# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|298673979|ref|YP_003725729.1| - 7.2e-26 89.7 1.4 1.2e-25 88.9 0.2 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|298673979|ref|YP_003725729.1| - 4.5e-12 46.2 0.1 1.1e-11 45.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298673979|ref|YP_003725729.1| - 2.7e-11 43.7 0.3 1.6e-10 41.2 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|298673979|ref|YP_003725729.1| - 5.7e-09 36.0 0.1 1.1e-08 35.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|298673979|ref|YP_003725729.1| - 2.7e-08 34.1 0.3 7.9e-08 32.5 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|298673979|ref|YP_003725729.1| - 1.2e-06 28.2 0.0 2.6e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.4 gi|298673979|ref|YP_003725729.1| - 4.2e-05 22.6 0.0 6.3e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.24 gi|298673979|ref|YP_003725729.1| - 0.00085 18.8 6.2 0.39 10.1 0.1 3.2 2 1 0 3 3 3 2 DEAD/DEAH box helicase KAP_NTPase PF07693.9 gi|298673979|ref|YP_003725729.1| - 0.00091 18.3 2.3 0.27 10.1 0.5 2.3 1 1 1 2 2 2 2 KAP family P-loop domain RuvB_N PF05496.7 gi|298673979|ref|YP_003725729.1| - 0.0022 17.0 0.0 0.044 12.8 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|298673979|ref|YP_003725729.1| - 0.0029 16.5 0.2 0.027 13.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|298673979|ref|YP_003725729.1| - 0.0033 17.1 1.2 0.029 14.0 0.8 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein T2SE PF00437.15 gi|298673979|ref|YP_003725729.1| - 0.006 15.5 0.1 0.016 14.1 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|298673979|ref|YP_003725729.1| - 0.0095 15.3 0.0 0.025 13.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|298673979|ref|YP_003725729.1| - 0.011 15.2 0.1 0.025 14.0 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|298673979|ref|YP_003725729.1| - 0.02 13.7 0.1 0.033 13.0 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_2 PF07724.9 gi|298673979|ref|YP_003725729.1| - 0.023 14.6 0.4 0.13 12.1 0.1 2.3 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.1 gi|298673979|ref|YP_003725729.1| - 0.066 13.5 1.7 0.17 12.2 0.4 2.3 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|298673979|ref|YP_003725729.1| - 0.066 12.7 0.3 0.14 11.7 0.1 1.6 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|298673979|ref|YP_003725729.1| - 0.083 12.3 0.2 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|298673979|ref|YP_003725729.1| - 0.11 13.2 0.6 0.27 12.0 0.4 2.0 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|298673979|ref|YP_003725729.1| - 0.12 12.6 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|298673979|ref|YP_003725729.1| - 0.5 10.6 3.5 1.2 9.4 2.4 1.8 1 1 0 1 1 1 0 AAA domain UPF0104 PF03706.8 gi|298673980|ref|YP_003725730.1| - 1e-45 156.2 13.4 1.3e-45 155.9 9.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glyco_trans_1_3 PF13528.1 gi|298673981|ref|YP_003725731.1| - 2.7e-34 118.8 0.0 8.3e-34 117.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|298673981|ref|YP_003725731.1| - 3.1e-12 46.4 0.0 5.3e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain UDPGT PF00201.13 gi|298673981|ref|YP_003725731.1| - 2e-09 36.5 0.0 6.4e-09 34.8 0.0 1.6 2 0 0 2 2 2 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_transf_28 PF03033.15 gi|298673981|ref|YP_003725731.1| - 2.9e-07 30.3 0.0 1.1e-06 28.4 0.0 2.0 2 1 1 3 3 3 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_1_4 PF13692.1 gi|298673981|ref|YP_003725731.1| - 0.00044 20.4 0.0 0.0007 19.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1884 PF08967.5 gi|298673981|ref|YP_003725731.1| - 0.11 12.5 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) Peptidase_S24 PF00717.18 gi|298673982|ref|YP_003725732.1| - 3.4e-06 26.6 0.1 6.1e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|298673983|ref|YP_003725733.1| - 6e-15 55.0 0.0 9.5e-15 54.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|298673983|ref|YP_003725733.1| - 2.5e-12 46.9 0.1 4.9e-12 45.9 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.20 gi|298673983|ref|YP_003725733.1| - 9.2e-06 25.4 0.7 2.2e-05 24.2 0.1 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Metallophos PF00149.23 gi|298673983|ref|YP_003725733.1| - 7.6e-05 22.1 3.1 0.00015 21.2 2.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Wyosine_form PF08608.7 gi|298673984|ref|YP_003725734.1| - 8.5e-22 77.0 0.0 3.3e-21 75.1 0.0 1.9 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|298673984|ref|YP_003725734.1| - 6.2e-21 75.2 0.0 1.6e-20 73.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298673984|ref|YP_003725734.1| - 0.0003 20.8 0.1 0.0096 16.0 0.1 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298673984|ref|YP_003725734.1| - 0.0063 16.5 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|298673984|ref|YP_003725734.1| - 0.045 13.9 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DnaB_bind PF10410.4 gi|298673984|ref|YP_003725734.1| - 0.16 12.0 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase eRF1_2 PF03464.10 gi|298673985|ref|YP_003725735.1| - 1.5e-35 122.4 0.0 3.6e-35 121.1 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|298673985|ref|YP_003725735.1| - 7.6e-35 119.5 0.2 6.7e-34 116.5 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|298673985|ref|YP_003725735.1| - 7.6e-24 83.7 0.1 1.6e-23 82.7 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 1 DnaJ_CXXCXGXG PF00684.14 gi|298673985|ref|YP_003725735.1| - 0.027 14.5 0.6 0.052 13.5 0.4 1.4 1 0 0 1 1 1 0 DnaJ central domain Rad50_zn_hook PF04423.9 gi|298673985|ref|YP_003725735.1| - 0.044 13.2 0.1 1.5 8.3 0.0 3.0 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc_ribbon_5 PF13719.1 gi|298673985|ref|YP_003725735.1| - 0.061 12.9 0.5 11 5.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|298673985|ref|YP_003725735.1| - 0.089 12.4 0.3 1.4 8.6 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-CSL PF05207.8 gi|298673985|ref|YP_003725735.1| - 0.15 11.5 0.7 3.1 7.3 0.1 2.5 2 0 0 2 2 2 0 CSL zinc finger zinc_ribbon_4 PF13717.1 gi|298673985|ref|YP_003725735.1| - 0.18 11.5 0.6 20 4.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|298673985|ref|YP_003725735.1| - 0.18 11.3 0.1 0.18 11.3 0.1 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|298673985|ref|YP_003725735.1| - 0.28 11.1 6.3 0.16 11.9 1.1 2.6 2 1 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|298673985|ref|YP_003725735.1| - 8.1 5.8 6.7 79 2.6 4.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain tRNA-synt_1d PF00750.14 gi|298673986|ref|YP_003725736.1| - 2.9e-62 210.5 4.2 4.9e-62 209.8 2.9 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|298673986|ref|YP_003725736.1| - 1.9e-34 118.1 0.0 4e-34 117.1 0.0 1.6 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|298673986|ref|YP_003725736.1| - 3.3e-13 49.9 0.0 8.1e-13 48.7 0.0 1.7 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|298673986|ref|YP_003725736.1| - 1.8e-07 30.1 0.1 0.0028 16.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|298673986|ref|YP_003725736.1| - 5.1e-05 22.1 5.3 0.018 13.7 0.1 4.0 4 1 1 5 5 5 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|298673986|ref|YP_003725736.1| - 0.0001 21.5 0.5 0.00024 20.3 0.1 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.17 gi|298673986|ref|YP_003725736.1| - 0.0029 15.6 0.0 0.0082 14.1 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) FKBP_C PF00254.23 gi|298673987|ref|YP_003725737.1| - 6.3e-24 83.8 0.3 8.7e-24 83.3 0.2 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase OrfB_IS605 PF01385.14 gi|298673988|ref|YP_003725738.1| - 8.5e-45 152.8 6.1 8.5e-45 152.8 4.3 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298673988|ref|YP_003725738.1| - 1.6e-23 82.1 0.3 3.1e-23 81.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298673988|ref|YP_003725738.1| - 2.1e-20 71.7 3.1 4.9e-20 70.5 2.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain M_domain PF12938.2 gi|298673988|ref|YP_003725738.1| - 0.77 9.5 5.7 0.18 11.5 1.5 1.7 2 0 0 2 2 2 0 M domain of GW182 Phage_GP20 PF06810.6 gi|298673988|ref|YP_003725738.1| - 2.1 7.7 10.8 0.089 12.2 1.0 2.7 3 0 0 3 3 3 0 Phage minor structural protein GP20 Oxidored_molyb PF00174.14 gi|298673989|ref|YP_003725739.1| - 7.7e-46 155.5 0.0 1.1e-45 155.0 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain URO-D PF01208.12 gi|298673990|ref|YP_003725740.1| - 1.3e-82 277.5 0.0 1.4e-82 277.3 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) URO-D PF01208.12 gi|298673991|ref|YP_003725741.1| - 1.3e-84 284.1 0.0 1.4e-84 283.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.13 gi|298673992|ref|YP_003725742.1| - 1.9e-05 23.7 0.0 0.003 16.5 0.0 2.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DUF95 PF01944.12 gi|298673993|ref|YP_003725743.1| - 8.3e-14 51.5 19.4 9.7e-14 51.3 6.8 2.6 2 1 0 2 2 2 2 Integral membrane protein DUF95 PRA1 PF03208.14 gi|298673993|ref|YP_003725743.1| - 0.0081 15.5 1.9 0.0081 15.5 1.3 2.6 2 1 0 3 3 3 1 PRA1 family protein Phage_30_8 PF06019.6 gi|298673993|ref|YP_003725743.1| - 0.04 13.6 0.4 0.079 12.6 0.3 1.4 1 0 0 1 1 1 0 Phage GP30.8 protein KaiC PF06745.8 gi|298673994|ref|YP_003725744.1| - 3.1e-49 167.1 0.0 4.1e-49 166.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|298673994|ref|YP_003725744.1| - 8e-10 38.4 0.0 2.2e-09 37.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|298673994|ref|YP_003725744.1| - 0.00037 18.9 0.0 0.00078 17.8 0.0 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|298673994|ref|YP_003725744.1| - 0.0004 19.3 0.1 0.019 13.8 0.0 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|298673994|ref|YP_003725744.1| - 0.00073 18.6 0.0 0.0012 17.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|298673994|ref|YP_003725744.1| - 0.0011 18.6 0.1 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|298673994|ref|YP_003725744.1| - 0.0022 18.1 0.0 0.0074 16.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|298673994|ref|YP_003725744.1| - 0.0044 16.9 0.0 0.015 15.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|298673994|ref|YP_003725744.1| - 0.0048 17.7 0.4 0.0091 16.8 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|298673994|ref|YP_003725744.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain RecA PF00154.16 gi|298673994|ref|YP_003725744.1| - 0.018 14.1 0.2 0.032 13.3 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Arch_ATPase PF01637.13 gi|298673994|ref|YP_003725744.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|298673994|ref|YP_003725744.1| - 0.044 14.0 0.3 0.11 12.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|298673994|ref|YP_003725744.1| - 0.079 11.8 0.1 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|298673994|ref|YP_003725744.1| - 0.098 12.6 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain Rad51 PF08423.6 gi|298673994|ref|YP_003725744.1| - 0.12 11.3 0.4 1.6 7.5 0.1 2.0 2 0 0 2 2 2 0 Rad51 AAA_29 PF13555.1 gi|298673994|ref|YP_003725744.1| - 0.13 11.8 0.1 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_11 PF13086.1 gi|298673994|ref|YP_003725744.1| - 0.13 11.8 0.0 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain S-antigen PF05756.6 gi|298673995|ref|YP_003725745.1| - 0.15 12.0 6.0 0.27 11.2 4.1 1.4 1 0 0 1 1 1 0 S-antigen protein GTP_EFTU_D2 PF03144.20 gi|298673996|ref|YP_003725746.1| - 1.3e-07 31.6 0.0 5.1e-07 29.7 0.0 2.1 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU PF00009.22 gi|298673996|ref|YP_003725746.1| - 6e-06 25.8 0.0 2e-05 24.1 0.0 1.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|298673996|ref|YP_003725746.1| - 0.0099 15.4 0.0 0.034 13.7 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 4 DNA_ligase_A_M PF01068.16 gi|298673997|ref|YP_003725747.1| - 2.9e-25 88.8 0.2 8.6e-25 87.2 0.1 1.8 1 1 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|298673997|ref|YP_003725747.1| - 2.5e-11 43.7 0.1 1.2e-10 41.4 0.1 1.9 1 1 0 1 1 1 1 RNA ligase CBS PF00571.23 gi|298673998|ref|YP_003725748.1| - 4.4e-43 144.8 12.6 8.4e-14 51.0 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|298673999|ref|YP_003725749.1| - 2e-52 174.7 12.6 1.6e-14 53.3 0.4 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|298674000|ref|YP_003725750.1| - 4e-61 202.5 5.3 3.9e-15 55.3 0.0 4.2 4 0 0 4 4 4 4 CBS domain DUF362 PF04015.7 gi|298674000|ref|YP_003725750.1| - 0.016 14.6 0.4 1 8.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF362) GAF_2 PF13185.1 gi|298674000|ref|YP_003725750.1| - 0.051 14.0 0.0 3.8 8.0 0.0 2.3 2 0 0 2 2 2 0 GAF domain CBS PF00571.23 gi|298674001|ref|YP_003725751.1| - 1.4e-46 155.9 7.0 5.5e-13 48.4 0.0 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|298674002|ref|YP_003725752.1| - 2.2e-31 107.3 4.0 7.6e-15 54.4 0.5 2.2 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.11 gi|298674002|ref|YP_003725752.1| - 0.068 12.3 0.5 0.43 9.7 0.1 2.0 1 1 1 2 2 2 0 DisA bacterial checkpoint controller nucleotide-binding DUF3116 PF11313.3 gi|298674003|ref|YP_003725753.1| - 0.0074 15.8 0.5 0.019 14.5 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) Alpha-2-MRAP_N PF06400.6 gi|298674003|ref|YP_003725753.1| - 0.021 14.5 2.1 0.037 13.6 1.5 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin RAP, N-terminal domain DUF3221 PF11518.3 gi|298674003|ref|YP_003725753.1| - 0.03 13.9 1.4 0.056 13.1 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3221) FliL PF03748.9 gi|298674003|ref|YP_003725753.1| - 0.093 12.7 0.3 0.18 11.7 0.2 1.5 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL YqfD PF06898.6 gi|298674003|ref|YP_003725753.1| - 0.21 10.2 5.8 0.29 9.7 4.0 1.2 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD DUF3552 PF12072.3 gi|298674004|ref|YP_003725754.1| - 0.0028 16.8 10.2 0.0035 16.5 7.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) Fmp27_WPPW PF10359.4 gi|298674004|ref|YP_003725754.1| - 0.0042 15.5 4.3 0.0041 15.6 3.0 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain ACCA PF03255.9 gi|298674004|ref|YP_003725754.1| - 0.022 14.2 4.4 0.033 13.7 3.1 1.2 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF1615 PF07759.7 gi|298674004|ref|YP_003725754.1| - 0.39 9.4 4.3 0.58 8.8 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) Ly49 PF08391.5 gi|298674004|ref|YP_003725754.1| - 0.4 10.8 4.2 0.69 10.0 2.9 1.4 1 0 0 1 1 1 0 Ly49-like protein, N-terminal region DUF4407 PF14362.1 gi|298674004|ref|YP_003725754.1| - 1.2 7.9 3.4 1.7 7.5 2.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) V_ATPase_I PF01496.14 gi|298674004|ref|YP_003725754.1| - 1.8 6.2 5.5 1.9 6.2 3.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family tRNA_anti-codon PF01336.20 gi|298674005|ref|YP_003725755.1| - 2.2e-26 91.4 8.7 9.2e-09 35.0 0.2 3.7 3 1 1 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|298674005|ref|YP_003725755.1| - 0.0011 18.6 0.5 6 6.5 0.0 3.3 3 0 0 3 3 3 2 Replication factor-A C terminal domain DUF2240 PF09999.4 gi|298674005|ref|YP_003725755.1| - 0.039 13.3 0.0 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) PTS_2-RNA PF01885.11 gi|298674006|ref|YP_003725756.1| - 1.5e-38 131.9 0.0 1.8e-38 131.6 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Endonuclease_7 PF02945.10 gi|298674006|ref|YP_003725756.1| - 1.1 8.9 3.7 0.27 10.9 0.2 1.8 2 1 0 2 2 2 0 Recombination endonuclease VII RTC PF01137.16 gi|298674007|ref|YP_003725757.1| - 1.2e-79 266.3 0.0 1.4e-79 266.0 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|298674007|ref|YP_003725757.1| - 4.8e-21 74.6 0.0 7.7e-21 74.0 0.0 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Pyr_redox_2 PF07992.9 gi|298674008|ref|YP_003725758.1| - 5.1e-30 104.8 5.1 2.5e-20 73.2 0.3 3.3 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|298674008|ref|YP_003725758.1| - 7e-23 80.8 4.8 1.3e-16 60.7 0.3 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|298674008|ref|YP_003725758.1| - 1.3e-14 54.1 0.1 3.6e-14 52.7 0.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|298674008|ref|YP_003725758.1| - 2.3e-12 47.4 0.4 3.5e-06 27.2 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|298674008|ref|YP_003725758.1| - 5.6e-12 45.2 3.8 0.004 16.1 0.1 3.9 4 1 0 4 4 4 3 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|298674008|ref|YP_003725758.1| - 1.4e-10 40.6 0.2 3.8e-07 29.3 0.0 3.0 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|298674008|ref|YP_003725758.1| - 5.6e-08 32.0 5.0 5.6e-05 22.1 0.1 3.4 3 1 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|298674008|ref|YP_003725758.1| - 8.4e-06 24.4 9.3 0.041 12.3 0.0 4.0 3 1 1 4 4 4 2 HI0933-like protein Shikimate_DH PF01488.15 gi|298674008|ref|YP_003725758.1| - 1e-05 25.6 1.8 0.011 15.8 0.2 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|298674008|ref|YP_003725758.1| - 0.0005 20.2 0.3 0.075 13.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|298674008|ref|YP_003725758.1| - 0.00073 19.2 6.8 0.0055 16.3 0.9 3.2 3 1 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|298674008|ref|YP_003725758.1| - 0.00098 18.1 1.3 0.033 13.1 0.0 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|298674008|ref|YP_003725758.1| - 0.0016 17.6 0.2 0.91 8.6 0.0 2.3 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|298674008|ref|YP_003725758.1| - 0.0019 17.6 0.3 1.1 8.6 0.0 2.4 2 0 0 2 2 2 2 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|298674008|ref|YP_003725758.1| - 0.0039 17.1 0.4 0.35 10.8 0.0 2.8 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.16 gi|298674008|ref|YP_003725758.1| - 0.0045 16.8 1.2 2.6 7.8 0.0 2.5 2 0 0 2 2 2 2 ThiF family NAD_binding_8 PF13450.1 gi|298674008|ref|YP_003725758.1| - 0.007 16.3 0.1 0.007 16.3 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|298674008|ref|YP_003725758.1| - 0.0093 15.7 0.9 0.77 9.4 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|298674008|ref|YP_003725758.1| - 0.013 14.4 1.7 0.032 13.1 0.1 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase FAD_oxidored PF12831.2 gi|298674008|ref|YP_003725758.1| - 0.014 14.5 5.8 9.1 5.2 0.0 3.6 4 0 0 4 4 4 0 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|298674008|ref|YP_003725758.1| - 0.015 15.3 1.0 0.46 10.4 0.2 2.5 3 0 0 3 3 2 0 NADH(P)-binding PPP5 PF08321.7 gi|298674008|ref|YP_003725758.1| - 0.045 13.7 0.1 0.12 12.3 0.1 1.8 1 0 0 1 1 1 0 PPP5 TPR repeat region FAD_binding_3 PF01494.14 gi|298674008|ref|YP_003725758.1| - 0.055 12.5 7.2 7.6 5.4 0.3 3.4 3 1 0 3 3 3 0 FAD binding domain GIDA PF01134.17 gi|298674008|ref|YP_003725758.1| - 0.063 12.1 8.5 0.11 11.3 0.6 3.2 3 1 0 3 3 3 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|298674008|ref|YP_003725758.1| - 0.094 12.4 0.2 3 7.5 0.0 2.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding F420_oxidored PF03807.12 gi|298674008|ref|YP_003725758.1| - 0.39 11.1 5.1 0.79 10.1 0.0 3.0 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Toprim_4 PF13662.1 gi|298674010|ref|YP_003725760.1| - 1.4e-09 37.8 0.2 5.7e-09 35.8 0.1 2.1 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|298674010|ref|YP_003725760.1| - 0.0089 15.9 0.0 0.04 13.9 0.0 2.1 1 1 0 1 1 1 1 Toprim domain UPF0058 PF01893.11 gi|298674011|ref|YP_003725761.1| - 2.3e-33 114.1 0.1 2.5e-33 113.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Acetyltransf_1 PF00583.19 gi|298674012|ref|YP_003725762.1| - 9.6e-17 60.7 0.4 1.6e-16 60.1 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|298674012|ref|YP_003725762.1| - 4.9e-11 42.7 0.0 8.9e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|298674012|ref|YP_003725762.1| - 2.3e-09 37.2 0.3 4.4e-09 36.3 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|298674012|ref|YP_003725762.1| - 2.7e-07 30.8 0.2 1.3e-06 28.6 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|298674012|ref|YP_003725762.1| - 8.1e-07 29.1 0.2 2.8e-06 27.3 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|298674012|ref|YP_003725762.1| - 2.4e-06 27.1 0.1 4.1e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|298674012|ref|YP_003725762.1| - 2.9e-06 27.2 0.0 4.5e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|298674012|ref|YP_003725762.1| - 0.0093 15.8 0.0 0.022 14.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|298674012|ref|YP_003725762.1| - 0.041 13.7 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF2642 PF10842.3 gi|298674012|ref|YP_003725762.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) TGT PF01702.13 gi|298674013|ref|YP_003725763.1| - 1.6e-22 79.9 0.1 3.3e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|298674013|ref|YP_003725763.1| - 3.2e-17 62.1 0.0 7.4e-17 60.9 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|298674013|ref|YP_003725763.1| - 2.8e-13 49.3 0.2 6.3e-13 48.2 0.2 1.6 1 0 0 1 1 1 1 PUA domain FAD-oxidase_C PF02913.14 gi|298674014|ref|YP_003725764.1| - 3.7e-57 193.4 0.0 5.4e-57 192.9 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|298674014|ref|YP_003725764.1| - 6.7e-46 155.2 0.1 1.2e-45 154.4 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|298674015|ref|YP_003725765.1| - 5.6e-30 103.1 9.9 3e-15 55.9 0.2 2.6 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|298674015|ref|YP_003725765.1| - 8.1e-12 44.9 4.7 8.1e-12 44.9 3.3 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674015|ref|YP_003725765.1| - 1.5e-10 41.2 3.6 1.5e-10 41.2 2.5 2.8 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674015|ref|YP_003725765.1| - 1.5e-06 28.4 7.1 1.5e-06 28.4 4.9 2.6 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674015|ref|YP_003725765.1| - 1.3e-05 24.9 22.3 2.8e-05 23.8 7.7 3.0 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674015|ref|YP_003725765.1| - 1.3e-05 25.3 13.5 0.0025 18.0 0.1 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674015|ref|YP_003725765.1| - 1.6e-05 24.5 18.8 0.0033 17.2 0.8 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298674015|ref|YP_003725765.1| - 1.7e-05 25.4 8.7 0.0032 18.1 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|298674015|ref|YP_003725765.1| - 2.4e-05 23.7 20.5 0.0013 18.2 1.0 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674015|ref|YP_003725765.1| - 0.00021 21.0 12.7 0.03 14.1 0.3 3.9 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674015|ref|YP_003725765.1| - 0.00078 19.8 12.9 0.075 13.4 0.8 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674015|ref|YP_003725765.1| - 0.0098 16.1 2.3 0.0098 16.1 1.6 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674015|ref|YP_003725765.1| - 0.018 15.5 5.7 0.27 11.8 0.1 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298674015|ref|YP_003725765.1| - 0.022 15.1 9.4 0.63 10.4 0.5 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298674015|ref|YP_003725765.1| - 0.051 14.1 4.8 0.051 14.1 3.3 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|298674015|ref|YP_003725765.1| - 0.098 12.2 2.3 1.1 8.8 0.1 2.8 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Phage_holin PF04688.8 gi|298674015|ref|YP_003725765.1| - 0.14 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Phage lysis protein, holin Rad50_zn_hook PF04423.9 gi|298674015|ref|YP_003725765.1| - 0.5 9.8 3.5 1.3 8.5 0.0 3.2 3 0 0 3 3 3 0 Rad50 zinc hook motif Fer4_6 PF12837.2 gi|298674015|ref|YP_003725765.1| - 0.7 9.8 22.9 0.12 12.2 1.2 3.3 4 0 0 4 4 4 0 4Fe-4S binding domain Radical_SAM_N PF08497.5 gi|298674016|ref|YP_003725766.1| - 3.4e-134 446.5 0.0 5.5e-134 445.8 0.0 1.3 1 0 0 1 1 1 1 Radical SAM N-terminal Radical_SAM PF04055.16 gi|298674016|ref|YP_003725766.1| - 1.4e-17 64.3 0.1 2.2e-16 60.4 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily DUF3362 PF11842.3 gi|298674016|ref|YP_003725766.1| - 5.5e-14 52.3 0.1 1.3e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) B12-binding PF02310.14 gi|298674016|ref|YP_003725766.1| - 1.8e-06 27.8 0.0 0.18 11.6 0.0 4.0 3 1 1 4 4 4 2 B12 binding domain Lactamase_B PF00753.22 gi|298674017|ref|YP_003725767.1| - 2e-31 109.1 0.5 2.3e-31 108.9 0.3 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|298674017|ref|YP_003725767.1| - 1.7e-06 27.7 0.2 2.2e-06 27.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TatD_DNase PF01026.16 gi|298674018|ref|YP_003725768.1| - 7.5e-66 221.9 0.3 8.5e-66 221.7 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|298674018|ref|YP_003725768.1| - 0.053 13.0 0.0 0.19 11.2 0.0 2.1 1 1 0 1 1 1 0 Amidohydrolase HMGL-like PF00682.14 gi|298674019|ref|YP_003725769.1| - 2e-75 253.4 1.6 2e-75 253.4 1.1 1.7 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.5 gi|298674019|ref|YP_003725769.1| - 2.2e-31 108.3 3.8 5.1e-31 107.2 2.6 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Radical_SAM PF04055.16 gi|298674019|ref|YP_003725769.1| - 0.00017 21.7 0.3 0.005 17.0 0.0 2.9 3 1 0 3 3 3 1 Radical SAM superfamily PBP_like_2 PF12849.2 gi|298674020|ref|YP_003725770.1| - 1.8e-37 129.3 2.2 3.3e-37 128.4 1.5 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|298674020|ref|YP_003725770.1| - 1.9e-24 85.6 0.0 2.9e-24 85.0 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain DUF2538 PF10804.3 gi|298674020|ref|YP_003725770.1| - 0.0043 16.9 0.1 0.0072 16.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2538) SBP_bac_1 PF01547.20 gi|298674020|ref|YP_003725770.1| - 0.0064 16.2 4.6 0.01 15.5 3.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|298674021|ref|YP_003725771.1| - 4.5e-19 68.6 10.2 4.5e-19 68.6 7.1 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|298674022|ref|YP_003725772.1| - 1.3e-21 76.9 16.2 1.3e-21 76.9 11.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TMEM169 PF15052.1 gi|298674022|ref|YP_003725772.1| - 0.37 10.7 7.5 0.035 14.0 0.9 2.3 2 1 1 3 3 3 0 TMEM169 protein family ABC_tran PF00005.22 gi|298674023|ref|YP_003725773.1| - 6.9e-33 113.8 0.0 9.7e-33 113.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298674023|ref|YP_003725773.1| - 3e-17 63.5 0.0 8.5e-10 39.0 0.0 2.4 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|298674023|ref|YP_003725773.1| - 4.1e-10 39.2 0.2 4.2e-09 35.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|298674023|ref|YP_003725773.1| - 1.3e-06 27.7 0.2 0.034 13.1 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|298674023|ref|YP_003725773.1| - 3.7e-06 27.1 0.0 1e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|298674023|ref|YP_003725773.1| - 2.8e-05 23.0 0.0 0.0018 17.0 0.0 2.0 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|298674023|ref|YP_003725773.1| - 3.6e-05 23.3 0.0 0.027 13.8 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|298674023|ref|YP_003725773.1| - 0.0001 22.3 0.0 0.013 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|298674023|ref|YP_003725773.1| - 0.00011 21.4 0.0 0.00024 20.3 0.0 1.6 2 0 0 2 2 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|298674023|ref|YP_003725773.1| - 0.00022 20.6 0.0 0.00046 19.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|298674023|ref|YP_003725773.1| - 0.00031 21.1 0.1 0.00084 19.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|298674023|ref|YP_003725773.1| - 0.001 19.9 0.1 0.0027 18.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|298674023|ref|YP_003725773.1| - 0.0019 18.2 0.0 0.14 12.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|298674023|ref|YP_003725773.1| - 0.003 16.2 0.0 0.75 8.3 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|298674023|ref|YP_003725773.1| - 0.003 16.9 0.3 0.032 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|298674023|ref|YP_003725773.1| - 0.0047 16.8 0.0 0.0088 15.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.10 gi|298674023|ref|YP_003725773.1| - 0.011 14.4 0.0 0.084 11.5 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATP-synt_ab PF00006.20 gi|298674023|ref|YP_003725773.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|298674023|ref|YP_003725773.1| - 0.011 16.0 0.0 0.033 14.5 0.0 1.8 2 1 0 2 2 1 0 AAA domain Arch_ATPase PF01637.13 gi|298674023|ref|YP_003725773.1| - 0.012 15.3 0.3 0.047 13.3 0.2 2.0 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|298674023|ref|YP_003725773.1| - 0.013 15.3 0.0 0.05 13.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|298674023|ref|YP_003725773.1| - 0.013 14.5 0.0 0.21 10.6 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_13 PF13166.1 gi|298674023|ref|YP_003725773.1| - 0.017 13.6 0.0 3.6 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|298674023|ref|YP_003725773.1| - 0.03 13.8 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FtsK_SpoIIIE PF01580.13 gi|298674023|ref|YP_003725773.1| - 0.037 13.4 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|298674023|ref|YP_003725773.1| - 0.041 13.5 0.0 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|298674023|ref|YP_003725773.1| - 0.058 13.5 0.0 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Miro PF08477.8 gi|298674023|ref|YP_003725773.1| - 0.074 13.5 0.0 0.22 12.0 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein MobB PF03205.9 gi|298674023|ref|YP_003725773.1| - 0.092 12.4 0.1 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|298674023|ref|YP_003725773.1| - 0.098 12.2 0.0 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|298674023|ref|YP_003725773.1| - 0.11 12.7 0.0 2.3 8.4 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|298674023|ref|YP_003725773.1| - 0.11 12.5 0.1 0.2 11.6 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF3619 PF12279.3 gi|298674023|ref|YP_003725773.1| - 0.11 12.5 0.1 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) MutS_V PF00488.16 gi|298674023|ref|YP_003725773.1| - 0.14 11.5 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 MutS domain V NAC PF01849.13 gi|298674024|ref|YP_003725774.1| - 3e-19 68.2 2.3 4.3e-19 67.7 1.6 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|298674024|ref|YP_003725774.1| - 2.1e-06 27.3 4.4 7.9e-06 25.5 0.0 2.8 3 1 0 3 3 3 1 UBA/TS-N domain DUF3867 PF12983.2 gi|298674024|ref|YP_003725774.1| - 0.0023 17.9 0.4 0.0027 17.7 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3867) Death PF00531.17 gi|298674024|ref|YP_003725774.1| - 0.048 13.4 0.1 2.2 8.0 0.0 2.1 2 0 0 2 2 2 0 Death domain UBA_4 PF14555.1 gi|298674024|ref|YP_003725774.1| - 0.055 13.0 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 UBA-like domain DUF4004 PF13171.1 gi|298674024|ref|YP_003725774.1| - 0.096 12.8 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4004) DUF3779 PF12621.3 gi|298674024|ref|YP_003725774.1| - 0.18 11.7 0.7 0.41 10.5 0.1 1.8 1 1 1 2 2 2 0 Phosphate metabolism protein Fe-S_biosyn PF01521.15 gi|298674025|ref|YP_003725775.1| - 1.1e-13 51.0 0.0 1.3e-13 50.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Response_reg PF00072.19 gi|298674027|ref|YP_003725777.1| - 6.1e-27 93.8 0.0 7e-27 93.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PRA-CH PF01502.13 gi|298674028|ref|YP_003725778.1| - 1e-34 117.9 1.8 1.3e-34 117.6 1.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SE PF00437.15 gi|298674029|ref|YP_003725779.1| - 2.1e-11 43.2 0.0 3.6e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|298674029|ref|YP_003725779.1| - 9.1e-09 34.8 1.6 3.2e-08 33.0 1.1 2.0 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|298674029|ref|YP_003725779.1| - 6.4e-06 25.6 1.1 1.8e-05 24.2 0.8 1.8 1 0 0 1 1 1 1 KH domain AAA_19 PF13245.1 gi|298674029|ref|YP_003725779.1| - 0.00066 19.3 0.0 0.0018 17.9 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|298674029|ref|YP_003725779.1| - 0.00082 20.1 0.0 0.0022 18.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|298674029|ref|YP_003725779.1| - 0.0029 17.0 0.0 0.0059 16.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|298674029|ref|YP_003725779.1| - 0.0033 16.5 0.0 0.0071 15.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|298674029|ref|YP_003725779.1| - 0.0035 16.7 0.0 0.0069 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|298674029|ref|YP_003725779.1| - 0.0044 16.5 0.0 0.016 14.7 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|298674029|ref|YP_003725779.1| - 0.0075 16.5 0.0 0.12 12.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain KH_2 PF07650.12 gi|298674029|ref|YP_003725779.1| - 0.0083 15.6 1.4 0.027 14.0 0.9 1.9 1 0 0 1 1 1 1 KH domain AAA_14 PF13173.1 gi|298674029|ref|YP_003725779.1| - 0.0096 15.8 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|298674029|ref|YP_003725779.1| - 0.012 15.4 0.0 0.029 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|298674029|ref|YP_003725779.1| - 0.015 15.0 0.0 0.047 13.4 0.0 1.9 1 0 0 1 1 1 0 NTPase PIN_4 PF13638.1 gi|298674029|ref|YP_003725779.1| - 0.02 14.9 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 PIN domain NACHT PF05729.7 gi|298674029|ref|YP_003725779.1| - 0.023 14.3 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|298674029|ref|YP_003725779.1| - 0.032 14.3 0.0 0.57 10.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|298674029|ref|YP_003725779.1| - 0.033 13.7 0.0 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 KTI12 PF08433.5 gi|298674029|ref|YP_003725779.1| - 0.034 13.3 0.0 0.081 12.1 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.24 gi|298674029|ref|YP_003725779.1| - 0.038 14.1 0.0 0.12 12.5 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|298674029|ref|YP_003725779.1| - 0.038 13.6 0.0 0.98 9.1 0.0 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_11 PF13086.1 gi|298674029|ref|YP_003725779.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain KH_5 PF13184.1 gi|298674029|ref|YP_003725779.1| - 0.055 13.2 1.6 0.18 11.5 0.2 2.4 2 0 0 2 2 2 0 NusA-like KH domain AAA_16 PF13191.1 gi|298674029|ref|YP_003725779.1| - 0.067 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.13 gi|298674029|ref|YP_003725779.1| - 0.1 12.0 0.0 6.9 6.1 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase UDPG_MGDP_dh_N PF03721.9 gi|298674030|ref|YP_003725780.1| - 4.2e-67 225.1 0.2 1.6e-66 223.2 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|298674030|ref|YP_003725780.1| - 4.3e-35 119.8 0.0 8.6e-35 118.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|298674030|ref|YP_003725780.1| - 2e-30 105.0 0.0 5.2e-28 97.2 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|298674030|ref|YP_003725780.1| - 1.1e-09 38.1 0.1 4.9e-09 36.1 0.0 2.1 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|298674030|ref|YP_003725780.1| - 1.4e-06 28.0 0.0 2.6e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|298674030|ref|YP_003725780.1| - 1.3e-05 25.5 0.0 0.0043 17.4 0.0 2.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|298674030|ref|YP_003725780.1| - 0.00013 21.3 0.1 0.00029 20.3 0.1 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|298674030|ref|YP_003725780.1| - 0.00019 21.7 0.1 0.00057 20.2 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|298674030|ref|YP_003725780.1| - 0.0015 17.6 0.1 0.0023 17.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.10 gi|298674030|ref|YP_003725780.1| - 0.0029 17.4 0.0 0.025 14.4 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|298674030|ref|YP_003725780.1| - 0.0035 17.3 0.1 0.0082 16.1 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain DAO PF01266.19 gi|298674030|ref|YP_003725780.1| - 0.0054 15.6 0.2 0.0081 15.0 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|298674030|ref|YP_003725780.1| - 0.0087 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.17 gi|298674030|ref|YP_003725780.1| - 0.018 15.5 0.0 0.047 14.1 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.9 gi|298674030|ref|YP_003725780.1| - 0.018 14.9 0.0 0.1 12.4 0.3 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|298674030|ref|YP_003725780.1| - 0.027 13.6 0.1 0.23 10.6 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CitF PF04223.7 gi|298674030|ref|YP_003725780.1| - 0.035 12.7 0.0 0.052 12.2 0.0 1.2 1 0 0 1 1 1 0 Citrate lyase, alpha subunit (CitF) NAD_binding_8 PF13450.1 gi|298674030|ref|YP_003725780.1| - 0.11 12.5 0.2 0.11 12.5 0.1 2.2 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|298674030|ref|YP_003725780.1| - 0.11 12.2 0.3 0.33 10.7 0.2 1.8 1 0 0 1 1 1 0 ThiF family DUF1660 PF07874.6 gi|298674031|ref|YP_003725781.1| - 0.0094 16.2 0.5 0.012 15.8 0.4 1.2 1 0 0 1 1 1 1 Prophage protein (DUF1660) Zn-ribbon_8 PF09723.5 gi|298674031|ref|YP_003725781.1| - 0.13 12.2 1.3 0.21 11.5 0.9 1.3 1 0 0 1 1 1 0 Zinc ribbon domain GATase PF00117.23 gi|298674032|ref|YP_003725782.1| - 5.5e-33 114.0 0.0 6.2e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|298674032|ref|YP_003725782.1| - 6.3e-09 35.7 0.0 8.4e-05 22.2 0.0 2.0 2 0 0 2 2 2 2 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|298674032|ref|YP_003725782.1| - 4.6e-07 29.5 0.1 3.2e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|298674032|ref|YP_003725782.1| - 1e-06 28.3 0.0 2.2e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|298674032|ref|YP_003725782.1| - 0.012 15.0 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family AIRS_C PF02769.17 gi|298674033|ref|YP_003725783.1| - 6.8e-19 68.3 1.8 1.2e-18 67.6 1.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|298674033|ref|YP_003725783.1| - 5.3e-11 42.6 0.2 1.2e-10 41.4 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ATP-cone PF03477.11 gi|298674033|ref|YP_003725783.1| - 2 8.8 4.5 1.2 9.6 0.3 2.6 3 0 0 3 3 3 0 ATP cone domain NfeD PF01957.13 gi|298674034|ref|YP_003725784.1| - 2e-34 118.7 0.9 2e-34 118.7 0.6 2.9 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|298674034|ref|YP_003725784.1| - 6.1e-06 26.0 0.7 1e-05 25.2 0.5 1.3 1 0 0 1 1 1 1 Clp protease DUF4401 PF14351.1 gi|298674034|ref|YP_003725784.1| - 0.11 11.4 7.3 0.26 10.2 5.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4401) DUF872 PF05915.7 gi|298674034|ref|YP_003725784.1| - 0.15 11.9 4.4 3.1 7.6 1.3 3.0 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Band_7 PF01145.20 gi|298674035|ref|YP_003725785.1| - 1.3e-35 122.9 4.0 1.9e-35 122.3 2.7 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|298674035|ref|YP_003725785.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family DHH PF01368.15 gi|298674036|ref|YP_003725786.1| - 3.3e-10 39.7 0.1 7.8e-10 38.5 0.1 1.6 1 1 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|298674036|ref|YP_003725786.1| - 2.3e-08 33.7 0.5 7.9e-08 32.0 0.0 2.1 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|298674036|ref|YP_003725786.1| - 4e-07 30.0 2.0 4e-07 30.0 1.4 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DnaJ_CXXCXGXG PF00684.14 gi|298674036|ref|YP_003725786.1| - 4.6e-07 29.8 13.0 4.6e-07 29.8 9.0 2.8 1 1 0 2 2 2 1 DnaJ central domain Cript PF10235.4 gi|298674036|ref|YP_003725786.1| - 0.96 9.8 8.7 3.7 7.9 6.0 2.0 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT Pribosyltran PF00156.22 gi|298674037|ref|YP_003725787.1| - 1.7e-21 76.2 0.4 2.9e-21 75.4 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|298674037|ref|YP_003725787.1| - 1.6e-05 24.2 0.2 2.2e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|298674037|ref|YP_003725787.1| - 0.00046 19.5 0.3 0.0062 15.8 0.1 2.0 1 1 1 2 2 2 1 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|298674037|ref|YP_003725787.1| - 0.0013 18.4 2.0 0.08 12.6 0.3 2.6 2 1 1 3 3 3 1 Phosphoribosyl synthetase-associated domain HTH_11 PF08279.7 gi|298674037|ref|YP_003725787.1| - 0.0033 17.0 0.4 0.036 13.7 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.10 gi|298674037|ref|YP_003725787.1| - 0.012 15.5 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|298674037|ref|YP_003725787.1| - 0.028 13.7 0.0 0.058 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|298674037|ref|YP_003725787.1| - 0.046 13.0 0.0 0.11 11.8 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|298674037|ref|YP_003725787.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain PIN_4 PF13638.1 gi|298674038|ref|YP_003725788.1| - 0.00087 19.4 0.2 0.0011 19.1 0.2 1.2 1 0 0 1 1 1 1 PIN domain DNA_ligase_ZBD PF03119.11 gi|298674038|ref|YP_003725788.1| - 0.01 15.5 0.1 0.025 14.2 0.1 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.6 gi|298674038|ref|YP_003725788.1| - 0.34 10.5 2.7 0.63 9.7 1.4 1.8 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.9 gi|298674038|ref|YP_003725788.1| - 0.63 9.5 3.7 0.82 9.1 1.0 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif RPE65 PF03055.10 gi|298674039|ref|YP_003725789.1| - 3.6e-111 372.1 0.0 4.4e-111 371.8 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein DUF4394 PF14339.1 gi|298674039|ref|YP_003725789.1| - 0.18 11.0 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4394) NAD_synthase PF02540.12 gi|298674040|ref|YP_003725790.1| - 5.9e-85 284.0 0.0 7.3e-85 283.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|298674040|ref|YP_003725790.1| - 9.3e-08 31.0 0.0 1.2e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|298674040|ref|YP_003725790.1| - 0.00075 19.0 0.0 0.00097 18.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase CHIPS PF11434.3 gi|298674040|ref|YP_003725790.1| - 0.033 13.7 0.1 0.06 12.9 0.1 1.3 1 0 0 1 1 1 0 Chemotaxis-inhibiting protein CHIPS ThiI PF02568.9 gi|298674040|ref|YP_003725790.1| - 0.054 12.9 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) VP7 PF00434.13 gi|298674040|ref|YP_003725790.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Glycoprotein VP7 QueC PF06508.8 gi|298674040|ref|YP_003725790.1| - 0.16 11.2 0.0 0.33 10.1 0.0 1.5 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF1743 PF08489.6 gi|298674041|ref|YP_003725791.1| - 4.5e-35 119.9 0.0 9.3e-35 118.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|298674041|ref|YP_003725791.1| - 0.00028 20.6 0.0 0.00051 19.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|298674041|ref|YP_003725791.1| - 0.0006 19.6 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|298674041|ref|YP_003725791.1| - 0.013 15.1 1.8 0.034 13.7 1.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.16 gi|298674041|ref|YP_003725791.1| - 0.057 13.2 2.0 0.1 12.4 1.4 1.4 1 0 0 1 1 1 0 IBR domain C1_1 PF00130.17 gi|298674041|ref|YP_003725791.1| - 0.1 12.3 2.0 0.18 11.5 1.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_3 PF01381.17 gi|298674042|ref|YP_003725792.1| - 5.2e-10 39.0 1.5 8.2e-09 35.1 0.1 3.2 4 0 0 4 4 4 1 Helix-turn-helix HTH_19 PF12844.2 gi|298674042|ref|YP_003725792.1| - 2.2e-07 30.8 0.2 1.1e-06 28.5 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|298674042|ref|YP_003725792.1| - 0.00019 21.5 0.0 0.00036 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|298674042|ref|YP_003725792.1| - 0.0011 18.6 0.1 0.0043 16.6 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.1 gi|298674042|ref|YP_003725792.1| - 0.0041 16.7 0.0 0.0091 15.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.1 gi|298674042|ref|YP_003725792.1| - 0.016 14.8 0.0 0.043 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|298674042|ref|YP_003725792.1| - 0.023 14.2 0.3 0.049 13.1 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|298674042|ref|YP_003725792.1| - 0.028 14.1 0.0 0.067 12.9 0.0 1.6 1 0 0 1 1 1 0 MerR HTH family regulatory protein MerR PF00376.18 gi|298674042|ref|YP_003725792.1| - 0.033 13.7 0.1 0.088 12.3 0.1 1.8 1 0 0 1 1 1 0 MerR family regulatory protein HTH_36 PF13730.1 gi|298674042|ref|YP_003725792.1| - 0.037 14.1 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|298674042|ref|YP_003725792.1| - 0.071 12.9 0.1 0.25 11.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF2167 PF09935.4 gi|298674042|ref|YP_003725792.1| - 0.11 11.3 0.1 0.19 10.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2167) Formyl_trans_N PF00551.14 gi|298674043|ref|YP_003725793.1| - 1e-56 191.3 0.0 1.1e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 Formyl transferase HGD-D PF06050.8 gi|298674043|ref|YP_003725793.1| - 0.015 14.1 0.0 0.39 9.4 0.0 2.0 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component SHMT PF00464.14 gi|298674044|ref|YP_003725794.1| - 3.2e-172 572.4 1.1 3.7e-172 572.1 0.7 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|298674044|ref|YP_003725794.1| - 4.6e-06 26.0 0.3 7.1e-06 25.3 0.2 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|298674044|ref|YP_003725794.1| - 0.014 14.4 0.1 0.023 13.7 0.1 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Inhibitor_I69 PF13734.1 gi|298674044|ref|YP_003725794.1| - 0.072 13.1 0.0 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 Spi protease inhibitor THF_DHG_CYH_C PF02882.14 gi|298674045|ref|YP_003725795.1| - 1.2e-64 216.2 4.6 1.6e-64 215.8 3.2 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|298674045|ref|YP_003725795.1| - 9.6e-41 138.4 1.4 1.5e-40 137.8 1.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AdoHcyase_NAD PF00670.16 gi|298674045|ref|YP_003725795.1| - 0.095 12.5 3.0 4.4 7.1 2.1 2.4 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pterin_bind PF00809.17 gi|298674046|ref|YP_003725796.1| - 1.7e-40 138.6 0.5 3.2e-40 137.7 0.4 1.5 1 0 0 1 1 1 1 Pterin binding enzyme MTHFR_C PF12225.3 gi|298674047|ref|YP_003725797.1| - 3.6e-34 116.1 1.3 3.6e-34 116.1 0.9 1.9 2 1 1 3 3 3 1 Methylene-tetrahydrofolate reductase C terminal Ole-e-6 PF09253.5 gi|298674047|ref|YP_003725797.1| - 0.1 12.2 1.4 0.48 10.0 0.1 2.6 2 0 0 2 2 2 0 Pollen allergen ole e 6 zf-Apc11 PF12861.2 gi|298674047|ref|YP_003725797.1| - 0.16 11.7 3.1 0.42 10.4 2.2 1.7 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger MTHFR PF02219.12 gi|298674048|ref|YP_003725798.1| - 8.2e-38 130.1 0.1 9.2e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase Hydrolase_like PF13242.1 gi|298674048|ref|YP_003725798.1| - 0.0015 18.1 0.0 0.0029 17.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like ThiC PF01964.13 gi|298674049|ref|YP_003725799.1| - 1.3e-146 488.3 0.2 1.5e-146 488.2 0.1 1.0 1 0 0 1 1 1 1 ThiC family Cyanate_lyase PF02560.9 gi|298674049|ref|YP_003725799.1| - 0.1 12.1 0.1 0.41 10.2 0.0 2.0 2 0 0 2 2 2 0 Cyanate lyase C-terminal domain F420_ligase PF01996.11 gi|298674050|ref|YP_003725800.1| - 4.5e-63 212.3 0.2 5.2e-63 212.1 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase L_biotic_typeA PF04604.8 gi|298674050|ref|YP_003725800.1| - 0.035 13.7 0.2 0.075 12.6 0.1 1.5 1 0 0 1 1 1 0 Type-A lantibiotic Thioredoxin PF00085.15 gi|298674051|ref|YP_003725801.1| - 5e-25 87.1 0.0 5.3e-25 87.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|298674051|ref|YP_003725801.1| - 1.2e-11 44.6 0.0 8.7e-08 32.1 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|298674051|ref|YP_003725801.1| - 1.2e-11 44.7 0.1 5e-11 42.7 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|298674051|ref|YP_003725801.1| - 4.5e-07 29.6 0.1 5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|298674051|ref|YP_003725801.1| - 3.1e-06 27.0 0.0 4.8e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.5 gi|298674051|ref|YP_003725801.1| - 7.2e-06 25.6 0.0 0.001 18.6 0.0 2.0 1 1 1 2 2 2 1 Redoxin Thioredoxin_7 PF13899.1 gi|298674051|ref|YP_003725801.1| - 2.6e-05 24.1 0.1 4.2e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|298674051|ref|YP_003725801.1| - 0.00015 21.4 0.0 0.061 13.0 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA family KaiB PF07689.7 gi|298674051|ref|YP_003725801.1| - 0.00042 19.7 0.0 0.00048 19.5 0.0 1.1 1 0 0 1 1 1 1 KaiB domain Thioredoxin_9 PF14595.1 gi|298674051|ref|YP_003725801.1| - 0.00061 19.3 0.0 0.00073 19.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|298674051|ref|YP_003725801.1| - 0.0038 17.4 0.0 0.0043 17.2 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TrbC_Ftype PF09673.5 gi|298674051|ref|YP_003725801.1| - 0.011 15.3 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein TraF PF13728.1 gi|298674051|ref|YP_003725801.1| - 0.013 15.0 0.0 0.027 13.9 0.0 1.5 1 1 1 2 2 2 0 F plasmid transfer operon protein DSBA PF01323.15 gi|298674051|ref|YP_003725801.1| - 0.014 14.9 0.2 0.074 12.5 0.0 1.8 1 1 1 2 2 2 0 DSBA-like thioredoxin domain HyaE PF07449.6 gi|298674051|ref|YP_003725801.1| - 0.029 14.2 0.0 0.035 14.0 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|298674051|ref|YP_003725801.1| - 0.13 11.8 0.1 7.2 6.1 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Thioredoxin_4 PF13462.1 gi|298674051|ref|YP_003725801.1| - 0.13 12.2 0.2 1.1 9.2 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin Lactamase_B_2 PF12706.2 gi|298674052|ref|YP_003725802.1| - 2e-11 43.7 0.4 2.3e-10 40.3 0.2 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|298674052|ref|YP_003725802.1| - 0.00066 19.4 0.1 0.0022 17.7 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298674052|ref|YP_003725802.1| - 0.0029 17.2 3.2 0.01 15.4 2.2 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|298674052|ref|YP_003725802.1| - 0.077 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase FUSC_2 PF13515.1 gi|298674053|ref|YP_003725803.1| - 0.015 15.1 1.2 0.017 15.0 0.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein-like Rab5ip PF07019.7 gi|298674053|ref|YP_003725803.1| - 0.56 10.3 6.9 0.99 9.5 4.8 1.4 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) ABC_tran PF00005.22 gi|298674054|ref|YP_003725804.1| - 1.9e-42 144.8 0.0 1.4e-20 73.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|298674054|ref|YP_003725804.1| - 1.8e-17 63.3 6.7 8.9e-11 41.4 0.2 3.4 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|298674054|ref|YP_003725804.1| - 1.1e-13 51.8 7.1 0.0015 18.5 0.2 4.3 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|298674054|ref|YP_003725804.1| - 3.5e-12 45.6 4.3 6.9e-12 44.7 2.9 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|298674054|ref|YP_003725804.1| - 1e-07 31.2 5.1 1e-07 31.2 3.5 2.4 3 0 0 3 3 2 1 4Fe-4S binding domain DUF258 PF03193.11 gi|298674054|ref|YP_003725804.1| - 3.1e-07 29.6 0.1 0.0083 15.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|298674054|ref|YP_003725804.1| - 3.3e-06 27.5 2.0 0.0018 18.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|298674054|ref|YP_003725804.1| - 5.5e-06 25.8 2.0 0.0089 15.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|298674054|ref|YP_003725804.1| - 7.7e-06 26.7 1.0 0.058 14.2 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|298674054|ref|YP_003725804.1| - 1.1e-05 24.9 0.7 0.04 13.3 0.0 3.6 3 1 0 3 3 3 1 AAA domain Rad17 PF03215.10 gi|298674054|ref|YP_003725804.1| - 1.3e-05 24.0 0.0 0.057 12.0 0.0 2.5 2 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein Fer4_6 PF12837.2 gi|298674054|ref|YP_003725804.1| - 2.3e-05 24.0 12.1 3.5e-05 23.4 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain RNA_helicase PF00910.17 gi|298674054|ref|YP_003725804.1| - 2.5e-05 24.4 0.0 0.41 10.8 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA PF00004.24 gi|298674054|ref|YP_003725804.1| - 4.2e-05 23.7 0.0 0.37 10.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_7 PF12838.2 gi|298674054|ref|YP_003725804.1| - 5.4e-05 23.4 7.4 8.7e-05 22.8 4.4 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|298674054|ref|YP_003725804.1| - 8e-05 22.7 2.2 0.21 11.5 0.0 2.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.1 gi|298674054|ref|YP_003725804.1| - 0.00016 20.8 0.1 0.073 12.1 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain Fer4_21 PF14697.1 gi|298674054|ref|YP_003725804.1| - 0.00021 21.0 6.6 0.00037 20.2 4.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain NACHT PF05729.7 gi|298674054|ref|YP_003725804.1| - 0.00031 20.4 0.1 0.033 13.8 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Fer4_9 PF13187.1 gi|298674054|ref|YP_003725804.1| - 0.00031 20.9 10.1 0.00069 19.8 7.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674054|ref|YP_003725804.1| - 0.00055 19.6 3.4 0.00055 19.6 2.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain MMR_HSR1 PF01926.18 gi|298674054|ref|YP_003725804.1| - 0.002 18.0 1.7 2.2 8.2 0.4 3.1 2 2 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|298674054|ref|YP_003725804.1| - 0.0028 17.7 0.2 0.5 10.5 0.0 2.8 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|298674054|ref|YP_003725804.1| - 0.0031 17.4 1.5 5.4 6.9 0.0 3.5 2 1 1 3 3 3 0 AAA domain MobB PF03205.9 gi|298674054|ref|YP_003725804.1| - 0.0044 16.7 1.2 0.84 9.3 0.0 3.2 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_10 PF13237.1 gi|298674054|ref|YP_003725804.1| - 0.0054 16.5 10.8 0.0092 15.7 1.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674054|ref|YP_003725804.1| - 0.008 16.9 0.5 0.008 16.9 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain AAA_18 PF13238.1 gi|298674054|ref|YP_003725804.1| - 0.0092 16.2 1.2 6.6 7.0 0.1 3.2 3 2 0 3 3 2 0 AAA domain VirE PF05272.6 gi|298674054|ref|YP_003725804.1| - 0.011 15.1 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E AAA_33 PF13671.1 gi|298674054|ref|YP_003725804.1| - 0.012 15.4 0.7 1.1 9.0 0.0 3.1 4 0 0 4 4 2 0 AAA domain Miro PF08477.8 gi|298674054|ref|YP_003725804.1| - 0.013 16.0 0.0 0.72 10.3 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein Fer4_4 PF12800.2 gi|298674054|ref|YP_003725804.1| - 0.02 15.2 2.9 0.02 15.2 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF87 PF01935.12 gi|298674054|ref|YP_003725804.1| - 0.024 14.4 2.6 3.5 7.3 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function DUF87 ArgK PF03308.11 gi|298674054|ref|YP_003725804.1| - 0.027 13.2 3.4 1.4 7.6 0.1 2.2 2 0 0 2 2 2 0 ArgK protein Spore_IV_A PF09547.5 gi|298674054|ref|YP_003725804.1| - 0.028 13.1 0.5 2 7.0 0.1 2.4 2 1 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) NTPase_1 PF03266.10 gi|298674054|ref|YP_003725804.1| - 0.036 13.7 0.6 6.1 6.5 0.0 2.8 2 0 0 2 2 2 0 NTPase Septin PF00735.13 gi|298674054|ref|YP_003725804.1| - 0.041 12.8 0.0 4.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Septin AAA_5 PF07728.9 gi|298674054|ref|YP_003725804.1| - 0.042 13.5 0.1 12 5.6 0.0 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|298674054|ref|YP_003725804.1| - 0.052 12.4 0.0 1.3 7.8 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_24 PF13479.1 gi|298674054|ref|YP_003725804.1| - 0.07 12.6 0.4 13 5.2 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|298674054|ref|YP_003725804.1| - 0.12 11.7 5.2 3.8 6.8 0.1 3.2 4 0 0 4 4 4 0 AAA-like domain Fer4_8 PF13183.1 gi|298674054|ref|YP_003725804.1| - 0.12 12.4 6.9 0.31 11.1 4.8 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_28 PF13521.1 gi|298674054|ref|YP_003725804.1| - 0.14 12.1 0.0 7.3 6.5 0.0 2.6 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|298674054|ref|YP_003725804.1| - 0.15 11.5 0.1 5.7 6.3 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Fer4_11 PF13247.1 gi|298674054|ref|YP_003725804.1| - 0.21 11.5 4.5 0.38 10.6 3.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674054|ref|YP_003725804.1| - 3.7 8.0 9.8 6.3 7.3 5.9 1.9 1 1 1 2 2 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674054|ref|YP_003725804.1| - 5.8 7.3 10.9 56 4.1 7.6 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298674054|ref|YP_003725804.1| - 5.9 7.7 15.4 0.055 14.0 3.9 2.4 2 0 0 2 2 1 0 4Fe-4S binding domain TM2 PF05154.11 gi|298674055|ref|YP_003725805.1| - 1.4e-05 25.1 4.0 3.4e-05 23.9 2.8 1.7 1 1 0 1 1 1 1 TM2 domain TLC PF03219.9 gi|298674055|ref|YP_003725805.1| - 0.017 13.6 0.5 0.017 13.6 0.4 1.0 1 0 0 1 1 1 0 TLC ATP/ADP transporter HemY_N PF07219.8 gi|298674055|ref|YP_003725805.1| - 0.035 13.6 0.0 0.045 13.3 0.0 1.1 1 0 0 1 1 1 0 HemY protein N-terminus Tic20 PF09685.5 gi|298674055|ref|YP_003725805.1| - 0.057 13.3 2.9 0.064 13.2 2.0 1.3 1 1 0 1 1 1 0 Tic20-like protein Adeno_E3_14_5 PF04834.7 gi|298674055|ref|YP_003725805.1| - 0.067 13.6 0.3 0.085 13.2 0.2 1.2 1 0 0 1 1 1 0 Early E3 14.5 kDa protein DUF2116 PF09889.4 gi|298674055|ref|YP_003725805.1| - 0.4 10.4 1.5 0.55 10.0 1.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF4234 PF14018.1 gi|298674055|ref|YP_003725805.1| - 0.44 10.3 3.3 1.1 9.0 2.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) DUF4538 PF15061.1 gi|298674055|ref|YP_003725805.1| - 0.52 9.6 2.4 0.97 8.7 1.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4538) MatE PF01554.13 gi|298674056|ref|YP_003725806.1| - 6.9e-49 165.5 38.9 4.3e-26 91.4 9.8 3.1 3 1 1 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|298674056|ref|YP_003725806.1| - 4.9e-11 42.6 21.4 4.3e-10 39.5 6.2 5.2 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF4418 PF14387.1 gi|298674057|ref|YP_003725807.1| - 1.9 8.2 7.9 2.2 8.0 5.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) Arif-1 PF06770.6 gi|298674057|ref|YP_003725807.1| - 2 7.7 6.5 2.1 7.6 4.2 1.2 1 1 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) DUF11 PF01345.13 gi|298674058|ref|YP_003725808.1| - 5.7e-10 39.1 3.1 8e-06 25.8 0.0 4.3 4 0 0 4 4 4 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|298674058|ref|YP_003725808.1| - 2.3e-06 26.9 10.1 0.00075 18.7 0.3 3.1 3 1 1 4 4 4 2 Translocon-associated protein beta (TRAPB) Cupredoxin_1 PF13473.1 gi|298674058|ref|YP_003725808.1| - 2.1e-05 24.3 2.2 0.035 14.0 0.1 3.6 1 1 1 2 2 2 2 Cupredoxin-like domain CARDB PF07705.6 gi|298674058|ref|YP_003725808.1| - 2.9e-05 24.0 20.3 0.12 12.4 0.4 4.0 4 0 0 4 4 4 3 CARDB DUF3127 PF11325.3 gi|298674058|ref|YP_003725808.1| - 0.0016 18.4 1.5 3.1 7.8 0.2 3.7 3 0 0 3 3 3 2 Domain of unknown function (DUF3127) CarboxypepD_reg PF13620.1 gi|298674058|ref|YP_003725808.1| - 0.012 15.6 0.2 2.1 8.4 0.0 3.8 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain Motile_Sperm PF00635.21 gi|298674058|ref|YP_003725808.1| - 0.11 12.1 0.0 0.11 12.1 0.0 3.9 5 0 0 5 5 5 0 MSP (Major sperm protein) domain MS_channel PF00924.13 gi|298674059|ref|YP_003725809.1| - 1.5e-48 164.8 1.1 2.1e-48 164.4 0.8 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|298674059|ref|YP_003725809.1| - 0.00043 19.8 2.0 0.00043 19.8 1.4 2.4 2 1 0 2 2 2 1 Conserved TM helix ABC2_membrane_4 PF12730.2 gi|298674059|ref|YP_003725809.1| - 0.013 14.6 11.8 0.017 14.3 8.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298674059|ref|YP_003725809.1| - 0.24 10.2 8.3 0.31 9.8 5.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298674059|ref|YP_003725809.1| - 9.5 5.1 15.2 14 4.5 10.5 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Iso_dh PF00180.15 gi|298674060|ref|YP_003725810.1| - 3.8e-93 312.2 0.0 4.5e-93 311.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|298674061|ref|YP_003725811.1| - 3.9e-19 69.0 0.1 8.1e-19 68.0 0.1 1.6 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|298674061|ref|YP_003725811.1| - 0.00054 19.4 0.1 0.011 15.1 0.1 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus DUF1770 PF08589.5 gi|298674061|ref|YP_003725811.1| - 0.088 13.4 0.0 0.15 12.7 0.0 1.2 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1770) MFS_1 PF07690.11 gi|298674062|ref|YP_003725812.1| - 1.2e-56 192.0 80.6 4.1e-47 160.5 31.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|298674062|ref|YP_003725812.1| - 1.7e-11 43.1 35.0 7.3e-06 24.6 14.8 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|298674062|ref|YP_003725812.1| - 1.9e-11 43.2 43.9 3.5e-10 39.0 11.0 3.5 1 1 1 3 3 3 3 Sugar (and other) transporter OATP PF03137.15 gi|298674062|ref|YP_003725812.1| - 1.5 6.7 29.2 0.015 13.3 2.7 3.9 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family FAD_binding_2 PF00890.19 gi|298674063|ref|YP_003725813.1| - 1.5e-15 56.9 0.0 1.5e-06 27.3 0.0 3.1 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|298674063|ref|YP_003725813.1| - 7.5e-13 48.1 1.6 7.3e-05 21.7 0.0 3.2 3 0 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|298674063|ref|YP_003725813.1| - 2.5e-11 43.8 0.1 4.1e-06 26.8 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|298674063|ref|YP_003725813.1| - 3e-11 42.8 0.0 6.1e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|298674063|ref|YP_003725813.1| - 9.8e-10 37.4 0.1 1.3e-06 27.1 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|298674063|ref|YP_003725813.1| - 2.1e-07 30.2 0.1 7.1e-06 25.2 0.0 2.4 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|298674063|ref|YP_003725813.1| - 7.1e-06 25.9 0.0 5.4e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|298674063|ref|YP_003725813.1| - 1.2e-05 25.6 0.0 0.042 14.2 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|298674063|ref|YP_003725813.1| - 3.9e-05 22.8 0.0 6.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|298674063|ref|YP_003725813.1| - 5.2e-05 22.3 0.0 0.00038 19.4 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|298674063|ref|YP_003725813.1| - 0.00018 20.7 0.0 0.019 14.0 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|298674063|ref|YP_003725813.1| - 0.0089 16.1 0.1 0.036 14.1 0.0 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|298674063|ref|YP_003725813.1| - 0.047 11.9 0.0 2.2 6.4 0.0 2.3 2 0 0 2 2 2 0 GDP dissociation inhibitor Trp_halogenase PF04820.9 gi|298674063|ref|YP_003725813.1| - 0.097 11.2 0.1 0.21 10.1 0.0 1.5 2 0 0 2 2 2 0 Tryptophan halogenase DUF1297 PF06973.7 gi|298674064|ref|YP_003725814.1| - 1.2e-65 220.3 0.1 1.7e-65 219.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|298674064|ref|YP_003725814.1| - 8.7e-46 154.7 0.0 1.6e-45 153.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|298674064|ref|YP_003725814.1| - 8.4e-06 25.7 0.1 4.1e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|298674064|ref|YP_003725814.1| - 1.3e-05 24.9 0.0 0.011 15.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|298674064|ref|YP_003725814.1| - 0.029 13.6 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PseudoU_synth_1 PF01416.15 gi|298674065|ref|YP_003725815.1| - 7.2e-33 113.1 0.0 1.2e-19 70.6 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase UPF0020 PF01170.13 gi|298674066|ref|YP_003725816.1| - 3.7e-30 104.8 0.0 5.4e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|298674066|ref|YP_003725816.1| - 2.4e-15 56.6 1.4 2.9e-15 56.4 0.5 1.4 2 0 0 2 2 2 1 THUMP domain Methyltransf_26 PF13659.1 gi|298674066|ref|YP_003725816.1| - 1.8e-10 40.8 0.0 2.8e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674066|ref|YP_003725816.1| - 6.1e-06 26.6 0.1 0.00049 20.5 0.0 3.0 2 1 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.11 gi|298674066|ref|YP_003725816.1| - 1.4e-05 24.3 0.0 0.00015 20.9 0.0 2.3 2 0 0 2 2 2 1 N-6 DNA Methylase N6_N4_Mtase PF01555.13 gi|298674066|ref|YP_003725816.1| - 3.9e-05 23.2 0.0 0.19 11.1 0.0 2.4 2 1 0 2 2 2 2 DNA methylase Methyltransf_31 PF13847.1 gi|298674066|ref|YP_003725816.1| - 0.00074 19.1 0.2 0.0032 17.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|298674066|ref|YP_003725816.1| - 0.037 13.4 0.0 0.072 12.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Lipoprotein_Ltp PF07553.6 gi|298674066|ref|YP_003725816.1| - 1.3 8.9 3.8 0.63 9.9 0.7 1.9 2 0 0 2 2 2 0 Host cell surface-exposed lipoprotein DUF1805 PF08827.6 gi|298674067|ref|YP_003725817.1| - 1.4e-27 95.1 0.9 2.2e-27 94.6 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) IMS PF00817.15 gi|298674067|ref|YP_003725817.1| - 0.00084 19.1 0.0 0.001 18.8 0.0 1.1 1 0 0 1 1 1 1 impB/mucB/samB family DUF4253 PF14062.1 gi|298674067|ref|YP_003725817.1| - 0.081 12.5 0.0 0.095 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) Prenyltrans_2 PF13249.1 gi|298674068|ref|YP_003725818.1| - 8.8e-15 55.0 20.9 1.9e-08 34.6 1.0 4.0 2 1 3 5 5 5 4 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|298674068|ref|YP_003725818.1| - 1.7e-09 37.6 10.1 0.0099 15.8 0.1 4.9 3 1 1 4 4 4 2 Prenyltransferase-like A2M_comp PF07678.9 gi|298674068|ref|YP_003725818.1| - 0.00024 20.4 4.1 0.2 10.8 0.3 3.5 1 1 2 3 3 3 2 A-macroglobulin complement component Sec61_beta PF03911.11 gi|298674069|ref|YP_003725819.1| - 7.9e-07 28.7 0.0 9.7e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family OrfB_Zn_ribbon PF07282.6 gi|298674070|ref|YP_003725820.1| - 1.7e-25 88.4 0.3 6e-25 86.6 0.0 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298674070|ref|YP_003725820.1| - 1e-08 34.8 6.1 1.5e-08 34.3 4.2 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|298674070|ref|YP_003725820.1| - 0.004 16.8 5.0 0.035 13.8 0.6 3.0 3 1 0 3 3 3 1 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|298674070|ref|YP_003725820.1| - 0.018 14.7 5.3 0.11 12.1 1.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CS PF04969.11 gi|298674070|ref|YP_003725820.1| - 0.07 13.6 4.8 0.2 12.2 0.3 2.9 2 1 0 2 2 2 0 CS domain Zn_Tnp_IS1595 PF12760.2 gi|298674070|ref|YP_003725820.1| - 0.076 12.8 0.6 0.076 12.8 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|298674070|ref|YP_003725820.1| - 0.41 10.4 4.1 0.38 10.6 1.0 2.0 2 1 1 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|298674070|ref|YP_003725820.1| - 2.5 7.7 9.7 2.8 7.5 4.5 2.8 2 1 1 3 3 3 0 zinc-ribbon domain SRP9-21 PF05486.7 gi|298674070|ref|YP_003725820.1| - 2.6 7.8 8.8 29 4.4 0.0 3.6 2 2 1 3 3 3 0 Signal recognition particle 9 kDa protein (SRP9) DNA_RNApol_7kD PF03604.8 gi|298674070|ref|YP_003725820.1| - 3.6 7.1 6.7 1.3 8.5 1.8 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|298674070|ref|YP_003725820.1| - 4.1 7.5 8.9 3.7 7.6 0.2 4.3 4 1 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|298674070|ref|YP_003725820.1| - 6.1 6.5 6.4 1.6 8.3 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298674070|ref|YP_003725820.1| - 6.6 6.5 6.2 2 8.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298674070|ref|YP_003725820.1| - 8.2 5.7 12.4 0.094 11.9 2.1 2.6 3 1 1 4 4 4 0 zinc-ribbon domain IF-2B PF01008.12 gi|298674071|ref|YP_003725821.1| - 1.2e-88 296.8 0.1 1.4e-88 296.5 0.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Peroxin-22 PF12827.2 gi|298674071|ref|YP_003725821.1| - 0.018 14.7 0.1 0.054 13.2 0.0 1.8 2 0 0 2 2 2 0 Peroxisomal biogenesis protein family Methyltransf_18 PF12847.2 gi|298674072|ref|YP_003725822.1| - 2e-12 47.6 0.0 3.7e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674072|ref|YP_003725822.1| - 9.1e-12 44.8 0.0 1.3e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|298674072|ref|YP_003725822.1| - 5.1e-11 42.5 0.0 4.2e-09 36.2 0.0 2.1 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.15 gi|298674072|ref|YP_003725822.1| - 2.7e-08 33.1 0.0 4e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|298674072|ref|YP_003725822.1| - 7e-08 32.0 0.1 1.5e-07 30.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|298674072|ref|YP_003725822.1| - 2.5e-07 30.4 0.0 3.3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|298674072|ref|YP_003725822.1| - 3.5e-06 26.3 0.1 5.1e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|298674072|ref|YP_003725822.1| - 6.2e-06 26.2 0.0 1.8e-05 24.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674072|ref|YP_003725822.1| - 1.8e-05 24.5 0.0 8.1e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674072|ref|YP_003725822.1| - 2.4e-05 24.7 0.0 5.4e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|298674072|ref|YP_003725822.1| - 3.3e-05 23.3 0.2 0.0016 17.8 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|298674072|ref|YP_003725822.1| - 3.9e-05 22.8 0.0 5.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GidB PF02527.10 gi|298674072|ref|YP_003725822.1| - 0.00017 20.8 0.0 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.7 gi|298674072|ref|YP_003725822.1| - 0.00097 19.5 0.1 0.0025 18.2 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|298674072|ref|YP_003725822.1| - 0.009 15.3 0.3 0.1 11.9 0.2 2.1 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.1 gi|298674072|ref|YP_003725822.1| - 0.0091 16.3 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|298674072|ref|YP_003725822.1| - 0.011 15.2 0.1 0.019 14.4 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CMAS PF02353.15 gi|298674072|ref|YP_003725822.1| - 0.024 13.7 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|298674072|ref|YP_003725822.1| - 0.024 14.2 0.1 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein N6_N4_Mtase PF01555.13 gi|298674072|ref|YP_003725822.1| - 0.05 13.0 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 DNA methylase Methyltransf_32 PF13679.1 gi|298674072|ref|YP_003725822.1| - 0.094 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|298674072|ref|YP_003725822.1| - 0.12 11.7 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Rad51 PF08423.6 gi|298674073|ref|YP_003725823.1| - 6.4e-35 120.2 0.0 7.2e-35 120.1 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|298674073|ref|YP_003725823.1| - 1.6e-12 47.2 0.0 2.3e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|298674073|ref|YP_003725823.1| - 2.8e-11 42.9 0.4 7.7e-11 41.5 0.3 1.7 1 1 0 1 1 1 1 KaiC RecA PF00154.16 gi|298674073|ref|YP_003725823.1| - 4.2e-11 42.4 0.0 4.9e-11 42.2 0.0 1.0 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Zot PF05707.7 gi|298674073|ref|YP_003725823.1| - 9.5e-08 31.7 0.0 1.1e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_31 PF13614.1 gi|298674073|ref|YP_003725823.1| - 0.00018 21.4 0.0 0.00027 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|298674073|ref|YP_003725823.1| - 0.00021 20.4 0.1 0.00024 20.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|298674073|ref|YP_003725823.1| - 0.00029 20.2 0.0 0.00056 19.3 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|298674073|ref|YP_003725823.1| - 0.00035 19.5 0.1 0.25 10.1 0.0 2.4 2 1 1 3 3 3 2 DnaB-like helicase C terminal domain KTI12 PF08433.5 gi|298674073|ref|YP_003725823.1| - 0.0011 18.2 0.0 0.0018 17.5 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|298674073|ref|YP_003725823.1| - 0.0013 18.2 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.1 gi|298674073|ref|YP_003725823.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298674073|ref|YP_003725823.1| - 0.0016 18.7 0.0 0.0027 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|298674073|ref|YP_003725823.1| - 0.003 17.4 0.1 0.0042 16.9 0.1 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Arch_ATPase PF01637.13 gi|298674073|ref|YP_003725823.1| - 0.0032 17.2 0.1 0.0043 16.7 0.1 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|298674073|ref|YP_003725823.1| - 0.0033 17.5 0.1 0.007 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain KAP_NTPase PF07693.9 gi|298674073|ref|YP_003725823.1| - 0.011 14.7 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MobB PF03205.9 gi|298674073|ref|YP_003725823.1| - 0.02 14.5 0.3 0.047 13.3 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|298674073|ref|YP_003725823.1| - 0.021 14.6 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|298674073|ref|YP_003725823.1| - 0.024 14.8 0.1 0.047 13.8 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|298674073|ref|YP_003725823.1| - 0.03 13.7 0.1 0.037 13.4 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|298674073|ref|YP_003725823.1| - 0.033 15.0 0.0 0.06 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|298674073|ref|YP_003725823.1| - 0.035 13.5 0.0 0.35 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain GvpD PF07088.6 gi|298674073|ref|YP_003725823.1| - 0.043 12.1 0.0 0.071 11.4 0.0 1.3 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_19 PF13245.1 gi|298674073|ref|YP_003725823.1| - 0.046 13.4 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain Bac_DnaA PF00308.13 gi|298674073|ref|YP_003725823.1| - 0.063 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein PhoH PF02562.11 gi|298674073|ref|YP_003725823.1| - 0.09 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|298674073|ref|YP_003725823.1| - 0.099 12.9 1.0 0.23 11.7 0.7 1.7 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|298674073|ref|YP_003725823.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.6 1 1 0 1 1 1 0 RNA helicase Glutaredoxin PF00462.19 gi|298674074|ref|YP_003725824.1| - 3.6e-10 39.6 0.0 4.6e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|298674074|ref|YP_003725824.1| - 6.8e-06 26.2 0.0 7.5e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) ArsC PF03960.10 gi|298674074|ref|YP_003725824.1| - 0.028 14.4 0.1 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 ArsC family Thioredoxin_2 PF13098.1 gi|298674074|ref|YP_003725824.1| - 0.044 13.9 0.1 0.053 13.7 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|298674074|ref|YP_003725824.1| - 0.069 12.9 0.2 0.1 12.4 0.2 1.5 1 1 0 1 1 1 0 Thioredoxin domain GST_N_3 PF13417.1 gi|298674074|ref|YP_003725824.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain NRDD PF13597.1 gi|298674075|ref|YP_003725825.1| - 4.2e-154 513.6 0.0 5e-154 513.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|298674075|ref|YP_003725825.1| - 0.005 17.2 0.1 0.011 16.2 0.1 1.5 1 0 0 1 1 1 1 ATP cone domain Radical_SAM PF04055.16 gi|298674076|ref|YP_003725826.1| - 1.4e-19 70.8 0.0 2e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298674076|ref|YP_003725826.1| - 2.7e-11 43.5 0.0 4.4e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298674076|ref|YP_003725826.1| - 7.6e-11 42.2 0.1 1.2e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain CoA_binding_2 PF13380.1 gi|298674077|ref|YP_003725827.1| - 0.0013 18.8 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain DUF2407_C PF13373.1 gi|298674078|ref|YP_003725828.1| - 0.28 11.1 2.9 4.4 7.2 0.1 2.8 1 1 1 3 3 3 0 DUF2407 C-terminal domain GATase_3 PF07685.9 gi|298674079|ref|YP_003725829.1| - 3.7e-42 143.5 0.6 3.7e-42 143.5 0.4 1.8 3 0 0 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|298674079|ref|YP_003725829.1| - 1.1e-26 93.4 0.0 1.8e-26 92.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|298674079|ref|YP_003725829.1| - 1.3e-18 67.3 0.0 4.3e-18 65.6 0.0 1.8 2 1 0 2 2 2 1 AAA domain GATase PF00117.23 gi|298674079|ref|YP_003725829.1| - 8e-06 25.4 0.0 2.8e-05 23.6 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|298674079|ref|YP_003725829.1| - 0.0017 18.0 0.0 0.0039 16.8 0.0 1.5 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DUF3799 PF12684.2 gi|298674079|ref|YP_003725829.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) Methyltransf_18 PF12847.2 gi|298674080|ref|YP_003725830.1| - 1.1e-12 48.4 0.1 1.4e-12 48.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674080|ref|YP_003725830.1| - 2.4e-12 46.6 1.0 3.2e-12 46.2 0.7 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|298674080|ref|YP_003725830.1| - 8.4e-11 41.5 0.3 1.1e-10 41.1 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|298674080|ref|YP_003725830.1| - 1.6e-07 31.0 0.0 2.8e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|298674080|ref|YP_003725830.1| - 2.7e-07 30.0 0.5 5.6e-07 28.9 0.1 1.5 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|298674080|ref|YP_003725830.1| - 8.5e-07 29.0 0.0 1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|298674080|ref|YP_003725830.1| - 9.7e-07 28.0 0.7 3.6e-06 26.1 0.0 1.9 1 1 1 2 2 2 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|298674080|ref|YP_003725830.1| - 9.8e-07 29.0 0.0 1.3e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674080|ref|YP_003725830.1| - 2.1e-06 28.1 0.2 2.9e-06 27.6 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|298674080|ref|YP_003725830.1| - 1.1e-05 25.0 0.1 1.7e-05 24.4 0.1 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.10 gi|298674080|ref|YP_003725830.1| - 1.4e-05 24.5 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|298674080|ref|YP_003725830.1| - 2.9e-05 23.4 0.1 4.7e-05 22.7 0.1 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_15 PF09445.5 gi|298674080|ref|YP_003725830.1| - 3e-05 23.6 0.2 4.2e-05 23.1 0.2 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|298674080|ref|YP_003725830.1| - 5.1e-05 23.6 0.1 7.6e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|298674080|ref|YP_003725830.1| - 0.00015 20.9 0.1 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|298674080|ref|YP_003725830.1| - 0.00016 20.8 0.8 0.00023 20.3 0.2 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|298674080|ref|YP_003725830.1| - 0.00017 21.3 0.0 0.0002 21.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|298674080|ref|YP_003725830.1| - 0.0005 19.7 0.3 0.00065 19.3 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.10 gi|298674080|ref|YP_003725830.1| - 0.00073 18.7 0.1 0.0009 18.4 0.1 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_32 PF13679.1 gi|298674080|ref|YP_003725830.1| - 0.0012 18.5 0.1 0.0023 17.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.14 gi|298674080|ref|YP_003725830.1| - 0.0018 17.6 0.1 0.0024 17.2 0.1 1.1 1 0 0 1 1 1 1 MraW methylase family Methyltransf_24 PF13578.1 gi|298674080|ref|YP_003725830.1| - 0.0051 17.6 0.0 0.0085 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|298674080|ref|YP_003725830.1| - 0.0058 15.6 0.1 0.02 13.9 0.0 1.6 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|298674080|ref|YP_003725830.1| - 0.012 15.1 0.1 0.019 14.4 0.1 1.3 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit MethyltransfD12 PF02086.10 gi|298674080|ref|YP_003725830.1| - 0.017 14.5 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase FtsJ PF01728.14 gi|298674080|ref|YP_003725830.1| - 0.022 14.7 0.4 0.037 14.0 0.3 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_16 PF10294.4 gi|298674080|ref|YP_003725830.1| - 0.034 13.5 0.0 0.04 13.3 0.0 1.3 1 1 0 1 1 1 0 Putative methyltransferase TP_methylase PF00590.15 gi|298674081|ref|YP_003725831.1| - 3.8e-33 114.9 0.0 5.6e-33 114.4 0.0 1.3 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|298674082|ref|YP_003725832.1| - 2.3e-43 148.3 0.0 2.7e-43 148.1 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|298674082|ref|YP_003725832.1| - 0.01 16.0 0.3 0.024 14.8 0.2 1.7 1 1 0 1 1 1 0 Radical SAM superfamily vATP-synt_E PF01991.13 gi|298674082|ref|YP_003725832.1| - 0.14 11.3 0.3 1.6 7.9 0.0 2.1 2 0 0 2 2 2 0 ATP synthase (E/31 kDa) subunit TP_methylase PF00590.15 gi|298674083|ref|YP_003725833.1| - 1.3e-34 119.7 0.0 1.6e-34 119.4 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF318 PF03773.8 gi|298674083|ref|YP_003725833.1| - 0.055 12.4 0.0 0.067 12.1 0.0 1.1 1 0 0 1 1 1 0 Predicted permease CbiC PF02570.10 gi|298674084|ref|YP_003725834.1| - 2.8e-62 209.6 1.0 3.5e-62 209.3 0.7 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase DsbD PF02683.10 gi|298674085|ref|YP_003725835.1| - 7.3e-38 130.2 20.4 9.1e-38 129.9 14.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|298674085|ref|YP_003725835.1| - 2.7e-12 46.8 18.7 3.4e-12 46.5 12.9 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Pox_P21 PF05313.7 gi|298674085|ref|YP_003725835.1| - 2.3 7.4 15.8 0.16 11.1 3.1 2.1 1 1 0 2 2 2 0 Poxvirus P21 membrane protein DUF2910 PF11139.3 gi|298674085|ref|YP_003725835.1| - 8.5 5.4 13.6 0.071 12.2 2.9 2.1 2 1 0 3 3 3 0 Protein of unknown function (DUF2910) Thioredoxin PF00085.15 gi|298674086|ref|YP_003725836.1| - 6.2e-15 54.7 0.1 8.2e-15 54.3 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|298674086|ref|YP_003725836.1| - 6.9e-08 32.5 0.1 8.3e-07 29.0 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin-like Redoxin PF08534.5 gi|298674086|ref|YP_003725836.1| - 0.00014 21.3 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|298674086|ref|YP_003725836.1| - 0.00021 21.4 0.1 0.0005 20.2 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|298674086|ref|YP_003725836.1| - 0.00028 20.6 0.1 0.00067 19.4 0.1 1.7 2 0 0 2 2 2 1 Thioredoxin domain DIM1 PF02966.11 gi|298674086|ref|YP_003725836.1| - 0.00038 19.9 0.2 0.00059 19.3 0.1 1.4 1 1 0 1 1 1 1 Mitosis protein DIM1 TraF PF13728.1 gi|298674086|ref|YP_003725836.1| - 0.0011 18.5 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_6 PF13848.1 gi|298674086|ref|YP_003725836.1| - 0.0012 18.6 0.0 0.0015 18.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|298674086|ref|YP_003725836.1| - 0.0012 18.4 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.1 gi|298674086|ref|YP_003725836.1| - 0.0041 17.1 0.0 0.0075 16.2 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like TrbC_Ftype PF09673.5 gi|298674086|ref|YP_003725836.1| - 0.0066 16.0 0.1 0.0098 15.4 0.0 1.3 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein Thioredoxin_9 PF14595.1 gi|298674086|ref|YP_003725836.1| - 0.0097 15.4 0.4 0.017 14.6 0.3 1.3 1 1 0 1 1 1 1 Thioredoxin DUF929 PF06053.6 gi|298674086|ref|YP_003725836.1| - 0.057 12.5 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF929) DUF953 PF06110.6 gi|298674086|ref|YP_003725836.1| - 0.13 11.7 0.2 0.31 10.4 0.1 1.7 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF953) RibD_C PF01872.12 gi|298674087|ref|YP_003725837.1| - 5.1e-53 179.6 0.0 5.8e-53 179.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain CBS PF00571.23 gi|298674088|ref|YP_003725838.1| - 2.3e-43 145.6 12.0 5.9e-14 51.5 1.2 4.2 4 0 0 4 4 4 4 CBS domain Usp PF00582.21 gi|298674089|ref|YP_003725839.1| - 9.9e-39 132.7 0.0 1.1e-38 132.5 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|298674090|ref|YP_003725840.1| - 2.3e-21 76.7 0.0 3.3e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|298674090|ref|YP_003725840.1| - 2.5e-11 44.1 0.0 5.5e-10 39.7 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|298674090|ref|YP_003725840.1| - 5.5e-10 39.0 0.0 8.8e-07 28.4 0.0 3.1 1 1 1 3 3 3 2 Amidohydrolase family A_deaminase PF00962.17 gi|298674090|ref|YP_003725840.1| - 1.8e-08 33.7 0.0 2.6e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|298674090|ref|YP_003725840.1| - 5.4e-05 22.9 0.0 0.00015 21.4 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase UPF0081 PF03652.10 gi|298674090|ref|YP_003725840.1| - 0.035 14.2 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) DUF167 PF02594.11 gi|298674092|ref|YP_003725842.1| - 3.7e-20 71.6 1.0 4.6e-20 71.3 0.7 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 PASTA PF03793.14 gi|298674092|ref|YP_003725842.1| - 0.042 13.4 0.1 0.55 9.9 0.0 2.3 2 0 0 2 2 2 0 PASTA domain Phosphoprotein PF00922.12 gi|298674092|ref|YP_003725842.1| - 0.062 12.5 0.1 0.075 12.2 0.1 1.1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein F_bP_aldolase PF01116.15 gi|298674093|ref|YP_003725843.1| - 1e-25 90.4 0.0 1.3e-25 90.0 0.0 1.1 1 0 0 1 1 1 1 Fructose-bisphosphate aldolase class-II Tagatose_6_P_K PF08013.6 gi|298674093|ref|YP_003725843.1| - 4.9e-10 38.4 0.0 7.6e-10 37.8 0.0 1.3 1 0 0 1 1 1 1 Tagatose 6 phosphate kinase UPF0066 PF01980.11 gi|298674094|ref|YP_003725844.1| - 1.9e-40 137.5 0.0 2.6e-40 137.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 FmdE PF02663.9 gi|298674095|ref|YP_003725845.1| - 1e-42 145.1 0.0 1.4e-42 144.7 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|298674095|ref|YP_003725845.1| - 1.5e-07 31.0 0.8 2.5e-07 30.3 0.5 1.4 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger DUF4428 PF14471.1 gi|298674095|ref|YP_003725845.1| - 4.1 7.2 7.2 2.5 7.9 2.9 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4428) Toprim PF01751.17 gi|298674096|ref|YP_003725846.1| - 1.1e-05 25.2 0.2 8.1e-05 22.5 0.1 2.4 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|298674096|ref|YP_003725846.1| - 1.2e-05 25.2 0.0 2.2e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|298674096|ref|YP_003725846.1| - 0.0017 18.6 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Toprim-like GBP_repeat PF02526.9 gi|298674096|ref|YP_003725846.1| - 0.081 12.3 0.2 0.18 11.1 0.1 1.6 1 0 0 1 1 1 0 Glycophorin-binding protein DUF356 PF04009.7 gi|298674097|ref|YP_003725847.1| - 2.1e-40 137.0 0.3 2.6e-40 136.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) P5CR_dimer PF14748.1 gi|298674098|ref|YP_003725848.1| - 2.6e-41 139.9 0.1 4e-41 139.3 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|298674098|ref|YP_003725848.1| - 1.3e-20 73.6 1.0 2.6e-20 72.6 0.4 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|298674098|ref|YP_003725848.1| - 1.9e-08 34.2 0.6 8.6e-08 32.1 0.4 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|298674098|ref|YP_003725848.1| - 5.3e-06 26.2 1.9 1.9e-05 24.4 1.3 1.9 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|298674098|ref|YP_003725848.1| - 3e-05 23.0 0.4 0.00016 20.6 0.3 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase Semialdhyde_dh PF01118.19 gi|298674098|ref|YP_003725848.1| - 0.00016 21.9 0.1 0.00032 20.9 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|298674098|ref|YP_003725848.1| - 0.0016 17.6 0.1 0.0024 17.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|298674098|ref|YP_003725848.1| - 0.0017 18.2 0.2 0.0034 17.2 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|298674098|ref|YP_003725848.1| - 0.023 15.2 0.0 0.058 13.9 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_C PF03720.10 gi|298674098|ref|YP_003725848.1| - 0.04 14.0 0.0 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.1 gi|298674098|ref|YP_003725848.1| - 0.07 13.3 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding HTH_3 PF01381.17 gi|298674099|ref|YP_003725849.1| - 3.4e-08 33.2 1.4 5.4e-08 32.5 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|298674099|ref|YP_003725849.1| - 2.9e-06 27.3 0.0 4.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|298674099|ref|YP_003725849.1| - 6.2e-06 26.1 1.1 1.3e-05 25.0 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|298674099|ref|YP_003725849.1| - 0.00018 21.0 1.3 0.0003 20.3 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain zf-FCS PF06467.9 gi|298674099|ref|YP_003725849.1| - 0.00047 19.7 2.8 0.15 11.7 0.1 2.4 1 1 1 2 2 2 2 MYM-type Zinc finger with FCS sequence motif DUF2089 PF09862.4 gi|298674099|ref|YP_003725849.1| - 0.0062 16.3 3.6 0.23 11.2 0.2 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF2089) EURL PF06937.6 gi|298674099|ref|YP_003725849.1| - 0.12 11.7 2.7 0.23 10.8 0.9 1.7 1 1 1 2 2 2 0 EURL protein FdhE PF04216.7 gi|298674099|ref|YP_003725849.1| - 1.4 8.6 3.5 1.2 8.8 1.0 1.7 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Glycoprotein_G PF00802.14 gi|298674099|ref|YP_003725849.1| - 2 7.4 9.9 0.089 11.9 1.9 2.0 2 0 0 2 2 2 0 Pneumovirus attachment glycoprotein G DUF775 PF05603.7 gi|298674099|ref|YP_003725849.1| - 2.1 7.7 4.4 2.4 7.6 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF775) AAA PF00004.24 gi|298674100|ref|YP_003725850.1| - 3e-44 150.4 0.2 1.5e-43 148.1 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|298674100|ref|YP_003725850.1| - 4.4e-09 36.1 0.6 6e-08 32.5 0.1 2.8 2 2 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|298674100|ref|YP_003725850.1| - 7.3e-08 32.5 2.6 2.9e-07 30.5 0.0 2.8 3 1 0 3 3 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|298674100|ref|YP_003725850.1| - 1.6e-06 28.2 0.0 3.8e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|298674100|ref|YP_003725850.1| - 6.4e-06 26.9 1.4 0.00013 22.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|298674100|ref|YP_003725850.1| - 1.9e-05 23.7 0.0 4.6e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|298674100|ref|YP_003725850.1| - 4.4e-05 23.1 0.1 8.6e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|298674100|ref|YP_003725850.1| - 7.1e-05 21.9 0.0 0.00022 20.3 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|298674100|ref|YP_003725850.1| - 0.00012 22.2 0.2 0.0072 16.4 0.0 2.6 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|298674100|ref|YP_003725850.1| - 0.00034 19.4 1.0 0.00048 18.9 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus RuvB_N PF05496.7 gi|298674100|ref|YP_003725850.1| - 0.00035 19.7 0.0 0.00089 18.3 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|298674100|ref|YP_003725850.1| - 0.00038 20.4 0.0 0.001 19.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|298674100|ref|YP_003725850.1| - 0.00043 19.7 0.1 0.0013 18.1 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|298674100|ref|YP_003725850.1| - 0.00071 19.8 0.0 0.00071 19.8 0.0 3.3 3 1 0 3 3 1 1 AAA domain AAA_14 PF13173.1 gi|298674100|ref|YP_003725850.1| - 0.0028 17.5 0.4 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|298674100|ref|YP_003725850.1| - 0.0028 16.7 3.6 0.02 14.0 0.0 3.1 2 1 0 3 3 3 1 KaiC AAA_3 PF07726.6 gi|298674100|ref|YP_003725850.1| - 0.0044 16.6 0.0 0.01 15.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|298674100|ref|YP_003725850.1| - 0.0045 16.1 0.1 0.01 15.0 0.1 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|298674100|ref|YP_003725850.1| - 0.0054 16.7 0.0 0.063 13.3 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|298674100|ref|YP_003725850.1| - 0.0057 16.1 0.0 0.15 11.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|298674100|ref|YP_003725850.1| - 0.0058 16.5 0.1 0.014 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|298674100|ref|YP_003725850.1| - 0.0061 15.9 4.6 0.13 11.6 0.3 2.8 2 1 1 3 3 3 1 AAA domain AAA_11 PF13086.1 gi|298674100|ref|YP_003725850.1| - 0.023 14.2 2.9 1 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|298674100|ref|YP_003725850.1| - 0.032 13.1 0.0 0.052 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|298674100|ref|YP_003725850.1| - 0.038 13.7 1.3 0.23 11.1 0.0 2.8 3 1 0 3 3 2 0 NTPase PhoH PF02562.11 gi|298674100|ref|YP_003725850.1| - 0.05 12.8 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.17 gi|298674100|ref|YP_003725850.1| - 0.067 13.3 0.6 0.21 11.7 0.0 2.2 3 0 0 3 3 1 0 RNA helicase NACHT PF05729.7 gi|298674100|ref|YP_003725850.1| - 0.071 12.7 0.2 0.91 9.1 0.0 2.3 1 1 1 2 2 2 0 NACHT domain ResIII PF04851.10 gi|298674100|ref|YP_003725850.1| - 0.15 11.8 0.0 0.15 11.8 0.0 2.2 2 1 0 2 2 1 0 Type III restriction enzyme, res subunit ABC_tran PF00005.22 gi|298674100|ref|YP_003725850.1| - 0.52 10.6 2.5 1.3 9.3 0.0 2.6 2 1 0 2 2 2 0 ABC transporter APG6 PF04111.7 gi|298674100|ref|YP_003725850.1| - 1 8.3 10.6 1.8 7.5 7.3 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|298674100|ref|YP_003725850.1| - 3.2 7.3 4.9 6.8 6.2 3.4 1.6 1 0 0 1 1 1 0 IncA protein DUF2551 PF10826.3 gi|298674101|ref|YP_003725851.1| - 2.2e-29 101.1 1.0 3.3e-29 100.6 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) DUF4284 PF14112.1 gi|298674101|ref|YP_003725851.1| - 0.023 15.1 0.8 0.028 14.8 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4284) DnaJ_CXXCXGXG PF00684.14 gi|298674102|ref|YP_003725852.1| - 4.2e-08 33.1 16.5 7.2e-06 25.9 6.2 2.2 1 1 1 2 2 2 2 DnaJ central domain MSSP PF03940.8 gi|298674102|ref|YP_003725852.1| - 6.1 6.3 10.3 95 2.4 7.2 2.1 1 1 0 1 1 1 0 Male specific sperm protein DUF99 PF01949.11 gi|298674104|ref|YP_003725854.1| - 2.3e-65 219.2 0.0 2.6e-65 219.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PGM_PMM_I PF02878.11 gi|298674105|ref|YP_003725855.1| - 3.3e-42 143.2 0.2 8.3e-42 141.9 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|298674105|ref|YP_003725855.1| - 4.6e-26 91.1 0.0 1e-25 90.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|298674105|ref|YP_003725855.1| - 1e-24 86.7 0.0 2.2e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|298674105|ref|YP_003725855.1| - 2.5e-15 56.2 0.0 8.6e-15 54.5 0.0 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|298674105|ref|YP_003725855.1| - 0.0096 16.4 0.0 0.021 15.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|298674105|ref|YP_003725855.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_29 PF03141.11 gi|298674105|ref|YP_003725855.1| - 0.085 11.1 0.1 0.32 9.2 0.0 1.8 2 0 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Acetyltransf_7 PF13508.1 gi|298674106|ref|YP_003725856.1| - 1.1e-09 38.3 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|298674106|ref|YP_003725856.1| - 2.1e-09 37.2 0.0 2.9e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|298674106|ref|YP_003725856.1| - 5e-07 29.6 0.0 3.3e-05 23.7 0.0 2.1 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|298674106|ref|YP_003725856.1| - 0.00013 21.6 0.0 0.00021 20.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|298674106|ref|YP_003725856.1| - 0.00016 21.7 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|298674106|ref|YP_003725856.1| - 0.0016 18.2 0.0 0.0032 17.3 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|298674106|ref|YP_003725856.1| - 0.061 12.6 0.0 0.065 12.5 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 HAS-barrel PF09378.5 gi|298674106|ref|YP_003725856.1| - 0.1 12.4 0.0 0.16 11.9 0.0 1.5 1 1 0 1 1 1 0 HAS barrel domain Choline_kinase PF01633.15 gi|298674106|ref|YP_003725856.1| - 0.13 11.8 0.0 0.15 11.5 0.0 1.0 1 0 0 1 1 1 0 Choline/ethanolamine kinase dTMP_synthase PF02593.9 gi|298674107|ref|YP_003725857.1| - 2.3e-75 252.6 0.0 2.6e-75 252.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase zf-B_box PF00643.19 gi|298674107|ref|YP_003725857.1| - 0.0051 16.6 1.5 0.0089 15.8 1.0 1.4 1 0 0 1 1 1 1 B-box zinc finger FYVE PF01363.16 gi|298674107|ref|YP_003725857.1| - 0.034 14.0 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 FYVE zinc finger DUF1400 PF07176.6 gi|298674108|ref|YP_003725858.1| - 0.043 13.7 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) Nuc_deoxyrib_tr PF05014.10 gi|298674109|ref|YP_003725859.1| - 3e-31 107.6 0.0 3.8e-31 107.3 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF4406 PF14359.1 gi|298674109|ref|YP_003725859.1| - 0.007 16.4 0.0 0.0092 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4406) Baculo_LEF-10 PF07206.6 gi|298674109|ref|YP_003725859.1| - 0.0088 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Baculovirus late expression factor 10 (LEF-10) Pyr_redox_2 PF07992.9 gi|298674110|ref|YP_003725860.1| - 1.2e-30 106.8 0.4 4.3e-29 101.8 0.3 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|298674110|ref|YP_003725860.1| - 6.1e-21 74.5 0.2 1.4e-20 73.3 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|298674110|ref|YP_003725860.1| - 2.1e-14 53.6 0.0 5.9e-14 52.2 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|298674110|ref|YP_003725860.1| - 1.6e-07 30.6 0.1 0.00095 18.1 0.0 2.7 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|298674110|ref|YP_003725860.1| - 4e-06 27.0 0.0 9.4e-05 22.5 0.0 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|298674110|ref|YP_003725860.1| - 0.013 15.1 0.0 0.049 13.2 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|298674110|ref|YP_003725860.1| - 0.084 12.2 0.1 0.27 10.6 0.0 1.9 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF318 PF03773.8 gi|298674111|ref|YP_003725861.1| - 5.4e-56 189.8 24.8 2.8e-55 187.4 17.2 1.8 1 1 0 1 1 1 1 Predicted permease Docking PF08990.6 gi|298674111|ref|YP_003725861.1| - 0.31 10.3 0.5 0.59 9.4 0.4 1.4 1 0 0 1 1 1 0 Erythronolide synthase docking Hydantoinase_A PF01968.13 gi|298674112|ref|YP_003725862.1| - 3.6e-73 246.2 0.5 5.8e-72 242.2 0.0 2.4 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|298674112|ref|YP_003725862.1| - 3.1e-43 147.3 1.4 2.7e-40 137.7 0.1 2.8 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|298674112|ref|YP_003725862.1| - 0.00082 17.8 0.9 0.22 9.8 0.0 2.3 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|298674112|ref|YP_003725862.1| - 0.0022 17.3 0.3 0.45 9.7 0.1 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|298674112|ref|YP_003725862.1| - 0.014 15.2 1.2 0.79 9.5 0.1 2.6 2 0 0 2 2 2 0 Cell division protein FtsA Sda PF08970.5 gi|298674112|ref|YP_003725862.1| - 0.064 12.7 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Sporulation inhibitor A DegT_DnrJ_EryC1 PF01041.12 gi|298674113|ref|YP_003725863.1| - 1.5e-91 307.1 0.0 1.8e-91 306.8 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|298674113|ref|YP_003725863.1| - 3.4e-08 32.8 0.0 5.3e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|298674113|ref|YP_003725863.1| - 7e-06 25.0 0.0 1.2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|298674113|ref|YP_003725863.1| - 3.3e-05 23.1 0.0 4.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|298674113|ref|YP_003725863.1| - 0.00018 19.9 0.0 0.00028 19.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.14 gi|298674113|ref|YP_003725863.1| - 0.014 13.7 0.0 0.02 13.2 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase SelA PF03841.8 gi|298674113|ref|YP_003725863.1| - 0.092 11.4 0.2 0.21 10.2 0.1 1.6 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Prenyltrans_2 PF13249.1 gi|298674114|ref|YP_003725864.1| - 0.0012 19.2 0.0 0.0073 16.7 0.0 2.5 2 1 0 2 2 2 1 Prenyltransferase-like Pec_lyase PF09492.5 gi|298674114|ref|YP_003725864.1| - 0.0021 17.2 0.1 0.083 12.0 0.0 2.3 1 1 0 2 2 2 1 Pectic acid lyase Glyco_hydro_15 PF00723.16 gi|298674114|ref|YP_003725864.1| - 0.0038 15.8 0.3 0.018 13.6 0.4 2.1 2 1 0 2 2 2 1 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|298674114|ref|YP_003725864.1| - 0.013 15.4 0.0 0.81 9.7 0.0 2.8 1 1 1 2 2 2 0 Prenyltransferase-like Hydrolase_3 PF08282.7 gi|298674116|ref|YP_003725866.1| - 7.9e-17 61.6 0.1 1.8e-16 60.4 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|298674116|ref|YP_003725866.1| - 1.5e-06 27.6 0.0 0.0014 18.0 0.0 2.2 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.1 gi|298674116|ref|YP_003725866.1| - 1.9e-05 24.4 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|298674116|ref|YP_003725866.1| - 0.00011 22.4 4.5 0.01 15.9 3.1 2.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|298674116|ref|YP_003725866.1| - 0.071 13.3 0.1 1.9 8.7 0.0 2.5 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase MS_channel PF00924.13 gi|298674117|ref|YP_003725867.1| - 8.9e-41 139.4 2.2 1.5e-40 138.7 1.5 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3043 PF11241.3 gi|298674117|ref|YP_003725867.1| - 3 7.4 4.5 1 8.9 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) Phage_integrase PF00589.17 gi|298674118|ref|YP_003725868.1| - 1.1e-23 83.8 0.5 3e-23 82.3 0.1 1.9 3 0 0 3 3 3 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|298674118|ref|YP_003725868.1| - 1.8e-07 31.1 0.0 5.2e-07 29.7 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|298674118|ref|YP_003725868.1| - 8.2e-07 28.0 3.0 1.5e-06 27.1 2.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298674118|ref|YP_003725868.1| - 1.2e-06 27.8 2.1 2.4e-06 26.8 1.4 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|298674118|ref|YP_003725868.1| - 9.1e-06 25.4 0.6 2.2e-05 24.1 0.4 1.6 1 0 0 1 1 1 1 Double zinc ribbon Phage_int_SAM_4 PF13495.1 gi|298674118|ref|YP_003725868.1| - 7.5e-05 22.9 0.0 0.00042 20.5 0.0 2.2 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain zf-NADH-PPase PF09297.6 gi|298674118|ref|YP_003725868.1| - 0.0027 17.1 0.7 0.15 11.5 0.1 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-RanBP PF00641.13 gi|298674118|ref|YP_003725868.1| - 0.0044 16.0 2.7 0.0075 15.3 1.9 1.4 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others MobC PF05713.6 gi|298674118|ref|YP_003725868.1| - 0.0048 16.8 0.5 0.015 15.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial mobilisation protein (MobC) UPF0547 PF10571.4 gi|298674118|ref|YP_003725868.1| - 0.0055 16.3 2.0 0.01 15.5 1.4 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.1 gi|298674118|ref|YP_003725868.1| - 0.013 15.1 0.3 2.4 7.9 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal zf-DHHC PF01529.15 gi|298674118|ref|YP_003725868.1| - 0.028 13.7 0.2 0.041 13.2 0.1 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase OrfB_Zn_ribbon PF07282.6 gi|298674118|ref|YP_003725868.1| - 0.11 12.1 0.6 0.39 10.4 0.4 1.9 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PRiA4_ORF3 PF07929.6 gi|298674119|ref|YP_003725869.1| - 0.042 13.2 0.2 0.045 13.1 0.1 1.1 1 0 0 1 1 1 0 Plasmid pRiA4b ORF-3-like protein DUF2361 PF10153.4 gi|298674119|ref|YP_003725869.1| - 0.11 12.6 1.3 0.12 12.6 0.9 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2361) AAA_11 PF13086.1 gi|298674122|ref|YP_003725872.1| - 1.1e-21 77.5 0.1 2.7e-11 43.4 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|298674122|ref|YP_003725872.1| - 1.8e-20 73.1 0.0 4.6e-20 71.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|298674122|ref|YP_003725872.1| - 8.6e-12 45.0 0.0 3e-11 43.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|298674122|ref|YP_003725872.1| - 1.9e-06 27.5 0.0 4e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|298674122|ref|YP_003725872.1| - 4.3e-06 26.1 0.0 0.0038 16.4 0.0 2.5 3 0 0 3 3 3 2 PhoH-like protein DEAD PF00270.24 gi|298674122|ref|YP_003725872.1| - 0.0001 21.8 0.0 0.00023 20.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase UvrD-helicase PF00580.16 gi|298674122|ref|YP_003725872.1| - 0.00019 20.8 0.1 0.0014 18.0 0.0 2.3 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain Helicase_RecD PF05127.9 gi|298674122|ref|YP_003725872.1| - 0.00019 21.0 0.0 0.0012 18.5 0.0 2.4 3 0 0 3 3 2 1 Helicase AAA_25 PF13481.1 gi|298674122|ref|YP_003725872.1| - 0.00039 19.8 0.1 0.0014 18.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|298674122|ref|YP_003725872.1| - 0.00088 18.8 0.4 0.79 9.1 0.0 4.1 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase UvrD_C_2 PF13538.1 gi|298674122|ref|YP_003725872.1| - 0.0046 17.0 0.0 0.017 15.2 0.0 2.0 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA PF00004.24 gi|298674122|ref|YP_003725872.1| - 0.0059 16.8 0.0 0.029 14.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298674122|ref|YP_003725872.1| - 0.0075 16.4 0.0 0.032 14.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|298674122|ref|YP_003725872.1| - 0.0077 15.2 0.0 0.2 10.5 0.0 2.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|298674122|ref|YP_003725872.1| - 0.008 15.8 0.3 0.11 12.2 0.0 2.7 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|298674122|ref|YP_003725872.1| - 0.013 15.1 0.0 0.13 11.9 0.0 2.6 3 0 0 3 3 3 0 NACHT domain T2SE PF00437.15 gi|298674122|ref|YP_003725872.1| - 0.061 12.2 0.0 1.1 8.0 0.0 2.6 2 1 0 2 2 2 0 Type II/IV secretion system protein PIF1 PF05970.9 gi|298674122|ref|YP_003725872.1| - 0.12 11.3 0.7 1.5 7.6 0.2 2.6 2 1 0 2 2 2 0 PIF1-like helicase DUF507 PF04368.8 gi|298674123|ref|YP_003725873.1| - 0.017 14.7 1.4 0.038 13.6 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF507) Tnp_zf-ribbon_2 PF13842.1 gi|298674123|ref|YP_003725873.1| - 0.19 12.1 3.8 0.39 11.1 2.6 1.5 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon AAA PF00004.24 gi|298674124|ref|YP_003725874.1| - 9.5e-21 74.3 0.0 1.7e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|298674124|ref|YP_003725874.1| - 8.2e-06 25.5 0.0 1.7e-05 24.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|298674124|ref|YP_003725874.1| - 1.9e-05 24.4 0.3 0.0024 17.6 0.2 2.2 1 1 0 1 1 1 1 Archaeal ATPase AAA_11 PF13086.1 gi|298674124|ref|YP_003725874.1| - 6.1e-05 22.6 0.0 8.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|298674124|ref|YP_003725874.1| - 0.00014 21.8 0.0 0.00023 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|298674124|ref|YP_003725874.1| - 0.00026 19.9 0.0 0.0019 17.1 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.1 gi|298674124|ref|YP_003725874.1| - 0.00037 20.5 0.0 0.0034 17.4 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|298674124|ref|YP_003725874.1| - 0.00043 19.9 0.0 0.001 18.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|298674124|ref|YP_003725874.1| - 0.00044 20.3 0.0 0.0014 18.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298674124|ref|YP_003725874.1| - 0.00098 19.4 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|298674124|ref|YP_003725874.1| - 0.0012 19.6 0.0 0.0024 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|298674124|ref|YP_003725874.1| - 0.0023 17.6 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 NTPase Rad17 PF03215.10 gi|298674124|ref|YP_003725874.1| - 0.0082 14.8 0.0 0.73 8.4 0.0 2.1 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_2 PF07724.9 gi|298674124|ref|YP_003725874.1| - 0.0092 15.9 0.0 0.078 12.8 0.0 2.3 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|298674124|ref|YP_003725874.1| - 0.015 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|298674124|ref|YP_003725874.1| - 0.025 14.7 0.0 0.1 12.8 0.0 2.0 2 1 0 2 2 2 0 RNA helicase RuvB_N PF05496.7 gi|298674124|ref|YP_003725874.1| - 0.028 13.4 0.0 0.046 12.7 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|298674124|ref|YP_003725874.1| - 0.028 13.5 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.1 gi|298674124|ref|YP_003725874.1| - 0.029 14.3 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|298674124|ref|YP_003725874.1| - 0.046 14.0 0.0 0.082 13.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|298674124|ref|YP_003725874.1| - 0.063 12.8 0.0 0.092 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|298674124|ref|YP_003725874.1| - 0.12 11.9 0.1 0.6 9.7 0.0 2.0 1 1 0 1 1 1 0 NACHT domain Trans_reg_C PF00486.23 gi|298674125|ref|YP_003725875.1| - 0.017 15.0 0.0 8.3 6.4 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulatory protein, C terminal SRP9-21 PF05486.7 gi|298674125|ref|YP_003725875.1| - 0.018 14.7 1.8 2.9 7.6 0.0 2.8 3 0 0 3 3 3 0 Signal recognition particle 9 kDa protein (SRP9) Ebp2 PF05890.7 gi|298674125|ref|YP_003725875.1| - 0.065 12.5 0.1 2.4 7.4 0.0 2.1 2 0 0 2 2 2 0 Eukaryotic rRNA processing protein EBP2 Pneumo_M2 PF07380.6 gi|298674125|ref|YP_003725875.1| - 0.085 12.8 1.3 0.15 12.0 0.1 2.0 2 0 0 2 2 2 0 Pneumovirus M2 protein Rhabdo_ncap_2 PF03216.8 gi|298674125|ref|YP_003725875.1| - 0.12 11.1 0.6 0.72 8.5 0.1 2.0 2 0 0 2 2 2 0 Rhabdovirus nucleoprotein Erf4 PF10256.4 gi|298674125|ref|YP_003725875.1| - 0.38 10.6 3.5 0.92 9.3 0.0 2.4 2 1 0 2 2 2 0 Golgin subfamily A member 7/ERF4 family Reo_sigmaC PF04582.7 gi|298674126|ref|YP_003725876.1| - 5.2e-05 22.5 17.1 0.012 14.7 3.6 2.7 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Filament PF00038.16 gi|298674126|ref|YP_003725876.1| - 7.6e-05 22.3 58.4 0.00034 20.1 11.1 4.1 1 1 3 4 4 4 2 Intermediate filament protein DUF869 PF05911.6 gi|298674126|ref|YP_003725876.1| - 0.00022 19.6 48.2 0.00035 18.9 33.4 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) AAA_27 PF13514.1 gi|298674126|ref|YP_003725876.1| - 0.00031 18.5 36.5 0.11 10.1 0.0 3.1 2 1 1 3 3 3 2 AAA domain TMF_TATA_bd PF12325.3 gi|298674126|ref|YP_003725876.1| - 0.00061 19.5 19.4 0.00061 19.5 13.5 3.8 2 2 2 4 4 4 1 TATA element modulatory factor 1 TATA binding AAA_13 PF13166.1 gi|298674126|ref|YP_003725876.1| - 0.00066 18.2 75.2 0.0021 16.5 23.7 2.9 3 1 1 4 4 4 3 AAA domain WEMBL PF05701.6 gi|298674126|ref|YP_003725876.1| - 0.0011 17.5 53.7 0.0016 17.0 36.5 1.6 1 1 1 2 2 2 1 Weak chloroplast movement under blue light BRE1 PF08647.6 gi|298674126|ref|YP_003725876.1| - 0.0044 16.9 21.3 0.0044 16.9 14.8 4.9 2 2 3 5 5 4 1 BRE1 E3 ubiquitin ligase AAA_23 PF13476.1 gi|298674126|ref|YP_003725876.1| - 0.0072 16.6 31.6 0.0072 16.6 21.9 4.5 1 1 3 4 4 2 1 AAA domain Laminin_II PF06009.7 gi|298674126|ref|YP_003725876.1| - 0.016 14.9 50.8 0.032 13.9 6.2 4.2 1 1 3 4 4 4 0 Laminin Domain II AAA_29 PF13555.1 gi|298674126|ref|YP_003725876.1| - 0.024 14.1 0.1 0.052 13.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APG6 PF04111.7 gi|298674126|ref|YP_003725876.1| - 0.036 13.1 63.1 0.013 14.6 16.2 3.3 1 1 2 3 3 3 0 Autophagy protein Apg6 IncA PF04156.9 gi|298674126|ref|YP_003725876.1| - 0.085 12.4 57.5 9.7 5.7 19.6 4.4 1 1 3 4 4 4 0 IncA protein CENP-F_leu_zip PF10473.4 gi|298674126|ref|YP_003725876.1| - 0.096 12.5 65.6 0.013 15.3 19.3 3.4 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|298674126|ref|YP_003725876.1| - 0.22 9.1 66.5 0.64 7.6 46.1 1.7 1 1 0 1 1 1 0 Myosin tail SlyX PF04102.7 gi|298674126|ref|YP_003725876.1| - 0.45 10.9 27.7 0.18 12.1 1.9 5.6 4 2 1 5 5 5 0 SlyX TBPIP PF07106.8 gi|298674126|ref|YP_003725876.1| - 0.48 9.9 68.5 0.81 9.2 9.8 4.5 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Transglut_core2 PF13369.1 gi|298674126|ref|YP_003725876.1| - 0.79 9.2 2.7 10 5.5 0.0 2.9 3 0 0 3 3 3 0 Transglutaminase-like superfamily DUF2265 PF10023.4 gi|298674126|ref|YP_003725876.1| - 0.96 8.5 23.2 0.038 13.1 3.1 3.0 3 1 1 4 4 4 0 Predicted aminopeptidase (DUF2265) Spc7 PF08317.6 gi|298674126|ref|YP_003725876.1| - 1.1 7.8 67.2 1.8 7.1 17.7 3.3 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF3450 PF11932.3 gi|298674126|ref|YP_003725876.1| - 1.7 7.8 39.9 0.13 11.5 3.1 4.3 2 2 1 4 4 4 0 Protein of unknown function (DUF3450) zf-C4H2 PF10146.4 gi|298674126|ref|YP_003725876.1| - 1.7 8.5 63.2 0.16 11.9 16.6 3.3 1 1 2 3 3 3 0 Zinc finger-containing protein Mitofilin PF09731.4 gi|298674126|ref|YP_003725876.1| - 1.9 7.0 48.3 0.057 12.0 15.4 2.4 2 0 0 2 2 2 0 Mitochondrial inner membrane protein DUF948 PF06103.6 gi|298674126|ref|YP_003725876.1| - 5.8 6.8 32.2 1.8 8.5 2.3 4.9 3 1 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.9 gi|298674126|ref|YP_003725876.1| - 6.9 5.8 51.3 0.033 13.5 6.5 4.3 1 1 2 4 4 4 0 Laminin Domain I Spc24 PF08286.6 gi|298674126|ref|YP_003725876.1| - 9.1 6.0 66.9 0.88 9.2 4.7 5.6 2 1 3 5 5 5 0 Spc24 subunit of Ndc80 PAPS_reduct PF01507.14 gi|298674128|ref|YP_003725878.1| - 1.9e-39 135.2 0.4 3.2e-38 131.2 0.0 2.5 2 1 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.22 gi|298674128|ref|YP_003725878.1| - 4.6e-06 25.9 11.8 0.00094 18.6 2.8 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674128|ref|YP_003725878.1| - 2.1e-05 24.1 8.9 0.044 13.6 0.2 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298674128|ref|YP_003725878.1| - 3.8e-05 23.9 9.0 5.7e-05 23.4 5.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674128|ref|YP_003725878.1| - 0.001 19.2 19.1 0.0061 16.7 5.9 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298674128|ref|YP_003725878.1| - 0.0019 18.0 10.3 0.0083 15.9 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674128|ref|YP_003725878.1| - 0.0052 17.1 5.7 0.0052 17.1 3.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674128|ref|YP_003725878.1| - 0.0085 15.9 15.0 0.12 12.3 4.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298674128|ref|YP_003725878.1| - 0.013 15.5 11.1 0.041 13.9 7.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674128|ref|YP_003725878.1| - 0.017 15.8 0.3 0.017 15.8 0.2 3.3 4 0 0 4 4 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|298674128|ref|YP_003725878.1| - 0.085 13.4 9.9 1.9 9.0 0.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|298674128|ref|YP_003725878.1| - 0.34 10.7 19.1 0.24 11.2 10.1 2.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674128|ref|YP_003725878.1| - 0.86 9.9 14.4 0.18 12.1 2.7 2.8 1 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298674128|ref|YP_003725878.1| - 4.9 7.6 10.8 4.5 7.7 2.1 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain tRNA_lig_kinase PF08303.6 gi|298674132|ref|YP_003725882.1| - 0.16 11.8 0.1 0.16 11.8 0.1 2.3 3 0 0 3 3 3 0 tRNA ligase kinase domain DUF1880 PF08976.6 gi|298674133|ref|YP_003725883.1| - 0.019 15.1 0.0 0.021 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) Mrr_cat PF04471.7 gi|298674134|ref|YP_003725884.1| - 1.3e-20 73.3 0.6 3.4e-20 71.9 0.3 1.8 2 0 0 2 2 2 1 Restriction endonuclease DDE_3 PF13358.1 gi|298674135|ref|YP_003725885.1| - 1e-23 83.6 0.1 1.4e-23 83.2 0.1 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF387 PF04079.11 gi|298674135|ref|YP_003725885.1| - 0.051 12.9 0.0 0.084 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) rve PF00665.21 gi|298674135|ref|YP_003725885.1| - 0.096 12.7 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain HTH_29 PF13551.1 gi|298674136|ref|YP_003725886.1| - 1.7e-21 76.4 0.0 4e-21 75.2 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|298674136|ref|YP_003725886.1| - 4.7e-07 30.5 0.0 1.2e-06 29.1 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|298674136|ref|YP_003725886.1| - 6.6e-05 22.4 0.0 0.00024 20.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain DUF4284 PF14112.1 gi|298674136|ref|YP_003725886.1| - 0.0048 17.3 1.1 3 8.3 0.2 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4284) Clathrin PF00637.15 gi|298674136|ref|YP_003725886.1| - 0.031 13.8 0.3 0.066 12.8 0.2 1.6 1 0 0 1 1 1 0 Region in Clathrin and VPS DUF4073 PF13285.1 gi|298674137|ref|YP_003725887.1| - 0.051 13.0 0.6 0.084 12.2 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4073) Tagatose_6_P_K PF08013.6 gi|298674138|ref|YP_003725888.1| - 0.021 13.2 0.3 0.024 13.0 0.2 1.2 1 0 0 1 1 1 0 Tagatose 6 phosphate kinase ERp29 PF07749.7 gi|298674138|ref|YP_003725888.1| - 0.13 12.9 2.9 0.22 12.1 0.3 2.4 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain DUF2040 PF09745.4 gi|298674138|ref|YP_003725888.1| - 0.73 9.6 5.4 0.15 11.8 1.5 1.6 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 55 (DUF2040) N6_Mtase PF02384.11 gi|298674140|ref|YP_003725890.1| - 4.7e-33 114.5 0.0 1e-32 113.4 0.0 1.5 1 1 0 1 1 1 1 N-6 DNA Methylase HSDR_N_2 PF13588.1 gi|298674140|ref|YP_003725890.1| - 1.1e-31 108.9 0.2 3e-31 107.4 0.0 1.9 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) Methyltransf_26 PF13659.1 gi|298674140|ref|YP_003725890.1| - 1.7e-08 34.4 0.0 3.1e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|298674140|ref|YP_003725890.1| - 0.013 15.0 0.0 0.2 11.2 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Eco57I PF07669.6 gi|298674140|ref|YP_003725890.1| - 0.017 15.4 0.0 0.056 13.8 0.0 1.9 1 0 0 1 1 1 0 Eco57I restriction-modification methylase MTS PF05175.9 gi|298674140|ref|YP_003725890.1| - 0.11 11.8 0.0 0.47 9.8 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase small domain DDE_Tnp_1 PF01609.16 gi|298674142|ref|YP_003725892.1| - 6.6e-17 61.7 2.4 9.8e-17 61.1 1.7 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|298674142|ref|YP_003725892.1| - 0.00061 19.6 0.4 0.0024 17.7 0.3 2.1 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_4 PF13359.1 gi|298674142|ref|YP_003725892.1| - 0.0019 17.8 0.4 0.0031 17.1 0.3 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF1193 PF06702.7 gi|298674142|ref|YP_003725892.1| - 0.05 13.0 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1193) GATase_4 PF13230.1 gi|298674145|ref|YP_003725895.1| - 7.4e-75 251.1 0.1 8.8e-75 250.8 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|298674145|ref|YP_003725895.1| - 1.9e-08 33.4 0.1 1.8e-07 30.1 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|298674145|ref|YP_003725895.1| - 8.9e-06 25.6 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|298674146|ref|YP_003725896.1| - 1.1e-77 260.4 0.0 1.5e-77 259.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|298674146|ref|YP_003725896.1| - 1.5e-10 40.3 0.1 3.7e-09 35.7 0.1 2.3 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|298674146|ref|YP_003725896.1| - 2.8e-09 37.0 0.0 4.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Hydrolase_3 PF08282.7 gi|298674146|ref|YP_003725896.1| - 1.8 8.0 5.3 0.58 9.6 0.8 2.1 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase zf-SNAP50_C PF12251.3 gi|298674147|ref|YP_003725897.1| - 0.11 11.8 1.1 0.16 11.3 0.8 1.3 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal N6_Mtase PF02384.11 gi|298674148|ref|YP_003725898.1| - 3.2e-54 184.1 0.0 4.5e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|298674148|ref|YP_003725898.1| - 8.5e-09 35.9 0.7 8.5e-09 35.9 0.5 2.9 3 2 0 3 3 3 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|298674148|ref|YP_003725898.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methylase_S PF01420.14 gi|298674149|ref|YP_003725899.1| - 0.00024 21.1 4.5 0.00032 20.7 3.1 1.3 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain HXXSHH PF07586.6 gi|298674149|ref|YP_003725899.1| - 0.094 11.6 0.1 0.71 8.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) PP2C_2 PF13672.1 gi|298674150|ref|YP_003725900.1| - 2.2e-14 53.3 0.0 3.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|298674150|ref|YP_003725900.1| - 6.9e-14 51.8 0.3 3.9e-08 33.0 0.1 2.0 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.7 gi|298674150|ref|YP_003725900.1| - 2.6e-07 30.5 0.1 5.9e-07 29.3 0.1 1.6 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DUF4295 PF14128.1 gi|298674150|ref|YP_003725900.1| - 0.014 14.9 0.3 0.1 12.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) DEAD PF00270.24 gi|298674154|ref|YP_003725904.1| - 1.5e-29 102.6 0.0 1.2e-28 99.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|298674154|ref|YP_003725904.1| - 2.6e-09 36.8 0.0 6.5e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|298674154|ref|YP_003725904.1| - 2.4e-08 34.0 0.0 1.5e-07 31.4 0.0 2.3 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|298674154|ref|YP_003725904.1| - 1.8e-05 24.7 0.2 0.00018 21.6 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain Sec63 PF02889.11 gi|298674154|ref|YP_003725904.1| - 2.5e-05 23.6 0.1 4e-05 23.0 0.1 1.2 1 0 0 1 1 1 1 Sec63 Brl domain DNA_pol_lambd_f PF10391.4 gi|298674154|ref|YP_003725904.1| - 0.00021 20.7 0.5 0.0014 18.0 0.0 2.6 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|298674154|ref|YP_003725904.1| - 0.035 14.0 0.0 0.11 12.3 0.0 1.9 1 0 0 1 1 1 0 Pathogenicity locus DUF4332 PF14229.1 gi|298674154|ref|YP_003725904.1| - 0.065 13.2 0.1 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Histidinol_dh PF00815.15 gi|298674155|ref|YP_003725905.1| - 7.1e-164 545.3 4.5 8.4e-164 545.0 3.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF1699 PF08004.6 gi|298674156|ref|YP_003725906.1| - 9.3e-65 216.0 1.5 1.1e-64 215.8 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HTH_38 PF13936.1 gi|298674156|ref|YP_003725906.1| - 0.08 12.5 0.1 0.17 11.4 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Glyco_hydro_2_N PF02837.13 gi|298674157|ref|YP_003725907.1| - 0.016 14.7 0.0 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolases family 2, sugar binding domain PALP PF00291.20 gi|298674158|ref|YP_003725908.1| - 2.3e-36 125.5 0.0 2.9e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Phos_pyr_kin PF08543.7 gi|298674159|ref|YP_003725909.1| - 2.5e-85 285.5 0.5 3.8e-85 285.0 0.3 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|298674159|ref|YP_003725909.1| - 7.6e-65 217.4 0.1 1.2e-64 216.7 0.1 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|298674159|ref|YP_003725909.1| - 3.7e-10 39.4 0.2 7.7e-10 38.3 0.0 1.5 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|298674159|ref|YP_003725909.1| - 0.0027 17.0 0.1 0.004 16.4 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase LAM_C PF12544.3 gi|298674159|ref|YP_003725909.1| - 0.025 14.6 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 Lysine-2,3-aminomutase LSM PF01423.17 gi|298674160|ref|YP_003725910.1| - 2.8e-22 78.0 0.4 3.1e-22 77.8 0.3 1.0 1 0 0 1 1 1 1 LSM domain Ribosomal_L37e PF01907.14 gi|298674161|ref|YP_003725911.1| - 1.1e-23 82.7 12.4 1.1e-23 82.6 8.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|298674161|ref|YP_003725911.1| - 0.0086 15.8 1.5 0.0093 15.7 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS91 PF14319.1 gi|298674161|ref|YP_003725911.1| - 0.068 12.6 2.1 0.066 12.7 1.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain GCC2_GCC3 PF07699.8 gi|298674161|ref|YP_003725911.1| - 0.075 12.6 3.4 0.13 11.8 2.4 1.5 1 1 0 1 1 1 0 GCC2 and GCC3 HypA PF01155.14 gi|298674161|ref|YP_003725911.1| - 0.16 11.6 1.4 0.17 11.5 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|298674161|ref|YP_003725911.1| - 0.2 10.9 3.8 0.42 9.8 2.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|298674161|ref|YP_003725911.1| - 0.25 11.3 5.2 1.7 8.6 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.1 gi|298674161|ref|YP_003725911.1| - 0.88 9.1 7.7 0.66 9.5 0.8 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.6 gi|298674161|ref|YP_003725911.1| - 2 8.1 5.8 2.8 7.6 4.0 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Tnp_zf-ribbon_2 PF13842.1 gi|298674161|ref|YP_003725911.1| - 2.2 8.7 6.6 6.9 7.1 0.4 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon RNA_POL_M_15KD PF02150.11 gi|298674161|ref|YP_003725911.1| - 2.6 7.8 5.2 8.5 6.1 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit FYVE PF01363.16 gi|298674161|ref|YP_003725911.1| - 3 7.7 8.3 5.1 7.0 5.7 1.5 1 1 0 1 1 1 0 FYVE zinc finger YhfH PF14149.1 gi|298674161|ref|YP_003725911.1| - 7.6 6.4 8.0 3.6 7.4 0.8 2.2 1 1 1 2 2 2 0 YhfH-like protein DNA_RNApol_7kD PF03604.8 gi|298674161|ref|YP_003725911.1| - 8.3 5.9 8.0 18 4.9 1.0 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GATase_6 PF13522.1 gi|298674162|ref|YP_003725912.1| - 2.1e-24 85.9 0.0 6.8e-24 84.3 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|298674162|ref|YP_003725912.1| - 3.7e-24 84.8 0.0 7.1e-24 83.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|298674162|ref|YP_003725912.1| - 4.4e-22 78.2 0.0 1.5e-16 60.0 0.0 3.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|298674162|ref|YP_003725912.1| - 3.3e-09 36.5 0.4 6.8e-09 35.5 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|298674162|ref|YP_003725912.1| - 1.1e-08 34.1 0.0 2.7e-08 32.8 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II OrfB_IS605 PF01385.14 gi|298674163|ref|YP_003725913.1| - 2.3e-44 151.5 6.2 2.3e-44 151.5 4.3 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674163|ref|YP_003725913.1| - 3.4e-24 84.2 0.3 6.8e-24 83.3 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298674163|ref|YP_003725913.1| - 1.2e-20 72.5 1.7 2.8e-20 71.3 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_GP20 PF06810.6 gi|298674163|ref|YP_003725913.1| - 0.067 12.6 7.0 0.028 13.8 1.1 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 HypA PF01155.14 gi|298674163|ref|YP_003725913.1| - 0.1 12.3 0.1 0.3 10.7 0.1 1.8 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family M_domain PF12938.2 gi|298674163|ref|YP_003725913.1| - 1.7 8.3 6.8 0.42 10.3 1.6 1.9 2 0 0 2 2 2 0 M domain of GW182 Rubredoxin PF00301.15 gi|298674163|ref|YP_003725913.1| - 4.5 7.2 8.6 54 3.7 6.0 2.5 1 1 0 1 1 1 0 Rubredoxin Thi4 PF01946.12 gi|298674164|ref|YP_003725914.1| - 1.3e-84 282.8 2.0 1.6e-84 282.6 1.4 1.0 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|298674164|ref|YP_003725914.1| - 1.4e-12 47.4 0.2 1.9e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|298674164|ref|YP_003725914.1| - 2.5e-06 27.5 0.1 3.1e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|298674164|ref|YP_003725914.1| - 3.8e-06 25.9 3.3 0.00013 21.0 0.5 2.1 1 1 1 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|298674164|ref|YP_003725914.1| - 4.3e-06 26.6 0.1 9.9e-06 25.4 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|298674164|ref|YP_003725914.1| - 5.1e-05 21.9 1.5 8.5e-05 21.1 1.0 1.3 1 0 0 1 1 1 1 HI0933-like protein DAO PF01266.19 gi|298674164|ref|YP_003725914.1| - 0.00016 20.6 1.3 0.0061 15.5 0.1 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|298674164|ref|YP_003725914.1| - 0.00043 19.2 0.8 0.0088 15.0 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|298674164|ref|YP_003725914.1| - 0.0045 15.9 0.3 0.0091 14.8 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|298674164|ref|YP_003725914.1| - 0.0063 16.5 0.1 0.0083 16.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|298674164|ref|YP_003725914.1| - 0.0068 15.4 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|298674164|ref|YP_003725914.1| - 0.084 12.6 0.2 0.2 11.4 0.1 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding AAA PF00004.24 gi|298674165|ref|YP_003725915.1| - 3.3e-38 130.8 0.0 5.7e-38 130.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|298674165|ref|YP_003725915.1| - 3e-09 37.0 0.4 2e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|298674165|ref|YP_003725915.1| - 5.1e-08 32.2 0.0 3.9e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|298674165|ref|YP_003725915.1| - 1.4e-07 30.7 0.0 1.7e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|298674165|ref|YP_003725915.1| - 2.8e-07 29.5 0.0 7.1e-07 28.2 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus AAA_17 PF13207.1 gi|298674165|ref|YP_003725915.1| - 3e-07 31.2 3.0 8.9e-07 29.7 0.2 2.6 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|298674165|ref|YP_003725915.1| - 4.3e-06 26.9 0.6 0.00025 21.1 0.4 2.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|298674165|ref|YP_003725915.1| - 4.2e-05 23.4 0.0 8.9e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|298674165|ref|YP_003725915.1| - 6.6e-05 22.9 0.0 0.00054 19.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|298674165|ref|YP_003725915.1| - 0.00029 20.5 0.1 0.0014 18.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|298674165|ref|YP_003725915.1| - 0.00056 19.3 0.0 0.00086 18.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.1 gi|298674165|ref|YP_003725915.1| - 0.00078 19.4 0.2 0.012 15.5 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|298674165|ref|YP_003725915.1| - 0.00087 19.5 1.0 0.0036 17.5 0.0 2.5 2 2 1 3 3 3 1 AAA domain Bac_DnaA PF00308.13 gi|298674165|ref|YP_003725915.1| - 0.0022 17.6 0.2 0.0044 16.7 0.1 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein Mg_chelatase PF01078.16 gi|298674165|ref|YP_003725915.1| - 0.0024 17.0 0.1 0.0051 15.9 0.0 1.5 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|298674165|ref|YP_003725915.1| - 0.0034 16.9 0.1 0.0073 15.9 0.1 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|298674165|ref|YP_003725915.1| - 0.0048 17.0 0.1 0.015 15.4 0.0 2.0 2 0 0 2 2 1 1 RNA helicase AAA_14 PF13173.1 gi|298674165|ref|YP_003725915.1| - 0.0066 16.3 0.0 0.016 15.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|298674165|ref|YP_003725915.1| - 0.0077 15.6 1.8 0.17 11.2 1.2 2.2 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|298674165|ref|YP_003725915.1| - 0.02 14.5 0.0 0.049 13.2 0.0 1.6 2 0 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|298674165|ref|YP_003725915.1| - 0.032 13.1 0.0 0.057 12.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Torsin PF06309.6 gi|298674165|ref|YP_003725915.1| - 0.043 13.6 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Torsin UPF0079 PF02367.12 gi|298674165|ref|YP_003725915.1| - 0.046 13.3 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IPT PF01745.11 gi|298674165|ref|YP_003725915.1| - 0.048 12.8 0.0 0.096 11.8 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase Sigma54_activat PF00158.21 gi|298674165|ref|YP_003725915.1| - 0.067 12.6 0.0 0.17 11.3 0.0 1.7 1 1 1 2 2 2 0 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|298674165|ref|YP_003725915.1| - 0.088 11.6 0.1 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.7 gi|298674165|ref|YP_003725915.1| - 0.099 11.7 0.0 0.23 10.5 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin Lactamase_B_2 PF12706.2 gi|298674167|ref|YP_003725917.1| - 3.7e-29 101.6 0.0 4.7e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298674167|ref|YP_003725917.1| - 5.4e-14 52.3 0.0 2.1e-12 47.1 0.0 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|298674167|ref|YP_003725917.1| - 0.00012 21.4 0.0 0.00023 20.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease DSPc PF00782.15 gi|298674168|ref|YP_003725918.1| - 0.08 12.5 0.0 0.095 12.2 0.0 1.2 1 0 0 1 1 1 0 Dual specificity phosphatase, catalytic domain Ribosomal_S8e PF01201.17 gi|298674169|ref|YP_003725919.1| - 1.2e-36 125.7 5.3 1.3e-36 125.6 3.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e AsnC_trans_reg PF01037.16 gi|298674170|ref|YP_003725920.1| - 1.9e-15 56.2 0.9 2.9e-15 55.7 0.1 1.7 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|298674170|ref|YP_003725920.1| - 1.1e-11 43.8 0.0 3.3e-11 42.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|298674170|ref|YP_003725920.1| - 9e-07 28.3 0.6 1.6e-06 27.5 0.4 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_AsnC-type PF13404.1 gi|298674170|ref|YP_003725920.1| - 2.5e-06 26.9 0.0 9e-06 25.1 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|298674170|ref|YP_003725920.1| - 4.8e-05 22.9 0.0 0.00033 20.2 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|298674170|ref|YP_003725920.1| - 0.00017 21.2 0.1 0.00055 19.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|298674170|ref|YP_003725920.1| - 0.001 18.6 0.0 0.0037 16.8 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|298674170|ref|YP_003725920.1| - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|298674170|ref|YP_003725920.1| - 0.0083 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|298674170|ref|YP_003725920.1| - 0.0086 15.6 0.1 0.018 14.6 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.1 gi|298674170|ref|YP_003725920.1| - 0.021 14.5 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rio2_N PF09202.6 gi|298674170|ref|YP_003725920.1| - 0.038 14.0 0.0 0.35 10.9 0.0 2.2 2 0 0 2 2 2 0 Rio2, N-terminal HTH_20 PF12840.2 gi|298674170|ref|YP_003725920.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|298674170|ref|YP_003725920.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|298674170|ref|YP_003725920.1| - 0.062 13.4 0.0 0.31 11.1 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator Utp13 PF08625.6 gi|298674170|ref|YP_003725920.1| - 0.065 12.8 0.1 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 Utp13 specific WD40 associated domain Aminotran_1_2 PF00155.16 gi|298674171|ref|YP_003725921.1| - 5.6e-68 229.5 0.0 6.3e-68 229.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|298674171|ref|YP_003725921.1| - 3.8e-14 52.4 0.2 5.6e-14 51.9 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|298674171|ref|YP_003725921.1| - 1.6e-08 33.7 0.1 2.4e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|298674171|ref|YP_003725921.1| - 9.8e-08 31.4 0.0 1.4e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|298674171|ref|YP_003725921.1| - 8.4e-07 27.6 0.4 1.4e-06 26.8 0.3 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|298674171|ref|YP_003725921.1| - 0.0012 17.5 0.1 0.0019 16.7 0.1 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain TrmB PF01978.14 gi|298674172|ref|YP_003725922.1| - 1.2e-17 63.3 0.2 1.9e-17 62.7 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.12 gi|298674172|ref|YP_003725922.1| - 0.0074 15.7 0.2 0.0091 15.4 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.5 gi|298674172|ref|YP_003725922.1| - 0.0094 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|298674172|ref|YP_003725922.1| - 0.029 14.1 0.1 0.045 13.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|298674172|ref|YP_003725922.1| - 0.052 13.2 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|298674172|ref|YP_003725922.1| - 0.078 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|298674172|ref|YP_003725922.1| - 0.093 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain MAP1B_neuraxin PF00414.12 gi|298674172|ref|YP_003725922.1| - 0.14 11.5 2.2 0.27 10.6 1.5 1.4 1 0 0 1 1 1 0 Neuraxin and MAP1B repeat KaiC PF06745.8 gi|298674174|ref|YP_003725924.1| - 1.1e-49 168.5 1.6 1.3e-49 168.3 1.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|298674174|ref|YP_003725924.1| - 3.9e-08 32.0 0.2 4.8e-08 31.7 0.2 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|298674174|ref|YP_003725924.1| - 1.2e-07 31.3 0.0 1.6e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|298674174|ref|YP_003725924.1| - 0.0019 17.2 0.3 0.0025 16.8 0.2 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|298674174|ref|YP_003725924.1| - 0.0039 16.1 0.0 0.0062 15.4 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA PF00004.24 gi|298674174|ref|YP_003725924.1| - 0.0071 16.5 1.2 0.025 14.7 0.8 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298674174|ref|YP_003725924.1| - 0.047 13.8 0.1 0.093 12.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain NTP_transf_3 PF12804.2 gi|298674175|ref|YP_003725925.1| - 2.3e-16 60.2 0.0 2.9e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|298674175|ref|YP_003725925.1| - 2.4e-08 33.7 0.0 3.4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|298674175|ref|YP_003725925.1| - 6.8e-06 25.8 0.0 1.3e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|298674175|ref|YP_003725925.1| - 0.00015 21.1 0.0 0.00026 20.3 0.0 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.11 gi|298674175|ref|YP_003725925.1| - 0.013 14.4 0.5 0.027 13.4 0.1 1.6 2 0 0 2 2 2 0 Guanylyl transferase CofC like CobS PF02654.10 gi|298674176|ref|YP_003725926.1| - 2e-48 165.0 17.2 1.4e-47 162.3 11.9 1.8 1 1 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF1469 PF07332.6 gi|298674176|ref|YP_003725926.1| - 0.012 15.2 0.6 0.012 15.2 0.4 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) FA_desaturase PF00487.19 gi|298674176|ref|YP_003725926.1| - 7.7 5.8 10.5 0.79 9.1 0.4 2.3 2 1 0 2 2 2 0 Fatty acid desaturase PgpA PF04608.8 gi|298674177|ref|YP_003725927.1| - 9.2e-09 35.2 0.0 1.1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A CobD_Cbib PF03186.8 gi|298674178|ref|YP_003725928.1| - 2.8e-92 308.9 0.0 3.4e-92 308.6 0.0 1.0 1 0 0 1 1 1 1 CobD/Cbib protein Aminotran_1_2 PF00155.16 gi|298674179|ref|YP_003725929.1| - 8.4e-47 159.8 0.0 1.1e-46 159.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|298674179|ref|YP_003725929.1| - 5.4e-30 102.9 6.0 1.3e-29 101.6 4.2 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_5 PF00266.14 gi|298674179|ref|YP_003725929.1| - 0.0079 14.9 0.0 0.14 10.8 0.0 2.4 3 0 0 3 3 3 1 Aminotransferase class-V tRNA-synt_His PF13393.1 gi|298674180|ref|YP_003725930.1| - 2.1e-66 224.1 0.0 2.6e-66 223.8 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|298674180|ref|YP_003725930.1| - 3.2e-26 91.9 0.0 5.4e-26 91.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|298674180|ref|YP_003725930.1| - 1.6e-11 43.9 0.1 3.1e-11 43.0 0.1 1.4 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2 PF00152.15 gi|298674180|ref|YP_003725930.1| - 7.2e-06 25.0 2.1 0.086 11.6 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.15 gi|298674180|ref|YP_003725930.1| - 0.003 16.7 0.0 0.026 13.7 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetases class II core domain (F) Ribosomal_S13_N PF08069.7 gi|298674181|ref|YP_003725931.1| - 1.7e-26 91.7 1.1 5.5e-26 90.1 0.4 2.0 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|298674181|ref|YP_003725931.1| - 3.2e-20 71.6 0.6 4.6e-20 71.1 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DHH PF01368.15 gi|298674182|ref|YP_003725932.1| - 1.1e-14 54.3 0.7 2.2e-14 53.3 0.5 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|298674182|ref|YP_003725932.1| - 9.4e-13 47.6 0.6 3.8e-12 45.7 0.4 2.2 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2b PF00587.20 gi|298674184|ref|YP_003725934.1| - 1.7e-12 47.2 0.0 2.7e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Ribosomal_S3Ae PF01015.13 gi|298674185|ref|YP_003725935.1| - 4.4e-68 228.4 7.8 4.9e-68 228.3 5.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Myosin_N PF02736.14 gi|298674185|ref|YP_003725935.1| - 0.54 9.9 4.4 0.22 11.2 0.5 2.1 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Zn_Tnp_IS1595 PF12760.2 gi|298674186|ref|YP_003725936.1| - 0.00058 19.6 2.4 0.00077 19.2 1.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|298674186|ref|YP_003725936.1| - 0.0011 18.3 1.4 0.72 9.3 0.1 2.3 2 0 0 2 2 2 2 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|298674186|ref|YP_003725936.1| - 0.0043 17.3 0.3 0.0053 17.0 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar RRN7 PF11781.3 gi|298674186|ref|YP_003725936.1| - 0.0074 15.7 6.0 0.033 13.7 4.2 1.9 1 1 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ISL3 PF14690.1 gi|298674186|ref|YP_003725936.1| - 0.0081 16.1 0.8 2.1 8.4 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|298674186|ref|YP_003725936.1| - 0.0089 15.9 0.2 3.8 7.5 0.0 2.3 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|298674186|ref|YP_003725936.1| - 0.012 14.8 3.8 0.074 12.3 2.6 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|298674186|ref|YP_003725936.1| - 0.012 15.3 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|298674186|ref|YP_003725936.1| - 0.015 14.9 0.8 0.026 14.1 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|298674186|ref|YP_003725936.1| - 0.018 14.2 1.0 4.3 6.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.16 gi|298674186|ref|YP_003725936.1| - 0.021 14.6 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 FYVE zinc finger Rubredoxin PF00301.15 gi|298674186|ref|YP_003725936.1| - 0.029 14.2 0.7 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin Baculo_ME53 PF06061.6 gi|298674186|ref|YP_003725936.1| - 0.042 12.8 0.4 0.041 12.8 0.3 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 RecR PF02132.10 gi|298674186|ref|YP_003725936.1| - 0.098 12.1 1.4 4 6.9 0.1 2.2 2 0 0 2 2 2 0 RecR protein zf-NADH-PPase PF09297.6 gi|298674186|ref|YP_003725936.1| - 0.11 12.0 1.3 2.7 7.6 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|298674186|ref|YP_003725936.1| - 0.12 12.0 1.3 0.54 10.0 0.9 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit FdhE PF04216.7 gi|298674186|ref|YP_003725936.1| - 0.13 11.9 2.0 0.15 11.7 1.1 1.3 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-H2C2_2 PF13465.1 gi|298674186|ref|YP_003725936.1| - 0.21 11.9 2.0 4.6 7.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.7 gi|298674186|ref|YP_003725936.1| - 0.22 11.3 2.3 0.35 10.6 1.6 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cys_rich_CPXG PF14255.1 gi|298674186|ref|YP_003725936.1| - 0.33 10.8 2.7 0.74 9.6 0.1 2.2 2 1 0 2 2 2 0 Cysteine-rich CPXCG TFIIS_C PF01096.13 gi|298674186|ref|YP_003725936.1| - 0.45 10.1 3.7 9.4 5.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Auto_anti-p27 PF06677.7 gi|298674186|ref|YP_003725936.1| - 1.1 9.0 3.5 9.1 6.1 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.1 gi|298674186|ref|YP_003725936.1| - 1.2 8.8 4.9 8.6 6.1 0.4 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|298674186|ref|YP_003725936.1| - 1.7 8.2 4.6 15 5.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|298674186|ref|YP_003725936.1| - 2.1 8.4 5.6 8.4 6.5 3.9 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn_ribbon_recom PF13408.1 gi|298674186|ref|YP_003725936.1| - 8 6.8 8.0 6.9 7.0 5.0 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF523 PF04463.7 gi|298674187|ref|YP_003725937.1| - 5.5e-36 123.4 0.0 9.8e-36 122.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|298674187|ref|YP_003725937.1| - 2.1e-15 56.6 0.4 3.6e-15 55.8 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) tRNA-synt_1c PF00749.16 gi|298674188|ref|YP_003725938.1| - 2.2e-61 207.2 0.0 2.8e-61 206.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|298674188|ref|YP_003725938.1| - 1.9e-28 99.3 0.0 3.3e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain TrmB PF01978.14 gi|298674189|ref|YP_003725939.1| - 0.0008 19.0 0.1 0.0016 18.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|298674189|ref|YP_003725939.1| - 0.0046 16.5 0.2 0.0093 15.6 0.1 1.5 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.7 gi|298674189|ref|YP_003725939.1| - 0.006 15.8 0.1 0.0087 15.2 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_24 PF13412.1 gi|298674189|ref|YP_003725939.1| - 0.013 14.9 0.3 0.018 14.4 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|298674189|ref|YP_003725939.1| - 0.013 15.2 0.7 0.027 14.2 0.1 2.0 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|298674189|ref|YP_003725939.1| - 0.028 14.5 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator RepL PF05732.6 gi|298674189|ref|YP_003725939.1| - 0.048 12.8 0.0 0.089 11.9 0.0 1.6 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) FAA_hydrolase PF01557.13 gi|298674190|ref|YP_003725940.1| - 4.1e-64 216.0 0.0 5e-64 215.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Flavodoxin_2 PF02525.12 gi|298674191|ref|YP_003725941.1| - 4.9e-56 189.4 0.0 5.7e-56 189.1 0.0 1.0 1 0 0 1 1 1 1 Flavodoxin-like fold FMN_red PF03358.10 gi|298674191|ref|YP_003725941.1| - 6.4e-12 45.2 0.0 1.7e-11 43.8 0.0 1.6 1 1 0 1 1 1 1 NADPH-dependent FMN reductase zf-C2H2_4 PF13894.1 gi|298674192|ref|YP_003725942.1| - 3.6e-07 30.0 1.9 4.2e-07 29.8 1.3 1.1 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_6 PF13912.1 gi|298674192|ref|YP_003725942.1| - 4.6e-07 29.5 1.1 5.3e-07 29.3 0.7 1.1 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|298674192|ref|YP_003725942.1| - 2.5e-06 27.4 3.3 3.1e-06 27.1 2.3 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.3 gi|298674192|ref|YP_003725942.1| - 1.9e-05 24.6 1.3 3.2e-05 23.9 0.9 1.4 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|298674192|ref|YP_003725942.1| - 3.4e-05 23.8 0.5 5.9e-05 23.1 0.3 1.4 1 1 0 1 1 1 1 Zinc-finger of C2H2 type zf-H2C2_2 PF13465.1 gi|298674192|ref|YP_003725942.1| - 0.00028 21.0 9.1 0.021 15.0 1.2 2.1 2 0 0 2 2 2 2 Zinc-finger double domain zf-C2H2_2 PF12756.2 gi|298674192|ref|YP_003725942.1| - 0.00076 19.5 2.8 0.00086 19.3 1.9 1.0 1 0 0 1 1 1 1 C2H2 type zinc-finger (2 copies) zf-H2C2_5 PF13909.1 gi|298674192|ref|YP_003725942.1| - 0.072 13.3 4.3 0.11 12.7 3.0 1.4 1 1 0 1 1 1 0 C2H2-type zinc-finger domain zf-BED PF02892.10 gi|298674192|ref|YP_003725942.1| - 0.11 12.2 5.5 0.25 11.1 3.8 1.5 1 1 0 1 1 1 0 BED zinc finger DUF629 PF04780.7 gi|298674192|ref|YP_003725942.1| - 0.11 10.9 1.7 0.11 10.9 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) Glyco_hydro_15 PF00723.16 gi|298674193|ref|YP_003725943.1| - 1.9e-23 82.7 0.5 2.2e-15 56.1 0.1 3.0 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 SnoaL PF07366.7 gi|298674194|ref|YP_003725944.1| - 4.3e-31 107.1 0.3 5.4e-31 106.7 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|298674194|ref|YP_003725944.1| - 5.5e-16 58.8 0.1 6.9e-16 58.5 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like domain DHODB_Fe-S_bind PF10418.4 gi|298674195|ref|YP_003725945.1| - 6.9e-13 47.8 5.8 1.2e-12 47.0 4.0 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|298674195|ref|YP_003725945.1| - 5e-11 43.1 0.0 8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|298674195|ref|YP_003725945.1| - 0.0036 17.4 0.0 0.013 15.5 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain DHO_dh PF01180.16 gi|298674196|ref|YP_003725946.1| - 2.2e-64 217.2 1.5 2.7e-64 216.9 1.1 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|298674196|ref|YP_003725946.1| - 7.7e-07 28.2 1.0 1.7e-05 23.7 0.7 2.2 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|298674196|ref|YP_003725946.1| - 0.00043 19.5 2.2 0.0011 18.2 1.5 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|298674196|ref|YP_003725946.1| - 0.00059 19.1 0.2 0.0016 17.7 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|298674196|ref|YP_003725946.1| - 0.0037 16.1 1.0 0.0084 15.0 0.6 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|298674196|ref|YP_003725946.1| - 0.0068 15.6 0.9 1.3 8.1 0.0 2.7 3 0 0 3 3 3 2 PcrB family DUF561 PF04481.7 gi|298674196|ref|YP_003725946.1| - 0.0087 15.0 3.9 0.014 14.3 0.3 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF561) ThiG PF05690.9 gi|298674196|ref|YP_003725946.1| - 0.087 11.8 0.2 0.087 11.8 0.1 2.0 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|298674196|ref|YP_003725946.1| - 0.12 11.3 1.1 0.83 8.5 0.7 2.5 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Porphobil_deam PF01379.15 gi|298674197|ref|YP_003725947.1| - 4.6e-70 234.8 0.0 6.3e-70 234.4 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|298674197|ref|YP_003725947.1| - 1.1e-10 41.3 0.0 2.4e-10 40.3 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.16 gi|298674198|ref|YP_003725948.1| - 4.6e-73 245.9 0.0 6.3e-73 245.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|298674198|ref|YP_003725948.1| - 0.017 14.0 0.0 0.022 13.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|298674198|ref|YP_003725948.1| - 0.083 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase ALAD PF00490.16 gi|298674199|ref|YP_003725949.1| - 3.7e-146 486.1 0.1 4.2e-146 485.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.10 gi|298674200|ref|YP_003725950.1| - 9.6e-39 132.3 0.1 2e-38 131.3 0.0 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|298674200|ref|YP_003725950.1| - 6.8e-36 123.3 0.3 1.4e-35 122.3 0.2 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|298674200|ref|YP_003725950.1| - 1.6e-23 82.5 1.3 4.5e-23 81.1 0.9 1.8 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|298674200|ref|YP_003725950.1| - 2.6e-10 40.5 0.1 7.1e-10 39.1 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|298674200|ref|YP_003725950.1| - 4.3e-08 33.1 0.0 9.6e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|298674200|ref|YP_003725950.1| - 3e-07 29.7 0.3 7.5e-07 28.4 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|298674200|ref|YP_003725950.1| - 2.5e-06 27.6 0.1 5.5e-06 26.5 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|298674200|ref|YP_003725950.1| - 1.6e-05 25.1 0.2 6.5e-05 23.1 0.1 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|298674200|ref|YP_003725950.1| - 2.8e-05 24.5 0.0 7.8e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|298674200|ref|YP_003725950.1| - 3.8e-05 23.1 0.1 0.0027 17.0 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain DapB_N PF01113.15 gi|298674200|ref|YP_003725950.1| - 5.2e-05 23.1 0.1 0.00014 21.7 0.1 1.8 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DFP PF04127.10 gi|298674200|ref|YP_003725950.1| - 7.4e-05 22.4 0.1 0.00016 21.3 0.0 1.5 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein OCD_Mu_crystall PF02423.10 gi|298674200|ref|YP_003725950.1| - 0.00048 18.9 0.1 0.00081 18.2 0.1 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family THF_DHG_CYH_C PF02882.14 gi|298674200|ref|YP_003725950.1| - 0.00054 19.0 0.6 0.071 12.1 0.2 2.9 3 1 0 3 3 3 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.13 gi|298674200|ref|YP_003725950.1| - 0.0011 18.9 1.5 0.004 17.1 0.4 2.3 2 1 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|298674200|ref|YP_003725950.1| - 0.0025 17.2 0.0 0.0054 16.1 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|298674200|ref|YP_003725950.1| - 0.0029 17.5 0.1 0.0056 16.6 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|298674200|ref|YP_003725950.1| - 0.0093 15.2 0.2 0.026 13.7 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|298674200|ref|YP_003725950.1| - 0.01 15.6 0.2 0.041 13.6 0.1 2.0 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Oxidored_nitro PF00148.14 gi|298674200|ref|YP_003725950.1| - 0.017 13.7 0.9 0.032 12.8 0.5 1.6 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase 3HCDH_N PF02737.13 gi|298674200|ref|YP_003725950.1| - 0.018 14.6 0.6 0.047 13.3 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V-ATPase_G PF03179.10 gi|298674200|ref|YP_003725950.1| - 0.05 13.8 4.7 0.51 10.6 0.6 3.2 3 0 0 3 3 3 0 Vacuolar (H+)-ATPase G subunit OTCace PF00185.19 gi|298674200|ref|YP_003725950.1| - 0.053 13.3 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Saccharop_dh PF03435.13 gi|298674200|ref|YP_003725950.1| - 0.059 12.3 0.1 0.1 11.5 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF2115 PF09888.4 gi|298674200|ref|YP_003725950.1| - 0.21 11.6 2.6 0.15 12.1 0.5 1.7 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2115) ThiF PF00899.16 gi|298674200|ref|YP_003725950.1| - 0.68 9.7 3.3 2.2 8.0 0.2 2.7 1 1 1 2 2 2 0 ThiF family NAD_binding_7 PF13241.1 gi|298674201|ref|YP_003725951.1| - 1.5e-20 73.3 1.2 1.2e-18 67.2 0.1 2.1 2 0 0 2 2 2 2 Putative NAD(P)-binding Duffy_binding PF05424.6 gi|298674201|ref|YP_003725951.1| - 0.01 15.6 0.6 0.016 15.0 0.4 1.2 1 0 0 1 1 1 0 Duffy binding domain TrkA_N PF02254.13 gi|298674201|ref|YP_003725951.1| - 0.023 14.6 0.5 0.041 13.8 0.4 1.4 1 0 0 1 1 1 0 TrkA-N domain TPM PF04536.9 gi|298674201|ref|YP_003725951.1| - 0.064 13.1 0.0 1.3 8.9 0.0 2.1 1 1 0 1 1 1 0 TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase Saccharop_dh PF03435.13 gi|298674201|ref|YP_003725951.1| - 0.1 11.5 0.0 0.13 11.2 0.0 1.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase HTH_24 PF13412.1 gi|298674202|ref|YP_003725952.1| - 0.00045 19.5 0.5 0.0019 17.5 0.1 2.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|298674202|ref|YP_003725952.1| - 0.00089 19.3 0.0 0.0023 17.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|298674202|ref|YP_003725952.1| - 0.00093 18.9 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|298674202|ref|YP_003725952.1| - 0.016 15.5 0.0 0.048 13.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.17 gi|298674202|ref|YP_003725952.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.1 gi|298674202|ref|YP_003725952.1| - 0.024 13.8 0.0 0.049 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.14 gi|298674202|ref|YP_003725952.1| - 0.033 13.8 0.0 0.17 11.6 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|298674202|ref|YP_003725952.1| - 0.044 13.4 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2805 PF10985.3 gi|298674202|ref|YP_003725952.1| - 0.045 13.7 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2805) HEPN PF05168.9 gi|298674202|ref|YP_003725952.1| - 0.095 12.5 0.1 1 9.2 0.0 2.1 1 1 1 2 2 2 0 HEPN domain HTH_29 PF13551.1 gi|298674202|ref|YP_003725952.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.1 gi|298674203|ref|YP_003725953.1| - 3.2e-10 39.3 0.0 5.5e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|298674203|ref|YP_003725953.1| - 5.9e-05 22.3 0.8 0.00027 20.2 0.5 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|298674203|ref|YP_003725953.1| - 0.0079 15.4 0.0 0.019 14.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.14 gi|298674203|ref|YP_003725953.1| - 0.012 15.3 0.1 0.032 13.9 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB IF2_N PF04760.10 gi|298674203|ref|YP_003725953.1| - 0.021 14.4 0.2 0.094 12.3 0.1 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region AsnC_trans_reg PF01037.16 gi|298674203|ref|YP_003725953.1| - 0.034 13.8 0.0 0.063 12.9 0.0 1.5 1 0 0 1 1 1 0 AsnC family HTH_11 PF08279.7 gi|298674203|ref|YP_003725953.1| - 0.042 13.4 0.2 0.12 12.0 0.0 1.8 2 0 0 2 2 2 0 HTH domain RHH_1 PF01402.16 gi|298674203|ref|YP_003725953.1| - 0.042 13.7 1.9 3.6 7.6 0.1 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Radical_SAM PF04055.16 gi|298674204|ref|YP_003725954.1| - 7.4e-19 68.5 0.1 2.5e-18 66.7 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298674204|ref|YP_003725954.1| - 5e-10 39.6 0.0 1.2e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|298674204|ref|YP_003725954.1| - 1.6e-07 31.5 2.6 4.2e-07 30.2 1.8 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|298674204|ref|YP_003725954.1| - 2.5e-07 30.7 0.0 5.5e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain CcmE PF03100.10 gi|298674205|ref|YP_003725955.1| - 6.4e-08 32.2 0.0 6.9e-08 32.1 0.0 1.0 1 0 0 1 1 1 1 CcmE PBP5_C PF07943.8 gi|298674205|ref|YP_003725955.1| - 0.07 13.1 0.2 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 Penicillin-binding protein 5, C-terminal domain PTCB-BRCT PF12738.2 gi|298674205|ref|YP_003725955.1| - 0.11 12.3 0.1 0.24 11.2 0.0 1.6 2 0 0 2 2 2 0 twin BRCT domain tRNA_anti-like PF12869.2 gi|298674205|ref|YP_003725955.1| - 0.32 10.4 2.3 2.2 7.7 1.6 1.9 1 1 0 1 1 1 0 tRNA_anti-like polyprenyl_synt PF00348.12 gi|298674206|ref|YP_003725956.1| - 9e-48 162.3 0.4 1.1e-47 162.0 0.2 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase DUF3832 PF12909.2 gi|298674206|ref|YP_003725956.1| - 0.08 13.0 0.7 0.08 13.0 0.5 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3832) UBN2_2 PF14227.1 gi|298674206|ref|YP_003725956.1| - 0.086 12.3 0.7 0.16 11.4 0.5 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type Radical_SAM PF04055.16 gi|298674207|ref|YP_003725957.1| - 5.6e-16 59.1 0.0 8.1e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|298674207|ref|YP_003725957.1| - 1.8e-09 37.8 0.1 7e-09 35.8 0.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|298674207|ref|YP_003725957.1| - 5.1e-05 23.4 0.0 8.8e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain V-ATPase_G PF03179.10 gi|298674208|ref|YP_003725958.1| - 5.3e-06 26.6 21.9 6.4e-06 26.4 15.2 1.0 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|298674208|ref|YP_003725958.1| - 0.00037 20.2 27.8 0.003 17.3 13.0 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) RRF_GI PF12614.3 gi|298674208|ref|YP_003725958.1| - 0.062 13.1 4.6 0.042 13.6 1.8 1.6 1 1 1 2 2 2 0 Ribosome recycling factor HrpE PF06188.7 gi|298674208|ref|YP_003725958.1| - 0.12 12.1 7.7 0.26 11.0 5.4 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|298674208|ref|YP_003725958.1| - 0.39 11.1 11.7 1 9.8 3.3 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) AAA_13 PF13166.1 gi|298674208|ref|YP_003725958.1| - 0.42 9.0 20.6 0.44 8.9 14.3 1.0 1 0 0 1 1 1 0 AAA domain DUF3552 PF12072.3 gi|298674208|ref|YP_003725958.1| - 0.49 9.5 27.8 0.2 10.8 6.3 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) Exonuc_VII_L PF02601.10 gi|298674208|ref|YP_003725958.1| - 0.89 8.6 9.0 1.2 8.2 6.2 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit DivIVA PF05103.8 gi|298674208|ref|YP_003725958.1| - 1.1 9.3 22.2 0.26 11.3 8.4 2.1 1 1 1 2 2 2 0 DivIVA protein DUF45 PF01863.12 gi|298674208|ref|YP_003725958.1| - 1.9 8.2 8.6 2 8.1 6.0 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF45 PLRV_ORF5 PF01690.12 gi|298674208|ref|YP_003725958.1| - 2.1 7.4 10.9 2.3 7.2 7.5 1.0 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Peptidase_U57 PF05582.7 gi|298674208|ref|YP_003725958.1| - 2.2 7.1 10.7 2.8 6.8 7.4 1.0 1 0 0 1 1 1 0 YabG peptidase U57 DDHD PF02862.12 gi|298674208|ref|YP_003725958.1| - 2.9 7.6 10.9 3.3 7.4 7.6 1.1 1 0 0 1 1 1 0 DDHD domain GPCR_chapero_1 PF11904.3 gi|298674208|ref|YP_003725958.1| - 3.1 6.8 9.1 3.4 6.7 6.3 1.0 1 0 0 1 1 1 0 GPCR-chaperone DUF3807 PF12720.2 gi|298674208|ref|YP_003725958.1| - 4.4 7.4 14.7 5.4 7.1 10.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) DUF2252 PF10009.4 gi|298674208|ref|YP_003725958.1| - 6.2 5.6 9.7 6 5.6 0.4 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2252) Vfa1 PF08432.5 gi|298674208|ref|YP_003725958.1| - 7.5 6.5 20.3 9.4 6.2 14.0 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 Borrelia_P83 PF05262.6 gi|298674208|ref|YP_003725958.1| - 8.8 4.4 22.4 11 4.1 15.5 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein V_ATPase_I PF01496.14 gi|298674209|ref|YP_003725959.1| - 4.3e-110 368.7 9.3 7e-79 265.5 0.5 2.8 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family Syntaxin PF00804.20 gi|298674209|ref|YP_003725959.1| - 0.0025 17.9 7.4 0.11 12.7 0.6 2.8 3 0 0 3 3 3 2 Syntaxin Prefoldin_2 PF01920.15 gi|298674209|ref|YP_003725959.1| - 0.0058 16.3 10.0 0.27 10.9 0.9 2.7 3 0 0 3 3 2 2 Prefoldin subunit Prefoldin PF02996.12 gi|298674209|ref|YP_003725959.1| - 0.023 14.3 1.8 1.4 8.6 0.1 2.5 2 0 0 2 2 2 0 Prefoldin subunit DUF1664 PF07889.7 gi|298674209|ref|YP_003725959.1| - 0.11 12.3 2.0 2.6 7.8 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) GAS PF13851.1 gi|298674209|ref|YP_003725959.1| - 0.11 11.7 8.7 0.046 12.9 0.3 2.7 3 0 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF3810 PF12725.2 gi|298674209|ref|YP_003725959.1| - 0.14 11.0 2.9 2.1 7.1 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) NPV_P10 PF05531.7 gi|298674209|ref|YP_003725959.1| - 0.18 12.0 3.3 5.6 7.2 0.5 3.0 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein TBPIP PF07106.8 gi|298674209|ref|YP_003725959.1| - 0.23 10.9 5.0 2 7.9 0.3 2.4 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Vps51 PF08700.6 gi|298674209|ref|YP_003725959.1| - 0.45 10.3 4.4 0.34 10.7 0.2 2.8 2 1 0 2 2 2 0 Vps51/Vps67 DUF972 PF06156.8 gi|298674209|ref|YP_003725959.1| - 0.48 10.8 2.6 15 5.9 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Syntaxin-6_N PF09177.6 gi|298674209|ref|YP_003725959.1| - 1.9 8.9 9.6 3.7 8.0 0.2 2.9 3 1 0 3 3 2 0 Syntaxin 6, N-terminal BLOC1_2 PF10046.4 gi|298674209|ref|YP_003725959.1| - 5.3 7.2 11.4 2.2 8.4 0.5 3.4 4 0 0 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cauli_AT PF03233.8 gi|298674209|ref|YP_003725959.1| - 7.6 6.2 10.2 2.1 8.0 2.0 2.4 1 1 1 2 2 2 0 Aphid transmission protein FlaC_arch PF05377.6 gi|298674209|ref|YP_003725959.1| - 8.6 6.3 13.2 27 4.7 0.3 3.9 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) ATP-synt_C PF00137.16 gi|298674210|ref|YP_003725960.1| - 1.3e-18 66.6 12.1 1.6e-18 66.3 8.4 1.1 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|298674211|ref|YP_003725961.1| - 2.8e-33 114.8 19.2 9.2e-33 113.1 13.3 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.13 gi|298674211|ref|YP_003725961.1| - 6.2e-07 29.2 11.8 1.3e-06 28.2 8.1 1.5 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) DUF3552 PF12072.3 gi|298674211|ref|YP_003725961.1| - 0.091 11.9 19.8 0.17 11.0 13.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) RNA_pol_Rpb4 PF03874.11 gi|298674211|ref|YP_003725961.1| - 0.1 12.5 6.8 0.25 11.3 4.7 1.7 1 1 0 1 1 1 0 RNA polymerase Rpb4 DivIVA PF05103.8 gi|298674211|ref|YP_003725961.1| - 0.18 11.8 15.2 0.034 14.1 6.7 2.2 1 1 1 2 2 2 0 DivIVA protein HrcA_DNA-bdg PF03444.10 gi|298674211|ref|YP_003725961.1| - 0.27 10.6 1.7 1.3 8.5 0.1 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ScpA_ScpB PF02616.9 gi|298674211|ref|YP_003725961.1| - 0.68 9.4 10.7 1.3 8.5 7.4 1.5 1 1 0 1 1 1 0 ScpA/B protein NCKAP5 PF15246.1 gi|298674211|ref|YP_003725961.1| - 1.5 8.1 7.4 2 7.7 5.1 1.1 1 0 0 1 1 1 0 Nck-associated protein 5, Peripheral clock protein DUF2252 PF10009.4 gi|298674211|ref|YP_003725961.1| - 1.7 7.4 6.4 1.9 7.2 4.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2252) Phage_GP20 PF06810.6 gi|298674211|ref|YP_003725961.1| - 6.7 6.1 16.0 12 5.2 11.1 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 vATP-synt_AC39 PF01992.11 gi|298674212|ref|YP_003725962.1| - 5.5e-88 295.3 8.4 6.3e-88 295.1 5.8 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.12 gi|298674213|ref|YP_003725963.1| - 3e-19 69.1 0.1 3.5e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit YcgL PF05166.8 gi|298674213|ref|YP_003725963.1| - 0.021 14.9 0.0 1.8 8.7 0.0 2.1 1 1 1 2 2 2 0 YcgL domain DUF1448 PF07289.6 gi|298674213|ref|YP_003725963.1| - 0.063 12.1 0.0 0.067 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1448) ATP-synt_ab PF00006.20 gi|298674214|ref|YP_003725964.1| - 1e-96 322.5 0.0 1.4e-96 322.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|298674214|ref|YP_003725964.1| - 9.3e-20 71.2 1.2 1.8e-19 70.2 0.8 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|298674214|ref|YP_003725964.1| - 2.9e-15 56.2 1.0 2.9e-15 56.2 0.7 2.6 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|298674214|ref|YP_003725964.1| - 0.0025 17.8 0.2 1.2 9.2 0.0 2.7 2 0 0 2 2 2 2 Peptidase family M23 AAA_22 PF13401.1 gi|298674214|ref|YP_003725964.1| - 0.051 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|298674214|ref|YP_003725964.1| - 0.17 11.6 1.5 2.6 7.8 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|298674215|ref|YP_003725965.1| - 6.5e-62 208.8 0.0 8.4e-62 208.4 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|298674215|ref|YP_003725965.1| - 1.8e-16 60.5 0.1 3.9e-16 59.5 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|298674215|ref|YP_003725965.1| - 8.7e-11 41.8 1.9 8.7e-11 41.8 1.3 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|298674215|ref|YP_003725965.1| - 1.3e-06 28.1 0.7 3.1e-06 26.9 0.5 1.7 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|298674216|ref|YP_003725966.1| - 2.5e-64 216.4 5.8 2.8e-64 216.2 4.0 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Filament PF00038.16 gi|298674216|ref|YP_003725966.1| - 0.0083 15.6 0.9 0.0083 15.6 0.6 1.7 2 0 0 2 2 2 1 Intermediate filament protein ApoLp-III PF07464.6 gi|298674216|ref|YP_003725966.1| - 0.057 13.4 2.8 0.78 9.7 0.1 2.3 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Ead_Ea22 PF13935.1 gi|298674216|ref|YP_003725966.1| - 0.11 12.7 0.7 4.6 7.5 0.1 2.2 1 1 1 2 2 2 0 Ead/Ea22-like protein TRAM PF01938.15 gi|298674217|ref|YP_003725967.1| - 2.5e-15 55.9 0.2 2.8e-15 55.8 0.1 1.0 1 0 0 1 1 1 1 TRAM domain DEAD PF00270.24 gi|298674218|ref|YP_003725968.1| - 1e-52 178.0 0.3 3.1e-52 176.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|298674218|ref|YP_003725968.1| - 5.1e-29 99.9 0.1 3.6e-27 94.0 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|298674218|ref|YP_003725968.1| - 1.7e-05 23.7 0.0 2.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|298674218|ref|YP_003725968.1| - 0.00024 21.0 0.0 0.00059 19.7 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CMS1 PF14617.1 gi|298674218|ref|YP_003725968.1| - 0.00025 20.2 0.1 0.0025 16.9 0.1 2.3 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit Helicase_C_2 PF13307.1 gi|298674218|ref|YP_003725968.1| - 0.0028 17.6 0.0 0.12 12.3 0.0 2.3 2 0 0 2 2 2 1 Helicase C-terminal domain Helicase_RecD PF05127.9 gi|298674218|ref|YP_003725968.1| - 0.0079 15.8 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 Helicase AAA_30 PF13604.1 gi|298674218|ref|YP_003725968.1| - 0.019 14.5 0.0 0.068 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain Flavi_DEAD PF07652.9 gi|298674218|ref|YP_003725968.1| - 0.03 14.0 0.1 0.09 12.5 0.1 1.9 1 1 0 1 1 1 0 Flavivirus DEAD domain HTH_3 PF01381.17 gi|298674219|ref|YP_003725969.1| - 1.9e-11 43.6 0.0 2.1e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|298674219|ref|YP_003725969.1| - 7.4e-06 25.9 0.0 8.3e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|298674219|ref|YP_003725969.1| - 0.06 13.5 0.0 0.072 13.3 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|298674219|ref|YP_003725969.1| - 0.068 12.9 0.1 0.088 12.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_25 PF13413.1 gi|298674219|ref|YP_003725969.1| - 0.074 12.6 0.0 0.088 12.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|298674219|ref|YP_003725969.1| - 0.08 13.1 0.1 0.087 13.0 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF4367 PF14285.1 gi|298674220|ref|YP_003725970.1| - 2.5e-14 52.9 8.2 2.5e-14 52.9 5.7 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4367) DUF2092 PF09865.4 gi|298674220|ref|YP_003725970.1| - 0.0013 17.8 0.2 0.0025 16.9 0.2 1.5 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) EndoU_bacteria PF14436.1 gi|298674220|ref|YP_003725970.1| - 0.0093 15.8 1.5 0.89 9.3 0.2 2.6 2 0 0 2 2 2 2 Bacterial EndoU nuclease PLDc_N PF13396.1 gi|298674221|ref|YP_003725971.1| - 2.8e-15 55.7 1.9 2.8e-15 55.7 1.3 1.8 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal DUF4184 PF13803.1 gi|298674221|ref|YP_003725971.1| - 0.00026 20.3 0.3 0.00029 20.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4184) LGT PF01790.13 gi|298674221|ref|YP_003725971.1| - 0.0071 15.3 2.5 0.0076 15.2 1.8 1.0 1 0 0 1 1 1 1 Prolipoprotein diacylglyceryl transferase NfeD PF01957.13 gi|298674221|ref|YP_003725971.1| - 0.016 15.3 0.9 0.019 15.0 0.6 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4203 PF13886.1 gi|298674221|ref|YP_003725971.1| - 0.027 13.9 3.5 0.033 13.6 2.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) TMEM138 PF14935.1 gi|298674221|ref|YP_003725971.1| - 0.034 14.4 0.2 0.041 14.2 0.2 1.0 1 0 0 1 1 1 0 Transmembrane protein 138 Per1 PF04080.8 gi|298674221|ref|YP_003725971.1| - 0.058 12.8 0.3 0.058 12.8 0.2 1.0 1 0 0 1 1 1 0 Per1-like Tetraspannin PF00335.15 gi|298674221|ref|YP_003725971.1| - 0.08 12.2 1.5 0.1 11.8 1.0 1.3 1 0 0 1 1 1 0 Tetraspanin family DUF2500 PF10694.4 gi|298674221|ref|YP_003725971.1| - 0.091 12.7 3.9 0.61 10.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2500) DUF2516 PF10724.4 gi|298674221|ref|YP_003725971.1| - 0.094 12.7 4.7 0.2 11.6 3.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2516) DUF4131 PF13567.1 gi|298674221|ref|YP_003725971.1| - 0.11 11.9 1.0 0.15 11.4 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4389 PF14333.1 gi|298674221|ref|YP_003725971.1| - 0.16 11.6 2.1 1.1 8.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4389) Tic20 PF09685.5 gi|298674221|ref|YP_003725971.1| - 0.17 11.9 8.4 1.6 8.7 2.5 2.1 1 1 1 2 2 2 0 Tic20-like protein DUF4282 PF14110.1 gi|298674221|ref|YP_003725971.1| - 0.2 11.8 4.3 0.24 11.5 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Tmemb_40 PF10160.4 gi|298674221|ref|YP_003725971.1| - 0.23 10.6 2.0 0.26 10.4 1.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein COX2_TM PF02790.10 gi|298674221|ref|YP_003725971.1| - 0.29 11.0 6.5 2.6 8.0 0.2 2.1 1 1 1 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain OppC_N PF12911.2 gi|298674221|ref|YP_003725971.1| - 0.35 10.2 3.4 3.9 6.9 0.3 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF3397 PF11877.3 gi|298674221|ref|YP_003725971.1| - 0.39 10.7 7.2 0.86 9.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3397) zf-DHHC PF01529.15 gi|298674221|ref|YP_003725971.1| - 0.39 10.0 2.8 0.46 9.8 2.0 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2029 PF09594.5 gi|298674221|ref|YP_003725971.1| - 0.42 10.0 2.5 4.9 6.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2029) DUF2304 PF10066.4 gi|298674221|ref|YP_003725971.1| - 0.48 10.2 4.4 0.75 9.6 2.8 1.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2304) P12 PF12669.2 gi|298674221|ref|YP_003725971.1| - 0.64 10.2 5.8 3.3 7.9 1.1 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family Sigma_reg_N PF13800.1 gi|298674221|ref|YP_003725971.1| - 2 8.5 4.8 1.7 8.7 0.1 2.0 1 1 1 2 2 2 0 Sigma factor regulator N-terminal DUF4381 PF14316.1 gi|298674221|ref|YP_003725971.1| - 2.1 8.4 3.8 5.8 7.0 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Yip1 PF04893.12 gi|298674221|ref|YP_003725971.1| - 3.9 6.9 8.4 5.7 6.4 5.8 1.3 1 1 0 1 1 1 0 Yip1 domain DUF805 PF05656.9 gi|298674221|ref|YP_003725971.1| - 4 7.2 7.0 9.9 6.0 4.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF912 PF06024.7 gi|298674221|ref|YP_003725971.1| - 6.7 6.8 5.6 0.82 9.7 0.5 1.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Intg_mem_TP0381 PF09529.5 gi|298674221|ref|YP_003725971.1| - 7.3 5.7 10.6 1.3e+02 1.7 7.9 1.9 1 1 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) DUF3139 PF11337.3 gi|298674221|ref|YP_003725971.1| - 9 6.6 9.1 1.5 9.1 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) DUF3955 PF13127.1 gi|298674222|ref|YP_003725972.1| - 0.015 14.8 2.2 2.1 7.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) Spore_YabQ PF09578.5 gi|298674222|ref|YP_003725972.1| - 0.069 13.1 4.2 0.13 12.2 2.9 1.4 1 0 0 1 1 1 0 Spore cortex protein YabQ (Spore_YabQ) Cation_ATPase_C PF00689.16 gi|298674222|ref|YP_003725972.1| - 1.7 8.1 5.8 2.3 7.7 4.1 1.2 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus EF1_GNE PF00736.14 gi|298674225|ref|YP_003725975.1| - 3.9e-23 80.9 0.8 4.4e-23 80.7 0.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|298674225|ref|YP_003725975.1| - 0.033 14.3 1.5 2.6 8.2 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1610 PF07754.6 gi|298674226|ref|YP_003725976.1| - 1.1e-13 50.9 17.0 8.8e-07 28.9 4.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|298674226|ref|YP_003725976.1| - 0.00026 20.7 13.0 0.022 14.5 9.0 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|298674226|ref|YP_003725976.1| - 0.0063 15.6 17.3 0.15 11.3 1.6 3.8 2 1 0 2 2 2 2 zinc-ribbon domain tRNA-synt_1g PF09334.6 gi|298674226|ref|YP_003725976.1| - 0.0084 14.8 1.2 0.0084 14.8 0.8 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) OrfB_Zn_ribbon PF07282.6 gi|298674226|ref|YP_003725976.1| - 0.057 13.0 9.4 0.97 9.1 3.6 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-HIT PF04438.11 gi|298674226|ref|YP_003725976.1| - 0.058 13.0 5.0 0.058 13.0 3.5 2.9 1 1 1 2 2 2 0 HIT zinc finger zinc_ribbon_2 PF13240.1 gi|298674226|ref|YP_003725976.1| - 0.069 12.6 18.4 0.33 10.4 2.6 3.5 2 2 1 3 3 3 0 zinc-ribbon domain C1_1 PF00130.17 gi|298674226|ref|YP_003725976.1| - 0.18 11.5 8.9 0.22 11.2 0.4 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-tcix PF14952.1 gi|298674226|ref|YP_003725976.1| - 0.19 11.0 0.0 0.19 11.0 0.0 3.2 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Tnp_zf-ribbon_2 PF13842.1 gi|298674226|ref|YP_003725976.1| - 0.26 11.7 10.9 0.49 10.8 1.3 3.0 3 0 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zf-H2C2_2 PF13465.1 gi|298674226|ref|YP_003725976.1| - 0.28 11.5 0.7 0.28 11.5 0.5 3.4 2 2 2 4 4 4 0 Zinc-finger double domain DUF1272 PF06906.6 gi|298674226|ref|YP_003725976.1| - 0.39 10.6 12.5 3.3 7.6 8.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) YhfH PF14149.1 gi|298674226|ref|YP_003725976.1| - 0.59 9.9 0.1 0.59 9.9 0.1 2.8 2 1 0 2 2 1 0 YhfH-like protein PolC_DP2 PF03833.8 gi|298674226|ref|YP_003725976.1| - 0.82 7.2 6.2 0.9 7.1 4.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF2039 PF10217.4 gi|298674226|ref|YP_003725976.1| - 0.83 9.7 5.8 0.14 12.1 1.8 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Zn-ribbon_8 PF09723.5 gi|298674226|ref|YP_003725976.1| - 1.2 9.1 12.6 17 5.4 0.0 3.2 2 1 0 2 2 2 0 Zinc ribbon domain IBR PF01485.16 gi|298674226|ref|YP_003725976.1| - 1.4 8.8 10.9 10 6.1 6.2 2.3 1 1 1 2 2 2 0 IBR domain Zn_Tnp_IS91 PF14319.1 gi|298674226|ref|YP_003725976.1| - 1.4 8.4 9.7 2.4 7.7 6.8 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain Nudix_N_2 PF14803.1 gi|298674226|ref|YP_003725976.1| - 1.5 8.5 15.1 0.84 9.3 2.9 3.2 1 1 1 2 2 2 0 Nudix N-terminal NMD3 PF04981.8 gi|298674226|ref|YP_003725976.1| - 1.7 7.6 7.4 2.9 6.9 5.1 1.3 1 1 0 1 1 1 0 NMD3 family Spt4 PF06093.8 gi|298674226|ref|YP_003725976.1| - 1.8 8.5 9.5 6.5 6.7 3.2 2.1 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger UPF0547 PF10571.4 gi|298674226|ref|YP_003725976.1| - 1.9 8.2 13.9 2.6 7.8 0.6 3.6 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 ADK_lid PF05191.9 gi|298674226|ref|YP_003725976.1| - 2 8.1 9.6 3.5 7.3 0.1 3.6 3 1 1 4 4 4 0 Adenylate kinase, active site lid zf-HYPF PF07503.7 gi|298674226|ref|YP_003725976.1| - 2.5 7.5 15.4 2.2 7.7 6.9 2.1 2 0 0 2 2 2 0 HypF finger zinc-ribbons_6 PF07191.7 gi|298674226|ref|YP_003725976.1| - 2.7 7.8 9.8 39 4.1 6.8 2.2 1 1 0 1 1 1 0 zinc-ribbons zf-B_box PF00643.19 gi|298674226|ref|YP_003725976.1| - 3.4 7.6 11.3 12 5.9 0.1 2.9 2 1 0 2 2 2 0 B-box zinc finger C1_4 PF07975.7 gi|298674226|ref|YP_003725976.1| - 3.6 7.6 10.6 2.4 8.2 4.2 2.1 1 1 0 2 2 2 0 TFIIH C1-like domain zf-C3HC4 PF00097.20 gi|298674226|ref|YP_003725976.1| - 4.9 6.8 13.4 2.9 7.6 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-LITAF-like PF10601.4 gi|298674226|ref|YP_003725976.1| - 5.4 6.9 11.0 11 5.9 0.2 3.2 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-Mss51 PF13824.1 gi|298674226|ref|YP_003725976.1| - 5.9 6.8 12.4 8.6 6.3 1.6 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Opy2 PF09463.5 gi|298674226|ref|YP_003725976.1| - 6 7.0 14.6 1 9.4 2.1 2.9 3 0 0 3 3 3 0 Opy2 protein zf-C3HC4_4 PF15227.1 gi|298674226|ref|YP_003725976.1| - 7.2 6.5 10.3 5.4 6.9 0.6 2.3 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING zf-RING_5 PF14634.1 gi|298674226|ref|YP_003725976.1| - 8.4 6.2 13.1 2.1 8.1 2.1 2.6 2 1 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_4 PF13717.1 gi|298674226|ref|YP_003725976.1| - 9.5 6.0 15.1 6 6.6 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain AA_kinase PF00696.23 gi|298674227|ref|YP_003725977.1| - 1.7e-13 50.7 0.0 1e-11 44.8 0.0 2.0 1 1 0 1 1 1 1 Amino acid kinase family Cpn60_TCP1 PF00118.19 gi|298674227|ref|YP_003725977.1| - 0.013 14.1 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family Peptidase_C5 PF00770.13 gi|298674227|ref|YP_003725977.1| - 0.057 12.9 0.0 3.5 7.1 0.0 2.2 2 0 0 2 2 2 0 Adenovirus endoprotease Hydantoinase_A PF01968.13 gi|298674228|ref|YP_003725978.1| - 9.1e-19 67.6 1.3 5.8e-17 61.7 0.1 2.8 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.1 gi|298674228|ref|YP_003725978.1| - 1.7e-05 23.3 0.1 0.0014 17.0 0.0 2.2 2 0 0 2 2 2 2 MutL protein StbA PF06406.6 gi|298674228|ref|YP_003725978.1| - 0.0027 16.6 1.5 0.24 10.2 0.1 2.6 2 1 1 3 3 3 2 StbA protein Hydant_A_N PF05378.8 gi|298674228|ref|YP_003725978.1| - 0.021 14.3 4.2 0.46 9.9 0.1 3.3 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region SHS2_FTSA PF02491.15 gi|298674228|ref|YP_003725978.1| - 0.056 13.3 0.2 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA ATP-grasp_3 PF02655.9 gi|298674229|ref|YP_003725979.1| - 9e-40 136.1 0.0 1.3e-39 135.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|298674229|ref|YP_003725979.1| - 2.5e-12 46.9 0.0 2e-11 43.9 0.0 2.3 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298674229|ref|YP_003725979.1| - 5.9e-09 35.1 0.0 1.7e-06 27.0 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|298674229|ref|YP_003725979.1| - 8.3e-06 25.3 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|298674229|ref|YP_003725979.1| - 0.00031 20.2 0.3 0.022 14.2 0.0 2.3 2 0 0 2 2 2 1 RimK-like ATP-grasp domain TTL PF03133.10 gi|298674229|ref|YP_003725979.1| - 0.015 14.1 0.2 2.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family ATPgrasp_ST PF14397.1 gi|298674229|ref|YP_003725979.1| - 0.086 11.9 0.0 0.84 8.6 0.0 2.1 1 1 1 2 2 2 0 Sugar-transfer associated ATP-grasp Acyl_transf_3 PF01757.17 gi|298674230|ref|YP_003725980.1| - 0.0019 17.1 8.8 0.0024 16.7 6.1 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF4131 PF13567.1 gi|298674230|ref|YP_003725980.1| - 1.2 8.5 5.2 1.8 7.9 3.4 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PhaG_MnhG_YufB PF03334.9 gi|298674230|ref|YP_003725980.1| - 1.4 8.9 14.7 0.19 11.8 3.8 2.2 2 0 0 2 2 2 0 Na+/H+ antiporter subunit 2TM PF13239.1 gi|298674230|ref|YP_003725980.1| - 2.3 8.3 6.6 0.2 11.7 1.1 1.7 2 1 0 2 2 2 0 2TM domain DUF2512 PF10710.4 gi|298674230|ref|YP_003725980.1| - 4.6 6.7 7.3 9.4 5.6 5.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2512) GrpE PF01025.14 gi|298674231|ref|YP_003725981.1| - 1.3e-55 187.4 7.2 1.8e-55 186.9 5.0 1.3 1 0 0 1 1 1 1 GrpE Bac_GDH PF05088.7 gi|298674231|ref|YP_003725981.1| - 0.00054 17.5 1.0 0.00056 17.4 0.7 1.0 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase TBPIP PF07106.8 gi|298674231|ref|YP_003725981.1| - 0.0045 16.5 5.1 0.008 15.7 3.5 1.5 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Osmo_CC PF08946.5 gi|298674231|ref|YP_003725981.1| - 0.012 15.6 0.9 0.038 14.0 0.6 1.9 1 0 0 1 1 1 0 Osmosensory transporter coiled coil TSC22 PF01166.13 gi|298674231|ref|YP_003725981.1| - 0.012 15.5 1.8 0.035 14.0 1.3 1.8 1 0 0 1 1 1 0 TSC-22/dip/bun family FlxA PF14282.1 gi|298674231|ref|YP_003725981.1| - 0.021 14.7 2.7 0.021 14.7 1.9 2.4 2 1 0 2 2 2 0 FlxA-like protein DUF812 PF05667.6 gi|298674231|ref|YP_003725981.1| - 0.03 12.8 7.4 0.045 12.2 5.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) End3 PF12761.2 gi|298674231|ref|YP_003725981.1| - 0.038 13.6 9.6 0.037 13.6 5.8 1.6 2 0 0 2 2 1 0 Actin cytoskeleton-regulatory complex protein END3 Hema_stalk PF08720.5 gi|298674231|ref|YP_003725981.1| - 0.045 13.2 1.4 0.064 12.7 1.0 1.2 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk DUF4407 PF14362.1 gi|298674231|ref|YP_003725981.1| - 0.051 12.5 4.5 0.072 12.0 3.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Bin3 PF06859.7 gi|298674231|ref|YP_003725981.1| - 0.052 13.5 0.2 0.88 9.5 0.0 2.2 2 0 0 2 2 2 0 Bicoid-interacting protein 3 (Bin3) EAP30 PF04157.11 gi|298674231|ref|YP_003725981.1| - 0.082 12.0 3.5 0.14 11.3 2.4 1.4 1 1 0 1 1 1 0 EAP30/Vps36 family Lge1 PF11488.3 gi|298674231|ref|YP_003725981.1| - 0.098 12.8 6.8 0.031 14.4 2.1 2.1 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 AAA_32 PF13654.1 gi|298674231|ref|YP_003725981.1| - 0.11 11.1 5.9 0.2 10.2 4.0 1.4 1 1 1 2 2 2 0 AAA domain IncA PF04156.9 gi|298674231|ref|YP_003725981.1| - 0.13 11.8 8.6 0.21 11.1 5.9 1.4 1 0 0 1 1 1 0 IncA protein DUF4140 PF13600.1 gi|298674231|ref|YP_003725981.1| - 0.14 12.6 3.3 0.31 11.5 2.3 1.7 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DDE_Tnp_IS240 PF13610.1 gi|298674231|ref|YP_003725981.1| - 0.16 11.9 3.2 0.76 9.7 1.4 2.2 1 1 1 2 2 2 0 DDE domain DivIC PF04977.10 gi|298674231|ref|YP_003725981.1| - 0.3 10.5 9.3 0.17 11.3 4.3 2.2 1 1 1 2 2 2 0 Septum formation initiator Vac_Fusion PF02346.11 gi|298674231|ref|YP_003725981.1| - 0.47 9.9 2.9 58 3.2 0.1 3.6 2 1 2 4 4 4 0 Chordopoxvirus fusion protein V_ATPase_I PF01496.14 gi|298674231|ref|YP_003725981.1| - 0.87 7.3 6.0 0.92 7.2 4.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APG6 PF04111.7 gi|298674231|ref|YP_003725981.1| - 1.4 7.8 9.9 2.1 7.3 6.9 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 LMBR1 PF04791.11 gi|298674231|ref|YP_003725981.1| - 2.9 6.3 4.6 4.9 5.6 3.2 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3391 PF11871.3 gi|298674231|ref|YP_003725981.1| - 3.6 7.8 7.7 22 5.2 2.1 2.5 2 1 1 3 3 2 0 Domain of unknown function (DUF3391) Pox_A_type_inc PF04508.7 gi|298674231|ref|YP_003725981.1| - 4.2 7.4 7.2 6.4 6.8 1.4 2.8 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Tho2 PF11262.3 gi|298674231|ref|YP_003725981.1| - 4.2 6.3 11.6 5.1 6.0 6.2 2.1 2 1 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Ax_dynein_light PF10211.4 gi|298674231|ref|YP_003725981.1| - 4.9 6.9 13.6 0.2 11.4 5.2 2.0 3 0 0 3 3 2 0 Axonemal dynein light chain Upf2 PF04050.9 gi|298674231|ref|YP_003725981.1| - 5 6.8 21.1 0.13 12.0 7.8 2.2 2 0 0 2 2 2 0 Up-frameshift suppressor 2 Enkurin PF13864.1 gi|298674231|ref|YP_003725981.1| - 7.3 6.8 13.3 0.51 10.5 5.6 1.9 2 0 0 2 2 1 0 Calmodulin-binding HSP70 PF00012.15 gi|298674232|ref|YP_003725982.1| - 2.1e-246 818.6 22.8 3.2e-244 811.3 15.8 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|298674232|ref|YP_003725982.1| - 2.3e-20 72.4 2.3 2.3e-20 72.4 1.6 2.1 2 1 0 2 2 2 1 MreB/Mbl protein FtsA PF14450.1 gi|298674232|ref|YP_003725982.1| - 0.0089 15.8 13.7 0.29 10.9 0.0 5.0 3 2 1 4 4 4 2 Cell division protein FtsA FGGY_C PF02782.11 gi|298674232|ref|YP_003725982.1| - 0.011 15.4 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|298674232|ref|YP_003725982.1| - 0.035 13.9 0.0 0.15 11.9 0.0 2.1 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain Hydantoinase_A PF01968.13 gi|298674232|ref|YP_003725982.1| - 0.043 12.9 0.0 0.043 12.9 0.0 3.9 4 1 0 4 4 4 0 Hydantoinase/oxoprolinase DUF3347 PF11827.3 gi|298674232|ref|YP_003725982.1| - 0.32 10.9 20.1 5.8 6.8 10.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3347) DnaJ PF00226.26 gi|298674233|ref|YP_003725983.1| - 8.6e-31 105.4 4.2 2e-30 104.2 2.9 1.7 1 0 0 1 1 1 1 DnaJ domain CTDII PF01556.13 gi|298674233|ref|YP_003725983.1| - 1.4e-30 105.0 2.0 9.6e-23 79.8 0.4 3.2 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ_CXXCXGXG PF00684.14 gi|298674233|ref|YP_003725983.1| - 9.7e-14 51.1 16.7 1.7e-13 50.3 11.6 1.4 1 0 0 1 1 1 1 DnaJ central domain Cytochrom_CIII PF02085.11 gi|298674233|ref|YP_003725983.1| - 0.12 12.5 1.9 0.25 11.4 1.3 1.5 1 0 0 1 1 1 0 Class III cytochrome C family HypA PF01155.14 gi|298674233|ref|YP_003725983.1| - 3.9 7.1 10.6 0.61 9.7 1.2 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Cytochrome_C7 PF14522.1 gi|298674233|ref|YP_003725983.1| - 8.1 6.1 8.5 2.8 7.6 2.7 2.1 1 1 1 2 2 2 0 Cytochrome c7 TrkA_N PF02254.13 gi|298674234|ref|YP_003725984.1| - 2.3e-50 169.4 3.6 2.6e-24 85.4 0.0 2.3 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|298674234|ref|YP_003725984.1| - 1.5e-31 107.8 0.3 2.3e-14 52.7 0.0 2.8 2 0 0 2 2 2 2 TrkA-C domain Shikimate_DH PF01488.15 gi|298674234|ref|YP_003725984.1| - 3.5e-11 43.3 2.8 1.2e-05 25.4 0.3 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|298674234|ref|YP_003725984.1| - 2.9e-10 40.3 3.7 0.0003 20.9 0.2 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|298674234|ref|YP_003725984.1| - 2e-09 37.3 0.3 0.0009 19.0 0.1 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|298674234|ref|YP_003725984.1| - 1.3e-08 35.0 1.0 0.0089 16.4 0.0 3.5 3 1 1 4 4 3 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|298674234|ref|YP_003725984.1| - 4.1e-08 33.5 2.6 0.0011 19.3 0.1 3.2 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|298674234|ref|YP_003725984.1| - 1.5e-07 31.6 1.2 0.015 15.3 0.0 2.2 2 0 0 2 2 2 2 NADH(P)-binding Pyr_redox_2 PF07992.9 gi|298674234|ref|YP_003725984.1| - 3.3e-07 30.3 0.9 0.0072 16.2 0.1 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|298674234|ref|YP_003725984.1| - 4.9e-07 29.5 0.4 0.024 14.2 0.0 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|298674234|ref|YP_003725984.1| - 1.3e-06 27.7 2.4 0.00022 20.3 0.4 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase FAD_binding_3 PF01494.14 gi|298674234|ref|YP_003725984.1| - 3.2e-06 26.4 0.0 0.012 14.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|298674234|ref|YP_003725984.1| - 7.7e-06 25.4 5.0 0.0042 16.4 0.1 3.0 2 1 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|298674234|ref|YP_003725984.1| - 1.6e-05 25.2 0.1 0.0068 16.7 0.0 2.8 2 1 0 2 2 2 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|298674234|ref|YP_003725984.1| - 4.5e-05 23.3 1.1 0.14 11.9 0.0 3.1 2 1 1 3 3 3 2 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|298674234|ref|YP_003725984.1| - 6.6e-05 22.3 0.1 0.0017 17.7 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|298674234|ref|YP_003725984.1| - 0.00012 21.6 0.1 0.0076 15.8 0.0 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|298674234|ref|YP_003725984.1| - 0.00026 21.0 0.7 0.49 10.5 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain HI0933_like PF03486.9 gi|298674234|ref|YP_003725984.1| - 0.00036 19.1 0.5 0.035 12.5 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|298674234|ref|YP_003725984.1| - 0.00047 19.3 1.1 0.21 10.7 0.1 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_31 PF13847.1 gi|298674234|ref|YP_003725984.1| - 0.0007 19.2 0.3 0.0067 16.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain ThiF PF00899.16 gi|298674234|ref|YP_003725984.1| - 0.00071 19.3 0.1 1.9 8.3 0.0 3.4 3 0 0 3 3 3 1 ThiF family DAO PF01266.19 gi|298674234|ref|YP_003725984.1| - 0.0028 16.6 0.1 1.3 7.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|298674234|ref|YP_003725984.1| - 0.014 15.4 0.4 4 7.4 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|298674234|ref|YP_003725984.1| - 0.016 15.0 5.3 0.027 14.3 0.4 2.7 2 1 1 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lycopene_cycl PF05834.7 gi|298674234|ref|YP_003725984.1| - 0.018 13.9 0.1 1.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Spermine_synth PF01564.12 gi|298674234|ref|YP_003725984.1| - 0.035 13.0 2.0 0.058 12.3 0.5 1.9 2 0 0 2 2 2 0 Spermine/spermidine synthase adh_short PF00106.20 gi|298674234|ref|YP_003725984.1| - 0.079 12.8 0.1 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_8 PF13450.1 gi|298674234|ref|YP_003725984.1| - 0.14 12.1 0.3 2.4 8.2 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Reovirus_L2 PF06016.6 gi|298674234|ref|YP_003725984.1| - 0.16 8.8 0.0 0.22 8.4 0.0 1.1 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) GFO_IDH_MocA PF01408.17 gi|298674234|ref|YP_003725984.1| - 0.16 12.4 0.8 1.7 9.2 0.0 2.7 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ThiS PF02597.15 gi|298674234|ref|YP_003725984.1| - 0.48 10.8 3.3 6 7.3 0.0 3.7 4 1 0 4 4 4 0 ThiS family TrkH PF02386.11 gi|298674235|ref|YP_003725985.1| - 9.1e-57 192.2 13.8 9.1e-57 192.2 9.6 2.5 2 1 0 2 2 2 2 Cation transport protein OST3_OST6 PF04756.8 gi|298674235|ref|YP_003725985.1| - 0.15 11.5 0.1 0.15 11.5 0.0 3.3 3 1 0 3 3 3 0 OST3 / OST6 family FAD_binding_3 PF01494.14 gi|298674236|ref|YP_003725986.1| - 1.3e-13 50.8 0.5 1.3e-09 37.6 0.1 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|298674236|ref|YP_003725986.1| - 9.7e-11 41.1 0.8 8.1e-07 28.2 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|298674236|ref|YP_003725986.1| - 4.2e-09 35.9 1.1 1.4e-08 34.3 0.8 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|298674236|ref|YP_003725986.1| - 2.8e-08 32.6 0.3 1e-07 30.8 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.19 gi|298674236|ref|YP_003725986.1| - 3.3e-07 29.5 0.9 0.00024 20.1 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|298674236|ref|YP_003725986.1| - 6.6e-07 29.2 0.0 1.7e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|298674236|ref|YP_003725986.1| - 2.4e-06 26.7 0.0 0.0017 17.3 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|298674236|ref|YP_003725986.1| - 4.5e-06 26.6 6.6 1.9e-05 24.6 4.5 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|298674236|ref|YP_003725986.1| - 1e-05 24.7 0.1 2.3e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|298674236|ref|YP_003725986.1| - 1.1e-05 24.4 1.1 2.3e-05 23.4 0.8 1.6 1 1 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|298674236|ref|YP_003725986.1| - 0.0001 21.1 0.3 0.1 11.1 0.1 2.5 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.1 gi|298674236|ref|YP_003725986.1| - 0.022 14.7 0.3 0.038 14.0 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|298674236|ref|YP_003725986.1| - 0.025 12.9 0.0 0.043 12.1 0.0 1.3 1 0 0 1 1 1 0 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|298674236|ref|YP_003725986.1| - 0.049 13.2 0.1 0.11 12.1 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|298674236|ref|YP_003725986.1| - 0.13 12.6 0.3 0.13 12.6 0.2 2.7 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|298674236|ref|YP_003725986.1| - 0.18 10.5 1.0 0.37 9.5 0.1 1.8 1 1 1 2 2 2 0 Squalene epoxidase Fer4 PF00037.22 gi|298674237|ref|YP_003725987.1| - 7.4e-16 57.0 17.6 1.7e-08 33.6 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674237|ref|YP_003725987.1| - 5.7e-12 44.9 13.2 3.1e-06 26.8 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298674237|ref|YP_003725987.1| - 9.1e-11 41.8 9.7 9.5e-06 25.7 1.1 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674237|ref|YP_003725987.1| - 3.7e-10 39.4 23.2 5.5e-07 29.2 8.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674237|ref|YP_003725987.1| - 3.9e-10 39.9 12.4 1.2e-09 38.3 8.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674237|ref|YP_003725987.1| - 6.9e-10 39.5 9.1 8.9e-05 23.1 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|298674237|ref|YP_003725987.1| - 3.5e-09 36.3 10.1 9.1e-09 35.0 7.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674237|ref|YP_003725987.1| - 1.8e-08 33.8 13.1 9.1e-05 22.1 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298674237|ref|YP_003725987.1| - 9e-07 28.7 12.9 0.00023 21.2 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298674237|ref|YP_003725987.1| - 2.9e-06 27.2 12.0 7.3e-05 22.7 8.4 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298674237|ref|YP_003725987.1| - 7.3e-06 26.1 22.1 0.001 19.4 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674237|ref|YP_003725987.1| - 3.5e-05 24.1 12.7 0.002 18.5 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298674237|ref|YP_003725987.1| - 4.4e-05 23.9 12.2 0.02 15.4 0.5 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|298674237|ref|YP_003725987.1| - 0.00011 22.4 12.5 0.013 15.8 1.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298674237|ref|YP_003725987.1| - 0.00021 21.6 12.0 0.065 13.6 0.6 2.3 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|298674237|ref|YP_003725987.1| - 0.35 10.7 5.8 1.4 8.8 0.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain zf-Paramyx-P PF13008.2 gi|298674237|ref|YP_003725987.1| - 0.53 9.5 8.0 1.8 7.8 0.5 2.1 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Fer4_19 PF06902.6 gi|298674237|ref|YP_003725987.1| - 1 9.2 8.5 4.9 7.0 0.5 3.3 2 2 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Desulfoferrod_N PF06397.7 gi|298674237|ref|YP_003725987.1| - 1.5 8.2 17.2 0.055 12.8 3.8 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|298674237|ref|YP_003725987.1| - 2.2 7.8 7.8 5 6.7 0.1 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain CofC PF01983.11 gi|298674238|ref|YP_003725988.1| - 2.8e-52 176.8 3.1 3.3e-52 176.5 2.2 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|298674238|ref|YP_003725988.1| - 2.8e-06 27.5 0.0 3.5e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|298674238|ref|YP_003725988.1| - 0.017 14.6 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) Radical_SAM PF04055.16 gi|298674239|ref|YP_003725989.1| - 1.6e-16 60.9 0.2 2.4e-16 60.3 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298674239|ref|YP_003725989.1| - 0.011 15.8 0.2 0.024 14.6 0.2 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF2294 PF10057.4 gi|298674239|ref|YP_003725989.1| - 0.02 14.5 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) Radical_SAM PF04055.16 gi|298674240|ref|YP_003725990.1| - 9.6e-16 58.3 0.1 2.3e-15 57.1 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily NAD_binding_8 PF13450.1 gi|298674241|ref|YP_003725991.1| - 2e-13 50.1 0.1 5.1e-13 48.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|298674241|ref|YP_003725991.1| - 2e-10 40.3 0.0 3.3e-10 39.6 0.0 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|298674241|ref|YP_003725991.1| - 4.2e-10 39.0 0.0 0.00024 20.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|298674241|ref|YP_003725991.1| - 3.3e-07 29.5 0.0 0.00024 20.1 0.0 2.8 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|298674241|ref|YP_003725991.1| - 4.6e-07 29.9 0.0 0.0002 21.3 0.0 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|298674241|ref|YP_003725991.1| - 2.1e-05 24.8 1.4 0.048 14.0 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|298674241|ref|YP_003725991.1| - 0.00051 18.6 0.0 0.072 11.5 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|298674241|ref|YP_003725991.1| - 0.0076 15.3 0.3 0.088 11.8 0.0 2.4 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|298674241|ref|YP_003725991.1| - 0.048 13.7 0.1 0.64 10.0 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|298674241|ref|YP_003725991.1| - 0.065 12.0 0.6 0.34 9.7 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|298674241|ref|YP_003725991.1| - 0.085 11.8 0.1 0.18 10.7 0.1 1.5 2 0 0 2 2 2 0 FAD binding domain Fer4 PF00037.22 gi|298674242|ref|YP_003725992.1| - 1.7e-12 46.3 13.8 2.4e-07 30.0 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674242|ref|YP_003725992.1| - 1.2e-08 34.6 13.6 1.9e-08 34.0 9.4 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674242|ref|YP_003725992.1| - 4.5e-07 30.1 14.6 4.7e-06 26.8 10.4 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674242|ref|YP_003725992.1| - 1.2e-06 28.3 15.4 0.00088 19.4 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674242|ref|YP_003725992.1| - 2.5e-06 27.0 14.8 0.00068 19.3 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298674242|ref|YP_003725992.1| - 2.6e-06 28.0 12.7 0.0059 17.3 1.7 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|298674242|ref|YP_003725992.1| - 4.4e-06 26.8 14.3 0.0022 18.2 2.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674242|ref|YP_003725992.1| - 7.3e-06 25.6 13.0 0.0068 16.2 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674242|ref|YP_003725992.1| - 1.6e-05 24.6 28.8 0.00025 20.7 11.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298674242|ref|YP_003725992.1| - 0.00012 21.9 14.1 0.00067 19.6 9.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674242|ref|YP_003725992.1| - 0.00037 20.7 15.3 0.02 15.2 2.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674242|ref|YP_003725992.1| - 0.00058 20.2 14.9 0.054 13.9 1.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298674242|ref|YP_003725992.1| - 0.00074 19.9 16.5 0.11 13.1 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674242|ref|YP_003725992.1| - 0.022 15.3 3.7 0.022 15.3 2.6 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298674242|ref|YP_003725992.1| - 0.028 14.8 13.5 0.5 10.7 3.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-CXXC PF02008.15 gi|298674242|ref|YP_003725992.1| - 1.9 8.3 11.4 2.4 8.0 1.1 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain C1_1 PF00130.17 gi|298674242|ref|YP_003725992.1| - 5.5 6.7 11.4 8.6 6.1 7.9 1.5 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF22 PF01629.11 gi|298674243|ref|YP_003725993.1| - 3.1e-29 100.7 1.0 3.7e-29 100.4 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 Arc_trans_TRASH PF08394.5 gi|298674244|ref|YP_003725994.1| - 0.025 14.7 7.5 0.16 12.1 2.3 2.8 2 0 0 2 2 2 0 Archaeal TRASH domain NT5C PF06941.7 gi|298674244|ref|YP_003725994.1| - 0.061 12.8 0.1 0.088 12.3 0.1 1.3 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DUF4428 PF14471.1 gi|298674244|ref|YP_003725994.1| - 0.11 12.2 6.8 0.41 10.4 1.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DUF4182 PF13790.1 gi|298674244|ref|YP_003725994.1| - 0.22 11.3 0.0 0.22 11.3 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4182) DZR PF12773.2 gi|298674244|ref|YP_003725994.1| - 3.2 7.6 9.1 20 5.1 0.2 2.7 2 1 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|298674244|ref|YP_003725994.1| - 7.6 5.9 15.9 21 4.5 4.3 3.4 2 1 0 2 2 2 0 TFIIB zinc-binding Oxidored_q4 PF00507.14 gi|298674245|ref|YP_003725995.1| - 2.6e-31 107.4 1.9 3.5e-31 107.0 1.1 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF2206 PF09971.4 gi|298674245|ref|YP_003725995.1| - 0.14 10.9 5.6 0.2 10.4 0.5 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2206) Oxidored_q6 PF01058.17 gi|298674246|ref|YP_003725996.1| - 4.7e-24 84.4 0.1 6.8e-24 83.9 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|298674246|ref|YP_003725996.1| - 0.039 12.8 0.0 0.058 12.3 0.0 1.3 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Complex1_30kDa PF00329.14 gi|298674247|ref|YP_003725997.1| - 6.9e-33 112.9 0.2 1.5e-32 111.8 0.0 1.6 2 1 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RNase_H_2 PF13482.1 gi|298674247|ref|YP_003725997.1| - 0.053 13.3 0.2 0.071 12.9 0.1 1.1 1 0 0 1 1 1 0 RNase_H superfamily HTH_27 PF13463.1 gi|298674247|ref|YP_003725997.1| - 0.15 12.4 0.0 1.3 9.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain Complex1_49kDa PF00346.14 gi|298674248|ref|YP_003725998.1| - 2.4e-72 243.2 0.0 1.6e-69 233.9 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|298674248|ref|YP_003725998.1| - 4.8e-06 25.6 0.0 1.2e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|298674249|ref|YP_003725999.1| - 7e-90 301.2 19.9 8.8e-90 300.9 13.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|298674250|ref|YP_003726000.1| - 2.7e-15 55.2 16.1 3.3e-09 35.9 2.8 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674250|ref|YP_003726000.1| - 2.2e-11 43.3 17.1 9.6e-09 34.9 7.2 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674250|ref|YP_003726000.1| - 2.4e-11 43.8 8.4 2.4e-11 43.8 5.9 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674250|ref|YP_003726000.1| - 7.6e-11 42.1 21.6 7.6e-09 35.7 6.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674250|ref|YP_003726000.1| - 1.5e-10 41.6 4.5 0.00016 22.3 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|298674250|ref|YP_003726000.1| - 6.9e-09 35.6 7.1 1.2e-08 34.8 4.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674250|ref|YP_003726000.1| - 2.6e-08 33.2 14.9 3.4e-05 23.5 1.6 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674250|ref|YP_003726000.1| - 4.3e-08 32.8 9.3 4.3e-08 32.8 6.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674250|ref|YP_003726000.1| - 2.8e-06 27.5 15.7 0.00014 22.1 6.5 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674250|ref|YP_003726000.1| - 5.1e-06 26.1 16.2 1e-05 25.1 2.3 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298674250|ref|YP_003726000.1| - 2.5e-05 24.2 12.5 0.0013 18.9 1.4 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674250|ref|YP_003726000.1| - 8.1e-05 23.1 9.2 0.00056 20.4 0.4 2.6 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298674250|ref|YP_003726000.1| - 0.00022 21.5 20.1 0.018 15.5 2.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674250|ref|YP_003726000.1| - 0.00041 20.7 15.0 0.014 15.8 2.3 2.5 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298674250|ref|YP_003726000.1| - 0.0024 18.1 12.2 0.0033 17.7 1.9 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|298674250|ref|YP_003726000.1| - 0.039 13.8 3.4 0.36 10.7 2.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|298674251|ref|YP_003726001.1| - 2.6e-16 59.7 7.6 4.1e-16 59.0 5.3 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|298674251|ref|YP_003726001.1| - 0.055 13.4 15.1 0.037 14.0 8.7 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF2109 PF09882.4 gi|298674251|ref|YP_003726001.1| - 0.7 9.8 6.8 1.1 9.1 4.0 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2109) DUF3792 PF12670.2 gi|298674252|ref|YP_003726002.1| - 0.018 14.8 0.3 0.018 14.8 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) DUF4064 PF13273.1 gi|298674252|ref|YP_003726002.1| - 0.023 14.7 1.5 0.028 14.5 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) Oxidored_q3 PF00499.15 gi|298674252|ref|YP_003726002.1| - 0.032 14.0 10.3 0.4 10.4 6.6 1.9 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF3366 PF11846.3 gi|298674252|ref|YP_003726002.1| - 0.035 13.9 0.0 0.043 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) DUF3566 PF12089.3 gi|298674252|ref|YP_003726002.1| - 0.13 12.2 2.5 0.15 12.0 1.7 1.0 1 0 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) EpuA PF11772.3 gi|298674252|ref|YP_003726002.1| - 0.37 10.2 9.2 0.12 11.8 2.9 2.1 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta DUF4605 PF15378.1 gi|298674252|ref|YP_003726002.1| - 2.4 7.9 8.1 0.35 10.5 1.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4605) Oxidored_q2 PF00420.19 gi|298674253|ref|YP_003726003.1| - 1.3e-24 85.5 5.9 1.5e-24 85.3 4.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BMC PF00936.14 gi|298674253|ref|YP_003726003.1| - 0.073 12.7 0.2 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 BMC domain TMEM138 PF14935.1 gi|298674253|ref|YP_003726003.1| - 0.13 12.6 0.3 0.13 12.5 0.2 1.1 1 0 0 1 1 1 0 Transmembrane protein 138 Oxidored_q1 PF00361.15 gi|298674254|ref|YP_003726004.1| - 1.5e-73 247.4 22.8 1.5e-73 247.4 15.8 2.6 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|298674254|ref|YP_003726004.1| - 3.5e-13 48.9 0.3 3.5e-13 48.9 0.2 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|298674254|ref|YP_003726004.1| - 0.00018 21.0 1.3 0.0004 19.9 0.9 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q1 PF00361.15 gi|298674255|ref|YP_003726005.1| - 7.5e-59 199.1 28.6 7.5e-59 199.1 19.8 2.6 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|298674255|ref|YP_003726005.1| - 0.0071 16.2 6.3 0.0071 16.2 4.4 5.4 4 3 1 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus ERGIC_N PF13850.1 gi|298674255|ref|YP_003726005.1| - 0.11 12.5 1.8 0.18 11.7 0.2 2.2 2 0 0 2 2 2 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Oxidored_q1 PF00361.15 gi|298674256|ref|YP_003726006.1| - 1e-65 221.6 28.9 1e-65 221.6 20.0 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|298674256|ref|YP_003726006.1| - 0.00028 20.3 1.3 0.00028 20.3 0.9 3.0 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3318 PF11780.3 gi|298674256|ref|YP_003726006.1| - 8.8 5.8 11.6 0.22 11.0 0.7 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF3318) FpoO PF10621.4 gi|298674257|ref|YP_003726007.1| - 3.2e-39 133.6 3.4 3.4e-39 133.5 2.3 1.0 1 0 0 1 1 1 1 F420H2 dehydrogenase subunit FpoO DZR PF12773.2 gi|298674257|ref|YP_003726007.1| - 0.02 14.6 8.6 0.59 10.0 2.7 2.5 1 1 1 2 2 2 0 Double zinc ribbon E6 PF00518.12 gi|298674257|ref|YP_003726007.1| - 0.44 10.9 5.8 0.93 9.8 0.1 2.4 1 1 1 2 2 2 0 Early Protein (E6) DUF4428 PF14471.1 gi|298674257|ref|YP_003726007.1| - 0.51 10.1 11.1 0.12 12.1 0.7 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) Fer4_8 PF13183.1 gi|298674257|ref|YP_003726007.1| - 0.88 9.6 9.7 1.3 9.1 0.5 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain zf-P11 PF03854.9 gi|298674257|ref|YP_003726007.1| - 1.9 8.0 0.0 1.9 8.0 0.0 3.7 4 0 0 4 4 4 0 P-11 zinc finger C1_1 PF00130.17 gi|298674257|ref|YP_003726007.1| - 2.8 7.7 10.9 0.22 11.2 1.2 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-AD PF07776.10 gi|298674257|ref|YP_003726007.1| - 3 7.9 10.1 10 6.1 0.1 2.6 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) Fer4_9 PF13187.1 gi|298674257|ref|YP_003726007.1| - 3.1 8.1 12.9 1e+03 0.0 9.0 2.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain UPF0547 PF10571.4 gi|298674257|ref|YP_003726007.1| - 4.1 7.1 0.0 4.1 7.1 0.0 3.5 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Gate PF07670.9 gi|298674258|ref|YP_003726008.1| - 0.00028 20.7 23.6 0.002 18.0 3.0 3.0 2 2 0 2 2 2 2 Nucleoside recognition FBPase_3 PF01950.11 gi|298674259|ref|YP_003726009.1| - 4.9e-178 591.6 0.0 5.5e-178 591.5 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Trm112p PF03966.11 gi|298674260|ref|YP_003726010.1| - 7.2e-12 45.4 1.3 1.6e-11 44.3 0.9 1.5 1 1 0 1 1 1 1 Trm112p-like protein Cys_rich_KTR PF14205.1 gi|298674260|ref|YP_003726010.1| - 0.0012 18.2 0.1 0.0017 17.7 0.1 1.2 1 0 0 1 1 1 1 Cysteine-rich KTR Prim_Zn_Ribbon PF08273.7 gi|298674260|ref|YP_003726010.1| - 0.0029 17.6 0.2 0.0045 17.0 0.1 1.4 1 1 0 1 1 1 1 Zinc-binding domain of primase-helicase Elf1 PF05129.8 gi|298674260|ref|YP_003726010.1| - 0.0034 17.0 0.0 0.0035 17.0 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|298674260|ref|YP_003726010.1| - 0.012 15.9 0.1 0.015 15.5 0.1 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar CK_II_beta PF01214.13 gi|298674260|ref|YP_003726010.1| - 0.013 15.0 0.2 0.014 14.9 0.1 1.0 1 0 0 1 1 1 0 Casein kinase II regulatory subunit TF_Zn_Ribbon PF08271.7 gi|298674260|ref|YP_003726010.1| - 0.018 14.3 1.9 0.027 13.7 1.3 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-SNAP50_C PF12251.3 gi|298674260|ref|YP_003726010.1| - 0.019 14.3 0.1 0.02 14.2 0.1 1.0 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal RRN7 PF11781.3 gi|298674260|ref|YP_003726010.1| - 0.033 13.6 0.2 1.7 8.2 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_3 PF14369.1 gi|298674260|ref|YP_003726010.1| - 0.049 13.6 0.1 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger zf-UDP PF14569.1 gi|298674260|ref|YP_003726010.1| - 0.053 13.2 0.5 0.14 11.8 0.3 1.7 1 1 0 1 1 1 0 Zinc-binding RING-finger zf-TFIIB PF13453.1 gi|298674260|ref|YP_003726010.1| - 0.082 12.1 1.8 0.2 10.8 1.2 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-DNA_Pol PF08996.5 gi|298674260|ref|YP_003726010.1| - 0.089 12.1 0.0 0.089 12.1 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger TctB PF07331.6 gi|298674261|ref|YP_003726011.1| - 0.17 11.5 5.1 0.25 10.9 3.6 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family CTP_synth_N PF06418.9 gi|298674262|ref|YP_003726012.1| - 1.1e-126 421.5 0.3 1.6e-126 421.0 0.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|298674262|ref|YP_003726012.1| - 8.6e-51 172.1 0.0 1.5e-50 171.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CbiA PF01656.18 gi|298674262|ref|YP_003726012.1| - 6e-09 35.5 0.1 9.9e-09 34.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_C26 PF07722.8 gi|298674262|ref|YP_003726012.1| - 3e-07 30.1 0.0 9.3e-07 28.5 0.0 1.8 1 1 1 2 2 2 1 Peptidase C26 ArgK PF03308.11 gi|298674262|ref|YP_003726012.1| - 0.084 11.6 0.7 0.28 9.9 0.2 1.9 2 0 0 2 2 2 0 ArgK protein TruD PF01142.13 gi|298674263|ref|YP_003726013.1| - 2.6e-111 371.9 0.0 3e-111 371.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|298674264|ref|YP_003726014.1| - 3.7e-41 139.4 0.2 4.1e-41 139.3 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF4288 PF14119.1 gi|298674264|ref|YP_003726014.1| - 0.0079 16.3 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4288) HTH_19 PF12844.2 gi|298674264|ref|YP_003726014.1| - 0.063 13.3 0.1 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Peptidase_M22 PF00814.20 gi|298674264|ref|YP_003726014.1| - 0.099 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycoprotease family TolB_N PF04052.8 gi|298674264|ref|YP_003726014.1| - 0.12 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 TolB amino-terminal domain RimK PF08443.6 gi|298674265|ref|YP_003726015.1| - 1e-38 132.7 0.0 1.4e-38 132.2 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|298674265|ref|YP_003726015.1| - 1.1e-17 63.7 0.1 1.9e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298674265|ref|YP_003726015.1| - 1.3e-12 47.1 0.0 1.7e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|298674265|ref|YP_003726015.1| - 9.1e-11 41.8 0.0 1.3e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|298674265|ref|YP_003726015.1| - 3.7e-05 22.6 0.0 0.00039 19.3 0.0 2.2 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATP-grasp_3 PF02655.9 gi|298674265|ref|YP_003726015.1| - 0.00028 20.7 0.2 0.0015 18.4 0.1 2.1 1 1 0 1 1 1 1 ATP-grasp domain CP_ATPgrasp_1 PF04174.8 gi|298674265|ref|YP_003726015.1| - 0.021 13.4 0.0 1.7 7.1 0.0 2.2 2 0 0 2 2 2 0 A circularly permuted ATPgrasp TTL PF03133.10 gi|298674265|ref|YP_003726015.1| - 0.099 11.5 0.0 5.6 5.8 0.0 2.4 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family DUF3566 PF12089.3 gi|298674266|ref|YP_003726016.1| - 0.001 19.0 2.7 0.001 19.0 1.9 2.1 1 1 1 2 2 2 1 Transmembrane domain of unknown function (DUF3566) Yip1 PF04893.12 gi|298674266|ref|YP_003726016.1| - 0.26 10.7 14.0 0.37 10.2 9.7 1.2 1 0 0 1 1 1 0 Yip1 domain DUF1700 PF08006.6 gi|298674266|ref|YP_003726016.1| - 0.45 9.8 12.6 0.49 9.6 8.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF2953 PF11167.3 gi|298674266|ref|YP_003726016.1| - 3.7 7.5 10.3 1.4 8.8 1.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2953) ABC2_membrane_2 PF12679.2 gi|298674266|ref|YP_003726016.1| - 4.8 5.9 12.6 5.9 5.6 8.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4064 PF13273.1 gi|298674266|ref|YP_003726016.1| - 7 6.8 19.4 22 5.2 13.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF434 PF04256.7 gi|298674268|ref|YP_003726018.1| - 4e-20 70.9 0.1 8.6e-20 69.8 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Fcf1 PF04900.7 gi|298674268|ref|YP_003726018.1| - 0.097 12.7 0.1 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Fcf1 HR1 PF02185.11 gi|298674268|ref|YP_003726018.1| - 0.15 11.8 0.9 0.97 9.2 0.1 2.2 2 0 0 2 2 2 0 Hr1 repeat OCD_Mu_crystall PF02423.10 gi|298674269|ref|YP_003726019.1| - 2.5e-101 338.5 0.0 2.8e-101 338.4 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|298674269|ref|YP_003726019.1| - 0.0046 17.3 0.0 0.012 15.9 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|298674269|ref|YP_003726019.1| - 0.0076 16.5 0.0 0.018 15.3 0.0 1.7 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain BBS2_N PF14781.1 gi|298674269|ref|YP_003726019.1| - 0.056 13.0 0.1 0.13 11.9 0.0 1.6 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, N-terminal zf-tcix PF14952.1 gi|298674270|ref|YP_003726020.1| - 3.1e-05 23.2 1.1 4.1e-05 22.8 0.8 1.2 1 0 0 1 1 1 1 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.4 gi|298674270|ref|YP_003726020.1| - 0.023 14.3 0.2 0.2 11.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Tnp_zf-ribbon_2 PF13842.1 gi|298674270|ref|YP_003726020.1| - 0.058 13.8 5.6 0.079 13.3 3.9 1.2 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF35_N PF12172.3 gi|298674270|ref|YP_003726020.1| - 0.092 12.6 0.3 0.18 11.7 0.2 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) BEN PF10523.4 gi|298674270|ref|YP_003726020.1| - 0.1 12.6 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 BEN domain OrfB_Zn_ribbon PF07282.6 gi|298674270|ref|YP_003726020.1| - 0.11 12.2 1.9 0.13 11.9 1.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|298674270|ref|YP_003726020.1| - 0.11 11.6 1.9 0.18 11.0 1.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|298674270|ref|YP_003726020.1| - 0.12 12.0 1.5 1 9.0 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_ligase_ZBD PF03119.11 gi|298674270|ref|YP_003726020.1| - 0.13 11.9 1.4 11 5.7 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3797 PF12677.2 gi|298674270|ref|YP_003726020.1| - 0.33 10.5 2.0 0.82 9.3 1.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) zf-RING-like PF08746.6 gi|298674270|ref|YP_003726020.1| - 0.51 10.3 2.9 11 6.1 0.4 2.1 2 0 0 2 2 2 0 RING-like domain zf-NADH-PPase PF09297.6 gi|298674270|ref|YP_003726020.1| - 0.91 9.0 3.4 2.1 7.9 2.4 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain PBP PF01161.15 gi|298674271|ref|YP_003726021.1| - 2.5e-37 127.9 0.0 3.1e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein MS_channel PF00924.13 gi|298674272|ref|YP_003726022.1| - 1.9e-53 180.9 9.5 1.9e-53 180.9 6.6 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel MscS_TM PF12794.2 gi|298674272|ref|YP_003726022.1| - 0.69 8.4 6.1 0.99 7.9 4.3 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF432 PF04254.8 gi|298674273|ref|YP_003726023.1| - 6e-39 132.7 0.2 1.1e-38 131.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Usp PF00582.21 gi|298674274|ref|YP_003726024.1| - 4.5e-38 130.5 0.0 5e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|298674274|ref|YP_003726024.1| - 0.016 15.7 0.0 0.025 15.1 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase VWA_2 PF13519.1 gi|298674274|ref|YP_003726024.1| - 0.051 13.6 0.1 0.079 13.0 0.1 1.5 1 1 0 1 1 1 0 von Willebrand factor type A domain Usp PF00582.21 gi|298674275|ref|YP_003726025.1| - 7.9e-37 126.5 0.0 8.8e-37 126.4 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|298674275|ref|YP_003726025.1| - 0.00064 20.2 0.8 0.00073 20.0 0.4 1.3 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase VWA_2 PF13519.1 gi|298674275|ref|YP_003726025.1| - 0.025 14.7 0.1 0.032 14.3 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain TP_methylase PF00590.15 gi|298674276|ref|YP_003726026.1| - 5e-55 186.4 0.0 5.7e-55 186.2 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|298674276|ref|YP_003726026.1| - 0.13 12.4 0.2 0.5 10.5 0.1 2.1 1 1 0 1 1 1 0 Radical SAM superfamily HEM4 PF02602.10 gi|298674277|ref|YP_003726027.1| - 6.8e-41 140.0 0.0 8.2e-41 139.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD Nitro_FeMo-Co PF02579.12 gi|298674277|ref|YP_003726027.1| - 0.12 12.4 0.0 6.2 6.9 0.0 2.6 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Radical_SAM PF04055.16 gi|298674278|ref|YP_003726028.1| - 1.1e-22 80.9 0.0 5.1e-22 78.8 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298674278|ref|YP_003726028.1| - 6.2e-14 52.3 0.0 1.2e-13 51.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298674278|ref|YP_003726028.1| - 2.1e-11 43.8 0.0 4.8e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain GHL6 PF14871.1 gi|298674278|ref|YP_003726028.1| - 0.086 12.8 0.0 12 5.9 0.0 2.5 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 Desulfoferrodox PF01880.13 gi|298674279|ref|YP_003726029.1| - 3.3e-23 81.7 0.4 4.1e-23 81.4 0.3 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Ferritin PF00210.19 gi|298674280|ref|YP_003726030.1| - 2.8e-41 140.5 4.7 3.4e-41 140.3 3.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain Apc5 PF12862.2 gi|298674280|ref|YP_003726030.1| - 0.00059 19.6 0.2 0.0012 18.6 0.1 1.5 1 0 0 1 1 1 1 Anaphase-promoting complex subunit 5 TnpB_IS66 PF05717.8 gi|298674280|ref|YP_003726030.1| - 0.086 12.2 0.0 1.2 8.6 0.0 2.3 2 1 0 2 2 2 0 IS66 Orf2 like protein tRNA-synt_1 PF00133.17 gi|298674281|ref|YP_003726031.1| - 3.3e-133 444.8 2.4 2.1e-132 442.2 1.7 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|298674281|ref|YP_003726031.1| - 5.3e-39 133.4 0.4 1e-38 132.4 0.3 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|298674281|ref|YP_003726031.1| - 6.5e-25 87.6 1.1 1.7e-13 50.0 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|298674281|ref|YP_003726031.1| - 2.7e-07 30.0 0.0 1.3e-06 27.7 0.0 2.0 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|298674281|ref|YP_003726031.1| - 0.00012 21.3 0.0 0.51 9.4 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|298674281|ref|YP_003726031.1| - 0.02 13.7 0.0 3.7 6.2 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (R) tRNA-synt_1b PF00579.20 gi|298674281|ref|YP_003726031.1| - 0.022 13.9 0.2 0.53 9.3 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (W and Y) PMBR PF09373.5 gi|298674281|ref|YP_003726031.1| - 1.3 9.1 3.3 5.7 7.0 0.0 3.4 4 0 0 4 4 4 0 Pseudomurein-binding repeat tRNA-synt_2d PF01409.15 gi|298674282|ref|YP_003726032.1| - 5.5e-14 51.9 0.0 1e-12 47.8 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|298674282|ref|YP_003726032.1| - 2.6e-12 46.6 0.0 6.9e-12 45.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|298674282|ref|YP_003726032.1| - 2.6e-11 42.8 3.3 3.4e-10 39.2 0.0 3.1 2 1 1 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_His PF13393.1 gi|298674282|ref|YP_003726032.1| - 0.038 13.0 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Zn_ribbon_recom PF13408.1 gi|298674282|ref|YP_003726032.1| - 0.2 11.9 4.4 0.26 11.6 1.0 2.5 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain URO-D PF01208.12 gi|298674283|ref|YP_003726033.1| - 1.6e-85 287.1 0.0 1.8e-85 286.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF1032 PF06278.6 gi|298674283|ref|YP_003726033.1| - 0.12 10.7 0.0 0.18 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) 2-Hacid_dh_C PF02826.14 gi|298674284|ref|YP_003726034.1| - 8e-63 210.7 0.8 3e-62 208.9 0.0 2.3 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|298674284|ref|YP_003726034.1| - 9.5e-42 141.6 1.7 1.6e-41 140.8 0.5 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|298674284|ref|YP_003726034.1| - 9.5e-05 22.2 1.3 0.00062 19.6 0.0 2.8 3 1 1 4 4 4 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|298674284|ref|YP_003726034.1| - 0.00024 20.5 0.1 0.0057 16.0 0.0 2.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ACT PF01842.20 gi|298674284|ref|YP_003726034.1| - 0.002 17.5 0.3 0.014 14.8 0.0 2.5 2 0 0 2 2 2 1 ACT domain F420_oxidored PF03807.12 gi|298674284|ref|YP_003726034.1| - 0.0048 17.3 0.2 0.2 12.0 0.0 3.3 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_C PF03720.10 gi|298674284|ref|YP_003726034.1| - 0.018 15.1 0.1 0.18 11.9 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF2240 PF09999.4 gi|298674286|ref|YP_003726036.1| - 5.4e-43 145.8 0.6 6.2e-43 145.6 0.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) RYDR_ITPR PF01365.16 gi|298674286|ref|YP_003726036.1| - 0.027 13.6 0.1 0.036 13.2 0.1 1.2 1 0 0 1 1 1 0 RIH domain Ribosomal_L18e PF00828.14 gi|298674287|ref|YP_003726037.1| - 1.4e-15 57.7 0.2 1.8e-15 57.4 0.1 1.3 1 1 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|298674288|ref|YP_003726038.1| - 9.1e-23 80.7 0.0 1.1e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|298674289|ref|YP_003726039.1| - 1.2e-31 109.4 1.2 1.3e-31 109.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 S4 PF01479.20 gi|298674289|ref|YP_003726039.1| - 0.13 11.6 0.2 0.59 9.6 0.2 2.1 1 1 0 1 1 1 0 S4 domain DUF4643 PF15485.1 gi|298674289|ref|YP_003726039.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4643) RNA_pol_N PF01194.12 gi|298674290|ref|YP_003726040.1| - 7.8e-31 105.8 0.3 8.4e-31 105.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|298674290|ref|YP_003726040.1| - 0.016 15.2 0.1 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.17 gi|298674291|ref|YP_003726041.1| - 1.4e-18 66.3 0.2 1.6e-18 66.2 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Ribosomal_S2 PF00318.15 gi|298674292|ref|YP_003726042.1| - 5.1e-38 130.4 0.1 3.7e-18 65.5 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 HABP4_PAI-RBP1 PF04774.10 gi|298674292|ref|YP_003726042.1| - 0.51 10.8 4.9 0.85 10.1 3.4 1.4 1 0 0 1 1 1 0 Hyaluronan / mRNA binding family Memo PF01875.12 gi|298674293|ref|YP_003726043.1| - 9.2e-79 264.1 0.0 1e-78 263.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|298674293|ref|YP_003726043.1| - 7.2e-05 21.8 0.0 9.2e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase GHMP_kinases_N PF00288.21 gi|298674294|ref|YP_003726044.1| - 1.7e-17 63.2 0.1 3.5e-17 62.2 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|298674294|ref|YP_003726044.1| - 7.3e-14 51.7 4.2 7.4e-14 51.7 0.2 2.4 3 0 0 3 3 3 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|298674294|ref|YP_003726044.1| - 0.011 14.9 0.0 0.022 14.0 0.0 1.6 1 0 0 1 1 1 0 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|298674295|ref|YP_003726045.1| - 4e-35 121.5 1.9 4.5e-35 121.3 1.3 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|298674296|ref|YP_003726046.1| - 5.8e-31 107.6 0.0 1.8e-16 59.9 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|298674296|ref|YP_003726046.1| - 0.00047 19.1 1.6 0.05 12.4 0.1 3.2 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|298674296|ref|YP_003726046.1| - 0.0011 17.9 2.7 0.094 11.6 0.0 3.3 3 1 0 3 3 3 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|298674296|ref|YP_003726046.1| - 0.011 14.6 0.0 0.022 13.7 0.0 1.5 1 0 0 1 1 1 0 Conserved region in glutamate synthase Lactamase_B PF00753.22 gi|298674297|ref|YP_003726047.1| - 3e-17 62.8 0.2 5.9e-17 61.9 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|298674297|ref|YP_003726047.1| - 9.3e-09 35.1 0.2 2.9e-07 30.2 0.1 2.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|298674297|ref|YP_003726047.1| - 7.2e-08 32.1 0.2 1.9e-07 30.7 0.2 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DUF951 PF06107.6 gi|298674297|ref|YP_003726047.1| - 3.1 7.3 5.5 2.1 7.9 0.1 3.0 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF951) PEP-utilizers_C PF02896.13 gi|298674298|ref|YP_003726048.1| - 4.3e-99 331.1 0.0 8.5e-99 330.1 0.0 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|298674298|ref|YP_003726048.1| - 9.2e-66 222.1 0.0 2.4e-65 220.7 0.0 1.6 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|298674298|ref|YP_003726048.1| - 1.6e-23 82.0 0.5 3.2e-23 81.0 0.3 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Phage_connect_1 PF05135.8 gi|298674298|ref|YP_003726048.1| - 0.0039 17.3 1.6 0.022 14.9 0.3 2.5 2 0 0 2 2 2 1 Phage gp6-like head-tail connector protein WXG100 PF06013.7 gi|298674298|ref|YP_003726048.1| - 0.15 12.1 1.7 13 5.9 0.1 2.8 2 0 0 2 2 2 0 Proteins of 100 residues with WXG OSR1_C PF12202.3 gi|298674298|ref|YP_003726048.1| - 0.29 10.7 2.6 0.47 10.1 0.1 2.5 2 0 0 2 2 2 0 Oxidative-stress-responsive kinase 1 C terminal PEP-utilisers_N PF05524.8 gi|298674298|ref|YP_003726048.1| - 0.79 9.5 3.3 1.5 8.6 0.0 2.9 4 0 0 4 4 4 0 PEP-utilising enzyme, N-terminal Gar1 PF04410.9 gi|298674299|ref|YP_003726049.1| - 1.2e-08 34.5 0.1 1.3e-08 34.4 0.1 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|298674300|ref|YP_003726050.1| - 2.9e-47 158.3 1.9 2.7e-24 84.7 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|298674300|ref|YP_003726050.1| - 1.4e-17 62.7 2.0 3e-17 61.6 0.9 2.0 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|298674300|ref|YP_003726050.1| - 6.9e-06 25.6 1.4 1.7e-05 24.3 1.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Sigma70_r4 PF04545.11 gi|298674300|ref|YP_003726050.1| - 4.3e-05 22.7 0.6 0.021 14.1 0.1 3.0 2 0 0 2 2 2 2 Sigma-70, region 4 Elf1 PF05129.8 gi|298674300|ref|YP_003726050.1| - 0.00026 20.5 2.7 0.00033 20.2 0.7 2.0 2 0 0 2 2 2 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|298674300|ref|YP_003726050.1| - 0.0028 16.7 0.3 0.0028 16.7 0.2 1.9 2 0 0 2 2 1 1 zinc-ribbon domain HTH_AsnC-type PF13404.1 gi|298674300|ref|YP_003726050.1| - 0.021 14.3 0.7 0.071 12.6 0.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF3752 PF12572.3 gi|298674300|ref|YP_003726050.1| - 0.034 14.2 2.8 0.038 14.1 0.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3752) Lar_restr_allev PF14354.1 gi|298674300|ref|YP_003726050.1| - 0.094 13.0 2.2 1 9.7 0.9 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.5 gi|298674300|ref|YP_003726050.1| - 0.094 12.2 1.5 0.3 10.5 1.0 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-tcix PF14952.1 gi|298674300|ref|YP_003726050.1| - 0.15 11.4 1.9 0.22 10.8 0.3 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DZR PF12773.2 gi|298674300|ref|YP_003726050.1| - 0.31 10.8 2.2 0.79 9.5 0.4 2.3 2 0 0 2 2 2 0 Double zinc ribbon HTH_31 PF13560.1 gi|298674300|ref|YP_003726050.1| - 0.4 10.9 3.5 3.5 7.8 0.0 3.1 2 1 1 3 3 3 0 Helix-turn-helix domain IBR PF01485.16 gi|298674300|ref|YP_003726050.1| - 1.2 9.1 4.0 0.47 10.3 0.9 1.7 2 0 0 2 2 2 0 IBR domain PhnA_Zn_Ribbon PF08274.7 gi|298674300|ref|YP_003726050.1| - 6.6 6.6 8.6 1.7 8.5 3.2 2.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon LysE PF01810.13 gi|298674301|ref|YP_003726051.1| - 6.5e-29 100.5 15.1 8e-29 100.2 10.5 1.1 1 0 0 1 1 1 1 LysE type translocator DUF2759 PF10958.3 gi|298674301|ref|YP_003726051.1| - 0.041 13.4 0.5 0.041 13.4 0.3 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2759) CRPA PF05745.6 gi|298674301|ref|YP_003726051.1| - 0.72 9.6 5.9 3.6 7.3 0.8 2.2 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Met_10 PF02475.11 gi|298674302|ref|YP_003726052.1| - 1.4e-64 217.4 1.1 1.8e-64 217.0 0.7 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|298674302|ref|YP_003726052.1| - 2.8e-10 40.7 0.1 7.4e-09 36.1 0.0 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674302|ref|YP_003726052.1| - 1.6e-09 37.5 0.0 2.5e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|298674302|ref|YP_003726052.1| - 8.2e-09 35.0 0.0 1.4e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|298674302|ref|YP_003726052.1| - 1.5e-08 34.6 0.0 3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|298674302|ref|YP_003726052.1| - 1.1e-07 31.2 0.4 2.4e-07 30.2 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|298674302|ref|YP_003726052.1| - 4.4e-06 25.8 0.1 5.8e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|298674302|ref|YP_003726052.1| - 1.1e-05 25.0 0.0 2.3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|298674302|ref|YP_003726052.1| - 4.7e-05 22.8 0.2 0.00017 21.0 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.12 gi|298674302|ref|YP_003726052.1| - 0.00058 18.9 0.0 0.024 13.7 0.0 2.4 2 0 0 2 2 2 1 Putative methyltransferase ADH_zinc_N PF00107.21 gi|298674302|ref|YP_003726052.1| - 0.00074 19.0 0.0 0.014 14.9 0.0 2.6 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Methyltransf_11 PF08241.7 gi|298674302|ref|YP_003726052.1| - 0.0021 18.5 0.0 0.0052 17.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|298674302|ref|YP_003726052.1| - 0.0038 15.9 0.0 0.0059 15.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase GidB PF02527.10 gi|298674302|ref|YP_003726052.1| - 0.0093 15.1 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_24 PF13578.1 gi|298674302|ref|YP_003726052.1| - 0.018 15.8 0.0 0.06 14.1 0.0 1.9 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674302|ref|YP_003726052.1| - 0.02 15.3 0.0 0.043 14.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674302|ref|YP_003726052.1| - 0.092 12.4 0.0 0.22 11.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain D5_N PF08706.6 gi|298674303|ref|YP_003726053.1| - 1.3e-13 51.3 0.5 2.6e-13 50.3 0.2 1.7 2 0 0 2 2 2 1 D5 N terminal like Pox_D5 PF03288.11 gi|298674303|ref|YP_003726053.1| - 4.6e-05 23.6 0.4 0.00012 22.3 0.3 1.7 1 0 0 1 1 1 1 Poxvirus D5 protein-like Transglut_core PF01841.14 gi|298674304|ref|YP_003726054.1| - 0.0026 17.9 0.0 0.0097 16.1 0.0 2.0 1 1 0 1 1 1 1 Transglutaminase-like superfamily CarboxypepD_reg PF13620.1 gi|298674304|ref|YP_003726054.1| - 0.0046 16.9 0.0 0.008 16.2 0.0 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|298674304|ref|YP_003726054.1| - 0.019 15.0 0.5 0.038 14.0 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|298674304|ref|YP_003726054.1| - 0.027 14.3 0.1 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF4198 PF10670.4 gi|298674304|ref|YP_003726054.1| - 0.04 13.9 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Phage_integrase PF00589.17 gi|298674305|ref|YP_003726055.1| - 8.3e-30 103.7 0.4 9.5e-30 103.5 0.3 1.0 1 0 0 1 1 1 1 Phage integrase family EVE PF01878.13 gi|298674306|ref|YP_003726056.1| - 4.2e-07 30.0 0.0 7.2e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 EVE domain HNH PF01844.18 gi|298674307|ref|YP_003726057.1| - 1.5e-12 47.1 2.9 4.7e-12 45.5 2.0 1.9 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|298674307|ref|YP_003726057.1| - 0.0018 18.0 0.7 0.0054 16.4 0.2 2.1 2 0 0 2 2 2 1 HNH endonuclease DUF968 PF06147.6 gi|298674307|ref|YP_003726057.1| - 0.04 13.8 0.2 0.085 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF968) Flavokinase PF01687.12 gi|298674308|ref|YP_003726058.1| - 0.005 16.7 1.2 0.0084 15.9 0.8 1.4 1 0 0 1 1 1 1 Riboflavin kinase RE_AlwI PF09491.5 gi|298674309|ref|YP_003726059.1| - 8.1e-87 291.4 26.5 8.1e-87 291.4 18.4 1.4 2 0 0 2 2 2 1 AlwI restriction endonuclease Glycohydro_20b2 PF14845.1 gi|298674309|ref|YP_003726059.1| - 0.26 11.9 5.6 6.6 7.4 1.9 3.2 3 1 0 3 3 3 0 beta-acetyl hexosaminidase like N6_N4_Mtase PF01555.13 gi|298674310|ref|YP_003726060.1| - 5.4e-24 84.9 3.5 1.3e-21 77.1 2.4 2.1 1 1 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|298674310|ref|YP_003726060.1| - 9.3e-12 45.0 0.0 8.8e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|298674310|ref|YP_003726060.1| - 3e-06 26.9 0.0 0.035 13.6 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.10 gi|298674310|ref|YP_003726060.1| - 0.00027 20.4 3.0 0.0041 16.6 0.0 2.5 2 1 0 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.1 gi|298674310|ref|YP_003726060.1| - 0.00049 19.7 0.1 0.33 10.5 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298674310|ref|YP_003726060.1| - 0.00067 20.2 0.0 0.038 14.5 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674310|ref|YP_003726060.1| - 0.028 14.8 0.0 7.5 7.1 0.0 3.1 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674310|ref|YP_003726060.1| - 0.058 13.8 0.1 10 6.6 0.0 3.0 2 1 0 2 2 2 0 Methyltransferase domain UPRTase PF14681.1 gi|298674310|ref|YP_003726060.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF2254 PF10011.4 gi|298674311|ref|YP_003726061.1| - 4.6e-13 48.3 4.0 9e-13 47.4 2.8 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Phage_integrase PF00589.17 gi|298674312|ref|YP_003726062.1| - 6.1e-25 87.8 0.2 1.5e-24 86.6 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|298674312|ref|YP_003726062.1| - 1.3e-05 25.2 0.4 3.7e-05 23.7 0.1 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain zinc_ribbon_2 PF13240.1 gi|298674312|ref|YP_003726062.1| - 4.5e-05 22.7 3.9 7.8e-05 22.0 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|298674312|ref|YP_003726062.1| - 0.00035 20.3 1.4 0.00062 19.5 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|298674312|ref|YP_003726062.1| - 0.0026 16.9 4.1 0.0041 16.2 2.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_int_SAM_4 PF13495.1 gi|298674312|ref|YP_003726062.1| - 0.068 13.5 1.9 1.3 9.3 0.7 2.3 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF2116 PF09889.4 gi|298674312|ref|YP_003726062.1| - 0.13 12.0 1.2 0.45 10.3 0.8 1.9 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Amnionless PF14828.1 gi|298674312|ref|YP_003726062.1| - 0.31 9.5 2.6 0.13 10.7 0.3 1.5 2 0 0 2 2 2 0 Amnionless DUF3654 PF12376.3 gi|298674315|ref|YP_003726065.1| - 0.052 13.3 0.5 0.055 13.2 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3654) ArsC PF03960.10 gi|298674315|ref|YP_003726065.1| - 0.1 12.6 0.3 0.1 12.6 0.2 1.1 1 0 0 1 1 1 0 ArsC family DUF1268 PF06896.6 gi|298674315|ref|YP_003726065.1| - 0.16 12.2 1.0 0.17 12.2 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1268) HTH_OrfB_IS605 PF12323.3 gi|298674316|ref|YP_003726066.1| - 3.8e-13 48.5 0.0 5.8e-13 47.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AATF-Che1 PF13339.1 gi|298674316|ref|YP_003726066.1| - 0.11 12.5 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 Apoptosis antagonizing transcription factor OrfB_IS605 PF01385.14 gi|298674317|ref|YP_003726067.1| - 6.6e-34 117.2 0.7 8.9e-34 116.8 0.1 1.4 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674317|ref|YP_003726067.1| - 3.5e-27 93.8 1.2 7e-27 92.8 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|298674317|ref|YP_003726067.1| - 0.0021 17.8 0.7 0.0047 16.7 0.5 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF4503 PF14951.1 gi|298674317|ref|YP_003726067.1| - 0.051 11.7 0.1 0.074 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) Remorin_C PF03763.8 gi|298674317|ref|YP_003726067.1| - 0.052 13.0 4.4 0.1 12.1 3.1 1.4 1 0 0 1 1 1 0 Remorin, C-terminal region zinc_ribbon_2 PF13240.1 gi|298674317|ref|YP_003726067.1| - 0.054 13.0 4.7 2.9 7.5 3.6 2.6 1 1 2 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|298674317|ref|YP_003726067.1| - 0.1 11.9 2.1 0.82 9.0 1.5 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|298674317|ref|YP_003726067.1| - 0.11 12.3 2.1 0.24 11.2 1.4 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298674317|ref|YP_003726067.1| - 0.26 10.5 4.5 4.6 6.5 3.3 2.5 1 1 2 3 3 3 0 zinc-ribbon domain Glyoxalase PF00903.20 gi|298674318|ref|YP_003726068.1| - 2.4e-18 66.3 0.0 2.7e-18 66.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|298674318|ref|YP_003726068.1| - 8.6e-16 58.4 0.0 9.9e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|298674318|ref|YP_003726068.1| - 5.4e-12 45.6 0.0 6.8e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|298674318|ref|YP_003726068.1| - 0.0022 17.9 0.0 0.0034 17.3 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain TPR_7 PF13176.1 gi|298674318|ref|YP_003726068.1| - 0.056 13.2 0.1 17 5.5 0.0 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Arabinose_Isome PF02610.10 gi|298674318|ref|YP_003726068.1| - 0.11 11.4 0.0 0.13 11.1 0.0 1.0 1 0 0 1 1 1 0 L-arabinose isomerase TPR_8 PF13181.1 gi|298674318|ref|YP_003726068.1| - 0.18 11.6 1.1 26 4.9 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat UvrD-helicase PF00580.16 gi|298674323|ref|YP_003726073.1| - 5.6e-17 62.0 2.5 3.2e-08 33.2 0.0 3.3 4 0 0 4 4 4 2 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.1 gi|298674323|ref|YP_003726073.1| - 7.6e-09 35.6 0.0 1.9e-08 34.3 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain NERD PF08378.6 gi|298674323|ref|YP_003726073.1| - 1.8e-07 31.4 0.2 4.5e-07 30.1 0.1 1.8 1 0 0 1 1 1 1 Nuclease-related domain Viral_helicase1 PF01443.13 gi|298674323|ref|YP_003726073.1| - 2e-07 30.7 0.1 0.13 11.7 0.0 3.6 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|298674323|ref|YP_003726073.1| - 1.3e-06 28.0 0.0 2.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain UvrD_C PF13361.1 gi|298674323|ref|YP_003726073.1| - 1.7e-06 27.7 5.7 9e-06 25.3 0.1 3.0 2 1 1 3 3 3 1 UvrD-like helicase C-terminal domain DUF2075 PF09848.4 gi|298674323|ref|YP_003726073.1| - 4.9e-06 25.7 0.0 3.2e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_12 PF13087.1 gi|298674323|ref|YP_003726073.1| - 2.6e-05 23.6 0.6 0.00026 20.4 0.0 2.5 2 1 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|298674323|ref|YP_003726073.1| - 0.00013 21.8 0.1 0.004 17.0 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DAP3 PF10236.4 gi|298674323|ref|YP_003726073.1| - 0.0037 16.2 0.1 0.013 14.4 0.0 1.9 2 1 1 3 3 3 1 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.24 gi|298674323|ref|YP_003726073.1| - 0.0038 16.7 0.0 0.027 13.9 0.0 2.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|298674323|ref|YP_003726073.1| - 0.011 15.8 0.0 0.082 13.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain SEA PF01390.15 gi|298674323|ref|YP_003726073.1| - 0.039 13.6 0.2 4 7.1 0.0 3.1 3 0 0 3 3 2 0 SEA domain KaiC PF06745.8 gi|298674323|ref|YP_003726073.1| - 0.04 13.0 0.0 0.076 12.1 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_31 PF13614.1 gi|298674323|ref|YP_003726073.1| - 0.041 13.8 0.0 0.15 11.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|298674323|ref|YP_003726073.1| - 0.079 12.1 0.0 0.23 10.6 0.0 1.8 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.1 gi|298674323|ref|YP_003726073.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|298674323|ref|YP_003726073.1| - 0.15 11.4 0.0 0.3 10.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zn_dep_PLPC PF00882.13 gi|298674324|ref|YP_003726074.1| - 1.6e-05 24.6 0.0 2.5e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 Zinc dependent phospholipase C Pribosyltran_N PF13793.1 gi|298674324|ref|YP_003726074.1| - 0.087 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 N-terminal domain of ribose phosphate pyrophosphokinase UvrD-helicase PF00580.16 gi|298674325|ref|YP_003726075.1| - 4e-63 213.6 5.9 4e-63 213.6 4.1 2.6 2 1 0 2 2 2 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|298674325|ref|YP_003726075.1| - 8.6e-56 189.8 4.1 8.6e-56 189.8 2.8 2.9 3 0 0 3 3 3 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|298674325|ref|YP_003726075.1| - 1.1e-30 106.8 0.3 1.1e-30 106.8 0.2 2.2 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|298674325|ref|YP_003726075.1| - 4.3e-13 48.8 0.0 1e-12 47.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|298674325|ref|YP_003726075.1| - 3.9e-10 39.7 0.1 0.00018 21.5 0.0 3.3 3 0 0 3 3 2 2 UvrD-like helicase C-terminal domain DUF2800 PF10926.3 gi|298674325|ref|YP_003726075.1| - 9.3e-09 34.8 0.0 1.9e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) Viral_helicase1 PF01443.13 gi|298674325|ref|YP_003726075.1| - 1.1e-06 28.3 2.8 0.6 9.5 0.1 4.8 5 0 0 5 5 5 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|298674325|ref|YP_003726075.1| - 3.5e-06 26.7 0.0 4.9e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.1 gi|298674325|ref|YP_003726075.1| - 0.0019 17.5 1.8 0.93 8.8 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_11 PF13086.1 gi|298674325|ref|YP_003726075.1| - 0.026 14.0 0.8 0.074 12.6 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|298674325|ref|YP_003726075.1| - 0.053 13.6 0.0 13 5.9 0.0 2.9 2 0 0 2 2 2 0 AAA domain SNase PF00565.12 gi|298674326|ref|YP_003726076.1| - 3e-08 33.9 0.4 4.1e-08 33.4 0.3 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue HTH_24 PF13412.1 gi|298674327|ref|YP_003726077.1| - 2.2e-06 26.9 0.2 3.7e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|298674327|ref|YP_003726077.1| - 2.3e-06 27.1 0.1 6.8e-06 25.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|298674327|ref|YP_003726077.1| - 1.2e-05 25.0 0.0 6.9e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|298674327|ref|YP_003726077.1| - 0.00014 21.4 0.1 0.00053 19.6 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|298674327|ref|YP_003726077.1| - 0.00014 21.3 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|298674327|ref|YP_003726077.1| - 0.00016 21.2 0.1 0.00032 20.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain Cas_Cas02710 PF09670.5 gi|298674327|ref|YP_003726077.1| - 0.00021 20.0 0.4 0.00027 19.6 0.2 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.6 gi|298674327|ref|YP_003726077.1| - 0.00041 18.8 0.2 0.00051 18.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) HTH_45 PF14947.1 gi|298674327|ref|YP_003726077.1| - 0.00054 19.7 0.3 0.0013 18.5 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|298674327|ref|YP_003726077.1| - 0.0024 17.5 0.0 0.004 16.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|298674327|ref|YP_003726077.1| - 0.0048 17.0 0.1 0.024 14.7 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Cas_APE2256 PF09651.5 gi|298674327|ref|YP_003726077.1| - 0.0092 15.6 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) HTH_28 PF13518.1 gi|298674327|ref|YP_003726077.1| - 0.013 15.5 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|298674327|ref|YP_003726077.1| - 0.02 15.1 0.0 0.05 13.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.17 gi|298674327|ref|YP_003726077.1| - 0.033 13.8 0.1 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|298674327|ref|YP_003726077.1| - 0.051 13.6 0.0 0.099 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|298674327|ref|YP_003726077.1| - 0.056 12.8 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_10 PF04967.7 gi|298674327|ref|YP_003726077.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_34 PF13601.1 gi|298674327|ref|YP_003726077.1| - 0.11 12.5 0.1 0.23 11.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain YqbF PF14553.1 gi|298674328|ref|YP_003726078.1| - 0.14 11.7 0.2 0.17 11.5 0.2 1.2 1 0 0 1 1 1 0 YqbF, hypothetical protein domain AIM24 PF01987.12 gi|298674329|ref|YP_003726079.1| - 1.3e-50 171.8 0.0 1.6e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF4139 PF13598.1 gi|298674330|ref|YP_003726080.1| - 2.8e-10 40.0 0.5 1.5e-06 27.7 0.6 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4139) DUF150 PF02576.12 gi|298674330|ref|YP_003726080.1| - 0.0079 15.7 1.2 0.018 14.5 0.0 2.2 2 1 0 2 2 2 1 Uncharacterised BCR, YhbC family COG0779 UCR_6-4kD PF08997.5 gi|298674331|ref|YP_003726081.1| - 0.071 12.8 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein COX15-CtaA PF02628.10 gi|298674332|ref|YP_003726082.1| - 0.0019 17.1 0.9 0.0031 16.4 0.6 1.3 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein Mannosyl_trans2 PF04188.8 gi|298674332|ref|YP_003726082.1| - 0.023 13.6 3.1 0.034 13.0 2.2 1.2 1 0 0 1 1 1 0 Mannosyltransferase (PIG-V)) TauE PF01925.14 gi|298674332|ref|YP_003726082.1| - 0.11 11.9 14.0 0.16 11.4 9.7 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF4131 PF13567.1 gi|298674332|ref|YP_003726082.1| - 0.41 10.0 4.1 10 5.4 2.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2448 PF10476.4 gi|298674332|ref|YP_003726082.1| - 0.69 9.3 4.2 1.1 8.7 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2448) UbiA PF01040.13 gi|298674332|ref|YP_003726082.1| - 0.95 8.6 7.6 1.5 7.9 5.3 1.3 1 0 0 1 1 1 0 UbiA prenyltransferase family OppC_N PF12911.2 gi|298674332|ref|YP_003726082.1| - 1.3 8.4 0.0 1.3 8.4 0.0 2.6 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF3784 PF12650.2 gi|298674332|ref|YP_003726082.1| - 1.7 8.6 12.8 3.3 7.7 0.7 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF3784) MFS_1 PF07690.11 gi|298674333|ref|YP_003726083.1| - 0.069 11.8 20.2 0.096 11.3 14.0 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily Cytochrom_B_N_2 PF13631.1 gi|298674333|ref|YP_003726083.1| - 1.5 8.6 11.8 5.3 6.7 3.4 2.1 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB ABC2_membrane_3 PF12698.2 gi|298674333|ref|YP_003726083.1| - 6.7 5.6 26.4 0.12 11.4 11.0 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein PLDc_N PF13396.1 gi|298674334|ref|YP_003726084.1| - 5e-15 54.8 1.7 5e-15 54.8 1.2 2.2 2 1 1 3 3 3 1 Phospholipase_D-nuclease N-terminal DUF4131 PF13567.1 gi|298674334|ref|YP_003726084.1| - 0.0053 16.1 3.8 0.0076 15.6 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) LGT PF01790.13 gi|298674334|ref|YP_003726084.1| - 0.023 13.6 4.4 0.036 13.0 3.1 1.4 1 1 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase UPF0220 PF05255.6 gi|298674334|ref|YP_003726084.1| - 0.075 12.2 2.3 0.11 11.7 1.6 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0220) FixQ PF05545.6 gi|298674334|ref|YP_003726084.1| - 0.078 12.6 0.3 0.078 12.6 0.2 2.4 3 0 0 3 3 2 0 Cbb3-type cytochrome oxidase component FixQ RseC_MucC PF04246.7 gi|298674334|ref|YP_003726084.1| - 0.1 12.2 4.6 0.097 12.2 1.4 1.8 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF368 PF04018.8 gi|298674334|ref|YP_003726084.1| - 0.12 11.5 2.5 0.14 11.3 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF368) DUF2500 PF10694.4 gi|298674334|ref|YP_003726084.1| - 0.3 11.1 2.7 14 5.7 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2500) DUF2516 PF10724.4 gi|298674334|ref|YP_003726084.1| - 0.42 10.6 5.3 0.33 10.9 2.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2516) YbjM PF11045.3 gi|298674334|ref|YP_003726084.1| - 0.6 9.8 3.6 0.83 9.4 2.5 1.3 1 1 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae YfhO PF09586.5 gi|298674334|ref|YP_003726084.1| - 1 7.3 3.8 1.1 7.1 2.6 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF4229 PF14012.1 gi|298674334|ref|YP_003726084.1| - 1.4 8.8 8.1 1.6 8.6 4.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Caveolin PF01146.12 gi|298674334|ref|YP_003726084.1| - 1.7 8.2 8.9 2.2 7.8 6.1 1.5 1 1 0 1 1 1 0 Caveolin Anoctamin PF04547.7 gi|298674334|ref|YP_003726084.1| - 2.4 6.7 7.6 0.44 9.1 3.0 1.4 1 1 1 2 2 2 0 Calcium-activated chloride channel NfeD PF01957.13 gi|298674334|ref|YP_003726084.1| - 5.1 7.2 6.8 27 4.8 4.6 1.9 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding MFS_1 PF07690.11 gi|298674334|ref|YP_003726084.1| - 6.4 5.3 11.7 20 3.7 8.3 1.6 1 1 0 1 1 1 0 Major Facilitator Superfamily OrfB_IS605 PF01385.14 gi|298674335|ref|YP_003726085.1| - 2.1e-51 174.4 0.3 4.2e-51 173.5 0.2 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674335|ref|YP_003726085.1| - 2.9e-09 36.4 0.8 1.2e-08 34.4 0.1 2.4 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298674335|ref|YP_003726085.1| - 0.00042 19.8 0.4 0.0011 18.5 0.3 1.7 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298674335|ref|YP_003726085.1| - 0.073 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) DUF3887 PF13026.1 gi|298674335|ref|YP_003726085.1| - 1.6 9.0 7.8 0.49 10.6 1.0 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF3887) MARVEL PF01284.18 gi|298674336|ref|YP_003726086.1| - 0.44 10.3 6.4 0.14 12.0 2.3 1.7 2 0 0 2 2 2 0 Membrane-associating domain Col_cuticle_N PF01484.12 gi|298674336|ref|YP_003726086.1| - 0.82 9.3 0.1 0.82 9.3 0.0 2.5 3 0 0 3 3 3 0 Nematode cuticle collagen N-terminal domain DUF4064 PF13273.1 gi|298674336|ref|YP_003726086.1| - 1.8 8.6 6.0 0.5 10.5 0.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF4064) DUF2207 PF09972.4 gi|298674337|ref|YP_003726087.1| - 0.035 12.6 1.0 0.038 12.5 0.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Presenilin PF01080.12 gi|298674337|ref|YP_003726087.1| - 0.053 12.3 0.9 0.062 12.1 0.6 1.0 1 0 0 1 1 1 0 Presenilin DUF3923 PF13061.1 gi|298674337|ref|YP_003726087.1| - 0.069 13.0 1.3 0.097 12.5 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3923) NrfD PF03916.9 gi|298674338|ref|YP_003726088.1| - 0.026 13.9 0.1 0.027 13.8 0.1 1.0 1 0 0 1 1 1 0 Polysulphide reductase, NrfD DUF751 PF05421.6 gi|298674338|ref|YP_003726088.1| - 0.068 13.4 1.0 0.084 13.1 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF751) DUF3169 PF11368.3 gi|298674338|ref|YP_003726088.1| - 0.072 12.2 0.7 0.075 12.2 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DapB_N PF01113.15 gi|298674338|ref|YP_003726088.1| - 0.13 12.2 0.2 0.16 11.8 0.1 1.3 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HATPase_c PF02518.21 gi|298674339|ref|YP_003726089.1| - 8e-24 83.5 0.3 5.5e-23 80.8 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|298674339|ref|YP_003726089.1| - 2.1e-06 27.5 0.4 5.4e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|298674339|ref|YP_003726089.1| - 0.00019 21.2 0.0 0.00055 19.7 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain Iso_dh PF00180.15 gi|298674339|ref|YP_003726089.1| - 0.041 12.8 0.5 0.09 11.6 0.3 1.5 1 1 1 2 2 2 0 Isocitrate/isopropylmalate dehydrogenase CheW PF01584.14 gi|298674340|ref|YP_003726090.1| - 6.1e-38 129.3 3.4 7.2e-38 129.1 2.4 1.1 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|298674341|ref|YP_003726091.1| - 3.4e-63 213.0 72.0 4e-59 199.7 26.6 4.9 3 1 2 5 5 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|298674341|ref|YP_003726091.1| - 1.3e-34 118.6 0.5 2e-16 60.2 0.0 3.3 3 0 0 3 3 2 2 PAS domain PAS_4 PF08448.5 gi|298674341|ref|YP_003726091.1| - 5.8e-33 113.2 0.0 3.2e-15 56.1 0.0 2.8 3 0 0 3 3 2 2 PAS fold PAS PF00989.19 gi|298674341|ref|YP_003726091.1| - 9.1e-17 60.8 0.0 2.7e-08 33.5 0.0 3.1 3 0 0 3 3 2 2 PAS fold PAS_10 PF13596.1 gi|298674341|ref|YP_003726091.1| - 1.4e-10 41.3 4.4 0.0025 18.0 0.0 5.3 4 2 0 4 4 4 2 PAS domain HAMP PF00672.20 gi|298674341|ref|YP_003726091.1| - 1.2e-09 38.2 14.2 7.1e-06 26.1 0.1 5.6 5 0 0 5 5 5 1 HAMP domain PhageMin_Tail PF10145.4 gi|298674341|ref|YP_003726091.1| - 3e-07 30.3 36.5 0.0021 17.7 8.3 3.9 3 1 1 4 4 4 2 Phage-related minor tail protein AAA_13 PF13166.1 gi|298674341|ref|YP_003726091.1| - 1.5e-05 23.7 46.1 0.0055 15.2 16.5 2.4 1 1 0 2 2 2 2 AAA domain DUF948 PF06103.6 gi|298674341|ref|YP_003726091.1| - 3.6e-05 23.5 52.7 0.018 14.8 4.4 6.7 4 2 3 7 7 6 3 Bacterial protein of unknown function (DUF948) EzrA PF06160.7 gi|298674341|ref|YP_003726091.1| - 4e-05 22.0 34.5 0.00014 20.2 11.9 2.5 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA PAS_8 PF13188.1 gi|298674341|ref|YP_003726091.1| - 7.4e-05 22.4 0.0 0.18 11.7 0.0 2.8 2 0 0 2 2 2 1 PAS domain DUF1664 PF07889.7 gi|298674341|ref|YP_003726091.1| - 0.00025 20.8 47.8 0.16 11.7 4.8 6.1 3 2 3 6 6 6 4 Protein of unknown function (DUF1664) DUF4200 PF13863.1 gi|298674341|ref|YP_003726091.1| - 0.00076 19.4 37.7 0.024 14.5 3.5 4.7 2 1 3 5 5 4 2 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|298674341|ref|YP_003726091.1| - 0.003 17.2 62.0 0.017 14.8 9.1 6.1 4 2 2 6 6 6 3 Laminin Domain II CheZ PF04344.8 gi|298674341|ref|YP_003726091.1| - 0.0091 15.6 35.5 0.015 14.9 5.7 4.7 3 1 2 5 5 4 1 Chemotaxis phosphatase, CheZ Reo_sigmaC PF04582.7 gi|298674341|ref|YP_003726091.1| - 0.016 14.4 52.8 0.024 13.8 15.0 3.7 1 1 3 4 4 4 0 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|298674341|ref|YP_003726091.1| - 0.039 11.6 34.4 0.012 13.3 7.9 2.4 1 1 1 2 2 2 0 AAA domain WXG100 PF06013.7 gi|298674341|ref|YP_003726091.1| - 0.051 13.5 41.8 1.9 8.5 2.7 7.4 3 2 5 8 8 7 0 Proteins of 100 residues with WXG Flu_NS2 PF00601.14 gi|298674341|ref|YP_003726091.1| - 0.069 13.3 19.3 1.1 9.5 0.4 5.5 2 2 4 6 6 6 0 Influenza non-structural protein (NS2) Laminin_I PF06008.9 gi|298674341|ref|YP_003726091.1| - 0.091 12.0 46.5 0.73 9.1 13.3 4.4 2 1 1 4 4 3 0 Laminin Domain I DUF3584 PF12128.3 gi|298674341|ref|YP_003726091.1| - 0.093 10.0 38.2 0.18 9.0 26.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RmuC PF02646.11 gi|298674341|ref|YP_003726091.1| - 0.1 11.3 36.4 0.17 10.7 1.2 4.8 2 2 2 4 4 4 0 RmuC family Syntaxin PF00804.20 gi|298674341|ref|YP_003726091.1| - 0.38 10.9 59.3 0.96 9.6 7.2 5.8 2 1 3 5 5 5 0 Syntaxin Myosin_tail_1 PF01576.14 gi|298674341|ref|YP_003726091.1| - 0.41 8.3 44.3 1.5 6.4 15.1 2.5 1 1 1 2 2 2 0 Myosin tail IncA PF04156.9 gi|298674341|ref|YP_003726091.1| - 0.47 10.0 45.0 6.5 6.3 11.9 4.1 2 1 2 4 4 3 0 IncA protein AKNA PF12443.3 gi|298674341|ref|YP_003726091.1| - 0.53 10.3 23.2 2 8.4 2.4 5.2 3 2 2 6 6 5 0 AT-hook-containing transcription factor RPW8 PF05659.6 gi|298674341|ref|YP_003726091.1| - 0.64 9.5 10.2 3.3 7.2 2.0 3.7 1 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 WEMBL PF05701.6 gi|298674341|ref|YP_003726091.1| - 0.73 8.2 50.9 0.48 8.8 13.3 2.5 2 1 1 3 3 3 0 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|298674341|ref|YP_003726091.1| - 0.73 8.4 51.9 1.3 7.5 8.7 3.8 2 1 0 3 3 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|298674341|ref|YP_003726091.1| - 0.84 9.6 45.6 0.84 9.6 4.8 5.7 2 1 4 7 7 6 0 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.4 gi|298674341|ref|YP_003726091.1| - 0.87 9.7 49.2 3.8 7.6 5.9 6.6 3 2 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMP_2 PF06791.8 gi|298674341|ref|YP_003726091.1| - 0.91 9.1 37.5 4.5 6.8 9.1 4.4 1 1 1 3 3 3 0 Prophage tail length tape measure protein DUF812 PF05667.6 gi|298674341|ref|YP_003726091.1| - 1 7.8 51.9 0.066 11.7 16.1 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Spectrin PF00435.16 gi|298674341|ref|YP_003726091.1| - 1.3 9.3 31.4 1.9 8.8 1.8 4.9 2 1 5 7 7 6 0 Spectrin repeat Syntaxin-6_N PF09177.6 gi|298674341|ref|YP_003726091.1| - 1.3 9.4 47.6 0.58 10.6 5.3 5.7 3 2 3 6 6 6 0 Syntaxin 6, N-terminal Hormone_1 PF00103.15 gi|298674341|ref|YP_003726091.1| - 1.5 8.1 29.8 0.048 12.9 3.8 4.8 2 2 2 4 4 4 0 Somatotropin hormone family DUF479 PF04336.7 gi|298674341|ref|YP_003726091.1| - 1.7 8.7 6.1 8.6 6.5 0.4 4.3 3 2 2 5 5 4 0 Protein of unknown function, DUF479 DUF4559 PF15112.1 gi|298674341|ref|YP_003726091.1| - 1.9 7.6 31.7 0.019 14.1 7.1 2.9 3 0 0 3 3 2 0 Domain of unknown function (DUF4559) DUF869 PF05911.6 gi|298674341|ref|YP_003726091.1| - 2.5 6.2 57.8 0.92 7.6 15.8 2.5 2 1 0 2 2 2 0 Plant protein of unknown function (DUF869) DUF2937 PF11157.3 gi|298674341|ref|YP_003726091.1| - 2.9 7.2 15.4 0.27 10.5 1.3 4.0 3 1 0 4 4 4 0 Protein of unknown function (DUF2937) NPV_P10 PF05531.7 gi|298674341|ref|YP_003726091.1| - 3.4 7.9 58.0 0.33 11.2 2.9 8.2 5 4 3 8 8 7 0 Nucleopolyhedrovirus P10 protein DUF677 PF05055.7 gi|298674341|ref|YP_003726091.1| - 3.4 6.2 36.8 3.4e+02 -0.4 0.1 4.1 1 1 1 2 2 2 0 Protein of unknown function (DUF677) GLE1 PF07817.8 gi|298674341|ref|YP_003726091.1| - 4.4 6.1 38.0 0.027 13.4 4.7 4.5 2 2 3 5 5 5 0 GLE1-like protein IFT57 PF10498.4 gi|298674341|ref|YP_003726091.1| - 4.6 5.8 46.6 0.087 11.5 14.6 3.6 2 2 0 2 2 2 0 Intra-flagellar transport protein 57 DASH_Duo1 PF08651.5 gi|298674341|ref|YP_003726091.1| - 6.3 6.4 39.5 0.71 9.4 1.5 7.7 4 2 5 9 9 9 0 DASH complex subunit Duo1 COG2 PF06148.6 gi|298674341|ref|YP_003726091.1| - 7.9 6.3 43.3 0.035 13.9 1.3 6.4 4 2 3 7 7 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Atg14 PF10186.4 gi|298674341|ref|YP_003726091.1| - 9.9 5.0 32.9 0.12 11.2 2.8 3.9 1 1 3 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 ING PF12998.2 gi|298674341|ref|YP_003726091.1| - 10 6.4 28.3 21 5.4 9.3 4.6 2 2 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding HATPase_c PF02518.21 gi|298674342|ref|YP_003726092.1| - 3.4e-25 87.9 0.1 7.3e-25 86.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|298674342|ref|YP_003726092.1| - 8.3e-09 35.4 0.2 7.3e-08 32.4 0.0 2.4 2 1 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|298674342|ref|YP_003726092.1| - 9.9e-07 28.6 0.0 3.4e-06 26.9 0.0 1.9 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|298674342|ref|YP_003726092.1| - 1.6e-06 28.4 0.2 5.8e-05 23.4 0.0 2.9 3 1 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|298674342|ref|YP_003726092.1| - 0.00048 19.7 0.1 0.0011 18.6 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|298674342|ref|YP_003726092.1| - 0.0013 18.3 0.2 0.0053 16.4 0.0 2.0 2 0 0 2 2 2 1 GHKL domain PAS PF00989.19 gi|298674342|ref|YP_003726092.1| - 0.0033 17.2 0.0 0.0085 15.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|298674342|ref|YP_003726092.1| - 0.014 15.1 0.0 0.058 13.1 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|298674342|ref|YP_003726092.1| - 0.045 13.6 0.1 0.29 11.0 0.0 2.3 2 0 0 2 2 2 0 PAS domain Peptidase_S66 PF02016.10 gi|298674342|ref|YP_003726092.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 LD-carboxypeptidase PAS_8 PF13188.1 gi|298674343|ref|YP_003726093.1| - 8.5e-13 47.6 0.0 1.2e-05 24.9 0.0 2.2 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|298674343|ref|YP_003726093.1| - 8e-12 45.1 0.0 4.8e-06 26.5 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|298674343|ref|YP_003726093.1| - 1.8e-09 37.3 0.0 0.00021 21.0 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|298674343|ref|YP_003726093.1| - 2.1e-08 34.4 0.0 0.00043 20.6 0.0 2.6 2 1 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|298674343|ref|YP_003726093.1| - 0.099 12.6 0.0 5 7.1 0.0 2.8 3 1 0 3 3 3 0 PAS fold PAS_9 PF13426.1 gi|298674344|ref|YP_003726094.1| - 1.1e-47 160.6 2.6 4.4e-17 62.3 0.2 3.9 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|298674344|ref|YP_003726094.1| - 2.5e-36 123.9 0.0 4.5e-13 48.9 0.0 3.8 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|298674344|ref|YP_003726094.1| - 1.2e-31 108.7 0.0 2.3e-31 107.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|298674344|ref|YP_003726094.1| - 4.6e-23 81.1 0.2 1.3e-12 47.6 0.0 4.2 4 1 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|298674344|ref|YP_003726094.1| - 1.6e-19 68.9 0.1 3e-05 23.7 0.0 4.0 4 0 0 4 4 4 3 PAS domain HisKA PF00512.20 gi|298674344|ref|YP_003726094.1| - 1.4e-18 66.5 1.4 2.8e-18 65.6 0.0 2.3 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|298674344|ref|YP_003726094.1| - 1.4e-17 63.6 0.0 0.00017 21.5 0.0 4.0 4 0 0 4 4 4 3 PAS fold GAF_2 PF13185.1 gi|298674344|ref|YP_003726094.1| - 5.9e-15 56.0 0.0 1.2e-14 55.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|298674344|ref|YP_003726094.1| - 4e-11 43.1 3.7 8.3e-05 22.8 0.1 4.1 3 1 0 3 3 3 2 PAS domain PAS_11 PF14598.1 gi|298674344|ref|YP_003726094.1| - 2.4e-10 40.3 0.5 2.1e-07 30.9 0.0 3.8 3 1 1 4 4 4 1 PAS domain GAF_3 PF13492.1 gi|298674344|ref|YP_003726094.1| - 2e-09 37.6 0.0 9.3e-09 35.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.2 gi|298674344|ref|YP_003726094.1| - 2e-05 24.5 0.0 0.21 11.6 0.0 3.7 3 1 0 3 3 3 2 PAS fold GAF PF01590.21 gi|298674344|ref|YP_003726094.1| - 0.00025 21.2 0.0 0.00044 20.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|298674344|ref|YP_003726094.1| - 0.072 12.8 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain VCBS PF13517.1 gi|298674345|ref|YP_003726095.1| - 8.5e-14 51.6 11.8 2.5e-10 40.5 1.1 2.4 1 1 1 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|298674345|ref|YP_003726095.1| - 1.7e-09 37.0 5.0 0.00068 19.2 0.3 2.8 3 0 0 3 3 3 2 FG-GAP repeat TcdB_toxin_midN PF12256.3 gi|298674345|ref|YP_003726095.1| - 0.00044 19.7 0.8 0.056 12.8 0.0 2.2 1 1 0 2 2 2 2 Insecticide toxin TcdB middle/N-terminal region RRXRR PF14239.1 gi|298674346|ref|YP_003726096.1| - 3.8e-67 225.0 1.4 5.2e-67 224.6 1.0 1.2 1 0 0 1 1 1 1 RRXRR protein HNH PF01844.18 gi|298674346|ref|YP_003726096.1| - 8.3e-13 47.9 1.6 8.3e-13 47.9 1.1 2.2 2 0 0 2 2 2 1 HNH endonuclease HNH_4 PF13395.1 gi|298674346|ref|YP_003726096.1| - 1.2e-11 44.0 0.1 3.6e-11 42.5 0.1 1.8 1 1 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.1 gi|298674346|ref|YP_003726096.1| - 0.0014 18.6 0.3 0.0026 17.7 0.2 1.5 1 0 0 1 1 1 1 HNH endonuclease Lar_restr_allev PF14354.1 gi|298674346|ref|YP_003726096.1| - 0.012 15.9 0.1 0.026 14.8 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar SH3_2 PF07653.12 gi|298674346|ref|YP_003726096.1| - 0.031 13.7 0.2 0.45 10.0 0.1 2.5 1 1 0 2 2 2 0 Variant SH3 domain HLH PF00010.21 gi|298674346|ref|YP_003726096.1| - 0.1 12.2 0.0 0.1 12.2 0.0 2.4 2 0 0 2 2 2 0 Helix-loop-helix DNA-binding domain Chordopox_G2 PF05796.7 gi|298674347|ref|YP_003726097.1| - 0.0033 16.5 0.0 0.0053 15.9 0.0 1.4 1 0 0 1 1 1 1 Chordopoxvirus protein G2 Glyco_hydro_2 PF00703.16 gi|298674347|ref|YP_003726097.1| - 0.012 16.0 0.2 0.53 10.7 0.0 2.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 MacB_PCD PF12704.2 gi|298674348|ref|YP_003726098.1| - 2.5e-28 99.2 3.1 2.5e-28 99.2 2.2 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|298674348|ref|YP_003726098.1| - 1.6e-20 73.0 10.8 1.6e-20 73.0 7.5 1.8 2 0 0 2 2 2 1 FtsX-like permease family Herpes_US9 PF06072.6 gi|298674348|ref|YP_003726098.1| - 1 9.2 4.3 0.38 10.6 0.1 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 MacB_PCD PF12704.2 gi|298674349|ref|YP_003726099.1| - 8.2e-28 97.5 0.2 1.2e-27 96.9 0.2 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|298674349|ref|YP_003726099.1| - 5.2e-22 77.8 15.4 1.1e-21 76.8 7.4 2.1 2 0 0 2 2 2 2 FtsX-like permease family ABC_tran PF00005.22 gi|298674350|ref|YP_003726100.1| - 3.7e-35 121.2 0.0 5.6e-35 120.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298674350|ref|YP_003726100.1| - 3.3e-12 46.9 0.2 1.1e-09 38.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|298674350|ref|YP_003726100.1| - 6.3e-09 35.3 0.3 2.3e-07 30.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|298674350|ref|YP_003726100.1| - 4.8e-05 22.7 0.2 9.8e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|298674350|ref|YP_003726100.1| - 0.00011 21.4 0.5 0.014 14.4 0.8 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|298674350|ref|YP_003726100.1| - 0.00059 19.8 0.2 0.0017 18.3 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|298674350|ref|YP_003726100.1| - 0.0011 19.0 0.1 0.018 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|298674350|ref|YP_003726100.1| - 0.0014 17.8 0.1 0.0026 16.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|298674350|ref|YP_003726100.1| - 0.002 18.4 0.8 0.035 14.3 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|298674350|ref|YP_003726100.1| - 0.0022 17.5 0.4 0.01 15.2 0.1 1.8 1 1 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|298674350|ref|YP_003726100.1| - 0.0024 17.2 0.1 0.034 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|298674350|ref|YP_003726100.1| - 0.0028 18.0 0.5 0.0028 18.0 0.4 1.8 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|298674350|ref|YP_003726100.1| - 0.0039 16.3 0.0 0.0063 15.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|298674350|ref|YP_003726100.1| - 0.0059 16.4 0.7 0.031 14.1 0.5 2.1 1 1 0 1 1 1 1 AAA domain Spore_YhcN_YlaJ PF09580.5 gi|298674350|ref|YP_003726100.1| - 0.0088 16.1 0.3 0.018 15.1 0.1 1.6 2 0 0 2 2 2 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KaiC PF06745.8 gi|298674350|ref|YP_003726100.1| - 0.012 14.7 0.9 2 7.4 0.1 2.6 3 0 0 3 3 3 0 KaiC Arch_ATPase PF01637.13 gi|298674350|ref|YP_003726100.1| - 0.012 15.2 0.0 0.07 12.8 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase SbcCD_C PF13558.1 gi|298674350|ref|YP_003726100.1| - 0.015 15.2 0.0 0.24 11.3 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|298674350|ref|YP_003726100.1| - 0.015 16.0 1.2 0.036 14.8 0.4 1.8 2 1 0 2 2 1 0 AAA domain RNA12 PF10443.4 gi|298674350|ref|YP_003726100.1| - 0.021 13.3 0.0 0.025 13.1 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein MobB PF03205.9 gi|298674350|ref|YP_003726100.1| - 0.028 14.1 0.0 0.065 12.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T4SS-DNA_transf PF02534.9 gi|298674350|ref|YP_003726100.1| - 0.036 12.6 0.0 0.048 12.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer NACHT PF05729.7 gi|298674350|ref|YP_003726100.1| - 0.04 13.5 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|298674350|ref|YP_003726100.1| - 0.042 13.4 0.1 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain PIN_4 PF13638.1 gi|298674350|ref|YP_003726100.1| - 0.047 13.7 0.0 0.068 13.2 0.0 1.3 1 0 0 1 1 1 0 PIN domain Rad17 PF03215.10 gi|298674350|ref|YP_003726100.1| - 0.062 11.9 0.0 0.073 11.7 0.0 1.4 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|298674350|ref|YP_003726100.1| - 0.067 13.1 1.1 0.23 11.4 0.8 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|298674350|ref|YP_003726100.1| - 0.076 12.4 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|298674350|ref|YP_003726100.1| - 0.1 12.5 0.1 0.59 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF2162 PF09930.4 gi|298674351|ref|YP_003726101.1| - 0.0035 16.4 0.7 0.0042 16.2 0.5 1.1 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF1516 PF07457.6 gi|298674351|ref|YP_003726101.1| - 0.32 11.1 3.7 1.2 9.2 2.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1516) SdpI PF13630.1 gi|298674351|ref|YP_003726101.1| - 2.5 7.8 6.0 3.5 7.3 4.2 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Sigma_reg_N PF13800.1 gi|298674351|ref|YP_003726101.1| - 5.4 7.1 7.9 0.63 10.1 0.4 2.1 1 1 1 2 2 2 0 Sigma factor regulator N-terminal HTH_23 PF13384.1 gi|298674352|ref|YP_003726102.1| - 1.2e-06 28.0 0.0 2.2e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|298674352|ref|YP_003726102.1| - 4.9e-06 26.0 0.0 7.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|298674352|ref|YP_003726102.1| - 1.9e-05 24.5 0.0 3.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1 PF03811.8 gi|298674352|ref|YP_003726102.1| - 0.00043 19.6 6.5 0.00082 18.8 4.5 1.5 1 0 0 1 1 1 1 InsA N-terminal domain HTH_Tnp_1 PF01527.15 gi|298674352|ref|YP_003726102.1| - 0.00055 19.8 0.0 0.00085 19.2 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_29 PF13551.1 gi|298674352|ref|YP_003726102.1| - 0.00099 19.2 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix DUF2387 PF09526.5 gi|298674352|ref|YP_003726102.1| - 0.0034 17.2 0.2 0.0071 16.2 0.1 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|298674352|ref|YP_003726102.1| - 0.0036 17.0 4.6 0.0057 16.4 3.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Sigma70_r4_2 PF08281.7 gi|298674352|ref|YP_003726102.1| - 0.0063 15.9 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|298674352|ref|YP_003726102.1| - 0.0067 15.9 0.0 0.022 14.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|298674352|ref|YP_003726102.1| - 0.038 13.9 2.8 0.5 10.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|298674352|ref|YP_003726102.1| - 0.072 12.7 3.1 0.15 11.8 2.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|298674352|ref|YP_003726102.1| - 0.1 12.2 3.6 0.28 10.8 1.8 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.1 gi|298674352|ref|YP_003726102.1| - 0.1 12.4 1.3 0.24 11.2 0.9 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.21 gi|298674352|ref|YP_003726102.1| - 0.24 11.8 1.0 0.24 11.8 0.7 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_4 PF07975.7 gi|298674352|ref|YP_003726102.1| - 0.38 10.7 2.7 0.78 9.8 1.9 1.5 1 0 0 1 1 1 0 TFIIH C1-like domain zf-TFIIB PF13453.1 gi|298674352|ref|YP_003726102.1| - 2.2 7.5 4.4 1.4 8.2 1.4 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-H2C2_2 PF13465.1 gi|298674352|ref|YP_003726102.1| - 3.7 8.0 6.4 1.9 8.9 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain TFIIS_C PF01096.13 gi|298674352|ref|YP_003726102.1| - 3.8 7.2 5.7 5 6.8 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-H2C2_5 PF13909.1 gi|298674352|ref|YP_003726102.1| - 5.6 7.4 7.1 13 6.2 0.3 2.7 3 0 0 3 3 3 0 C2H2-type zinc-finger domain DDE_Tnp_IS1 PF03400.8 gi|298674353|ref|YP_003726103.1| - 9.6e-10 38.6 0.2 1e-09 38.6 0.1 1.0 1 0 0 1 1 1 1 IS1 transposase TM_helix PF05552.7 gi|298674354|ref|YP_003726104.1| - 4.8e-27 93.3 27.9 3.9e-12 45.6 3.8 4.5 4 0 0 4 4 4 3 Conserved TM helix ArsR PF09824.4 gi|298674355|ref|YP_003726105.1| - 0.0034 16.7 0.1 0.0042 16.4 0.1 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator Rrf2 PF02082.15 gi|298674355|ref|YP_003726105.1| - 0.011 15.8 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|298674355|ref|YP_003726105.1| - 0.016 14.8 0.0 0.039 13.6 0.0 1.6 1 1 0 1 1 1 0 HTH domain GntR PF00392.16 gi|298674355|ref|YP_003726105.1| - 0.036 13.4 0.0 0.071 12.5 0.0 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family FrhB_FdhB_C PF04432.8 gi|298674355|ref|YP_003726105.1| - 0.05 13.0 0.3 0.18 11.2 0.0 1.8 1 1 1 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus SpoIIID PF12116.3 gi|298674355|ref|YP_003726105.1| - 0.082 12.8 0.1 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Stage III sporulation protein D MRP-L20 PF12824.2 gi|298674355|ref|YP_003726105.1| - 0.094 12.6 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 Terpene_synth PF01397.16 gi|298674355|ref|YP_003726105.1| - 0.097 12.0 0.1 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Terpene synthase, N-terminal domain HTH_DeoR PF08220.7 gi|298674355|ref|YP_003726105.1| - 0.13 11.7 0.1 0.47 10.0 0.0 1.8 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_AraC PF00165.18 gi|298674355|ref|YP_003726105.1| - 0.14 12.0 0.0 0.65 9.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family DDE_3 PF13358.1 gi|298674356|ref|YP_003726106.1| - 1.3e-22 80.1 0.0 1.6e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|298674356|ref|YP_003726106.1| - 3.3e-06 27.2 0.0 6.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|298674356|ref|YP_003726106.1| - 1.7e-05 24.0 0.0 2.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_29 PF13551.1 gi|298674357|ref|YP_003726107.1| - 1.3e-17 63.9 0.0 1.7e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|298674357|ref|YP_003726107.1| - 1e-12 48.6 0.4 2.2e-12 47.6 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.1 gi|298674357|ref|YP_003726107.1| - 1.4e-10 40.5 0.0 3.9e-10 39.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|298674357|ref|YP_003726107.1| - 8e-08 32.1 1.0 1.3e-06 28.2 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|298674357|ref|YP_003726107.1| - 1e-06 28.1 0.7 1.2e-05 24.8 0.1 2.6 3 0 0 3 3 3 1 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|298674357|ref|YP_003726107.1| - 0.002 18.4 0.1 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 Pox_VLTF3 PF04947.9 gi|298674357|ref|YP_003726107.1| - 0.035 13.6 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Ribosomal_S24e PF01282.14 gi|298674357|ref|YP_003726107.1| - 0.12 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S24e Methyltransf_18 PF12847.2 gi|298674358|ref|YP_003726108.1| - 1.3e-15 57.8 0.0 2.7e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674358|ref|YP_003726108.1| - 5.7e-12 45.8 0.0 1.1e-11 44.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674358|ref|YP_003726108.1| - 1.4e-11 44.1 0.0 1.9e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674358|ref|YP_003726108.1| - 4.1e-11 42.8 0.1 5.6e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674358|ref|YP_003726108.1| - 1.5e-10 41.4 0.0 2.8e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674358|ref|YP_003726108.1| - 1.1e-09 38.6 0.0 2e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298674358|ref|YP_003726108.1| - 2.4e-07 30.1 0.1 3.8e-07 29.4 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|298674358|ref|YP_003726108.1| - 4.4e-06 26.7 0.0 8.1e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|298674358|ref|YP_003726108.1| - 0.00015 21.2 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|298674358|ref|YP_003726108.1| - 0.0003 20.3 0.0 0.00046 19.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|298674358|ref|YP_003726108.1| - 0.0012 18.0 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB DUF1414 PF07208.6 gi|298674358|ref|YP_003726108.1| - 0.013 15.1 0.1 0.069 12.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1414) Bin3 PF06859.7 gi|298674358|ref|YP_003726108.1| - 0.013 15.4 0.0 0.067 13.1 0.0 2.1 1 1 1 2 2 2 0 Bicoid-interacting protein 3 (Bin3) PCMT PF01135.14 gi|298674358|ref|YP_003726108.1| - 0.016 14.7 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CheR PF01739.13 gi|298674358|ref|YP_003726108.1| - 0.021 14.0 0.0 0.051 12.8 0.0 1.6 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain UPF0020 PF01170.13 gi|298674358|ref|YP_003726108.1| - 0.03 13.9 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PyrI_C PF02748.10 gi|298674359|ref|YP_003726109.1| - 0.001 18.4 0.6 0.0021 17.4 0.4 1.6 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-FCS PF06467.9 gi|298674359|ref|YP_003726109.1| - 0.0028 17.2 7.5 0.19 11.3 5.2 2.3 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zinc_ribbon_5 PF13719.1 gi|298674359|ref|YP_003726109.1| - 0.024 14.2 1.9 0.024 14.2 0.3 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|298674359|ref|YP_003726109.1| - 0.098 12.4 1.0 0.19 11.5 0.7 1.6 1 1 0 1 1 1 0 BED zinc finger zinc_ribbon_4 PF13717.1 gi|298674359|ref|YP_003726109.1| - 0.11 12.2 0.4 0.11 12.2 0.3 1.7 2 0 0 2 2 2 0 zinc-ribbon domain SNARE_assoc PF09335.6 gi|298674360|ref|YP_003726110.1| - 9.8e-07 29.0 12.6 8.6e-06 25.9 8.9 2.2 1 1 0 1 1 1 1 SNARE associated Golgi protein TPR_11 PF13414.1 gi|298674361|ref|YP_003726111.1| - 8e-21 73.4 8.2 1.2e-10 40.8 0.4 2.9 1 1 2 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|298674361|ref|YP_003726111.1| - 6.7e-17 59.9 5.3 1.4e-05 24.5 0.3 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|298674361|ref|YP_003726111.1| - 2.4e-16 59.8 0.9 4.8e-09 36.4 0.1 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|298674361|ref|YP_003726111.1| - 1.9e-15 57.0 0.0 1.3e-06 28.8 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|298674361|ref|YP_003726111.1| - 1.3e-14 53.0 6.3 8.2e-05 22.0 0.3 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|298674361|ref|YP_003726111.1| - 6.8e-14 50.8 3.3 3.5e-05 23.6 0.0 4.0 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298674361|ref|YP_003726111.1| - 2.3e-11 43.2 0.0 0.17 12.5 0.0 4.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|298674361|ref|YP_003726111.1| - 8.1e-11 40.9 7.0 0.016 14.9 0.0 4.1 2 2 2 4 4 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|298674361|ref|YP_003726111.1| - 3.4e-10 39.9 3.7 6.9e-09 35.7 0.3 2.4 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|298674361|ref|YP_003726111.1| - 3.8e-10 39.4 0.1 8.3e-05 22.3 0.0 3.0 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|298674361|ref|YP_003726111.1| - 1.3e-09 37.7 0.6 0.00015 21.6 0.0 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|298674361|ref|YP_003726111.1| - 1.9e-09 37.2 5.6 0.0058 16.4 0.1 4.2 2 1 2 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat TPR_6 PF13174.1 gi|298674361|ref|YP_003726111.1| - 9.8e-06 25.6 0.5 9.4 6.9 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat NARP1 PF12569.3 gi|298674361|ref|YP_003726111.1| - 0.0011 17.8 2.3 0.0094 14.7 0.4 2.1 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|298674361|ref|YP_003726111.1| - 0.012 14.7 0.1 0.62 9.0 0.0 2.0 1 1 0 1 1 1 0 Tetratricopeptide repeat Cas_Cas02710 PF09670.5 gi|298674361|ref|YP_003726111.1| - 0.014 14.0 1.3 0.042 12.4 0.1 2.0 1 1 0 2 2 2 0 CRISPR-associated protein (Cas_Cas02710) Coatomer_E PF04733.9 gi|298674361|ref|YP_003726111.1| - 0.034 13.3 0.2 0.062 12.4 0.1 1.5 1 1 1 2 2 2 0 Coatomer epsilon subunit SHNi-TPR PF10516.4 gi|298674361|ref|YP_003726111.1| - 0.046 12.9 6.6 2.7 7.3 0.2 3.1 3 0 0 3 3 3 0 SHNi-TPR DUF3808 PF10300.4 gi|298674361|ref|YP_003726111.1| - 0.085 11.4 0.1 0.094 11.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3808) TPR_10 PF13374.1 gi|298674361|ref|YP_003726111.1| - 0.21 11.5 0.6 19 5.3 0.0 3.7 5 0 0 5 5 4 0 Tetratricopeptide repeat UVR PF02151.14 gi|298674361|ref|YP_003726111.1| - 2.2 7.9 4.9 1.1 8.8 0.1 2.8 3 0 0 3 3 3 0 UvrB/uvrC motif DUF1699 PF08004.6 gi|298674362|ref|YP_003726112.1| - 5.9e-61 203.7 0.9 6.7e-61 203.5 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Metalloenzyme PF01676.13 gi|298674362|ref|YP_003726112.1| - 0.0043 16.4 0.1 0.0049 16.2 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF1884 PF08967.5 gi|298674362|ref|YP_003726112.1| - 0.12 12.4 0.2 0.26 11.3 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1884) Voldacs PF03517.8 gi|298674362|ref|YP_003726112.1| - 0.15 11.9 0.6 0.23 11.2 0.4 1.6 1 1 0 1 1 1 0 Regulator of volume decrease after cellular swelling eIF-1a PF01176.14 gi|298674363|ref|YP_003726113.1| - 2.2e-20 71.8 0.2 2.9e-20 71.4 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF732 PF05305.9 gi|298674364|ref|YP_003726114.1| - 0.065 13.3 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF732) NnrU PF07298.6 gi|298674365|ref|YP_003726115.1| - 7.9e-07 28.6 5.6 1.3e-06 27.9 3.9 1.4 1 1 0 1 1 1 1 NnrU protein PEMT PF04191.8 gi|298674365|ref|YP_003726115.1| - 8.2e-05 22.6 1.8 0.00021 21.3 0.1 2.2 2 0 0 2 2 2 1 Phospholipid methyltransferase CbbQ_C PF08406.5 gi|298674366|ref|YP_003726116.1| - 2.8e-33 113.7 0.1 9.8e-33 112.0 0.0 1.9 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal AAA_5 PF07728.9 gi|298674366|ref|YP_003726116.1| - 4.3e-31 107.5 0.0 5.8e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|298674366|ref|YP_003726116.1| - 0.0036 17.4 0.0 0.0057 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|298674366|ref|YP_003726116.1| - 0.004 16.7 0.0 0.0062 16.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|298674366|ref|YP_003726116.1| - 0.0044 16.9 0.0 0.0089 15.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|298674366|ref|YP_003726116.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.24 gi|298674366|ref|YP_003726116.1| - 0.012 15.8 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|298674366|ref|YP_003726116.1| - 0.035 14.2 0.0 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase VWA_2 PF13519.1 gi|298674367|ref|YP_003726117.1| - 4.9e-08 33.2 0.0 9.1e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|298674367|ref|YP_003726117.1| - 5e-07 29.6 0.0 2.6e-06 27.2 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain EamA PF00892.15 gi|298674368|ref|YP_003726118.1| - 5.6e-18 65.2 41.8 6.8e-09 35.8 13.2 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|298674368|ref|YP_003726118.1| - 2.1e-05 24.7 7.0 2.1e-05 24.7 4.9 4.0 1 1 3 4 4 4 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|298674368|ref|YP_003726118.1| - 0.065 13.0 13.0 0.096 12.5 0.3 3.3 2 1 1 3 3 3 0 Uncharacterised protein family UPF0546 AAA PF00004.24 gi|298674369|ref|YP_003726119.1| - 3.5e-43 146.9 1.6 1.2e-42 145.2 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|298674369|ref|YP_003726119.1| - 1e-06 28.4 0.0 3.9e-06 26.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|298674369|ref|YP_003726119.1| - 1.3e-05 24.3 0.0 3.9e-05 22.8 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|298674369|ref|YP_003726119.1| - 1.5e-05 25.0 0.0 0.00029 20.8 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|298674369|ref|YP_003726119.1| - 1.6e-05 25.0 0.0 0.00035 20.7 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|298674369|ref|YP_003726119.1| - 3.7e-05 24.5 0.2 0.00027 21.7 0.0 2.4 2 2 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|298674369|ref|YP_003726119.1| - 0.00015 21.6 0.0 0.00015 21.6 0.0 2.1 3 0 0 3 3 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|298674369|ref|YP_003726119.1| - 0.00018 21.3 0.0 0.00054 19.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|298674369|ref|YP_003726119.1| - 0.0012 18.5 0.1 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|298674369|ref|YP_003726119.1| - 0.0021 17.4 0.0 0.0045 16.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|298674369|ref|YP_003726119.1| - 0.0027 16.8 0.1 0.0082 15.2 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin Sigma54_activ_2 PF14532.1 gi|298674369|ref|YP_003726119.1| - 0.0033 17.4 0.0 0.01 15.8 0.0 1.8 2 0 0 2 2 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|298674369|ref|YP_003726119.1| - 0.0041 16.9 0.0 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|298674369|ref|YP_003726119.1| - 0.006 16.7 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 RNA helicase Mg_chelatase PF01078.16 gi|298674369|ref|YP_003726119.1| - 0.0071 15.5 0.0 0.016 14.3 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|298674369|ref|YP_003726119.1| - 0.0088 16.3 1.6 0.024 14.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|298674369|ref|YP_003726119.1| - 0.0092 15.1 1.1 0.045 12.8 0.0 2.4 3 0 0 3 3 3 1 KaiC DUF3450 PF11932.3 gi|298674369|ref|YP_003726119.1| - 0.0094 15.2 1.4 0.015 14.5 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Laminin_I PF06008.9 gi|298674369|ref|YP_003726119.1| - 0.0097 15.2 3.9 0.16 11.2 2.7 2.1 2 0 0 2 2 2 1 Laminin Domain I TIP49 PF06068.8 gi|298674369|ref|YP_003726119.1| - 0.0098 14.6 0.0 0.021 13.5 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_24 PF13479.1 gi|298674369|ref|YP_003726119.1| - 0.028 13.9 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain ADK PF00406.17 gi|298674369|ref|YP_003726119.1| - 0.028 14.2 1.4 3.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Adenylate kinase Sigma54_activat PF00158.21 gi|298674369|ref|YP_003726119.1| - 0.032 13.6 0.0 0.23 10.8 0.0 2.3 3 0 0 3 3 3 0 Sigma-54 interaction domain T2SE PF00437.15 gi|298674369|ref|YP_003726119.1| - 0.047 12.5 0.5 0.24 10.2 0.3 2.0 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_3 PF07726.6 gi|298674369|ref|YP_003726119.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APG6 PF04111.7 gi|298674369|ref|YP_003726119.1| - 0.057 12.4 1.8 0.08 11.9 1.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NACHT PF05729.7 gi|298674369|ref|YP_003726119.1| - 0.07 12.7 0.0 0.48 10.0 0.0 2.2 1 1 1 2 2 2 0 NACHT domain CPT PF07931.7 gi|298674369|ref|YP_003726119.1| - 0.078 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein NTPase_1 PF03266.10 gi|298674369|ref|YP_003726119.1| - 0.091 12.4 0.7 0.69 9.5 0.0 2.5 2 1 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|298674369|ref|YP_003726119.1| - 0.093 12.1 0.0 0.26 10.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|298674369|ref|YP_003726119.1| - 0.097 12.9 7.6 3.8 7.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain Tup_N PF08581.5 gi|298674369|ref|YP_003726119.1| - 0.11 12.7 3.5 0.25 11.5 2.4 1.6 1 0 0 1 1 1 0 Tup N-terminal DUF812 PF05667.6 gi|298674369|ref|YP_003726119.1| - 0.12 10.8 3.7 0.16 10.4 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) AAA_13 PF13166.1 gi|298674369|ref|YP_003726119.1| - 0.12 10.7 6.9 0.77 8.1 3.7 2.0 2 0 0 2 2 2 0 AAA domain GLE1 PF07817.8 gi|298674369|ref|YP_003726119.1| - 0.16 10.8 0.5 0.28 10.0 0.3 1.3 1 0 0 1 1 1 0 GLE1-like protein NYD-SP28_assoc PF14775.1 gi|298674369|ref|YP_003726119.1| - 0.61 9.8 3.0 0.67 9.6 0.1 2.3 2 0 0 2 2 2 0 Sperm tail C-terminal domain Reo_sigmaC PF04582.7 gi|298674369|ref|YP_003726119.1| - 1.1 8.3 7.0 1 8.4 4.0 1.5 1 1 1 2 2 2 0 Reovirus sigma C capsid protein TMF_DNA_bd PF12329.3 gi|298674369|ref|YP_003726119.1| - 1.1 9.0 8.7 3.5 7.4 5.6 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Corona_S2 PF01601.11 gi|298674369|ref|YP_003726119.1| - 3.3 5.6 5.3 5.3 5.0 3.7 1.2 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein Penicillinase_R PF03965.11 gi|298674370|ref|YP_003726120.1| - 0.00018 21.5 0.9 0.00028 20.9 0.0 1.7 2 0 0 2 2 2 1 Penicillinase repressor PAT1 PF09770.4 gi|298674370|ref|YP_003726120.1| - 0.01 14.1 17.2 0.011 14.0 11.9 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 TFIIA PF03153.8 gi|298674370|ref|YP_003726120.1| - 0.21 11.4 11.0 0.25 11.2 7.6 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF131 PF01998.12 gi|298674371|ref|YP_003726121.1| - 1.4e-12 46.7 12.8 1.5e-12 46.6 8.2 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 Cortexin PF11057.3 gi|298674371|ref|YP_003726121.1| - 0.85 9.2 2.6 10 5.7 0.1 2.1 2 0 0 2 2 2 0 Cortexin of kidney DUF2614 PF11023.3 gi|298674371|ref|YP_003726121.1| - 6.1 6.6 7.3 12 5.7 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2614) DUF131 PF01998.12 gi|298674373|ref|YP_003726123.1| - 3.4e-19 67.9 0.9 3.4e-19 67.9 0.6 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 OAD_gamma PF04277.8 gi|298674373|ref|YP_003726123.1| - 0.0021 18.4 1.8 0.31 11.4 0.0 2.2 2 0 0 2 2 2 1 Oxaloacetate decarboxylase, gamma chain DUF4097 PF13349.1 gi|298674373|ref|YP_003726123.1| - 0.0052 16.3 2.5 0.021 14.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4097) SdpI PF13630.1 gi|298674373|ref|YP_003726123.1| - 0.0065 16.1 7.6 0.2 11.4 0.2 2.2 2 0 0 2 2 2 2 SdpI/YhfL protein family CD20 PF04103.10 gi|298674373|ref|YP_003726123.1| - 0.0079 16.1 0.9 0.1 12.5 0.0 2.1 2 0 0 2 2 2 1 CD20-like family DUF4064 PF13273.1 gi|298674373|ref|YP_003726123.1| - 0.013 15.5 6.4 0.088 12.9 4.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) DUF4293 PF14126.1 gi|298674373|ref|YP_003726123.1| - 0.015 15.2 0.1 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) SUR7 PF06687.7 gi|298674373|ref|YP_003726123.1| - 0.023 14.2 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 SUR7/PalI family Choline_transpo PF04515.7 gi|298674373|ref|YP_003726123.1| - 0.032 12.9 0.1 0.04 12.6 0.0 1.1 1 0 0 1 1 1 0 Plasma-membrane choline transporter CcmE PF03100.10 gi|298674373|ref|YP_003726123.1| - 0.033 13.7 0.1 0.17 11.4 0.0 1.8 1 1 0 2 2 2 0 CcmE PMP22_Claudin PF00822.15 gi|298674373|ref|YP_003726123.1| - 0.036 13.7 2.7 2 8.0 0.3 2.1 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin family Baculo_11_kDa PF06143.6 gi|298674373|ref|YP_003726123.1| - 0.063 12.6 1.1 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family Tetraspannin PF00335.15 gi|298674373|ref|YP_003726123.1| - 0.07 12.3 1.4 0.41 9.8 0.0 2.0 2 0 0 2 2 2 0 Tetraspanin family DUF4363 PF14276.1 gi|298674373|ref|YP_003726123.1| - 0.093 12.4 0.1 0.093 12.4 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) OSTbeta PF15048.1 gi|298674373|ref|YP_003726123.1| - 0.1 12.7 0.1 0.26 11.3 0.0 1.6 2 0 0 2 2 2 0 Organic solute transporter subunit beta protein DUF2659 PF10858.3 gi|298674373|ref|YP_003726123.1| - 0.1 11.9 0.6 0.15 11.4 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2659) EphA2_TM PF14575.1 gi|298674373|ref|YP_003726123.1| - 0.14 12.6 1.0 0.19 12.1 0.0 1.7 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain DUF1980 PF09323.5 gi|298674373|ref|YP_003726123.1| - 0.16 11.7 0.1 0.16 11.7 0.0 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF1980) DUF3139 PF11337.3 gi|298674373|ref|YP_003726123.1| - 0.28 11.4 4.4 0.29 11.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Tic20 PF09685.5 gi|298674373|ref|YP_003726123.1| - 0.43 10.5 6.2 0.4 10.6 0.2 2.1 2 0 0 2 2 2 0 Tic20-like protein RDD PF06271.7 gi|298674373|ref|YP_003726123.1| - 0.63 9.9 3.7 2.2 8.1 2.6 1.7 1 1 0 1 1 1 0 RDD family DUF2207 PF09972.4 gi|298674373|ref|YP_003726123.1| - 3.4 6.1 6.2 27 3.1 4.3 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3098 PF11297.3 gi|298674373|ref|YP_003726123.1| - 4.7 6.9 10.8 0.44 10.2 0.7 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3098) BTP PF05232.7 gi|298674373|ref|YP_003726123.1| - 5.2 6.8 6.9 0.33 10.7 0.4 2.0 2 0 0 2 2 2 0 Bacterial Transmembrane Pair family UvrB PF12344.3 gi|298674374|ref|YP_003726124.1| - 5.8e-22 76.9 1.0 1.7e-21 75.4 0.7 1.9 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|298674374|ref|YP_003726124.1| - 2.1e-15 56.3 0.0 4.7e-15 55.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|298674374|ref|YP_003726124.1| - 2.4e-15 56.8 0.0 1.1e-13 51.4 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|298674374|ref|YP_003726124.1| - 2.9e-10 39.3 4.9 2.9e-10 39.3 3.4 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif DEAD PF00270.24 gi|298674374|ref|YP_003726124.1| - 0.00013 21.4 0.0 0.0011 18.5 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.1 gi|298674374|ref|YP_003726124.1| - 0.0066 16.1 0.0 0.032 13.9 0.0 2.3 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain Kinesin PF00225.18 gi|298674374|ref|YP_003726124.1| - 0.011 14.4 0.1 0.019 13.7 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain AAA_30 PF13604.1 gi|298674374|ref|YP_003726124.1| - 0.028 14.0 0.0 0.9 9.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|298674374|ref|YP_003726124.1| - 0.08 12.7 0.1 0.08 12.7 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_19 PF13245.1 gi|298674374|ref|YP_003726124.1| - 0.081 12.6 0.1 0.5 10.1 0.0 2.2 3 0 0 3 3 3 0 Part of AAA domain Rubrerythrin PF02915.12 gi|298674375|ref|YP_003726125.1| - 7.9e-09 35.9 2.3 8.9e-09 35.7 1.6 1.1 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|298674375|ref|YP_003726125.1| - 1.3e-05 25.4 1.0 1.8e-05 24.9 0.4 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|298674375|ref|YP_003726125.1| - 0.0021 17.9 0.1 0.0024 17.8 0.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain COQ7 PF03232.8 gi|298674375|ref|YP_003726125.1| - 0.034 13.6 0.5 0.054 12.9 0.1 1.5 1 1 1 2 2 2 0 Ubiquinone biosynthesis protein COQ7 DUF3231 PF11553.3 gi|298674375|ref|YP_003726125.1| - 0.04 13.4 0.5 0.042 13.3 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3231) DUF2606 PF10794.4 gi|298674375|ref|YP_003726125.1| - 0.1 12.0 0.3 0.12 11.7 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2606) HAD_2 PF13419.1 gi|298674376|ref|YP_003726126.1| - 3.9e-26 92.3 0.0 4.7e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|298674376|ref|YP_003726126.1| - 1.2e-08 34.5 0.0 2.5e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|298674376|ref|YP_003726126.1| - 1.2e-07 32.3 0.0 2.6e-06 28.0 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|298674376|ref|YP_003726126.1| - 0.00015 21.9 0.0 0.00017 21.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|298674376|ref|YP_003726126.1| - 0.0016 17.9 0.8 0.0035 16.8 0.1 1.8 2 1 0 2 2 2 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Beta-Casp PF10996.3 gi|298674377|ref|YP_003726127.1| - 1.7e-35 121.7 0.0 4.5e-35 120.3 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|298674377|ref|YP_003726127.1| - 1.4e-23 83.5 0.4 2.4e-23 82.7 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|298674377|ref|YP_003726127.1| - 7e-12 44.9 0.0 1.5e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|298674377|ref|YP_003726127.1| - 1.6e-08 34.3 0.1 3.5e-08 33.2 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|298674377|ref|YP_003726127.1| - 3.2e-06 26.5 1.1 3.4e-05 23.3 0.1 3.0 2 1 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|298674377|ref|YP_003726127.1| - 4.3e-05 23.0 2.2 0.0014 18.2 0.4 2.7 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|298674377|ref|YP_003726127.1| - 0.00032 20.4 0.0 0.0014 18.3 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|298674377|ref|YP_003726127.1| - 0.0051 16.4 0.0 0.016 14.8 0.0 1.9 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|298674377|ref|YP_003726127.1| - 0.0085 15.7 1.0 0.055 13.1 0.4 2.5 2 0 0 2 2 2 1 KH domain Proteasome PF00227.21 gi|298674378|ref|YP_003726128.1| - 4e-56 189.3 0.2 4.6e-56 189.1 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit HD PF01966.17 gi|298674379|ref|YP_003726129.1| - 3.2e-16 59.4 0.4 4.2e-16 59.0 0.3 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|298674379|ref|YP_003726129.1| - 0.00094 18.5 0.0 0.007 15.6 0.0 1.9 1 1 1 2 2 2 1 HDOD domain TFIIE_alpha PF02002.12 gi|298674380|ref|YP_003726130.1| - 1.4e-17 63.1 2.5 1.5e-17 63.0 0.7 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Rad50_zn_hook PF04423.9 gi|298674380|ref|YP_003726130.1| - 0.012 15.0 2.9 0.033 13.6 0.1 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif RepL PF05732.6 gi|298674380|ref|YP_003726130.1| - 0.058 12.5 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TF_Zn_Ribbon PF08271.7 gi|298674380|ref|YP_003726130.1| - 0.059 12.7 0.6 0.14 11.4 0.4 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding XhlA PF10779.4 gi|298674380|ref|YP_003726130.1| - 0.068 13.0 3.6 0.65 9.9 2.5 2.2 1 1 0 1 1 1 0 Haemolysin XhlA ATP-grasp_3 PF02655.9 gi|298674381|ref|YP_003726131.1| - 1.3e-41 142.1 0.0 2.1e-41 141.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|298674381|ref|YP_003726131.1| - 5.2e-17 62.1 0.0 8.5e-17 61.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298674381|ref|YP_003726131.1| - 7.6e-15 54.4 0.0 1.8e-14 53.2 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|298674381|ref|YP_003726131.1| - 5.5e-07 29.0 0.0 3.1e-06 26.6 0.0 2.1 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|298674381|ref|YP_003726131.1| - 9.4e-07 28.4 0.0 3.9e-06 26.4 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|298674381|ref|YP_003726131.1| - 0.00014 21.3 0.0 0.00058 19.3 0.0 1.9 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.1 gi|298674381|ref|YP_003726131.1| - 0.0015 17.6 0.1 0.042 12.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp N-Term_TEN PF11474.3 gi|298674381|ref|YP_003726131.1| - 0.082 12.2 0.9 1 8.6 0.1 2.2 2 0 0 2 2 2 0 Telomerase reverse transcriptase TEN domain Rep_2 PF01719.12 gi|298674381|ref|YP_003726131.1| - 0.34 10.4 3.0 1.7 8.0 0.2 2.3 1 1 1 2 2 2 0 Plasmid replication protein NMD3 PF04981.8 gi|298674382|ref|YP_003726132.1| - 4e-60 202.8 1.1 5.1e-60 202.5 0.7 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.11 gi|298674382|ref|YP_003726132.1| - 0.0035 17.1 2.6 0.051 13.4 0.0 3.0 3 1 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.1 gi|298674382|ref|YP_003726132.1| - 0.0085 15.2 4.6 0.69 9.2 0.8 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298674382|ref|YP_003726132.1| - 0.02 14.3 8.4 1.1 8.8 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|298674382|ref|YP_003726132.1| - 0.12 11.8 4.9 1.1 8.7 0.3 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|298674382|ref|YP_003726132.1| - 0.36 10.7 4.9 10 6.0 0.2 2.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.10 gi|298674382|ref|YP_003726132.1| - 1.6 8.2 7.5 8.3 5.9 0.2 2.6 2 0 0 2 2 2 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|298674382|ref|YP_003726132.1| - 1.9 7.8 8.0 25 4.3 3.1 2.9 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|298674382|ref|YP_003726132.1| - 2.4 8.0 9.2 4.1 7.2 1.2 2.9 2 1 0 3 3 3 0 Double zinc ribbon GFA PF04828.9 gi|298674382|ref|YP_003726132.1| - 2.9 7.9 5.1 3.6 7.5 0.0 3.2 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF362 PF04015.7 gi|298674384|ref|YP_003726134.1| - 1.6e-27 96.3 0.0 7.2e-27 94.1 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|298674384|ref|YP_003726134.1| - 9.7e-09 34.4 11.5 0.00026 20.4 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674384|ref|YP_003726134.1| - 1.3e-07 31.1 6.9 0.0029 17.4 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298674384|ref|YP_003726134.1| - 1.5e-07 31.7 21.3 8.4e-07 29.2 5.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674384|ref|YP_003726134.1| - 1.7e-06 27.7 7.9 3.1e-06 26.8 5.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674384|ref|YP_003726134.1| - 5.5e-05 23.3 19.3 8.8e-05 22.6 5.5 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674384|ref|YP_003726134.1| - 6.2e-05 23.6 5.1 0.21 12.3 0.1 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|298674384|ref|YP_003726134.1| - 9e-05 22.1 10.4 0.01 15.7 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674384|ref|YP_003726134.1| - 0.00011 21.9 9.3 0.00027 20.7 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674384|ref|YP_003726134.1| - 0.0035 17.5 8.0 0.43 11.0 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|298674384|ref|YP_003726134.1| - 0.005 16.6 3.9 0.01 15.6 2.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298674384|ref|YP_003726134.1| - 0.013 15.5 6.2 0.029 14.4 4.3 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF2088 PF09861.4 gi|298674384|ref|YP_003726134.1| - 0.029 13.3 0.1 0.048 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) Fer4_15 PF13459.1 gi|298674384|ref|YP_003726134.1| - 0.17 12.5 10.0 0.46 11.0 0.4 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|298674384|ref|YP_003726134.1| - 0.44 10.9 8.0 2.2 8.6 1.7 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298674384|ref|YP_003726134.1| - 0.84 10.3 12.4 1.1 9.9 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|298674384|ref|YP_003726134.1| - 4.2 7.8 8.6 27 5.2 2.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CdhD PF03599.11 gi|298674385|ref|YP_003726135.1| - 1.3e-146 488.0 0.0 1.6e-146 487.7 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|298674385|ref|YP_003726135.1| - 8e-15 54.1 0.4 1.4e-14 53.3 0.3 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster AP_endonuc_2 PF01261.19 gi|298674385|ref|YP_003726135.1| - 0.032 13.5 0.0 0.071 12.3 0.0 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel CdhD PF03599.11 gi|298674386|ref|YP_003726136.1| - 3.2e-86 289.2 1.2 1.3e-78 264.1 0.0 3.1 1 1 2 3 3 3 3 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.17 gi|298674386|ref|YP_003726136.1| - 0.018 14.4 0.5 0.35 10.1 0.3 2.6 2 1 1 3 3 3 0 Pterin binding enzyme His_biosynth PF00977.16 gi|298674386|ref|YP_003726136.1| - 0.043 13.0 0.0 0.071 12.3 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein CbiA PF01656.18 gi|298674387|ref|YP_003726137.1| - 4e-31 107.9 0.2 5.6e-31 107.4 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|298674387|ref|YP_003726137.1| - 7.6e-10 38.4 0.0 7.2e-05 22.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|298674387|ref|YP_003726137.1| - 3.1e-09 36.3 1.5 1.4e-08 34.1 0.1 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|298674387|ref|YP_003726137.1| - 8.5e-07 29.0 0.1 1.4e-05 25.0 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298674387|ref|YP_003726137.1| - 5.8e-05 23.1 0.0 0.00074 19.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain YhjQ PF06564.7 gi|298674387|ref|YP_003726137.1| - 8.7e-05 21.9 0.0 0.00059 19.2 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein Toprim PF01751.17 gi|298674387|ref|YP_003726137.1| - 0.0012 18.7 0.1 0.38 10.7 0.0 2.5 2 1 0 2 2 2 1 Toprim domain AAA_17 PF13207.1 gi|298674387|ref|YP_003726137.1| - 0.0012 19.6 0.2 0.006 17.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|298674387|ref|YP_003726137.1| - 0.0014 18.1 1.2 1 8.7 0.1 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|298674387|ref|YP_003726137.1| - 0.0027 17.8 0.0 0.018 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|298674387|ref|YP_003726137.1| - 0.0047 16.6 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|298674387|ref|YP_003726137.1| - 0.0088 15.6 0.4 0.045 13.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|298674387|ref|YP_003726137.1| - 0.016 14.1 0.2 0.029 13.2 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_26 PF13500.1 gi|298674387|ref|YP_003726137.1| - 0.02 14.5 1.2 2.3 7.7 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|298674387|ref|YP_003726137.1| - 0.021 14.5 0.1 0.039 13.7 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain DUF2075 PF09848.4 gi|298674387|ref|YP_003726137.1| - 0.023 13.6 0.0 0.028 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MipZ PF09140.6 gi|298674387|ref|YP_003726137.1| - 0.024 13.6 1.0 0.93 8.5 0.1 2.5 2 1 0 2 2 2 0 ATPase MipZ MRP-S22 PF10245.4 gi|298674387|ref|YP_003726137.1| - 0.025 13.9 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S22 AAA_18 PF13238.1 gi|298674387|ref|YP_003726137.1| - 0.029 14.6 0.2 0.048 13.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|298674387|ref|YP_003726137.1| - 0.031 14.0 0.2 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 NTPase_1 PF03266.10 gi|298674387|ref|YP_003726137.1| - 0.036 13.7 2.1 3.1 7.5 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|298674387|ref|YP_003726137.1| - 0.039 13.3 1.2 0.35 10.2 0.2 2.5 2 1 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|298674387|ref|YP_003726137.1| - 0.049 12.5 0.0 0.073 11.9 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase Toprim_4 PF13662.1 gi|298674387|ref|YP_003726137.1| - 0.056 13.4 0.1 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Toprim domain APS_kinase PF01583.15 gi|298674387|ref|YP_003726137.1| - 0.063 12.9 0.1 0.16 11.5 0.0 1.7 2 1 0 2 2 2 0 Adenylylsulphate kinase CdhC PF03598.10 gi|298674388|ref|YP_003726138.1| - 4.9e-184 611.5 0.0 5.9e-184 611.3 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit Peptidase_S21 PF00716.12 gi|298674388|ref|YP_003726138.1| - 0.069 12.4 0.3 0.1 11.9 0.2 1.1 1 0 0 1 1 1 0 Assemblin (Peptidase family S21) CO_dh PF02552.11 gi|298674389|ref|YP_003726139.1| - 2.9e-33 114.8 0.1 3.5e-33 114.5 0.1 1.0 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.17 gi|298674389|ref|YP_003726139.1| - 2.4e-05 24.1 0.0 4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.15 gi|298674390|ref|YP_003726140.1| - 4.3e-111 371.8 0.1 3.6e-91 306.1 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_10 PF13237.1 gi|298674390|ref|YP_003726140.1| - 2.5e-10 39.9 21.6 1.3e-07 31.2 8.4 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298674390|ref|YP_003726140.1| - 3.1e-09 36.6 19.5 2.2e-07 30.7 7.3 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298674390|ref|YP_003726140.1| - 1.8e-08 33.6 23.2 4.2e-06 26.1 2.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674390|ref|YP_003726140.1| - 2.4e-08 34.2 9.7 0.00024 21.4 0.7 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674390|ref|YP_003726140.1| - 5.6e-08 33.0 22.7 8.4e-07 29.2 9.0 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674390|ref|YP_003726140.1| - 6.8e-08 32.6 10.4 6.8e-08 32.6 7.2 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674390|ref|YP_003726140.1| - 5.4e-06 27.0 5.9 0.048 14.4 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|298674390|ref|YP_003726140.1| - 1.3e-05 24.9 11.4 1.3e-05 24.9 7.9 2.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674390|ref|YP_003726140.1| - 2.9e-05 23.7 12.8 0.00026 20.7 2.3 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298674390|ref|YP_003726140.1| - 4.4e-05 23.4 27.1 0.0017 18.4 1.7 3.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|298674390|ref|YP_003726140.1| - 0.00011 21.9 1.9 0.00011 21.9 1.3 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298674390|ref|YP_003726140.1| - 0.00026 21.2 12.1 0.00026 21.2 8.4 3.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298674390|ref|YP_003726140.1| - 0.0038 17.7 6.3 0.046 14.2 0.2 2.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298674390|ref|YP_003726140.1| - 0.0053 17.2 4.5 0.0053 17.2 3.1 3.6 3 0 0 3 3 2 2 4Fe-4S binding domain Ribosomal_S2 PF00318.15 gi|298674390|ref|YP_003726140.1| - 0.017 14.3 0.1 0.035 13.3 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S2 Fer4_13 PF13370.1 gi|298674390|ref|YP_003726140.1| - 0.047 14.0 9.2 0.44 10.9 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF4287 PF14117.1 gi|298674390|ref|YP_003726140.1| - 0.055 13.1 0.1 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4287) Resolvase PF00239.16 gi|298674391|ref|YP_003726141.1| - 7e-17 61.6 0.2 8.4e-17 61.3 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|298674391|ref|YP_003726141.1| - 0.0014 18.8 0.0 0.0027 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|298674391|ref|YP_003726141.1| - 0.0051 16.5 0.2 0.011 15.4 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein Trp_syntA PF00290.15 gi|298674391|ref|YP_003726141.1| - 0.027 12.9 0.0 0.04 12.4 0.0 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain HTH_7 PF02796.10 gi|298674391|ref|YP_003726141.1| - 0.068 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Chordopox_A13L PF05961.6 gi|298674391|ref|YP_003726141.1| - 0.35 10.8 3.1 0.49 10.3 0.2 2.3 2 0 0 2 2 2 0 Chordopoxvirus A13L protein OrfB_IS605 PF01385.14 gi|298674392|ref|YP_003726142.1| - 2.9e-58 196.9 8.7 4.8e-58 196.2 6.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674392|ref|YP_003726142.1| - 3.2e-11 42.7 0.0 8e-11 41.4 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glyco_hydro_97 PF10566.4 gi|298674392|ref|YP_003726142.1| - 0.0046 16.0 0.4 0.0085 15.2 0.3 1.5 1 0 0 1 1 1 1 Glycoside hydrolase 97 Muted PF14942.1 gi|298674392|ref|YP_003726142.1| - 0.034 14.0 0.3 0.076 12.8 0.0 1.7 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Dynamin_N PF00350.18 gi|298674392|ref|YP_003726142.1| - 0.035 13.9 0.1 0.088 12.6 0.1 1.6 1 0 0 1 1 1 0 Dynamin family DUF479 PF04336.7 gi|298674392|ref|YP_003726142.1| - 0.11 12.5 1.4 0.45 10.6 0.2 2.5 2 2 1 3 3 3 0 Protein of unknown function, DUF479 Rhomboid PF01694.17 gi|298674393|ref|YP_003726143.1| - 6.5e-31 107.3 19.6 6.5e-31 107.3 13.6 1.9 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|298674393|ref|YP_003726143.1| - 9.3e-12 44.6 9.1 1.4e-11 44.0 6.3 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|298674393|ref|YP_003726143.1| - 1e-06 28.9 2.1 1e-06 28.9 1.4 2.9 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|298674393|ref|YP_003726143.1| - 0.028 14.3 2.0 0.042 13.7 1.4 1.3 1 0 0 1 1 1 0 FYVE zinc finger Flavi_M PF01004.14 gi|298674393|ref|YP_003726143.1| - 0.043 13.2 0.1 0.12 11.8 0.0 1.7 1 0 0 1 1 1 0 Flavivirus envelope glycoprotein M Antimicrobial_2 PF08023.7 gi|298674393|ref|YP_003726143.1| - 0.087 13.1 0.6 0.18 12.1 0.4 1.5 1 0 0 1 1 1 0 Frog antimicrobial peptide zf-UBP PF02148.14 gi|298674393|ref|YP_003726143.1| - 0.17 12.0 2.0 0.3 11.2 1.4 1.4 1 0 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein ATPase_gene1 PF09527.5 gi|298674393|ref|YP_003726143.1| - 0.19 11.5 0.2 0.19 11.5 0.1 4.2 4 2 1 5 5 5 0 Putative F0F1-ATPase subunit (ATPase_gene1) MFS_1 PF07690.11 gi|298674393|ref|YP_003726143.1| - 2.7 6.6 28.1 0.92 8.1 12.2 2.7 1 1 1 2 2 2 0 Major Facilitator Superfamily Tnp_zf-ribbon_2 PF13842.1 gi|298674393|ref|YP_003726143.1| - 3.7 8.0 6.9 6.1 7.3 4.8 1.4 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Ferritin PF00210.19 gi|298674394|ref|YP_003726144.1| - 0.011 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Ferritin-like domain HTH_Tnp_IS630 PF01710.11 gi|298674394|ref|YP_003726144.1| - 0.07 12.8 0.6 0.6 9.7 0.4 2.1 1 1 0 1 1 1 0 Transposase Integrase_DNA PF02920.10 gi|298674394|ref|YP_003726144.1| - 0.082 12.3 1.9 0.75 9.2 0.7 2.4 2 0 0 2 2 2 0 DNA binding domain of tn916 integrase Paramyxo_NS_C PF02725.9 gi|298674394|ref|YP_003726144.1| - 0.1 12.1 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Non-structural protein C NYN PF01936.13 gi|298674395|ref|YP_003726145.1| - 2.3e-22 79.8 0.0 3e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 NYN domain DUF4479 PF14794.1 gi|298674395|ref|YP_003726145.1| - 0.096 12.2 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) HMGL-like PF00682.14 gi|298674396|ref|YP_003726146.1| - 1.7e-72 243.8 0.8 3.1e-72 243.0 0.6 1.4 1 0 0 1 1 1 1 HMGL-like AIRC PF00731.15 gi|298674397|ref|YP_003726147.1| - 3.3e-21 75.1 5.8 4.3e-21 74.7 3.6 1.5 2 0 0 2 2 2 1 AIR carboxylase Asp_Glu_race PF01177.17 gi|298674397|ref|YP_003726147.1| - 0.026 14.4 0.6 0.042 13.7 0.1 1.7 2 0 0 2 2 2 0 Asp/Glu/Hydantoin racemase NAD_kinase PF01513.16 gi|298674398|ref|YP_003726148.1| - 1e-56 191.8 1.0 1.1e-56 191.6 0.7 1.0 1 0 0 1 1 1 1 ATP-NAD kinase PFK PF00365.15 gi|298674398|ref|YP_003726148.1| - 0.0051 15.8 0.0 0.0079 15.1 0.0 1.3 1 0 0 1 1 1 1 Phosphofructokinase DAGK_cat PF00781.19 gi|298674398|ref|YP_003726148.1| - 0.022 14.2 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Inositol_P PF00459.20 gi|298674399|ref|YP_003726149.1| - 2.2e-32 112.4 0.0 2.8e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|298674399|ref|YP_003726149.1| - 2.6e-05 23.2 0.0 6.1e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase HTH_38 PF13936.1 gi|298674399|ref|YP_003726149.1| - 0.046 13.2 0.2 0.084 12.4 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Gp_dh_C PF02800.15 gi|298674400|ref|YP_003726150.1| - 2.5e-23 82.2 0.0 3.9e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|298674400|ref|YP_003726150.1| - 9.4e-23 80.8 1.3 2.2e-22 79.6 0.9 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|298674400|ref|YP_003726150.1| - 4.1e-13 49.3 0.8 8.4e-13 48.3 0.6 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|298674400|ref|YP_003726150.1| - 1.1e-05 24.6 0.2 0.0095 15.1 0.1 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|298674400|ref|YP_003726150.1| - 4.8e-05 23.6 0.1 9.6e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|298674400|ref|YP_003726150.1| - 0.00022 21.7 0.1 0.00053 20.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|298674400|ref|YP_003726150.1| - 0.00059 20.2 0.2 0.0031 17.8 0.0 2.2 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|298674400|ref|YP_003726150.1| - 0.031 14.6 0.1 0.072 13.5 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|298674400|ref|YP_003726150.1| - 0.044 13.6 1.1 0.15 11.9 0.8 1.8 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|298674400|ref|YP_003726150.1| - 0.06 12.3 0.1 0.09 11.7 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase AA_permease_2 PF13520.1 gi|298674401|ref|YP_003726151.1| - 7.1e-53 179.6 57.2 9.2e-53 179.2 39.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|298674401|ref|YP_003726151.1| - 6.8e-45 153.2 49.4 9.7e-45 152.7 34.2 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|298674401|ref|YP_003726151.1| - 5.5e-20 72.0 0.2 8.6e-10 38.9 0.0 3.4 3 1 0 3 3 3 2 Universal stress protein family Spore_permease PF03845.8 gi|298674401|ref|YP_003726151.1| - 3.7e-10 38.9 21.7 3.7e-10 38.9 15.0 2.2 2 0 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.1 gi|298674401|ref|YP_003726151.1| - 0.77 9.6 9.6 0.053 13.3 2.1 2.7 2 0 0 2 2 2 0 C-terminus of AA_permease RNA_bind_2 PF10133.4 gi|298674402|ref|YP_003726152.1| - 1.3e-22 79.5 1.3 1.5e-22 79.3 0.9 1.0 1 0 0 1 1 1 1 Predicted RNA-binding protein DUF89 PF01937.14 gi|298674403|ref|YP_003726153.1| - 3.1e-56 190.6 0.1 3.9e-56 190.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 OrfB_IS605 PF01385.14 gi|298674404|ref|YP_003726154.1| - 1.7e-45 155.2 7.2 2.7e-45 154.5 5.0 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674404|ref|YP_003726154.1| - 1.4e-23 82.2 0.2 2.8e-23 81.3 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298674404|ref|YP_003726154.1| - 1.2e-20 72.5 1.7 2.8e-20 71.3 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain M_domain PF12938.2 gi|298674404|ref|YP_003726154.1| - 0.96 9.2 7.4 0.3 10.8 2.1 2.0 2 0 0 2 2 2 0 M domain of GW182 Occludin_ELL PF07303.8 gi|298674404|ref|YP_003726154.1| - 1.4 9.6 9.1 0.51 11.1 2.5 2.4 2 0 0 2 2 2 0 Occludin homology domain Phage_GP20 PF06810.6 gi|298674404|ref|YP_003726154.1| - 9.4 5.6 15.6 0.17 11.2 3.1 2.7 3 0 0 3 3 3 0 Phage minor structural protein GP20 DUF904 PF06005.7 gi|298674404|ref|YP_003726154.1| - 9.8 6.5 10.3 3.5 7.9 2.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF904) GntP_permease PF02447.11 gi|298674405|ref|YP_003726155.1| - 3.4e-64 216.9 26.8 4.2e-64 216.6 18.6 1.0 1 0 0 1 1 1 1 GntP family permease Chordopox_A13L PF05961.6 gi|298674405|ref|YP_003726155.1| - 0.018 14.9 1.5 1.5 8.7 0.0 2.8 2 0 0 2 2 2 0 Chordopoxvirus A13L protein AzlD PF05437.7 gi|298674405|ref|YP_003726155.1| - 0.16 11.9 0.0 0.16 11.9 0.0 4.9 5 1 1 6 6 6 0 Branched-chain amino acid transport protein (AzlD) BCCT PF02028.12 gi|298674406|ref|YP_003726156.1| - 2.2e-194 646.2 50.1 2.5e-194 646.0 34.7 1.0 1 0 0 1 1 1 1 BCCT family transporter Cofilin_ADF PF00241.15 gi|298674407|ref|YP_003726157.1| - 0.033 14.0 0.2 0.037 13.8 0.1 1.2 1 0 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein DpnD-PcfM PF14207.1 gi|298674407|ref|YP_003726157.1| - 0.1 12.3 0.3 0.54 10.0 0.1 2.0 2 0 0 2 2 2 0 DpnD/PcfM-like protein DUF4288 PF14119.1 gi|298674407|ref|YP_003726157.1| - 0.12 12.4 0.4 0.13 12.4 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) DUF1628 PF07790.6 gi|298674408|ref|YP_003726158.1| - 4.2e-26 91.4 4.0 5.9e-26 91.0 2.1 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) SNase PF00565.12 gi|298674409|ref|YP_003726159.1| - 1e-26 93.3 0.1 1.3e-26 92.9 0.1 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Mec-17 PF05301.6 gi|298674410|ref|YP_003726160.1| - 0.0099 15.8 0.3 0.021 14.7 0.2 1.6 1 0 0 1 1 1 1 Touch receptor neuron protein Mec-17 DUF1241 PF06840.6 gi|298674411|ref|YP_003726161.1| - 0.12 11.6 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) D5_N PF08706.6 gi|298674413|ref|YP_003726163.1| - 4.4e-17 62.5 0.6 8.6e-17 61.6 0.4 1.6 1 0 0 1 1 1 1 D5 N terminal like Pox_D5 PF03288.11 gi|298674413|ref|YP_003726163.1| - 2.6e-08 34.0 3.2 3.5e-08 33.5 0.1 2.6 2 1 1 3 3 3 1 Poxvirus D5 protein-like RFX_DNA_binding PF02257.10 gi|298674413|ref|YP_003726163.1| - 0.00017 21.6 0.0 0.00046 20.2 0.0 1.7 1 0 0 1 1 1 1 RFX DNA-binding domain PAS_9 PF13426.1 gi|298674414|ref|YP_003726164.1| - 1.8e-44 150.3 1.3 3.7e-11 43.3 0.1 4.9 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|298674414|ref|YP_003726164.1| - 3e-41 139.9 0.0 4.7e-21 74.8 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|298674414|ref|YP_003726164.1| - 6.4e-32 109.6 0.0 1.3e-08 34.6 0.0 4.6 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.7 gi|298674414|ref|YP_003726164.1| - 2.6e-30 104.0 2.8 6.5e-30 102.8 1.1 2.5 2 0 0 2 2 1 1 Histidine kinase PAS_8 PF13188.1 gi|298674414|ref|YP_003726164.1| - 1.9e-21 75.1 0.0 4.5e-06 26.3 0.1 4.5 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|298674414|ref|YP_003726164.1| - 8.7e-10 38.5 0.5 0.0003 20.8 0.0 4.8 4 0 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|298674414|ref|YP_003726164.1| - 1.3e-09 38.2 2.0 0.0067 16.6 0.0 4.8 5 0 0 5 5 4 2 PAS domain HATPase_c PF02518.21 gi|298674414|ref|YP_003726164.1| - 3.1e-08 33.3 0.1 1.8e-07 30.8 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|298674414|ref|YP_003726164.1| - 3.5e-06 27.3 1.3 6e-06 26.6 0.0 2.1 2 0 0 2 2 1 1 HWE histidine kinase PAS_7 PF12860.2 gi|298674414|ref|YP_003726164.1| - 0.00016 21.6 2.5 1.7 8.6 0.0 5.1 5 2 0 5 5 5 2 PAS fold HATPase_c_2 PF13581.1 gi|298674414|ref|YP_003726164.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cache_3 PF14827.1 gi|298674414|ref|YP_003726164.1| - 0.0016 18.3 0.0 0.36 10.7 0.0 2.7 2 0 0 2 2 2 1 Sensory domain of two-component sensor kinase PAS_11 PF14598.1 gi|298674414|ref|YP_003726164.1| - 0.0018 18.2 0.4 2.1 8.3 0.0 3.1 3 0 0 3 3 3 2 PAS domain SPATA24 PF15175.1 gi|298674414|ref|YP_003726164.1| - 0.6 9.7 9.5 4.7 6.8 2.5 3.5 4 0 0 4 4 4 0 Spermatogenesis-associated protein 24 CorA PF01544.13 gi|298674414|ref|YP_003726164.1| - 1.7 7.5 12.6 0.47 9.4 5.8 2.1 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein YgaB PF14182.1 gi|298674414|ref|YP_003726164.1| - 4 7.7 13.2 12 6.2 0.4 3.7 3 0 0 3 3 3 0 YgaB-like protein TRAM PF01938.15 gi|298674415|ref|YP_003726165.1| - 5e-14 51.8 0.4 5.4e-14 51.7 0.3 1.0 1 0 0 1 1 1 1 TRAM domain Hexapep PF00132.19 gi|298674415|ref|YP_003726165.1| - 0.084 12.4 0.3 0.17 11.4 0.2 1.5 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) LTD PF00932.14 gi|298674416|ref|YP_003726166.1| - 1.6e-22 79.7 6.7 1.6e-22 79.7 4.7 2.5 2 1 0 2 2 2 1 Lamin Tail Domain BTB PF00651.26 gi|298674417|ref|YP_003726167.1| - 0.0078 16.1 0.1 0.013 15.4 0.1 1.3 1 0 0 1 1 1 1 BTB/POZ domain PDDEXK_4 PF14281.1 gi|298674419|ref|YP_003726169.1| - 7.5e-17 61.7 4.5 7.5e-17 61.7 3.1 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF4064 PF13273.1 gi|298674420|ref|YP_003726170.1| - 0.0053 16.8 1.9 0.0053 16.8 1.3 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) TrbC PF04956.8 gi|298674420|ref|YP_003726170.1| - 0.0064 16.4 1.1 0.43 10.6 0.1 2.2 1 1 1 2 2 2 1 TrbC/VIRB2 family Oxidored_q2 PF00420.19 gi|298674420|ref|YP_003726170.1| - 0.049 13.2 0.5 0.19 11.3 0.3 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BPD_transp_1 PF00528.17 gi|298674420|ref|YP_003726170.1| - 0.1 12.1 4.0 3.8 6.9 2.6 2.0 1 1 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component TM_helix PF05552.7 gi|298674420|ref|YP_003726170.1| - 0.78 9.4 4.4 2.7 7.7 0.3 2.5 2 0 0 2 2 2 0 Conserved TM helix FixP_N PF14715.1 gi|298674420|ref|YP_003726170.1| - 0.91 8.9 8.2 0.23 10.8 1.1 2.8 2 1 1 3 3 3 0 N-terminal domain of cytochrome oxidase-cbb3, FixP DUF3671 PF12420.3 gi|298674420|ref|YP_003726170.1| - 1.7 8.6 7.5 0.26 11.2 1.9 1.8 1 1 1 2 2 2 0 Protein of unknown function Dus PF01207.12 gi|298674421|ref|YP_003726171.1| - 0.03 13.1 0.1 0.041 12.7 0.1 1.1 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) DUF2335 PF10097.4 gi|298674421|ref|YP_003726171.1| - 0.031 13.9 0.8 5.8 6.6 0.7 3.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2335) DUF4168 PF13767.1 gi|298674421|ref|YP_003726171.1| - 0.54 10.9 4.2 0.92 10.1 2.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4168) Radical_SAM PF04055.16 gi|298674422|ref|YP_003726172.1| - 5.2e-07 29.9 0.0 2.1e-06 28.0 0.0 1.9 1 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298674422|ref|YP_003726172.1| - 8.4e-06 25.9 0.1 1.6e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298674422|ref|YP_003726172.1| - 2.3e-05 24.4 0.0 6.2e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain WGG PF10273.4 gi|298674422|ref|YP_003726172.1| - 0.057 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Pre-rRNA-processing protein TSR2 Mrr_cat_2 PF13156.1 gi|298674423|ref|YP_003726173.1| - 0.096 12.5 0.5 0.2 11.5 0.0 1.6 2 0 0 2 2 2 0 Restriction endonuclease Chordopox_A13L PF05961.6 gi|298674423|ref|YP_003726173.1| - 0.14 12.1 2.1 0.29 11.1 0.4 2.1 2 0 0 2 2 2 0 Chordopoxvirus A13L protein DUF948 PF06103.6 gi|298674423|ref|YP_003726173.1| - 0.53 10.1 3.2 2.5 8.0 0.4 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) N6_Mtase PF02384.11 gi|298674424|ref|YP_003726174.1| - 8.7e-63 212.2 0.8 1.4e-62 211.5 0.5 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|298674424|ref|YP_003726174.1| - 1.7e-21 77.0 11.2 7e-21 75.0 0.5 2.7 2 0 0 2 2 2 1 HsdM N-terminal domain Methyltransf_26 PF13659.1 gi|298674424|ref|YP_003726174.1| - 5.1e-07 29.7 0.0 1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|298674424|ref|YP_003726174.1| - 3.8e-05 23.3 0.0 7.8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF4355 PF14265.1 gi|298674424|ref|YP_003726174.1| - 0.0042 17.0 7.4 0.014 15.3 5.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4355) AviRa PF11599.3 gi|298674424|ref|YP_003726174.1| - 0.025 13.6 0.0 0.048 12.6 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_31 PF13847.1 gi|298674424|ref|YP_003726174.1| - 0.029 13.9 0.0 0.17 11.4 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.9 gi|298674424|ref|YP_003726174.1| - 0.071 12.4 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase small domain SbcD_C PF12320.3 gi|298674424|ref|YP_003726174.1| - 0.24 11.4 4.4 0.59 10.2 0.6 2.6 2 0 0 2 2 2 0 Type 5 capsule protein repressor C-terminal domain DUF1002 PF06207.6 gi|298674424|ref|YP_003726174.1| - 3.5 6.8 10.6 3.8 6.7 3.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) Methylase_S PF01420.14 gi|298674425|ref|YP_003726175.1| - 5e-36 124.2 12.9 7.1e-18 65.1 0.3 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Atg14 PF10186.4 gi|298674425|ref|YP_003726175.1| - 2 7.2 7.8 4.6 6.0 0.2 2.1 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 HSDR_N PF04313.9 gi|298674426|ref|YP_003726176.1| - 2.4e-17 63.2 5.1 2.9e-17 63.0 1.6 2.5 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.10 gi|298674426|ref|YP_003726176.1| - 2.8e-16 59.8 0.1 1.2e-15 57.7 0.1 2.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|298674426|ref|YP_003726176.1| - 3.9e-09 36.2 0.2 1.3e-08 34.4 0.1 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF87 PF01935.12 gi|298674426|ref|YP_003726176.1| - 0.11 12.2 11.6 0.14 11.9 0.0 4.1 4 1 0 4 4 4 0 Domain of unknown function DUF87 TBP PF00352.16 gi|298674427|ref|YP_003726177.1| - 4.5e-30 102.8 0.2 1.4e-16 59.5 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) Antimicrobial15 PF08110.7 gi|298674427|ref|YP_003726177.1| - 0.032 14.2 1.0 0.063 13.3 0.7 1.5 1 0 0 1 1 1 0 Ocellatin family DUF1048 PF06304.6 gi|298674427|ref|YP_003726177.1| - 0.11 12.8 0.2 0.22 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1048) PLDc_2 PF13091.1 gi|298674428|ref|YP_003726178.1| - 7.4e-13 48.3 0.3 1.1e-12 47.7 0.2 1.2 1 0 0 1 1 1 1 PLD-like domain Regulator_TrmB PF11495.3 gi|298674428|ref|YP_003726178.1| - 0.00084 18.3 0.1 0.0013 17.8 0.1 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Ndc1_Nup PF09531.5 gi|298674428|ref|YP_003726178.1| - 0.15 10.4 0.7 0.23 9.8 0.5 1.3 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup zf-CpG_bind_C PF12269.3 gi|298674428|ref|YP_003726178.1| - 0.95 8.8 6.9 0.57 9.6 1.6 2.6 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain DZR PF12773.2 gi|298674428|ref|YP_003726178.1| - 1.6 8.5 15.6 6.5 6.6 8.0 3.0 2 1 1 3 3 3 0 Double zinc ribbon NMD3 PF04981.8 gi|298674428|ref|YP_003726178.1| - 2.6 7.0 12.0 0.45 9.5 0.7 2.7 3 0 0 3 3 3 0 NMD3 family zf-RING_5 PF14634.1 gi|298674428|ref|YP_003726178.1| - 4.9 6.9 8.9 4.4 7.1 1.1 3.2 3 0 0 3 3 3 0 zinc-RING finger domain Cytochrom_c3_2 PF14537.1 gi|298674428|ref|YP_003726178.1| - 9 6.7 14.7 15 6.0 2.4 3.1 2 1 0 3 3 3 0 Cytochrome c3 zinc_ribbon_2 PF13240.1 gi|298674429|ref|YP_003726179.1| - 0.22 11.0 1.7 0.47 10.0 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|298674430|ref|YP_003726180.1| - 0.33 10.7 2.0 1.7 8.5 0.0 2.2 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.1 gi|298674432|ref|YP_003726182.1| - 0.013 14.6 0.1 0.019 14.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|298674432|ref|YP_003726182.1| - 0.044 13.0 0.1 0.068 12.4 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding TPR_17 PF13431.1 gi|298674432|ref|YP_003726182.1| - 0.049 13.8 0.9 0.38 11.0 0.1 2.4 1 1 1 2 2 2 0 Tetratricopeptide repeat zinc_ribbon_2 PF13240.1 gi|298674432|ref|YP_003726182.1| - 0.098 12.1 0.3 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Phage_integrase PF00589.17 gi|298674433|ref|YP_003726183.1| - 4.4e-19 68.8 0.2 1e-15 57.8 0.1 2.2 2 0 0 2 2 2 2 Phage integrase family zinc_ribbon_5 PF13719.1 gi|298674433|ref|YP_003726183.1| - 0.011 15.3 0.2 0.035 13.7 0.1 1.9 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298674433|ref|YP_003726183.1| - 0.021 14.5 0.2 0.074 12.7 0.1 2.0 1 0 0 1 1 1 0 zinc-ribbon domain DUF1628 PF07790.6 gi|298674434|ref|YP_003726184.1| - 5.6e-26 91.1 2.0 1.1e-25 90.1 1.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Phage-tail_3 PF13550.1 gi|298674434|ref|YP_003726184.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Putative phage tail protein PDDEXK_3 PF13366.1 gi|298674435|ref|YP_003726185.1| - 3.6e-06 27.0 3.0 5.1e-06 26.5 2.1 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF4367 PF14285.1 gi|298674435|ref|YP_003726185.1| - 0.33 10.2 4.9 0.52 9.6 3.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4367) Imm39 PF15600.1 gi|298674435|ref|YP_003726185.1| - 0.33 10.7 5.7 0.092 12.5 0.9 2.0 2 1 0 2 2 2 0 Immunity protein 39 GPDPase_memb PF10110.4 gi|298674436|ref|YP_003726186.1| - 8.8e-07 28.4 9.2 8e-05 22.1 0.1 3.2 1 1 2 4 4 4 2 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.6 gi|298674436|ref|YP_003726186.1| - 9.3e-07 28.5 11.0 1.9e-06 27.5 4.0 2.3 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0259) SpecificRecomb PF10136.4 gi|298674436|ref|YP_003726186.1| - 0.00015 19.9 1.9 0.00023 19.3 1.3 1.2 1 0 0 1 1 1 1 Site-specific recombinase DUF1628 PF07790.6 gi|298674437|ref|YP_003726187.1| - 1.9e-05 25.3 1.0 0.00075 20.2 0.2 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF4369 PF14289.1 gi|298674437|ref|YP_003726187.1| - 0.027 14.4 1.8 2.4 8.2 0.0 3.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4369) DUF1628 PF07790.6 gi|298674438|ref|YP_003726188.1| - 0.017 15.8 4.5 0.03 15.0 2.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) Ly49 PF08391.5 gi|298674438|ref|YP_003726188.1| - 0.024 14.7 0.2 0.054 13.6 0.1 1.7 1 1 0 1 1 1 0 Ly49-like protein, N-terminal region DUF1628 PF07790.6 gi|298674439|ref|YP_003726189.1| - 0.017 15.8 4.1 0.065 14.0 2.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) GPI-anchored PF10342.4 gi|298674439|ref|YP_003726189.1| - 0.25 11.8 4.1 0.11 12.9 0.8 1.9 1 1 1 2 2 2 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family Imm14 PF15428.1 gi|298674440|ref|YP_003726190.1| - 0.013 15.9 0.8 3.4 8.0 0.1 2.6 2 1 0 2 2 2 0 Immunity protein 14 Arch_fla_DE PF04659.8 gi|298674443|ref|YP_003726193.1| - 1.1e-26 92.4 0.2 1.1e-26 92.4 0.2 3.6 3 1 0 3 3 3 1 Archaeal flagella protein IFT57 PF10498.4 gi|298674443|ref|YP_003726193.1| - 0.0033 16.2 11.1 0.0033 16.2 7.7 6.0 3 2 1 5 5 4 1 Intra-flagellar transport protein 57 YjcZ PF13990.1 gi|298674443|ref|YP_003726193.1| - 0.0058 15.8 5.8 0.059 12.5 0.2 2.9 1 1 1 2 2 2 2 YjcZ-like protein FlaC_arch PF05377.6 gi|298674443|ref|YP_003726193.1| - 0.0099 15.7 0.6 0.0099 15.7 0.4 9.1 9 1 1 10 10 9 3 Flagella accessory protein C (FlaC) DUF1664 PF07889.7 gi|298674443|ref|YP_003726193.1| - 0.015 15.0 1.8 0.015 15.0 1.2 5.4 3 1 2 5 5 5 0 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|298674443|ref|YP_003726193.1| - 0.016 14.4 25.7 0.098 11.8 6.8 3.6 2 1 1 3 3 3 0 Reovirus sigma C capsid protein KID PF02524.9 gi|298674443|ref|YP_003726193.1| - 0.2 11.8 5.3 4.6 7.7 0.1 5.1 3 0 0 3 3 3 0 KID repeat HisKA_3 PF07730.8 gi|298674443|ref|YP_003726193.1| - 0.23 11.8 1.3 1.4 9.3 0.0 3.1 3 0 0 3 3 3 0 Histidine kinase BLOC1_2 PF10046.4 gi|298674443|ref|YP_003726193.1| - 0.26 11.4 43.5 0.019 15.0 5.1 6.4 5 2 1 6 6 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.1 gi|298674443|ref|YP_003726193.1| - 6.2 7.3 25.0 0.44 11.0 0.3 5.5 5 0 0 5 5 5 0 N-terminal domain of unknown function (DUF4140) MCPsignal PF00015.16 gi|298674443|ref|YP_003726193.1| - 7.2 6.0 30.8 0.027 14.0 1.0 5.0 3 2 2 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.7 gi|298674443|ref|YP_003726193.1| - 7.6 6.8 36.0 1.3 9.2 2.1 7.2 3 1 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Katanin_con80 PF13925.1 gi|298674443|ref|YP_003726193.1| - 9.2 5.9 14.8 3.2 7.4 0.7 4.2 4 1 0 5 5 5 0 con80 domain of Katanin DUF489 PF04356.7 gi|298674443|ref|YP_003726193.1| - 9.7 5.7 14.6 1.4 8.4 1.3 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF489) DAP_epimerase PF01678.14 gi|298674444|ref|YP_003726194.1| - 1.4e-54 183.1 0.3 1.2e-29 102.6 0.0 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|298674444|ref|YP_003726194.1| - 0.016 14.0 0.0 0.028 13.2 0.0 1.3 1 0 0 1 1 1 0 Proline racemase Adenosine_kin PF04008.9 gi|298674444|ref|YP_003726194.1| - 0.06 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenosine specific kinase Acylphosphatase PF00708.13 gi|298674445|ref|YP_003726195.1| - 4e-30 103.7 0.0 4.8e-30 103.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF3252 PF11623.3 gi|298674445|ref|YP_003726195.1| - 0.062 12.7 0.1 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3252) tRNA-Thr_ED PF08915.6 gi|298674446|ref|YP_003726196.1| - 4e-55 185.5 0.1 7e-55 184.7 0.1 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|298674446|ref|YP_003726196.1| - 2.8e-25 88.8 2.2 4.7e-25 88.1 1.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|298674446|ref|YP_003726196.1| - 1.2e-19 70.0 0.5 3.1e-19 68.7 0.1 1.9 2 0 0 2 2 2 1 Anticodon binding domain DLD PF14878.1 gi|298674446|ref|YP_003726196.1| - 0.018 15.1 0.2 4.6 7.3 0.0 2.7 2 0 0 2 2 2 0 Death-like domain of SPT6 OrfB_Zn_ribbon PF07282.6 gi|298674447|ref|YP_003726197.1| - 1.3e-15 56.8 4.7 1.3e-15 56.8 3.2 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Rpr2 PF04032.11 gi|298674447|ref|YP_003726197.1| - 0.022 14.6 3.2 0.37 10.6 0.0 2.8 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain UPF0118 PF01594.11 gi|298674448|ref|YP_003726198.1| - 7.7e-46 156.5 45.8 9.1e-46 156.3 31.7 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 tRNA-synt_2d PF01409.15 gi|298674449|ref|YP_003726199.1| - 6.8e-94 313.6 0.0 8.8e-94 313.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|298674449|ref|YP_003726199.1| - 4.1e-05 22.5 0.2 0.043 12.5 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|298674449|ref|YP_003726199.1| - 8.5e-05 22.2 0.1 0.00023 20.7 0.1 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) TrmB PF01978.14 gi|298674449|ref|YP_003726199.1| - 0.034 13.8 2.3 0.36 10.5 0.1 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|298674449|ref|YP_003726199.1| - 0.047 13.4 0.9 3.1 7.6 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix tRNA-synt_1b PF00579.20 gi|298674450|ref|YP_003726200.1| - 9.8e-38 129.9 0.0 3.7e-21 75.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Radical_SAM PF04055.16 gi|298674451|ref|YP_003726201.1| - 7.9e-16 58.6 0.1 1.8e-15 57.5 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|298674451|ref|YP_003726201.1| - 1.1e-09 38.4 0.6 2.7e-09 37.2 0.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|298674451|ref|YP_003726201.1| - 0.0018 18.4 0.0 0.0039 17.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298674451|ref|YP_003726201.1| - 0.0018 18.2 0.0 0.0037 17.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain eIF-5_eIF-2B PF01873.12 gi|298674452|ref|YP_003726202.1| - 3.4e-39 133.3 0.0 4.7e-39 132.9 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|298674452|ref|YP_003726202.1| - 2.4e-12 46.4 0.6 4.9e-12 45.4 0.4 1.6 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|298674452|ref|YP_003726202.1| - 0.071 13.0 0.9 0.32 10.9 0.6 1.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|298674452|ref|YP_003726202.1| - 0.095 12.6 0.5 0.16 11.9 0.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-RanBP PF00641.13 gi|298674452|ref|YP_003726202.1| - 0.17 11.0 0.0 0.17 11.0 0.0 1.6 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Lar_restr_allev PF14354.1 gi|298674452|ref|YP_003726202.1| - 0.19 12.0 0.6 1.4 9.2 0.4 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L16 PF00252.13 gi|298674453|ref|YP_003726203.1| - 3e-30 104.6 0.2 3.5e-30 104.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1786 PF08735.5 gi|298674454|ref|YP_003726204.1| - 4.5e-90 301.2 0.0 7.1e-90 300.6 0.0 1.3 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) MoCF_biosynth PF00994.19 gi|298674455|ref|YP_003726205.1| - 7.4e-33 112.9 0.1 8.6e-33 112.7 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain CRS1_YhbY PF01985.16 gi|298674456|ref|YP_003726206.1| - 2.6e-23 81.7 0.4 2.9e-23 81.6 0.3 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF915 PF06028.6 gi|298674456|ref|YP_003726206.1| - 0.012 14.7 0.2 0.015 14.4 0.2 1.0 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) DUF190 PF02641.10 gi|298674457|ref|YP_003726207.1| - 7.1e-29 99.6 0.3 8e-29 99.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 MoeA_N PF03453.12 gi|298674458|ref|YP_003726208.1| - 4.6e-45 152.8 0.2 8.3e-45 152.0 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|298674458|ref|YP_003726208.1| - 8.7e-30 103.0 0.0 1.6e-29 102.1 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|298674458|ref|YP_003726208.1| - 9.6e-17 60.7 4.1 4.6e-16 58.5 0.0 3.5 5 0 0 5 5 5 1 MoeA C-terminal region (domain IV) UEV PF05743.8 gi|298674458|ref|YP_003726208.1| - 0.054 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 UEV domain MutL PF13941.1 gi|298674458|ref|YP_003726208.1| - 0.074 11.3 0.1 0.13 10.5 0.0 1.3 1 0 0 1 1 1 0 MutL protein ThiS PF02597.15 gi|298674459|ref|YP_003726209.1| - 1.4e-19 70.2 0.0 1.8e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family XPC-binding PF09280.6 gi|298674459|ref|YP_003726209.1| - 0.0019 17.6 0.1 0.0037 16.6 0.1 1.5 1 0 0 1 1 1 1 XPC-binding domain Flavoprotein PF02441.14 gi|298674460|ref|YP_003726210.1| - 5.8e-27 93.9 0.0 7.7e-27 93.5 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein DUF2099 PF09872.4 gi|298674461|ref|YP_003726211.1| - 0.039 12.9 0.1 0.045 12.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) HD PF01966.17 gi|298674462|ref|YP_003726212.1| - 5.2e-14 52.3 2.4 1.3e-13 51.0 1.4 1.9 2 0 0 2 2 2 1 HD domain DUF2482 PF10655.4 gi|298674462|ref|YP_003726212.1| - 0.035 14.1 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) HDOD PF08668.7 gi|298674462|ref|YP_003726212.1| - 0.11 11.7 0.1 0.34 10.1 0.0 1.9 1 1 0 1 1 1 0 HDOD domain UPF0052 PF01933.13 gi|298674463|ref|YP_003726213.1| - 6.2e-51 173.5 0.3 3.8e-50 170.9 0.2 1.8 1 1 0 1 1 1 1 Uncharacterised protein family UPF0052 CDP-OH_P_transf PF01066.16 gi|298674464|ref|YP_003726214.1| - 6.1e-17 61.7 4.3 6.1e-17 61.7 3.0 1.7 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PRA1 PF03208.14 gi|298674464|ref|YP_003726214.1| - 2.2 7.6 5.2 1.7 7.9 1.1 2.0 2 0 0 2 2 2 0 PRA1 family protein Mid2 PF04478.7 gi|298674464|ref|YP_003726214.1| - 7 6.0 9.7 0.076 12.4 0.3 2.1 2 1 1 3 3 3 0 Mid2 like cell wall stress sensor SKI PF01202.17 gi|298674465|ref|YP_003726215.1| - 7e-35 120.2 0.2 7.9e-35 120.0 0.2 1.0 1 0 0 1 1 1 1 Shikimate kinase AAA_17 PF13207.1 gi|298674465|ref|YP_003726215.1| - 2.3e-09 38.0 0.1 2.9e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298674465|ref|YP_003726215.1| - 1.3e-07 31.9 1.9 2.3e-07 31.1 0.5 2.0 1 1 1 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|298674465|ref|YP_003726215.1| - 6.1e-07 29.5 1.7 3.5e-06 27.0 1.2 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_33 PF13671.1 gi|298674465|ref|YP_003726215.1| - 2.5e-05 24.1 0.0 6.1e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|298674465|ref|YP_003726215.1| - 0.0013 18.1 0.0 0.0024 17.3 0.0 1.4 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA PF00004.24 gi|298674465|ref|YP_003726215.1| - 0.0014 18.8 0.1 0.0068 16.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|298674465|ref|YP_003726215.1| - 0.0041 16.2 0.0 0.18 10.8 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin MazG-like PF12643.2 gi|298674465|ref|YP_003726215.1| - 0.0093 15.8 0.7 0.024 14.5 0.1 1.9 2 0 0 2 2 2 1 MazG-like family NB-ARC PF00931.17 gi|298674465|ref|YP_003726215.1| - 0.0099 14.7 0.1 0.026 13.3 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain ATP_bind_2 PF03668.10 gi|298674465|ref|YP_003726215.1| - 0.0099 14.9 0.3 0.017 14.2 0.2 1.4 1 1 0 1 1 1 1 P-loop ATPase protein family AAA_24 PF13479.1 gi|298674465|ref|YP_003726215.1| - 0.014 14.9 0.5 0.026 14.1 0.3 1.4 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|298674465|ref|YP_003726215.1| - 0.014 14.7 0.3 2 7.7 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_14 PF13173.1 gi|298674465|ref|YP_003726215.1| - 0.021 14.7 0.5 0.032 14.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|298674465|ref|YP_003726215.1| - 0.023 15.0 0.9 0.042 14.1 0.6 1.8 1 1 0 1 1 1 0 ABC transporter ADK PF00406.17 gi|298674465|ref|YP_003726215.1| - 0.028 14.3 1.9 1.8 8.3 0.1 2.3 2 1 0 2 2 2 0 Adenylate kinase AAA_22 PF13401.1 gi|298674465|ref|YP_003726215.1| - 0.042 14.0 0.1 0.057 13.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF4463 PF14703.1 gi|298674465|ref|YP_003726215.1| - 0.051 14.1 0.3 0.051 14.1 0.2 2.0 3 0 0 3 3 2 0 Domain of unknown function (DUF4463) MMR_HSR1 PF01926.18 gi|298674465|ref|YP_003726215.1| - 0.054 13.4 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|298674465|ref|YP_003726215.1| - 0.086 11.7 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_15 PF13175.1 gi|298674465|ref|YP_003726215.1| - 0.16 11.0 6.4 0.19 10.7 4.4 1.0 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.22 gi|298674465|ref|YP_003726215.1| - 0.72 9.2 2.9 0.77 9.1 0.3 2.1 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF87 PF01935.12 gi|298674465|ref|YP_003726215.1| - 3.5 7.3 6.4 4.9 6.8 1.5 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF87 PurS PF02700.9 gi|298674466|ref|YP_003726216.1| - 8.2e-28 96.1 0.0 9.2e-28 96.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.4 gi|298674466|ref|YP_003726216.1| - 0.0063 15.5 0.0 0.0075 15.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2184) MRP-S26 PF14943.1 gi|298674466|ref|YP_003726216.1| - 0.062 12.8 0.0 0.063 12.8 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 GATase_5 PF13507.1 gi|298674467|ref|YP_003726217.1| - 2.3e-48 164.3 0.0 2.7e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|298674467|ref|YP_003726217.1| - 1.4e-08 34.2 0.0 2.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.23 gi|298674467|ref|YP_003726217.1| - 1.8e-07 30.7 0.0 4e-07 29.6 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|298674467|ref|YP_003726217.1| - 3.4e-07 29.9 0.0 7.8e-07 28.8 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|298674467|ref|YP_003726217.1| - 8.4e-06 25.1 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|298674467|ref|YP_003726217.1| - 0.00016 21.3 0.0 0.00041 20.0 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|298674467|ref|YP_003726217.1| - 0.0017 17.8 0.0 0.0039 16.6 0.0 1.8 2 1 0 2 2 2 1 Peptidase C26 RNase_HII PF01351.13 gi|298674468|ref|YP_003726218.1| - 2.2e-48 164.5 0.1 2.5e-48 164.3 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII Peptidase_M49 PF03571.10 gi|298674468|ref|YP_003726218.1| - 0.04 11.9 0.1 0.049 11.7 0.1 1.1 1 0 0 1 1 1 0 Peptidase family M49 DUF3837 PF12939.2 gi|298674468|ref|YP_003726218.1| - 0.087 12.8 0.0 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3837) Ribosomal_S6 PF01250.12 gi|298674468|ref|YP_003726218.1| - 0.089 12.6 0.0 0.29 11.0 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein S6 AsiA PF09010.5 gi|298674468|ref|YP_003726218.1| - 0.11 12.3 0.2 0.35 10.7 0.1 1.8 1 1 0 1 1 1 0 Anti-Sigma Factor A Inhibitor_I9 PF05922.11 gi|298674468|ref|YP_003726218.1| - 0.19 12.2 1.3 6.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Peptidase inhibitor I9 T2SF PF00482.18 gi|298674469|ref|YP_003726219.1| - 2.7e-32 111.2 1.5 7.5e-19 67.8 0.5 4.2 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|298674469|ref|YP_003726219.1| - 0.005 15.6 0.6 1.1 7.9 0.0 2.7 1 1 1 2 2 2 1 Integral peroxisomal membrane peroxin Tetraspannin PF00335.15 gi|298674469|ref|YP_003726219.1| - 0.0074 15.5 4.9 0.54 9.5 0.0 3.6 3 0 0 3 3 3 2 Tetraspanin family 5-nucleotidase PF06189.7 gi|298674469|ref|YP_003726219.1| - 0.017 13.9 0.1 1.7 7.4 0.0 2.3 2 0 0 2 2 2 0 5'-nucleotidase NDUF_C2 PF06374.6 gi|298674469|ref|YP_003726219.1| - 0.55 10.2 3.3 2 8.4 0.3 3.0 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) T2SE PF00437.15 gi|298674470|ref|YP_003726220.1| - 1.7e-49 168.1 0.0 2.5e-49 167.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|298674470|ref|YP_003726220.1| - 0.0012 18.2 0.1 0.0031 16.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain TFIIF_alpha PF05793.7 gi|298674470|ref|YP_003726220.1| - 0.057 11.7 27.2 0.1 10.9 18.9 1.4 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Kelch_3 PF13415.1 gi|298674470|ref|YP_003726220.1| - 0.14 12.3 0.1 0.51 10.5 0.0 1.9 2 0 0 2 2 2 0 Galactose oxidase, central domain B5 PF03484.10 gi|298674471|ref|YP_003726221.1| - 1.1e-20 73.2 0.9 9.1e-20 70.2 0.0 2.8 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|298674471|ref|YP_003726221.1| - 1.2e-17 63.9 0.0 2.4e-17 62.9 0.0 1.6 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|298674471|ref|YP_003726221.1| - 0.012 14.7 0.3 0.025 13.7 0.2 1.5 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) DUF4265 PF14085.1 gi|298674471|ref|YP_003726221.1| - 0.034 13.9 0.1 1.2 8.8 0.0 3.2 4 1 1 5 5 5 0 Domain of unknown function (DUF4265) OrfB_IS605 PF01385.14 gi|298674472|ref|YP_003726222.1| - 4.9e-36 124.2 4.1 2e-35 122.2 2.9 1.8 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674472|ref|YP_003726222.1| - 1.1e-23 82.6 0.9 2.6e-23 81.4 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298674472|ref|YP_003726222.1| - 1.6e-08 33.7 0.0 4.5e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zinc_ribbon_2 PF13240.1 gi|298674472|ref|YP_003726222.1| - 0.002 17.5 0.8 0.71 9.4 0.1 2.8 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|298674472|ref|YP_003726222.1| - 0.0038 17.0 0.7 0.0087 15.8 0.5 1.6 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|298674472|ref|YP_003726222.1| - 0.0046 16.2 0.3 2.1 7.7 0.0 2.6 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|298674472|ref|YP_003726222.1| - 0.036 13.2 0.4 5.8 6.2 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|298674472|ref|YP_003726222.1| - 0.11 12.3 0.7 0.23 11.2 0.5 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF2040 PF09745.4 gi|298674472|ref|YP_003726222.1| - 3.4 7.5 9.1 1.2 8.9 0.1 2.7 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 55 (DUF2040) TauE PF01925.14 gi|298674473|ref|YP_003726223.1| - 2.9e-43 148.0 39.5 3.4e-43 147.8 27.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE ATP1G1_PLM_MAT8 PF02038.11 gi|298674473|ref|YP_003726223.1| - 4.3 6.4 7.2 0.2 10.6 0.3 2.3 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Nitroreductase PF00881.19 gi|298674474|ref|YP_003726224.1| - 4.8e-36 124.0 0.0 5.5e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|298674474|ref|YP_003726224.1| - 1.4e-06 27.6 0.4 0.13 11.4 0.0 3.3 1 1 2 3 3 3 3 Putative TM nitroreductase Baculo_FP PF03258.9 gi|298674474|ref|YP_003726224.1| - 0.057 12.5 0.1 0.11 11.5 0.1 1.5 1 0 0 1 1 1 0 Baculovirus FP protein Frigida PF07899.6 gi|298674474|ref|YP_003726224.1| - 0.11 11.2 0.0 0.17 10.6 0.0 1.2 1 0 0 1 1 1 0 Frigida-like protein COMPASS-Shg1 PF05205.7 gi|298674474|ref|YP_003726224.1| - 0.18 12.0 2.7 0.44 10.8 1.9 1.6 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 Lipoprotein_17 PF04200.7 gi|298674475|ref|YP_003726225.1| - 0.073 13.2 0.5 0.17 12.0 0.1 1.7 2 0 0 2 2 2 0 Lipoprotein associated domain FeoA PF04023.9 gi|298674476|ref|YP_003726226.1| - 1.1e-08 34.9 0.0 1.4e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 FeoA domain Fe_dep_repr_C PF02742.10 gi|298674476|ref|YP_003726226.1| - 0.0001 21.9 0.1 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain UPF0182 PF03699.8 gi|298674477|ref|YP_003726227.1| - 4.2e-281 934.4 14.7 5.1e-281 934.1 10.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0182) Fasciclin PF02469.17 gi|298674478|ref|YP_003726228.1| - 6.5e-31 106.9 0.0 7.4e-31 106.8 0.0 1.0 1 0 0 1 1 1 1 Fasciclin domain DEAD_assoc PF08494.6 gi|298674479|ref|YP_003726229.1| - 8e-40 136.5 0.0 1.3e-39 135.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|298674479|ref|YP_003726229.1| - 2.1e-33 115.2 0.0 6.7e-33 113.5 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|298674479|ref|YP_003726229.1| - 6.2e-20 70.8 0.0 1.7e-16 59.8 0.0 3.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|298674479|ref|YP_003726229.1| - 1.1e-05 25.3 0.0 2.3e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|298674479|ref|YP_003726229.1| - 5.1e-05 22.2 0.2 0.00042 19.2 0.0 2.0 2 0 0 2 2 2 1 SNF2 family N-terminal domain DUF2551 PF10826.3 gi|298674479|ref|YP_003726229.1| - 0.0072 16.2 0.1 3.4 7.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2551) Zn-ribbon_8 PF09723.5 gi|298674479|ref|YP_003726229.1| - 0.086 12.8 0.8 0.21 11.5 0.5 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Metallophos PF00149.23 gi|298674480|ref|YP_003726230.1| - 3.1e-09 36.5 0.6 4.2e-09 36.0 0.4 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|298674480|ref|YP_003726230.1| - 1.3e-05 25.0 0.0 2.1e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|298674480|ref|YP_003726230.1| - 0.027 13.6 0.0 0.13 11.4 0.0 1.9 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily AMP-binding PF00501.23 gi|298674481|ref|YP_003726231.1| - 1.6e-92 310.1 0.0 1.9e-92 309.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|298674481|ref|YP_003726231.1| - 2.4e-19 70.0 0.0 4.5e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DS PF01916.12 gi|298674482|ref|YP_003726232.1| - 3.2e-87 292.4 0.1 3.7e-87 292.2 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase OMPdecase PF00215.19 gi|298674483|ref|YP_003726233.1| - 5.8e-44 150.1 0.4 7.3e-44 149.8 0.3 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|298674483|ref|YP_003726233.1| - 2.8e-06 26.7 3.5 0.0033 16.6 0.2 2.9 1 1 2 3 3 3 2 PcrB family Ribosomal_S24e PF01282.14 gi|298674483|ref|YP_003726233.1| - 0.1 12.3 0.0 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S24e DEAD_assoc PF08494.6 gi|298674483|ref|YP_003726233.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 DEAD/H associated PYC_OADA PF02436.13 gi|298674484|ref|YP_003726234.1| - 1.9e-64 216.6 2.6 3.1e-64 216.0 0.9 1.9 2 0 0 2 2 2 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|298674484|ref|YP_003726234.1| - 1.7e-45 155.5 0.0 2.5e-45 154.9 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|298674484|ref|YP_003726234.1| - 2.6e-20 71.8 3.4 7.5e-20 70.3 1.3 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|298674484|ref|YP_003726234.1| - 1.2e-08 34.4 0.2 0.00012 21.6 0.0 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.1 gi|298674484|ref|YP_003726234.1| - 2.9e-06 27.5 0.2 0.018 15.4 0.0 2.8 2 0 0 2 2 2 2 HlyD family secretion protein HlyD PF00529.15 gi|298674484|ref|YP_003726234.1| - 0.00025 20.4 0.1 0.013 14.8 0.0 2.3 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|298674484|ref|YP_003726234.1| - 0.0024 17.0 0.3 0.28 10.3 0.0 2.5 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|298674484|ref|YP_003726234.1| - 0.013 15.1 1.4 0.027 14.1 0.3 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein DUF561 PF04481.7 gi|298674484|ref|YP_003726234.1| - 0.067 12.1 0.2 0.94 8.3 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF561) RnfC_N PF13375.1 gi|298674484|ref|YP_003726234.1| - 0.48 10.1 4.7 0.61 9.8 0.7 2.9 2 1 1 3 3 3 0 RnfC Barrel sandwich hybrid domain CPSase_L_D2 PF02786.12 gi|298674485|ref|YP_003726235.1| - 1.8e-77 259.4 0.2 2.7e-77 258.8 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|298674485|ref|YP_003726235.1| - 9.7e-46 154.4 0.1 4.8e-45 152.1 0.0 2.3 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|298674485|ref|YP_003726235.1| - 1.1e-42 144.3 0.0 2.9e-42 143.0 0.0 1.8 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|298674485|ref|YP_003726235.1| - 4.1e-18 65.7 0.0 8e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298674485|ref|YP_003726235.1| - 2.6e-15 55.9 0.0 9.5e-15 54.1 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|298674485|ref|YP_003726235.1| - 5.7e-13 48.7 1.5 9.3e-13 48.0 0.1 2.0 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|298674485|ref|YP_003726235.1| - 1e-08 34.8 0.3 6.5e-08 32.2 0.2 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|298674485|ref|YP_003726235.1| - 6.4e-08 32.6 0.1 1.2e-07 31.7 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|298674485|ref|YP_003726235.1| - 8.8e-07 28.4 0.0 1.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|298674485|ref|YP_003726235.1| - 0.00042 19.9 0.1 0.00079 19.0 0.0 1.6 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AP_endonuc_2 PF01261.19 gi|298674485|ref|YP_003726235.1| - 0.088 12.0 0.0 0.83 8.9 0.0 2.5 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel BPL_LplA_LipB PF03099.14 gi|298674486|ref|YP_003726236.1| - 4.3e-22 78.4 0.0 1.8e-21 76.4 0.0 2.0 2 1 1 3 3 3 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|298674486|ref|YP_003726236.1| - 4e-17 61.6 0.1 7.8e-17 60.6 0.1 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|298674486|ref|YP_003726236.1| - 3.1e-08 33.1 0.1 7.6e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|298674486|ref|YP_003726236.1| - 7.1e-08 31.7 0.0 1.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|298674486|ref|YP_003726236.1| - 0.004 17.2 0.0 0.0074 16.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|298674486|ref|YP_003726236.1| - 0.011 15.5 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|298674486|ref|YP_003726236.1| - 0.018 14.7 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|298674486|ref|YP_003726236.1| - 0.029 14.0 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Put_DNA-bind_N PF06971.8 gi|298674486|ref|YP_003726236.1| - 0.049 13.3 0.1 2.2 8.0 0.0 2.6 1 1 1 2 2 2 0 Putative DNA-binding protein N-terminus HTH_23 PF13384.1 gi|298674486|ref|YP_003726236.1| - 0.067 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_39 PF14090.1 gi|298674486|ref|YP_003726236.1| - 0.087 12.3 0.0 0.39 10.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|298674486|ref|YP_003726236.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|298674486|ref|YP_003726236.1| - 0.17 11.4 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain S-layer PF07752.6 gi|298674487|ref|YP_003726237.1| - 2.7e-08 33.3 0.9 3.3e-08 33.0 0.6 1.1 1 0 0 1 1 1 1 S-layer protein SurA_N_3 PF13624.1 gi|298674487|ref|YP_003726237.1| - 0.015 15.2 0.1 0.019 14.9 0.1 1.2 1 0 0 1 1 1 0 SurA N-terminal domain Tetraspannin PF00335.15 gi|298674487|ref|YP_003726237.1| - 0.12 11.6 0.6 0.54 9.4 0.4 1.9 1 1 0 1 1 1 0 Tetraspanin family DUF3450 PF11932.3 gi|298674488|ref|YP_003726238.1| - 2.8e-05 23.5 13.3 2.8e-05 23.5 9.2 3.6 1 1 3 4 4 4 1 Protein of unknown function (DUF3450) Reo_sigmaC PF04582.7 gi|298674488|ref|YP_003726238.1| - 0.00024 20.3 8.6 0.0065 15.6 2.1 2.4 1 1 0 2 2 2 2 Reovirus sigma C capsid protein DUF3584 PF12128.3 gi|298674488|ref|YP_003726238.1| - 0.00051 17.5 42.7 0.00067 17.1 29.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.17 gi|298674488|ref|YP_003726238.1| - 0.0013 18.7 48.4 0.034 14.1 13.8 4.7 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.4 gi|298674488|ref|YP_003726238.1| - 0.0013 18.5 23.8 0.0013 18.5 16.5 3.2 2 1 1 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_DNA_bd PF12329.3 gi|298674488|ref|YP_003726238.1| - 0.0034 17.1 1.7 0.0034 17.1 1.1 5.8 3 2 2 5 5 5 1 TATA element modulatory factor 1 DNA binding DUF1633 PF07794.6 gi|298674488|ref|YP_003726238.1| - 0.0072 14.3 1.2 0.0072 14.3 0.8 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1633) Filament PF00038.16 gi|298674488|ref|YP_003726238.1| - 0.011 15.2 46.7 0.043 13.2 32.4 2.1 1 1 0 1 1 1 0 Intermediate filament protein ADIP PF11559.3 gi|298674488|ref|YP_003726238.1| - 0.014 15.3 5.5 0.014 15.3 3.8 3.9 1 1 3 4 4 3 0 Afadin- and alpha -actinin-Binding IL5 PF02025.10 gi|298674488|ref|YP_003726238.1| - 0.014 15.3 1.3 0.014 15.3 0.9 2.4 2 0 0 2 2 2 0 Interleukin 5 DUF1871 PF08958.5 gi|298674488|ref|YP_003726238.1| - 0.021 14.8 0.1 0.059 13.4 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1871) Laminin_I PF06008.9 gi|298674488|ref|YP_003726238.1| - 0.026 13.8 42.1 0.0091 15.3 10.5 2.3 1 1 1 2 2 2 0 Laminin Domain I Atg14 PF10186.4 gi|298674488|ref|YP_003726238.1| - 0.027 13.4 47.7 0.014 14.3 6.1 3.6 1 1 3 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Myosin_tail_1 PF01576.14 gi|298674488|ref|YP_003726238.1| - 0.03 12.0 52.5 0.089 10.4 23.2 2.3 1 1 1 2 2 2 0 Myosin tail GTP_EFTU PF00009.22 gi|298674488|ref|YP_003726238.1| - 0.036 13.4 0.1 0.036 13.4 0.1 2.4 2 2 0 2 2 2 0 Elongation factor Tu GTP binding domain DUF1192 PF06698.6 gi|298674488|ref|YP_003726238.1| - 0.062 13.1 0.1 0.062 13.1 0.1 5.6 4 2 3 7 7 6 0 Protein of unknown function (DUF1192) MscS_porin PF12795.2 gi|298674488|ref|YP_003726238.1| - 0.087 12.1 51.0 0.78 9.0 20.1 3.8 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain WEMBL PF05701.6 gi|298674488|ref|YP_003726238.1| - 0.15 10.4 41.5 0.25 9.7 27.9 2.1 1 1 0 1 1 1 0 Weak chloroplast movement under blue light AAA_13 PF13166.1 gi|298674488|ref|YP_003726238.1| - 0.17 10.2 50.7 0.12 10.8 11.9 2.4 1 1 1 2 2 2 0 AAA domain DUF972 PF06156.8 gi|298674488|ref|YP_003726238.1| - 0.19 12.1 46.0 1.3 9.3 5.6 5.0 1 1 2 3 3 2 0 Protein of unknown function (DUF972) Bacillus_HBL PF05791.6 gi|298674488|ref|YP_003726238.1| - 0.23 10.8 42.7 0.089 12.1 4.3 3.7 1 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF4200 PF13863.1 gi|298674488|ref|YP_003726238.1| - 0.25 11.2 55.4 0.034 14.0 6.2 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|298674488|ref|YP_003726238.1| - 0.3 10.8 36.9 4.3 7.0 2.1 3.6 1 1 1 3 3 3 0 Laminin Domain II DUF4201 PF13870.1 gi|298674488|ref|YP_003726238.1| - 0.45 9.9 50.9 0.024 14.0 5.6 3.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) GAS PF13851.1 gi|298674488|ref|YP_003726238.1| - 0.5 9.5 56.9 0.42 9.7 26.0 3.2 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding HCMV_UL139 PF12507.3 gi|298674488|ref|YP_003726238.1| - 0.76 9.9 16.2 2.7 8.1 0.3 3.5 2 1 1 3 3 3 0 Human Cytomegalovirus UL139 protein DUF4618 PF15397.1 gi|298674488|ref|YP_003726238.1| - 0.84 8.9 37.1 0.017 14.4 3.8 4.3 1 1 1 2 2 1 0 Domain of unknown function (DUF4618) DUF948 PF06103.6 gi|298674488|ref|YP_003726238.1| - 1 9.2 22.2 1.7 8.5 1.0 5.1 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|298674488|ref|YP_003726238.1| - 1 7.9 49.8 2.6 6.6 17.3 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein NPV_P10 PF05531.7 gi|298674488|ref|YP_003726238.1| - 1.2 9.4 30.3 15 5.8 7.8 5.6 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|298674488|ref|YP_003726238.1| - 1.4 8.5 50.3 6.4 6.3 15.1 3.9 1 1 2 3 3 3 0 IncA protein Tropomyosin_1 PF12718.2 gi|298674488|ref|YP_003726238.1| - 1.4 8.7 56.6 3.5 7.4 6.2 4.1 1 1 1 3 3 3 0 Tropomyosin like CALCOCO1 PF07888.6 gi|298674488|ref|YP_003726238.1| - 1.4 7.0 41.2 0.48 8.6 16.9 2.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like ERM PF00769.14 gi|298674488|ref|YP_003726238.1| - 1.7 8.1 43.0 1.7e+02 1.5 29.5 2.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family MCPsignal PF00015.16 gi|298674488|ref|YP_003726238.1| - 2.3 7.7 15.4 5.7 6.4 0.7 2.8 2 2 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain APG6 PF04111.7 gi|298674488|ref|YP_003726238.1| - 3 6.8 54.6 0.46 9.4 15.5 3.1 1 1 2 3 3 3 0 Autophagy protein Apg6 DUF3338 PF11819.3 gi|298674488|ref|YP_003726238.1| - 3.1 7.2 20.5 3.2 7.2 3.8 3.9 2 1 0 3 3 3 0 Domain of unknown function (DUF3338) TBPIP PF07106.8 gi|298674488|ref|YP_003726238.1| - 3.3 7.2 54.8 0.75 9.3 13.3 4.4 1 1 3 4 4 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4559 PF15112.1 gi|298674488|ref|YP_003726238.1| - 3.9 6.5 39.4 0.05 12.7 8.3 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) CCDC155 PF14662.1 gi|298674488|ref|YP_003726238.1| - 3.9 7.0 43.7 0.31 10.6 16.2 2.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 DUF3708 PF12501.3 gi|298674488|ref|YP_003726238.1| - 4.3 7.1 5.0 12 5.6 0.2 2.9 2 1 1 3 3 3 0 Phosphate ATP-binding cassette transporter DUF4407 PF14362.1 gi|298674488|ref|YP_003726238.1| - 5.5 5.8 32.6 5.4 5.8 12.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) FlxA PF14282.1 gi|298674488|ref|YP_003726238.1| - 6.4 6.7 53.7 0.56 10.1 14.4 4.5 2 2 2 4 4 4 0 FlxA-like protein bZIP_1 PF00170.16 gi|298674488|ref|YP_003726238.1| - 6.8 6.7 38.2 0.99 9.4 0.1 6.4 2 2 5 8 8 8 0 bZIP transcription factor DUF1664 PF07889.7 gi|298674488|ref|YP_003726238.1| - 9.4 6.0 31.5 2.5 7.9 3.7 4.3 1 1 1 4 4 4 0 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|298674489|ref|YP_003726239.1| - 1.3e-05 23.9 26.4 1.5e-05 23.7 18.3 1.0 1 0 0 1 1 1 1 AAA domain Cortex-I_coil PF09304.5 gi|298674489|ref|YP_003726239.1| - 0.0018 18.2 22.9 0.38 10.8 0.4 3.2 1 1 2 3 3 3 2 Cortexillin I, coiled coil GAS PF13851.1 gi|298674489|ref|YP_003726239.1| - 0.012 14.8 26.7 0.024 13.8 6.7 2.2 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Nup54 PF13874.1 gi|298674489|ref|YP_003726239.1| - 0.021 14.4 13.9 0.2 11.3 0.6 2.8 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Mnd1 PF03962.10 gi|298674489|ref|YP_003726239.1| - 0.024 14.3 21.1 0.047 13.3 6.8 2.7 1 1 1 2 2 2 0 Mnd1 family KLRAQ PF10205.4 gi|298674489|ref|YP_003726239.1| - 0.024 14.6 0.2 0.024 14.6 0.1 3.2 1 1 0 2 2 1 0 Predicted coiled-coil domain-containing protein Fib_alpha PF08702.5 gi|298674489|ref|YP_003726239.1| - 0.027 14.5 23.8 0.2 11.7 8.8 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Filament PF00038.16 gi|298674489|ref|YP_003726239.1| - 0.028 13.8 21.4 0.43 9.9 4.5 2.2 1 1 1 2 2 2 0 Intermediate filament protein PilJ PF13675.1 gi|298674489|ref|YP_003726239.1| - 0.031 14.5 5.7 1.3 9.3 0.2 3.1 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Syntaxin_2 PF14523.1 gi|298674489|ref|YP_003726239.1| - 0.041 13.8 22.1 0.047 13.7 5.5 2.5 1 1 1 2 2 2 0 Syntaxin-like protein Med14 PF08638.6 gi|298674489|ref|YP_003726239.1| - 0.073 12.3 4.2 0.12 11.5 1.6 2.3 1 1 1 2 2 2 0 Mediator complex subunit MED14 NPV_P10 PF05531.7 gi|298674489|ref|YP_003726239.1| - 0.12 12.5 12.1 29 4.9 4.1 3.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF2785 PF10978.3 gi|298674489|ref|YP_003726239.1| - 0.12 11.7 2.2 0.11 11.8 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) Spectrin PF00435.16 gi|298674489|ref|YP_003726239.1| - 0.13 12.6 16.5 1 9.6 2.5 2.8 1 1 0 2 2 2 0 Spectrin repeat GlnE PF03710.10 gi|298674489|ref|YP_003726239.1| - 0.14 11.4 1.8 0.17 11.1 1.0 1.4 1 1 0 1 1 1 0 Glutamate-ammonia ligase adenylyltransferase Sec34 PF04136.10 gi|298674489|ref|YP_003726239.1| - 0.14 11.8 16.1 0.1 12.2 6.7 2.3 1 1 1 2 2 2 0 Sec34-like family WXG100 PF06013.7 gi|298674489|ref|YP_003726239.1| - 0.18 11.8 6.5 1.5 8.8 0.6 3.6 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DUF745 PF05335.8 gi|298674489|ref|YP_003726239.1| - 0.18 11.2 11.6 1.4 8.4 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF607 PF04678.8 gi|298674489|ref|YP_003726239.1| - 0.21 11.4 10.6 0.097 12.5 0.5 2.6 1 1 2 3 3 3 0 Protein of unknown function, DUF607 TBPIP PF07106.8 gi|298674489|ref|YP_003726239.1| - 0.24 10.9 26.8 1.5 8.3 11.2 2.6 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF948 PF06103.6 gi|298674489|ref|YP_003726239.1| - 0.26 11.1 11.7 4.3 7.2 0.2 4.0 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Occludin_ELL PF07303.8 gi|298674489|ref|YP_003726239.1| - 0.29 11.8 19.9 0.66 10.7 0.6 3.4 1 1 3 4 4 4 0 Occludin homology domain Spc7 PF08317.6 gi|298674489|ref|YP_003726239.1| - 0.29 9.7 28.3 2.7 6.5 13.7 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF2203 PF09969.4 gi|298674489|ref|YP_003726239.1| - 0.35 11.1 17.2 0.61 10.3 0.9 3.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Snapin_Pallidin PF14712.1 gi|298674489|ref|YP_003726239.1| - 0.36 11.1 18.2 1.4 9.2 1.8 3.7 1 1 2 3 3 3 0 Snapin/Pallidin Val_tRNA-synt_C PF10458.4 gi|298674489|ref|YP_003726239.1| - 0.46 10.5 10.5 1.5 8.9 0.3 4.1 4 1 1 5 5 4 0 Valyl tRNA synthetase tRNA binding arm TPR_MLP1_2 PF07926.7 gi|298674489|ref|YP_003726239.1| - 0.59 9.8 25.5 1.7 8.4 7.0 2.8 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Uds1 PF15456.1 gi|298674489|ref|YP_003726239.1| - 0.67 9.9 18.3 7.4 6.5 0.1 3.0 1 1 0 2 2 2 0 Up-regulated During Septation Seryl_tRNA_N PF02403.17 gi|298674489|ref|YP_003726239.1| - 0.71 9.9 27.2 3.3 7.7 2.2 3.3 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF972 PF06156.8 gi|298674489|ref|YP_003726239.1| - 1.2 9.4 18.3 4.4 7.7 1.8 3.2 1 1 0 2 2 2 0 Protein of unknown function (DUF972) FbpA PF05833.6 gi|298674489|ref|YP_003726239.1| - 1.6 7.2 27.9 5.3 5.4 19.3 1.6 1 1 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) IncA PF04156.9 gi|298674489|ref|YP_003726239.1| - 1.6 8.2 27.4 2.5 7.6 12.4 2.3 1 1 1 2 2 2 0 IncA protein Phage_GP20 PF06810.6 gi|298674489|ref|YP_003726239.1| - 1.8 8.0 27.9 0.4 10.1 0.6 3.4 1 1 1 3 3 3 0 Phage minor structural protein GP20 CAMP_factor PF07373.6 gi|298674489|ref|YP_003726239.1| - 1.8 7.9 17.1 3.6 7.0 2.2 3.3 1 1 2 3 3 3 0 CAMP factor (Cfa) Reo_sigmaC PF04582.7 gi|298674489|ref|YP_003726239.1| - 2.2 7.3 8.0 6.4 5.8 2.4 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Tropomyosin_1 PF12718.2 gi|298674489|ref|YP_003726239.1| - 2.3 8.0 26.8 0.33 10.7 1.9 3.1 1 1 1 3 3 3 0 Tropomyosin like FlaC_arch PF05377.6 gi|298674489|ref|YP_003726239.1| - 2.4 8.1 20.7 3.8 7.4 2.4 4.7 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) Muted PF14942.1 gi|298674489|ref|YP_003726239.1| - 2.6 7.9 18.0 2 8.3 5.1 2.2 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Z1 PF10593.4 gi|298674489|ref|YP_003726239.1| - 2.8 7.1 17.2 0.3 10.2 5.1 2.1 1 1 1 2 2 2 0 Z1 domain Syntaxin-6_N PF09177.6 gi|298674489|ref|YP_003726239.1| - 2.8 8.3 23.3 1.9 8.9 1.8 3.6 1 1 2 3 3 3 0 Syntaxin 6, N-terminal SlyX PF04102.7 gi|298674489|ref|YP_003726239.1| - 3 8.2 14.0 6.5 7.2 0.2 4.0 3 1 1 4 4 4 0 SlyX Peroxidase_2 PF01328.12 gi|298674489|ref|YP_003726239.1| - 4.4 5.8 7.6 1.5 7.4 1.1 2.0 1 1 1 2 2 2 0 Peroxidase, family 2 Prominin PF05478.6 gi|298674489|ref|YP_003726239.1| - 4.5 4.6 15.0 32 1.8 10.5 1.8 1 1 0 1 1 1 0 Prominin Syntaxin PF00804.20 gi|298674489|ref|YP_003726239.1| - 4.7 7.4 29.0 5.4 7.2 6.6 3.0 1 1 1 2 2 2 0 Syntaxin Glutaredoxin2_C PF04399.8 gi|298674489|ref|YP_003726239.1| - 4.8 6.7 7.5 1.8 8.1 0.4 2.9 1 1 1 3 3 3 0 Glutaredoxin 2, C terminal domain Kinetocho_Slk19 PF12709.2 gi|298674489|ref|YP_003726239.1| - 5 7.2 21.0 0.15 12.1 1.0 3.8 2 1 2 4 4 4 0 Central kinetochore-associated DUF4446 PF14584.1 gi|298674489|ref|YP_003726239.1| - 5.4 6.8 17.3 1.6 8.5 0.8 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Exonuc_VII_L PF02601.10 gi|298674489|ref|YP_003726239.1| - 5.8 6.0 21.5 11 5.0 14.9 1.4 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF883 PF05957.8 gi|298674489|ref|YP_003726239.1| - 5.8 7.3 7.6 7.5 7.0 1.7 2.8 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) V_ATPase_I PF01496.14 gi|298674489|ref|YP_003726239.1| - 5.9 4.6 23.9 4.3 5.0 6.4 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF1664 PF07889.7 gi|298674489|ref|YP_003726239.1| - 6.3 6.6 18.0 5.4 6.8 1.9 2.7 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) Erf4 PF10256.4 gi|298674489|ref|YP_003726239.1| - 8.6 6.2 8.9 37 4.2 0.3 3.4 1 1 2 3 3 3 0 Golgin subfamily A member 7/ERF4 family DUF651 PF04895.7 gi|298674489|ref|YP_003726239.1| - 9 5.9 8.6 3.4 7.3 0.7 3.2 1 1 2 3 3 3 0 Archaeal protein of unknown function (DUF651) V-SNARE PF05008.10 gi|298674489|ref|YP_003726239.1| - 9.2 6.5 26.3 2.4 8.3 0.5 4.8 1 1 3 4 4 4 0 Vesicle transport v-SNARE protein N-terminus DUF424 PF04242.8 gi|298674490|ref|YP_003726240.1| - 6.4e-30 103.0 0.4 7.1e-30 102.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MCM PF00493.18 gi|298674491|ref|YP_003726241.1| - 4.4e-124 413.5 0.4 1.3e-63 214.8 0.0 2.3 2 0 0 2 2 2 2 MCM2/3/5 family MCM_N PF14551.1 gi|298674491|ref|YP_003726241.1| - 2.8e-19 69.7 0.3 2.7e-18 66.6 0.1 2.7 3 1 0 3 3 3 1 MCM N-terminal domain LAGLIDADG_3 PF14528.1 gi|298674491|ref|YP_003726241.1| - 5.3e-07 29.7 0.1 0.012 15.7 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain AAA_5 PF07728.9 gi|298674491|ref|YP_003726241.1| - 0.00031 20.4 0.0 0.00081 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SpoU_methylase PF00588.14 gi|298674492|ref|YP_003726242.1| - 8.6e-33 113.2 0.0 1.2e-32 112.7 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|298674492|ref|YP_003726242.1| - 0.00013 21.5 0.0 0.00075 19.0 0.0 2.0 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Ldh_1_N PF00056.18 gi|298674492|ref|YP_003726242.1| - 0.024 14.4 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain OTCace PF00185.19 gi|298674492|ref|YP_003726242.1| - 0.049 13.5 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fer4 PF00037.22 gi|298674493|ref|YP_003726243.1| - 2.9e-11 42.4 14.6 1e-05 24.9 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674493|ref|YP_003726243.1| - 2.3e-10 40.1 8.4 3.2e-10 39.6 5.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674493|ref|YP_003726243.1| - 2.5e-10 40.5 22.1 3.2e-08 33.8 7.7 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674493|ref|YP_003726243.1| - 3.4e-10 39.2 12.2 8.9e-07 28.4 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674493|ref|YP_003726243.1| - 8.8e-10 38.0 11.6 9.7e-06 25.2 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674493|ref|YP_003726243.1| - 5.4e-09 35.7 6.0 6.5e-09 35.5 4.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674493|ref|YP_003726243.1| - 2.8e-08 33.8 22.6 4.6e-07 29.9 7.3 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298674493|ref|YP_003726243.1| - 3.1e-07 30.8 7.1 1.9e-06 28.3 0.1 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|298674493|ref|YP_003726243.1| - 4.4e-07 29.8 9.1 7.2e-07 29.1 6.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674493|ref|YP_003726243.1| - 7.8e-06 25.8 15.2 0.0083 16.3 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674493|ref|YP_003726243.1| - 9.2e-06 26.0 9.3 0.015 15.6 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298674493|ref|YP_003726243.1| - 3.2e-05 24.2 7.2 0.00014 22.2 0.2 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298674493|ref|YP_003726243.1| - 0.00036 20.8 18.2 0.03 14.8 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298674493|ref|YP_003726243.1| - 0.00042 20.9 10.4 0.057 14.1 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|298674493|ref|YP_003726243.1| - 0.0022 18.2 13.8 0.17 12.2 2.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain NapB PF03892.9 gi|298674493|ref|YP_003726243.1| - 0.085 12.5 1.5 0.11 12.1 1.0 1.2 1 0 0 1 1 1 0 Nitrate reductase cytochrome c-type subunit (NapB) zf-PHD-like PF15446.1 gi|298674493|ref|YP_003726243.1| - 0.15 11.3 3.4 0.19 10.9 2.4 1.1 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain Fer4_19 PF06902.6 gi|298674493|ref|YP_003726243.1| - 0.89 9.4 6.7 0.78 9.6 0.5 2.2 1 1 1 2 2 2 0 Divergent 4Fe-4S mono-cluster NIR_SIR PF01077.17 gi|298674494|ref|YP_003726244.1| - 2.3e-36 124.5 0.0 3.2e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|298674494|ref|YP_003726244.1| - 9.1e-17 60.4 0.0 1.4e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain S-layer PF07752.6 gi|298674495|ref|YP_003726245.1| - 5.4e-152 504.2 47.7 2.6e-78 262.7 13.1 2.7 3 0 0 3 3 3 2 S-layer protein CarboxypepD_reg PF13620.1 gi|298674495|ref|YP_003726245.1| - 2.6e-07 30.5 16.3 0.00067 19.6 0.6 4.6 2 1 2 4 4 4 2 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|298674495|ref|YP_003726245.1| - 3.1e-07 30.0 6.7 0.003 17.3 0.4 4.2 3 1 1 4 4 4 2 PEGA domain DUF4198 PF10670.4 gi|298674495|ref|YP_003726245.1| - 6.6e-07 29.5 5.1 0.0066 16.4 0.2 3.6 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) CARDB PF07705.6 gi|298674495|ref|YP_003726245.1| - 8.1e-07 29.0 1.3 8.1e-07 29.0 0.9 4.3 3 1 0 4 4 4 1 CARDB A2M_N_2 PF07703.9 gi|298674495|ref|YP_003726245.1| - 2.3e-05 24.1 1.2 0.00035 20.3 0.2 2.4 2 0 0 2 2 2 1 Alpha-2-macroglobulin family N-terminal region Big_1 PF02369.11 gi|298674495|ref|YP_003726245.1| - 5.9e-05 22.9 19.7 0.0059 16.4 0.2 4.2 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) PKD PF00801.15 gi|298674495|ref|YP_003726245.1| - 0.0011 18.6 8.5 0.34 10.6 0.3 4.4 3 1 0 3 3 3 2 PKD domain BiPBP_C PF06832.7 gi|298674495|ref|YP_003726245.1| - 0.0017 18.2 0.0 0.11 12.4 0.0 3.2 3 0 0 3 3 3 1 Penicillin-Binding Protein C-terminus Family Hemocyanin_M PF00372.14 gi|298674495|ref|YP_003726245.1| - 0.0022 17.3 1.3 0.65 9.2 0.0 2.3 2 0 0 2 2 2 2 Hemocyanin, copper containing domain PrcB_C PF14343.1 gi|298674495|ref|YP_003726245.1| - 0.0023 17.5 1.7 2.4 7.9 0.0 3.4 4 0 0 4 4 4 2 PrcB C-terminal DUF4480 PF13715.1 gi|298674495|ref|YP_003726245.1| - 0.012 15.6 13.4 0.23 11.5 0.8 4.8 4 1 1 5 5 5 0 Domain of unknown function (DUF4480) DUF2606 PF10794.4 gi|298674495|ref|YP_003726245.1| - 0.021 14.2 1.8 2.2 7.7 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2606) Fil_haemagg_2 PF13332.1 gi|298674495|ref|YP_003726245.1| - 0.31 10.8 10.8 0.32 10.7 1.1 3.5 3 0 0 3 3 3 0 Haemagluttinin repeat HAD_2 PF13419.1 gi|298674496|ref|YP_003726246.1| - 8.5e-28 97.7 0.0 9.7e-28 97.5 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|298674496|ref|YP_003726246.1| - 8e-08 32.9 0.1 2.4e-06 28.1 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|298674496|ref|YP_003726246.1| - 3.2e-05 24.1 0.0 3.6e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|298674496|ref|YP_003726246.1| - 0.00074 19.1 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like NIF PF03031.13 gi|298674496|ref|YP_003726246.1| - 0.0069 16.0 0.0 0.085 12.5 0.0 2.1 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase PAZ_siRNAbind PF12212.3 gi|298674496|ref|YP_003726246.1| - 0.057 13.0 3.2 0.67 9.6 0.3 2.7 1 1 1 2 2 2 0 Piwi/Argonaute/Zwille siRNA-binding domain DUF2179 PF10035.4 gi|298674496|ref|YP_003726246.1| - 0.12 12.0 0.2 0.35 10.5 0.2 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) DUF72 PF01904.13 gi|298674497|ref|YP_003726247.1| - 5.4e-69 232.4 0.2 6.1e-69 232.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Nitrate_red_gam PF02665.9 gi|298674498|ref|YP_003726248.1| - 3.2e-05 23.3 11.7 0.0021 17.4 2.7 2.6 2 1 0 2 2 2 2 Nitrate reductase gamma subunit BNIP3 PF06553.7 gi|298674498|ref|YP_003726248.1| - 0.12 11.7 0.7 0.17 11.2 0.0 1.5 2 0 0 2 2 2 0 BNIP3 CCG PF02754.11 gi|298674499|ref|YP_003726249.1| - 3.7e-37 126.1 2.4 4.8e-18 64.9 0.0 2.9 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|298674499|ref|YP_003726249.1| - 1.1e-10 41.3 3.3 1.1e-10 41.3 2.3 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674499|ref|YP_003726249.1| - 3.8e-09 36.7 3.9 3.8e-09 36.7 2.7 3.0 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674499|ref|YP_003726249.1| - 2.6e-08 34.1 4.6 2.6e-08 34.1 3.2 2.5 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674499|ref|YP_003726249.1| - 3.3e-07 30.4 12.3 0.0012 19.0 0.6 3.7 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674499|ref|YP_003726249.1| - 3.9e-07 30.3 10.6 0.0073 16.7 0.5 4.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674499|ref|YP_003726249.1| - 4.1e-07 29.7 7.1 4.1e-07 29.7 4.9 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674499|ref|YP_003726249.1| - 0.00037 21.1 7.9 0.00037 21.1 5.4 2.6 2 1 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|298674499|ref|YP_003726249.1| - 0.01 15.7 1.6 0.01 15.7 1.1 4.0 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298674499|ref|YP_003726249.1| - 0.018 15.5 3.9 0.018 15.5 2.7 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4 PF00037.22 gi|298674499|ref|YP_003726249.1| - 0.028 14.0 1.7 0.028 14.0 1.2 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674499|ref|YP_003726249.1| - 0.029 14.2 13.0 0.15 11.9 0.4 3.3 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298674499|ref|YP_003726249.1| - 0.19 12.2 8.4 1.7 9.2 0.2 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|298674499|ref|YP_003726249.1| - 8.8 6.3 24.7 0.12 12.3 1.0 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain UBA_2 PF08587.6 gi|298674500|ref|YP_003726250.1| - 0.025 14.7 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) MecA_N PF05223.6 gi|298674501|ref|YP_003726251.1| - 0.00046 20.2 0.2 0.00064 19.7 0.1 1.1 1 0 0 1 1 1 1 NTF2-like N-terminal transpeptidase domain Lumazine_bd PF12870.2 gi|298674501|ref|YP_003726251.1| - 0.052 13.5 0.6 0.17 11.9 0.4 1.8 1 1 0 1 1 1 0 Lumazine-binding domain DUF116 PF01976.12 gi|298674502|ref|YP_003726252.1| - 1.5e-44 151.3 9.4 1.8e-44 151.0 6.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 YjgP_YjgQ PF03739.9 gi|298674502|ref|YP_003726252.1| - 0.18 10.5 2.9 0.25 10.0 2.0 1.2 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Zip PF02535.17 gi|298674502|ref|YP_003726252.1| - 5.4 5.9 5.1 8.3 5.3 3.6 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter DUF116 PF01976.12 gi|298674503|ref|YP_003726253.1| - 1.5e-39 135.0 1.0 1.9e-39 134.6 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 zf-HYPF PF07503.7 gi|298674503|ref|YP_003726253.1| - 0.2 11.0 1.5 0.34 10.3 1.0 1.3 1 0 0 1 1 1 0 HypF finger Dus PF01207.12 gi|298674504|ref|YP_003726254.1| - 1.6e-17 63.3 0.2 4.1e-17 61.9 0.1 1.6 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|298674504|ref|YP_003726254.1| - 3.3e-08 33.0 0.6 3.1e-07 29.8 0.1 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|298674504|ref|YP_003726254.1| - 3.9e-08 32.5 0.7 5.4e-08 32.1 0.5 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain Oxidored_FMN PF00724.15 gi|298674504|ref|YP_003726254.1| - 0.0011 18.1 0.1 0.011 14.7 0.0 2.4 2 1 1 3 3 3 1 NADH:flavin oxidoreductase / NADH oxidase family TPP_enzyme_M PF00205.17 gi|298674504|ref|YP_003726254.1| - 0.098 12.4 0.8 1.1 9.0 0.0 2.5 2 1 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain CitG PF01874.11 gi|298674505|ref|YP_003726255.1| - 1.7e-83 280.0 0.0 1.9e-83 279.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase ADIP PF11559.3 gi|298674505|ref|YP_003726255.1| - 0.017 15.0 0.4 1 9.2 0.1 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF447 PF04289.7 gi|298674506|ref|YP_003726256.1| - 2.3e-51 173.8 0.2 2.6e-51 173.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) RPM2 PF08579.6 gi|298674506|ref|YP_003726256.1| - 0.047 13.8 1.5 0.21 11.7 0.3 2.3 1 1 0 2 2 2 0 Mitochondrial ribonuclease P subunit (RPM2) Pyridox_ox_2 PF12900.2 gi|298674506|ref|YP_003726256.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase PHP_C PF13263.1 gi|298674507|ref|YP_003726257.1| - 2.4e-17 62.1 0.0 6.6e-17 60.7 0.0 1.8 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|298674507|ref|YP_003726257.1| - 2.7e-17 63.1 0.1 3.6e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 PHP domain DbpA PF03880.10 gi|298674507|ref|YP_003726257.1| - 0.0013 18.3 0.1 0.0079 15.8 0.0 2.2 2 0 0 2 2 2 1 DbpA RNA binding domain TatD_DNase PF01026.16 gi|298674507|ref|YP_003726257.1| - 0.0059 15.8 0.0 0.0085 15.3 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase MMR_HSR1 PF01926.18 gi|298674508|ref|YP_003726258.1| - 3.9e-21 75.1 0.0 9.2e-21 73.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|298674508|ref|YP_003726258.1| - 2.5e-14 53.1 0.2 7.2e-14 51.6 0.2 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|298674508|ref|YP_003726258.1| - 6.3e-10 38.5 0.9 1.1e-09 37.7 0.1 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|298674508|ref|YP_003726258.1| - 4.7e-08 32.6 0.0 3.4e-06 26.6 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Gtr1_RagA PF04670.7 gi|298674508|ref|YP_003726258.1| - 0.00036 19.7 0.6 0.025 13.7 0.0 2.4 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|298674508|ref|YP_003726258.1| - 0.0013 18.5 0.8 0.033 14.0 0.0 2.6 2 1 1 3 3 3 1 Dynamin family cobW PF02492.14 gi|298674508|ref|YP_003726258.1| - 0.0036 16.7 2.5 0.39 10.1 0.4 3.4 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|298674508|ref|YP_003726258.1| - 0.0046 16.1 0.0 0.082 12.0 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function, DUF258 GBP PF02263.14 gi|298674508|ref|YP_003726258.1| - 0.017 14.1 0.2 2.1 7.3 0.1 2.4 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain DDR PF08841.5 gi|298674508|ref|YP_003726258.1| - 0.028 13.2 0.0 0.046 12.5 0.0 1.3 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain AHH PF14412.1 gi|298674508|ref|YP_003726258.1| - 0.029 14.3 0.2 0.15 12.0 0.1 2.2 2 0 0 2 2 2 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH ABC_tran PF00005.22 gi|298674508|ref|YP_003726258.1| - 0.069 13.4 0.1 0.31 11.3 0.0 2.1 1 1 0 2 2 2 0 ABC transporter ATP_bind_1 PF03029.12 gi|298674508|ref|YP_003726258.1| - 0.083 12.4 0.1 0.34 10.3 0.0 2.0 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|298674508|ref|YP_003726258.1| - 0.092 13.2 0.0 0.46 10.9 0.0 2.3 1 1 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|298674508|ref|YP_003726258.1| - 0.34 11.1 15.3 3 8.1 4.1 3.0 2 1 1 3 3 3 0 AAA domain DUF2209 PF09974.4 gi|298674509|ref|YP_003726259.1| - 2.3e-54 182.8 1.4 2.6e-54 182.7 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) DUF464 PF04327.7 gi|298674509|ref|YP_003726259.1| - 0.11 12.7 0.5 0.18 12.0 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF464) tRNA_int_endo PF01974.12 gi|298674510|ref|YP_003726260.1| - 1.3e-46 156.3 0.2 7.6e-25 86.5 0.1 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|298674510|ref|YP_003726260.1| - 2.8e-38 129.2 0.6 1.8e-19 69.0 0.3 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|298674510|ref|YP_003726260.1| - 0.0022 18.1 0.0 0.0058 16.8 0.0 1.7 2 0 0 2 2 2 1 Sen15 protein Spexin PF15171.1 gi|298674510|ref|YP_003726260.1| - 0.077 13.0 0.0 0.42 10.6 0.0 2.2 2 0 0 2 2 2 0 Neuropeptide secretory protein family, NPQ, spexin GATase_3 PF07685.9 gi|298674511|ref|YP_003726261.1| - 5.6e-30 104.0 1.2 8.8e-30 103.3 0.8 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|298674511|ref|YP_003726261.1| - 4.4e-22 78.4 0.1 6.9e-22 77.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|298674511|ref|YP_003726261.1| - 1.2e-15 57.6 0.3 6e-13 48.8 0.2 3.0 2 1 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|298674512|ref|YP_003726262.1| - 6.2e-91 304.3 1.8 7.4e-91 304.1 1.3 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|298674512|ref|YP_003726262.1| - 5.3e-12 45.5 0.0 2.1e-11 43.6 0.0 1.8 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|298674512|ref|YP_003726262.1| - 7.7e-07 28.4 1.4 1.4e-06 27.5 0.2 2.0 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|298674512|ref|YP_003726262.1| - 1.3e-05 25.1 0.0 2.8e-05 24.0 0.0 1.5 2 0 0 2 2 1 1 AAA domain ArgK PF03308.11 gi|298674512|ref|YP_003726262.1| - 0.0001 21.1 0.1 0.00017 20.4 0.0 1.3 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|298674512|ref|YP_003726262.1| - 0.0012 17.9 0.2 0.02 13.9 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ AAA_10 PF12846.2 gi|298674512|ref|YP_003726262.1| - 0.0014 18.1 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|298674512|ref|YP_003726262.1| - 0.0016 18.0 0.0 0.19 11.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|298674512|ref|YP_003726262.1| - 0.0018 17.7 0.1 0.0053 16.2 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|298674512|ref|YP_003726262.1| - 0.0033 17.4 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DAP3 PF10236.4 gi|298674512|ref|YP_003726262.1| - 0.016 14.1 0.1 0.027 13.4 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_25 PF13481.1 gi|298674512|ref|YP_003726262.1| - 0.018 14.4 0.3 0.044 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|298674512|ref|YP_003726262.1| - 0.033 13.0 0.0 0.066 12.0 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|298674512|ref|YP_003726262.1| - 0.039 13.6 0.1 0.091 12.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CPSase_L_chain PF00289.17 gi|298674512|ref|YP_003726262.1| - 0.062 13.3 0.0 2.8 8.1 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP_bind_1 PF03029.12 gi|298674512|ref|YP_003726262.1| - 0.081 12.4 0.2 3.5 7.0 0.1 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|298674512|ref|YP_003726262.1| - 0.098 12.2 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|298674512|ref|YP_003726262.1| - 0.099 12.0 0.2 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|298674512|ref|YP_003726262.1| - 0.1 12.7 0.1 1.6 8.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain Oxidored_nitro PF00148.14 gi|298674513|ref|YP_003726263.1| - 1.9e-16 59.7 0.1 3.9e-16 58.6 0.0 1.4 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SHOCT PF09851.4 gi|298674513|ref|YP_003726263.1| - 0.027 13.9 0.2 0.056 12.9 0.1 1.5 1 0 0 1 1 1 0 Short C-terminal domain Mur_ligase_M PF08245.7 gi|298674514|ref|YP_003726264.1| - 3.7e-06 27.1 0.0 1.3e-05 25.3 0.0 1.9 1 1 0 1 1 1 1 Mur ligase middle domain HEM4 PF02602.10 gi|298674514|ref|YP_003726264.1| - 0.002 17.4 0.0 0.012 14.8 0.0 2.2 3 0 0 3 3 3 1 Uroporphyrinogen-III synthase HemD DUF4041 PF13250.1 gi|298674514|ref|YP_003726264.1| - 0.026 14.0 0.4 0.24 10.9 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4041) MOSP_C PF02722.10 gi|298674514|ref|YP_003726264.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Major Outer Sheath Protein C-terminal region CbiX PF01903.12 gi|298674515|ref|YP_003726265.1| - 2e-29 101.7 0.0 2.3e-29 101.5 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|298674515|ref|YP_003726265.1| - 8.9e-07 28.2 0.0 9.2e-07 28.2 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|298674515|ref|YP_003726265.1| - 0.0022 17.0 0.0 0.0027 16.7 0.0 1.1 1 0 0 1 1 1 1 Ferrochelatase Glycos_transf_1 PF00534.15 gi|298674516|ref|YP_003726266.1| - 1.1e-32 112.7 0.0 2.3e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|298674516|ref|YP_003726266.1| - 5.3e-20 72.1 0.0 7.5e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|298674516|ref|YP_003726266.1| - 6.3e-17 61.8 1.0 4.5e-14 52.5 0.7 2.3 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|298674516|ref|YP_003726266.1| - 1.3e-16 60.9 0.2 5.5e-16 58.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|298674516|ref|YP_003726266.1| - 2.1e-14 53.6 0.1 5.7e-14 52.2 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|298674516|ref|YP_003726266.1| - 9.3e-09 35.2 0.0 1.9e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|298674516|ref|YP_003726266.1| - 0.0044 17.2 0.0 0.0094 16.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF2150 PF09920.4 gi|298674517|ref|YP_003726267.1| - 1.8e-69 233.1 12.6 2.1e-69 232.9 8.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF2294 PF10057.4 gi|298674517|ref|YP_003726267.1| - 0.016 14.8 0.4 0.026 14.1 0.3 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) RolB_RolC PF02027.12 gi|298674517|ref|YP_003726267.1| - 0.017 14.3 0.3 0.032 13.3 0.1 1.5 2 0 0 2 2 2 0 RolB/RolC glucosidase family CXCR4_N PF12109.3 gi|298674517|ref|YP_003726267.1| - 0.24 11.2 2.6 0.19 11.5 0.4 1.9 2 0 0 2 2 2 0 CXCR4 Chemokine receptor N terminal UPF0179 PF03684.8 gi|298674518|ref|YP_003726268.1| - 6e-49 165.3 5.4 6.6e-49 165.1 3.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|298674518|ref|YP_003726268.1| - 0.33 10.9 2.9 0.35 10.8 0.2 2.0 2 0 0 2 2 2 0 Transposase DDE domain Fe-ADH_2 PF13685.1 gi|298674519|ref|YP_003726269.1| - 4.7e-71 239.0 4.5 6.3e-71 238.5 3.1 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|298674519|ref|YP_003726269.1| - 2.6e-25 88.8 4.1 3.8e-25 88.3 2.9 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|298674519|ref|YP_003726269.1| - 9.2e-09 34.5 0.2 3.4e-08 32.7 0.2 1.9 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.12 gi|298674520|ref|YP_003726270.1| - 2.1e-98 329.7 24.6 2.4e-98 329.5 17.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Glyco_transf_92 PF01697.22 gi|298674520|ref|YP_003726270.1| - 0.35 10.1 1.8 0.52 9.5 1.3 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 92 DUF95 PF01944.12 gi|298674521|ref|YP_003726271.1| - 1.7e-34 118.9 19.9 2.2e-34 118.5 13.8 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 JmjN PF02375.12 gi|298674521|ref|YP_003726271.1| - 0.021 14.3 0.1 0.072 12.6 0.1 1.9 1 0 0 1 1 1 0 jmjN domain DUF3938 PF13074.1 gi|298674521|ref|YP_003726271.1| - 1.4 8.7 5.1 12 5.8 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3938) DUF1297 PF06973.7 gi|298674522|ref|YP_003726272.1| - 1.5e-77 259.1 0.0 2.1e-77 258.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|298674522|ref|YP_003726272.1| - 2.5e-41 140.3 0.0 4e-41 139.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|298674522|ref|YP_003726272.1| - 0.021 14.5 0.0 3.9 7.1 0.0 2.2 1 1 1 2 2 2 0 ATP-grasp domain SHOCT PF09851.4 gi|298674522|ref|YP_003726272.1| - 0.079 12.4 0.1 0.17 11.3 0.1 1.6 1 0 0 1 1 1 0 Short C-terminal domain GTP_EFTU PF00009.22 gi|298674523|ref|YP_003726273.1| - 7.7e-44 149.3 0.3 1.2e-43 148.7 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|298674523|ref|YP_003726273.1| - 1.9e-29 101.5 0.5 3.4e-29 100.7 0.1 1.7 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|298674523|ref|YP_003726273.1| - 3.9e-06 26.8 0.4 1.1e-05 25.4 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|298674523|ref|YP_003726273.1| - 0.0002 21.2 0.0 0.00052 19.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|298674523|ref|YP_003726273.1| - 0.0029 17.1 3.0 1 8.8 0.0 3.0 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation Nop10p PF04135.7 gi|298674523|ref|YP_003726273.1| - 0.029 14.0 1.9 0.056 13.1 1.3 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family FeoB_N PF02421.13 gi|298674523|ref|YP_003726273.1| - 0.1 11.8 1.2 12 5.1 0.0 2.8 2 1 0 2 2 2 0 Ferrous iron transport protein B Fcf1 PF04900.7 gi|298674524|ref|YP_003726274.1| - 2.2e-10 40.5 0.2 2.9e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|298674524|ref|YP_003726274.1| - 0.00015 21.8 0.7 0.00028 20.9 0.5 1.5 1 1 0 1 1 1 1 PIN domain DUF188 PF02639.9 gi|298674524|ref|YP_003726274.1| - 0.029 13.8 0.3 0.043 13.2 0.2 1.3 1 1 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN PF01850.16 gi|298674524|ref|YP_003726274.1| - 0.057 13.7 0.2 1.1 9.6 0.1 2.2 1 1 0 1 1 1 0 PIN domain SpoVIF PF14069.1 gi|298674524|ref|YP_003726274.1| - 0.11 12.2 0.7 0.18 11.5 0.1 1.6 2 0 0 2 2 2 0 Stage VI sporulation protein F RNase_Zc3h12a PF11977.3 gi|298674524|ref|YP_003726274.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain Mut7-C PF01927.11 gi|298674524|ref|YP_003726274.1| - 0.13 12.2 0.1 0.16 11.9 0.1 1.3 1 1 0 1 1 1 0 Mut7-C RNAse domain SHS2_Rpb7-N PF03876.12 gi|298674525|ref|YP_003726275.1| - 1.4e-18 66.7 0.0 2.3e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|298674525|ref|YP_003726275.1| - 2.1e-10 40.5 0.4 8.8e-10 38.5 0.0 2.0 2 0 0 2 2 2 1 S1 RNA binding domain Spt4 PF06093.8 gi|298674526|ref|YP_003726276.1| - 4.9e-14 51.9 0.2 5.9e-14 51.7 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DUF1272 PF06906.6 gi|298674526|ref|YP_003726276.1| - 0.011 15.5 1.3 0.014 15.1 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Nop10p PF04135.7 gi|298674526|ref|YP_003726276.1| - 0.019 14.6 0.3 0.027 14.2 0.1 1.4 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family PolC_DP2 PF03833.8 gi|298674526|ref|YP_003726276.1| - 0.025 12.2 0.1 0.025 12.2 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 RecR PF02132.10 gi|298674526|ref|YP_003726276.1| - 0.028 13.8 3.3 0.039 13.3 2.3 1.2 1 0 0 1 1 1 0 RecR protein TF_Zn_Ribbon PF08271.7 gi|298674526|ref|YP_003726276.1| - 0.033 13.4 2.9 0.093 12.0 0.4 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|298674526|ref|YP_003726276.1| - 0.12 12.1 2.1 0.15 11.7 1.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|298674526|ref|YP_003726276.1| - 0.14 11.9 2.0 0.27 11.0 1.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_4 PF14570.1 gi|298674526|ref|YP_003726276.1| - 0.21 11.1 1.9 0.3 10.6 1.3 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-ribbon_3 PF13248.1 gi|298674526|ref|YP_003726276.1| - 0.61 9.3 3.2 0.87 8.8 0.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|298674526|ref|YP_003726276.1| - 0.64 10.0 4.5 4.2 7.4 3.1 1.9 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|298674526|ref|YP_003726276.1| - 0.92 9.5 4.3 19 5.3 3.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|298674526|ref|YP_003726276.1| - 1.6 8.5 5.0 13 5.5 0.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal Prim_Zn_Ribbon PF08273.7 gi|298674526|ref|YP_003726276.1| - 2 8.5 6.4 1.5 8.9 0.6 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Rad50_zn_hook PF04423.9 gi|298674526|ref|YP_003726276.1| - 2.7 7.5 4.5 1.4 8.4 0.9 2.0 2 1 0 2 2 2 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.2 gi|298674526|ref|YP_003726276.1| - 6.3 6.6 6.1 2.8 7.8 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF359 PF04019.7 gi|298674527|ref|YP_003726277.1| - 1.9e-40 137.0 0.2 2.6e-40 136.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Gp-FAR-1 PF05823.7 gi|298674527|ref|YP_003726277.1| - 0.063 13.2 1.0 0.085 12.8 0.2 1.5 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Astro_capsid_p PF12226.3 gi|298674527|ref|YP_003726277.1| - 0.095 11.9 0.0 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Turkey astrovirus capsid protein Matrilin_ccoil PF10393.4 gi|298674527|ref|YP_003726277.1| - 0.12 11.7 0.5 0.59 9.5 0.0 2.1 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Ribosomal_S24e PF01282.14 gi|298674528|ref|YP_003726278.1| - 9.6e-27 92.6 0.1 1.1e-26 92.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF1510 PF07423.6 gi|298674528|ref|YP_003726278.1| - 0.032 13.5 0.0 0.036 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF3242 PF11586.3 gi|298674528|ref|YP_003726278.1| - 0.13 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3242) Ribosomal_S27 PF01599.14 gi|298674529|ref|YP_003726279.1| - 2.8e-22 78.2 3.3 3.1e-22 78.1 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.14 gi|298674529|ref|YP_003726279.1| - 1.5e-05 24.7 0.9 1.8e-05 24.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|298674529|ref|YP_003726279.1| - 0.0001 22.0 0.5 0.00012 21.8 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|298674529|ref|YP_003726279.1| - 0.00027 20.0 1.5 0.017 14.2 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|298674529|ref|YP_003726279.1| - 0.0007 19.0 8.9 0.01 15.3 6.2 2.1 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain GFA PF04828.9 gi|298674529|ref|YP_003726279.1| - 0.0035 17.2 1.4 0.012 15.5 0.0 1.9 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.5 gi|298674529|ref|YP_003726279.1| - 0.0043 16.4 1.7 0.1 12.0 0.0 2.4 2 1 0 2 2 2 1 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|298674529|ref|YP_003726279.1| - 0.0045 16.6 7.1 0.12 12.0 3.3 2.8 1 1 1 2 2 2 2 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|298674529|ref|YP_003726279.1| - 0.007 16.0 0.3 0.0081 15.7 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1936 PF09151.5 gi|298674529|ref|YP_003726279.1| - 0.011 15.2 0.8 0.011 15.2 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) IBR PF01485.16 gi|298674529|ref|YP_003726279.1| - 0.012 15.4 0.2 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 IBR domain DUF2082 PF09855.4 gi|298674529|ref|YP_003726279.1| - 0.047 13.5 3.8 0.13 12.0 0.3 2.4 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DNA_RNApol_7kD PF03604.8 gi|298674529|ref|YP_003726279.1| - 0.05 13.0 1.3 0.093 12.2 0.9 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit GCC2_GCC3 PF07699.8 gi|298674529|ref|YP_003726279.1| - 0.059 12.9 0.9 0.067 12.7 0.6 1.2 1 0 0 1 1 1 0 GCC2 and GCC3 Zn_Tnp_IS1595 PF12760.2 gi|298674529|ref|YP_003726279.1| - 0.062 13.1 2.7 0.092 12.5 1.8 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|298674529|ref|YP_003726279.1| - 0.069 12.8 0.4 0.078 12.6 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NOB1_Zn_bind PF08772.6 gi|298674529|ref|YP_003726279.1| - 0.16 11.7 5.1 0.18 11.6 0.3 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|298674529|ref|YP_003726279.1| - 0.2 11.1 0.7 0.2 11.1 0.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|298674529|ref|YP_003726279.1| - 0.24 11.1 5.7 1.3 8.8 3.9 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Auto_anti-p27 PF06677.7 gi|298674529|ref|YP_003726279.1| - 0.28 10.9 3.4 0.6 9.9 2.3 1.5 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_3 PF14369.1 gi|298674529|ref|YP_003726279.1| - 0.71 9.9 2.8 1.1 9.3 0.3 1.9 1 1 1 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|298674529|ref|YP_003726279.1| - 0.75 9.5 4.3 1.7 8.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|298674529|ref|YP_003726279.1| - 0.77 9.1 4.8 1.5 8.2 2.6 1.9 1 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|298674529|ref|YP_003726279.1| - 2 8.3 4.5 9 6.2 0.9 2.4 2 1 0 2 2 2 0 Rubredoxin DUF4226 PF10774.4 gi|298674530|ref|YP_003726280.1| - 0.061 13.3 0.0 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Rubrerythrin PF02915.12 gi|298674531|ref|YP_003726281.1| - 2.7e-08 34.2 0.7 3e-08 34.0 0.5 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|298674531|ref|YP_003726281.1| - 0.00019 21.3 0.0 0.00022 21.2 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|298674531|ref|YP_003726281.1| - 0.00057 20.1 0.5 0.00077 19.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) DUF2202 PF09968.4 gi|298674531|ref|YP_003726281.1| - 0.014 15.0 0.2 0.017 14.8 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) COQ7 PF03232.8 gi|298674531|ref|YP_003726281.1| - 0.024 14.1 0.2 0.031 13.7 0.1 1.1 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF892 PF05974.7 gi|298674531|ref|YP_003726281.1| - 0.029 14.1 0.7 0.035 13.9 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF892) Mn_catalase PF05067.7 gi|298674531|ref|YP_003726281.1| - 0.032 12.9 0.3 0.034 12.9 0.2 1.0 1 0 0 1 1 1 0 Manganese containing catalase ADK_lid PF05191.9 gi|298674532|ref|YP_003726282.1| - 1.5e-06 27.7 1.8 0.0013 18.3 0.0 2.3 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|298674532|ref|YP_003726282.1| - 4.3e-06 25.7 2.1 0.0074 15.4 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298674532|ref|YP_003726282.1| - 1.7e-05 24.1 2.1 0.059 12.8 0.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|298674532|ref|YP_003726282.1| - 2.6e-05 23.9 2.3 0.013 15.2 0.0 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298674532|ref|YP_003726282.1| - 0.00048 19.6 0.9 0.09 12.3 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298674532|ref|YP_003726282.1| - 0.00068 19.2 1.2 0.12 12.0 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Elf1 PF05129.8 gi|298674532|ref|YP_003726282.1| - 0.002 17.7 0.2 0.0022 17.6 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.6 gi|298674532|ref|YP_003726282.1| - 0.0031 16.9 0.5 1.2 8.6 0.0 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|298674532|ref|YP_003726282.1| - 0.0044 16.7 0.5 2.3 8.0 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zf-RING_4 PF14570.1 gi|298674532|ref|YP_003726282.1| - 0.0046 16.4 3.2 0.0065 16.0 2.2 1.3 1 0 0 1 1 1 1 RING/Ubox like zinc-binding domain DUF2387 PF09526.5 gi|298674532|ref|YP_003726282.1| - 0.0048 16.7 0.4 0.63 9.9 0.0 2.1 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|298674532|ref|YP_003726282.1| - 0.0052 16.5 3.5 0.016 15.0 2.4 1.8 1 1 0 1 1 1 1 Double zinc ribbon TerY-C PF15616.1 gi|298674532|ref|YP_003726282.1| - 0.0073 16.2 1.3 0.015 15.2 0.9 1.5 1 1 0 1 1 1 1 TerY-C metal binding domain UPF0547 PF10571.4 gi|298674532|ref|YP_003726282.1| - 0.012 15.2 3.9 0.39 10.4 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_3 PF14369.1 gi|298674532|ref|YP_003726282.1| - 0.013 15.5 1.8 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger Zn_Tnp_IS91 PF14319.1 gi|298674532|ref|YP_003726282.1| - 0.013 14.9 0.9 0.79 9.2 0.0 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|298674532|ref|YP_003726282.1| - 0.013 14.7 5.6 0.093 12.0 0.1 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C2HC_2 PF13913.1 gi|298674532|ref|YP_003726282.1| - 0.014 15.0 1.6 1.6 8.5 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type COX5B PF01215.14 gi|298674532|ref|YP_003726282.1| - 0.016 14.8 1.1 0.74 9.4 0.1 2.0 1 1 1 2 2 2 0 Cytochrome c oxidase subunit Vb A2L_zn_ribbon PF08792.5 gi|298674532|ref|YP_003726282.1| - 0.017 14.5 2.4 2 7.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|298674532|ref|YP_003726282.1| - 0.024 14.3 1.1 0.087 12.4 0.7 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|298674532|ref|YP_003726282.1| - 0.025 14.8 0.6 0.033 14.4 0.4 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|298674532|ref|YP_003726282.1| - 0.044 13.7 0.5 8.3 6.4 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|298674532|ref|YP_003726282.1| - 0.046 13.5 0.4 4.2 7.3 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin zf-DNA_Pol PF08996.5 gi|298674532|ref|YP_003726282.1| - 0.056 12.7 0.2 0.06 12.6 0.1 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Prim_Zn_Ribbon PF08273.7 gi|298674532|ref|YP_003726282.1| - 0.12 12.4 5.6 0.33 11.0 3.9 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|298674532|ref|YP_003726282.1| - 0.13 12.4 7.2 0.83 9.8 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ribosomal_L32p PF01783.18 gi|298674532|ref|YP_003726282.1| - 0.13 12.4 0.8 3.5 7.8 0.1 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family TFIIS_C PF01096.13 gi|298674532|ref|YP_003726282.1| - 0.15 11.7 0.4 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Trm112p PF03966.11 gi|298674532|ref|YP_003726282.1| - 0.16 12.3 1.9 0.56 10.6 1.3 1.8 1 1 0 1 1 1 0 Trm112p-like protein Nudix_N_2 PF14803.1 gi|298674532|ref|YP_003726282.1| - 0.28 10.8 3.2 13 5.6 0.5 2.5 2 1 0 2 2 2 0 Nudix N-terminal DUF2296 PF10058.4 gi|298674532|ref|YP_003726282.1| - 0.3 10.8 4.7 0.96 9.2 3.1 1.8 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-HYPF PF07503.7 gi|298674532|ref|YP_003726282.1| - 0.33 10.3 3.3 7.5 6.0 0.3 2.4 2 1 0 2 2 2 0 HypF finger DUF2752 PF10825.3 gi|298674532|ref|YP_003726282.1| - 0.37 10.8 1.7 12 6.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-tcix PF14952.1 gi|298674532|ref|YP_003726282.1| - 0.38 10.1 2.4 12 5.2 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ISL3 PF14690.1 gi|298674532|ref|YP_003726282.1| - 0.68 10.0 7.3 2.3 8.2 1.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_KTR PF14205.1 gi|298674532|ref|YP_003726282.1| - 1.3 8.5 4.3 2.9 7.4 3.0 1.7 1 1 0 1 1 1 0 Cysteine-rich KTR NOB1_Zn_bind PF08772.6 gi|298674532|ref|YP_003726282.1| - 3.4 7.5 5.4 9.3 6.1 0.5 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.21 gi|298674532|ref|YP_003726282.1| - 6.4 7.3 6.6 9.6 6.7 0.1 2.4 2 1 0 2 2 2 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.11 gi|298674532|ref|YP_003726282.1| - 7.6 6.3 6.4 9.1 6.0 0.8 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain SDH_sah PF01972.11 gi|298674533|ref|YP_003726283.1| - 2.4e-87 292.3 1.2 2.8e-87 292.1 0.8 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|298674533|ref|YP_003726283.1| - 1.1e-05 25.2 0.5 3.3e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|298674533|ref|YP_003726283.1| - 0.0055 16.5 0.0 0.019 14.7 0.0 1.8 2 0 0 2 2 2 1 Peptidase family S49 ECH PF00378.15 gi|298674533|ref|YP_003726283.1| - 0.032 13.3 0.9 0.094 11.8 0.0 2.1 2 1 0 3 3 3 0 Enoyl-CoA hydratase/isomerase family DUF1743 PF08489.6 gi|298674534|ref|YP_003726284.1| - 1.1e-23 83.2 0.2 9.7e-23 80.1 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF1743) YorP PF09629.5 gi|298674534|ref|YP_003726284.1| - 0.0086 16.0 0.0 0.032 14.1 0.0 2.1 2 0 0 2 2 2 1 YorP protein TPP_enzyme_C PF02775.16 gi|298674535|ref|YP_003726285.1| - 7.5e-11 41.8 0.2 1.5e-10 40.8 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|298674535|ref|YP_003726285.1| - 8.8e-06 25.3 0.0 0.014 14.8 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.14 gi|298674535|ref|YP_003726285.1| - 0.0031 17.0 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|298674535|ref|YP_003726285.1| - 0.09 12.7 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain Baculo_ME53 PF06061.6 gi|298674536|ref|YP_003726286.1| - 0.0046 15.9 1.7 0.0046 15.9 1.2 1.0 1 0 0 1 1 1 1 Baculoviridae ME53 C1_3 PF07649.7 gi|298674536|ref|YP_003726286.1| - 0.0067 16.4 4.0 0.013 15.4 2.8 1.5 1 1 0 1 1 1 1 C1-like domain C1_1 PF00130.17 gi|298674536|ref|YP_003726286.1| - 0.0076 15.9 1.0 0.01 15.5 0.7 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) A2L_zn_ribbon PF08792.5 gi|298674536|ref|YP_003726286.1| - 0.028 13.8 3.5 0.29 10.6 0.4 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|298674536|ref|YP_003726286.1| - 0.035 13.9 1.0 0.062 13.1 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon C1_2 PF03107.11 gi|298674536|ref|YP_003726286.1| - 0.046 13.8 5.0 0.25 11.4 3.5 1.9 1 1 0 1 1 1 0 C1 domain zf-FPG_IleRS PF06827.9 gi|298674536|ref|YP_003726286.1| - 0.11 12.1 0.6 0.18 11.4 0.4 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-C3HC4_3 PF13920.1 gi|298674536|ref|YP_003726286.1| - 0.11 12.1 1.4 0.66 9.6 0.2 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|298674536|ref|YP_003726286.1| - 0.14 11.8 0.6 0.17 11.5 0.4 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RecR PF02132.10 gi|298674536|ref|YP_003726286.1| - 0.15 11.5 1.2 9 5.8 0.1 2.1 2 0 0 2 2 2 0 RecR protein zf-B_box PF00643.19 gi|298674536|ref|YP_003726286.1| - 1.3 8.9 5.5 8.4 6.3 3.8 2.0 1 1 0 1 1 1 0 B-box zinc finger Cys_rich_CPCC PF14206.1 gi|298674537|ref|YP_003726287.1| - 0.00027 20.4 0.5 0.0003 20.3 0.4 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC A2L_zn_ribbon PF08792.5 gi|298674537|ref|YP_003726287.1| - 0.0016 17.8 1.7 0.002 17.4 1.1 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain DZR PF12773.2 gi|298674537|ref|YP_003726287.1| - 0.0041 16.8 0.1 0.0049 16.6 0.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon RPA_interact_C PF14768.1 gi|298674537|ref|YP_003726287.1| - 0.0065 16.8 0.5 0.0068 16.7 0.3 1.1 1 0 0 1 1 1 1 Replication protein A interacting C-terminal RNA_POL_M_15KD PF02150.11 gi|298674537|ref|YP_003726287.1| - 0.0096 15.5 0.8 0.012 15.2 0.6 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc-ribbons_6 PF07191.7 gi|298674537|ref|YP_003726287.1| - 0.035 13.9 0.3 0.037 13.8 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.9 gi|298674537|ref|YP_003726287.1| - 0.036 13.7 0.5 0.68 9.6 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.11 gi|298674537|ref|YP_003726287.1| - 0.038 13.6 0.2 0.038 13.6 0.1 1.5 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain PHF5 PF03660.9 gi|298674537|ref|YP_003726287.1| - 0.054 13.5 0.3 0.059 13.4 0.2 1.1 1 0 0 1 1 1 0 PHF5-like protein Prok-RING_1 PF14446.1 gi|298674537|ref|YP_003726287.1| - 0.059 13.1 0.4 0.088 12.5 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|298674537|ref|YP_003726287.1| - 0.064 12.5 1.7 0.1 11.9 1.2 1.3 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|298674537|ref|YP_003726287.1| - 0.11 12.1 0.3 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|298674537|ref|YP_003726287.1| - 0.13 12.5 1.8 0.9 9.8 1.3 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin PF00301.15 gi|298674537|ref|YP_003726287.1| - 0.18 11.6 1.2 5.9 6.8 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-piccolo PF05715.8 gi|298674537|ref|YP_003726287.1| - 0.18 11.8 3.4 4.4 7.3 0.2 2.1 1 1 1 2 2 2 0 Piccolo Zn-finger Prim_Zn_Ribbon PF08273.7 gi|298674537|ref|YP_003726287.1| - 0.21 11.7 1.5 0.72 9.9 1.0 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase RecR PF02132.10 gi|298674537|ref|YP_003726287.1| - 0.29 10.5 4.3 1.1 8.7 0.1 2.1 1 1 1 2 2 2 0 RecR protein Baculo_ME53 PF06061.6 gi|298674537|ref|YP_003726287.1| - 0.31 9.9 1.8 0.33 9.9 1.3 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 DUF2225 PF09986.4 gi|298674537|ref|YP_003726287.1| - 0.32 10.4 3.9 0.39 10.1 0.1 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) UPF0547 PF10571.4 gi|298674537|ref|YP_003726287.1| - 0.36 10.5 5.4 0.97 9.1 3.7 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|298674537|ref|YP_003726287.1| - 0.43 9.8 2.3 1.2 8.3 1.6 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger RRN7 PF11781.3 gi|298674537|ref|YP_003726287.1| - 2.3 7.8 4.5 4.5 6.8 0.1 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Cas_CXXC_CXXC PF09706.5 gi|298674537|ref|YP_003726287.1| - 2.5 8.3 4.5 16 5.7 0.2 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) HAD_2 PF13419.1 gi|298674538|ref|YP_003726288.1| - 2.1e-26 93.2 0.0 2.5e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|298674538|ref|YP_003726288.1| - 1.2e-05 24.9 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|298674538|ref|YP_003726288.1| - 0.0014 19.0 0.0 0.0025 18.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trigger_C PF05698.9 gi|298674538|ref|YP_003726288.1| - 0.1 12.4 0.1 0.47 10.2 0.1 1.9 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) C-terminus APH PF01636.18 gi|298674539|ref|YP_003726289.1| - 8.6e-12 45.2 0.0 1.1e-11 44.8 0.0 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.17 gi|298674539|ref|YP_003726289.1| - 3.6e-06 26.4 3.2 0.0083 15.4 0.4 2.2 2 0 0 2 2 2 2 RIO1 family Choline_kinase PF01633.15 gi|298674539|ref|YP_003726289.1| - 0.00035 20.1 3.0 0.0019 17.8 2.1 2.1 1 1 0 1 1 1 1 Choline/ethanolamine kinase L_protein_N PF15518.1 gi|298674539|ref|YP_003726289.1| - 0.021 14.2 0.2 0.14 11.5 0.0 2.4 2 0 0 2 2 2 0 L protein N-terminus Hemopexin PF00045.14 gi|298674539|ref|YP_003726289.1| - 0.037 13.7 0.1 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 Hemopexin DUF4056 PF13265.1 gi|298674539|ref|YP_003726289.1| - 0.048 12.6 0.1 0.1 11.5 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4056) AAA_2 PF07724.9 gi|298674540|ref|YP_003726290.1| - 2.9e-59 199.8 4.2 2e-56 190.5 0.0 3.4 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) Clp_N PF02861.15 gi|298674540|ref|YP_003726290.1| - 4e-32 109.9 0.4 1e-14 54.1 0.0 3.4 3 0 0 3 3 3 2 Clp amino terminal domain AAA PF00004.24 gi|298674540|ref|YP_003726290.1| - 1.7e-25 89.7 0.2 2.8e-12 46.9 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ClpB_D2-small PF10431.4 gi|298674540|ref|YP_003726290.1| - 1.3e-24 85.8 1.7 5.5e-24 83.8 0.5 2.8 2 0 0 2 2 1 1 C-terminal, D2-small domain, of ClpB protein AAA_5 PF07728.9 gi|298674540|ref|YP_003726290.1| - 5.8e-18 64.9 0.8 7.9e-13 48.3 0.0 3.6 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|298674540|ref|YP_003726290.1| - 5.9e-13 49.1 2.8 0.00047 20.1 0.0 4.8 3 2 0 5 5 5 3 AAA ATPase domain AAA_22 PF13401.1 gi|298674540|ref|YP_003726290.1| - 1.5e-10 41.2 0.3 0.0029 17.7 0.0 4.3 3 1 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|298674540|ref|YP_003726290.1| - 3.3e-08 33.4 0.0 0.0021 17.9 0.0 3.0 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|298674540|ref|YP_003726290.1| - 5.2e-08 32.5 0.0 3.6e-05 23.3 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|298674540|ref|YP_003726290.1| - 1.5e-07 31.7 5.9 0.0054 17.0 0.0 4.1 4 0 0 4 4 2 2 AAA domain IstB_IS21 PF01695.12 gi|298674540|ref|YP_003726290.1| - 2.2e-07 30.4 0.0 0.0051 16.2 0.0 2.9 3 0 0 3 3 2 2 IstB-like ATP binding protein NACHT PF05729.7 gi|298674540|ref|YP_003726290.1| - 1.9e-06 27.6 0.0 0.011 15.4 0.0 3.3 3 1 0 3 3 2 2 NACHT domain AAA_17 PF13207.1 gi|298674540|ref|YP_003726290.1| - 4.1e-06 27.6 6.5 0.00088 20.0 0.0 3.9 3 2 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|298674540|ref|YP_003726290.1| - 5.3e-05 23.3 0.0 0.14 12.3 0.0 3.3 3 0 0 3 3 2 1 RNA helicase AAA_19 PF13245.1 gi|298674540|ref|YP_003726290.1| - 6.3e-05 22.6 0.0 0.64 9.8 0.0 2.8 2 0 0 2 2 2 2 Part of AAA domain DUF258 PF03193.11 gi|298674540|ref|YP_003726290.1| - 0.00019 20.6 0.0 0.48 9.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|298674540|ref|YP_003726290.1| - 0.0004 20.6 3.7 0.55 10.5 0.0 4.3 4 0 0 4 4 3 1 ABC transporter AAA_28 PF13521.1 gi|298674540|ref|YP_003726290.1| - 0.00043 20.2 2.1 0.24 11.3 0.0 4.0 4 0 0 4 4 3 1 AAA domain Torsin PF06309.6 gi|298674540|ref|YP_003726290.1| - 0.0007 19.4 0.0 0.0036 17.1 0.0 2.1 2 0 0 2 2 1 1 Torsin AAA_25 PF13481.1 gi|298674540|ref|YP_003726290.1| - 0.00076 18.9 3.3 0.94 8.8 0.0 3.9 2 2 0 4 4 4 2 AAA domain DNA_pol3_delta2 PF13177.1 gi|298674540|ref|YP_003726290.1| - 0.0018 17.9 0.0 0.023 14.3 0.0 2.8 2 1 0 2 2 2 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.16 gi|298674540|ref|YP_003726290.1| - 0.0024 17.0 0.1 0.67 9.0 0.0 3.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|298674540|ref|YP_003726290.1| - 0.0024 16.8 2.2 0.16 10.8 0.1 3.5 3 1 0 3 3 3 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|298674540|ref|YP_003726290.1| - 0.0027 17.4 18.2 0.23 11.0 0.1 5.4 3 3 1 4 4 3 2 Archaeal ATPase AAA_33 PF13671.1 gi|298674540|ref|YP_003726290.1| - 0.003 17.4 0.0 0.26 11.1 0.0 2.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|298674540|ref|YP_003726290.1| - 0.0036 16.5 0.0 0.66 9.1 0.0 2.8 2 0 0 2 2 2 1 PhoH-like protein Miro PF08477.8 gi|298674540|ref|YP_003726290.1| - 0.0047 17.4 0.2 1.3 9.5 0.0 3.9 3 0 0 3 3 3 1 Miro-like protein Bac_DnaA PF00308.13 gi|298674540|ref|YP_003726290.1| - 0.0061 16.2 2.0 2.1 7.9 0.0 4.1 4 1 0 5 5 4 1 Bacterial dnaA protein AAA_24 PF13479.1 gi|298674540|ref|YP_003726290.1| - 0.0064 16.0 0.0 0.24 10.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|298674540|ref|YP_003726290.1| - 0.0069 16.0 0.0 4.9 6.7 0.0 2.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Ras PF00071.17 gi|298674540|ref|YP_003726290.1| - 0.017 14.5 0.3 15 4.9 0.0 3.8 4 0 0 4 4 4 0 Ras family AAA_10 PF12846.2 gi|298674540|ref|YP_003726290.1| - 0.024 14.0 9.3 0.4 10.0 0.3 3.5 3 2 0 3 3 3 0 AAA-like domain AAA_29 PF13555.1 gi|298674540|ref|YP_003726290.1| - 0.025 14.1 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|298674540|ref|YP_003726290.1| - 0.051 13.9 0.0 0.051 13.9 0.0 4.5 4 2 0 4 4 2 0 AAA domain AAA_3 PF07726.6 gi|298674540|ref|YP_003726290.1| - 0.052 13.1 0.2 2.6 7.6 0.0 3.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|298674540|ref|YP_003726290.1| - 0.42 10.3 17.1 0.85 9.3 0.1 4.7 4 1 0 4 4 4 0 Domain of unknown function DUF87 IncA PF04156.9 gi|298674540|ref|YP_003726290.1| - 2.5 7.6 27.9 0.067 12.7 12.6 2.6 1 1 1 2 2 2 0 IncA protein Atg14 PF10186.4 gi|298674540|ref|YP_003726290.1| - 3.4 6.5 11.0 8.5 5.2 7.6 1.7 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF457 PF04307.9 gi|298674541|ref|YP_003726291.1| - 9.3e-16 57.5 3.2 1.3e-15 57.1 2.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|298674541|ref|YP_003726291.1| - 0.014 15.0 0.1 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C Oxidored_q3 PF00499.15 gi|298674541|ref|YP_003726291.1| - 0.037 13.7 4.8 0.065 13.0 3.3 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EcsB PF05975.7 gi|298674541|ref|YP_003726291.1| - 0.072 11.5 1.4 0.085 11.3 0.9 1.0 1 0 0 1 1 1 0 Bacterial ABC transporter protein EcsB DUF3098 PF11297.3 gi|298674541|ref|YP_003726291.1| - 0.073 12.7 2.3 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) PH_4 PF15404.1 gi|298674541|ref|YP_003726291.1| - 0.13 11.8 0.2 0.16 11.4 0.1 1.1 1 0 0 1 1 1 0 Pleckstrin homology domain DUF1464 PF07318.7 gi|298674542|ref|YP_003726292.1| - 0.00047 19.0 0.6 0.00066 18.5 0.4 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) DUF1910 PF08928.5 gi|298674542|ref|YP_003726292.1| - 0.012 15.5 0.1 0.021 14.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) DUF2103 PF09876.4 gi|298674543|ref|YP_003726293.1| - 6e-37 125.5 0.5 7e-37 125.3 0.3 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) ACT PF01842.20 gi|298674544|ref|YP_003726294.1| - 4.3e-15 54.8 0.3 9e-07 28.2 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|298674544|ref|YP_003726294.1| - 5.8e-09 36.1 1.0 5.1e-05 23.5 0.1 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|298674544|ref|YP_003726294.1| - 6.7e-05 22.3 0.1 0.25 10.8 0.0 2.8 2 2 0 2 2 2 2 ACT domain AMP-binding_C_2 PF14535.1 gi|298674545|ref|YP_003726295.1| - 1.7e-33 114.4 2.0 1.8e-32 111.2 0.8 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|298674545|ref|YP_003726295.1| - 4.4e-16 58.2 0.1 1.7e-15 56.3 0.1 2.1 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|298674545|ref|YP_003726295.1| - 7.3e-07 28.2 0.0 0.00044 19.0 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE DHH PF01368.15 gi|298674546|ref|YP_003726296.1| - 1.9e-13 50.3 0.2 7.6e-13 48.3 0.2 2.0 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|298674546|ref|YP_003726296.1| - 2.4e-09 36.7 0.2 5.3e-09 35.6 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain Prefoldin_2 PF01920.15 gi|298674547|ref|YP_003726297.1| - 8.2e-25 86.6 24.4 9.8e-25 86.3 16.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|298674547|ref|YP_003726297.1| - 4.5e-05 23.0 14.8 0.0032 17.1 2.7 2.3 1 1 1 2 2 2 2 Prefoldin subunit DUF4041 PF13250.1 gi|298674547|ref|YP_003726297.1| - 0.016 14.7 1.4 1.5 8.4 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4041) Cas_GSU0054 PF09609.5 gi|298674547|ref|YP_003726297.1| - 0.066 12.0 1.1 0.08 11.7 0.8 1.0 1 0 0 1 1 1 0 CRISPR-associated protein, GSU0054 family (Cas_GSU0054) DUF948 PF06103.6 gi|298674547|ref|YP_003726297.1| - 0.13 12.1 11.5 1.2 8.9 1.8 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) UPF0147 PF03685.8 gi|298674547|ref|YP_003726297.1| - 0.49 10.2 3.0 0.55 10.1 0.5 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0147) DUF87 PF01935.12 gi|298674547|ref|YP_003726297.1| - 0.49 10.1 7.3 0.57 9.9 5.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 V_ATPase_I PF01496.14 gi|298674547|ref|YP_003726297.1| - 0.54 8.0 15.7 0.96 7.2 10.9 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GPO PF05929.6 gi|298674547|ref|YP_003726297.1| - 0.58 9.3 20.9 0.054 12.7 4.3 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Cortex-I_coil PF09304.5 gi|298674547|ref|YP_003726297.1| - 0.62 10.1 20.3 3.1 7.8 5.5 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF342 PF03961.8 gi|298674547|ref|YP_003726297.1| - 0.65 8.3 13.0 0.9 7.8 9.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF4559 PF15112.1 gi|298674547|ref|YP_003726297.1| - 0.71 8.9 11.3 0.81 8.7 7.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) IL5 PF02025.10 gi|298674547|ref|YP_003726297.1| - 0.78 9.7 4.4 0.28 11.2 0.7 1.7 1 1 1 2 2 2 0 Interleukin 5 PhoU PF01895.14 gi|298674547|ref|YP_003726297.1| - 1.4 9.4 5.3 0.84 10.1 1.2 2.2 1 1 1 2 2 2 0 PhoU domain EDR1 PF14381.1 gi|298674547|ref|YP_003726297.1| - 1.6 8.2 5.5 0.78 9.2 1.5 1.8 1 1 1 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 NTR2 PF15458.1 gi|298674547|ref|YP_003726297.1| - 1.7 7.8 23.2 1.1 8.4 5.6 2.1 2 0 0 2 2 2 0 Nineteen complex-related protein 2 DUF4509 PF14970.1 gi|298674547|ref|YP_003726297.1| - 1.7 8.2 13.8 0.51 9.9 1.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4509) Spc24 PF08286.6 gi|298674547|ref|YP_003726297.1| - 1.9 8.1 19.6 3.4 7.3 7.1 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Laminin_II PF06009.7 gi|298674547|ref|YP_003726297.1| - 2.5 7.8 17.0 30 4.3 11.8 2.0 1 1 0 1 1 1 0 Laminin Domain II DUF3584 PF12128.3 gi|298674547|ref|YP_003726297.1| - 2.8 5.1 23.5 3.2 4.9 16.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3552 PF12072.3 gi|298674547|ref|YP_003726297.1| - 2.9 7.0 25.1 1.2 8.3 5.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) BLOC1_2 PF10046.4 gi|298674547|ref|YP_003726297.1| - 2.9 8.0 16.2 10 6.3 3.9 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.1 gi|298674547|ref|YP_003726297.1| - 3 6.9 23.3 21 4.2 16.2 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding PilO PF04350.8 gi|298674547|ref|YP_003726297.1| - 3.8 7.4 19.6 1.7 8.5 5.5 2.1 1 1 1 2 2 2 0 Pilus assembly protein, PilO Plasmid_stabil PF05016.9 gi|298674547|ref|YP_003726297.1| - 3.9 7.9 4.9 7 7.1 0.5 2.3 1 1 1 2 2 2 0 Plasmid stabilisation system protein Ax_dynein_light PF10211.4 gi|298674547|ref|YP_003726297.1| - 5 6.9 21.8 1.3 8.8 5.9 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain SseC PF04888.7 gi|298674547|ref|YP_003726297.1| - 6 6.1 23.3 1 8.5 4.1 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family DUF4337 PF14235.1 gi|298674547|ref|YP_003726297.1| - 6.2 6.6 14.3 4.8 6.9 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Spectrin PF00435.16 gi|298674547|ref|YP_003726297.1| - 6.6 7.0 20.0 3.5 7.9 5.0 2.1 1 1 1 2 2 2 0 Spectrin repeat Mnd1 PF03962.10 gi|298674547|ref|YP_003726297.1| - 6.9 6.2 21.5 5.2 6.6 4.1 2.1 1 1 1 2 2 2 0 Mnd1 family Vma12 PF11712.3 gi|298674547|ref|YP_003726297.1| - 7.4 6.2 7.5 12 5.5 5.2 1.5 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase FlxA PF14282.1 gi|298674547|ref|YP_003726297.1| - 7.5 6.5 35.0 6.8 6.7 8.5 2.3 2 0 0 2 2 2 0 FlxA-like protein TBPIP PF07106.8 gi|298674547|ref|YP_003726297.1| - 8.5 5.8 21.1 5.2 6.5 5.0 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Borrelia_P83 PF05262.6 gi|298674547|ref|YP_003726297.1| - 9.6 4.3 17.7 11 4.1 12.3 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein Pcc1 PF09341.5 gi|298674548|ref|YP_003726298.1| - 1.9e-14 53.4 0.3 2.2e-14 53.2 0.2 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.13 gi|298674549|ref|YP_003726299.1| - 3.2e-07 30.2 0.1 7.4e-07 29.0 0.0 1.6 1 1 1 2 2 2 1 Brix domain DNA_RNApol_7kD PF03604.8 gi|298674550|ref|YP_003726300.1| - 1.4e-08 34.0 8.8 2e-08 33.5 6.1 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|298674550|ref|YP_003726300.1| - 0.00011 21.3 0.4 0.048 12.8 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|298674550|ref|YP_003726300.1| - 0.00022 20.8 2.4 0.00032 20.3 1.6 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|298674550|ref|YP_003726300.1| - 0.00028 20.2 9.0 0.0078 15.6 2.2 1.8 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298674550|ref|YP_003726300.1| - 0.0016 18.0 1.1 0.51 9.9 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|298674550|ref|YP_003726300.1| - 0.002 17.7 0.3 0.002 17.7 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF951 PF06107.6 gi|298674550|ref|YP_003726300.1| - 0.0025 17.2 4.0 0.08 12.4 0.2 2.0 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF951) TF_Zn_Ribbon PF08271.7 gi|298674550|ref|YP_003726300.1| - 0.0029 16.9 1.1 0.0036 16.5 0.8 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_6 PF14599.1 gi|298674550|ref|YP_003726300.1| - 0.0039 16.9 2.3 0.0051 16.5 1.6 1.2 1 0 0 1 1 1 1 Zinc-ribbon zinc_ribbon_4 PF13717.1 gi|298674550|ref|YP_003726300.1| - 0.01 15.5 3.6 0.44 10.2 2.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|298674550|ref|YP_003726300.1| - 0.013 15.2 2.7 0.016 15.0 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-ISL3 PF14690.1 gi|298674550|ref|YP_003726300.1| - 0.013 15.4 0.8 0.013 15.4 0.6 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|298674550|ref|YP_003726300.1| - 0.014 15.2 3.6 0.23 11.2 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|298674550|ref|YP_003726300.1| - 0.024 14.2 2.5 3.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2072 PF09845.4 gi|298674550|ref|YP_003726300.1| - 0.032 14.1 0.9 0.032 14.1 0.6 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) CpXC PF14353.1 gi|298674550|ref|YP_003726300.1| - 0.033 14.1 2.1 0.99 9.3 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Prok-RING_1 PF14446.1 gi|298674550|ref|YP_003726300.1| - 0.036 13.7 2.2 1.4 8.6 0.0 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 IBR PF01485.16 gi|298674550|ref|YP_003726300.1| - 0.047 13.5 1.3 0.057 13.2 0.9 1.1 1 0 0 1 1 1 0 IBR domain DUF329 PF03884.9 gi|298674550|ref|YP_003726300.1| - 0.049 13.1 2.0 3.8 7.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-AN1 PF01428.11 gi|298674550|ref|YP_003726300.1| - 0.056 13.3 1.5 0.17 11.8 1.1 1.6 1 1 1 2 2 2 0 AN1-like Zinc finger NOB1_Zn_bind PF08772.6 gi|298674550|ref|YP_003726300.1| - 0.06 13.1 0.5 0.067 13.0 0.3 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_3 PF14369.1 gi|298674550|ref|YP_003726300.1| - 0.076 13.0 1.1 0.11 12.5 0.7 1.3 1 0 0 1 1 1 0 zinc-finger zf-C2H2_4 PF13894.1 gi|298674550|ref|YP_003726300.1| - 0.086 13.2 3.0 2.4 8.6 0.0 2.3 2 1 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.2 gi|298674550|ref|YP_003726300.1| - 0.098 12.4 0.8 0.2 11.4 0.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|298674550|ref|YP_003726300.1| - 0.11 12.3 0.6 0.13 12.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF35_N PF12172.3 gi|298674550|ref|YP_003726300.1| - 0.12 12.3 1.5 0.16 11.9 1.0 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|298674550|ref|YP_003726300.1| - 0.13 12.2 5.2 0.38 10.7 3.6 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Spt4 PF06093.8 gi|298674550|ref|YP_003726300.1| - 0.14 12.0 0.2 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-Di19 PF05605.7 gi|298674550|ref|YP_003726300.1| - 0.15 12.1 0.5 0.52 10.4 0.0 1.8 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding C1_1 PF00130.17 gi|298674550|ref|YP_003726300.1| - 0.16 11.7 2.1 0.46 10.2 1.6 1.7 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2197 PF09963.4 gi|298674550|ref|YP_003726300.1| - 0.17 11.8 2.4 2.4 8.1 0.3 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Ribosomal_S27e PF01667.12 gi|298674550|ref|YP_003726300.1| - 0.18 11.3 1.6 1.1 8.8 0.0 1.9 1 1 0 1 1 1 0 Ribosomal protein S27 zf-LITAF-like PF10601.4 gi|298674550|ref|YP_003726300.1| - 0.22 11.3 2.0 3.2 7.6 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DUF2752 PF10825.3 gi|298674550|ref|YP_003726300.1| - 0.23 11.4 0.1 0.23 11.4 0.1 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF2752) zf-FPG_IleRS PF06827.9 gi|298674550|ref|YP_003726300.1| - 0.3 10.7 6.7 0.61 9.7 0.2 2.4 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.5 gi|298674550|ref|YP_003726300.1| - 0.34 10.4 1.9 5.4 6.6 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.21 gi|298674550|ref|YP_003726300.1| - 0.42 11.0 4.3 9.2 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-FCS PF06467.9 gi|298674550|ref|YP_003726300.1| - 0.43 10.2 4.0 0.6 9.7 0.1 2.1 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DiS_P_DiS PF06750.8 gi|298674550|ref|YP_003726300.1| - 0.57 10.0 2.1 5.4 6.8 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-HIT PF04438.11 gi|298674550|ref|YP_003726300.1| - 0.84 9.3 4.9 5.5 6.7 0.7 2.1 2 0 0 2 2 2 0 HIT zinc finger Desulfoferrod_N PF06397.7 gi|298674550|ref|YP_003726300.1| - 1.1 8.6 6.2 1.4 8.4 0.9 2.1 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_KTR PF14205.1 gi|298674550|ref|YP_003726300.1| - 1.2 8.6 4.8 0.78 9.2 0.2 2.0 1 1 1 2 2 2 0 Cysteine-rich KTR Mu-like_Com PF10122.4 gi|298674550|ref|YP_003726300.1| - 1.6 7.8 6.9 25 4.0 1.2 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com PyrI_C PF02748.10 gi|298674550|ref|YP_003726300.1| - 2 7.9 4.9 0.77 9.2 0.2 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain UPF0547 PF10571.4 gi|298674550|ref|YP_003726300.1| - 2.5 7.8 10.1 6.7 6.5 6.0 2.1 2 1 0 2 2 1 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|298674550|ref|YP_003726300.1| - 3.2 7.2 7.4 21 4.6 5.1 2.0 1 1 0 1 1 1 0 HypF finger Ribosomal_L37ae PF01780.14 gi|298674551|ref|YP_003726301.1| - 5.1e-32 109.6 7.1 5.6e-32 109.4 4.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|298674551|ref|YP_003726301.1| - 0.0034 17.0 1.7 0.0057 16.2 1.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|298674551|ref|YP_003726301.1| - 0.0092 16.2 0.5 4.8 7.6 0.0 2.3 2 0 0 2 2 2 2 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|298674551|ref|YP_003726301.1| - 0.013 15.0 3.0 0.49 10.0 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|298674551|ref|YP_003726301.1| - 0.014 15.2 4.6 0.024 14.4 3.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|298674551|ref|YP_003726301.1| - 0.022 14.3 2.0 1.3 8.7 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RRN7 PF11781.3 gi|298674551|ref|YP_003726301.1| - 0.064 12.7 2.5 0.12 11.9 1.7 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|298674551|ref|YP_003726301.1| - 0.073 13.0 3.0 3.1 7.8 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF951 PF06107.6 gi|298674551|ref|YP_003726301.1| - 0.093 12.2 2.5 0.15 11.5 1.7 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF951) zf-UBP PF02148.14 gi|298674551|ref|YP_003726301.1| - 0.12 12.5 1.2 0.2 11.8 0.8 1.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Rep_fac-A_C PF08646.5 gi|298674551|ref|YP_003726301.1| - 0.13 11.9 0.4 0.17 11.5 0.3 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain zinc_ribbon_4 PF13717.1 gi|298674551|ref|YP_003726301.1| - 0.29 10.8 7.1 0.6 9.8 0.3 2.5 2 1 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.1 gi|298674551|ref|YP_003726301.1| - 1.1 9.0 5.5 4.9 7.0 3.8 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) Mut7-C PF01927.11 gi|298674551|ref|YP_003726301.1| - 1.6 8.6 4.8 11 6.0 3.4 1.9 1 1 0 1 1 1 0 Mut7-C RNAse domain A2L_zn_ribbon PF08792.5 gi|298674551|ref|YP_003726301.1| - 2.4 7.7 4.5 1 8.9 0.2 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain RNase_PH PF01138.16 gi|298674552|ref|YP_003726302.1| - 4e-30 104.8 0.0 7.6e-30 103.9 0.0 1.5 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|298674552|ref|YP_003726302.1| - 2.9e-10 39.9 0.2 5.3e-10 39.0 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|298674553|ref|YP_003726303.1| - 2.3e-33 115.3 0.2 1.1e-32 113.0 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|298674553|ref|YP_003726303.1| - 3.1e-17 62.2 0.8 6e-17 61.3 0.6 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 DUF2922 PF11148.3 gi|298674553|ref|YP_003726303.1| - 0.11 12.1 1.2 1.2 8.8 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2922) Ebola_NP PF05505.7 gi|298674553|ref|YP_003726303.1| - 0.72 7.8 13.3 1 7.3 9.2 1.1 1 0 0 1 1 1 0 Ebola nucleoprotein SBDS PF01172.13 gi|298674554|ref|YP_003726304.1| - 7.3e-28 96.1 1.3 1.3e-27 95.4 0.9 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|298674554|ref|YP_003726304.1| - 1.7e-25 89.1 0.3 2.4e-25 88.6 0.2 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain UPF0262 PF06793.7 gi|298674554|ref|YP_003726304.1| - 0.064 12.9 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0262) EFG_C PF00679.19 gi|298674554|ref|YP_003726304.1| - 0.078 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Elongation factor G C-terminus Proteasome PF00227.21 gi|298674555|ref|YP_003726305.1| - 4.7e-60 202.1 0.3 7.1e-60 201.5 0.2 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|298674555|ref|YP_003726305.1| - 3.9e-15 54.8 0.4 1.2e-14 53.2 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|298674556|ref|YP_003726306.1| - 1e-21 76.8 0.1 1.2e-21 76.6 0.1 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family P35 PF02331.10 gi|298674556|ref|YP_003726306.1| - 0.04 13.0 0.0 0.052 12.6 0.0 1.1 1 0 0 1 1 1 0 Apoptosis preventing protein RNase_P_p30 PF01876.11 gi|298674557|ref|YP_003726307.1| - 2.6e-38 130.6 0.0 3.7e-38 130.0 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|298674557|ref|YP_003726307.1| - 3.9e-06 26.7 0.0 4.7e-06 26.5 0.0 1.3 1 1 0 1 1 1 1 PHP domain RNA_binding PF01877.12 gi|298674558|ref|YP_003726308.1| - 7.5e-30 103.4 0.5 8.7e-30 103.1 0.3 1.0 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.12 gi|298674559|ref|YP_003726309.1| - 5.7e-80 267.3 14.3 6.4e-80 267.1 9.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 OppC_N PF12911.2 gi|298674560|ref|YP_003726310.1| - 0.06 12.7 0.2 0.06 12.7 0.1 5.3 6 0 0 6 6 6 0 N-terminal TM domain of oligopeptide transport permease C Phage_integrase PF00589.17 gi|298674561|ref|YP_003726311.1| - 5e-23 81.6 0.7 1.3e-22 80.2 0.3 1.8 2 0 0 2 2 2 1 Phage integrase family DZR PF12773.2 gi|298674561|ref|YP_003726311.1| - 4.6e-05 23.1 0.7 8.6e-05 22.2 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|298674561|ref|YP_003726311.1| - 6.2e-05 22.0 1.9 0.0001 21.3 1.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298674561|ref|YP_003726311.1| - 0.00017 20.9 1.7 0.00033 20.0 1.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|298674561|ref|YP_003726311.1| - 0.00047 19.5 2.1 0.049 13.1 0.1 2.4 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Phage_int_SAM_4 PF13495.1 gi|298674561|ref|YP_003726311.1| - 0.001 19.3 0.1 0.0028 17.9 0.1 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain zf-RanBP PF00641.13 gi|298674561|ref|YP_003726311.1| - 0.014 14.5 1.6 0.024 13.7 1.1 1.4 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF35_N PF12172.3 gi|298674561|ref|YP_003726311.1| - 0.03 14.2 0.8 0.056 13.3 0.6 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.6 gi|298674561|ref|YP_003726311.1| - 0.031 13.9 0.9 0.38 10.4 0.7 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.6 gi|298674561|ref|YP_003726311.1| - 0.076 12.8 0.2 0.19 11.5 0.1 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|298674561|ref|YP_003726311.1| - 0.14 11.8 1.6 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.4 gi|298674561|ref|YP_003726311.1| - 5.2 6.8 5.3 15 5.3 3.7 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2678 PF10856.3 gi|298674562|ref|YP_003726312.1| - 0.033 13.9 0.5 0.033 13.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) DUF368 PF04018.8 gi|298674562|ref|YP_003726312.1| - 0.042 13.0 0.2 0.042 13.0 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF368) O-antigen_lig PF13425.1 gi|298674562|ref|YP_003726312.1| - 0.056 13.4 5.3 2.6 8.0 0.6 2.2 2 0 0 2 2 2 0 O-antigen ligase like membrane protein DUF2244 PF10003.4 gi|298674562|ref|YP_003726312.1| - 0.057 12.7 1.6 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Sgf11 PF08209.6 gi|298674562|ref|YP_003726312.1| - 0.11 11.8 0.1 0.11 11.8 0.1 1.8 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Halogen_Hydrol PF10112.4 gi|298674562|ref|YP_003726312.1| - 0.12 11.8 4.2 1.3 8.3 0.1 2.2 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Flavi_NS4B PF01349.12 gi|298674562|ref|YP_003726312.1| - 0.23 10.3 1.3 4.3 6.1 0.0 2.0 2 0 0 2 2 2 0 Flavivirus non-structural protein NS4B CarboxypepD_reg PF13620.1 gi|298674563|ref|YP_003726313.1| - 5.1e-08 32.8 5.8 4.9e-05 23.3 0.1 3.8 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|298674563|ref|YP_003726313.1| - 5.6e-06 26.3 1.8 0.046 13.7 0.1 3.7 2 2 0 2 2 2 2 Domain of unknown function (DUF4480) MG1 PF11974.3 gi|298674563|ref|YP_003726313.1| - 0.00037 20.9 0.2 0.01 16.3 0.0 2.7 3 0 0 3 3 3 1 Alpha-2-macroglobulin MG1 domain phage_tail_N PF08400.5 gi|298674563|ref|YP_003726313.1| - 0.00095 18.8 0.2 0.3 10.8 0.0 2.7 2 0 0 2 2 2 2 Prophage tail fibre N-terminal FlgD_ig PF13860.1 gi|298674563|ref|YP_003726313.1| - 0.0047 16.6 1.0 0.072 12.8 0.0 2.9 2 0 0 2 2 2 1 FlgD Ig-like domain PEGA PF08308.6 gi|298674563|ref|YP_003726313.1| - 0.011 15.4 0.4 8.8 6.2 0.0 2.9 2 0 0 2 2 2 0 PEGA domain Transthyretin PF00576.16 gi|298674563|ref|YP_003726313.1| - 0.019 14.8 0.0 4.7 7.1 0.0 2.7 2 0 0 2 2 2 0 HIUase/Transthyretin family IncA PF04156.9 gi|298674563|ref|YP_003726313.1| - 3 7.3 12.9 0.063 12.8 3.5 2.2 2 1 0 2 2 2 0 IncA protein ETRAMP PF09716.5 gi|298674566|ref|YP_003726316.1| - 0.067 13.1 2.0 0.18 11.7 1.4 2.1 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Zot PF05707.7 gi|298674567|ref|YP_003726317.1| - 4.1e-09 36.1 0.3 6.1e-07 29.1 0.2 2.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|298674567|ref|YP_003726317.1| - 0.024 14.6 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|298674567|ref|YP_003726317.1| - 0.049 12.5 0.0 0.083 11.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein GvpD PF07088.6 gi|298674567|ref|YP_003726317.1| - 0.089 11.0 0.0 0.2 9.9 0.0 1.5 1 0 0 1 1 1 0 GvpD gas vesicle protein Hydrolase_6 PF13344.1 gi|298674567|ref|YP_003726317.1| - 0.09 12.6 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Tenui_N PF05733.6 gi|298674567|ref|YP_003726317.1| - 0.097 11.9 0.2 0.18 11.1 0.1 1.4 1 0 0 1 1 1 0 Tenuivirus/Phlebovirus nucleocapsid protein AAA_33 PF13671.1 gi|298674567|ref|YP_003726317.1| - 0.16 11.8 0.1 0.39 10.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain Fe_dep_repress PF01325.14 gi|298674568|ref|YP_003726318.1| - 0.00063 19.6 0.3 0.0023 17.8 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|298674568|ref|YP_003726318.1| - 0.0021 18.0 0.5 0.0069 16.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF3116 PF11313.3 gi|298674568|ref|YP_003726318.1| - 0.01 15.4 0.3 0.022 14.3 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HxlR PF01638.12 gi|298674568|ref|YP_003726318.1| - 0.011 15.2 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|298674568|ref|YP_003726318.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|298674568|ref|YP_003726318.1| - 0.064 13.3 0.4 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|298674568|ref|YP_003726318.1| - 0.067 12.9 1.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF4600 PF15372.1 gi|298674568|ref|YP_003726318.1| - 2.2 8.5 9.4 0.73 10.0 3.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4600) DUF87 PF01935.12 gi|298674568|ref|YP_003726318.1| - 3.1 7.5 7.2 9.6 5.9 5.0 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF87 DUF2533 PF10752.4 gi|298674568|ref|YP_003726318.1| - 4.6 7.6 5.9 35 4.7 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2533) DUF1628 PF07790.6 gi|298674569|ref|YP_003726319.1| - 2.6e-19 69.7 2.3 5.4e-19 68.7 0.1 2.3 3 0 0 3 3 3 1 Protein of unknown function (DUF1628) DUF1435 PF07256.7 gi|298674570|ref|YP_003726320.1| - 0.2 11.6 6.9 0.42 10.6 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1435) DUF3353 PF11833.3 gi|298674572|ref|YP_003726322.1| - 0.22 10.9 0.6 0.24 10.8 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) PEGA PF08308.6 gi|298674573|ref|YP_003726323.1| - 5.1e-09 35.7 2.6 5.1e-09 35.7 1.8 3.3 3 0 0 3 3 3 1 PEGA domain BiPBP_C PF06832.7 gi|298674573|ref|YP_003726323.1| - 6.5e-05 22.7 0.0 0.00043 20.1 0.0 2.3 3 0 0 3 3 3 1 Penicillin-Binding Protein C-terminus Family DUF2846 PF11008.3 gi|298674573|ref|YP_003726323.1| - 0.002 17.9 3.3 0.028 14.2 0.3 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2846) DUF4480 PF13715.1 gi|298674573|ref|YP_003726323.1| - 0.059 13.4 0.3 0.059 13.4 0.2 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4480) CARDB PF07705.6 gi|298674574|ref|YP_003726324.1| - 0.19 11.8 5.9 0.76 9.8 0.2 3.9 4 1 1 5 5 5 0 CARDB DUF3153 PF11353.3 gi|298674574|ref|YP_003726324.1| - 0.52 9.7 2.5 9.9 5.5 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3153) Anoctamin PF04547.7 gi|298674574|ref|YP_003726324.1| - 7.1 5.1 6.6 9.6 4.7 4.6 1.1 1 0 0 1 1 1 0 Calcium-activated chloride channel DUF202 PF02656.10 gi|298674576|ref|YP_003726326.1| - 4.9 7.4 9.6 2.3 8.5 0.4 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF202) VCBS PF13517.1 gi|298674578|ref|YP_003726328.1| - 1.1e-69 230.6 64.8 7.5e-15 55.0 1.6 7.0 1 1 6 7 7 7 7 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|298674578|ref|YP_003726328.1| - 5.4e-35 118.2 28.2 6e-05 22.6 0.0 7.5 7 0 0 7 7 7 7 FG-GAP repeat EF-hand_5 PF13202.1 gi|298674578|ref|YP_003726328.1| - 2.6e-07 29.6 24.8 1 8.8 0.0 8.0 8 0 0 8 8 8 5 EF hand EF-hand_1 PF00036.27 gi|298674578|ref|YP_003726328.1| - 6.4e-06 25.0 23.3 0.74 9.2 0.0 8.6 10 0 0 10 10 10 3 EF hand BBS2_Mid PF14783.1 gi|298674578|ref|YP_003726328.1| - 1.5e-05 24.7 6.3 7.7 6.3 0.0 6.1 5 2 1 6 6 6 2 Ciliary BBSome complex subunit 2, middle region DUF1391 PF07151.7 gi|298674578|ref|YP_003726328.1| - 0.0087 15.5 8.9 0.45 10.0 0.0 4.3 4 0 0 4 4 4 2 Protein of unknown function (DUF1391) DUF2693 PF10902.3 gi|298674578|ref|YP_003726328.1| - 0.049 13.5 0.1 70 3.4 0.0 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2693) EF-hand_8 PF13833.1 gi|298674578|ref|YP_003726328.1| - 1.5 8.4 16.5 16 5.1 0.0 6.8 7 0 0 7 7 7 0 EF-hand domain pair DUF1628 PF07790.6 gi|298674579|ref|YP_003726329.1| - 2.3e-16 60.3 3.0 6.1e-16 58.9 0.9 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|298674580|ref|YP_003726330.1| - 0.013 16.2 1.0 0.083 13.6 0.6 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) DUF3393 PF11873.3 gi|298674580|ref|YP_003726330.1| - 0.02 14.4 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3393) H_PPase PF03030.11 gi|298674581|ref|YP_003726331.1| - 0.0043 15.3 0.1 0.0051 15.1 0.1 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase DUF3068 PF11271.3 gi|298674581|ref|YP_003726331.1| - 0.0081 15.2 0.3 1.6 7.7 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3068) Tetraspannin PF00335.15 gi|298674581|ref|YP_003726331.1| - 0.031 13.5 0.1 0.037 13.3 0.0 1.1 1 0 0 1 1 1 0 Tetraspanin family P12 PF12669.2 gi|298674581|ref|YP_003726331.1| - 1.9 8.7 4.2 2 8.6 0.2 2.1 2 0 0 2 2 2 0 Virus attachment protein p12 family Phage_integrase PF00589.17 gi|298674582|ref|YP_003726332.1| - 1.5e-07 31.2 0.0 7.1e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 Phage integrase family Ogr_Delta PF04606.7 gi|298674585|ref|YP_003726335.1| - 0.00065 19.2 3.4 0.00099 18.7 2.3 1.3 1 1 0 1 1 1 1 Ogr/Delta-like zinc finger FeS PF04060.8 gi|298674585|ref|YP_003726335.1| - 0.039 13.5 0.7 0.039 13.5 0.5 2.0 2 0 0 2 2 2 0 Putative Fe-S cluster zf-ribbon_3 PF13248.1 gi|298674585|ref|YP_003726335.1| - 0.41 9.9 6.4 6.3 6.1 0.0 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|298674585|ref|YP_003726335.1| - 1.1 9.6 5.0 3.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|298674585|ref|YP_003726335.1| - 3.4 7.5 6.2 6.5 6.6 4.4 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|298674585|ref|YP_003726335.1| - 4.3 7.0 6.7 11 5.7 4.6 1.7 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zf-H2C2_5 PF13909.1 gi|298674587|ref|YP_003726337.1| - 0.092 13.0 1.4 0.91 9.8 0.5 2.2 1 1 0 1 1 1 0 C2H2-type zinc-finger domain Rubredoxin PF00301.15 gi|298674587|ref|YP_003726337.1| - 0.12 12.2 0.2 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Rubredoxin zf-RING_3 PF14369.1 gi|298674590|ref|YP_003726340.1| - 0.27 11.2 0.2 0.27 11.2 0.2 2.0 2 0 0 2 2 2 0 zinc-finger Phe_tRNA-synt_N PF02912.13 gi|298674591|ref|YP_003726341.1| - 0.012 15.2 0.6 0.015 15.0 0.4 1.2 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain Syntaxin-18_N PF10496.4 gi|298674591|ref|YP_003726341.1| - 0.018 14.8 0.5 0.02 14.7 0.3 1.1 1 0 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus SSFA2_C PF14723.1 gi|298674591|ref|YP_003726341.1| - 0.028 14.1 0.2 0.031 14.0 0.1 1.1 1 0 0 1 1 1 0 Sperm-specific antigen 2 C-terminus ELK PF03789.8 gi|298674591|ref|YP_003726341.1| - 0.062 13.1 0.1 0.75 9.6 0.1 2.3 2 0 0 2 2 2 0 ELK domain Apolipoprotein PF01442.13 gi|298674591|ref|YP_003726341.1| - 0.092 12.2 0.1 0.099 12.1 0.1 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DDE_3 PF13358.1 gi|298674592|ref|YP_003726342.1| - 6.1e-22 77.9 0.3 8.7e-22 77.4 0.1 1.4 2 0 0 2 2 2 1 DDE superfamily endonuclease rve PF00665.21 gi|298674592|ref|YP_003726342.1| - 2.1e-08 34.2 0.0 3.3e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|298674592|ref|YP_003726342.1| - 1.1e-06 27.9 0.1 1.6e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|298674592|ref|YP_003726342.1| - 0.069 11.8 0.0 0.092 11.4 0.0 1.1 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain TetR_C_2 PF08361.6 gi|298674592|ref|YP_003726342.1| - 0.12 12.3 0.1 0.51 10.2 0.0 1.8 2 0 0 2 2 2 0 MAATS-type transcriptional repressor, C-terminal region HTH_29 PF13551.1 gi|298674593|ref|YP_003726343.1| - 1.1e-14 54.5 0.1 8.9e-14 51.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|298674593|ref|YP_003726343.1| - 4.8e-09 36.8 1.3 9.7e-09 35.9 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|298674593|ref|YP_003726343.1| - 3.9e-08 32.6 0.1 1.4e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|298674593|ref|YP_003726343.1| - 2e-07 30.8 0.0 7.2e-07 29.1 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_33 PF13592.1 gi|298674593|ref|YP_003726343.1| - 2.2e-07 30.3 1.1 7.1e-07 28.6 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn helix DUF559 PF04480.7 gi|298674593|ref|YP_003726343.1| - 0.0022 17.6 0.4 0.0066 16.0 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF559) HTH_Tnp_IS630 PF01710.11 gi|298674593|ref|YP_003726343.1| - 0.008 15.8 1.8 0.0097 15.5 0.3 1.8 1 1 1 2 2 2 1 Transposase HTH_Tnp_1_2 PF13022.1 gi|298674593|ref|YP_003726343.1| - 0.39 10.5 3.4 9.5 6.0 0.0 2.9 2 1 1 3 3 3 0 Helix-turn-helix of insertion element transposase DUF2288 PF10052.4 gi|298674594|ref|YP_003726344.1| - 0.072 12.8 0.0 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2288) UPF0118 PF01594.11 gi|298674595|ref|YP_003726345.1| - 0.15 10.9 0.0 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF20 Radical_SAM PF04055.16 gi|298674596|ref|YP_003726346.1| - 5.2e-08 33.2 0.0 6.7e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298674596|ref|YP_003726346.1| - 0.0041 17.2 0.1 0.009 16.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298674596|ref|YP_003726346.1| - 0.0052 16.8 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Gp37_Gp68 PF07505.6 gi|298674596|ref|YP_003726346.1| - 0.054 12.6 0.3 0.21 10.7 0.2 1.8 2 0 0 2 2 2 0 Phage protein Gp37/Gp68 DUF1848 PF08902.6 gi|298674596|ref|YP_003726346.1| - 0.055 13.0 3.6 0.64 9.5 3.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) N6_Mtase PF02384.11 gi|298674597|ref|YP_003726347.1| - 6.6e-08 31.9 0.0 1.1e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase GerE PF00196.14 gi|298674598|ref|YP_003726348.1| - 1.3e-07 30.8 0.2 4.5e-07 29.0 0.1 1.9 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|298674598|ref|YP_003726348.1| - 8.3e-07 28.4 0.0 1.2e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|298674598|ref|YP_003726348.1| - 4.1e-05 23.0 1.0 0.00028 20.3 0.7 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|298674598|ref|YP_003726348.1| - 0.00011 21.9 0.2 0.00015 21.5 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|298674598|ref|YP_003726348.1| - 0.00033 20.6 0.0 0.00048 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|298674598|ref|YP_003726348.1| - 0.00054 19.5 0.1 0.0009 18.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_40 PF14493.1 gi|298674598|ref|YP_003726348.1| - 0.0024 18.0 0.1 0.0046 17.1 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain Phage_terminase PF10668.4 gi|298674598|ref|YP_003726348.1| - 0.0033 17.1 0.5 0.024 14.4 0.1 2.0 1 1 1 2 2 2 1 Phage terminase small subunit Sigma70_r4_2 PF08281.7 gi|298674598|ref|YP_003726348.1| - 0.0041 16.5 0.0 0.0064 15.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 DUF964 PF06133.6 gi|298674598|ref|YP_003726348.1| - 0.023 14.7 2.3 0.03 14.3 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF964) HTH_24 PF13412.1 gi|298674598|ref|YP_003726348.1| - 0.023 14.0 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|298674598|ref|YP_003726348.1| - 0.024 14.4 0.2 0.046 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Terminase_5 PF06056.7 gi|298674598|ref|YP_003726348.1| - 0.034 13.6 0.3 0.099 12.2 0.0 1.8 2 1 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) Sigma70_ECF PF07638.6 gi|298674598|ref|YP_003726348.1| - 0.045 13.4 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor HTH_29 PF13551.1 gi|298674598|ref|YP_003726348.1| - 0.051 13.7 0.0 0.081 13.0 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix Trp_repressor PF01371.14 gi|298674598|ref|YP_003726348.1| - 0.053 13.4 0.2 0.084 12.7 0.1 1.6 1 1 0 1 1 1 0 Trp repressor protein HTH_36 PF13730.1 gi|298674598|ref|YP_003726348.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|298674598|ref|YP_003726348.1| - 0.15 11.2 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FadA PF09403.5 gi|298674598|ref|YP_003726348.1| - 0.24 11.4 1.4 0.29 11.1 1.0 1.1 1 0 0 1 1 1 0 Adhesion protein FadA VHP PF02209.14 gi|298674598|ref|YP_003726348.1| - 0.3 10.8 1.2 0.78 9.4 0.3 2.0 2 0 0 2 2 2 0 Villin headpiece domain MCM PF00493.18 gi|298674601|ref|YP_003726351.1| - 2.4e-120 401.2 0.3 3.3e-120 400.8 0.2 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|298674601|ref|YP_003726351.1| - 3e-06 27.7 0.0 1.4e-05 25.6 0.0 2.2 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|298674601|ref|YP_003726351.1| - 0.00062 18.9 0.0 0.0015 17.7 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SSB PF00436.20 gi|298674601|ref|YP_003726351.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Single-strand binding protein family Reo_P9 PF06043.6 gi|298674602|ref|YP_003726352.1| - 0.00021 20.4 0.4 0.00025 20.2 0.2 1.0 1 0 0 1 1 1 1 Reovirus P9-like family GPAT_N PF14829.1 gi|298674602|ref|YP_003726352.1| - 0.018 14.7 0.0 0.048 13.3 0.0 1.8 1 1 1 2 2 2 0 Glycerol-3-phosphate acyltransferase N-terminal SPT2 PF08243.6 gi|298674602|ref|YP_003726352.1| - 0.038 14.2 0.2 0.068 13.4 0.1 1.4 1 0 0 1 1 1 0 SPT2 chromatin protein Sigma70_r1_1 PF03979.9 gi|298674602|ref|YP_003726352.1| - 0.065 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 Zn_Tnp_IS1595 PF12760.2 gi|298674605|ref|YP_003726355.1| - 0.00033 20.3 4.2 0.00052 19.7 2.9 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|298674605|ref|YP_003726355.1| - 0.0021 17.9 2.9 0.19 11.6 0.6 2.2 2 0 0 2 2 2 2 Zinc ribbon domain DZR PF12773.2 gi|298674605|ref|YP_003726355.1| - 0.018 14.8 1.9 0.026 14.3 1.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|298674605|ref|YP_003726355.1| - 0.022 14.0 4.1 0.032 13.5 2.8 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding Cys_rich_CPCC PF14206.1 gi|298674605|ref|YP_003726355.1| - 0.066 12.7 1.4 0.073 12.6 1.0 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC DNA_ligase_ZBD PF03119.11 gi|298674605|ref|YP_003726355.1| - 0.074 12.7 1.5 0.19 11.4 1.0 1.8 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain eIF-5_eIF-2B PF01873.12 gi|298674605|ref|YP_003726355.1| - 0.5 10.0 2.0 0.65 9.6 1.4 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.6 gi|298674605|ref|YP_003726355.1| - 0.62 9.7 3.8 0.88 9.2 2.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|298674605|ref|YP_003726355.1| - 0.67 9.9 3.4 2.7 8.0 0.6 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.14 gi|298674605|ref|YP_003726355.1| - 0.77 9.3 4.7 1.8 8.1 3.3 1.7 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_recom PF13408.1 gi|298674605|ref|YP_003726355.1| - 0.83 9.9 4.8 1.1 9.5 3.4 1.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Ogr_Delta PF04606.7 gi|298674605|ref|YP_003726355.1| - 2.7 7.7 6.0 11 5.7 4.1 2.0 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger Auto_anti-p27 PF06677.7 gi|298674605|ref|YP_003726355.1| - 3.3 7.5 7.9 8.3 6.2 0.2 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) A2L_zn_ribbon PF08792.5 gi|298674605|ref|YP_003726355.1| - 5.1 6.6 7.4 2.2 7.8 1.5 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|298674605|ref|YP_003726355.1| - 6.1 6.9 8.6 0.78 9.8 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|298674607|ref|YP_003726357.1| - 0.011 15.5 10.1 0.013 15.2 7.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|298674607|ref|YP_003726357.1| - 0.049 13.9 2.6 0.064 13.5 1.8 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_CPCC PF14206.1 gi|298674607|ref|YP_003726357.1| - 0.18 11.3 3.0 0.2 11.2 2.1 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC Rad50_zn_hook PF04423.9 gi|298674607|ref|YP_003726357.1| - 1 8.8 3.6 0.84 9.1 0.5 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif HypA PF01155.14 gi|298674607|ref|YP_003726357.1| - 1.3 8.7 4.3 1.7 8.3 3.0 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|298674610|ref|YP_003726360.1| - 0.0066 15.6 0.9 0.71 9.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|298674610|ref|YP_003726360.1| - 0.031 13.9 2.8 0.13 12.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|298674610|ref|YP_003726360.1| - 0.038 13.6 0.3 0.044 13.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|298674610|ref|YP_003726360.1| - 0.042 13.4 0.9 0.62 9.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298674610|ref|YP_003726360.1| - 0.046 13.4 0.9 0.67 9.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.1 gi|298674610|ref|YP_003726360.1| - 0.058 13.2 0.4 0.082 12.7 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) DNA_RNApol_7kD PF03604.8 gi|298674610|ref|YP_003726360.1| - 0.066 12.7 0.5 0.52 9.8 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.1 gi|298674610|ref|YP_003726360.1| - 0.069 13.4 1.0 7.8 6.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|298674610|ref|YP_003726360.1| - 0.099 12.6 5.4 3.3 7.7 4.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|298674610|ref|YP_003726360.1| - 0.26 10.8 1.3 5.3 6.6 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|298674610|ref|YP_003726360.1| - 0.37 10.1 3.1 0.82 9.0 2.1 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|298674610|ref|YP_003726360.1| - 0.52 10.6 4.3 2.2 8.6 3.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Cys_rich_CPCC PF14206.1 gi|298674610|ref|YP_003726360.1| - 0.67 9.5 3.3 1.4 8.5 2.3 1.5 1 1 0 1 1 1 0 Cysteine-rich CPCC Rubredoxin PF00301.15 gi|298674610|ref|YP_003726360.1| - 2.2 8.2 7.1 18 5.2 4.8 2.1 1 1 0 1 1 1 0 Rubredoxin TPD52 PF04201.10 gi|298674614|ref|YP_003726364.1| - 0.003 17.2 0.3 0.0046 16.6 0.2 1.4 1 0 0 1 1 1 1 Tumour protein D52 family RHH_1 PF01402.16 gi|298674614|ref|YP_003726364.1| - 0.0055 16.5 0.0 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Ectatomin PF06457.6 gi|298674614|ref|YP_003726364.1| - 0.055 13.1 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 Ectatomin NusB PF01029.13 gi|298674614|ref|YP_003726364.1| - 0.061 13.3 0.1 0.072 13.0 0.1 1.3 1 0 0 1 1 1 0 NusB family PhoU PF01895.14 gi|298674614|ref|YP_003726364.1| - 0.1 13.0 0.2 0.15 12.5 0.1 1.4 1 0 0 1 1 1 0 PhoU domain WGG PF10273.4 gi|298674614|ref|YP_003726364.1| - 0.14 12.2 0.9 0.89 9.6 0.6 2.1 1 1 0 1 1 1 0 Pre-rRNA-processing protein TSR2 OKR_DC_1_C PF03711.10 gi|298674615|ref|YP_003726365.1| - 0.014 15.4 0.1 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, C-terminal domain Molybdop_Fe4S4 PF04879.11 gi|298674615|ref|YP_003726365.1| - 0.071 12.9 0.3 3.4 7.5 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain RVT_thumb PF06817.9 gi|298674615|ref|YP_003726365.1| - 0.12 11.9 0.1 0.33 10.5 0.0 1.8 2 0 0 2 2 2 0 Reverse transcriptase thumb domain Lar_restr_allev PF14354.1 gi|298674615|ref|YP_003726365.1| - 3.1 8.1 6.0 44 4.4 4.2 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar BRAP2 PF07576.7 gi|298674616|ref|YP_003726366.1| - 0.038 13.5 1.0 0.06 12.9 0.3 1.5 1 1 0 1 1 1 0 BRCA1-associated protein 2 DUF4120 PF13496.1 gi|298674616|ref|YP_003726366.1| - 0.059 13.3 0.1 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4120) Sec-ASP3 PF15432.1 gi|298674616|ref|YP_003726366.1| - 0.64 9.9 4.3 2.7 7.9 0.7 2.1 1 1 1 2 2 2 0 Accessory Sec secretory system ASP3 DUF1828 PF08861.5 gi|298674617|ref|YP_003726367.1| - 9.7e-25 86.0 0.1 2.3e-24 84.8 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF1828 DUF4208 PF13907.1 gi|298674618|ref|YP_003726368.1| - 0.015 15.4 0.1 0.038 14.2 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) NERD PF08378.6 gi|298674619|ref|YP_003726369.1| - 0.0025 18.0 0.1 0.0064 16.7 0.1 1.8 1 0 0 1 1 1 1 Nuclease-related domain Minor_capsid_1 PF10665.4 gi|298674619|ref|YP_003726369.1| - 0.017 14.9 0.2 0.04 13.7 0.2 1.6 1 0 0 1 1 1 0 Minor capsid protein RE_AlwI PF09491.5 gi|298674620|ref|YP_003726370.1| - 1.4e-05 23.8 0.2 2.4e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 AlwI restriction endonuclease AAA_assoc_C PF09821.4 gi|298674620|ref|YP_003726370.1| - 0.0016 18.6 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 C-terminal AAA-associated domain Sp100 PF03172.8 gi|298674620|ref|YP_003726370.1| - 0.22 11.4 3.1 0.32 10.9 0.1 2.8 3 0 0 3 3 3 0 Sp100 domain MethyltransfD12 PF02086.10 gi|298674621|ref|YP_003726371.1| - 7.7e-59 199.2 6.8 8.9e-59 199.0 4.7 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Laminin_N PF00055.12 gi|298674621|ref|YP_003726371.1| - 0.041 12.8 0.1 0.068 12.1 0.1 1.3 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) Methyltransf_26 PF13659.1 gi|298674621|ref|YP_003726371.1| - 0.093 12.7 0.0 0.27 11.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain DUF4482 PF14818.1 gi|298674622|ref|YP_003726372.1| - 0.029 15.0 0.0 3 8.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4482) DUF1699 PF08004.6 gi|298674625|ref|YP_003726375.1| - 6.4e-58 193.9 1.0 7.2e-58 193.7 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) SUKH_5 PF14567.1 gi|298674625|ref|YP_003726375.1| - 0.21 11.0 1.2 0.22 10.9 0.1 1.6 2 0 0 2 2 2 0 SMI1-KNR4 cell-wall MacB_PCD PF12704.2 gi|298674626|ref|YP_003726376.1| - 2e-24 86.4 0.3 2e-24 86.4 0.2 1.7 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|298674626|ref|YP_003726376.1| - 1.5e-13 50.5 13.2 1.5e-13 50.5 9.1 2.1 2 0 0 2 2 2 1 FtsX-like permease family OrfB_IS605 PF01385.14 gi|298674627|ref|YP_003726377.1| - 2.7e-44 151.2 6.1 2.7e-44 151.2 4.2 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674627|ref|YP_003726377.1| - 1.6e-23 82.1 0.3 3.1e-23 81.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298674627|ref|YP_003726377.1| - 1.2e-20 72.5 1.7 2.8e-20 71.3 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain M_domain PF12938.2 gi|298674627|ref|YP_003726377.1| - 0.58 9.9 5.3 0.18 11.5 1.5 1.7 2 0 0 2 2 2 0 M domain of GW182 Occludin_ELL PF07303.8 gi|298674627|ref|YP_003726377.1| - 1.2 9.9 8.4 0.42 11.3 2.2 2.4 2 0 0 2 2 2 0 Occludin homology domain Phage_GP20 PF06810.6 gi|298674627|ref|YP_003726377.1| - 1.3 8.4 11.3 0.089 12.2 1.0 2.8 3 0 0 3 3 3 0 Phage minor structural protein GP20 DUF904 PF06005.7 gi|298674627|ref|YP_003726377.1| - 4 7.8 9.1 1.6 9.0 1.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Cupin_2 PF07883.6 gi|298674628|ref|YP_003726378.1| - 2.6e-14 52.4 0.2 3.6e-14 51.9 0.1 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|298674628|ref|YP_003726378.1| - 6.2e-05 22.4 0.0 8.7e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|298674628|ref|YP_003726378.1| - 0.00017 21.2 0.1 0.0002 21.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|298674628|ref|YP_003726378.1| - 0.0041 16.7 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.8 gi|298674628|ref|YP_003726378.1| - 0.0091 16.0 0.0 0.012 15.6 0.0 1.1 1 0 0 1 1 1 1 Pirin C-terminal cupin domain DUF4585 PF15232.1 gi|298674628|ref|YP_003726378.1| - 0.024 14.4 0.1 0.48 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4585) Cupin_7 PF12973.2 gi|298674628|ref|YP_003726378.1| - 0.091 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Prismane PF03063.15 gi|298674629|ref|YP_003726379.1| - 2.7e-179 596.8 0.0 3.2e-179 596.6 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family HxlR PF01638.12 gi|298674630|ref|YP_003726380.1| - 4.8e-24 83.8 0.6 6.1e-24 83.4 0.4 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF2513 PF10711.4 gi|298674630|ref|YP_003726380.1| - 0.00019 21.4 0.2 0.00032 20.7 0.1 1.3 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.9 gi|298674630|ref|YP_003726380.1| - 0.0002 21.0 0.0 0.00035 20.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.7 gi|298674630|ref|YP_003726380.1| - 0.00089 17.5 0.2 0.00099 17.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF4423 PF14394.1 gi|298674630|ref|YP_003726380.1| - 0.0023 17.5 0.1 0.003 17.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_34 PF13601.1 gi|298674630|ref|YP_003726380.1| - 0.0028 17.6 0.2 0.005 16.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|298674630|ref|YP_003726380.1| - 0.0034 16.7 0.1 0.0059 15.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|298674630|ref|YP_003726380.1| - 0.0039 16.8 0.1 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|298674630|ref|YP_003726380.1| - 0.0078 15.9 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|298674630|ref|YP_003726380.1| - 0.01 15.6 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|298674630|ref|YP_003726380.1| - 0.013 15.3 0.3 0.026 14.3 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|298674630|ref|YP_003726380.1| - 0.015 14.9 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|298674630|ref|YP_003726380.1| - 0.032 14.3 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.1 gi|298674630|ref|YP_003726380.1| - 0.076 13.3 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.5 gi|298674630|ref|YP_003726380.1| - 0.087 12.5 0.8 0.79 9.4 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF4393 PF14337.1 gi|298674630|ref|YP_003726380.1| - 0.098 12.0 0.1 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) ATP_bind_3 PF01171.15 gi|298674631|ref|YP_003726381.1| - 5e-15 55.4 0.0 7.1e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|298674631|ref|YP_003726381.1| - 0.00014 20.8 0.0 0.0002 20.3 0.0 1.1 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.14 gi|298674631|ref|YP_003726381.1| - 0.00023 21.0 0.0 0.00045 20.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.11 gi|298674631|ref|YP_003726381.1| - 0.00062 18.4 0.0 0.0009 17.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|298674631|ref|YP_003726381.1| - 0.00078 19.0 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|298674631|ref|YP_003726381.1| - 0.044 13.0 0.1 0.27 10.4 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC A2L_zn_ribbon PF08792.5 gi|298674631|ref|YP_003726381.1| - 0.39 10.2 12.1 0.74 9.3 1.1 3.5 3 0 0 3 3 3 0 A2L zinc ribbon domain RecR PF02132.10 gi|298674631|ref|YP_003726381.1| - 10 5.6 14.1 0.2 11.1 3.2 2.7 3 0 0 3 3 3 0 RecR protein TctA PF01970.11 gi|298674632|ref|YP_003726382.1| - 4.7e-84 282.2 39.1 5.4e-84 282.0 27.1 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Trm56 PF01994.11 gi|298674633|ref|YP_003726383.1| - 9.6e-48 160.9 0.1 1.2e-47 160.6 0.1 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|298674633|ref|YP_003726383.1| - 0.0004 20.2 0.0 0.00056 19.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Glycos_trans_3N PF02885.12 gi|298674634|ref|YP_003726384.1| - 2.2e-16 59.1 0.1 4.9e-16 58.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|298674634|ref|YP_003726384.1| - 2.8e-14 52.3 1.0 1.1e-13 50.4 0.1 2.3 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|298674634|ref|YP_003726384.1| - 4.2e-11 42.7 2.1 3.4e-10 39.7 0.7 2.4 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Molydop_binding PF01568.16 gi|298674634|ref|YP_003726384.1| - 1e-05 25.3 0.1 3.3e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|298674634|ref|YP_003726384.1| - 0.011 15.6 0.1 0.024 14.5 0.1 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain FrhB_FdhB_C PF04432.8 gi|298674635|ref|YP_003726385.1| - 2.9e-40 137.3 0.0 2.9e-40 137.3 0.0 1.8 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.17 gi|298674635|ref|YP_003726385.1| - 1.1e-29 102.7 0.5 2.5e-29 101.6 0.2 1.7 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.8 gi|298674635|ref|YP_003726385.1| - 6.4e-18 64.4 0.0 1.2e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.2 gi|298674635|ref|YP_003726385.1| - 2.4e-12 47.0 23.4 0.0001 22.5 0.4 4.1 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674635|ref|YP_003726385.1| - 7.7e-12 44.8 26.0 6.7e-06 25.8 0.2 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298674635|ref|YP_003726385.1| - 2.1e-11 42.9 46.9 1.5e-06 27.5 2.9 5.1 6 0 0 6 6 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298674635|ref|YP_003726385.1| - 1.4e-10 41.2 28.8 1.9e-06 28.0 8.9 3.9 2 1 2 4 4 4 4 4Fe-4S dicluster domain NIR_SIR_ferr PF03460.12 gi|298674635|ref|YP_003726385.1| - 1.2e-09 37.5 0.0 3.5e-09 36.1 0.0 1.8 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_21 PF14697.1 gi|298674635|ref|YP_003726385.1| - 9.3e-09 35.0 25.0 0.0023 17.7 0.6 3.9 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674635|ref|YP_003726385.1| - 9.4e-09 35.8 25.2 0.0046 17.6 0.3 5.4 5 1 2 7 7 6 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|298674635|ref|YP_003726385.1| - 1.1e-07 31.4 37.2 0.00038 20.2 1.9 5.0 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298674635|ref|YP_003726385.1| - 1.3e-07 31.5 22.1 0.0052 16.7 8.3 4.6 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674635|ref|YP_003726385.1| - 6.9e-06 26.3 23.4 0.07 13.4 0.9 4.8 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674635|ref|YP_003726385.1| - 7e-06 25.9 40.0 0.0028 17.8 2.0 6.0 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674635|ref|YP_003726385.1| - 7.7e-06 26.2 31.7 0.022 15.2 0.6 4.6 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674635|ref|YP_003726385.1| - 1e-05 25.1 43.5 0.00025 20.7 2.0 5.5 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298674635|ref|YP_003726385.1| - 0.0018 18.7 49.1 0.0091 16.4 3.8 5.3 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674635|ref|YP_003726385.1| - 0.026 15.0 29.1 0.041 14.4 0.5 5.9 5 1 1 6 6 5 0 4Fe-4S single cluster domain DUF237 PF03072.9 gi|298674635|ref|YP_003726385.1| - 0.051 13.4 0.7 0.081 12.8 0.1 1.6 2 0 0 2 2 1 0 MG032/MG096/MG288 family 1 HCNGP PF07818.8 gi|298674635|ref|YP_003726385.1| - 0.06 13.3 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 HCNGP-like protein Fer4_13 PF13370.1 gi|298674635|ref|YP_003726385.1| - 1 9.8 28.1 0.29 11.5 0.2 5.4 5 0 0 5 5 5 0 4Fe-4S single cluster domain PDT PF00800.13 gi|298674636|ref|YP_003726386.1| - 1.9e-59 200.2 0.1 2.5e-59 199.8 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|298674636|ref|YP_003726386.1| - 8.7e-08 31.4 0.0 1.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|298674636|ref|YP_003726386.1| - 0.0048 17.2 0.0 0.0099 16.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain MFS_1 PF07690.11 gi|298674637|ref|YP_003726387.1| - 0.054 12.1 3.2 0.025 13.2 0.8 1.4 2 0 0 2 2 2 0 Major Facilitator Superfamily Phage_portal_2 PF05136.8 gi|298674637|ref|YP_003726387.1| - 0.36 9.2 2.2 2.3 6.6 0.0 2.0 2 0 0 2 2 2 0 Phage portal protein, lambda family RDD PF06271.7 gi|298674637|ref|YP_003726387.1| - 0.45 10.3 5.8 0.28 11.0 2.3 1.9 2 0 0 2 2 2 0 RDD family AAA_3 PF07726.6 gi|298674638|ref|YP_003726388.1| - 4.6e-63 210.6 0.1 7.4e-63 210.0 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|298674638|ref|YP_003726388.1| - 3e-10 39.9 0.0 1e-09 38.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|298674638|ref|YP_003726388.1| - 9.3e-07 27.9 0.0 1.9e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|298674638|ref|YP_003726388.1| - 1.2e-05 25.4 0.2 3.8e-05 23.8 0.0 2.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|298674638|ref|YP_003726388.1| - 0.0036 16.8 0.1 0.024 14.1 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|298674638|ref|YP_003726388.1| - 0.022 13.8 0.5 0.19 10.7 0.3 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|298674638|ref|YP_003726388.1| - 0.027 13.6 0.1 0.62 9.1 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF58 PF01882.13 gi|298674639|ref|YP_003726389.1| - 7.8e-21 74.0 0.0 1.4e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|298674639|ref|YP_003726389.1| - 1.2e-05 25.4 0.0 1.6e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|298674639|ref|YP_003726389.1| - 0.00046 19.4 0.1 0.00091 18.4 0.0 1.4 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein BatA PF07584.6 gi|298674640|ref|YP_003726390.1| - 8.5e-14 51.5 4.4 8.5e-14 51.5 3.1 2.1 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|298674640|ref|YP_003726390.1| - 1.4e-05 25.2 5.4 2.4e-05 24.5 1.5 2.6 1 1 0 2 2 2 1 von Willebrand factor type A domain DUF1355 PF07090.6 gi|298674640|ref|YP_003726390.1| - 0.00014 21.2 0.0 0.00027 20.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) ABC_transp_aux PF09822.4 gi|298674640|ref|YP_003726390.1| - 0.014 14.9 0.0 0.035 13.5 0.0 1.7 1 1 0 1 1 1 0 ABC-type uncharacterized transport system ThuA PF06283.6 gi|298674640|ref|YP_003726390.1| - 0.018 14.7 0.0 0.18 11.4 0.0 2.2 2 0 0 2 2 2 0 Trehalose utilisation DUF4350 PF14258.1 gi|298674640|ref|YP_003726390.1| - 0.078 13.1 0.8 5.5 7.2 0.0 3.6 4 1 1 5 5 5 0 Domain of unknown function (DUF4350) VWA_2 PF13519.1 gi|298674641|ref|YP_003726391.1| - 1.4e-19 70.8 5.2 6.6e-16 58.8 0.0 3.0 2 1 1 3 3 3 2 von Willebrand factor type A domain DUF1355 PF07090.6 gi|298674641|ref|YP_003726391.1| - 4.8e-09 35.8 0.0 1.1e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) VWA_CoxE PF05762.9 gi|298674641|ref|YP_003726391.1| - 0.00016 20.9 0.0 0.0098 15.0 0.0 3.0 3 1 0 4 4 4 1 VWA domain containing CoxE-like protein VWA_3 PF13768.1 gi|298674641|ref|YP_003726391.1| - 0.00017 21.3 0.0 0.0034 17.0 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain ThuA PF06283.6 gi|298674641|ref|YP_003726391.1| - 0.088 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Trehalose utilisation DUF1312 PF07009.6 gi|298674641|ref|YP_003726391.1| - 6 6.7 6.6 17 5.2 0.1 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1312) DJ-1_PfpI PF01965.19 gi|298674642|ref|YP_003726392.1| - 5.1e-39 133.0 0.0 6.1e-39 132.8 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|298674642|ref|YP_003726392.1| - 4.1e-15 55.4 0.0 5.1e-15 55.1 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|298674642|ref|YP_003726392.1| - 4.8e-05 22.8 0.0 5.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|298674642|ref|YP_003726392.1| - 0.019 13.8 0.0 0.027 13.3 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_3 PF07685.9 gi|298674642|ref|YP_003726392.1| - 0.039 13.5 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|298674642|ref|YP_003726392.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 Arc_PepC_II PF06847.6 gi|298674644|ref|YP_003726394.1| - 1.2e-22 80.0 0.0 3.3e-22 78.7 0.0 1.7 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|298674644|ref|YP_003726394.1| - 1e-13 51.3 10.7 1e-13 51.3 7.4 1.7 2 1 0 2 2 2 1 Type IV leader peptidase family Methyltransf_6 PF03737.10 gi|298674645|ref|YP_003726395.1| - 7.2e-37 126.6 3.1 1.9e-36 125.2 2.1 1.8 1 0 0 1 1 1 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|298674645|ref|YP_003726395.1| - 5.1e-22 78.3 3.3 1.7e-21 76.6 2.3 1.8 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|298674645|ref|YP_003726395.1| - 3.6e-08 32.6 4.6 7.2e-08 31.6 0.9 2.8 2 1 0 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|298674645|ref|YP_003726395.1| - 9.3e-08 31.6 0.9 3.7e-06 26.3 0.3 2.4 1 1 1 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|298674645|ref|YP_003726395.1| - 5.1e-07 29.1 7.9 0.00022 20.5 0.5 3.1 3 1 0 4 4 4 2 PcrB family HMGL-like PF00682.14 gi|298674645|ref|YP_003726395.1| - 8.6e-06 25.5 0.0 0.0041 16.8 0.0 2.3 1 1 1 2 2 2 2 HMGL-like TMP-TENI PF02581.12 gi|298674645|ref|YP_003726395.1| - 1.4e-05 24.3 1.3 8.6e-05 21.7 0.9 2.4 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI DeoC PF01791.4 gi|298674645|ref|YP_003726395.1| - 6.6e-05 22.3 0.7 0.00041 19.7 0.2 2.3 1 1 1 2 2 2 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|298674645|ref|YP_003726395.1| - 0.00028 20.0 0.3 0.00064 18.8 0.1 1.7 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PEP_mutase PF13714.1 gi|298674645|ref|YP_003726395.1| - 0.0023 17.1 0.1 0.089 12.0 0.0 2.3 1 1 1 2 2 2 2 Phosphoenolpyruvate phosphomutase Trp_syntA PF00290.15 gi|298674645|ref|YP_003726395.1| - 0.011 14.2 1.5 0.12 10.9 0.2 2.3 2 0 0 2 2 2 0 Tryptophan synthase alpha chain NMO PF03060.10 gi|298674645|ref|YP_003726395.1| - 0.033 13.3 2.4 0.069 12.2 1.5 1.6 1 1 0 1 1 1 0 Nitronate monooxygenase IGPS PF00218.16 gi|298674645|ref|YP_003726395.1| - 0.042 12.8 0.5 0.076 12.0 0.4 1.4 1 1 0 1 1 1 0 Indole-3-glycerol phosphate synthase DUF561 PF04481.7 gi|298674645|ref|YP_003726395.1| - 0.38 9.6 5.1 0.53 9.1 0.3 2.9 3 1 1 4 4 4 0 Protein of unknown function (DUF561) Lysine_decarbox PF03641.9 gi|298674646|ref|YP_003726396.1| - 1.7e-09 37.6 0.1 2.4e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|298674646|ref|YP_003726396.1| - 1.1e-05 24.3 2.7 0.00081 18.3 0.5 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|298674646|ref|YP_003726396.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Topoisom_bac PF01131.15 gi|298674647|ref|YP_003726397.1| - 1.8e-123 412.3 0.1 2.6e-123 411.8 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|298674647|ref|YP_003726397.1| - 3.2e-15 55.9 1.1 1.3e-14 54.0 0.7 2.1 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|298674647|ref|YP_003726397.1| - 3.5e-14 51.9 4.3 4.5e-14 51.6 0.7 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger HHH_5 PF14520.1 gi|298674647|ref|YP_003726397.1| - 1.3e-09 38.0 0.8 2e-08 34.2 0.1 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|298674647|ref|YP_003726397.1| - 0.00011 22.0 0.8 0.00023 20.9 0.1 1.8 2 0 0 2 2 2 1 Pathogenicity locus DUF4332 PF14229.1 gi|298674647|ref|YP_003726397.1| - 0.00019 21.4 0.0 0.00048 20.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|298674647|ref|YP_003726397.1| - 0.00022 20.6 0.0 0.0011 18.4 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|298674647|ref|YP_003726397.1| - 0.00032 20.5 0.0 0.00078 19.3 0.0 1.7 1 0 0 1 1 1 1 IMS family HHH motif OMS28_porin PF03532.8 gi|298674647|ref|YP_003726397.1| - 0.027 13.5 0.2 0.027 13.5 0.1 2.8 4 0 0 4 4 4 0 OMS28 porin HHH PF00633.18 gi|298674647|ref|YP_003726397.1| - 0.041 13.5 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif TfoX_C PF04994.8 gi|298674647|ref|YP_003726397.1| - 0.065 13.1 0.2 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 TfoX C-terminal domain Beta-Casp PF10996.3 gi|298674648|ref|YP_003726398.1| - 2.4e-18 66.3 0.0 5.3e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|298674648|ref|YP_003726398.1| - 6.2e-15 55.2 0.1 1e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298674648|ref|YP_003726398.1| - 8.6e-11 41.8 2.0 5.3e-10 39.2 1.3 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|298674648|ref|YP_003726398.1| - 7.1e-09 35.3 0.1 3.5e-08 33.1 0.0 2.2 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|298674648|ref|YP_003726398.1| - 2.3e-05 24.1 0.1 5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PTS_EIIC PF02378.13 gi|298674649|ref|YP_003726399.1| - 0.17 10.6 4.2 0.19 10.5 2.9 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC 2TM PF13239.1 gi|298674649|ref|YP_003726399.1| - 0.5 10.4 3.5 0.55 10.3 2.4 1.1 1 0 0 1 1 1 0 2TM domain Peptidase_S8 PF00082.17 gi|298674650|ref|YP_003726400.1| - 7.2e-25 87.6 1.0 1.8e-21 76.5 0.7 2.5 1 1 0 1 1 1 1 Subtilase family NTP_transf_3 PF12804.2 gi|298674651|ref|YP_003726401.1| - 1.6e-30 106.2 0.0 1.9e-30 106.0 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|298674651|ref|YP_003726401.1| - 0.00014 20.8 0.0 0.00027 19.9 0.0 1.4 1 0 0 1 1 1 1 Guanylyl transferase CofC like Glycos_transf_2 PF00535.21 gi|298674651|ref|YP_003726401.1| - 0.00031 20.4 0.1 0.00045 19.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|298674651|ref|YP_003726401.1| - 0.00063 19.1 0.0 0.00084 18.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|298674651|ref|YP_003726401.1| - 0.054 13.1 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase DUF2148 PF09918.4 gi|298674652|ref|YP_003726402.1| - 2.3e-34 116.9 0.8 3.9e-34 116.1 0.5 1.4 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) FeS PF04060.8 gi|298674652|ref|YP_003726402.1| - 0.00033 20.1 1.0 0.00063 19.2 0.7 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster Nitroreductase PF00881.19 gi|298674652|ref|YP_003726402.1| - 0.023 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Nitroreductase family OrfB_IS605 PF01385.14 gi|298674653|ref|YP_003726403.1| - 1.1e-49 168.9 1.8 1.1e-49 168.9 1.2 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674653|ref|YP_003726403.1| - 2.1e-11 43.2 0.1 7.9e-11 41.4 0.0 2.1 2 1 0 2 2 2 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298674653|ref|YP_003726403.1| - 0.027 14.5 0.0 0.053 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) DDE_Tnp_IS240 PF13610.1 gi|298674654|ref|YP_003726404.1| - 3.8e-11 43.1 0.0 6.8e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|298674654|ref|YP_003726404.1| - 0.00013 21.2 0.1 0.00019 20.7 0.0 1.2 1 0 0 1 1 1 1 Transposase IS66 family Transposase_mut PF00872.13 gi|298674654|ref|YP_003726404.1| - 0.00034 19.2 0.0 0.41 9.1 0.0 2.6 3 0 0 3 3 3 2 Transposase, Mutator family DDE_3 PF13358.1 gi|298674654|ref|YP_003726404.1| - 0.033 13.9 0.0 0.095 12.4 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease UvrC_HhH_N PF08459.6 gi|298674654|ref|YP_003726404.1| - 0.048 13.2 0.0 1.5 8.3 0.0 2.6 2 1 0 2 2 2 0 UvrC Helix-hairpin-helix N-terminal DUF460 PF04312.8 gi|298674655|ref|YP_003726405.1| - 9.7e-47 157.9 0.1 2.8e-46 156.4 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Nitro_FeMo-Co PF02579.12 gi|298674655|ref|YP_003726405.1| - 0.016 15.2 0.1 1.9 8.5 0.0 3.3 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor Phage_lysis PF03245.8 gi|298674655|ref|YP_003726405.1| - 0.1 12.5 0.3 0.1 12.5 0.2 2.4 2 0 0 2 2 2 0 Bacteriophage Rz lysis protein DUF641 PF04859.7 gi|298674655|ref|YP_003726405.1| - 0.12 12.1 19.5 0.088 12.5 5.0 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Reo_sigmaC PF04582.7 gi|298674655|ref|YP_003726405.1| - 0.17 11.0 2.1 2.5 7.2 1.0 2.2 1 1 1 2 2 2 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|298674655|ref|YP_003726405.1| - 0.32 10.5 17.7 0.065 12.8 9.7 1.7 2 0 0 2 2 2 0 IncA protein DUF740 PF05340.7 gi|298674655|ref|YP_003726405.1| - 0.35 9.1 16.9 0.61 8.3 11.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF740) APG6 PF04111.7 gi|298674655|ref|YP_003726405.1| - 0.59 9.1 19.8 1.6 7.7 13.7 1.7 1 0 0 1 1 1 0 Autophagy protein Apg6 ALMT PF11744.3 gi|298674655|ref|YP_003726405.1| - 0.64 8.6 3.9 0.88 8.1 2.7 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter TMF_TATA_bd PF12325.3 gi|298674655|ref|YP_003726405.1| - 0.7 9.6 20.6 11 5.7 14.9 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3573 PF12097.3 gi|298674655|ref|YP_003726405.1| - 0.87 8.1 10.1 1.9 7.0 7.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) DUF2400 PF09674.5 gi|298674655|ref|YP_003726405.1| - 1.3 8.7 10.9 13 5.4 7.5 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2400) Cob_adeno_trans PF01923.13 gi|298674655|ref|YP_003726405.1| - 2.7 7.7 5.5 7 6.4 3.8 1.7 1 0 0 1 1 1 0 Cobalamin adenosyltransferase CENP-Q PF13094.1 gi|298674655|ref|YP_003726405.1| - 3.2 7.7 20.7 3.6 7.5 12.2 2.3 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit RIO1 PF01163.17 gi|298674656|ref|YP_003726406.1| - 1.3e-44 151.7 0.3 2e-44 151.2 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|298674656|ref|YP_003726406.1| - 1.2e-24 86.1 0.0 2.3e-24 85.2 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|298674656|ref|YP_003726406.1| - 0.00055 19.7 0.1 0.021 14.5 0.0 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family Tbf5 PF06331.7 gi|298674656|ref|YP_003726406.1| - 0.0009 18.9 0.0 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 Transcription factor TFIIH complex subunit Tfb5 Pkinase PF00069.20 gi|298674656|ref|YP_003726406.1| - 0.0039 16.3 0.1 0.008 15.3 0.1 1.6 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|298674656|ref|YP_003726406.1| - 0.0039 16.2 0.0 0.49 9.4 0.0 2.2 1 1 1 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family DUF2111 PF09884.4 gi|298674657|ref|YP_003726407.1| - 1.7e-34 117.4 1.1 2.2e-34 117.1 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Pyr_redox_2 PF07992.9 gi|298674658|ref|YP_003726408.1| - 4.4e-36 124.6 0.3 5.3e-36 124.3 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|298674658|ref|YP_003726408.1| - 4.8e-17 62.6 0.4 3.9e-12 46.6 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|298674658|ref|YP_003726408.1| - 3.8e-16 59.2 2.4 1.6e-12 47.6 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|298674658|ref|YP_003726408.1| - 6.6e-11 41.7 7.5 7.6e-05 21.7 0.0 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|298674658|ref|YP_003726408.1| - 1.7e-08 33.7 2.6 0.0013 17.6 0.3 3.9 4 0 0 4 4 4 2 FAD binding domain FAD_oxidored PF12831.2 gi|298674658|ref|YP_003726408.1| - 7.7e-08 31.8 0.1 7.7e-08 31.8 0.1 2.1 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|298674658|ref|YP_003726408.1| - 1.6e-07 30.1 1.1 0.0019 16.7 0.1 2.8 3 0 0 3 3 3 2 HI0933-like protein GIDA PF01134.17 gi|298674658|ref|YP_003726408.1| - 1.8e-05 23.7 7.5 0.0014 17.5 0.4 3.6 3 1 1 4 4 4 2 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|298674658|ref|YP_003726408.1| - 2.2e-05 23.5 0.8 0.1 11.4 0.0 3.0 2 1 1 3 3 3 2 Lycopene cyclase protein Thi4 PF01946.12 gi|298674658|ref|YP_003726408.1| - 2.8e-05 23.3 3.2 0.018 14.1 0.3 2.7 3 0 0 3 3 3 2 Thi4 family NAD_binding_8 PF13450.1 gi|298674658|ref|YP_003726408.1| - 5.8e-05 23.0 0.9 9.1e-05 22.4 0.1 1.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|298674658|ref|YP_003726408.1| - 0.00072 18.7 3.4 0.011 14.7 0.2 2.4 2 1 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|298674658|ref|YP_003726408.1| - 0.00099 18.9 1.2 0.082 12.6 0.0 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding Thioredoxin_3 PF13192.1 gi|298674659|ref|YP_003726409.1| - 4.8e-11 42.3 0.0 5.5e-11 42.1 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.15 gi|298674659|ref|YP_003726409.1| - 3.2e-06 26.7 0.0 3.4e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|298674659|ref|YP_003726409.1| - 3.6e-05 23.6 0.0 4.8e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin DUF836 PF05768.9 gi|298674659|ref|YP_003726409.1| - 0.0052 17.0 0.0 0.0056 16.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|298674659|ref|YP_003726409.1| - 0.0077 15.8 0.1 0.0097 15.4 0.0 1.3 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Acetyltransf_7 PF13508.1 gi|298674660|ref|YP_003726410.1| - 1.5e-10 41.0 0.1 3.7e-10 39.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|298674660|ref|YP_003726410.1| - 2.5e-09 37.0 0.0 6.2e-09 35.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|298674660|ref|YP_003726410.1| - 1.7e-06 28.1 0.0 2.5e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|298674660|ref|YP_003726410.1| - 3.5e-05 23.9 0.0 5.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|298674660|ref|YP_003726410.1| - 0.00016 21.6 0.0 0.00044 20.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|298674660|ref|YP_003726410.1| - 0.0004 20.2 0.0 0.00066 19.5 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|298674660|ref|YP_003726410.1| - 0.00089 18.9 0.1 0.0036 17.0 0.0 2.0 2 1 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|298674660|ref|YP_003726410.1| - 0.061 13.1 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1664 PF07889.7 gi|298674661|ref|YP_003726411.1| - 0.00058 19.6 32.8 0.0024 17.6 1.8 4.7 4 1 1 5 5 4 2 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|298674661|ref|YP_003726411.1| - 0.00086 18.8 43.8 0.052 13.0 4.2 4.7 2 1 3 5 5 5 4 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|298674661|ref|YP_003726411.1| - 0.011 14.4 44.2 0.098 11.3 8.1 3.4 2 1 1 3 3 3 0 Spc7 kinetochore protein Med9 PF07544.8 gi|298674661|ref|YP_003726411.1| - 0.022 14.4 0.8 0.022 14.4 0.6 4.8 3 1 0 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 PilJ PF13675.1 gi|298674661|ref|YP_003726411.1| - 0.03 14.6 9.0 0.055 13.7 0.4 4.0 2 2 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Ndufs5 PF10200.4 gi|298674661|ref|YP_003726411.1| - 0.093 12.7 0.2 0.57 10.2 0.0 2.4 2 0 0 2 2 2 0 NADH:ubiquinone oxidoreductase, NDUFS5-15kDa Cyclase_polyket PF04673.7 gi|298674661|ref|YP_003726411.1| - 0.12 12.4 1.6 6.8 6.8 0.0 3.2 3 1 1 4 4 4 0 Polyketide synthesis cyclase Myosin_tail_1 PF01576.14 gi|298674661|ref|YP_003726411.1| - 0.17 9.5 40.9 0.12 10.0 18.2 2.7 2 1 1 3 3 3 0 Myosin tail IncA PF04156.9 gi|298674661|ref|YP_003726411.1| - 0.2 11.2 35.3 0.092 12.3 3.1 3.4 2 1 1 3 3 3 0 IncA protein AIP3 PF03915.8 gi|298674661|ref|YP_003726411.1| - 0.24 10.2 38.6 0.45 9.3 14.1 3.3 2 1 1 3 3 3 0 Actin interacting protein 3 COG2 PF06148.6 gi|298674661|ref|YP_003726411.1| - 0.27 11.1 25.6 1.5 8.7 1.2 5.6 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|298674661|ref|YP_003726411.1| - 0.29 11.2 44.9 0.38 10.8 2.9 4.7 2 1 3 5 5 5 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|298674661|ref|YP_003726411.1| - 0.41 10.9 47.0 5.9 7.2 1.0 7.3 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|298674661|ref|YP_003726411.1| - 0.56 10.2 43.0 0.48 10.4 5.8 5.1 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Reo_sigmaC PF04582.7 gi|298674661|ref|YP_003726411.1| - 0.96 8.5 31.2 0.073 12.2 4.9 3.7 2 1 2 4 4 4 0 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|298674661|ref|YP_003726411.1| - 1.8 8.4 38.3 0.024 14.5 3.7 4.3 2 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Uds1 PF15456.1 gi|298674661|ref|YP_003726411.1| - 2.2 8.2 20.3 0.54 10.2 1.5 4.0 2 1 2 4 4 4 0 Up-regulated During Septation M PF02370.11 gi|298674661|ref|YP_003726411.1| - 5.1 7.7 6.5 6.9 7.3 0.9 4.2 3 0 0 3 3 2 0 M protein repeat AKNA PF12443.3 gi|298674661|ref|YP_003726411.1| - 5.3 7.1 13.5 0.15 12.0 0.6 4.0 4 1 0 4 4 4 0 AT-hook-containing transcription factor DUF4140 PF13600.1 gi|298674661|ref|YP_003726411.1| - 6 7.3 20.5 4.8 7.6 0.3 5.9 3 3 3 6 6 6 0 N-terminal domain of unknown function (DUF4140) AAA_13 PF13166.1 gi|298674661|ref|YP_003726411.1| - 6.4 5.0 51.0 0.31 9.4 8.2 3.1 2 1 1 3 3 3 0 AAA domain SlyX PF04102.7 gi|298674661|ref|YP_003726411.1| - 7.3 7.0 23.1 1.9 8.8 0.3 5.4 2 1 3 5 5 5 0 SlyX DUF2450 PF10475.4 gi|298674662|ref|YP_003726412.1| - 0.028 13.3 0.8 0.056 12.3 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) KaiC PF06745.8 gi|298674663|ref|YP_003726413.1| - 5e-48 163.1 0.0 8.6e-48 162.4 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|298674663|ref|YP_003726413.1| - 3.4e-13 49.4 0.0 5.3e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|298674663|ref|YP_003726413.1| - 0.00012 20.5 0.1 0.00093 17.6 0.0 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|298674663|ref|YP_003726413.1| - 0.00056 19.8 0.0 0.0019 18.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|298674663|ref|YP_003726413.1| - 0.00088 19.0 0.5 0.0017 18.1 0.1 1.6 2 0 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|298674663|ref|YP_003726413.1| - 0.0023 17.3 0.0 0.0054 16.1 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|298674663|ref|YP_003726413.1| - 0.0024 17.9 0.1 0.0068 16.5 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|298674663|ref|YP_003726413.1| - 0.0027 17.1 0.1 0.0054 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|298674663|ref|YP_003726413.1| - 0.0046 16.4 0.0 0.0083 15.6 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family T2SE PF00437.15 gi|298674663|ref|YP_003726413.1| - 0.011 14.7 0.0 0.016 14.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|298674663|ref|YP_003726413.1| - 0.011 15.6 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|298674663|ref|YP_003726413.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|298674663|ref|YP_003726413.1| - 0.013 14.9 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Sigma54_activat PF00158.21 gi|298674663|ref|YP_003726413.1| - 0.018 14.4 0.0 0.043 13.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|298674663|ref|YP_003726413.1| - 0.022 15.5 0.2 0.055 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|298674663|ref|YP_003726413.1| - 0.028 14.7 0.1 0.086 13.1 0.0 1.9 2 0 0 2 2 2 0 ABC transporter DUF2075 PF09848.4 gi|298674663|ref|YP_003726413.1| - 0.029 13.3 0.3 0.045 12.7 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.9 gi|298674663|ref|YP_003726413.1| - 0.032 13.9 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|298674663|ref|YP_003726413.1| - 0.068 12.8 0.1 0.53 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CobU PF02283.11 gi|298674663|ref|YP_003726413.1| - 0.074 12.4 0.1 0.34 10.3 0.1 2.0 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PhoH PF02562.11 gi|298674663|ref|YP_003726413.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Na_trans_assoc PF06512.8 gi|298674663|ref|YP_003726413.1| - 0.3 11.0 6.1 0.43 10.4 4.2 1.2 1 0 0 1 1 1 0 Sodium ion transport-associated LSM PF01423.17 gi|298674664|ref|YP_003726414.1| - 0.0016 17.9 0.1 0.0021 17.5 0.1 1.3 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.7 gi|298674664|ref|YP_003726414.1| - 0.035 13.4 0.1 0.042 13.1 0.1 1.0 1 0 0 1 1 1 0 Gemin6 protein LSM14 PF12701.2 gi|298674664|ref|YP_003726414.1| - 0.067 12.9 0.1 0.12 12.1 0.1 1.4 1 1 0 1 1 1 0 Scd6-like Sm domain V4R PF02830.13 gi|298674665|ref|YP_003726415.1| - 6.3e-06 25.9 0.7 1.4e-05 24.7 0.5 1.6 1 0 0 1 1 1 1 V4R domain CheF-arch PF04283.7 gi|298674666|ref|YP_003726416.1| - 0.0013 18.0 0.0 0.0066 15.6 0.0 1.8 1 1 1 2 2 2 1 Chemotaxis signal transduction system protein F from archaea GRAM PF02893.15 gi|298674666|ref|YP_003726416.1| - 0.026 14.0 0.0 0.48 9.9 0.0 2.3 2 0 0 2 2 2 0 GRAM domain Acetyltransf_7 PF13508.1 gi|298674667|ref|YP_003726417.1| - 0.0018 18.3 0.0 0.004 17.2 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Hist_deacetyl PF00850.14 gi|298674668|ref|YP_003726418.1| - 8.3e-82 274.9 0.1 1.1e-81 274.5 0.1 1.1 1 0 0 1 1 1 1 Histone deacetylase domain U3_assoc_6 PF08640.6 gi|298674668|ref|YP_003726418.1| - 0.1 12.3 0.8 4.5 7.1 0.1 2.4 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 Transglut_C PF00927.17 gi|298674669|ref|YP_003726419.1| - 0.00021 21.2 0.2 0.00042 20.3 0.2 1.4 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain Lysis_col PF02402.11 gi|298674669|ref|YP_003726419.1| - 0.26 10.9 0.9 0.8 9.3 0.3 2.0 2 0 0 2 2 2 0 Lysis protein LPAM_1 PF08139.7 gi|298674669|ref|YP_003726419.1| - 0.73 10.1 2.6 6 7.2 1.2 2.6 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Arch_flagellin PF01917.11 gi|298674671|ref|YP_003726421.1| - 4.3e-42 143.9 8.5 5e-42 143.6 5.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF1219 PF06755.7 gi|298674671|ref|YP_003726421.1| - 0.026 14.0 0.1 0.081 12.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1219) DUF4592 PF15262.1 gi|298674671|ref|YP_003726421.1| - 0.45 11.0 2.6 0.51 10.8 0.6 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4592) Arch_flagellin PF01917.11 gi|298674672|ref|YP_003726422.1| - 6.4e-43 146.5 9.6 8.1e-43 146.2 6.7 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin MF_alpha_N PF05436.6 gi|298674672|ref|YP_003726422.1| - 0.14 11.8 3.6 0.14 11.8 0.3 2.2 2 0 0 2 2 2 0 Mating factor alpha precursor N-terminus Herpes_UL73 PF03554.8 gi|298674673|ref|YP_003726423.1| - 1.7 8.5 6.3 0.24 11.2 0.3 2.7 2 0 0 2 2 2 0 UL73 viral envelope glycoprotein Yip1 PF04893.12 gi|298674673|ref|YP_003726423.1| - 1.8 8.0 28.2 1.2 8.6 3.9 3.0 2 2 0 2 2 2 0 Yip1 domain RseC_MucC PF04246.7 gi|298674673|ref|YP_003726423.1| - 4.2 6.9 13.6 5.4 6.5 0.8 3.9 1 1 1 4 4 4 0 Positive regulator of sigma(E), RseC/MucC IGPS PF00218.16 gi|298674675|ref|YP_003726425.1| - 1.4e-71 240.5 1.2 1.6e-71 240.3 0.8 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|298674675|ref|YP_003726425.1| - 3.1e-05 23.3 2.6 0.00018 20.8 0.4 2.9 2 1 0 2 2 2 1 PcrB family NanE PF04131.9 gi|298674675|ref|YP_003726425.1| - 7.7e-05 21.7 1.1 0.00092 18.2 0.0 2.9 2 2 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|298674675|ref|YP_003726425.1| - 0.00024 20.4 0.1 0.00076 18.8 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|298674675|ref|YP_003726425.1| - 0.00093 18.7 0.3 0.0018 17.8 0.2 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Trp_syntA PF00290.15 gi|298674675|ref|YP_003726425.1| - 0.0031 16.0 0.8 0.012 14.1 0.2 2.3 2 1 0 2 2 2 1 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|298674675|ref|YP_003726425.1| - 0.037 12.9 0.0 0.09 11.6 0.0 1.6 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|298674675|ref|YP_003726425.1| - 0.054 12.6 0.4 0.92 8.5 0.0 2.5 2 1 1 3 3 3 0 Ribulose-phosphate 3 epimerase family ThiG PF05690.9 gi|298674675|ref|YP_003726425.1| - 0.059 12.4 0.1 0.23 10.5 0.0 1.9 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|298674675|ref|YP_003726425.1| - 0.072 11.9 0.0 0.39 9.4 0.0 2.1 2 1 1 3 3 3 0 FMN-dependent dehydrogenase PALP PF00291.20 gi|298674676|ref|YP_003726426.1| - 9.1e-39 133.4 0.5 1.3e-38 132.9 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|298674677|ref|YP_003726427.1| - 5.9e-91 303.5 0.1 7.2e-91 303.2 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|298674677|ref|YP_003726427.1| - 9.5e-05 21.7 0.1 0.00022 20.5 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|298674677|ref|YP_003726427.1| - 0.00055 19.2 0.9 0.0017 17.6 0.1 2.1 3 0 0 3 3 3 1 PcrB family IGPS PF00218.16 gi|298674677|ref|YP_003726427.1| - 0.0029 16.6 0.0 0.014 14.4 0.0 1.9 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|298674677|ref|YP_003726427.1| - 0.0037 16.2 0.1 0.0066 15.4 0.1 1.5 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Pneumo_ncap PF03246.8 gi|298674677|ref|YP_003726427.1| - 0.0064 15.0 0.7 0.022 13.2 0.2 1.8 1 1 1 2 2 2 1 Pneumovirus nucleocapsid protein PA PF02225.17 gi|298674677|ref|YP_003726427.1| - 0.041 13.5 0.1 7 6.4 0.0 2.7 2 1 1 3 3 3 0 PA domain PucR PF07905.6 gi|298674677|ref|YP_003726427.1| - 0.052 13.1 0.0 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family SRP54 PF00448.17 gi|298674678|ref|YP_003726428.1| - 2.9e-71 239.0 0.3 4.2e-71 238.4 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|298674678|ref|YP_003726428.1| - 2.5e-11 43.5 0.6 2.5e-11 43.5 0.4 2.5 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|298674678|ref|YP_003726428.1| - 4.4e-06 25.9 0.1 6.7e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|298674678|ref|YP_003726428.1| - 4.4e-05 23.2 0.4 0.00017 21.2 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|298674678|ref|YP_003726428.1| - 0.00018 21.6 0.0 0.00043 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|298674678|ref|YP_003726428.1| - 0.00022 20.3 0.3 0.00037 19.5 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|298674678|ref|YP_003726428.1| - 0.00029 20.4 0.1 0.00057 19.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|298674678|ref|YP_003726428.1| - 0.00071 19.7 0.4 0.0059 16.7 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|298674678|ref|YP_003726428.1| - 0.00075 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|298674678|ref|YP_003726428.1| - 0.0016 18.4 0.1 0.0029 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|298674678|ref|YP_003726428.1| - 0.0018 17.6 0.1 0.02 14.3 0.1 2.4 1 1 0 1 1 1 1 Thymidylate kinase cobW PF02492.14 gi|298674678|ref|YP_003726428.1| - 0.0031 16.9 1.7 0.0038 16.6 0.3 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|298674678|ref|YP_003726428.1| - 0.0034 17.6 0.0 0.0087 16.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter ResIII PF04851.10 gi|298674678|ref|YP_003726428.1| - 0.005 16.6 0.1 0.005 16.6 0.1 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_5 PF07728.9 gi|298674678|ref|YP_003726428.1| - 0.0053 16.4 0.0 0.012 15.3 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|298674678|ref|YP_003726428.1| - 0.0092 15.7 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain LpxK PF02606.9 gi|298674678|ref|YP_003726428.1| - 0.01 14.8 0.0 0.016 14.1 0.0 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase T2SE PF00437.15 gi|298674678|ref|YP_003726428.1| - 0.011 14.6 0.1 0.017 14.0 0.1 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.15 gi|298674678|ref|YP_003726428.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase KTI12 PF08433.5 gi|298674678|ref|YP_003726428.1| - 0.015 14.5 0.1 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CbiA PF01656.18 gi|298674678|ref|YP_003726428.1| - 0.016 14.5 2.5 0.054 12.9 1.0 2.3 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.4 gi|298674678|ref|YP_003726428.1| - 0.017 13.7 0.1 0.039 12.5 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Arf PF00025.16 gi|298674678|ref|YP_003726428.1| - 0.027 13.7 0.0 0.052 12.7 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family YTH PF04146.10 gi|298674678|ref|YP_003726428.1| - 0.028 13.9 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 YT521-B-like domain G-alpha PF00503.15 gi|298674678|ref|YP_003726428.1| - 0.031 12.9 0.0 0.044 12.4 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit Arch_ATPase PF01637.13 gi|298674678|ref|YP_003726428.1| - 0.042 13.5 0.0 0.098 12.3 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|298674678|ref|YP_003726428.1| - 0.053 13.4 1.1 0.087 12.7 0.1 1.9 2 0 0 2 2 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|298674678|ref|YP_003726428.1| - 0.059 13.3 0.0 0.26 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|298674678|ref|YP_003726428.1| - 0.061 13.0 0.4 0.28 10.8 0.1 2.1 2 0 0 2 2 2 0 NTPase AAA_17 PF13207.1 gi|298674678|ref|YP_003726428.1| - 0.063 14.0 0.0 0.19 12.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain PTPlike_phytase PF14566.1 gi|298674678|ref|YP_003726428.1| - 0.068 13.2 0.6 2.1 8.3 0.0 2.7 3 0 0 3 3 3 0 Inositol hexakisphosphate AAA_29 PF13555.1 gi|298674678|ref|YP_003726428.1| - 0.083 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Prefoldin PF02996.12 gi|298674679|ref|YP_003726429.1| - 2.5e-25 88.4 4.1 3.1e-25 88.1 2.9 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|298674679|ref|YP_003726429.1| - 4.7e-09 35.9 12.3 0.0001 22.0 0.6 2.4 2 0 0 2 2 2 2 Prefoldin subunit DUF869 PF05911.6 gi|298674679|ref|YP_003726429.1| - 0.00021 19.7 4.1 0.00024 19.5 2.9 1.0 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) HAUS-augmin3 PF14932.1 gi|298674679|ref|YP_003726429.1| - 0.0024 17.1 10.9 0.0046 16.1 7.6 1.5 1 1 0 1 1 1 1 HAUS augmin-like complex subunit 3 MscS_porin PF12795.2 gi|298674679|ref|YP_003726429.1| - 0.0025 17.1 10.0 0.24 10.6 3.1 2.1 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain DUF2959 PF11172.3 gi|298674679|ref|YP_003726429.1| - 0.0029 17.3 6.6 0.2 11.4 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2959) Tropomyosin_1 PF12718.2 gi|298674679|ref|YP_003726429.1| - 0.0038 17.0 12.3 0.079 12.8 0.7 2.2 2 0 0 2 2 2 2 Tropomyosin like Lectin_N PF03954.9 gi|298674679|ref|YP_003726429.1| - 0.0044 16.4 0.6 0.0058 16.0 0.5 1.2 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain TBPIP PF07106.8 gi|298674679|ref|YP_003726429.1| - 0.0047 16.4 6.5 0.28 10.7 0.7 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1987 PF09345.5 gi|298674679|ref|YP_003726429.1| - 0.0061 16.3 1.8 0.014 15.1 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1987) DUF1664 PF07889.7 gi|298674679|ref|YP_003726429.1| - 0.007 16.1 2.6 0.042 13.6 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) EzrA PF06160.7 gi|298674679|ref|YP_003726429.1| - 0.01 14.0 8.4 0.53 8.4 0.1 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Cortex-I_coil PF09304.5 gi|298674679|ref|YP_003726429.1| - 0.011 15.8 4.6 0.43 10.6 0.7 2.2 2 0 0 2 2 2 0 Cortexillin I, coiled coil Fib_alpha PF08702.5 gi|298674679|ref|YP_003726429.1| - 0.011 15.8 5.7 0.17 11.9 0.8 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family LXG PF04740.7 gi|298674679|ref|YP_003726429.1| - 0.013 15.2 8.9 0.51 10.0 1.2 2.5 2 1 1 3 3 2 0 LXG domain of WXG superfamily FlaC_arch PF05377.6 gi|298674679|ref|YP_003726429.1| - 0.014 15.2 3.4 0.38 10.6 0.0 3.2 2 2 1 3 3 3 0 Flagella accessory protein C (FlaC) COG2 PF06148.6 gi|298674679|ref|YP_003726429.1| - 0.015 15.1 3.8 1.9 8.3 0.1 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Mod_r PF07200.8 gi|298674679|ref|YP_003726429.1| - 0.017 15.0 6.9 0.21 11.4 1.3 2.2 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein RmuC PF02646.11 gi|298674679|ref|YP_003726429.1| - 0.019 13.8 5.8 0.87 8.3 0.1 2.0 2 0 0 2 2 2 0 RmuC family DUF4446 PF14584.1 gi|298674679|ref|YP_003726429.1| - 0.019 14.7 4.9 0.92 9.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF3510 PF12022.3 gi|298674679|ref|YP_003726429.1| - 0.026 14.6 3.1 0.027 14.5 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3510) Baculo_PEP_C PF04513.7 gi|298674679|ref|YP_003726429.1| - 0.027 14.2 0.7 5.5 6.8 0.1 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3135 PF11333.3 gi|298674679|ref|YP_003726429.1| - 0.029 14.5 5.3 0.26 11.4 0.1 2.6 3 0 0 3 3 2 0 Protein of unknown function (DUF3135) Syntaxin-6_N PF09177.6 gi|298674679|ref|YP_003726429.1| - 0.03 14.7 7.8 0.83 10.1 0.1 2.4 1 1 0 2 2 2 0 Syntaxin 6, N-terminal Phage_GPO PF05929.6 gi|298674679|ref|YP_003726429.1| - 0.033 13.4 4.0 0.044 13.0 2.7 1.3 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase BAR PF03114.13 gi|298674679|ref|YP_003726429.1| - 0.034 13.6 8.6 0.084 12.3 5.9 1.6 1 1 0 1 1 1 0 BAR domain PspA_IM30 PF04012.7 gi|298674679|ref|YP_003726429.1| - 0.034 13.5 7.8 0.063 12.6 2.3 2.1 2 0 0 2 2 2 0 PspA/IM30 family DUF883 PF05957.8 gi|298674679|ref|YP_003726429.1| - 0.038 14.3 0.6 0.21 12.0 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) PhoU PF01895.14 gi|298674679|ref|YP_003726429.1| - 0.045 14.2 2.1 0.26 11.7 0.5 2.2 2 0 0 2 2 2 0 PhoU domain phiKZ_IP PF12699.2 gi|298674679|ref|YP_003726429.1| - 0.047 12.6 3.3 0.34 9.7 2.1 2.0 1 1 0 1 1 1 0 phiKZ-like phage internal head proteins Dec-1 PF04624.9 gi|298674679|ref|YP_003726429.1| - 0.048 13.2 5.4 0.14 11.8 3.7 1.8 1 0 0 1 1 1 0 Dec-1 repeat DUF722 PF05263.6 gi|298674679|ref|YP_003726429.1| - 0.059 13.5 2.9 0.098 12.7 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF722) ApoO PF09769.4 gi|298674679|ref|YP_003726429.1| - 0.06 13.0 2.1 2.8 7.6 0.1 2.1 2 0 0 2 2 2 0 Apolipoprotein O DUF2130 PF09903.4 gi|298674679|ref|YP_003726429.1| - 0.069 11.8 6.0 0.098 11.3 0.6 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Tektin PF03148.9 gi|298674679|ref|YP_003726429.1| - 0.072 11.6 9.4 0.032 12.8 3.0 2.0 2 0 0 2 2 2 0 Tektin family WXG100 PF06013.7 gi|298674679|ref|YP_003726429.1| - 0.073 13.0 8.5 1.1 9.3 1.8 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Dna2 PF08696.6 gi|298674679|ref|YP_003726429.1| - 0.074 12.3 2.2 0.1 11.9 0.3 1.7 1 1 1 2 2 2 0 DNA replication factor Dna2 Hemagglutinin PF00509.13 gi|298674679|ref|YP_003726429.1| - 0.079 11.0 4.8 0.028 12.5 0.8 1.8 2 0 0 2 2 2 0 Haemagglutinin Laminin_II PF06009.7 gi|298674679|ref|YP_003726429.1| - 0.095 12.4 5.3 0.83 9.4 1.3 2.2 2 0 0 2 2 2 0 Laminin Domain II DUF342 PF03961.8 gi|298674679|ref|YP_003726429.1| - 0.1 11.0 11.3 0.25 9.6 4.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF2937 PF11157.3 gi|298674679|ref|YP_003726429.1| - 0.11 11.7 5.2 1.1 8.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Osmo_CC PF08946.5 gi|298674679|ref|YP_003726429.1| - 0.12 12.3 0.5 0.12 12.3 0.3 2.6 2 1 1 3 3 2 0 Osmosensory transporter coiled coil DUF1978 PF09321.5 gi|298674679|ref|YP_003726429.1| - 0.13 11.7 8.3 0.45 9.9 1.8 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1978) CENP-F_leu_zip PF10473.4 gi|298674679|ref|YP_003726429.1| - 0.16 11.8 9.5 2 8.2 2.7 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG17 PF04108.7 gi|298674679|ref|YP_003726429.1| - 0.16 10.7 8.3 1.1 7.9 5.7 1.8 1 1 0 1 1 1 0 Autophagy protein Apg17 ApoLp-III PF07464.6 gi|298674679|ref|YP_003726429.1| - 0.17 11.8 7.5 0.35 10.8 1.5 2.2 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Mnd1 PF03962.10 gi|298674679|ref|YP_003726429.1| - 0.18 11.4 8.4 2.6 7.6 2.1 2.2 2 0 0 2 2 2 0 Mnd1 family DASH_Dad3 PF08656.5 gi|298674679|ref|YP_003726429.1| - 0.19 11.4 5.6 1.7 8.3 0.4 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad3 Syntaxin_2 PF14523.1 gi|298674679|ref|YP_003726429.1| - 0.19 11.7 10.6 0.1 12.6 2.0 2.5 2 2 0 2 2 2 0 Syntaxin-like protein DUF2089 PF09862.4 gi|298674679|ref|YP_003726429.1| - 0.2 11.4 3.0 1.9 8.3 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) Ax_dynein_light PF10211.4 gi|298674679|ref|YP_003726429.1| - 0.23 11.3 9.5 0.22 11.3 2.9 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain YlqD PF11068.3 gi|298674679|ref|YP_003726429.1| - 0.27 11.2 10.2 6.3 6.8 4.1 2.2 2 0 0 2 2 2 0 YlqD protein AKNA PF12443.3 gi|298674679|ref|YP_003726429.1| - 0.3 11.1 5.8 0.5 10.4 0.1 2.3 2 0 0 2 2 2 0 AT-hook-containing transcription factor Lumazine_bd PF12870.2 gi|298674679|ref|YP_003726429.1| - 0.33 11.0 6.6 0.72 9.9 0.1 2.1 2 0 0 2 2 2 0 Lumazine-binding domain FliJ PF02050.11 gi|298674679|ref|YP_003726429.1| - 0.39 10.7 14.5 0.57 10.2 0.2 2.7 2 1 1 3 3 3 0 Flagellar FliJ protein Apolipoprotein PF01442.13 gi|298674679|ref|YP_003726429.1| - 0.4 10.1 10.5 2.9 7.3 7.3 2.0 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF1311 PF07007.7 gi|298674679|ref|YP_003726429.1| - 0.41 10.7 6.2 2.1 8.4 2.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1311) Lge1 PF11488.3 gi|298674679|ref|YP_003726429.1| - 0.44 10.7 5.8 0.42 10.8 0.7 2.3 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 AATF-Che1 PF13339.1 gi|298674679|ref|YP_003726429.1| - 0.45 10.6 7.3 2.3 8.3 5.0 1.9 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF948 PF06103.6 gi|298674679|ref|YP_003726429.1| - 0.45 10.4 2.6 9.4 6.1 0.2 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3391 PF11871.3 gi|298674679|ref|YP_003726429.1| - 0.46 10.6 3.7 2 8.6 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Atg14 PF10186.4 gi|298674679|ref|YP_003726429.1| - 0.47 9.3 7.3 0.53 9.1 1.9 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 L31 PF09784.4 gi|298674679|ref|YP_003726429.1| - 0.48 10.5 3.4 22 5.2 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 IFT57 PF10498.4 gi|298674679|ref|YP_003726429.1| - 0.51 9.0 14.1 1.4 7.5 0.9 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 GLE1 PF07817.8 gi|298674679|ref|YP_003726429.1| - 0.71 8.7 6.0 3.5 6.4 0.9 2.0 2 0 0 2 2 2 0 GLE1-like protein PTPlike_phytase PF14566.1 gi|298674679|ref|YP_003726429.1| - 0.77 9.7 4.2 0.43 10.6 1.5 1.6 1 1 1 2 2 1 0 Inositol hexakisphosphate DivIVA PF05103.8 gi|298674679|ref|YP_003726429.1| - 0.89 9.6 9.9 2.2 8.3 2.2 2.2 2 0 0 2 2 2 0 DivIVA protein ADIP PF11559.3 gi|298674679|ref|YP_003726429.1| - 0.92 9.3 11.4 0.72 9.7 3.2 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF724 PF05266.9 gi|298674679|ref|YP_003726429.1| - 0.95 9.0 8.8 0.32 10.5 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF2408 PF10303.4 gi|298674679|ref|YP_003726429.1| - 0.96 9.5 7.1 2 8.5 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2408) FlxA PF14282.1 gi|298674679|ref|YP_003726429.1| - 1 9.3 14.3 0.098 12.6 0.7 2.3 2 0 0 2 2 2 0 FlxA-like protein IncA PF04156.9 gi|298674679|ref|YP_003726429.1| - 1.2 8.7 8.0 0.63 9.6 0.9 2.1 2 0 0 2 2 2 0 IncA protein FTA4 PF13093.1 gi|298674679|ref|YP_003726429.1| - 1.2 8.4 9.5 4.1 6.7 6.6 1.7 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 STAT_alpha PF01017.15 gi|298674679|ref|YP_003726429.1| - 1.4 8.6 11.4 24 4.5 7.9 2.1 1 1 0 1 1 1 0 STAT protein, all-alpha domain YtxH PF12732.2 gi|298674679|ref|YP_003726429.1| - 1.4 9.3 6.9 12 6.2 2.5 2.7 2 1 0 2 2 2 0 YtxH-like protein Filament PF00038.16 gi|298674679|ref|YP_003726429.1| - 1.4 8.2 15.8 1 8.7 5.8 2.0 1 1 1 2 2 2 0 Intermediate filament protein POX PF07526.6 gi|298674679|ref|YP_003726429.1| - 1.7 8.8 9.2 2.8 8.1 1.1 2.4 2 0 0 2 2 2 0 Associated with HOX DUF3810 PF12725.2 gi|298674679|ref|YP_003726429.1| - 1.9 7.3 7.1 0.98 8.2 2.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) V_ATPase_I PF01496.14 gi|298674679|ref|YP_003726429.1| - 2.3 5.9 9.8 1.5 6.5 2.7 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family TPR_MLP1_2 PF07926.7 gi|298674679|ref|YP_003726429.1| - 2.4 7.8 16.6 3 7.5 5.8 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3552 PF12072.3 gi|298674679|ref|YP_003726429.1| - 2.7 7.1 14.0 0.55 9.4 4.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Occludin_ELL PF07303.8 gi|298674679|ref|YP_003726429.1| - 2.7 8.7 13.8 3.4 8.4 3.4 2.5 1 1 1 2 2 2 0 Occludin homology domain GrpE PF01025.14 gi|298674679|ref|YP_003726429.1| - 2.7 7.5 10.3 4.5 6.8 4.5 2.1 2 0 0 2 2 2 0 GrpE MRP-S26 PF14943.1 gi|298674679|ref|YP_003726429.1| - 3.2 7.2 12.7 0.49 9.9 0.2 2.3 2 0 0 2 2 2 0 Mitochondrial ribosome subunit S26 SseC PF04888.7 gi|298674679|ref|YP_003726429.1| - 3.4 6.9 6.8 6.9 5.8 4.7 1.5 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family DUF4200 PF13863.1 gi|298674679|ref|YP_003726429.1| - 3.4 7.6 16.9 0.85 9.5 6.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF4407 PF14362.1 gi|298674679|ref|YP_003726429.1| - 3.9 6.3 10.1 4.4 6.1 4.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) PRKCSH-like PF12999.2 gi|298674679|ref|YP_003726429.1| - 4.6 6.7 6.4 1.8 8.1 2.1 1.8 2 0 0 2 2 2 0 Glucosidase II beta subunit-like bZIP_Maf PF03131.12 gi|298674679|ref|YP_003726429.1| - 5.2 7.4 11.1 9.3 6.6 4.3 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor BLOC1_2 PF10046.4 gi|298674679|ref|YP_003726429.1| - 5.4 7.2 13.4 7.9 6.6 0.6 2.4 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Nsp1_C PF05064.8 gi|298674679|ref|YP_003726429.1| - 5.6 6.6 12.9 3.8 7.1 0.9 2.2 1 1 0 2 2 2 0 Nsp1-like C-terminal region Jnk-SapK_ap_N PF09744.4 gi|298674679|ref|YP_003726429.1| - 5.6 6.9 11.7 3.1 7.7 3.8 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF904 PF06005.7 gi|298674679|ref|YP_003726429.1| - 6.8 7.0 11.1 14 6.0 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF904) DUF1657 PF07870.6 gi|298674679|ref|YP_003726429.1| - 6.8 6.4 11.1 2.6 7.7 0.5 2.9 3 1 0 3 3 2 0 Protein of unknown function (DUF1657) UBN2 PF14223.1 gi|298674679|ref|YP_003726429.1| - 7.4 6.3 8.6 2.4 7.9 0.2 2.2 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type CorA PF01544.13 gi|298674679|ref|YP_003726429.1| - 8.6 5.2 10.2 3.9 6.4 3.0 2.0 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein Ribosomal_L18ae PF01775.12 gi|298674680|ref|YP_003726430.1| - 6.2e-10 39.0 0.3 6.8e-10 38.9 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Coatomer_E PF04733.9 gi|298674680|ref|YP_003726430.1| - 0.065 12.4 0.1 0.072 12.2 0.1 1.0 1 0 0 1 1 1 0 Coatomer epsilon subunit DUF1886 PF09171.5 gi|298674680|ref|YP_003726430.1| - 0.088 11.8 0.1 0.091 11.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) eIF-6 PF01912.13 gi|298674681|ref|YP_003726431.1| - 1.2e-66 223.5 6.1 1.5e-66 223.3 4.2 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|298674682|ref|YP_003726432.1| - 1e-24 85.9 0.9 1.2e-24 85.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e A1_Propeptide PF07966.7 gi|298674682|ref|YP_003726432.1| - 0.11 12.2 0.1 0.27 11.0 0.1 1.7 1 0 0 1 1 1 0 A1 Propeptide Ribosomal_L39 PF00832.15 gi|298674683|ref|YP_003726433.1| - 2.3e-20 71.7 11.3 2.6e-20 71.5 7.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein QueC PF06508.8 gi|298674684|ref|YP_003726434.1| - 0.023 13.9 0.0 0.043 13.0 0.0 1.6 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC dsDNA_bind PF01984.15 gi|298674685|ref|YP_003726435.1| - 5.1e-27 93.9 20.7 6e-27 93.7 14.4 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF2666 PF10869.3 gi|298674685|ref|YP_003726435.1| - 0.018 15.0 5.8 0.062 13.3 1.4 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2666) 4HB_MCP_1 PF12729.2 gi|298674685|ref|YP_003726435.1| - 0.16 11.2 4.9 0.28 10.5 3.4 1.6 1 1 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF3333 PF11812.3 gi|298674685|ref|YP_003726435.1| - 0.25 11.3 4.0 0.32 10.9 2.7 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF3333) DUF702 PF05142.7 gi|298674685|ref|YP_003726435.1| - 0.58 10.3 2.9 0.71 10.0 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF702) TMEM51 PF15345.1 gi|298674685|ref|YP_003726435.1| - 2.6 7.6 7.7 3.2 7.3 5.3 1.1 1 0 0 1 1 1 0 Transmembrane protein 51 Ribosomal_S19e PF01090.14 gi|298674686|ref|YP_003726436.1| - 1.6e-57 192.8 0.0 1.8e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|298674686|ref|YP_003726436.1| - 0.062 12.7 0.1 0.16 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family EntA_Immun PF08951.5 gi|298674686|ref|YP_003726436.1| - 0.063 13.4 0.1 2.4 8.3 0.0 2.3 2 0 0 2 2 2 0 Enterocin A Immunity Ribosomal_S25 PF03297.10 gi|298674686|ref|YP_003726436.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 S25 ribosomal protein Adenylsucc_synt PF00709.16 gi|298674688|ref|YP_003726438.1| - 6.7e-160 532.3 0.0 7.6e-160 532.1 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Fer4_14 PF13394.1 gi|298674688|ref|YP_003726438.1| - 0.0036 17.3 0.0 0.0071 16.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298674688|ref|YP_003726438.1| - 0.048 13.7 0.1 0.26 11.4 0.0 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Peptidase_M42 PF05343.9 gi|298674689|ref|YP_003726439.1| - 6.4e-111 369.7 2.7 7.5e-111 369.5 1.9 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|298674689|ref|YP_003726439.1| - 7.9e-12 45.0 0.1 1.3e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|298674689|ref|YP_003726439.1| - 2.6e-05 24.0 0.0 0.00028 20.6 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|298674689|ref|YP_003726439.1| - 0.011 14.2 0.1 0.061 11.8 0.0 2.1 2 1 1 3 3 3 0 Aminopeptidase I zinc metalloprotease (M18) HMGL-like PF00682.14 gi|298674690|ref|YP_003726440.1| - 3.3e-71 239.6 0.4 5.6e-71 238.9 0.3 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|298674690|ref|YP_003726440.1| - 2.5e-35 121.1 2.1 4.4e-35 120.3 1.5 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain IMPDH PF00478.20 gi|298674690|ref|YP_003726440.1| - 4.1e-05 22.6 0.1 5.4e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain TPP_enzyme_N PF02776.13 gi|298674691|ref|YP_003726441.1| - 2e-60 203.1 0.2 1.7e-59 200.1 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|298674691|ref|YP_003726441.1| - 1.7e-56 190.0 0.1 1e-54 184.2 0.0 2.8 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|298674691|ref|YP_003726441.1| - 2.2e-49 166.7 0.0 4.8e-49 165.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|298674691|ref|YP_003726441.1| - 0.15 11.5 5.0 0.038 13.5 1.1 1.8 2 1 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E1_dh PF00676.15 gi|298674691|ref|YP_003726441.1| - 0.27 9.9 2.0 2.6 6.6 0.1 2.8 3 0 0 3 3 3 0 Dehydrogenase E1 component ALS_ss_C PF10369.4 gi|298674692|ref|YP_003726442.1| - 1e-32 111.6 2.2 1e-32 111.6 1.5 1.8 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|298674692|ref|YP_003726442.1| - 3.3e-18 65.2 0.6 3.1e-17 62.1 0.0 2.3 2 1 0 2 2 2 1 ACT domain ACT PF01842.20 gi|298674692|ref|YP_003726442.1| - 8.2e-15 53.9 1.4 2.1e-14 52.6 0.1 2.2 2 1 2 4 4 4 1 ACT domain ACT_4 PF13291.1 gi|298674692|ref|YP_003726442.1| - 0.00018 21.7 0.4 0.00018 21.7 0.3 1.8 2 1 0 2 2 2 1 ACT domain SLS PF14611.1 gi|298674692|ref|YP_003726442.1| - 0.0061 16.0 1.0 2.2 7.6 0.1 2.1 1 1 1 2 2 2 2 Mitochondrial inner-membrane-bound regulator IlvN PF07991.7 gi|298674693|ref|YP_003726443.1| - 5.4e-77 256.7 0.9 8.3e-77 256.1 0.6 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|298674693|ref|YP_003726443.1| - 4.8e-53 178.9 0.1 6.9e-53 178.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|298674693|ref|YP_003726443.1| - 4.4e-07 29.2 0.0 8.2e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|298674693|ref|YP_003726443.1| - 4.7e-07 30.1 0.2 1.1e-06 28.9 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|298674693|ref|YP_003726443.1| - 1.6e-06 28.0 0.0 3e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|298674693|ref|YP_003726443.1| - 0.00056 19.7 0.0 0.00092 19.0 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding_2 PF13380.1 gi|298674693|ref|YP_003726443.1| - 0.0011 19.1 0.1 0.0033 17.5 0.1 1.9 1 1 1 2 2 2 1 CoA binding domain ApbA PF02558.11 gi|298674693|ref|YP_003726443.1| - 0.0094 15.3 0.2 0.017 14.5 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA CoA_binding PF02629.14 gi|298674693|ref|YP_003726443.1| - 0.017 15.6 0.1 0.038 14.4 0.1 1.6 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA PF01408.17 gi|298674693|ref|YP_003726443.1| - 0.061 13.8 0.3 0.18 12.3 0.2 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.15 gi|298674693|ref|YP_003726443.1| - 0.079 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|298674693|ref|YP_003726443.1| - 0.1 12.3 1.4 0.94 9.1 0.1 2.4 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Oxidored_nitro PF00148.14 gi|298674693|ref|YP_003726443.1| - 0.1 11.1 0.0 0.32 9.5 0.0 1.7 2 1 0 3 3 3 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_7 PF13241.1 gi|298674693|ref|YP_003726443.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Nitroreductase PF00881.19 gi|298674694|ref|YP_003726444.1| - 9.9e-37 126.2 0.0 1.3e-36 125.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Topoisom_bac PF01131.15 gi|298674695|ref|YP_003726445.1| - 3.3e-108 362.0 0.5 4.5e-108 361.6 0.4 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|298674695|ref|YP_003726445.1| - 1.8e-15 56.1 17.8 2.2e-10 39.8 1.6 3.5 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|298674695|ref|YP_003726445.1| - 1.7e-14 53.6 0.0 7e-14 51.6 0.0 2.0 2 0 0 2 2 2 1 Toprim domain Kin17_mid PF10357.4 gi|298674696|ref|YP_003726446.1| - 0.037 13.6 0.2 0.052 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of Kin17 curved DNA-binding protein ThiC PF01964.13 gi|298674697|ref|YP_003726447.1| - 7e-185 614.5 0.5 7.9e-185 614.3 0.3 1.0 1 0 0 1 1 1 1 ThiC family SelR PF01641.13 gi|298674699|ref|YP_003726449.1| - 6.2e-55 184.1 0.2 7e-55 184.0 0.1 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|298674699|ref|YP_003726449.1| - 0.023 14.7 0.4 0.12 12.3 0.3 2.0 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DZR PF12773.2 gi|298674699|ref|YP_003726449.1| - 0.039 13.7 0.9 0.21 11.4 0.6 2.1 1 1 1 2 2 2 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|298674699|ref|YP_003726449.1| - 0.057 12.9 0.4 0.72 9.4 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S27 Tnp_zf-ribbon_2 PF13842.1 gi|298674699|ref|YP_003726449.1| - 0.057 13.8 0.7 14 6.1 0.0 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Zn-ribbon_8 PF09723.5 gi|298674699|ref|YP_003726449.1| - 0.067 13.1 0.8 11 6.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|298674699|ref|YP_003726449.1| - 0.099 11.9 0.8 4.2 6.7 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.14 gi|298674699|ref|YP_003726449.1| - 0.1 12.3 2.7 6.5 6.6 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein L37e NinF PF05810.7 gi|298674699|ref|YP_003726449.1| - 0.13 12.1 0.0 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 NinF protein DUF2437 PF10370.4 gi|298674699|ref|YP_003726449.1| - 0.14 12.5 0.0 0.33 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) DUF2296 PF10058.4 gi|298674699|ref|YP_003726449.1| - 0.15 11.8 1.1 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Zn_Tnp_IS1595 PF12760.2 gi|298674699|ref|YP_003726449.1| - 0.37 10.6 5.7 1 9.2 0.6 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Glyco_hydro_67N PF03648.9 gi|298674700|ref|YP_003726450.1| - 0.066 13.2 0.0 0.069 13.1 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 67 N-terminus Antiterm PF03589.8 gi|298674700|ref|YP_003726450.1| - 0.067 13.2 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 Antitermination protein Methyltransf_31 PF13847.1 gi|298674701|ref|YP_003726451.1| - 2.6e-40 137.4 0.1 4.7e-40 136.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674701|ref|YP_003726451.1| - 7e-24 84.1 0.5 1.5e-23 83.0 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298674701|ref|YP_003726451.1| - 4e-19 68.6 0.8 2.1e-18 66.3 0.2 2.2 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|298674701|ref|YP_003726451.1| - 3.2e-17 63.1 0.1 7.1e-17 62.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674701|ref|YP_003726451.1| - 1.1e-13 51.4 0.0 2.6e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674701|ref|YP_003726451.1| - 1.9e-13 50.7 0.1 3.7e-13 49.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674701|ref|YP_003726451.1| - 1.9e-13 50.4 0.0 2.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298674701|ref|YP_003726451.1| - 9.2e-11 41.8 0.0 2.1e-10 40.6 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.14 gi|298674701|ref|YP_003726451.1| - 2.5e-10 40.2 0.0 3.9e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|298674701|ref|YP_003726451.1| - 1.6e-08 34.0 0.3 2.1e-08 33.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|298674701|ref|YP_003726451.1| - 3.6e-07 29.7 0.1 1.1e-06 28.1 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase small domain CMAS PF02353.15 gi|298674701|ref|YP_003726451.1| - 1.6e-05 24.1 0.0 2.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|298674701|ref|YP_003726451.1| - 2e-05 24.3 0.5 4.3e-05 23.2 0.4 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.13 gi|298674701|ref|YP_003726451.1| - 7.1e-05 22.4 0.1 0.00015 21.4 0.1 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.6 gi|298674701|ref|YP_003726451.1| - 0.0001 21.1 0.0 0.00023 19.9 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|298674701|ref|YP_003726451.1| - 0.0025 17.4 0.0 0.0052 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|298674701|ref|YP_003726451.1| - 0.0045 15.9 0.1 0.0061 15.4 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.12 gi|298674701|ref|YP_003726451.1| - 0.0054 15.8 0.0 0.013 14.5 0.0 1.7 1 1 0 1 1 1 1 Putative methyltransferase Fibrillarin PF01269.12 gi|298674701|ref|YP_003726451.1| - 0.009 14.9 0.0 0.024 13.5 0.0 1.8 2 0 0 2 2 2 1 Fibrillarin Methyltransf_3 PF01596.12 gi|298674701|ref|YP_003726451.1| - 0.033 13.2 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase FtsJ PF01728.14 gi|298674701|ref|YP_003726451.1| - 0.046 13.7 0.2 0.1 12.6 0.1 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Met_10 PF02475.11 gi|298674701|ref|YP_003726451.1| - 0.06 12.9 0.2 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 Met-10+ like-protein CheR PF01739.13 gi|298674701|ref|YP_003726451.1| - 0.11 11.7 0.1 0.41 9.9 0.1 1.9 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_24 PF13578.1 gi|298674701|ref|YP_003726451.1| - 0.13 13.1 0.0 0.31 11.8 0.0 1.6 2 0 0 2 2 1 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|298674701|ref|YP_003726451.1| - 0.13 11.6 0.1 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Pyr_redox_2 PF07992.9 gi|298674702|ref|YP_003726452.1| - 1.6e-30 106.5 0.4 2.4e-30 105.9 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|298674702|ref|YP_003726452.1| - 9.1e-22 77.1 0.0 1.5e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|298674702|ref|YP_003726452.1| - 2.1e-19 69.6 1.5 6e-15 55.4 0.1 3.4 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|298674702|ref|YP_003726452.1| - 8.8e-10 38.0 1.5 0.00029 19.8 0.1 3.6 3 1 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|298674702|ref|YP_003726452.1| - 3.1e-09 35.8 0.5 0.0014 17.1 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|298674702|ref|YP_003726452.1| - 3.9e-08 33.6 0.2 6.4e-05 23.1 0.0 3.1 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|298674702|ref|YP_003726452.1| - 7.3e-07 28.3 0.8 1.6e-05 23.9 0.4 2.4 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|298674702|ref|YP_003726452.1| - 4.3e-06 26.0 0.0 0.0084 15.2 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|298674702|ref|YP_003726452.1| - 0.00025 20.0 1.7 0.0016 17.4 0.4 2.4 2 1 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|298674702|ref|YP_003726452.1| - 0.00029 20.7 0.5 0.00092 19.1 0.1 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|298674702|ref|YP_003726452.1| - 0.00044 19.9 0.1 0.016 14.8 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|298674702|ref|YP_003726452.1| - 0.0012 18.0 0.0 0.014 14.5 0.0 2.3 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|298674702|ref|YP_003726452.1| - 0.0051 15.7 0.4 0.02 13.8 0.1 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|298674702|ref|YP_003726452.1| - 0.0054 16.3 0.2 0.93 9.0 0.1 2.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DUF498 PF04430.9 gi|298674702|ref|YP_003726452.1| - 0.0078 15.7 0.0 1.1 8.8 0.0 3.1 4 0 0 4 4 3 1 Protein of unknown function (DUF498/DUF598) GDI PF00996.13 gi|298674702|ref|YP_003726452.1| - 0.0088 14.3 0.0 0.014 13.7 0.0 1.3 1 0 0 1 1 1 1 GDP dissociation inhibitor NAD_Gly3P_dh_N PF01210.18 gi|298674702|ref|YP_003726452.1| - 0.014 15.1 0.1 0.36 10.5 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|298674702|ref|YP_003726452.1| - 0.02 14.8 0.0 0.073 13.0 0.0 2.0 1 0 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.12 gi|298674702|ref|YP_003726452.1| - 0.02 15.2 0.2 1.1 9.7 0.0 2.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Thi4 PF01946.12 gi|298674702|ref|YP_003726452.1| - 0.022 13.8 0.4 0.071 12.1 0.1 2.0 2 0 0 2 2 2 0 Thi4 family FAD_binding_3 PF01494.14 gi|298674702|ref|YP_003726452.1| - 0.082 11.9 0.0 0.26 10.3 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|298674702|ref|YP_003726452.1| - 0.089 11.9 0.1 0.52 9.4 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|298674702|ref|YP_003726452.1| - 0.094 12.9 0.3 0.25 11.6 0.0 2.0 2 1 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|298674702|ref|YP_003726452.1| - 0.16 10.5 1.1 0.91 8.0 0.1 2.0 2 0 0 2 2 2 0 Tryptophan halogenase PBP PF01161.15 gi|298674703|ref|YP_003726453.1| - 8.2e-43 145.7 0.0 9.4e-43 145.5 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Pribosyltran PF00156.22 gi|298674704|ref|YP_003726454.1| - 6.3e-24 84.0 0.1 1.2e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|298674704|ref|YP_003726454.1| - 0.0026 16.9 0.2 0.0034 16.6 0.2 1.4 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase DREV PF05219.7 gi|298674704|ref|YP_003726454.1| - 0.013 14.3 0.0 0.024 13.5 0.0 1.4 1 0 0 1 1 1 0 DREV methyltransferase IATP PF04568.7 gi|298674704|ref|YP_003726454.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP PRTase_2 PF15609.1 gi|298674704|ref|YP_003726454.1| - 0.016 14.5 0.0 4.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Phosphoribosyl transferase LINES_C PF14695.1 gi|298674704|ref|YP_003726454.1| - 0.081 12.1 0.2 0.15 11.2 0.1 1.4 1 0 0 1 1 1 0 Lines C-terminus Peptidase_U32 PF01136.14 gi|298674704|ref|YP_003726454.1| - 0.12 11.2 0.3 10 4.9 0.0 2.1 2 0 0 2 2 2 0 Peptidase family U32 adh_short PF00106.20 gi|298674705|ref|YP_003726455.1| - 2.7e-34 118.4 0.0 3.2e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|298674705|ref|YP_003726455.1| - 1.8e-22 80.3 0.1 1.5e-21 77.2 0.0 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|298674705|ref|YP_003726455.1| - 3.7e-13 49.5 0.0 4.8e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|298674705|ref|YP_003726455.1| - 0.0021 17.5 0.0 0.0045 16.4 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|298674705|ref|YP_003726455.1| - 0.0025 16.5 0.2 0.0033 16.1 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|298674705|ref|YP_003726455.1| - 0.013 15.5 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding Pyr_redox_dim PF02852.17 gi|298674705|ref|YP_003726455.1| - 0.025 14.6 0.1 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Polysacc_synt_2 PF02719.10 gi|298674705|ref|YP_003726455.1| - 0.027 13.3 0.1 0.029 13.2 0.1 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Methyltransf_31 PF13847.1 gi|298674706|ref|YP_003726456.1| - 4.6e-23 81.4 0.0 5.5e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298674706|ref|YP_003726456.1| - 5.8e-18 65.5 0.0 7.9e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674706|ref|YP_003726456.1| - 1e-15 57.8 0.0 1.3e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298674706|ref|YP_003726456.1| - 1.4e-15 57.1 0.0 1.7e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|298674706|ref|YP_003726456.1| - 1.9e-15 57.0 0.0 2.8e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674706|ref|YP_003726456.1| - 7.5e-12 45.4 0.0 1e-11 45.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674706|ref|YP_003726456.1| - 1.5e-11 44.5 0.0 2.2e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|298674706|ref|YP_003726456.1| - 2.6e-09 36.9 0.0 3.3e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|298674706|ref|YP_003726456.1| - 3.4e-09 36.2 0.0 4.1e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|298674706|ref|YP_003726456.1| - 4.1e-09 36.0 0.0 5.6e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|298674706|ref|YP_003726456.1| - 8.6e-09 34.9 0.0 1.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|298674706|ref|YP_003726456.1| - 1e-07 31.9 0.0 1.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|298674706|ref|YP_003726456.1| - 1.4e-06 28.4 0.0 1.7e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase TehB PF03848.9 gi|298674706|ref|YP_003726456.1| - 4.2e-06 26.0 0.0 5.5e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_16 PF10294.4 gi|298674706|ref|YP_003726456.1| - 1.5e-05 24.5 0.0 1.9e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.15 gi|298674706|ref|YP_003726456.1| - 2e-05 23.7 0.0 2.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|298674706|ref|YP_003726456.1| - 2.2e-05 23.5 0.0 2.9e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Met_10 PF02475.11 gi|298674706|ref|YP_003726456.1| - 4.6e-05 23.1 0.1 5.7e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein GCD14 PF08704.5 gi|298674706|ref|YP_003726456.1| - 0.00011 21.8 0.0 0.00014 21.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_3 PF01596.12 gi|298674706|ref|YP_003726456.1| - 0.00014 20.9 0.0 0.00018 20.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.13 gi|298674706|ref|YP_003726456.1| - 0.00015 21.3 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Nol1_Nop2_Fmu PF01189.12 gi|298674706|ref|YP_003726456.1| - 0.00029 20.3 0.0 0.00037 19.9 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Fibrillarin PF01269.12 gi|298674706|ref|YP_003726456.1| - 0.00045 19.2 0.0 0.00074 18.5 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_4 PF02390.12 gi|298674706|ref|YP_003726456.1| - 0.0027 16.7 0.0 0.0039 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Rsm22 PF09243.5 gi|298674706|ref|YP_003726456.1| - 0.0028 16.7 0.0 0.0036 16.3 0.0 1.1 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 NNMT_PNMT_TEMT PF01234.12 gi|298674706|ref|YP_003726456.1| - 0.0033 16.4 0.0 0.037 12.9 0.0 1.9 1 1 1 2 2 2 1 NNMT/PNMT/TEMT family Methyltransf_15 PF09445.5 gi|298674706|ref|YP_003726456.1| - 0.0034 16.9 0.1 0.028 13.9 0.0 2.0 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.1 gi|298674706|ref|YP_003726456.1| - 0.0034 17.0 0.0 0.0047 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|298674706|ref|YP_003726456.1| - 0.0045 16.5 0.0 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 DNA methylase Methyltransf_9 PF08003.6 gi|298674706|ref|YP_003726456.1| - 0.0079 14.9 0.0 0.0079 14.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_5 PF01795.14 gi|298674706|ref|YP_003726456.1| - 0.05 12.8 0.0 3 7.0 0.0 2.0 1 1 1 2 2 2 0 MraW methylase family DREV PF05219.7 gi|298674706|ref|YP_003726456.1| - 0.13 11.0 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase MetW PF07021.7 gi|298674706|ref|YP_003726456.1| - 0.14 11.5 0.0 0.27 10.6 0.0 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW FLILHELTA PF10306.4 gi|298674706|ref|YP_003726456.1| - 0.17 11.9 0.5 0.96 9.5 0.1 2.2 1 1 1 2 2 2 0 Hypothetical protein FLILHELTA RRXRR PF14239.1 gi|298674707|ref|YP_003726457.1| - 3.4e-56 189.3 3.0 5.2e-56 188.8 2.1 1.3 1 0 0 1 1 1 1 RRXRR protein HNH PF01844.18 gi|298674707|ref|YP_003726457.1| - 1.3e-10 40.9 8.0 2.9e-10 39.8 5.6 1.6 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|298674707|ref|YP_003726457.1| - 1.4e-05 24.7 0.1 2.9e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease zf-C4pol PF14260.1 gi|298674707|ref|YP_003726457.1| - 0.31 11.0 4.4 0.15 12.0 0.6 2.3 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta HisKA_2 PF07568.7 gi|298674708|ref|YP_003726458.1| - 6e-29 99.7 5.2 1.2e-28 98.7 3.6 1.5 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|298674708|ref|YP_003726458.1| - 6.4e-12 45.1 0.1 1.3e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|298674708|ref|YP_003726458.1| - 3.3e-07 30.6 0.2 5.2e-07 30.0 0.1 1.3 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298674708|ref|YP_003726458.1| - 1.3e-05 24.9 0.0 2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|298674708|ref|YP_003726458.1| - 0.00038 20.1 1.0 0.00077 19.1 0.7 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMD PF02627.15 gi|298674709|ref|YP_003726459.1| - 1.5e-12 47.1 0.1 1.7e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Rhomboid PF01694.17 gi|298674710|ref|YP_003726460.1| - 0.07 13.1 25.5 0.2 11.6 7.6 3.0 2 1 1 3 3 3 0 Rhomboid family DUF1724 PF08350.5 gi|298674711|ref|YP_003726461.1| - 4.2e-24 83.8 0.1 1e-23 82.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.7 gi|298674711|ref|YP_003726461.1| - 0.0084 15.7 0.3 0.019 14.6 0.2 1.5 1 0 0 1 1 1 1 HTH domain DUF4269 PF14091.1 gi|298674711|ref|YP_003726461.1| - 0.02 14.8 0.1 0.037 13.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4269) HTH_27 PF13463.1 gi|298674711|ref|YP_003726461.1| - 0.036 14.3 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|298674711|ref|YP_003726461.1| - 0.061 12.9 1.6 0.085 12.4 0.3 1.8 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_34 PF13601.1 gi|298674711|ref|YP_003726461.1| - 0.095 12.7 0.8 0.19 11.7 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|298674712|ref|YP_003726462.1| - 1.3e-11 44.1 0.0 1.9e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|298674712|ref|YP_003726462.1| - 2.6e-11 43.0 0.1 3.7e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|298674712|ref|YP_003726462.1| - 6e-06 25.8 0.1 7.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|298674712|ref|YP_003726462.1| - 2.2e-05 23.9 0.1 3.6e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 HTH domain PadR PF03551.9 gi|298674712|ref|YP_003726462.1| - 2.7e-05 23.8 0.3 5.4e-05 22.8 0.2 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|298674712|ref|YP_003726462.1| - 0.00018 21.4 0.2 0.00025 20.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|298674712|ref|YP_003726462.1| - 0.0006 19.4 0.0 0.00081 19.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|298674712|ref|YP_003726462.1| - 0.00091 18.7 0.1 0.0016 18.0 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|298674712|ref|YP_003726462.1| - 0.00097 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|298674712|ref|YP_003726462.1| - 0.0048 16.4 0.2 0.0067 16.0 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.1 gi|298674712|ref|YP_003726462.1| - 0.0052 16.1 0.1 0.0093 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|298674712|ref|YP_003726462.1| - 0.0087 16.1 0.1 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator Mga PF05043.8 gi|298674712|ref|YP_003726462.1| - 0.011 16.0 0.3 0.018 15.2 0.1 1.5 1 1 0 1 1 1 0 Mga helix-turn-helix domain HTH_26 PF13443.1 gi|298674712|ref|YP_003726462.1| - 0.028 14.6 0.0 0.08 13.1 0.0 1.7 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain B-block_TFIIIC PF04182.7 gi|298674712|ref|YP_003726462.1| - 0.063 13.1 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_29 PF13551.1 gi|298674712|ref|YP_003726462.1| - 0.069 13.3 0.1 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix IF2_N PF04760.10 gi|298674712|ref|YP_003726462.1| - 0.088 12.4 0.3 0.21 11.2 0.1 1.7 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_10 PF04967.7 gi|298674712|ref|YP_003726462.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.1 gi|298674712|ref|YP_003726462.1| - 0.11 12.5 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HN PF00423.14 gi|298674713|ref|YP_003726463.1| - 3e-05 22.5 0.5 3.1e-05 22.4 0.3 1.0 1 0 0 1 1 1 1 Haemagglutinin-neuraminidase IncA PF04156.9 gi|298674713|ref|YP_003726463.1| - 9.7e-05 22.0 0.0 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 IncA protein Prominin PF05478.6 gi|298674713|ref|YP_003726463.1| - 0.00057 17.5 0.0 0.00065 17.3 0.0 1.0 1 0 0 1 1 1 1 Prominin DUF4577 PF15145.1 gi|298674713|ref|YP_003726463.1| - 0.0018 18.1 0.0 0.002 18.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4577) Chordopox_A13L PF05961.6 gi|298674713|ref|YP_003726463.1| - 0.0028 17.5 0.3 0.0032 17.3 0.2 1.2 1 0 0 1 1 1 1 Chordopoxvirus A13L protein DUF1517 PF07466.6 gi|298674713|ref|YP_003726463.1| - 0.0038 16.2 0.0 0.0038 16.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1517) DUF948 PF06103.6 gi|298674713|ref|YP_003726463.1| - 0.0051 16.6 0.3 0.0058 16.4 0.2 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF1510 PF07423.6 gi|298674713|ref|YP_003726463.1| - 0.0058 16.0 0.3 0.0068 15.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) DUF1634 PF07843.6 gi|298674713|ref|YP_003726463.1| - 0.0061 16.1 0.0 0.0072 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) DUF1664 PF07889.7 gi|298674713|ref|YP_003726463.1| - 0.02 14.7 1.3 0.02 14.7 0.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4097 PF13349.1 gi|298674713|ref|YP_003726463.1| - 0.02 14.4 0.8 0.022 14.2 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) ODV-E18 PF10717.4 gi|298674713|ref|YP_003726463.1| - 0.021 14.2 0.2 0.027 13.9 0.1 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 BLOC1_2 PF10046.4 gi|298674713|ref|YP_003726463.1| - 0.026 14.6 0.8 0.031 14.4 0.5 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Peptidase_S49_N PF08496.5 gi|298674713|ref|YP_003726463.1| - 0.038 13.7 0.1 0.046 13.4 0.0 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal FlaC_arch PF05377.6 gi|298674713|ref|YP_003726463.1| - 0.04 13.8 2.8 0.058 13.3 1.9 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ETRAMP PF09716.5 gi|298674713|ref|YP_003726463.1| - 0.04 13.8 0.4 0.054 13.4 0.3 1.2 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Snapin_Pallidin PF14712.1 gi|298674713|ref|YP_003726463.1| - 0.041 14.1 0.1 0.046 14.0 0.1 1.1 1 0 0 1 1 1 0 Snapin/Pallidin DUF3573 PF12097.3 gi|298674713|ref|YP_003726463.1| - 0.048 12.2 0.5 0.052 12.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) SHP PF03579.8 gi|298674713|ref|YP_003726463.1| - 0.055 12.8 0.1 0.071 12.4 0.1 1.2 1 0 0 1 1 1 0 Small hydrophobic protein DUF2951 PF11166.3 gi|298674713|ref|YP_003726463.1| - 0.06 13.2 1.3 0.11 12.4 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) Syntaxin-6_N PF09177.6 gi|298674713|ref|YP_003726463.1| - 0.061 13.7 0.6 0.071 13.5 0.4 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal Bap31 PF05529.7 gi|298674713|ref|YP_003726463.1| - 0.061 12.7 0.0 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like PspB PF06667.7 gi|298674713|ref|YP_003726463.1| - 0.071 13.0 0.0 0.091 12.7 0.0 1.1 1 0 0 1 1 1 0 Phage shock protein B DUF2208 PF09973.4 gi|298674713|ref|YP_003726463.1| - 0.075 12.2 0.2 0.082 12.1 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Sigma_reg_N PF13800.1 gi|298674713|ref|YP_003726463.1| - 0.086 12.8 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal PV-1 PF06637.6 gi|298674713|ref|YP_003726463.1| - 0.093 11.2 0.0 0.098 11.2 0.0 1.2 1 0 0 1 1 1 0 PV-1 protein (PLVAP) DUF2500 PF10694.4 gi|298674713|ref|YP_003726463.1| - 0.1 12.6 0.1 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) Tetraspannin PF00335.15 gi|298674713|ref|YP_003726463.1| - 0.1 11.8 0.0 0.12 11.6 0.0 1.0 1 0 0 1 1 1 0 Tetraspanin family DUF3139 PF11337.3 gi|298674713|ref|YP_003726463.1| - 0.1 12.8 0.4 0.13 12.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) FixQ PF05545.6 gi|298674713|ref|YP_003726463.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ DUF2254 PF10011.4 gi|298674713|ref|YP_003726463.1| - 0.13 10.7 0.0 0.13 10.7 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Lig_chan PF00060.21 gi|298674713|ref|YP_003726463.1| - 0.14 11.8 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Ligand-gated ion channel CbiN PF02553.10 gi|298674713|ref|YP_003726463.1| - 0.14 12.1 0.1 0.22 11.5 0.0 1.5 1 1 0 1 1 1 0 Cobalt transport protein component CbiN DUF3317 PF11779.3 gi|298674713|ref|YP_003726463.1| - 0.62 9.5 3.0 0.87 9.0 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) DUF2762 PF10960.3 gi|298674713|ref|YP_003726463.1| - 0.62 9.8 2.8 0.83 9.3 1.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2762) DUF4446 PF14584.1 gi|298674713|ref|YP_003726463.1| - 1.2 8.9 4.6 2.5 7.9 3.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) DUF3951 PF13131.1 gi|298674713|ref|YP_003726463.1| - 1.5 8.6 5.6 2.2 8.1 3.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) EzrA PF06160.7 gi|298674713|ref|YP_003726463.1| - 5 5.1 9.1 0.33 9.0 0.4 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF1212 PF06738.7 gi|298674713|ref|YP_003726463.1| - 7.5 5.9 6.2 3.7 6.9 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) Gate PF07670.9 gi|298674715|ref|YP_003726465.1| - 7.8e-12 45.0 15.3 4.9e-07 29.6 1.0 3.1 2 2 1 3 3 3 2 Nucleoside recognition Fer4 PF00037.22 gi|298674716|ref|YP_003726466.1| - 1.4e-17 62.4 21.1 5.8e-09 35.1 4.3 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674716|ref|YP_003726466.1| - 9.3e-14 50.9 26.5 1.8e-10 40.4 10.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674716|ref|YP_003726466.1| - 4e-12 46.3 14.6 4.8e-12 46.0 10.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674716|ref|YP_003726466.1| - 5.7e-12 44.9 21.4 6.5e-06 25.7 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298674716|ref|YP_003726466.1| - 1.1e-11 44.7 13.9 1.5e-11 44.3 9.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674716|ref|YP_003726466.1| - 3.5e-11 42.3 18.8 4.6e-06 26.2 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674716|ref|YP_003726466.1| - 9.3e-11 41.4 17.4 1.1e-09 38.0 12.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674716|ref|YP_003726466.1| - 1.1e-09 38.8 12.7 3.4e-05 24.4 1.0 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|298674716|ref|YP_003726466.1| - 7.6e-09 35.1 13.7 0.00027 21.0 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674716|ref|YP_003726466.1| - 2e-07 31.4 20.1 2.1e-05 25.0 13.9 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|298674716|ref|YP_003726466.1| - 5.5e-07 29.4 7.3 6.1e-07 29.2 5.1 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298674716|ref|YP_003726466.1| - 1.2e-06 28.4 14.1 9.6e-06 25.5 9.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674716|ref|YP_003726466.1| - 3.2e-05 24.2 17.2 0.0072 16.7 3.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298674716|ref|YP_003726466.1| - 4.7e-05 23.6 20.7 0.015 15.8 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298674716|ref|YP_003726466.1| - 0.00015 22.0 12.1 0.019 15.2 1.1 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298674716|ref|YP_003726466.1| - 0.00043 20.5 22.3 0.046 14.1 15.4 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|298674716|ref|YP_003726466.1| - 0.19 11.5 7.0 0.24 11.2 4.9 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster zf-CXXC PF02008.15 gi|298674716|ref|YP_003726466.1| - 0.74 9.6 9.8 2.3 8.0 1.4 2.1 2 0 0 2 2 2 0 CXXC zinc finger domain Gin PF10764.4 gi|298674716|ref|YP_003726466.1| - 1.8 8.3 9.3 1.9 8.2 1.1 2.3 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin AFP PF02420.10 gi|298674716|ref|YP_003726466.1| - 6.2 7.3 12.2 17 5.9 1.8 2.9 2 1 1 3 3 3 0 Insect antifreeze protein repeat DUF2070 PF09843.4 gi|298674717|ref|YP_003726467.1| - 2.3e-07 30.4 0.2 4.6e-07 29.4 0.1 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2070) TCR_zetazeta PF11628.3 gi|298674717|ref|YP_003726467.1| - 1.3 8.4 9.5 9.8 5.7 0.7 3.1 2 0 0 2 2 2 0 T-cell surface glycoprotein CD3 zeta chain Ribonuc_red_lgC PF02867.10 gi|298674718|ref|YP_003726468.1| - 1.3e-169 565.2 1.8 2.3e-120 402.7 0.0 2.4 1 1 1 2 2 2 2 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|298674718|ref|YP_003726468.1| - 1.6e-28 98.3 0.1 3.7e-28 97.1 0.0 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|298674718|ref|YP_003726468.1| - 1.3e-24 86.4 3.8 3.1e-24 85.2 1.5 2.4 2 0 0 2 2 2 1 ATP cone domain NRDD PF13597.1 gi|298674718|ref|YP_003726468.1| - 0.00055 18.1 0.7 0.0011 17.1 0.5 1.4 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase RA PF00788.18 gi|298674718|ref|YP_003726468.1| - 0.095 13.2 0.2 1.8 9.1 0.0 2.3 2 0 0 2 2 2 0 Ras association (RalGDS/AF-6) domain Ribosomal_S10 PF00338.17 gi|298674719|ref|YP_003726469.1| - 1.1e-30 105.3 0.0 1.2e-30 105.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|298674720|ref|YP_003726470.1| - 1.3e-57 194.3 0.0 1.8e-57 193.8 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|298674720|ref|YP_003726470.1| - 4.7e-31 106.8 0.5 1e-30 105.7 0.1 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|298674720|ref|YP_003726470.1| - 1.3e-17 63.6 1.1 3.2e-17 62.4 0.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|298674720|ref|YP_003726470.1| - 2.8e-07 30.4 0.0 1.1e-06 28.5 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|298674720|ref|YP_003726470.1| - 2.9e-06 26.8 0.2 1.1e-05 24.9 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|298674720|ref|YP_003726470.1| - 4.6e-05 23.8 0.0 0.00039 20.8 0.0 2.5 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|298674720|ref|YP_003726470.1| - 6.9e-05 22.1 0.0 0.0028 16.8 0.0 2.1 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|298674720|ref|YP_003726470.1| - 0.011 14.9 0.2 0.39 9.9 0.1 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|298674720|ref|YP_003726470.1| - 0.013 15.3 0.1 2.4 7.9 0.0 2.7 2 1 0 2 2 2 0 Dynamin family AAA_14 PF13173.1 gi|298674720|ref|YP_003726470.1| - 0.065 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|298674721|ref|YP_003726471.1| - 1.2e-60 204.2 0.3 2e-60 203.4 0.2 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|298674721|ref|YP_003726471.1| - 5e-31 106.7 0.0 1.8e-30 104.9 0.0 2.1 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|298674721|ref|YP_003726471.1| - 1.4e-24 85.7 1.7 2.6e-24 84.8 0.3 2.1 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|298674721|ref|YP_003726471.1| - 2e-22 78.8 0.0 5.7e-22 77.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|298674721|ref|YP_003726471.1| - 9.6e-16 57.6 0.8 2.4e-15 56.4 0.6 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|298674721|ref|YP_003726471.1| - 5.3e-05 23.1 0.0 0.00013 21.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|298674721|ref|YP_003726471.1| - 0.015 14.5 0.1 0.27 10.4 0.1 2.7 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF4473 PF14747.1 gi|298674721|ref|YP_003726471.1| - 0.069 13.3 0.1 0.59 10.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4473) Ras PF00071.17 gi|298674721|ref|YP_003726471.1| - 0.078 12.3 0.1 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Ras family Ribosomal_S7 PF00177.16 gi|298674722|ref|YP_003726472.1| - 2.9e-35 121.0 1.7 3.4e-35 120.8 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|298674723|ref|YP_003726473.1| - 7.5e-37 125.4 0.2 8.6e-37 125.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|298674724|ref|YP_003726474.1| - 1.3e-19 69.5 2.4 3.6e-15 55.2 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|298674724|ref|YP_003726474.1| - 3e-15 55.7 2.5 4.8e-14 51.8 0.1 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|298674724|ref|YP_003726474.1| - 5.2e-06 26.0 0.6 0.012 15.2 0.0 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|298674724|ref|YP_003726474.1| - 0.00012 21.6 3.5 0.18 11.4 0.3 2.9 2 1 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|298674724|ref|YP_003726474.1| - 0.57 9.8 5.1 4.2 7.1 0.2 3.1 3 0 0 3 3 3 0 KH domain Ribosomal_L7Ae PF01248.21 gi|298674725|ref|YP_003726475.1| - 7.1e-14 51.0 0.0 9.2e-14 50.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|298674726|ref|YP_003726476.1| - 8.3e-54 182.7 1.5 1.1e-53 182.2 1.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Peptidase_M24 PF00557.19 gi|298674726|ref|YP_003726476.1| - 0.0028 17.2 0.8 0.0081 15.7 0.1 2.1 2 1 0 3 3 3 1 Metallopeptidase family M24 NAC PF01849.13 gi|298674726|ref|YP_003726476.1| - 0.065 12.7 0.1 0.24 10.9 0.0 1.9 1 0 0 1 1 1 0 NAC domain DUF768 PF05589.6 gi|298674726|ref|YP_003726476.1| - 0.11 12.4 0.6 4.4 7.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF768) RNA_pol_Rpb1_1 PF04997.7 gi|298674727|ref|YP_003726477.1| - 9e-90 301.3 0.4 1.9e-54 185.1 0.0 2.5 2 1 1 3 3 3 2 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|298674727|ref|YP_003726477.1| - 5.7e-66 221.5 0.1 1.2e-65 220.4 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|298674727|ref|YP_003726477.1| - 1.8e-35 122.0 0.0 5.8e-35 120.3 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|298674727|ref|YP_003726477.1| - 1.2e-30 106.6 0.1 2.3e-30 105.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|298674727|ref|YP_003726477.1| - 1.6e-30 105.0 0.0 4.2e-30 103.6 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb2_6 PF00562.23 gi|298674728|ref|YP_003726478.1| - 3.9e-121 404.4 0.0 5.1e-121 404.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|298674728|ref|YP_003726478.1| - 9.5e-29 99.4 0.3 2.6e-28 98.0 0.2 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|298674728|ref|YP_003726478.1| - 1.1e-22 79.6 1.1 2.2e-22 78.6 0.8 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|298674728|ref|YP_003726478.1| - 3.1e-16 59.0 1.0 7.2e-16 57.8 0.7 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 zf-ribbon_3 PF13248.1 gi|298674728|ref|YP_003726478.1| - 0.02 14.1 0.6 0.038 13.1 0.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain RNA_pol_Rpb2_45 PF10385.4 gi|298674728|ref|YP_003726478.1| - 0.081 12.7 0.6 0.46 10.3 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain DUF1451 PF07295.6 gi|298674728|ref|YP_003726478.1| - 0.16 11.6 1.2 0.33 10.7 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) IBR PF01485.16 gi|298674728|ref|YP_003726478.1| - 0.19 11.6 1.0 0.35 10.7 0.7 1.3 1 0 0 1 1 1 0 IBR domain OrfB_Zn_ribbon PF07282.6 gi|298674728|ref|YP_003726478.1| - 0.25 11.0 1.1 0.52 10.0 0.8 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RNA_pol_Rpb2_1 PF04563.10 gi|298674729|ref|YP_003726479.1| - 2.8e-61 206.0 0.1 3.5e-61 205.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|298674729|ref|YP_003726479.1| - 2.3e-26 92.4 0.0 3.9e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|298674729|ref|YP_003726479.1| - 5e-25 87.0 0.0 8.6e-25 86.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|298674730|ref|YP_003726480.1| - 4.2e-30 103.1 0.5 4.8e-30 102.9 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain AdoHcyase PF05221.12 gi|298674731|ref|YP_003726481.1| - 5.6e-60 202.5 0.5 6.2e-60 202.4 0.3 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|298674731|ref|YP_003726481.1| - 1.1e-46 158.6 1.8 1.1e-46 158.6 1.2 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|298674731|ref|YP_003726481.1| - 2.2e-10 39.9 0.4 4.6e-10 38.9 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|298674731|ref|YP_003726481.1| - 6.6e-06 25.5 0.1 1.6e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|298674731|ref|YP_003726481.1| - 0.0022 17.5 0.8 0.0088 15.6 0.3 2.1 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|298674731|ref|YP_003726481.1| - 0.022 14.7 0.1 0.084 12.8 0.1 2.1 1 0 0 1 1 1 0 TrkA-N domain Amidohydro_1 PF01979.15 gi|298674732|ref|YP_003726482.1| - 6.4e-59 200.2 0.7 7.9e-59 199.9 0.2 1.4 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|298674732|ref|YP_003726482.1| - 3.9e-16 58.6 1.5 9.7e-15 54.1 0.1 3.2 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|298674732|ref|YP_003726482.1| - 1.3e-15 58.2 0.1 1.7e-09 38.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|298674732|ref|YP_003726482.1| - 4.5e-13 49.1 0.1 8e-10 38.4 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|298674732|ref|YP_003726482.1| - 0.00037 19.5 0.0 0.00069 18.6 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Phosphorylase PF00343.15 gi|298674733|ref|YP_003726483.1| - 1.7e-22 79.1 0.5 3.9e-16 58.1 0.0 3.2 3 0 0 3 3 3 3 Carbohydrate phosphorylase Glyco_transf_5 PF08323.6 gi|298674733|ref|YP_003726483.1| - 5.1e-06 26.1 0.0 9.7e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Starch synthase catalytic domain 4HBT_2 PF13279.1 gi|298674734|ref|YP_003726484.1| - 1.5e-07 31.8 0.0 1.8e-07 31.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|298674734|ref|YP_003726484.1| - 3.1e-06 27.2 0.0 4.9e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|298674734|ref|YP_003726484.1| - 0.011 14.6 0.0 0.18 10.7 0.0 2.0 1 1 0 2 2 2 0 Acyl-ACP thioesterase LigD_N PF13298.1 gi|298674735|ref|YP_003726485.1| - 1.2e-42 144.2 0.0 1.6e-42 143.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) C1_2 PF03107.11 gi|298674736|ref|YP_003726486.1| - 0.012 15.6 1.3 0.77 9.9 0.1 2.1 2 0 0 2 2 2 0 C1 domain zinc_ribbon_4 PF13717.1 gi|298674736|ref|YP_003726486.1| - 0.079 12.6 2.8 3.1 7.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298674736|ref|YP_003726486.1| - 0.08 12.5 3.4 2.2 7.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|298674736|ref|YP_003726486.1| - 0.1 12.3 2.0 0.52 10.0 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF4428 PF14471.1 gi|298674736|ref|YP_003726486.1| - 0.12 12.1 1.1 0.63 9.8 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-H2C2_2 PF13465.1 gi|298674736|ref|YP_003726486.1| - 0.13 12.6 1.6 0.83 10.0 0.3 2.0 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|298674736|ref|YP_003726486.1| - 0.18 12.2 0.6 4.1 7.9 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Lar_restr_allev PF14354.1 gi|298674736|ref|YP_003726486.1| - 0.35 11.2 1.7 3.7 7.9 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|298674736|ref|YP_003726486.1| - 0.47 10.4 2.5 4.4 7.3 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|298674736|ref|YP_003726486.1| - 0.67 9.9 3.3 4.5 7.3 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger ADK_lid PF05191.9 gi|298674736|ref|YP_003726486.1| - 1.9 8.2 7.5 0.38 10.4 0.5 2.1 1 1 1 2 2 2 0 Adenylate kinase, active site lid Lyase_1 PF00206.15 gi|298674737|ref|YP_003726487.1| - 2.4e-55 187.9 0.5 4.3e-55 187.1 0.4 1.3 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|298674737|ref|YP_003726487.1| - 1.4e-28 98.6 0.3 2.9e-28 97.6 0.2 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|298674737|ref|YP_003726487.1| - 0.00066 19.7 0.4 0.13 12.3 0.0 3.2 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.4 gi|298674737|ref|YP_003726487.1| - 0.019 15.0 1.1 0.048 13.7 0.0 2.3 2 0 0 2 2 2 0 Fumarase C C-terminus AMP_N PF05195.11 gi|298674737|ref|YP_003726487.1| - 0.024 14.0 0.0 0.046 13.0 0.0 1.4 1 0 0 1 1 1 0 Aminopeptidase P, N-terminal domain DUF2284 PF10050.4 gi|298674738|ref|YP_003726488.1| - 1.3e-47 161.4 0.0 1.6e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF4239 PF14023.1 gi|298674738|ref|YP_003726488.1| - 0.0065 15.8 0.0 0.0089 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4239) T4_deiodinase PF00837.12 gi|298674738|ref|YP_003726488.1| - 0.042 12.8 0.0 0.064 12.2 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase DUF3091 PF11291.3 gi|298674739|ref|YP_003726489.1| - 0.11 12.4 0.5 0.13 12.2 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3091) zf-DNA_Pol PF08996.5 gi|298674739|ref|YP_003726489.1| - 0.14 11.4 0.3 0.15 11.3 0.2 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger URO-D PF01208.12 gi|298674740|ref|YP_003726490.1| - 2.3e-59 201.0 0.0 2.6e-59 200.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) ABC_tran PF00005.22 gi|298674741|ref|YP_003726491.1| - 4.2e-22 78.9 0.3 2.5e-10 40.7 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|298674741|ref|YP_003726491.1| - 1.7e-11 43.7 0.2 0.019 14.2 0.0 4.1 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|298674741|ref|YP_003726491.1| - 2.8e-10 40.6 6.7 0.00037 20.5 0.0 4.3 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|298674741|ref|YP_003726491.1| - 8.4e-08 31.6 0.2 0.0057 16.1 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|298674741|ref|YP_003726491.1| - 1.2e-06 28.6 0.0 0.0044 17.0 0.0 2.8 3 0 0 3 3 2 2 AAA ATPase domain BCA_ABC_TP_C PF12399.3 gi|298674741|ref|YP_003726491.1| - 2e-06 27.3 2.9 0.01 15.4 0.2 2.5 2 0 0 2 2 2 2 Branched-chain amino acid ATP-binding cassette transporter DnaJ_CXXCXGXG PF00684.14 gi|298674741|ref|YP_003726491.1| - 3.4e-06 27.0 6.7 0.0075 16.2 0.3 3.6 3 0 0 3 3 3 2 DnaJ central domain AAA_25 PF13481.1 gi|298674741|ref|YP_003726491.1| - 3.8e-06 26.4 0.2 0.11 11.8 0.0 3.2 4 0 0 4 4 3 2 AAA domain AAA_22 PF13401.1 gi|298674741|ref|YP_003726491.1| - 4.2e-06 26.9 2.3 0.29 11.2 0.0 4.4 5 0 0 5 5 4 2 AAA domain AAA_14 PF13173.1 gi|298674741|ref|YP_003726491.1| - 1.4e-05 24.9 0.1 0.79 9.6 0.0 3.8 3 0 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|298674741|ref|YP_003726491.1| - 1.6e-05 24.1 0.1 0.18 10.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|298674741|ref|YP_003726491.1| - 2.4e-05 24.2 0.3 0.0094 15.8 0.1 3.5 3 0 0 3 3 3 1 50S ribosome-binding GTPase APS_kinase PF01583.15 gi|298674741|ref|YP_003726491.1| - 6.2e-05 22.7 0.8 0.69 9.5 0.0 3.4 3 0 0 3 3 3 2 Adenylylsulphate kinase AAA_18 PF13238.1 gi|298674741|ref|YP_003726491.1| - 0.00015 22.0 0.2 1.2 9.4 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|298674741|ref|YP_003726491.1| - 0.00019 21.3 0.0 0.83 9.5 0.0 3.4 4 0 0 4 4 3 1 AAA domain AAA_10 PF12846.2 gi|298674741|ref|YP_003726491.1| - 0.00039 19.9 0.2 0.26 10.6 0.0 3.1 4 0 0 4 4 2 1 AAA-like domain Viral_helicase1 PF01443.13 gi|298674741|ref|YP_003726491.1| - 0.00065 19.2 0.1 0.025 14.0 0.1 2.7 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|298674741|ref|YP_003726491.1| - 0.00079 20.2 8.3 0.33 11.7 0.1 3.7 4 0 0 4 4 2 2 AAA domain MobB PF03205.9 gi|298674741|ref|YP_003726491.1| - 0.0014 18.3 0.4 0.097 12.3 0.1 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|298674741|ref|YP_003726491.1| - 0.0028 16.5 0.1 0.48 9.2 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein cobW PF02492.14 gi|298674741|ref|YP_003726491.1| - 0.0044 16.4 0.3 0.22 10.9 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arch_ATPase PF01637.13 gi|298674741|ref|YP_003726491.1| - 0.0071 16.0 0.0 4.6 6.8 0.0 2.9 3 0 0 3 3 2 0 Archaeal ATPase DUF2075 PF09848.4 gi|298674741|ref|YP_003726491.1| - 0.0075 15.2 0.0 2 7.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) PRK PF00485.13 gi|298674741|ref|YP_003726491.1| - 0.013 15.0 0.1 3.1 7.3 0.0 2.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Miro PF08477.8 gi|298674741|ref|YP_003726491.1| - 0.021 15.2 0.2 5.8 7.4 0.1 2.9 2 0 0 2 2 2 0 Miro-like protein AAA_19 PF13245.1 gi|298674741|ref|YP_003726491.1| - 0.022 14.5 0.1 5.8 6.7 0.0 2.6 2 0 0 2 2 2 0 Part of AAA domain NTPase_1 PF03266.10 gi|298674741|ref|YP_003726491.1| - 0.023 14.3 2.4 1.2 8.8 0.0 3.6 3 0 0 3 3 3 0 NTPase NACHT PF05729.7 gi|298674741|ref|YP_003726491.1| - 0.027 14.1 0.1 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|298674741|ref|YP_003726491.1| - 0.03 14.4 0.1 2.2 8.4 0.0 2.6 2 0 0 2 2 2 0 RNA helicase ArgK PF03308.11 gi|298674741|ref|YP_003726491.1| - 0.046 12.5 0.0 0.99 8.1 0.0 2.4 2 0 0 2 2 2 0 ArgK protein Zeta_toxin PF06414.7 gi|298674741|ref|YP_003726491.1| - 0.052 12.6 0.0 4 6.4 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.1 gi|298674741|ref|YP_003726491.1| - 0.086 12.4 0.0 18 4.8 0.0 2.6 3 0 0 3 3 2 0 AAA domain AAA_23 PF13476.1 gi|298674741|ref|YP_003726491.1| - 0.087 13.1 7.6 0.69 10.2 0.1 3.2 3 1 0 3 3 3 0 AAA domain Zn_Tnp_IS91 PF14319.1 gi|298674741|ref|YP_003726491.1| - 0.11 12.0 1.4 0.38 10.2 0.0 2.5 3 0 0 3 3 2 0 Transposase zinc-binding domain SbcCD_C PF13558.1 gi|298674741|ref|YP_003726491.1| - 0.11 12.3 0.3 26 4.8 0.1 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Pox_E10 PF04805.7 gi|298674741|ref|YP_003726491.1| - 0.13 11.8 0.4 0.33 10.5 0.3 1.7 1 0 0 1 1 1 0 E10-like protein conserved region RNA12 PF10443.4 gi|298674741|ref|YP_003726491.1| - 0.15 10.5 0.0 2.2 6.6 0.0 2.1 2 0 0 2 2 2 0 RNA12 protein Zn-ribbon_8 PF09723.5 gi|298674741|ref|YP_003726491.1| - 0.22 11.5 13.7 0.12 12.3 0.5 4.2 4 0 0 4 4 4 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|298674741|ref|YP_003726491.1| - 3.3 7.1 9.5 23 4.3 0.0 4.4 4 0 0 4 4 4 0 TFIIB zinc-binding UPF0150 PF03681.10 gi|298674742|ref|YP_003726492.1| - 3e-11 42.7 0.0 3.7e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) Bac_DNA_binding PF00216.16 gi|298674742|ref|YP_003726492.1| - 0.057 13.4 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial DNA-binding protein TatD_DNase PF01026.16 gi|298674743|ref|YP_003726493.1| - 9.1e-27 93.8 0.0 1.1e-26 93.5 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Iso_dh PF00180.15 gi|298674744|ref|YP_003726494.1| - 1.2e-86 290.8 0.0 1.4e-86 290.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Mt_ATP-synt_D PF05873.7 gi|298674744|ref|YP_003726494.1| - 0.065 12.8 0.3 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) HMGL-like PF00682.14 gi|298674745|ref|YP_003726495.1| - 5.6e-32 111.2 0.0 8.1e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Spc7 PF08317.6 gi|298674745|ref|YP_003726495.1| - 0.0011 17.7 0.1 0.0019 16.9 0.0 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein ACT PF01842.20 gi|298674746|ref|YP_003726496.1| - 0.00016 21.0 0.1 0.0008 18.8 0.1 2.2 1 1 0 1 1 1 1 ACT domain CM_2 PF01817.16 gi|298674746|ref|YP_003726496.1| - 0.00024 21.1 0.3 0.00053 20.0 0.2 1.5 1 0 0 1 1 1 1 Chorismate mutase type II ACT_7 PF13840.1 gi|298674746|ref|YP_003726496.1| - 0.049 13.1 0.1 0.1 12.1 0.1 1.5 1 0 0 1 1 1 0 ACT domain ACT_4 PF13291.1 gi|298674746|ref|YP_003726496.1| - 0.074 13.4 0.0 0.31 11.4 0.0 2.0 2 0 0 2 2 2 0 ACT domain GDI PF00996.13 gi|298674746|ref|YP_003726496.1| - 0.12 10.7 0.1 0.15 10.3 0.0 1.1 1 0 0 1 1 1 0 GDP dissociation inhibitor FAD_binding_3 PF01494.14 gi|298674747|ref|YP_003726497.1| - 2.4e-14 53.1 2.5 3.9e-07 29.4 0.3 3.0 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|298674747|ref|YP_003726497.1| - 4.4e-13 49.1 0.2 6.4e-13 48.5 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|298674747|ref|YP_003726497.1| - 1.3e-11 44.0 0.1 2.4e-09 36.5 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|298674747|ref|YP_003726497.1| - 2.1e-10 39.8 0.0 2.9e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase DAO PF01266.19 gi|298674747|ref|YP_003726497.1| - 2.2e-09 36.7 2.2 0.0004 19.3 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|298674747|ref|YP_003726497.1| - 7.6e-08 32.4 2.7 8.4e-08 32.3 1.3 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|298674747|ref|YP_003726497.1| - 2.7e-07 29.9 1.8 5.8e-07 28.8 1.3 1.6 1 1 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|298674747|ref|YP_003726497.1| - 1.7e-06 26.8 2.3 1.9e-06 26.6 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|298674747|ref|YP_003726497.1| - 3.3e-05 22.9 1.1 4.9e-05 22.3 0.2 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|298674747|ref|YP_003726497.1| - 0.00012 22.0 0.3 0.00036 20.4 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|298674747|ref|YP_003726497.1| - 0.00085 18.2 1.0 0.00085 18.2 0.7 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|298674747|ref|YP_003726497.1| - 0.0022 18.0 0.2 0.0088 16.1 0.2 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase PF05221.12 gi|298674748|ref|YP_003726498.1| - 3.7e-58 196.5 0.1 4.1e-58 196.4 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|298674748|ref|YP_003726498.1| - 2.1e-51 174.0 1.8 2.4e-51 173.8 0.4 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|298674748|ref|YP_003726498.1| - 1.7e-08 33.8 0.1 3.3e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|298674748|ref|YP_003726498.1| - 4.6e-06 26.0 0.0 8.5e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|298674748|ref|YP_003726498.1| - 0.0058 16.2 1.6 0.039 13.5 0.1 2.7 2 1 1 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Amidohydro_1 PF01979.15 gi|298674749|ref|YP_003726499.1| - 5e-60 203.9 0.7 6.1e-60 203.6 0.2 1.3 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|298674749|ref|YP_003726499.1| - 2.4e-17 63.8 0.3 6.6e-16 59.1 0.2 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|298674749|ref|YP_003726499.1| - 7.5e-16 57.7 2.1 9.2e-15 54.2 0.3 2.9 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|298674749|ref|YP_003726499.1| - 6.8e-14 51.8 0.6 1.5e-10 40.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|298674749|ref|YP_003726499.1| - 6.8e-05 21.9 0.0 0.00013 21.0 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase DUF137 PF02006.11 gi|298674750|ref|YP_003726500.1| - 1.5e-72 242.6 3.5 1.9e-72 242.3 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 CagA PF03507.8 gi|298674750|ref|YP_003726500.1| - 0.1 12.4 0.1 0.27 11.0 0.1 1.7 1 1 0 1 1 1 0 CagA exotoxin GHMP_kinases_N PF00288.21 gi|298674751|ref|YP_003726501.1| - 1.6e-09 37.7 1.6 2.8e-09 36.8 1.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|298674751|ref|YP_003726501.1| - 1.1e-06 28.7 4.7 1.1e-06 28.7 0.0 3.0 2 2 1 3 3 3 1 GHMP kinases C terminal DFP PF04127.10 gi|298674752|ref|YP_003726502.1| - 1.1e-50 171.8 0.1 3.9e-50 170.0 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|298674752|ref|YP_003726502.1| - 8.5e-28 96.6 0.2 1.5e-27 95.8 0.2 1.4 1 0 0 1 1 1 1 Flavoprotein AroM PF07302.6 gi|298674752|ref|YP_003726502.1| - 0.05 12.9 0.0 0.57 9.4 0.0 2.2 1 1 1 2 2 2 0 AroM protein Ank PF00023.25 gi|298674752|ref|YP_003726502.1| - 0.091 12.6 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Ankyrin repeat eRF1_2 PF03464.10 gi|298674753|ref|YP_003726503.1| - 7.6e-05 23.0 0.2 7.6e-05 23.0 0.2 1.8 2 0 0 2 2 1 1 eRF1 domain 2 DUF869 PF05911.6 gi|298674753|ref|YP_003726503.1| - 0.0023 16.2 15.9 0.0023 16.2 11.0 2.1 1 1 1 2 2 2 1 Plant protein of unknown function (DUF869) Baculo_PEP_N PF04512.7 gi|298674753|ref|YP_003726503.1| - 0.016 15.1 0.5 0.037 13.9 0.0 1.9 2 0 0 2 2 1 0 Baculovirus polyhedron envelope protein, PEP, N terminus FliJ PF02050.11 gi|298674753|ref|YP_003726503.1| - 0.019 15.0 0.2 0.019 15.0 0.2 2.8 2 1 1 3 3 3 0 Flagellar FliJ protein OmpH PF03938.9 gi|298674753|ref|YP_003726503.1| - 0.047 13.6 7.6 0.059 13.3 3.7 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) TMF_TATA_bd PF12325.3 gi|298674753|ref|YP_003726503.1| - 0.076 12.7 11.6 0.2 11.3 7.7 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|298674753|ref|YP_003726503.1| - 0.12 11.3 13.3 0.019 14.0 6.5 1.7 2 0 0 2 2 2 0 Autophagy protein Apg6 IncA PF04156.9 gi|298674753|ref|YP_003726503.1| - 0.13 11.8 21.5 0.057 13.0 12.4 2.1 2 1 0 2 2 2 0 IncA protein CENP-Q PF13094.1 gi|298674753|ref|YP_003726503.1| - 0.17 11.8 16.6 6.3 6.8 12.7 2.5 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Mnd1 PF03962.10 gi|298674753|ref|YP_003726503.1| - 0.31 10.6 17.7 0.55 9.8 10.3 2.3 2 1 0 2 2 2 0 Mnd1 family DUF4164 PF13747.1 gi|298674753|ref|YP_003726503.1| - 0.39 10.8 11.4 0.33 11.1 5.8 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) DUF641 PF04859.7 gi|298674753|ref|YP_003726503.1| - 0.43 10.3 11.2 0.29 10.8 4.9 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF1192 PF06698.6 gi|298674753|ref|YP_003726503.1| - 0.52 10.1 8.6 5.8 6.7 1.9 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Uds1 PF15456.1 gi|298674753|ref|YP_003726503.1| - 0.54 10.2 15.9 0.23 11.4 8.2 2.4 2 1 1 3 3 3 0 Up-regulated During Septation Atg14 PF10186.4 gi|298674753|ref|YP_003726503.1| - 0.74 8.6 11.1 0.24 10.2 5.4 1.9 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 BRE1 PF08647.6 gi|298674753|ref|YP_003726503.1| - 1.4 8.8 18.4 0.097 12.6 7.9 2.6 3 0 0 3 3 2 0 BRE1 E3 ubiquitin ligase HAUS5 PF14817.1 gi|298674753|ref|YP_003726503.1| - 1.8 7.0 14.0 4.4 5.7 9.0 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 DUF4407 PF14362.1 gi|298674753|ref|YP_003726503.1| - 2 7.2 6.2 3.5 6.4 4.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CENP-F_leu_zip PF10473.4 gi|298674753|ref|YP_003726503.1| - 3.1 7.6 24.0 0.49 10.2 12.0 2.8 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 THOC7 PF05615.8 gi|298674753|ref|YP_003726503.1| - 4.6 7.5 18.7 3.7 7.8 10.4 2.5 1 1 1 2 2 2 0 Tho complex subunit 7 YlqD PF11068.3 gi|298674753|ref|YP_003726503.1| - 4.9 7.2 15.1 6.4 6.8 7.8 2.4 2 0 0 2 2 2 0 YlqD protein Laminin_I PF06008.9 gi|298674753|ref|YP_003726503.1| - 5 6.3 18.6 0.17 11.2 8.0 2.2 3 1 0 3 3 3 0 Laminin Domain I DUF724 PF05266.9 gi|298674753|ref|YP_003726503.1| - 5.8 6.4 15.1 1.1 8.8 7.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF4200 PF13863.1 gi|298674753|ref|YP_003726503.1| - 9.1 6.2 26.3 2.4 8.1 14.8 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4200) HTH_1 PF00126.22 gi|298674754|ref|YP_003726504.1| - 0.007 16.0 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix protein, lysR family Borealin PF10512.4 gi|298674754|ref|YP_003726504.1| - 0.15 12.0 1.6 3 7.8 0.1 2.0 1 1 1 2 2 2 0 Cell division cycle-associated protein 8 RHH_1 PF01402.16 gi|298674754|ref|YP_003726504.1| - 0.21 11.5 3.1 7.6 6.6 0.1 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family FtsJ PF01728.14 gi|298674755|ref|YP_003726505.1| - 1.5e-58 197.7 0.0 1.9e-58 197.4 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|298674755|ref|YP_003726505.1| - 6.1e-09 35.5 1.5 1.5e-08 34.3 1.1 1.7 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|298674755|ref|YP_003726505.1| - 3.8e-06 26.5 0.4 0.11 12.0 0.0 2.7 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674755|ref|YP_003726505.1| - 2.2e-05 24.2 0.0 0.00016 21.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298674755|ref|YP_003726505.1| - 0.00039 20.9 0.1 0.0048 17.4 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain NSP13 PF06460.7 gi|298674755|ref|YP_003726505.1| - 0.0035 16.2 0.1 0.0053 15.6 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NSP13 Methyltransf_11 PF08241.7 gi|298674755|ref|YP_003726505.1| - 0.0036 17.7 0.1 0.019 15.4 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Glyco_trans_1_3 PF13528.1 gi|298674755|ref|YP_003726505.1| - 0.041 13.0 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 1 CbiA PF01656.18 gi|298674755|ref|YP_003726505.1| - 0.06 12.7 0.0 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Methyltransf_26 PF13659.1 gi|298674755|ref|YP_003726505.1| - 0.079 12.9 0.0 0.33 11.0 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain CmcI PF04989.7 gi|298674755|ref|YP_003726505.1| - 0.097 11.9 0.1 0.18 11.0 0.1 1.3 1 0 0 1 1 1 0 Cephalosporin hydroxylase Methyltransf_2 PF00891.13 gi|298674755|ref|YP_003726505.1| - 0.098 11.8 0.0 0.59 9.2 0.0 1.9 2 0 0 2 2 2 0 O-methyltransferase OrfB_Zn_ribbon PF07282.6 gi|298674756|ref|YP_003726506.1| - 1.9e-25 88.2 3.2 4.1e-25 87.2 0.9 2.4 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298674756|ref|YP_003726506.1| - 1.3e-15 57.3 1.7 2.4e-15 56.5 1.0 1.6 1 1 0 1 1 1 1 Probable transposase HTH_OrfB_IS605 PF12323.3 gi|298674756|ref|YP_003726506.1| - 0.016 14.4 0.1 0.092 12.0 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Tnp_zf-ribbon_2 PF13842.1 gi|298674756|ref|YP_003726506.1| - 0.017 15.5 5.7 0.038 14.3 4.0 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon UPF0547 PF10571.4 gi|298674756|ref|YP_003726506.1| - 0.17 11.5 1.8 2.1 8.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|298674756|ref|YP_003726506.1| - 0.45 10.0 6.4 1.6 8.2 4.5 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|298674756|ref|YP_003726506.1| - 1.6 8.5 6.6 3.9 7.3 4.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|298674756|ref|YP_003726506.1| - 3 7.6 8.2 11 5.9 1.6 2.9 1 1 1 2 2 2 0 Ribosomal protein L37e Semialdhyde_dh PF01118.19 gi|298674757|ref|YP_003726507.1| - 1.6e-34 118.7 0.0 2.7e-34 118.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|298674757|ref|YP_003726507.1| - 5.9e-24 84.9 0.0 8.4e-24 84.4 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain F420_oxidored PF03807.12 gi|298674757|ref|YP_003726507.1| - 0.0049 17.2 0.0 0.01 16.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|298674757|ref|YP_003726507.1| - 0.057 13.9 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CBS PF00571.23 gi|298674758|ref|YP_003726508.1| - 7e-34 115.3 2.1 1.2e-16 60.1 0.1 2.1 2 0 0 2 2 2 2 CBS domain Thioredoxin_3 PF13192.1 gi|298674758|ref|YP_003726508.1| - 0.046 13.5 0.7 0.13 12.0 0.1 1.9 2 0 0 2 2 2 0 Thioredoxin domain Cache_3 PF14827.1 gi|298674758|ref|YP_003726508.1| - 0.099 12.5 0.4 11 5.9 0.0 2.5 2 1 0 2 2 2 0 Sensory domain of two-component sensor kinase ArgJ PF01960.13 gi|298674759|ref|YP_003726509.1| - 8e-141 468.9 7.7 9e-141 468.7 5.3 1.0 1 0 0 1 1 1 1 ArgJ family Bcl-2 PF00452.14 gi|298674759|ref|YP_003726509.1| - 0.037 14.1 0.0 0.084 12.9 0.0 1.7 1 0 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family ADP_PFK_GK PF04587.10 gi|298674760|ref|YP_003726510.1| - 2.2e-119 398.6 1.4 2.5e-119 398.4 1.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region ADP_PFK_GK PF04587.10 gi|298674761|ref|YP_003726511.1| - 5.1e-69 232.6 0.0 5.8e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region PfkB PF00294.19 gi|298674761|ref|YP_003726511.1| - 0.015 14.4 0.0 1.2 8.2 0.0 2.5 2 0 0 2 2 2 0 pfkB family carbohydrate kinase tRNA_NucTransf2 PF09249.6 gi|298674762|ref|YP_003726512.1| - 8.1e-43 144.9 0.0 1.7e-42 143.9 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|298674762|ref|YP_003726512.1| - 1.9e-13 50.5 0.1 8.7e-13 48.4 0.0 2.2 2 0 0 2 2 2 1 Nucleotidyltransferase domain ABC_tran PF00005.22 gi|298674763|ref|YP_003726513.1| - 8.9e-34 116.7 0.0 2.2e-33 115.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter CBS PF00571.23 gi|298674763|ref|YP_003726513.1| - 7.1e-14 51.3 1.0 2.3e-07 30.4 0.0 2.6 2 0 0 2 2 2 2 CBS domain AAA_21 PF13304.1 gi|298674763|ref|YP_003726513.1| - 1.1e-08 35.3 0.3 0.00044 20.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain ABC_ATPase PF09818.4 gi|298674763|ref|YP_003726513.1| - 1.4e-05 23.8 0.6 0.073 11.6 0.1 3.1 3 1 0 3 3 3 2 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|298674763|ref|YP_003726513.1| - 6.8e-05 22.3 0.0 0.00014 21.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|298674763|ref|YP_003726513.1| - 0.00015 21.0 0.1 0.00036 19.7 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|298674763|ref|YP_003726513.1| - 0.0007 19.6 0.2 0.0018 18.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|298674763|ref|YP_003726513.1| - 0.00077 18.4 0.1 0.091 11.6 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|298674763|ref|YP_003726513.1| - 0.0008 19.7 0.1 0.0019 18.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298674763|ref|YP_003726513.1| - 0.0021 18.1 1.2 0.016 15.3 0.5 2.4 2 1 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|298674763|ref|YP_003726513.1| - 0.0042 16.8 0.2 0.035 13.7 0.1 2.4 2 1 0 2 2 2 1 Archaeal ATPase AAA_15 PF13175.1 gi|298674763|ref|YP_003726513.1| - 0.0082 15.2 1.1 2.1 7.2 0.1 2.3 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|298674763|ref|YP_003726513.1| - 0.01 15.0 0.3 0.51 9.5 0.2 2.3 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|298674763|ref|YP_003726513.1| - 0.011 14.8 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|298674763|ref|YP_003726513.1| - 0.016 14.6 0.1 0.38 10.1 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|298674763|ref|YP_003726513.1| - 0.017 14.9 0.0 0.044 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|298674763|ref|YP_003726513.1| - 0.019 14.5 0.0 0.65 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|298674763|ref|YP_003726513.1| - 0.023 13.4 0.0 0.098 11.3 0.0 1.8 1 1 1 2 2 2 0 G-protein alpha subunit AAA_33 PF13671.1 gi|298674763|ref|YP_003726513.1| - 0.036 13.9 0.0 0.095 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|298674763|ref|YP_003726513.1| - 0.041 13.3 0.4 0.23 10.8 0.0 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|298674763|ref|YP_003726513.1| - 0.086 13.1 0.0 0.5 10.6 0.0 2.3 3 0 0 3 3 2 0 AAA domain AAA_5 PF07728.9 gi|298674763|ref|YP_003726513.1| - 0.087 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|298674763|ref|YP_003726513.1| - 0.1 12.2 0.0 0.35 10.4 0.0 2.0 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SbcCD_C PF13558.1 gi|298674763|ref|YP_003726513.1| - 0.1 12.5 1.0 0.57 10.1 0.7 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CPT PF07931.7 gi|298674763|ref|YP_003726513.1| - 0.1 12.2 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.1 gi|298674763|ref|YP_003726513.1| - 0.13 12.0 0.0 0.34 10.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|298674763|ref|YP_003726513.1| - 0.18 11.7 0.7 2.2 8.2 0.1 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.17 gi|298674764|ref|YP_003726514.1| - 2.5e-22 79.2 13.5 2.5e-22 79.2 9.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OpuAC PF04069.7 gi|298674765|ref|YP_003726515.1| - 2.5e-61 207.2 5.3 2.9e-61 207.0 3.7 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_5 PF00496.17 gi|298674765|ref|YP_003726515.1| - 0.0027 16.5 0.6 0.0047 15.8 0.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.7 gi|298674766|ref|YP_003726516.1| - 3e-68 229.9 7.1 3.5e-68 229.7 5.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_5 PF00496.17 gi|298674766|ref|YP_003726516.1| - 0.0042 15.9 1.6 0.0071 15.2 1.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Radical_SAM PF04055.16 gi|298674767|ref|YP_003726517.1| - 3.6e-06 27.2 0.1 1e-05 25.7 0.1 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298674767|ref|YP_003726517.1| - 1.5e-05 24.9 0.0 5.7e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298674767|ref|YP_003726517.1| - 7e-05 22.9 0.1 0.00022 21.3 0.1 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2551 PF10826.3 gi|298674768|ref|YP_003726518.1| - 6.5e-34 115.6 0.8 7.8e-34 115.4 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) FUR PF01475.14 gi|298674768|ref|YP_003726518.1| - 0.0064 16.4 0.1 0.0089 15.9 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_32 PF13565.1 gi|298674768|ref|YP_003726518.1| - 0.078 13.7 0.0 0.12 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Prenyltransf PF01255.14 gi|298674769|ref|YP_003726519.1| - 5.7e-73 244.7 0.2 7.3e-73 244.3 0.1 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase ADP_ribosyl_GH PF03747.9 gi|298674770|ref|YP_003726520.1| - 3.9e-62 210.6 0.0 4.5e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase STb_secrete PF09075.5 gi|298674770|ref|YP_003726520.1| - 0.21 11.4 2.3 0.97 9.3 0.1 2.8 3 0 0 3 3 3 0 Heat-stable enterotoxin B, secretory RNA_pol_A_bac PF01000.21 gi|298674771|ref|YP_003726521.1| - 4.6e-28 97.6 0.0 1.3e-27 96.1 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|298674771|ref|YP_003726521.1| - 1.2e-12 46.7 0.0 1.5e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|298674771|ref|YP_003726521.1| - 1.9e-08 34.5 7.3 1.9e-08 34.5 5.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298674771|ref|YP_003726521.1| - 3.1e-07 29.7 12.4 8e-05 22.0 2.1 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298674771|ref|YP_003726521.1| - 4.3e-07 30.0 9.2 4.3e-07 30.0 6.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674771|ref|YP_003726521.1| - 9e-07 28.6 13.5 9.6e-07 28.5 6.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674771|ref|YP_003726521.1| - 1.3e-06 28.9 11.6 0.0021 18.7 0.5 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|298674771|ref|YP_003726521.1| - 8.6e-06 25.7 12.0 0.00057 19.8 6.7 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674771|ref|YP_003726521.1| - 0.00097 18.9 2.4 0.00097 18.9 1.7 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298674771|ref|YP_003726521.1| - 0.0017 18.5 20.2 0.024 14.9 1.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298674771|ref|YP_003726521.1| - 0.002 18.4 19.4 0.048 14.0 9.0 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674771|ref|YP_003726521.1| - 0.0022 17.8 22.9 0.013 15.4 1.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674771|ref|YP_003726521.1| - 0.024 14.4 13.4 0.024 14.4 9.3 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298674771|ref|YP_003726521.1| - 0.034 14.7 1.3 0.034 14.7 0.9 2.9 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298674771|ref|YP_003726521.1| - 0.056 14.0 3.9 0.056 14.0 2.7 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674771|ref|YP_003726521.1| - 0.15 12.5 15.6 0.37 11.2 0.6 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain DUF1998 PF09369.5 gi|298674771|ref|YP_003726521.1| - 0.41 11.2 0.1 0.41 11.2 0.0 3.0 2 1 0 2 2 1 0 Domain of unknown function (DUF1998) Ribosomal_S11 PF00411.14 gi|298674772|ref|YP_003726522.1| - 1.4e-42 144.3 0.7 1.6e-42 144.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.5 gi|298674772|ref|YP_003726522.1| - 0.018 14.5 0.3 0.029 13.8 0.2 1.4 1 1 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|298674773|ref|YP_003726523.1| - 6.5e-13 47.8 0.0 1.3e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|298674773|ref|YP_003726523.1| - 0.0026 18.1 2.0 0.0039 17.5 0.8 1.9 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain S4_2 PF13275.1 gi|298674773|ref|YP_003726523.1| - 0.096 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 S4 domain Ribosomal_S13 PF00416.17 gi|298674774|ref|YP_003726524.1| - 2.5e-32 111.5 0.0 3e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|298674774|ref|YP_003726524.1| - 0.00076 18.1 0.0 0.00082 18.0 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_6 PF14579.1 gi|298674774|ref|YP_003726524.1| - 0.086 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif TruB_N PF01509.13 gi|298674775|ref|YP_003726525.1| - 3.7e-24 85.5 0.1 1.4e-20 74.0 0.1 3.5 2 1 0 2 2 2 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|298674775|ref|YP_003726525.1| - 1e-17 63.7 0.7 2e-17 62.8 0.5 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|298674775|ref|YP_003726525.1| - 4.4e-15 55.1 0.8 9.1e-15 54.1 0.1 1.9 2 0 0 2 2 2 1 PUA domain Cytidylate_kin2 PF13189.1 gi|298674776|ref|YP_003726526.1| - 6.5e-25 88.0 0.1 6.9e-24 84.7 0.0 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|298674776|ref|YP_003726526.1| - 1.4e-15 57.7 0.1 1.8e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|298674776|ref|YP_003726526.1| - 1.6e-11 45.0 0.1 3.8e-11 43.8 0.0 1.5 1 1 1 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|298674776|ref|YP_003726526.1| - 2.3e-06 27.1 0.0 3.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase ADK PF00406.17 gi|298674776|ref|YP_003726526.1| - 6.9e-05 22.7 0.0 0.00036 20.4 0.0 2.1 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|298674776|ref|YP_003726526.1| - 0.0012 18.2 0.0 0.32 10.3 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase SKI PF01202.17 gi|298674776|ref|YP_003726526.1| - 0.0018 18.1 0.1 0.0028 17.5 0.0 1.3 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|298674776|ref|YP_003726526.1| - 0.0026 17.7 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|298674776|ref|YP_003726526.1| - 0.0034 17.2 0.0 0.027 14.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain TroA PF01297.12 gi|298674776|ref|YP_003726526.1| - 0.066 12.4 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Periplasmic solute binding protein family DUF1997 PF09366.5 gi|298674776|ref|YP_003726526.1| - 0.094 12.4 0.0 0.24 11.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1997) DUF106 PF01956.11 gi|298674777|ref|YP_003726527.1| - 3.3e-46 156.9 8.9 4.9e-46 156.3 6.2 1.3 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF4446 PF14584.1 gi|298674777|ref|YP_003726527.1| - 0.044 13.6 2.2 0.082 12.7 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF4634 PF15465.1 gi|298674777|ref|YP_003726527.1| - 0.057 13.6 0.2 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4634) DUF4231 PF14015.1 gi|298674777|ref|YP_003726527.1| - 0.12 12.3 1.5 0.2 11.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) ADK PF00406.17 gi|298674778|ref|YP_003726528.1| - 3.9e-60 202.0 0.0 4.6e-60 201.8 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|298674778|ref|YP_003726528.1| - 9.5e-19 66.7 4.2 2.9e-18 65.2 2.3 2.3 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|298674778|ref|YP_003726528.1| - 1.1e-10 42.3 0.3 2.7e-10 41.1 0.2 1.8 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|298674778|ref|YP_003726528.1| - 8.9e-07 29.2 0.8 1.7e-06 28.4 0.1 1.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|298674778|ref|YP_003726528.1| - 4e-06 26.7 0.0 1e-05 25.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain Prok-RING_1 PF14446.1 gi|298674778|ref|YP_003726528.1| - 0.0078 15.9 2.2 1.2 8.9 0.1 2.3 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 Zn_ribbon_recom PF13408.1 gi|298674778|ref|YP_003726528.1| - 0.013 15.7 0.4 2 8.7 0.0 2.5 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Thymidylate_kin PF02223.12 gi|298674778|ref|YP_003726528.1| - 0.013 14.8 0.2 0.29 10.5 0.0 2.5 2 1 1 3 3 3 0 Thymidylate kinase Mg_chelatase PF01078.16 gi|298674778|ref|YP_003726528.1| - 0.04 13.0 0.0 0.17 11.0 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DZR PF12773.2 gi|298674778|ref|YP_003726528.1| - 0.047 13.5 0.3 0.087 12.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon AAA_28 PF13521.1 gi|298674778|ref|YP_003726528.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|298674778|ref|YP_003726528.1| - 0.12 11.5 0.0 0.2 10.7 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin RRN7 PF11781.3 gi|298674778|ref|YP_003726528.1| - 0.12 11.9 1.8 2.5 7.6 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 GFA PF04828.9 gi|298674778|ref|YP_003726528.1| - 0.13 12.2 0.4 3.8 7.5 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme AAA PF00004.24 gi|298674778|ref|YP_003726528.1| - 0.14 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298674778|ref|YP_003726528.1| - 0.14 12.3 0.1 0.52 10.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain SecY PF00344.15 gi|298674779|ref|YP_003726529.1| - 4.5e-98 328.3 25.6 5.5e-98 328.0 17.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|298674779|ref|YP_003726529.1| - 1.6e-11 43.4 0.6 4.1e-11 42.1 0.4 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|298674780|ref|YP_003726530.1| - 3.9e-28 98.3 2.5 4.8e-28 98.1 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 tRNA-synt_1d PF00750.14 gi|298674780|ref|YP_003726530.1| - 0.015 14.1 0.1 0.016 14.0 0.1 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (R) Ribosomal_L30 PF00327.15 gi|298674781|ref|YP_003726531.1| - 1.3e-18 66.2 0.8 2e-18 65.6 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e CBS PF00571.23 gi|298674781|ref|YP_003726531.1| - 0.029 14.1 0.1 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 CBS domain Ribosomal_S5 PF00333.15 gi|298674782|ref|YP_003726532.1| - 1.7e-26 91.6 0.9 3.7e-26 90.6 0.6 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|298674782|ref|YP_003726532.1| - 6.5e-25 86.2 0.2 1e-24 85.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|298674783|ref|YP_003726533.1| - 9.9e-28 96.7 0.0 1.2e-27 96.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|298674783|ref|YP_003726533.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|298674784|ref|YP_003726534.1| - 1.2e-58 197.0 8.6 1.3e-58 196.9 6.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e CoA_binding_2 PF13380.1 gi|298674784|ref|YP_003726534.1| - 0.14 12.2 0.1 0.23 11.6 0.1 1.3 1 0 0 1 1 1 0 CoA binding domain Ribosomal_L32e PF01655.13 gi|298674785|ref|YP_003726535.1| - 3e-40 136.6 0.3 4.3e-40 136.1 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|298674786|ref|YP_003726536.1| - 1.2e-24 86.5 0.5 2.3e-11 44.0 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_S8 PF00410.14 gi|298674787|ref|YP_003726537.1| - 7.3e-24 84.0 0.0 9.9e-24 83.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|298674788|ref|YP_003726538.1| - 1.3e-19 69.2 4.5 1.3e-19 69.2 3.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|298674788|ref|YP_003726538.1| - 0.0018 18.0 1.5 0.002 17.9 1.1 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf-P11 PF03854.9 gi|298674788|ref|YP_003726538.1| - 0.0041 16.5 1.0 0.0051 16.2 0.7 1.1 1 0 0 1 1 1 1 P-11 zinc finger zf-UBR PF02207.15 gi|298674788|ref|YP_003726538.1| - 0.013 15.2 0.8 0.014 15.0 0.6 1.2 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) DUF1451 PF07295.6 gi|298674788|ref|YP_003726538.1| - 0.026 14.3 0.7 0.028 14.1 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|298674788|ref|YP_003726538.1| - 0.069 12.9 1.7 0.1 12.4 1.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|298674788|ref|YP_003726538.1| - 0.074 12.5 1.5 0.11 11.9 1.1 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|298674788|ref|YP_003726538.1| - 0.29 10.8 1.8 0.31 10.7 1.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|298674788|ref|YP_003726538.1| - 0.78 9.6 8.1 1.8 8.4 5.3 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rsm1 PF08600.5 gi|298674788|ref|YP_003726538.1| - 1.9 8.4 3.8 8.3 6.3 2.7 1.8 1 1 1 2 2 2 0 Rsm1-like zf-C2HC_2 PF13913.1 gi|298674788|ref|YP_003726538.1| - 7.1 6.4 10.3 15 5.3 2.3 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L5_C PF00673.16 gi|298674789|ref|YP_003726539.1| - 2.6e-28 97.5 0.0 3.7e-28 97.0 0.0 1.2 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|298674789|ref|YP_003726539.1| - 9.9e-18 63.6 0.0 1.9e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Sfi1_C PF10638.4 gi|298674789|ref|YP_003726539.1| - 0.099 13.0 0.4 0.29 11.5 0.1 1.8 2 0 0 2 2 2 0 Spindle body associated protein C-terminus NgoMIV_restric PF09015.5 gi|298674789|ref|YP_003726539.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 NgoMIV restriction enzyme Ribosomal_S4e PF00900.15 gi|298674790|ref|YP_003726540.1| - 1.1e-22 79.4 1.0 1.9e-22 78.6 0.7 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|298674790|ref|YP_003726540.1| - 1.8e-11 43.6 3.3 2.9e-11 43.0 2.3 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|298674790|ref|YP_003726540.1| - 1.8e-10 40.0 0.1 4.3e-10 38.8 0.0 1.7 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|298674790|ref|YP_003726540.1| - 0.00032 20.2 0.1 0.00032 20.2 0.1 2.3 3 0 0 3 3 3 1 KOW motif DUF3994 PF13159.1 gi|298674790|ref|YP_003726540.1| - 0.0013 18.9 0.2 0.0023 18.1 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3994) S4_2 PF13275.1 gi|298674790|ref|YP_003726540.1| - 0.02 14.4 0.0 0.095 12.3 0.0 2.1 2 0 0 2 2 2 0 S4 domain KOW PF00467.24 gi|298674791|ref|YP_003726541.1| - 5.1e-06 25.9 2.3 6e-06 25.7 0.9 1.7 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|298674792|ref|YP_003726542.1| - 6.5e-37 125.9 0.4 7.3e-37 125.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|298674793|ref|YP_003726543.1| - 2.1e-28 98.1 1.2 2.6e-28 97.8 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|298674794|ref|YP_003726544.1| - 2.2e-25 88.0 0.1 2.6e-25 87.8 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Phytase-like PF13449.1 gi|298674794|ref|YP_003726544.1| - 0.16 11.2 0.3 0.19 10.9 0.2 1.1 1 0 0 1 1 1 0 Esterase-like activity of phytase Ribosomal_L29 PF00831.18 gi|298674795|ref|YP_003726545.1| - 1.2e-16 60.1 0.1 1.3e-16 59.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Wbp11 PF09429.5 gi|298674795|ref|YP_003726545.1| - 0.098 12.6 0.2 0.12 12.4 0.2 1.2 1 0 0 1 1 1 0 WW domain binding protein 11 Ribosomal_S3_C PF00189.15 gi|298674796|ref|YP_003726546.1| - 4.8e-16 58.7 0.1 8.2e-16 57.9 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|298674796|ref|YP_003726546.1| - 5.8e-16 57.8 0.0 1.6e-15 56.3 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|298674796|ref|YP_003726546.1| - 0.0018 17.8 1.9 0.0067 16.0 0.4 2.5 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|298674796|ref|YP_003726546.1| - 0.023 14.3 0.9 0.092 12.4 0.4 2.2 2 0 0 2 2 2 0 KH domain KH_4 PF13083.1 gi|298674796|ref|YP_003726546.1| - 0.069 12.7 0.1 0.069 12.7 0.1 2.4 2 1 1 3 3 3 0 KH domain Ribosomal_L22 PF00237.14 gi|298674797|ref|YP_003726547.1| - 1.8e-33 114.5 0.4 2.2e-33 114.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|298674798|ref|YP_003726548.1| - 3.6e-21 74.5 0.2 6.1e-21 73.8 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|298674799|ref|YP_003726549.1| - 3.7e-41 139.9 0.3 5.2e-41 139.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|298674799|ref|YP_003726549.1| - 1.6e-13 50.3 0.2 4.8e-13 48.8 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|298674800|ref|YP_003726550.1| - 3.9e-16 58.7 2.3 6.1e-16 58.1 1.6 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 PRE_C2HC PF07530.6 gi|298674800|ref|YP_003726550.1| - 0.037 13.9 0.1 0.05 13.5 0.0 1.2 1 0 0 1 1 1 0 Associated with zinc fingers Asp_protease_2 PF13650.1 gi|298674800|ref|YP_003726550.1| - 0.1 13.0 0.0 0.12 12.8 0.0 1.1 1 0 0 1 1 1 0 Aspartyl protease RRM_6 PF14259.1 gi|298674800|ref|YP_003726550.1| - 0.11 12.5 0.1 0.2 11.6 0.0 1.5 1 1 1 2 2 2 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) UPF0223 PF05256.7 gi|298674800|ref|YP_003726550.1| - 0.13 12.4 0.4 0.15 12.1 0.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0223) CutA1 PF03091.10 gi|298674800|ref|YP_003726550.1| - 0.15 11.7 0.2 0.23 11.1 0.1 1.3 1 1 0 1 1 1 0 CutA1 divalent ion tolerance protein Ribosomal_L4 PF00573.17 gi|298674801|ref|YP_003726551.1| - 1.1e-45 155.3 1.4 1.3e-45 155.1 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family GutM PF06923.6 gi|298674801|ref|YP_003726551.1| - 0.041 13.5 0.1 0.074 12.6 0.1 1.3 1 0 0 1 1 1 0 Glucitol operon activator protein (GutM) Pil1 PF13805.1 gi|298674801|ref|YP_003726551.1| - 0.06 12.4 0.1 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Eisosome component PIL1 Ribosomal_L3 PF00297.17 gi|298674802|ref|YP_003726552.1| - 1.4e-72 244.2 1.0 1.7e-72 244.0 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 POR PF01558.13 gi|298674803|ref|YP_003726553.1| - 4.9e-37 127.4 0.0 5.8e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|298674804|ref|YP_003726554.1| - 4.5e-28 97.7 0.1 9.8e-28 96.6 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|298674804|ref|YP_003726554.1| - 1.4e-11 44.3 0.1 2.6e-11 43.4 0.1 1.4 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|298674804|ref|YP_003726554.1| - 2.7e-09 36.2 11.7 0.00011 21.6 1.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|298674804|ref|YP_003726554.1| - 9.8e-07 28.3 11.3 0.00012 21.8 1.7 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674804|ref|YP_003726554.1| - 1.8e-06 27.7 8.9 5.9e-06 26.0 6.2 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674804|ref|YP_003726554.1| - 4.9e-06 26.2 10.1 1.4e-05 24.7 7.0 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674804|ref|YP_003726554.1| - 1.4e-05 25.2 11.3 4.4e-05 23.6 7.8 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674804|ref|YP_003726554.1| - 0.00054 20.0 12.0 0.022 15.0 1.5 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298674804|ref|YP_003726554.1| - 0.00071 19.9 11.8 0.00071 19.9 8.2 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674804|ref|YP_003726554.1| - 0.0049 16.6 2.1 0.0049 16.6 1.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|298674804|ref|YP_003726554.1| - 0.017 14.6 0.1 0.12 11.9 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|298674804|ref|YP_003726554.1| - 0.11 11.4 0.1 4.6 6.0 0.0 2.2 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4_15 PF13459.1 gi|298674804|ref|YP_003726554.1| - 0.11 13.0 14.8 0.19 12.3 1.5 3.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|298674804|ref|YP_003726554.1| - 0.37 11.5 8.9 1.1 10.1 0.8 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|298674804|ref|YP_003726554.1| - 2.7 8.0 15.7 1.8 8.6 8.6 2.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674804|ref|YP_003726554.1| - 4 7.9 17.9 0.27 11.7 2.0 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674804|ref|YP_003726554.1| - 9.2 6.6 14.4 11 6.5 2.1 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Aldedh PF00171.17 gi|298674805|ref|YP_003726555.1| - 8.8e-15 53.9 0.0 8.7e-13 47.4 0.0 2.2 2 0 0 2 2 2 2 Aldehyde dehydrogenase family 5_3_exonuc PF01367.15 gi|298674805|ref|YP_003726555.1| - 0.066 13.4 0.9 12 6.1 0.0 3.3 2 2 2 4 4 4 0 5'-3' exonuclease, C-terminal SAM fold AA_kinase PF00696.23 gi|298674806|ref|YP_003726556.1| - 4e-38 131.3 0.4 5.3e-38 130.9 0.3 1.2 1 0 0 1 1 1 1 Amino acid kinase family PUA PF01472.15 gi|298674806|ref|YP_003726556.1| - 9.8e-19 66.8 0.7 7e-18 64.1 0.1 2.3 2 0 0 2 2 2 1 PUA domain MCPsignal PF00015.16 gi|298674807|ref|YP_003726557.1| - 1.5e-64 217.4 70.0 6.6e-60 202.2 27.2 4.2 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Cache_1 PF02743.13 gi|298674807|ref|YP_003726557.1| - 3.4e-16 58.5 0.1 1.6e-15 56.3 0.0 2.2 1 0 0 1 1 1 1 Cache domain HAMP PF00672.20 gi|298674807|ref|YP_003726557.1| - 3.5e-15 55.9 0.0 3.5e-15 55.9 0.0 5.1 5 1 1 6 6 4 1 HAMP domain DUF948 PF06103.6 gi|298674807|ref|YP_003726557.1| - 1.7e-05 24.5 46.2 0.043 13.6 3.7 6.2 4 2 2 6 6 6 4 Bacterial protein of unknown function (DUF948) GnsAB PF08178.6 gi|298674807|ref|YP_003726557.1| - 0.00023 20.7 1.9 0.005 16.4 0.1 3.5 3 0 0 3 3 3 1 GnsA/GnsB family Reo_sigmaC PF04582.7 gi|298674807|ref|YP_003726557.1| - 0.00023 20.4 48.0 0.0033 16.6 11.0 3.5 1 1 3 4 4 4 3 Reovirus sigma C capsid protein DUF1664 PF07889.7 gi|298674807|ref|YP_003726557.1| - 0.0038 17.0 36.9 0.033 13.9 3.6 4.8 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) Syntaxin-6_N PF09177.6 gi|298674807|ref|YP_003726557.1| - 0.054 13.9 44.2 0.36 11.2 4.1 5.7 3 2 2 6 6 6 0 Syntaxin 6, N-terminal AAA_27 PF13514.1 gi|298674807|ref|YP_003726557.1| - 0.068 10.8 33.5 0.0067 14.1 19.3 2.0 2 0 0 2 2 2 0 AAA domain Atg14 PF10186.4 gi|298674807|ref|YP_003726557.1| - 0.11 11.4 23.5 0.16 10.8 6.1 2.9 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|298674807|ref|YP_003726557.1| - 0.17 11.6 54.3 0.54 10.0 6.4 5.4 3 2 3 6 6 6 0 Laminin Domain II IncA PF04156.9 gi|298674807|ref|YP_003726557.1| - 0.38 10.3 40.3 0.096 12.2 3.8 4.4 2 1 2 4 4 4 0 IncA protein DUF1848 PF08902.6 gi|298674807|ref|YP_003726557.1| - 0.55 9.7 10.4 0.19 11.2 0.1 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF1848) NPV_P10 PF05531.7 gi|298674807|ref|YP_003726557.1| - 1.3 9.3 45.1 0.25 11.6 2.6 6.6 2 2 3 5 5 4 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.7 gi|298674807|ref|YP_003726557.1| - 1.6 6.8 41.0 0.069 11.3 9.6 3.5 3 1 1 4 4 4 0 Septation ring formation regulator, EzrA Vps53_N PF04100.7 gi|298674807|ref|YP_003726557.1| - 3.2 6.4 44.2 0.27 9.9 6.6 4.3 2 2 3 5 5 5 0 Vps53-like, N-terminal DUF869 PF05911.6 gi|298674807|ref|YP_003726557.1| - 3.5 5.7 52.8 0.2 9.8 14.7 2.9 2 1 1 3 3 3 0 Plant protein of unknown function (DUF869) V_ATPase_I PF01496.14 gi|298674807|ref|YP_003726557.1| - 3.8 5.2 31.8 43 1.7 20.3 2.7 2 1 0 2 2 2 0 V-type ATPase 116kDa subunit family PhageMin_Tail PF10145.4 gi|298674807|ref|YP_003726557.1| - 3.9 7.0 40.0 0.97 9.0 8.7 2.7 3 0 0 3 3 3 0 Phage-related minor tail protein Fib_alpha PF08702.5 gi|298674807|ref|YP_003726557.1| - 4.8 7.3 46.2 0.38 10.8 5.1 5.3 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Katanin_con80 PF13925.1 gi|298674807|ref|YP_003726557.1| - 6.7 6.4 16.0 11 5.7 0.9 4.0 1 1 2 4 4 4 0 con80 domain of Katanin CheW PF01584.14 gi|298674808|ref|YP_003726558.1| - 2.5e-42 143.6 3.2 2.9e-42 143.3 2.2 1.1 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.19 gi|298674809|ref|YP_003726559.1| - 8.2e-30 103.0 3.1 9.2e-30 102.9 2.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain 2-ph_phosp PF04029.9 gi|298674809|ref|YP_003726559.1| - 0.017 14.0 0.0 0.051 12.5 0.0 1.7 1 1 1 2 2 2 0 2-phosphosulpholactate phosphatase B12-binding PF02310.14 gi|298674809|ref|YP_003726559.1| - 0.025 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain CheB_methylest PF01339.12 gi|298674810|ref|YP_003726560.1| - 7.5e-65 217.7 0.2 1.6e-64 216.7 0.1 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|298674810|ref|YP_003726560.1| - 1.1e-21 76.9 0.1 3e-21 75.5 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain ATP-synt_ab PF00006.20 gi|298674810|ref|YP_003726560.1| - 0.066 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Peripla_BP_2 PF01497.13 gi|298674810|ref|YP_003726560.1| - 0.067 12.3 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Periplasmic binding protein CheW PF01584.14 gi|298674811|ref|YP_003726561.1| - 7.1e-23 80.5 1.5 1.4e-22 79.5 1.1 1.6 1 0 0 1 1 1 1 CheW-like domain P2 PF07194.6 gi|298674811|ref|YP_003726561.1| - 1.1e-22 79.7 3.8 1.1e-22 79.7 2.6 2.9 2 0 0 2 2 2 1 P2 response regulator binding domain HATPase_c PF02518.21 gi|298674811|ref|YP_003726561.1| - 7.2e-22 77.2 0.2 2.3e-21 75.5 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|298674811|ref|YP_003726561.1| - 2.1e-21 75.6 1.2 2.1e-21 75.6 0.9 2.1 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.9 gi|298674811|ref|YP_003726561.1| - 3e-17 62.7 4.0 3e-17 62.7 2.8 3.4 3 1 0 3 3 3 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|298674811|ref|YP_003726561.1| - 0.00065 19.3 0.1 0.00065 19.3 0.1 3.1 3 2 1 4 4 4 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|298674811|ref|YP_003726561.1| - 0.021 14.5 0.0 0.067 12.9 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain DASH_Dam1 PF08653.5 gi|298674811|ref|YP_003726561.1| - 1.9 8.2 7.8 1.5 8.6 0.6 3.3 3 0 0 3 3 3 0 DASH complex subunit Dam1 DUF1788 PF08747.6 gi|298674811|ref|YP_003726561.1| - 2.4 8.0 6.3 7.4 6.4 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1788) Mem_trans PF03547.13 gi|298674811|ref|YP_003726561.1| - 4 5.6 8.2 0.049 11.9 0.7 1.6 2 0 0 2 2 2 0 Membrane transport protein CheC PF04509.7 gi|298674812|ref|YP_003726562.1| - 2.3e-11 43.2 0.9 4.1e-10 39.2 0.3 2.4 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|298674812|ref|YP_003726562.1| - 0.0014 18.4 0.8 0.013 15.3 0.1 2.6 1 1 2 3 3 3 1 Chemotaxis phosphatase CheX CheR PF01739.13 gi|298674813|ref|YP_003726563.1| - 2.4e-58 196.6 0.2 3.1e-58 196.3 0.2 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|298674813|ref|YP_003726563.1| - 1e-14 53.6 0.2 2e-14 52.7 0.2 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|298674813|ref|YP_003726563.1| - 3.2e-06 27.5 0.1 1.1e-05 25.7 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674813|ref|YP_003726563.1| - 5.9e-05 22.7 0.1 0.18 11.4 0.0 2.6 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298674813|ref|YP_003726563.1| - 6.1e-05 23.5 0.0 0.00011 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674813|ref|YP_003726563.1| - 0.0023 18.2 0.0 0.0047 17.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674813|ref|YP_003726563.1| - 0.015 15.7 0.0 0.29 11.6 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain DUF2777 PF10949.3 gi|298674813|ref|YP_003726563.1| - 0.023 14.3 0.4 0.11 12.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2777) CheC PF04509.7 gi|298674814|ref|YP_003726564.1| - 2.4e-17 62.3 2.8 1.9e-08 33.8 0.1 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|298674814|ref|YP_003726564.1| - 2e-09 37.1 1.7 4.5e-06 26.4 0.2 2.2 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Cytochrom_C_asm PF01578.15 gi|298674818|ref|YP_003726568.1| - 2.9e-34 118.4 25.0 2.9e-34 118.4 17.3 2.4 2 1 0 2 2 2 1 Cytochrome C assembly protein DUF4051 PF13260.1 gi|298674818|ref|YP_003726568.1| - 0.0051 16.1 1.0 0.0051 16.1 0.7 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF4051) ResB PF05140.9 gi|298674819|ref|YP_003726569.1| - 0.018 13.6 1.8 0.04 12.4 0.0 2.0 2 0 0 2 2 2 0 ResB-like family DUF4181 PF13789.1 gi|298674819|ref|YP_003726569.1| - 0.46 10.4 9.0 0.035 14.0 1.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4181) DUF46 PF01864.12 gi|298674820|ref|YP_003726570.1| - 1.2e-48 165.3 4.6 1.3e-48 165.1 3.2 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|298674820|ref|YP_003726570.1| - 2.2e-06 27.5 7.5 2.2e-06 27.5 5.2 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family DUF204 PF02659.10 gi|298674820|ref|YP_003726570.1| - 0.055 13.5 10.9 0.59 10.3 0.1 3.3 3 1 0 3 3 3 0 Domain of unknown function DUF Pribosyltran PF00156.22 gi|298674821|ref|YP_003726571.1| - 2.7e-14 52.9 1.8 4.5e-14 52.2 0.5 1.9 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|298674821|ref|YP_003726571.1| - 0.05 12.8 0.0 0.07 12.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF3766 PF12611.3 gi|298674821|ref|YP_003726571.1| - 0.076 12.5 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3766) GARS_A PF01071.14 gi|298674822|ref|YP_003726572.1| - 2.3e-57 193.7 0.7 3.3e-57 193.2 0.1 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|298674822|ref|YP_003726572.1| - 2.4e-30 104.9 0.2 5.1e-30 103.8 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|298674822|ref|YP_003726572.1| - 1.5e-19 69.9 0.1 8.2e-19 67.5 0.1 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|298674822|ref|YP_003726572.1| - 1e-13 51.4 0.0 2.4e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|298674822|ref|YP_003726572.1| - 0.0019 17.3 0.0 0.0041 16.2 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|298674822|ref|YP_003726572.1| - 0.019 14.8 0.0 0.041 13.7 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|298674822|ref|YP_003726572.1| - 0.046 14.2 0.0 0.15 12.5 0.0 1.9 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Glyco_hydro_97 PF10566.4 gi|298674822|ref|YP_003726572.1| - 0.11 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycoside hydrolase 97 OTCace PF00185.19 gi|298674823|ref|YP_003726573.1| - 3.3e-56 189.5 0.0 6.4e-56 188.6 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|298674823|ref|YP_003726573.1| - 6.9e-52 174.8 0.1 1e-51 174.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATP-sulfurylase PF01747.12 gi|298674824|ref|YP_003726574.1| - 2.4e-89 298.2 0.0 3.1e-89 297.9 0.0 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|298674824|ref|YP_003726574.1| - 1.3e-51 174.1 0.0 2e-51 173.5 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain PAPS_reduct PF01507.14 gi|298674825|ref|YP_003726575.1| - 2.1e-52 177.4 0.0 2.6e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DUF39 PF01837.11 gi|298674826|ref|YP_003726576.1| - 5.7e-108 360.5 0.0 6.5e-108 360.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_7 PF12838.2 gi|298674826|ref|YP_003726576.1| - 0.00084 19.6 12.4 0.004 17.5 8.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674826|ref|YP_003726576.1| - 0.0037 17.0 10.8 0.019 14.8 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298674826|ref|YP_003726576.1| - 0.0048 17.1 10.9 0.012 15.8 7.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674826|ref|YP_003726576.1| - 0.015 15.0 11.1 0.039 13.7 7.6 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674826|ref|YP_003726576.1| - 0.088 12.7 12.2 0.71 9.9 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298674826|ref|YP_003726576.1| - 0.1 12.6 12.0 0.58 10.2 8.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674826|ref|YP_003726576.1| - 0.12 12.7 11.8 3.3 8.1 1.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674826|ref|YP_003726576.1| - 0.13 12.6 13.5 2.5 8.6 2.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298674826|ref|YP_003726576.1| - 0.16 11.8 10.1 0.79 9.6 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298674826|ref|YP_003726576.1| - 0.57 9.8 12.8 2.6 7.7 0.8 3.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298674826|ref|YP_003726576.1| - 0.64 10.8 8.6 1.7 9.4 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain TPP_enzyme_C PF02775.16 gi|298674827|ref|YP_003726577.1| - 4.5e-19 68.5 0.0 1.3e-18 66.9 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|298674827|ref|YP_003726577.1| - 5.5e-11 42.2 0.0 1.3e-10 41.0 0.0 1.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain COXG PF06240.8 gi|298674828|ref|YP_003726578.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) Lon_C PF05362.8 gi|298674829|ref|YP_003726579.1| - 1.6e-33 115.7 5.7 2.6e-33 115.0 3.9 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|298674829|ref|YP_003726579.1| - 1e-26 93.6 0.1 3.1e-17 62.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|298674829|ref|YP_003726579.1| - 1e-15 57.4 0.1 1.4e-09 37.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|298674829|ref|YP_003726579.1| - 4.1e-15 55.6 0.0 4.5e-08 32.7 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.9 gi|298674829|ref|YP_003726579.1| - 5.1e-12 45.6 0.0 4e-05 23.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|298674829|ref|YP_003726579.1| - 2e-11 43.4 1.1 4.3e-11 42.3 0.7 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.18 gi|298674829|ref|YP_003726579.1| - 4.6e-10 38.8 1.3 0.009 14.8 0.0 3.7 4 0 0 4 4 4 3 MCM2/3/5 family AAA PF00004.24 gi|298674829|ref|YP_003726579.1| - 1.1e-07 32.1 0.0 0.0098 16.0 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298674829|ref|YP_003726579.1| - 6.3e-06 26.3 0.0 0.0044 17.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|298674829|ref|YP_003726579.1| - 1.2e-05 24.4 0.0 0.0054 15.8 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|298674829|ref|YP_003726579.1| - 2.2e-05 24.5 0.0 0.11 12.5 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|298674829|ref|YP_003726579.1| - 4.5e-05 23.1 0.0 0.00023 20.8 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|298674829|ref|YP_003726579.1| - 0.00012 22.3 0.3 0.00069 19.9 0.0 2.4 4 0 0 4 4 1 1 AAA domain AAA_3 PF07726.6 gi|298674829|ref|YP_003726579.1| - 0.00014 21.4 0.0 0.4 10.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|298674829|ref|YP_003726579.1| - 0.00023 20.0 0.0 0.64 8.6 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus PhoH PF02562.11 gi|298674829|ref|YP_003726579.1| - 0.0017 17.6 0.0 0.0055 15.9 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.1 gi|298674829|ref|YP_003726579.1| - 0.0019 17.7 0.0 0.0045 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|298674829|ref|YP_003726579.1| - 0.0025 16.5 0.4 1.5 7.4 0.0 2.6 3 0 0 3 3 3 2 PrkA AAA domain AAA_16 PF13191.1 gi|298674829|ref|YP_003726579.1| - 0.0035 17.3 0.0 0.064 13.2 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain T2SE PF00437.15 gi|298674829|ref|YP_003726579.1| - 0.0053 15.6 0.0 0.03 13.2 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|298674829|ref|YP_003726579.1| - 0.0066 16.3 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|298674829|ref|YP_003726579.1| - 0.0076 15.6 0.0 0.022 14.1 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Parvo_NS1 PF01057.12 gi|298674829|ref|YP_003726579.1| - 0.016 14.0 0.0 0.028 13.3 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF815 PF05673.8 gi|298674829|ref|YP_003726579.1| - 0.023 13.6 0.0 0.048 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|298674829|ref|YP_003726579.1| - 0.024 13.7 0.0 0.048 12.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|298674829|ref|YP_003726579.1| - 0.032 14.5 0.0 0.1 12.8 0.0 1.8 1 0 0 1 1 1 0 ABC transporter DUF2075 PF09848.4 gi|298674829|ref|YP_003726579.1| - 0.033 13.1 0.0 0.069 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.4 gi|298674829|ref|YP_003726579.1| - 0.049 12.2 0.0 0.094 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.7 gi|298674829|ref|YP_003726579.1| - 0.067 12.8 0.0 0.25 10.9 0.0 2.0 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|298674829|ref|YP_003726579.1| - 0.091 13.5 0.0 0.37 11.6 0.0 2.1 1 0 0 1 1 1 0 AAA domain PmbA_TldD PF01523.11 gi|298674830|ref|YP_003726580.1| - 1e-79 267.8 0.8 1.3e-79 267.5 0.5 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase YppG PF14179.1 gi|298674830|ref|YP_003726580.1| - 0.016 15.8 0.1 0.035 14.7 0.1 1.5 1 0 0 1 1 1 0 YppG-like protein PmbA_TldD PF01523.11 gi|298674831|ref|YP_003726581.1| - 2.9e-62 210.5 0.5 4e-62 210.1 0.3 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Radical_SAM PF04055.16 gi|298674832|ref|YP_003726582.1| - 5.3e-08 33.2 0.9 8.4e-07 29.3 0.5 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298674832|ref|YP_003726582.1| - 4.2e-06 26.9 0.4 1.3e-05 25.3 0.1 1.8 1 1 0 2 2 2 1 4Fe-4S single cluster domain DNA_ligase_A_M PF01068.16 gi|298674833|ref|YP_003726583.1| - 2.2e-57 193.6 0.1 3.9e-57 192.8 0.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|298674833|ref|YP_003726583.1| - 8.2e-47 159.2 0.3 8.8e-46 155.9 0.0 2.5 2 1 1 3 3 3 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|298674833|ref|YP_003726583.1| - 7.5e-18 64.7 0.0 1.7e-17 63.5 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|298674833|ref|YP_003726583.1| - 0.0018 18.0 0.3 1.9 8.1 0.0 3.1 2 1 0 2 2 2 2 mRNA capping enzyme, catalytic domain Homoserine_dh PF00742.14 gi|298674834|ref|YP_003726584.1| - 2.6e-59 199.8 0.3 7.8e-59 198.3 0.1 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|298674834|ref|YP_003726584.1| - 2.9e-11 43.7 0.1 5.7e-11 42.8 0.0 1.5 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|298674834|ref|YP_003726584.1| - 1.1e-05 25.1 0.3 2.2e-05 24.1 0.2 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DXP_reductoisom PF02670.11 gi|298674834|ref|YP_003726584.1| - 0.03 14.8 0.1 0.062 13.8 0.1 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACT PF01842.20 gi|298674835|ref|YP_003726585.1| - 4e-05 22.9 0.1 0.0001 21.6 0.0 1.7 2 0 0 2 2 2 1 ACT domain Saccharop_dh_N PF04455.7 gi|298674835|ref|YP_003726585.1| - 0.035 14.2 1.8 0.2 11.7 0.4 2.0 1 1 1 2 2 2 0 LOR/SDH bifunctional enzyme conserved region ACT_4 PF13291.1 gi|298674835|ref|YP_003726585.1| - 0.049 13.9 0.1 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 ACT domain CarboxypepD_reg PF13620.1 gi|298674836|ref|YP_003726586.1| - 4.1e-07 29.9 0.4 6.6e-07 29.3 0.3 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|298674836|ref|YP_003726586.1| - 7.6e-07 29.0 0.2 1.7e-06 27.9 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) MarR_2 PF12802.2 gi|298674836|ref|YP_003726586.1| - 6.8e-05 22.4 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|298674836|ref|YP_003726586.1| - 0.00021 20.6 0.0 0.00045 19.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|298674836|ref|YP_003726586.1| - 0.00092 18.8 0.0 0.0058 16.3 0.0 2.1 1 1 1 2 2 2 1 MarR family HTH_27 PF13463.1 gi|298674836|ref|YP_003726586.1| - 0.0011 19.2 0.0 0.0024 18.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain FeoC PF09012.5 gi|298674836|ref|YP_003726586.1| - 0.0013 18.3 0.2 0.0032 17.1 0.0 1.6 2 0 0 2 2 2 1 FeoC like transcriptional regulator Fe_dep_repress PF01325.14 gi|298674836|ref|YP_003726586.1| - 0.0026 17.6 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|298674836|ref|YP_003726586.1| - 0.0049 16.5 0.2 0.0083 15.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|298674836|ref|YP_003726586.1| - 0.0053 16.7 0.0 0.0097 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RNA_pol_Rpc34 PF05158.7 gi|298674836|ref|YP_003726586.1| - 0.008 15.3 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit TMEM154 PF15102.1 gi|298674836|ref|YP_003726586.1| - 0.018 14.7 0.9 0.035 13.7 0.0 1.9 2 0 0 2 2 2 0 TMEM154 protein family RSN1_TM PF13967.1 gi|298674836|ref|YP_003726586.1| - 0.09 12.3 0.4 7 6.1 0.1 2.2 2 0 0 2 2 2 0 Late exocytosis, associated with Golgi transport Osmo_CC PF08946.5 gi|298674837|ref|YP_003726587.1| - 0.1 12.6 0.2 0.1 12.6 0.2 6.6 5 1 2 7 7 7 0 Osmosensory transporter coiled coil PilJ PF13675.1 gi|298674837|ref|YP_003726587.1| - 0.56 10.5 12.2 1.3 9.4 2.7 3.4 2 2 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term IncA PF04156.9 gi|298674837|ref|YP_003726587.1| - 3.1 7.3 51.0 0.033 13.7 14.4 3.2 2 1 0 2 2 2 0 IncA protein DUF1664 PF07889.7 gi|298674837|ref|YP_003726587.1| - 4.4 7.1 39.2 0.64 9.8 2.2 4.9 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) YihI PF04220.7 gi|298674838|ref|YP_003726588.1| - 0.089 12.1 1.2 0.11 11.8 0.8 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) DUF4398 PF14346.1 gi|298674839|ref|YP_003726589.1| - 0.0076 16.2 0.0 0.0076 16.2 0.0 3.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4398) UB2H PF14814.1 gi|298674839|ref|YP_003726589.1| - 0.017 14.8 0.6 2.9 7.6 0.0 2.8 3 0 0 3 3 3 0 Bifunctional transglycosylase second domain GTPase_Cys_C PF12631.2 gi|298674839|ref|YP_003726589.1| - 0.035 14.5 2.0 0.21 12.0 0.1 3.1 2 1 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE TINF2_N PF14973.1 gi|298674839|ref|YP_003726589.1| - 0.54 10.3 6.9 0.74 9.9 0.2 2.8 2 1 0 3 3 3 0 TERF1-interacting nuclear factor 2 N-terminus FliT PF05400.8 gi|298674839|ref|YP_003726589.1| - 0.64 10.4 3.9 1.7 9.1 0.2 2.9 3 1 0 3 3 3 0 Flagellar protein FliT DUF4359 PF14271.1 gi|298674839|ref|YP_003726589.1| - 1.1 9.6 4.4 1.2 9.5 0.1 2.8 1 1 1 3 3 3 0 Domain of unknown function (DUF4359) Peptidase_M48 PF01435.13 gi|298674840|ref|YP_003726590.1| - 1.8e-41 142.1 0.3 2.2e-41 141.9 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|298674840|ref|YP_003726590.1| - 6.1e-05 22.1 0.0 0.00012 21.1 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 Yip1 PF04893.12 gi|298674840|ref|YP_003726590.1| - 0.071 12.6 6.8 0.34 10.3 0.7 2.2 2 0 0 2 2 2 0 Yip1 domain ABC2_membrane_4 PF12730.2 gi|298674840|ref|YP_003726590.1| - 0.19 10.8 6.8 2 7.4 0.4 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein AIM24 PF01987.12 gi|298674841|ref|YP_003726591.1| - 1.2e-68 230.8 0.1 1.3e-68 230.6 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Thymidylat_synt PF00303.14 gi|298674842|ref|YP_003726592.1| - 3e-34 118.2 0.0 6.1e-33 113.9 0.0 2.0 1 1 0 1 1 1 1 Thymidylate synthase EPSP_synthase PF00275.15 gi|298674843|ref|YP_003726593.1| - 7.1e-111 370.5 0.2 8.3e-111 370.3 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.6 gi|298674843|ref|YP_003726593.1| - 0.028 14.7 0.2 0.18 12.1 0.1 2.5 2 1 0 2 2 2 0 Copper amine oxidase N-terminal domain MCR_alpha_N PF02745.10 gi|298674844|ref|YP_003726594.1| - 6e-137 455.1 0.2 7.7e-137 454.7 0.1 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|298674844|ref|YP_003726594.1| - 5.9e-67 223.4 5.0 6.1e-67 223.4 2.4 1.9 2 0 0 2 2 2 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.5 gi|298674844|ref|YP_003726594.1| - 0.045 13.7 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 BofC C-terminal domain Hexokinase_1 PF00349.16 gi|298674844|ref|YP_003726594.1| - 0.051 12.8 0.0 0.091 12.0 0.0 1.3 1 0 0 1 1 1 0 Hexokinase MCR_gamma PF02240.11 gi|298674845|ref|YP_003726595.1| - 1.1e-118 394.8 0.4 1.2e-118 394.7 0.2 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|298674846|ref|YP_003726596.1| - 1.5e-37 128.8 7.2 3.3e-33 114.6 1.3 3.0 1 1 2 3 3 3 3 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|298674847|ref|YP_003726597.1| - 4.1e-46 156.3 0.0 4.8e-46 156.1 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|298674848|ref|YP_003726598.1| - 8.8e-131 434.7 2.0 1.5e-130 434.0 1.4 1.4 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|298674848|ref|YP_003726598.1| - 7.4e-78 260.1 1.7 1.1e-77 259.5 1.2 1.3 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain Attacin_C PF03769.10 gi|298674848|ref|YP_003726598.1| - 0.022 14.9 0.0 0.055 13.6 0.0 1.7 2 0 0 2 2 2 0 Attacin, C-terminal region DUF512 PF04459.7 gi|298674850|ref|YP_003726600.1| - 5.5e-25 87.6 0.0 8.8e-25 86.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|298674850|ref|YP_003726600.1| - 8e-17 61.9 7.6 5e-14 52.8 4.3 3.4 2 1 0 2 2 2 1 Radical SAM superfamily Limkain-b1 PF11608.3 gi|298674850|ref|YP_003726600.1| - 0.028 14.1 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Limkain b1 Fer4_14 PF13394.1 gi|298674850|ref|YP_003726600.1| - 1.2 9.2 6.8 64 3.5 4.6 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298674850|ref|YP_003726600.1| - 2.3 8.3 8.5 31 4.6 5.5 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain PolC_DP2 PF03833.8 gi|298674851|ref|YP_003726601.1| - 0 1245.7 0.0 0 1245.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Methyltransf_31 PF13847.1 gi|298674852|ref|YP_003726602.1| - 1.7e-23 82.8 0.0 2.1e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674852|ref|YP_003726602.1| - 1.3e-22 80.1 0.0 1.9e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674852|ref|YP_003726602.1| - 3.2e-18 65.9 0.0 3.9e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298674852|ref|YP_003726602.1| - 1.6e-15 57.6 0.0 2.2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674852|ref|YP_003726602.1| - 4.9e-15 55.7 0.0 8.6e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298674852|ref|YP_003726602.1| - 5e-15 55.2 0.0 1.7e-14 53.5 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|298674852|ref|YP_003726602.1| - 1.4e-14 54.3 0.0 2.2e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298674852|ref|YP_003726602.1| - 2.2e-06 27.6 0.0 4.9e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|298674852|ref|YP_003726602.1| - 5.3e-06 25.7 0.1 2.3e-05 23.6 0.0 1.8 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|298674852|ref|YP_003726602.1| - 0.00014 20.9 0.3 0.0067 15.4 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.14 gi|298674852|ref|YP_003726602.1| - 0.00034 20.2 0.0 0.00049 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|298674852|ref|YP_003726602.1| - 0.00043 19.7 0.0 0.0022 17.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|298674852|ref|YP_003726602.1| - 0.001 18.7 0.0 0.004 16.8 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|298674852|ref|YP_003726602.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|298674852|ref|YP_003726602.1| - 0.0012 17.5 0.0 0.0014 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|298674852|ref|YP_003726602.1| - 0.0024 17.2 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DOT1 PF08123.8 gi|298674852|ref|YP_003726602.1| - 0.0073 15.6 0.0 0.029 13.6 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.8 gi|298674852|ref|YP_003726602.1| - 0.0084 15.2 0.0 0.022 13.9 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|298674852|ref|YP_003726602.1| - 0.0084 15.5 0.0 0.011 15.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|298674852|ref|YP_003726602.1| - 0.012 15.1 0.1 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Fibrillarin PF01269.12 gi|298674852|ref|YP_003726602.1| - 0.034 13.0 0.2 0.079 11.8 0.0 1.6 2 0 0 2 2 2 0 Fibrillarin N6_N4_Mtase PF01555.13 gi|298674852|ref|YP_003726602.1| - 0.047 13.1 0.7 0.49 9.8 0.3 2.5 2 1 0 2 2 2 0 DNA methylase FtsJ PF01728.14 gi|298674852|ref|YP_003726602.1| - 0.079 12.9 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Bin3 PF06859.7 gi|298674852|ref|YP_003726602.1| - 0.081 12.9 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) Rhodanese PF00581.15 gi|298674853|ref|YP_003726603.1| - 1.4e-21 76.9 0.0 4.3e-21 75.3 0.0 1.8 2 0 0 2 2 2 1 Rhodanese-like domain Ferritin_2 PF13668.1 gi|298674853|ref|YP_003726603.1| - 9.9e-11 41.7 2.2 1.4e-09 38.0 1.5 2.1 1 1 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|298674853|ref|YP_003726603.1| - 1.5e-09 38.2 7.7 9.6e-06 25.9 1.2 2.2 1 1 0 2 2 2 2 Rubrerythrin DUF2383 PF09537.5 gi|298674853|ref|YP_003726603.1| - 0.00037 20.6 4.3 0.00053 20.2 0.5 2.3 2 1 1 3 3 3 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|298674853|ref|YP_003726603.1| - 0.006 16.3 8.4 0.059 13.1 5.9 2.4 1 1 0 1 1 1 1 Ferritin-like domain FAD-SLDH PF12318.3 gi|298674853|ref|YP_003726603.1| - 0.11 12.2 0.2 0.27 10.9 0.0 1.7 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase DUF3231 PF11553.3 gi|298674853|ref|YP_003726603.1| - 0.28 10.6 3.9 0.15 11.5 0.7 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3231) Rhodanese PF00581.15 gi|298674854|ref|YP_003726604.1| - 3.9e-26 91.6 0.3 4.9e-17 62.2 0.1 2.6 2 0 0 2 2 2 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|298674854|ref|YP_003726604.1| - 5.7e-13 48.9 0.5 1.1e-12 48.0 0.3 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1673 PF07895.6 gi|298674855|ref|YP_003726605.1| - 0.034 13.6 0.3 0.036 13.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF4181 PF13789.1 gi|298674855|ref|YP_003726605.1| - 0.056 13.3 2.1 0.066 13.1 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4181) DUF3671 PF12420.3 gi|298674855|ref|YP_003726605.1| - 0.089 12.7 1.9 0.11 12.4 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function Sigma_reg_N PF13800.1 gi|298674855|ref|YP_003726605.1| - 0.38 10.8 6.4 1.2 9.2 4.4 1.9 1 1 0 1 1 1 0 Sigma factor regulator N-terminal Sua5_yciO_yrdC PF01300.13 gi|298674856|ref|YP_003726606.1| - 7.4e-56 188.2 0.0 1.2e-55 187.5 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|298674856|ref|YP_003726606.1| - 1.8e-26 92.6 0.0 3e-26 91.9 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding BChl_A PF02327.12 gi|298674856|ref|YP_003726606.1| - 0.086 11.4 0.5 8.5 4.8 0.1 2.1 2 0 0 2 2 2 0 Bacteriochlorophyll A protein NurA PF09376.5 gi|298674856|ref|YP_003726606.1| - 0.13 11.7 1.3 2.9 7.3 0.1 2.1 1 1 1 2 2 2 0 NurA domain RuBisCO_large PF00016.15 gi|298674857|ref|YP_003726607.1| - 7.6e-86 287.7 0.2 9.6e-86 287.4 0.2 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|298674857|ref|YP_003726607.1| - 4.6e-22 78.0 0.0 8.3e-21 73.9 0.0 2.3 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Spc97_Spc98 PF04130.8 gi|298674857|ref|YP_003726607.1| - 0.21 9.8 0.0 0.31 9.3 0.0 1.1 1 0 0 1 1 1 0 Spc97 / Spc98 family Lactamase_B PF00753.22 gi|298674858|ref|YP_003726608.1| - 2.7e-21 76.1 0.1 3.2e-21 75.8 0.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|298674858|ref|YP_003726608.1| - 4.7e-07 29.5 0.1 6.1e-07 29.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|298674858|ref|YP_003726608.1| - 0.001 18.8 0.1 0.0073 16.0 0.1 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain PAP2 PF01569.16 gi|298674859|ref|YP_003726609.1| - 1.6e-10 40.7 8.2 1.6e-10 40.7 5.7 2.2 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|298674859|ref|YP_003726609.1| - 0.00056 19.4 9.6 0.0011 18.4 6.7 1.5 1 0 0 1 1 1 1 PAP2 superfamily zinc_ribbon_5 PF13719.1 gi|298674859|ref|YP_003726609.1| - 0.48 10.0 2.3 0.79 9.3 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain PhaG_MnhG_YufB PF03334.9 gi|298674860|ref|YP_003726610.1| - 3.1e-26 91.2 12.1 3.7e-26 90.9 8.4 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|298674861|ref|YP_003726611.1| - 2.4e-18 66.1 4.8 2.4e-18 66.1 3.3 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF4064 PF13273.1 gi|298674861|ref|YP_003726611.1| - 3.8 7.6 9.2 73 3.5 6.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) MNHE PF01899.11 gi|298674862|ref|YP_003726612.1| - 7.3e-45 152.3 0.4 8.5e-45 152.1 0.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|298674863|ref|YP_003726613.1| - 2.4e-63 213.9 26.2 2.4e-63 213.9 18.2 3.1 2 2 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|298674863|ref|YP_003726613.1| - 7.2e-07 28.5 4.3 7.2e-07 28.5 3.0 2.8 3 0 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1_N PF00662.15 gi|298674863|ref|YP_003726613.1| - 0.0015 18.0 0.5 0.0015 18.0 0.4 4.4 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|298674864|ref|YP_003726614.1| - 4.2e-31 106.4 2.4 5e-31 106.1 1.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CbiQ PF02361.11 gi|298674864|ref|YP_003726614.1| - 0.46 10.0 2.8 0.53 9.8 2.0 1.1 1 0 0 1 1 1 0 Cobalt transport protein MnhB PF04039.8 gi|298674865|ref|YP_003726615.1| - 1.3e-27 96.3 14.4 1.4e-27 96.2 10.0 1.0 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|298674866|ref|YP_003726616.1| - 5.1e-67 225.9 18.0 5.1e-67 225.9 12.5 3.4 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|298674866|ref|YP_003726616.1| - 5.9e-19 67.8 10.1 5.9e-19 67.8 7.0 4.5 5 1 0 5 5 5 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|298674866|ref|YP_003726616.1| - 1.4e-08 34.1 0.4 1.4e-08 34.1 0.3 3.9 3 1 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HSP20 PF00011.16 gi|298674867|ref|YP_003726617.1| - 2.8e-07 30.3 0.8 6.4e-06 25.9 0.6 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|298674867|ref|YP_003726617.1| - 0.00027 21.4 0.1 0.00047 20.6 0.1 1.4 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|298674867|ref|YP_003726617.1| - 0.0046 16.6 0.6 0.0069 16.0 0.4 1.2 1 0 0 1 1 1 1 GvpH DUF2892 PF11127.3 gi|298674868|ref|YP_003726618.1| - 1.1e-13 50.8 0.4 1.2e-13 50.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3017 PF11222.3 gi|298674868|ref|YP_003726618.1| - 0.06 13.1 0.2 0.081 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3017) MFS_1 PF07690.11 gi|298674869|ref|YP_003726619.1| - 2.8e-50 171.0 70.4 5.6e-45 153.5 25.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|298674869|ref|YP_003726619.1| - 0.0012 17.3 6.5 0.0012 17.3 4.5 3.9 2 2 1 4 4 4 2 MFS/sugar transport protein PfkB PF00294.19 gi|298674870|ref|YP_003726620.1| - 6.4e-40 137.1 0.0 8.7e-40 136.7 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Methyltransf_11 PF08241.7 gi|298674871|ref|YP_003726621.1| - 1e-21 77.2 0.0 1.8e-21 76.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674871|ref|YP_003726621.1| - 1.2e-14 54.1 0.0 6.2e-14 51.8 0.0 1.9 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674871|ref|YP_003726621.1| - 1.3e-13 50.9 0.0 1.8e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298674871|ref|YP_003726621.1| - 6.2e-12 46.0 0.0 1.1e-11 45.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|298674871|ref|YP_003726621.1| - 1.3e-11 44.0 0.2 2.1e-11 43.4 0.0 1.3 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|298674871|ref|YP_003726621.1| - 1.8e-09 37.0 0.0 3.2e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|298674871|ref|YP_003726621.1| - 2.6e-08 34.2 0.0 5.8e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674871|ref|YP_003726621.1| - 1.7e-07 31.5 0.0 3.4e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|298674871|ref|YP_003726621.1| - 2e-06 26.4 0.0 3.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|298674871|ref|YP_003726621.1| - 2.1e-05 24.5 0.0 4.1e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|298674871|ref|YP_003726621.1| - 0.00018 21.2 0.0 0.0021 17.7 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase TehB PF03848.9 gi|298674871|ref|YP_003726621.1| - 0.00021 20.5 0.0 0.00037 19.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|298674871|ref|YP_003726621.1| - 0.00025 20.4 0.0 0.0005 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|298674871|ref|YP_003726621.1| - 0.00037 19.3 0.0 0.0014 17.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|298674871|ref|YP_003726621.1| - 0.00061 19.2 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_PK PF05891.7 gi|298674871|ref|YP_003726621.1| - 0.0012 18.2 0.0 0.0025 17.1 0.0 1.5 2 0 0 2 2 2 1 AdoMet dependent proline di-methyltransferase RrnaAD PF00398.15 gi|298674871|ref|YP_003726621.1| - 0.0082 15.1 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|298674871|ref|YP_003726621.1| - 0.024 14.3 0.0 0.049 13.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|298674871|ref|YP_003726621.1| - 0.045 13.2 0.0 0.086 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Orn_Arg_deC_N PF02784.11 gi|298674871|ref|YP_003726621.1| - 0.051 12.7 0.0 0.085 12.0 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Methyltransf_24 PF13578.1 gi|298674871|ref|YP_003726621.1| - 0.055 14.2 0.0 0.1 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|298674871|ref|YP_003726621.1| - 0.074 13.0 0.0 0.19 11.7 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase UPF0146 PF03686.8 gi|298674871|ref|YP_003726621.1| - 0.15 11.8 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_18 PF12847.2 gi|298674872|ref|YP_003726622.1| - 2.5e-15 57.0 0.0 5.4e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298674872|ref|YP_003726622.1| - 4.6e-11 42.9 0.0 9.7e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298674872|ref|YP_003726622.1| - 5.1e-11 42.5 0.1 7e-11 42.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298674872|ref|YP_003726622.1| - 1.8e-10 40.5 0.0 2.4e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298674872|ref|YP_003726622.1| - 6e-10 39.4 0.0 1.1e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298674872|ref|YP_003726622.1| - 7.7e-10 39.1 0.0 1.3e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298674872|ref|YP_003726622.1| - 4.1e-07 29.3 0.1 6.6e-07 28.6 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|298674872|ref|YP_003726622.1| - 0.00032 20.7 0.0 0.00059 19.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Bin3 PF06859.7 gi|298674872|ref|YP_003726622.1| - 0.0018 18.2 0.0 0.015 15.2 0.0 2.3 1 1 0 1 1 1 1 Bicoid-interacting protein 3 (Bin3) Methyltransf_15 PF09445.5 gi|298674872|ref|YP_003726622.1| - 0.0025 17.4 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|298674872|ref|YP_003726622.1| - 0.0029 16.7 0.0 0.0048 16.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|298674872|ref|YP_003726622.1| - 0.0043 16.4 0.0 0.0065 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|298674872|ref|YP_003726622.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF1414 PF07208.6 gi|298674872|ref|YP_003726622.1| - 0.027 14.1 0.1 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1414) CheR PF01739.13 gi|298674872|ref|YP_003726622.1| - 0.07 12.3 0.0 0.16 11.2 0.0 1.5 1 1 0 1 1 1 0 CheR methyltransferase, SAM binding domain AdoHcyase PF05221.12 gi|298674873|ref|YP_003726623.1| - 1.1e-132 440.9 0.1 1.3e-132 440.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|298674873|ref|YP_003726623.1| - 4.8e-78 260.6 2.2 7.1e-78 260.0 1.5 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|298674873|ref|YP_003726623.1| - 4e-06 26.1 0.1 7.3e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|298674873|ref|YP_003726623.1| - 0.0006 19.2 0.3 0.0011 18.3 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|298674873|ref|YP_003726623.1| - 0.00062 19.7 0.0 0.0019 18.1 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.12 gi|298674873|ref|YP_003726623.1| - 0.028 14.8 0.0 0.076 13.4 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF39 PF01837.11 gi|298674873|ref|YP_003726623.1| - 0.046 12.3 0.2 0.65 8.5 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF39 NAD_binding_7 PF13241.1 gi|298674873|ref|YP_003726623.1| - 0.047 13.9 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding ELFV_dehydrog PF00208.16 gi|298674873|ref|YP_003726623.1| - 0.054 13.0 1.4 0.15 11.6 1.0 1.9 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.13 gi|298674873|ref|YP_003726623.1| - 0.077 12.6 0.2 0.18 11.4 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain S-AdoMet_synt_C PF02773.11 gi|298674874|ref|YP_003726624.1| - 3e-61 205.1 0.7 4.5e-61 204.5 0.1 1.5 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.11 gi|298674874|ref|YP_003726624.1| - 4.6e-43 145.9 0.0 1e-42 144.8 0.0 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.15 gi|298674874|ref|YP_003726624.1| - 3.4e-33 113.8 0.9 5.8e-33 113.0 0.1 1.7 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain NAD_binding_7 PF13241.1 gi|298674875|ref|YP_003726625.1| - 7.2e-06 26.1 0.0 1.6e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|298674875|ref|YP_003726625.1| - 1.5e-05 24.8 0.0 2.8e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|298674875|ref|YP_003726625.1| - 6.5e-05 22.6 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|298674875|ref|YP_003726625.1| - 0.0007 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|298674875|ref|YP_003726625.1| - 0.012 15.9 0.0 0.027 14.8 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|298674875|ref|YP_003726625.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.16 gi|298674875|ref|YP_003726625.1| - 0.061 13.1 0.1 0.62 9.8 0.0 2.3 2 0 0 2 2 2 0 ThiF family Shikimate_DH PF01488.15 gi|298674875|ref|YP_003726625.1| - 0.077 13.1 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|298674875|ref|YP_003726625.1| - 0.088 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|298674875|ref|YP_003726625.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|298674875|ref|YP_003726625.1| - 0.12 11.2 0.0 0.3 9.9 0.0 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase ATP-grasp_4 PF13535.1 gi|298674876|ref|YP_003726626.1| - 6.5e-15 55.3 0.0 1.4e-14 54.2 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|298674876|ref|YP_003726626.1| - 1.8e-14 53.9 0.1 3e-14 53.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298674876|ref|YP_003726626.1| - 7.5e-07 28.1 0.0 4.2e-05 22.4 0.0 2.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|298674876|ref|YP_003726626.1| - 9.3e-06 25.1 0.4 2.7e-05 23.6 0.3 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus Pyr_redox PF00070.22 gi|298674876|ref|YP_003726626.1| - 0.0032 17.8 0.0 0.0091 16.3 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ATP-grasp PF02222.17 gi|298674876|ref|YP_003726626.1| - 0.005 16.2 0.0 0.0085 15.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|298674876|ref|YP_003726626.1| - 0.15 11.5 1.1 1.3 8.5 0.1 2.8 3 1 1 4 4 4 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Radical_SAM PF04055.16 gi|298674877|ref|YP_003726627.1| - 2.9e-13 50.3 0.1 6.6e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298674877|ref|YP_003726627.1| - 2.7e-07 30.7 0.2 6.6e-07 29.5 0.1 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain BATS PF06968.8 gi|298674877|ref|YP_003726627.1| - 1.8e-05 24.4 0.0 0.00014 21.5 0.0 2.3 1 1 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Fer4_14 PF13394.1 gi|298674877|ref|YP_003726627.1| - 0.00015 21.7 0.0 0.00038 20.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain His_biosynth PF00977.16 gi|298674877|ref|YP_003726627.1| - 0.0007 18.9 0.0 0.0015 17.8 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein CUE PF02845.11 gi|298674877|ref|YP_003726627.1| - 0.072 12.5 0.3 1.3 8.5 0.0 2.7 3 0 0 3 3 3 0 CUE domain Lactate_perm PF02652.9 gi|298674877|ref|YP_003726627.1| - 0.18 10.2 0.0 0.23 9.8 0.0 1.1 1 0 0 1 1 1 0 L-lactate permease tRNA-synt_1e PF01406.14 gi|298674878|ref|YP_003726628.1| - 7.2e-97 324.1 2.5 1.5e-96 323.0 1.7 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|298674878|ref|YP_003726628.1| - 6.8e-21 74.3 2.3 1.1e-10 40.7 0.0 2.8 2 1 1 3 3 3 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|298674878|ref|YP_003726628.1| - 6e-12 45.6 0.4 1.8e-11 44.1 0.3 1.8 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.17 gi|298674878|ref|YP_003726628.1| - 6.9e-08 30.9 0.1 0.0018 16.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|298674878|ref|YP_003726628.1| - 1.2e-06 27.5 0.1 0.013 14.1 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|298674878|ref|YP_003726628.1| - 7e-06 25.0 0.4 0.0092 14.8 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|298674878|ref|YP_003726628.1| - 0.0012 17.5 0.7 0.011 14.4 0.1 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain QRPTase_C PF01729.14 gi|298674879|ref|YP_003726629.1| - 1.2e-28 99.7 0.0 1.6e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase PF04095.11 gi|298674879|ref|YP_003726629.1| - 0.0031 16.8 0.0 0.0059 15.9 0.0 1.5 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family QRPTase_N PF02749.11 gi|298674879|ref|YP_003726629.1| - 0.0041 16.9 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|298674879|ref|YP_003726629.1| - 0.024 13.7 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|298674879|ref|YP_003726629.1| - 0.041 13.0 0.0 0.065 12.3 0.0 1.3 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|298674879|ref|YP_003726629.1| - 0.14 11.1 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Cation_efflux PF01545.16 gi|298674880|ref|YP_003726630.1| - 0.0089 15.1 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Cation efflux family PAS_3 PF08447.6 gi|298674881|ref|YP_003726631.1| - 8.1e-37 125.2 2.0 1.2e-18 66.9 0.2 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|298674881|ref|YP_003726631.1| - 3.9e-18 65.7 0.1 3.6e-08 33.7 0.1 2.3 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|298674881|ref|YP_003726631.1| - 1.8e-12 47.9 0.0 2.9e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|298674881|ref|YP_003726631.1| - 3.7e-09 36.3 0.0 0.0059 16.3 0.0 3.3 3 1 0 3 3 3 2 PAS fold GAF PF01590.21 gi|298674881|ref|YP_003726631.1| - 6.8e-08 32.7 0.0 9.5e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|298674881|ref|YP_003726631.1| - 1.2e-07 31.8 0.0 2e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|298674881|ref|YP_003726631.1| - 3.4e-05 23.8 0.0 0.24 11.4 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|298674881|ref|YP_003726631.1| - 4e-05 23.5 0.0 0.019 14.9 0.0 2.4 2 0 0 2 2 2 2 PAS domain URO-D PF01208.12 gi|298674882|ref|YP_003726632.1| - 6.3e-91 304.8 0.0 7.2e-91 304.6 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_2 PF01717.13 gi|298674882|ref|YP_003726632.1| - 0.049 12.6 0.0 0.068 12.1 0.0 1.3 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain Grp1_Fun34_YaaH PF01184.14 gi|298674883|ref|YP_003726633.1| - 6e-33 113.9 23.6 7.3e-33 113.6 16.3 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family MtaB PF12176.3 gi|298674884|ref|YP_003726634.1| - 3.9e-240 797.0 3.7 4.4e-240 796.8 2.6 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit BsuPI PF12690.2 gi|298674884|ref|YP_003726634.1| - 0.071 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Intracellular proteinase inhibitor B12-binding PF02310.14 gi|298674885|ref|YP_003726635.1| - 1.6e-18 66.6 0.1 2.7e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|298674885|ref|YP_003726635.1| - 2e-12 46.9 0.0 5.7e-12 45.4 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain Ocnus PF05005.10 gi|298674885|ref|YP_003726635.1| - 0.009 15.8 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Janus/Ocnus family (Ocnus) PAS_3 PF08447.6 gi|298674886|ref|YP_003726636.1| - 2.7e-53 178.0 1.8 7.5e-17 61.2 0.1 5.4 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|298674886|ref|YP_003726636.1| - 1.6e-43 147.2 9.1 1.6e-12 47.6 0.0 5.8 6 0 0 6 6 6 5 PAS domain PAS PF00989.19 gi|298674886|ref|YP_003726636.1| - 1e-35 121.9 0.1 2.1e-07 30.6 0.0 5.4 5 0 0 5 5 5 4 PAS fold GAF_2 PF13185.1 gi|298674886|ref|YP_003726636.1| - 4.1e-26 92.2 0.0 2e-14 54.3 0.0 2.7 3 0 0 3 3 3 2 GAF domain PAS_4 PF08448.5 gi|298674886|ref|YP_003726636.1| - 9.3e-20 70.7 0.0 0.0003 20.8 0.0 4.8 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|298674886|ref|YP_003726636.1| - 1.4e-17 62.7 0.0 5.6e-05 22.8 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.1 gi|298674886|ref|YP_003726636.1| - 5.8e-16 58.7 0.0 9.3e-10 38.6 0.0 2.9 3 0 0 3 3 3 2 GAF domain PAS_11 PF14598.1 gi|298674886|ref|YP_003726636.1| - 2.2e-07 30.8 0.1 0.3 11.0 0.0 4.6 5 0 0 5 5 5 2 PAS domain GAF PF01590.21 gi|298674886|ref|YP_003726636.1| - 1.1e-06 28.8 0.0 0.017 15.2 0.0 2.3 2 0 0 2 2 2 2 GAF domain cobW PF02492.14 gi|298674887|ref|YP_003726637.1| - 2.6e-37 128.0 0.1 5.3e-37 126.9 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|298674887|ref|YP_003726637.1| - 0.00011 21.9 0.3 0.00042 20.0 0.0 2.2 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|298674887|ref|YP_003726637.1| - 0.00026 20.4 0.9 0.0015 17.9 0.1 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|298674887|ref|YP_003726637.1| - 0.0016 17.9 0.4 0.008 15.6 0.1 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain DUF520 PF04461.8 gi|298674887|ref|YP_003726637.1| - 0.0037 17.1 0.5 2.6 7.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF520) KTI12 PF08433.5 gi|298674887|ref|YP_003726637.1| - 0.0068 15.6 0.0 0.018 14.2 0.0 1.7 1 0 0 1 1 1 1 Chromatin associated protein KTI12 ArgK PF03308.11 gi|298674887|ref|YP_003726637.1| - 0.025 13.3 0.3 0.21 10.3 0.1 2.1 2 0 0 2 2 2 0 ArgK protein ATP_bind_1 PF03029.12 gi|298674887|ref|YP_003726637.1| - 0.054 13.0 1.2 0.56 9.6 0.0 2.7 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|298674887|ref|YP_003726637.1| - 0.084 12.5 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.1 gi|298674887|ref|YP_003726637.1| - 0.13 12.5 1.1 0.27 11.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF4445 PF14574.1 gi|298674888|ref|YP_003726638.1| - 7.2e-99 330.8 1.7 1.2e-98 330.0 1.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_7 PF12838.2 gi|298674888|ref|YP_003726638.1| - 1.9e-06 28.1 3.2 4.5e-06 26.9 2.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674888|ref|YP_003726638.1| - 0.00033 20.8 4.4 0.00095 19.3 3.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298674888|ref|YP_003726638.1| - 0.0011 18.7 3.6 0.0028 17.4 2.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674888|ref|YP_003726638.1| - 0.0017 19.0 5.3 0.62 10.8 1.0 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|298674888|ref|YP_003726638.1| - 0.0019 17.6 5.1 0.1 12.2 1.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|298674888|ref|YP_003726638.1| - 0.0034 17.2 0.4 0.0074 16.1 0.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298674888|ref|YP_003726638.1| - 0.0042 16.9 5.3 0.01 15.6 0.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674888|ref|YP_003726638.1| - 0.0046 16.7 5.6 0.0064 16.2 1.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674888|ref|YP_003726638.1| - 0.014 15.2 1.8 0.014 15.2 1.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298674888|ref|YP_003726638.1| - 0.19 12.3 10.3 0.56 10.9 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298674888|ref|YP_003726638.1| - 0.29 11.5 2.7 7 7.1 1.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674888|ref|YP_003726638.1| - 0.9 10.0 8.4 0.055 13.8 1.9 1.9 2 0 0 2 2 2 0 4Fe-4S binding domain HisKA PF00512.20 gi|298674889|ref|YP_003726639.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain ER PF01133.12 gi|298674889|ref|YP_003726639.1| - 0.14 11.8 1.2 11 5.8 0.1 2.1 1 1 1 2 2 2 0 Enhancer of rudimentary PAP2 PF01569.16 gi|298674890|ref|YP_003726640.1| - 3.3e-21 75.2 7.0 3.3e-21 75.2 4.9 1.4 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|298674890|ref|YP_003726640.1| - 4.2e-05 23.1 1.4 4.2e-05 23.1 1.0 1.8 1 1 1 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|298674890|ref|YP_003726640.1| - 0.00048 20.3 0.8 0.00048 20.3 0.6 2.3 2 0 0 2 2 2 1 PAP2 superfamily C-terminal Cation_efflux PF01545.16 gi|298674890|ref|YP_003726640.1| - 0.45 9.5 4.4 0.56 9.2 3.0 1.2 1 0 0 1 1 1 0 Cation efflux family DUF1279 PF06916.8 gi|298674890|ref|YP_003726640.1| - 0.52 10.6 7.3 2.7 8.3 0.6 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1279) DUF3169 PF11368.3 gi|298674890|ref|YP_003726640.1| - 0.96 8.5 6.8 1.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) Pyrophosphatase PF00719.14 gi|298674891|ref|YP_003726641.1| - 4.2e-57 191.9 0.2 4.9e-57 191.7 0.1 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase OrfB_Zn_ribbon PF07282.6 gi|298674892|ref|YP_003726642.1| - 1.2e-25 88.9 1.8 5.4e-25 86.8 0.7 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298674892|ref|YP_003726642.1| - 8.2e-16 58.0 1.6 1.4e-15 57.3 1.1 1.3 1 0 0 1 1 1 1 Probable transposase DUF2578 PF10843.3 gi|298674892|ref|YP_003726642.1| - 0.018 14.7 0.5 0.036 13.7 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2578) DNA_RNApol_7kD PF03604.8 gi|298674892|ref|YP_003726642.1| - 0.043 13.2 6.5 0.15 11.5 4.5 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|298674892|ref|YP_003726642.1| - 0.12 12.2 3.3 0.22 11.3 2.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|298674892|ref|YP_003726642.1| - 0.17 12.2 5.1 0.4 11.1 3.5 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Zn_Tnp_IS1595 PF12760.2 gi|298674892|ref|YP_003726642.1| - 1.2 8.9 6.8 2.7 7.8 4.7 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298674892|ref|YP_003726642.1| - 1.2 8.8 4.3 24 4.7 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|298674892|ref|YP_003726642.1| - 1.3 8.8 4.0 3 7.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DnaJ PF00226.26 gi|298674893|ref|YP_003726643.1| - 1.6e-22 78.9 0.3 2.8e-22 78.2 0.2 1.4 1 0 0 1 1 1 1 DnaJ domain DDE_1 PF03184.14 gi|298674893|ref|YP_003726643.1| - 0.0041 16.2 1.3 0.74 8.9 0.0 2.1 2 0 0 2 2 2 2 DDE superfamily endonuclease Thioredoxin_8 PF13905.1 gi|298674893|ref|YP_003726643.1| - 0.011 15.8 2.2 3.1 7.9 0.1 2.2 2 0 0 2 2 2 0 Thioredoxin-like RPT PF13446.1 gi|298674893|ref|YP_003726643.1| - 0.039 13.3 0.0 0.087 12.2 0.0 1.6 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF912 PF06024.7 gi|298674893|ref|YP_003726643.1| - 0.14 12.2 2.0 1.8 8.6 1.4 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF2150 PF09920.4 gi|298674894|ref|YP_003726644.1| - 0.0054 16.3 0.1 0.062 12.8 0.0 2.3 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2150) Multi_Drug_Res PF00893.14 gi|298674895|ref|YP_003726645.1| - 1.5e-29 102.2 11.1 2e-29 101.9 7.7 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|298674895|ref|YP_003726645.1| - 0.00019 21.4 15.5 0.00026 21.0 10.8 1.3 1 1 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|298674895|ref|YP_003726645.1| - 0.00093 19.3 11.4 0.0012 19.0 7.9 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter DUF1576 PF07613.6 gi|298674895|ref|YP_003726645.1| - 0.085 12.3 6.7 0.087 12.3 3.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1576) TPT PF03151.11 gi|298674895|ref|YP_003726645.1| - 0.18 11.4 12.3 0.23 11.0 8.5 1.2 1 0 0 1 1 1 0 Triose-phosphate Transporter family Acyl_transf_3 PF01757.17 gi|298674895|ref|YP_003726645.1| - 0.82 8.4 11.3 1.6 7.4 7.8 1.5 1 1 0 1 1 1 0 Acyltransferase family DUF4293 PF14126.1 gi|298674895|ref|YP_003726645.1| - 4 7.3 9.2 4.9 7.0 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4293) DUF2178 PF09946.4 gi|298674896|ref|YP_003726646.1| - 1.5e-17 63.3 4.7 1.8e-17 63.1 3.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) IncA PF04156.9 gi|298674896|ref|YP_003726646.1| - 4.2e-05 23.2 5.0 0.00067 19.3 0.6 2.1 2 0 0 2 2 2 2 IncA protein 7TMR-DISM_7TM PF07695.6 gi|298674896|ref|YP_003726646.1| - 0.00037 20.2 1.1 0.00048 19.8 0.8 1.2 1 0 0 1 1 1 1 7TM diverse intracellular signalling DUF3796 PF12676.2 gi|298674896|ref|YP_003726646.1| - 0.001 19.3 0.2 0.001 19.3 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3796) Wzy_C PF04932.10 gi|298674896|ref|YP_003726646.1| - 0.022 14.5 0.4 0.022 14.5 0.3 1.9 1 1 1 2 2 2 0 O-Antigen ligase Rhomboid PF01694.17 gi|298674896|ref|YP_003726646.1| - 0.025 14.5 4.0 0.045 13.7 2.8 1.6 1 1 0 1 1 1 0 Rhomboid family AgrB PF04647.10 gi|298674896|ref|YP_003726646.1| - 0.081 11.9 1.6 0.14 11.2 1.1 1.4 1 1 0 1 1 1 0 Accessory gene regulator B UPF0104 PF03706.8 gi|298674896|ref|YP_003726646.1| - 0.21 10.8 6.8 0.66 9.1 4.7 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) FixQ PF05545.6 gi|298674896|ref|YP_003726646.1| - 0.46 10.1 4.5 4.8 6.9 0.3 2.6 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF4199 PF13858.1 gi|298674896|ref|YP_003726646.1| - 0.61 9.9 11.2 2.4 8.0 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) HTH_3 PF01381.17 gi|298674897|ref|YP_003726647.1| - 1.4e-18 66.5 0.0 1.5e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|298674897|ref|YP_003726647.1| - 1.1e-11 44.5 0.1 1.3e-11 44.3 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|298674897|ref|YP_003726647.1| - 2.8e-09 37.0 0.0 3.3e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|298674897|ref|YP_003726647.1| - 1e-05 25.6 0.0 1.2e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|298674897|ref|YP_003726647.1| - 0.00038 20.0 0.0 0.00062 19.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_25 PF13413.1 gi|298674897|ref|YP_003726647.1| - 0.00047 19.7 0.0 0.00057 19.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|298674897|ref|YP_003726647.1| - 0.0047 16.6 0.0 0.0074 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|298674897|ref|YP_003726647.1| - 0.0048 16.1 0.0 0.0075 15.5 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|298674897|ref|YP_003726647.1| - 0.0096 15.6 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|298674897|ref|YP_003726647.1| - 0.038 13.6 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.7 gi|298674897|ref|YP_003726647.1| - 0.073 12.6 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_38 PF13936.1 gi|298674897|ref|YP_003726647.1| - 0.078 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FMN_red PF03358.10 gi|298674898|ref|YP_003726648.1| - 3.6e-22 78.4 0.0 5.4e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|298674898|ref|YP_003726648.1| - 1.8e-12 47.2 0.0 2.4e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold DUF4224 PF13986.1 gi|298674900|ref|YP_003726650.1| - 0.15 11.6 0.0 0.36 10.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) DUF1628 PF07790.6 gi|298674900|ref|YP_003726650.1| - 0.23 12.2 0.2 0.23 12.2 0.2 3.3 5 0 0 5 5 5 0 Protein of unknown function (DUF1628) DUF3188 PF11384.3 gi|298674900|ref|YP_003726650.1| - 0.98 9.0 6.4 0.1 12.1 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) FMN_red PF03358.10 gi|298674901|ref|YP_003726651.1| - 7.8e-14 51.4 0.0 1.3e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|298674901|ref|YP_003726651.1| - 7.4e-08 32.1 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold OrfB_Zn_ribbon PF07282.6 gi|298674902|ref|YP_003726652.1| - 1.9e-25 88.3 0.4 6e-25 86.7 0.0 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298674902|ref|YP_003726652.1| - 1.3e-07 31.2 6.2 1.8e-07 30.7 4.3 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|298674902|ref|YP_003726652.1| - 0.00032 20.3 1.5 0.049 13.3 0.1 2.8 2 1 0 2 2 2 1 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|298674902|ref|YP_003726652.1| - 0.021 14.4 5.4 0.13 11.9 1.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|298674902|ref|YP_003726652.1| - 0.067 13.0 0.4 0.067 13.0 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|298674902|ref|YP_003726652.1| - 0.57 10.0 4.0 0.4 10.5 0.8 2.0 2 1 1 3 3 3 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|298674902|ref|YP_003726652.1| - 0.59 9.6 8.1 0.44 10.1 3.4 2.5 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298674902|ref|YP_003726652.1| - 1.3 8.6 4.5 1.3 8.7 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|298674902|ref|YP_003726652.1| - 1.7 8.2 7.2 0.5 9.8 1.8 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|298674902|ref|YP_003726652.1| - 2 8.1 4.8 1.6 8.5 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298674902|ref|YP_003726652.1| - 8 5.8 12.2 0.14 11.4 1.8 2.7 3 1 1 4 4 4 0 zinc-ribbon domain HTH_29 PF13551.1 gi|298674905|ref|YP_003726655.1| - 1.5e-17 63.7 0.0 2e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|298674905|ref|YP_003726655.1| - 1.6e-12 48.0 1.2 2.5e-12 47.4 0.3 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|298674905|ref|YP_003726655.1| - 1.5e-10 40.4 0.0 4.4e-10 38.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|298674905|ref|YP_003726655.1| - 9.6e-08 31.8 1.0 1.4e-06 28.1 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|298674905|ref|YP_003726655.1| - 1.3e-06 27.8 0.7 1.3e-05 24.6 0.1 2.6 3 0 0 3 3 3 1 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|298674905|ref|YP_003726655.1| - 0.0022 18.2 0.1 0.0033 17.7 0.0 1.3 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 Pox_VLTF3 PF04947.9 gi|298674905|ref|YP_003726655.1| - 0.036 13.5 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Ribosomal_S24e PF01282.14 gi|298674905|ref|YP_003726655.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S24e Orthopox_A43R PF06517.6 gi|298674905|ref|YP_003726655.1| - 0.14 11.7 0.5 0.24 10.9 0.3 1.4 1 0 0 1 1 1 0 Orthopoxvirus A43R protein DDE_3 PF13358.1 gi|298674906|ref|YP_003726656.1| - 1.3e-22 80.1 0.0 1.6e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|298674906|ref|YP_003726656.1| - 3.3e-06 27.2 0.0 6.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|298674906|ref|YP_003726656.1| - 1.7e-05 24.0 0.0 2.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 DDE superfamily endonuclease GSDH PF07995.6 gi|298674907|ref|YP_003726657.1| - 2.3e-37 128.8 0.4 7e-36 123.9 0.3 2.3 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Aldo_ket_red PF00248.16 gi|298674908|ref|YP_003726658.1| - 1e-64 218.1 0.0 1.1e-64 217.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Y_Y_Y PF07495.8 gi|298674909|ref|YP_003726659.1| - 0.35 10.6 0.1 0.35 10.6 0.1 2.7 3 1 0 3 3 3 0 Y_Y_Y domain DUF523 PF04463.7 gi|298674911|ref|YP_003726661.1| - 7.9e-40 135.9 0.0 1.7e-39 134.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF523) DUF1722 PF08349.6 gi|298674911|ref|YP_003726661.1| - 3.3e-13 49.5 2.1 6.3e-13 48.6 1.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1722) Fasciclin PF02469.17 gi|298674912|ref|YP_003726662.1| - 3.8e-79 262.9 1.7 3.9e-39 133.5 0.1 2.1 2 0 0 2 2 2 2 Fasciclin domain DUF4098 PF13345.1 gi|298674912|ref|YP_003726662.1| - 5.5e-05 23.0 10.2 0.0038 17.1 0.6 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4098) DUF211 PF02680.9 gi|298674912|ref|YP_003726662.1| - 0.0076 16.0 9.5 0.062 13.1 0.7 2.7 2 0 0 2 2 2 2 Uncharacterized ArCR, COG1888 DUF3590 PF12148.3 gi|298674912|ref|YP_003726662.1| - 0.016 14.8 0.2 4.1 7.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3590) SbcCD_C PF13558.1 gi|298674912|ref|YP_003726662.1| - 0.04 13.8 0.1 2.9 7.8 0.0 2.4 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF1054 PF06335.7 gi|298674912|ref|YP_003726662.1| - 0.06 12.9 0.0 2.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1054) TIG PF01833.19 gi|298674912|ref|YP_003726662.1| - 1.4 8.9 5.8 6.3 6.8 0.4 2.5 2 0 0 2 2 2 0 IPT/TIG domain DUF3816 PF12822.2 gi|298674913|ref|YP_003726663.1| - 0.26 11.1 7.7 0.28 11.0 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) DUF2953 PF11167.3 gi|298674913|ref|YP_003726663.1| - 1.7 8.6 4.4 10 6.1 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) YyzF PF14116.1 gi|298674914|ref|YP_003726664.1| - 0.0017 18.2 0.3 0.0029 17.5 0.2 1.4 1 0 0 1 1 1 1 YyzF-like protein Hydantoinase_B PF02538.9 gi|298674916|ref|YP_003726666.1| - 2.5e-207 689.2 3.5 2.5e-207 689.2 2.4 1.4 2 0 0 2 2 2 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|298674916|ref|YP_003726666.1| - 1.8e-111 371.9 0.0 3.6e-111 370.9 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|298674916|ref|YP_003726666.1| - 3.2e-64 215.6 0.1 1.2e-62 210.4 0.0 2.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region EpsG PF14897.1 gi|298674917|ref|YP_003726667.1| - 0.055 12.3 2.9 0.065 12.1 2.0 1.1 1 0 0 1 1 1 0 EpsG family DUF4064 PF13273.1 gi|298674917|ref|YP_003726667.1| - 0.69 10.0 7.3 0.16 12.1 0.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4064) DUF4367 PF14285.1 gi|298674918|ref|YP_003726668.1| - 4.3e-12 45.6 10.4 4.3e-12 45.6 7.2 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) LolA PF03548.10 gi|298674918|ref|YP_003726668.1| - 0.0016 18.0 4.3 0.023 14.2 0.4 2.4 1 1 1 2 2 2 2 Outer membrane lipoprotein carrier protein LolA BofA PF07441.6 gi|298674919|ref|YP_003726669.1| - 0.0014 18.5 22.6 0.0017 18.2 15.6 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA PAS_9 PF13426.1 gi|298674920|ref|YP_003726670.1| - 2.3e-31 108.2 6.3 2.6e-12 47.0 0.0 4.0 5 0 0 5 5 3 3 PAS domain HisKA_2 PF07568.7 gi|298674920|ref|YP_003726670.1| - 8.2e-30 102.4 4.7 8.2e-30 102.4 3.3 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|298674920|ref|YP_003726670.1| - 1.1e-18 67.0 0.4 2.7e-15 56.2 0.0 3.9 4 0 0 4 4 4 1 PAS fold PAS PF00989.19 gi|298674920|ref|YP_003726670.1| - 2.1e-16 59.7 0.1 1e-05 25.2 0.0 4.3 3 2 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|298674920|ref|YP_003726670.1| - 6.1e-16 58.4 0.0 1.3e-05 25.1 0.0 3.8 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|298674920|ref|YP_003726670.1| - 1.6e-12 47.1 0.1 2e-11 43.5 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|298674920|ref|YP_003726670.1| - 3.8e-12 45.6 0.0 3.2e-05 23.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain HWE_HK PF07536.9 gi|298674920|ref|YP_003726670.1| - 9.1e-08 32.4 0.1 2.6e-07 30.9 0.1 1.9 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298674920|ref|YP_003726670.1| - 6.7e-05 22.6 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|298674920|ref|YP_003726670.1| - 0.00034 20.2 0.1 0.00034 20.2 0.1 2.5 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SEO_N PF14576.1 gi|298674920|ref|YP_003726670.1| - 0.00034 19.9 1.3 0.0011 18.2 0.9 1.9 1 0 0 1 1 1 1 Sieve element occlusion N-terminus PAS_10 PF13596.1 gi|298674920|ref|YP_003726670.1| - 0.0025 18.0 3.9 0.021 15.1 0.0 3.6 3 2 0 3 3 3 1 PAS domain RE_ApaLI PF09499.5 gi|298674920|ref|YP_003726670.1| - 0.007 15.7 0.1 0.016 14.5 0.0 1.5 1 0 0 1 1 1 1 ApaLI-like restriction endonuclease PAS_7 PF12860.2 gi|298674920|ref|YP_003726670.1| - 0.012 15.6 3.0 7.3 6.6 0.0 4.0 3 2 0 3 3 3 0 PAS fold bZIP_1 PF00170.16 gi|298674921|ref|YP_003726671.1| - 0.0074 16.2 3.4 0.009 15.9 2.3 1.1 1 0 0 1 1 1 1 bZIP transcription factor Exonuc_VII_S PF02609.11 gi|298674921|ref|YP_003726671.1| - 0.02 14.6 0.9 0.023 14.4 0.6 1.1 1 0 0 1 1 1 0 Exonuclease VII small subunit Herpes_BLRF2 PF05812.7 gi|298674921|ref|YP_003726671.1| - 0.03 14.1 1.2 0.031 14.0 0.8 1.1 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein P4Ha_N PF08336.6 gi|298674921|ref|YP_003726671.1| - 0.077 12.8 0.8 0.082 12.7 0.5 1.0 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region RBD-FIP PF09457.5 gi|298674921|ref|YP_003726671.1| - 0.15 11.8 2.5 0.22 11.3 1.7 1.2 1 0 0 1 1 1 0 FIP domain FANCI_S1-cap PF14674.1 gi|298674921|ref|YP_003726671.1| - 0.16 12.0 0.6 5.8 7.0 0.0 2.0 1 1 1 2 2 2 0 FANCI solenoid 1 cap DivIC PF04977.10 gi|298674921|ref|YP_003726671.1| - 0.23 10.9 1.5 0.25 10.8 1.0 1.1 1 0 0 1 1 1 0 Septum formation initiator IncA PF04156.9 gi|298674921|ref|YP_003726671.1| - 0.28 10.7 1.2 0.29 10.7 0.9 1.0 1 0 0 1 1 1 0 IncA protein Sugarporin_N PF11471.3 gi|298674921|ref|YP_003726671.1| - 1.5 8.5 4.3 1.9 8.2 2.1 1.7 1 1 1 2 2 2 0 Maltoporin periplasmic N-terminal extension DUF1699 PF08004.6 gi|298674922|ref|YP_003726672.1| - 3.8e-55 184.9 1.0 4.2e-55 184.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Metalloenzyme PF01676.13 gi|298674922|ref|YP_003726672.1| - 0.034 13.5 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily Rep_fac_C PF08542.6 gi|298674922|ref|YP_003726672.1| - 0.04 13.8 0.1 0.054 13.4 0.1 1.4 1 1 0 1 1 1 0 Replication factor C C-terminal domain Sda PF08970.5 gi|298674922|ref|YP_003726672.1| - 0.12 11.8 0.1 0.28 10.6 0.1 1.7 1 0 0 1 1 1 0 Sporulation inhibitor A ThiF PF00899.16 gi|298674923|ref|YP_003726673.1| - 1.9e-43 147.5 0.1 2.8e-43 147.0 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|298674923|ref|YP_003726673.1| - 2e-18 65.7 0.1 3.4e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|298674923|ref|YP_003726673.1| - 0.0043 17.1 0.1 0.0087 16.1 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|298674923|ref|YP_003726673.1| - 0.026 14.1 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|298674923|ref|YP_003726673.1| - 0.057 13.1 0.1 0.093 12.4 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|298674923|ref|YP_003726673.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trypsin_2 PF13365.1 gi|298674924|ref|YP_003726674.1| - 4.7e-22 78.2 0.1 8e-22 77.4 0.1 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|298674924|ref|YP_003726674.1| - 1.4e-18 66.5 0.1 3.8e-18 65.1 0.1 1.8 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|298674924|ref|YP_003726674.1| - 1.6e-12 47.4 0.0 4.1e-12 46.1 0.0 1.7 1 1 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|298674924|ref|YP_003726674.1| - 9.6e-06 25.6 0.6 0.0027 17.8 0.1 3.0 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) GRASP55_65 PF04495.9 gi|298674924|ref|YP_003726674.1| - 5.4e-05 23.1 0.5 0.00051 20.0 0.0 2.6 2 1 0 2 2 2 1 GRASP55/65 PDZ-like domain DUF316 PF03761.10 gi|298674924|ref|YP_003726674.1| - 0.0096 15.2 0.1 0.023 14.0 0.1 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF316) CPSF_A PF03178.10 gi|298674924|ref|YP_003726674.1| - 0.023 13.7 0.1 0.047 12.7 0.0 1.5 2 0 0 2 2 2 0 CPSF A subunit region Peptidase_S32 PF05579.8 gi|298674924|ref|YP_003726674.1| - 0.042 12.8 0.2 3.3 6.5 0.0 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 DUF4094 PF13334.1 gi|298674924|ref|YP_003726674.1| - 0.06 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) E_Pc_C PF06752.7 gi|298674924|ref|YP_003726674.1| - 0.09 12.2 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Enhancer of Polycomb C-terminus Thioredoxin_3 PF13192.1 gi|298674925|ref|YP_003726675.1| - 1.6e-22 79.0 2.0 1.8e-22 78.9 1.4 1.0 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.9 gi|298674925|ref|YP_003726675.1| - 0.0018 18.5 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) T2SE PF00437.15 gi|298674925|ref|YP_003726675.1| - 0.0035 16.2 0.0 0.0038 16.1 0.0 1.0 1 0 0 1 1 1 1 Type II/IV secretion system protein Glutaredoxin PF00462.19 gi|298674925|ref|YP_003726675.1| - 0.0043 17.0 0.1 0.0081 16.1 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin Thioredoxin_2 PF13098.1 gi|298674925|ref|YP_003726675.1| - 0.011 15.9 0.1 0.039 14.1 0.0 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.1 gi|298674925|ref|YP_003726675.1| - 0.012 15.5 0.2 1.2 9.0 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Cas_Csa5 PF09702.5 gi|298674925|ref|YP_003726675.1| - 0.04 14.0 0.2 0.051 13.6 0.2 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Csa5) BON PF04972.12 gi|298674925|ref|YP_003726675.1| - 0.049 13.3 0.0 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 BON domain ArsD PF06953.6 gi|298674925|ref|YP_003726675.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD PTS_IIB PF02302.12 gi|298674925|ref|YP_003726675.1| - 0.11 12.9 0.3 0.12 12.8 0.2 1.1 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit Fer4_5 PF12801.2 gi|298674926|ref|YP_003726676.1| - 1.3e-12 47.3 9.0 9.5e-11 41.3 0.6 4.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298674926|ref|YP_003726676.1| - 4.8e-09 36.4 11.8 0.0002 21.6 1.9 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674926|ref|YP_003726676.1| - 2.5e-08 34.0 16.6 1.2e-06 28.7 10.9 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298674926|ref|YP_003726676.1| - 9.1e-08 31.3 24.6 4.8e-05 22.7 3.8 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674926|ref|YP_003726676.1| - 2.8e-07 30.2 20.9 0.00029 20.5 3.3 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674926|ref|YP_003726676.1| - 4.2e-07 30.5 10.3 0.002 18.8 2.2 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|298674926|ref|YP_003726676.1| - 8.6e-07 28.8 13.3 0.0019 18.1 2.8 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674926|ref|YP_003726676.1| - 5.1e-06 26.8 19.9 6.3e-05 23.3 2.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298674926|ref|YP_003726676.1| - 5.4e-06 26.1 16.9 0.00097 18.9 2.2 2.7 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674926|ref|YP_003726676.1| - 1.6e-05 24.5 20.9 0.00059 19.6 2.4 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674926|ref|YP_003726676.1| - 7.9e-05 22.3 23.7 0.00033 20.3 3.5 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298674926|ref|YP_003726676.1| - 0.00021 21.5 19.3 0.018 15.3 4.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674926|ref|YP_003726676.1| - 0.00027 21.0 18.1 0.018 15.3 1.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674926|ref|YP_003726676.1| - 0.015 15.8 13.1 0.02 15.4 1.3 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298674926|ref|YP_003726676.1| - 0.019 15.3 2.2 0.019 15.3 1.6 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298674926|ref|YP_003726676.1| - 0.066 13.8 5.6 0.066 13.8 3.9 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain Flavi_NS4A PF01350.12 gi|298674926|ref|YP_003726676.1| - 1.1 8.8 7.2 0.38 10.2 1.2 2.1 2 0 0 2 2 2 0 Flavivirus non-structural protein NS4A TrmB PF01978.14 gi|298674927|ref|YP_003726677.1| - 6.9e-06 25.6 0.1 9.8e-06 25.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|298674927|ref|YP_003726677.1| - 1.8e-05 24.3 0.0 2.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|298674927|ref|YP_003726677.1| - 6.2e-05 22.8 0.3 0.00014 21.6 0.0 1.7 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|298674927|ref|YP_003726677.1| - 0.0017 17.9 0.1 0.0031 17.1 0.0 1.5 1 1 0 1 1 1 1 HTH domain MarR PF01047.17 gi|298674927|ref|YP_003726677.1| - 0.0032 17.1 0.2 0.0069 16.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|298674927|ref|YP_003726677.1| - 0.0042 16.4 0.1 0.0066 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|298674927|ref|YP_003726677.1| - 0.0052 16.2 2.5 0.0068 15.8 1.7 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.11 gi|298674927|ref|YP_003726677.1| - 0.012 15.7 0.2 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor Rio2_N PF09202.6 gi|298674927|ref|YP_003726677.1| - 0.021 14.8 0.1 0.03 14.3 0.1 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Trans_reg_C PF00486.23 gi|298674927|ref|YP_003726677.1| - 0.022 14.6 0.2 0.067 13.1 0.1 2.0 1 1 0 2 2 2 0 Transcriptional regulatory protein, C terminal Rrf2 PF02082.15 gi|298674927|ref|YP_003726677.1| - 0.043 13.9 0.0 0.069 13.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|298674927|ref|YP_003726677.1| - 0.044 13.5 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RepL PF05732.6 gi|298674927|ref|YP_003726677.1| - 0.048 12.8 0.1 0.069 12.3 0.1 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.5 gi|298674927|ref|YP_003726677.1| - 0.061 12.9 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.16 gi|298674927|ref|YP_003726677.1| - 0.082 12.3 0.1 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Dimerisation PF08100.6 gi|298674927|ref|YP_003726677.1| - 0.096 12.5 0.0 0.27 11.0 0.0 1.7 1 1 0 1 1 1 0 Dimerisation domain Fungal_trans PF04082.13 gi|298674927|ref|YP_003726677.1| - 0.13 11.1 0.2 0.15 10.8 0.2 1.0 1 0 0 1 1 1 0 Fungal specific transcription factor domain HTH_23 PF13384.1 gi|298674927|ref|YP_003726677.1| - 0.17 11.5 1.2 0.45 10.2 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain MFS_1 PF07690.11 gi|298674928|ref|YP_003726678.1| - 2.4e-44 151.5 37.9 2.4e-44 151.5 26.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|298674928|ref|YP_003726678.1| - 1.5e-11 43.1 15.6 2.1e-11 42.6 10.8 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector PAP2 PF01569.16 gi|298674929|ref|YP_003726679.1| - 6.3e-10 38.8 7.0 6.3e-10 38.8 4.9 2.8 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|298674929|ref|YP_003726679.1| - 4.2e-05 23.1 8.3 4.2e-05 23.1 5.8 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|298674929|ref|YP_003726679.1| - 0.0052 17.0 4.0 0.0052 17.0 2.7 3.3 3 0 0 3 3 3 1 PAP2 superfamily C-terminal DUF1980 PF09323.5 gi|298674929|ref|YP_003726679.1| - 0.014 15.1 2.4 0.014 15.1 1.7 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1980) NVEALA PF14055.1 gi|298674929|ref|YP_003726679.1| - 0.11 12.2 3.5 5.3 6.8 0.1 3.2 3 0 0 3 3 3 0 NVEALA protein FixQ PF05545.6 gi|298674929|ref|YP_003726679.1| - 0.67 9.6 0.0 0.67 9.6 0.0 4.0 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ TctB PF07331.6 gi|298674929|ref|YP_003726679.1| - 3.3 7.3 18.7 0.8 9.3 0.9 2.6 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family Radical_SAM PF04055.16 gi|298674930|ref|YP_003726680.1| - 9.6e-08 32.3 0.0 2.1e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|298674930|ref|YP_003726680.1| - 0.047 13.5 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain GSIII_N PF12437.3 gi|298674930|ref|YP_003726680.1| - 0.083 12.2 0.0 0.21 10.9 0.0 1.6 2 0 0 2 2 2 0 Glutamine synthetase type III N terminal Peptidase_M54 PF07998.6 gi|298674931|ref|YP_003726681.1| - 5e-27 94.9 0.1 5.8e-27 94.7 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|298674931|ref|YP_003726681.1| - 0.00049 19.8 0.1 0.001 18.8 0.1 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|298674931|ref|YP_003726681.1| - 0.005 16.9 0.0 0.0053 16.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF1025 PF06262.6 gi|298674931|ref|YP_003726681.1| - 0.0075 16.0 0.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 1 Possibl zinc metallo-peptidase Peptidase_M43 PF05572.8 gi|298674931|ref|YP_003726681.1| - 0.022 14.3 0.1 0.035 13.7 0.1 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M66 PF10462.4 gi|298674931|ref|YP_003726681.1| - 0.041 12.7 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_4 PF13583.1 gi|298674931|ref|YP_003726681.1| - 0.044 13.2 0.3 0.049 13.1 0.2 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|298674931|ref|YP_003726681.1| - 0.061 11.7 0.6 0.086 11.2 0.4 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_5 PF13688.1 gi|298674931|ref|YP_003726681.1| - 0.09 12.6 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|298674931|ref|YP_003726681.1| - 0.11 13.0 1.2 0.12 12.8 0.9 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF1641 PF07849.6 gi|298674932|ref|YP_003726682.1| - 1.2e-13 50.4 4.8 1.2e-13 50.3 1.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.9 gi|298674933|ref|YP_003726683.1| - 1.3e-14 54.6 0.0 3.4e-14 53.1 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|298674933|ref|YP_003726683.1| - 0.0036 17.0 0.0 0.71 9.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|298674933|ref|YP_003726683.1| - 0.0054 17.1 0.0 5.9 7.3 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|298674933|ref|YP_003726683.1| - 0.0071 15.2 0.1 0.045 12.6 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|298674933|ref|YP_003726683.1| - 0.028 13.4 0.0 0.043 12.7 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_8 PF13450.1 gi|298674933|ref|YP_003726683.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|298674933|ref|YP_003726683.1| - 0.11 12.5 0.0 3.9 7.4 0.0 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|298674933|ref|YP_003726683.1| - 0.15 11.9 0.1 0.36 10.6 0.0 1.7 1 1 0 1 1 1 0 ThiF family SecA_SW PF07516.8 gi|298674934|ref|YP_003726684.1| - 0.0082 15.9 3.1 0.0092 15.7 2.2 1.1 1 0 0 1 1 1 1 SecA Wing and Scaffold domain MAP65_ASE1 PF03999.7 gi|298674934|ref|YP_003726684.1| - 0.011 14.3 1.5 0.013 14.1 1.0 1.0 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) HSBP1 PF06825.7 gi|298674934|ref|YP_003726684.1| - 0.048 13.2 2.7 2.8 7.6 1.1 2.7 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Cas_Csx8 PF09657.5 gi|298674934|ref|YP_003726684.1| - 0.049 12.3 9.0 0.053 12.2 6.2 1.0 1 0 0 1 1 1 0 CRISPR-associated protein Csx8 (Cas_Csx8) DUF2795 PF11387.3 gi|298674934|ref|YP_003726684.1| - 0.098 12.5 0.8 0.29 11.0 0.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) ORF6C PF10552.4 gi|298674934|ref|YP_003726684.1| - 0.17 11.5 3.2 0.72 9.5 2.2 2.3 1 1 0 1 1 1 0 ORF6C domain Pup PF05639.6 gi|298674934|ref|YP_003726684.1| - 1 9.8 6.2 4.1 7.9 0.3 2.5 2 0 0 2 2 2 0 Pup-like protein eRF1_2 PF03464.10 gi|298674935|ref|YP_003726685.1| - 4.8e-20 72.2 0.0 1.5e-19 70.6 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|298674935|ref|YP_003726685.1| - 2.8e-09 37.2 0.0 7.5e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 3 Host_attach PF10116.4 gi|298674935|ref|YP_003726685.1| - 0.033 14.4 0.0 0.058 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein required for attachment to host cells OrfB_IS605 PF01385.14 gi|298674935|ref|YP_003726685.1| - 0.067 12.5 0.8 0.14 11.5 0.1 1.9 2 0 0 2 2 2 0 Probable transposase zf-Di19 PF05605.7 gi|298674935|ref|YP_003726685.1| - 0.13 12.4 0.2 0.28 11.3 0.1 1.5 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_4 PF14447.1 gi|298674935|ref|YP_003726685.1| - 0.16 11.5 0.6 0.29 10.7 0.4 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 Aminotran_1_2 PF00155.16 gi|298674936|ref|YP_003726686.1| - 3.1e-47 161.2 0.0 4.5e-47 160.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II zf-like PF04071.7 gi|298674936|ref|YP_003726686.1| - 5.1e-31 106.2 6.9 1.2e-30 104.9 4.8 1.6 1 0 0 1 1 1 1 Cysteine-rich small domain Aminotran_5 PF00266.14 gi|298674936|ref|YP_003726686.1| - 0.0052 15.5 0.0 0.81 8.3 0.0 3.3 3 1 1 4 4 4 1 Aminotransferase class-V MFS_1 PF07690.11 gi|298674937|ref|YP_003726687.1| - 1.8e-47 161.8 47.1 1.8e-47 161.8 32.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|298674937|ref|YP_003726687.1| - 1.1e-15 56.8 22.4 1.5e-15 56.3 15.5 1.2 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|298674937|ref|YP_003726687.1| - 3.3e-05 22.6 9.7 3.3e-05 22.6 6.7 2.9 1 1 1 3 3 3 2 Sugar (and other) transporter zf-LITAF-like PF10601.4 gi|298674937|ref|YP_003726687.1| - 8.5 6.3 9.7 6.9 6.6 0.1 3.7 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain OrfB_IS605 PF01385.14 gi|298674938|ref|YP_003726688.1| - 9.2e-44 149.5 6.3 9.2e-44 149.5 4.4 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674938|ref|YP_003726688.1| - 7e-23 80.0 0.3 1.4e-22 79.1 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298674938|ref|YP_003726688.1| - 1.2e-20 72.5 1.7 2.8e-20 71.3 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_GP20 PF06810.6 gi|298674938|ref|YP_003726688.1| - 0.86 9.0 10.6 0.11 11.9 1.4 2.6 3 0 0 3 3 3 0 Phage minor structural protein GP20 M_domain PF12938.2 gi|298674938|ref|YP_003726688.1| - 0.92 9.2 5.9 0.23 11.2 1.7 1.6 2 0 0 2 2 2 0 M domain of GW182 Rubredoxin PF00301.15 gi|298674938|ref|YP_003726688.1| - 1.1 9.2 9.6 11 6.0 6.7 2.4 1 1 0 1 1 1 0 Rubredoxin Occludin_ELL PF07303.8 gi|298674938|ref|YP_003726688.1| - 1.1 10.0 8.1 0.42 11.3 2.3 2.3 2 0 0 2 2 2 0 Occludin homology domain DUF98 PF01947.11 gi|298674939|ref|YP_003726689.1| - 7.4e-24 84.1 0.0 9.2e-24 83.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF98) Chor_lyase PF04345.8 gi|298674939|ref|YP_003726689.1| - 0.0015 17.9 0.0 0.0018 17.7 0.0 1.1 1 0 0 1 1 1 1 Chorismate lyase UTRA PF07702.8 gi|298674939|ref|YP_003726689.1| - 0.005 16.4 0.0 0.0066 16.0 0.0 1.2 1 0 0 1 1 1 1 UTRA domain Flavodoxin_1 PF00258.20 gi|298674941|ref|YP_003726691.1| - 1.2e-13 51.2 0.0 1.6e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|298674941|ref|YP_003726691.1| - 6.2e-10 39.2 0.0 7.7e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|298674941|ref|YP_003726691.1| - 2.9e-06 26.8 0.4 0.00023 20.6 0.3 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|298674941|ref|YP_003726691.1| - 4.9e-06 25.9 0.2 0.0034 16.7 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_3 PF12641.2 gi|298674941|ref|YP_003726691.1| - 5.9e-06 25.7 0.0 9.1e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Peptidase_U40 PF10464.4 gi|298674941|ref|YP_003726691.1| - 0.0064 15.9 0.0 0.0081 15.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase U40 Flavodoxin_2 PF02525.12 gi|298674941|ref|YP_003726691.1| - 0.068 12.6 0.0 0.24 10.9 0.0 2.0 1 1 0 1 1 1 0 Flavodoxin-like fold PTS_IIB PF02302.12 gi|298674941|ref|YP_003726691.1| - 0.11 12.9 0.2 0.54 10.7 0.1 1.9 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit HisKA_2 PF07568.7 gi|298674942|ref|YP_003726692.1| - 1.3e-31 108.2 0.8 1.3e-31 108.2 0.5 2.3 2 0 0 2 2 2 1 Histidine kinase Cache_1 PF02743.13 gi|298674942|ref|YP_003726692.1| - 7e-14 51.1 0.3 3.6e-13 48.8 0.1 2.4 2 0 0 2 2 2 1 Cache domain HATPase_c PF02518.21 gi|298674942|ref|YP_003726692.1| - 1.3e-11 44.1 1.5 2.3e-11 43.4 0.2 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|298674942|ref|YP_003726692.1| - 3.1e-06 27.5 0.1 8.8e-06 26.0 0.0 1.8 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298674942|ref|YP_003726692.1| - 0.00029 20.6 0.0 0.00063 19.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.20 gi|298674942|ref|YP_003726692.1| - 0.00035 20.6 4.1 0.49 10.6 0.1 3.4 2 1 1 3 3 3 2 HAMP domain TarH PF02203.10 gi|298674942|ref|YP_003726692.1| - 0.00086 19.1 0.4 0.002 17.9 0.3 1.6 1 0 0 1 1 1 1 Tar ligand binding domain homologue HATPase_c_3 PF13589.1 gi|298674942|ref|YP_003726692.1| - 0.0039 16.8 1.0 0.0039 16.8 0.7 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|298674942|ref|YP_003726692.1| - 0.011 15.9 0.2 0.11 12.7 0.0 2.8 2 1 1 3 3 3 0 PAS domain Phage_coat PF09063.5 gi|298674942|ref|YP_003726692.1| - 0.053 13.3 0.0 0.43 10.3 0.0 2.3 1 1 0 1 1 1 0 Phage PP7 coat protein SieB PF14163.1 gi|298674942|ref|YP_003726692.1| - 0.081 12.4 0.9 2 7.9 0.1 2.6 2 0 0 2 2 2 0 Superinfection exclusion protein B Cache_2 PF08269.6 gi|298674942|ref|YP_003726692.1| - 0.1 12.6 3.2 0.6 10.1 0.0 3.0 3 0 0 3 3 3 0 Cache domain Response_reg PF00072.19 gi|298674943|ref|YP_003726693.1| - 6.7e-20 71.1 0.2 7.8e-20 70.9 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TrkA_N PF02254.13 gi|298674943|ref|YP_003726693.1| - 0.025 14.5 0.5 0.067 13.1 0.4 1.6 1 1 1 2 2 2 0 TrkA-N domain TrbH PF07283.6 gi|298674943|ref|YP_003726693.1| - 0.1 12.4 0.0 0.23 11.3 0.0 1.5 1 1 0 1 1 1 0 Conjugal transfer protein TrbH HisKA_2 PF07568.7 gi|298674944|ref|YP_003726694.1| - 3e-32 110.3 3.3 3e-32 110.3 2.3 2.1 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.1 gi|298674944|ref|YP_003726694.1| - 5.2e-24 84.6 0.8 2.2e-14 53.7 0.1 2.4 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|298674944|ref|YP_003726694.1| - 3e-23 81.7 0.7 1.6e-18 66.5 0.4 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|298674944|ref|YP_003726694.1| - 4.7e-15 55.5 0.0 4.7e-09 36.2 0.0 2.2 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|298674944|ref|YP_003726694.1| - 1.6e-14 53.6 0.1 2.7e-09 36.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|298674944|ref|YP_003726694.1| - 1.4e-10 40.5 0.2 6.4e-10 38.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.21 gi|298674944|ref|YP_003726694.1| - 1.3e-09 37.7 0.0 2.7e-09 36.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|298674944|ref|YP_003726694.1| - 3.9e-07 30.4 0.5 9.1e-07 29.2 0.4 1.6 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.1 gi|298674944|ref|YP_003726694.1| - 4.9e-05 23.2 0.4 0.52 10.2 0.0 2.8 2 1 1 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|298674944|ref|YP_003726694.1| - 0.00039 20.1 0.0 0.00072 19.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|298674944|ref|YP_003726694.1| - 0.0012 18.5 0.0 0.0035 16.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Stomoxyn PF11585.3 gi|298674944|ref|YP_003726694.1| - 0.072 12.9 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Insect antimicrobial peptide, stomoxyn Response_reg PF00072.19 gi|298674945|ref|YP_003726695.1| - 1.3e-22 79.9 0.1 1.4e-22 79.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF3986 PF13143.1 gi|298674945|ref|YP_003726695.1| - 0.019 15.4 0.0 0.03 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3986) Enolase_C PF00113.17 gi|298674946|ref|YP_003726696.1| - 3.3e-114 380.8 0.2 4.4e-114 380.4 0.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|298674946|ref|YP_003726696.1| - 4.7e-58 194.8 0.1 7.8e-58 194.1 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|298674946|ref|YP_003726696.1| - 0.017 14.0 0.0 0.048 12.5 0.0 1.7 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|298674946|ref|YP_003726696.1| - 0.017 15.6 0.0 0.04 14.4 0.0 1.7 1 1 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|298674946|ref|YP_003726696.1| - 0.035 14.0 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Enolase C-terminal domain-like DJ-1_PfpI PF01965.19 gi|298674947|ref|YP_003726697.1| - 1.1e-35 122.2 0.0 1.3e-35 122.0 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|298674947|ref|YP_003726697.1| - 1.6e-17 63.2 0.0 1.9e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|298674947|ref|YP_003726697.1| - 0.0016 17.9 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|298674947|ref|YP_003726697.1| - 0.0045 16.6 0.0 0.0066 16.0 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain R-HINP1I PF11463.3 gi|298674947|ref|YP_003726697.1| - 0.022 14.1 0.0 0.03 13.7 0.0 1.1 1 0 0 1 1 1 0 R.HinP1I restriction endonuclease Peptidase_C26 PF07722.8 gi|298674947|ref|YP_003726697.1| - 0.045 13.1 0.0 0.19 11.1 0.0 1.9 1 1 1 2 2 2 0 Peptidase C26 GATase_5 PF13507.1 gi|298674947|ref|YP_003726697.1| - 0.086 11.7 0.0 0.099 11.5 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF296 PF03479.10 gi|298674948|ref|YP_003726698.1| - 5.2e-16 58.3 0.0 5.9e-16 58.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) SLT_beta PF02258.11 gi|298674948|ref|YP_003726698.1| - 0.16 11.7 0.2 0.59 9.9 0.0 1.9 2 0 0 2 2 2 0 Shiga-like toxin beta subunit AA_permease_2 PF13520.1 gi|298674949|ref|YP_003726699.1| - 2e-44 151.8 60.0 2.9e-44 151.3 41.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|298674949|ref|YP_003726699.1| - 4.2e-31 107.8 58.2 8.7e-31 106.7 40.4 1.5 1 1 0 1 1 1 1 Amino acid permease Tubulin PF00091.20 gi|298674950|ref|YP_003726700.1| - 1.1e-30 107.1 0.1 1.9e-30 106.2 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|298674950|ref|YP_003726700.1| - 0.016 14.1 0.2 0.081 11.8 0.0 2.2 1 1 0 1 1 1 0 Tubulin like CPSase_L_chain PF00289.17 gi|298674950|ref|YP_003726700.1| - 0.02 15.0 0.1 0.95 9.5 0.0 2.6 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DUF11 PF01345.13 gi|298674951|ref|YP_003726701.1| - 3.4e-11 43.0 1.4 0.0002 21.3 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|298674951|ref|YP_003726701.1| - 1.1e-10 40.9 3.1 1.6e-06 27.3 0.3 2.3 1 1 1 2 2 2 2 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|298674951|ref|YP_003726701.1| - 6.2e-09 35.8 6.2 8.3e-05 22.5 0.7 2.7 2 0 0 2 2 2 2 CARDB NPCBM_assoc PF10633.4 gi|298674951|ref|YP_003726701.1| - 5.6e-05 23.1 0.0 0.0047 16.9 0.0 2.9 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2393 PF09624.5 gi|298674951|ref|YP_003726701.1| - 0.00012 21.5 7.6 0.1 12.1 1.8 2.7 2 1 1 3 3 3 2 Protein of unknown function (DUF2393) DUF974 PF06159.8 gi|298674951|ref|YP_003726701.1| - 0.024 14.0 0.1 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF974) YtkA PF13115.1 gi|298674951|ref|YP_003726701.1| - 3.9 7.8 5.7 61 4.0 0.7 3.8 1 1 1 2 2 2 0 YtkA-like QRPTase_C PF01729.14 gi|298674952|ref|YP_003726702.1| - 4e-57 192.4 1.9 4.9e-57 192.1 1.3 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|298674952|ref|YP_003726702.1| - 6.3e-19 67.5 0.0 1.2e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|298674952|ref|YP_003726702.1| - 0.0011 18.1 0.1 0.0028 16.8 0.0 1.6 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|298674952|ref|YP_003726702.1| - 0.0058 15.7 0.3 0.0098 15.0 0.2 1.4 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI Radical_SAM PF04055.16 gi|298674952|ref|YP_003726702.1| - 0.059 13.5 0.3 0.099 12.8 0.2 1.5 1 1 0 1 1 1 0 Radical SAM superfamily DUF108 PF01958.13 gi|298674953|ref|YP_003726703.1| - 3.5e-36 123.2 1.2 6.7e-36 122.4 0.9 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|298674953|ref|YP_003726703.1| - 4.7e-26 91.4 0.2 7.6e-26 90.8 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|298674953|ref|YP_003726703.1| - 1.8e-08 34.2 0.3 3.6e-08 33.3 0.2 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|298674953|ref|YP_003726703.1| - 6.4e-07 29.9 0.0 1.2e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|298674953|ref|YP_003726703.1| - 3.3e-06 27.3 0.4 6.6e-06 26.4 0.2 1.7 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|298674953|ref|YP_003726703.1| - 0.00077 19.8 0.1 0.0021 18.4 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|298674953|ref|YP_003726703.1| - 0.00089 18.4 0.0 0.0015 17.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|298674953|ref|YP_003726703.1| - 0.004 16.1 0.4 0.0056 15.7 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|298674953|ref|YP_003726703.1| - 0.0047 17.0 0.1 0.0079 16.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|298674953|ref|YP_003726703.1| - 0.0063 16.3 0.2 0.011 15.5 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|298674953|ref|YP_003726703.1| - 0.012 15.5 0.5 0.029 14.3 0.1 1.9 2 1 0 2 2 2 0 TrkA-N domain CPSase_L_chain PF00289.17 gi|298674953|ref|YP_003726703.1| - 0.095 12.8 0.2 1.2 9.2 0.2 2.6 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NadA PF02445.11 gi|298674954|ref|YP_003726704.1| - 3e-128 426.7 5.4 3.4e-128 426.5 3.7 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein eIF3_N PF09440.5 gi|298674954|ref|YP_003726704.1| - 0.096 12.8 2.4 5.6 7.1 0.0 3.0 3 0 0 3 3 3 0 eIF3 subunit 6 N terminal domain UPF0147 PF03685.8 gi|298674954|ref|YP_003726704.1| - 4.1 7.3 5.7 1.1 9.1 0.2 2.6 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0147) UbiA PF01040.13 gi|298674955|ref|YP_003726705.1| - 2.7e-39 134.9 22.8 4.4e-39 134.2 15.8 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family YqzM PF14141.1 gi|298674955|ref|YP_003726705.1| - 0.064 13.0 0.2 0.064 13.0 0.2 4.7 6 0 0 6 6 6 0 YqzM-like protein AdoMet_Synthase PF01941.14 gi|298674956|ref|YP_003726706.1| - 2e-154 513.8 0.2 2.3e-154 513.7 0.2 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) SWIRM PF04433.12 gi|298674956|ref|YP_003726706.1| - 0.026 14.6 0.1 0.12 12.5 0.1 2.0 2 0 0 2 2 2 0 SWIRM domain UPF0278 PF08745.6 gi|298674957|ref|YP_003726707.1| - 1.3e-90 302.1 0.1 1.5e-90 301.9 0.1 1.0 1 0 0 1 1 1 1 UPF0278 family ORC4_C PF14629.1 gi|298674957|ref|YP_003726707.1| - 0.035 13.4 0.0 0.074 12.4 0.0 1.7 1 1 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus B12-binding PF02310.14 gi|298674958|ref|YP_003726708.1| - 3.6e-26 91.3 0.5 6e-26 90.6 0.3 1.5 1 1 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|298674958|ref|YP_003726708.1| - 1.9e-16 59.8 0.0 3.6e-16 58.9 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain OrfB_IS605 PF01385.14 gi|298674959|ref|YP_003726709.1| - 4.4e-51 173.4 1.0 4.4e-51 173.4 0.7 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674959|ref|YP_003726709.1| - 3.4e-11 42.6 0.1 1.1e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298674959|ref|YP_003726709.1| - 0.0082 16.2 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) AAA PF00004.24 gi|298674960|ref|YP_003726710.1| - 4.8e-97 321.2 0.1 2.5e-47 160.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|298674960|ref|YP_003726710.1| - 1.2e-22 79.6 0.9 1.6e-21 76.0 1.2 2.5 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|298674960|ref|YP_003726710.1| - 4.2e-16 59.3 0.0 4.4e-07 29.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|298674960|ref|YP_003726710.1| - 4.2e-13 49.6 0.0 5.1e-05 23.3 0.0 3.1 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|298674960|ref|YP_003726710.1| - 9.8e-13 47.6 0.0 3.2e-05 23.0 0.0 2.9 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|298674960|ref|YP_003726710.1| - 2e-12 46.5 0.0 6.9e-12 44.8 0.0 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|298674960|ref|YP_003726710.1| - 2.7e-12 47.5 0.1 1.9e-05 25.4 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|298674960|ref|YP_003726710.1| - 6.8e-12 45.4 0.0 6.4e-05 22.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|298674960|ref|YP_003726710.1| - 1.7e-11 44.3 2.9 0.0015 18.7 0.1 4.4 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|298674960|ref|YP_003726710.1| - 4e-10 38.9 0.1 0.00012 20.9 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|298674960|ref|YP_003726710.1| - 1.3e-09 37.8 2.8 0.0007 19.3 0.2 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|298674960|ref|YP_003726710.1| - 8.7e-09 35.3 0.0 0.0021 17.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|298674960|ref|YP_003726710.1| - 9.7e-09 34.6 0.0 0.00036 19.7 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.21 gi|298674960|ref|YP_003726710.1| - 9.6e-08 31.6 0.3 0.054 12.9 0.0 3.9 2 2 0 2 2 2 2 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|298674960|ref|YP_003726710.1| - 1.1e-07 31.5 0.0 0.012 15.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|298674960|ref|YP_003726710.1| - 1.1e-07 31.5 0.7 0.014 15.0 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain Arch_ATPase PF01637.13 gi|298674960|ref|YP_003726710.1| - 3.1e-07 30.3 1.4 0.018 14.7 0.1 3.6 2 2 2 4 4 4 2 Archaeal ATPase AAA_24 PF13479.1 gi|298674960|ref|YP_003726710.1| - 1.1e-06 28.3 0.0 0.033 13.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|298674960|ref|YP_003726710.1| - 1.8e-06 28.0 0.0 0.038 14.1 0.0 2.8 2 1 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|298674960|ref|YP_003726710.1| - 2.1e-06 28.0 0.0 0.087 13.1 0.0 3.1 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|298674960|ref|YP_003726710.1| - 2.5e-06 27.8 0.0 0.079 13.2 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Mg_chelatase PF01078.16 gi|298674960|ref|YP_003726710.1| - 3.9e-06 26.1 0.1 0.0075 15.4 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|298674960|ref|YP_003726710.1| - 5.7e-06 26.3 0.1 0.11 12.3 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|298674960|ref|YP_003726710.1| - 7.8e-06 25.4 9.1 0.057 12.8 0.6 4.7 3 2 1 4 4 4 2 AAA domain Bac_DnaA PF00308.13 gi|298674960|ref|YP_003726710.1| - 8.6e-06 25.5 0.0 0.019 14.6 0.0 2.8 2 1 0 2 2 2 2 Bacterial dnaA protein NACHT PF05729.7 gi|298674960|ref|YP_003726710.1| - 1.1e-05 25.2 0.2 0.23 11.1 0.0 4.0 3 1 1 4 4 4 1 NACHT domain Vps4_C PF09336.5 gi|298674960|ref|YP_003726710.1| - 1.4e-05 24.8 0.2 0.007 16.2 0.0 3.3 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain PhoH PF02562.11 gi|298674960|ref|YP_003726710.1| - 2.5e-05 23.6 0.9 0.084 12.0 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein DUF815 PF05673.8 gi|298674960|ref|YP_003726710.1| - 2.6e-05 23.2 0.0 0.028 13.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|298674960|ref|YP_003726710.1| - 0.00025 20.1 0.0 0.12 11.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Guanylate_kin PF00625.16 gi|298674960|ref|YP_003726710.1| - 0.00049 19.5 2.1 3.8 6.8 0.0 4.4 3 1 1 4 4 4 0 Guanylate kinase AAA_3 PF07726.6 gi|298674960|ref|YP_003726710.1| - 0.00055 19.5 0.0 0.052 13.1 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|298674960|ref|YP_003726710.1| - 0.00056 19.5 0.0 0.56 9.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|298674960|ref|YP_003726710.1| - 0.00072 18.5 0.1 1.1 8.1 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|298674960|ref|YP_003726710.1| - 0.001 19.1 0.0 0.94 9.5 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|298674960|ref|YP_003726710.1| - 0.0013 17.6 0.1 1.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 KAP_NTPase PF07693.9 gi|298674960|ref|YP_003726710.1| - 0.0015 17.6 0.1 4.3 6.2 0.0 3.4 2 2 2 4 4 4 0 KAP family P-loop domain KaiC PF06745.8 gi|298674960|ref|YP_003726710.1| - 0.0023 17.0 3.4 0.68 8.9 0.0 3.7 2 2 1 4 4 4 1 KaiC AFG1_ATPase PF03969.11 gi|298674960|ref|YP_003726710.1| - 0.0037 16.1 0.0 0.37 9.5 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase ATP-synt_ab PF00006.20 gi|298674960|ref|YP_003726710.1| - 0.0046 16.4 0.1 1.8 7.9 0.0 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|298674960|ref|YP_003726710.1| - 0.0053 17.0 0.1 6.3 7.0 0.0 3.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|298674960|ref|YP_003726710.1| - 0.017 14.8 6.3 3.2 7.4 0.0 4.7 3 2 2 5 5 4 0 NTPase SKI PF01202.17 gi|298674960|ref|YP_003726710.1| - 0.037 13.8 0.1 3.7 7.4 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.10 gi|298674960|ref|YP_003726710.1| - 0.052 13.3 0.0 5.8 6.6 0.0 2.8 2 1 1 3 3 3 0 Type III restriction enzyme, res subunit DAP3 PF10236.4 gi|298674960|ref|YP_003726710.1| - 0.052 12.4 0.0 2.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Molydop_binding PF01568.16 gi|298674960|ref|YP_003726710.1| - 0.053 13.3 0.1 7.7 6.3 0.1 3.1 3 0 0 3 3 3 0 Molydopterin dinucleotide binding domain T2SE PF00437.15 gi|298674960|ref|YP_003726710.1| - 0.054 12.3 0.0 8.9 5.1 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein DEAD PF00270.24 gi|298674960|ref|YP_003726710.1| - 0.054 12.9 3.1 20 4.5 0.1 3.9 2 2 1 4 4 4 0 DEAD/DEAH box helicase Cytidylate_kin2 PF13189.1 gi|298674960|ref|YP_003726710.1| - 0.054 13.3 0.3 1.1 9.1 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family UPF0079 PF02367.12 gi|298674960|ref|YP_003726710.1| - 0.057 13.0 0.0 11 5.6 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 IPT PF01745.11 gi|298674960|ref|YP_003726710.1| - 0.066 12.3 0.1 2.6 7.1 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase PduV-EutP PF10662.4 gi|298674960|ref|YP_003726710.1| - 0.079 12.4 0.0 10 5.6 0.0 2.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_21 PF13304.1 gi|298674960|ref|YP_003726710.1| - 0.09 12.7 4.3 5.9 6.7 0.4 3.5 2 2 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|298674960|ref|YP_003726710.1| - 0.38 10.1 1.9 19 4.5 0.0 3.1 4 1 0 4 4 3 0 AAA-like domain DUF556 PF04476.8 gi|298674961|ref|YP_003726711.1| - 1.6e-98 328.6 0.3 1.8e-98 328.4 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) His_biosynth PF00977.16 gi|298674962|ref|YP_003726712.1| - 6.5e-38 130.2 1.0 7.3e-38 130.1 0.7 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein TIM PF00121.13 gi|298674962|ref|YP_003726712.1| - 0.015 14.3 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 Triosephosphate isomerase CutA1 PF03091.10 gi|298674962|ref|YP_003726712.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 CutA1 divalent ion tolerance protein ThiG PF05690.9 gi|298674962|ref|YP_003726712.1| - 0.035 13.1 1.4 0.36 9.8 0.1 2.1 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|298674962|ref|YP_003726712.1| - 0.062 11.8 0.5 6.8 5.1 0.0 2.3 2 0 0 2 2 2 0 Tryptophan synthase alpha chain TSLP PF15216.1 gi|298674962|ref|YP_003726712.1| - 0.096 12.4 0.2 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 Thymic stromal lymphopoietin PcrB PF01884.12 gi|298674962|ref|YP_003726712.1| - 0.34 10.1 4.4 0.47 9.6 0.1 2.7 2 1 1 3 3 3 0 PcrB family PipA PF07108.6 gi|298674963|ref|YP_003726713.1| - 0.1 11.9 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 PipA protein Thymidylate_kin PF02223.12 gi|298674964|ref|YP_003726714.1| - 3.6e-45 153.6 0.0 4.2e-45 153.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|298674964|ref|YP_003726714.1| - 5.5e-10 39.6 0.1 1.6e-09 38.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|298674964|ref|YP_003726714.1| - 1.1e-06 28.5 0.0 2.2e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|298674964|ref|YP_003726714.1| - 0.0002 21.3 0.0 0.00026 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.14 gi|298674964|ref|YP_003726714.1| - 0.00024 21.0 0.1 0.00038 20.3 0.1 1.4 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_17 PF13207.1 gi|298674964|ref|YP_003726714.1| - 0.0018 19.0 0.1 0.0075 17.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|298674964|ref|YP_003726714.1| - 0.009 15.1 0.1 0.079 12.0 0.1 2.8 1 1 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|298674964|ref|YP_003726714.1| - 0.013 15.6 0.0 0.17 11.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|298674964|ref|YP_003726714.1| - 0.032 14.1 0.2 0.25 11.2 0.0 2.2 2 1 0 2 2 2 0 AAA domain Herpes_TK PF00693.13 gi|298674964|ref|YP_003726714.1| - 0.12 11.5 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus HypA PF01155.14 gi|298674965|ref|YP_003726715.1| - 0.00049 19.7 0.4 0.00053 19.6 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_6 PF14599.1 gi|298674965|ref|YP_003726715.1| - 0.0034 17.1 0.2 0.0038 16.9 0.1 1.1 1 0 0 1 1 1 1 Zinc-ribbon Zn-ribbon_8 PF09723.5 gi|298674965|ref|YP_003726715.1| - 0.0056 16.6 5.1 0.016 15.1 3.5 1.7 1 1 0 1 1 1 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|298674965|ref|YP_003726715.1| - 0.0067 16.1 0.8 0.037 13.7 0.1 2.0 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Ribosomal_S27e PF01667.12 gi|298674965|ref|YP_003726715.1| - 0.0068 15.9 2.1 0.016 14.7 0.1 2.0 1 1 1 2 2 2 1 Ribosomal protein S27 TFIIS_C PF01096.13 gi|298674965|ref|YP_003726715.1| - 0.018 14.6 4.7 1.3 8.6 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|298674965|ref|YP_003726715.1| - 0.033 13.4 1.2 0.05 12.8 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|298674965|ref|YP_003726715.1| - 0.034 13.9 0.3 0.86 9.4 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298674965|ref|YP_003726715.1| - 0.057 13.0 2.5 0.93 9.1 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298674965|ref|YP_003726715.1| - 0.061 13.0 2.5 1 9.1 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|298674965|ref|YP_003726715.1| - 0.062 13.6 3.7 1.8 9.1 0.5 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|298674965|ref|YP_003726715.1| - 0.077 12.3 1.5 0.48 9.7 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|298674965|ref|YP_003726715.1| - 0.082 12.6 0.8 0.15 11.8 0.5 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-tcix PF14952.1 gi|298674965|ref|YP_003726715.1| - 0.091 12.1 0.1 0.16 11.3 0.1 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Rubredoxin PF00301.15 gi|298674965|ref|YP_003726715.1| - 0.1 12.4 3.3 7.9 6.4 2.3 2.1 1 1 0 1 1 1 0 Rubredoxin zf-HIT PF04438.11 gi|298674965|ref|YP_003726715.1| - 0.21 11.2 1.7 7.5 6.3 0.1 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-Sec23_Sec24 PF04810.10 gi|298674965|ref|YP_003726715.1| - 0.22 11.0 3.8 0.66 9.5 0.3 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DNA_RNApol_7kD PF03604.8 gi|298674965|ref|YP_003726715.1| - 0.26 10.7 3.7 1.3 8.5 2.7 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|298674965|ref|YP_003726715.1| - 0.26 10.9 2.4 5.1 6.8 0.3 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|298674965|ref|YP_003726715.1| - 0.3 10.9 2.5 0.57 10.0 1.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|298674965|ref|YP_003726715.1| - 0.31 10.7 6.4 2.9 7.6 0.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1 PF03811.8 gi|298674965|ref|YP_003726715.1| - 0.34 10.4 0.2 0.34 10.4 0.2 2.0 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2H2 PF00096.21 gi|298674965|ref|YP_003726715.1| - 0.92 9.9 4.0 6.9 7.2 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_5 PF13909.1 gi|298674965|ref|YP_003726715.1| - 0.99 9.7 4.1 2.3 8.5 0.4 2.1 2 0 0 2 2 2 0 C2H2-type zinc-finger domain zf-AN1 PF01428.11 gi|298674965|ref|YP_003726715.1| - 1 9.3 4.8 2.4 8.0 1.3 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger CpXC PF14353.1 gi|298674965|ref|YP_003726715.1| - 1.5 8.7 4.3 7 6.6 0.3 2.0 1 1 1 2 2 2 0 CpXC protein zf-H2C2_2 PF13465.1 gi|298674965|ref|YP_003726715.1| - 1.8 8.9 6.0 5.1 7.5 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger double domain C1_3 PF07649.7 gi|298674965|ref|YP_003726715.1| - 2 8.5 4.5 4.8 7.3 2.9 1.7 1 1 1 2 2 2 0 C1-like domain zinc_ribbon_2 PF13240.1 gi|298674965|ref|YP_003726715.1| - 2.2 7.8 5.4 3.7 7.1 3.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_5 PF14634.1 gi|298674965|ref|YP_003726715.1| - 4.2 7.1 5.8 7.8 6.3 1.6 2.0 1 1 1 2 2 2 0 zinc-RING finger domain dTMP_synthase PF02593.9 gi|298674966|ref|YP_003726716.1| - 1.9e-66 223.5 0.0 2.1e-66 223.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DapB_N PF01113.15 gi|298674966|ref|YP_003726716.1| - 2.6e-05 24.1 0.0 5.1e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus HHH_8 PF14716.1 gi|298674967|ref|YP_003726717.1| - 9.6e-19 67.3 1.0 3.3e-16 59.2 0.1 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.1 gi|298674967|ref|YP_003726717.1| - 2.1e-17 62.5 0.0 4.4e-17 61.5 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta thumb PHP PF02811.14 gi|298674967|ref|YP_003726717.1| - 3.1e-13 49.8 0.3 1.9e-12 47.2 0.1 2.3 1 1 1 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|298674967|ref|YP_003726717.1| - 1.8e-11 44.0 0.0 1.2e-07 31.7 0.0 3.6 2 1 1 3 3 3 2 Helix-hairpin-helix domain HHH PF00633.18 gi|298674967|ref|YP_003726717.1| - 3.5e-05 23.2 0.0 0.012 15.2 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|298674967|ref|YP_003726717.1| - 0.0039 16.7 0.0 0.024 14.1 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda TfoX_C PF04994.8 gi|298674967|ref|YP_003726717.1| - 0.0049 16.7 0.1 2.2 8.2 0.0 2.9 1 1 1 2 2 2 2 TfoX C-terminal domain Cdd1 PF11731.3 gi|298674967|ref|YP_003726717.1| - 0.0074 16.1 0.0 0.35 10.8 0.0 2.8 1 1 0 1 1 1 1 Pathogenicity locus DNA_pol_B_palm PF14792.1 gi|298674967|ref|YP_003726717.1| - 0.039 14.0 0.2 0.22 11.5 0.0 2.3 2 0 0 2 2 2 0 DNA polymerase beta palm PHP_C PF13263.1 gi|298674967|ref|YP_003726717.1| - 0.077 12.5 0.1 0.7 9.4 0.0 2.6 3 0 0 3 3 3 0 PHP-associated DUF2114 PF09887.4 gi|298674968|ref|YP_003726718.1| - 8.3e-224 742.9 3.9 9.6e-224 742.7 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) R_equi_Vir PF05526.6 gi|298674968|ref|YP_003726718.1| - 0.018 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Rhodococcus equi virulence-associated protein Pan_kinase PF03309.9 gi|298674968|ref|YP_003726718.1| - 0.064 12.7 0.1 13 5.2 0.0 2.6 2 0 0 2 2 2 0 Type III pantothenate kinase Thioredoxin PF00085.15 gi|298674969|ref|YP_003726719.1| - 2.6e-29 100.9 0.1 3.4e-29 100.5 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|298674969|ref|YP_003726719.1| - 3e-09 37.0 0.1 1.8e-08 34.5 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|298674969|ref|YP_003726719.1| - 3.8e-08 33.3 0.3 1e-05 25.5 0.0 2.5 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_6 PF13848.1 gi|298674969|ref|YP_003726719.1| - 1.7e-05 24.6 0.0 2e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|298674969|ref|YP_003726719.1| - 1.9e-05 24.3 0.1 0.00034 20.3 0.1 2.1 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_3 PF13192.1 gi|298674969|ref|YP_003726719.1| - 4.9e-05 23.0 0.6 9.7e-05 22.1 0.0 1.8 2 1 0 2 2 2 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|298674969|ref|YP_003726719.1| - 0.00014 21.8 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|298674969|ref|YP_003726719.1| - 0.00034 20.1 0.3 0.00052 19.5 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|298674969|ref|YP_003726719.1| - 0.00052 19.5 0.4 0.0023 17.4 0.1 2.0 1 1 1 2 2 2 1 Redoxin TraF PF13728.1 gi|298674969|ref|YP_003726719.1| - 0.0029 17.1 0.0 0.0041 16.6 0.0 1.3 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_4 PF13462.1 gi|298674969|ref|YP_003726719.1| - 0.021 14.8 0.5 0.5 10.3 0.3 2.5 1 1 0 1 1 1 0 Thioredoxin HyaE PF07449.6 gi|298674969|ref|YP_003726719.1| - 0.058 13.2 0.0 0.088 12.7 0.0 1.4 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE tRNA_bind_2 PF13725.1 gi|298674969|ref|YP_003726719.1| - 0.061 13.4 0.0 0.092 12.8 0.0 1.3 1 0 0 1 1 1 0 Possible tRNA binding domain Glutaredoxin PF00462.19 gi|298674969|ref|YP_003726719.1| - 0.062 13.2 0.4 0.31 11.0 0.1 2.1 1 1 1 2 2 2 0 Glutaredoxin Mrr_cat PF04471.7 gi|298674970|ref|YP_003726720.1| - 1e-30 105.8 0.2 1.9e-30 105.0 0.1 1.5 1 0 0 1 1 1 1 Restriction endonuclease bPH_3 PF14470.1 gi|298674970|ref|YP_003726720.1| - 4.2e-06 26.9 7.6 0.0025 18.0 1.1 2.5 2 0 0 2 2 2 2 Bacterial PH domain DUF2691 PF10903.3 gi|298674970|ref|YP_003726720.1| - 0.042 13.6 0.9 0.084 12.6 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2691) PBP5_C PF07943.8 gi|298674970|ref|YP_003726720.1| - 0.072 13.1 2.2 1.8 8.6 1.5 2.5 1 1 0 1 1 1 0 Penicillin-binding protein 5, C-terminal domain E1-E2_ATPase PF00122.15 gi|298674971|ref|YP_003726721.1| - 1.6e-59 200.7 4.6 4.1e-58 196.1 1.8 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|298674971|ref|YP_003726721.1| - 4.1e-49 167.8 5.7 1.6e-48 165.9 3.2 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|298674971|ref|YP_003726721.1| - 1.7e-42 143.3 21.5 1.8e-15 56.8 0.2 4.6 5 0 0 5 5 5 3 Heavy-metal-associated domain HAD PF12710.2 gi|298674971|ref|YP_003726721.1| - 4.4e-13 49.8 0.1 1.1e-12 48.4 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|298674971|ref|YP_003726721.1| - 5.9e-06 26.0 3.2 7.3e-05 22.4 0.8 2.4 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Tox-PL-2 PF15643.1 gi|298674971|ref|YP_003726721.1| - 0.0039 17.1 0.2 3.9 7.5 0.0 3.1 3 0 0 3 3 3 2 Papain fold toxin 2 DUF59 PF01883.14 gi|298674971|ref|YP_003726721.1| - 0.0081 16.1 1.3 1.3 9.0 0.0 3.5 3 0 0 3 3 3 1 Domain of unknown function DUF59 Thioredoxin_3 PF13192.1 gi|298674971|ref|YP_003726721.1| - 0.073 12.8 3.8 6.9 6.5 0.1 3.7 3 0 0 3 3 3 0 Thioredoxin domain DUF1761 PF08570.5 gi|298674972|ref|YP_003726722.1| - 0.039 13.9 0.7 0.044 13.8 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1761) Keratin_assoc PF09775.4 gi|298674972|ref|YP_003726722.1| - 0.065 12.7 2.3 0.076 12.5 1.6 1.1 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 Fun_ATP-synt_8 PF05933.8 gi|298674972|ref|YP_003726722.1| - 0.068 13.2 0.4 0.068 13.2 0.3 2.0 1 1 1 2 2 2 0 Fungal ATP synthase protein 8 (A6L) DUF4233 PF14017.1 gi|298674972|ref|YP_003726722.1| - 0.074 12.9 2.0 0.087 12.7 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) DUF2929 PF11151.3 gi|298674972|ref|YP_003726722.1| - 0.084 12.9 0.7 0.084 12.9 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) DUF3817 PF12823.2 gi|298674972|ref|YP_003726722.1| - 0.084 13.3 0.9 0.1 13.0 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3817) PilX_N PF14341.1 gi|298674972|ref|YP_003726722.1| - 0.17 11.5 3.5 2.2 8.0 0.1 2.2 2 0 0 2 2 2 0 PilX N-terminal DUF2970 PF11174.3 gi|298674972|ref|YP_003726722.1| - 0.41 10.2 7.5 0.73 9.4 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) Radical_SAM PF04055.16 gi|298674973|ref|YP_003726723.1| - 2.5e-13 50.5 0.2 3.7e-13 49.9 0.2 1.3 1 0 0 1 1 1 1 Radical SAM superfamily FrhB_FdhB_C PF04432.8 gi|298674974|ref|YP_003726724.1| - 8.7e-41 139.0 0.0 8.7e-41 139.0 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|298674974|ref|YP_003726724.1| - 8.4e-24 83.2 0.1 2e-23 82.0 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term YHS PF04945.8 gi|298674974|ref|YP_003726724.1| - 1.4e-05 24.7 1.7 3.7e-05 23.4 1.2 1.6 1 0 0 1 1 1 1 YHS domain Fer4 PF00037.22 gi|298674974|ref|YP_003726724.1| - 6e-05 22.4 14.7 0.0083 15.6 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298674974|ref|YP_003726724.1| - 0.00076 19.4 15.2 0.012 15.6 9.3 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298674974|ref|YP_003726724.1| - 0.0038 17.7 6.8 0.3 11.6 0.2 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|298674974|ref|YP_003726724.1| - 0.0064 16.3 15.7 0.1 12.5 1.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298674974|ref|YP_003726724.1| - 0.0065 16.2 13.2 0.0065 16.2 9.1 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298674974|ref|YP_003726724.1| - 0.012 15.4 11.5 0.041 13.7 8.0 1.9 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298674974|ref|YP_003726724.1| - 0.018 15.3 2.2 0.018 15.3 1.6 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain ATPase-cat_bd PF12156.3 gi|298674974|ref|YP_003726724.1| - 0.019 15.5 1.2 0.019 15.5 0.8 2.2 2 0 0 2 2 1 0 Putative metal-binding domain of cation transport ATPase Fer4_9 PF13187.1 gi|298674974|ref|YP_003726724.1| - 0.027 14.7 18.4 0.039 14.2 9.4 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674974|ref|YP_003726724.1| - 0.04 14.2 17.3 0.72 10.2 2.2 3.1 2 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298674974|ref|YP_003726724.1| - 0.16 12.3 20.1 0.36 11.2 10.9 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298674974|ref|YP_003726724.1| - 0.27 11.9 14.7 0.53 11.0 0.2 3.2 4 0 0 4 4 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|298674974|ref|YP_003726724.1| - 0.48 10.8 15.0 0.68 10.3 1.9 2.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674974|ref|YP_003726724.1| - 0.59 10.1 18.5 0.58 10.1 1.7 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|298674974|ref|YP_003726724.1| - 5.2 7.5 15.7 0.2 12.0 0.7 3.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain Glu-tRNAGln PF02686.10 gi|298674975|ref|YP_003726725.1| - 1.1e-25 89.2 1.0 1.3e-25 88.9 0.7 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit SSV1_ORF_D-335 PF07935.6 gi|298674975|ref|YP_003726725.1| - 0.046 13.4 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 ORF D-335-like protein Amidase PF01425.16 gi|298674976|ref|YP_003726726.1| - 1e-152 509.1 0.1 1.1e-152 508.9 0.0 1.0 1 0 0 1 1 1 1 Amidase GatB_N PF02934.10 gi|298674977|ref|YP_003726727.1| - 4.8e-113 376.8 0.0 9.4e-113 375.8 0.0 1.4 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|298674977|ref|YP_003726727.1| - 3.8e-44 149.9 3.8 6.3e-44 149.2 2.6 1.4 1 0 0 1 1 1 1 GatB domain DUF498 PF04430.9 gi|298674978|ref|YP_003726728.1| - 8.3e-17 60.7 0.0 9.4e-17 60.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF4138 PF13595.1 gi|298674978|ref|YP_003726728.1| - 0.0019 17.2 0.1 0.0029 16.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4138) AF0941-like PF14591.1 gi|298674978|ref|YP_003726728.1| - 0.095 12.7 1.1 0.16 12.0 0.7 1.3 1 1 0 1 1 1 0 AF0941-like UPF0180 PF03698.8 gi|298674978|ref|YP_003726728.1| - 0.13 12.0 1.1 1.8 8.4 0.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0180) LAGLIDADG_WhiA PF14527.1 gi|298674978|ref|YP_003726728.1| - 0.29 11.0 1.2 12 5.8 0.0 2.1 1 1 1 2 2 2 0 WhiA LAGLIDADG-like domain DJ-1_PfpI PF01965.19 gi|298674979|ref|YP_003726729.1| - 2.5e-30 104.8 0.2 3e-30 104.6 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|298674979|ref|YP_003726729.1| - 6.4e-11 41.8 0.0 7.7e-11 41.5 0.0 1.0 1 0 0 1 1 1 1 Putative amidotransferase Phage_attach PF05354.6 gi|298674979|ref|YP_003726729.1| - 0.055 13.0 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Phage Head-Tail Attachment GATase_3 PF07685.9 gi|298674979|ref|YP_003726729.1| - 0.08 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|298674979|ref|YP_003726729.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.5 1 1 0 1 1 1 0 Glutamine amidotransferase class-I NOGCT PF08155.6 gi|298674979|ref|YP_003726729.1| - 0.15 11.7 0.9 7.6 6.3 0.1 2.4 2 0 0 2 2 2 0 NOGCT (NUC087) domain UPF0029 PF01205.14 gi|298674980|ref|YP_003726730.1| - 1.8e-36 124.1 0.0 2.6e-36 123.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|298674980|ref|YP_003726730.1| - 1.4e-06 27.8 0.2 2.5e-06 26.9 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) OrfB_IS605 PF01385.14 gi|298674980|ref|YP_003726730.1| - 0.0083 15.5 0.5 0.028 13.8 0.1 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_IS605 PF01385.14 gi|298674981|ref|YP_003726731.1| - 3.6e-49 167.1 0.4 6.9e-49 166.2 0.3 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298674981|ref|YP_003726731.1| - 5e-10 38.8 0.4 2.5e-09 36.6 0.1 2.3 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298674981|ref|YP_003726731.1| - 0.00046 19.7 0.3 0.0014 18.2 0.2 1.8 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298674981|ref|YP_003726731.1| - 0.0051 16.9 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) DUF4612 PF15389.1 gi|298674981|ref|YP_003726731.1| - 0.15 12.6 1.1 0.23 12.0 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4612) DUF1699 PF08004.6 gi|298674983|ref|YP_003726733.1| - 1.2e-59 199.5 1.5 1.4e-59 199.3 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) HSBP1 PF06825.7 gi|298674983|ref|YP_003726733.1| - 0.085 12.4 0.7 0.19 11.3 0.5 1.6 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Na_Ca_ex PF01699.19 gi|298674984|ref|YP_003726734.1| - 6.8e-56 187.7 35.3 9e-29 99.8 8.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Flg_bb_rod PF00460.15 gi|298674984|ref|YP_003726734.1| - 3.3 7.5 12.7 0.21 11.3 1.7 2.8 3 0 0 3 3 3 0 Flagella basal body rod protein DUF2117 PF09890.4 gi|298674985|ref|YP_003726735.1| - 5e-64 215.4 0.6 6.6e-64 215.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) NAD_kinase PF01513.16 gi|298674985|ref|YP_003726735.1| - 0.038 12.7 0.1 0.058 12.1 0.1 1.2 1 0 0 1 1 1 0 ATP-NAD kinase HTH_34 PF13601.1 gi|298674986|ref|YP_003726736.1| - 8.8e-05 22.4 0.1 0.00022 21.1 0.0 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain PadR PF03551.9 gi|298674986|ref|YP_003726736.1| - 0.0022 17.7 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.12 gi|298674986|ref|YP_003726736.1| - 0.015 14.7 0.2 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.14 gi|298674986|ref|YP_003726736.1| - 0.019 14.6 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_S41 PF03572.13 gi|298674986|ref|YP_003726736.1| - 0.066 12.6 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S41 ER PF01133.12 gi|298674986|ref|YP_003726736.1| - 0.13 11.9 0.5 8.8 6.0 0.1 2.3 1 1 1 2 2 2 0 Enhancer of rudimentary ThiS PF02597.15 gi|298674987|ref|YP_003726737.1| - 0.058 13.8 0.2 0.073 13.5 0.1 1.3 1 0 0 1 1 1 0 ThiS family ApbE PF02424.10 gi|298674989|ref|YP_003726739.1| - 1.6e-23 83.2 1.8 1.8e-22 79.8 1.3 2.0 1 1 0 1 1 1 1 ApbE family Fer4 PF00037.22 gi|298674990|ref|YP_003726740.1| - 1.3e-13 49.8 14.2 3.9e-07 29.3 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298674990|ref|YP_003726740.1| - 5.2e-11 41.9 15.0 2.2e-06 27.3 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298674990|ref|YP_003726740.1| - 5.7e-11 42.6 13.3 8.9e-11 42.0 9.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298674990|ref|YP_003726740.1| - 7.4e-11 42.1 24.3 4.8e-08 33.1 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298674990|ref|YP_003726740.1| - 1.2e-09 38.0 4.1 0.00015 21.7 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298674990|ref|YP_003726740.1| - 2.6e-09 36.7 13.2 4.2e-09 36.0 9.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298674990|ref|YP_003726740.1| - 2.1e-08 33.5 13.2 0.00022 20.9 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298674990|ref|YP_003726740.1| - 4.5e-08 32.7 12.6 0.00083 19.4 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298674990|ref|YP_003726740.1| - 8e-08 32.9 11.2 0.0012 19.5 2.0 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|298674990|ref|YP_003726740.1| - 1.8e-06 28.2 16.1 0.00045 20.5 2.8 2.3 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|298674990|ref|YP_003726740.1| - 2.2e-06 27.3 13.9 0.0056 16.5 2.2 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298674990|ref|YP_003726740.1| - 4.1e-06 27.0 12.7 0.0053 17.0 2.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298674990|ref|YP_003726740.1| - 1.7e-05 25.1 14.8 0.0036 17.6 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298674990|ref|YP_003726740.1| - 2.7e-05 24.3 19.5 0.011 16.1 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298674990|ref|YP_003726740.1| - 0.00033 21.1 14.3 0.0037 17.8 2.4 2.4 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|298674990|ref|YP_003726740.1| - 0.0023 17.7 5.4 0.0037 17.0 3.8 1.3 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_11 PF13247.1 gi|298674990|ref|YP_003726740.1| - 0.0048 16.7 6.0 0.018 14.9 4.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.5 gi|298674990|ref|YP_003726740.1| - 3.5 7.8 7.5 3.3 7.8 0.2 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DUF678 PF05077.7 gi|298674990|ref|YP_003726740.1| - 7.5 6.6 8.0 19 5.3 5.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF678) DUF39 PF01837.11 gi|298674991|ref|YP_003726741.1| - 2e-146 487.0 0.4 2e-146 487.0 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF39 CBS PF00571.23 gi|298674991|ref|YP_003726741.1| - 2.6e-29 100.7 1.8 1.9e-13 49.9 0.0 2.5 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|298674991|ref|YP_003726741.1| - 0.0071 16.4 0.3 0.083 12.9 0.1 2.5 1 1 1 2 2 2 1 Ribosomal protein L9, C-terminal domain DUF3826 PF12875.2 gi|298674991|ref|YP_003726741.1| - 0.53 9.9 2.6 10 5.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3826) FtsX PF02687.16 gi|298674992|ref|YP_003726742.1| - 0.75 9.5 5.7 52 3.6 4.0 2.3 1 1 0 1 1 1 0 FtsX-like permease family CTP_transf_2 PF01467.21 gi|298674993|ref|YP_003726743.1| - 9e-18 64.8 0.1 1.4e-17 64.1 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|298674993|ref|YP_003726743.1| - 0.0029 17.2 0.1 0.029 13.9 0.0 2.1 1 1 0 1 1 1 1 FAD synthetase HIGH_NTase1 PF05636.6 gi|298674993|ref|YP_003726743.1| - 0.05 12.6 0.2 3 6.7 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Aminotran_1_2 PF00155.16 gi|298674994|ref|YP_003726744.1| - 4.1e-65 220.1 0.0 4.7e-65 219.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|298674994|ref|YP_003726744.1| - 1.9e-06 27.2 0.0 3.1e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|298674994|ref|YP_003726744.1| - 0.0014 17.7 0.1 0.0026 16.8 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|298674994|ref|YP_003726744.1| - 0.0015 16.8 0.0 0.0025 16.1 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|298674994|ref|YP_003726744.1| - 0.003 16.3 0.0 0.005 15.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|298674994|ref|YP_003726744.1| - 0.0083 14.8 0.1 1.2 7.7 0.0 2.4 2 1 0 2 2 2 2 Allinase OKR_DC_1 PF01276.15 gi|298674994|ref|YP_003726744.1| - 0.02 13.4 0.0 0.03 12.8 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DMRL_synthase PF00885.14 gi|298674995|ref|YP_003726745.1| - 9.3e-32 109.6 0.0 1e-31 109.5 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.14 gi|298674996|ref|YP_003726746.1| - 5.1e-22 78.1 0.4 5.8e-22 77.9 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PAS PF00989.19 gi|298674996|ref|YP_003726746.1| - 0.086 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 PAS fold DUF2828 PF11443.3 gi|298674996|ref|YP_003726746.1| - 0.096 10.8 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2828) Aminotran_5 PF00266.14 gi|298674997|ref|YP_003726747.1| - 1.4e-39 135.9 0.0 1.7e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|298674997|ref|YP_003726747.1| - 0.014 14.5 0.1 0.026 13.6 0.0 1.5 1 1 0 1 1 1 0 Beta-eliminating lyase FAD_binding_2 PF00890.19 gi|298674997|ref|YP_003726747.1| - 0.12 11.2 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain CBS PF00571.23 gi|298674998|ref|YP_003726748.1| - 1.9e-20 72.3 0.2 2.9e-12 46.1 0.0 2.6 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|298674998|ref|YP_003726748.1| - 1.4e-12 47.2 0.0 4.2e-12 45.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|298674998|ref|YP_003726748.1| - 1.2e-10 41.2 0.0 2.8e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|298674998|ref|YP_003726748.1| - 9.5e-08 32.1 0.0 1.4e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|298674998|ref|YP_003726748.1| - 4.6e-05 22.9 0.0 7.6e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|298674998|ref|YP_003726748.1| - 0.00047 20.3 0.3 0.0032 17.6 0.0 2.3 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|298674998|ref|YP_003726748.1| - 0.0075 16.0 0.0 0.019 14.7 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|298674998|ref|YP_003726748.1| - 0.024 14.0 0.0 0.36 10.2 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Pou PF00157.12 gi|298674998|ref|YP_003726748.1| - 0.092 12.4 0.0 0.27 10.8 0.0 1.8 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain AAA PF00004.24 gi|298674999|ref|YP_003726749.1| - 3.8e-94 311.8 0.0 3.7e-46 156.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|298674999|ref|YP_003726749.1| - 2.6e-24 84.9 0.7 5.8e-23 80.6 1.5 2.6 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|298674999|ref|YP_003726749.1| - 1.9e-15 56.2 0.9 4.7e-15 54.9 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|298674999|ref|YP_003726749.1| - 2.4e-14 53.6 0.0 2.3e-06 27.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|298674999|ref|YP_003726749.1| - 7.3e-13 48.7 0.1 0.0002 21.4 0.0 4.1 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|298674999|ref|YP_003726749.1| - 1.3e-12 47.2 0.0 5.7e-05 22.2 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|298674999|ref|YP_003726749.1| - 1.4e-12 48.0 0.1 1.5e-05 25.1 0.0 3.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|298674999|ref|YP_003726749.1| - 1.6e-11 44.2 0.0 0.00013 21.8 0.0 2.9 2 1 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|298674999|ref|YP_003726749.1| - 1.9e-11 43.4 0.0 7.5e-06 25.1 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_17 PF13207.1 gi|298674999|ref|YP_003726749.1| - 7.1e-11 42.9 0.0 9.8e-05 23.1 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|298674999|ref|YP_003726749.1| - 7.2e-11 42.0 0.0 0.00011 22.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|298674999|ref|YP_003726749.1| - 1.8e-10 40.6 3.7 0.0011 18.6 0.2 4.7 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|298674999|ref|YP_003726749.1| - 8e-10 38.3 0.6 0.00042 20.0 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain TIP49 PF06068.8 gi|298674999|ref|YP_003726749.1| - 1.6e-09 36.9 0.2 0.00065 18.5 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|298674999|ref|YP_003726749.1| - 2.9e-09 36.5 0.0 0.0044 16.4 0.0 3.2 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|298674999|ref|YP_003726749.1| - 6.2e-09 36.2 0.1 0.015 15.5 0.0 4.1 4 0 0 4 4 4 2 AAA domain NACHT PF05729.7 gi|298674999|ref|YP_003726749.1| - 1.3e-08 34.6 0.2 0.15 11.7 0.0 4.4 3 1 1 4 4 4 2 NACHT domain Sigma54_activat PF00158.21 gi|298674999|ref|YP_003726749.1| - 1.1e-07 31.4 0.0 0.0095 15.4 0.0 3.2 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|298674999|ref|YP_003726749.1| - 2e-07 30.3 0.2 0.0074 15.4 0.0 2.8 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|298674999|ref|YP_003726749.1| - 1.4e-06 28.3 0.0 0.047 13.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|298674999|ref|YP_003726749.1| - 1.7e-06 28.4 0.0 0.02 15.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.1 gi|298674999|ref|YP_003726749.1| - 3.2e-06 26.6 5.2 0.055 12.8 0.2 4.0 2 2 1 3 3 3 2 AAA domain AAA_24 PF13479.1 gi|298674999|ref|YP_003726749.1| - 9.2e-06 25.3 0.0 0.014 14.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|298674999|ref|YP_003726749.1| - 1.1e-05 25.5 0.0 0.11 12.7 0.0 3.1 3 0 0 3 3 2 2 RNA helicase Arch_ATPase PF01637.13 gi|298674999|ref|YP_003726749.1| - 1.2e-05 25.1 0.0 0.39 10.3 0.0 3.4 2 2 0 2 2 2 2 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|298674999|ref|YP_003726749.1| - 2.1e-05 24.5 0.0 0.34 10.9 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|298674999|ref|YP_003726749.1| - 2.2e-05 23.7 0.1 0.29 10.3 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|298674999|ref|YP_003726749.1| - 6.3e-05 22.5 0.0 0.36 10.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|298674999|ref|YP_003726749.1| - 7.7e-05 21.7 0.0 0.064 12.1 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|298674999|ref|YP_003726749.1| - 8.4e-05 21.5 0.0 0.094 11.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.1 gi|298674999|ref|YP_003726749.1| - 0.0002 20.9 0.0 0.16 11.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.12 gi|298674999|ref|YP_003726749.1| - 0.00021 20.2 0.0 0.19 10.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|298674999|ref|YP_003726749.1| - 0.00022 20.3 0.0 0.12 11.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|298674999|ref|YP_003726749.1| - 0.00023 20.8 0.1 0.67 9.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|298674999|ref|YP_003726749.1| - 0.00037 19.6 2.2 0.38 9.8 0.0 3.6 3 1 1 4 4 4 1 KaiC UPF0079 PF02367.12 gi|298674999|ref|YP_003726749.1| - 0.00042 19.9 0.0 1.4 8.5 0.0 2.7 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|298674999|ref|YP_003726749.1| - 0.0011 18.0 0.3 0.22 10.4 0.0 2.8 2 2 1 4 4 3 1 KAP family P-loop domain SKI PF01202.17 gi|298674999|ref|YP_003726749.1| - 0.0016 18.3 0.1 2.7 7.8 0.0 2.8 3 0 0 3 3 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|298674999|ref|YP_003726749.1| - 0.0028 17.3 0.0 4.3 7.0 0.0 3.4 2 2 0 2 2 2 0 NTPase ResIII PF04851.10 gi|298674999|ref|YP_003726749.1| - 0.0036 17.1 0.0 2.8 7.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Bac_DnaA PF00308.13 gi|298674999|ref|YP_003726749.1| - 0.0037 16.9 0.0 1.4 8.5 0.0 3.1 3 1 0 3 3 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|298674999|ref|YP_003726749.1| - 0.0041 16.6 0.0 3.4 7.0 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|298674999|ref|YP_003726749.1| - 0.0068 15.3 0.0 2.7 6.8 0.0 2.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AFG1_ATPase PF03969.11 gi|298674999|ref|YP_003726749.1| - 0.012 14.4 0.0 0.77 8.5 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.16 gi|298674999|ref|YP_003726749.1| - 0.028 13.8 0.1 11 5.4 0.0 4.0 2 2 2 4 4 4 0 Guanylate kinase PduV-EutP PF10662.4 gi|298674999|ref|YP_003726749.1| - 0.05 13.0 0.0 4.4 6.7 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|298674999|ref|YP_003726749.1| - 0.053 12.9 0.0 9.8 5.5 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.7 gi|298674999|ref|YP_003726749.1| - 0.055 13.0 0.0 8.4 5.9 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.13 gi|298674999|ref|YP_003726749.1| - 0.11 12.0 0.0 13 5.2 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MtmB PF05369.7 gi|298675000|ref|YP_003726750.1| - 2e-276 916.2 2.3 2.2e-276 916.1 1.6 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.12 gi|298675001|ref|YP_003726751.1| - 1.6e-21 76.0 0.1 2.9e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|298675001|ref|YP_003726751.1| - 1.8e-18 66.5 0.3 3.3e-18 65.6 0.2 1.4 1 0 0 1 1 1 1 B12 binding domain MFS_1 PF07690.11 gi|298675002|ref|YP_003726752.1| - 2.6e-35 121.7 74.0 5.4e-28 97.7 27.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|298675002|ref|YP_003726752.1| - 4.1e-07 28.9 29.4 4.7e-07 28.7 9.5 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|298675002|ref|YP_003726752.1| - 7.4 4.5 11.7 9.6 4.1 2.0 2.1 1 1 1 2 2 2 0 Transmembrane secretion effector DUF918 PF06033.6 gi|298675003|ref|YP_003726753.1| - 0.019 14.4 0.1 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF918) RAMP PF04901.8 gi|298675003|ref|YP_003726753.1| - 0.2 11.4 2.6 0.3 10.8 1.2 1.7 2 0 0 2 2 2 0 Receptor activity modifying family DUF2551 PF10826.3 gi|298675004|ref|YP_003726754.1| - 2.3e-31 107.5 1.3 2.9e-31 107.2 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|298675004|ref|YP_003726754.1| - 0.008 16.2 0.1 0.014 15.5 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor USP7_C2 PF14533.1 gi|298675004|ref|YP_003726754.1| - 0.016 14.6 0.6 0.032 13.6 0.4 1.5 1 1 0 1 1 1 0 Ubiquitin-specific protease C-terminal TrmB PF01978.14 gi|298675005|ref|YP_003726755.1| - 0.0098 15.5 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB KaiC PF06745.8 gi|298675006|ref|YP_003726756.1| - 3.8e-45 153.7 0.2 4.4e-45 153.5 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|298675006|ref|YP_003726756.1| - 6.3e-07 28.0 0.2 9.8e-07 27.4 0.1 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|298675006|ref|YP_003726756.1| - 1.1e-05 24.9 0.0 1.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|298675006|ref|YP_003726756.1| - 8.9e-05 21.6 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|298675006|ref|YP_003726756.1| - 0.00027 19.9 0.0 0.00042 19.2 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|298675006|ref|YP_003726756.1| - 0.00095 18.6 0.6 0.0024 17.3 0.0 1.9 3 0 0 3 3 3 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|298675006|ref|YP_003726756.1| - 0.0038 16.2 0.0 0.0044 16.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|298675006|ref|YP_003726756.1| - 0.0041 17.2 0.2 0.015 15.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|298675006|ref|YP_003726756.1| - 0.0042 16.0 0.0 0.0064 15.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|298675006|ref|YP_003726756.1| - 0.011 15.4 1.1 0.06 13.0 0.8 2.0 1 1 0 1 1 1 0 NTPase Ras PF00071.17 gi|298675006|ref|YP_003726756.1| - 0.018 14.4 0.4 0.063 12.6 0.0 2.0 2 1 1 3 3 3 0 Ras family MobB PF03205.9 gi|298675006|ref|YP_003726756.1| - 0.042 13.5 0.2 0.08 12.6 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|298675006|ref|YP_003726756.1| - 0.09 12.6 0.2 0.23 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain Hpr_kinase_C PF07475.7 gi|298675006|ref|YP_003726756.1| - 0.11 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain Zot PF05707.7 gi|298675006|ref|YP_003726756.1| - 0.12 11.8 0.1 0.75 9.2 0.1 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_24 PF13479.1 gi|298675006|ref|YP_003726756.1| - 0.14 11.6 2.0 0.58 9.6 1.3 2.3 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|298675006|ref|YP_003726756.1| - 0.18 10.3 0.4 0.3 9.6 0.2 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain TM_helix PF05552.7 gi|298675007|ref|YP_003726757.1| - 6.4e-29 99.3 26.3 9.3e-14 50.8 1.9 4.7 4 0 0 4 4 4 3 Conserved TM helix Colicin_V PF02674.11 gi|298675007|ref|YP_003726757.1| - 0.5 10.1 35.7 3.1 7.6 8.9 4.0 3 1 1 4 4 4 0 Colicin V production protein FecCD PF01032.13 gi|298675008|ref|YP_003726758.1| - 0.0022 16.9 0.9 0.0022 16.8 0.7 1.0 1 0 0 1 1 1 1 FecCD transport family BPD_transp_2 PF02653.11 gi|298675008|ref|YP_003726758.1| - 0.0095 14.9 1.6 0.0099 14.8 1.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Tetraspannin PF00335.15 gi|298675008|ref|YP_003726758.1| - 0.046 12.9 0.1 0.05 12.8 0.1 1.0 1 0 0 1 1 1 0 Tetraspanin family Fumarate_red_C PF02300.12 gi|298675008|ref|YP_003726758.1| - 0.093 12.6 0.3 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 Fumarate reductase subunit C ETRAMP PF09716.5 gi|298675008|ref|YP_003726758.1| - 0.16 11.9 4.4 0.33 10.9 0.0 2.0 1 1 1 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF1206 PF06724.6 gi|298675008|ref|YP_003726758.1| - 4 7.2 6.2 1.8 8.3 0.1 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) OrfB_Zn_ribbon PF07282.6 gi|298675009|ref|YP_003726759.1| - 1.6e-23 82.1 0.2 6.2e-23 80.2 0.0 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675009|ref|YP_003726759.1| - 5.6e-08 32.4 7.7 7.9e-08 31.9 5.3 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|298675009|ref|YP_003726759.1| - 0.0018 17.9 4.1 0.04 13.5 0.3 3.0 3 1 0 3 3 3 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|298675009|ref|YP_003726759.1| - 0.01 15.6 0.3 0.01 15.6 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298675009|ref|YP_003726759.1| - 0.025 13.7 2.1 0.025 13.7 1.4 2.4 3 1 1 4 4 4 0 zinc-ribbon domain UPF0547 PF10571.4 gi|298675009|ref|YP_003726759.1| - 0.036 13.7 6.0 0.23 11.2 1.8 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|298675009|ref|YP_003726759.1| - 0.066 12.7 3.7 0.79 9.2 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|298675009|ref|YP_003726759.1| - 0.15 11.1 0.9 0.72 8.9 0.6 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com CS PF04969.11 gi|298675009|ref|YP_003726759.1| - 0.26 11.8 4.1 1.3 9.6 0.2 3.0 2 1 0 2 2 2 0 CS domain DZR PF12773.2 gi|298675009|ref|YP_003726759.1| - 0.64 9.8 3.6 0.53 10.1 1.1 2.1 2 1 0 2 2 2 0 Double zinc ribbon Cys_rich_CPXG PF14255.1 gi|298675009|ref|YP_003726759.1| - 4.1 7.3 5.5 0.59 9.9 0.2 2.3 3 0 0 3 3 3 0 Cysteine-rich CPXCG IFT20 PF14931.1 gi|298675009|ref|YP_003726759.1| - 9.5 6.1 9.2 2.3 8.1 1.8 2.1 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 DUF21 PF01595.15 gi|298675010|ref|YP_003726760.1| - 5e-35 120.4 4.9 6.9e-35 119.9 3.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 PPDK_N PF01326.14 gi|298675011|ref|YP_003726761.1| - 1.7e-90 303.4 0.0 2.8e-90 302.7 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|298675011|ref|YP_003726761.1| - 5.3e-54 183.0 0.0 8.3e-54 182.4 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|298675011|ref|YP_003726761.1| - 6.4e-22 76.9 0.3 1.9e-21 75.4 0.2 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Lactamase_B_2 PF12706.2 gi|298675012|ref|YP_003726762.1| - 8e-24 84.2 0.1 9.5e-24 84.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298675012|ref|YP_003726762.1| - 2.2e-11 43.7 0.6 4.8e-11 42.6 0.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|298675012|ref|YP_003726762.1| - 8.4e-06 25.5 0.0 2e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|298675012|ref|YP_003726762.1| - 0.088 11.7 0.1 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II URO-D PF01208.12 gi|298675013|ref|YP_003726763.1| - 5.4e-79 265.6 0.0 6.2e-79 265.4 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) EF-hand_6 PF13405.1 gi|298675014|ref|YP_003726764.1| - 0.013 15.3 0.0 0.12 12.2 0.0 1.9 1 1 1 2 2 2 0 EF-hand domain EF-hand_7 PF13499.1 gi|298675014|ref|YP_003726764.1| - 0.11 12.6 0.1 0.22 11.7 0.1 1.5 1 1 0 1 1 1 0 EF-hand domain pair OrfB_IS605 PF01385.14 gi|298675015|ref|YP_003726765.1| - 3.4e-56 190.2 5.7 4.4e-56 189.8 4.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675015|ref|YP_003726765.1| - 6.1e-12 45.0 0.0 1.3e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glyco_hydro_97 PF10566.4 gi|298675015|ref|YP_003726765.1| - 0.0059 15.7 0.1 0.0059 15.7 0.1 1.6 2 0 0 2 2 2 1 Glycoside hydrolase 97 DUF1059 PF06348.6 gi|298675016|ref|YP_003726766.1| - 0.007 16.1 0.1 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) PLAC9 PF15205.1 gi|298675016|ref|YP_003726766.1| - 0.019 15.2 0.3 0.024 14.8 0.2 1.2 1 0 0 1 1 1 0 Placenta-specific protein 9 DUF2758 PF10957.3 gi|298675016|ref|YP_003726766.1| - 0.047 13.5 1.4 0.073 12.9 0.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2758) Sm_multidrug_ex PF06695.6 gi|298675017|ref|YP_003726767.1| - 2.2e-36 124.6 1.1 3.5e-36 124.0 0.8 1.3 1 0 0 1 1 1 1 Putative small multi-drug export protein Cytochrome_CBB3 PF13442.1 gi|298675018|ref|YP_003726768.1| - 1.1e-07 31.8 0.0 1.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.16 gi|298675018|ref|YP_003726768.1| - 3.2e-07 31.0 0.0 5.6e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Cytochrome c Chordopox_A13L PF05961.6 gi|298675018|ref|YP_003726768.1| - 0.084 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Chordopoxvirus A13L protein Inhibitor_I29 PF08246.7 gi|298675019|ref|YP_003726769.1| - 0.41 10.9 5.1 7.3 6.9 0.7 3.3 3 0 0 3 3 3 0 Cathepsin propeptide inhibitor domain (I29) DUF92 PF01940.11 gi|298675020|ref|YP_003726770.1| - 1.2e-70 237.2 14.9 1.2e-70 237.2 10.3 2.3 2 1 0 2 2 2 1 Integral membrane protein DUF92 HATPase_c PF02518.21 gi|298675021|ref|YP_003726771.1| - 4.1e-30 103.7 0.1 6.7e-30 103.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|298675021|ref|YP_003726771.1| - 2.6e-21 75.3 0.2 6.6e-21 74.0 0.0 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|298675021|ref|YP_003726771.1| - 5e-14 52.5 0.1 1.3e-13 51.1 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|298675021|ref|YP_003726771.1| - 3e-12 46.3 0.0 6.1e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|298675021|ref|YP_003726771.1| - 1.7e-06 27.6 0.0 4.4e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|298675021|ref|YP_003726771.1| - 0.00018 21.1 0.1 0.00041 19.9 0.1 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|298675021|ref|YP_003726771.1| - 0.0042 16.7 0.2 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|298675021|ref|YP_003726771.1| - 0.021 14.5 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|298675021|ref|YP_003726771.1| - 0.038 14.0 0.0 0.079 13.0 0.0 1.6 1 0 0 1 1 1 0 PAS fold PAS_4 PF08448.5 gi|298675021|ref|YP_003726771.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 PAS fold DUF420 PF04238.7 gi|298675022|ref|YP_003726772.1| - 2e-06 27.7 16.7 2.7e-06 27.3 11.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|298675022|ref|YP_003726772.1| - 0.029 14.4 2.8 0.029 14.4 2.0 2.5 1 1 0 2 2 2 0 Predicted membrane protein (DUF2306) DUF4536 PF15055.1 gi|298675022|ref|YP_003726772.1| - 0.47 10.5 1.9 4.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) DUF2663 PF10864.3 gi|298675022|ref|YP_003726772.1| - 1.2 9.4 3.8 0.56 10.4 0.2 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2663) DUF2648 PF10855.3 gi|298675022|ref|YP_003726772.1| - 1.2 8.6 5.0 14 5.2 1.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) H_PPase PF03030.11 gi|298675022|ref|YP_003726772.1| - 1.3 7.1 4.2 1.3 7.1 2.9 1.1 1 0 0 1 1 1 0 Inorganic H+ pyrophosphatase HTH_24 PF13412.1 gi|298675023|ref|YP_003726773.1| - 9.3e-15 53.7 1.6 2e-07 30.2 0.0 2.8 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|298675023|ref|YP_003726773.1| - 5.2e-08 32.4 0.1 0.00027 20.5 0.0 2.4 2 1 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|298675023|ref|YP_003726773.1| - 9.1e-07 28.4 0.1 0.05 13.3 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.2 gi|298675023|ref|YP_003726773.1| - 6.4e-05 22.5 0.0 0.41 10.3 0.0 2.2 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|298675023|ref|YP_003726773.1| - 0.00012 21.8 0.0 0.00055 19.6 0.0 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|298675023|ref|YP_003726773.1| - 0.00022 20.9 0.0 0.55 10.0 0.0 2.3 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|298675023|ref|YP_003726773.1| - 0.0019 17.8 0.0 0.021 14.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|298675023|ref|YP_003726773.1| - 0.0045 16.5 0.0 0.35 10.5 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|298675023|ref|YP_003726773.1| - 0.043 13.8 0.1 0.28 11.2 0.0 2.3 2 1 0 2 2 2 0 Winged helix DNA-binding domain FaeA PF04703.7 gi|298675023|ref|YP_003726773.1| - 0.062 13.4 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein HTH_27 PF13463.1 gi|298675023|ref|YP_003726773.1| - 0.063 13.6 0.0 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2582 PF10771.4 gi|298675023|ref|YP_003726773.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) HTH_WhiA PF02650.9 gi|298675023|ref|YP_003726773.1| - 0.13 12.7 0.5 0.59 10.5 0.0 2.1 3 0 0 3 3 2 0 WhiA C-terminal HTH domain PPC PF04151.10 gi|298675024|ref|YP_003726774.1| - 1.6 9.7 5.2 2.5 9.1 2.5 2.2 2 1 1 3 3 3 0 Bacterial pre-peptidase C-terminal domain DUF2140 PF09911.4 gi|298675025|ref|YP_003726775.1| - 0.046 12.8 1.8 0.077 12.1 1.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) Peptidase_C39_2 PF13529.1 gi|298675026|ref|YP_003726776.1| - 8.8e-17 61.7 1.4 2.8e-16 60.1 1.0 1.9 1 0 0 1 1 1 1 Peptidase_C39 like family NosD PF05048.8 gi|298675027|ref|YP_003726777.1| - 1.1e-44 152.3 136.9 5.3e-18 65.0 25.4 3.0 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|298675027|ref|YP_003726777.1| - 7.4e-22 77.7 95.1 5.3e-15 55.5 30.3 3.6 1 1 1 3 3 3 2 Right handed beta helix region Ammonium_transp PF00909.16 gi|298675028|ref|YP_003726778.1| - 6.9e-125 416.6 38.1 8.5e-125 416.3 26.4 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family Ndc1_Nup PF09531.5 gi|298675028|ref|YP_003726778.1| - 2.7 6.2 9.4 5.1 5.3 6.5 1.4 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup XhlA PF10779.4 gi|298675028|ref|YP_003726778.1| - 9.3 6.2 7.2 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 Haemolysin XhlA P-II PF00543.17 gi|298675029|ref|YP_003726779.1| - 3.4e-39 133.4 2.0 3.8e-39 133.2 1.4 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|298675029|ref|YP_003726779.1| - 0.19 11.7 1.0 35 4.4 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF970) Cupredoxin_1 PF13473.1 gi|298675030|ref|YP_003726780.1| - 3.5e-13 49.3 0.1 4.3e-13 49.0 0.1 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|298675030|ref|YP_003726780.1| - 5.6e-11 42.5 2.3 2.7e-09 37.1 1.6 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PKD PF00801.15 gi|298675030|ref|YP_003726780.1| - 0.0016 18.1 5.4 0.22 11.3 3.8 2.3 1 1 0 1 1 1 1 PKD domain DUF4097 PF13349.1 gi|298675030|ref|YP_003726780.1| - 0.03 13.8 0.3 0.036 13.6 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4097) ATHILA PF03078.10 gi|298675030|ref|YP_003726780.1| - 0.14 10.6 0.4 0.18 10.3 0.3 1.1 1 0 0 1 1 1 0 ATHILA ORF-1 family AMP-binding PF00501.23 gi|298675031|ref|YP_003726781.1| - 2.5e-16 59.0 0.0 3.4e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|298675031|ref|YP_003726781.1| - 0.00089 18.0 0.1 0.089 11.4 0.1 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE Thioredox_DsbH PF03190.10 gi|298675032|ref|YP_003726782.1| - 7.7e-77 256.5 0.0 6e-76 253.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|298675032|ref|YP_003726782.1| - 2.6e-14 53.0 0.0 6.2e-14 51.7 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_76 PF03663.9 gi|298675032|ref|YP_003726782.1| - 1e-09 38.2 1.4 1.3e-05 24.7 0.1 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.1 gi|298675032|ref|YP_003726782.1| - 2.4e-05 24.4 0.0 6.1e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|298675032|ref|YP_003726782.1| - 3.1e-05 23.1 3.6 0.0077 15.2 0.1 2.6 3 0 0 3 3 3 2 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.6 gi|298675032|ref|YP_003726782.1| - 0.001 18.1 0.4 2.7 6.9 0.0 3.3 2 1 0 3 3 3 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_9 PF00759.14 gi|298675032|ref|YP_003726782.1| - 0.0031 16.4 0.7 0.015 14.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase family 9 LANC_like PF05147.8 gi|298675032|ref|YP_003726782.1| - 0.0067 15.0 2.3 13 4.1 0.0 4.4 4 1 0 5 5 5 1 Lanthionine synthetase C-like protein QueC PF06508.8 gi|298675033|ref|YP_003726783.1| - 5.4e-60 202.2 0.0 6.2e-60 202.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|298675033|ref|YP_003726783.1| - 1.3e-05 24.7 0.0 0.00071 19.1 0.0 2.1 2 0 0 2 2 2 1 PP-loop family ThiI PF02568.9 gi|298675033|ref|YP_003726783.1| - 0.00058 19.3 0.0 0.76 9.2 0.0 2.3 2 0 0 2 2 2 2 Thiamine biosynthesis protein (ThiI) NAD_synthase PF02540.12 gi|298675033|ref|YP_003726783.1| - 0.017 14.0 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Fer2 PF00111.22 gi|298675033|ref|YP_003726783.1| - 0.021 14.5 0.1 0.056 13.1 0.0 1.7 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain tRNA_Me_trans PF03054.11 gi|298675033|ref|YP_003726783.1| - 0.048 12.2 0.0 0.087 11.3 0.0 1.4 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|298675033|ref|YP_003726783.1| - 0.076 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DUF366 PF04017.7 gi|298675034|ref|YP_003726784.1| - 1.6e-70 236.0 4.5 1.8e-70 235.9 3.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) Fer4_14 PF13394.1 gi|298675035|ref|YP_003726785.1| - 5.7e-14 52.1 0.0 1.1e-13 51.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|298675035|ref|YP_003726785.1| - 1.7e-10 41.3 1.2 3.1e-10 40.4 0.7 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298675035|ref|YP_003726785.1| - 4.4e-08 33.3 0.3 2.8e-07 30.7 0.0 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|298675036|ref|YP_003726786.1| - 1.5e-30 105.4 0.0 1.6e-30 105.2 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|298675037|ref|YP_003726787.1| - 4.4e-20 72.5 0.3 7.5e-20 71.7 0.2 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298675037|ref|YP_003726787.1| - 5e-06 26.5 0.1 1.3e-05 25.1 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298675037|ref|YP_003726787.1| - 5.7e-06 26.5 0.0 1.1e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AIRS PF00586.19 gi|298675038|ref|YP_003726788.1| - 2.1e-21 75.9 0.5 5.1e-21 74.7 0.2 1.8 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|298675038|ref|YP_003726788.1| - 2.7e-16 59.9 0.0 4.5e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain OrfB_IS605 PF01385.14 gi|298675040|ref|YP_003726790.1| - 1.7e-37 129.0 2.0 3.5e-37 127.9 1.4 1.5 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675040|ref|YP_003726790.1| - 2.9e-23 81.2 0.6 6.9e-23 80.0 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675040|ref|YP_003726790.1| - 2.9e-09 36.0 0.1 7.8e-09 34.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain zinc_ribbon_2 PF13240.1 gi|298675040|ref|YP_003726790.1| - 0.0028 17.0 1.3 0.85 9.1 0.1 2.7 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|298675040|ref|YP_003726790.1| - 0.0037 17.0 0.3 0.0084 15.9 0.2 1.6 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|298675040|ref|YP_003726790.1| - 0.042 13.6 1.2 0.11 12.3 0.8 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|298675040|ref|YP_003726790.1| - 0.063 12.6 0.3 10 5.5 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|298675040|ref|YP_003726790.1| - 1 8.6 4.3 11 5.4 3.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain UPF0066 PF01980.11 gi|298675041|ref|YP_003726791.1| - 5.6e-33 113.4 0.0 6.7e-33 113.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 DUF1724 PF08350.5 gi|298675042|ref|YP_003726792.1| - 4.7e-20 70.8 0.1 9.5e-20 69.9 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|298675042|ref|YP_003726792.1| - 0.0015 18.3 2.1 0.0026 17.5 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix MarR PF01047.17 gi|298675042|ref|YP_003726792.1| - 0.0045 16.6 0.2 0.012 15.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|298675042|ref|YP_003726792.1| - 0.02 14.5 0.1 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|298675042|ref|YP_003726792.1| - 0.032 13.8 0.1 0.075 12.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|298675042|ref|YP_003726792.1| - 0.061 13.0 0.2 0.61 9.8 0.1 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|298675042|ref|YP_003726792.1| - 0.063 13.3 0.0 0.26 11.3 0.0 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain Thg1C PF14413.1 gi|298675043|ref|YP_003726793.1| - 1.5e-30 105.3 0.7 2.3e-30 104.7 0.5 1.3 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|298675043|ref|YP_003726793.1| - 1.4e-29 102.4 0.2 2.1e-29 101.8 0.1 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase NLBH PF05211.7 gi|298675043|ref|YP_003726793.1| - 0.098 11.8 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Neuraminyllactose-binding hemagglutinin precursor (NLBH) PRC PF05239.11 gi|298675044|ref|YP_003726794.1| - 9.4e-15 54.2 1.8 1.3e-14 53.8 1.3 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF4525 PF15027.1 gi|298675044|ref|YP_003726794.1| - 0.093 12.2 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) Ldh_1_N PF00056.18 gi|298675045|ref|YP_003726795.1| - 1.9e-39 134.6 0.4 3.1e-39 133.9 0.2 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|298675045|ref|YP_003726795.1| - 4e-33 114.5 0.0 6e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|298675045|ref|YP_003726795.1| - 0.0016 17.8 2.3 0.014 14.7 1.6 2.2 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.11 gi|298675045|ref|YP_003726795.1| - 0.0036 16.6 0.7 0.017 14.4 0.0 2.4 3 0 0 3 3 3 1 Family 4 glycosyl hydrolase 3Beta_HSD PF01073.14 gi|298675045|ref|YP_003726795.1| - 0.012 14.3 0.1 0.02 13.5 0.1 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.12 gi|298675045|ref|YP_003726795.1| - 0.014 15.8 0.2 0.13 12.7 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.16 gi|298675045|ref|YP_003726795.1| - 0.015 15.1 0.5 0.039 13.7 0.2 1.8 2 0 0 2 2 2 0 ThiF family Shikimate_DH PF01488.15 gi|298675045|ref|YP_003726795.1| - 0.17 11.9 0.7 0.84 9.7 0.5 2.1 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DUF381 PF04038.7 gi|298675046|ref|YP_003726796.1| - 1.3e-22 79.6 0.5 1.8e-22 79.0 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|298675046|ref|YP_003726796.1| - 1.1e-20 72.7 0.1 1.7e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) CDP-OH_P_transf PF01066.16 gi|298675047|ref|YP_003726797.1| - 1.3e-13 51.0 2.3 1.3e-13 51.0 1.6 3.0 2 1 1 3 3 3 1 CDP-alcohol phosphatidyltransferase ABC2_membrane_5 PF13346.1 gi|298675047|ref|YP_003726797.1| - 2.8 7.1 33.7 0.43 9.8 19.5 2.3 2 1 0 2 2 2 0 ABC-2 family transporter protein PS_Dcarbxylase PF02666.10 gi|298675048|ref|YP_003726798.1| - 3e-29 101.7 0.2 2.4e-23 82.4 0.0 2.1 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.17 gi|298675048|ref|YP_003726798.1| - 0.078 13.0 0.1 1.9 8.5 0.1 2.7 2 1 1 3 3 3 0 Peptidase family M23 Exosortase_EpsH PF09721.5 gi|298675049|ref|YP_003726799.1| - 2.4e-48 164.6 22.3 2.8e-48 164.4 15.5 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) NUDIX PF00293.23 gi|298675050|ref|YP_003726800.1| - 3.3e-18 65.6 0.0 3.9e-18 65.3 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain TFIIS_C PF01096.13 gi|298675051|ref|YP_003726801.1| - 9.7e-18 63.5 17.0 1.1e-17 63.4 3.4 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|298675051|ref|YP_003726801.1| - 8.5e-07 28.5 10.5 1.6e-06 27.6 1.6 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|298675051|ref|YP_003726801.1| - 3.1e-06 26.8 5.3 0.016 14.9 0.5 2.3 2 0 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|298675051|ref|YP_003726801.1| - 0.00056 19.5 11.8 0.0045 16.5 1.5 2.7 1 1 2 3 3 3 2 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|298675051|ref|YP_003726801.1| - 0.00093 18.6 15.5 0.32 10.5 3.6 3.6 3 1 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298675051|ref|YP_003726801.1| - 0.00095 18.3 13.2 0.31 10.3 3.0 3.6 3 1 1 4 4 4 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298675051|ref|YP_003726801.1| - 0.0024 17.5 16.9 0.24 11.1 0.5 4.1 4 0 0 4 4 4 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|298675051|ref|YP_003726801.1| - 0.0025 17.2 9.3 0.59 9.6 0.0 3.5 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|298675051|ref|YP_003726801.1| - 0.0027 17.5 1.2 0.0027 17.5 0.8 3.0 2 1 1 3 3 3 1 Transposase zinc-ribbon domain zf-RING_UBOX PF13445.1 gi|298675051|ref|YP_003726801.1| - 0.0035 17.0 1.2 1.6 8.5 0.3 2.3 2 0 0 2 2 2 1 RING-type zinc-finger Zn-ribbon_8 PF09723.5 gi|298675051|ref|YP_003726801.1| - 0.0054 16.6 9.9 7.1 6.6 0.1 4.2 4 0 0 4 4 4 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|298675051|ref|YP_003726801.1| - 0.0064 16.1 7.8 1.2 8.9 0.7 3.1 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|298675051|ref|YP_003726801.1| - 0.0091 15.5 18.3 0.28 10.8 0.5 4.1 3 1 0 3 3 3 1 zinc-ribbon domain GFA PF04828.9 gi|298675051|ref|YP_003726801.1| - 0.029 14.3 0.5 0.029 14.3 0.4 3.0 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-BED PF02892.10 gi|298675051|ref|YP_003726801.1| - 0.055 13.2 1.8 4.1 7.2 0.1 3.1 3 0 0 3 3 3 0 BED zinc finger FYVE PF01363.16 gi|298675051|ref|YP_003726801.1| - 0.067 13.0 10.3 1.5 8.7 7.1 2.4 1 1 0 1 1 1 0 FYVE zinc finger RRN7 PF11781.3 gi|298675051|ref|YP_003726801.1| - 0.092 12.2 8.8 14 5.2 0.2 4.1 4 0 0 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 C1_1 PF00130.17 gi|298675051|ref|YP_003726801.1| - 0.11 12.3 10.7 0.97 9.2 1.1 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|298675051|ref|YP_003726801.1| - 0.11 12.2 0.6 0.11 12.2 0.4 2.8 2 1 0 2 2 2 0 zinc-ribbons Nudix_N_2 PF14803.1 gi|298675051|ref|YP_003726801.1| - 0.12 12.1 11.9 1.1 9.0 0.9 4.1 3 1 0 3 3 3 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.7 gi|298675051|ref|YP_003726801.1| - 0.12 12.1 5.8 3.7 7.4 0.0 3.4 2 2 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|298675051|ref|YP_003726801.1| - 0.13 12.0 13.8 0.3 10.7 0.0 3.6 3 1 1 4 4 4 0 Uncharacterised protein family UPF0547 zf-AN1 PF01428.11 gi|298675051|ref|YP_003726801.1| - 0.13 12.2 10.6 0.84 9.5 1.9 3.1 3 0 0 3 3 3 0 AN1-like Zinc finger TF_Zn_Ribbon PF08271.7 gi|298675051|ref|YP_003726801.1| - 0.13 11.5 11.4 0.44 9.9 0.4 3.5 2 2 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|298675051|ref|YP_003726801.1| - 0.17 11.5 9.7 1.8 8.3 0.7 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|298675051|ref|YP_003726801.1| - 0.27 11.1 10.9 19 5.2 2.8 3.4 3 1 0 3 3 3 0 IBR domain Cytochrome_C554 PF13435.1 gi|298675051|ref|YP_003726801.1| - 0.35 10.9 4.8 4.7 7.2 3.2 2.0 1 1 1 2 2 2 0 Cytochrome c554 and c-prime Ogr_Delta PF04606.7 gi|298675051|ref|YP_003726801.1| - 0.38 10.4 10.3 0.15 11.6 0.4 3.2 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger DUF951 PF06107.6 gi|298675051|ref|YP_003726801.1| - 0.59 9.6 5.9 14 5.2 0.0 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF951) Ribosomal_S27e PF01667.12 gi|298675051|ref|YP_003726801.1| - 0.59 9.7 10.0 5.1 6.7 0.1 3.6 3 1 0 3 3 3 0 Ribosomal protein S27 Terminase_GpA PF05876.7 gi|298675051|ref|YP_003726801.1| - 0.78 8.0 5.6 0.17 10.1 1.9 1.4 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-ISL3 PF14690.1 gi|298675051|ref|YP_003726801.1| - 0.82 9.7 11.6 31 4.6 3.2 4.1 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.1 gi|298675051|ref|YP_003726801.1| - 0.89 9.9 11.3 3.8 7.8 1.4 3.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar Rpr2 PF04032.11 gi|298675051|ref|YP_003726801.1| - 1.1 9.1 9.5 94 2.9 6.6 3.0 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|298675051|ref|YP_003726801.1| - 1.2 8.9 4.5 2.7 7.8 0.1 2.8 3 0 0 3 3 3 0 Putative zinc ribbon domain CpXC PF14353.1 gi|298675051|ref|YP_003726801.1| - 1.3 9.0 8.0 0.75 9.7 0.5 2.9 3 1 0 3 3 3 0 CpXC protein Desulfoferrod_N PF06397.7 gi|298675051|ref|YP_003726801.1| - 1.5 8.2 9.3 8.1 5.9 0.0 3.5 4 0 0 4 4 3 0 Desulfoferrodoxin, N-terminal domain zf-C4_Topoisom PF01396.14 gi|298675051|ref|YP_003726801.1| - 3.3 7.2 9.7 6.7 6.3 0.1 3.9 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF2387 PF09526.5 gi|298675051|ref|YP_003726801.1| - 3.6 7.5 11.7 6.9 6.6 0.8 3.4 1 1 2 3 3 3 0 Probable metal-binding protein (DUF2387) Cytochrom_CIII PF02085.11 gi|298675051|ref|YP_003726801.1| - 3.8 7.6 5.9 10 6.2 0.9 2.2 1 1 0 1 1 1 0 Class III cytochrome C family zf-C2H2_4 PF13894.1 gi|298675051|ref|YP_003726801.1| - 4.1 7.9 10.5 62 4.2 0.1 4.0 4 0 0 4 4 4 0 C2H2-type zinc finger zf-FPG_IleRS PF06827.9 gi|298675051|ref|YP_003726801.1| - 5.3 6.7 11.5 22 4.8 0.0 4.0 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS zf-DNA_Pol PF08996.5 gi|298675051|ref|YP_003726801.1| - 6.4 6.0 7.3 0.58 9.4 0.3 2.3 1 1 0 2 2 2 0 DNA Polymerase alpha zinc finger Baculo_LEF5_C PF11792.3 gi|298675051|ref|YP_003726801.1| - 6.6 6.2 12.7 0.3 10.5 1.2 3.3 3 1 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-MYND PF01753.13 gi|298675051|ref|YP_003726801.1| - 8.2 6.3 11.8 4.5e+03 -2.4 8.2 3.0 1 1 0 1 1 0 0 MYND finger DnaJ_CXXCXGXG PF00684.14 gi|298675051|ref|YP_003726801.1| - 8.5 6.5 10.9 1e+02 3.0 5.2 3.0 2 1 0 2 2 2 0 DnaJ central domain Stc1 PF12898.2 gi|298675051|ref|YP_003726801.1| - 8.9 6.4 11.4 17 5.5 0.8 2.9 1 1 1 2 2 2 0 Stc1 domain Opy2 PF09463.5 gi|298675051|ref|YP_003726801.1| - 9.7 6.3 10.6 1.4 9.0 0.4 2.9 3 0 0 3 3 3 0 Opy2 protein PCNA_N PF00705.13 gi|298675052|ref|YP_003726802.1| - 2.1e-13 49.8 2.1 1.2e-12 47.4 0.3 2.4 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|298675052|ref|YP_003726802.1| - 3.2e-10 40.0 0.0 4.4e-08 33.0 0.0 2.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|298675052|ref|YP_003726802.1| - 0.00075 18.6 0.0 0.013 14.6 0.0 2.1 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta PF00712.14 gi|298675052|ref|YP_003726802.1| - 0.00086 19.1 0.8 0.0035 17.2 0.2 2.1 2 0 0 2 2 2 1 DNA polymerase III beta subunit, N-terminal domain DNA_primase_lrg PF04104.9 gi|298675053|ref|YP_003726803.1| - 1.8e-39 135.6 0.7 8.5e-39 133.3 0.5 1.8 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PrkA PF06798.7 gi|298675053|ref|YP_003726803.1| - 0.0047 16.2 0.2 0.008 15.4 0.1 1.3 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain TFIID_20kDa PF03847.8 gi|298675053|ref|YP_003726803.1| - 0.038 14.2 0.2 0.17 12.2 0.0 2.1 2 0 0 2 2 2 0 Transcription initiation factor TFIID subunit A Mut7-C PF01927.11 gi|298675053|ref|YP_003726803.1| - 0.092 12.7 0.2 0.5 10.3 0.1 2.0 2 0 0 2 2 2 0 Mut7-C RNAse domain GATase_3 PF07685.9 gi|298675054|ref|YP_003726804.1| - 8.5e-32 109.9 0.3 1.3e-31 109.3 0.2 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|298675054|ref|YP_003726804.1| - 6.5e-28 97.4 0.1 9.9e-28 96.8 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|298675054|ref|YP_003726804.1| - 2.4e-18 66.4 3.5 2.7e-11 43.4 0.2 2.6 2 1 1 3 3 3 2 AAA domain Peptidase_S51 PF03575.12 gi|298675054|ref|YP_003726804.1| - 0.037 13.7 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S51 PRK PF00485.13 gi|298675054|ref|YP_003726804.1| - 0.11 12.0 0.1 3.5 7.1 0.0 2.3 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family SNO PF01174.14 gi|298675054|ref|YP_003726804.1| - 0.12 11.9 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 SNO glutamine amidotransferase family NTPase_1 PF03266.10 gi|298675054|ref|YP_003726804.1| - 0.13 12.0 0.1 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 NTPase Radical_SAM PF04055.16 gi|298675055|ref|YP_003726805.1| - 5.9e-31 107.8 0.2 1.2e-30 106.8 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|298675055|ref|YP_003726805.1| - 1.8e-26 92.3 0.3 3.1e-26 91.5 0.2 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|298675055|ref|YP_003726805.1| - 1.6e-08 34.7 0.0 4.5e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298675055|ref|YP_003726805.1| - 2.3e-08 34.0 0.0 7e-08 32.5 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain HIPIP PF01355.12 gi|298675055|ref|YP_003726805.1| - 0.059 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 High potential iron-sulfur protein PA-IIL PF07472.6 gi|298675056|ref|YP_003726806.1| - 0.13 12.5 0.1 0.13 12.4 0.1 1.0 1 0 0 1 1 1 0 Fucose-binding lectin II (PA-IIL) SurE PF01975.12 gi|298675057|ref|YP_003726807.1| - 5.1e-57 192.3 0.1 6.3e-57 192.0 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_21 PF05050.7 gi|298675058|ref|YP_003726808.1| - 1.2e-10 41.6 0.1 2e-10 40.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.1 gi|298675058|ref|YP_003726808.1| - 6.5e-05 22.5 0.0 9.4e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|298675058|ref|YP_003726808.1| - 0.00024 20.7 0.0 0.0007 19.2 0.0 1.7 2 0 0 2 2 2 1 Met-10+ like-protein DREV PF05219.7 gi|298675058|ref|YP_003726808.1| - 0.00084 18.2 0.0 0.0014 17.5 0.0 1.4 1 0 0 1 1 1 1 DREV methyltransferase RrnaAD PF00398.15 gi|298675058|ref|YP_003726808.1| - 0.012 14.6 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|298675058|ref|YP_003726808.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675058|ref|YP_003726808.1| - 0.026 15.1 0.0 0.046 14.2 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain AhpC-TSA PF00578.16 gi|298675059|ref|YP_003726809.1| - 3.9e-32 110.5 0.0 5.4e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.4 gi|298675059|ref|YP_003726809.1| - 3.8e-11 42.4 0.0 7.5e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.5 gi|298675059|ref|YP_003726809.1| - 3.4e-10 39.6 0.0 1.5e-09 37.5 0.0 1.9 1 1 0 1 1 1 1 Redoxin DDR PF08841.5 gi|298675059|ref|YP_003726809.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain GLTT PF01744.15 gi|298675060|ref|YP_003726810.1| - 1.9e-05 23.9 0.3 0.28 10.6 0.0 2.8 2 1 1 3 3 3 2 GLTT repeat (6 copies) Pentapeptide_2 PF01469.13 gi|298675060|ref|YP_003726810.1| - 0.0029 17.2 8.9 0.041 13.5 1.8 2.3 1 1 0 1 1 1 1 Pentapeptide repeats (8 copies) Cation_ATPase_C PF00689.16 gi|298675060|ref|YP_003726810.1| - 3.3 7.2 8.0 1.5 8.2 3.4 1.8 1 1 1 2 2 2 0 Cation transporting ATPase, C-terminus Peptidase_U32 PF01136.14 gi|298675061|ref|YP_003726811.1| - 1.3e-81 272.9 0.0 1.6e-81 272.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family U32 GTP_EFTU_D2 PF03144.20 gi|298675061|ref|YP_003726811.1| - 0.011 15.8 0.2 0.025 14.6 0.2 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 2 DsbD PF02683.10 gi|298675062|ref|YP_003726812.1| - 1e-16 61.2 13.9 1.6e-16 60.5 9.6 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|298675062|ref|YP_003726812.1| - 2.3e-11 43.3 0.7 4.1e-11 42.5 0.5 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin PF00085.15 gi|298675062|ref|YP_003726812.1| - 1.7e-06 27.6 0.1 3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DUF2910 PF11139.3 gi|298675062|ref|YP_003726812.1| - 3.3e-06 26.3 8.1 3.3e-06 26.3 5.6 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2910) Glutaredoxin PF00462.19 gi|298675062|ref|YP_003726812.1| - 0.0053 16.7 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 Glutaredoxin ODV-E18 PF10717.4 gi|298675062|ref|YP_003726812.1| - 0.73 9.3 0.0 0.73 9.3 0.0 2.9 3 0 0 3 3 3 0 Occlusion-derived virus envelope protein ODV-E18 DUF2231 PF09990.4 gi|298675062|ref|YP_003726812.1| - 4.9 7.5 8.5 0.98 9.7 0.1 3.1 2 1 1 4 4 4 0 Predicted membrane protein (DUF2231) FAD_binding_7 PF03441.9 gi|298675064|ref|YP_003726814.1| - 1.5e-89 299.9 0.7 1.9e-89 299.5 0.5 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|298675064|ref|YP_003726814.1| - 6.2e-46 156.1 0.0 1.1e-45 155.3 0.0 1.4 1 0 0 1 1 1 1 DNA photolyase DEAD PF00270.24 gi|298675065|ref|YP_003726815.1| - 5.8e-26 90.9 0.0 1.3e-25 89.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase TPR_11 PF13414.1 gi|298675065|ref|YP_003726815.1| - 1.2e-18 66.5 3.7 4.3e-11 42.3 0.3 2.5 2 0 0 2 2 2 2 TPR repeat DUF1998 PF09369.5 gi|298675065|ref|YP_003726815.1| - 3.9e-15 56.1 0.0 1.1e-14 54.7 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) TPR_2 PF07719.12 gi|298675065|ref|YP_003726815.1| - 7.5e-13 47.3 6.1 0.00018 21.1 0.2 3.7 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|298675065|ref|YP_003726815.1| - 8.1e-13 47.3 8.7 0.00061 19.2 0.4 3.8 3 0 0 3 3 3 3 Tetratricopeptide repeat Helicase_C PF00271.26 gi|298675065|ref|YP_003726815.1| - 3e-12 46.2 0.1 1.3e-11 44.2 0.0 2.2 2 0 0 2 2 1 1 Helicase conserved C-terminal domain TPR_19 PF14559.1 gi|298675065|ref|YP_003726815.1| - 1.1e-09 38.4 0.9 1.4e-05 25.2 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|298675065|ref|YP_003726815.1| - 3.4e-09 35.8 3.9 0.043 13.5 0.0 4.0 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|298675065|ref|YP_003726815.1| - 2.2e-08 34.5 0.0 0.0071 16.9 0.0 2.4 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|298675065|ref|YP_003726815.1| - 1.2e-07 31.6 4.4 2e-06 27.6 0.7 2.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|298675065|ref|YP_003726815.1| - 1.3e-07 31.3 0.0 0.00012 21.9 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298675065|ref|YP_003726815.1| - 4.9e-06 26.7 0.0 0.017 15.7 0.0 2.9 2 0 0 2 2 2 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|298675065|ref|YP_003726815.1| - 1.3e-05 24.9 6.0 0.013 15.3 0.2 3.5 1 1 2 3 3 3 2 Fis1 C-terminal tetratricopeptide repeat Apc3 PF12895.2 gi|298675065|ref|YP_003726815.1| - 0.0014 18.7 4.7 0.0028 17.7 3.3 1.6 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|298675065|ref|YP_003726815.1| - 0.0077 16.3 5.7 0.034 14.3 0.2 3.3 3 0 0 3 3 2 1 Tetratricopeptide repeat MIT PF04212.13 gi|298675065|ref|YP_003726815.1| - 0.017 14.9 0.5 0.86 9.5 0.0 2.7 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.1 gi|298675065|ref|YP_003726815.1| - 0.03 14.5 0.4 2.5 8.3 0.0 2.6 1 1 1 2 2 2 0 Alkyl sulfatase dimerisation OrfB_IS605 PF01385.14 gi|298675066|ref|YP_003726816.1| - 1.6e-57 194.4 6.4 2.2e-57 194.0 4.4 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675066|ref|YP_003726816.1| - 1.5e-11 43.7 0.0 3.1e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PAS_9 PF13426.1 gi|298675067|ref|YP_003726817.1| - 9.7e-63 209.0 4.8 6.1e-13 49.0 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|298675067|ref|YP_003726817.1| - 2.4e-39 133.6 0.3 8.7e-11 41.6 0.0 6.3 5 2 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|298675067|ref|YP_003726817.1| - 2.6e-39 133.6 0.0 2.5e-08 33.9 0.0 5.3 5 0 0 5 5 5 5 PAS fold PAS_3 PF08447.6 gi|298675067|ref|YP_003726817.1| - 3.9e-35 119.8 1.0 2.6e-16 59.4 0.1 5.8 5 1 0 5 5 5 4 PAS fold HATPase_c PF02518.21 gi|298675067|ref|YP_003726817.1| - 1.3e-27 95.6 0.1 3.8e-27 94.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|298675067|ref|YP_003726817.1| - 1.2e-22 78.8 0.0 5.5e-05 22.8 0.0 5.6 5 0 0 5 5 5 4 PAS domain HisKA PF00512.20 gi|298675067|ref|YP_003726817.1| - 2.3e-17 62.7 2.8 3.8e-14 52.4 0.0 4.6 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|298675067|ref|YP_003726817.1| - 1e-10 41.8 6.4 0.0094 16.2 0.0 6.0 4 1 2 6 6 6 2 PAS domain PAS_11 PF14598.1 gi|298675067|ref|YP_003726817.1| - 2e-10 40.5 0.0 1.5e-05 24.9 0.0 4.4 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|298675067|ref|YP_003726817.1| - 1.5e-06 28.2 2.0 0.0096 15.9 0.0 4.5 3 1 2 5 5 5 2 PAS fold HATPase_c_3 PF13589.1 gi|298675067|ref|YP_003726817.1| - 0.021 14.4 1.1 0.053 13.1 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAN_3 PF08277.7 gi|298675067|ref|YP_003726817.1| - 0.07 12.7 1.2 0.26 10.9 0.0 2.4 2 0 0 2 2 2 0 PAN-like domain PAS_9 PF13426.1 gi|298675068|ref|YP_003726818.1| - 2.5e-31 108.1 0.5 1.2e-09 38.4 0.0 3.5 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|298675068|ref|YP_003726818.1| - 1.4e-22 79.4 0.1 5.9e-22 77.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|298675068|ref|YP_003726818.1| - 3.3e-20 71.9 0.0 3e-07 30.1 0.0 3.9 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|298675068|ref|YP_003726818.1| - 1.9e-15 56.8 0.0 0.001 19.0 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|298675068|ref|YP_003726818.1| - 7.1e-15 54.2 0.3 1.3e-06 28.0 0.1 3.6 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|298675068|ref|YP_003726818.1| - 2.1e-08 34.1 0.0 0.091 12.8 0.0 3.9 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|298675068|ref|YP_003726818.1| - 2.3e-06 27.7 0.0 3.8e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|298675068|ref|YP_003726818.1| - 0.00033 21.1 0.0 0.00065 20.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|298675068|ref|YP_003726818.1| - 0.0017 18.3 1.0 0.0057 16.6 0.0 2.5 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain Ribosomal_L22 PF00237.14 gi|298675068|ref|YP_003726818.1| - 0.065 13.1 0.4 0.17 11.8 0.3 1.7 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e HATPase_c_2 PF13581.1 gi|298675068|ref|YP_003726818.1| - 0.092 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF4319 PF14203.1 gi|298675068|ref|YP_003726818.1| - 0.12 11.9 3.2 0.17 11.4 0.6 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4319) Histone PF00125.19 gi|298675068|ref|YP_003726818.1| - 0.17 12.0 0.0 0.43 10.7 0.0 1.6 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 PAPS_reduct PF01507.14 gi|298675069|ref|YP_003726819.1| - 7.4e-41 139.8 0.0 1.4e-40 138.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|298675069|ref|YP_003726819.1| - 1.8e-05 25.0 12.2 1.8e-05 25.0 8.5 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675069|ref|YP_003726819.1| - 7.3e-05 22.9 13.7 7.3e-05 22.9 9.5 3.2 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675069|ref|YP_003726819.1| - 0.00013 21.8 10.2 0.00013 21.8 7.1 3.1 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675069|ref|YP_003726819.1| - 0.00022 20.9 11.1 0.00022 20.9 7.7 3.1 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675069|ref|YP_003726819.1| - 0.0021 17.5 6.5 0.0021 17.5 4.5 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Asn_synthase PF00733.16 gi|298675069|ref|YP_003726819.1| - 0.016 14.7 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase TBP PF00352.16 gi|298675069|ref|YP_003726819.1| - 0.037 13.3 0.1 0.08 12.3 0.1 1.5 1 0 0 1 1 1 0 Transcription factor TFIID (or TATA-binding protein, TBP) Fer4_18 PF13746.1 gi|298675069|ref|YP_003726819.1| - 0.045 14.1 0.3 0.045 14.1 0.2 3.4 4 0 0 4 4 3 0 4Fe-4S dicluster domain DUF1827 PF08860.5 gi|298675069|ref|YP_003726819.1| - 0.063 13.3 1.1 0.32 11.1 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1827) ATP_bind_3 PF01171.15 gi|298675069|ref|YP_003726819.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 PP-loop family FAD_binding_3 PF01494.14 gi|298675070|ref|YP_003726820.1| - 1.1e-18 67.4 0.1 2.6e-14 53.0 0.0 2.9 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|298675070|ref|YP_003726820.1| - 1.8e-12 46.8 0.1 2.7e-05 23.2 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|298675070|ref|YP_003726820.1| - 5.5e-10 38.4 0.0 3.4e-05 22.6 0.0 2.3 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|298675070|ref|YP_003726820.1| - 4.6e-08 33.1 0.0 8.1e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|298675070|ref|YP_003726820.1| - 5.2e-08 31.7 0.1 8e-06 24.5 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|298675070|ref|YP_003726820.1| - 1.9e-07 30.5 0.0 3e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|298675070|ref|YP_003726820.1| - 4.3e-07 29.1 0.0 1.3e-06 27.6 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|298675070|ref|YP_003726820.1| - 6e-06 25.3 0.0 1.5e-05 24.0 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|298675070|ref|YP_003726820.1| - 2e-05 23.6 0.1 4.4e-05 22.5 0.1 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|298675070|ref|YP_003726820.1| - 4.2e-05 22.7 0.0 0.00044 19.4 0.0 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|298675070|ref|YP_003726820.1| - 9.4e-05 22.3 0.0 0.00056 19.8 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|298675070|ref|YP_003726820.1| - 0.00023 21.2 0.0 0.0006 19.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|298675070|ref|YP_003726820.1| - 0.0062 16.9 0.0 4.3 7.8 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|298675070|ref|YP_003726820.1| - 0.016 15.2 0.0 0.038 14.0 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|298675070|ref|YP_003726820.1| - 0.077 12.7 0.2 0.56 9.9 0.1 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|298675070|ref|YP_003726820.1| - 0.14 11.8 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Polysacc_synt_3 PF13440.1 gi|298675071|ref|YP_003726821.1| - 1.8e-21 76.7 17.8 1.8e-21 76.7 12.3 2.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|298675071|ref|YP_003726821.1| - 2.4e-20 72.9 23.4 2.4e-20 72.9 16.2 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|298675071|ref|YP_003726821.1| - 1.3e-18 67.2 19.9 1.3e-18 67.2 13.8 3.6 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|298675071|ref|YP_003726821.1| - 2.1e-10 40.4 4.7 2.1e-10 40.4 3.2 4.0 3 1 1 4 4 4 1 MatE MVIN PF03023.9 gi|298675071|ref|YP_003726821.1| - 6.4e-08 31.4 33.8 6.5e-08 31.4 22.6 1.7 1 1 0 1 1 1 1 MviN-like protein bPH_2 PF03703.9 gi|298675072|ref|YP_003726822.1| - 1.2e-17 63.6 0.1 1.7e-17 63.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_4 PF06713.6 gi|298675072|ref|YP_003726822.1| - 0.08 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain bPH_2 PF03703.9 gi|298675073|ref|YP_003726823.1| - 3.6e-35 119.8 0.8 8.6e-13 48.1 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|298675073|ref|YP_003726823.1| - 0.26 11.1 3.4 2.2 8.2 0.1 3.5 4 0 0 4 4 4 0 Bacterial PH domain DUF2207 PF09972.4 gi|298675073|ref|YP_003726823.1| - 0.61 8.5 9.2 0.43 9.1 0.6 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DHH PF01368.15 gi|298675074|ref|YP_003726824.1| - 1.3e-10 41.1 0.6 2e-10 40.4 0.4 1.4 1 0 0 1 1 1 1 DHH family APS_kinase PF01583.15 gi|298675075|ref|YP_003726825.1| - 4.9e-61 204.9 0.0 5.7e-61 204.7 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.5 gi|298675075|ref|YP_003726825.1| - 1.1e-08 34.6 0.0 1.3e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|298675075|ref|YP_003726825.1| - 9.2e-08 32.0 0.0 1.3e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298675075|ref|YP_003726825.1| - 3.1e-06 27.5 0.2 7.3e-06 26.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|298675075|ref|YP_003726825.1| - 8.4e-06 26.6 0.0 1.4e-05 25.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.13 gi|298675075|ref|YP_003726825.1| - 3.7e-05 22.9 0.0 4.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 6-phosphofructo-2-kinase ArgK PF03308.11 gi|298675075|ref|YP_003726825.1| - 0.0011 17.7 0.0 0.0024 16.7 0.0 1.4 1 0 0 1 1 1 1 ArgK protein NTPase_1 PF03266.10 gi|298675075|ref|YP_003726825.1| - 0.003 17.2 0.2 0.0049 16.5 0.1 1.5 1 1 0 1 1 1 1 NTPase Zeta_toxin PF06414.7 gi|298675075|ref|YP_003726825.1| - 0.0053 15.8 0.0 0.022 13.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin RNA_helicase PF00910.17 gi|298675075|ref|YP_003726825.1| - 0.0099 16.0 0.0 0.044 13.9 0.0 2.0 2 0 0 2 2 2 1 RNA helicase SRP54 PF00448.17 gi|298675075|ref|YP_003726825.1| - 0.014 14.8 0.0 0.03 13.7 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|298675075|ref|YP_003726825.1| - 0.021 14.8 0.1 0.045 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain Di19_C PF14571.1 gi|298675075|ref|YP_003726825.1| - 0.026 14.8 0.0 0.037 14.3 0.0 1.3 1 0 0 1 1 1 0 Stress-induced protein Di19, C-terminal CbiA PF01656.18 gi|298675075|ref|YP_003726825.1| - 0.027 13.8 0.1 0.042 13.2 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.9 gi|298675075|ref|YP_003726825.1| - 0.031 13.9 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.18 gi|298675075|ref|YP_003726825.1| - 0.032 14.2 0.0 0.045 13.7 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|298675075|ref|YP_003726825.1| - 0.033 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|298675075|ref|YP_003726825.1| - 0.037 13.8 0.1 0.077 12.8 0.1 1.6 1 1 0 1 1 1 0 Shikimate kinase AAA_16 PF13191.1 gi|298675075|ref|YP_003726825.1| - 0.048 13.6 0.0 0.063 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|298675075|ref|YP_003726825.1| - 0.073 13.2 0.1 0.2 11.8 0.1 1.8 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|298675075|ref|YP_003726825.1| - 0.092 12.1 0.2 0.16 11.2 0.1 1.5 2 0 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.22 gi|298675075|ref|YP_003726825.1| - 0.098 12.9 0.1 0.13 12.5 0.0 1.3 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|298675075|ref|YP_003726825.1| - 0.11 11.8 0.2 0.22 10.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|298675075|ref|YP_003726825.1| - 0.16 11.7 0.6 0.3 10.8 0.4 1.7 1 1 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|298675075|ref|YP_003726825.1| - 0.16 10.8 0.1 0.23 10.2 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Na_sulph_symp PF00939.14 gi|298675076|ref|YP_003726826.1| - 3.6e-77 260.2 37.9 4.5e-77 259.9 26.3 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|298675076|ref|YP_003726826.1| - 1.2e-27 96.4 39.5 4.2e-22 78.2 13.8 2.2 1 1 1 2 2 2 2 Citrate transporter DctM PF06808.7 gi|298675076|ref|YP_003726826.1| - 0.2 10.1 42.8 1.2 7.6 16.3 2.9 1 1 1 2 2 2 0 DctM-like transporters Usp PF00582.21 gi|298675077|ref|YP_003726827.1| - 8.1e-07 29.3 1.0 1.2e-06 28.8 0.7 1.3 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|298675077|ref|YP_003726827.1| - 0.012 14.8 0.1 0.039 13.2 0.0 1.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel DNA_photolyase PF00875.13 gi|298675077|ref|YP_003726827.1| - 0.037 13.7 0.0 0.058 13.1 0.0 1.3 1 1 0 1 1 1 0 DNA photolyase IF3_N PF05198.11 gi|298675077|ref|YP_003726827.1| - 0.071 13.0 0.1 0.61 10.0 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain NTP_transferase PF00483.18 gi|298675078|ref|YP_003726828.1| - 1e-43 149.4 0.0 1.1e-43 149.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|298675078|ref|YP_003726828.1| - 7.9e-14 52.0 0.0 9e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|298675078|ref|YP_003726828.1| - 2.9e-09 36.8 0.0 1.4e-08 34.5 0.0 1.9 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|298675078|ref|YP_003726828.1| - 0.0031 17.2 0.1 0.0041 16.8 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Peptidase_C8 PF03569.8 gi|298675078|ref|YP_003726828.1| - 0.017 14.3 0.0 4 6.6 0.0 2.5 1 1 0 2 2 2 0 Peptidase family C8 Glycos_transf_2 PF00535.21 gi|298675079|ref|YP_003726829.1| - 7.8e-22 77.7 0.6 1.2e-21 77.1 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|298675079|ref|YP_003726829.1| - 6.1e-19 68.7 0.0 8.3e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|298675079|ref|YP_003726829.1| - 1.6e-12 47.5 0.5 4e-12 46.2 0.3 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|298675079|ref|YP_003726829.1| - 7.5e-08 31.7 0.1 1.1e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|298675079|ref|YP_003726829.1| - 9.7e-06 24.9 0.0 1.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|298675079|ref|YP_003726829.1| - 0.0012 17.3 8.5 0.0017 16.8 0.0 2.5 3 0 0 3 3 3 1 Chitin synthase Anp1 PF03452.9 gi|298675079|ref|YP_003726829.1| - 0.049 12.7 0.0 0.075 12.1 0.0 1.3 1 0 0 1 1 1 0 Anp1 DUF2694 PF10904.3 gi|298675079|ref|YP_003726829.1| - 0.058 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2694) Glyco_tranf_2_4 PF13704.1 gi|298675079|ref|YP_003726829.1| - 0.081 13.2 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 OrfB_IS605 PF01385.14 gi|298675080|ref|YP_003726830.1| - 3.2e-48 164.1 3.2 5e-48 163.4 2.2 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675080|ref|YP_003726830.1| - 1.1e-07 31.3 0.0 3.1e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 Putative transposase DNA-binding domain DUF986 PF06173.7 gi|298675080|ref|YP_003726830.1| - 0.027 14.2 0.1 0.027 14.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF986) HATPase_c PF02518.21 gi|298675081|ref|YP_003726831.1| - 1e-31 108.9 0.0 2.3e-31 107.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|298675081|ref|YP_003726831.1| - 3.2e-25 88.4 0.2 7.1e-12 45.6 0.0 3.0 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|298675081|ref|YP_003726831.1| - 5.1e-21 74.4 0.0 2e-20 72.5 0.0 2.1 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|298675081|ref|YP_003726831.1| - 5.2e-18 64.8 0.0 9.5e-09 35.0 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|298675081|ref|YP_003726831.1| - 1.6e-17 63.5 0.0 3.9e-10 39.7 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|298675081|ref|YP_003726831.1| - 4.2e-14 51.7 0.2 1.3e-07 31.2 0.0 2.8 2 0 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.1 gi|298675081|ref|YP_003726831.1| - 4.2e-05 23.2 0.0 0.00012 21.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|298675081|ref|YP_003726831.1| - 0.00065 20.2 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain HOOK PF05622.7 gi|298675081|ref|YP_003726831.1| - 0.016 13.0 0.1 0.035 11.9 0.0 1.5 1 0 0 1 1 1 0 HOOK protein DcpS PF05652.7 gi|298675081|ref|YP_003726831.1| - 0.039 14.3 0.6 0.13 12.6 0.1 2.0 2 0 0 2 2 2 0 Scavenger mRNA decapping enzyme (DcpS) N-terminal PAS_9 PF13426.1 gi|298675082|ref|YP_003726832.1| - 9.7e-36 122.2 2.5 2.4e-11 43.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|298675082|ref|YP_003726832.1| - 3.5e-32 110.7 0.0 2.5e-11 43.5 0.0 3.8 4 1 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|298675082|ref|YP_003726832.1| - 2.4e-28 98.0 0.0 6.7e-28 96.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|298675082|ref|YP_003726832.1| - 1.8e-18 66.3 0.0 4e-06 26.5 0.0 4.2 3 1 0 3 3 3 3 PAS fold HisKA PF00512.20 gi|298675082|ref|YP_003726832.1| - 5.6e-15 55.0 0.0 1.8e-14 53.4 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|298675082|ref|YP_003726832.1| - 3.1e-12 45.8 0.0 0.00011 21.9 0.0 4.0 3 0 0 3 3 3 2 PAS domain PAS_10 PF13596.1 gi|298675082|ref|YP_003726832.1| - 5.1e-12 45.9 5.6 0.00012 22.3 0.0 4.1 4 0 0 4 4 4 2 PAS domain PAS_3 PF08447.6 gi|298675082|ref|YP_003726832.1| - 1.1e-05 25.4 0.2 0.0068 16.4 0.0 3.8 4 0 0 4 4 4 1 PAS fold HATPase_c_3 PF13589.1 gi|298675082|ref|YP_003726832.1| - 0.0002 21.0 0.1 0.00053 19.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_6 PF08348.6 gi|298675082|ref|YP_003726832.1| - 0.0028 17.1 1.5 0.088 12.3 0.1 2.5 2 0 0 2 2 2 1 YheO-like PAS domain HATPase_c_5 PF14501.1 gi|298675082|ref|YP_003726832.1| - 0.0043 16.7 0.1 0.0043 16.7 0.0 2.9 3 0 0 3 3 3 1 GHKL domain DUF1151 PF06625.6 gi|298675082|ref|YP_003726832.1| - 0.031 14.0 0.7 0.031 14.0 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1151) Mnd1 PF03962.10 gi|298675082|ref|YP_003726832.1| - 0.034 13.8 0.2 0.034 13.8 0.2 3.4 3 0 0 3 3 3 0 Mnd1 family PAS_7 PF12860.2 gi|298675082|ref|YP_003726832.1| - 0.16 12.0 1.1 27 4.7 0.0 4.3 2 2 0 3 3 3 0 PAS fold NYD-SP28_assoc PF14775.1 gi|298675082|ref|YP_003726832.1| - 0.2 11.3 8.9 0.16 11.6 2.2 2.8 2 0 0 2 2 2 0 Sperm tail C-terminal domain PAS_9 PF13426.1 gi|298675083|ref|YP_003726833.1| - 1e-52 176.8 0.8 3.8e-15 56.1 0.0 5.4 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.6 gi|298675083|ref|YP_003726833.1| - 8.1e-44 147.6 2.2 2.6e-17 62.6 0.1 4.4 5 0 0 5 5 5 3 PAS fold PAS PF00989.19 gi|298675083|ref|YP_003726833.1| - 8.7e-39 131.8 0.0 5.3e-12 45.5 0.0 5.4 5 0 0 5 5 5 5 PAS fold PAS_4 PF08448.5 gi|298675083|ref|YP_003726833.1| - 1.8e-38 130.9 0.0 4.7e-08 33.0 0.0 5.2 5 0 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|298675083|ref|YP_003726833.1| - 1.2e-21 76.4 0.2 4.8e-21 74.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|298675083|ref|YP_003726833.1| - 1.2e-15 56.6 0.0 6.4e-06 25.8 0.0 5.5 5 0 0 5 5 5 3 PAS domain PAS_11 PF14598.1 gi|298675083|ref|YP_003726833.1| - 1.2e-07 31.6 0.0 1.3e-05 25.0 0.0 3.1 4 0 0 4 4 4 1 PAS domain PAS_7 PF12860.2 gi|298675083|ref|YP_003726833.1| - 1.6e-06 28.0 0.8 0.23 11.4 0.0 4.3 5 0 0 5 5 5 2 PAS fold HisKA PF00512.20 gi|298675083|ref|YP_003726833.1| - 3.9e-05 23.5 0.8 0.00016 21.6 0.0 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|298675083|ref|YP_003726833.1| - 0.00042 19.9 0.2 0.0014 18.3 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|298675083|ref|YP_003726833.1| - 0.012 15.4 0.0 0.044 13.5 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Tic20 PF09685.5 gi|298675084|ref|YP_003726834.1| - 3.1e-13 49.6 12.0 3.7e-13 49.4 8.3 1.1 1 0 0 1 1 1 1 Tic20-like protein GtrA PF04138.9 gi|298675084|ref|YP_003726834.1| - 0.068 13.1 9.8 0.095 12.6 6.8 1.2 1 0 0 1 1 1 0 GtrA-like protein DUF998 PF06197.8 gi|298675084|ref|YP_003726834.1| - 0.082 12.2 11.8 0.17 11.1 8.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF998) Arif-1 PF06770.6 gi|298675084|ref|YP_003726834.1| - 0.18 11.1 5.3 0.21 10.9 3.7 1.1 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) DUF4257 PF14074.1 gi|298675084|ref|YP_003726834.1| - 0.65 9.6 6.3 2 8.0 4.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4257) IncA PF04156.9 gi|298675084|ref|YP_003726834.1| - 0.75 9.3 16.1 0.53 9.8 9.5 1.7 2 0 0 2 2 2 0 IncA protein DUF4389 PF14333.1 gi|298675084|ref|YP_003726834.1| - 1.6 8.5 14.0 2 8.1 0.1 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4389) DUF3754 PF12576.3 gi|298675084|ref|YP_003726834.1| - 2.9 7.5 9.2 5.9 6.5 6.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3754) Yip1 PF04893.12 gi|298675084|ref|YP_003726834.1| - 5.3 6.4 20.6 46 3.4 14.3 1.9 1 1 0 1 1 1 0 Yip1 domain DUF1499 PF07386.6 gi|298675085|ref|YP_003726835.1| - 0.011 15.9 0.0 0.1 12.7 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1499) YugN PF08868.5 gi|298675085|ref|YP_003726835.1| - 0.017 14.7 0.2 0.03 13.9 0.1 1.3 1 0 0 1 1 1 0 YugN-like family Response_reg PF00072.19 gi|298675086|ref|YP_003726836.1| - 8.5e-28 96.6 0.7 1.9e-27 95.4 0.5 1.6 1 0 0 1 1 1 1 Response regulator receiver domain IPT PF01745.11 gi|298675086|ref|YP_003726836.1| - 0.025 13.7 0.8 0.29 10.2 0.1 2.3 2 1 0 2 2 2 0 Isopentenyl transferase DUF2115 PF09888.4 gi|298675086|ref|YP_003726836.1| - 0.049 13.7 0.4 0.093 12.8 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) DUF1864 PF08933.6 gi|298675086|ref|YP_003726836.1| - 0.083 11.3 0.4 0.12 10.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1864) DUF2387 PF09526.5 gi|298675087|ref|YP_003726837.1| - 0.024 14.5 0.1 0.068 13.0 0.1 1.8 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Elf1 PF05129.8 gi|298675087|ref|YP_003726837.1| - 0.024 14.3 0.8 0.06 13.0 0.2 2.0 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-piccolo PF05715.8 gi|298675087|ref|YP_003726837.1| - 0.027 14.4 1.3 0.078 13.0 0.9 1.8 1 1 0 1 1 1 0 Piccolo Zn-finger PAS_4 PF08448.5 gi|298675088|ref|YP_003726838.1| - 3.8e-06 26.9 0.0 1.9e-05 24.6 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|298675088|ref|YP_003726838.1| - 0.014 15.7 0.0 0.032 14.6 0.0 1.6 1 0 0 1 1 1 0 PAS domain ATC_hydrolase PF14196.1 gi|298675088|ref|YP_003726838.1| - 0.021 15.2 0.4 0.034 14.5 0.3 1.5 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase TFIIB PF00382.14 gi|298675089|ref|YP_003726839.1| - 6e-47 157.3 2.6 1.7e-23 82.2 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|298675089|ref|YP_003726839.1| - 2.8e-17 61.7 3.3 3.4e-17 61.4 1.0 2.2 3 0 0 3 3 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|298675089|ref|YP_003726839.1| - 5.1e-05 22.4 0.6 0.018 14.3 0.1 3.0 2 0 0 2 2 2 1 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|298675089|ref|YP_003726839.1| - 0.00011 21.7 0.5 0.00026 20.5 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|298675089|ref|YP_003726839.1| - 0.00059 19.4 1.6 0.0011 18.6 0.3 2.0 2 0 0 2 2 2 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|298675089|ref|YP_003726839.1| - 0.0034 16.5 0.4 0.0034 16.5 0.3 1.9 2 0 0 2 2 1 1 zinc-ribbon domain HTH_AsnC-type PF13404.1 gi|298675089|ref|YP_003726839.1| - 0.022 14.3 0.2 0.071 12.6 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3752 PF12572.3 gi|298675089|ref|YP_003726839.1| - 0.033 14.2 1.6 0.058 13.5 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3752) Cyclin_N PF00134.18 gi|298675089|ref|YP_003726839.1| - 0.039 13.5 0.0 4 7.0 0.0 2.3 1 1 1 2 2 2 0 Cyclin, N-terminal domain TRP_2 PF08344.6 gi|298675089|ref|YP_003726839.1| - 0.047 13.6 0.7 1.6 8.7 0.1 2.6 2 0 0 2 2 2 0 Transient receptor ion channel II A2L_zn_ribbon PF08792.5 gi|298675089|ref|YP_003726839.1| - 0.051 13.0 1.3 0.14 11.6 0.9 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|298675089|ref|YP_003726839.1| - 0.074 13.3 0.6 0.7 10.2 0.2 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar RPA_interact_C PF14768.1 gi|298675089|ref|YP_003726839.1| - 0.12 12.7 0.3 11 6.4 0.1 2.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_31 PF13560.1 gi|298675089|ref|YP_003726839.1| - 0.17 12.0 5.0 3.4 7.9 0.0 3.4 2 1 1 3 3 3 0 Helix-turn-helix domain zf-Mss51 PF13824.1 gi|298675089|ref|YP_003726839.1| - 0.31 10.9 1.4 2.4 8.0 0.3 2.8 3 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-tcix PF14952.1 gi|298675089|ref|YP_003726839.1| - 0.75 9.1 3.5 0.71 9.2 0.8 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding HTH_23 PF13384.1 gi|298675089|ref|YP_003726839.1| - 0.78 9.4 0.0 0.78 9.4 0.0 3.1 3 1 0 3 3 3 0 Homeodomain-like domain PhnA_Zn_Ribbon PF08274.7 gi|298675089|ref|YP_003726839.1| - 9.9 6.0 9.0 2.6 7.8 3.4 2.1 2 1 0 2 2 2 0 PhnA Zinc-Ribbon RRXRR PF14239.1 gi|298675090|ref|YP_003726840.1| - 2.8e-56 189.6 4.0 4.3e-56 189.0 2.8 1.3 1 0 0 1 1 1 1 RRXRR protein HNH PF01844.18 gi|298675090|ref|YP_003726840.1| - 1.4e-10 40.8 7.5 3.3e-10 39.6 5.2 1.7 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|298675090|ref|YP_003726840.1| - 5.3e-05 22.9 0.1 0.00011 21.9 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease TPPII PF12580.3 gi|298675090|ref|YP_003726840.1| - 0.046 13.0 0.2 2.4 7.4 0.1 2.5 3 0 0 3 3 3 0 Tripeptidyl peptidase II TerD PF02342.13 gi|298675090|ref|YP_003726840.1| - 0.05 12.9 0.0 0.078 12.2 0.0 1.3 1 0 0 1 1 1 0 TerD domain PAS_9 PF13426.1 gi|298675091|ref|YP_003726841.1| - 4.2e-70 232.7 1.3 5.6e-13 49.1 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS PF00989.19 gi|298675091|ref|YP_003726841.1| - 7.7e-50 167.4 0.0 1.6e-10 40.7 0.0 7.0 6 1 0 6 6 6 6 PAS fold PAS_4 PF08448.5 gi|298675091|ref|YP_003726841.1| - 1.3e-45 153.8 0.0 7.4e-12 45.2 0.0 7.7 6 2 0 6 6 6 6 PAS fold PAS_8 PF13188.1 gi|298675091|ref|YP_003726841.1| - 4.6e-38 127.8 0.3 2.9e-09 36.4 0.0 6.5 6 0 0 6 6 6 6 PAS domain HATPase_c PF02518.21 gi|298675091|ref|YP_003726841.1| - 2.9e-32 110.6 0.0 7.6e-32 109.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|298675091|ref|YP_003726841.1| - 3.3e-21 75.0 1.3 8.9e-21 73.6 0.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|298675091|ref|YP_003726841.1| - 1.2e-20 73.4 0.1 0.0012 18.8 0.0 6.4 5 1 0 5 5 5 4 PAS fold PAS_10 PF13596.1 gi|298675091|ref|YP_003726841.1| - 1.4e-10 41.4 0.2 0.016 15.4 0.0 5.3 5 0 0 5 5 5 2 PAS domain PAS_7 PF12860.2 gi|298675091|ref|YP_003726841.1| - 1.7e-10 40.9 2.0 0.18 11.8 0.0 7.2 7 2 0 7 7 7 2 PAS fold MEKHLA PF08670.6 gi|298675091|ref|YP_003726841.1| - 0.00079 18.9 0.2 0.53 9.8 0.0 3.9 4 1 1 5 5 5 1 MEKHLA domain HATPase_c_5 PF14501.1 gi|298675091|ref|YP_003726841.1| - 0.006 16.2 0.0 0.026 14.2 0.0 2.2 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|298675091|ref|YP_003726841.1| - 0.041 13.6 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|298675092|ref|YP_003726842.1| - 1.4e-39 134.6 4.2 3.2e-13 49.9 0.0 4.8 5 0 0 5 5 5 4 PAS domain PAS_3 PF08447.6 gi|298675092|ref|YP_003726842.1| - 4.1e-39 132.5 0.8 8.3e-19 67.4 0.5 3.7 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|298675092|ref|YP_003726842.1| - 8.4e-32 109.4 0.0 1.6e-10 40.9 0.0 4.4 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.7 gi|298675092|ref|YP_003726842.1| - 1.2e-29 101.9 5.1 1.2e-29 101.9 3.5 2.4 2 0 0 2 2 1 1 Histidine kinase PAS PF00989.19 gi|298675092|ref|YP_003726842.1| - 6.3e-21 74.2 0.1 1.6e-13 50.4 0.0 4.6 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|298675092|ref|YP_003726842.1| - 6.1e-09 35.5 0.0 1.6e-08 34.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|298675092|ref|YP_003726842.1| - 8.6e-08 32.1 0.0 1.3e-05 25.0 0.0 3.1 3 0 0 3 3 3 1 PAS domain PAS_10 PF13596.1 gi|298675092|ref|YP_003726842.1| - 7e-07 29.4 0.7 0.014 15.6 0.0 3.9 3 1 1 4 4 4 2 PAS domain HWE_HK PF07536.9 gi|298675092|ref|YP_003726842.1| - 3.6e-06 27.3 1.9 4.6e-06 26.9 0.2 2.1 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298675092|ref|YP_003726842.1| - 5.9e-06 26.0 0.0 1.1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|298675092|ref|YP_003726842.1| - 0.00013 21.6 0.0 0.13 12.1 0.0 3.9 4 0 0 4 4 4 1 PAS domain Gluconate_2-dh3 PF13618.1 gi|298675092|ref|YP_003726842.1| - 0.0026 17.9 0.0 0.028 14.5 0.0 2.3 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 U1snRNP70_N PF12220.3 gi|298675092|ref|YP_003726842.1| - 0.0057 16.9 1.3 0.0057 16.9 0.9 2.9 3 0 0 3 3 2 1 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal Apolipoprotein PF01442.13 gi|298675092|ref|YP_003726842.1| - 0.012 15.1 5.1 0.034 13.6 3.5 1.7 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain HATPase_c_3 PF13589.1 gi|298675092|ref|YP_003726842.1| - 0.013 15.1 0.5 0.28 10.8 0.0 2.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|298675092|ref|YP_003726842.1| - 0.034 14.1 5.1 0.32 11.0 0.1 4.7 5 1 1 6 6 6 0 PAS fold Pepsin-I3 PF06394.8 gi|298675092|ref|YP_003726842.1| - 0.11 12.2 3.4 0.4 10.3 2.3 2.0 1 0 0 1 1 1 0 Pepsin inhibitor-3-like repeated domain CorA PF01544.13 gi|298675092|ref|YP_003726842.1| - 0.37 9.7 9.8 1.3 7.9 6.8 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein OrfB_IS605 PF01385.14 gi|298675093|ref|YP_003726843.1| - 2.6e-45 154.5 6.3 2.6e-45 154.5 4.4 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675093|ref|YP_003726843.1| - 1.1e-23 82.6 0.3 2.1e-23 81.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675093|ref|YP_003726843.1| - 1.2e-20 72.5 1.7 2.8e-20 71.3 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain M_domain PF12938.2 gi|298675093|ref|YP_003726843.1| - 0.71 9.6 6.5 0.18 11.5 1.5 1.9 2 0 0 2 2 2 0 M domain of GW182 Occludin_ELL PF07303.8 gi|298675093|ref|YP_003726843.1| - 1 10.1 8.0 0.42 11.3 2.2 2.4 2 0 0 2 2 2 0 Occludin homology domain Rubredoxin PF00301.15 gi|298675093|ref|YP_003726843.1| - 4.2 7.3 7.3 46 3.9 5.1 2.4 1 1 0 1 1 1 0 Rubredoxin EpsG PF14897.1 gi|298675094|ref|YP_003726844.1| - 0.087 11.7 0.3 0.11 11.3 0.2 1.1 1 0 0 1 1 1 0 EpsG family CrtC PF07143.6 gi|298675095|ref|YP_003726845.1| - 1e-06 28.3 1.7 1.6e-06 27.6 0.1 2.0 2 1 0 2 2 2 1 Hydroxyneurosporene synthase (CrtC) OrfB_IS605 PF01385.14 gi|298675096|ref|YP_003726846.1| - 2.2e-51 174.4 0.6 5.9e-51 173.0 0.4 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675096|ref|YP_003726846.1| - 6.5e-10 38.5 0.2 2.4e-09 36.7 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Pentapeptide_2 PF01469.13 gi|298675096|ref|YP_003726846.1| - 9e-05 22.0 1.0 0.00022 20.7 0.2 2.1 2 0 0 2 2 2 1 Pentapeptide repeats (8 copies) DUF919 PF06034.6 gi|298675096|ref|YP_003726846.1| - 0.0039 16.7 0.5 0.01 15.4 0.3 1.7 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) Radical_SAM PF04055.16 gi|298675098|ref|YP_003726848.1| - 2e-09 37.8 0.1 5.4e-09 36.4 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298675098|ref|YP_003726848.1| - 0.00012 22.1 0.2 0.00038 20.4 0.2 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain TrmB PF01978.14 gi|298675098|ref|YP_003726848.1| - 0.021 14.5 0.0 0.054 13.2 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF134 PF02001.11 gi|298675099|ref|YP_003726849.1| - 5.6e-19 67.9 0.0 7.5e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 zf-ribbon_3 PF13248.1 gi|298675099|ref|YP_003726849.1| - 0.082 12.1 4.3 1.9 7.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HTH_30 PF13556.1 gi|298675099|ref|YP_003726849.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain UPF0547 PF10571.4 gi|298675099|ref|YP_003726849.1| - 0.18 11.5 8.2 1.3 8.7 0.5 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|298675100|ref|YP_003726850.1| - 1.8e-25 88.3 2.0 8.5e-25 86.2 0.7 2.5 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675100|ref|YP_003726850.1| - 6.6e-16 58.4 1.7 1.2e-15 57.5 1.2 1.4 1 0 0 1 1 1 1 Probable transposase DUF2578 PF10843.3 gi|298675100|ref|YP_003726850.1| - 0.018 14.7 0.5 0.038 13.6 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2578) Tnp_zf-ribbon_2 PF13842.1 gi|298675100|ref|YP_003726850.1| - 0.037 14.4 5.6 0.076 13.4 3.9 1.5 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon UPF0547 PF10571.4 gi|298675100|ref|YP_003726850.1| - 0.17 11.6 1.7 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|298675100|ref|YP_003726850.1| - 0.19 11.2 5.9 0.69 9.4 4.1 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|298675100|ref|YP_003726850.1| - 1.6 8.5 6.5 4.2 7.2 4.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF790 PF05626.6 gi|298675101|ref|YP_003726851.1| - 1.6e-131 438.3 6.4 2.2e-131 437.9 4.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|298675102|ref|YP_003726852.1| - 2.9e-26 92.4 0.5 7.7e-24 84.5 0.0 3.2 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|298675102|ref|YP_003726852.1| - 7.6e-18 64.1 0.0 1.6e-17 63.0 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|298675102|ref|YP_003726852.1| - 4.3e-10 39.3 0.0 1.1e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|298675102|ref|YP_003726852.1| - 0.0018 17.1 0.1 0.017 13.9 0.1 2.5 1 1 0 1 1 1 1 SNF2 family N-terminal domain PhoH PF02562.11 gi|298675102|ref|YP_003726852.1| - 0.076 12.2 0.0 0.15 11.2 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein CHASE4 PF05228.8 gi|298675102|ref|YP_003726852.1| - 0.14 11.7 0.2 0.4 10.2 0.0 1.8 2 0 0 2 2 2 0 CHASE4 domain Usp PF00582.21 gi|298675103|ref|YP_003726853.1| - 3.5e-38 130.9 0.1 3.9e-38 130.7 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|298675103|ref|YP_003726853.1| - 0.0079 16.3 0.1 0.013 15.5 0.1 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain DXP_reductoisom PF02670.11 gi|298675103|ref|YP_003726853.1| - 0.0098 16.4 0.1 0.012 16.1 0.1 1.4 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase AP_endonuc_2 PF01261.19 gi|298675103|ref|YP_003726853.1| - 0.034 13.4 0.0 0.053 12.8 0.0 1.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel SIMPL PF04402.9 gi|298675103|ref|YP_003726853.1| - 0.051 13.4 0.6 0.07 12.9 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) NIF3 PF01784.13 gi|298675103|ref|YP_003726853.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 2 0 0 2 2 2 0 NIF3 (NGG1p interacting factor 3) VCBS PF13517.1 gi|298675104|ref|YP_003726854.1| - 6.5e-12 45.6 2.4 1.4e-11 44.5 1.7 1.6 1 0 0 1 1 1 1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|298675104|ref|YP_003726854.1| - 2.5e-11 42.9 2.9 6.2e-06 25.7 0.1 2.5 2 0 0 2 2 2 2 FG-GAP repeat TcdB_toxin_midN PF12256.3 gi|298675104|ref|YP_003726854.1| - 1.1e-06 28.2 0.3 0.0015 18.0 0.0 2.2 1 1 1 2 2 2 2 Insecticide toxin TcdB middle/N-terminal region EF-hand_5 PF13202.1 gi|298675104|ref|YP_003726854.1| - 0.068 12.5 4.5 1.7 8.1 0.0 2.7 3 0 0 3 3 3 0 EF hand Dockerin_1 PF00404.13 gi|298675104|ref|YP_003726854.1| - 8.1 6.3 7.8 25 4.8 1.1 2.5 2 0 0 2 2 2 0 Dockerin type I repeat DUF2148 PF09918.4 gi|298675105|ref|YP_003726855.1| - 0.0025 17.5 0.1 0.0025 17.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) TrmB PF01978.14 gi|298675106|ref|YP_003726856.1| - 1.4e-23 82.3 0.0 2.6e-23 81.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|298675106|ref|YP_003726856.1| - 0.0011 18.0 0.1 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_24 PF13412.1 gi|298675106|ref|YP_003726856.1| - 0.0014 17.9 0.4 0.011 15.0 0.0 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|298675106|ref|YP_003726856.1| - 0.0031 17.0 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|298675106|ref|YP_003726856.1| - 0.0084 15.8 0.0 0.022 14.4 0.0 1.8 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|298675106|ref|YP_003726856.1| - 0.037 14.1 0.0 0.093 12.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|298675106|ref|YP_003726856.1| - 0.054 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|298675107|ref|YP_003726857.1| - 1.4e-35 122.6 0.0 2.3e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675107|ref|YP_003726857.1| - 2.6e-15 57.1 1.5 1.7e-13 51.1 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|298675107|ref|YP_003726857.1| - 1.5e-06 28.6 1.6 2.9e-06 27.7 1.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675107|ref|YP_003726857.1| - 4.2e-05 23.6 0.2 0.00016 21.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|298675107|ref|YP_003726857.1| - 0.0001 21.7 0.1 0.00022 20.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|298675107|ref|YP_003726857.1| - 0.0004 19.5 1.7 0.12 11.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|298675107|ref|YP_003726857.1| - 0.00078 19.6 0.1 0.0058 16.8 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|298675107|ref|YP_003726857.1| - 0.0018 17.5 0.0 0.0042 16.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|298675107|ref|YP_003726857.1| - 0.0043 15.5 0.1 1.3 7.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|298675107|ref|YP_003726857.1| - 0.0055 15.4 0.0 0.0071 15.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|298675107|ref|YP_003726857.1| - 0.013 15.5 0.0 0.02 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|298675107|ref|YP_003726857.1| - 0.014 14.8 0.2 0.11 11.8 0.0 2.1 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|298675107|ref|YP_003726857.1| - 0.02 14.0 0.1 0.069 12.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|298675107|ref|YP_003726857.1| - 0.022 14.6 0.4 1.9 8.3 0.1 2.4 1 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|298675107|ref|YP_003726857.1| - 0.035 13.6 0.0 0.095 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|298675107|ref|YP_003726857.1| - 0.042 13.4 0.3 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|298675107|ref|YP_003726857.1| - 0.05 13.5 1.2 1.3 8.9 0.2 2.8 1 1 1 3 3 3 0 AAA domain SbcCD_C PF13558.1 gi|298675107|ref|YP_003726857.1| - 0.15 12.0 0.0 0.58 10.1 0.0 2.0 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit ABC2_membrane PF01061.19 gi|298675108|ref|YP_003726858.1| - 9.1e-40 136.0 15.8 9.1e-40 136.0 10.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|298675108|ref|YP_003726858.1| - 3.2e-18 65.8 28.0 5.3e-18 65.1 19.5 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675108|ref|YP_003726858.1| - 5.7e-07 28.9 24.1 7.6e-07 28.5 16.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298675108|ref|YP_003726858.1| - 2.2e-06 26.7 13.7 2.2e-06 26.7 9.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein MerC PF03203.9 gi|298675108|ref|YP_003726858.1| - 0.71 10.2 5.1 1.4 9.3 1.1 2.5 1 1 1 2 2 2 0 MerC mercury resistance protein FrhB_FdhB_C PF04432.8 gi|298675109|ref|YP_003726859.1| - 9.2e-41 138.9 0.0 2.1e-40 137.7 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.17 gi|298675109|ref|YP_003726859.1| - 2e-30 105.2 0.2 4e-30 104.2 0.2 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.8 gi|298675109|ref|YP_003726859.1| - 7.8e-23 80.1 0.0 1.5e-22 79.1 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|298675109|ref|YP_003726859.1| - 7.5e-17 60.1 39.4 2.5e-07 30.0 0.9 5.4 6 0 0 6 6 5 3 4Fe-4S binding domain NIR_SIR_ferr PF03460.12 gi|298675109|ref|YP_003726859.1| - 9e-13 47.6 0.0 2.3e-12 46.3 0.0 1.7 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_10 PF13237.1 gi|298675109|ref|YP_003726859.1| - 1.8e-11 43.6 36.2 1.6e-07 30.9 8.3 3.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675109|ref|YP_003726859.1| - 2.3e-10 39.8 20.7 1.4e-05 24.7 1.5 4.9 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675109|ref|YP_003726859.1| - 1.5e-09 38.0 36.3 1.5e-06 28.4 7.2 4.4 3 2 1 4 4 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675109|ref|YP_003726859.1| - 1.6e-08 34.6 34.8 0.00012 22.2 7.4 4.2 3 1 2 5 5 4 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298675109|ref|YP_003726859.1| - 2.2e-08 34.5 26.9 0.009 16.5 0.1 5.3 5 1 0 5 5 5 3 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|298675109|ref|YP_003726859.1| - 1.6e-07 31.0 27.6 0.0056 16.5 0.8 4.0 3 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675109|ref|YP_003726859.1| - 1.5e-06 28.1 27.1 0.0016 18.4 7.4 4.4 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675109|ref|YP_003726859.1| - 3e-05 23.6 23.6 0.00062 19.5 1.8 5.7 7 0 0 7 7 6 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298675109|ref|YP_003726859.1| - 0.00023 21.4 25.4 0.034 14.4 0.2 4.9 5 1 0 5 5 4 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298675109|ref|YP_003726859.1| - 0.0006 20.1 24.7 0.052 13.9 0.2 4.7 4 1 0 4 4 4 3 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|298675109|ref|YP_003726859.1| - 0.0015 19.1 29.7 0.29 11.9 0.4 5.2 5 1 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|298675109|ref|YP_003726859.1| - 0.02 15.1 2.5 0.02 15.1 1.8 5.8 7 0 0 7 7 5 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675109|ref|YP_003726859.1| - 0.047 14.1 0.4 0.047 14.1 0.3 4.4 4 1 0 4 4 3 0 4Fe-4S dicluster domain tRNA-synt_2 PF00152.15 gi|298675109|ref|YP_003726859.1| - 0.12 11.0 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class II (D, K and N) Fer4_11 PF13247.1 gi|298675109|ref|YP_003726859.1| - 0.31 10.9 15.8 0.62 9.9 0.8 3.2 4 0 0 4 4 2 0 4Fe-4S dicluster domain PTH2 PF01981.11 gi|298675110|ref|YP_003726860.1| - 5.4e-07 29.3 0.0 9.1e-07 28.5 0.0 1.3 1 1 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Ribosomal_S2 PF00318.15 gi|298675110|ref|YP_003726860.1| - 0.00091 18.4 0.1 0.0011 18.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S2 Methyltransf_11 PF08241.7 gi|298675111|ref|YP_003726861.1| - 2e-15 57.0 0.0 3.6e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298675111|ref|YP_003726861.1| - 2.2e-12 46.8 0.0 3.1e-11 43.0 0.0 2.1 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675111|ref|YP_003726861.1| - 1.3e-11 45.0 0.0 4.5e-11 43.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298675111|ref|YP_003726861.1| - 3.9e-10 40.0 0.0 7e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298675111|ref|YP_003726861.1| - 2.7e-09 36.4 0.0 1.3e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|298675111|ref|YP_003726861.1| - 3.2e-07 29.8 0.0 6.1e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|298675111|ref|YP_003726861.1| - 1e-06 29.1 0.0 1.6e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298675111|ref|YP_003726861.1| - 3.2e-06 26.9 0.0 4.6e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|298675111|ref|YP_003726861.1| - 2.6e-05 23.3 0.0 0.00012 21.1 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|298675111|ref|YP_003726861.1| - 8.3e-05 22.5 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|298675111|ref|YP_003726861.1| - 9.2e-05 23.2 0.0 0.00016 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_PK PF05891.7 gi|298675111|ref|YP_003726861.1| - 0.00049 19.4 0.0 0.00063 19.1 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase FmrO PF07091.6 gi|298675111|ref|YP_003726861.1| - 0.0093 14.9 0.0 0.019 13.9 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_15 PF09445.5 gi|298675111|ref|YP_003726861.1| - 0.012 15.1 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|298675111|ref|YP_003726861.1| - 0.038 13.1 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|298675111|ref|YP_003726861.1| - 0.063 12.2 0.0 0.099 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|298675111|ref|YP_003726861.1| - 0.064 12.8 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|298675111|ref|YP_003726861.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_16 PF10294.4 gi|298675111|ref|YP_003726861.1| - 0.073 12.5 0.0 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase DUF938 PF06080.7 gi|298675111|ref|YP_003726861.1| - 0.075 12.5 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Arch_ATPase PF01637.13 gi|298675112|ref|YP_003726862.1| - 1.3e-26 93.7 6.7 1.6e-26 93.4 1.9 2.8 2 1 0 2 2 2 1 Archaeal ATPase DUF234 PF03008.9 gi|298675112|ref|YP_003726862.1| - 5.3e-21 74.6 2.7 6.4e-21 74.3 0.3 2.3 2 1 0 2 2 2 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|298675112|ref|YP_003726862.1| - 3.4e-13 49.6 0.4 1.4e-12 47.5 0.3 2.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675112|ref|YP_003726862.1| - 1.1e-07 32.0 0.0 5e-07 29.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298675112|ref|YP_003726862.1| - 1e-05 25.5 0.0 0.00024 21.1 0.0 2.5 1 1 0 2 2 2 1 AAA ATPase domain Miro PF08477.8 gi|298675112|ref|YP_003726862.1| - 0.016 15.6 0.0 0.056 13.9 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein HTH_5 PF01022.15 gi|298675112|ref|YP_003726862.1| - 0.019 14.6 1.1 0.039 13.6 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HAD PF12710.2 gi|298675112|ref|YP_003726862.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase NosD PF05048.8 gi|298675114|ref|YP_003726864.1| - 1.6e-15 56.9 34.8 1.2e-06 27.8 10.1 3.3 1 1 1 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|298675114|ref|YP_003726864.1| - 8.4e-12 45.1 50.3 1.5e-07 31.3 11.1 3.4 1 1 2 3 3 3 2 Right handed beta helix region Pectinesterase PF01095.14 gi|298675114|ref|YP_003726864.1| - 0.00089 17.9 0.0 0.0016 17.1 0.0 1.4 1 0 0 1 1 1 1 Pectinesterase NTP_transf_2 PF01909.18 gi|298675115|ref|YP_003726865.1| - 2.7e-10 40.4 2.6 6.9e-10 39.1 1.8 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_cycl_N PF12633.2 gi|298675115|ref|YP_003726865.1| - 0.018 14.6 0.0 0.022 14.2 0.0 1.5 1 1 0 1 1 1 0 Adenylate cyclase NT domain DUF234 PF03008.9 gi|298675116|ref|YP_003726866.1| - 4.7e-30 103.6 4.6 6.9e-30 103.1 0.7 2.6 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function Arch_ATPase PF01637.13 gi|298675116|ref|YP_003726866.1| - 3.3e-27 95.6 2.5 4.1e-26 92.1 1.8 2.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|298675116|ref|YP_003726866.1| - 9.2e-09 35.2 0.3 5.2e-08 32.8 0.2 2.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675116|ref|YP_003726866.1| - 4.2e-07 30.1 0.0 1.4e-06 28.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain Mrr_cat PF04471.7 gi|298675116|ref|YP_003726866.1| - 1.7e-06 27.7 0.1 3.2e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 Restriction endonuclease HTH_45 PF14947.1 gi|298675116|ref|YP_003726866.1| - 0.0032 17.2 0.9 0.014 15.1 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DUF86 PF01934.12 gi|298675117|ref|YP_003726867.1| - 2.7e-18 65.7 0.7 3.3e-18 65.4 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|298675118|ref|YP_003726868.1| - 3.2e-18 65.8 0.8 3.5e-18 65.7 0.6 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|298675118|ref|YP_003726868.1| - 0.029 14.4 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm OrfB_IS605 PF01385.14 gi|298675120|ref|YP_003726870.1| - 2.9e-49 167.5 0.2 5.9e-49 166.5 0.1 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675120|ref|YP_003726870.1| - 1.9e-09 37.0 0.2 6.5e-09 35.3 0.1 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298675120|ref|YP_003726870.1| - 0.00051 19.6 0.3 0.0014 18.2 0.2 1.7 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298675120|ref|YP_003726870.1| - 0.033 14.2 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) OrfB_IS605 PF01385.14 gi|298675122|ref|YP_003726872.1| - 2.1e-50 171.2 0.4 2.1e-50 171.2 0.3 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675122|ref|YP_003726872.1| - 5.3e-10 38.8 0.6 2.5e-09 36.6 0.1 2.4 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298675122|ref|YP_003726872.1| - 0.0011 18.5 0.6 0.0031 17.1 0.4 1.8 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298675122|ref|YP_003726872.1| - 0.023 14.8 0.0 0.055 13.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) NTP_transf_2 PF01909.18 gi|298675123|ref|YP_003726873.1| - 1.8e-12 47.4 0.6 2.1e-12 47.1 0.4 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|298675123|ref|YP_003726873.1| - 0.014 15.4 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm Plasmid_stabil PF05016.9 gi|298675124|ref|YP_003726874.1| - 1.3e-10 41.5 0.1 1.5e-10 41.2 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|298675124|ref|YP_003726874.1| - 2.8e-05 24.0 0.0 3.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) SPOR PF05036.8 gi|298675124|ref|YP_003726874.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Sporulation related domain DUF4158 PF13700.1 gi|298675125|ref|YP_003726875.1| - 0.035 13.5 0.1 0.041 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) TPR_11 PF13414.1 gi|298675126|ref|YP_003726876.1| - 0.00029 20.4 0.7 0.0011 18.5 0.5 2.1 1 0 0 1 1 1 1 TPR repeat Apc3 PF12895.2 gi|298675126|ref|YP_003726876.1| - 0.0045 17.0 0.3 0.019 15.0 0.2 2.1 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 Syntaxin-6_N PF09177.6 gi|298675126|ref|YP_003726876.1| - 0.1 12.9 0.2 0.1 12.9 0.1 3.8 3 0 0 3 3 3 0 Syntaxin 6, N-terminal TPR_1 PF00515.23 gi|298675126|ref|YP_003726876.1| - 0.34 10.5 4.8 4 7.2 0.1 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat DEAD PF00270.24 gi|298675127|ref|YP_003726877.1| - 4.5e-20 71.8 0.0 1.7e-19 69.9 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|298675127|ref|YP_003726877.1| - 7e-15 55.3 0.1 7e-15 55.3 0.1 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|298675127|ref|YP_003726877.1| - 7.4e-10 38.9 0.0 2e-09 37.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|298675127|ref|YP_003726877.1| - 3.2e-09 36.5 0.0 9.1e-09 35.0 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain T2SE PF00437.15 gi|298675127|ref|YP_003726877.1| - 0.0026 16.7 0.0 0.0045 15.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein SNF2_N PF00176.18 gi|298675127|ref|YP_003726877.1| - 0.0046 15.7 0.0 0.0092 14.8 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain UvrD-helicase PF00580.16 gi|298675127|ref|YP_003726877.1| - 0.15 11.3 0.0 0.15 11.3 0.0 2.8 4 0 0 4 4 4 0 UvrD/REP helicase N-terminal domain DUF3236 PF11576.3 gi|298675127|ref|YP_003726877.1| - 0.72 9.2 1.9 0.94 8.8 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) AAA_30 PF13604.1 gi|298675127|ref|YP_003726877.1| - 0.86 9.1 0.0 1.8 8.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF262 PF03235.9 gi|298675128|ref|YP_003726878.1| - 3.5e-37 128.5 8.5 3.5e-37 128.5 5.9 3.3 2 1 0 2 2 2 1 Protein of unknown function DUF262 DUF1524 PF07510.6 gi|298675128|ref|YP_003726878.1| - 4.7e-29 101.0 5.2 4.7e-29 101.0 3.6 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1524) Glypican PF01153.14 gi|298675128|ref|YP_003726878.1| - 0.036 12.6 0.7 0.054 12.1 0.5 1.2 1 0 0 1 1 1 0 Glypican Antitoxin-MazE PF04014.13 gi|298675129|ref|YP_003726879.1| - 1.1e-09 37.7 0.1 1.5e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|298675129|ref|YP_003726879.1| - 0.055 13.2 0.1 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 MraZ protein DUF904 PF06005.7 gi|298675129|ref|YP_003726879.1| - 0.2 11.9 0.5 0.2 11.9 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF904) PemK PF02452.12 gi|298675130|ref|YP_003726880.1| - 2e-13 50.4 0.0 2.2e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein OrfB_Zn_ribbon PF07282.6 gi|298675131|ref|YP_003726881.1| - 1.3e-25 88.7 0.2 6e-25 86.7 0.0 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675131|ref|YP_003726881.1| - 1.5e-08 34.3 6.6 2.1e-08 33.8 4.6 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|298675131|ref|YP_003726881.1| - 0.002 17.7 4.6 0.052 13.2 0.1 3.0 3 1 0 4 4 4 1 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|298675131|ref|YP_003726881.1| - 0.021 14.5 5.4 0.13 11.9 1.4 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|298675131|ref|YP_003726881.1| - 0.067 13.0 0.4 0.067 13.0 0.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298675131|ref|YP_003726881.1| - 0.49 9.9 8.1 0.44 10.1 3.4 2.7 2 1 1 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|298675131|ref|YP_003726881.1| - 0.99 9.2 4.7 0.67 9.8 1.7 2.1 2 1 0 2 2 2 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|298675131|ref|YP_003726881.1| - 1.6 8.2 7.2 0.5 9.8 1.8 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|298675131|ref|YP_003726881.1| - 1.6 8.3 5.3 1.3 8.7 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298675131|ref|YP_003726881.1| - 2.5 7.8 5.3 1.6 8.5 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain IFT20 PF14931.1 gi|298675131|ref|YP_003726881.1| - 4.4 7.2 7.9 1 9.2 1.5 2.1 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 EF-hand_1 PF00036.27 gi|298675132|ref|YP_003726882.1| - 0.00052 19.1 1.0 0.0016 17.5 0.2 2.1 1 1 1 2 2 2 1 EF hand EF-hand_6 PF13405.1 gi|298675132|ref|YP_003726882.1| - 0.0039 16.9 0.2 0.034 14.0 0.0 2.4 1 1 1 2 2 2 1 EF-hand domain EF-hand_7 PF13499.1 gi|298675132|ref|YP_003726882.1| - 0.0093 16.0 0.1 0.023 14.8 0.0 1.6 1 1 1 2 2 2 1 EF-hand domain pair Big_1 PF02369.11 gi|298675132|ref|YP_003726882.1| - 0.037 13.9 1.7 0.065 13.1 1.2 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) DUF2393 PF09624.5 gi|298675132|ref|YP_003726882.1| - 0.11 12.0 1.1 0.12 11.8 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) C-term_anchor PF13461.1 gi|298675132|ref|YP_003726882.1| - 0.32 11.5 4.9 0.12 12.8 1.6 1.7 2 0 0 2 2 2 0 Cell-wall surface anchor repeat Mrr_cat PF04471.7 gi|298675133|ref|YP_003726883.1| - 7.1e-21 74.1 0.3 1.1e-20 73.4 0.2 1.3 1 0 0 1 1 1 1 Restriction endonuclease CAF1-p150_N PF15557.1 gi|298675133|ref|YP_003726883.1| - 0.016 14.5 0.4 0.022 14.0 0.3 1.2 1 0 0 1 1 1 0 CAF1 complex subunit p150, region binding to PCNA Mrr_cat PF04471.7 gi|298675134|ref|YP_003726884.1| - 1.1e-24 86.4 0.1 2.7e-24 85.1 0.0 1.7 1 0 0 1 1 1 1 Restriction endonuclease AMA-1 PF02430.10 gi|298675134|ref|YP_003726884.1| - 0.019 13.8 0.1 0.027 13.3 0.1 1.1 1 0 0 1 1 1 0 Apical membrane antigen 1 HEAT_2 PF13646.1 gi|298675134|ref|YP_003726884.1| - 0.023 14.9 0.4 10 6.4 0.0 3.5 2 1 0 2 2 2 0 HEAT repeats ArsC PF03960.10 gi|298675134|ref|YP_003726884.1| - 0.53 10.3 3.2 3.7 7.6 0.0 3.2 4 1 0 4 4 4 0 ArsC family NosD PF05048.8 gi|298675135|ref|YP_003726885.1| - 2.8e-68 229.5 121.0 2.1e-52 177.6 41.4 2.3 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|298675135|ref|YP_003726885.1| - 1.7e-22 79.8 108.9 5.2e-11 42.5 25.7 4.2 1 1 2 4 4 4 3 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|298675135|ref|YP_003726885.1| - 0.048 13.7 65.2 0.42 10.6 31.9 3.7 1 1 3 4 4 4 0 Pectate lyase superfamily protein Nitroreductase PF00881.19 gi|298675136|ref|YP_003726886.1| - 4.6e-17 62.3 0.0 2.3e-05 24.2 0.0 4.0 2 2 1 3 3 3 3 Nitroreductase family Abi PF02517.11 gi|298675137|ref|YP_003726887.1| - 1.7e-12 47.3 11.4 1.7e-12 47.3 7.9 2.7 2 1 1 3 3 3 1 CAAX protease self-immunity NIPSNAP PF07978.8 gi|298675138|ref|YP_003726888.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 NIPSNAP DUF2795 PF11387.3 gi|298675139|ref|YP_003726889.1| - 0.064 13.1 0.1 4.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) Fusion_gly PF00523.13 gi|298675139|ref|YP_003726889.1| - 0.13 10.2 0.1 0.15 10.1 0.0 1.0 1 0 0 1 1 1 0 Fusion glycoprotein F0 Plasmid_stabil PF05016.9 gi|298675140|ref|YP_003726890.1| - 2.1e-12 47.2 0.2 2.4e-12 47.0 0.1 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|298675140|ref|YP_003726890.1| - 2.7e-05 24.0 0.0 3.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) SPOR PF05036.8 gi|298675140|ref|YP_003726890.1| - 0.035 14.2 0.0 0.054 13.6 0.0 1.3 1 0 0 1 1 1 0 Sporulation related domain Plasmid_killer PF05015.8 gi|298675140|ref|YP_003726890.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Plasmid maintenance system killer protein DUF4158 PF13700.1 gi|298675141|ref|YP_003726891.1| - 0.035 13.5 0.1 0.041 13.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4158) Mrr_cat PF04471.7 gi|298675142|ref|YP_003726892.1| - 5.3e-23 81.0 0.7 9e-23 80.2 0.2 1.6 2 0 0 2 2 2 1 Restriction endonuclease BTB PF00651.26 gi|298675142|ref|YP_003726892.1| - 0.0054 16.7 0.5 0.69 9.9 0.0 2.5 2 0 0 2 2 2 2 BTB/POZ domain GTP-bdg_N PF13167.1 gi|298675142|ref|YP_003726892.1| - 0.045 13.8 4.1 0.053 13.6 0.2 2.6 1 1 2 3 3 3 0 GTP-binding GTPase N-terminal DRTGG PF07085.7 gi|298675142|ref|YP_003726892.1| - 0.066 12.8 0.2 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 DRTGG domain Mrr_cat PF04471.7 gi|298675143|ref|YP_003726893.1| - 1.9e-23 82.4 0.0 3.9e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 Restriction endonuclease Clathrin PF00637.15 gi|298675143|ref|YP_003726893.1| - 0.0077 15.8 2.0 0.02 14.5 1.4 1.7 1 0 0 1 1 1 1 Region in Clathrin and VPS AAA_16 PF13191.1 gi|298675146|ref|YP_003726896.1| - 7.5e-10 39.0 0.0 2.1e-09 37.6 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|298675146|ref|YP_003726896.1| - 2.1e-09 37.6 0.0 4.2e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298675146|ref|YP_003726896.1| - 1e-08 35.4 0.2 6.8e-08 32.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|298675146|ref|YP_003726896.1| - 2.7e-08 33.8 0.3 6e-08 32.6 0.1 1.6 1 1 0 1 1 1 1 Archaeal ATPase Cdc6_C PF09079.6 gi|298675146|ref|YP_003726896.1| - 4.9e-08 32.5 0.2 2.3e-07 30.4 0.1 2.3 2 1 1 3 3 2 1 CDC6, C terminal NACHT PF05729.7 gi|298675146|ref|YP_003726896.1| - 0.00011 21.8 0.0 0.0002 21.0 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.9 gi|298675146|ref|YP_003726896.1| - 0.00086 19.2 0.1 0.0021 18.0 0.1 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|298675146|ref|YP_003726896.1| - 0.0034 16.4 0.0 0.044 12.8 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|298675146|ref|YP_003726896.1| - 0.0042 17.2 0.3 0.58 10.3 0.0 2.7 1 1 1 2 2 2 1 RNA helicase DEAD PF00270.24 gi|298675146|ref|YP_003726896.1| - 0.0081 15.6 0.9 0.13 11.6 0.6 2.5 1 1 0 1 1 1 1 DEAD/DEAH box helicase UPF0079 PF02367.12 gi|298675146|ref|YP_003726896.1| - 0.011 15.3 0.3 0.61 9.7 0.0 2.4 1 1 1 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|298675146|ref|YP_003726896.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF2075 PF09848.4 gi|298675146|ref|YP_003726896.1| - 0.035 13.0 0.1 0.051 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|298675146|ref|YP_003726896.1| - 0.072 12.8 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|298675146|ref|YP_003726896.1| - 0.078 13.7 2.8 0.1 13.4 0.5 2.5 2 1 0 2 2 1 0 AAA domain DUF508 PF04370.7 gi|298675146|ref|YP_003726896.1| - 0.1 12.2 1.7 0.26 10.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF508) AAA_18 PF13238.1 gi|298675146|ref|YP_003726896.1| - 1.1 9.5 7.2 0.37 11.1 0.9 3.2 1 1 1 2 2 2 0 AAA domain Lyase_8_N PF08124.6 gi|298675147|ref|YP_003726897.1| - 0.022 13.6 3.2 0.024 13.5 2.2 1.0 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain BLOC1_2 PF10046.4 gi|298675147|ref|YP_003726897.1| - 0.094 12.8 2.6 0.11 12.6 1.8 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HTH_30 PF13556.1 gi|298675147|ref|YP_003726897.1| - 0.13 11.9 2.0 0.44 10.1 0.3 2.0 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain APG12 PF04110.8 gi|298675147|ref|YP_003726897.1| - 1.4 9.1 4.8 0.69 10.1 0.1 2.0 1 1 1 2 2 2 0 Ubiquitin-like autophagy protein Apg12 XhlA PF10779.4 gi|298675147|ref|YP_003726897.1| - 1.8 8.5 5.5 4.3 7.3 3.8 1.6 1 1 0 1 1 1 0 Haemolysin XhlA GLE1 PF07817.8 gi|298675147|ref|YP_003726897.1| - 3 6.7 7.0 3.1 6.6 4.9 1.0 1 0 0 1 1 1 0 GLE1-like protein TPR_11 PF13414.1 gi|298675148|ref|YP_003726898.1| - 2.9e-60 199.8 40.5 1.2e-10 40.8 0.7 12.6 6 4 5 13 13 13 10 TPR repeat TPR_2 PF07719.12 gi|298675148|ref|YP_003726898.1| - 1.8e-55 180.4 35.8 7e-06 25.5 0.0 19.2 19 1 1 20 20 19 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|298675148|ref|YP_003726898.1| - 5.6e-49 163.8 0.1 2.4e-05 24.8 0.0 11.8 7 3 5 13 13 13 11 Tetratricopeptide repeat TPR_1 PF00515.23 gi|298675148|ref|YP_003726898.1| - 1.5e-46 154.1 55.6 1.2e-05 24.6 0.0 19.2 21 0 0 21 21 20 11 Tetratricopeptide repeat TPR_19 PF14559.1 gi|298675148|ref|YP_003726898.1| - 1.2e-38 131.3 23.4 7.2e-05 23.0 0.0 12.5 7 2 6 13 13 13 10 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298675148|ref|YP_003726898.1| - 3.1e-38 126.7 7.1 0.0026 18.2 0.0 16.7 5 4 14 19 19 18 8 Tetratricopeptide repeat TPR_12 PF13424.1 gi|298675148|ref|YP_003726898.1| - 2.6e-35 120.1 25.8 9.2e-06 25.5 0.1 12.0 5 3 10 15 15 15 13 Tetratricopeptide repeat TPR_8 PF13181.1 gi|298675148|ref|YP_003726898.1| - 6.5e-32 106.9 60.9 0.0001 21.8 0.0 18.5 17 4 4 21 21 18 10 Tetratricopeptide repeat TPR_9 PF13371.1 gi|298675148|ref|YP_003726898.1| - 4.2e-29 100.2 0.0 0.00016 21.4 0.0 11.1 8 3 4 12 12 12 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|298675148|ref|YP_003726898.1| - 1.9e-25 89.6 18.8 0.0004 19.2 0.0 9.3 4 2 6 10 10 10 8 NMDA receptor-regulated protein 1 Apc3 PF12895.2 gi|298675148|ref|YP_003726898.1| - 3.8e-25 87.8 29.6 6.8e-06 26.1 0.1 9.2 3 1 5 9 9 9 7 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|298675148|ref|YP_003726898.1| - 6.7e-21 72.6 37.2 0.062 13.5 0.0 16.5 18 1 1 19 19 16 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|298675148|ref|YP_003726898.1| - 6.3e-18 63.0 18.1 0.0059 16.3 0.0 12.9 14 1 1 15 15 12 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|298675148|ref|YP_003726898.1| - 7.9e-16 57.3 8.6 0.74 10.4 0.0 13.5 15 0 0 15 15 14 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|298675148|ref|YP_003726898.1| - 6.7e-15 54.8 19.9 0.0071 15.4 0.1 8.4 2 2 7 9 9 9 8 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|298675148|ref|YP_003726898.1| - 4.4e-10 39.2 12.1 0.04 13.8 0.0 10.8 12 1 1 13 13 12 2 Fis1 C-terminal tetratricopeptide repeat TPR_20 PF14561.1 gi|298675148|ref|YP_003726898.1| - 5.5e-06 26.4 13.8 10 6.3 0.0 8.6 5 3 4 9 9 9 0 Tetratricopeptide repeat TPR_21 PF09976.4 gi|298675148|ref|YP_003726898.1| - 0.00025 21.0 8.4 1.8 8.4 0.1 5.6 5 1 1 6 6 6 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|298675148|ref|YP_003726898.1| - 0.0003 20.5 0.0 6.9 6.7 0.0 6.8 8 0 0 8 8 6 0 Tetratricopeptide repeat ChAPs PF09295.5 gi|298675148|ref|YP_003726898.1| - 0.00033 19.5 14.9 1.3 7.7 0.2 5.3 4 2 2 6 6 6 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_4 PF07721.9 gi|298675148|ref|YP_003726898.1| - 0.00069 19.8 0.0 4.6 7.9 0.0 5.1 6 0 0 6 6 4 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|298675148|ref|YP_003726898.1| - 0.0015 18.5 0.7 24 4.9 0.0 5.7 5 1 3 8 8 8 0 Tetratrico peptide repeat PPR PF01535.15 gi|298675148|ref|YP_003726898.1| - 0.0063 16.4 12.8 45 4.3 0.1 9.1 11 0 0 11 11 9 0 PPR repeat DUF357 PF04010.8 gi|298675148|ref|YP_003726898.1| - 0.011 15.3 1.4 0.075 12.7 0.1 3.1 2 1 0 2 2 1 0 Protein of unknown function (DUF357) SPOB_a PF14689.1 gi|298675148|ref|YP_003726898.1| - 0.073 12.6 10.8 2.3 7.8 0.0 6.4 8 0 0 8 8 5 0 Sensor_kinase_SpoOB-type, alpha-helical domain Type_III_YscG PF09477.5 gi|298675148|ref|YP_003726898.1| - 0.085 12.9 1.8 22 5.1 0.0 4.1 4 0 0 4 4 3 0 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_2 PF07719.12 gi|298675150|ref|YP_003726900.1| - 2.4e-15 55.1 0.3 0.011 15.6 0.1 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_11 PF13414.1 gi|298675150|ref|YP_003726900.1| - 1.4e-14 53.4 1.0 1.7e-05 24.3 0.1 3.8 2 1 1 4 4 4 3 TPR repeat TPR_1 PF00515.23 gi|298675150|ref|YP_003726900.1| - 2.6e-14 52.1 0.2 0.0017 17.9 0.1 4.9 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|298675150|ref|YP_003726900.1| - 1.4e-11 44.6 0.3 0.00067 20.2 0.0 3.7 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|298675150|ref|YP_003726900.1| - 2.8e-11 42.3 0.1 0.077 12.8 0.0 4.7 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298675150|ref|YP_003726900.1| - 2.7e-10 39.9 0.1 0.015 15.8 0.0 5.1 3 1 2 5 5 5 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|298675150|ref|YP_003726900.1| - 1.1e-09 38.1 0.4 0.004 17.0 0.0 3.7 1 1 3 4 4 4 4 Tetratricopeptide repeat NARP1 PF12569.3 gi|298675150|ref|YP_003726900.1| - 2.6e-08 33.0 0.1 0.00054 18.8 0.0 2.1 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 TPR_19 PF14559.1 gi|298675150|ref|YP_003726900.1| - 4.1e-08 33.4 0.3 0.00018 21.7 0.0 3.8 3 1 1 4 4 4 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|298675150|ref|YP_003726900.1| - 1.5e-06 28.2 0.1 0.0022 18.1 0.1 2.4 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|298675150|ref|YP_003726900.1| - 5.1e-06 26.2 0.9 0.0077 16.0 0.3 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|298675150|ref|YP_003726900.1| - 8e-06 25.2 0.8 0.081 12.7 0.0 4.8 5 1 1 6 6 6 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|298675150|ref|YP_003726900.1| - 3e-05 24.1 0.2 9 7.0 0.0 4.8 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|298675150|ref|YP_003726900.1| - 0.00012 21.9 0.0 2 8.8 0.0 4.6 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|298675150|ref|YP_003726900.1| - 0.00023 21.3 0.0 21 5.9 0.0 4.3 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR PF01535.15 gi|298675150|ref|YP_003726900.1| - 0.00037 20.2 0.5 0.22 11.5 0.0 4.4 4 1 1 5 5 5 1 PPR repeat PPR_2 PF13041.1 gi|298675150|ref|YP_003726900.1| - 0.0032 17.4 0.0 0.53 10.3 0.0 2.8 2 0 0 2 2 2 1 PPR repeat family Type_III_YscG PF09477.5 gi|298675150|ref|YP_003726900.1| - 0.0034 17.4 0.0 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_10 PF13374.1 gi|298675150|ref|YP_003726900.1| - 0.047 13.6 1.8 0.86 9.6 0.0 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|298675150|ref|YP_003726900.1| - 0.06 12.5 0.1 0.96 8.5 0.0 2.5 1 1 2 3 3 3 0 Coatomer epsilon subunit TPR_15 PF13429.1 gi|298675150|ref|YP_003726900.1| - 0.087 11.8 0.1 7 5.6 0.0 2.5 1 1 1 2 2 2 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|298675150|ref|YP_003726900.1| - 0.091 12.0 0.2 0.86 8.9 0.0 2.4 2 0 0 2 2 2 0 SHNi-TPR TPR_16 PF13432.1 gi|298675151|ref|YP_003726901.1| - 3.2e-11 43.5 0.0 1.7e-05 25.3 0.0 2.7 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|298675151|ref|YP_003726901.1| - 7.6e-11 41.4 6.2 1.7e-07 30.7 0.2 3.9 1 1 1 4 4 4 2 TPR repeat TPR_2 PF07719.12 gi|298675151|ref|YP_003726901.1| - 1e-09 37.5 6.4 0.14 12.0 0.0 5.6 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|298675151|ref|YP_003726901.1| - 2e-09 37.6 1.5 0.00055 20.2 0.3 2.8 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|298675151|ref|YP_003726901.1| - 2.5e-07 29.9 10.9 0.0049 16.4 0.1 5.2 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|298675151|ref|YP_003726901.1| - 3.8e-07 29.9 4.2 0.019 14.9 0.1 3.7 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298675151|ref|YP_003726901.1| - 9.5e-07 28.9 0.6 3.1 8.6 0.1 4.7 1 1 4 5 5 5 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|298675151|ref|YP_003726901.1| - 6.6e-06 25.1 0.6 0.053 12.2 0.0 2.4 1 1 0 2 2 2 2 NMDA receptor-regulated protein 1 TPR_8 PF13181.1 gi|298675151|ref|YP_003726901.1| - 1.4e-05 24.5 11.5 0.27 11.0 0.2 5.3 4 1 1 5 5 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|298675151|ref|YP_003726901.1| - 2.9e-05 24.1 0.3 0.46 10.6 0.0 2.6 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_17 PF13431.1 gi|298675151|ref|YP_003726901.1| - 0.00084 19.3 2.6 0.56 10.5 0.0 4.5 4 0 0 4 4 4 1 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|298675151|ref|YP_003726901.1| - 0.0057 16.5 3.6 0.051 13.4 0.2 3.5 3 1 1 4 4 3 1 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.1 gi|298675151|ref|YP_003726901.1| - 0.0083 15.9 0.1 0.38 10.6 0.0 2.7 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|298675151|ref|YP_003726901.1| - 0.037 13.8 0.4 33 4.6 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat Clathrin PF00637.15 gi|298675151|ref|YP_003726901.1| - 0.066 12.8 3.0 7.5 6.1 0.1 3.0 1 1 2 3 3 3 0 Region in Clathrin and VPS TPR_20 PF14561.1 gi|298675151|ref|YP_003726901.1| - 0.096 12.8 0.5 3.3 7.8 0.1 3.1 1 1 1 3 3 3 0 Tetratricopeptide repeat Type_III_YscG PF09477.5 gi|298675151|ref|YP_003726901.1| - 0.1 12.6 0.1 5 7.2 0.0 2.2 1 1 1 2 2 2 0 Bacterial type II secretion system chaperone protein (type_III_yscG) Tropomyosin_1 PF12718.2 gi|298675151|ref|YP_003726901.1| - 1.6 8.6 6.9 7.7 6.3 3.7 2.3 1 1 1 2 2 2 0 Tropomyosin like Polysacc_synt PF01943.12 gi|298675153|ref|YP_003726903.1| - 9e-27 94.0 20.2 9e-27 94.0 14.0 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|298675153|ref|YP_003726903.1| - 1.9e-21 76.7 16.5 1.9e-21 76.7 11.4 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|298675153|ref|YP_003726903.1| - 2.9e-17 62.8 55.0 1.1e-16 60.9 20.7 3.5 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|298675153|ref|YP_003726903.1| - 6.2e-09 35.6 6.6 6.2e-09 35.6 4.6 4.0 3 2 1 4 4 4 1 MatE MVIN PF03023.9 gi|298675153|ref|YP_003726903.1| - 2.3e-05 23.0 33.9 0.0015 17.0 23.7 2.6 1 1 0 1 1 1 1 MviN-like protein MannoseP_isomer PF01050.13 gi|298675154|ref|YP_003726904.1| - 3.8e-62 208.3 1.4 6.2e-62 207.6 1.0 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.18 gi|298675154|ref|YP_003726904.1| - 2e-53 181.2 0.0 3.9e-53 180.2 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyl transferase Cupin_2 PF07883.6 gi|298675154|ref|YP_003726904.1| - 1.5e-12 46.7 0.1 3.1e-12 45.8 0.1 1.6 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|298675154|ref|YP_003726904.1| - 2e-06 27.9 0.0 3.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain AraC_binding PF02311.14 gi|298675154|ref|YP_003726904.1| - 0.0063 16.2 0.1 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain IspD PF01128.14 gi|298675154|ref|YP_003726904.1| - 0.013 14.9 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF772 PF05598.6 gi|298675155|ref|YP_003726905.1| - 1.2e-19 69.9 0.1 2.2e-19 69.1 0.1 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|298675155|ref|YP_003726905.1| - 7.7e-11 41.9 1.9 3.2e-10 39.9 1.3 2.0 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|298675155|ref|YP_003726905.1| - 0.0013 18.5 0.3 0.0036 17.0 0.1 1.7 1 1 1 2 2 2 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|298675155|ref|YP_003726905.1| - 0.0075 15.8 0.3 0.022 14.3 0.2 1.8 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_6 PF13751.1 gi|298675155|ref|YP_003726905.1| - 0.018 15.0 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain Imm35 PF15581.1 gi|298675155|ref|YP_003726905.1| - 0.11 12.5 0.0 0.71 9.9 0.0 2.1 2 0 0 2 2 2 0 Immunity protein 35 Sulfotransfer_1 PF00685.22 gi|298675156|ref|YP_003726906.1| - 0.0039 16.4 1.1 0.048 12.9 0.8 2.4 1 1 0 1 1 1 1 Sulfotransferase domain ESCRT-II PF05871.7 gi|298675156|ref|YP_003726906.1| - 0.021 14.7 3.5 0.042 13.7 0.3 2.2 1 1 1 2 2 2 0 ESCRT-II complex subunit Sulphotransf PF09037.5 gi|298675156|ref|YP_003726906.1| - 0.024 14.1 0.0 0.31 10.4 0.0 2.2 2 0 0 2 2 2 0 Stf0 sulphotransferase Glycos_transf_1 PF00534.15 gi|298675157|ref|YP_003726907.1| - 1.9e-40 138.1 0.1 3e-40 137.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|298675157|ref|YP_003726907.1| - 1.2e-15 57.8 0.0 2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|298675157|ref|YP_003726907.1| - 7.6e-06 26.1 0.0 1.2e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|298675157|ref|YP_003726907.1| - 0.00021 21.0 0.0 0.00034 20.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF2315 PF10231.4 gi|298675158|ref|YP_003726908.1| - 0.31 10.9 4.3 0.73 9.7 3.0 1.8 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2315) PMT_2 PF13231.1 gi|298675159|ref|YP_003726909.1| - 6e-14 52.2 19.3 6e-14 52.2 13.3 3.1 3 1 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EmrE PF13536.1 gi|298675159|ref|YP_003726909.1| - 0.0019 18.3 15.5 0.0019 18.3 10.7 3.6 2 1 0 2 2 2 1 Multidrug resistance efflux transporter UPF0104 PF03706.8 gi|298675160|ref|YP_003726910.1| - 2e-42 145.4 29.6 2.6e-42 145.1 20.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) PSI_PsaJ PF01701.13 gi|298675160|ref|YP_003726910.1| - 0.085 12.6 1.9 2.3 8.0 0.0 3.3 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ PHP PF02811.14 gi|298675161|ref|YP_003726911.1| - 1.1e-16 61.1 0.2 1e-15 57.9 0.1 2.1 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|298675161|ref|YP_003726911.1| - 2.8e-15 55.5 0.0 1.6e-14 53.1 0.0 2.1 2 0 0 2 2 2 1 PHP-associated TK PF00265.13 gi|298675161|ref|YP_003726911.1| - 0.05 13.1 0.2 0.29 10.6 0.0 2.0 2 0 0 2 2 2 0 Thymidine kinase UbiA PF01040.13 gi|298675162|ref|YP_003726912.1| - 2.6e-25 89.1 20.3 2.6e-25 89.1 14.1 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF362 PF04015.7 gi|298675163|ref|YP_003726913.1| - 2e-30 105.8 0.0 2.6e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Glycos_transf_1 PF00534.15 gi|298675164|ref|YP_003726914.1| - 1.3e-37 128.8 2.8 5.5e-37 126.8 0.9 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|298675164|ref|YP_003726914.1| - 6.1e-14 52.3 0.0 1.3e-13 51.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|298675164|ref|YP_003726914.1| - 1.1e-08 35.0 0.0 1.1e-07 31.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|298675164|ref|YP_003726914.1| - 5.3e-05 23.4 0.0 7.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|298675164|ref|YP_003726914.1| - 0.0012 19.0 0.1 0.0036 17.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 DUF3298 PF11738.3 gi|298675164|ref|YP_003726914.1| - 0.091 13.2 0.4 0.31 11.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3298) Epimerase PF01370.16 gi|298675165|ref|YP_003726915.1| - 1e-48 165.8 0.0 1.3e-48 165.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|298675165|ref|YP_003726915.1| - 2.4e-17 62.5 0.2 5.4e-17 61.3 0.1 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|298675165|ref|YP_003726915.1| - 1e-15 57.4 0.0 4.1e-15 55.4 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|298675165|ref|YP_003726915.1| - 4.4e-10 38.9 0.1 1.4e-09 37.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|298675165|ref|YP_003726915.1| - 5e-09 35.4 0.0 7.5e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|298675165|ref|YP_003726915.1| - 0.00017 21.6 0.0 0.31 11.0 0.0 2.2 2 0 0 2 2 2 2 NADH(P)-binding Epimerase_Csub PF13950.1 gi|298675165|ref|YP_003726915.1| - 0.0035 17.2 0.0 0.0071 16.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit Glycos_transf_1 PF00534.15 gi|298675166|ref|YP_003726916.1| - 1.7e-36 125.2 1.4 4.6e-36 123.8 0.3 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|298675166|ref|YP_003726916.1| - 4e-14 52.9 0.0 6.8e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|298675166|ref|YP_003726916.1| - 7.6e-08 32.2 0.0 3.9e-07 29.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|298675166|ref|YP_003726916.1| - 2.1e-05 24.6 0.0 6.9e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|298675166|ref|YP_003726916.1| - 0.00018 21.6 0.0 0.00026 21.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF3298 PF11738.3 gi|298675166|ref|YP_003726916.1| - 0.046 14.2 0.2 0.22 12.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3298) Epimerase PF01370.16 gi|298675167|ref|YP_003726917.1| - 1e-44 152.7 0.0 1.3e-44 152.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|298675167|ref|YP_003726917.1| - 4e-20 71.6 0.2 4.7e-20 71.4 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|298675167|ref|YP_003726917.1| - 1.9e-17 63.0 0.1 2.5e-16 59.4 0.1 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|298675167|ref|YP_003726917.1| - 3.2e-15 55.7 0.0 3.9e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|298675167|ref|YP_003726917.1| - 1.7e-11 43.4 0.0 1.7e-09 37.0 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|298675167|ref|YP_003726917.1| - 3.7e-06 27.0 0.0 7.7e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|298675167|ref|YP_003726917.1| - 0.00026 20.3 0.1 0.13 11.4 0.0 2.2 2 0 0 2 2 2 2 NmrA-like family Saccharop_dh PF03435.13 gi|298675167|ref|YP_003726917.1| - 0.0071 15.3 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|298675167|ref|YP_003726917.1| - 0.017 15.0 0.0 0.067 13.0 0.0 1.9 1 1 0 1 1 1 0 short chain dehydrogenase Tox-SGS PF15651.1 gi|298675167|ref|YP_003726917.1| - 0.12 12.1 0.1 0.87 9.3 0.0 2.3 3 0 0 3 3 3 0 Salivary glad secreted protein domain toxin Lipase_GDSL_3 PF14606.1 gi|298675167|ref|YP_003726917.1| - 0.18 11.4 1.4 0.89 9.2 0.3 2.3 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Glycos_transf_1 PF00534.15 gi|298675168|ref|YP_003726918.1| - 1.5e-40 138.4 0.4 2.5e-40 137.7 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|298675168|ref|YP_003726918.1| - 6.1e-18 65.2 0.0 1e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|298675168|ref|YP_003726918.1| - 1.7e-08 34.6 0.0 4.5e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|298675168|ref|YP_003726918.1| - 0.0042 16.8 0.3 0.011 15.5 0.2 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|298675168|ref|YP_003726918.1| - 0.0054 16.5 10.7 0.043 13.6 3.6 3.2 1 1 1 2 2 2 1 Glycosyl transferase 4-like PMBR PF09373.5 gi|298675169|ref|YP_003726919.1| - 0.0064 16.3 0.1 0.071 13.0 0.0 2.6 2 0 0 2 2 2 1 Pseudomurein-binding repeat Sulfotransfer_1 PF00685.22 gi|298675169|ref|YP_003726919.1| - 0.015 14.5 2.8 0.26 10.4 1.9 2.2 1 1 0 1 1 1 0 Sulfotransferase domain STT3 PF02516.9 gi|298675170|ref|YP_003726920.1| - 9e-27 94.1 33.9 9e-27 94.1 23.5 2.2 2 1 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit Big_3_4 PF13754.1 gi|298675170|ref|YP_003726920.1| - 0.32 11.3 3.8 0.2 11.9 0.7 2.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) NTP_transf_2 PF01909.18 gi|298675171|ref|YP_003726921.1| - 1.7e-13 50.7 1.0 1.9e-13 50.5 0.7 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|298675171|ref|YP_003726921.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF86 PF01934.12 gi|298675172|ref|YP_003726922.1| - 7e-14 51.5 0.2 9.4e-14 51.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 RRXRR PF14239.1 gi|298675173|ref|YP_003726923.1| - 2.6e-66 222.3 3.1 3.7e-66 221.8 2.2 1.2 1 0 0 1 1 1 1 RRXRR protein HNH PF01844.18 gi|298675173|ref|YP_003726923.1| - 1.8e-12 46.8 1.8 1.8e-12 46.8 1.3 2.1 2 0 0 2 2 2 1 HNH endonuclease HNH_4 PF13395.1 gi|298675173|ref|YP_003726923.1| - 1.3e-11 43.9 0.1 3.4e-11 42.5 0.0 1.7 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.1 gi|298675173|ref|YP_003726923.1| - 0.0012 18.8 0.5 0.0022 17.9 0.3 1.4 1 0 0 1 1 1 1 HNH endonuclease PEPcase_2 PF14010.1 gi|298675174|ref|YP_003726924.1| - 4.3e-146 487.0 0.2 4.8e-146 486.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|298675174|ref|YP_003726924.1| - 1.6e-07 29.6 0.0 2.7e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PLC-beta_C PF08703.5 gi|298675174|ref|YP_003726924.1| - 0.034 13.8 0.1 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 PLC-beta C terminal CGGC PF08821.6 gi|298675175|ref|YP_003726925.1| - 5.5e-11 42.4 0.0 5.5e-11 42.4 0.0 1.0 1 0 0 1 1 1 1 CGGC domain DUF2162 PF09930.4 gi|298675176|ref|YP_003726926.1| - 5.8e-68 228.3 22.7 6.7e-68 228.1 15.7 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF4022 PF13214.1 gi|298675176|ref|YP_003726926.1| - 5.2 7.2 18.4 0.98 9.5 0.5 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF4022) MotA_ExbB PF01618.11 gi|298675177|ref|YP_003726927.1| - 2.3e-11 43.5 0.1 3.4e-11 42.9 0.1 1.3 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family VIT1 PF01988.14 gi|298675177|ref|YP_003726927.1| - 9.2e-06 25.2 3.7 1.3e-05 24.7 1.4 1.7 1 1 1 2 2 2 1 VIT family DUF4363 PF14276.1 gi|298675177|ref|YP_003726927.1| - 0.0013 18.4 0.8 0.0026 17.4 0.3 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4363) Spore_III_AB PF09548.5 gi|298675177|ref|YP_003726927.1| - 0.068 12.9 0.2 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) Colicin_V PF02674.11 gi|298675177|ref|YP_003726927.1| - 0.069 13.0 4.1 0.87 9.4 0.2 2.2 2 0 0 2 2 2 0 Colicin V production protein HHH_8 PF14716.1 gi|298675177|ref|YP_003726927.1| - 0.084 13.0 0.2 0.17 12.0 0.1 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix domain OppC_N PF12911.2 gi|298675177|ref|YP_003726927.1| - 0.23 10.8 1.8 1.7 8.1 0.0 3.0 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF2149 PF09919.4 gi|298675178|ref|YP_003726928.1| - 4.8e-34 116.3 0.2 5.6e-34 116.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2149) DUF3982 PF13138.1 gi|298675178|ref|YP_003726928.1| - 0.04 13.7 0.1 0.06 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3982) CobN-Mg_chel PF02514.11 gi|298675179|ref|YP_003726929.1| - 0 1296.9 15.3 0 1295.2 2.2 2.9 2 1 1 3 3 3 3 CobN/Magnesium Chelatase Peptidase_S8 PF00082.17 gi|298675180|ref|YP_003726930.1| - 1.2e-48 165.7 8.5 1.2e-48 165.7 5.9 2.3 2 0 0 2 2 2 1 Subtilase family Big_2 PF02368.13 gi|298675180|ref|YP_003726930.1| - 1.5e-21 76.0 54.6 1.2e-07 31.4 7.2 6.2 6 0 0 6 6 6 4 Bacterial Ig-like domain (group 2) T3SS_LEE_assoc PF13327.1 gi|298675180|ref|YP_003726930.1| - 0.39 10.2 0.1 0.69 9.4 0.1 1.3 1 0 0 1 1 1 0 Type III secretion system subunit DUF1628 PF07790.6 gi|298675182|ref|YP_003726932.1| - 2.5e-11 44.1 3.8 3.4e-11 43.7 2.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) Lactamase_B PF00753.22 gi|298675183|ref|YP_003726933.1| - 1.5e-13 50.8 0.0 1.9e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|298675183|ref|YP_003726933.1| - 4.6e-05 23.0 0.4 5e-05 22.9 0.3 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|298675183|ref|YP_003726933.1| - 0.0087 15.7 0.0 0.016 14.8 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Fe_dep_repress PF01325.14 gi|298675184|ref|YP_003726934.1| - 5.8e-23 80.6 0.3 8e-23 80.1 0.2 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|298675184|ref|YP_003726934.1| - 7.5e-14 51.1 0.1 3.8e-13 48.9 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|298675184|ref|YP_003726934.1| - 5.7e-06 26.5 0.0 1.1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|298675184|ref|YP_003726934.1| - 2.2e-05 24.0 0.0 3.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|298675184|ref|YP_003726934.1| - 5.1e-05 22.8 0.0 8.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|298675184|ref|YP_003726934.1| - 0.00043 19.6 0.0 0.00064 19.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|298675184|ref|YP_003726934.1| - 0.0048 16.5 0.1 0.0078 15.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|298675184|ref|YP_003726934.1| - 0.04 13.3 0.1 0.26 10.7 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|298675184|ref|YP_003726934.1| - 0.095 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator FeoC PF09012.5 gi|298675184|ref|YP_003726934.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator FeoC PF09012.5 gi|298675185|ref|YP_003726935.1| - 1.5e-06 27.7 1.3 1.9e-06 27.4 0.9 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|298675185|ref|YP_003726935.1| - 7.3e-05 22.2 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.9 gi|298675185|ref|YP_003726935.1| - 0.00044 19.9 0.1 0.0018 17.9 0.1 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|298675185|ref|YP_003726935.1| - 0.00075 18.8 0.0 0.00099 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|298675185|ref|YP_003726935.1| - 0.0023 17.6 0.1 0.0031 17.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|298675185|ref|YP_003726935.1| - 0.01 15.6 1.5 0.29 10.9 1.1 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|298675185|ref|YP_003726935.1| - 0.01 15.4 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|298675185|ref|YP_003726935.1| - 0.011 15.8 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator RPA_C PF08784.6 gi|298675185|ref|YP_003726935.1| - 0.016 15.6 0.1 0.021 15.2 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HTH_34 PF13601.1 gi|298675185|ref|YP_003726935.1| - 0.019 14.9 0.4 0.12 12.4 0.3 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF2703 PF10865.3 gi|298675185|ref|YP_003726935.1| - 0.055 13.4 0.3 0.057 13.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2703) TrmB PF01978.14 gi|298675185|ref|YP_003726935.1| - 0.056 13.1 0.0 0.074 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RseC_MucC PF04246.7 gi|298675185|ref|YP_003726935.1| - 0.13 11.8 0.8 0.17 11.4 0.6 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC P12 PF12669.2 gi|298675185|ref|YP_003726935.1| - 0.13 12.4 3.6 0.17 12.1 2.5 1.2 1 0 0 1 1 1 0 Virus attachment protein p12 family zf-NADH-PPase PF09297.6 gi|298675185|ref|YP_003726935.1| - 0.19 11.3 5.6 0.59 9.6 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|298675185|ref|YP_003726935.1| - 0.9 9.1 5.7 8.4 6.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cation_ATPase_C PF00689.16 gi|298675186|ref|YP_003726936.1| - 0.7 9.4 4.3 1 8.8 3.0 1.3 1 1 0 1 1 1 0 Cation transporting ATPase, C-terminus FeoA PF04023.9 gi|298675187|ref|YP_003726937.1| - 5.5e-11 42.2 1.0 6.5e-11 42.0 0.7 1.1 1 0 0 1 1 1 1 FeoA domain CbiG_N PF11760.3 gi|298675187|ref|YP_003726937.1| - 0.14 11.9 0.2 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal FeoA PF04023.9 gi|298675188|ref|YP_003726938.1| - 2.2e-12 46.7 0.8 2.4e-12 46.6 0.5 1.0 1 0 0 1 1 1 1 FeoA domain DUF1967 PF09269.6 gi|298675188|ref|YP_003726938.1| - 0.0048 16.5 0.5 0.09 12.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1967) Orn_Arg_deC_N PF02784.11 gi|298675188|ref|YP_003726938.1| - 0.09 11.9 0.0 0.092 11.9 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABC2_membrane PF01061.19 gi|298675189|ref|YP_003726939.1| - 2.8e-23 82.1 20.3 2.8e-23 82.1 14.1 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|298675189|ref|YP_003726939.1| - 1.8e-12 46.9 42.5 9.9e-12 44.5 29.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298675189|ref|YP_003726939.1| - 2.3e-07 29.9 24.4 9.4e-06 24.6 16.9 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675189|ref|YP_003726939.1| - 0.00011 21.4 35.9 0.00015 21.0 24.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|298675189|ref|YP_003726939.1| - 0.00076 18.7 12.5 0.00076 18.7 8.6 1.6 1 1 1 2 2 2 1 CcmB protein ABC_tran PF00005.22 gi|298675190|ref|YP_003726940.1| - 5.6e-32 110.8 0.0 9.8e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675190|ref|YP_003726940.1| - 1.4e-15 58.0 4.6 5.4e-14 52.8 0.4 2.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|298675190|ref|YP_003726940.1| - 5.8e-05 22.3 5.7 0.0019 17.3 0.0 2.7 2 1 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|298675190|ref|YP_003726940.1| - 0.00016 22.0 6.8 0.00057 20.2 4.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|298675190|ref|YP_003726940.1| - 0.00024 20.5 0.0 0.0006 19.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|298675190|ref|YP_003726940.1| - 0.00056 19.2 1.2 0.013 14.6 0.5 2.6 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|298675190|ref|YP_003726940.1| - 0.0012 19.0 0.9 0.019 15.1 0.6 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|298675190|ref|YP_003726940.1| - 0.0016 18.1 0.4 1.8 8.2 0.0 2.4 2 0 0 2 2 2 2 NTPase AAA_19 PF13245.1 gi|298675190|ref|YP_003726940.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|298675190|ref|YP_003726940.1| - 0.047 13.1 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|298675190|ref|YP_003726940.1| - 0.065 13.3 0.5 0.52 10.4 0.3 2.1 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|298675190|ref|YP_003726940.1| - 0.067 12.3 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Gtr1_RagA PF04670.7 gi|298675190|ref|YP_003726940.1| - 0.068 12.3 0.2 0.15 11.2 0.0 1.6 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Mg_chelatase PF01078.16 gi|298675190|ref|YP_003726940.1| - 0.092 11.8 0.0 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|298675190|ref|YP_003726940.1| - 0.1 12.0 0.1 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|298675190|ref|YP_003726940.1| - 0.18 11.2 0.3 1.6 8.0 0.2 2.2 1 1 0 1 1 1 0 AAA domain Closter_coat PF01785.12 gi|298675191|ref|YP_003726941.1| - 0.081 11.9 0.3 0.098 11.6 0.2 1.1 1 0 0 1 1 1 0 Closterovirus coat protein DUF904 PF06005.7 gi|298675191|ref|YP_003726941.1| - 0.18 12.0 2.3 0.17 12.2 1.6 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF904) HxlR PF01638.12 gi|298675192|ref|YP_003726942.1| - 4e-23 80.8 0.1 4.8e-23 80.5 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|298675192|ref|YP_003726942.1| - 0.00019 21.2 0.0 0.00033 20.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|298675192|ref|YP_003726942.1| - 0.00029 20.1 0.4 0.00042 19.6 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|298675192|ref|YP_003726942.1| - 0.00045 19.9 0.0 0.00058 19.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|298675192|ref|YP_003726942.1| - 0.00065 19.4 0.0 0.00091 18.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|298675192|ref|YP_003726942.1| - 0.00096 19.0 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|298675192|ref|YP_003726942.1| - 0.0069 16.0 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|298675192|ref|YP_003726942.1| - 0.024 14.6 0.0 0.048 13.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|298675192|ref|YP_003726942.1| - 0.048 13.5 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|298675192|ref|YP_003726942.1| - 0.064 12.8 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain DUF505 PF04458.7 gi|298675192|ref|YP_003726942.1| - 0.065 11.3 0.0 0.073 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4364 PF14277.1 gi|298675192|ref|YP_003726942.1| - 0.1 12.2 0.1 4 7.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) FXa_inhibition PF14670.1 gi|298675192|ref|YP_003726942.1| - 0.13 12.3 3.5 0.2 11.8 2.1 1.5 2 0 0 2 2 2 0 Coagulation Factor Xa inhibitory site TrmB PF01978.14 gi|298675193|ref|YP_003726943.1| - 3.2e-05 23.5 0.0 5.1e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|298675193|ref|YP_003726943.1| - 0.0015 18.1 0.1 0.0024 17.5 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|298675193|ref|YP_003726943.1| - 0.0021 17.7 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|298675193|ref|YP_003726943.1| - 0.0033 17.7 0.0 0.005 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|298675193|ref|YP_003726943.1| - 0.025 14.2 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.12 gi|298675193|ref|YP_003726943.1| - 0.038 13.5 0.6 0.05 13.1 0.4 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_24 PF13412.1 gi|298675193|ref|YP_003726943.1| - 0.046 13.1 0.0 0.078 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|298675193|ref|YP_003726943.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|298675193|ref|YP_003726943.1| - 0.11 12.4 0.1 0.3 11.0 0.1 1.8 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Fer4_5 PF12801.2 gi|298675194|ref|YP_003726944.1| - 5.9e-11 41.9 10.8 3.6e-09 36.2 1.6 4.0 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|298675194|ref|YP_003726944.1| - 2.3e-10 39.5 17.5 1.6e-05 24.2 1.5 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675194|ref|YP_003726944.1| - 7.9e-09 35.7 13.9 0.00069 19.9 3.2 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675194|ref|YP_003726944.1| - 3.1e-07 29.9 14.5 1.5e-05 24.6 1.9 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298675194|ref|YP_003726944.1| - 6.5e-07 29.5 17.5 1.5e-05 25.1 10.6 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675194|ref|YP_003726944.1| - 2e-06 27.7 13.9 0.0019 18.1 3.3 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675194|ref|YP_003726944.1| - 3.1e-06 26.9 19.2 5.4e-05 22.9 3.4 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675194|ref|YP_003726944.1| - 3.9e-06 26.5 49.2 2.7e-05 23.8 12.7 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675194|ref|YP_003726944.1| - 5.8e-05 23.7 16.5 0.0037 17.9 1.7 3.1 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|298675194|ref|YP_003726944.1| - 6.6e-05 23.1 17.0 0.014 15.6 4.6 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675194|ref|YP_003726944.1| - 0.00014 21.5 20.6 0.00049 19.8 1.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675194|ref|YP_003726944.1| - 0.00064 20.0 23.0 0.0031 17.8 2.2 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675194|ref|YP_003726944.1| - 0.0076 16.5 25.4 0.01 16.0 3.1 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|298675194|ref|YP_003726944.1| - 0.0084 16.4 2.8 0.0084 16.4 1.9 2.8 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298675194|ref|YP_003726944.1| - 0.044 14.3 26.5 0.093 13.3 2.7 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298675194|ref|YP_003726944.1| - 0.12 12.8 12.8 0.14 12.7 1.4 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4131 PF13567.1 gi|298675194|ref|YP_003726944.1| - 1.5 8.2 4.8 0.5 9.7 1.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) GCC2_GCC3 PF07699.8 gi|298675194|ref|YP_003726944.1| - 4.2 7.0 12.6 0.31 10.6 0.8 3.5 2 1 1 3 3 3 0 GCC2 and GCC3 Borealin PF10512.4 gi|298675195|ref|YP_003726945.1| - 0.023 14.5 2.0 0.67 9.8 0.3 2.0 1 1 1 2 2 2 0 Cell division cycle-associated protein 8 TraF PF13728.1 gi|298675195|ref|YP_003726945.1| - 0.047 13.1 0.0 0.052 13.0 0.0 1.0 1 0 0 1 1 1 0 F plasmid transfer operon protein K-box PF01486.12 gi|298675195|ref|YP_003726945.1| - 0.1 12.4 0.4 0.15 11.8 0.2 1.4 1 1 0 1 1 1 0 K-box region RHH_1 PF01402.16 gi|298675195|ref|YP_003726945.1| - 0.32 10.9 3.4 2.7 8.0 0.1 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family URO-D PF01208.12 gi|298675196|ref|YP_003726946.1| - 1.6e-58 198.2 0.0 1.8e-58 198.1 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) RtcB PF01139.12 gi|298675196|ref|YP_003726946.1| - 0.15 11.0 0.1 0.21 10.5 0.1 1.1 1 0 0 1 1 1 0 tRNA-splicing ligase RtcB NosD PF05048.8 gi|298675197|ref|YP_003726947.1| - 1.4e-64 217.5 137.9 3.5e-36 124.5 30.8 3.4 2 1 2 4 4 4 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|298675197|ref|YP_003726947.1| - 1.4e-28 99.6 109.5 1.2e-15 57.6 36.8 4.2 1 1 2 3 3 3 2 Right handed beta helix region DUF1565 PF07602.6 gi|298675197|ref|YP_003726947.1| - 1.1e-07 31.2 70.7 0.00087 18.5 13.6 5.0 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) RicinB_lectin_2 PF14200.1 gi|298675198|ref|YP_003726948.1| - 3.1e-19 69.2 13.1 3.2e-14 53.1 1.7 4.1 2 2 1 3 3 3 2 Ricin-type beta-trefoil lectin domain-like Fascin PF06268.8 gi|298675198|ref|YP_003726948.1| - 6e-12 45.6 1.4 6.2e-07 29.5 0.0 4.1 2 2 2 4 4 4 3 Fascin domain Ricin_B_lectin PF00652.17 gi|298675198|ref|YP_003726948.1| - 7.1e-12 45.4 9.8 7.1e-12 45.4 6.8 2.0 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain FRG1 PF06229.7 gi|298675198|ref|YP_003726948.1| - 2.2e-09 37.0 1.9 1e-05 25.0 0.1 2.9 2 1 1 3 3 3 2 FRG1-like family PAS_9 PF13426.1 gi|298675200|ref|YP_003726950.1| - 8.1e-46 154.6 0.3 2.9e-12 46.8 0.0 5.4 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|298675200|ref|YP_003726950.1| - 7.6e-44 148.2 0.0 1e-18 67.3 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|298675200|ref|YP_003726950.1| - 1.5e-34 118.1 0.0 6.2e-11 42.0 0.0 4.5 4 0 0 4 4 4 4 PAS fold HisKA_2 PF07568.7 gi|298675200|ref|YP_003726950.1| - 2.5e-29 100.9 3.2 4.5e-29 100.1 1.1 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|298675200|ref|YP_003726950.1| - 1.3e-18 66.1 0.0 3.2e-05 23.6 0.0 4.5 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|298675200|ref|YP_003726950.1| - 3.2e-09 36.4 0.1 4.8e-08 32.7 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|298675200|ref|YP_003726950.1| - 9.4e-09 35.5 0.1 0.03 14.5 0.0 4.9 4 1 0 4 4 4 2 PAS domain HWE_HK PF07536.9 gi|298675200|ref|YP_003726950.1| - 2.3e-05 24.7 0.0 2.3e-05 24.7 0.0 2.4 3 0 0 3 3 3 1 HWE histidine kinase PAS_3 PF08447.6 gi|298675200|ref|YP_003726950.1| - 0.0004 20.4 0.2 3.5 7.7 0.0 4.4 4 0 0 4 4 4 1 PAS fold PAS_7 PF12860.2 gi|298675200|ref|YP_003726950.1| - 0.00049 20.0 3.7 0.84 9.6 0.0 5.4 5 2 1 6 6 5 1 PAS fold HATPase_c_2 PF13581.1 gi|298675200|ref|YP_003726950.1| - 0.0008 19.1 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cache_3 PF14827.1 gi|298675200|ref|YP_003726950.1| - 0.0026 17.6 1.2 1.6 8.6 0.1 3.1 3 1 0 3 3 3 2 Sensory domain of two-component sensor kinase YgaB PF14182.1 gi|298675200|ref|YP_003726950.1| - 0.75 10.0 8.5 15 5.9 1.6 3.6 3 0 0 3 3 3 0 YgaB-like protein Mrr_cat PF04471.7 gi|298675201|ref|YP_003726951.1| - 3.1e-07 30.2 0.0 3.7e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Restriction endonuclease DUF2840 PF11000.3 gi|298675201|ref|YP_003726951.1| - 0.052 13.0 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2840) PTH2 PF01981.11 gi|298675202|ref|YP_003726952.1| - 8.1e-05 22.2 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Arg_repressor_C PF02863.13 gi|298675202|ref|YP_003726952.1| - 0.024 14.0 0.1 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 Arginine repressor, C-terminal domain PAS_3 PF08447.6 gi|298675203|ref|YP_003726953.1| - 2.2e-32 110.9 0.5 4.3e-18 65.2 0.2 2.3 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|298675203|ref|YP_003726953.1| - 1.2e-13 51.3 0.6 6.3e-08 32.9 0.1 2.3 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|298675203|ref|YP_003726953.1| - 6.9e-11 42.8 0.0 1.2e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|298675203|ref|YP_003726953.1| - 1.4e-05 24.9 0.0 0.008 16.1 0.0 2.3 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|298675203|ref|YP_003726953.1| - 9.8e-05 22.4 0.0 0.00018 21.6 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|298675203|ref|YP_003726953.1| - 0.00031 20.8 0.0 0.00057 20.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|298675203|ref|YP_003726953.1| - 0.00061 19.5 0.3 0.028 14.1 0.1 3.3 3 1 0 3 3 3 1 PAS fold SnoaL_3 PF13474.1 gi|298675203|ref|YP_003726953.1| - 0.019 14.9 0.0 12 5.9 0.0 2.8 2 1 0 2 2 2 0 SnoaL-like domain PAS_4 PF08448.5 gi|298675203|ref|YP_003726953.1| - 0.041 13.9 0.0 0.4 10.7 0.0 2.4 3 0 0 3 3 3 0 PAS fold DUF2608 PF11019.3 gi|298675204|ref|YP_003726954.1| - 0.0098 14.9 0.8 5 6.0 0.1 3.0 2 1 1 3 3 3 3 Protein of unknown function (DUF2608) Resolvase PF00239.16 gi|298675205|ref|YP_003726955.1| - 8.5e-17 61.3 0.1 1e-16 61.0 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Trp_syntA PF00290.15 gi|298675205|ref|YP_003726955.1| - 0.025 13.0 0.0 0.034 12.6 0.0 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain HTH_17 PF12728.2 gi|298675205|ref|YP_003726955.1| - 0.054 13.7 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Chordopox_A13L PF05961.6 gi|298675205|ref|YP_003726955.1| - 0.6 10.0 3.9 0.59 10.1 0.3 2.3 2 0 0 2 2 2 0 Chordopoxvirus A13L protein OrfB_IS605 PF01385.14 gi|298675206|ref|YP_003726956.1| - 5.6e-58 196.0 8.1 1e-57 195.1 5.6 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675206|ref|YP_003726956.1| - 4e-12 45.6 0.0 1.1e-11 44.2 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glyco_hydro_97 PF10566.4 gi|298675206|ref|YP_003726956.1| - 0.0045 16.1 0.6 0.0088 15.1 0.4 1.5 1 0 0 1 1 1 1 Glycoside hydrolase 97 Muted PF14942.1 gi|298675206|ref|YP_003726956.1| - 0.017 15.0 0.4 0.039 13.8 0.0 1.7 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF479 PF04336.7 gi|298675206|ref|YP_003726956.1| - 0.2 11.7 1.9 0.62 10.1 0.2 2.5 2 2 1 3 3 3 0 Protein of unknown function, DUF479 DUF22 PF01629.11 gi|298675207|ref|YP_003726957.1| - 1.5e-28 98.4 0.4 1.9e-28 98.2 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF22 DUF1682 PF07946.9 gi|298675208|ref|YP_003726958.1| - 0.015 14.1 0.3 0.02 13.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) zf-C4_Topoisom PF01396.14 gi|298675208|ref|YP_003726958.1| - 0.069 12.6 0.7 0.18 11.3 0.5 1.8 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Peptidase_M6 PF05547.6 gi|298675208|ref|YP_003726958.1| - 0.075 11.0 1.8 0.086 10.8 1.2 1.1 1 0 0 1 1 1 0 Immune inhibitor A peptidase M6 zf-ribbon_3 PF13248.1 gi|298675208|ref|YP_003726958.1| - 0.2 10.8 4.3 1.1 8.5 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DUF4428 PF14471.1 gi|298675208|ref|YP_003726958.1| - 0.56 10.0 0.0 0.56 10.0 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) Lar_restr_allev PF14354.1 gi|298675208|ref|YP_003726958.1| - 2 8.7 6.5 0.72 10.1 0.6 2.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.2 gi|298675208|ref|YP_003726958.1| - 2.1 8.2 5.9 1.3 8.9 0.6 2.7 2 1 0 2 2 2 0 Double zinc ribbon Hormone_2 PF00123.15 gi|298675208|ref|YP_003726958.1| - 2.2 8.2 4.0 2.2 8.1 0.5 2.6 2 0 0 2 2 2 0 Peptide hormone A2L_zn_ribbon PF08792.5 gi|298675208|ref|YP_003726958.1| - 4.5 6.8 9.8 0.87 9.1 0.1 3.3 3 0 0 3 3 3 0 A2L zinc ribbon domain CMD PF02627.15 gi|298675209|ref|YP_003726959.1| - 6.6e-15 54.7 0.0 7.7e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family OS-D PF03392.8 gi|298675209|ref|YP_003726959.1| - 0.043 13.7 0.1 0.051 13.5 0.1 1.2 1 0 0 1 1 1 0 Insect pheromone-binding family, A10/OS-D DUF768 PF05589.6 gi|298675209|ref|YP_003726959.1| - 0.17 11.8 0.6 0.31 11.0 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF768) SinI PF08671.5 gi|298675209|ref|YP_003726959.1| - 0.31 10.4 1.4 0.44 10.0 0.2 1.8 2 0 0 2 2 2 0 Anti-repressor SinI HTH_20 PF12840.2 gi|298675210|ref|YP_003726960.1| - 3.3e-06 26.7 0.0 4.9e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|298675210|ref|YP_003726960.1| - 2.8e-05 23.6 0.0 4.1e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|298675210|ref|YP_003726960.1| - 0.0003 20.7 0.0 0.00049 20.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|298675210|ref|YP_003726960.1| - 0.00065 19.4 0.7 0.0011 18.7 0.5 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|298675210|ref|YP_003726960.1| - 0.033 13.8 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3116 PF11313.3 gi|298675210|ref|YP_003726960.1| - 0.11 12.0 0.7 0.22 11.1 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) HAD_2 PF13419.1 gi|298675211|ref|YP_003726961.1| - 0.0095 16.1 0.3 0.22 11.7 0.0 2.4 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|298675211|ref|YP_003726961.1| - 0.025 13.5 0.7 2.8 6.8 0.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2608) ApoM PF11032.3 gi|298675211|ref|YP_003726961.1| - 0.029 13.9 0.0 0.079 12.5 0.0 1.7 2 0 0 2 2 2 0 Apolipoprotein M (ApoM) Acid_PPase PF12689.2 gi|298675211|ref|YP_003726961.1| - 0.029 14.0 2.7 0.26 10.9 1.9 2.0 1 1 0 1 1 1 0 Acid Phosphatase FeoC PF09012.5 gi|298675212|ref|YP_003726962.1| - 1.3e-08 34.3 0.4 1.7e-08 34.0 0.3 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_24 PF13412.1 gi|298675212|ref|YP_003726962.1| - 1.8e-06 27.2 0.2 3.4e-06 26.3 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|298675212|ref|YP_003726962.1| - 2.8e-05 23.8 0.0 3.7e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|298675212|ref|YP_003726962.1| - 0.0004 19.6 0.0 0.00068 18.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|298675212|ref|YP_003726962.1| - 0.00052 19.6 0.0 0.00078 19.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|298675212|ref|YP_003726962.1| - 0.00095 19.1 0.1 0.043 13.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|298675212|ref|YP_003726962.1| - 0.0018 17.7 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_45 PF14947.1 gi|298675212|ref|YP_003726962.1| - 0.0019 17.9 2.2 0.031 14.0 1.5 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_Mga PF08280.6 gi|298675212|ref|YP_003726962.1| - 0.003 17.2 0.2 0.004 16.8 0.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|298675212|ref|YP_003726962.1| - 0.0057 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|298675212|ref|YP_003726962.1| - 0.011 15.4 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.7 gi|298675212|ref|YP_003726962.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_5 PF01022.15 gi|298675212|ref|YP_003726962.1| - 0.013 15.1 0.4 0.029 14.0 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|298675212|ref|YP_003726962.1| - 0.016 14.7 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|298675212|ref|YP_003726962.1| - 0.031 14.3 0.3 0.045 13.8 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|298675212|ref|YP_003726962.1| - 0.038 13.6 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|298675212|ref|YP_003726962.1| - 0.045 13.4 0.0 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|298675212|ref|YP_003726962.1| - 0.095 12.3 0.1 11 5.7 0.1 2.0 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Sulfolobus_pRN PF05584.6 gi|298675212|ref|YP_003726962.1| - 0.098 12.6 0.1 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_9 PF08221.6 gi|298675212|ref|YP_003726962.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_3 PF01381.17 gi|298675212|ref|YP_003726962.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|298675212|ref|YP_003726962.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|298675212|ref|YP_003726962.1| - 0.14 11.7 0.0 0.29 10.7 0.0 1.5 2 0 0 2 2 1 0 HTH DNA binding domain HTH_7 PF02796.10 gi|298675212|ref|YP_003726962.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF2250 PF10007.4 gi|298675212|ref|YP_003726962.1| - 0.14 12.0 0.1 0.57 10.1 0.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DDRGK PF09756.4 gi|298675212|ref|YP_003726962.1| - 0.15 11.4 0.7 0.18 11.1 0.5 1.1 1 0 0 1 1 1 0 DDRGK domain FeoB_N PF02421.13 gi|298675214|ref|YP_003726964.1| - 1.5e-68 228.9 2.6 2.3e-68 228.3 1.8 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|298675214|ref|YP_003726964.1| - 2.5e-46 156.0 15.1 3.7e-29 100.8 1.8 2.7 2 0 0 2 2 2 2 Nucleoside recognition FeoB_C PF07664.7 gi|298675214|ref|YP_003726964.1| - 4.4e-23 80.4 1.2 4.4e-23 80.4 0.8 3.7 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus MMR_HSR1 PF01926.18 gi|298675214|ref|YP_003726964.1| - 4.4e-16 58.8 0.5 1e-15 57.7 0.3 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|298675214|ref|YP_003726964.1| - 5e-05 22.5 0.1 8.7e-05 21.8 0.1 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|298675214|ref|YP_003726964.1| - 0.003 18.0 0.0 0.0087 16.5 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|298675214|ref|YP_003726964.1| - 0.012 15.1 1.9 0.059 12.8 1.3 2.1 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|298675214|ref|YP_003726964.1| - 0.038 13.3 0.2 0.3 10.4 0.2 2.4 1 1 0 1 1 1 0 Ras family DUF164 PF02591.10 gi|298675214|ref|YP_003726964.1| - 0.15 11.9 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Putative zinc ribbon domain FeoA PF04023.9 gi|298675215|ref|YP_003726965.1| - 8.7e-19 67.2 0.0 9.5e-19 67.1 0.0 1.0 1 0 0 1 1 1 1 FeoA domain DsbC_N PF10411.4 gi|298675215|ref|YP_003726965.1| - 0.084 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Disulfide bond isomerase protein N-terminus Fe_dep_repress PF01325.14 gi|298675216|ref|YP_003726966.1| - 1.5e-17 63.2 0.4 2.3e-17 62.6 0.3 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|298675216|ref|YP_003726966.1| - 1e-15 57.1 0.0 2.5e-15 55.9 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain LexA_DNA_bind PF01726.11 gi|298675216|ref|YP_003726966.1| - 0.00023 20.6 0.0 0.00045 19.7 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain FeoC PF09012.5 gi|298675216|ref|YP_003726966.1| - 0.00047 19.8 0.0 0.00077 19.1 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_Crp_2 PF13545.1 gi|298675216|ref|YP_003726966.1| - 0.002 17.9 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|298675216|ref|YP_003726966.1| - 0.0027 17.3 0.1 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|298675216|ref|YP_003726966.1| - 0.0062 15.8 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|298675216|ref|YP_003726966.1| - 0.0069 16.4 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|298675216|ref|YP_003726966.1| - 0.019 14.6 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|298675216|ref|YP_003726966.1| - 0.025 14.3 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF759 PF05537.6 gi|298675216|ref|YP_003726966.1| - 0.03 13.1 0.0 0.035 12.8 0.0 1.0 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF759) HTH_DeoR PF08220.7 gi|298675216|ref|YP_003726966.1| - 0.032 13.7 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|298675216|ref|YP_003726966.1| - 0.044 13.3 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|298675216|ref|YP_003726966.1| - 0.051 13.2 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Mrr_N PF14338.1 gi|298675216|ref|YP_003726966.1| - 0.088 12.8 0.1 0.3 11.2 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain Topoisom_bac PF01131.15 gi|298675216|ref|YP_003726966.1| - 0.13 11.0 0.1 0.17 10.7 0.1 1.2 1 0 0 1 1 1 0 DNA topoisomerase HTH_27 PF13463.1 gi|298675216|ref|YP_003726966.1| - 0.13 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Lipoprotein_20 PF13942.1 gi|298675217|ref|YP_003726967.1| - 0.027 14.0 0.6 0.035 13.6 0.4 1.1 1 0 0 1 1 1 0 YfhG lipoprotein Snapin_Pallidin PF14712.1 gi|298675217|ref|YP_003726967.1| - 0.033 14.5 1.5 0.041 14.1 1.1 1.1 1 0 0 1 1 1 0 Snapin/Pallidin Aconitase_C PF00694.14 gi|298675218|ref|YP_003726968.1| - 4.8e-21 75.2 0.0 8.7e-21 74.4 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|298675218|ref|YP_003726968.1| - 0.00017 21.1 0.2 0.0077 15.6 0.1 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|298675220|ref|YP_003726970.1| - 9.7e-100 333.8 0.1 1.2e-99 333.5 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase T2SF PF00482.18 gi|298675221|ref|YP_003726971.1| - 2.6e-14 53.1 0.0 5.1e-11 42.5 0.0 4.3 4 1 1 5 5 5 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|298675222|ref|YP_003726972.1| - 2.6e-41 141.3 0.0 3.4e-41 140.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|298675222|ref|YP_003726972.1| - 0.001 18.5 0.0 0.002 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|298675222|ref|YP_003726972.1| - 0.024 14.9 0.5 0.08 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|298675222|ref|YP_003726972.1| - 0.14 12.1 0.0 0.4 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|298675223|ref|YP_003726973.1| - 2.5e-20 72.5 1.6 3e-20 72.3 1.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|298675223|ref|YP_003726973.1| - 5.6e-09 35.6 0.0 8.1e-09 35.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675223|ref|YP_003726973.1| - 2.9e-05 24.2 0.0 5.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|298675223|ref|YP_003726973.1| - 5.6e-05 22.8 0.0 8.1e-05 22.3 0.0 1.3 1 1 0 1 1 1 1 NACHT domain AAA_18 PF13238.1 gi|298675223|ref|YP_003726973.1| - 6.6e-05 23.2 0.1 9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|298675223|ref|YP_003726973.1| - 0.00036 20.0 0.0 0.00068 19.1 0.0 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain DUF2075 PF09848.4 gi|298675223|ref|YP_003726973.1| - 0.0017 17.3 0.5 0.0026 16.7 0.3 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|298675223|ref|YP_003726973.1| - 0.0018 19.1 0.0 0.0027 18.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|298675223|ref|YP_003726973.1| - 0.0018 18.4 0.3 0.0036 17.5 0.2 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|298675223|ref|YP_003726973.1| - 0.0028 17.3 0.0 0.0055 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|298675223|ref|YP_003726973.1| - 0.0041 16.3 1.0 0.0057 15.8 0.0 1.7 2 1 0 2 2 2 1 Chromatin associated protein KTI12 CbiA PF01656.18 gi|298675223|ref|YP_003726973.1| - 0.0049 16.2 0.1 0.0065 15.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|298675223|ref|YP_003726973.1| - 0.0068 15.8 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein CobU PF02283.11 gi|298675223|ref|YP_003726973.1| - 0.0075 15.6 0.4 0.26 10.6 0.1 2.1 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.1 gi|298675223|ref|YP_003726973.1| - 0.011 15.6 1.0 0.098 12.5 0.7 2.1 1 1 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|298675223|ref|YP_003726973.1| - 0.022 13.8 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ AAA_19 PF13245.1 gi|298675223|ref|YP_003726973.1| - 0.025 14.3 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|298675223|ref|YP_003726973.1| - 0.025 13.4 0.2 2.7 6.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.1 gi|298675223|ref|YP_003726973.1| - 0.026 14.3 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|298675223|ref|YP_003726973.1| - 0.027 13.3 0.4 0.1 11.4 0.0 2.0 2 1 0 2 2 2 0 DnaB-like helicase C terminal domain Torsin PF06309.6 gi|298675223|ref|YP_003726973.1| - 0.032 14.0 0.1 0.11 12.3 0.0 1.8 3 0 0 3 3 2 0 Torsin UPF0079 PF02367.12 gi|298675223|ref|YP_003726973.1| - 0.032 13.8 0.0 0.079 12.5 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|298675223|ref|YP_003726973.1| - 0.046 13.1 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|298675223|ref|YP_003726973.1| - 0.059 12.9 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|298675223|ref|YP_003726973.1| - 0.082 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|298675223|ref|YP_003726973.1| - 0.085 12.2 0.1 0.22 10.8 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase Arch_flagellin PF01917.11 gi|298675224|ref|YP_003726974.1| - 3.7e-15 56.0 7.5 3.1e-14 53.0 5.2 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|298675224|ref|YP_003726974.1| - 0.041 13.9 0.7 0.11 12.6 0.5 1.7 1 1 0 1 1 1 0 CARDB AlaDh_PNT_C PF01262.16 gi|298675224|ref|YP_003726974.1| - 0.13 11.8 0.6 0.25 10.8 0.4 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Arch_flagellin PF01917.11 gi|298675225|ref|YP_003726975.1| - 2.1e-06 27.4 6.9 1.4e-05 24.7 4.8 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|298675225|ref|YP_003726975.1| - 0.0034 17.4 5.7 0.0052 16.8 3.3 1.7 2 1 0 2 2 2 1 CARDB I-set PF07679.11 gi|298675225|ref|YP_003726975.1| - 0.028 14.2 0.7 1 9.2 0.1 2.1 2 0 0 2 2 2 0 Immunoglobulin I-set domain NPCBM_assoc PF10633.4 gi|298675225|ref|YP_003726975.1| - 0.047 13.7 1.1 6 7.0 0.0 2.5 2 1 1 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Herpes_UL82_83 PF05784.6 gi|298675225|ref|YP_003726975.1| - 0.05 12.3 0.2 0.072 11.8 0.1 1.3 1 0 0 1 1 1 0 Betaherpesvirus UL82/83 protein N terminus PKD PF00801.15 gi|298675225|ref|YP_003726975.1| - 0.29 10.8 4.5 1.1 9.0 1.1 2.2 2 0 0 2 2 2 0 PKD domain Arch_fla_DE PF04659.8 gi|298675226|ref|YP_003726976.1| - 1.1e-27 95.8 1.0 2.3e-27 94.7 0.1 2.0 2 0 0 2 2 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|298675226|ref|YP_003726976.1| - 2.5e-19 68.9 4.1 2.5e-19 68.9 2.9 3.5 3 1 0 3 3 2 1 Flagella accessory protein C (FlaC) CDC37_N PF03234.9 gi|298675226|ref|YP_003726976.1| - 0.0011 19.3 8.9 0.0022 18.3 6.1 1.6 1 0 0 1 1 1 1 Cdc37 N terminal kinase binding Snapin_Pallidin PF14712.1 gi|298675226|ref|YP_003726976.1| - 0.0027 17.9 10.4 0.17 12.1 0.8 3.3 2 1 1 3 3 3 2 Snapin/Pallidin Syntaxin-6_N PF09177.6 gi|298675226|ref|YP_003726976.1| - 0.0034 17.7 12.6 0.074 13.4 0.9 2.7 1 1 0 2 2 2 1 Syntaxin 6, N-terminal Nup54 PF13874.1 gi|298675226|ref|YP_003726976.1| - 0.0048 16.5 7.9 0.17 11.5 0.2 2.4 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 Tektin PF03148.9 gi|298675226|ref|YP_003726976.1| - 0.0048 15.5 8.2 0.011 14.3 0.4 2.1 2 0 0 2 2 2 1 Tektin family DUF16 PF01519.11 gi|298675226|ref|YP_003726976.1| - 0.0049 17.0 9.8 0.032 14.4 0.8 2.5 2 0 0 2 2 2 1 Protein of unknown function DUF16 DivIC PF04977.10 gi|298675226|ref|YP_003726976.1| - 0.0065 15.9 11.5 0.14 11.6 1.8 3.0 2 1 0 2 2 2 2 Septum formation initiator Taxilin PF09728.4 gi|298675226|ref|YP_003726976.1| - 0.0075 15.3 7.0 0.5 9.4 0.8 2.4 2 0 0 2 2 2 2 Myosin-like coiled-coil protein Nsp1_C PF05064.8 gi|298675226|ref|YP_003726976.1| - 0.01 15.4 17.8 0.011 15.3 3.9 3.0 3 1 0 3 3 3 0 Nsp1-like C-terminal region Tropomyosin PF00261.15 gi|298675226|ref|YP_003726976.1| - 0.01 14.9 8.0 0.47 9.4 0.1 2.7 2 1 0 2 2 2 0 Tropomyosin MCPsignal PF00015.16 gi|298675226|ref|YP_003726976.1| - 0.011 15.3 7.9 1.6 8.2 3.4 2.3 1 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain AAA_13 PF13166.1 gi|298675226|ref|YP_003726976.1| - 0.012 14.0 21.6 0.14 10.6 14.9 1.9 1 1 0 1 1 1 0 AAA domain Med30 PF11315.3 gi|298675226|ref|YP_003726976.1| - 0.014 15.5 2.1 0.34 11.0 0.2 2.4 2 0 0 2 2 2 0 Mediator complex subunit 30 DUF972 PF06156.8 gi|298675226|ref|YP_003726976.1| - 0.015 15.6 14.1 0.094 13.0 2.0 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF972) NPV_P10 PF05531.7 gi|298675226|ref|YP_003726976.1| - 0.029 14.6 12.0 0.28 11.4 1.1 2.8 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Tropomyosin_1 PF12718.2 gi|298675226|ref|YP_003726976.1| - 0.03 14.1 17.7 0.053 13.3 2.6 2.9 2 1 0 2 2 2 0 Tropomyosin like LOH1CR12 PF10158.4 gi|298675226|ref|YP_003726976.1| - 0.036 13.8 6.6 1.3 8.7 0.1 2.3 1 1 0 2 2 2 0 Tumour suppressor protein DUF724 PF05266.9 gi|298675226|ref|YP_003726976.1| - 0.038 13.6 7.6 0.14 11.7 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF724) AAA_27 PF13514.1 gi|298675226|ref|YP_003726976.1| - 0.045 11.4 3.6 0.066 10.8 2.5 1.2 1 0 0 1 1 1 0 AAA domain BLOC1_2 PF10046.4 gi|298675226|ref|YP_003726976.1| - 0.054 13.6 21.1 0.33 11.1 2.2 3.4 3 1 1 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.3 gi|298675226|ref|YP_003726976.1| - 0.056 12.6 5.9 2.1 7.5 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) PTRF_SDPR PF15237.1 gi|298675226|ref|YP_003726976.1| - 0.059 12.7 5.2 0.47 9.8 3.4 2.1 1 1 1 2 2 2 0 PTRF/SDPR family Ded_cyto PF06920.8 gi|298675226|ref|YP_003726976.1| - 0.082 12.2 3.3 0.15 11.3 2.3 1.4 1 0 0 1 1 1 0 Dedicator of cytokinesis Allexi_40kDa PF05549.6 gi|298675226|ref|YP_003726976.1| - 0.087 12.0 5.9 0.17 11.1 0.6 2.1 2 0 0 2 2 2 0 Allexivirus 40kDa protein TMF_TATA_bd PF12325.3 gi|298675226|ref|YP_003726976.1| - 0.11 12.2 15.5 0.19 11.4 4.5 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding EzrA PF06160.7 gi|298675226|ref|YP_003726976.1| - 0.12 10.5 16.0 0.28 9.3 3.1 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF4140 PF13600.1 gi|298675226|ref|YP_003726976.1| - 0.12 12.8 4.0 3.9 7.9 0.2 2.6 3 0 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) DASH_Dad2 PF08654.5 gi|298675226|ref|YP_003726976.1| - 0.12 12.4 0.3 0.12 12.4 0.2 2.9 3 0 0 3 3 2 0 DASH complex subunit Dad2 DUF4515 PF14988.1 gi|298675226|ref|YP_003726976.1| - 0.13 11.9 6.2 0.3 10.7 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Myosin_tail_1 PF01576.14 gi|298675226|ref|YP_003726976.1| - 0.13 9.9 13.4 0.16 9.6 1.1 2.1 2 0 0 2 2 2 0 Myosin tail Mnd1 PF03962.10 gi|298675226|ref|YP_003726976.1| - 0.14 11.8 11.3 0.053 13.1 0.6 2.3 1 1 0 2 2 2 0 Mnd1 family Reo_sigmaC PF04582.7 gi|298675226|ref|YP_003726976.1| - 0.14 11.3 7.5 0.82 8.7 0.4 2.2 1 1 1 2 2 2 0 Reovirus sigma C capsid protein DUF812 PF05667.6 gi|298675226|ref|YP_003726976.1| - 0.17 10.3 12.6 0.2 10.1 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) TMF_DNA_bd PF12329.3 gi|298675226|ref|YP_003726976.1| - 0.18 11.6 12.9 0.5 10.2 0.5 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding IFT57 PF10498.4 gi|298675226|ref|YP_003726976.1| - 0.19 10.4 16.7 0.24 10.1 2.9 2.3 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 V_ATPase_I PF01496.14 gi|298675226|ref|YP_003726976.1| - 0.19 9.5 15.0 0.044 11.6 3.3 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family 4HB_MCP_1 PF12729.2 gi|298675226|ref|YP_003726976.1| - 0.22 10.8 12.1 0.42 9.9 1.3 2.6 2 1 0 2 2 2 0 Four helix bundle sensory module for signal transduction DUF1515 PF07439.6 gi|298675226|ref|YP_003726976.1| - 0.24 11.2 2.1 14 5.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) Atg14 PF10186.4 gi|298675226|ref|YP_003726976.1| - 0.24 10.2 10.2 0.29 10.0 0.5 2.1 1 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 AKNA PF12443.3 gi|298675226|ref|YP_003726976.1| - 0.26 11.3 3.2 1.7 8.7 0.2 3.0 1 1 2 3 3 3 0 AT-hook-containing transcription factor Laminin_I PF06008.9 gi|298675226|ref|YP_003726976.1| - 0.31 10.3 10.0 0.94 8.7 1.5 2.4 2 0 0 2 2 2 0 Laminin Domain I WXG100 PF06013.7 gi|298675226|ref|YP_003726976.1| - 0.35 10.8 2.5 8.4 6.4 0.0 3.0 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Retrotrans_gag PF03732.12 gi|298675226|ref|YP_003726976.1| - 0.45 10.6 2.3 2.1 8.5 0.2 2.7 1 1 1 2 2 2 0 Retrotransposon gag protein EMP24_GP25L PF01105.19 gi|298675226|ref|YP_003726976.1| - 0.45 10.2 7.0 1.3 8.6 0.5 2.5 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD bZIP_1 PF00170.16 gi|298675226|ref|YP_003726976.1| - 0.49 10.3 10.0 1.5 8.8 0.7 3.1 2 1 1 3 3 2 0 bZIP transcription factor PspA_IM30 PF04012.7 gi|298675226|ref|YP_003726976.1| - 0.5 9.6 5.5 0.93 8.8 1.1 2.2 2 0 0 2 2 2 0 PspA/IM30 family DUF948 PF06103.6 gi|298675226|ref|YP_003726976.1| - 0.63 9.9 9.9 0.45 10.4 0.6 3.1 1 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.4 gi|298675226|ref|YP_003726976.1| - 0.71 9.7 17.0 2.8 7.7 3.5 2.5 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.7 gi|298675226|ref|YP_003726976.1| - 0.71 9.6 12.5 2.2 8.0 0.8 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF1664) DUF4201 PF13870.1 gi|298675226|ref|YP_003726976.1| - 0.75 9.2 9.5 2.4 7.5 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Prefoldin PF02996.12 gi|298675226|ref|YP_003726976.1| - 0.76 9.4 10.3 4.1 7.0 0.9 3.3 2 1 1 3 3 3 0 Prefoldin subunit Blo-t-5 PF11642.3 gi|298675226|ref|YP_003726976.1| - 0.94 9.2 7.4 1.2 8.9 0.9 2.3 2 0 0 2 2 2 0 Mite allergen Blo t 5 CCDC155 PF14662.1 gi|298675226|ref|YP_003726976.1| - 0.96 9.0 10.7 24 4.4 7.1 2.2 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 Adeno_PIX PF03955.9 gi|298675226|ref|YP_003726976.1| - 1.3 9.5 3.9 7 7.2 0.3 2.6 2 1 1 3 3 2 0 Adenovirus hexon-associated protein (IX) Syntaxin_2 PF14523.1 gi|298675226|ref|YP_003726976.1| - 1.4 9.0 13.9 0.19 11.8 2.1 2.5 2 0 0 2 2 2 0 Syntaxin-like protein DUF4200 PF13863.1 gi|298675226|ref|YP_003726976.1| - 1.5 8.7 12.4 1.1 9.1 1.2 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) Ax_dynein_light PF10211.4 gi|298675226|ref|YP_003726976.1| - 1.5 8.5 12.6 2.4 7.9 0.6 3.1 1 1 2 3 3 3 0 Axonemal dynein light chain IncA PF04156.9 gi|298675226|ref|YP_003726976.1| - 1.5 8.3 12.6 1.5e+02 1.8 8.6 2.2 1 1 0 1 1 1 0 IncA protein Cortex-I_coil PF09304.5 gi|298675226|ref|YP_003726976.1| - 1.6 8.7 8.6 2.2 8.3 0.7 2.6 2 1 0 2 2 2 0 Cortexillin I, coiled coil UPF0184 PF03670.8 gi|298675226|ref|YP_003726976.1| - 1.7 8.8 8.4 0.49 10.6 1.1 2.8 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) Spc7 PF08317.6 gi|298675226|ref|YP_003726976.1| - 1.8 7.1 17.6 1.6 7.3 2.6 2.2 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF904 PF06005.7 gi|298675226|ref|YP_003726976.1| - 1.9 8.8 21.3 0.054 13.8 1.4 4.0 3 2 1 4 4 3 0 Protein of unknown function (DUF904) PspB PF06667.7 gi|298675226|ref|YP_003726976.1| - 2.6 8.0 5.0 1.9 8.4 0.2 2.9 2 2 1 3 3 2 0 Phage shock protein B DUF1090 PF06476.7 gi|298675226|ref|YP_003726976.1| - 2.6 7.7 7.4 5.5 6.6 1.8 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1090) Prefoldin_2 PF01920.15 gi|298675226|ref|YP_003726976.1| - 2.6 7.8 13.4 1.7 8.4 1.9 3.0 2 1 0 2 2 2 0 Prefoldin subunit Matrilin_ccoil PF10393.4 gi|298675226|ref|YP_003726976.1| - 2.9 7.3 6.0 9.5 5.6 0.2 3.2 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Jnk-SapK_ap_N PF09744.4 gi|298675226|ref|YP_003726976.1| - 3 7.8 13.3 2.1 8.3 1.3 2.3 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Laminin_II PF06009.7 gi|298675226|ref|YP_003726976.1| - 3 7.6 17.4 0.96 9.1 0.8 2.6 2 1 0 3 3 2 0 Laminin Domain II ATG16 PF08614.6 gi|298675226|ref|YP_003726976.1| - 3.5 7.4 12.1 4.5 7.0 1.2 2.3 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF3552 PF12072.3 gi|298675226|ref|YP_003726976.1| - 4.9 6.3 12.4 3 7.0 1.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Prominin PF05478.6 gi|298675226|ref|YP_003726976.1| - 6.9 4.0 9.6 52 1.1 6.3 1.8 1 1 0 1 1 1 0 Prominin DUF4446 PF14584.1 gi|298675226|ref|YP_003726976.1| - 7.6 6.3 8.3 21 4.9 1.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) FTA4 PF13093.1 gi|298675226|ref|YP_003726976.1| - 7.6 5.8 12.8 45 3.3 9.2 1.9 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Response_reg PF00072.19 gi|298675227|ref|YP_003726977.1| - 2.6e-27 95.0 1.1 6.1e-27 93.8 0.8 1.7 1 0 0 1 1 1 1 Response regulator receiver domain KaiC PF06745.8 gi|298675227|ref|YP_003726977.1| - 0.00018 20.7 0.2 0.00053 19.1 0.0 1.8 2 1 0 2 2 2 1 KaiC tRNA-synt_2c PF01411.14 gi|298675228|ref|YP_003726978.1| - 3.6e-135 451.3 0.0 4.7e-135 451.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|298675228|ref|YP_003726978.1| - 4.3e-13 48.7 2.9 5.9e-13 48.3 1.0 2.0 2 0 0 2 2 2 1 DHHA1 domain tRNA_SAD PF07973.9 gi|298675228|ref|YP_003726978.1| - 3.9e-12 45.8 0.2 1.1e-11 44.4 0.1 1.8 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain P5CR_dimer PF14748.1 gi|298675228|ref|YP_003726978.1| - 0.13 12.2 0.0 0.37 10.8 0.0 1.7 1 0 0 1 1 1 0 Pyrroline-5-carboxylate reductase dimerisation OrfB_IS605 PF01385.14 gi|298675230|ref|YP_003726980.1| - 8.4e-42 143.1 8.0 8.4e-42 143.1 5.5 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675230|ref|YP_003726980.1| - 3.2e-24 84.3 0.3 6.5e-24 83.3 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675230|ref|YP_003726980.1| - 3e-21 74.4 2.0 7.4e-21 73.2 1.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain M_domain PF12938.2 gi|298675230|ref|YP_003726980.1| - 0.014 15.2 5.0 0.097 12.4 1.3 2.2 2 0 0 2 2 2 0 M domain of GW182 Phage_GP20 PF06810.6 gi|298675230|ref|YP_003726980.1| - 0.1 12.0 10.3 0.093 12.1 2.3 2.4 2 0 0 2 2 2 0 Phage minor structural protein GP20 HypA PF01155.14 gi|298675230|ref|YP_003726980.1| - 0.12 12.0 0.7 0.29 10.8 0.1 2.0 3 0 0 3 3 3 0 Hydrogenase expression/synthesis hypA family Occludin_ELL PF07303.8 gi|298675230|ref|YP_003726980.1| - 0.85 10.3 9.5 0.3 11.8 2.6 2.4 2 0 0 2 2 2 0 Occludin homology domain DUF904 PF06005.7 gi|298675230|ref|YP_003726980.1| - 2.7 8.3 8.6 2.3 8.5 2.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF904) DivIC PF04977.10 gi|298675230|ref|YP_003726980.1| - 3.2 7.3 7.2 12 5.4 0.1 3.0 2 1 0 2 2 2 0 Septum formation initiator Rubredoxin PF00301.15 gi|298675230|ref|YP_003726980.1| - 3.8 7.4 8.5 48 3.9 5.9 2.5 1 1 0 1 1 1 0 Rubredoxin GDE_C PF06202.9 gi|298675231|ref|YP_003726981.1| - 1.6e-136 454.9 0.0 2.3e-136 454.3 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|298675231|ref|YP_003726981.1| - 2.5e-74 249.2 0.5 3.7e-74 248.7 0.4 1.3 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Glyco_hydro_100 PF12899.2 gi|298675231|ref|YP_003726981.1| - 7.7e-07 27.8 0.0 0.00052 18.5 0.0 2.3 2 0 0 2 2 2 2 Alkaline and neutral invertase DUF608 PF04685.8 gi|298675231|ref|YP_003726981.1| - 9.5e-06 24.5 0.6 1.8e-05 23.6 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|298675231|ref|YP_003726981.1| - 0.001 17.4 0.0 0.0014 16.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Med25_VWA PF11265.3 gi|298675231|ref|YP_003726981.1| - 0.07 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Mediator complex subunit 25 von Willebrand factor type A Glyco_hydro_15 PF00723.16 gi|298675232|ref|YP_003726982.1| - 1e-14 53.9 0.2 2.6e-08 32.8 0.5 3.6 3 1 1 4 4 4 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|298675232|ref|YP_003726982.1| - 0.00054 18.7 1.1 0.00081 18.2 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF608 DUF3938 PF13074.1 gi|298675232|ref|YP_003726982.1| - 0.0016 18.2 0.0 0.0044 16.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3938) V4R PF02830.13 gi|298675233|ref|YP_003726983.1| - 9.8e-14 50.9 0.5 1.6e-13 50.2 0.4 1.3 1 0 0 1 1 1 1 V4R domain ACT_4 PF13291.1 gi|298675233|ref|YP_003726983.1| - 0.047 14.0 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 ACT domain Glyco_hydro_57 PF03065.10 gi|298675234|ref|YP_003726984.1| - 6.1e-71 239.2 0.0 3.7e-70 236.6 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|298675234|ref|YP_003726984.1| - 8.2e-07 28.6 0.0 1.4e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF1241 PF06840.6 gi|298675234|ref|YP_003726984.1| - 0.067 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) Glyco_hydro_57 PF03065.10 gi|298675235|ref|YP_003726985.1| - 9.1e-49 166.2 2.0 5.3e-48 163.7 1.4 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 CheD PF03975.8 gi|298675236|ref|YP_003726986.1| - 3.4e-32 110.5 0.1 4.1e-32 110.3 0.1 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Cu-oxidase_4 PF02578.10 gi|298675236|ref|YP_003726986.1| - 0.021 13.9 0.0 0.037 13.0 0.0 1.3 1 0 0 1 1 1 0 Multi-copper polyphenol oxidoreductase laccase CheC PF04509.7 gi|298675237|ref|YP_003726987.1| - 8e-19 67.0 1.2 3.4e-12 45.8 0.0 2.8 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|298675237|ref|YP_003726987.1| - 4.8e-14 51.9 3.2 2.9e-09 36.6 0.3 2.5 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX tRNA-synt_1b PF00579.20 gi|298675238|ref|YP_003726988.1| - 5.8e-56 189.7 0.1 6.9e-56 189.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|298675238|ref|YP_003726988.1| - 0.047 12.3 0.0 3 6.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DUF3654 PF12376.3 gi|298675239|ref|YP_003726989.1| - 0.0023 17.7 0.8 0.0046 16.7 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3654) DUF3375 PF11855.3 gi|298675239|ref|YP_003726989.1| - 0.024 13.4 0.9 0.035 12.8 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3375) YlqD PF11068.3 gi|298675239|ref|YP_003726989.1| - 0.035 14.1 1.3 0.39 10.7 0.0 2.8 3 0 0 3 3 3 0 YlqD protein Rabaptin PF03528.10 gi|298675239|ref|YP_003726989.1| - 0.23 11.3 4.8 4.5 7.2 1.2 2.5 1 1 0 2 2 2 0 Rabaptin DUF327 PF03885.8 gi|298675239|ref|YP_003726989.1| - 0.43 10.3 10.8 0.063 13.1 1.9 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF327) ThiF PF00899.16 gi|298675239|ref|YP_003726989.1| - 0.6 9.9 2.7 1.5 8.6 0.2 2.3 2 1 0 2 2 2 0 ThiF family DUF1664 PF07889.7 gi|298675239|ref|YP_003726989.1| - 0.61 9.8 3.4 17 5.2 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.2 gi|298675239|ref|YP_003726989.1| - 1.2 8.9 9.2 0.79 9.5 0.7 2.3 1 1 1 2 2 2 0 Tropomyosin like Prefoldin_2 PF01920.15 gi|298675239|ref|YP_003726989.1| - 1.3 8.8 7.6 3.4 7.4 0.4 2.6 2 0 0 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.4 gi|298675239|ref|YP_003726989.1| - 1.3 9.2 8.2 0.38 10.9 0.6 3.2 2 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Kinetocho_Slk19 PF12709.2 gi|298675239|ref|YP_003726989.1| - 5 7.2 7.5 23 5.1 3.6 2.8 1 1 1 2 2 2 0 Central kinetochore-associated UPF0118 PF01594.11 gi|298675240|ref|YP_003726990.1| - 4.5e-52 177.0 46.8 5.1e-52 176.8 32.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 P-II PF00543.17 gi|298675241|ref|YP_003726991.1| - 4.9e-05 23.7 0.4 6.5e-05 23.3 0.3 1.1 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF1538 PF07556.6 gi|298675242|ref|YP_003726992.1| - 1.5e-72 243.1 23.6 1.8e-72 242.8 16.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) DUF3681 PF12442.3 gi|298675242|ref|YP_003726992.1| - 2 8.6 4.6 26 5.0 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) DUF1304 PF06993.7 gi|298675242|ref|YP_003726992.1| - 2.6 7.8 13.2 1.2 8.8 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1304) DUF3185 PF11381.3 gi|298675242|ref|YP_003726992.1| - 6 6.7 15.3 0.24 11.1 0.7 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF1538 PF07556.6 gi|298675243|ref|YP_003726993.1| - 1.2e-64 217.3 32.7 1.4e-64 217.1 22.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1538) Internalin_N PF12354.3 gi|298675243|ref|YP_003726993.1| - 2.3 7.8 5.3 5.6 6.6 0.1 3.6 3 0 0 3 3 3 0 Bacterial adhesion/invasion protein N terminal Na_H_Exchanger PF00999.16 gi|298675244|ref|YP_003726994.1| - 1.6e-77 260.5 55.0 2e-77 260.2 38.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|298675244|ref|YP_003726994.1| - 2.5e-25 88.7 0.1 9.2e-25 86.9 0.1 2.1 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|298675244|ref|YP_003726994.1| - 3.8e-18 64.8 0.0 1.2e-17 63.2 0.0 1.9 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|298675244|ref|YP_003726994.1| - 0.021 14.8 0.0 0.075 13.0 0.0 1.8 2 0 0 2 2 2 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|298675244|ref|YP_003726994.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SSF PF00474.12 gi|298675245|ref|YP_003726995.1| - 1.6e-98 330.0 23.9 2.5e-98 329.4 16.6 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family OrfB_IS605 PF01385.14 gi|298675246|ref|YP_003726996.1| - 2.2e-48 164.6 0.3 4.7e-48 163.5 0.2 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675246|ref|YP_003726996.1| - 1.2e-09 37.6 0.4 5.4e-09 35.5 0.1 2.3 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298675246|ref|YP_003726996.1| - 0.0042 16.6 0.5 0.0098 15.4 0.3 1.6 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298675246|ref|YP_003726996.1| - 0.11 12.5 0.0 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0081) Acyl_transf_3 PF01757.17 gi|298675247|ref|YP_003726997.1| - 0.00039 19.3 3.8 0.00052 18.9 2.6 1.0 1 0 0 1 1 1 1 Acyltransferase family zf-DHHC PF01529.15 gi|298675247|ref|YP_003726997.1| - 0.011 15.1 0.2 0.017 14.5 0.2 1.3 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF2427 PF10348.4 gi|298675247|ref|YP_003726997.1| - 0.016 14.8 5.3 0.15 11.6 2.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2427) DUF989 PF06181.6 gi|298675247|ref|YP_003726997.1| - 0.039 13.0 0.2 0.063 12.3 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF989) DUF1129 PF06570.6 gi|298675247|ref|YP_003726997.1| - 0.16 11.2 3.2 1.1 8.4 2.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) DUF4231 PF14015.1 gi|298675247|ref|YP_003726997.1| - 0.36 10.8 2.5 27 4.8 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF3154 PF11351.3 gi|298675247|ref|YP_003726997.1| - 1.6 8.4 3.9 7.8 6.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3154) DUF485 PF04341.7 gi|298675247|ref|YP_003726997.1| - 5.1 6.8 7.8 5.8 6.7 0.2 2.6 2 1 1 3 3 3 0 Protein of unknown function, DUF485 SdpI PF13630.1 gi|298675247|ref|YP_003726997.1| - 6.3 6.5 14.2 4.6 7.0 0.7 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF4118 PF13493.1 gi|298675247|ref|YP_003726997.1| - 8.5 6.6 9.4 16 5.7 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4118) Ferric_reduct PF01794.14 gi|298675248|ref|YP_003726998.1| - 6.1e-05 23.1 6.2 6.1e-05 23.1 4.3 1.9 2 1 1 3 3 3 1 Ferric reductase like transmembrane component PAS_3 PF08447.6 gi|298675249|ref|YP_003726999.1| - 6.7e-49 163.9 6.2 3.4e-18 65.5 0.1 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|298675249|ref|YP_003726999.1| - 2.6e-21 75.9 1.1 1.6e-06 28.4 0.1 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|298675249|ref|YP_003726999.1| - 6e-10 38.9 0.1 4e-05 23.3 0.0 3.6 4 0 0 4 4 4 2 PAS fold GAF_2 PF13185.1 gi|298675249|ref|YP_003726999.1| - 3.7e-09 37.2 0.0 1.1e-08 35.6 0.0 1.8 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.1 gi|298675249|ref|YP_003726999.1| - 3.9e-06 26.7 0.0 0.01 15.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|298675249|ref|YP_003726999.1| - 0.002 18.1 0.0 3 7.9 0.0 3.1 3 0 0 3 3 3 2 PAS fold Raptor_N PF14538.1 gi|298675249|ref|YP_003726999.1| - 0.064 13.1 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Raptor N-terminal CASPase like domain GAF_3 PF13492.1 gi|298675249|ref|YP_003726999.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 GAF domain GAF PF01590.21 gi|298675249|ref|YP_003726999.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 GAF domain Desulfoferrodox PF01880.13 gi|298675250|ref|YP_003727000.1| - 2.8e-29 101.2 4.6 5e-28 97.2 3.2 2.0 1 1 0 1 1 1 1 Desulfoferrodoxin DUF870 PF05912.6 gi|298675250|ref|YP_003727000.1| - 0.029 14.1 0.1 0.036 13.8 0.1 1.3 1 0 0 1 1 1 0 Caenorhabditis elegans protein of unknown function (DUF870) DUF3671 PF12420.3 gi|298675251|ref|YP_003727001.1| - 0.11 12.4 1.7 0.13 12.2 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function SUR7 PF06687.7 gi|298675251|ref|YP_003727001.1| - 0.22 11.0 2.2 0.26 10.8 1.5 1.1 1 0 0 1 1 1 0 SUR7/PalI family FtsX PF02687.16 gi|298675251|ref|YP_003727001.1| - 5.1 6.8 7.8 13 5.5 5.4 1.7 1 1 0 1 1 1 0 FtsX-like permease family Tmemb_40 PF10160.4 gi|298675252|ref|YP_003727002.1| - 0.014 14.6 0.1 0.016 14.4 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein Tmemb_185A PF10269.4 gi|298675252|ref|YP_003727002.1| - 0.043 13.4 1.9 0.047 13.2 1.3 1.1 1 0 0 1 1 1 0 Transmembrane Fragile-X-F protein AA_permease PF00324.16 gi|298675253|ref|YP_003727003.1| - 1.1e-43 149.3 38.7 1.4e-43 148.9 26.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|298675253|ref|YP_003727003.1| - 2.9e-23 82.0 43.2 3.5e-23 81.8 29.9 1.1 1 0 0 1 1 1 1 Amino acid permease MtmB PF05369.7 gi|298675254|ref|YP_003727004.1| - 2e-276 916.2 2.3 2.2e-276 916.1 1.6 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB B12-binding_2 PF02607.12 gi|298675255|ref|YP_003727005.1| - 2.1e-22 78.9 0.0 3.6e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|298675255|ref|YP_003727005.1| - 1.8e-16 60.0 0.1 3.1e-16 59.3 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain TraC PF07820.7 gi|298675255|ref|YP_003727005.1| - 0.035 14.2 0.1 0.085 13.0 0.1 1.7 1 0 0 1 1 1 0 TraC-like protein SpoVAD PF07451.6 gi|298675255|ref|YP_003727005.1| - 0.16 10.4 0.8 3.4 6.0 0.1 2.1 1 1 1 2 2 2 0 Stage V sporulation protein AD (SpoVAD) Abhydrolase_5 PF12695.2 gi|298675256|ref|YP_003727006.1| - 8.5e-13 48.2 0.0 1.3e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|298675256|ref|YP_003727006.1| - 0.001 19.0 0.1 0.029 14.2 0.1 2.1 1 1 1 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.13 gi|298675256|ref|YP_003727006.1| - 0.0045 16.2 0.0 0.0064 15.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Chlorophyllase2 PF12740.2 gi|298675256|ref|YP_003727006.1| - 0.021 13.7 0.0 0.085 11.7 0.0 1.9 1 1 0 1 1 1 0 Chlorophyllase enzyme Abhydrolase_2 PF02230.11 gi|298675256|ref|YP_003727006.1| - 0.034 13.6 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|298675256|ref|YP_003727006.1| - 0.035 13.3 0.0 1.1 8.4 0.0 2.3 1 1 1 2 2 2 0 Prolyl oligopeptidase family DUF2627 PF11118.3 gi|298675256|ref|YP_003727006.1| - 3.7 7.7 9.8 0.33 11.0 0.1 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2627) SNARE_assoc PF09335.6 gi|298675257|ref|YP_003727007.1| - 1.5e-21 76.8 8.3 1.5e-21 76.8 5.8 2.0 3 0 0 3 3 3 1 SNARE associated Golgi protein CBS PF00571.23 gi|298675258|ref|YP_003727008.1| - 2.4e-29 100.8 2.0 1.5e-16 59.8 0.1 2.6 2 0 0 2 2 2 2 CBS domain Abhydrolase_1 PF00561.15 gi|298675258|ref|YP_003727008.1| - 8.5e-22 77.8 0.0 1.8e-21 76.8 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|298675258|ref|YP_003727008.1| - 1e-11 45.1 0.0 1.5e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|298675258|ref|YP_003727008.1| - 0.0097 15.6 0.0 0.085 12.6 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|298675258|ref|YP_003727008.1| - 0.061 12.7 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Ribosomal_L9_C PF03948.9 gi|298675258|ref|YP_003727008.1| - 0.083 12.9 0.0 29 4.8 0.0 3.2 3 0 0 3 3 3 0 Ribosomal protein L9, C-terminal domain Cys_Met_Meta_PP PF01053.15 gi|298675259|ref|YP_003727009.1| - 1.3e-140 468.0 0.0 1.5e-140 467.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|298675259|ref|YP_003727009.1| - 5.3e-13 48.7 0.0 9.8e-13 47.8 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|298675259|ref|YP_003727009.1| - 4e-07 29.3 0.0 5.8e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|298675259|ref|YP_003727009.1| - 2.9e-05 22.9 0.0 4.6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|298675259|ref|YP_003727009.1| - 0.032 12.5 0.8 0.21 9.8 0.5 2.0 1 1 0 1 1 1 0 Methionine gamma-lyase Beta_elim_lyase PF01212.16 gi|298675259|ref|YP_003727009.1| - 0.053 12.6 0.0 0.16 11.0 0.0 1.9 1 1 0 1 1 1 0 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|298675260|ref|YP_003727010.1| - 2.9e-50 170.8 0.0 5.2e-50 170.0 0.0 1.4 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|298675260|ref|YP_003727010.1| - 1.2e-15 57.2 0.0 1.8e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|298675260|ref|YP_003727010.1| - 4.3e-10 39.0 0.0 4.9e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II OKR_DC_1 PF01276.15 gi|298675260|ref|YP_003727010.1| - 0.003 16.1 0.0 0.0077 14.8 0.0 1.6 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain RNA_pol_L_2 PF13656.1 gi|298675261|ref|YP_003727011.1| - 1.2e-23 82.3 0.4 1.4e-23 82.0 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|298675261|ref|YP_003727011.1| - 1.1e-09 37.2 0.0 1.5e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Acylphosphatase PF00708.13 gi|298675261|ref|YP_003727011.1| - 0.063 13.3 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 Acylphosphatase ECR1_N PF14382.1 gi|298675262|ref|YP_003727012.1| - 1e-14 53.5 0.7 1.8e-14 52.7 0.5 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region HypA PF01155.14 gi|298675262|ref|YP_003727012.1| - 0.00048 19.7 0.1 0.00064 19.3 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|298675262|ref|YP_003727012.1| - 0.0045 16.7 1.6 0.0076 16.0 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|298675262|ref|YP_003727012.1| - 0.011 15.2 4.2 0.026 14.0 2.9 1.7 1 0 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|298675262|ref|YP_003727012.1| - 0.046 13.3 2.6 0.091 12.4 1.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain EXOSC1 PF10447.4 gi|298675262|ref|YP_003727012.1| - 0.056 13.3 0.5 0.17 11.8 0.3 1.8 1 0 0 1 1 1 0 Exosome component EXOSC1/CSL4 zf-ribbon_3 PF13248.1 gi|298675262|ref|YP_003727012.1| - 0.07 12.3 6.9 0.44 9.8 4.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|298675262|ref|YP_003727012.1| - 0.096 12.4 1.3 0.18 11.5 0.9 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|298675262|ref|YP_003727012.1| - 0.1 12.3 2.5 0.17 11.7 1.7 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|298675262|ref|YP_003727012.1| - 0.16 11.9 3.5 0.64 10.0 2.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-C3HC4 PF00097.20 gi|298675262|ref|YP_003727012.1| - 0.91 9.2 5.0 1.5 8.5 3.5 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.1 gi|298675262|ref|YP_003727012.1| - 1.4 8.6 7.3 9.5 6.0 3.6 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|298675262|ref|YP_003727012.1| - 1.7 8.7 4.2 10 6.2 0.8 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|298675262|ref|YP_003727012.1| - 1.8 7.9 5.6 1.7 7.9 0.8 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|298675262|ref|YP_003727012.1| - 1.8 8.2 7.1 9.3 5.9 3.5 2.7 2 1 0 2 2 2 0 zinc-ribbon domain MTS PF05175.9 gi|298675263|ref|YP_003727013.1| - 3.2e-14 52.6 0.0 4.5e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|298675263|ref|YP_003727013.1| - 1.2e-13 50.9 0.3 1.5e-13 50.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|298675263|ref|YP_003727013.1| - 8.2e-12 45.1 0.0 1.1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|298675263|ref|YP_003727013.1| - 4.1e-10 39.5 0.0 6e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|298675263|ref|YP_003727013.1| - 5.2e-09 36.6 0.0 7.5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298675263|ref|YP_003727013.1| - 6.3e-09 35.5 0.2 1.2e-08 34.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298675263|ref|YP_003727013.1| - 7.2e-07 29.5 0.1 3.6e-06 27.2 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298675263|ref|YP_003727013.1| - 0.00017 22.0 0.1 0.0004 20.8 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298675263|ref|YP_003727013.1| - 0.0018 18.0 0.0 0.002 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|298675263|ref|YP_003727013.1| - 0.0019 17.2 0.1 0.0027 16.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_15 PF09445.5 gi|298675263|ref|YP_003727013.1| - 0.0027 17.2 0.1 0.0038 16.8 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase EcoRI_methylase PF13651.1 gi|298675263|ref|YP_003727013.1| - 0.0043 16.1 0.0 0.006 15.6 0.0 1.2 1 0 0 1 1 1 1 Adenine-specific methyltransferase EcoRI N6_Mtase PF02384.11 gi|298675263|ref|YP_003727013.1| - 0.0085 15.2 0.0 0.037 13.0 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase Cons_hypoth95 PF03602.10 gi|298675263|ref|YP_003727013.1| - 0.012 15.0 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|298675263|ref|YP_003727013.1| - 0.038 14.4 0.0 0.071 13.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|298675263|ref|YP_003727013.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Diphthamide_syn PF01866.12 gi|298675264|ref|YP_003727014.1| - 1.3e-102 343.1 0.8 1.5e-102 342.9 0.5 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Pribosyltran PF00156.22 gi|298675265|ref|YP_003727015.1| - 4.3e-20 71.6 0.9 6.2e-20 71.1 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|298675265|ref|YP_003727015.1| - 0.00028 20.1 0.2 0.00041 19.6 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|298675265|ref|YP_003727015.1| - 0.0039 16.4 0.0 0.006 15.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase PDZ_2 PF13180.1 gi|298675265|ref|YP_003727015.1| - 0.021 14.7 1.2 0.051 13.4 0.6 1.8 1 1 0 1 1 1 0 PDZ domain OrfB_IS605 PF01385.14 gi|298675266|ref|YP_003727016.1| - 6.4e-54 182.7 6.5 8.5e-54 182.3 4.5 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675266|ref|YP_003727016.1| - 6.4e-12 44.9 0.0 1.3e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rubrerythrin PF02915.12 gi|298675267|ref|YP_003727017.1| - 1.3e-25 90.2 11.3 7.5e-25 87.8 7.8 1.9 1 1 0 1 1 1 1 Rubrerythrin PI3K_rbd PF00794.13 gi|298675267|ref|YP_003727017.1| - 0.0049 16.8 0.1 0.0066 16.3 0.0 1.2 1 0 0 1 1 1 1 PI3-kinase family, ras-binding domain Rubredoxin PF00301.15 gi|298675267|ref|YP_003727017.1| - 0.0056 16.5 8.2 0.019 14.8 3.5 2.6 2 1 0 2 2 2 1 Rubredoxin DZR PF12773.2 gi|298675267|ref|YP_003727017.1| - 0.0058 16.4 0.6 0.0097 15.7 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon RecR PF02132.10 gi|298675267|ref|YP_003727017.1| - 0.0083 15.5 1.2 0.019 14.4 0.8 1.6 1 0 0 1 1 1 1 RecR protein Prok-RING_1 PF14446.1 gi|298675267|ref|YP_003727017.1| - 0.0094 15.6 2.5 0.015 14.9 1.8 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|298675267|ref|YP_003727017.1| - 0.019 14.6 0.5 0.028 14.0 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|298675267|ref|YP_003727017.1| - 0.028 14.1 0.2 0.053 13.2 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ribosomal_L37e PF01907.14 gi|298675267|ref|YP_003727017.1| - 0.049 13.4 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Ferritin PF00210.19 gi|298675267|ref|YP_003727017.1| - 0.07 12.8 7.7 0.11 12.2 5.3 1.5 1 1 0 1 1 1 0 Ferritin-like domain zinc_ribbon_2 PF13240.1 gi|298675267|ref|YP_003727017.1| - 0.095 12.2 2.4 0.19 11.2 1.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|298675267|ref|YP_003727017.1| - 0.099 12.2 2.3 0.43 10.2 1.8 1.9 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DUF2492 PF10678.4 gi|298675267|ref|YP_003727017.1| - 0.1 12.6 0.3 0.72 9.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2492) A2L_zn_ribbon PF08792.5 gi|298675267|ref|YP_003727017.1| - 0.13 11.7 2.5 0.3 10.5 0.4 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RING_5 PF14634.1 gi|298675267|ref|YP_003727017.1| - 0.15 11.8 1.1 0.25 11.1 0.8 1.4 1 0 0 1 1 1 0 zinc-RING finger domain Zn-ribbon_8 PF09723.5 gi|298675267|ref|YP_003727017.1| - 0.63 10.0 3.0 4.4 7.3 2.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Rad50_zn_hook PF04423.9 gi|298675267|ref|YP_003727017.1| - 0.73 9.3 6.5 4.1 6.9 0.3 3.3 2 1 1 3 3 3 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.7 gi|298675267|ref|YP_003727017.1| - 1.6 8.1 7.6 2.7 7.3 0.9 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|298675267|ref|YP_003727017.1| - 2.7 7.3 5.5 31 3.9 3.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|298675267|ref|YP_003727017.1| - 3.1 7.2 9.0 0.15 11.4 1.8 1.9 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Pox_P35 PF03213.9 gi|298675268|ref|YP_003727018.1| - 6.4 5.6 6.3 4.3 6.2 0.6 2.1 1 1 1 2 2 2 0 Poxvirus P35 protein MarC PF01914.12 gi|298675269|ref|YP_003727019.1| - 3.7e-58 195.9 20.0 4.2e-58 195.8 13.8 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|298675269|ref|YP_003727019.1| - 0.047 12.9 12.3 0.09 12.0 8.4 1.6 1 1 0 1 1 1 0 LysE type translocator DUF4191 PF13829.1 gi|298675269|ref|YP_003727019.1| - 0.76 8.8 9.4 0.25 10.4 0.9 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) HMG-CoA_red PF00368.13 gi|298675270|ref|YP_003727020.1| - 2.3e-145 483.9 3.1 2.6e-145 483.7 2.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CorA PF01544.13 gi|298675271|ref|YP_003727021.1| - 2.9e-83 279.2 8.9 3.6e-83 278.9 6.2 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein RhoGAP PF00620.22 gi|298675271|ref|YP_003727021.1| - 0.08 12.5 0.1 1.9 8.0 0.0 2.8 3 0 0 3 3 3 0 RhoGAP domain Methyltransf_31 PF13847.1 gi|298675271|ref|YP_003727021.1| - 0.12 12.0 1.0 7.7 6.0 0.0 2.5 2 2 0 2 2 2 0 Methyltransferase domain DUF3753 PF12575.3 gi|298675271|ref|YP_003727021.1| - 0.22 11.3 8.7 0.84 9.4 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3753) Usp PF00582.21 gi|298675272|ref|YP_003727022.1| - 3.2e-35 121.3 0.0 4.2e-35 120.9 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|298675272|ref|YP_003727022.1| - 0.001 19.6 0.1 0.0015 19.0 0.1 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Usp PF00582.21 gi|298675273|ref|YP_003727023.1| - 2.6e-33 115.1 0.0 2.9e-33 115.0 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GAD PF02938.9 gi|298675273|ref|YP_003727023.1| - 0.0007 19.6 0.7 0.31 11.2 0.1 3.0 1 1 1 2 2 2 2 GAD domain Exotox-A_bind PF09101.5 gi|298675273|ref|YP_003727023.1| - 0.028 13.5 0.1 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Exotoxin A binding DXP_reductoisom PF02670.11 gi|298675273|ref|YP_003727023.1| - 0.051 14.1 0.1 0.064 13.7 0.1 1.3 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF3226 PF11536.3 gi|298675273|ref|YP_003727023.1| - 0.055 12.8 0.3 1.8 7.9 0.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3226) SRP54 PF00448.17 gi|298675273|ref|YP_003727023.1| - 0.087 12.2 0.1 0.45 9.9 0.0 1.8 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain DUF4471 PF14740.1 gi|298675274|ref|YP_003727024.1| - 0.022 13.9 0.2 0.031 13.4 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) GRAS PF03514.9 gi|298675274|ref|YP_003727024.1| - 0.049 12.3 0.2 0.048 12.3 0.2 1.1 1 0 0 1 1 1 0 GRAS domain family YkuI_C PF10388.4 gi|298675274|ref|YP_003727024.1| - 0.13 11.9 1.9 0.14 11.7 1.4 1.1 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain Aconitase PF00330.15 gi|298675275|ref|YP_003727025.1| - 2e-91 306.8 3.5 4.8e-63 213.2 0.1 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|298675275|ref|YP_003727025.1| - 0.026 13.0 0.0 0.041 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) MFS_3 PF05977.8 gi|298675275|ref|YP_003727025.1| - 0.093 10.8 0.0 0.8 7.7 0.0 2.0 2 0 0 2 2 2 0 Transmembrane secretion effector TrmB PF01978.14 gi|298675276|ref|YP_003727026.1| - 0.0016 18.0 0.1 0.0033 17.0 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|298675276|ref|YP_003727026.1| - 0.035 13.7 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|298675276|ref|YP_003727026.1| - 0.065 12.7 0.2 0.089 12.3 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit DUF387 PF04079.11 gi|298675276|ref|YP_003727026.1| - 0.075 12.4 0.0 0.14 11.5 0.0 1.5 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) DUF1752 PF08550.5 gi|298675276|ref|YP_003727026.1| - 0.095 12.2 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1752) HTH_27 PF13463.1 gi|298675276|ref|YP_003727026.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DnaJ PF00226.26 gi|298675277|ref|YP_003727027.1| - 1.6e-13 50.1 0.7 3.1e-13 49.2 0.5 1.6 1 1 0 1 1 1 1 DnaJ domain P-mevalo_kinase PF04275.9 gi|298675277|ref|YP_003727027.1| - 0.0079 15.9 0.8 0.011 15.4 0.5 1.2 1 1 0 1 1 1 1 Phosphomevalonate kinase DUF530 PF04409.7 gi|298675277|ref|YP_003727027.1| - 0.02 12.9 0.7 0.028 12.5 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF530) CMAS PF02353.15 gi|298675277|ref|YP_003727027.1| - 0.088 11.8 0.2 0.099 11.7 0.2 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase AhpC-TSA PF00578.16 gi|298675278|ref|YP_003727028.1| - 9.8e-36 122.1 0.0 1.3e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|298675278|ref|YP_003727028.1| - 8e-15 54.6 0.0 1.1e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|298675278|ref|YP_003727028.1| - 1.5e-14 53.3 1.2 2.5e-14 52.6 0.4 1.7 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin DUF4511 PF14974.1 gi|298675278|ref|YP_003727028.1| - 0.0051 16.5 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4511) PAP_fibrillin PF04755.7 gi|298675278|ref|YP_003727028.1| - 0.075 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 PAP_fibrillin FKBP_C PF00254.23 gi|298675279|ref|YP_003727029.1| - 1.3e-21 76.3 0.3 1.9e-21 75.8 0.2 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase tRNA_anti-codon PF01336.20 gi|298675280|ref|YP_003727030.1| - 5.5e-05 22.9 0.1 0.00012 21.8 0.1 1.6 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain DUF3198 PF11433.3 gi|298675280|ref|YP_003727030.1| - 0.0019 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3198) DUF4131 PF13567.1 gi|298675280|ref|YP_003727030.1| - 0.042 13.2 0.0 0.07 12.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) TAT_ubiq PF07706.7 gi|298675280|ref|YP_003727030.1| - 0.12 12.3 1.2 0.66 9.9 0.8 2.1 1 1 0 1 1 1 0 Aminotransferase ubiquitination site tRNA_anti-like PF12869.2 gi|298675280|ref|YP_003727030.1| - 0.2 11.1 1.2 0.43 10.0 0.0 1.8 1 1 1 2 2 2 0 tRNA_anti-like NTP_transferase PF00483.18 gi|298675281|ref|YP_003727031.1| - 4.8e-51 173.4 0.0 7.2e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|298675281|ref|YP_003727031.1| - 6.9e-20 69.6 21.7 5.3e-07 28.8 0.5 4.5 2 2 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|298675281|ref|YP_003727031.1| - 1.1e-10 41.7 0.0 1.5e-10 41.3 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|298675281|ref|YP_003727031.1| - 1.9e-08 33.7 18.0 0.00054 19.4 3.2 4.3 2 2 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase UPF0104 PF03706.8 gi|298675282|ref|YP_003727032.1| - 3.9e-44 151.1 20.3 4.9e-44 150.7 14.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Radical_SAM PF04055.16 gi|298675283|ref|YP_003727033.1| - 1.5e-20 74.0 0.0 4.4e-20 72.5 0.0 1.9 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|298675283|ref|YP_003727033.1| - 0.00029 20.7 0.2 0.0021 17.9 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|298675283|ref|YP_003727033.1| - 0.044 13.4 0.1 0.22 11.2 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|298675283|ref|YP_003727033.1| - 0.17 11.9 0.0 0.67 10.0 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif ILVD_EDD PF00920.16 gi|298675285|ref|YP_003727035.1| - 8.9e-218 723.9 0.9 1e-217 723.7 0.7 1.0 1 0 0 1 1 1 1 Dehydratase family Fer4 PF00037.22 gi|298675286|ref|YP_003727036.1| - 8e-12 44.2 33.8 0.0011 18.4 1.6 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675286|ref|YP_003727036.1| - 9.8e-12 45.0 25.3 6.1e-06 26.5 8.4 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|298675286|ref|YP_003727036.1| - 8.9e-09 35.1 16.3 1.3e-08 34.5 8.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675286|ref|YP_003727036.1| - 1.9e-08 34.4 27.9 6.5e-05 23.1 8.3 3.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675286|ref|YP_003727036.1| - 3.9e-08 32.8 35.3 0.0064 16.3 1.3 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298675286|ref|YP_003727036.1| - 9.6e-08 31.7 26.8 0.0009 19.0 6.4 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675286|ref|YP_003727036.1| - 1.4e-07 32.1 23.9 0.0081 16.8 0.4 4.3 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|298675286|ref|YP_003727036.1| - 2.1e-07 30.6 27.1 0.008 15.9 7.1 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675286|ref|YP_003727036.1| - 4.3e-07 29.4 37.4 0.001 18.8 2.0 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298675286|ref|YP_003727036.1| - 9.7e-07 28.6 36.3 0.004 17.3 1.6 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298675286|ref|YP_003727036.1| - 9.3e-05 22.7 44.8 0.19 12.3 5.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298675286|ref|YP_003727036.1| - 0.00015 22.0 27.2 0.19 12.0 0.9 3.5 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675286|ref|YP_003727036.1| - 0.00049 20.0 26.9 1.4 8.9 8.7 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298675286|ref|YP_003727036.1| - 0.0024 18.3 23.4 0.21 12.1 1.9 3.8 2 2 1 3 3 3 3 4Fe-4S single cluster domain AFOR_C PF01314.13 gi|298675287|ref|YP_003727037.1| - 3.8e-71 239.7 0.0 4.7e-71 239.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|298675287|ref|YP_003727037.1| - 1.3e-59 200.8 0.0 2.1e-59 200.2 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Pox_polyA_pol_C PF12629.2 gi|298675287|ref|YP_003727037.1| - 0.064 12.9 1.1 3.4 7.3 0.1 2.2 2 0 0 2 2 2 0 Poxvirus poly(A) polymerase C-terminal domain MtrH PF02007.13 gi|298675288|ref|YP_003727038.1| - 2.2e-135 450.4 0.7 2.5e-135 450.2 0.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit Pterin_bind PF00809.17 gi|298675288|ref|YP_003727038.1| - 0.0051 16.1 0.0 0.0097 15.2 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme CdhD PF03599.11 gi|298675288|ref|YP_003727038.1| - 0.0097 14.4 0.0 0.19 10.2 0.0 2.0 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit PrsW-protease PF13367.1 gi|298675289|ref|YP_003727039.1| - 2.1e-35 121.6 14.6 2.8e-35 121.2 10.1 1.2 1 0 0 1 1 1 1 Protease prsW family DUF2324 PF10086.4 gi|298675289|ref|YP_003727039.1| - 2.5e-17 62.8 10.5 2.9e-13 49.5 2.3 3.0 1 1 1 2 2 2 2 Putative membrane peptidase family (DUF2324) TMEMspv1-c74-12 PF11044.3 gi|298675289|ref|YP_003727039.1| - 3.8 7.1 6.5 13 5.4 0.0 3.1 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein MtrA PF04208.9 gi|298675290|ref|YP_003727040.1| - 1.5e-61 206.9 0.2 1.9e-61 206.5 0.2 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A PTA_PTB PF01515.14 gi|298675291|ref|YP_003727041.1| - 8.8e-05 21.7 0.2 0.25 10.3 0.0 2.6 2 1 1 3 3 3 2 Phosphate acetyl/butaryl transferase OrfB_IS605 PF01385.14 gi|298675293|ref|YP_003727043.1| - 7.6e-46 156.3 6.6 7.6e-46 156.3 4.6 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675293|ref|YP_003727043.1| - 3.6e-24 84.1 0.4 7.1e-24 83.2 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675293|ref|YP_003727043.1| - 7.7e-22 76.3 2.8 2.8e-20 71.3 1.2 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain M_domain PF12938.2 gi|298675293|ref|YP_003727043.1| - 0.9 9.2 5.8 0.23 11.2 1.7 1.7 2 0 0 2 2 2 0 M domain of GW182 Phage_GP20 PF06810.6 gi|298675293|ref|YP_003727043.1| - 1.3 8.4 12.4 0.14 11.5 2.0 2.9 3 0 0 3 3 3 0 Phage minor structural protein GP20 Rad17 PF03215.10 gi|298675294|ref|YP_003727044.1| - 2.7e-15 56.0 1.4 2.7e-07 29.6 0.3 3.0 2 1 1 3 3 3 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|298675294|ref|YP_003727044.1| - 3e-10 40.3 0.9 1.1e-09 38.5 0.0 2.4 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298675294|ref|YP_003727044.1| - 3e-07 30.6 0.1 0.00021 21.4 0.0 3.4 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|298675294|ref|YP_003727044.1| - 0.00035 19.7 0.0 0.0016 17.5 0.0 2.1 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|298675294|ref|YP_003727044.1| - 0.00047 20.0 0.1 0.0058 16.5 0.0 2.7 2 1 0 3 3 3 1 AAA domain TIP49 PF06068.8 gi|298675294|ref|YP_003727044.1| - 0.00062 18.5 0.1 0.51 8.9 0.1 2.2 2 0 0 2 2 2 2 TIP49 C-terminus AAA_16 PF13191.1 gi|298675294|ref|YP_003727044.1| - 0.00082 19.4 0.4 0.014 15.3 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|298675294|ref|YP_003727044.1| - 0.0029 18.4 3.3 0.0061 17.3 0.0 2.9 3 1 0 3 3 3 1 AAA domain DUF815 PF05673.8 gi|298675294|ref|YP_003727044.1| - 0.01 14.7 0.0 0.036 12.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|298675294|ref|YP_003727044.1| - 0.015 14.9 0.8 0.044 13.3 0.6 1.8 1 1 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|298675294|ref|YP_003727044.1| - 0.019 14.5 0.4 11 5.6 0.1 3.4 3 0 0 3 3 3 0 Bacterial dnaA protein IPT PF01745.11 gi|298675294|ref|YP_003727044.1| - 0.04 13.0 0.0 0.12 11.5 0.0 1.8 1 0 0 1 1 1 0 Isopentenyl transferase NACHT PF05729.7 gi|298675294|ref|YP_003727044.1| - 0.057 13.0 0.0 0.46 10.1 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|298675294|ref|YP_003727044.1| - 0.076 12.7 0.1 0.34 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Topo-VIb_trans PF09239.6 gi|298675295|ref|YP_003727045.1| - 2.2e-70 235.3 0.0 4e-70 234.4 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|298675295|ref|YP_003727045.1| - 1e-12 47.7 0.0 4.2e-12 45.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|298675295|ref|YP_003727045.1| - 7.4e-10 38.6 0.0 1.8e-09 37.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|298675295|ref|YP_003727045.1| - 0.013 14.0 0.0 0.027 13.0 0.0 1.4 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HATPase_c_2 PF13581.1 gi|298675295|ref|YP_003727045.1| - 0.026 14.3 0.0 0.068 12.9 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain MAP65_ASE1 PF03999.7 gi|298675295|ref|YP_003727045.1| - 0.058 11.9 0.4 0.088 11.4 0.3 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Ribosomal_S13 PF00416.17 gi|298675295|ref|YP_003727045.1| - 0.062 13.7 0.2 1.3 9.4 0.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S13/S18 MAF_flag10 PF01973.13 gi|298675295|ref|YP_003727045.1| - 0.087 12.3 0.0 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF115 TP6A_N PF04406.9 gi|298675296|ref|YP_003727046.1| - 1.8e-18 65.9 0.1 3.5e-18 65.0 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase OrfB_IS605 PF01385.14 gi|298675297|ref|YP_003727047.1| - 1.1e-51 175.3 2.4 1.1e-51 175.3 1.6 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675297|ref|YP_003727047.1| - 1.1e-11 44.1 0.1 5e-11 42.0 0.0 2.2 2 1 0 2 2 2 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298675297|ref|YP_003727047.1| - 0.0048 17.0 0.0 0.0096 16.0 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) DNA_gyraseB PF00204.20 gi|298675298|ref|YP_003727048.1| - 2e-63 212.7 0.1 3.4e-63 211.9 0.1 1.4 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|298675298|ref|YP_003727048.1| - 2.6e-31 107.1 0.2 4.9e-31 106.2 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|298675298|ref|YP_003727048.1| - 7.2e-24 83.6 0.0 2.2e-23 82.1 0.0 1.9 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|298675298|ref|YP_003727048.1| - 1.3e-17 63.5 0.0 3e-17 62.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|298675298|ref|YP_003727048.1| - 0.002 17.7 0.3 0.0085 15.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|298675299|ref|YP_003727049.1| - 3e-158 527.1 1.4 4.3e-158 526.6 1.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|298675299|ref|YP_003727049.1| - 7.3e-70 230.0 16.6 6.8e-16 57.3 0.1 6.5 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller ATG16 PF08614.6 gi|298675299|ref|YP_003727049.1| - 0.056 13.2 6.6 0.11 12.3 4.5 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) SOR_SNZ PF01680.12 gi|298675300|ref|YP_003727050.1| - 1e-106 355.1 6.9 1.5e-106 354.6 4.8 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|298675300|ref|YP_003727050.1| - 3.4e-09 36.1 7.1 7.1e-08 31.8 0.2 2.4 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|298675300|ref|YP_003727050.1| - 7.9e-05 21.9 4.8 0.0018 17.5 0.1 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase NanE PF04131.9 gi|298675300|ref|YP_003727050.1| - 0.0003 19.8 2.6 0.01 14.7 0.1 2.6 2 1 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|298675300|ref|YP_003727050.1| - 0.0006 18.8 0.2 0.018 13.9 0.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF561) IGPS PF00218.16 gi|298675300|ref|YP_003727050.1| - 0.00068 18.7 0.0 0.0068 15.4 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Dus PF01207.12 gi|298675300|ref|YP_003727050.1| - 0.0037 16.1 0.2 1 8.1 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|298675300|ref|YP_003727050.1| - 0.0067 15.7 0.3 0.0067 15.7 0.2 1.8 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|298675300|ref|YP_003727050.1| - 0.063 12.5 0.7 0.26 10.5 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein SNO PF01174.14 gi|298675301|ref|YP_003727051.1| - 3.8e-52 176.6 0.0 4.3e-52 176.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|298675301|ref|YP_003727051.1| - 1.1e-09 38.0 0.1 2.1e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|298675301|ref|YP_003727051.1| - 4e-08 32.9 0.1 1.7e-07 30.9 0.1 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|298675301|ref|YP_003727051.1| - 1.2e-05 25.0 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 DUF4066 PF13278.1 gi|298675301|ref|YP_003727051.1| - 0.0021 17.3 0.0 0.0037 16.5 0.0 1.4 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|298675301|ref|YP_003727051.1| - 0.0046 16.4 0.1 0.035 13.5 0.0 2.3 2 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|298675301|ref|YP_003727051.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family Pyridox_oxidase PF01243.15 gi|298675302|ref|YP_003727052.1| - 3.7e-18 65.3 0.0 4.6e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|298675302|ref|YP_003727052.1| - 0.015 14.8 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Ribosomal_S6e PF01092.14 gi|298675303|ref|YP_003727053.1| - 1.7e-34 118.2 1.7 1.9e-34 118.0 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|298675304|ref|YP_003727054.1| - 5.2e-34 117.3 0.5 2.8e-33 114.9 0.0 2.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|298675304|ref|YP_003727054.1| - 1.3e-23 82.9 4.2 1.3e-23 82.9 2.9 2.3 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|298675304|ref|YP_003727054.1| - 2.9e-14 52.4 8.2 7.2e-14 51.1 5.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|298675304|ref|YP_003727054.1| - 8.8e-10 38.5 11.6 1.1e-09 38.1 0.1 3.2 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|298675304|ref|YP_003727054.1| - 3.3e-07 30.2 0.4 9e-07 28.8 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|298675304|ref|YP_003727054.1| - 0.00065 19.3 0.0 0.0028 17.2 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|298675304|ref|YP_003727054.1| - 0.0046 17.4 0.0 0.012 16.0 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein PduV-EutP PF10662.4 gi|298675304|ref|YP_003727054.1| - 0.016 14.7 0.5 0.2 11.1 0.0 2.9 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|298675304|ref|YP_003727054.1| - 0.023 14.1 0.3 4.5 6.6 0.0 2.7 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|298675304|ref|YP_003727054.1| - 0.046 13.5 0.6 2.1 8.1 0.1 2.9 3 0 0 3 3 3 0 Dynamin family NDK PF00334.14 gi|298675305|ref|YP_003727055.1| - 4.4e-57 191.6 0.5 5e-57 191.4 0.3 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GHL6 PF14871.1 gi|298675305|ref|YP_003727055.1| - 0.023 14.7 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Ribosomal_L24e PF01246.15 gi|298675306|ref|YP_003727056.1| - 2.3e-21 75.4 0.5 2.3e-21 75.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|298675306|ref|YP_003727056.1| - 2e-07 30.5 4.0 2.6e-07 30.1 2.8 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|298675306|ref|YP_003727056.1| - 0.00018 21.3 3.0 0.00025 20.8 2.1 1.3 1 0 0 1 1 1 1 YHS domain DUF2116 PF09889.4 gi|298675306|ref|YP_003727056.1| - 0.019 14.7 0.3 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-MYND PF01753.13 gi|298675306|ref|YP_003727056.1| - 0.032 14.1 2.0 0.046 13.5 1.4 1.3 1 0 0 1 1 1 0 MYND finger RNA_POL_M_15KD PF02150.11 gi|298675306|ref|YP_003727056.1| - 0.034 13.8 0.6 0.1 12.2 0.4 1.8 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit SerH PF06873.6 gi|298675306|ref|YP_003727056.1| - 0.11 11.0 0.0 0.12 10.9 0.0 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH Zn_ribbon_recom PF13408.1 gi|298675306|ref|YP_003727056.1| - 0.13 12.5 2.7 0.17 12.1 1.9 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C4_ClpX PF06689.8 gi|298675306|ref|YP_003727056.1| - 0.14 11.7 0.1 0.14 11.7 0.1 1.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger Arc_trans_TRASH PF08394.5 gi|298675306|ref|YP_003727056.1| - 0.2 11.8 2.3 0.54 10.4 1.6 1.8 1 1 0 1 1 1 0 Archaeal TRASH domain DUF581 PF04570.9 gi|298675306|ref|YP_003727056.1| - 0.38 10.0 3.6 0.7 9.2 2.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF581) DUF329 PF03884.9 gi|298675306|ref|YP_003727056.1| - 0.56 9.7 3.2 2.6 7.6 2.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF329) Ribosomal_S28e PF01200.13 gi|298675307|ref|YP_003727057.1| - 1.6e-29 101.4 0.6 1.7e-29 101.3 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|298675308|ref|YP_003727058.1| - 2.2e-28 97.5 0.2 2.7e-28 97.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF1269 PF06897.7 gi|298675308|ref|YP_003727058.1| - 0.012 15.6 0.0 2.8 8.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Radical_SAM PF04055.16 gi|298675310|ref|YP_003727060.1| - 8.3e-20 71.6 0.0 2.8e-19 69.9 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298675310|ref|YP_003727060.1| - 1.2e-05 25.4 0.6 2.8e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|298675310|ref|YP_003727060.1| - 0.0043 16.2 2.0 0.0043 16.2 1.4 2.6 3 1 0 3 3 3 1 zinc-ribbon domain DZR PF12773.2 gi|298675310|ref|YP_003727060.1| - 0.0045 16.7 0.2 0.0045 16.7 0.1 3.0 3 0 0 3 3 3 1 Double zinc ribbon DUF2614 PF11023.3 gi|298675310|ref|YP_003727060.1| - 0.015 15.1 0.3 0.051 13.3 0.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2614) Fer4_14 PF13394.1 gi|298675310|ref|YP_003727060.1| - 0.017 15.1 1.1 0.076 13.0 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.1 gi|298675310|ref|YP_003727060.1| - 0.13 11.7 11.8 0.15 11.6 0.2 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zf-BED PF02892.10 gi|298675310|ref|YP_003727060.1| - 2.6 7.8 14.9 3.1 7.6 0.4 3.7 3 1 1 4 4 4 0 BED zinc finger DUF1272 PF06906.6 gi|298675310|ref|YP_003727060.1| - 2.8 7.8 11.7 1.8 8.4 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF1272) UPF0547 PF10571.4 gi|298675310|ref|YP_003727060.1| - 3.7 7.3 10.9 0.23 11.1 0.3 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|298675310|ref|YP_003727060.1| - 4.2 7.4 6.6 17 5.4 0.0 4.0 4 0 0 4 4 4 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|298675310|ref|YP_003727060.1| - 7.2 6.5 9.5 1.3 8.8 0.3 3.2 3 1 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like NEAT PF05031.7 gi|298675311|ref|YP_003727061.1| - 0.0055 16.7 6.6 0.037 14.0 0.4 2.6 2 1 0 2 2 2 2 Iron Transport-associated domain DUF1628 PF07790.6 gi|298675312|ref|YP_003727062.1| - 8.2e-19 68.1 1.6 8.2e-19 68.1 1.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Orbi_NS3 PF01616.11 gi|298675312|ref|YP_003727062.1| - 0.094 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Orbivirus NS3 T2SF PF00482.18 gi|298675313|ref|YP_003727063.1| - 2.7e-29 101.5 1.3 2.4e-16 59.7 0.2 3.0 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|298675313|ref|YP_003727063.1| - 0.18 10.5 12.9 0.25 10.0 1.7 2.3 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin DUF16 PF01519.11 gi|298675313|ref|YP_003727063.1| - 2 8.6 6.1 0.18 12.0 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function DUF16 T2SE PF00437.15 gi|298675314|ref|YP_003727064.1| - 4.9e-43 146.9 0.0 7.7e-43 146.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|298675314|ref|YP_003727064.1| - 0.011 15.1 0.0 0.028 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|298675314|ref|YP_003727064.1| - 0.16 11.3 0.2 16 4.8 0.0 2.7 2 1 0 2 2 2 0 FtsK/SpoIIIE family PfkB PF00294.19 gi|298675315|ref|YP_003727065.1| - 3.3e-46 157.8 0.0 4.3e-46 157.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF555 PF04475.7 gi|298675316|ref|YP_003727066.1| - 2.8e-50 168.5 0.1 3.2e-50 168.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) UPF0081 PF03652.10 gi|298675316|ref|YP_003727066.1| - 0.024 14.7 0.0 0.03 14.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) Dodecin PF07311.7 gi|298675316|ref|YP_003727066.1| - 0.089 12.8 0.4 0.95 9.5 0.0 2.4 3 0 0 3 3 3 0 Dodecin DUF357 PF04010.8 gi|298675317|ref|YP_003727067.1| - 3.1e-30 103.6 0.4 3.6e-30 103.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TPR_1 PF00515.23 gi|298675317|ref|YP_003727067.1| - 0.0087 15.6 1.8 0.02 14.5 0.0 2.3 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|298675317|ref|YP_003727067.1| - 0.023 14.3 0.6 0.049 13.2 0.1 1.8 2 0 0 2 2 2 0 TPR repeat DUF87 PF01935.12 gi|298675318|ref|YP_003727068.1| - 1.6e-38 132.7 0.1 2.8e-38 132.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|298675318|ref|YP_003727068.1| - 2.1e-24 86.5 0.0 3.2e-24 85.9 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|298675318|ref|YP_003727068.1| - 1.1e-06 28.3 0.1 3.4e-06 26.8 0.1 1.8 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|298675318|ref|YP_003727068.1| - 9.7e-05 20.9 0.0 0.13 10.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|298675318|ref|YP_003727068.1| - 0.00064 19.2 0.0 0.0046 16.4 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|298675318|ref|YP_003727068.1| - 0.0015 18.0 0.0 0.051 13.0 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|298675318|ref|YP_003727068.1| - 0.011 14.3 0.0 0.62 8.6 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Pigment_DH PF06324.6 gi|298675318|ref|YP_003727068.1| - 0.044 13.0 0.2 0.1 11.8 0.2 1.6 1 0 0 1 1 1 0 Pigment-dispersing hormone (PDH) TraG-D_C PF12696.2 gi|298675318|ref|YP_003727068.1| - 0.059 13.2 1.1 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG TP_methylase PF00590.15 gi|298675319|ref|YP_003727069.1| - 9.1e-16 58.1 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1248 PF06852.7 gi|298675319|ref|YP_003727069.1| - 0.0015 17.8 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1248) Cpn60_TCP1 PF00118.19 gi|298675320|ref|YP_003727070.1| - 1.9e-150 501.7 12.6 2.1e-150 501.5 8.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF2119 PF09892.4 gi|298675321|ref|YP_003727071.1| - 1.4e-70 236.4 0.7 1.7e-70 236.2 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2119) Peptidase_M14 PF00246.19 gi|298675321|ref|YP_003727071.1| - 0.025 14.1 0.0 2.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Zinc carboxypeptidase DUF4250 PF14056.1 gi|298675321|ref|YP_003727071.1| - 0.026 14.2 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) S4 PF01479.20 gi|298675322|ref|YP_003727072.1| - 1.5e-10 40.3 0.2 2.8e-10 39.4 0.1 1.5 1 0 0 1 1 1 1 S4 domain Methyltransf_31 PF13847.1 gi|298675322|ref|YP_003727072.1| - 3.8e-09 36.3 0.2 5.2e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|298675322|ref|YP_003727072.1| - 1.5e-08 34.8 0.0 2.7e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|298675322|ref|YP_003727072.1| - 1e-05 25.2 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|298675322|ref|YP_003727072.1| - 1.3e-05 24.2 0.1 2e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.2 gi|298675322|ref|YP_003727072.1| - 7.1e-05 23.3 0.0 0.00013 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298675322|ref|YP_003727072.1| - 0.0005 20.0 0.0 0.00082 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298675322|ref|YP_003727072.1| - 0.0015 18.9 0.0 0.0031 17.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|298675322|ref|YP_003727072.1| - 0.026 14.1 0.2 0.047 13.2 0.1 1.4 1 0 0 1 1 1 0 S4 domain Methyltransf_24 PF13578.1 gi|298675322|ref|YP_003727072.1| - 0.081 13.7 0.0 0.18 12.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Response_reg PF00072.19 gi|298675322|ref|YP_003727072.1| - 0.097 12.6 0.4 0.18 11.8 0.1 1.7 2 0 0 2 2 2 0 Response regulator receiver domain Oxidored_FMN PF00724.15 gi|298675323|ref|YP_003727073.1| - 2.5e-80 270.0 0.1 2.8e-80 269.8 0.1 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|298675323|ref|YP_003727073.1| - 0.00018 20.4 0.0 0.00087 18.2 0.0 1.8 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|298675323|ref|YP_003727073.1| - 0.0021 17.3 0.1 0.0048 16.1 0.1 1.6 1 1 0 1 1 1 1 Histidine biosynthesis protein HMGL-like PF00682.14 gi|298675323|ref|YP_003727073.1| - 0.0026 17.4 0.1 0.009 15.6 0.0 1.9 2 0 0 2 2 2 1 HMGL-like DUF561 PF04481.7 gi|298675323|ref|YP_003727073.1| - 0.011 14.6 0.4 0.027 13.4 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF561) TnpV PF14198.1 gi|298675324|ref|YP_003727074.1| - 0.044 13.6 0.4 0.15 11.9 0.1 2.0 2 0 0 2 2 2 0 Transposon-encoded protein TnpV DUF111 PF01969.12 gi|298675325|ref|YP_003727075.1| - 5.5e-18 64.9 0.0 6.6e-18 64.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF111 OrfB_IS605 PF01385.14 gi|298675326|ref|YP_003727076.1| - 6.2e-35 120.6 2.0 1.5e-34 119.3 1.4 1.6 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675326|ref|YP_003727076.1| - 4.2e-24 83.9 1.4 4.2e-24 83.9 1.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675326|ref|YP_003727076.1| - 1.1e-13 50.2 1.7 1.3e-13 49.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DZR PF12773.2 gi|298675326|ref|YP_003727076.1| - 0.0004 20.1 0.9 0.00089 19.0 0.6 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|298675326|ref|YP_003727076.1| - 0.0024 17.2 1.2 0.58 9.7 0.2 2.6 2 0 0 2 2 2 2 zinc-ribbon domain Remorin_C PF03763.8 gi|298675326|ref|YP_003727076.1| - 0.013 14.9 1.6 0.029 13.8 1.1 1.6 1 0 0 1 1 1 0 Remorin, C-terminal region Zn_Tnp_IS1595 PF12760.2 gi|298675326|ref|YP_003727076.1| - 0.017 14.9 1.4 0.042 13.6 1.0 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|298675326|ref|YP_003727076.1| - 0.038 13.3 2.1 0.19 11.0 1.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|298675326|ref|YP_003727076.1| - 0.44 9.8 6.3 3.2 7.1 0.4 2.7 1 1 2 3 3 3 0 zinc-ribbon domain DUF2115 PF09888.4 gi|298675327|ref|YP_003727077.1| - 1.7e-48 164.7 5.4 1.9e-48 164.6 3.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) Erf4 PF10256.4 gi|298675327|ref|YP_003727077.1| - 0.0053 16.6 1.2 0.02 14.7 0.1 2.0 1 1 1 2 2 2 1 Golgin subfamily A member 7/ERF4 family DUF2443 PF10398.4 gi|298675327|ref|YP_003727077.1| - 0.049 13.4 0.6 0.1 12.3 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2443) REGB_T4 PF10715.4 gi|298675327|ref|YP_003727077.1| - 0.049 13.7 1.2 0.075 13.1 0.9 1.3 1 0 0 1 1 1 0 Endoribonuclease RegB T4-bacteriophage encoded Peptidase_M85 PF13678.1 gi|298675327|ref|YP_003727077.1| - 0.056 12.8 1.8 0.082 12.2 0.2 1.7 1 1 1 2 2 2 0 NFkB-p65-degrading zinc protease Cytochrom_C_asm PF01578.15 gi|298675328|ref|YP_003727078.1| - 8.9e-30 103.8 14.7 8.9e-30 103.8 10.2 2.0 2 0 0 2 2 2 1 Cytochrome C assembly protein SUR7 PF06687.7 gi|298675328|ref|YP_003727078.1| - 0.11 12.0 10.4 0.06 12.8 2.0 3.0 2 1 0 2 2 2 0 SUR7/PalI family YesK PF14150.1 gi|298675328|ref|YP_003727078.1| - 0.21 11.7 0.1 0.21 11.7 0.1 3.9 3 1 1 4 4 4 0 YesK-like protein BCHF PF07284.6 gi|298675328|ref|YP_003727078.1| - 0.31 10.8 12.2 0.02 14.7 3.2 2.5 3 0 0 3 3 3 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) PRCH PF03967.8 gi|298675328|ref|YP_003727078.1| - 0.4 10.2 5.1 1.7 8.2 0.2 2.4 2 0 0 2 2 2 0 Photosynthetic reaction centre, H-chain N-terminal region OST3_OST6 PF04756.8 gi|298675328|ref|YP_003727078.1| - 1.4 8.5 10.4 0.14 11.6 1.1 3.1 4 0 0 4 4 4 0 OST3 / OST6 family DUF998 PF06197.8 gi|298675328|ref|YP_003727078.1| - 7 5.9 20.9 8.3 5.6 8.4 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF998) UPF0182 PF03699.8 gi|298675328|ref|YP_003727078.1| - 7.7 4.2 6.9 2.1 6.1 2.2 1.7 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0182) CcmB PF03379.8 gi|298675329|ref|YP_003727079.1| - 4.4e-34 117.5 19.1 4.9e-34 117.4 13.2 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.19 gi|298675329|ref|YP_003727079.1| - 8.6e-14 51.2 19.6 8.6e-14 51.2 13.6 1.5 1 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|298675329|ref|YP_003727079.1| - 2e-05 23.8 22.7 2e-05 23.8 15.7 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675329|ref|YP_003727079.1| - 0.0043 16.2 34.5 0.013 14.7 23.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|298675330|ref|YP_003727080.1| - 9.2e-35 119.9 0.0 1.5e-34 119.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675330|ref|YP_003727080.1| - 7.4e-14 52.3 2.7 2e-11 44.3 1.8 2.3 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|298675330|ref|YP_003727080.1| - 3.6e-06 25.7 1.2 0.00012 20.6 0.2 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|298675330|ref|YP_003727080.1| - 3.3e-05 23.2 2.1 0.0068 15.6 1.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|298675330|ref|YP_003727080.1| - 4e-05 23.8 0.1 0.00016 21.8 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|298675330|ref|YP_003727080.1| - 4.1e-05 23.0 0.1 7.3e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|298675330|ref|YP_003727080.1| - 6.9e-05 23.2 6.2 0.00016 22.0 4.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|298675330|ref|YP_003727080.1| - 0.00044 19.9 0.3 0.00077 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675330|ref|YP_003727080.1| - 0.00091 19.3 1.1 0.022 14.8 0.6 2.3 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|298675330|ref|YP_003727080.1| - 0.0013 19.5 0.4 0.0039 18.0 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|298675330|ref|YP_003727080.1| - 0.0021 18.0 0.0 0.0046 16.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|298675330|ref|YP_003727080.1| - 0.0055 15.9 0.2 0.0095 15.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NACHT PF05729.7 gi|298675330|ref|YP_003727080.1| - 0.0057 16.3 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.17 gi|298675330|ref|YP_003727080.1| - 0.007 15.2 2.4 0.29 9.9 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.1 gi|298675330|ref|YP_003727080.1| - 0.0092 15.8 0.1 0.16 11.8 0.0 2.4 1 1 1 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|298675330|ref|YP_003727080.1| - 0.015 14.3 0.5 0.026 13.5 0.1 1.6 2 0 0 2 2 2 0 KAP family P-loop domain AAA_30 PF13604.1 gi|298675330|ref|YP_003727080.1| - 0.018 14.6 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|298675330|ref|YP_003727080.1| - 0.021 14.0 0.0 0.038 13.2 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit UPF0079 PF02367.12 gi|298675330|ref|YP_003727080.1| - 0.029 14.0 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|298675330|ref|YP_003727080.1| - 0.03 14.6 0.5 0.13 12.6 0.3 2.2 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|298675330|ref|YP_003727080.1| - 0.041 13.3 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|298675330|ref|YP_003727080.1| - 0.043 13.5 1.7 0.16 11.6 1.2 2.0 1 1 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|298675330|ref|YP_003727080.1| - 0.049 13.8 0.1 0.26 11.4 0.0 2.2 2 1 0 2 2 2 0 RNA helicase Mg_chelatase PF01078.16 gi|298675330|ref|YP_003727080.1| - 0.05 12.7 0.0 0.11 11.6 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|298675330|ref|YP_003727080.1| - 0.051 12.9 0.7 2.7 7.3 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|298675330|ref|YP_003727080.1| - 0.052 12.9 0.1 0.74 9.1 0.0 2.1 1 1 0 2 2 2 0 AAA-like domain Sigma54_activ_2 PF14532.1 gi|298675330|ref|YP_003727080.1| - 0.055 13.5 0.0 0.41 10.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain cobW PF02492.14 gi|298675330|ref|YP_003727080.1| - 0.056 12.8 0.0 0.078 12.4 0.0 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|298675330|ref|YP_003727080.1| - 0.065 13.1 0.2 0.16 11.9 0.1 1.7 2 0 0 2 2 1 0 AAA domain ATP-synt_ab PF00006.20 gi|298675330|ref|YP_003727080.1| - 0.1 12.0 0.1 0.1 12.0 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|298675330|ref|YP_003727080.1| - 0.11 12.2 0.0 0.53 10.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|298675330|ref|YP_003727080.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|298675330|ref|YP_003727080.1| - 0.13 11.6 0.1 0.52 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|298675330|ref|YP_003727080.1| - 0.15 11.9 0.1 0.71 9.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain OrfB_IS605 PF01385.14 gi|298675331|ref|YP_003727081.1| - 1.4e-50 171.8 2.2 1.4e-50 171.8 1.5 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675331|ref|YP_003727081.1| - 1.4e-11 43.8 0.3 4.6e-11 42.2 0.1 2.0 2 1 0 2 2 2 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298675331|ref|YP_003727081.1| - 0.0091 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) DUF3825 PF12873.2 gi|298675331|ref|YP_003727081.1| - 0.29 10.2 6.6 0.04 13.0 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3825) Y1_Tnp PF01797.11 gi|298675332|ref|YP_003727082.1| - 9.3e-27 93.2 1.5 1.1e-26 93.0 1.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Molydop_binding PF01568.16 gi|298675333|ref|YP_003727083.1| - 5.7e-13 48.6 0.0 8e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|298675333|ref|YP_003727083.1| - 0.00099 19.0 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain SAM_1 PF00536.25 gi|298675333|ref|YP_003727083.1| - 0.0047 17.0 0.1 0.01 15.9 0.0 1.5 1 0 0 1 1 1 1 SAM domain (Sterile alpha motif) TPP_enzyme_M PF00205.17 gi|298675334|ref|YP_003727084.1| - 0.00045 19.9 0.1 0.11 12.3 0.0 2.8 2 1 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain FeS PF04060.8 gi|298675335|ref|YP_003727085.1| - 2.2e-15 55.9 1.8 2.2e-15 55.9 1.2 2.9 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4 PF00037.22 gi|298675335|ref|YP_003727085.1| - 4e-11 42.0 21.8 2.2e-08 33.3 3.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298675335|ref|YP_003727085.1| - 7.6e-10 38.9 29.8 4.9e-07 29.9 8.2 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675335|ref|YP_003727085.1| - 4e-08 33.5 17.7 0.00042 20.6 7.4 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675335|ref|YP_003727085.1| - 8.3e-08 31.7 18.7 4e-07 29.5 2.6 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298675335|ref|YP_003727085.1| - 3.9e-07 29.6 12.4 3.6e-06 26.5 2.5 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298675335|ref|YP_003727085.1| - 6.7e-07 29.2 11.4 1e-05 25.4 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675335|ref|YP_003727085.1| - 2.3e-06 27.3 12.9 3.6e-05 23.5 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675335|ref|YP_003727085.1| - 3.3e-05 23.6 12.5 3.3e-05 23.6 8.7 3.3 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675335|ref|YP_003727085.1| - 6.6e-05 23.1 12.1 0.00025 21.3 3.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675335|ref|YP_003727085.1| - 0.00013 22.5 19.6 0.027 15.2 0.7 3.0 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|298675335|ref|YP_003727085.1| - 0.00026 21.3 24.2 0.0066 16.9 0.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298675335|ref|YP_003727085.1| - 0.00059 19.9 3.0 0.00059 19.9 2.0 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|298675335|ref|YP_003727085.1| - 0.00068 19.4 12.8 0.37 10.7 8.9 3.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298675335|ref|YP_003727085.1| - 0.0012 19.2 15.6 0.1 13.0 6.2 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298675335|ref|YP_003727085.1| - 0.0012 19.1 8.7 0.0012 19.1 6.1 3.0 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|298675335|ref|YP_003727085.1| - 0.0025 18.3 12.9 0.0074 16.8 6.2 3.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain YhfH PF14149.1 gi|298675335|ref|YP_003727085.1| - 0.0043 16.7 1.1 0.0043 16.7 0.7 2.6 2 0 0 2 2 2 1 YhfH-like protein Med27 PF11571.3 gi|298675335|ref|YP_003727085.1| - 0.18 11.9 1.5 2.6 8.2 0.1 2.3 2 0 0 2 2 2 0 Mediator complex subunit 27 FYVE PF01363.16 gi|298675335|ref|YP_003727085.1| - 2.9 7.8 13.4 2.9 7.8 2.4 2.9 1 1 1 2 2 2 0 FYVE zinc finger FeThRed_B PF02943.10 gi|298675336|ref|YP_003727086.1| - 4.1e-24 84.3 1.5 4.6e-24 84.2 1.0 1.1 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Usp PF00582.21 gi|298675337|ref|YP_003727087.1| - 8.5e-36 123.2 0.1 9.8e-36 123.0 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Dodecin PF07311.7 gi|298675337|ref|YP_003727087.1| - 0.002 18.1 0.0 0.0055 16.7 0.0 1.7 1 0 0 1 1 1 1 Dodecin AP_endonuc_2 PF01261.19 gi|298675337|ref|YP_003727087.1| - 0.037 13.3 0.1 0.42 9.8 0.0 1.9 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel PGM_PMM_I PF02878.11 gi|298675337|ref|YP_003727087.1| - 0.11 11.9 0.3 0.87 9.0 0.0 2.2 2 1 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AA_permease_2 PF13520.1 gi|298675338|ref|YP_003727088.1| - 1.3e-60 205.1 46.0 1.6e-60 204.8 31.9 1.0 1 0 0 1 1 1 1 Amino acid permease Dimeth_Pyl PF09505.5 gi|298675339|ref|YP_003727089.1| - 1.3e-254 844.7 5.7 1.4e-254 844.5 3.9 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|298675339|ref|YP_003727089.1| - 0.037 14.0 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Scorpion antimicrobial peptide B12-binding PF02310.14 gi|298675340|ref|YP_003727090.1| - 6.2e-26 90.6 0.7 1.1e-25 89.8 0.5 1.4 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|298675340|ref|YP_003727090.1| - 3.1e-20 72.0 0.4 5.9e-20 71.0 0.3 1.5 1 0 0 1 1 1 1 B12 binding domain FlpD PF02662.11 gi|298675341|ref|YP_003727091.1| - 4.8e-57 191.0 3.0 5.4e-52 174.6 0.2 4.3 4 0 0 4 4 4 2 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.9 gi|298675341|ref|YP_003727091.1| - 1.1e-17 64.5 5.2 8.3e-13 48.6 1.4 3.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|298675341|ref|YP_003727091.1| - 1.7e-15 55.8 53.6 1.2e-06 27.8 3.1 6.2 6 1 0 6 6 5 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675341|ref|YP_003727091.1| - 1.8e-14 53.8 39.8 2.3e-07 31.0 8.8 6.0 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675341|ref|YP_003727091.1| - 8.5e-13 47.4 44.9 9.8e-05 22.0 2.3 6.0 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675341|ref|YP_003727091.1| - 1.9e-12 46.8 38.9 3.4e-08 33.1 5.7 5.0 3 1 2 5 5 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675341|ref|YP_003727091.1| - 1.1e-11 45.2 26.8 0.0021 18.7 3.6 5.7 5 1 0 5 5 5 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|298675341|ref|YP_003727091.1| - 9.3e-11 41.4 50.6 5.1e-06 26.2 7.4 6.8 6 2 1 7 7 7 4 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675341|ref|YP_003727091.1| - 5.3e-09 35.9 36.9 4.3e-06 26.6 7.7 5.0 2 2 4 6 6 6 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675341|ref|YP_003727091.1| - 5.6e-09 35.4 59.5 6.4e-05 22.6 1.4 6.6 7 0 0 7 7 6 4 4Fe-4S binding domain DAO PF01266.19 gi|298675341|ref|YP_003727091.1| - 1e-08 34.5 0.1 1.5e-05 24.0 0.2 2.6 2 0 0 2 2 2 2 FAD dependent oxidoreductase Fer4_9 PF13187.1 gi|298675341|ref|YP_003727091.1| - 1.7e-08 34.5 43.8 2.5e-06 27.6 7.3 4.8 4 1 1 5 5 5 2 4Fe-4S dicluster domain Pyr_redox_3 PF13738.1 gi|298675341|ref|YP_003727091.1| - 2.2e-08 34.3 0.9 0.00029 20.9 0.1 2.3 2 1 2 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|298675341|ref|YP_003727091.1| - 4.3e-08 33.4 2.0 1.2e-05 25.6 0.3 3.1 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|298675341|ref|YP_003727091.1| - 1.8e-07 30.3 0.8 5.1e-07 28.8 0.4 1.8 2 0 0 2 2 2 1 FAD binding domain Fer4_15 PF13459.1 gi|298675341|ref|YP_003727091.1| - 3.4e-07 30.7 22.6 0.017 15.6 0.3 4.9 4 0 0 4 4 4 3 4Fe-4S single cluster domain GIDA PF01134.17 gi|298675341|ref|YP_003727091.1| - 2e-06 26.9 0.8 7.6e-06 25.0 0.1 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|298675341|ref|YP_003727091.1| - 3.1e-06 26.5 0.1 8.2e-06 25.1 0.1 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|298675341|ref|YP_003727091.1| - 3.1e-06 27.0 0.0 7.6e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|298675341|ref|YP_003727091.1| - 2e-05 23.2 0.8 4.9e-05 21.9 0.5 1.7 1 1 1 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|298675341|ref|YP_003727091.1| - 0.00096 18.2 0.2 0.0018 17.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|298675341|ref|YP_003727091.1| - 0.0015 17.6 0.9 0.0025 16.9 0.1 1.7 2 0 0 2 2 1 1 Thi4 family K_oxygenase PF13434.1 gi|298675341|ref|YP_003727091.1| - 0.0022 16.9 0.4 9.8 4.9 0.0 3.3 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|298675341|ref|YP_003727091.1| - 0.0027 17.9 0.8 0.016 15.4 0.0 2.7 3 1 0 3 3 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|298675341|ref|YP_003727091.1| - 0.004 16.7 0.0 0.012 15.2 0.0 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glyco_tran_WecB PF03808.8 gi|298675341|ref|YP_003727091.1| - 0.0044 16.4 0.1 0.013 14.9 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase WecB/TagA/CpsF family Fer4_13 PF13370.1 gi|298675341|ref|YP_003727091.1| - 0.0049 17.2 29.4 0.097 13.0 0.9 4.6 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|298675341|ref|YP_003727091.1| - 0.0065 16.7 47.5 0.027 14.7 2.3 6.0 6 0 0 6 6 4 3 4Fe-4S binding domain NAD_binding_9 PF13454.1 gi|298675341|ref|YP_003727091.1| - 0.026 14.2 0.1 11 5.7 0.0 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4_3 PF12798.2 gi|298675341|ref|YP_003727091.1| - 0.031 14.8 66.5 0.056 14.0 4.8 7.3 7 0 0 7 7 6 0 4Fe-4S binding domain Lycopene_cycl PF05834.7 gi|298675341|ref|YP_003727091.1| - 0.055 12.3 0.4 0.16 10.8 0.3 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Fer4_18 PF13746.1 gi|298675341|ref|YP_003727091.1| - 0.059 13.8 45.6 0.12 12.8 3.2 5.7 5 1 1 6 6 5 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|298675341|ref|YP_003727091.1| - 0.11 12.1 3.3 0.077 12.6 0.4 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|298675341|ref|YP_003727091.1| - 0.13 10.8 0.5 1.1 7.8 0.2 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_17 PF13534.1 gi|298675341|ref|YP_003727091.1| - 0.67 10.3 47.6 0.14 12.4 1.0 6.0 4 2 4 8 8 7 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675342|ref|YP_003727092.1| - 7.6e-45 148.7 71.0 1.1e-08 34.2 2.4 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675342|ref|YP_003727092.1| - 1.8e-33 114.6 60.5 1.4e-12 47.7 4.1 5.0 4 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675342|ref|YP_003727092.1| - 3.7e-30 102.4 77.5 1.2e-06 28.1 1.0 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675342|ref|YP_003727092.1| - 9e-29 99.0 68.9 2.2e-11 43.3 4.4 6.5 4 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675342|ref|YP_003727092.1| - 5.3e-28 97.0 134.1 8e-08 32.4 7.4 6.1 1 1 7 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675342|ref|YP_003727092.1| - 1.8e-26 91.7 55.8 4.3e-05 23.2 7.1 6.8 6 1 1 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675342|ref|YP_003727092.1| - 4.8e-24 82.7 68.5 1.4e-05 24.7 1.3 8.4 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298675342|ref|YP_003727092.1| - 2.3e-20 72.3 61.9 2.2e-07 30.7 5.3 5.8 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675342|ref|YP_003727092.1| - 3.4e-19 69.3 70.8 1.9e-06 28.5 6.3 7.6 4 3 3 7 7 7 7 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|298675342|ref|YP_003727092.1| - 2.6e-13 50.0 61.1 0.00021 21.5 3.9 7.4 3 1 4 7 7 7 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675342|ref|YP_003727092.1| - 4.1e-13 48.4 77.8 0.0004 20.4 2.2 8.3 8 0 0 8 8 8 7 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298675342|ref|YP_003727092.1| - 6.8e-13 48.9 59.6 0.028 14.9 0.6 8.6 6 1 2 8 8 8 6 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298675342|ref|YP_003727092.1| - 1.3e-10 40.9 90.0 0.0031 17.9 3.7 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675342|ref|YP_003727092.1| - 5.4e-10 39.5 59.1 0.0013 19.0 0.4 8.9 9 0 0 9 9 9 6 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298675342|ref|YP_003727092.1| - 8.6e-09 35.6 67.6 0.22 11.9 2.2 8.7 7 1 1 8 8 8 7 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|298675342|ref|YP_003727092.1| - 0.00016 21.5 42.9 0.001 18.8 10.2 4.7 3 2 1 4 4 4 3 4Fe-4S dicluster domain Pox_A22 PF04848.8 gi|298675342|ref|YP_003727092.1| - 0.0043 16.9 0.1 0.0072 16.2 0.1 1.3 1 0 0 1 1 1 1 Poxvirus A22 protein Ribosomal_L21p PF00829.16 gi|298675342|ref|YP_003727092.1| - 0.1 12.7 0.9 0.19 11.8 0.6 1.4 1 0 0 1 1 1 0 Ribosomal prokaryotic L21 protein GatB_N PF02934.10 gi|298675343|ref|YP_003727093.1| - 3.6e-79 265.6 0.1 1.6e-78 263.4 0.1 1.8 2 0 0 2 2 2 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|298675343|ref|YP_003727093.1| - 2.2e-24 85.8 2.0 1.1e-23 83.6 0.2 2.5 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|298675343|ref|YP_003727093.1| - 3.5e-17 62.3 0.0 1.6e-16 60.2 0.0 2.1 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|298675343|ref|YP_003727093.1| - 8e-06 25.7 1.3 1.3e-05 25.0 0.1 2.0 2 0 0 2 2 2 1 Yqey-like protein CPSase_sm_chain PF00988.17 gi|298675344|ref|YP_003727094.1| - 6.8e-49 164.7 0.2 1.1e-48 163.9 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|298675344|ref|YP_003727094.1| - 6.1e-40 136.7 0.0 1.1e-39 135.8 0.0 1.4 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|298675344|ref|YP_003727094.1| - 4.8e-07 29.4 0.3 6.7e-05 22.4 0.2 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|298675345|ref|YP_003727095.1| - 2.7e-108 360.0 0.2 3.5e-70 235.5 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|298675345|ref|YP_003727095.1| - 1.4e-46 157.1 0.0 1.6e-22 79.6 0.0 3.4 4 0 0 4 4 4 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|298675345|ref|YP_003727095.1| - 7.5e-40 135.5 0.2 1.9e-39 134.2 0.1 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|298675345|ref|YP_003727095.1| - 3.3e-39 134.5 0.0 7e-20 71.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298675345|ref|YP_003727095.1| - 1.8e-26 92.6 0.0 1.3e-14 53.7 0.0 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|298675345|ref|YP_003727095.1| - 7.4e-23 80.2 0.5 5.3e-21 74.3 0.0 3.9 4 0 0 4 4 4 1 MGS-like domain Dala_Dala_lig_C PF07478.8 gi|298675345|ref|YP_003727095.1| - 2.5e-17 62.9 0.1 2.1e-08 33.8 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|298675345|ref|YP_003727095.1| - 4e-16 58.8 0.0 1.1e-07 31.4 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|298675345|ref|YP_003727095.1| - 1.3e-15 57.6 0.9 1.5e-07 31.4 0.0 2.9 3 0 0 3 3 3 2 ATP-grasp domain GARS_A PF01071.14 gi|298675345|ref|YP_003727095.1| - 1.3e-08 34.6 0.0 0.0014 18.2 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|298675345|ref|YP_003727095.1| - 0.0087 15.2 0.0 0.12 11.6 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain Epimerase PF01370.16 gi|298675345|ref|YP_003727095.1| - 0.097 12.0 0.0 0.37 10.1 0.0 1.9 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Arginosuc_synth PF00764.14 gi|298675346|ref|YP_003727096.1| - 8.8e-176 584.6 0.1 1e-175 584.4 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|298675346|ref|YP_003727096.1| - 9.4e-05 21.4 0.0 0.00028 19.8 0.0 1.7 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|298675346|ref|YP_003727096.1| - 0.00022 20.8 0.0 0.00032 20.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|298675346|ref|YP_003727096.1| - 0.00047 19.5 0.0 0.0018 17.5 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|298675346|ref|YP_003727096.1| - 0.0037 15.8 0.0 0.0063 15.1 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase CTP_transf_1 PF01148.15 gi|298675347|ref|YP_003727097.1| - 2.6e-10 40.3 24.9 2.2e-07 30.7 7.2 2.5 1 1 1 2 2 2 2 Cytidylyltransferase family DUF4257 PF14074.1 gi|298675347|ref|YP_003727097.1| - 0.0078 15.8 1.7 0.029 14.0 0.6 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4257) DUF2061 PF09834.4 gi|298675347|ref|YP_003727097.1| - 0.058 13.5 3.6 0.058 13.5 2.5 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) Claudin_3 PF06653.6 gi|298675347|ref|YP_003727097.1| - 9.4 5.9 14.1 41 3.8 6.9 3.1 1 1 0 1 1 1 0 Tight junction protein, Claudin-like E1-E2_ATPase PF00122.15 gi|298675348|ref|YP_003727098.1| - 4.9e-71 238.4 3.5 4.9e-71 238.4 2.4 3.2 4 0 0 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|298675348|ref|YP_003727098.1| - 1.3e-37 129.1 10.0 1.3e-37 129.1 6.9 2.7 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|298675348|ref|YP_003727098.1| - 5.5e-37 128.2 4.6 2.6e-36 126.0 2.3 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|298675348|ref|YP_003727098.1| - 2.6e-20 71.6 0.2 4.9e-19 67.5 0.0 2.8 3 0 0 3 3 3 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|298675348|ref|YP_003727098.1| - 1.7e-17 64.2 0.1 5.1e-17 62.6 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|298675348|ref|YP_003727098.1| - 2e-13 50.1 0.0 4.6e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|298675348|ref|YP_003727098.1| - 3.4e-08 33.3 5.5 0.0016 18.0 0.3 3.3 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|298675348|ref|YP_003727098.1| - 0.077 13.2 0.0 2.2 8.4 0.0 2.5 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Fer2_3 PF13085.1 gi|298675349|ref|YP_003727099.1| - 7.1e-30 103.0 0.2 2.1e-29 101.5 0.0 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|298675349|ref|YP_003727099.1| - 2.8e-08 33.6 1.2 2.8e-08 33.6 0.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer2 PF00111.22 gi|298675349|ref|YP_003727099.1| - 1.4e-05 24.7 1.1 0.00014 21.4 0.1 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_10 PF13237.1 gi|298675349|ref|YP_003727099.1| - 1.5e-05 24.7 1.5 1.5e-05 24.7 1.0 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675349|ref|YP_003727099.1| - 0.00015 22.0 0.9 0.00015 22.0 0.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298675349|ref|YP_003727099.1| - 0.00031 21.0 0.1 0.00031 21.0 0.1 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675349|ref|YP_003727099.1| - 0.00053 20.2 10.5 0.0013 18.9 3.6 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675349|ref|YP_003727099.1| - 0.00053 20.3 2.9 0.00053 20.3 2.0 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Peptidase_C74 PF12387.3 gi|298675349|ref|YP_003727099.1| - 0.0097 15.0 0.0 0.02 14.0 0.0 1.5 1 0 0 1 1 1 1 Pestivirus NS2 peptidase Fer4_4 PF12800.2 gi|298675349|ref|YP_003727099.1| - 0.096 13.0 17.9 0.11 12.9 0.9 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298675349|ref|YP_003727099.1| - 0.18 12.3 7.5 1.6 9.3 0.1 3.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|298675349|ref|YP_003727099.1| - 0.98 9.3 9.6 0.27 11.1 0.4 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675349|ref|YP_003727099.1| - 2 9.2 12.5 1.9 9.3 1.2 3.0 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|298675349|ref|YP_003727099.1| - 2.5 7.8 18.9 0.19 11.3 2.5 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|298675350|ref|YP_003727100.1| - 1e-114 383.6 0.1 1.3e-114 383.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|298675350|ref|YP_003727100.1| - 3.8e-43 146.4 0.5 7.2e-43 145.5 0.4 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|298675350|ref|YP_003727100.1| - 2.5e-08 34.0 2.0 2.4e-05 24.3 0.4 3.7 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|298675350|ref|YP_003727100.1| - 3e-08 32.9 2.0 7.3e-07 28.4 1.4 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|298675350|ref|YP_003727100.1| - 2.1e-06 26.4 0.3 0.00013 20.6 0.3 2.8 3 0 0 3 3 3 1 HI0933-like protein FAD_oxidored PF12831.2 gi|298675350|ref|YP_003727100.1| - 4e-06 26.1 1.5 3.4e-05 23.0 1.1 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|298675350|ref|YP_003727100.1| - 8.9e-06 24.8 4.6 4.2e-05 22.5 2.0 2.6 2 1 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|298675350|ref|YP_003727100.1| - 8.1e-05 22.9 0.2 0.0024 18.2 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|298675350|ref|YP_003727100.1| - 0.00061 19.7 0.1 0.0023 17.9 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|298675350|ref|YP_003727100.1| - 0.00092 18.3 2.2 0.024 13.7 0.2 3.3 4 0 0 4 4 4 1 Thi4 family FAD_binding_3 PF01494.14 gi|298675350|ref|YP_003727100.1| - 0.0034 16.4 0.3 0.0055 15.7 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|298675350|ref|YP_003727100.1| - 0.047 12.5 0.2 0.072 11.9 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|298675350|ref|YP_003727100.1| - 0.096 12.9 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding DUF374 PF04028.8 gi|298675350|ref|YP_003727100.1| - 0.11 11.7 0.0 3.2 7.0 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF374) AlaDh_PNT_C PF01262.16 gi|298675350|ref|YP_003727100.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lyase_1 PF00206.15 gi|298675351|ref|YP_003727101.1| - 1.3e-100 336.6 0.0 1.7e-100 336.2 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|298675351|ref|YP_003727101.1| - 4.8e-19 68.1 0.8 4.8e-19 68.1 0.5 2.0 2 0 0 2 2 2 1 Fumarase C C-terminus Cupin_2 PF07883.6 gi|298675352|ref|YP_003727102.1| - 9.7e-07 28.2 0.0 1.3e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|298675352|ref|YP_003727102.1| - 0.0043 16.6 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF1637 PF07847.7 gi|298675352|ref|YP_003727102.1| - 0.062 12.6 0.0 0.062 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) OrfB_Zn_ribbon PF07282.6 gi|298675353|ref|YP_003727103.1| - 7.5e-24 83.1 0.1 3e-23 81.2 0.0 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675353|ref|YP_003727103.1| - 5.4e-07 29.2 8.8 7.4e-07 28.7 6.1 1.2 1 0 0 1 1 1 1 Probable transposase HypA PF01155.14 gi|298675353|ref|YP_003727103.1| - 0.003 17.2 0.3 0.73 9.5 0.0 2.9 2 1 0 2 2 2 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|298675353|ref|YP_003727103.1| - 0.034 13.9 0.1 0.088 12.6 0.1 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|298675353|ref|YP_003727103.1| - 0.084 12.5 2.3 0.18 11.5 1.6 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|298675353|ref|YP_003727103.1| - 0.19 10.9 0.2 0.19 10.9 0.1 2.0 3 0 0 3 3 3 0 zinc-ribbon domain IFT20 PF14931.1 gi|298675353|ref|YP_003727103.1| - 2.8 7.8 7.4 0.53 10.2 1.0 2.1 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 PAS_3 PF08447.6 gi|298675354|ref|YP_003727104.1| - 1.4e-39 134.1 2.0 1.3e-18 66.8 0.0 3.7 3 0 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|298675354|ref|YP_003727104.1| - 1.3e-29 101.8 4.0 3.7e-29 100.4 2.8 1.9 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|298675354|ref|YP_003727104.1| - 1.7e-27 95.7 0.1 2.2e-13 50.5 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|298675354|ref|YP_003727104.1| - 5.9e-20 71.1 0.0 1.3e-10 41.0 0.0 5.0 5 0 0 5 5 5 3 PAS fold PAS_4 PF08448.5 gi|298675354|ref|YP_003727104.1| - 3e-18 65.8 0.0 4.5e-09 36.3 0.0 4.5 5 0 0 5 5 5 3 PAS fold PAS_11 PF14598.1 gi|298675354|ref|YP_003727104.1| - 3.8e-16 59.0 0.1 2.6e-08 33.7 0.0 3.4 3 1 0 3 3 3 2 PAS domain PAS_8 PF13188.1 gi|298675354|ref|YP_003727104.1| - 1.3e-09 37.5 0.0 0.0064 16.3 0.0 4.4 4 0 0 4 4 4 2 PAS domain HATPase_c PF02518.21 gi|298675354|ref|YP_003727104.1| - 3.5e-09 36.3 0.0 7.7e-09 35.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|298675354|ref|YP_003727104.1| - 2.9e-06 27.6 0.2 5.7e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_3 PF13589.1 gi|298675354|ref|YP_003727104.1| - 0.00093 18.8 0.0 0.0027 17.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|298675354|ref|YP_003727104.1| - 0.0073 16.1 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DnaB PF00772.16 gi|298675354|ref|YP_003727104.1| - 0.027 14.3 0.6 0.5 10.2 0.1 2.7 2 0 0 2 2 2 0 DnaB-like helicase N terminal domain PAPS_reduct PF01507.14 gi|298675355|ref|YP_003727105.1| - 3.2e-52 176.8 0.0 4.1e-52 176.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PTH2 PF01981.11 gi|298675356|ref|YP_003727106.1| - 1.4e-06 27.9 0.0 2.1e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 OrfB_IS605 PF01385.14 gi|298675357|ref|YP_003727107.1| - 5.1e-49 166.7 4.4 8.2e-49 166.0 3.1 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675357|ref|YP_003727107.1| - 8.2e-08 31.7 0.0 2.5e-07 30.2 0.0 1.9 1 1 0 1 1 1 1 Putative transposase DNA-binding domain DUF986 PF06173.7 gi|298675357|ref|YP_003727107.1| - 0.19 11.5 3.0 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF986) Aconitase PF00330.15 gi|298675358|ref|YP_003727108.1| - 1.6e-144 481.9 0.0 8.4e-104 347.6 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|298675358|ref|YP_003727108.1| - 2.8e-43 147.1 0.1 1.7e-42 144.5 0.0 2.3 2 0 0 2 2 2 1 Aconitase C-terminal domain LTD PF00932.14 gi|298675359|ref|YP_003727109.1| - 1.6e-20 73.3 5.3 2.5e-20 72.7 3.7 1.2 1 0 0 1 1 1 1 Lamin Tail Domain DUF1628 PF07790.6 gi|298675359|ref|YP_003727109.1| - 1.2e-05 25.9 7.2 0.00032 21.3 5.0 2.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) Peptidase_M20 PF01546.23 gi|298675360|ref|YP_003727110.1| - 1.1e-26 93.5 0.0 1.3e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|298675360|ref|YP_003727110.1| - 2.4e-07 30.4 0.0 6.1e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Cohesin PF00963.13 gi|298675360|ref|YP_003727110.1| - 0.06 13.2 0.0 0.31 10.8 0.0 2.1 2 1 1 3 3 3 0 Cohesin domain Peptidase_M28 PF04389.12 gi|298675360|ref|YP_003727110.1| - 0.064 12.9 0.0 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Peptidase family M28 Acetyltransf_1 PF00583.19 gi|298675361|ref|YP_003727111.1| - 2.4e-13 49.9 0.1 3.7e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|298675361|ref|YP_003727111.1| - 7.3e-12 45.2 0.2 1.2e-11 44.5 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|298675361|ref|YP_003727111.1| - 4.5e-08 33.2 0.0 5.3e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|298675361|ref|YP_003727111.1| - 2.4e-06 27.4 0.0 3.4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|298675361|ref|YP_003727111.1| - 3.9e-06 26.5 0.1 5.3e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|298675361|ref|YP_003727111.1| - 1.9e-05 24.6 0.3 2.4e-05 24.3 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|298675361|ref|YP_003727111.1| - 2.4e-05 24.5 0.0 2.7e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|298675361|ref|YP_003727111.1| - 0.00026 20.8 0.0 0.00041 20.1 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|298675361|ref|YP_003727111.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Thioredoxin_3 PF13192.1 gi|298675361|ref|YP_003727111.1| - 0.054 13.3 0.1 0.12 12.1 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin domain Glyco_hydro_15 PF00723.16 gi|298675362|ref|YP_003727112.1| - 1.9e-10 39.8 4.6 8.4e-07 27.8 2.8 3.1 1 1 0 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|298675362|ref|YP_003727112.1| - 9.6e-07 27.8 0.9 1.5e-06 27.1 0.2 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|298675362|ref|YP_003727112.1| - 0.0067 14.6 0.0 0.01 14.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Acetyltransf_1 PF00583.19 gi|298675363|ref|YP_003727113.1| - 1.3e-11 44.3 0.0 1.9e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|298675363|ref|YP_003727113.1| - 2.6e-11 43.5 0.0 3.8e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|298675363|ref|YP_003727113.1| - 4.1e-05 23.6 0.0 5.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|298675363|ref|YP_003727113.1| - 7.9e-05 22.6 0.0 0.00019 21.4 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|298675363|ref|YP_003727113.1| - 0.00012 21.9 0.0 0.00025 20.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|298675363|ref|YP_003727113.1| - 0.00061 19.9 0.0 0.0011 19.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Mec-17 PF05301.6 gi|298675363|ref|YP_003727113.1| - 0.0068 16.3 0.0 0.11 12.4 0.0 2.1 1 1 1 2 2 2 1 Touch receptor neuron protein Mec-17 Acetyltransf_CG PF14542.1 gi|298675363|ref|YP_003727113.1| - 0.051 13.4 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3244 PF11589.3 gi|298675364|ref|YP_003727114.1| - 0.0066 16.1 1.7 0.017 14.8 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF3244) Myco_19_kDa PF05481.7 gi|298675364|ref|YP_003727114.1| - 0.017 14.9 0.3 0.53 10.1 0.0 2.3 1 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Methyltransf_11 PF08241.7 gi|298675365|ref|YP_003727115.1| - 8.6e-13 48.5 0.0 1.4e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298675365|ref|YP_003727115.1| - 3.2e-12 46.6 0.0 5.6e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675365|ref|YP_003727115.1| - 2e-11 44.4 0.0 3.4e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298675365|ref|YP_003727115.1| - 4e-10 39.4 0.1 6e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298675365|ref|YP_003727115.1| - 2.7e-08 33.2 0.0 6.5e-08 31.9 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|298675365|ref|YP_003727115.1| - 3.4e-08 33.3 0.0 6.8e-08 32.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|298675365|ref|YP_003727115.1| - 3.9e-08 32.6 0.1 1.3e-07 30.9 0.0 1.8 1 1 1 2 2 2 1 Tellurite resistance protein TehB Methyltransf_8 PF05148.10 gi|298675365|ref|YP_003727115.1| - 1.6e-05 24.6 0.0 0.00043 19.9 0.0 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.7 gi|298675365|ref|YP_003727115.1| - 2e-05 24.9 0.0 4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298675365|ref|YP_003727115.1| - 0.00021 21.3 0.0 0.0003 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|298675365|ref|YP_003727115.1| - 0.0025 17.1 0.0 0.0041 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|298675365|ref|YP_003727115.1| - 0.0094 15.5 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF938 PF06080.7 gi|298675365|ref|YP_003727115.1| - 0.031 13.8 0.0 0.039 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Eno-Rase_FAD_bd PF07055.7 gi|298675365|ref|YP_003727115.1| - 0.19 11.6 1.4 0.35 10.8 0.0 2.2 3 0 0 3 3 3 0 Enoyl reductase FAD binding domain MtmB PF05369.7 gi|298675366|ref|YP_003727116.1| - 7.6e-88 294.6 0.1 9e-88 294.4 0.1 1.0 1 0 0 1 1 1 1 Monomethylamine methyltransferase MtmB Peripla_BP_2 PF01497.13 gi|298675367|ref|YP_003727117.1| - 4.3e-26 91.5 0.1 6.8e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|298675368|ref|YP_003727118.1| - 9.7e-93 310.3 29.3 1.2e-92 310.1 20.3 1.0 1 0 0 1 1 1 1 FecCD transport family DUF4181 PF13789.1 gi|298675368|ref|YP_003727118.1| - 4.7 7.1 18.0 0.32 10.9 0.6 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4181) ABC_tran PF00005.22 gi|298675369|ref|YP_003727119.1| - 2.3e-30 105.6 0.0 3.4e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675369|ref|YP_003727119.1| - 1.7e-10 41.3 2.1 3.1e-08 33.9 1.5 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|298675369|ref|YP_003727119.1| - 1.1e-05 24.7 0.4 8.9e-05 21.8 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|298675369|ref|YP_003727119.1| - 1.3e-05 25.3 0.5 0.00016 21.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|298675369|ref|YP_003727119.1| - 3.8e-05 24.0 0.6 7.5e-05 23.1 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|298675369|ref|YP_003727119.1| - 0.0001 22.1 0.2 0.0045 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|298675369|ref|YP_003727119.1| - 0.00012 21.2 3.6 0.098 11.6 1.7 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|298675369|ref|YP_003727119.1| - 0.00046 19.6 0.0 0.002 17.5 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|298675369|ref|YP_003727119.1| - 0.00063 18.9 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|298675369|ref|YP_003727119.1| - 0.00066 18.9 0.0 0.0014 17.8 0.0 1.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|298675369|ref|YP_003727119.1| - 0.0014 17.1 0.0 0.37 9.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|298675369|ref|YP_003727119.1| - 0.0016 18.1 0.7 1.1 8.9 0.0 2.8 2 1 0 2 2 2 1 NTPase ABC_ATPase PF09818.4 gi|298675369|ref|YP_003727119.1| - 0.002 16.8 0.1 0.22 10.0 0.0 2.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA PF00004.24 gi|298675369|ref|YP_003727119.1| - 0.0023 18.1 0.1 0.021 14.9 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|298675369|ref|YP_003727119.1| - 0.0023 17.9 0.1 0.0057 16.6 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|298675369|ref|YP_003727119.1| - 0.0035 16.2 0.0 0.0087 14.9 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|298675369|ref|YP_003727119.1| - 0.004 16.8 0.1 0.0058 16.3 0.1 1.4 1 1 0 1 1 1 1 Archaeal ATPase IF2_N PF04760.10 gi|298675369|ref|YP_003727119.1| - 0.023 14.3 0.0 0.3 10.7 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region MobB PF03205.9 gi|298675369|ref|YP_003727119.1| - 0.027 14.1 0.1 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|298675369|ref|YP_003727119.1| - 0.029 14.2 0.0 0.5 10.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|298675369|ref|YP_003727119.1| - 0.03 13.9 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|298675369|ref|YP_003727119.1| - 0.033 13.9 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|298675369|ref|YP_003727119.1| - 0.061 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|298675369|ref|YP_003727119.1| - 0.066 12.0 0.5 0.18 10.6 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain UPF0079 PF02367.12 gi|298675369|ref|YP_003727119.1| - 0.083 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Clathrin-link PF09268.5 gi|298675369|ref|YP_003727119.1| - 0.09 11.8 0.3 0.78 8.8 0.0 2.3 2 0 0 2 2 2 0 Clathrin, heavy-chain linker Fe_dep_repress PF01325.14 gi|298675370|ref|YP_003727120.1| - 2.6e-17 62.5 0.4 4.6e-17 61.7 0.3 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|298675370|ref|YP_003727120.1| - 6.5e-16 57.7 0.0 1.6e-15 56.5 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain LexA_DNA_bind PF01726.11 gi|298675370|ref|YP_003727120.1| - 0.00032 20.1 0.0 0.00056 19.4 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain FeoC PF09012.5 gi|298675370|ref|YP_003727120.1| - 0.00057 19.5 0.0 0.00097 18.7 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|298675370|ref|YP_003727120.1| - 0.0026 17.8 0.0 0.0042 17.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|298675370|ref|YP_003727120.1| - 0.0033 16.7 0.0 0.0053 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|298675370|ref|YP_003727120.1| - 0.0047 16.6 0.0 0.0079 15.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|298675370|ref|YP_003727120.1| - 0.0062 16.1 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|298675370|ref|YP_003727120.1| - 0.0065 16.1 0.1 0.0099 15.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|298675370|ref|YP_003727120.1| - 0.0085 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.5 gi|298675370|ref|YP_003727120.1| - 0.014 14.9 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|298675370|ref|YP_003727120.1| - 0.073 12.9 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|298675370|ref|YP_003727120.1| - 0.11 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2670 PF10875.3 gi|298675370|ref|YP_003727120.1| - 0.12 12.4 0.3 0.25 11.3 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2670) MarR PF01047.17 gi|298675370|ref|YP_003727120.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family CCG PF02754.11 gi|298675371|ref|YP_003727121.1| - 1.5e-33 114.6 0.3 6.8e-19 67.6 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Prok-RING_4 PF14447.1 gi|298675371|ref|YP_003727121.1| - 0.046 13.2 1.1 0.067 12.7 0.0 1.8 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 Fer4_8 PF13183.1 gi|298675372|ref|YP_003727122.1| - 6.2e-13 48.5 7.9 1e-12 47.8 5.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675372|ref|YP_003727122.1| - 1.1e-09 38.5 9.6 1.7e-09 37.8 6.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675372|ref|YP_003727122.1| - 1.9e-08 34.4 8.2 3.6e-08 33.5 5.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675372|ref|YP_003727122.1| - 1.3e-07 31.2 7.8 2.4e-07 30.4 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675372|ref|YP_003727122.1| - 8.8e-07 29.2 10.5 3.2e-05 24.2 8.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675372|ref|YP_003727122.1| - 3.1e-05 23.6 10.5 0.028 14.3 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298675372|ref|YP_003727122.1| - 8e-05 22.4 6.7 0.00015 21.5 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675372|ref|YP_003727122.1| - 0.00023 20.6 13.6 0.015 14.8 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675372|ref|YP_003727122.1| - 0.00029 21.2 13.1 0.00081 19.7 1.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|298675372|ref|YP_003727122.1| - 0.00073 19.1 3.3 0.43 10.2 0.2 2.2 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|298675372|ref|YP_003727122.1| - 0.0035 17.8 1.4 0.52 10.9 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|298675372|ref|YP_003727122.1| - 0.016 15.9 12.4 0.35 11.6 8.9 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|298675372|ref|YP_003727122.1| - 0.018 15.3 5.5 1.2 9.5 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|298675372|ref|YP_003727122.1| - 0.026 14.8 10.9 0.24 11.8 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298675372|ref|YP_003727122.1| - 0.32 11.6 16.4 0.18 12.4 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298675372|ref|YP_003727122.1| - 4.6 7.2 11.7 1.2 9.0 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain F420_oxidored PF03807.12 gi|298675373|ref|YP_003727123.1| - 1.7e-19 70.0 0.1 3e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.12 gi|298675373|ref|YP_003727123.1| - 0.05 12.4 0.1 0.083 11.7 0.1 1.4 1 1 0 1 1 1 0 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|298675373|ref|YP_003727123.1| - 0.084 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RRXRR PF14239.1 gi|298675374|ref|YP_003727124.1| - 3.1e-54 183.0 3.7 4.5e-54 182.5 2.6 1.2 1 0 0 1 1 1 1 RRXRR protein HNH PF01844.18 gi|298675374|ref|YP_003727124.1| - 3e-11 43.0 8.6 7.4e-11 41.7 6.0 1.7 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|298675374|ref|YP_003727124.1| - 8.5e-06 25.4 0.1 1.7e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.1 gi|298675374|ref|YP_003727124.1| - 0.5 10.4 5.7 1.1 9.3 3.9 1.6 1 0 0 1 1 1 0 HNH endonuclease PHD PF00628.24 gi|298675374|ref|YP_003727124.1| - 0.74 9.5 5.1 5.5 6.7 0.0 2.7 3 0 0 3 3 3 0 PHD-finger zf-C4pol PF14260.1 gi|298675374|ref|YP_003727124.1| - 1.5 8.8 7.4 0.19 11.7 0.6 2.7 3 0 0 3 3 3 0 C4-type zinc-finger of DNA polymerase delta GXGXG PF01493.14 gi|298675375|ref|YP_003727125.1| - 3.4e-37 127.4 10.9 4.1e-37 127.1 7.5 1.0 1 0 0 1 1 1 1 GXGXG motif Glu_synthase PF01645.12 gi|298675376|ref|YP_003727126.1| - 6.9e-137 456.2 0.0 9.9e-137 455.7 0.0 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|298675376|ref|YP_003727126.1| - 2.9e-10 39.8 0.1 4.5e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Glutamate synthase central domain Fer4 PF00037.22 gi|298675376|ref|YP_003727126.1| - 7.9e-08 31.5 22.1 1e-05 24.9 2.9 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain IMPDH PF00478.20 gi|298675376|ref|YP_003727126.1| - 9.2e-08 31.3 0.5 0.00039 19.4 0.7 2.7 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Fer4_16 PF13484.1 gi|298675376|ref|YP_003727126.1| - 1.3e-07 32.2 11.5 0.00013 22.6 0.4 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|298675376|ref|YP_003727126.1| - 1.7e-07 31.5 16.2 5.4e-07 29.8 7.5 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain FMN_dh PF01070.13 gi|298675376|ref|YP_003727126.1| - 1.7e-07 30.3 8.5 2.6e-07 29.8 1.0 3.1 4 0 0 4 4 4 1 FMN-dependent dehydrogenase Fer4_10 PF13237.1 gi|298675376|ref|YP_003727126.1| - 1.6e-06 27.8 13.2 0.0014 18.3 0.6 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675376|ref|YP_003727126.1| - 1.1e-05 25.6 11.4 1.1e-05 25.6 7.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675376|ref|YP_003727126.1| - 2.6e-05 23.8 14.0 0.00014 21.5 1.0 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298675376|ref|YP_003727126.1| - 2.9e-05 24.0 12.8 9.4e-05 22.3 5.6 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675376|ref|YP_003727126.1| - 7.2e-05 22.5 8.9 7.2e-05 22.5 6.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain NMO PF03060.10 gi|298675376|ref|YP_003727126.1| - 9.4e-05 21.7 3.6 0.00017 20.8 2.5 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_2 PF12797.2 gi|298675376|ref|YP_003727126.1| - 0.0029 17.4 14.2 0.0097 15.7 1.7 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|298675376|ref|YP_003727126.1| - 0.0099 15.7 4.1 0.0099 15.7 2.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain His_biosynth PF00977.16 gi|298675376|ref|YP_003727126.1| - 0.062 12.5 1.1 0.077 12.2 0.0 1.6 2 0 0 2 2 2 0 Histidine biosynthesis protein Fer4_17 PF13534.1 gi|298675376|ref|YP_003727126.1| - 0.23 11.8 19.2 6 7.2 2.7 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298675376|ref|YP_003727126.1| - 5.8 7.4 16.9 0.33 11.4 0.9 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298675376|ref|YP_003727126.1| - 7.4 7.2 14.1 2.6 8.6 0.6 2.9 3 0 0 3 3 2 0 4Fe-4S single cluster domain GATase_2 PF00310.16 gi|298675377|ref|YP_003727127.1| - 4.6e-25 88.0 0.0 6.3e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|298675377|ref|YP_003727127.1| - 2.7e-12 46.7 0.0 7.2e-11 42.1 0.0 2.7 2 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|298675377|ref|YP_003727127.1| - 8.6e-09 35.1 0.0 1.3e-07 31.4 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain UPF0228 PF05727.6 gi|298675381|ref|YP_003727131.1| - 1.7e-26 92.4 8.6 2.4e-26 91.9 6.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) Peptidase_C39 PF03412.10 gi|298675381|ref|YP_003727131.1| - 0.038 13.7 0.2 0.058 13.2 0.2 1.3 1 0 0 1 1 1 0 Peptidase C39 family Arch_flagellin PF01917.11 gi|298675381|ref|YP_003727131.1| - 0.093 12.3 4.6 0.019 14.5 0.7 1.7 1 1 1 2 2 2 0 Archaebacterial flagellin ABC_tran PF00005.22 gi|298675383|ref|YP_003727133.1| - 3.4e-25 88.9 0.0 8.2e-25 87.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675383|ref|YP_003727133.1| - 2.1e-16 60.7 0.0 2.9e-11 43.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|298675383|ref|YP_003727133.1| - 1.2e-05 24.5 0.0 0.0019 17.3 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|298675383|ref|YP_003727133.1| - 0.00057 20.2 0.1 0.00097 19.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|298675383|ref|YP_003727133.1| - 0.0055 16.2 0.2 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|298675383|ref|YP_003727133.1| - 0.0072 15.7 1.4 0.87 8.9 0.4 2.3 1 1 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|298675383|ref|YP_003727133.1| - 0.0086 16.2 0.8 0.15 12.2 0.5 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|298675383|ref|YP_003727133.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.1 gi|298675383|ref|YP_003727133.1| - 0.032 14.1 0.0 0.09 12.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|298675383|ref|YP_003727133.1| - 0.037 13.7 0.1 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|298675383|ref|YP_003727133.1| - 0.037 13.1 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|298675383|ref|YP_003727133.1| - 0.044 13.9 0.3 0.43 10.7 0.2 2.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|298675383|ref|YP_003727133.1| - 0.056 12.8 0.1 0.14 11.5 0.1 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|298675383|ref|YP_003727133.1| - 0.079 12.5 0.2 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|298675383|ref|YP_003727133.1| - 0.097 12.2 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|298675383|ref|YP_003727133.1| - 0.11 12.4 0.0 0.46 10.4 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC2_membrane_2 PF12679.2 gi|298675384|ref|YP_003727134.1| - 2.6e-34 118.3 25.1 3.7e-34 117.8 17.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675384|ref|YP_003727134.1| - 4.5e-05 22.7 42.9 6.3e-05 22.2 27.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|298675384|ref|YP_003727134.1| - 0.00025 20.4 22.2 0.00025 20.4 15.4 2.9 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298675384|ref|YP_003727134.1| - 0.022 13.7 41.6 0.0031 16.6 23.9 2.5 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298675385|ref|YP_003727135.1| - 9.4e-35 119.8 15.6 1.2e-34 119.4 10.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675385|ref|YP_003727135.1| - 9.2e-13 47.8 35.0 3.3e-12 46.0 24.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298675385|ref|YP_003727135.1| - 1.1e-09 37.7 19.5 1.1e-09 37.7 13.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Phtf-FEM1B_bdg PF12129.3 gi|298675385|ref|YP_003727135.1| - 0.44 9.8 8.0 1.1 8.5 5.5 1.7 1 1 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor ABC2_membrane_5 PF13346.1 gi|298675385|ref|YP_003727135.1| - 1 8.6 34.4 1.3 8.2 21.1 2.7 2 1 0 2 2 2 0 ABC-2 family transporter protein PD40 PF07676.7 gi|298675386|ref|YP_003727136.1| - 7.5e-15 54.2 4.9 0.0017 17.9 0.0 5.6 5 0 0 5 5 5 4 WD40-like Beta Propeller Repeat eIF2A PF08662.6 gi|298675386|ref|YP_003727136.1| - 2.1e-08 34.1 0.3 0.0032 17.2 0.0 4.4 2 1 2 4 4 4 1 Eukaryotic translation initiation factor eIF2A DPPIV_N PF00930.16 gi|298675386|ref|YP_003727136.1| - 4.2e-08 32.1 4.4 0.074 11.6 0.0 5.8 4 2 3 7 7 7 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Lipocalin_3 PF12702.2 gi|298675386|ref|YP_003727136.1| - 0.073 13.1 1.2 23 5.1 0.0 4.6 5 1 0 5 5 5 0 Lipocalin-like PEGA PF08308.6 gi|298675386|ref|YP_003727136.1| - 0.08 12.7 1.8 0.17 11.7 0.2 2.3 2 0 0 2 2 2 0 PEGA domain MetRS-N PF09635.5 gi|298675387|ref|YP_003727137.1| - 0.084 13.2 0.4 0.14 12.5 0.2 1.4 1 1 0 1 1 1 0 MetRS-N binding domain DUF585 PF04522.7 gi|298675387|ref|YP_003727137.1| - 0.21 10.9 1.0 0.23 10.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF585) Reprolysin_3 PF13582.1 gi|298675389|ref|YP_003727139.1| - 1e-05 26.0 0.1 1.3e-05 25.6 0.1 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|298675389|ref|YP_003727139.1| - 0.0007 19.5 0.2 0.00086 19.2 0.2 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF1628 PF07790.6 gi|298675390|ref|YP_003727140.1| - 0.062 14.0 0.0 0.27 12.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) Xol-1_GHMP-like PF09109.5 gi|298675390|ref|YP_003727140.1| - 0.079 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Switch protein XOL-1, GHMP-like ABC2_membrane_2 PF12679.2 gi|298675391|ref|YP_003727141.1| - 1.4e-30 106.1 20.7 1.7e-30 105.8 14.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675391|ref|YP_003727141.1| - 4.3e-10 39.1 40.8 9.5e-10 38.0 26.2 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298675391|ref|YP_003727141.1| - 3.3e-07 29.6 23.2 3.3e-07 29.6 16.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|298675391|ref|YP_003727141.1| - 0.00013 21.3 18.8 0.00013 21.3 13.0 2.9 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298675392|ref|YP_003727142.1| - 7.5e-30 103.7 22.5 1.2e-29 103.0 15.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675392|ref|YP_003727142.1| - 2.6e-14 52.9 30.6 2.6e-14 52.9 21.2 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298675392|ref|YP_003727142.1| - 0.00021 20.4 42.0 0.0025 16.9 28.6 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|298675392|ref|YP_003727142.1| - 0.00079 18.7 31.6 0.00079 18.7 21.9 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF3859 PF12975.2 gi|298675392|ref|YP_003727142.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3859) UPF0370 PF13980.1 gi|298675392|ref|YP_003727142.1| - 0.21 11.4 3.4 8 6.3 0.2 2.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0370) DPPIV_N PF00930.16 gi|298675393|ref|YP_003727143.1| - 6.5e-12 44.6 3.5 8.4e-05 21.3 0.0 6.1 3 2 4 7 7 7 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region PEGA PF08308.6 gi|298675393|ref|YP_003727143.1| - 4.7e-06 26.3 1.1 1.1e-05 25.1 0.2 2.1 2 0 0 2 2 2 1 PEGA domain CarboxypepD_reg PF13620.1 gi|298675393|ref|YP_003727143.1| - 0.00082 19.3 1.3 0.021 14.8 0.1 2.6 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain PD40 PF07676.7 gi|298675393|ref|YP_003727143.1| - 0.0032 17.0 10.3 0.91 9.2 0.3 5.7 6 0 0 6 6 6 2 WD40-like Beta Propeller Repeat DUF2606 PF10794.4 gi|298675393|ref|YP_003727143.1| - 0.11 11.9 0.0 0.11 11.9 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2606) Coatomer_WDAD PF04053.9 gi|298675393|ref|YP_003727143.1| - 0.21 10.3 3.4 0.14 10.8 0.2 2.1 2 1 1 3 3 3 0 Coatomer WD associated region HTH_24 PF13412.1 gi|298675394|ref|YP_003727144.1| - 2.1e-18 65.4 1.5 1.8e-08 33.6 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|298675394|ref|YP_003727144.1| - 2.4e-08 33.6 0.0 1.6e-05 24.6 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|298675394|ref|YP_003727144.1| - 1.4e-07 31.0 0.0 0.00016 21.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|298675394|ref|YP_003727144.1| - 1.8e-07 30.7 0.1 0.0022 17.6 0.0 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|298675394|ref|YP_003727144.1| - 1.8e-05 24.3 0.1 0.0031 17.1 0.1 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|298675394|ref|YP_003727144.1| - 8.3e-05 22.1 0.2 0.014 15.0 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_41 PF14502.1 gi|298675394|ref|YP_003727144.1| - 0.00012 21.5 0.0 0.21 11.1 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|298675394|ref|YP_003727144.1| - 0.00067 19.6 0.2 0.065 13.2 0.1 2.3 2 0 0 2 2 2 1 Transposase MarR_2 PF12802.2 gi|298675394|ref|YP_003727144.1| - 0.00076 19.1 0.0 0.27 10.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|298675394|ref|YP_003727144.1| - 0.0012 18.8 0.2 1.7 8.7 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain GerE PF00196.14 gi|298675394|ref|YP_003727144.1| - 0.0023 17.1 0.3 0.28 10.5 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family DNA_Packaging PF11053.3 gi|298675394|ref|YP_003727144.1| - 0.007 15.9 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Terminase DNA packaging enzyme HTH_IclR PF09339.5 gi|298675394|ref|YP_003727144.1| - 0.007 15.9 0.0 0.27 10.8 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Mga PF05043.8 gi|298675394|ref|YP_003727144.1| - 0.0075 16.5 0.4 1.1 9.5 0.0 2.3 1 1 1 2 2 2 1 Mga helix-turn-helix domain FaeA PF04703.7 gi|298675394|ref|YP_003727144.1| - 0.0081 16.3 0.0 0.021 14.9 0.0 1.7 1 0 0 1 1 1 1 FaeA-like protein HTH_27 PF13463.1 gi|298675394|ref|YP_003727144.1| - 0.015 15.6 0.0 2.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_IS630 PF01710.11 gi|298675394|ref|YP_003727144.1| - 0.016 14.9 0.1 0.65 9.6 0.0 2.1 1 1 1 2 2 2 0 Transposase HTH_AsnC-type PF13404.1 gi|298675394|ref|YP_003727144.1| - 0.019 14.4 0.0 0.56 9.7 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|298675394|ref|YP_003727144.1| - 0.038 13.7 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|298675394|ref|YP_003727144.1| - 0.038 13.6 0.0 4.2 7.1 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|298675394|ref|YP_003727144.1| - 0.04 13.7 0.0 5.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_30 PF13556.1 gi|298675394|ref|YP_003727144.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_DeoR PF08220.7 gi|298675394|ref|YP_003727144.1| - 0.078 12.5 0.2 0.77 9.3 0.0 2.2 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|298675394|ref|YP_003727144.1| - 0.091 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_6 PF01418.12 gi|298675394|ref|YP_003727144.1| - 0.091 12.5 0.5 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_10 PF04967.7 gi|298675394|ref|YP_003727144.1| - 0.11 12.1 0.0 0.55 9.8 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain Acetyltransf_1 PF00583.19 gi|298675395|ref|YP_003727145.1| - 7.2e-14 51.5 0.0 1.2e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|298675395|ref|YP_003727145.1| - 1e-09 38.4 0.0 1.6e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|298675395|ref|YP_003727145.1| - 3.5e-09 36.8 0.0 4.3e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|298675395|ref|YP_003727145.1| - 5.6e-09 36.1 0.3 6.7e-09 35.8 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|298675395|ref|YP_003727145.1| - 5.8e-07 29.1 0.0 1.7e-06 27.6 0.0 1.7 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|298675395|ref|YP_003727145.1| - 2.6e-05 24.1 0.0 3.2e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|298675395|ref|YP_003727145.1| - 4.3e-05 23.7 0.0 5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|298675395|ref|YP_003727145.1| - 0.00068 19.4 0.1 0.0037 17.1 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|298675395|ref|YP_003727145.1| - 0.014 15.2 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Gln-synt_C PF00120.19 gi|298675396|ref|YP_003727146.1| - 1e-97 326.3 0.0 1.2e-97 326.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|298675396|ref|YP_003727146.1| - 1.3e-31 107.9 0.1 2.7e-31 106.9 0.1 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF4250 PF14056.1 gi|298675396|ref|YP_003727146.1| - 0.14 11.8 0.0 1.3 8.8 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) DUF4634 PF15465.1 gi|298675397|ref|YP_003727147.1| - 0.029 14.5 0.8 4.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4634) ABC_tran PF00005.22 gi|298675398|ref|YP_003727148.1| - 3.4e-25 88.9 0.0 8.2e-25 87.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675398|ref|YP_003727148.1| - 2.1e-16 60.7 0.0 2.9e-11 43.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|298675398|ref|YP_003727148.1| - 1.3e-05 24.4 0.0 0.0019 17.3 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|298675398|ref|YP_003727148.1| - 0.00064 20.0 0.2 0.0011 19.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|298675398|ref|YP_003727148.1| - 0.0055 16.2 0.2 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|298675398|ref|YP_003727148.1| - 0.0072 15.7 1.4 0.87 8.9 0.4 2.3 1 1 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|298675398|ref|YP_003727148.1| - 0.0086 16.2 0.8 0.15 12.2 0.5 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|298675398|ref|YP_003727148.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.1 gi|298675398|ref|YP_003727148.1| - 0.032 14.1 0.0 0.09 12.6 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|298675398|ref|YP_003727148.1| - 0.037 13.7 0.1 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|298675398|ref|YP_003727148.1| - 0.037 13.1 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|298675398|ref|YP_003727148.1| - 0.046 13.8 0.3 0.45 10.6 0.2 2.3 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|298675398|ref|YP_003727148.1| - 0.056 12.8 0.1 0.14 11.5 0.1 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|298675398|ref|YP_003727148.1| - 0.079 12.5 0.2 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|298675398|ref|YP_003727148.1| - 0.099 12.2 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|298675398|ref|YP_003727148.1| - 0.11 12.4 0.0 0.43 10.5 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase NPCBM_assoc PF10633.4 gi|298675399|ref|YP_003727149.1| - 2.7e-12 46.5 1.3 0.00036 20.5 0.0 4.4 3 1 1 4 4 4 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|298675399|ref|YP_003727149.1| - 4.2e-05 23.5 9.1 0.007 16.4 0.6 3.4 3 0 0 3 3 3 3 CARDB DUF11 PF01345.13 gi|298675399|ref|YP_003727149.1| - 4.6e-05 23.3 7.1 0.22 11.6 0.2 3.4 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF1034 PF06280.7 gi|298675399|ref|YP_003727149.1| - 0.00064 20.1 1.8 1.7 9.0 0.1 3.9 3 3 1 4 4 4 2 Fn3-like domain (DUF1034) Transglut_N PF00868.15 gi|298675399|ref|YP_003727149.1| - 0.0014 18.6 0.5 1.2 9.1 0.0 3.8 3 2 0 3 3 3 1 Transglutaminase family CBM-like PF14683.1 gi|298675399|ref|YP_003727149.1| - 0.016 14.8 0.2 0.49 10.0 0.0 2.9 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain III A2M_N_2 PF07703.9 gi|298675399|ref|YP_003727149.1| - 0.049 13.4 0.1 0.27 11.0 0.0 2.2 2 1 0 2 2 2 0 Alpha-2-macroglobulin family N-terminal region ABC2_membrane_2 PF12679.2 gi|298675400|ref|YP_003727150.1| - 3.7e-33 114.5 26.1 6.1e-33 113.8 18.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675400|ref|YP_003727150.1| - 1.7e-05 24.1 43.7 6.3e-05 22.2 29.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|298675400|ref|YP_003727150.1| - 0.00017 20.9 21.2 0.00017 20.9 14.7 2.9 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298675400|ref|YP_003727150.1| - 0.0018 17.3 34.8 0.0018 17.3 24.1 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298675401|ref|YP_003727151.1| - 1.4e-33 116.0 18.5 1.6e-33 115.7 12.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|298675401|ref|YP_003727151.1| - 3.1e-14 52.7 32.9 3.1e-14 52.7 22.8 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|298675401|ref|YP_003727151.1| - 1.5e-09 37.3 20.8 1.5e-09 37.3 14.4 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|298675401|ref|YP_003727151.1| - 2.9 7.1 39.4 29 3.8 24.0 3.0 2 1 0 2 2 2 0 ABC-2 family transporter protein Abhydrolase_9_N PF15420.1 gi|298675401|ref|YP_003727151.1| - 4.7 6.9 11.8 2.6 7.7 1.4 2.4 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus PD40 PF07676.7 gi|298675402|ref|YP_003727152.1| - 2.1e-13 49.6 8.5 0.0017 17.9 0.0 5.8 5 1 1 6 6 6 4 WD40-like Beta Propeller Repeat eIF2A PF08662.6 gi|298675402|ref|YP_003727152.1| - 7.9e-09 35.5 0.5 0.0071 16.0 0.0 4.6 2 2 2 4 4 4 2 Eukaryotic translation initiation factor eIF2A DPPIV_N PF00930.16 gi|298675402|ref|YP_003727152.1| - 1.1e-07 30.7 5.9 0.069 11.7 0.0 5.9 4 2 2 6 6 6 3 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9_N PF02897.10 gi|298675402|ref|YP_003727152.1| - 0.00013 20.6 4.8 0.018 13.6 0.2 3.4 3 1 1 4 4 4 2 Prolyl oligopeptidase, N-terminal beta-propeller domain PEGA PF08308.6 gi|298675402|ref|YP_003727152.1| - 0.017 14.8 0.2 0.065 13.0 0.1 2.0 1 0 0 1 1 1 0 PEGA domain BiPBP_C PF06832.7 gi|298675402|ref|YP_003727152.1| - 0.027 14.3 0.0 0.078 12.9 0.0 1.8 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family HTH_24 PF13412.1 gi|298675405|ref|YP_003727155.1| - 4.9e-17 61.0 1.4 1.3e-08 34.0 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|298675405|ref|YP_003727155.1| - 4.3e-08 32.8 0.0 6.1e-06 25.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|298675405|ref|YP_003727155.1| - 7e-07 28.8 0.1 0.0074 15.9 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|298675405|ref|YP_003727155.1| - 1.5e-06 27.7 0.0 0.00021 20.8 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|298675405|ref|YP_003727155.1| - 0.00014 21.5 0.1 0.0037 16.9 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|298675405|ref|YP_003727155.1| - 0.0007 19.2 0.0 0.064 12.9 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_41 PF14502.1 gi|298675405|ref|YP_003727155.1| - 0.00084 18.8 0.0 0.25 10.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|298675405|ref|YP_003727155.1| - 0.0009 18.8 0.1 0.015 14.9 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_Tnp_Tc3_2 PF01498.13 gi|298675405|ref|YP_003727155.1| - 0.0067 16.4 0.1 0.28 11.2 0.0 2.4 2 0 0 2 2 2 1 Transposase HTH_34 PF13601.1 gi|298675405|ref|YP_003727155.1| - 0.011 15.6 0.1 4.8 7.2 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain FaeA PF04703.7 gi|298675405|ref|YP_003727155.1| - 0.012 15.7 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein Sigma70_r4_2 PF08281.7 gi|298675405|ref|YP_003727155.1| - 0.026 13.9 0.0 0.049 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|298675405|ref|YP_003727155.1| - 0.026 13.8 0.1 0.13 11.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Mga PF05043.8 gi|298675405|ref|YP_003727155.1| - 0.028 14.6 0.1 3.1 8.1 0.0 2.4 1 1 0 2 2 2 0 Mga helix-turn-helix domain HTH_IclR PF09339.5 gi|298675405|ref|YP_003727155.1| - 0.031 13.8 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain DNA_Packaging PF11053.3 gi|298675405|ref|YP_003727155.1| - 0.036 13.6 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Terminase DNA packaging enzyme HTH_40 PF14493.1 gi|298675405|ref|YP_003727155.1| - 0.041 14.1 2.0 0.21 11.8 0.4 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.1 gi|298675405|ref|YP_003727155.1| - 0.045 13.3 0.0 0.09 12.3 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_23 PF13384.1 gi|298675405|ref|YP_003727155.1| - 0.048 13.3 0.0 0.46 10.2 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Tnp_IS630 PF01710.11 gi|298675405|ref|YP_003727155.1| - 0.056 13.1 0.0 1.2 8.8 0.0 2.1 1 1 0 2 2 2 0 Transposase HTH_28 PF13518.1 gi|298675405|ref|YP_003727155.1| - 0.15 12.1 0.1 0.37 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Spore_GerQ PF09671.5 gi|298675406|ref|YP_003727156.1| - 0.13 11.9 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Spore coat protein (Spore_GerQ) DDE_Tnp_1 PF01609.16 gi|298675407|ref|YP_003727157.1| - 7.6e-15 55.0 0.1 1.8e-14 53.7 0.1 1.6 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|298675407|ref|YP_003727157.1| - 0.0075 15.8 0.2 0.017 14.6 0.2 1.6 1 0 0 1 1 1 1 DDE superfamily endonuclease SWIM PF04434.12 gi|298675407|ref|YP_003727157.1| - 0.01 15.2 1.7 0.023 14.1 1.1 1.6 1 0 0 1 1 1 0 SWIM zinc finger DDE_Tnp_1_2 PF13586.1 gi|298675407|ref|YP_003727157.1| - 0.016 15.3 0.1 0.11 12.6 0.1 2.2 1 1 0 1 1 1 0 Transposase DDE domain DUF413 PF04219.7 gi|298675407|ref|YP_003727157.1| - 0.055 13.2 0.9 0.21 11.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF Spore_coat_CotO PF14153.1 gi|298675408|ref|YP_003727158.1| - 0.001 18.5 0.0 0.0012 18.3 0.0 1.1 1 0 0 1 1 1 1 Spore coat protein CotO Kringle PF00051.13 gi|298675408|ref|YP_003727158.1| - 0.015 15.3 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 Kringle domain Glu_synthase PF01645.12 gi|298675409|ref|YP_003727159.1| - 1.1e-12 47.5 0.0 3.8e-11 42.5 0.0 2.1 1 1 0 1 1 1 1 Conserved region in glutamate synthase DUF1284 PF06935.6 gi|298675410|ref|YP_003727160.1| - 5.6e-23 81.0 3.1 6.6e-23 80.8 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) DUF128 PF01995.11 gi|298675411|ref|YP_003727161.1| - 7.2e-89 296.7 4.7 9.4e-89 296.3 3.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|298675411|ref|YP_003727161.1| - 2.6e-31 107.1 1.2 5.1e-31 106.2 0.8 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.1 gi|298675411|ref|YP_003727161.1| - 0.03 14.3 0.2 0.073 13.0 0.1 1.6 1 0 0 1 1 1 0 HTH-like domain HTH_20 PF12840.2 gi|298675411|ref|YP_003727161.1| - 0.036 13.8 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ABC1 PF03109.11 gi|298675412|ref|YP_003727162.1| - 3.9e-38 130.0 0.0 6.9e-38 129.2 0.0 1.4 1 0 0 1 1 1 1 ABC1 family WaaY PF06176.6 gi|298675412|ref|YP_003727162.1| - 0.002 17.3 1.2 0.018 14.2 0.1 2.5 2 1 1 3 3 3 1 Lipopolysaccharide core biosynthesis protein (WaaY) APH PF01636.18 gi|298675412|ref|YP_003727162.1| - 0.0066 16.2 0.2 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|298675412|ref|YP_003727162.1| - 0.018 14.2 0.1 0.035 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein kinase domain DUF3303 PF11746.3 gi|298675413|ref|YP_003727163.1| - 7e-10 39.1 0.0 8.1e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3303) Y_Y_Y PF07495.8 gi|298675414|ref|YP_003727164.1| - 0.00034 20.3 0.0 0.68 9.7 0.0 2.7 2 0 0 2 2 2 2 Y_Y_Y domain FlgD_ig PF13860.1 gi|298675414|ref|YP_003727164.1| - 0.041 13.6 1.5 1.3 8.8 0.1 3.3 2 2 0 2 2 2 0 FlgD Ig-like domain Big_3_4 PF13754.1 gi|298675414|ref|YP_003727164.1| - 0.12 12.7 0.1 0.77 10.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Phasin PF05597.6 gi|298675415|ref|YP_003727165.1| - 1.4e-10 41.0 9.7 3.7e-09 36.4 6.7 2.0 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) BMFP PF04380.8 gi|298675415|ref|YP_003727165.1| - 0.0015 18.6 5.8 0.0035 17.4 4.0 1.7 1 1 0 1 1 1 1 Membrane fusogenic activity DUF1002 PF06207.6 gi|298675415|ref|YP_003727165.1| - 0.0075 15.6 10.2 0.0084 15.4 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1002) Osmo_CC PF08946.5 gi|298675415|ref|YP_003727165.1| - 0.011 15.7 4.5 0.011 15.7 3.1 3.3 2 1 1 3 3 3 0 Osmosensory transporter coiled coil DUF3288 PF11691.3 gi|298675415|ref|YP_003727165.1| - 0.041 13.6 1.2 0.17 11.6 0.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3288) DUF3349 PF11829.3 gi|298675415|ref|YP_003727165.1| - 0.043 14.2 1.7 0.19 12.1 1.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3349) CRISPR_Cse1 PF09481.5 gi|298675415|ref|YP_003727165.1| - 0.054 12.2 0.7 0.058 12.1 0.5 1.0 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) GatB_Yqey PF02637.13 gi|298675415|ref|YP_003727165.1| - 0.08 12.6 7.4 0.14 11.8 5.1 1.5 1 1 0 1 1 1 0 GatB domain DUF2120 PF09893.4 gi|298675415|ref|YP_003727165.1| - 0.084 12.8 6.2 0.12 12.2 4.3 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) PRESAN PF09687.5 gi|298675415|ref|YP_003727165.1| - 0.098 12.7 11.2 0.13 12.3 7.8 1.1 1 0 0 1 1 1 0 Plasmodium RESA N-terminal DUF1338 PF07063.8 gi|298675415|ref|YP_003727165.1| - 0.1 11.6 2.4 0.13 11.2 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) DUF3810 PF12725.2 gi|298675415|ref|YP_003727165.1| - 0.13 11.1 3.0 0.15 10.9 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) FadA PF09403.5 gi|298675415|ref|YP_003727165.1| - 0.13 12.2 11.1 0.16 11.9 7.7 1.1 1 0 0 1 1 1 0 Adhesion protein FadA DUF2127 PF09900.4 gi|298675415|ref|YP_003727165.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2127) DUF3826 PF12875.2 gi|298675415|ref|YP_003727165.1| - 0.18 11.5 9.3 0.22 11.2 6.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3826) TipAS PF07739.8 gi|298675415|ref|YP_003727165.1| - 0.25 11.6 5.6 2.9 8.2 2.1 2.1 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain Fib_alpha PF08702.5 gi|298675415|ref|YP_003727165.1| - 0.28 11.2 10.0 0.36 10.9 7.0 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.4 gi|298675415|ref|YP_003727165.1| - 0.35 11.0 10.7 0.16 12.0 4.5 2.2 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 G6PD_N PF00479.17 gi|298675415|ref|YP_003727165.1| - 0.37 10.9 4.1 0.75 10.0 2.8 1.6 1 1 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain DUF87 PF01935.12 gi|298675415|ref|YP_003727165.1| - 0.71 9.6 5.9 0.77 9.5 4.1 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF87 Syntaxin-6_N PF09177.6 gi|298675415|ref|YP_003727165.1| - 0.75 10.2 11.9 3.5 8.1 1.3 2.1 1 1 1 2 2 2 0 Syntaxin 6, N-terminal 3HCDH_N PF02737.13 gi|298675415|ref|YP_003727165.1| - 1.8 8.2 5.0 1.7 8.2 2.6 1.7 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ParB PF08775.5 gi|298675415|ref|YP_003727165.1| - 3 8.1 10.4 4.8 7.5 2.2 2.1 1 1 1 2 2 2 0 ParB family Methyltransf_14 PF08484.6 gi|298675415|ref|YP_003727165.1| - 3.2 7.2 5.8 3.1 7.3 2.6 1.8 1 1 1 2 2 2 0 C-methyltransferase C-terminal domain DUF4407 PF14362.1 gi|298675415|ref|YP_003727165.1| - 3.5 6.4 6.4 3.7 6.4 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fijivirus_P9-2 PF06837.6 gi|298675415|ref|YP_003727165.1| - 5.6 6.0 6.9 6.8 5.7 2.8 1.9 1 1 1 2 2 2 0 Fijivirus P9-2 protein APG6 PF04111.7 gi|298675415|ref|YP_003727165.1| - 5.7 5.8 12.8 6 5.8 8.9 1.0 1 0 0 1 1 1 0 Autophagy protein Apg6 PP2C_C PF07830.8 gi|298675415|ref|YP_003727165.1| - 6 7.0 7.2 6.4 6.9 1.6 2.2 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF2802 PF10975.3 gi|298675415|ref|YP_003727165.1| - 7.8 6.3 7.6 20 5.0 0.1 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2802) RHH_1 PF01402.16 gi|298675415|ref|YP_003727165.1| - 9.3 6.3 7.3 0.92 9.5 0.5 2.8 3 1 0 3 3 2 0 Ribbon-helix-helix protein, copG family MtrG PF04210.8 gi|298675415|ref|YP_003727165.1| - 9.6 5.9 9.3 2.9 7.6 0.2 3.0 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G ABC_tran PF00005.22 gi|298675416|ref|YP_003727166.1| - 2.1e-53 180.2 0.0 5e-28 98.1 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_15 PF13175.1 gi|298675416|ref|YP_003727166.1| - 3e-13 49.5 9.4 6.2e-06 25.5 0.2 4.3 3 1 1 4 4 4 4 AAA ATPase domain AAA_21 PF13304.1 gi|298675416|ref|YP_003727166.1| - 3.1e-13 50.3 17.0 8.2e-07 29.2 2.1 4.0 2 2 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|298675416|ref|YP_003727166.1| - 1e-08 34.5 0.5 8.2e-05 21.8 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|298675416|ref|YP_003727166.1| - 1.6e-08 35.3 2.7 0.01 16.6 0.0 3.9 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|298675416|ref|YP_003727166.1| - 2.3e-07 30.2 1.5 0.0082 15.6 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|298675416|ref|YP_003727166.1| - 4.7e-07 29.9 5.3 0.089 12.9 0.0 4.1 3 1 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|298675416|ref|YP_003727166.1| - 2.1e-06 27.8 0.7 0.11 12.5 0.0 3.2 3 1 0 3 3 3 2 AAA ATPase domain SbcCD_C PF13558.1 gi|298675416|ref|YP_003727166.1| - 2.3e-06 27.4 0.4 0.0029 17.5 0.0 3.5 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|298675416|ref|YP_003727166.1| - 7.4e-06 25.5 0.0 0.16 11.3 0.0 3.8 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|298675416|ref|YP_003727166.1| - 7.9e-06 26.3 13.8 0.00055 20.3 1.9 3.4 2 1 1 3 3 3 2 AAA domain NB-ARC PF00931.17 gi|298675416|ref|YP_003727166.1| - 1.5e-05 23.9 0.9 0.15 10.8 0.0 2.8 3 0 0 3 3 2 2 NB-ARC domain cobW PF02492.14 gi|298675416|ref|YP_003727166.1| - 1.5e-05 24.4 0.3 0.11 11.9 0.0 2.6 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|298675416|ref|YP_003727166.1| - 2.7e-05 23.8 0.3 0.21 11.2 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|298675416|ref|YP_003727166.1| - 3.2e-05 23.6 0.0 0.23 10.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|298675416|ref|YP_003727166.1| - 8.6e-05 22.1 0.1 0.24 11.0 0.0 2.7 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|298675416|ref|YP_003727166.1| - 9.4e-05 22.2 1.2 0.19 11.4 0.0 3.4 3 1 0 3 3 3 2 Archaeal ATPase AAA_19 PF13245.1 gi|298675416|ref|YP_003727166.1| - 0.00019 21.1 0.1 0.2 11.4 0.1 2.9 3 0 0 3 3 3 1 Part of AAA domain AAA_10 PF12846.2 gi|298675416|ref|YP_003727166.1| - 0.00021 20.8 0.0 0.24 10.8 0.0 2.7 2 0 0 2 2 2 2 AAA-like domain Zeta_toxin PF06414.7 gi|298675416|ref|YP_003727166.1| - 0.00047 19.3 0.0 0.42 9.6 0.0 2.3 2 0 0 2 2 2 2 Zeta toxin T2SE PF00437.15 gi|298675416|ref|YP_003727166.1| - 0.00049 19.0 0.0 0.039 12.8 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|298675416|ref|YP_003727166.1| - 0.0007 19.1 0.4 0.5 9.8 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|298675416|ref|YP_003727166.1| - 0.00088 18.9 3.6 0.71 9.5 0.2 3.1 3 0 0 3 3 3 2 NACHT domain ABC_ATPase PF09818.4 gi|298675416|ref|YP_003727166.1| - 0.00095 17.8 1.3 0.45 9.0 0.1 3.4 5 0 0 5 5 4 1 Predicted ATPase of the ABC class PRK PF00485.13 gi|298675416|ref|YP_003727166.1| - 0.00096 18.7 0.1 0.35 10.3 0.1 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|298675416|ref|YP_003727166.1| - 0.00096 19.0 0.1 0.17 11.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain PIF1 PF05970.9 gi|298675416|ref|YP_003727166.1| - 0.0032 16.4 0.4 2.4 7.0 0.0 3.5 3 1 1 4 4 4 1 PIF1-like helicase Miro PF08477.8 gi|298675416|ref|YP_003727166.1| - 0.0033 17.9 0.0 5.2 7.5 0.0 3.0 3 0 0 3 3 2 0 Miro-like protein NTPase_1 PF03266.10 gi|298675416|ref|YP_003727166.1| - 0.0048 16.6 0.7 0.26 11.0 0.1 2.5 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.1 gi|298675416|ref|YP_003727166.1| - 0.0048 16.7 0.7 6.3 6.7 0.0 3.6 4 1 0 4 4 3 0 AAA domain AAA PF00004.24 gi|298675416|ref|YP_003727166.1| - 0.0085 16.2 0.2 28 4.9 0.0 4.0 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|298675416|ref|YP_003727166.1| - 0.0088 16.0 0.5 3.3 7.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain Pox_A32 PF04665.7 gi|298675416|ref|YP_003727166.1| - 0.01 15.1 0.3 2.9 7.1 0.0 2.5 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_24 PF13479.1 gi|298675416|ref|YP_003727166.1| - 0.017 14.7 0.1 3.1 7.3 0.0 2.8 3 0 0 3 3 2 0 AAA domain APS_kinase PF01583.15 gi|298675416|ref|YP_003727166.1| - 0.018 14.7 0.1 6.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_18 PF13238.1 gi|298675416|ref|YP_003727166.1| - 0.019 15.2 9.8 0.11 12.8 0.1 3.7 3 1 0 3 3 3 0 AAA domain G-alpha PF00503.15 gi|298675416|ref|YP_003727166.1| - 0.024 13.3 0.1 0.76 8.4 0.0 2.4 2 0 0 2 2 2 0 G-protein alpha subunit DUF927 PF06048.6 gi|298675416|ref|YP_003727166.1| - 0.03 13.5 0.1 4.2 6.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) FtsK_SpoIIIE PF01580.13 gi|298675416|ref|YP_003727166.1| - 0.032 13.7 0.2 5.8 6.3 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family ArgK PF03308.11 gi|298675416|ref|YP_003727166.1| - 0.032 13.0 0.3 0.22 10.2 0.0 2.0 2 0 0 2 2 2 0 ArgK protein MMR_HSR1 PF01926.18 gi|298675416|ref|YP_003727166.1| - 0.034 14.0 1.1 13 5.7 0.1 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|298675416|ref|YP_003727166.1| - 0.039 13.7 1.0 8.2 6.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function DUF87 PhoH PF02562.11 gi|298675416|ref|YP_003727166.1| - 0.051 12.8 0.3 16 4.6 0.0 3.0 3 0 0 3 3 3 0 PhoH-like protein KaiC PF06745.8 gi|298675416|ref|YP_003727166.1| - 0.18 10.8 1.1 9.7 5.2 0.1 2.7 2 0 0 2 2 2 0 KaiC PcrB PF01884.12 gi|298675417|ref|YP_003727167.1| - 2.4e-79 265.8 1.5 2.8e-79 265.6 1.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|298675417|ref|YP_003727167.1| - 5.9e-07 28.9 0.1 1.7e-06 27.5 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.9 gi|298675417|ref|YP_003727167.1| - 0.0016 17.4 0.5 0.0099 14.8 0.1 2.0 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.15 gi|298675417|ref|YP_003727167.1| - 0.0021 16.6 0.2 0.0042 15.6 0.1 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|298675417|ref|YP_003727167.1| - 0.013 14.6 0.1 0.022 13.8 0.1 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family MlrC_C PF07171.7 gi|298675417|ref|YP_003727167.1| - 0.017 14.7 2.1 0.26 10.8 0.2 2.3 2 0 0 2 2 2 0 MlrC C-terminus ThiG PF05690.9 gi|298675417|ref|YP_003727167.1| - 0.36 9.8 5.0 0.29 10.1 0.6 2.2 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG Ribosomal_L40e PF01020.12 gi|298675418|ref|YP_003727168.1| - 8.8e-05 22.0 4.6 0.0001 21.8 3.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|298675418|ref|YP_003727168.1| - 0.001 18.8 1.3 0.0011 18.7 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|298675418|ref|YP_003727168.1| - 0.003 16.9 4.0 0.003 16.9 2.8 1.5 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|298675418|ref|YP_003727168.1| - 0.019 14.4 1.3 0.026 14.0 0.9 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298675418|ref|YP_003727168.1| - 0.07 12.3 2.4 0.093 11.9 1.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-DHHC PF01529.15 gi|298675418|ref|YP_003727168.1| - 0.13 11.5 1.9 0.14 11.4 1.3 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase HypA PF01155.14 gi|298675418|ref|YP_003727168.1| - 0.18 11.5 1.3 0.2 11.3 0.9 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|298675418|ref|YP_003727168.1| - 2.4 7.9 6.1 15 5.4 4.2 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit OrfB_IS605 PF01385.14 gi|298675419|ref|YP_003727169.1| - 1.1e-41 142.6 6.5 1.1e-41 142.6 4.5 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675419|ref|YP_003727169.1| - 1.6e-23 82.1 0.3 3.1e-23 81.2 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675419|ref|YP_003727169.1| - 6.3e-20 70.2 1.8 1.5e-19 68.9 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_GP20 PF06810.6 gi|298675419|ref|YP_003727169.1| - 0.3 10.5 8.9 0.096 12.1 2.3 2.3 2 0 0 2 2 2 0 Phage minor structural protein GP20 Occludin_ELL PF07303.8 gi|298675419|ref|YP_003727169.1| - 0.7 10.6 8.6 0.31 11.7 2.6 2.4 2 0 0 2 2 2 0 Occludin homology domain M_domain PF12938.2 gi|298675419|ref|YP_003727169.1| - 1.2 8.8 7.5 0.17 11.6 1.7 1.9 2 0 0 2 2 2 0 M domain of GW182 ATP-grasp_4 PF13535.1 gi|298675420|ref|YP_003727170.1| - 6.9e-20 71.5 0.0 1.1e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|298675420|ref|YP_003727170.1| - 0.00013 20.8 0.0 0.0005 18.9 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|298675420|ref|YP_003727170.1| - 0.0052 16.0 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|298675420|ref|YP_003727170.1| - 0.0076 16.1 0.1 0.014 15.2 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|298675420|ref|YP_003727170.1| - 0.035 13.4 0.1 8.2 5.7 0.1 2.4 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus Pribosyltran PF00156.22 gi|298675420|ref|YP_003727170.1| - 0.14 11.8 0.0 0.46 10.2 0.0 1.8 1 0 0 1 1 1 0 Phosphoribosyl transferase domain Amidohydro_1 PF01979.15 gi|298675421|ref|YP_003727171.1| - 3.9e-43 148.3 1.6 4.6e-43 148.1 1.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|298675421|ref|YP_003727171.1| - 1.7e-16 61.1 0.0 4.2e-14 53.2 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|298675421|ref|YP_003727171.1| - 6.8e-16 58.4 1.5 1.9e-12 47.1 0.0 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|298675421|ref|YP_003727171.1| - 3.2e-10 39.6 1.8 5.1e-10 39.0 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase AP_endonuc_2 PF01261.19 gi|298675421|ref|YP_003727171.1| - 0.016 14.5 0.0 0.11 11.7 0.0 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel STT3 PF02516.9 gi|298675422|ref|YP_003727172.1| - 0.074 12.0 3.1 0.082 11.8 2.2 1.0 1 0 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit DUF1206 PF06724.6 gi|298675422|ref|YP_003727172.1| - 0.086 12.6 2.6 1.1 9.1 0.5 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) UbiA PF01040.13 gi|298675422|ref|YP_003727172.1| - 0.11 11.6 2.9 0.14 11.3 2.0 1.2 1 0 0 1 1 1 0 UbiA prenyltransferase family HIG_1_N PF04588.8 gi|298675422|ref|YP_003727172.1| - 0.42 10.3 3.3 0.32 10.7 0.3 1.9 1 1 1 2 2 2 0 Hypoxia induced protein conserved region DUF1129 PF06570.6 gi|298675422|ref|YP_003727172.1| - 0.82 8.9 4.3 0.88 8.8 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) YjgP_YjgQ PF03739.9 gi|298675422|ref|YP_003727172.1| - 3.8 6.1 6.9 4.2 6.0 4.8 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family DUF1469 PF07332.6 gi|298675422|ref|YP_003727172.1| - 9.3 6.0 6.5 14 5.4 4.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Hist_deacetyl PF00850.14 gi|298675423|ref|YP_003727173.1| - 8.7e-93 311.0 0.2 1e-92 310.7 0.2 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DUF2088 PF09861.4 gi|298675424|ref|YP_003727174.1| - 1.9e-72 242.6 0.0 3e-72 241.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) SSF PF00474.12 gi|298675425|ref|YP_003727175.1| - 8.4e-62 209.1 41.4 1.2e-61 208.6 28.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2611 PF11022.3 gi|298675425|ref|YP_003727175.1| - 0.25 11.4 2.1 1.2 9.2 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2611) RCR PF12273.3 gi|298675425|ref|YP_003727175.1| - 1.9 9.0 5.0 41 4.7 0.0 2.6 2 0 0 2 2 2 0 Chitin synthesis regulation, resistance to Congo red Methyltransf_31 PF13847.1 gi|298675427|ref|YP_003727177.1| - 7.8e-27 93.7 0.1 1.4e-26 92.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298675427|ref|YP_003727177.1| - 1.7e-22 79.6 0.0 3.4e-22 78.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298675427|ref|YP_003727177.1| - 1.7e-19 70.1 0.0 3.3e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298675427|ref|YP_003727177.1| - 3e-16 59.6 0.0 5.6e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298675427|ref|YP_003727177.1| - 8.2e-16 57.8 0.0 2.8e-15 56.0 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|298675427|ref|YP_003727177.1| - 1.1e-15 57.7 0.0 2e-15 56.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675427|ref|YP_003727177.1| - 3.7e-14 53.2 0.0 6.2e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|298675427|ref|YP_003727177.1| - 1.7e-11 43.5 0.0 3.5e-11 42.5 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase MTS PF05175.9 gi|298675427|ref|YP_003727177.1| - 9.8e-11 41.3 0.0 1.5e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|298675427|ref|YP_003727177.1| - 1.3e-05 24.8 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|298675427|ref|YP_003727177.1| - 1.3e-05 24.9 0.0 0.00028 20.5 0.0 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|298675427|ref|YP_003727177.1| - 1.4e-05 24.3 0.0 2.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|298675427|ref|YP_003727177.1| - 5.8e-05 23.0 0.0 9.1e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|298675427|ref|YP_003727177.1| - 7.6e-05 22.3 1.0 0.00011 21.8 0.1 1.6 2 0 0 2 2 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_9 PF08003.6 gi|298675427|ref|YP_003727177.1| - 0.00019 20.2 0.0 0.00031 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) DREV PF05219.7 gi|298675427|ref|YP_003727177.1| - 0.00042 19.2 0.0 0.00072 18.5 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.1 gi|298675427|ref|YP_003727177.1| - 0.00054 19.6 0.0 0.00085 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|298675427|ref|YP_003727177.1| - 0.0011 17.9 0.0 0.0015 17.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) UPF0020 PF01170.13 gi|298675427|ref|YP_003727177.1| - 0.0018 17.8 0.1 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 N2227 PF07942.7 gi|298675427|ref|YP_003727177.1| - 0.0022 16.9 0.2 0.1 11.5 0.0 2.2 1 1 1 2 2 2 1 N2227-like protein NodS PF05401.6 gi|298675427|ref|YP_003727177.1| - 0.0025 17.2 0.0 0.0036 16.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|298675427|ref|YP_003727177.1| - 0.0029 17.0 0.0 0.0057 16.0 0.0 1.5 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW N6_Mtase PF02384.11 gi|298675427|ref|YP_003727177.1| - 0.003 16.6 0.0 0.0051 15.9 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase RrnaAD PF00398.15 gi|298675427|ref|YP_003727177.1| - 0.0031 16.5 0.0 0.0049 15.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DOT1 PF08123.8 gi|298675427|ref|YP_003727177.1| - 0.0039 16.5 0.0 0.0075 15.6 0.0 1.5 1 0 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.8 gi|298675427|ref|YP_003727177.1| - 0.025 13.7 0.0 0.042 12.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.11 gi|298675427|ref|YP_003727177.1| - 0.06 11.6 0.0 0.091 11.0 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase UPF0066 PF01980.11 gi|298675427|ref|YP_003727177.1| - 0.13 12.1 0.0 0.49 10.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0066 Metallophos_2 PF12850.2 gi|298675428|ref|YP_003727178.1| - 3.9e-25 88.5 0.3 4.4e-25 88.3 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|298675428|ref|YP_003727178.1| - 0.0006 19.0 0.2 0.91 8.6 0.0 2.3 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|298675428|ref|YP_003727178.1| - 0.0012 18.2 2.2 0.09 12.1 1.5 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Macro PF01661.16 gi|298675429|ref|YP_003727179.1| - 5.1e-45 152.1 0.2 6.7e-45 151.8 0.2 1.2 1 0 0 1 1 1 1 Macro domain CCG PF02754.11 gi|298675430|ref|YP_003727180.1| - 3.9e-21 74.8 1.4 3.9e-14 52.4 0.0 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|298675430|ref|YP_003727180.1| - 2.2e-09 37.2 4.9 2.2e-09 37.1 1.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675430|ref|YP_003727180.1| - 5.4e-08 33.4 5.1 1.7e-07 31.8 3.5 1.9 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|298675430|ref|YP_003727180.1| - 4.7e-07 30.0 2.3 4.7e-07 30.0 1.6 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675430|ref|YP_003727180.1| - 8.2e-07 29.3 3.9 8.2e-07 29.3 2.7 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675430|ref|YP_003727180.1| - 8.7e-07 29.1 5.2 8.7e-07 29.1 3.6 3.2 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298675430|ref|YP_003727180.1| - 4.1e-06 27.1 9.6 0.025 14.9 0.0 3.6 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675430|ref|YP_003727180.1| - 5.8e-06 25.6 14.7 0.0063 16.0 3.0 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675430|ref|YP_003727180.1| - 1.6e-05 24.5 7.4 1.6e-05 24.5 5.1 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675430|ref|YP_003727180.1| - 0.00027 20.6 12.1 0.004 16.9 1.5 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298675430|ref|YP_003727180.1| - 0.0016 18.6 1.9 0.0016 18.6 1.3 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|298675430|ref|YP_003727180.1| - 0.012 16.0 5.3 0.14 12.5 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|298675430|ref|YP_003727180.1| - 0.021 14.6 13.1 1.2 9.0 8.2 3.2 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298675430|ref|YP_003727180.1| - 0.092 13.3 1.3 0.092 13.3 0.9 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298675430|ref|YP_003727180.1| - 0.1 12.5 16.1 0.15 12.0 2.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain PK PF00224.16 gi|298675431|ref|YP_003727181.1| - 8.3e-123 409.4 4.5 1.1e-122 408.9 3.1 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|298675431|ref|YP_003727181.1| - 2.9e-20 71.9 0.0 8.2e-20 70.5 0.0 1.8 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|298675431|ref|YP_003727181.1| - 1.4e-05 24.0 1.1 3.9e-05 22.6 0.8 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family ApoL PF05461.6 gi|298675431|ref|YP_003727181.1| - 0.085 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Apolipoprotein L GATA-N PF05349.7 gi|298675431|ref|YP_003727181.1| - 0.17 12.0 0.0 0.27 11.3 0.0 1.2 1 0 0 1 1 1 0 GATA-type transcription activator, N-terminal HATPase_c PF02518.21 gi|298675432|ref|YP_003727182.1| - 2.1e-32 111.1 0.1 7e-32 109.4 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|298675432|ref|YP_003727182.1| - 8.3e-20 70.5 0.1 2.8e-19 68.8 0.0 2.0 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|298675432|ref|YP_003727182.1| - 1.2e-18 66.9 0.0 3.3e-18 65.5 0.0 1.8 1 0 0 1 1 1 1 PAS fold Cache_1 PF02743.13 gi|298675432|ref|YP_003727182.1| - 1.2e-15 56.7 0.1 4.8e-15 54.8 0.1 2.0 1 0 0 1 1 1 1 Cache domain HAMP PF00672.20 gi|298675432|ref|YP_003727182.1| - 7.3e-09 35.6 0.0 0.00049 20.2 0.0 3.4 3 0 0 3 3 3 2 HAMP domain PAS_9 PF13426.1 gi|298675432|ref|YP_003727182.1| - 2.7e-07 30.8 0.3 8.5e-07 29.3 0.2 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|298675432|ref|YP_003727182.1| - 1.7e-06 27.7 0.0 1.9e-05 24.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|298675432|ref|YP_003727182.1| - 0.00012 21.7 0.0 0.00053 19.6 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Bromodomain PF00439.20 gi|298675432|ref|YP_003727182.1| - 0.001 18.9 1.4 0.0089 15.9 0.3 2.8 2 0 0 2 2 2 1 Bromodomain HATPase_c_2 PF13581.1 gi|298675432|ref|YP_003727182.1| - 0.0015 18.2 0.0 0.0034 17.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3333 PF11812.3 gi|298675432|ref|YP_003727182.1| - 0.0053 16.7 0.7 0.014 15.3 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3333) PAS_4 PF08448.5 gi|298675432|ref|YP_003727182.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 PAS fold Cache_2 PF08269.6 gi|298675432|ref|YP_003727182.1| - 0.022 14.7 0.3 0.28 11.2 0.0 2.8 2 0 0 2 2 2 0 Cache domain MCP_N PF05581.7 gi|298675432|ref|YP_003727182.1| - 0.091 12.9 4.7 2.3 8.4 0.1 3.1 3 0 0 3 3 2 0 Vibrio chemotaxis protein N terminus PAH PF02671.16 gi|298675432|ref|YP_003727182.1| - 0.12 11.9 1.4 25 4.5 0.1 4.1 3 0 0 3 3 3 0 Paired amphipathic helix repeat PMSR PF01625.16 gi|298675433|ref|YP_003727183.1| - 6.6e-67 224.2 1.7 7.3e-67 224.1 1.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase ATP_bind_4 PF01902.12 gi|298675434|ref|YP_003727184.1| - 6.2e-70 234.9 1.6 7e-70 234.7 1.1 1.0 1 0 0 1 1 1 1 ATP-binding region PFO_beta_C PF12367.3 gi|298675434|ref|YP_003727184.1| - 0.018 14.9 0.1 0.42 10.5 0.0 2.4 2 0 0 2 2 2 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal ThiI PF02568.9 gi|298675434|ref|YP_003727184.1| - 0.041 13.3 0.0 0.18 11.2 0.0 2.0 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|298675434|ref|YP_003727184.1| - 0.054 12.9 0.1 0.089 12.2 0.0 1.3 1 1 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|298675434|ref|YP_003727184.1| - 0.064 11.8 0.0 0.12 10.8 0.0 1.6 1 0 0 1 1 1 0 tRNA methyl transferase Asn_synthase PF00733.16 gi|298675435|ref|YP_003727185.1| - 1.6e-46 158.9 0.0 5.8e-46 157.0 0.0 1.8 1 1 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|298675435|ref|YP_003727185.1| - 2.2e-13 50.0 0.0 4.4e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|298675435|ref|YP_003727185.1| - 2.1e-06 27.7 0.0 7.9e-06 25.8 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain NAD_synthase PF02540.12 gi|298675435|ref|YP_003727185.1| - 0.00071 18.5 0.2 0.0039 16.1 0.1 2.2 1 1 1 2 2 2 1 NAD synthase tRNA_Me_trans PF03054.11 gi|298675435|ref|YP_003727185.1| - 0.002 16.7 0.0 0.0032 16.0 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|298675435|ref|YP_003727185.1| - 0.003 17.0 0.0 0.0074 15.7 0.0 1.6 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|298675435|ref|YP_003727185.1| - 0.029 13.6 0.0 0.054 12.7 0.0 1.6 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC Virulence_fact PF13769.1 gi|298675435|ref|YP_003727185.1| - 0.15 11.9 0.3 1.9 8.4 0.1 2.5 2 0 0 2 2 2 0 Virulence factor RQC PF09382.5 gi|298675436|ref|YP_003727186.1| - 3.1e-28 97.5 0.7 7.9e-28 96.2 0.5 1.7 1 0 0 1 1 1 1 RQC domain DEAD PF00270.24 gi|298675436|ref|YP_003727186.1| - 2.8e-22 79.0 0.0 2.5e-20 72.6 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|298675436|ref|YP_003727186.1| - 6.4e-22 77.2 0.0 4e-20 71.4 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HRDC PF00570.18 gi|298675436|ref|YP_003727186.1| - 3.1e-21 74.8 0.0 5.6e-21 74.0 0.0 1.5 1 0 0 1 1 1 1 HRDC domain ResIII PF04851.10 gi|298675436|ref|YP_003727186.1| - 1.8e-06 27.8 0.0 9.6e-06 25.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|298675436|ref|YP_003727186.1| - 1.7e-05 23.8 0.0 3e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_Sgs1 PF11408.3 gi|298675436|ref|YP_003727186.1| - 0.00072 19.3 0.0 0.0024 17.6 0.0 1.8 1 0 0 1 1 1 1 Sgs1 RecQ helicase DUF573 PF04504.9 gi|298675436|ref|YP_003727186.1| - 0.026 14.7 1.3 0.064 13.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF573 HHH PF00633.18 gi|298675436|ref|YP_003727186.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif SKI PF01202.17 gi|298675436|ref|YP_003727186.1| - 0.064 13.1 0.0 0.19 11.6 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase CobN-Mg_chel PF02514.11 gi|298675436|ref|YP_003727186.1| - 0.12 9.7 0.0 0.2 9.0 0.0 1.3 1 0 0 1 1 1 0 CobN/Magnesium Chelatase GMP_synt_C PF00958.17 gi|298675437|ref|YP_003727187.1| - 9e-31 105.4 0.0 2.1e-30 104.3 0.0 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|298675437|ref|YP_003727187.1| - 2.7e-11 42.8 0.1 1.3e-10 40.5 0.1 1.9 1 1 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|298675437|ref|YP_003727187.1| - 3.8e-05 23.0 0.0 0.00029 20.1 0.0 2.0 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|298675437|ref|YP_003727187.1| - 6.4e-05 21.6 0.0 0.0055 15.3 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.9 gi|298675437|ref|YP_003727187.1| - 0.00038 19.9 0.0 0.0013 18.2 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|298675437|ref|YP_003727187.1| - 0.0011 18.5 0.0 0.0019 17.7 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|298675437|ref|YP_003727187.1| - 0.0062 16.0 0.0 0.011 15.3 0.0 1.4 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|298675437|ref|YP_003727187.1| - 0.019 14.0 0.2 0.06 12.3 0.0 1.8 2 0 0 2 2 2 0 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|298675437|ref|YP_003727187.1| - 0.033 14.0 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family SbcD_C PF12320.3 gi|298675437|ref|YP_003727187.1| - 0.051 13.6 0.9 0.12 12.4 0.1 2.0 2 1 0 2 2 2 0 Type 5 capsule protein repressor C-terminal domain Radical_SAM PF04055.16 gi|298675438|ref|YP_003727188.1| - 0.0031 17.7 0.2 0.009 16.1 0.1 1.9 1 1 0 1 1 1 1 Radical SAM superfamily UvrD_C PF13361.1 gi|298675438|ref|YP_003727188.1| - 0.067 12.6 0.2 0.086 12.2 0.1 1.2 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain Snf7 PF03357.16 gi|298675438|ref|YP_003727188.1| - 0.1 11.9 0.5 0.24 10.7 0.2 1.7 2 0 0 2 2 2 0 Snf7 PPP5 PF08321.7 gi|298675438|ref|YP_003727188.1| - 0.17 11.9 1.4 9.7 6.2 0.1 2.5 2 0 0 2 2 2 0 PPP5 TPR repeat region AA_kinase PF00696.23 gi|298675439|ref|YP_003727189.1| - 8.2e-44 149.9 4.3 9.4e-44 149.7 3.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family MC1 PF05854.6 gi|298675440|ref|YP_003727190.1| - 7.4e-46 154.0 3.5 8.4e-46 153.9 2.4 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 GCHY-1 PF02649.9 gi|298675441|ref|YP_003727191.1| - 7.8e-91 304.1 3.7 8.8e-91 303.9 2.6 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DREPP PF05558.7 gi|298675441|ref|YP_003727191.1| - 0.015 15.1 2.6 0.12 12.2 0.4 2.9 3 0 0 3 3 3 0 DREPP plasma membrane polypeptide DUF577 PF04510.7 gi|298675441|ref|YP_003727191.1| - 0.066 12.9 2.1 2.8 7.6 0.2 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF577) GCC2_GCC3 PF07699.8 gi|298675442|ref|YP_003727192.1| - 0.00085 18.8 3.7 0.0012 18.3 2.6 1.2 1 0 0 1 1 1 1 GCC2 and GCC3 DZR PF12773.2 gi|298675442|ref|YP_003727192.1| - 0.0017 18.1 3.9 0.0028 17.4 2.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|298675442|ref|YP_003727192.1| - 0.0023 17.5 2.1 0.0023 17.5 1.5 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|298675442|ref|YP_003727192.1| - 0.0035 17.0 2.0 0.0035 17.0 1.4 1.5 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|298675442|ref|YP_003727192.1| - 0.0062 16.4 1.7 1.2 9.1 0.2 2.2 2 0 0 2 2 2 1 zinc-finger zf-RING_5 PF14634.1 gi|298675442|ref|YP_003727192.1| - 0.0074 15.9 1.9 0.0074 15.9 1.3 1.5 2 0 0 2 2 2 1 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|298675442|ref|YP_003727192.1| - 0.011 15.3 1.1 0.011 15.3 0.7 1.5 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|298675442|ref|YP_003727192.1| - 0.017 15.0 5.3 0.017 15.0 3.7 2.4 2 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|298675442|ref|YP_003727192.1| - 0.019 14.7 2.8 2 8.3 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|298675442|ref|YP_003727192.1| - 0.022 14.2 3.0 0.022 14.2 2.1 1.8 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|298675442|ref|YP_003727192.1| - 0.022 14.3 9.4 0.2 11.3 0.1 2.6 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) CcmH PF03918.9 gi|298675442|ref|YP_003727192.1| - 0.034 13.1 0.2 0.034 13.1 0.1 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein zinc-ribbons_6 PF07191.7 gi|298675442|ref|YP_003727192.1| - 0.046 13.5 3.2 0.065 13.0 2.2 1.4 1 1 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1 PF03811.8 gi|298675442|ref|YP_003727192.1| - 0.049 13.1 0.5 0.049 13.1 0.4 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_2 PF13639.1 gi|298675442|ref|YP_003727192.1| - 0.054 13.3 0.9 0.076 12.8 0.6 1.4 1 1 0 1 1 1 0 Ring finger domain zinc_ribbon_5 PF13719.1 gi|298675442|ref|YP_003727192.1| - 0.068 12.7 8.1 4.6 6.9 4.7 2.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-AD PF07776.10 gi|298675442|ref|YP_003727192.1| - 0.11 12.5 0.2 0.11 12.5 0.1 1.7 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) TF_Zn_Ribbon PF08271.7 gi|298675442|ref|YP_003727192.1| - 0.11 11.7 10.6 0.91 8.8 0.5 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF2197 PF09963.4 gi|298675442|ref|YP_003727192.1| - 0.15 12.0 1.8 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc_ribbon_4 PF13717.1 gi|298675442|ref|YP_003727192.1| - 0.16 11.6 8.3 8.6 6.1 4.9 2.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|298675442|ref|YP_003727192.1| - 0.17 11.7 1.8 0.81 9.6 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain ADK_lid PF05191.9 gi|298675442|ref|YP_003727192.1| - 0.21 11.2 7.6 0.083 12.5 2.0 2.0 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF4428 PF14471.1 gi|298675442|ref|YP_003727192.1| - 0.33 10.7 4.8 1.3 8.8 3.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) FYDLN_acid PF09538.5 gi|298675442|ref|YP_003727192.1| - 0.4 11.2 5.7 0.4 11.2 3.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Rubredoxin PF00301.15 gi|298675442|ref|YP_003727192.1| - 0.42 10.5 6.9 12 5.8 4.8 2.5 1 1 0 1 1 1 0 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|298675442|ref|YP_003727192.1| - 0.43 10.1 3.5 3.4 7.3 1.3 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger C1_4 PF07975.7 gi|298675442|ref|YP_003727192.1| - 0.49 10.4 5.6 0.69 9.9 0.4 2.1 1 1 1 2 2 2 0 TFIIH C1-like domain PHD PF00628.24 gi|298675442|ref|YP_003727192.1| - 0.51 10.0 7.3 1.1 8.9 2.1 2.5 2 1 0 2 2 2 0 PHD-finger zf-B_box PF00643.19 gi|298675442|ref|YP_003727192.1| - 0.51 10.2 2.9 14 5.7 0.1 2.3 2 0 0 2 2 2 0 B-box zinc finger zinc_ribbon_2 PF13240.1 gi|298675442|ref|YP_003727192.1| - 0.58 9.7 6.9 2.5 7.6 0.3 2.8 2 1 1 3 3 3 0 zinc-ribbon domain Gin PF10764.4 gi|298675442|ref|YP_003727192.1| - 1 9.0 5.0 0.53 10.0 1.0 2.0 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin zf-ribbon_3 PF13248.1 gi|298675442|ref|YP_003727192.1| - 1.9 7.8 7.1 0.83 8.9 0.4 2.8 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_4 PF14570.1 gi|298675442|ref|YP_003727192.1| - 2.2 7.9 9.0 5.9 6.5 6.2 1.8 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-trcl PF13451.1 gi|298675442|ref|YP_003727192.1| - 2.6 7.7 6.0 1.4e+02 2.2 4.1 2.2 1 1 0 1 1 1 0 Probable zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|298675442|ref|YP_003727192.1| - 9.3 6.1 8.2 3.9 7.3 0.3 2.4 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF2098 PF09871.4 gi|298675444|ref|YP_003727194.1| - 4e-20 71.5 0.8 5.6e-20 71.0 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) NTP_transf_2 PF01909.18 gi|298675445|ref|YP_003727195.1| - 1.2e-05 25.5 0.2 3.5e-05 24.0 0.1 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain H_PPase PF03030.11 gi|298675446|ref|YP_003727196.1| - 1.3e-271 902.8 53.2 1.5e-271 902.6 36.9 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Orthopox_A5L PF06193.6 gi|298675447|ref|YP_003727197.1| - 0.14 12.0 2.2 0.3 11.0 0.2 2.0 2 0 0 2 2 2 0 Orthopoxvirus A5L protein-like Pterin_bind PF00809.17 gi|298675448|ref|YP_003727198.1| - 3.1e-11 43.0 3.2 3.9e-11 42.7 1.2 1.9 2 0 0 2 2 2 1 Pterin binding enzyme DUF4346 PF14251.1 gi|298675448|ref|YP_003727198.1| - 2.9e-09 36.6 0.1 2.3e-08 33.8 0.0 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|298675448|ref|YP_003727198.1| - 0.00011 20.7 0.7 0.00028 19.5 0.1 1.8 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit GcpE PF04551.9 gi|298675448|ref|YP_003727198.1| - 0.029 13.1 0.1 0.05 12.4 0.1 1.4 1 0 0 1 1 1 0 GcpE protein FtsZ_C PF12327.3 gi|298675449|ref|YP_003727199.1| - 2.5e-32 110.7 0.2 9.1e-32 109.0 0.0 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|298675449|ref|YP_003727199.1| - 3.1e-31 108.9 0.6 1.3e-30 106.8 0.4 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|298675449|ref|YP_003727199.1| - 0.029 14.1 1.1 0.1 12.3 0.0 2.3 3 0 0 3 3 3 0 ThiF family Prok-JAB PF14464.1 gi|298675450|ref|YP_003727200.1| - 2.1e-11 43.3 0.0 2.6e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|298675450|ref|YP_003727200.1| - 0.00084 19.0 0.0 0.0024 17.6 0.0 1.7 1 1 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|298675450|ref|YP_003727200.1| - 0.00085 19.0 0.1 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|298675450|ref|YP_003727200.1| - 0.032 14.1 0.0 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 JAB-like toxin 1 DUF2099 PF09872.4 gi|298675451|ref|YP_003727201.1| - 2.2e-111 371.0 2.5 2.5e-111 370.8 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) AMP-binding_C_2 PF14535.1 gi|298675452|ref|YP_003727202.1| - 7.5e-29 99.6 0.8 2.4e-28 98.0 0.6 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|298675452|ref|YP_003727202.1| - 7.8e-21 73.9 0.3 1.8e-20 72.7 0.2 1.5 1 1 0 1 1 1 1 AMP-binding enzyme GH3 PF03321.8 gi|298675452|ref|YP_003727202.1| - 0.0065 15.0 0.0 0.13 10.7 0.0 2.1 2 0 0 2 2 2 1 GH3 auxin-responsive promoter Ig_J_chain PF15097.1 gi|298675452|ref|YP_003727202.1| - 0.12 11.9 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 Immunoglobulin J chain OrfB_IS605 PF01385.14 gi|298675453|ref|YP_003727203.1| - 8.5e-34 116.9 7.3 1.2e-33 116.3 5.1 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675453|ref|YP_003727203.1| - 4.4e-19 67.9 0.3 9.7e-19 66.7 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675453|ref|YP_003727203.1| - 4.5e-07 29.0 0.2 8.9e-07 28.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Peptidase_MA_2 PF13485.1 gi|298675454|ref|YP_003727204.1| - 1.2e-06 28.6 0.1 3.4e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 Peptidase MA superfamily HARP PF07443.8 gi|298675454|ref|YP_003727204.1| - 6e-05 22.3 0.2 0.00083 18.6 0.1 2.7 2 0 0 2 2 2 1 HepA-related protein (HARP) HTH_45 PF14947.1 gi|298675455|ref|YP_003727205.1| - 2.3e-24 85.0 3.0 2.6e-24 84.8 2.1 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix RNA_pol_Rpc34 PF05158.7 gi|298675455|ref|YP_003727205.1| - 0.0043 16.2 0.4 0.0051 16.0 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit DUF95 PF01944.12 gi|298675456|ref|YP_003727206.1| - 2 7.9 12.2 4 7.0 8.4 1.5 1 1 0 1 1 1 0 Integral membrane protein DUF95 Exosortase_EpsH PF09721.5 gi|298675457|ref|YP_003727207.1| - 1.4e-11 44.1 9.5 1.9e-11 43.6 6.6 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF11 PF01345.13 gi|298675458|ref|YP_003727208.1| - 0.00035 20.5 14.3 0.03 14.3 0.4 3.9 4 0 0 4 4 4 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|298675458|ref|YP_003727208.1| - 0.0038 17.2 4.0 0.22 11.6 0.3 3.0 2 0 0 2 2 2 2 CARDB NPCBM_assoc PF10633.4 gi|298675458|ref|YP_003727208.1| - 0.057 13.4 1.2 9.7 6.3 0.1 2.9 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF116 PF01976.12 gi|298675459|ref|YP_003727209.1| - 4e-06 26.3 0.1 5.9e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF116 Sod_Cu PF00080.15 gi|298675460|ref|YP_003727210.1| - 0.045 13.8 0.0 0.13 12.4 0.0 1.7 1 1 0 1 1 1 0 Copper/zinc superoxide dismutase (SODC) DUF4402 PF14352.1 gi|298675460|ref|YP_003727210.1| - 0.12 12.8 6.6 0.18 12.2 0.2 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4402) CarboxypepD_reg PF13620.1 gi|298675460|ref|YP_003727210.1| - 0.2 11.7 6.2 2.4 8.2 0.1 3.1 4 0 0 4 4 4 0 Carboxypeptidase regulatory-like domain HTH_45 PF14947.1 gi|298675461|ref|YP_003727211.1| - 1.4e-24 85.7 0.9 1.6e-24 85.5 0.6 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|298675461|ref|YP_003727211.1| - 2.6e-05 23.8 0.1 3.3e-05 23.5 0.0 1.3 1 1 0 1 1 1 1 Transcription factor MotA, activation domain DUF2250 PF10007.4 gi|298675461|ref|YP_003727211.1| - 0.014 15.2 0.3 0.02 14.7 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|298675461|ref|YP_003727211.1| - 0.018 15.3 0.0 0.26 11.6 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HemN_C PF06969.11 gi|298675461|ref|YP_003727211.1| - 0.024 14.6 0.0 0.03 14.3 0.0 1.4 1 1 0 1 1 1 0 HemN C-terminal domain DUF4393 PF14337.1 gi|298675461|ref|YP_003727211.1| - 0.082 12.3 0.1 0.082 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) DUF4423 PF14394.1 gi|298675461|ref|YP_003727211.1| - 0.12 11.8 0.1 0.52 9.8 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) DARPP-32 PF05395.7 gi|298675462|ref|YP_003727212.1| - 0.28 11.3 0.0 0.28 11.3 0.0 2.2 1 1 1 2 2 2 0 Protein phosphatase inhibitor 1/DARPP-32 Pex14_N PF04695.8 gi|298675462|ref|YP_003727212.1| - 0.5 10.4 5.4 5.4 7.0 3.7 2.1 1 1 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF912 PF06024.7 gi|298675462|ref|YP_003727212.1| - 2.8 8.0 4.6 3.5 7.7 0.1 2.7 2 1 1 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) ABC2_membrane_3 PF12698.2 gi|298675462|ref|YP_003727212.1| - 5.4 5.9 6.0 9.6 5.1 4.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF11 PF01345.13 gi|298675463|ref|YP_003727213.1| - 9e-11 41.6 11.6 0.0084 16.1 0.1 4.6 4 0 0 4 4 4 3 Domain of unknown function DUF11 CDC48_2 PF02933.12 gi|298675463|ref|YP_003727213.1| - 2.2e-06 27.2 0.0 1.1 8.9 0.0 3.6 3 0 0 3 3 3 3 Cell division protein 48 (CDC48), domain 2 CtaG_Cox11 PF04442.9 gi|298675463|ref|YP_003727213.1| - 6.5e-06 26.0 0.0 0.79 9.5 0.0 3.5 3 0 0 3 3 3 2 Cytochrome c oxidase assembly protein CtaG/Cox11 DUF2808 PF10989.3 gi|298675463|ref|YP_003727213.1| - 1e-05 25.2 6.6 0.96 9.0 0.0 4.0 3 1 0 3 3 3 3 Protein of unknown function (DUF2808) Arrestin_C PF02752.17 gi|298675463|ref|YP_003727213.1| - 7.8e-05 22.7 0.5 6.4 6.8 0.0 4.2 3 1 0 3 3 3 1 Arrestin (or S-antigen), C-terminal domain Cohesin PF00963.13 gi|298675463|ref|YP_003727213.1| - 8.1e-05 22.5 10.9 1.4 8.7 0.0 4.6 3 1 0 3 3 3 2 Cohesin domain DUF4131 PF13567.1 gi|298675463|ref|YP_003727213.1| - 0.0018 17.7 0.0 13 5.1 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4131) Reeler PF02014.11 gi|298675463|ref|YP_003727213.1| - 0.0082 16.4 1.4 33 4.7 0.1 4.1 2 1 0 3 3 3 0 Reeler domain Alpha_adaptinC2 PF02883.15 gi|298675463|ref|YP_003727213.1| - 0.0083 16.4 2.1 37 4.6 0.0 3.6 3 0 0 3 3 3 0 Adaptin C-terminal domain MipZ PF09140.6 gi|298675463|ref|YP_003727213.1| - 0.014 14.4 0.0 11 4.9 0.0 3.0 3 0 0 3 3 3 0 ATPase MipZ WYL PF13280.1 gi|298675463|ref|YP_003727213.1| - 0.015 15.2 0.0 7.9 6.3 0.0 3.7 4 0 0 4 4 4 0 WYL domain Cupredoxin_1 PF13473.1 gi|298675463|ref|YP_003727213.1| - 0.019 14.8 0.4 0.93 9.4 0.1 3.7 2 1 1 3 3 3 0 Cupredoxin-like domain NPCBM_assoc PF10633.4 gi|298675463|ref|YP_003727213.1| - 0.02 14.9 10.7 37 4.4 0.7 6.7 6 1 1 7 7 7 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4307 PF14155.1 gi|298675463|ref|YP_003727213.1| - 0.049 13.4 8.6 0.73 9.6 0.0 4.5 4 2 0 4 4 4 0 Domain of unknown function (DUF4307) hGDE_N PF14699.1 gi|298675463|ref|YP_003727213.1| - 0.096 12.5 0.0 0.42 10.4 0.0 2.1 1 0 0 1 1 1 0 N-terminal domain from the human glycogen debranching enzyme Phospho_p8 PF10195.4 gi|298675463|ref|YP_003727213.1| - 0.13 12.1 0.9 89 3.0 0.0 3.3 3 0 0 3 3 3 0 DNA-binding nuclear phosphoprotein p8 EF-hand_7 PF13499.1 gi|298675464|ref|YP_003727214.1| - 0.024 14.7 10.6 1.2 9.3 0.0 5.0 5 0 0 5 5 5 0 EF-hand domain pair EF-hand_5 PF13202.1 gi|298675464|ref|YP_003727214.1| - 0.17 11.2 15.5 0.31 10.4 0.0 5.3 6 0 0 6 6 6 0 EF hand EF-hand_6 PF13405.1 gi|298675464|ref|YP_003727214.1| - 0.31 11.0 0.0 0.31 11.0 0.0 6.1 9 0 0 9 9 9 0 EF-hand domain EF-hand_1 PF00036.27 gi|298675464|ref|YP_003727214.1| - 0.5 9.8 0.0 0.5 9.8 0.0 6.3 7 0 0 7 7 7 0 EF hand EF-hand_8 PF13833.1 gi|298675464|ref|YP_003727214.1| - 3.5 7.3 13.1 21 4.8 0.4 4.9 6 0 0 6 6 6 0 EF-hand domain pair Pribosyltran PF00156.22 gi|298675465|ref|YP_003727215.1| - 1.7e-30 105.3 0.2 2.3e-30 104.8 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|298675465|ref|YP_003727215.1| - 8.5e-05 21.8 0.0 0.00013 21.2 0.0 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|298675465|ref|YP_003727215.1| - 0.031 13.5 0.0 0.064 12.5 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase Mur_ligase_C PF02875.16 gi|298675465|ref|YP_003727215.1| - 0.14 12.1 0.0 0.4 10.7 0.0 1.7 2 0 0 2 2 2 0 Mur ligase family, glutamate ligase domain Abhydrolase_5 PF12695.2 gi|298675466|ref|YP_003727216.1| - 2.8e-18 66.0 0.0 3.4e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|298675466|ref|YP_003727216.1| - 4.6e-12 45.6 0.0 5.4e-12 45.4 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|298675466|ref|YP_003727216.1| - 4.3e-11 43.1 0.0 7.8e-05 22.6 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|298675466|ref|YP_003727216.1| - 8.9e-07 28.8 0.0 0.00016 21.4 0.0 2.2 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.16 gi|298675466|ref|YP_003727216.1| - 9.2e-06 25.0 0.0 0.058 12.6 0.0 2.4 1 1 1 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|298675466|ref|YP_003727216.1| - 4.2e-05 23.2 0.2 0.18 11.3 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|298675466|ref|YP_003727216.1| - 0.0018 17.7 0.1 0.0077 15.6 0.0 1.8 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|298675466|ref|YP_003727216.1| - 0.0096 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase DUF1749 PF08538.5 gi|298675466|ref|YP_003727216.1| - 0.051 12.4 0.0 0.079 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1749) DUF3530 PF12048.3 gi|298675466|ref|YP_003727216.1| - 0.058 12.3 0.0 0.18 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3530) Abhydrolase_2 PF02230.11 gi|298675466|ref|YP_003727216.1| - 0.074 12.4 0.0 1.6 8.0 0.0 2.1 1 1 0 1 1 1 0 Phospholipase/Carboxylesterase Response_reg PF00072.19 gi|298675467|ref|YP_003727217.1| - 4.5e-24 84.6 0.1 1.1e-23 83.3 0.1 1.7 2 0 0 2 2 2 1 Response regulator receiver domain ATC_hydrolase PF14196.1 gi|298675467|ref|YP_003727217.1| - 0.002 18.5 1.5 0.0041 17.5 1.0 1.8 1 1 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase Scm3 PF10384.4 gi|298675467|ref|YP_003727217.1| - 0.17 11.4 0.9 0.39 10.2 0.6 1.6 1 0 0 1 1 1 0 Centromere protein Scm3 DUF3404 PF11884.3 gi|298675468|ref|YP_003727218.1| - 0.058 12.2 0.3 0.063 12.1 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3404) DUF2839 PF10999.3 gi|298675468|ref|YP_003727218.1| - 0.29 11.1 1.7 0.33 11.0 1.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2839) OrfB_IS605 PF01385.14 gi|298675469|ref|YP_003727219.1| - 2.4e-43 148.1 5.3 2.4e-43 148.1 3.7 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675469|ref|YP_003727219.1| - 3.2e-24 84.3 0.3 6.8e-24 83.3 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675469|ref|YP_003727219.1| - 3.2e-21 74.3 2.0 7.7e-21 73.1 1.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Flagellin_D3 PF08884.6 gi|298675469|ref|YP_003727219.1| - 0.018 15.1 0.1 0.034 14.3 0.1 1.4 1 0 0 1 1 1 0 Flagellin D3 domain HypA PF01155.14 gi|298675469|ref|YP_003727219.1| - 0.1 12.2 0.3 0.31 10.7 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Occludin_ELL PF07303.8 gi|298675469|ref|YP_003727219.1| - 0.97 10.2 8.0 0.34 11.6 2.1 2.3 2 0 0 2 2 2 0 Occludin homology domain M_domain PF12938.2 gi|298675469|ref|YP_003727219.1| - 1.2 8.8 7.3 0.28 10.9 1.9 1.9 2 0 0 2 2 2 0 M domain of GW182 Phage_GP20 PF06810.6 gi|298675469|ref|YP_003727219.1| - 2.8 7.3 10.3 0.11 11.9 0.7 2.7 3 0 0 3 3 3 0 Phage minor structural protein GP20 Rubredoxin PF00301.15 gi|298675469|ref|YP_003727219.1| - 4.2 7.3 8.6 55 3.7 6.0 2.5 1 1 0 1 1 1 0 Rubredoxin SNase PF00565.12 gi|298675470|ref|YP_003727220.1| - 3.5e-26 91.5 0.0 4.6e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue DUF1699 PF08004.6 gi|298675471|ref|YP_003727221.1| - 1.6e-60 202.3 0.9 1.8e-60 202.1 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) DUF2080 PF09853.4 gi|298675472|ref|YP_003727222.1| - 0.0013 18.4 0.0 0.06 13.0 0.0 2.1 1 1 1 2 2 2 2 Putative transposon-encoded protein (DUF2080) MgtE PF01769.11 gi|298675473|ref|YP_003727223.1| - 1.4e-19 70.6 11.2 1.4e-19 70.6 7.8 1.5 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.11 gi|298675474|ref|YP_003727224.1| - 2e-17 63.7 7.1 3.4e-17 62.9 4.9 1.3 1 0 0 1 1 1 1 Divalent cation transporter Chitin_synth_2 PF03142.10 gi|298675474|ref|YP_003727224.1| - 3.3 5.9 5.5 4.7 5.4 3.8 1.1 1 0 0 1 1 1 0 Chitin synthase TrkA_C PF02080.16 gi|298675475|ref|YP_003727225.1| - 2.1e-30 104.1 0.0 4.7e-15 54.9 0.0 2.6 2 1 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|298675475|ref|YP_003727225.1| - 6.5e-14 52.1 12.4 3.1e-07 30.7 5.3 2.4 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|298675475|ref|YP_003727225.1| - 0.0052 15.9 6.3 0.02 14.0 0.1 2.5 2 1 1 3 3 3 2 Protein of unknown function DUF47 Rib_5-P_isom_A PF06026.9 gi|298675476|ref|YP_003727226.1| - 6e-61 204.7 0.2 8.9e-61 204.1 0.2 1.2 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|298675476|ref|YP_003727226.1| - 2.3e-05 24.0 0.3 0.00072 19.2 0.0 2.3 2 0 0 2 2 2 1 DeoR C terminal sensor domain RNA_pol_Rpb2_7 PF04560.15 gi|298675476|ref|YP_003727226.1| - 0.014 15.6 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb2, domain 7 tRNA-synt_2 PF00152.15 gi|298675477|ref|YP_003727227.1| - 1.3e-95 320.0 0.4 1.7e-95 319.6 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|298675477|ref|YP_003727227.1| - 4.9e-16 58.3 0.1 8.2e-16 57.6 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|298675477|ref|YP_003727227.1| - 6.7e-05 22.2 1.1 0.0062 15.7 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|298675477|ref|YP_003727227.1| - 0.091 12.3 0.1 6.3 6.3 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF2000 PF09391.5 gi|298675477|ref|YP_003727227.1| - 0.16 11.6 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2000) Asparaginase PF00710.15 gi|298675478|ref|YP_003727228.1| - 8.3e-92 307.3 0.1 1e-91 307.0 0.1 1.1 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|298675478|ref|YP_003727228.1| - 5.3e-05 22.6 0.0 0.061 12.6 0.0 2.2 1 1 0 2 2 2 2 Periplasmic binding protein domain Asp_Glu_race PF01177.17 gi|298675478|ref|YP_003727228.1| - 0.035 14.0 0.6 0.25 11.2 0.2 2.3 1 1 1 2 2 2 0 Asp/Glu/Hydantoin racemase zf-primase PF09329.6 gi|298675478|ref|YP_003727228.1| - 0.098 12.2 0.3 0.22 11.1 0.2 1.5 1 0 0 1 1 1 0 Primase zinc finger Lyase_1 PF00206.15 gi|298675479|ref|YP_003727229.1| - 3.7e-61 207.0 0.0 7.2e-61 206.0 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|298675479|ref|YP_003727229.1| - 1.9e-11 43.8 0.1 7.7e-11 41.9 0.0 2.1 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal PAS_9 PF13426.1 gi|298675480|ref|YP_003727230.1| - 8e-42 141.8 0.6 2.4e-11 43.9 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|298675480|ref|YP_003727230.1| - 8.3e-42 141.5 0.0 4.3e-12 45.8 0.0 4.7 5 0 0 5 5 5 4 PAS fold HATPase_c PF02518.21 gi|298675480|ref|YP_003727230.1| - 1.3e-32 111.7 0.1 1.5e-31 108.3 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|298675480|ref|YP_003727230.1| - 1.6e-29 101.8 0.0 9.6e-16 57.6 0.1 4.8 4 1 0 4 4 4 4 PAS fold PAS_4 PF08448.5 gi|298675480|ref|YP_003727230.1| - 2.3e-28 98.4 0.0 3.1e-07 30.3 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|298675480|ref|YP_003727230.1| - 6.4e-24 82.9 0.3 2.6e-07 30.2 0.0 3.7 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|298675480|ref|YP_003727230.1| - 1.3e-16 60.2 0.9 2.9e-16 59.1 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|298675480|ref|YP_003727230.1| - 4e-09 36.6 0.1 8.3e-05 22.8 0.1 3.1 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|298675480|ref|YP_003727230.1| - 3.3e-08 33.5 5.6 0.034 14.1 0.0 5.4 4 2 0 4 4 4 3 PAS fold HATPase_c_5 PF14501.1 gi|298675480|ref|YP_003727230.1| - 0.0014 18.3 0.0 0.0058 16.3 0.0 2.1 1 0 0 1 1 1 1 GHKL domain MEKHLA PF08670.6 gi|298675480|ref|YP_003727230.1| - 0.0019 17.7 0.0 2.6 7.5 0.0 2.6 2 0 0 2 2 2 2 MEKHLA domain DUF4375 PF14300.1 gi|298675480|ref|YP_003727230.1| - 0.071 13.1 1.3 1.2 9.1 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) HATPase_c_2 PF13581.1 gi|298675480|ref|YP_003727230.1| - 0.084 12.6 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Fcf2 PF08698.6 gi|298675480|ref|YP_003727230.1| - 5.6 7.0 8.2 13 5.9 0.0 3.6 4 1 1 5 5 5 0 Fcf2 pre-rRNA processing HATPase_c PF02518.21 gi|298675481|ref|YP_003727231.1| - 2.8e-22 78.5 0.1 7.2e-22 77.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|298675481|ref|YP_003727231.1| - 8.8e-06 26.0 0.2 2.6e-05 24.5 0.1 1.9 1 1 0 1 1 1 1 PAS domain PAS PF00989.19 gi|298675481|ref|YP_003727231.1| - 2.1e-05 24.2 0.0 4.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|298675481|ref|YP_003727231.1| - 0.00011 21.8 1.8 0.00025 20.6 0.0 2.4 2 1 0 2 2 2 1 GHKL domain HisKA PF00512.20 gi|298675481|ref|YP_003727231.1| - 0.0039 17.1 0.1 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|298675481|ref|YP_003727231.1| - 0.013 15.1 0.1 0.038 13.6 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|298675481|ref|YP_003727231.1| - 0.02 14.7 0.0 0.064 13.1 0.0 1.9 1 0 0 1 1 1 0 PAS domain HATPase_c_2 PF13581.1 gi|298675481|ref|YP_003727231.1| - 0.028 14.2 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Histone PF00125.19 gi|298675481|ref|YP_003727231.1| - 0.036 14.1 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Aminotran_1_2 PF00155.16 gi|298675482|ref|YP_003727232.1| - 3.5e-61 207.1 0.0 4e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|298675482|ref|YP_003727232.1| - 0.00033 19.0 0.0 0.00058 18.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|298675482|ref|YP_003727232.1| - 0.073 11.7 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V Alliinase_C PF04864.8 gi|298675482|ref|YP_003727232.1| - 0.084 11.5 0.0 0.69 8.5 0.0 2.1 2 0 0 2 2 2 0 Allinase Chorismate_synt PF01264.16 gi|298675483|ref|YP_003727233.1| - 2.9e-149 496.2 1.1 3.3e-149 496.0 0.8 1.0 1 0 0 1 1 1 1 Chorismate synthase Cation_efflux PF01545.16 gi|298675484|ref|YP_003727234.1| - 4e-69 232.8 3.2 4.5e-69 232.6 2.2 1.0 1 0 0 1 1 1 1 Cation efflux family Toxin_48 PF15528.1 gi|298675485|ref|YP_003727235.1| - 0.077 12.8 1.2 0.093 12.6 0.3 1.5 2 0 0 2 2 2 0 Putative toxin 48 KapB PF08810.5 gi|298675485|ref|YP_003727235.1| - 0.083 12.9 0.2 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Kinase associated protein B Glu_cys_ligase PF04262.9 gi|298675485|ref|YP_003727235.1| - 0.13 10.7 0.7 0.19 10.1 0.5 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase PTS_IIB PF02302.12 gi|298675485|ref|YP_003727235.1| - 0.24 11.9 2.3 0.63 10.5 0.5 2.4 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit CbiA PF01656.18 gi|298675486|ref|YP_003727236.1| - 2.2e-30 105.5 0.1 2.8e-30 105.1 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|298675486|ref|YP_003727236.1| - 1.6e-08 33.9 0.2 3.9e-08 32.6 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|298675486|ref|YP_003727236.1| - 1.6e-06 27.5 0.3 0.0033 16.6 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|298675486|ref|YP_003727236.1| - 7.8e-06 25.9 0.0 2.3e-05 24.3 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|298675486|ref|YP_003727236.1| - 3.3e-05 24.6 0.3 7.2e-05 23.6 0.2 1.9 1 1 1 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|298675486|ref|YP_003727236.1| - 4.1e-05 23.8 0.0 7.7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|298675486|ref|YP_003727236.1| - 9.9e-05 22.0 1.1 0.00077 19.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298675486|ref|YP_003727236.1| - 0.00029 20.8 0.0 0.00063 19.7 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain MobB PF03205.9 gi|298675486|ref|YP_003727236.1| - 0.00046 19.9 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|298675486|ref|YP_003727236.1| - 0.00064 19.4 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 NTPase AAA_24 PF13479.1 gi|298675486|ref|YP_003727236.1| - 0.00088 18.9 1.0 0.002 17.7 0.1 2.1 3 1 0 3 3 2 1 AAA domain DUF87 PF01935.12 gi|298675486|ref|YP_003727236.1| - 0.0013 18.6 0.0 0.0027 17.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF87 NACHT PF05729.7 gi|298675486|ref|YP_003727236.1| - 0.0018 17.9 0.2 0.0033 17.1 0.1 1.3 1 0 0 1 1 1 1 NACHT domain SRP54 PF00448.17 gi|298675486|ref|YP_003727236.1| - 0.0021 17.5 0.4 0.0036 16.7 0.3 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain ABC_tran PF00005.22 gi|298675486|ref|YP_003727236.1| - 0.0033 17.7 0.0 0.0064 16.7 0.0 1.7 1 1 0 1 1 1 1 ABC transporter YhjQ PF06564.7 gi|298675486|ref|YP_003727236.1| - 0.0056 16.0 0.2 0.045 13.1 0.2 1.9 2 0 0 2 2 2 1 YhjQ protein KTI12 PF08433.5 gi|298675486|ref|YP_003727236.1| - 0.0089 15.2 0.0 0.015 14.5 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|298675486|ref|YP_003727236.1| - 0.01 15.7 0.0 0.057 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|298675486|ref|YP_003727236.1| - 0.011 15.3 0.1 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_5 PF07728.9 gi|298675486|ref|YP_003727236.1| - 0.012 15.3 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|298675486|ref|YP_003727236.1| - 0.013 15.6 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|298675486|ref|YP_003727236.1| - 0.015 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|298675486|ref|YP_003727236.1| - 0.017 14.5 0.0 0.031 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|298675486|ref|YP_003727236.1| - 0.02 14.4 1.8 0.052 13.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|298675486|ref|YP_003727236.1| - 0.022 14.2 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ArgK PF03308.11 gi|298675486|ref|YP_003727236.1| - 0.023 13.4 0.1 0.042 12.6 0.1 1.5 1 0 0 1 1 1 0 ArgK protein AAA_2 PF07724.9 gi|298675486|ref|YP_003727236.1| - 0.038 13.8 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|298675486|ref|YP_003727236.1| - 0.057 13.1 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain MipZ PF09140.6 gi|298675486|ref|YP_003727236.1| - 0.067 12.2 0.2 0.14 11.2 0.1 1.5 1 0 0 1 1 1 0 ATPase MipZ NB-ARC PF00931.17 gi|298675486|ref|YP_003727236.1| - 0.072 11.9 0.2 0.13 11.1 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF258 PF03193.11 gi|298675486|ref|YP_003727236.1| - 0.082 12.0 0.0 0.79 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Thymidylate_kin PF02223.12 gi|298675486|ref|YP_003727236.1| - 0.13 11.6 0.0 0.32 10.3 0.0 1.7 2 0 0 2 2 1 0 Thymidylate kinase AAA_29 PF13555.1 gi|298675486|ref|YP_003727236.1| - 0.19 11.2 1.5 0.36 10.3 0.1 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|298675486|ref|YP_003727236.1| - 0.19 11.1 0.7 0.4 10.1 0.5 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NIF3 PF01784.13 gi|298675488|ref|YP_003727238.1| - 3.5e-54 183.9 0.0 4.2e-54 183.6 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Prenyltransf PF01255.14 gi|298675491|ref|YP_003727241.1| - 4.5e-41 140.4 0.0 5.3e-41 140.1 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CARDB PF07705.6 gi|298675492|ref|YP_003727242.1| - 1.7e-07 31.2 12.5 0.0054 16.7 0.9 3.7 3 0 0 3 3 3 3 CARDB DUF11 PF01345.13 gi|298675492|ref|YP_003727242.1| - 3.6e-07 30.1 18.4 4.4e-07 29.8 0.5 4.1 5 0 0 5 5 5 2 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|298675492|ref|YP_003727242.1| - 6.8e-07 28.6 9.1 0.00053 19.2 1.7 3.3 2 1 1 3 3 3 3 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.5 gi|298675492|ref|YP_003727242.1| - 0.98 8.9 18.0 1 8.9 0.7 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF2393) DUF11 PF01345.13 gi|298675493|ref|YP_003727243.1| - 9.5e-06 25.5 5.6 1.3e-05 25.1 0.4 3.3 4 0 0 4 4 4 1 Domain of unknown function DUF11 Cupredoxin_1 PF13473.1 gi|298675493|ref|YP_003727243.1| - 0.039 13.8 4.8 2.2 8.2 0.1 3.1 2 1 1 3 3 3 0 Cupredoxin-like domain MMR_HSR1 PF01926.18 gi|298675494|ref|YP_003727244.1| - 6e-18 64.8 0.0 9.7e-18 64.2 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|298675494|ref|YP_003727244.1| - 5.3e-12 45.2 0.7 1.1e-10 41.0 0.5 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|298675494|ref|YP_003727244.1| - 5.2e-05 22.7 0.2 0.0011 18.4 0.1 2.2 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|298675494|ref|YP_003727244.1| - 0.00079 19.2 0.0 0.0018 18.1 0.0 1.5 1 1 0 1 1 1 1 Dynamin family DUF258 PF03193.11 gi|298675494|ref|YP_003727244.1| - 0.0037 16.4 0.1 0.019 14.1 0.1 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|298675494|ref|YP_003727244.1| - 0.0051 16.5 0.3 0.028 14.1 0.1 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|298675494|ref|YP_003727244.1| - 0.0083 16.9 0.0 0.012 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Septin PF00735.13 gi|298675494|ref|YP_003727244.1| - 0.011 14.8 0.1 0.037 13.0 0.0 1.8 1 1 1 2 2 2 0 Septin Miro PF08477.8 gi|298675494|ref|YP_003727244.1| - 0.038 14.4 0.2 0.067 13.6 0.2 1.7 1 1 0 1 1 1 0 Miro-like protein AAA_18 PF13238.1 gi|298675494|ref|YP_003727244.1| - 0.07 13.4 0.2 0.23 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.16 gi|298675495|ref|YP_003727245.1| - 5.3e-19 68.9 0.1 6.4e-19 68.7 0.0 1.0 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298675495|ref|YP_003727245.1| - 6.5e-07 29.3 0.0 1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298675495|ref|YP_003727245.1| - 0.0021 18.2 0.0 0.0028 17.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain AIG2 PF06094.7 gi|298675496|ref|YP_003727246.1| - 3.6e-14 53.0 0.0 4.4e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 AIG2-like family DAO PF01266.19 gi|298675497|ref|YP_003727247.1| - 2.6e-11 43.0 0.3 7.2e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|298675497|ref|YP_003727247.1| - 2.9e-11 43.0 0.4 1.6e-08 34.0 0.1 2.9 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|298675497|ref|YP_003727247.1| - 4.3e-10 39.2 0.1 5.9e-09 35.4 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|298675497|ref|YP_003727247.1| - 1e-07 32.0 0.0 2.1e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|298675497|ref|YP_003727247.1| - 1.7e-07 31.1 0.0 4.6e-07 29.7 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|298675497|ref|YP_003727247.1| - 1.7e-07 30.0 0.1 3.7e-07 28.9 0.1 1.5 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|298675497|ref|YP_003727247.1| - 2e-07 30.2 0.0 3.5e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|298675497|ref|YP_003727247.1| - 3.3e-07 30.6 0.0 0.0034 17.7 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|298675497|ref|YP_003727247.1| - 7e-07 28.4 0.0 0.0002 20.3 0.0 2.2 2 1 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|298675497|ref|YP_003727247.1| - 9.3e-07 28.1 0.0 2.1e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.9 gi|298675497|ref|YP_003727247.1| - 1.6e-06 27.0 0.0 0.011 14.4 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|298675497|ref|YP_003727247.1| - 2.3e-05 23.4 0.3 4.3e-05 22.5 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|298675497|ref|YP_003727247.1| - 0.00045 20.3 0.1 0.0018 18.3 0.0 2.0 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|298675497|ref|YP_003727247.1| - 0.00061 19.6 0.0 1.5 8.6 0.0 3.1 3 0 0 3 3 3 2 ThiF family GDI PF00996.13 gi|298675497|ref|YP_003727247.1| - 0.0082 14.4 0.0 0.012 13.9 0.0 1.2 1 0 0 1 1 1 1 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|298675497|ref|YP_003727247.1| - 0.0092 15.6 0.0 0.03 13.9 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|298675497|ref|YP_003727247.1| - 0.0097 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|298675497|ref|YP_003727247.1| - 0.071 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|298675497|ref|YP_003727247.1| - 0.16 11.7 0.0 1.6 8.4 0.0 2.2 1 1 0 1 1 1 0 FAD-NAD(P)-binding SnoaL_4 PF13577.1 gi|298675498|ref|YP_003727248.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like domain DUF1732 PF08340.6 gi|298675498|ref|YP_003727248.1| - 0.16 11.7 1.6 2.2 8.1 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1732) Orn_Arg_deC_N PF02784.11 gi|298675499|ref|YP_003727249.1| - 7.7e-60 202.1 0.0 2.9e-59 200.3 0.0 1.7 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|298675499|ref|YP_003727249.1| - 7.3e-22 77.2 0.0 1e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|298675499|ref|YP_003727249.1| - 1.2e-11 44.5 0.0 2.7e-11 43.4 0.0 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain Ank_2 PF12796.2 gi|298675499|ref|YP_003727249.1| - 0.12 12.7 0.0 4.2 7.7 0.0 2.6 2 1 0 2 2 2 0 Ankyrin repeats (3 copies) FKBP_C PF00254.23 gi|298675500|ref|YP_003727250.1| - 3.6e-14 52.5 1.4 6.7e-13 48.4 0.2 2.4 1 1 1 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase MCH PF02289.11 gi|298675501|ref|YP_003727251.1| - 1.5e-150 500.5 2.2 1.7e-150 500.3 1.5 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF2124 PF09897.4 gi|298675502|ref|YP_003727252.1| - 1.2e-49 167.7 0.0 1.4e-49 167.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) CMD PF02627.15 gi|298675503|ref|YP_003727253.1| - 6.4e-12 45.1 0.2 1e-11 44.4 0.0 1.4 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family CwfJ_C_1 PF04677.10 gi|298675503|ref|YP_003727253.1| - 0.026 14.1 0.1 0.055 13.1 0.0 1.7 1 1 1 2 2 2 0 Protein similar to CwfJ C-terminus 1 MreB_Mbl PF06723.8 gi|298675503|ref|YP_003727253.1| - 0.052 12.1 0.0 0.06 11.9 0.0 1.1 1 0 0 1 1 1 0 MreB/Mbl protein Met_10 PF02475.11 gi|298675504|ref|YP_003727254.1| - 1.5e-62 210.7 0.0 2.2e-62 210.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|298675504|ref|YP_003727254.1| - 6.7e-06 25.7 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|298675504|ref|YP_003727254.1| - 4.7e-05 23.9 0.0 8.4e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298675504|ref|YP_003727254.1| - 0.00014 21.8 0.0 0.00021 21.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.10 gi|298675504|ref|YP_003727254.1| - 0.00065 18.8 0.0 0.00098 18.2 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G MTS PF05175.9 gi|298675504|ref|YP_003727254.1| - 0.00076 18.8 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|298675504|ref|YP_003727254.1| - 0.018 14.1 0.0 0.056 12.4 0.0 1.8 1 1 1 2 2 2 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|298675504|ref|YP_003727254.1| - 0.07 11.8 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase V4R PF02830.13 gi|298675505|ref|YP_003727255.1| - 1.3e-12 47.3 1.8 1.6e-12 47.0 1.2 1.1 1 0 0 1 1 1 1 V4R domain DUF2110 PF09883.4 gi|298675506|ref|YP_003727256.1| - 1.1e-75 254.1 0.3 1.2e-75 253.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) AAA_13 PF13166.1 gi|298675507|ref|YP_003727257.1| - 0.00031 19.3 9.7 0.00037 19.1 6.7 1.0 1 0 0 1 1 1 1 AAA domain HTH_27 PF13463.1 gi|298675507|ref|YP_003727257.1| - 0.00045 20.4 0.0 0.00084 19.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|298675507|ref|YP_003727257.1| - 0.0021 17.8 0.1 0.0033 17.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix EURL PF06937.6 gi|298675507|ref|YP_003727257.1| - 0.0025 17.2 1.3 0.0029 17.0 0.9 1.3 1 0 0 1 1 1 1 EURL protein Filament PF00038.16 gi|298675507|ref|YP_003727257.1| - 0.005 16.3 4.7 0.0067 15.9 3.2 1.3 1 0 0 1 1 1 1 Intermediate filament protein Tropomyosin_1 PF12718.2 gi|298675507|ref|YP_003727257.1| - 0.017 14.9 4.0 0.029 14.2 2.8 1.3 1 0 0 1 1 1 0 Tropomyosin like DUF2250 PF10007.4 gi|298675507|ref|YP_003727257.1| - 0.022 14.6 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Med9 PF07544.8 gi|298675507|ref|YP_003727257.1| - 0.026 14.2 2.2 0.051 13.2 1.5 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 MarR PF01047.17 gi|298675507|ref|YP_003727257.1| - 0.046 13.4 0.3 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 MarR family APG6 PF04111.7 gi|298675507|ref|YP_003727257.1| - 0.053 12.5 6.0 0.072 12.1 4.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Med2 PF11214.3 gi|298675507|ref|YP_003727257.1| - 0.064 13.2 0.5 0.064 13.2 0.4 2.1 2 0 0 2 2 2 0 Mediator complex subunit 2 CENP-F_leu_zip PF10473.4 gi|298675507|ref|YP_003727257.1| - 0.14 11.9 8.3 0.34 10.7 5.8 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Hormone_1 PF00103.15 gi|298675507|ref|YP_003727257.1| - 0.24 10.6 3.4 1.6 8.0 2.1 2.3 1 1 0 1 1 1 0 Somatotropin hormone family Spc7 PF08317.6 gi|298675507|ref|YP_003727257.1| - 0.33 9.5 9.6 0.62 8.6 6.6 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein IncA PF04156.9 gi|298675507|ref|YP_003727257.1| - 0.51 9.9 5.4 0.81 9.2 3.7 1.3 1 0 0 1 1 1 0 IncA protein DUF2408 PF10303.4 gi|298675507|ref|YP_003727257.1| - 0.64 10.1 5.7 0.34 11.0 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) NPV_P10 PF05531.7 gi|298675507|ref|YP_003727257.1| - 1 9.6 8.6 3.1 8.1 1.3 2.8 2 1 2 4 4 3 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|298675507|ref|YP_003727257.1| - 1.3 8.8 4.4 2.6 7.8 2.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) LUC7 PF03194.10 gi|298675507|ref|YP_003727257.1| - 1.8 8.0 5.8 2.1 7.7 1.6 2.0 1 1 1 2 2 2 0 LUC7 N_terminus TRM PF02005.11 gi|298675508|ref|YP_003727258.1| - 1.5e-106 356.5 0.0 1.7e-106 356.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase HTH_6 PF01418.12 gi|298675508|ref|YP_003727258.1| - 0.05 13.3 0.0 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family zf-ribbon_3 PF13248.1 gi|298675508|ref|YP_003727258.1| - 3.4 7.0 5.5 0.76 9.0 1.4 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Cupredoxin_1 PF13473.1 gi|298675509|ref|YP_003727259.1| - 4.2e-08 33.0 0.0 6.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|298675509|ref|YP_003727259.1| - 0.00026 21.1 0.1 0.0084 16.3 0.1 2.2 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Herpes_LMP1 PF05297.6 gi|298675509|ref|YP_003727259.1| - 0.75 8.6 2.6 0.89 8.4 1.8 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Lactamase_B_2 PF12706.2 gi|298675510|ref|YP_003727260.1| - 7.3e-09 35.4 2.1 1.4e-08 34.5 1.4 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298675510|ref|YP_003727260.1| - 0.00022 20.9 2.8 0.023 14.3 2.6 2.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|298675510|ref|YP_003727260.1| - 0.00084 19.0 0.0 0.0021 17.7 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain ABM PF03992.11 gi|298675510|ref|YP_003727260.1| - 0.12 12.4 0.1 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase DUF4010 PF13194.1 gi|298675511|ref|YP_003727261.1| - 3.1e-44 150.7 19.1 3.1e-44 150.7 13.3 2.9 3 1 1 4 4 4 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|298675511|ref|YP_003727261.1| - 5.2e-15 55.4 4.9 5.2e-15 55.4 3.4 3.3 3 1 1 4 4 4 1 MgtC family Polyoma_coat2 PF00761.15 gi|298675511|ref|YP_003727261.1| - 3 7.2 6.3 5.6 6.3 4.4 1.5 1 0 0 1 1 1 0 Polyomavirus coat protein Metallophos_2 PF12850.2 gi|298675512|ref|YP_003727262.1| - 2.9e-20 72.6 0.0 4.5e-20 72.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|298675512|ref|YP_003727262.1| - 1.3e-19 70.3 0.1 2e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|298675512|ref|YP_003727262.1| - 2e-09 36.9 0.1 2.8e-06 26.6 0.1 2.4 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily PP2C_2 PF13672.1 gi|298675513|ref|YP_003727263.1| - 4.8e-17 62.0 0.3 6.3e-17 61.6 0.2 1.1 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|298675513|ref|YP_003727263.1| - 1.7e-16 60.4 1.0 3.1e-14 53.0 0.7 2.0 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|298675513|ref|YP_003727263.1| - 3.9e-08 33.2 0.4 5.8e-08 32.6 0.3 1.3 1 0 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DUF1236 PF06823.7 gi|298675514|ref|YP_003727264.1| - 0.0021 17.7 0.1 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1236) PBP-Tp47_c PF14888.1 gi|298675514|ref|YP_003727264.1| - 0.03 13.9 0.0 0.035 13.7 0.0 1.1 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain C DUF1524 PF07510.6 gi|298675514|ref|YP_003727264.1| - 0.053 13.3 0.0 0.063 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1524) OrfB_IS605 PF01385.14 gi|298675515|ref|YP_003727265.1| - 1.8e-55 187.8 6.4 2.3e-55 187.4 4.4 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675515|ref|YP_003727265.1| - 1.5e-11 43.7 0.0 3.2e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298675515|ref|YP_003727265.1| - 0.1 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) Methyltrn_RNA_2 PF04013.7 gi|298675516|ref|YP_003727266.1| - 3e-68 229.3 0.0 3.5e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SAMP PF05924.6 gi|298675516|ref|YP_003727266.1| - 0.14 11.3 0.2 0.29 10.3 0.1 1.5 1 0 0 1 1 1 0 SAMP Motif THUMP PF02926.12 gi|298675517|ref|YP_003727267.1| - 1.4e-09 37.9 0.3 6.3e-09 35.8 0.0 2.3 3 0 0 3 3 3 1 THUMP domain TruB_N PF01509.13 gi|298675517|ref|YP_003727267.1| - 0.04 14.0 0.1 0.94 9.6 0.1 2.4 1 1 0 1 1 1 0 TruB family pseudouridylate synthase (N terminal domain) DUF4494 PF14902.1 gi|298675517|ref|YP_003727267.1| - 0.068 12.7 0.7 0.12 11.9 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4494) ATP-cone PF03477.11 gi|298675517|ref|YP_003727267.1| - 0.58 10.6 3.7 10 6.6 0.2 3.2 3 1 1 4 4 4 0 ATP cone domain Ribosomal_L21e PF01157.13 gi|298675518|ref|YP_003727268.1| - 5.2e-28 96.7 0.1 5.8e-28 96.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|298675519|ref|YP_003727269.1| - 2.6e-15 56.4 6.5 3.3e-15 56.1 4.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 FliG_M PF14841.1 gi|298675519|ref|YP_003727269.1| - 0.01 15.8 0.2 0.01 15.8 0.1 2.5 3 1 1 4 4 4 0 FliG middle domain Cbl_N PF02262.11 gi|298675519|ref|YP_003727269.1| - 0.037 13.7 0.4 0.12 12.1 0.0 1.9 1 1 1 2 2 2 0 CBL proto-oncogene N-terminal domain 1 EF-hand_8 PF13833.1 gi|298675519|ref|YP_003727269.1| - 0.068 12.7 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 EF-hand domain pair DUF3141 PF11339.3 gi|298675519|ref|YP_003727269.1| - 0.15 10.3 0.2 0.16 10.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) VIT1 PF01988.14 gi|298675519|ref|YP_003727269.1| - 0.15 11.5 2.2 0.19 11.1 1.5 1.2 1 0 0 1 1 1 0 VIT family DUF4317 PF14199.1 gi|298675519|ref|YP_003727269.1| - 0.17 10.6 7.1 0.28 9.9 0.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4317) DUF1319 PF07028.6 gi|298675519|ref|YP_003727269.1| - 0.26 11.5 3.8 0.3 11.2 2.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) dsDNA_bind PF01984.15 gi|298675519|ref|YP_003727269.1| - 0.95 9.4 4.7 2.6 8.0 0.7 2.2 1 1 0 2 2 2 0 Double-stranded DNA-binding domain FumaraseC_C PF10415.4 gi|298675519|ref|YP_003727269.1| - 0.96 9.5 3.2 1.4 9.0 0.0 2.6 2 1 1 3 3 3 0 Fumarase C C-terminus DUF655 PF04919.7 gi|298675520|ref|YP_003727270.1| - 1.2e-70 236.9 0.1 1.3e-70 236.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|298675520|ref|YP_003727270.1| - 0.0075 16.2 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|298675520|ref|YP_003727270.1| - 0.019 14.9 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif PAS_9 PF13426.1 gi|298675521|ref|YP_003727271.1| - 2.6e-11 43.7 0.0 3.4e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|298675521|ref|YP_003727271.1| - 1.9e-06 27.6 0.0 5.3e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|298675521|ref|YP_003727271.1| - 1e-05 25.2 0.0 1.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|298675521|ref|YP_003727271.1| - 2.9e-05 24.0 0.0 4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|298675521|ref|YP_003727271.1| - 0.00071 19.5 0.0 0.00092 19.2 0.0 1.1 1 0 0 1 1 1 1 PAS fold PAS_11 PF14598.1 gi|298675521|ref|YP_003727271.1| - 0.0059 16.5 0.0 0.0092 15.9 0.0 1.3 1 1 0 1 1 1 1 PAS domain Terminase_2 PF03592.11 gi|298675521|ref|YP_003727271.1| - 0.02 15.2 0.1 0.031 14.5 0.1 1.2 1 0 0 1 1 1 0 Terminase small subunit MCR_beta_N PF02783.10 gi|298675521|ref|YP_003727271.1| - 0.045 13.2 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF3877 PF12993.2 gi|298675521|ref|YP_003727271.1| - 0.078 12.5 0.1 0.14 11.6 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3877) PRANC PF09372.5 gi|298675521|ref|YP_003727271.1| - 0.21 11.5 3.3 0.38 10.7 2.3 1.6 1 1 0 1 1 1 0 PRANC domain OrfB_Zn_ribbon PF07282.6 gi|298675522|ref|YP_003727272.1| - 3.4e-25 87.4 2.3 1.3e-24 85.6 0.7 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675522|ref|YP_003727272.1| - 2.1e-16 60.0 1.9 3.3e-16 59.3 1.0 1.5 1 1 0 1 1 1 1 Probable transposase Tnp_zf-ribbon_2 PF13842.1 gi|298675522|ref|YP_003727272.1| - 0.0051 17.1 5.4 0.011 16.0 3.7 1.6 1 0 0 1 1 1 1 DDE_Tnp_1-like zinc-ribbon DUF2578 PF10843.3 gi|298675522|ref|YP_003727272.1| - 0.016 14.8 0.6 0.035 13.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2578) HTH_OrfB_IS605 PF12323.3 gi|298675522|ref|YP_003727272.1| - 0.06 12.6 0.1 0.44 9.9 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DNA_RNApol_7kD PF03604.8 gi|298675522|ref|YP_003727272.1| - 0.12 11.8 6.5 0.43 10.1 4.5 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|298675522|ref|YP_003727272.1| - 0.14 11.8 1.9 2.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|298675522|ref|YP_003727272.1| - 0.27 10.6 1.4 5.5 6.3 1.3 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|298675522|ref|YP_003727272.1| - 2.4 8.0 6.8 5.6 6.8 4.7 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|298675522|ref|YP_003727272.1| - 3.3 7.5 8.7 9.6 6.0 1.9 2.8 1 1 1 2 2 2 0 Ribosomal protein L37e RrnaAD PF00398.15 gi|298675523|ref|YP_003727273.1| - 1.3e-61 207.9 0.0 1.7e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|298675523|ref|YP_003727273.1| - 7.8e-11 42.0 0.0 1.1e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298675523|ref|YP_003727273.1| - 8.7e-08 31.8 0.2 1.8e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675523|ref|YP_003727273.1| - 1.1e-06 29.1 0.0 1.9e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298675523|ref|YP_003727273.1| - 6.3e-05 22.7 0.0 8.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|298675523|ref|YP_003727273.1| - 8.3e-05 21.5 0.0 0.00014 20.8 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase DOT1 PF08123.8 gi|298675523|ref|YP_003727273.1| - 0.0018 17.6 0.0 0.0034 16.7 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_11 PF08241.7 gi|298675523|ref|YP_003727273.1| - 0.0055 17.1 0.0 0.038 14.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298675523|ref|YP_003727273.1| - 0.0067 16.8 0.0 0.017 15.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|298675523|ref|YP_003727273.1| - 0.0076 15.6 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.14 gi|298675523|ref|YP_003727273.1| - 0.011 15.2 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_PK PF05891.7 gi|298675523|ref|YP_003727273.1| - 0.012 14.8 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase MTS PF05175.9 gi|298675523|ref|YP_003727273.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|298675523|ref|YP_003727273.1| - 0.048 14.0 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|298675523|ref|YP_003727273.1| - 0.078 12.0 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.13 gi|298675523|ref|YP_003727273.1| - 0.085 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Spermine_synth PF01564.12 gi|298675523|ref|YP_003727273.1| - 0.12 11.2 0.2 0.19 10.6 0.1 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase Methyltransf_4 PF02390.12 gi|298675523|ref|YP_003727273.1| - 0.19 10.7 0.9 0.27 10.2 0.1 1.6 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_26 PF13659.1 gi|298675524|ref|YP_003727274.1| - 4.3e-13 49.3 0.0 5.9e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298675524|ref|YP_003727274.1| - 2.4e-11 43.4 0.0 3.3e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|298675524|ref|YP_003727274.1| - 8.6e-11 41.5 0.0 1.2e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|298675524|ref|YP_003727274.1| - 4.1e-06 27.3 0.0 7.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298675524|ref|YP_003727274.1| - 6.2e-06 26.0 0.0 0.00022 21.0 0.0 2.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|298675524|ref|YP_003727274.1| - 0.00013 21.6 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|298675524|ref|YP_003727274.1| - 0.00074 18.6 0.0 0.00099 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|298675524|ref|YP_003727274.1| - 0.00083 19.7 0.0 0.044 14.2 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298675524|ref|YP_003727274.1| - 0.0013 19.1 0.0 0.12 12.9 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|298675524|ref|YP_003727274.1| - 0.0028 16.7 0.0 0.0084 15.2 0.0 1.7 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|298675524|ref|YP_003727274.1| - 0.0052 16.1 0.0 0.0073 15.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|298675524|ref|YP_003727274.1| - 0.11 11.5 0.0 0.54 9.3 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_16 PF10294.4 gi|298675524|ref|YP_003727274.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase OrfB_IS605 PF01385.14 gi|298675525|ref|YP_003727275.1| - 3e-51 174.0 1.5 3e-51 174.0 1.1 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675525|ref|YP_003727275.1| - 3.3e-11 42.6 0.1 1.1e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298675525|ref|YP_003727275.1| - 0.009 16.1 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) DUF919 PF06034.6 gi|298675525|ref|YP_003727275.1| - 0.8 9.3 4.2 0.24 11.0 0.5 2.0 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) TPP_enzyme_C PF02775.16 gi|298675526|ref|YP_003727276.1| - 4.1e-30 104.3 0.2 5.9e-30 103.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|298675526|ref|YP_003727276.1| - 3.1e-28 97.4 0.2 5.4e-28 96.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal G3P_antiterm PF04309.7 gi|298675526|ref|YP_003727276.1| - 0.07 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator POR_N PF01855.14 gi|298675527|ref|YP_003727277.1| - 4.7e-55 186.5 0.0 6.4e-55 186.1 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|298675527|ref|YP_003727277.1| - 7.9e-41 139.8 0.1 1.3e-40 139.1 0.1 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|298675527|ref|YP_003727277.1| - 8.1e-06 25.4 0.0 1.2e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|298675527|ref|YP_003727277.1| - 0.0033 17.3 0.0 0.0088 15.9 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain UDPGT PF00201.13 gi|298675528|ref|YP_003727278.1| - 0.035 12.6 0.3 0.066 11.7 0.1 1.6 2 0 0 2 2 2 0 UDP-glucoronosyl and UDP-glucosyl transferase DUF4006 PF13179.1 gi|298675528|ref|YP_003727278.1| - 0.039 13.5 0.2 0.07 12.6 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF4006) Imm11 PF15563.1 gi|298675528|ref|YP_003727278.1| - 0.076 12.1 1.0 0.21 10.6 0.7 1.8 1 1 0 1 1 1 0 Immunity protein 11 Conotoxin PF02950.12 gi|298675528|ref|YP_003727278.1| - 0.094 13.5 0.1 0.23 12.2 0.1 1.6 1 0 0 1 1 1 0 Conotoxin DUF3642 PF12182.3 gi|298675528|ref|YP_003727278.1| - 0.68 10.4 4.8 0.15 12.5 1.0 1.5 2 0 0 2 2 2 0 Bacterial lipoprotein Flavodoxin_3 PF12641.2 gi|298675529|ref|YP_003727279.1| - 2.9e-27 95.0 0.7 3.4e-27 94.8 0.5 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|298675529|ref|YP_003727279.1| - 5.5e-13 48.5 0.2 2.1e-08 33.6 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_5 PF12724.2 gi|298675529|ref|YP_003727279.1| - 1.8e-12 47.4 0.0 2.6e-12 46.9 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|298675529|ref|YP_003727279.1| - 1.7e-06 28.0 0.2 6.4e-06 26.2 0.0 1.9 1 1 0 2 2 2 1 Flavodoxin Flavodoxin_NdrI PF07972.6 gi|298675529|ref|YP_003727279.1| - 0.013 15.4 0.1 0.03 14.2 0.0 1.7 1 1 1 2 2 2 0 NrdI Flavodoxin like Glyco_hydro_30 PF02055.11 gi|298675529|ref|YP_003727279.1| - 0.032 12.4 0.1 0.036 12.2 0.0 1.1 1 0 0 1 1 1 0 O-Glycosyl hydrolase family 30 Flavodoxin_2 PF02525.12 gi|298675529|ref|YP_003727279.1| - 0.044 13.2 0.0 0.12 11.8 0.0 1.9 1 1 1 2 2 2 0 Flavodoxin-like fold Peptidase_S49 PF01343.13 gi|298675529|ref|YP_003727279.1| - 0.17 11.6 2.3 0.11 12.2 0.6 1.5 2 0 0 2 2 2 0 Peptidase family S49 AIRC PF00731.15 gi|298675530|ref|YP_003727280.1| - 1.1e-46 157.8 1.3 1.2e-46 157.7 0.9 1.0 1 0 0 1 1 1 1 AIR carboxylase CM_2 PF01817.16 gi|298675531|ref|YP_003727281.1| - 1.6e-17 63.3 7.1 1.8e-17 63.2 4.9 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF2120 PF09893.4 gi|298675531|ref|YP_003727281.1| - 0.015 15.2 1.4 0.017 15.0 1.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) DUF1383 PF07134.6 gi|298675531|ref|YP_003727281.1| - 0.12 11.2 2.1 0.12 11.2 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) DEAD_assoc PF08494.6 gi|298675531|ref|YP_003727281.1| - 0.19 11.4 1.3 0.24 11.0 0.9 1.2 1 0 0 1 1 1 0 DEAD/H associated TMF_TATA_bd PF12325.3 gi|298675531|ref|YP_003727281.1| - 0.22 11.2 5.8 0.86 9.3 4.1 1.8 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FTCD_C PF04961.7 gi|298675531|ref|YP_003727281.1| - 0.29 10.5 2.2 0.32 10.4 1.5 1.1 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase DivIC PF04977.10 gi|298675531|ref|YP_003727281.1| - 1.2 8.6 5.5 0.69 9.4 2.2 1.8 1 1 1 2 2 2 0 Septum formation initiator NAD_binding_8 PF13450.1 gi|298675532|ref|YP_003727282.1| - 1e-16 60.7 0.1 1.9e-16 59.8 0.1 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|298675532|ref|YP_003727282.1| - 5.6e-13 48.7 0.1 2.3e-11 43.4 0.0 2.7 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|298675532|ref|YP_003727282.1| - 4.2e-11 42.3 1.2 2.6e-07 29.8 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|298675532|ref|YP_003727282.1| - 8.7e-08 31.4 0.1 2.7e-07 29.8 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|298675532|ref|YP_003727282.1| - 1.2e-05 23.9 0.1 2.8e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|298675532|ref|YP_003727282.1| - 1.5e-05 24.2 0.2 2.2e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|298675532|ref|YP_003727282.1| - 2e-05 23.8 0.1 4.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|298675532|ref|YP_003727282.1| - 3.5e-05 22.8 1.4 0.1 11.4 0.0 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|298675532|ref|YP_003727282.1| - 0.00017 21.8 0.8 0.0019 18.5 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|298675532|ref|YP_003727282.1| - 0.00029 20.9 0.3 0.00093 19.3 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|298675532|ref|YP_003727282.1| - 0.0015 17.7 0.1 0.003 16.7 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|298675532|ref|YP_003727282.1| - 0.002 18.0 0.0 0.0071 16.2 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|298675532|ref|YP_003727282.1| - 0.0026 16.1 0.2 0.0026 16.1 0.1 1.7 2 0 0 2 2 2 1 GDP dissociation inhibitor Trp_halogenase PF04820.9 gi|298675532|ref|YP_003727282.1| - 0.0048 15.5 0.2 0.072 11.7 0.2 2.1 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|298675532|ref|YP_003727282.1| - 0.059 13.1 0.0 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|298675532|ref|YP_003727282.1| - 0.076 12.3 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|298675532|ref|YP_003727282.1| - 0.088 11.7 0.1 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein GHMP_kinases_N PF00288.21 gi|298675533|ref|YP_003727283.1| - 5.2e-11 42.4 2.3 1.5e-10 41.0 1.6 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|298675533|ref|YP_003727283.1| - 0.023 14.9 0.0 0.055 13.6 0.0 1.7 1 0 0 1 1 1 0 GHMP kinases C terminal TOMM6 PF15184.1 gi|298675533|ref|YP_003727283.1| - 0.085 12.1 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial import receptor subunit TOM6 homolog PPTA PF01239.17 gi|298675534|ref|YP_003727284.1| - 0.26 10.6 1.3 1 8.8 0.1 2.3 2 0 0 2 2 2 0 Protein prenyltransferase alpha subunit repeat DUF1638 PF07796.6 gi|298675535|ref|YP_003727285.1| - 8.5e-34 116.5 0.0 1.1e-33 116.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Hydantoinase_A PF01968.13 gi|298675536|ref|YP_003727286.1| - 4.1e-77 259.1 0.5 1.3e-76 257.4 0.0 2.0 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|298675536|ref|YP_003727286.1| - 1.8e-43 148.0 5.3 3.8e-41 140.5 0.8 3.1 3 1 0 3 3 3 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|298675536|ref|YP_003727286.1| - 9.5e-05 20.8 0.4 0.19 10.0 0.0 2.5 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|298675536|ref|YP_003727286.1| - 0.004 16.4 0.1 2 7.6 0.0 2.4 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family StbA PF06406.6 gi|298675536|ref|YP_003727286.1| - 0.0078 15.1 0.0 0.022 13.7 0.0 1.7 1 0 0 1 1 1 1 StbA protein FKBP_N PF01346.13 gi|298675536|ref|YP_003727286.1| - 0.033 14.2 0.0 0.15 12.0 0.0 2.1 1 1 1 2 2 2 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FtsA PF14450.1 gi|298675536|ref|YP_003727286.1| - 0.18 11.6 1.4 2.6 7.9 0.0 2.8 1 1 1 2 2 2 0 Cell division protein FtsA DUF1638 PF07796.6 gi|298675537|ref|YP_003727287.1| - 1.9e-41 141.4 0.0 2.5e-41 141.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1638) Phosphodiest PF01663.17 gi|298675538|ref|YP_003727288.1| - 8.3e-16 58.2 1.7 6.1e-14 52.1 1.2 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|298675538|ref|YP_003727288.1| - 5.7e-15 55.2 0.3 1.5e-11 44.0 0.0 2.7 2 1 0 3 3 3 2 Sulfatase Metalloenzyme PF01676.13 gi|298675538|ref|YP_003727288.1| - 3.7e-08 33.0 2.9 1.3e-06 28.0 1.5 2.8 2 1 0 2 2 2 1 Metalloenzyme superfamily DAP3 PF10236.4 gi|298675538|ref|YP_003727288.1| - 0.0064 15.4 0.2 0.011 14.6 0.1 1.4 1 1 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 Alk_phosphatase PF00245.15 gi|298675538|ref|YP_003727288.1| - 0.018 13.7 0.3 2 7.0 0.0 2.6 2 1 1 3 3 3 0 Alkaline phosphatase PglZ PF08665.7 gi|298675538|ref|YP_003727288.1| - 0.03 13.9 0.8 1.5 8.4 0.6 2.4 1 1 0 1 1 1 0 PglZ domain Cna_B PF05738.8 gi|298675539|ref|YP_003727289.1| - 6.8e-52 173.1 56.6 4.3e-12 45.6 2.2 6.4 7 0 0 7 7 7 5 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|298675539|ref|YP_003727289.1| - 1.3e-35 121.3 23.0 6.3e-09 35.7 0.7 5.9 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain MG1 PF11974.3 gi|298675539|ref|YP_003727289.1| - 3e-14 53.3 1.5 0.17 12.4 0.0 5.6 5 0 0 5 5 5 5 Alpha-2-macroglobulin MG1 domain DUF4480 PF13715.1 gi|298675539|ref|YP_003727289.1| - 1.1e-11 44.6 15.6 0.007 16.3 0.2 6.4 6 0 0 6 6 6 4 Domain of unknown function (DUF4480) fn3 PF00041.16 gi|298675539|ref|YP_003727289.1| - 3.7e-06 26.9 15.1 0.29 11.3 0.1 5.6 5 0 0 5 5 5 2 Fibronectin type III domain fn3_3 PF14686.1 gi|298675539|ref|YP_003727289.1| - 0.00053 20.0 15.1 0.95 9.6 0.0 5.9 4 2 1 5 5 5 2 Polysaccharide lyase family 4, domain II Y_Y_Y PF07495.8 gi|298675539|ref|YP_003727289.1| - 0.0025 17.5 12.7 0.36 10.6 0.2 4.1 3 0 0 3 3 3 2 Y_Y_Y domain EMP24_GP25L PF01105.19 gi|298675539|ref|YP_003727289.1| - 0.0053 16.5 8.0 4.3 7.0 0.0 4.5 5 0 0 5 5 5 3 emp24/gp25L/p24 family/GOLD DUF1894 PF08979.6 gi|298675539|ref|YP_003727289.1| - 0.09 12.8 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1894) CS PF04969.11 gi|298675540|ref|YP_003727290.1| - 0.00015 22.2 0.5 0.00019 21.9 0.4 1.1 1 0 0 1 1 1 1 CS domain HSP20 PF00011.16 gi|298675540|ref|YP_003727290.1| - 0.00017 21.3 0.2 0.00031 20.5 0.1 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|298675540|ref|YP_003727290.1| - 0.0012 18.4 0.2 0.0012 18.3 0.2 1.0 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 TryThrA_C PF12319.3 gi|298675541|ref|YP_003727291.1| - 0.021 14.0 0.2 0.03 13.4 0.2 1.2 1 0 0 1 1 1 0 Tryptophan-Threonine-rich plasmodium antigen C terminal Mob_synth_C PF06463.8 gi|298675541|ref|YP_003727291.1| - 0.022 14.4 0.2 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 Molybdenum Cofactor Synthesis C DUF1910 PF08928.5 gi|298675541|ref|YP_003727291.1| - 0.056 13.4 0.3 0.11 12.4 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1910) Pol_alpha_B_N PF08418.5 gi|298675541|ref|YP_003727291.1| - 0.084 12.4 0.7 2.8 7.4 0.2 2.0 1 1 1 2 2 2 0 DNA polymerase alpha subunit B N-terminal YycI PF09648.5 gi|298675541|ref|YP_003727291.1| - 0.11 11.9 1.9 0.35 10.2 0.9 1.8 1 1 1 2 2 2 0 YycH protein TRAM PF01938.15 gi|298675542|ref|YP_003727292.1| - 8.4e-15 54.3 0.9 9.1e-15 54.2 0.6 1.0 1 0 0 1 1 1 1 TRAM domain Na_Ca_ex PF01699.19 gi|298675543|ref|YP_003727293.1| - 5.4e-56 188.0 33.3 1.7e-29 102.2 8.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Wzy_C PF04932.10 gi|298675543|ref|YP_003727293.1| - 5.7 6.7 18.9 0.068 12.9 1.5 3.0 1 1 2 3 3 3 0 O-Antigen ligase Flg_bb_rod PF00460.15 gi|298675543|ref|YP_003727293.1| - 5.9 6.7 7.3 22 4.8 0.1 2.5 2 0 0 2 2 2 0 Flagella basal body rod protein UPF0016 PF01169.14 gi|298675544|ref|YP_003727294.1| - 2.4e-37 126.9 17.3 3.1e-19 68.9 3.0 2.0 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 TauE PF01925.14 gi|298675544|ref|YP_003727294.1| - 0.019 14.4 13.0 0.093 12.1 2.9 2.1 1 1 1 2 2 2 0 Sulfite exporter TauE/SafE DsbD_2 PF13386.1 gi|298675544|ref|YP_003727294.1| - 0.08 12.6 9.8 0.18 11.5 0.3 2.1 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Keratin_assoc PF09775.4 gi|298675544|ref|YP_003727294.1| - 4.9 6.6 10.6 0.37 10.3 2.6 2.2 2 1 0 2 2 2 0 Keratinocyte-associated protein 2 MoaE PF02391.12 gi|298675545|ref|YP_003727295.1| - 3.8e-27 94.4 0.2 6.6e-27 93.6 0.2 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|298675545|ref|YP_003727295.1| - 2e-17 63.1 1.4 2e-17 63.1 1.0 1.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|298675545|ref|YP_003727295.1| - 7.1e-05 22.7 0.1 0.00015 21.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|298675545|ref|YP_003727295.1| - 0.001 18.5 1.3 0.0018 17.7 0.2 1.8 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|298675545|ref|YP_003727295.1| - 0.0011 19.4 3.4 0.012 16.1 0.5 3.1 2 2 0 2 2 2 1 Miro-like protein AAA_16 PF13191.1 gi|298675545|ref|YP_003727295.1| - 0.005 16.8 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Hydrolase PF00702.21 gi|298675545|ref|YP_003727295.1| - 0.015 15.7 0.1 0.056 13.8 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase AAA_18 PF13238.1 gi|298675545|ref|YP_003727295.1| - 0.019 15.3 1.0 0.39 11.0 0.1 2.3 1 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|298675545|ref|YP_003727295.1| - 0.019 15.7 0.3 0.095 13.5 0.2 2.3 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|298675545|ref|YP_003727295.1| - 0.021 14.7 0.4 0.021 14.7 0.3 2.1 2 2 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|298675545|ref|YP_003727295.1| - 0.023 15.0 0.3 0.044 14.0 0.2 1.7 1 1 0 1 1 1 0 ABC transporter SRPRB PF09439.5 gi|298675545|ref|YP_003727295.1| - 0.023 13.8 0.5 0.087 12.0 0.2 2.0 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|298675545|ref|YP_003727295.1| - 0.033 14.3 0.0 0.11 12.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|298675545|ref|YP_003727295.1| - 0.049 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_31 PF13614.1 gi|298675545|ref|YP_003727295.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|298675545|ref|YP_003727295.1| - 0.068 12.6 0.4 0.16 11.4 0.2 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation DUF11 PF01345.13 gi|298675546|ref|YP_003727296.1| - 3.2e-05 23.8 11.6 0.0082 16.1 0.1 3.3 3 0 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.6 gi|298675546|ref|YP_003727296.1| - 0.00051 20.0 16.0 0.05 13.6 1.3 3.4 3 0 0 3 3 3 2 CARDB TRAP_beta PF05753.9 gi|298675546|ref|YP_003727296.1| - 0.35 10.0 5.4 0.87 8.7 0.8 2.4 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) Spore_coat_CotO PF14153.1 gi|298675547|ref|YP_003727297.1| - 0.0023 17.4 0.1 0.0025 17.2 0.1 1.1 1 0 0 1 1 1 1 Spore coat protein CotO Kringle PF00051.13 gi|298675547|ref|YP_003727297.1| - 0.055 13.5 0.0 0.064 13.3 0.0 1.1 1 0 0 1 1 1 0 Kringle domain Peptidase_M22 PF00814.20 gi|298675548|ref|YP_003727298.1| - 7.6e-87 291.1 0.0 8.8e-87 290.9 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|298675548|ref|YP_003727298.1| - 0.032 13.3 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase CheD PF03975.8 gi|298675548|ref|YP_003727298.1| - 0.069 12.9 0.1 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 CheD chemotactic sensory transduction APH PF01636.18 gi|298675549|ref|YP_003727299.1| - 2.8e-10 40.3 0.1 5.8e-06 26.2 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|298675549|ref|YP_003727299.1| - 4.6e-09 35.8 0.0 7.3e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|298675549|ref|YP_003727299.1| - 8.6e-06 24.9 0.0 0.0023 17.0 0.0 2.1 1 1 1 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|298675549|ref|YP_003727299.1| - 2.2e-05 23.7 0.7 4.2e-05 22.8 0.5 1.8 1 1 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.15 gi|298675549|ref|YP_003727299.1| - 0.00054 19.5 0.1 0.4 10.2 0.0 2.3 1 1 1 2 2 2 2 Choline/ethanolamine kinase WaaY PF06176.6 gi|298675549|ref|YP_003727299.1| - 0.006 15.8 0.3 0.0099 15.1 0.1 1.5 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|298675549|ref|YP_003727299.1| - 0.015 14.4 0.0 0.027 13.5 0.0 1.6 1 1 0 1 1 1 0 Protein tyrosine kinase Ham1p_like PF01725.11 gi|298675550|ref|YP_003727300.1| - 1.1e-52 178.1 0.0 1.3e-52 177.9 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF61 PF01886.11 gi|298675550|ref|YP_003727300.1| - 0.018 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF61 MutL PF13941.1 gi|298675550|ref|YP_003727300.1| - 0.084 11.1 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 MutL protein Cyclase PF04199.8 gi|298675551|ref|YP_003727301.1| - 1e-25 90.4 0.0 1.2e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase PHP PF02811.14 gi|298675552|ref|YP_003727302.1| - 1.2e-17 64.2 0.4 1.3e-17 64.1 0.3 1.2 1 0 0 1 1 1 1 PHP domain DUF3855 PF12967.2 gi|298675552|ref|YP_003727302.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3855) Imp-YgjV PF10688.4 gi|298675553|ref|YP_003727303.1| - 0.00023 20.6 0.5 0.00035 20.0 0.4 1.2 1 0 0 1 1 1 1 Bacterial inner membrane protein MtN3_slv PF03083.11 gi|298675553|ref|YP_003727303.1| - 0.045 13.6 1.4 0.085 12.7 1.0 1.4 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange Pox_D5 PF03288.11 gi|298675553|ref|YP_003727303.1| - 0.1 12.8 1.1 0.51 10.6 0.5 2.2 1 1 1 2 2 2 0 Poxvirus D5 protein-like Peptidase_M50 PF02163.17 gi|298675554|ref|YP_003727304.1| - 3.9e-26 91.1 0.0 3e-25 88.3 0.0 2.2 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|298675554|ref|YP_003727304.1| - 1.6e-24 85.5 2.6 6.6e-12 45.1 0.5 2.3 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|298675554|ref|YP_003727304.1| - 8.9e-12 45.0 4.2 7.1e-07 29.3 0.2 2.5 2 0 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|298675554|ref|YP_003727304.1| - 4.6e-05 23.2 1.5 0.3 10.9 0.2 2.4 2 0 0 2 2 2 2 PDZ-like domain Tricorn_PDZ PF14685.1 gi|298675554|ref|YP_003727304.1| - 0.00014 21.6 1.4 0.1 12.4 0.1 2.3 1 1 1 2 2 2 2 Tricorn protease PDZ domain GRASP55_65 PF04495.9 gi|298675554|ref|YP_003727304.1| - 0.0018 18.2 0.3 0.14 12.1 0.0 2.4 1 1 0 2 2 2 1 GRASP55/65 PDZ-like domain DUF3394 PF11874.3 gi|298675554|ref|YP_003727304.1| - 6 6.3 7.4 4.4 6.8 0.0 3.1 2 1 0 3 3 3 0 Domain of unknown function (DUF3394) CutA1 PF03091.10 gi|298675555|ref|YP_003727305.1| - 9.4e-32 108.7 0.5 1.1e-31 108.5 0.3 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Fumerase PF05681.9 gi|298675556|ref|YP_003727306.1| - 8e-93 310.4 0.0 9.1e-93 310.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|298675557|ref|YP_003727307.1| - 3.2e-53 179.9 0.0 3.8e-53 179.6 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF367 PF04034.8 gi|298675558|ref|YP_003727308.1| - 1.5e-47 160.3 0.0 1.9e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|298675558|ref|YP_003727308.1| - 2.1e-11 43.1 0.2 3.3e-11 42.5 0.2 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI OrfB_IS605 PF01385.14 gi|298675559|ref|YP_003727309.1| - 6.3e-44 150.0 6.3 6.3e-44 150.0 4.4 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675559|ref|YP_003727309.1| - 4e-24 84.0 0.4 7.8e-24 83.1 0.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675559|ref|YP_003727309.1| - 5.8e-20 70.3 1.3 1.4e-19 69.1 0.9 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.14 gi|298675559|ref|YP_003727309.1| - 0.072 12.7 0.1 0.21 11.2 0.0 1.9 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family M_domain PF12938.2 gi|298675559|ref|YP_003727309.1| - 0.14 11.9 5.6 0.18 11.6 1.5 2.1 2 0 0 2 2 2 0 M domain of GW182 Occludin_ELL PF07303.8 gi|298675559|ref|YP_003727309.1| - 0.72 10.6 8.9 0.41 11.4 2.2 2.4 2 0 0 2 2 2 0 Occludin homology domain Phage_GP20 PF06810.6 gi|298675559|ref|YP_003727309.1| - 1.4 8.3 12.4 0.086 12.2 1.0 2.6 3 0 0 3 3 3 0 Phage minor structural protein GP20 DUF904 PF06005.7 gi|298675559|ref|YP_003727309.1| - 3.2 8.1 8.0 1.5 9.1 1.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Rubredoxin PF00301.15 gi|298675559|ref|YP_003727309.1| - 4.2 7.3 7.2 42 4.1 5.0 2.3 1 1 0 1 1 1 0 Rubredoxin Ferritin PF00210.19 gi|298675560|ref|YP_003727310.1| - 1.4e-19 70.2 0.0 1.7e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|298675560|ref|YP_003727310.1| - 0.00096 19.4 0.0 0.0012 19.1 0.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|298675560|ref|YP_003727310.1| - 0.017 15.0 0.0 0.025 14.5 0.0 1.3 1 1 0 1 1 1 0 Ferritin-like domain Zip PF02535.17 gi|298675561|ref|YP_003727311.1| - 4.9e-24 84.9 11.3 7.6e-20 71.1 1.8 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter Cation_efflux PF01545.16 gi|298675561|ref|YP_003727311.1| - 0.33 9.9 6.6 0.086 11.8 1.4 2.1 2 0 0 2 2 2 0 Cation efflux family ABC_tran PF00005.22 gi|298675562|ref|YP_003727312.1| - 3.2e-35 121.4 0.0 5.1e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675562|ref|YP_003727312.1| - 2.4e-14 54.0 2.7 1e-12 48.6 1.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|298675562|ref|YP_003727312.1| - 3.1e-06 27.6 3.7 5.4e-06 26.8 2.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675562|ref|YP_003727312.1| - 9.2e-05 22.5 0.3 0.00045 20.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|298675562|ref|YP_003727312.1| - 0.00012 21.5 0.1 0.00025 20.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|298675562|ref|YP_003727312.1| - 0.00019 20.7 0.3 0.00028 20.2 0.2 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|298675562|ref|YP_003727312.1| - 0.00033 19.8 7.3 0.026 13.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|298675562|ref|YP_003727312.1| - 0.00094 18.3 0.3 0.0033 16.6 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|298675562|ref|YP_003727312.1| - 0.0013 18.9 0.7 0.012 15.8 0.5 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|298675562|ref|YP_003727312.1| - 0.0029 16.1 0.8 1.2 7.5 0.1 2.2 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.10 gi|298675562|ref|YP_003727312.1| - 0.0041 15.8 0.0 0.0051 15.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|298675562|ref|YP_003727312.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|298675562|ref|YP_003727312.1| - 0.019 14.4 0.5 0.066 12.6 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|298675562|ref|YP_003727312.1| - 0.024 14.2 0.0 0.042 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|298675562|ref|YP_003727312.1| - 0.028 14.0 0.3 0.082 12.5 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_14 PF13173.1 gi|298675562|ref|YP_003727312.1| - 0.036 13.9 0.2 3.3 7.6 0.1 2.5 1 1 0 1 1 1 0 AAA domain Trp_repressor PF01371.14 gi|298675562|ref|YP_003727312.1| - 0.04 13.8 0.2 0.12 12.3 0.0 1.8 2 0 0 2 2 1 0 Trp repressor protein AAA_28 PF13521.1 gi|298675562|ref|YP_003727312.1| - 0.065 13.2 0.3 1.4 8.8 0.1 2.6 2 1 1 3 3 3 0 AAA domain DUF4237 PF14021.1 gi|298675562|ref|YP_003727312.1| - 0.1 12.8 0.0 0.27 11.5 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF4237) SbcCD_C PF13558.1 gi|298675562|ref|YP_003727312.1| - 0.1 12.5 0.0 0.36 10.7 0.0 1.9 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit ABC2_membrane PF01061.19 gi|298675563|ref|YP_003727313.1| - 4.4e-38 130.5 14.2 4.4e-38 130.5 9.9 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|298675563|ref|YP_003727313.1| - 3.2e-16 59.2 25.2 4.3e-16 58.8 17.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|298675563|ref|YP_003727313.1| - 2e-05 23.5 15.0 2e-05 23.5 10.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein OTCace_N PF02729.16 gi|298675564|ref|YP_003727314.1| - 1.7e-46 157.4 0.0 4.7e-46 155.9 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|298675564|ref|YP_003727314.1| - 7.4e-40 136.4 0.0 1.1e-39 135.8 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|298675565|ref|YP_003727315.1| - 6.3e-32 109.4 3.8 9.4e-32 108.9 2.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|298675565|ref|YP_003727315.1| - 2.5e-18 65.2 7.9 2.5e-18 65.2 5.5 1.7 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain TF_Zn_Ribbon PF08271.7 gi|298675565|ref|YP_003727315.1| - 0.072 12.4 0.6 0.14 11.5 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DapB_C PF05173.9 gi|298675566|ref|YP_003727316.1| - 4.8e-48 162.2 0.1 6.5e-48 161.8 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|298675566|ref|YP_003727316.1| - 2e-34 118.1 1.0 3.1e-34 117.5 0.7 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.19 gi|298675566|ref|YP_003727316.1| - 0.0067 16.3 0.2 0.023 14.6 0.1 1.9 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain dTMP_synthase PF02593.9 gi|298675566|ref|YP_003727316.1| - 0.026 13.8 0.0 0.039 13.2 0.0 1.3 1 0 0 1 1 1 0 Thymidylate synthase Semialdhyde_dh PF01118.19 gi|298675566|ref|YP_003727316.1| - 0.033 14.4 0.0 0.064 13.5 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DHDPS PF00701.17 gi|298675567|ref|YP_003727317.1| - 1.7e-97 325.5 0.3 1.9e-97 325.3 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.17 gi|298675567|ref|YP_003727317.1| - 0.023 14.3 0.4 0.14 11.8 0.1 2.1 1 1 1 2 2 2 0 PA domain GDC-P PF02347.11 gi|298675567|ref|YP_003727317.1| - 0.048 12.3 0.0 0.066 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Ribosomal_S17e PF00833.13 gi|298675568|ref|YP_003727318.1| - 9.7e-14 51.1 3.4 1.1e-13 51.0 2.4 1.0 1 0 0 1 1 1 1 Ribosomal S17 PNPase PF03726.9 gi|298675568|ref|YP_003727318.1| - 0.015 15.5 0.5 0.018 15.2 0.3 1.1 1 0 0 1 1 1 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain CRT-like PF08627.5 gi|298675568|ref|YP_003727318.1| - 0.023 14.6 0.8 0.028 14.3 0.5 1.2 1 0 0 1 1 1 0 CRT-like DUF643 PF04867.7 gi|298675568|ref|YP_003727318.1| - 0.081 13.3 0.8 0.085 13.2 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF643) HAP PF03866.8 gi|298675569|ref|YP_003727319.1| - 0.18 11.5 1.5 0.31 10.8 1.1 1.4 1 1 0 1 1 1 0 Hydrophobic abundant protein (HAP) DUF4381 PF14316.1 gi|298675569|ref|YP_003727319.1| - 0.42 10.7 1.9 0.37 10.9 0.5 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) DUF996 PF06195.8 gi|298675569|ref|YP_003727319.1| - 0.96 9.4 4.8 1.6 8.7 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF996) DUF4199 PF13858.1 gi|298675569|ref|YP_003727319.1| - 1.1 9.2 4.6 0.54 10.1 1.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) IMS PF00817.15 gi|298675570|ref|YP_003727320.1| - 6.3e-51 172.0 0.0 9.4e-51 171.5 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|298675570|ref|YP_003727320.1| - 1.2e-21 76.9 0.2 2.2e-21 76.1 0.1 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|298675570|ref|YP_003727320.1| - 1.8e-10 40.2 0.0 4.8e-10 38.8 0.0 1.8 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|298675570|ref|YP_003727320.1| - 4.6e-06 26.7 0.0 1.2e-05 25.4 0.0 1.8 1 1 0 1 1 1 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|298675570|ref|YP_003727320.1| - 0.0038 17.1 0.0 0.014 15.2 0.0 2.1 1 1 0 1 1 1 1 Pathogenicity locus DUF1624 PF07786.7 gi|298675571|ref|YP_003727321.1| - 3e-71 239.3 21.0 3.5e-71 239.1 14.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1624) Acyl_transf_3 PF01757.17 gi|298675571|ref|YP_003727321.1| - 4.2e-06 25.8 40.1 9.3e-06 24.6 8.6 2.6 1 1 1 2 2 2 2 Acyltransferase family OpgC_C PF10129.4 gi|298675571|ref|YP_003727321.1| - 0.00021 20.0 11.9 0.0025 16.5 6.0 2.3 2 1 0 2 2 2 2 OpgC protein DUF3325 PF11804.3 gi|298675571|ref|YP_003727321.1| - 0.47 10.3 4.4 0.38 10.7 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3325) DUF2072 PF09845.4 gi|298675572|ref|YP_003727322.1| - 2.4e-43 147.1 0.4 3e-43 146.8 0.2 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) Spt4 PF06093.8 gi|298675572|ref|YP_003727322.1| - 0.06 13.2 0.6 0.29 11.0 0.3 2.0 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger FTO_NTD PF12933.2 gi|298675572|ref|YP_003727322.1| - 0.081 12.0 0.1 0.1 11.6 0.1 1.1 1 0 0 1 1 1 0 FTO catalytic domain zinc_ribbon_2 PF13240.1 gi|298675572|ref|YP_003727322.1| - 0.17 11.4 4.5 0.34 10.4 3.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298675572|ref|YP_003727322.1| - 0.35 10.1 3.1 1.4 8.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PNP_UDP_1 PF01048.15 gi|298675573|ref|YP_003727323.1| - 5.1e-43 146.7 0.0 5.9e-43 146.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DNA_pol_B_thumb PF14791.1 gi|298675573|ref|YP_003727323.1| - 0.052 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta thumb Pribosyltran PF00156.22 gi|298675574|ref|YP_003727324.1| - 2.2e-20 72.6 0.0 3.1e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|298675574|ref|YP_003727324.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SRP54 PF00448.17 gi|298675575|ref|YP_003727325.1| - 1.3e-71 240.1 0.4 4.2e-71 238.4 0.0 1.9 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|298675575|ref|YP_003727325.1| - 2.2e-30 104.9 5.2 2.2e-30 104.9 3.6 2.9 4 0 0 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|298675575|ref|YP_003727325.1| - 5.2e-17 61.7 0.5 5.2e-17 61.7 0.4 2.8 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|298675575|ref|YP_003727325.1| - 8.2e-07 28.6 0.6 2e-05 24.1 0.4 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|298675575|ref|YP_003727325.1| - 1e-06 28.3 1.2 2.2e-05 23.9 0.8 2.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|298675575|ref|YP_003727325.1| - 3e-05 23.7 0.1 7.1e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|298675575|ref|YP_003727325.1| - 8.7e-05 22.6 0.1 0.00054 20.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain 6PF2K PF01591.13 gi|298675575|ref|YP_003727325.1| - 0.00018 20.6 0.0 0.00037 19.6 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_17 PF13207.1 gi|298675575|ref|YP_003727325.1| - 0.00058 20.6 0.0 0.0014 19.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|298675575|ref|YP_003727325.1| - 0.00065 18.8 0.0 0.0016 17.5 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|298675575|ref|YP_003727325.1| - 0.00072 19.5 0.0 0.002 18.1 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|298675575|ref|YP_003727325.1| - 0.0008 19.3 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|298675575|ref|YP_003727325.1| - 0.0011 18.4 0.1 0.0019 17.7 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|298675575|ref|YP_003727325.1| - 0.0018 17.0 0.0 0.025 13.3 0.0 2.3 2 0 0 2 2 2 1 ArgK protein APS_kinase PF01583.15 gi|298675575|ref|YP_003727325.1| - 0.0022 17.6 0.0 0.0054 16.3 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase TrwB_AAD_bind PF10412.4 gi|298675575|ref|YP_003727325.1| - 0.0025 16.4 0.1 0.0047 15.6 0.1 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Thymidylate_kin PF02223.12 gi|298675575|ref|YP_003727325.1| - 0.0051 16.1 0.5 0.03 13.6 0.1 2.4 2 0 0 2 2 2 1 Thymidylate kinase ATP_bind_1 PF03029.12 gi|298675575|ref|YP_003727325.1| - 0.0059 16.1 0.2 0.029 13.8 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein TFIIA_gamma_N PF02268.11 gi|298675575|ref|YP_003727325.1| - 0.0066 16.0 0.0 0.018 14.6 0.0 1.7 1 0 0 1 1 1 1 Transcription initiation factor IIA, gamma subunit, helical domain KTI12 PF08433.5 gi|298675575|ref|YP_003727325.1| - 0.0067 15.6 0.0 0.015 14.5 0.0 1.6 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|298675575|ref|YP_003727325.1| - 0.0071 15.9 0.3 0.055 13.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain LpxK PF02606.9 gi|298675575|ref|YP_003727325.1| - 0.011 14.7 0.1 0.02 13.8 0.1 1.4 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_18 PF13238.1 gi|298675575|ref|YP_003727325.1| - 0.018 15.3 0.5 0.046 14.0 0.0 2.0 2 1 0 2 2 1 0 AAA domain SRPRB PF09439.5 gi|298675575|ref|YP_003727325.1| - 0.023 13.8 0.2 3.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_5 PF07728.9 gi|298675575|ref|YP_003727325.1| - 0.068 12.9 0.6 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|298675575|ref|YP_003727325.1| - 0.12 12.7 1.7 0.85 9.9 1.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|298675575|ref|YP_003727325.1| - 0.16 11.9 0.3 0.67 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain GATase PF00117.23 gi|298675576|ref|YP_003727326.1| - 3.4e-34 117.9 0.1 3.8e-34 117.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|298675576|ref|YP_003727326.1| - 2.6e-11 43.3 0.3 1.2e-10 41.2 0.1 2.1 2 1 0 2 2 2 1 Peptidase C26 DeoC PF01791.4 gi|298675577|ref|YP_003727327.1| - 2.3e-57 194.0 0.0 2.7e-57 193.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase UPF0150 PF03681.10 gi|298675577|ref|YP_003727327.1| - 0.062 12.9 0.1 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) PucR PF07905.6 gi|298675577|ref|YP_003727327.1| - 0.11 12.1 0.0 4 7.0 0.0 2.4 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family DHQS PF01959.11 gi|298675578|ref|YP_003727328.1| - 6.3e-156 518.4 5.8 7.1e-156 518.3 4.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|298675578|ref|YP_003727328.1| - 0.018 14.9 0.2 1.3 8.9 0.0 2.4 1 1 1 2 2 2 0 Opacity-associated protein A LysM-like domain DUF2577 PF10844.3 gi|298675578|ref|YP_003727328.1| - 0.044 13.8 1.5 4.3 7.4 0.4 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2577) DUF137 PF02006.11 gi|298675578|ref|YP_003727328.1| - 0.066 12.5 1.6 7 5.9 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function DUF137 DHquinase_I PF01487.10 gi|298675579|ref|YP_003727329.1| - 1.1e-59 201.8 0.0 1.3e-59 201.6 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Shikimate_dh_N PF08501.6 gi|298675580|ref|YP_003727330.1| - 2e-26 91.8 0.0 4.3e-26 90.7 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|298675580|ref|YP_003727330.1| - 6.4e-18 65.1 0.2 1e-17 64.5 0.1 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|298675580|ref|YP_003727330.1| - 0.0001 22.6 0.1 0.00018 21.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|298675580|ref|YP_003727330.1| - 0.00013 21.2 0.1 0.00028 20.0 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|298675580|ref|YP_003727330.1| - 0.0037 16.6 0.2 0.0093 15.3 0.0 1.8 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|298675580|ref|YP_003727330.1| - 0.034 13.1 0.0 0.045 12.7 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase SIS_2 PF13580.1 gi|298675580|ref|YP_003727330.1| - 0.041 13.6 0.4 0.066 12.9 0.3 1.3 1 0 0 1 1 1 0 SIS domain PDH PF02153.12 gi|298675581|ref|YP_003727331.1| - 6e-60 202.3 0.0 9.2e-60 201.6 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NAD_binding_2 PF03446.10 gi|298675581|ref|YP_003727331.1| - 6.3e-12 45.6 0.0 1.4e-11 44.4 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|298675581|ref|YP_003727331.1| - 4e-09 36.7 0.0 2.5e-08 34.2 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|298675581|ref|YP_003727331.1| - 2.1e-08 33.4 0.0 3.9e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|298675581|ref|YP_003727331.1| - 6e-07 29.3 0.8 7.5e-05 22.5 0.6 2.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FDX-ACB PF03147.9 gi|298675581|ref|YP_003727331.1| - 9.5e-06 25.7 0.1 3.4e-05 23.9 0.0 1.9 2 0 0 2 2 2 1 Ferredoxin-fold anticodon binding domain IlvN PF07991.7 gi|298675581|ref|YP_003727331.1| - 0.00019 20.8 0.0 0.00036 19.9 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|298675581|ref|YP_003727331.1| - 0.0005 19.7 0.1 0.55 9.8 0.0 2.5 1 1 1 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|298675581|ref|YP_003727331.1| - 0.00088 18.7 0.0 0.0031 16.9 0.0 1.9 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|298675581|ref|YP_003727331.1| - 0.0043 17.0 0.0 0.0085 16.1 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|298675581|ref|YP_003727331.1| - 0.0064 16.3 1.2 0.026 14.4 0.0 2.6 4 0 0 4 4 4 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|298675581|ref|YP_003727331.1| - 0.011 16.0 0.0 0.034 14.4 0.0 1.9 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|298675581|ref|YP_003727331.1| - 0.02 14.1 0.2 0.074 12.2 0.0 2.1 2 1 0 2 2 2 0 NmrA-like family WzyE PF06899.6 gi|298675581|ref|YP_003727331.1| - 0.031 12.9 0.0 0.046 12.4 0.0 1.1 1 0 0 1 1 1 0 WzyE protein CoA_binding PF02629.14 gi|298675581|ref|YP_003727331.1| - 0.056 13.9 0.0 0.51 10.8 0.0 2.6 3 0 0 3 3 3 0 CoA binding domain GFO_IDH_MocA PF01408.17 gi|298675581|ref|YP_003727331.1| - 0.061 13.8 0.1 0.21 12.1 0.0 1.9 2 0 0 2 2 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_C PF03720.10 gi|298675581|ref|YP_003727331.1| - 0.067 13.3 0.1 2.4 8.3 0.0 3.0 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RmlD_sub_bind PF04321.12 gi|298675581|ref|YP_003727331.1| - 0.082 11.7 0.0 0.18 10.6 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain AlaDh_PNT_C PF01262.16 gi|298675581|ref|YP_003727331.1| - 0.97 8.9 3.6 5 6.6 0.2 3.3 3 1 1 4 4 3 0 Alanine dehydrogenase/PNT, C-terminal domain TIM PF00121.13 gi|298675582|ref|YP_003727332.1| - 4.3e-33 114.3 1.5 4.9e-31 107.6 1.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|298675582|ref|YP_003727332.1| - 2.7e-05 23.3 0.3 2.7e-05 23.3 0.2 1.9 2 1 1 3 3 3 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|298675582|ref|YP_003727332.1| - 0.00037 19.8 0.1 0.04 13.1 0.0 2.7 3 0 0 3 3 3 1 Histidine biosynthesis protein NMO PF03060.10 gi|298675582|ref|YP_003727332.1| - 0.00042 19.5 5.6 0.002 17.3 3.9 2.1 1 1 0 1 1 1 1 Nitronate monooxygenase Hydrolase_like PF13242.1 gi|298675582|ref|YP_003727332.1| - 0.00088 18.9 0.2 1.5 8.5 0.0 2.4 2 0 0 2 2 2 2 HAD-hyrolase-like IGPS PF00218.16 gi|298675582|ref|YP_003727332.1| - 0.0041 16.2 0.0 0.0096 14.9 0.0 1.6 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|298675582|ref|YP_003727332.1| - 0.0044 15.9 0.8 0.0073 15.1 0.1 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase TIM-br_sig_trns PF09370.5 gi|298675582|ref|YP_003727332.1| - 0.041 12.9 0.4 0.12 11.4 0.1 1.9 2 1 0 2 2 2 0 TIM-barrel signal transduction protein PRT_C PF08372.5 gi|298675582|ref|YP_003727332.1| - 0.053 13.0 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal PcrB PF01884.12 gi|298675582|ref|YP_003727332.1| - 0.087 12.0 1.1 0.1 11.8 0.7 1.5 1 1 0 1 1 1 0 PcrB family Fae PF08714.6 gi|298675583|ref|YP_003727333.1| - 5.1e-72 240.7 0.4 1.3e-71 239.4 0.3 1.7 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|298675583|ref|YP_003727333.1| - 1.5e-26 93.1 0.9 3e-26 92.2 0.3 1.7 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|298675583|ref|YP_003727333.1| - 1.2e-05 24.5 1.6 7.4e-05 21.9 1.0 2.3 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|298675583|ref|YP_003727333.1| - 0.00063 19.3 0.7 0.0096 15.4 0.2 2.4 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.12 gi|298675583|ref|YP_003727333.1| - 0.0015 17.8 0.7 0.0064 15.7 0.1 2.0 2 0 0 2 2 2 1 PcrB family Peripla_BP_4 PF13407.1 gi|298675583|ref|YP_003727333.1| - 0.0025 17.2 0.7 0.0069 15.7 0.5 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain DUF1446 PF07287.6 gi|298675583|ref|YP_003727333.1| - 0.024 13.1 0.1 0.042 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1446) FMN_dh PF01070.13 gi|298675583|ref|YP_003727333.1| - 0.026 13.4 0.7 0.051 12.4 0.5 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase HhH-GPD PF00730.20 gi|298675584|ref|YP_003727334.1| - 1.3e-24 86.5 0.0 1.7e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|298675584|ref|YP_003727334.1| - 3.3e-09 35.9 0.0 1.2e-08 34.1 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|298675584|ref|YP_003727334.1| - 0.00021 21.0 0.1 0.046 13.4 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2400) EndIII_4Fe-2S PF10576.4 gi|298675584|ref|YP_003727334.1| - 0.0029 17.7 4.5 0.0049 17.0 3.1 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.2 gi|298675584|ref|YP_003727334.1| - 0.018 14.9 0.0 4.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif Borrelia_orfD PF02999.9 gi|298675584|ref|YP_003727334.1| - 0.029 14.4 0.8 0.059 13.5 0.6 1.5 1 0 0 1 1 1 0 Borrelia orf-D family HHH_5 PF14520.1 gi|298675584|ref|YP_003727334.1| - 0.034 14.3 0.0 0.17 12.0 0.0 2.1 2 1 0 2 2 2 0 Helix-hairpin-helix domain FAD_binding_3 PF01494.14 gi|298675585|ref|YP_003727335.1| - 2.7e-16 59.5 0.2 1.4e-06 27.6 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|298675585|ref|YP_003727335.1| - 4.5e-11 42.2 3.3 1.7e-05 23.9 0.1 2.7 2 1 0 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|298675585|ref|YP_003727335.1| - 9.2e-09 34.4 0.1 0.00052 18.7 0.0 2.4 2 1 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|298675585|ref|YP_003727335.1| - 5e-08 33.0 0.1 1.2e-07 31.8 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|298675585|ref|YP_003727335.1| - 5.3e-08 32.2 0.5 3.9e-06 26.1 0.0 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|298675585|ref|YP_003727335.1| - 1.2e-06 27.3 0.6 5.2e-05 21.9 0.0 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|298675585|ref|YP_003727335.1| - 4.3e-06 26.0 0.1 6.4e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|298675585|ref|YP_003727335.1| - 8.6e-06 24.9 0.3 5.1e-05 22.3 0.3 2.2 2 1 0 2 2 2 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|298675585|ref|YP_003727335.1| - 2.2e-05 23.5 0.2 3.6e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|298675585|ref|YP_003727335.1| - 2.4e-05 23.3 1.3 4.4e-05 22.5 0.9 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|298675585|ref|YP_003727335.1| - 0.00012 22.2 0.0 0.00022 21.3 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|298675585|ref|YP_003727335.1| - 0.0003 20.7 0.0 0.00073 19.5 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|298675585|ref|YP_003727335.1| - 0.0039 17.5 1.1 0.16 12.3 0.0 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|298675585|ref|YP_003727335.1| - 0.019 14.5 0.3 3.2 7.2 0.0 2.7 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|298675585|ref|YP_003727335.1| - 0.056 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|298675585|ref|YP_003727335.1| - 0.088 12.6 0.0 0.26 11.0 0.0 1.8 1 0 0 1 1 1 0 ThiF family PAS_9 PF13426.1 gi|298675586|ref|YP_003727336.1| - 3.9e-29 101.0 2.9 2.7e-13 50.2 0.0 4.1 5 0 0 5 5 4 3 PAS domain HisKA_2 PF07568.7 gi|298675586|ref|YP_003727336.1| - 8.4e-29 99.2 2.0 8.4e-29 99.2 1.4 2.4 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.19 gi|298675586|ref|YP_003727336.1| - 5.2e-21 74.5 0.0 2.8e-08 33.5 0.0 4.0 3 1 1 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|298675586|ref|YP_003727336.1| - 9.6e-21 73.8 0.0 1.7e-06 28.0 0.0 4.9 4 1 1 5 5 5 3 PAS fold PAS_8 PF13188.1 gi|298675586|ref|YP_003727336.1| - 2.1e-18 65.4 0.0 1.2e-05 24.9 0.0 3.7 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|298675586|ref|YP_003727336.1| - 7.6e-11 41.7 0.1 1.8e-10 40.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|298675586|ref|YP_003727336.1| - 7.1e-07 29.2 0.0 0.0059 16.6 0.0 2.8 2 0 0 2 2 2 2 PAS fold HWE_HK PF07536.9 gi|298675586|ref|YP_003727336.1| - 1.4e-05 25.3 0.6 3.3e-05 24.2 0.1 1.9 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298675586|ref|YP_003727336.1| - 6.6e-05 22.6 0.0 0.00014 21.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|298675586|ref|YP_003727336.1| - 0.00092 18.8 0.2 0.00092 18.8 0.2 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eaf7 PF07904.8 gi|298675586|ref|YP_003727336.1| - 0.016 15.1 2.0 0.6 10.1 0.1 3.0 3 0 0 3 3 3 0 Chromatin modification-related protein EAF7 HEAT_2 PF13646.1 gi|298675588|ref|YP_003727338.1| - 1e-179 583.3 66.2 3.5e-20 72.0 0.8 12.9 1 1 13 15 15 15 15 HEAT repeats HEAT_PBS PF03130.11 gi|298675588|ref|YP_003727338.1| - 2.1e-88 281.8 4.9 2.3e-06 27.5 0.1 23.9 25 0 0 25 25 24 15 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|298675588|ref|YP_003727338.1| - 1.6e-79 254.9 1.9 0.00028 20.7 0.0 21.1 21 0 0 21 21 21 16 HEAT repeat HEAT_EZ PF13513.1 gi|298675588|ref|YP_003727338.1| - 3.2e-62 205.6 33.0 0.0006 20.2 0.0 21.6 22 1 1 23 23 23 15 HEAT-like repeat Arm PF00514.18 gi|298675588|ref|YP_003727338.1| - 1.2e-35 120.0 14.1 0.066 13.0 0.0 20.1 12 5 10 22 22 22 7 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|298675588|ref|YP_003727338.1| - 7.1e-14 52.0 16.0 0.00065 19.5 0.0 10.7 2 2 7 10 10 10 4 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|298675588|ref|YP_003727338.1| - 1.2e-10 41.5 1.3 35 4.8 0.0 10.1 6 3 5 11 11 11 0 Vacuolar 14 Fab1-binding region Aconitase_B_N PF11791.3 gi|298675588|ref|YP_003727338.1| - 8.4e-10 38.6 16.8 4.7 7.0 0.0 10.9 5 3 5 12 12 12 2 Aconitate B N-terminal domain ERAP1_C PF11838.3 gi|298675588|ref|YP_003727338.1| - 1.3e-06 27.9 23.2 0.015 14.5 0.1 7.3 2 1 3 7 7 7 3 ERAP1-like C-terminal domain DUF3385 PF11865.3 gi|298675588|ref|YP_003727338.1| - 2.8e-05 24.1 1.3 2 8.3 0.2 6.0 7 1 0 7 7 6 1 Domain of unknown function (DUF3385) DUF4042 PF13251.1 gi|298675588|ref|YP_003727338.1| - 0.00022 20.7 1.6 32 3.9 0.0 6.4 3 2 2 6 6 6 0 Domain of unknown function (DUF4042) CLASP_N PF12348.3 gi|298675588|ref|YP_003727338.1| - 0.00049 19.5 4.2 0.5 9.6 0.0 6.3 3 2 2 6 6 6 1 CLASP N terminal Imm16 PF15565.1 gi|298675588|ref|YP_003727338.1| - 0.021 14.6 9.9 6.5 6.6 0.5 6.0 4 1 2 6 6 6 0 Immunity protein 16 GlutR_dimer PF00745.15 gi|298675588|ref|YP_003727338.1| - 0.055 13.4 8.3 17 5.4 0.0 6.5 6 3 2 8 8 7 0 Glutamyl-tRNAGlu reductase, dimerisation domain CytochromB561_N PF09786.4 gi|298675588|ref|YP_003727338.1| - 0.091 11.2 4.1 2.2 6.6 0.0 2.8 3 0 0 3 3 3 0 Cytochrome B561, N terminal CHAD PF05235.9 gi|298675588|ref|YP_003727338.1| - 0.17 11.4 11.2 0.66 9.5 0.4 4.4 2 1 1 4 4 4 0 CHAD domain DUF2389 PF09493.5 gi|298675588|ref|YP_003727338.1| - 1.2 9.4 2.8 76 3.6 0.0 4.1 4 0 0 4 4 2 0 Tryptophan-rich protein (DUF2389) cobW PF02492.14 gi|298675590|ref|YP_003727340.1| - 1.5e-36 125.4 1.9 2.5e-36 124.7 1.3 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|298675590|ref|YP_003727340.1| - 6.2e-05 21.9 1.2 0.012 14.4 0.1 2.3 2 0 0 2 2 2 2 ArgK protein SRP54 PF00448.17 gi|298675590|ref|YP_003727340.1| - 0.0056 16.1 0.1 0.014 14.8 0.1 1.7 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Herpes_ori_bp PF02399.10 gi|298675590|ref|YP_003727340.1| - 0.0077 14.2 1.1 0.52 8.1 0.0 2.3 2 1 0 2 2 2 2 Origin of replication binding protein MobB PF03205.9 gi|298675590|ref|YP_003727340.1| - 0.0092 15.6 0.1 0.024 14.3 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|298675590|ref|YP_003727340.1| - 0.011 15.3 0.9 1.5 8.3 0.1 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|298675590|ref|YP_003727340.1| - 0.076 13.3 0.4 0.076 13.3 0.3 3.1 3 1 0 3 3 3 0 AAA domain CbiA PF01656.18 gi|298675590|ref|YP_003727340.1| - 0.092 12.1 0.4 0.092 12.1 0.3 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TK PF00265.13 gi|298675590|ref|YP_003727340.1| - 0.16 11.5 4.3 0.55 9.7 0.0 2.9 2 2 1 3 3 3 0 Thymidine kinase Viral_helicase1 PF01443.13 gi|298675590|ref|YP_003727340.1| - 0.24 10.8 2.1 0.56 9.6 0.2 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|298675590|ref|YP_003727340.1| - 2.3 8.1 5.3 1.4 8.8 0.1 2.7 2 1 0 2 2 2 0 AAA domain DUF4445 PF14574.1 gi|298675591|ref|YP_003727341.1| - 2.2e-110 368.7 4.1 3.3e-110 368.1 2.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4 PF00037.22 gi|298675591|ref|YP_003727341.1| - 5.8e-07 28.8 7.4 0.0025 17.3 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675591|ref|YP_003727341.1| - 5e-06 26.7 10.2 1.7e-05 25.0 7.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675591|ref|YP_003727341.1| - 9.8e-06 25.2 12.0 0.00059 19.5 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298675591|ref|YP_003727341.1| - 1.4e-05 25.7 8.9 0.0011 19.6 0.7 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|298675591|ref|YP_003727341.1| - 2.5e-05 24.4 10.9 5.9e-05 23.2 7.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675591|ref|YP_003727341.1| - 4.2e-05 23.2 10.9 0.00032 20.4 8.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675591|ref|YP_003727341.1| - 8.9e-05 22.2 8.9 0.00018 21.2 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675591|ref|YP_003727341.1| - 0.00024 21.0 9.2 0.022 14.7 0.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675591|ref|YP_003727341.1| - 0.00075 19.2 1.8 0.00075 19.2 1.2 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298675591|ref|YP_003727341.1| - 0.0033 17.6 2.6 0.0033 17.6 1.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298675591|ref|YP_003727341.1| - 0.018 15.5 13.7 0.3 11.7 2.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain DUF840 PF05801.6 gi|298675591|ref|YP_003727341.1| - 0.049 13.7 0.0 6.4 6.9 0.0 2.4 2 0 0 2 2 2 0 Lagovirus protein of unknown function (DUF840) Nsp3_PL2pro PF12124.3 gi|298675591|ref|YP_003727341.1| - 0.13 11.8 0.0 0.36 10.4 0.0 1.7 1 0 0 1 1 1 0 Coronavirus polyprotein cleavage domain Fer4_18 PF13746.1 gi|298675591|ref|YP_003727341.1| - 0.85 10.0 12.9 0.13 12.7 2.0 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675591|ref|YP_003727341.1| - 1 9.7 12.0 2 8.8 1.9 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Cpn60_TCP1 PF00118.19 gi|298675592|ref|YP_003727342.1| - 1.3e-103 347.2 8.2 1.5e-103 347.0 5.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Hydantoinase_A PF01968.13 gi|298675593|ref|YP_003727343.1| - 5.4e-75 252.1 1.5 1.6e-74 250.6 0.0 2.3 2 1 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|298675593|ref|YP_003727343.1| - 7.2e-40 136.3 5.8 1.3e-37 128.9 0.6 2.8 2 1 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|298675593|ref|YP_003727343.1| - 0.00013 20.4 3.7 0.047 12.0 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|298675593|ref|YP_003727343.1| - 0.026 13.8 0.4 1.1 8.4 0.0 2.5 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family URO-D PF01208.12 gi|298675594|ref|YP_003727344.1| - 5.7e-57 193.1 0.0 1e-55 189.0 0.0 2.2 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) B12-binding PF02310.14 gi|298675594|ref|YP_003727344.1| - 2.6e-22 78.9 0.0 1e-21 77.0 0.1 1.9 2 0 0 2 2 2 1 B12 binding domain B12-binding_2 PF02607.12 gi|298675594|ref|YP_003727344.1| - 1.4e-15 57.0 0.1 1.8e-14 53.4 0.0 2.8 3 0 0 3 3 3 1 B12 binding domain DUF1724 PF08350.5 gi|298675595|ref|YP_003727345.1| - 4e-23 80.7 0.2 7.9e-23 79.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|298675595|ref|YP_003727345.1| - 6.3e-08 32.1 0.0 1.2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|298675595|ref|YP_003727345.1| - 0.0029 17.3 0.7 0.0066 16.2 0.3 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix MEDS PF14417.1 gi|298675596|ref|YP_003727346.1| - 1.3e-35 122.2 0.1 4.1e-35 120.6 0.0 2.0 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|298675596|ref|YP_003727346.1| - 1.4e-24 85.9 0.0 2.4e-24 85.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|298675596|ref|YP_003727346.1| - 2.7e-22 78.6 0.0 2.3e-17 62.8 0.1 3.4 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|298675596|ref|YP_003727346.1| - 8.6e-21 74.2 0.0 3.5e-11 43.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|298675596|ref|YP_003727346.1| - 5e-20 72.4 0.0 1.3e-18 67.8 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS PF00989.19 gi|298675596|ref|YP_003727346.1| - 9.3e-18 64.0 0.0 7.2e-11 41.8 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|298675596|ref|YP_003727346.1| - 1.1e-10 41.5 0.0 5.2e-07 29.6 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|298675596|ref|YP_003727346.1| - 0.00021 21.0 0.0 0.00071 19.3 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|298675596|ref|YP_003727346.1| - 0.00028 20.8 0.0 0.0013 18.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|298675596|ref|YP_003727346.1| - 0.0016 18.1 0.0 0.0053 16.4 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|298675596|ref|YP_003727346.1| - 0.018 15.3 0.0 0.092 13.0 0.0 2.3 2 0 0 2 2 2 0 PAS domain HisKA PF00512.20 gi|298675596|ref|YP_003727346.1| - 0.28 11.1 4.5 0.23 11.5 0.2 2.8 4 0 0 4 4 4 0 His Kinase A (phospho-acceptor) domain OrfB_IS605 PF01385.14 gi|298675597|ref|YP_003727347.1| - 7.2e-46 156.4 0.5 7.2e-46 156.4 0.4 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675597|ref|YP_003727347.1| - 7.1e-09 35.2 0.3 3.6e-08 32.9 0.1 2.3 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298675597|ref|YP_003727347.1| - 0.022 14.3 0.5 0.055 13.0 0.3 1.7 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298675597|ref|YP_003727347.1| - 0.053 13.6 0.0 0.14 12.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0081) dUTPase PF00692.14 gi|298675598|ref|YP_003727348.1| - 8.3e-11 41.4 0.0 1.2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|298675598|ref|YP_003727348.1| - 0.011 14.1 0.0 0.022 13.1 0.0 1.5 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DeoC PF01791.4 gi|298675599|ref|YP_003727349.1| - 2.6e-54 184.0 0.0 3.1e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.19 gi|298675599|ref|YP_003727349.1| - 0.0047 16.3 0.2 0.0089 15.4 0.1 1.4 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Peptidase_M20 PF01546.23 gi|298675599|ref|YP_003727349.1| - 0.043 13.3 0.1 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 tRNA-synt_2b PF00587.20 gi|298675600|ref|YP_003727350.1| - 7.7e-59 198.1 0.0 1.3e-58 197.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|298675600|ref|YP_003727350.1| - 2.1e-22 78.8 0.1 5.2e-22 77.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain CpXC PF14353.1 gi|298675600|ref|YP_003727350.1| - 0.041 13.8 0.3 0.1 12.5 0.2 1.7 1 0 0 1 1 1 0 CpXC protein tRNA-synt_2 PF00152.15 gi|298675600|ref|YP_003727350.1| - 0.057 12.1 3.0 5.9 5.5 0.0 3.3 3 1 1 4 4 4 0 tRNA synthetases class II (D, K and N) Zn-ribbon_8 PF09723.5 gi|298675600|ref|YP_003727350.1| - 0.07 13.0 1.2 13 5.8 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain ERCC4 PF02732.10 gi|298675601|ref|YP_003727351.1| - 8.2e-28 96.9 0.2 2.1e-27 95.6 0.1 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|298675601|ref|YP_003727351.1| - 1.4e-18 66.4 0.0 4.6e-18 64.8 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|298675601|ref|YP_003727351.1| - 2.8e-18 65.9 0.0 1.2e-17 63.9 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|298675601|ref|YP_003727351.1| - 2e-13 50.5 0.0 1.3e-12 47.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|298675601|ref|YP_003727351.1| - 2.9e-10 39.8 0.0 1.1e-09 37.9 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|298675601|ref|YP_003727351.1| - 1.4e-08 34.7 0.0 4.9e-08 33.0 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|298675601|ref|YP_003727351.1| - 1.9e-06 27.2 0.5 5.4e-05 22.6 0.0 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|298675601|ref|YP_003727351.1| - 0.00023 21.3 0.0 0.0015 18.7 0.0 2.4 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|298675601|ref|YP_003727351.1| - 0.023 14.8 0.2 0.099 12.8 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain AAA_19 PF13245.1 gi|298675601|ref|YP_003727351.1| - 0.03 14.0 0.3 0.1 12.3 0.2 1.9 1 0 0 1 1 1 0 Part of AAA domain COX6A PF02046.10 gi|298675601|ref|YP_003727351.1| - 0.032 14.1 0.0 0.078 12.8 0.0 1.6 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIa Auto_anti-p27 PF06677.7 gi|298675602|ref|YP_003727352.1| - 2.7e-16 59.0 2.6 4.5e-16 58.3 1.8 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|298675602|ref|YP_003727352.1| - 0.0077 16.0 2.7 0.015 15.1 1.9 1.4 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|298675602|ref|YP_003727352.1| - 0.033 13.9 1.1 1.6 8.4 0.0 2.7 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|298675602|ref|YP_003727352.1| - 0.08 12.2 0.3 0.23 10.7 0.2 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.1 gi|298675602|ref|YP_003727352.1| - 0.08 12.4 0.6 0.13 11.7 0.4 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF3279 PF11682.3 gi|298675602|ref|YP_003727352.1| - 0.091 12.3 0.2 0.18 11.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) DUF2072 PF09845.4 gi|298675602|ref|YP_003727352.1| - 0.098 12.5 3.5 0.19 11.6 2.5 1.6 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-ribbon_3 PF13248.1 gi|298675602|ref|YP_003727352.1| - 5.1 6.4 5.7 7.3 5.9 2.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain UPF0147 PF03685.8 gi|298675603|ref|YP_003727353.1| - 1.3e-37 127.5 2.1 1.4e-37 127.3 1.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|298675603|ref|YP_003727353.1| - 0.00025 21.1 0.2 0.02 15.0 0.1 2.1 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0253) YtzH PF14165.1 gi|298675603|ref|YP_003727353.1| - 0.033 14.3 0.8 0.11 12.7 0.3 1.8 1 1 1 2 2 2 0 YtzH-like protein DUF445 PF04286.7 gi|298675603|ref|YP_003727353.1| - 0.043 13.3 0.1 0.044 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Translin PF01997.11 gi|298675604|ref|YP_003727354.1| - 3.1e-34 118.3 0.0 3.8e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 Translin family tRNA-synt_2d PF01409.15 gi|298675605|ref|YP_003727355.1| - 5.9e-54 182.8 0.0 3.7e-49 167.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|298675605|ref|YP_003727355.1| - 8.2e-05 22.2 0.0 0.00024 20.7 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Endonuclease_5 PF04493.9 gi|298675606|ref|YP_003727356.1| - 2.2e-54 183.9 0.0 2.6e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|298675606|ref|YP_003727356.1| - 0.022 13.8 0.2 0.36 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF99 DUF169 PF02596.10 gi|298675607|ref|YP_003727357.1| - 3.1e-55 186.9 0.0 3.7e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 DUF473 PF04322.7 gi|298675608|ref|YP_003727358.1| - 4.2e-42 142.5 0.7 4.9e-42 142.3 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.4 gi|298675609|ref|YP_003727359.1| - 7.9e-52 176.2 0.3 9.7e-52 175.9 0.2 1.0 1 0 0 1 1 1 1 PAC2 family GHMP_kinases_N PF00288.21 gi|298675609|ref|YP_003727359.1| - 0.092 12.8 0.2 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 GHMP kinases N terminal domain DUF3937 PF13073.1 gi|298675610|ref|YP_003727360.1| - 0.018 14.9 0.2 0.02 14.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3937) DUF3951 PF13131.1 gi|298675610|ref|YP_003727360.1| - 0.024 14.3 0.3 0.027 14.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3951) DUF1043 PF06295.7 gi|298675610|ref|YP_003727360.1| - 0.042 13.4 0.0 0.044 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) Herpes_UL45 PF05473.7 gi|298675610|ref|YP_003727360.1| - 0.079 12.3 0.1 0.079 12.3 0.0 1.2 1 0 0 1 1 1 0 UL45 protein MTD PF01993.13 gi|298675611|ref|YP_003727361.1| - 2.5e-98 328.5 0.5 2.8e-98 328.3 0.4 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase HAD PF12710.2 gi|298675612|ref|YP_003727362.1| - 1.4e-14 54.6 0.1 2e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|298675612|ref|YP_003727362.1| - 2.4e-14 54.2 0.8 1e-12 48.9 0.5 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|298675612|ref|YP_003727362.1| - 3e-12 46.6 0.2 1.5e-10 41.1 0.0 2.4 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|298675612|ref|YP_003727362.1| - 3.3e-11 42.8 0.1 2.1e-06 27.0 0.0 2.2 1 1 1 2 2 2 2 Putative Phosphatase HAD_2 PF13419.1 gi|298675612|ref|YP_003727362.1| - 4.6e-09 36.7 0.0 8.1e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|298675612|ref|YP_003727362.1| - 0.024 14.3 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like S6PP PF05116.8 gi|298675612|ref|YP_003727362.1| - 0.1 11.8 0.0 7 5.8 0.0 2.2 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DUF705 PF05152.7 gi|298675612|ref|YP_003727362.1| - 0.11 11.4 0.2 0.26 10.2 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF705) TBPIP PF07106.8 gi|298675613|ref|YP_003727363.1| - 0.14 11.7 57.2 0.096 12.2 10.8 4.0 1 1 3 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Acyl-CoA_dh_C PF12806.2 gi|298675613|ref|YP_003727363.1| - 1 9.2 11.0 2.6 7.9 1.2 3.2 2 1 1 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like Reo_sigmaC PF04582.7 gi|298675613|ref|YP_003727363.1| - 1.3 8.1 6.9 3.3 6.7 0.3 2.2 1 1 0 2 2 2 0 Reovirus sigma C capsid protein Filament PF00038.16 gi|298675613|ref|YP_003727363.1| - 1.8 7.9 54.0 9.6 5.5 37.5 1.9 1 1 0 1 1 1 0 Intermediate filament protein ERM PF00769.14 gi|298675613|ref|YP_003727363.1| - 2.4 7.6 61.5 19 4.7 24.8 2.4 1 1 2 3 3 3 0 Ezrin/radixin/moesin family MCPsignal PF00015.16 gi|298675613|ref|YP_003727363.1| - 2.6 7.5 25.2 0.23 10.9 1.4 3.1 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|298675613|ref|YP_003727363.1| - 3.5 7.3 39.6 1.6 8.5 9.6 3.8 1 1 4 5 5 5 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|298675613|ref|YP_003727363.1| - 5.3 7.1 61.7 0.068 13.1 14.4 4.0 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF2935 PF11155.3 gi|298675613|ref|YP_003727363.1| - 6.2 6.9 35.3 1.7 8.7 4.3 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF2935) Laminin_I PF06008.9 gi|298675613|ref|YP_003727363.1| - 7 5.8 48.9 0.74 9.0 15.9 2.4 1 1 0 2 2 2 0 Laminin Domain I Radical_SAM PF04055.16 gi|298675614|ref|YP_003727364.1| - 2e-20 73.6 0.0 3.7e-20 72.7 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|298675614|ref|YP_003727364.1| - 1.8e-06 28.1 0.1 4.2e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|298675614|ref|YP_003727364.1| - 1.8e-05 24.8 0.0 4.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298675614|ref|YP_003727364.1| - 0.00089 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1906 PF08924.6 gi|298675614|ref|YP_003727364.1| - 0.034 14.0 0.0 0.08 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DAO PF01266.19 gi|298675615|ref|YP_003727365.1| - 1e-12 47.7 0.0 3.6e-08 32.6 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|298675615|ref|YP_003727365.1| - 4.4e-11 41.8 0.2 5e-07 28.5 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|298675615|ref|YP_003727365.1| - 6.7e-08 31.9 0.0 0.00035 19.7 0.0 2.4 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|298675615|ref|YP_003727365.1| - 9.3e-07 28.2 0.0 1.8e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|298675615|ref|YP_003727365.1| - 1.6e-06 28.1 0.1 3.2e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|298675615|ref|YP_003727365.1| - 3.1e-06 26.3 0.0 1.8e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|298675615|ref|YP_003727365.1| - 5.5e-06 26.5 0.0 9.2e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|298675615|ref|YP_003727365.1| - 2.6e-05 24.1 0.1 0.00037 20.4 0.0 2.6 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|298675615|ref|YP_003727365.1| - 2.6e-05 23.2 0.1 9.1e-05 21.4 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|298675615|ref|YP_003727365.1| - 0.00024 20.0 0.1 0.00054 18.9 0.1 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|298675615|ref|YP_003727365.1| - 0.0005 19.2 0.1 0.0011 18.0 0.0 1.7 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|298675615|ref|YP_003727365.1| - 0.00091 19.5 0.1 0.13 12.7 0.0 3.0 4 0 0 4 4 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|298675615|ref|YP_003727365.1| - 0.22 10.1 0.6 4.3 5.8 0.0 2.1 1 1 1 2 2 2 0 Tryptophan halogenase UbiA PF01040.13 gi|298675616|ref|YP_003727366.1| - 1.8e-33 115.8 19.0 2.3e-33 115.5 13.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family TGT PF01702.13 gi|298675617|ref|YP_003727367.1| - 1.3e-54 185.0 0.0 1.7e-54 184.6 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase CLTH PF10607.4 gi|298675617|ref|YP_003727367.1| - 0.075 12.7 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 CTLH/CRA C-terminal to LisH motif domain eIF-1a PF01176.14 gi|298675618|ref|YP_003727368.1| - 9.8e-20 69.7 0.6 1.4e-19 69.2 0.4 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|298675619|ref|YP_003727369.1| - 2.6e-62 209.5 0.2 3.8e-62 208.9 0.2 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|298675619|ref|YP_003727369.1| - 2e-05 23.8 0.0 2.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|298675619|ref|YP_003727369.1| - 0.00021 20.4 0.0 0.001 18.1 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|298675619|ref|YP_003727369.1| - 0.0011 18.7 0.0 0.008 15.9 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|298675619|ref|YP_003727369.1| - 0.02 13.9 0.0 0.029 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein tyrosine kinase Rho_RNA_bind PF07497.7 gi|298675619|ref|YP_003727369.1| - 0.021 14.4 0.0 0.05 13.2 0.0 1.6 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain Choline_kinase PF01633.15 gi|298675619|ref|YP_003727369.1| - 0.022 14.3 0.1 0.075 12.5 0.1 1.8 2 0 0 2 2 2 0 Choline/ethanolamine kinase Fructosamin_kin PF03881.9 gi|298675619|ref|YP_003727369.1| - 0.048 12.6 0.0 0.094 11.6 0.0 1.5 1 1 1 2 2 2 0 Fructosamine kinase KH_1 PF00013.24 gi|298675620|ref|YP_003727370.1| - 3e-13 49.2 13.0 3e-08 33.1 0.5 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|298675620|ref|YP_003727370.1| - 0.00087 18.8 7.9 0.11 12.0 0.2 3.2 2 2 1 3 3 3 2 KH domain KH_3 PF13014.1 gi|298675620|ref|YP_003727370.1| - 0.0012 18.3 9.3 0.041 13.5 0.1 3.3 3 0 0 3 3 3 2 KH domain KH_4 PF13083.1 gi|298675620|ref|YP_003727370.1| - 0.04 13.5 3.5 1.9 8.1 0.9 3.0 2 1 1 3 3 3 0 KH domain Phe_tRNA-synt_N PF02912.13 gi|298675620|ref|YP_003727370.1| - 0.048 13.3 0.2 0.58 9.9 0.0 2.4 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain DUF1614 PF07758.6 gi|298675621|ref|YP_003727371.1| - 7.1e-23 81.2 12.6 1e-22 80.7 8.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) KaiC PF06745.8 gi|298675622|ref|YP_003727372.1| - 8.3e-39 133.0 0.0 2e-38 131.7 0.0 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|298675622|ref|YP_003727372.1| - 1.1e-13 51.0 0.0 1.7e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|298675622|ref|YP_003727372.1| - 2.3e-08 33.4 0.0 3e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|298675622|ref|YP_003727372.1| - 7.9e-07 27.7 0.0 0.0039 15.5 0.0 2.1 1 1 1 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.10 gi|298675622|ref|YP_003727372.1| - 1.3e-06 27.4 0.0 2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|298675622|ref|YP_003727372.1| - 8.5e-06 25.4 0.0 1.7e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|298675622|ref|YP_003727372.1| - 2e-05 24.4 0.0 6.2e-05 22.9 0.0 2.0 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|298675622|ref|YP_003727372.1| - 5.6e-05 22.6 0.0 0.00012 21.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|298675622|ref|YP_003727372.1| - 5.9e-05 23.3 0.2 0.00074 19.8 0.0 2.8 3 1 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|298675622|ref|YP_003727372.1| - 0.00022 22.0 0.3 0.00044 21.0 0.1 1.9 2 1 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|298675622|ref|YP_003727372.1| - 0.00081 19.0 0.0 0.0022 17.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|298675622|ref|YP_003727372.1| - 0.00089 19.4 0.0 0.0016 18.6 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298675622|ref|YP_003727372.1| - 0.0014 18.8 0.0 0.0046 17.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|298675622|ref|YP_003727372.1| - 0.0014 17.5 0.0 0.0022 16.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|298675622|ref|YP_003727372.1| - 0.002 17.8 0.0 0.0048 16.6 0.0 1.7 1 0 0 1 1 1 1 NTPase DUF2075 PF09848.4 gi|298675622|ref|YP_003727372.1| - 0.0025 16.8 0.0 0.0033 16.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|298675622|ref|YP_003727372.1| - 0.0069 15.9 0.0 0.028 14.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|298675622|ref|YP_003727372.1| - 0.0075 16.4 0.0 0.046 13.8 0.0 2.2 1 1 0 1 1 1 1 RNA helicase AAA_33 PF13671.1 gi|298675622|ref|YP_003727372.1| - 0.0075 16.1 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|298675622|ref|YP_003727372.1| - 0.0077 15.6 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|298675622|ref|YP_003727372.1| - 0.0094 15.9 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|298675622|ref|YP_003727372.1| - 0.01 15.5 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|298675622|ref|YP_003727372.1| - 0.014 15.1 0.0 0.037 13.7 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B PPV_E1_C PF00519.12 gi|298675622|ref|YP_003727372.1| - 0.014 13.9 0.1 0.037 12.6 0.0 1.6 2 0 0 2 2 2 0 Papillomavirus helicase AAA_28 PF13521.1 gi|298675622|ref|YP_003727372.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain MEDS PF14417.1 gi|298675622|ref|YP_003727372.1| - 0.024 13.7 0.0 0.039 13.0 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain NACHT PF05729.7 gi|298675622|ref|YP_003727372.1| - 0.028 14.0 0.0 0.052 13.2 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.21 gi|298675622|ref|YP_003727372.1| - 0.03 13.8 0.0 0.085 12.3 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain cobW PF02492.14 gi|298675622|ref|YP_003727372.1| - 0.043 13.2 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|298675622|ref|YP_003727372.1| - 0.047 13.4 0.0 0.096 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HORMA PF02301.13 gi|298675622|ref|YP_003727372.1| - 0.06 12.8 0.1 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 HORMA domain Thymidylate_kin PF02223.12 gi|298675622|ref|YP_003727372.1| - 0.062 12.6 0.0 0.28 10.5 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase AAA_32 PF13654.1 gi|298675622|ref|YP_003727372.1| - 0.078 11.6 0.0 0.14 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad51 PF08423.6 gi|298675622|ref|YP_003727372.1| - 0.094 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Rad51 Amidohydro_4 PF13147.1 gi|298675623|ref|YP_003727373.1| - 8.8e-25 88.2 0.0 1.1e-24 87.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|298675623|ref|YP_003727373.1| - 3.5e-20 72.9 0.0 9.3e-20 71.5 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|298675623|ref|YP_003727373.1| - 5.9e-12 45.2 0.4 1.9e-11 43.5 0.3 2.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|298675623|ref|YP_003727373.1| - 2.1e-05 23.9 0.0 0.0024 17.1 0.0 2.5 1 1 1 2 2 2 2 Amidohydrolase family OrfB_IS605 PF01385.14 gi|298675624|ref|YP_003727374.1| - 5e-45 153.6 7.5 7.9e-45 153.0 5.2 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675624|ref|YP_003727374.1| - 1.4e-23 82.2 0.2 2.8e-23 81.3 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675624|ref|YP_003727374.1| - 6.4e-20 70.2 1.8 1.6e-19 68.9 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Occludin_ELL PF07303.8 gi|298675624|ref|YP_003727374.1| - 0.37 11.5 8.3 0.18 12.5 2.0 2.4 2 0 0 2 2 2 0 Occludin homology domain PhoU PF01895.14 gi|298675625|ref|YP_003727375.1| - 5.3e-36 122.9 10.7 5.6e-20 71.5 0.2 2.1 2 0 0 2 2 2 2 PhoU domain DUF1725 PF08333.6 gi|298675625|ref|YP_003727375.1| - 0.053 12.8 1.4 0.13 11.5 1.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1725) ArsC PF03960.10 gi|298675625|ref|YP_003727375.1| - 0.52 10.4 4.9 8.5 6.5 0.5 3.0 2 1 0 2 2 2 0 ArsC family DNA_pol_B PF00136.16 gi|298675626|ref|YP_003727376.1| - 1.4e-116 390.0 0.1 2e-116 389.5 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|298675626|ref|YP_003727376.1| - 5.9e-60 202.8 0.9 1e-59 202.0 0.6 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|298675626|ref|YP_003727376.1| - 1.9e-05 24.5 0.0 5.9e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|298675626|ref|YP_003727376.1| - 0.00013 21.5 0.1 0.00048 19.7 0.0 1.9 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB PAS_9 PF13426.1 gi|298675627|ref|YP_003727377.1| - 1.3e-48 163.7 3.1 1.1e-17 64.2 0.0 3.9 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|298675627|ref|YP_003727377.1| - 5.6e-39 132.4 0.2 6.9e-14 51.5 0.0 3.7 3 1 0 3 3 3 3 PAS fold HisKA_2 PF07568.7 gi|298675627|ref|YP_003727377.1| - 3.5e-31 106.8 2.6 3.5e-31 106.8 1.8 2.6 3 0 0 3 3 3 1 Histidine kinase PAS_4 PF08448.5 gi|298675627|ref|YP_003727377.1| - 2.3e-29 101.6 0.0 3.6e-09 36.6 0.0 3.7 3 1 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|298675627|ref|YP_003727377.1| - 3.9e-23 80.4 0.0 2e-08 33.7 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|298675627|ref|YP_003727377.1| - 2.5e-14 53.1 0.0 0.00011 22.2 0.0 3.6 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|298675627|ref|YP_003727377.1| - 1.1e-12 47.5 0.4 3.9e-12 45.8 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|298675627|ref|YP_003727377.1| - 2.4e-11 43.8 0.1 5.3e-06 26.6 0.0 3.8 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|298675627|ref|YP_003727377.1| - 2.2e-07 30.6 0.0 4.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|298675627|ref|YP_003727377.1| - 3.9e-06 27.1 0.2 1.3e-05 25.5 0.2 1.9 1 0 0 1 1 1 1 HWE histidine kinase PAS_7 PF12860.2 gi|298675627|ref|YP_003727377.1| - 4.8e-06 26.5 1.3 0.018 15.0 0.0 4.9 3 3 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|298675627|ref|YP_003727377.1| - 0.009 15.6 0.3 0.027 14.1 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vac14_Fab1_bd PF12755.2 gi|298675627|ref|YP_003727377.1| - 0.011 16.1 0.7 0.086 13.2 0.2 2.5 2 0 0 2 2 2 0 Vacuolar 14 Fab1-binding region HTH_11 PF08279.7 gi|298675629|ref|YP_003727379.1| - 0.00066 19.2 0.1 0.00099 18.7 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|298675629|ref|YP_003727379.1| - 0.0026 17.7 0.1 0.0038 17.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|298675629|ref|YP_003727379.1| - 0.0029 16.9 0.1 0.0048 16.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|298675629|ref|YP_003727379.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|298675629|ref|YP_003727379.1| - 0.026 14.6 0.1 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Phage_GP20 PF06810.6 gi|298675629|ref|YP_003727379.1| - 0.05 13.0 1.4 0.063 12.7 1.0 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 ArsR PF09824.4 gi|298675629|ref|YP_003727379.1| - 0.077 12.3 0.1 0.098 11.9 0.1 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator Sec2p PF06428.6 gi|298675629|ref|YP_003727379.1| - 0.082 12.7 0.3 0.1 12.4 0.2 1.1 1 0 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF2009 PF09418.5 gi|298675629|ref|YP_003727379.1| - 0.093 11.4 0.3 0.088 11.5 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2009) HTH_DeoR PF08220.7 gi|298675629|ref|YP_003727379.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF1699 PF08004.6 gi|298675630|ref|YP_003727380.1| - 3.2e-58 194.9 2.0 3.6e-58 194.7 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Metalloenzyme PF01676.13 gi|298675630|ref|YP_003727380.1| - 0.035 13.4 0.1 0.04 13.3 0.1 1.1 1 0 0 1 1 1 0 Metalloenzyme superfamily Molydop_binding PF01568.16 gi|298675631|ref|YP_003727381.1| - 7.9e-15 54.6 0.0 1e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|298675631|ref|YP_003727381.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Molybdopterin PF00384.17 gi|298675632|ref|YP_003727382.1| - 8.5e-15 54.4 0.0 2.5e-14 52.8 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase SpoVIF PF14069.1 gi|298675632|ref|YP_003727382.1| - 0.041 13.6 0.3 4.5 7.0 0.0 2.8 2 0 0 2 2 2 0 Stage VI sporulation protein F F_actin_bind PF08919.5 gi|298675632|ref|YP_003727382.1| - 0.062 13.0 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 F-actin binding Molybdop_Fe4S4 PF04879.11 gi|298675632|ref|YP_003727382.1| - 0.16 11.7 0.5 0.42 10.4 0.4 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Amidohydro_3 PF07969.6 gi|298675633|ref|YP_003727383.1| - 4.8e-55 187.4 0.0 5.7e-55 187.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|298675633|ref|YP_003727383.1| - 2.2e-07 30.6 0.1 1.4e-06 27.9 0.0 2.4 2 0 0 2 2 2 1 Amidohydrolase GXGXG PF01493.14 gi|298675634|ref|YP_003727384.1| - 1.9e-32 111.9 21.4 2.9e-32 111.3 14.8 1.3 1 0 0 1 1 1 1 GXGXG motif SprB PF13573.1 gi|298675635|ref|YP_003727385.1| - 0.39 10.3 2.8 0.57 9.8 0.8 2.2 1 1 1 2 2 2 0 SprB repeat S-layer PF07752.6 gi|298675636|ref|YP_003727386.1| - 1.6e-111 371.6 44.5 8.3e-56 189.0 14.2 2.4 2 0 0 2 2 2 2 S-layer protein PKD PF00801.15 gi|298675636|ref|YP_003727386.1| - 1.8e-27 94.8 29.3 5.4e-15 54.9 2.2 4.9 5 1 0 5 5 5 2 PKD domain FabA PF07977.8 gi|298675636|ref|YP_003727386.1| - 0.037 13.5 0.0 12 5.4 0.0 2.4 2 0 0 2 2 2 0 FabA-like domain IlvN PF07991.7 gi|298675636|ref|YP_003727386.1| - 0.1 11.9 0.0 19 4.6 0.0 2.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain KaiC PF06745.8 gi|298675637|ref|YP_003727387.1| - 7.6e-71 237.8 0.5 8.6e-71 237.6 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|298675637|ref|YP_003727387.1| - 4.1e-08 32.8 0.0 6e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|298675637|ref|YP_003727387.1| - 0.00024 19.5 0.1 0.0003 19.2 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|298675637|ref|YP_003727387.1| - 0.04 12.8 0.0 0.072 11.9 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Exonuc_VII_L PF02601.10 gi|298675638|ref|YP_003727388.1| - 7.6e-82 275.0 1.2 1.4e-72 244.6 0.4 2.2 1 1 1 2 2 2 2 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|298675638|ref|YP_003727388.1| - 1.3e-33 114.7 0.1 3.4e-33 113.4 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|298675638|ref|YP_003727388.1| - 8e-07 28.8 0.3 5.5e-06 26.1 0.0 2.5 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain RbsD_FucU PF05025.8 gi|298675638|ref|YP_003727388.1| - 0.0097 16.2 0.2 1.7 8.9 0.0 2.5 2 0 0 2 2 2 1 RbsD / FucU transport protein family V-SNARE PF05008.10 gi|298675638|ref|YP_003727388.1| - 0.038 14.1 2.3 0.13 12.4 1.6 2.0 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus NEP PF10167.4 gi|298675638|ref|YP_003727388.1| - 0.04 13.6 4.8 0.027 14.1 1.5 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein DUF1508 PF07411.7 gi|298675638|ref|YP_003727388.1| - 0.075 12.4 0.0 0.28 10.6 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1508) Exonuc_VII_S PF02609.11 gi|298675639|ref|YP_003727389.1| - 1.6e-21 75.8 5.8 2e-21 75.4 4.0 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit ParB PF08775.5 gi|298675639|ref|YP_003727389.1| - 0.019 15.2 2.1 0.022 15.0 1.5 1.1 1 0 0 1 1 1 0 ParB family DUF4200 PF13863.1 gi|298675639|ref|YP_003727389.1| - 0.021 14.8 5.9 0.024 14.5 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF2951 PF11166.3 gi|298675639|ref|YP_003727389.1| - 0.021 14.6 3.9 0.019 14.8 2.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2951) DivIC PF04977.10 gi|298675639|ref|YP_003727389.1| - 0.034 13.6 0.8 0.034 13.6 0.6 2.0 1 1 1 2 2 2 0 Septum formation initiator FH2 PF02181.18 gi|298675639|ref|YP_003727389.1| - 0.037 12.9 3.0 0.042 12.7 2.1 1.0 1 0 0 1 1 1 0 Formin Homology 2 Domain bZIP_1 PF00170.16 gi|298675639|ref|YP_003727389.1| - 0.038 13.9 6.0 0.54 10.2 0.2 2.1 1 1 1 2 2 2 0 bZIP transcription factor Leu_zip PF15294.1 gi|298675639|ref|YP_003727389.1| - 0.066 12.3 5.1 0.076 12.1 3.5 1.0 1 0 0 1 1 1 0 Leucine zipper HR1 PF02185.11 gi|298675639|ref|YP_003727389.1| - 0.07 12.8 3.0 0.12 12.1 2.1 1.4 1 1 0 1 1 1 0 Hr1 repeat TMPIT PF07851.8 gi|298675639|ref|YP_003727389.1| - 0.1 11.6 1.5 0.11 11.5 1.0 1.0 1 0 0 1 1 1 0 TMPIT-like protein Phage_GPO PF05929.6 gi|298675639|ref|YP_003727389.1| - 0.13 11.4 1.1 0.14 11.3 0.8 1.0 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Syntaxin-6_N PF09177.6 gi|298675639|ref|YP_003727389.1| - 0.2 12.0 2.0 0.29 11.5 1.4 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF4164 PF13747.1 gi|298675639|ref|YP_003727389.1| - 0.22 11.6 1.8 5.5 7.1 1.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) Kinetocho_Slk19 PF12709.2 gi|298675639|ref|YP_003727389.1| - 0.45 10.6 5.6 3.8 7.6 0.7 2.1 1 1 1 2 2 2 0 Central kinetochore-associated COG2 PF06148.6 gi|298675639|ref|YP_003727389.1| - 0.46 10.3 4.5 1.4 8.7 1.5 1.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Mto2_bdg PF12808.2 gi|298675639|ref|YP_003727389.1| - 0.58 10.3 2.5 0.83 9.8 0.4 2.0 2 0 0 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region BLOC1_2 PF10046.4 gi|298675639|ref|YP_003727389.1| - 0.68 10.1 6.4 4.8 7.3 0.2 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2262 PF10020.4 gi|298675639|ref|YP_003727389.1| - 0.73 10.0 7.6 2.1 8.5 0.4 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2262) SH3BP5 PF05276.9 gi|298675639|ref|YP_003727389.1| - 1.1 8.5 5.6 1.2 8.4 3.9 1.0 1 0 0 1 1 1 0 SH3 domain-binding protein 5 (SH3BP5) YvrJ PF12841.2 gi|298675639|ref|YP_003727389.1| - 1.1 8.6 7.1 6.1 6.2 1.4 2.2 2 0 0 2 2 2 0 YvrJ protein family IncA PF04156.9 gi|298675639|ref|YP_003727389.1| - 1.7 8.1 5.9 7.7 6.0 4.1 1.8 1 1 0 1 1 1 0 IncA protein bZIP_2 PF07716.10 gi|298675639|ref|YP_003727389.1| - 2.2 8.1 5.4 4 7.3 0.7 2.1 2 0 0 2 2 2 0 Basic region leucine zipper DUF4635 PF15466.1 gi|298675639|ref|YP_003727389.1| - 3.8 6.8 6.5 2.4 7.4 1.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) KaiC PF06745.8 gi|298675640|ref|YP_003727390.1| - 4.6e-81 271.2 2.2 1.4e-51 174.7 0.4 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|298675640|ref|YP_003727390.1| - 7.1e-13 48.3 0.0 1.9e-05 24.1 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|298675640|ref|YP_003727390.1| - 3.9e-08 32.9 0.0 0.0024 17.5 0.0 2.4 2 0 0 2 2 2 2 Part of AAA domain DnaB_C PF03796.10 gi|298675640|ref|YP_003727390.1| - 6.7e-08 31.7 0.2 0.00051 19.0 0.0 2.6 3 0 0 3 3 2 2 DnaB-like helicase C terminal domain GvpD PF07088.6 gi|298675640|ref|YP_003727390.1| - 1.6e-06 26.7 0.2 0.022 13.1 0.0 3.2 3 0 0 3 3 3 2 GvpD gas vesicle protein Sigma54_activat PF00158.21 gi|298675640|ref|YP_003727390.1| - 2e-06 27.3 0.0 0.0061 16.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|298675640|ref|YP_003727390.1| - 3.2e-06 27.4 1.8 0.0019 18.4 0.0 3.2 3 1 0 3 3 2 1 AAA domain RecA PF00154.16 gi|298675640|ref|YP_003727390.1| - 5.6e-06 25.6 0.0 0.0079 15.2 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|298675640|ref|YP_003727390.1| - 9.2e-06 25.8 0.0 0.12 12.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|298675640|ref|YP_003727390.1| - 2.3e-05 24.2 0.2 0.014 15.3 0.0 3.0 2 2 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|298675640|ref|YP_003727390.1| - 2.9e-05 23.2 0.0 0.14 11.0 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|298675640|ref|YP_003727390.1| - 4e-05 23.6 0.0 0.019 14.9 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|298675640|ref|YP_003727390.1| - 6e-05 22.7 0.1 0.19 11.3 0.0 2.4 2 0 0 2 2 2 2 NACHT domain DEAD PF00270.24 gi|298675640|ref|YP_003727390.1| - 8.9e-05 22.0 0.1 0.29 10.6 0.0 2.5 2 1 0 2 2 2 2 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|298675640|ref|YP_003727390.1| - 8.9e-05 21.9 0.2 0.11 11.8 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein T2SE PF00437.15 gi|298675640|ref|YP_003727390.1| - 9.8e-05 21.3 0.2 0.25 10.1 0.1 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_10 PF12846.2 gi|298675640|ref|YP_003727390.1| - 0.00013 21.5 0.0 0.019 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain ResIII PF04851.10 gi|298675640|ref|YP_003727390.1| - 0.00029 20.7 0.0 1 9.1 0.0 2.7 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PAXNEB PF05625.6 gi|298675640|ref|YP_003727390.1| - 0.00032 19.6 0.7 0.34 9.7 0.0 3.1 3 0 0 3 3 3 1 PAXNEB protein DAP3 PF10236.4 gi|298675640|ref|YP_003727390.1| - 0.0012 17.8 0.0 1.5 7.6 0.0 2.4 2 0 0 2 2 2 2 Mitochondrial ribosomal death-associated protein 3 AAA_5 PF07728.9 gi|298675640|ref|YP_003727390.1| - 0.0013 18.5 0.5 1.2 8.8 0.0 2.8 3 1 0 3 3 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|298675640|ref|YP_003727390.1| - 0.0026 17.9 0.1 0.55 10.4 0.0 2.9 3 0 0 3 3 2 1 RNA helicase AAA_17 PF13207.1 gi|298675640|ref|YP_003727390.1| - 0.003 18.3 2.2 1 10.1 0.2 3.1 2 2 0 2 2 2 1 AAA domain Zot PF05707.7 gi|298675640|ref|YP_003727390.1| - 0.0033 16.9 0.0 0.48 9.8 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA PF00004.24 gi|298675640|ref|YP_003727390.1| - 0.0041 17.3 0.5 2.6 8.2 0.2 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|298675640|ref|YP_003727390.1| - 0.0065 15.9 0.0 0.029 13.7 0.0 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.4 gi|298675640|ref|YP_003727390.1| - 0.0065 15.1 0.1 0.1 11.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain ATP-synt_ab PF00006.20 gi|298675640|ref|YP_003727390.1| - 0.0071 15.8 0.0 0.5 9.8 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.11 gi|298675640|ref|YP_003727390.1| - 0.012 14.8 0.4 4 6.6 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein ArsA_ATPase PF02374.10 gi|298675640|ref|YP_003727390.1| - 0.017 14.1 0.0 0.046 12.7 0.0 1.8 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_30 PF13604.1 gi|298675640|ref|YP_003727390.1| - 0.019 14.5 0.0 1.4 8.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|298675640|ref|YP_003727390.1| - 0.022 14.3 2.1 1.4 8.4 0.5 2.9 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|298675640|ref|YP_003727390.1| - 0.022 14.2 0.0 0.056 12.8 0.0 1.7 2 0 0 2 2 1 0 SRP54-type protein, GTPase domain RuvB_N PF05496.7 gi|298675640|ref|YP_003727390.1| - 0.025 13.6 0.2 0.65 9.0 0.0 2.7 3 0 0 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus MobB PF03205.9 gi|298675640|ref|YP_003727390.1| - 0.025 14.2 1.3 0.11 12.1 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|298675640|ref|YP_003727390.1| - 0.035 13.7 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 1 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|298675640|ref|YP_003727390.1| - 0.037 13.4 0.8 7.7 5.9 0.2 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|298675640|ref|YP_003727390.1| - 0.043 13.4 0.5 7.8 6.1 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 AAA_26 PF13500.1 gi|298675640|ref|YP_003727390.1| - 0.049 13.2 0.0 0.11 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|298675640|ref|YP_003727390.1| - 0.062 12.3 0.0 1.2 8.2 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_11 PF13086.1 gi|298675640|ref|YP_003727390.1| - 0.066 12.7 0.1 2.5 7.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain Hpr_kinase_C PF07475.7 gi|298675640|ref|YP_003727390.1| - 0.1 11.8 1.2 6.8 5.9 0.0 2.7 3 0 0 3 3 2 0 HPr Serine kinase C-terminal domain Rad51 PF08423.6 gi|298675640|ref|YP_003727390.1| - 0.15 10.9 0.6 5.6 5.7 0.0 2.5 2 0 0 2 2 2 0 Rad51 NTPase_1 PF03266.10 gi|298675640|ref|YP_003727390.1| - 0.29 10.8 3.8 1.7 8.3 0.3 3.1 3 0 0 3 3 3 0 NTPase OrfB_IS605 PF01385.14 gi|298675642|ref|YP_003727392.1| - 2.9e-25 89.0 6.2 6.8e-25 87.7 4.3 1.6 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675642|ref|YP_003727392.1| - 2.2e-18 65.6 0.9 4.5e-18 64.6 0.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675642|ref|YP_003727392.1| - 1.7e-10 40.0 0.1 3.7e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rpr2 PF04032.11 gi|298675643|ref|YP_003727393.1| - 1.4e-22 79.3 1.0 1.7e-22 79.0 0.7 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|298675643|ref|YP_003727393.1| - 0.00049 19.8 1.2 0.00087 19.0 0.9 1.4 1 0 0 1 1 1 1 Putative zinc ribbon domain zf-FCS PF06467.9 gi|298675643|ref|YP_003727393.1| - 0.03 13.9 4.1 0.21 11.2 0.2 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DZR PF12773.2 gi|298675643|ref|YP_003727393.1| - 0.11 12.3 1.1 0.2 11.4 0.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|298675643|ref|YP_003727393.1| - 0.15 11.8 2.8 0.91 9.3 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|298675643|ref|YP_003727393.1| - 0.23 10.6 1.8 0.44 9.8 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Lactamase_B_3 PF13483.1 gi|298675644|ref|YP_003727394.1| - 5.8e-36 123.6 0.3 1.2e-35 122.6 0.1 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|298675644|ref|YP_003727394.1| - 1.1e-18 67.4 0.1 3.5e-18 65.8 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298675644|ref|YP_003727394.1| - 2.4e-05 24.0 3.5 0.031 13.9 0.1 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily TrmB PF01978.14 gi|298675645|ref|YP_003727395.1| - 1.9e-22 78.7 0.4 1.9e-22 78.7 0.3 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|298675645|ref|YP_003727395.1| - 0.0069 16.2 0.2 0.023 14.5 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|298675645|ref|YP_003727395.1| - 0.014 15.1 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family CCDC-167 PF15188.1 gi|298675645|ref|YP_003727395.1| - 0.051 13.5 1.8 0.13 12.2 0.3 2.1 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Rrf2 PF02082.15 gi|298675645|ref|YP_003727395.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4393 PF14337.1 gi|298675645|ref|YP_003727395.1| - 0.13 11.7 2.8 0.086 12.2 0.5 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4393) MMPL PF03176.10 gi|298675646|ref|YP_003727396.1| - 3.9e-60 203.3 4.8 5.1e-30 104.3 0.1 2.1 2 0 0 2 2 2 2 MMPL family ACR_tran PF00873.14 gi|298675646|ref|YP_003727396.1| - 1.5e-17 62.4 12.9 5.3e-11 40.7 3.5 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.3 gi|298675646|ref|YP_003727396.1| - 2.2e-17 62.9 11.6 1e-08 34.8 4.5 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|298675646|ref|YP_003727396.1| - 7.7e-12 44.7 7.7 7.7e-12 44.7 5.3 2.9 3 0 0 3 3 3 1 Protein export membrane protein Patched PF02460.13 gi|298675646|ref|YP_003727396.1| - 7.5e-11 40.6 14.2 9.9e-06 23.7 2.5 2.3 2 0 0 2 2 2 2 Patched family Fzo_mitofusin PF04799.8 gi|298675646|ref|YP_003727396.1| - 0.27 10.5 5.4 0.09 12.1 0.2 2.7 3 0 0 3 3 3 0 fzo-like conserved region DUF1469 PF07332.6 gi|298675646|ref|YP_003727396.1| - 7.5 6.3 0.0 7.5 6.3 0.0 4.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1469) CARDB PF07705.6 gi|298675647|ref|YP_003727397.1| - 1.6e-07 31.2 3.5 0.00026 20.9 0.3 2.7 1 1 0 2 2 2 2 CARDB NPCBM_assoc PF10633.4 gi|298675647|ref|YP_003727397.1| - 1.5e-06 28.1 0.0 0.009 16.0 0.0 3.3 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1180 PF06679.7 gi|298675647|ref|YP_003727397.1| - 0.068 13.0 0.7 0.089 12.6 0.0 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1180) OppC_N PF12911.2 gi|298675647|ref|YP_003727397.1| - 0.39 10.1 2.9 4 6.8 0.1 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C NPCBM_assoc PF10633.4 gi|298675648|ref|YP_003727398.1| - 3.5e-06 26.9 1.1 0.15 12.1 0.1 3.2 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|298675648|ref|YP_003727398.1| - 5.5e-06 26.3 6.2 0.0009 19.2 0.2 3.2 2 1 1 3 3 3 2 CARDB YtkA PF13115.1 gi|298675648|ref|YP_003727398.1| - 0.0048 17.2 0.1 0.052 13.9 0.0 2.6 3 0 0 3 3 3 1 YtkA-like DUF824 PF05688.6 gi|298675648|ref|YP_003727398.1| - 0.032 13.8 0.5 0.12 11.9 0.1 2.0 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) Lip_prot_lig_C PF10437.4 gi|298675648|ref|YP_003727398.1| - 0.05 13.2 0.1 1.2 8.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus SRP9-21 PF05486.7 gi|298675648|ref|YP_003727398.1| - 0.11 12.2 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle 9 kDa protein (SRP9) 5HT_transporter PF03491.8 gi|298675648|ref|YP_003727398.1| - 0.28 11.3 1.8 1.9 8.6 0.1 2.6 3 0 0 3 3 3 0 Serotonin (5-HT) neurotransmitter transporter, N-terminus TOBE PF03459.12 gi|298675649|ref|YP_003727399.1| - 1.3e-13 50.8 0.0 2e-13 50.1 0.0 1.3 1 0 0 1 1 1 1 TOBE domain HTH_1 PF00126.22 gi|298675649|ref|YP_003727399.1| - 4.2e-06 26.3 0.0 7.4e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|298675649|ref|YP_003727399.1| - 0.0026 17.7 0.1 0.0055 16.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|298675649|ref|YP_003727399.1| - 0.012 15.7 0.1 0.022 14.8 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.1 gi|298675649|ref|YP_003727399.1| - 0.012 15.2 0.1 0.025 14.2 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Antitoxin-MazE PF04014.13 gi|298675649|ref|YP_003727399.1| - 0.031 14.0 0.3 0.083 12.6 0.1 2.0 2 0 0 2 2 2 0 Antidote-toxin recognition MazE DUF1071 PF06378.6 gi|298675649|ref|YP_003727399.1| - 0.053 12.6 0.2 0.075 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1071) ABC_tran PF00005.22 gi|298675650|ref|YP_003727400.1| - 1.6e-32 112.6 0.0 2.7e-32 111.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE PF03459.12 gi|298675650|ref|YP_003727400.1| - 2.7e-15 56.2 1.9 4.9e-14 52.1 0.0 3.0 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.1 gi|298675650|ref|YP_003727400.1| - 1.6e-09 38.2 0.7 9.6e-07 29.0 0.5 2.3 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|298675650|ref|YP_003727400.1| - 2.5e-09 36.9 0.0 6.4e-09 35.6 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.1 gi|298675650|ref|YP_003727400.1| - 0.00083 18.5 0.5 0.021 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|298675650|ref|YP_003727400.1| - 0.0025 17.0 0.1 0.035 13.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DEAD PF00270.24 gi|298675650|ref|YP_003727400.1| - 0.0028 17.1 0.0 0.0048 16.4 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|298675650|ref|YP_003727400.1| - 0.0097 15.5 0.0 0.79 9.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|298675650|ref|YP_003727400.1| - 0.012 15.9 0.1 0.023 15.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|298675650|ref|YP_003727400.1| - 0.012 14.6 0.0 0.059 12.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin SbcCD_C PF13558.1 gi|298675650|ref|YP_003727400.1| - 0.018 14.9 0.0 0.095 12.6 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|298675650|ref|YP_003727400.1| - 0.022 14.5 0.0 0.074 12.8 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_29 PF13555.1 gi|298675650|ref|YP_003727400.1| - 0.041 13.4 0.0 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|298675650|ref|YP_003727400.1| - 0.043 13.7 0.0 0.12 12.3 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|298675650|ref|YP_003727400.1| - 0.095 12.9 0.2 0.48 10.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|298675650|ref|YP_003727400.1| - 0.11 11.9 0.4 3.3 7.0 0.0 2.5 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|298675650|ref|YP_003727400.1| - 0.14 12.2 0.1 0.94 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain LRR_4 PF12799.2 gi|298675650|ref|YP_003727400.1| - 0.68 9.6 4.4 11 5.7 0.0 3.3 4 0 0 4 4 4 0 Leucine Rich repeats (2 copies) BPD_transp_1 PF00528.17 gi|298675651|ref|YP_003727401.1| - 4.9e-17 62.0 11.1 4.9e-17 62.0 7.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|298675652|ref|YP_003727402.1| - 2.9e-33 115.4 0.0 3.8e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|298675652|ref|YP_003727402.1| - 2.6e-07 30.7 0.0 4.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PhoU PF01895.14 gi|298675653|ref|YP_003727403.1| - 1.3e-27 96.0 9.7 3.6e-16 59.3 0.9 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|298675653|ref|YP_003727403.1| - 1.5e-09 37.3 0.0 2.9e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PEX-2N PF09263.5 gi|298675653|ref|YP_003727403.1| - 0.12 12.6 0.0 0.44 10.8 0.0 2.0 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal GTP_EFTU PF00009.22 gi|298675654|ref|YP_003727404.1| - 4.6e-15 55.5 1.4 8.7e-07 28.5 0.1 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|298675654|ref|YP_003727404.1| - 5.8e-15 55.2 0.0 8.3e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.16 gi|298675654|ref|YP_003727404.1| - 9.4e-08 31.4 0.0 0.0036 16.5 0.0 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|298675654|ref|YP_003727404.1| - 0.00024 21.9 0.0 0.00047 20.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|298675654|ref|YP_003727404.1| - 0.00025 20.3 0.5 0.0033 16.7 0.3 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B Septin PF00735.13 gi|298675654|ref|YP_003727404.1| - 0.00083 18.4 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Septin Miro PF08477.8 gi|298675654|ref|YP_003727404.1| - 0.00092 19.6 0.0 0.0056 17.1 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein DUF258 PF03193.11 gi|298675654|ref|YP_003727404.1| - 0.0021 17.2 0.0 0.0039 16.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|298675654|ref|YP_003727404.1| - 0.0031 16.7 0.0 0.13 11.5 0.0 2.3 2 1 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_16 PF13191.1 gi|298675654|ref|YP_003727404.1| - 0.004 17.1 0.0 0.0073 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|298675654|ref|YP_003727404.1| - 0.0051 15.7 0.0 0.0076 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|298675654|ref|YP_003727404.1| - 0.0051 17.0 0.1 0.014 15.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|298675654|ref|YP_003727404.1| - 0.0052 16.5 0.0 0.0097 15.6 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|298675654|ref|YP_003727404.1| - 0.0071 16.6 0.0 0.014 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|298675654|ref|YP_003727404.1| - 0.01 15.6 0.0 1.6 8.5 0.0 2.3 1 1 1 2 2 2 0 Dynamin family ABC_tran PF00005.22 gi|298675654|ref|YP_003727404.1| - 0.011 16.0 0.0 0.017 15.3 0.0 1.5 1 1 0 1 1 1 0 ABC transporter PPV_E1_C PF00519.12 gi|298675654|ref|YP_003727404.1| - 0.012 14.2 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase NTPase_1 PF03266.10 gi|298675654|ref|YP_003727404.1| - 0.015 15.0 0.1 0.072 12.8 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.1 gi|298675654|ref|YP_003727404.1| - 0.015 14.6 0.2 0.21 10.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|298675654|ref|YP_003727404.1| - 0.019 15.1 0.0 0.054 13.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain DUF3388 PF11868.3 gi|298675654|ref|YP_003727404.1| - 0.028 13.5 0.1 0.061 12.4 0.0 1.5 2 0 0 2 2 1 0 Protein of unknown function (DUF3388) RNA_helicase PF00910.17 gi|298675654|ref|YP_003727404.1| - 0.031 14.4 0.0 0.064 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ArgK PF03308.11 gi|298675654|ref|YP_003727404.1| - 0.034 12.9 0.0 0.24 10.1 0.0 2.2 2 1 0 2 2 2 0 ArgK protein MobB PF03205.9 gi|298675654|ref|YP_003727404.1| - 0.049 13.3 0.0 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|298675654|ref|YP_003727404.1| - 0.05 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|298675654|ref|YP_003727404.1| - 0.075 12.7 0.2 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Part of AAA domain Parvo_NS1 PF01057.12 gi|298675654|ref|YP_003727404.1| - 0.078 11.8 0.1 0.073 11.9 0.1 1.4 1 1 0 1 1 1 0 Parvovirus non-structural protein NS1 cobW PF02492.14 gi|298675654|ref|YP_003727404.1| - 0.08 12.3 0.1 0.45 9.9 0.1 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|298675654|ref|YP_003727404.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|298675654|ref|YP_003727404.1| - 0.13 11.7 0.0 27 4.2 0.0 3.0 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation DUF2073 PF09846.4 gi|298675655|ref|YP_003727405.1| - 1.1e-40 137.4 0.3 1.3e-40 137.2 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) SIS PF01380.17 gi|298675657|ref|YP_003727407.1| - 2.6e-18 65.9 0.0 4.7e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|298675657|ref|YP_003727407.1| - 0.00024 20.8 4.5 0.0016 18.1 0.3 2.4 1 1 1 2 2 2 2 SIS domain THF_DHG_CYH_C PF02882.14 gi|298675657|ref|YP_003727407.1| - 0.02 13.9 0.2 0.028 13.4 0.2 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Aminotran_1_2 PF00155.16 gi|298675658|ref|YP_003727408.1| - 1.2e-65 221.8 0.0 1.4e-65 221.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|298675658|ref|YP_003727408.1| - 2.1e-11 43.1 0.0 3.9e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|298675658|ref|YP_003727408.1| - 3.9e-10 39.3 0.0 6.4e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|298675658|ref|YP_003727408.1| - 1e-06 27.3 0.0 1.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|298675658|ref|YP_003727408.1| - 7.6e-05 21.9 0.0 0.00012 21.2 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase DUF1246 PF06849.7 gi|298675658|ref|YP_003727408.1| - 0.035 13.8 0.0 0.54 10.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1246) NOG1 PF06858.9 gi|298675659|ref|YP_003727409.1| - 7.1e-22 77.0 0.1 1.5e-21 76.0 0.1 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|298675659|ref|YP_003727409.1| - 2.4e-16 59.6 0.0 5.9e-16 58.4 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|298675659|ref|YP_003727409.1| - 4.7e-08 32.4 0.0 1.2e-07 31.1 0.0 1.6 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|298675659|ref|YP_003727409.1| - 0.00041 20.8 0.0 0.0008 19.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|298675659|ref|YP_003727409.1| - 0.0091 15.8 0.1 0.51 10.1 0.0 2.5 1 1 1 2 2 2 1 Dynamin family AIG1 PF04548.11 gi|298675659|ref|YP_003727409.1| - 0.012 14.7 0.0 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 AIG1 family Borrelia_lipo_1 PF05714.6 gi|298675659|ref|YP_003727409.1| - 0.079 12.0 0.5 0.26 10.3 0.1 2.0 2 0 0 2 2 2 0 Borrelia burgdorferi virulent strain associated lipoprotein HrcA_DNA-bdg PF03444.10 gi|298675660|ref|YP_003727410.1| - 1.3e-36 123.8 0.6 3.3e-36 122.5 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|298675660|ref|YP_003727410.1| - 2.2e-25 88.1 1.6 1.4e-13 50.4 0.1 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|298675660|ref|YP_003727410.1| - 1.7e-08 34.4 0.1 1.5e-07 31.3 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|298675660|ref|YP_003727410.1| - 9.6e-06 25.1 0.0 1.9e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|298675660|ref|YP_003727410.1| - 0.0097 15.6 0.0 0.028 14.1 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|298675660|ref|YP_003727410.1| - 0.098 12.3 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 MarR family PRA-PH PF01503.12 gi|298675661|ref|YP_003727411.1| - 3e-12 46.6 0.1 3.5e-12 46.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|298675661|ref|YP_003727411.1| - 0.0005 19.9 2.1 0.00061 19.6 0.8 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Aconitase PF00330.15 gi|298675662|ref|YP_003727412.1| - 4.7e-82 275.9 0.3 2.6e-54 184.4 0.1 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|298675662|ref|YP_003727412.1| - 0.0085 14.6 0.0 0.013 14.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PPP5 PF08321.7 gi|298675662|ref|YP_003727412.1| - 0.016 15.1 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 PPP5 TPR repeat region TrkA_N PF02254.13 gi|298675663|ref|YP_003727413.1| - 2.5e-26 91.9 0.7 6.4e-26 90.6 0.2 2.0 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.15 gi|298675663|ref|YP_003727413.1| - 6.3e-15 55.0 1.5 6.3e-15 55.0 1.0 2.1 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|298675663|ref|YP_003727413.1| - 1e-10 41.1 1.0 4e-10 39.2 0.2 2.3 2 0 0 2 2 2 1 DHHA1 domain NAD_binding_10 PF13460.1 gi|298675663|ref|YP_003727413.1| - 0.00014 21.8 0.0 0.00047 20.2 0.0 1.9 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|298675663|ref|YP_003727413.1| - 0.0002 20.5 0.0 0.00056 18.9 0.0 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|298675663|ref|YP_003727413.1| - 0.00066 19.1 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|298675663|ref|YP_003727413.1| - 0.0013 19.0 0.1 0.075 13.3 0.0 2.8 1 1 1 3 3 3 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|298675663|ref|YP_003727413.1| - 0.0016 18.1 0.0 0.0073 16.0 0.0 2.0 1 1 1 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|298675663|ref|YP_003727413.1| - 0.0018 18.6 0.0 0.0075 16.6 0.0 2.2 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|298675663|ref|YP_003727413.1| - 0.0064 16.7 0.0 0.02 15.1 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|298675663|ref|YP_003727413.1| - 0.0075 15.6 0.0 0.018 14.4 0.0 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|298675663|ref|YP_003727413.1| - 0.011 14.8 0.0 0.027 13.6 0.0 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|298675663|ref|YP_003727413.1| - 0.017 15.4 0.0 0.83 10.1 0.0 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_chain PF00289.17 gi|298675663|ref|YP_003727413.1| - 0.025 14.6 0.0 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain adh_short PF00106.20 gi|298675663|ref|YP_003727413.1| - 0.052 13.4 0.0 0.21 11.4 0.0 2.2 1 1 0 1 1 1 0 short chain dehydrogenase Pyr_redox_2 PF07992.9 gi|298675663|ref|YP_003727413.1| - 0.06 13.2 0.0 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|298675663|ref|YP_003727413.1| - 0.06 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Carb_kinase PF01256.12 gi|298675664|ref|YP_003727414.1| - 1.7e-55 187.9 0.2 2.7e-55 187.3 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|298675664|ref|YP_003727414.1| - 7.5e-44 149.3 0.9 4.3e-43 146.8 0.0 2.2 2 1 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|298675664|ref|YP_003727414.1| - 6.9e-07 28.6 0.4 8.6e-06 25.0 0.0 2.6 2 1 1 3 3 3 1 Hydroxyethylthiazole kinase family Herpes_MCP PF03122.9 gi|298675664|ref|YP_003727414.1| - 0.2 8.9 0.0 0.29 8.4 0.0 1.0 1 0 0 1 1 1 0 Herpes virus major capsid protein MoaC PF01967.16 gi|298675666|ref|YP_003727416.1| - 8.1e-49 164.7 3.5 9.3e-49 164.5 2.4 1.0 1 0 0 1 1 1 1 MoaC family Pribosyltran_N PF13793.1 gi|298675667|ref|YP_003727417.1| - 3e-25 88.2 0.1 4.4e-22 77.9 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|298675667|ref|YP_003727417.1| - 1.4e-15 57.0 0.1 4.7e-15 55.4 0.1 1.9 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|298675667|ref|YP_003727417.1| - 1.7e-07 31.1 1.2 3.3e-07 30.2 0.8 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|298675667|ref|YP_003727417.1| - 1.9e-06 27.2 0.1 3.4e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|298675667|ref|YP_003727417.1| - 0.006 15.9 0.1 0.015 14.6 0.1 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase TIR PF01582.15 gi|298675667|ref|YP_003727417.1| - 0.02 14.3 0.1 0.041 13.3 0.1 1.4 1 0 0 1 1 1 0 TIR domain TFIIS_C PF01096.13 gi|298675668|ref|YP_003727418.1| - 0.11 12.1 0.1 0.2 11.2 0.1 1.4 1 0 0 1 1 1 0 Transcription factor S-II (TFIIS) HhH-GPD PF00730.20 gi|298675669|ref|YP_003727419.1| - 1.2e-16 60.9 0.0 1.8e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|298675669|ref|YP_003727419.1| - 1.8e-05 24.1 0.0 3.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|298675669|ref|YP_003727419.1| - 0.0014 18.7 0.0 0.0033 17.5 0.0 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix domain TPD PF14811.1 gi|298675670|ref|YP_003727420.1| - 2.9e-48 162.9 5.0 2.9e-48 162.9 3.5 1.5 2 0 0 2 2 2 1 Protein of unknown function TPD sequence-motif RNA_pol_3_Rpc31 PF11705.3 gi|298675670|ref|YP_003727420.1| - 0.048 13.5 2.1 0.07 13.0 1.5 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Picorna_P3A PF06363.6 gi|298675670|ref|YP_003727420.1| - 0.062 13.3 0.9 0.11 12.4 0.1 1.8 2 0 0 2 2 2 0 Picornaviridae P3A protein HTH_40 PF14493.1 gi|298675670|ref|YP_003727420.1| - 0.067 13.4 1.0 0.18 12.0 0.3 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain IF2_N PF04760.10 gi|298675670|ref|YP_003727420.1| - 0.63 9.7 5.5 2.2 8.0 0.2 3.3 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region DIM1 PF02966.11 gi|298675672|ref|YP_003727422.1| - 0.1 12.1 0.0 0.11 12.0 0.0 1.0 1 0 0 1 1 1 0 Mitosis protein DIM1 tRNA-synt_1f PF01921.13 gi|298675673|ref|YP_003727423.1| - 1.9e-135 451.2 0.0 9.1e-134 445.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|298675673|ref|YP_003727423.1| - 1.3e-07 30.6 0.2 0.00037 19.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|298675673|ref|YP_003727423.1| - 2.3e-06 26.9 0.0 0.034 13.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Transpos_assoc PF13963.1 gi|298675673|ref|YP_003727423.1| - 0.075 13.0 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 Transposase-associated domain tRNA-synt_1b PF00579.20 gi|298675673|ref|YP_003727423.1| - 0.14 11.2 0.0 4.6 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Methyltransf_11 PF08241.7 gi|298675674|ref|YP_003727424.1| - 7.5e-21 74.4 0.0 1.3e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298675674|ref|YP_003727424.1| - 1.8e-17 63.5 0.0 2.3e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298675674|ref|YP_003727424.1| - 8.1e-16 57.9 0.0 6.1e-15 55.1 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298675674|ref|YP_003727424.1| - 2e-12 47.3 0.0 1.2e-11 44.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298675674|ref|YP_003727424.1| - 1e-11 45.1 0.0 1.9e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675674|ref|YP_003727424.1| - 4.8e-10 40.0 0.0 7.5e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|298675674|ref|YP_003727424.1| - 2.6e-09 36.5 0.0 3.7e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|298675674|ref|YP_003727424.1| - 1.7e-07 30.6 0.0 2.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|298675674|ref|YP_003727424.1| - 1.8e-07 30.5 0.0 2.1e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.6 gi|298675674|ref|YP_003727424.1| - 1e-06 27.7 0.0 1.2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|298675674|ref|YP_003727424.1| - 1.5e-05 24.9 0.0 4.3e-05 23.5 0.0 1.7 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|298675674|ref|YP_003727424.1| - 2.6e-05 23.6 0.0 3.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|298675674|ref|YP_003727424.1| - 9.6e-05 21.6 0.0 0.00015 21.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|298675674|ref|YP_003727424.1| - 0.00018 20.9 0.0 0.00034 20.0 0.0 1.6 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW TPMT PF05724.6 gi|298675674|ref|YP_003727424.1| - 0.0017 17.8 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Flu_NS2 PF00601.14 gi|298675674|ref|YP_003727424.1| - 0.0062 16.7 0.4 0.02 15.0 0.0 1.9 2 0 0 2 2 2 1 Influenza non-structural protein (NS2) CheR PF01739.13 gi|298675674|ref|YP_003727424.1| - 0.03 13.5 0.1 0.78 8.9 0.0 2.6 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Herpes_IE2_3 PF03361.9 gi|298675674|ref|YP_003727424.1| - 0.071 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Herpes virus intermediate/early protein 2/3 BofA PF07441.6 gi|298675675|ref|YP_003727425.1| - 4.1e-05 23.4 24.1 5.1e-05 23.1 16.7 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA DUF2530 PF10745.4 gi|298675675|ref|YP_003727425.1| - 3.2 7.8 8.6 1 9.3 3.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) Nuc_deoxyrib_tr PF05014.10 gi|298675676|ref|YP_003727426.1| - 3.2e-09 36.6 0.0 3.4e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Peptidase_U32 PF01136.14 gi|298675677|ref|YP_003727427.1| - 1.6e-121 403.5 0.0 2.6e-81 271.9 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3656 PF12392.3 gi|298675677|ref|YP_003727427.1| - 2.4e-28 98.6 0.0 5.4e-28 97.5 0.0 1.6 1 0 0 1 1 1 1 Collagenase Phage_Coat_B PF05356.6 gi|298675677|ref|YP_003727427.1| - 0.028 14.1 0.0 2 8.1 0.0 2.8 2 0 0 2 2 2 0 Phage Coat protein B DUF3017 PF11222.3 gi|298675678|ref|YP_003727428.1| - 0.0033 17.1 0.1 0.005 16.6 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3017) CARDB PF07705.6 gi|298675679|ref|YP_003727429.1| - 0.029 14.4 4.4 0.073 13.1 0.9 2.4 2 0 0 2 2 2 0 CARDB His_biosynth PF00977.16 gi|298675680|ref|YP_003727430.1| - 9.4e-86 286.7 0.4 1.1e-85 286.5 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|298675680|ref|YP_003727430.1| - 1.6e-06 27.3 0.4 0.0068 15.5 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|298675680|ref|YP_003727430.1| - 0.00012 20.9 0.0 0.00059 18.7 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|298675680|ref|YP_003727430.1| - 0.0002 20.6 2.0 0.16 11.0 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|298675680|ref|YP_003727430.1| - 0.00022 20.2 0.1 0.054 12.4 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|298675680|ref|YP_003727430.1| - 0.00046 19.5 0.8 0.0058 15.9 0.2 2.4 2 1 0 2 2 2 1 PcrB family IMPDH PF00478.20 gi|298675680|ref|YP_003727430.1| - 0.00083 18.3 0.6 0.043 12.6 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|298675680|ref|YP_003727430.1| - 0.0051 15.9 0.3 0.3 10.1 0.0 2.2 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI SBP_bac_3 PF00497.15 gi|298675680|ref|YP_003727430.1| - 0.022 14.0 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 G3P_antiterm PF04309.7 gi|298675680|ref|YP_003727430.1| - 0.1 11.6 0.1 0.23 10.4 0.0 1.6 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DUF1614 PF07758.6 gi|298675681|ref|YP_003727431.1| - 6.3e-52 175.8 13.0 6.3e-52 175.8 9.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) Ribosomal_S7 PF00177.16 gi|298675681|ref|YP_003727431.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S7p/S5e DUF4131 PF13567.1 gi|298675681|ref|YP_003727431.1| - 1.4 8.2 11.9 0.051 12.9 2.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF3165 PF11364.3 gi|298675681|ref|YP_003727431.1| - 2.1 8.4 16.1 0.16 12.1 1.7 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3165) DNase-RNase PF02577.9 gi|298675682|ref|YP_003727432.1| - 4.5e-41 139.2 0.2 5.2e-41 139.0 0.1 1.0 1 0 0 1 1 1 1 Bifunctional nuclease OrfB_IS605 PF01385.14 gi|298675683|ref|YP_003727433.1| - 3.3e-34 118.2 6.4 5.2e-34 117.6 4.4 1.3 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675683|ref|YP_003727433.1| - 3.9e-19 68.0 0.3 1.1e-18 66.6 0.2 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298675683|ref|YP_003727433.1| - 6.6e-09 34.9 0.2 1.3e-08 34.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Y1_Tnp PF01797.11 gi|298675684|ref|YP_003727434.1| - 2.6e-35 120.9 0.2 3e-35 120.7 0.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like PCMT PF01135.14 gi|298675685|ref|YP_003727435.1| - 5.5e-71 238.4 0.0 6.5e-71 238.1 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|298675685|ref|YP_003727435.1| - 4.9e-15 55.4 0.0 6.8e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675685|ref|YP_003727435.1| - 3.5e-11 43.6 0.0 7.5e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|298675685|ref|YP_003727435.1| - 5.3e-08 32.2 0.0 7.5e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|298675685|ref|YP_003727435.1| - 2.3e-07 30.5 0.0 2.9e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|298675685|ref|YP_003727435.1| - 2.4e-07 30.8 0.0 4.6e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298675685|ref|YP_003727435.1| - 3.3e-07 29.6 0.0 4.3e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|298675685|ref|YP_003727435.1| - 2.1e-05 23.9 0.0 3.7e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|298675685|ref|YP_003727435.1| - 2.7e-05 23.1 0.1 3.8e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_3 PF01596.12 gi|298675685|ref|YP_003727435.1| - 0.00016 20.7 0.0 0.00023 20.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Met_10 PF02475.11 gi|298675685|ref|YP_003727435.1| - 0.0014 18.2 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_24 PF13578.1 gi|298675685|ref|YP_003727435.1| - 0.0026 18.5 0.0 0.0048 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|298675685|ref|YP_003727435.1| - 0.0045 17.4 0.0 0.018 15.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|298675685|ref|YP_003727435.1| - 0.01 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|298675685|ref|YP_003727435.1| - 0.013 14.6 0.0 0.017 14.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|298675685|ref|YP_003727435.1| - 0.024 13.6 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_25 PF13649.1 gi|298675685|ref|YP_003727435.1| - 0.025 14.9 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298675685|ref|YP_003727435.1| - 0.07 12.8 0.0 0.19 11.4 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Nuclease_act PF08133.6 gi|298675685|ref|YP_003727435.1| - 0.08 12.4 0.5 0.38 10.2 0.2 2.1 2 0 0 2 2 2 0 Anticodon nuclease activator family zf-RING_UBOX PF13445.1 gi|298675685|ref|YP_003727435.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 RING-type zinc-finger Arv1 PF04161.8 gi|298675686|ref|YP_003727436.1| - 0.14 12.0 0.2 0.22 11.4 0.2 1.3 1 0 0 1 1 1 0 Arv1-like family zinc_ribbon_5 PF13719.1 gi|298675686|ref|YP_003727436.1| - 0.82 9.3 3.3 3.8 7.1 2.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|298675686|ref|YP_003727436.1| - 1.3 8.6 6.0 42 3.7 3.7 2.9 1 1 2 3 3 3 0 InsA N-terminal domain zinc_ribbon_4 PF13717.1 gi|298675686|ref|YP_003727436.1| - 4 7.2 5.6 6.1 6.6 2.7 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Arginase PF00491.16 gi|298675687|ref|YP_003727437.1| - 1.5e-75 254.0 0.0 1.7e-75 253.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF953 PF06110.6 gi|298675687|ref|YP_003727437.1| - 0.12 11.8 0.0 4.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF953) eIF-5a PF01287.15 gi|298675688|ref|YP_003727438.1| - 3.2e-14 52.6 0.3 5.8e-14 51.7 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|298675688|ref|YP_003727438.1| - 0.00056 19.7 0.0 0.00091 19.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KH_5 PF13184.1 gi|298675688|ref|YP_003727438.1| - 0.02 14.7 0.0 0.044 13.5 0.0 1.6 1 0 0 1 1 1 0 NusA-like KH domain EFP PF01132.15 gi|298675688|ref|YP_003727438.1| - 0.05 13.2 0.2 0.1 12.2 0.1 1.6 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain AFOR_C PF01314.13 gi|298675689|ref|YP_003727439.1| - 9.7e-98 327.3 0.0 1.2e-97 326.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|298675689|ref|YP_003727439.1| - 5.6e-70 234.7 0.1 8e-70 234.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Na_H_Exchanger PF00999.16 gi|298675690|ref|YP_003727440.1| - 1.5e-52 178.4 48.6 1.7e-52 178.2 33.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Fer4_13 PF13370.1 gi|298675691|ref|YP_003727441.1| - 2.7e-20 72.5 7.5 3.2e-20 72.2 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|298675691|ref|YP_003727441.1| - 2.9e-12 46.9 5.8 3.6e-12 46.6 4.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|298675691|ref|YP_003727441.1| - 2.4e-07 30.9 2.1 3.6e-07 30.3 1.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675691|ref|YP_003727441.1| - 0.00028 20.3 8.6 0.0034 16.9 0.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298675691|ref|YP_003727441.1| - 0.00057 19.6 4.4 0.036 13.9 0.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675691|ref|YP_003727441.1| - 0.0035 17.6 4.8 0.032 14.5 3.5 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675691|ref|YP_003727441.1| - 0.0091 15.7 4.1 0.024 14.4 2.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675691|ref|YP_003727441.1| - 0.012 15.4 0.8 0.012 15.4 0.5 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|298675691|ref|YP_003727441.1| - 0.038 13.8 0.2 0.052 13.3 0.2 1.2 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_16 PF13484.1 gi|298675691|ref|YP_003727441.1| - 0.063 14.0 2.7 4.8 8.0 0.8 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|298675691|ref|YP_003727441.1| - 0.23 11.8 1.6 0.23 11.8 1.1 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298675691|ref|YP_003727441.1| - 0.37 11.1 2.5 1.3 9.4 1.8 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675691|ref|YP_003727441.1| - 0.53 10.3 4.2 0.28 11.2 0.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675691|ref|YP_003727441.1| - 2.3 8.2 9.2 1.4 8.8 0.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|298675691|ref|YP_003727441.1| - 6.8 7.5 10.5 14 6.5 1.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain DNA_binding_1 PF01035.15 gi|298675692|ref|YP_003727442.1| - 5.5e-28 96.5 0.0 7e-28 96.1 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4 PF04545.11 gi|298675692|ref|YP_003727442.1| - 0.084 12.2 0.1 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Peptidase_M10 PF00413.19 gi|298675693|ref|YP_003727443.1| - 2.2e-15 56.6 0.0 3.4e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Matrixin Astacin PF01400.19 gi|298675693|ref|YP_003727443.1| - 0.0022 17.4 0.1 0.0052 16.1 0.0 1.6 2 0 0 2 2 2 1 Astacin (Peptidase family M12A) Peptidase_M66 PF10462.4 gi|298675693|ref|YP_003727443.1| - 0.0031 16.4 0.1 0.0042 15.9 0.1 1.2 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.3 gi|298675693|ref|YP_003727443.1| - 0.0095 14.4 0.0 0.013 14.0 0.0 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M57 PF12388.3 gi|298675693|ref|YP_003727443.1| - 0.014 14.7 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase Reprolysin_2 PF13574.1 gi|298675693|ref|YP_003727443.1| - 0.014 15.4 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|298675693|ref|YP_003727443.1| - 0.037 14.5 0.0 0.052 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|298675693|ref|YP_003727443.1| - 0.038 13.5 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M54 PF07998.6 gi|298675693|ref|YP_003727443.1| - 0.086 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin_5 PF13688.1 gi|298675693|ref|YP_003727443.1| - 0.12 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Hydrolase PF00702.21 gi|298675694|ref|YP_003727444.1| - 2e-14 54.5 0.5 7.4e-14 52.6 0.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|298675694|ref|YP_003727444.1| - 4.8e-10 39.9 0.4 8.6e-10 39.0 0.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|298675694|ref|YP_003727444.1| - 4.5e-05 23.1 6.9 0.045 13.3 0.0 2.7 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|298675694|ref|YP_003727444.1| - 0.00021 20.9 0.2 0.016 14.8 0.1 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|298675694|ref|YP_003727444.1| - 0.015 15.5 0.0 0.045 13.9 0.0 1.8 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ABC_tran PF00005.22 gi|298675695|ref|YP_003727445.1| - 6.5e-54 181.9 0.1 6.8e-27 94.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_15 PF13175.1 gi|298675695|ref|YP_003727445.1| - 4.8e-07 29.1 0.7 0.092 11.7 0.0 3.5 3 0 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.1 gi|298675695|ref|YP_003727445.1| - 1.7e-06 28.2 0.1 0.4 10.5 0.0 3.9 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|298675695|ref|YP_003727445.1| - 1.4e-05 24.4 1.2 0.17 11.0 0.0 3.0 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|298675695|ref|YP_003727445.1| - 2.8e-05 23.9 0.0 0.54 10.2 0.0 3.3 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit ATP-synt_ab PF00006.20 gi|298675695|ref|YP_003727445.1| - 7.2e-05 22.3 0.1 0.33 10.4 0.0 2.3 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|298675695|ref|YP_003727445.1| - 7.8e-05 21.9 0.4 0.13 11.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 PRK PF00485.13 gi|298675695|ref|YP_003727445.1| - 0.00094 18.7 0.1 0.65 9.5 0.0 2.4 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|298675695|ref|YP_003727445.1| - 0.00098 19.1 0.0 0.37 10.7 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|298675695|ref|YP_003727445.1| - 0.0019 17.0 0.2 0.18 10.6 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain UPF0079 PF02367.12 gi|298675695|ref|YP_003727445.1| - 0.0024 17.5 0.4 0.64 9.6 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|298675695|ref|YP_003727445.1| - 0.0024 17.3 0.2 1.7 8.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|298675695|ref|YP_003727445.1| - 0.0029 17.8 0.9 0.58 10.4 0.3 3.2 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|298675695|ref|YP_003727445.1| - 0.0037 16.7 0.1 3.4 7.0 0.0 2.8 3 0 0 3 3 3 2 AAA domain KaiC PF06745.8 gi|298675695|ref|YP_003727445.1| - 0.0039 16.3 4.2 0.66 9.0 0.1 3.6 3 1 0 4 4 4 1 KaiC AAA_23 PF13476.1 gi|298675695|ref|YP_003727445.1| - 0.0082 16.4 1.2 3.8 7.7 0.1 2.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|298675695|ref|YP_003727445.1| - 0.0083 16.9 2.0 1.3 9.8 0.8 2.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|298675695|ref|YP_003727445.1| - 0.0089 15.6 1.4 0.74 9.3 0.0 2.8 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|298675695|ref|YP_003727445.1| - 0.012 15.8 3.0 2.9 8.0 0.1 3.2 2 2 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|298675695|ref|YP_003727445.1| - 0.013 15.2 4.7 1.5 8.6 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|298675695|ref|YP_003727445.1| - 0.021 14.2 3.0 6.8 6.0 0.0 3.6 3 1 0 3 3 3 0 AAA-like domain AAA_19 PF13245.1 gi|298675695|ref|YP_003727445.1| - 0.025 14.3 0.2 6.8 6.5 0.0 2.6 2 0 0 2 2 2 0 Part of AAA domain DLIC PF05783.6 gi|298675695|ref|YP_003727445.1| - 0.034 12.8 0.0 0.063 11.9 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PduV-EutP PF10662.4 gi|298675695|ref|YP_003727445.1| - 0.042 13.3 0.4 3.9 6.9 0.0 2.9 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FtsK_SpoIIIE PF01580.13 gi|298675695|ref|YP_003727445.1| - 0.06 12.8 1.3 8.3 5.8 0.0 2.6 3 0 0 3 3 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|298675695|ref|YP_003727445.1| - 0.066 12.3 0.1 1 8.4 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.1 gi|298675695|ref|YP_003727445.1| - 0.17 11.7 0.1 6.7 6.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.1 gi|298675695|ref|YP_003727445.1| - 0.22 9.9 1.7 5.9 5.2 0.0 3.0 3 0 0 3 3 3 0 AAA domain RNA_POL_M_15KD PF02150.11 gi|298675695|ref|YP_003727445.1| - 2.4 7.8 5.3 1.8 8.3 0.2 2.5 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Pro_isomerase PF00160.16 gi|298675696|ref|YP_003727446.1| - 6.6e-09 36.1 2.8 0.054 13.7 0.0 5.0 3 2 0 3 3 3 3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Fer2_4 PF13510.1 gi|298675696|ref|YP_003727446.1| - 0.058 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF2102 PF09875.4 gi|298675697|ref|YP_003727447.1| - 1.3e-41 140.3 0.0 2.1e-41 139.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF2112 PF09885.4 gi|298675698|ref|YP_003727448.1| - 1.9e-65 218.8 0.0 2.2e-65 218.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) BcrAD_BadFG PF01869.15 gi|298675699|ref|YP_003727449.1| - 7.2e-61 205.8 4.3 1e-60 205.3 3.0 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MreB_Mbl PF06723.8 gi|298675699|ref|YP_003727449.1| - 0.0016 17.1 0.1 0.0037 15.9 0.0 1.7 1 0 0 1 1 1 1 MreB/Mbl protein Hydant_A_N PF05378.8 gi|298675699|ref|YP_003727449.1| - 0.0022 17.5 0.3 0.0066 15.9 0.2 1.8 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|298675699|ref|YP_003727449.1| - 0.02 14.6 5.5 0.7 9.7 0.1 2.7 2 1 0 2 2 2 0 Cell division protein FtsA Actin PF00022.14 gi|298675699|ref|YP_003727449.1| - 0.051 11.9 0.2 0.54 8.6 0.0 2.4 3 0 0 3 3 3 0 Actin Peptidase_M22 PF00814.20 gi|298675699|ref|YP_003727449.1| - 0.06 12.8 0.0 2.9 7.3 0.0 2.3 2 0 0 2 2 2 0 Glycoprotease family Jag_N PF14804.1 gi|298675699|ref|YP_003727449.1| - 0.082 12.9 0.3 0.35 10.9 0.2 2.1 1 0 0 1 1 1 0 Jag N-terminus DUF2113 PF09886.4 gi|298675700|ref|YP_003727450.1| - 2.1e-63 212.9 2.1 2.5e-63 212.6 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) MCR_C PF04609.7 gi|298675701|ref|YP_003727451.1| - 8e-111 369.1 0.1 9.2e-111 368.9 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C CMD PF02627.15 gi|298675702|ref|YP_003727452.1| - 5e-14 51.9 0.0 6.7e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1119 PF06550.6 gi|298675703|ref|YP_003727453.1| - 2.7e-102 341.7 24.5 3.2e-102 341.4 17.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) DUF1118 PF06549.7 gi|298675703|ref|YP_003727453.1| - 5 7.3 6.1 1 9.5 0.4 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1118) Baculo_PEP_C PF04513.7 gi|298675704|ref|YP_003727454.1| - 0.0013 18.6 1.9 0.0016 18.2 1.3 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus UPF0104 PF03706.8 gi|298675704|ref|YP_003727454.1| - 0.0065 15.7 0.0 0.0075 15.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) HAMP PF00672.20 gi|298675704|ref|YP_003727454.1| - 0.011 15.9 1.9 0.011 15.9 1.4 1.9 2 1 0 2 2 2 0 HAMP domain DUF948 PF06103.6 gi|298675704|ref|YP_003727454.1| - 0.013 15.3 0.2 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Polysacc_synt_C PF14667.1 gi|298675704|ref|YP_003727454.1| - 0.018 14.8 3.3 0.022 14.5 2.3 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain O-antigen_lig PF13425.1 gi|298675704|ref|YP_003727454.1| - 0.019 14.9 0.2 0.021 14.7 0.1 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Reticulon PF02453.12 gi|298675704|ref|YP_003727454.1| - 0.041 13.4 1.1 0.3 10.6 0.8 1.9 1 1 0 1 1 1 0 Reticulon FragX_IP PF05994.6 gi|298675704|ref|YP_003727454.1| - 0.056 11.2 0.2 0.059 11.1 0.2 1.1 1 0 0 1 1 1 0 Cytoplasmic Fragile-X interacting family 7TM_GPCR_Srd PF10317.4 gi|298675704|ref|YP_003727454.1| - 0.062 12.2 0.1 0.069 12.1 0.1 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srd DUF1772 PF08592.6 gi|298675704|ref|YP_003727454.1| - 0.067 12.9 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) HN PF00423.14 gi|298675704|ref|YP_003727454.1| - 0.068 11.4 1.2 0.079 11.2 0.9 1.1 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase ABC2_membrane PF01061.19 gi|298675704|ref|YP_003727454.1| - 0.081 12.0 2.2 0.1 11.7 1.5 1.1 1 0 0 1 1 1 0 ABC-2 type transporter DUF486 PF04342.7 gi|298675704|ref|YP_003727454.1| - 0.097 12.7 0.4 0.14 12.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF486 DUF4446 PF14584.1 gi|298675704|ref|YP_003727454.1| - 0.72 9.6 3.4 0.25 11.1 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF2721 PF11026.3 gi|298675704|ref|YP_003727454.1| - 5 6.7 6.5 1.6 8.3 2.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) XPG_I PF00867.13 gi|298675706|ref|YP_003727456.1| - 2.6e-27 94.7 0.0 5.9e-27 93.5 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|298675706|ref|YP_003727456.1| - 5.2e-23 81.2 0.0 1e-22 80.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|298675706|ref|YP_003727456.1| - 0.00021 21.4 0.0 0.00052 20.2 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|298675706|ref|YP_003727456.1| - 0.00047 19.5 0.0 0.00073 18.9 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain RelB PF04221.7 gi|298675706|ref|YP_003727456.1| - 0.0082 15.8 0.0 3.5 7.4 0.0 2.7 2 0 0 2 2 2 2 RelB antitoxin eIF3_N PF09440.5 gi|298675706|ref|YP_003727456.1| - 0.19 11.9 0.1 0.19 11.9 0.0 2.0 3 0 0 3 3 3 0 eIF3 subunit 6 N terminal domain iPGM_N PF06415.8 gi|298675707|ref|YP_003727457.1| - 5.4e-89 297.3 0.6 7.3e-89 296.9 0.4 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|298675707|ref|YP_003727457.1| - 5.3e-88 294.6 0.4 6.2e-88 294.4 0.3 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|298675707|ref|YP_003727457.1| - 5.5e-06 25.9 0.2 1e-05 25.0 0.2 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|298675707|ref|YP_003727457.1| - 0.00047 19.4 0.1 0.013 14.7 0.0 2.6 2 1 0 2 2 2 1 Sulfatase Alk_phosphatase PF00245.15 gi|298675707|ref|YP_003727457.1| - 0.029 13.0 0.3 4.6 5.8 0.2 2.1 2 0 0 2 2 2 0 Alkaline phosphatase CBS PF00571.23 gi|298675708|ref|YP_003727458.1| - 3.4e-30 103.5 0.6 8e-15 54.3 0.1 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|298675708|ref|YP_003727458.1| - 2.7e-22 78.6 9.2 1.7e-15 56.4 2.0 2.5 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|298675708|ref|YP_003727458.1| - 2.9e-05 23.5 0.5 2.9e-05 23.5 0.3 2.0 2 0 0 2 2 2 1 Peptidase M50B-like TraB PF01963.12 gi|298675709|ref|YP_003727459.1| - 3e-51 174.3 0.0 4.4e-51 173.8 0.0 1.2 1 0 0 1 1 1 1 TraB family FTR_C PF02741.10 gi|298675710|ref|YP_003727460.1| - 6.4e-66 220.7 1.5 1.1e-65 220.0 1.0 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|298675710|ref|YP_003727460.1| - 6.5e-63 210.7 0.0 1.2e-62 209.8 0.0 1.5 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase E1-E2_ATPase PF00122.15 gi|298675711|ref|YP_003727461.1| - 1.2e-52 178.2 0.6 2.8e-52 177.0 0.2 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|298675711|ref|YP_003727461.1| - 1.7e-50 172.3 0.0 2.6e-50 171.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|298675711|ref|YP_003727461.1| - 3.3e-17 63.2 0.0 7.4e-17 62.1 0.0 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|298675711|ref|YP_003727461.1| - 2.7e-06 27.1 0.9 0.0036 16.8 0.4 2.8 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HhH-GPD PF00730.20 gi|298675712|ref|YP_003727462.1| - 1.8e-25 89.3 0.0 2.2e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|298675712|ref|YP_003727462.1| - 1e-05 24.9 0.0 0.00025 20.5 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|298675712|ref|YP_003727462.1| - 0.00066 19.8 0.0 0.68 10.1 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|298675712|ref|YP_003727462.1| - 0.00092 19.3 3.1 0.0016 18.5 2.1 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF4294 PF14127.1 gi|298675712|ref|YP_003727462.1| - 0.0036 16.9 0.4 0.0069 16.0 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4294) DUF2400 PF09674.5 gi|298675712|ref|YP_003727462.1| - 0.041 13.5 0.4 0.35 10.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) DUF3349 PF11829.3 gi|298675712|ref|YP_003727462.1| - 0.048 14.0 0.0 0.13 12.7 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3349) Fzo_mitofusin PF04799.8 gi|298675712|ref|YP_003727462.1| - 0.19 11.1 0.6 0.37 10.1 0.1 1.6 2 0 0 2 2 2 0 fzo-like conserved region TPP_enzyme_C PF02775.16 gi|298675713|ref|YP_003727463.1| - 2.3e-26 92.2 0.1 3.1e-26 91.7 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|298675714|ref|YP_003727464.1| - 7e-67 225.2 0.0 9.3e-67 224.8 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|298675714|ref|YP_003727464.1| - 5e-08 32.9 0.1 1.2e-07 31.7 0.1 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|298675715|ref|YP_003727465.1| - 7.9e-15 53.7 12.9 5.1e-08 32.1 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675715|ref|YP_003727465.1| - 8.2e-12 44.7 20.0 3.9e-09 36.1 7.5 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675715|ref|YP_003727465.1| - 1.8e-11 43.6 5.9 2.5e-11 43.2 4.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675715|ref|YP_003727465.1| - 6.2e-10 39.3 8.8 1.1e-09 38.4 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675715|ref|YP_003727465.1| - 1.1e-09 37.6 11.3 1.9e-05 24.3 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298675715|ref|YP_003727465.1| - 5.2e-09 36.2 10.3 5.2e-09 36.2 7.1 1.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675715|ref|YP_003727465.1| - 1.4e-08 34.1 9.7 0.00046 19.9 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298675715|ref|YP_003727465.1| - 2.3e-07 31.4 10.7 0.00066 20.3 1.3 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|298675715|ref|YP_003727465.1| - 0.00014 21.8 12.7 0.0066 16.4 8.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675715|ref|YP_003727465.1| - 0.00017 21.6 15.5 0.023 15.0 1.0 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298675715|ref|YP_003727465.1| - 0.00079 19.7 12.2 0.042 14.2 1.4 2.2 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|298675715|ref|YP_003727465.1| - 0.0024 17.7 3.2 0.003 17.4 2.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298675715|ref|YP_003727465.1| - 0.004 17.5 11.9 0.11 12.8 0.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298675715|ref|YP_003727465.1| - 0.012 16.1 13.7 0.42 11.1 3.0 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298675715|ref|YP_003727465.1| - 0.032 14.6 14.5 0.068 13.5 1.2 2.7 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298675715|ref|YP_003727465.1| - 0.05 14.1 17.0 0.65 10.7 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|298675716|ref|YP_003727466.1| - 5.4e-42 143.6 0.1 6.3e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AAA PF00004.24 gi|298675717|ref|YP_003727467.1| - 9e-44 148.8 0.0 1.8e-43 147.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|298675717|ref|YP_003727467.1| - 2.3e-07 31.6 0.1 1.4e-06 29.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|298675717|ref|YP_003727467.1| - 3.1e-07 29.6 0.0 6.6e-07 28.6 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|298675717|ref|YP_003727467.1| - 4.4e-07 30.0 0.1 0.00011 22.3 0.1 2.8 2 1 0 2 2 1 1 AAA domain AAA_2 PF07724.9 gi|298675717|ref|YP_003727467.1| - 8.6e-06 25.7 0.0 2.1e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|298675717|ref|YP_003727467.1| - 1.5e-05 24.9 0.0 5.8e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298675717|ref|YP_003727467.1| - 1.5e-05 25.0 0.0 0.00049 20.1 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain TIP49 PF06068.8 gi|298675717|ref|YP_003727467.1| - 1.9e-05 23.6 0.0 3.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 TIP49 C-terminus RNA_helicase PF00910.17 gi|298675717|ref|YP_003727467.1| - 4e-05 23.7 0.0 0.011 15.9 0.0 2.7 2 1 0 2 2 2 1 RNA helicase AAA_33 PF13671.1 gi|298675717|ref|YP_003727467.1| - 0.00011 22.0 0.0 0.00021 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|298675717|ref|YP_003727467.1| - 0.00023 20.4 0.2 0.0011 18.2 0.1 2.0 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|298675717|ref|YP_003727467.1| - 0.00033 19.7 0.0 0.00062 18.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|298675717|ref|YP_003727467.1| - 0.00034 20.9 0.2 0.0012 19.1 0.0 2.2 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|298675717|ref|YP_003727467.1| - 0.00056 19.3 0.1 0.0012 18.2 0.0 1.5 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|298675717|ref|YP_003727467.1| - 0.00073 19.2 0.1 0.0042 16.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ResIII PF04851.10 gi|298675717|ref|YP_003727467.1| - 0.00088 19.1 0.0 0.0019 18.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|298675717|ref|YP_003727467.1| - 0.00094 18.8 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|298675717|ref|YP_003727467.1| - 0.003 17.5 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|298675717|ref|YP_003727467.1| - 0.013 15.1 0.1 0.39 10.3 0.0 2.2 1 1 1 2 2 2 0 NACHT domain DUF815 PF05673.8 gi|298675717|ref|YP_003727467.1| - 0.019 13.9 0.0 0.033 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PhoH PF02562.11 gi|298675717|ref|YP_003727467.1| - 0.02 14.0 0.0 0.073 12.2 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activat PF00158.21 gi|298675717|ref|YP_003727467.1| - 0.028 13.9 0.0 0.15 11.5 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|298675717|ref|YP_003727467.1| - 0.033 13.7 0.1 0.076 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|298675717|ref|YP_003727467.1| - 0.034 13.2 0.3 1.4 8.0 0.0 2.4 1 1 0 2 2 2 0 KaiC DUF2075 PF09848.4 gi|298675717|ref|YP_003727467.1| - 0.036 13.0 0.1 0.77 8.6 0.1 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|298675717|ref|YP_003727467.1| - 0.04 13.3 0.3 0.21 10.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain CPT PF07931.7 gi|298675717|ref|YP_003727467.1| - 0.043 13.4 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Sigma54_activ_2 PF14532.1 gi|298675717|ref|YP_003727467.1| - 0.065 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|298675717|ref|YP_003727467.1| - 0.068 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|298675717|ref|YP_003727467.1| - 0.075 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter SKI PF01202.17 gi|298675717|ref|YP_003727467.1| - 0.08 12.8 0.1 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase KTI12 PF08433.5 gi|298675717|ref|YP_003727467.1| - 0.089 11.9 0.2 0.94 8.6 0.0 2.5 2 1 1 3 3 3 0 Chromatin associated protein KTI12 RNA_binding PF01877.12 gi|298675718|ref|YP_003727468.1| - 1.4e-22 79.9 0.1 3.1e-22 78.8 0.0 1.6 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.1 gi|298675718|ref|YP_003727468.1| - 1.6e-11 45.0 0.6 4.6e-11 43.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298675718|ref|YP_003727468.1| - 8.3e-11 42.3 0.7 1.8e-10 41.2 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|298675718|ref|YP_003727468.1| - 1.3e-05 25.0 0.0 4.1e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain CoaE PF01121.15 gi|298675718|ref|YP_003727468.1| - 0.0061 15.9 0.3 0.67 9.3 0.0 2.9 3 0 0 3 3 3 1 Dephospho-CoA kinase ADK PF00406.17 gi|298675718|ref|YP_003727468.1| - 0.0065 16.3 0.3 0.015 15.1 0.2 1.9 1 1 0 1 1 1 1 Adenylate kinase AP_endonuc_2 PF01261.19 gi|298675719|ref|YP_003727469.1| - 5.3e-36 123.9 0.0 6.3e-36 123.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AAA_10 PF12846.2 gi|298675720|ref|YP_003727470.1| - 1.3e-27 97.0 0.1 6.7e-27 94.7 0.1 1.9 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|298675720|ref|YP_003727470.1| - 2e-13 50.7 0.0 1.7e-12 47.6 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|298675720|ref|YP_003727470.1| - 9.7e-13 47.2 0.0 2e-08 33.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|298675720|ref|YP_003727470.1| - 1.3e-08 34.5 0.0 0.0027 17.2 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|298675720|ref|YP_003727470.1| - 2.4e-05 23.1 0.0 0.00021 20.0 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|298675720|ref|YP_003727470.1| - 0.00011 22.4 0.4 0.75 9.9 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298675720|ref|YP_003727470.1| - 0.00071 19.7 0.0 0.018 15.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|298675720|ref|YP_003727470.1| - 0.00087 19.1 0.1 0.076 12.8 0.0 2.8 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|298675720|ref|YP_003727470.1| - 0.00095 19.3 0.1 0.0019 18.3 0.1 1.5 1 0 0 1 1 1 1 RNA helicase DEAD PF00270.24 gi|298675720|ref|YP_003727470.1| - 0.0034 16.9 0.0 2.5 7.5 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Zot PF05707.7 gi|298675720|ref|YP_003727470.1| - 0.0062 16.0 0.0 0.034 13.6 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|298675720|ref|YP_003727470.1| - 0.016 15.1 0.0 0.33 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain T2SE PF00437.15 gi|298675720|ref|YP_003727470.1| - 0.043 12.7 0.0 0.079 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|298675720|ref|YP_003727470.1| - 0.07 12.2 0.0 0.25 10.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_17 PF13207.1 gi|298675720|ref|YP_003727470.1| - 0.087 13.6 0.0 0.39 11.5 0.0 2.2 1 1 0 1 1 1 0 AAA domain NurA PF09376.5 gi|298675721|ref|YP_003727471.1| - 1.8e-21 76.7 0.0 2.5e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 NurA domain SSF PF00474.12 gi|298675722|ref|YP_003727472.1| - 3.5e-37 128.0 35.7 3.5e-37 128.0 24.8 2.0 3 0 0 3 3 3 1 Sodium:solute symporter family DUF2976 PF11190.3 gi|298675722|ref|YP_003727472.1| - 0.027 13.9 0.1 0.027 13.9 0.0 5.0 3 2 4 7 7 7 0 Protein of unknown function (DUF2976) OrfB_Zn_ribbon PF07282.6 gi|298675724|ref|YP_003727474.1| - 6e-25 86.6 3.4 1.6e-24 85.2 0.8 2.6 2 1 1 3 3 3 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675724|ref|YP_003727474.1| - 5.7e-17 61.8 3.2 1e-16 61.0 2.2 1.4 1 0 0 1 1 1 1 Probable transposase Tnp_zf-ribbon_2 PF13842.1 gi|298675724|ref|YP_003727474.1| - 0.013 15.8 6.1 0.03 14.7 4.2 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF2578 PF10843.3 gi|298675724|ref|YP_003727474.1| - 0.037 13.7 0.6 0.037 13.7 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2578) UPF0547 PF10571.4 gi|298675724|ref|YP_003727474.1| - 0.069 12.8 1.0 2.2 8.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HTH_OrfB_IS605 PF12323.3 gi|298675724|ref|YP_003727474.1| - 0.071 12.4 0.4 0.37 10.1 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DNA_RNApol_7kD PF03604.8 gi|298675724|ref|YP_003727474.1| - 0.48 9.9 5.2 1.7 8.2 3.6 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|298675724|ref|YP_003727474.1| - 0.89 8.9 3.0 21 4.5 0.4 2.4 1 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|298675724|ref|YP_003727474.1| - 1.7 8.4 6.1 4 7.3 4.3 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298675724|ref|YP_003727474.1| - 8.1 6.0 7.5 11 5.6 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lactamase_B_2 PF12706.2 gi|298675725|ref|YP_003727475.1| - 1.3e-22 80.3 1.1 1.7e-22 79.9 0.7 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|298675725|ref|YP_003727475.1| - 2.3e-21 76.3 0.6 3.2e-21 75.8 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|298675725|ref|YP_003727475.1| - 0.00082 19.1 0.3 0.0014 18.3 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AAA PF00004.24 gi|298675726|ref|YP_003727476.1| - 1.2e-37 129.1 0.1 1.2e-36 125.8 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|298675726|ref|YP_003727476.1| - 1.1e-07 31.6 0.3 9.7e-07 28.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|298675726|ref|YP_003727476.1| - 3.2e-06 27.2 1.5 0.0035 17.3 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|298675726|ref|YP_003727476.1| - 4.9e-06 27.3 0.8 6.6e-05 23.7 0.1 3.1 2 2 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|298675726|ref|YP_003727476.1| - 1.9e-05 23.7 0.1 4.1e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|298675726|ref|YP_003727476.1| - 0.00019 21.5 1.1 0.016 15.3 0.2 2.9 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|298675726|ref|YP_003727476.1| - 0.00073 18.6 0.1 0.0023 17.0 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|298675726|ref|YP_003727476.1| - 0.0014 18.9 0.7 0.0067 16.7 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|298675726|ref|YP_003727476.1| - 0.0014 18.5 0.0 0.0041 17.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|298675726|ref|YP_003727476.1| - 0.0015 18.1 0.2 0.005 16.5 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_28 PF13521.1 gi|298675726|ref|YP_003727476.1| - 0.0026 17.7 0.6 0.0089 15.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_2 PF07724.9 gi|298675726|ref|YP_003727476.1| - 0.0054 16.6 1.5 0.044 13.7 0.0 3.0 3 1 0 3 3 2 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|298675726|ref|YP_003727476.1| - 0.0072 15.0 0.0 0.02 13.6 0.0 1.8 2 0 0 2 2 2 1 TIP49 C-terminus AAA_25 PF13481.1 gi|298675726|ref|YP_003727476.1| - 0.0072 15.7 0.4 0.98 8.7 0.1 2.8 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|298675726|ref|YP_003727476.1| - 0.01 15.7 0.1 0.038 13.8 0.0 2.1 2 1 1 3 3 2 0 AAA domain SKI PF01202.17 gi|298675726|ref|YP_003727476.1| - 0.014 15.3 0.5 0.049 13.4 0.0 2.3 3 0 0 3 3 2 0 Shikimate kinase IstB_IS21 PF01695.12 gi|298675726|ref|YP_003727476.1| - 0.018 14.4 0.0 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ResIII PF04851.10 gi|298675726|ref|YP_003727476.1| - 0.022 14.5 0.2 0.098 12.4 0.0 2.1 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.1 gi|298675726|ref|YP_003727476.1| - 0.029 14.4 0.0 0.073 13.1 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|298675726|ref|YP_003727476.1| - 0.03 13.7 1.8 8 5.8 0.0 3.2 2 1 1 3 3 3 0 FtsK/SpoIIIE family Sigma54_activat PF00158.21 gi|298675726|ref|YP_003727476.1| - 0.036 13.5 0.0 0.094 12.1 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|298675726|ref|YP_003727476.1| - 0.036 13.2 0.2 0.089 11.9 0.1 1.8 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|298675726|ref|YP_003727476.1| - 0.049 13.2 0.1 13 5.3 0.0 2.4 2 0 0 2 2 2 0 NACHT domain AAA_3 PF07726.6 gi|298675726|ref|YP_003727476.1| - 0.062 12.9 0.6 0.17 11.5 0.0 2.2 3 1 0 3 3 1 0 ATPase family associated with various cellular activities (AAA) CPT PF07931.7 gi|298675726|ref|YP_003727476.1| - 0.083 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein MMR_HSR1 PF01926.18 gi|298675726|ref|YP_003727476.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF1922 PF09082.5 gi|298675727|ref|YP_003727477.1| - 4.5e-05 23.4 2.1 7.5e-05 22.7 1.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) DUF2296 PF10058.4 gi|298675727|ref|YP_003727477.1| - 0.01 15.5 1.6 0.04 13.6 1.4 1.7 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) OrfB_Zn_ribbon PF07282.6 gi|298675727|ref|YP_003727477.1| - 0.016 14.8 1.3 0.031 13.9 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|298675727|ref|YP_003727477.1| - 0.023 14.6 1.0 0.082 12.8 0.7 2.0 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|298675727|ref|YP_003727477.1| - 0.049 13.4 2.5 0.086 12.6 1.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-CHY PF05495.7 gi|298675727|ref|YP_003727477.1| - 0.09 12.9 4.0 0.12 12.4 2.1 1.7 2 0 0 2 2 2 0 CHY zinc finger HypA PF01155.14 gi|298675727|ref|YP_003727477.1| - 0.13 11.9 1.0 0.25 11.0 0.7 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ribosomal_S27e PF01667.12 gi|298675727|ref|YP_003727477.1| - 0.14 11.6 2.5 0.26 10.8 1.7 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 eIF-5_eIF-2B PF01873.12 gi|298675727|ref|YP_003727477.1| - 0.34 10.5 4.1 0.41 10.3 1.9 1.8 2 0 0 2 2 2 0 Domain found in IF2B/IF5 DNA_RNApol_7kD PF03604.8 gi|298675727|ref|YP_003727477.1| - 0.75 9.3 4.8 2.1 7.8 3.3 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|298675727|ref|YP_003727477.1| - 9.1 5.9 6.7 9.8 5.8 0.8 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Acetyltransf_1 PF00583.19 gi|298675728|ref|YP_003727478.1| - 2.8e-16 59.3 0.3 3.7e-16 58.9 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|298675728|ref|YP_003727478.1| - 2.3e-12 46.9 0.6 3.2e-12 46.4 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|298675728|ref|YP_003727478.1| - 8.5e-09 35.5 0.0 1.1e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|298675728|ref|YP_003727478.1| - 1.5e-05 25.0 0.8 1.5e-05 25.0 0.6 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|298675728|ref|YP_003727478.1| - 0.0026 17.6 0.0 0.01 15.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|298675728|ref|YP_003727478.1| - 0.0093 16.1 0.1 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|298675728|ref|YP_003727478.1| - 0.019 14.8 0.1 0.034 14.0 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|298675728|ref|YP_003727478.1| - 0.03 13.6 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Prenyltransf PF01255.14 gi|298675729|ref|YP_003727479.1| - 9.3e-33 113.2 0.1 2.9e-30 105.0 0.0 2.0 1 1 0 2 2 2 2 Putative undecaprenyl diphosphate synthase MMR_HSR1_C PF08438.5 gi|298675730|ref|YP_003727480.1| - 7.7e-34 116.2 0.3 2.1e-33 114.8 0.1 1.8 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|298675730|ref|YP_003727480.1| - 3.5e-15 55.9 0.0 1.9e-14 53.5 0.0 2.2 1 1 1 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|298675730|ref|YP_003727480.1| - 2.3e-14 52.9 0.0 4.9e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|298675730|ref|YP_003727480.1| - 4.4e-10 39.0 1.0 7.5e-07 28.5 0.0 2.7 3 0 0 3 3 3 2 Ferrous iron transport protein B ATP_bind_1 PF03029.12 gi|298675730|ref|YP_003727480.1| - 0.014 14.9 0.5 0.22 11.0 0.1 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|298675730|ref|YP_003727480.1| - 0.052 12.9 1.1 1.2 8.5 0.1 2.5 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain FAD_binding_4 PF01565.18 gi|298675732|ref|YP_003727482.1| - 8.4e-39 132.2 0.2 4.1e-38 130.0 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain CCG PF02754.11 gi|298675732|ref|YP_003727482.1| - 3.4e-32 110.2 2.1 4.3e-16 58.6 0.2 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|298675732|ref|YP_003727482.1| - 7.2e-09 35.8 7.2 2.4e-08 34.1 5.0 2.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675732|ref|YP_003727482.1| - 5.3e-06 26.3 6.6 1.5e-05 24.9 4.6 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675732|ref|YP_003727482.1| - 0.0057 17.0 5.0 0.0057 17.0 3.5 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675732|ref|YP_003727482.1| - 0.0078 16.4 7.1 0.011 15.9 3.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675732|ref|YP_003727482.1| - 0.17 11.7 11.9 0.27 11.0 6.8 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain Cpn60_TCP1 PF00118.19 gi|298675733|ref|YP_003727483.1| - 2.9e-170 567.0 15.9 3.3e-170 566.8 11.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TrkA_C PF02080.16 gi|298675734|ref|YP_003727484.1| - 1.2e-14 53.6 0.1 1.9e-14 53.0 0.1 1.3 1 0 0 1 1 1 1 TrkA-C domain DUF1012 PF06241.7 gi|298675734|ref|YP_003727484.1| - 0.0039 16.7 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1012) DUF2678 PF10856.3 gi|298675734|ref|YP_003727484.1| - 0.02 14.6 0.9 0.04 13.6 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2678) NfeD PF01957.13 gi|298675734|ref|YP_003727484.1| - 4.1 7.5 8.5 7.9 6.6 3.7 2.2 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding bPH_1 PF08000.6 gi|298675735|ref|YP_003727485.1| - 2.5e-06 27.1 0.1 5.2e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain bPH_3 PF14470.1 gi|298675735|ref|YP_003727485.1| - 0.00038 20.6 1.1 0.0012 19.0 0.1 2.2 3 0 0 3 3 3 1 Bacterial PH domain Gram_pos_anchor PF00746.16 gi|298675735|ref|YP_003727485.1| - 0.11 12.3 3.3 0.39 10.5 0.0 2.2 2 0 0 2 2 2 0 Gram positive anchor DUF3098 PF11297.3 gi|298675735|ref|YP_003727485.1| - 0.37 10.5 5.8 14 5.5 4.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) BioY PF02632.9 gi|298675736|ref|YP_003727486.1| - 2e-45 154.1 21.6 2.9e-45 153.5 15.0 1.2 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|298675736|ref|YP_003727486.1| - 5e-05 23.2 30.7 0.00055 19.8 6.4 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3816) Pox_A9 PF04835.7 gi|298675736|ref|YP_003727486.1| - 0.89 9.5 5.5 1.5 8.7 0.2 2.6 2 0 0 2 2 2 0 A9 protein conserved region IBV_3C PF03620.8 gi|298675736|ref|YP_003727486.1| - 2.8 7.9 5.3 1 9.2 0.3 2.5 1 1 2 3 3 3 0 IBV 3C protein ABC_tran PF00005.22 gi|298675737|ref|YP_003727487.1| - 4.8e-32 111.1 0.1 7.2e-32 110.5 0.1 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|298675737|ref|YP_003727487.1| - 4.7e-13 48.8 0.9 8.5e-13 48.0 0.6 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|298675737|ref|YP_003727487.1| - 1.4e-12 48.1 0.0 4e-08 33.5 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|298675737|ref|YP_003727487.1| - 1e-05 24.8 0.8 0.019 14.0 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|298675737|ref|YP_003727487.1| - 2.1e-05 24.1 0.3 0.018 14.4 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|298675737|ref|YP_003727487.1| - 2.8e-05 23.5 0.0 5.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|298675737|ref|YP_003727487.1| - 7.7e-05 22.7 0.0 0.00039 20.4 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|298675737|ref|YP_003727487.1| - 0.00012 22.2 0.3 0.0011 19.1 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|298675737|ref|YP_003727487.1| - 0.00014 21.2 0.0 0.027 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|298675737|ref|YP_003727487.1| - 0.00045 19.9 0.5 0.43 10.2 0.0 2.2 2 0 0 2 2 2 2 NTPase AAA_14 PF13173.1 gi|298675737|ref|YP_003727487.1| - 0.00058 19.7 0.6 0.56 10.1 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|298675737|ref|YP_003727487.1| - 0.0013 19.1 0.7 0.002 18.5 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|298675737|ref|YP_003727487.1| - 0.0018 18.0 0.0 0.02 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|298675737|ref|YP_003727487.1| - 0.0021 17.2 0.1 0.0034 16.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|298675737|ref|YP_003727487.1| - 0.0022 18.1 0.6 0.0096 16.0 0.0 2.1 2 0 0 2 2 2 1 RNA helicase KaiC PF06745.8 gi|298675737|ref|YP_003727487.1| - 0.0025 16.9 0.4 1.5 7.8 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA PF00004.24 gi|298675737|ref|YP_003727487.1| - 0.0061 16.7 0.2 3.7 7.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|298675737|ref|YP_003727487.1| - 0.0073 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain NB-ARC PF00931.17 gi|298675737|ref|YP_003727487.1| - 0.0077 15.1 0.2 0.051 12.4 0.1 2.1 2 1 0 2 2 2 1 NB-ARC domain PduV-EutP PF10662.4 gi|298675737|ref|YP_003727487.1| - 0.026 14.0 0.3 0.2 11.1 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Methyltransf_32 PF13679.1 gi|298675737|ref|YP_003727487.1| - 0.027 14.1 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain LNS2 PF08235.8 gi|298675737|ref|YP_003727487.1| - 0.03 13.8 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 LNS2 (Lipin/Ned1/Smp2) Mg_chelatase PF01078.16 gi|298675737|ref|YP_003727487.1| - 0.034 13.2 0.0 0.057 12.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|298675737|ref|YP_003727487.1| - 0.04 12.6 1.5 0.097 11.3 1.1 1.8 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein ArgK PF03308.11 gi|298675737|ref|YP_003727487.1| - 0.042 12.6 0.0 0.075 11.7 0.0 1.4 1 1 0 1 1 1 0 ArgK protein Miro PF08477.8 gi|298675737|ref|YP_003727487.1| - 0.042 14.3 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 Miro-like protein Acid_phosphat_B PF03767.9 gi|298675737|ref|YP_003727487.1| - 0.06 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) MobB PF03205.9 gi|298675737|ref|YP_003727487.1| - 0.072 12.7 0.4 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|298675737|ref|YP_003727487.1| - 0.075 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 MutS domain V ATP_bind_1 PF03029.12 gi|298675737|ref|YP_003727487.1| - 0.092 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.1 gi|298675737|ref|YP_003727487.1| - 0.097 12.5 0.5 0.73 9.7 0.4 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DEAD PF00270.24 gi|298675737|ref|YP_003727487.1| - 0.12 11.9 0.1 0.88 9.0 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase ABC_ATPase PF09818.4 gi|298675737|ref|YP_003727487.1| - 0.12 10.9 0.5 2.2 6.7 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class DUF910 PF06014.6 gi|298675737|ref|YP_003727487.1| - 0.88 9.5 3.3 0.62 10.0 0.4 2.2 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF910) ABC_tran PF00005.22 gi|298675738|ref|YP_003727488.1| - 3.9e-31 108.1 0.0 4.9e-30 104.6 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|298675738|ref|YP_003727488.1| - 5.4e-09 36.4 0.3 8.4e-05 22.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|298675738|ref|YP_003727488.1| - 4.6e-05 22.8 0.0 9e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|298675738|ref|YP_003727488.1| - 0.00035 20.4 0.0 0.0078 16.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|298675738|ref|YP_003727488.1| - 0.0021 16.8 0.0 0.0033 16.2 0.0 1.3 1 0 0 1 1 1 1 ArgK protein SMC_N PF02463.14 gi|298675738|ref|YP_003727488.1| - 0.0024 17.1 0.3 0.58 9.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|298675738|ref|YP_003727488.1| - 0.0027 16.8 0.6 0.054 12.5 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain CoaE PF01121.15 gi|298675738|ref|YP_003727488.1| - 0.0033 16.8 0.0 0.0052 16.1 0.0 1.4 1 0 0 1 1 1 1 Dephospho-CoA kinase AAA_18 PF13238.1 gi|298675738|ref|YP_003727488.1| - 0.0038 17.5 0.0 0.035 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|298675738|ref|YP_003727488.1| - 0.017 14.5 0.0 0.39 10.1 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|298675738|ref|YP_003727488.1| - 0.019 15.7 0.0 0.034 14.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|298675738|ref|YP_003727488.1| - 0.022 15.1 0.2 0.034 14.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|298675738|ref|YP_003727488.1| - 0.049 13.7 0.2 0.31 11.1 0.1 2.4 1 1 1 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|298675738|ref|YP_003727488.1| - 0.053 13.2 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|298675738|ref|YP_003727488.1| - 0.064 12.9 0.1 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 NTPase KAP_NTPase PF07693.9 gi|298675738|ref|YP_003727488.1| - 0.11 11.5 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain HTH_5 PF01022.15 gi|298675739|ref|YP_003727489.1| - 7.5e-13 47.9 1.9 1.4e-12 47.0 1.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|298675739|ref|YP_003727489.1| - 0.00013 21.3 0.2 0.02 14.4 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_20 PF12840.2 gi|298675739|ref|YP_003727489.1| - 0.00019 21.1 0.1 0.00029 20.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|298675739|ref|YP_003727489.1| - 0.07 12.8 0.1 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF318 PF03773.8 gi|298675740|ref|YP_003727490.1| - 5.5e-50 170.1 10.3 7.7e-50 169.6 7.1 1.2 1 0 0 1 1 1 1 Predicted permease Chordopox_A13L PF05961.6 gi|298675740|ref|YP_003727490.1| - 10 6.1 7.3 24 4.9 0.4 2.8 1 1 1 2 2 2 0 Chordopoxvirus A13L protein PspC PF04024.7 gi|298675741|ref|YP_003727491.1| - 1e-24 85.7 0.1 1e-24 85.7 0.1 2.4 2 1 0 2 2 1 1 PspC domain DUF2370 PF10176.4 gi|298675741|ref|YP_003727491.1| - 6.6e-05 22.3 0.4 9.3e-05 21.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2370) MFS_1 PF07690.11 gi|298675741|ref|YP_003727491.1| - 0.0011 17.8 0.7 0.0018 17.1 0.5 1.4 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF607 PF04678.8 gi|298675741|ref|YP_003727491.1| - 0.017 15.0 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF607 DUF4064 PF13273.1 gi|298675741|ref|YP_003727491.1| - 0.021 14.9 3.5 0.071 13.2 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF2371 PF10177.4 gi|298675741|ref|YP_003727491.1| - 0.038 13.8 0.0 0.1 12.5 0.0 1.7 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) DUF4131 PF13567.1 gi|298675741|ref|YP_003727491.1| - 0.067 12.5 1.0 9.4 5.5 2.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Mem_trans PF03547.13 gi|298675741|ref|YP_003727491.1| - 0.11 10.8 1.2 0.57 8.4 0.0 2.0 1 1 1 2 2 2 0 Membrane transport protein DUF2116 PF09889.4 gi|298675741|ref|YP_003727491.1| - 0.54 10.1 0.0 0.54 10.1 0.0 2.7 3 1 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF872 PF05915.7 gi|298675741|ref|YP_003727491.1| - 0.59 9.9 4.7 0.19 11.5 0.6 2.2 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF2207 PF09972.4 gi|298675741|ref|YP_003727491.1| - 1 7.8 4.6 0.2 10.2 0.2 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF912 PF06024.7 gi|298675741|ref|YP_003727491.1| - 2.5 8.2 8.3 0.093 12.7 0.4 2.4 2 1 1 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF202 PF02656.10 gi|298675741|ref|YP_003727491.1| - 2.7 8.2 5.2 1.7 8.9 0.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF202) CD20 PF04103.10 gi|298675741|ref|YP_003727491.1| - 6.1 6.7 6.5 67 3.3 0.0 2.1 1 1 1 2 2 2 0 CD20-like family DUF123 PF01986.11 gi|298675742|ref|YP_003727492.1| - 1.2e-28 99.0 0.0 1.5e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.19 gi|298675742|ref|YP_003727492.1| - 0.0052 17.1 0.2 0.01 16.2 0.2 1.5 1 1 0 1 1 1 1 GIY-YIG catalytic domain Baculo_VP39 PF04501.7 gi|298675742|ref|YP_003727492.1| - 0.077 11.9 0.2 0.12 11.3 0.2 1.2 1 0 0 1 1 1 0 Baculovirus major capsid protein VP39 Multi_Drug_Res PF00893.14 gi|298675743|ref|YP_003727493.1| - 1.2e-28 99.4 8.0 1.5e-28 99.0 5.6 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|298675743|ref|YP_003727493.1| - 0.00068 19.6 11.5 0.0014 18.7 8.1 1.4 1 1 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|298675743|ref|YP_003727493.1| - 0.0022 18.1 10.9 0.0036 17.4 7.5 1.4 1 1 0 1 1 1 1 Multidrug resistance efflux transporter Nuc_sug_transp PF04142.10 gi|298675743|ref|YP_003727493.1| - 0.036 13.1 1.6 0.49 9.4 0.1 1.9 1 1 1 2 2 2 0 Nucleotide-sugar transporter DUF4044 PF13253.1 gi|298675743|ref|YP_003727493.1| - 0.055 12.6 3.4 0.12 11.5 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) UAA PF08449.6 gi|298675743|ref|YP_003727493.1| - 0.096 11.5 5.0 0.13 11.1 3.4 1.2 1 1 0 1 1 1 0 UAA transporter family CD20 PF04103.10 gi|298675743|ref|YP_003727493.1| - 0.16 11.9 6.5 0.29 11.0 4.5 1.4 1 0 0 1 1 1 0 CD20-like family DUF3989 PF13150.1 gi|298675743|ref|YP_003727493.1| - 0.87 9.0 2.7 1.1 8.7 0.1 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3989) DUF202 PF02656.10 gi|298675743|ref|YP_003727493.1| - 1 9.6 7.0 0.39 10.9 0.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF202) UPF0047 PF01894.12 gi|298675744|ref|YP_003727494.1| - 2.6e-41 140.1 0.0 2.9e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 CM_1 PF07736.6 gi|298675744|ref|YP_003727494.1| - 0.15 12.1 0.3 3.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Chorismate mutase type I AP_endonuc_2 PF01261.19 gi|298675745|ref|YP_003727495.1| - 6.2e-05 22.3 0.0 0.00012 21.3 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1367 PF07105.6 gi|298675745|ref|YP_003727495.1| - 0.1 11.9 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1367) Response_reg PF00072.19 gi|298675746|ref|YP_003727496.1| - 2.6e-25 88.6 0.2 2.9e-25 88.4 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Baculo_11_kDa PF06143.6 gi|298675747|ref|YP_003727497.1| - 0.013 14.8 0.2 0.026 13.8 0.2 1.5 1 0 0 1 1 1 0 Baculovirus 11 kDa family ODV-E18 PF10717.4 gi|298675747|ref|YP_003727497.1| - 0.018 14.4 1.7 0.059 12.8 1.2 1.8 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 Ribosomal_S11 PF00411.14 gi|298675747|ref|YP_003727497.1| - 0.087 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S11 HTH_3 PF01381.17 gi|298675748|ref|YP_003727498.1| - 0.0015 18.2 0.2 0.0032 17.2 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix DUF2811 PF10929.3 gi|298675748|ref|YP_003727498.1| - 0.0016 18.4 0.0 0.0037 17.2 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2811) HTH_38 PF13936.1 gi|298675748|ref|YP_003727498.1| - 0.005 16.3 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4473 PF14747.1 gi|298675748|ref|YP_003727498.1| - 0.0069 16.5 0.1 0.013 15.6 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4473) HTH_24 PF13412.1 gi|298675748|ref|YP_003727498.1| - 0.0083 15.4 0.0 0.019 14.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|298675748|ref|YP_003727498.1| - 0.011 15.4 0.1 0.033 13.8 0.0 1.8 2 1 0 2 2 2 0 Homeodomain-like domain DUF2481 PF10654.4 gi|298675748|ref|YP_003727498.1| - 0.019 14.6 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) ATP-cone PF03477.11 gi|298675748|ref|YP_003727498.1| - 0.02 15.3 0.2 0.04 14.3 0.1 1.5 2 0 0 2 2 2 0 ATP cone domain HTH_37 PF13744.1 gi|298675748|ref|YP_003727498.1| - 0.021 14.6 0.0 0.053 13.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain P22_Cro PF14549.1 gi|298675748|ref|YP_003727498.1| - 0.023 14.4 0.0 0.074 12.7 0.0 1.8 1 1 1 2 2 2 0 DNA-binding transcriptional regulator Cro HTH_psq PF05225.11 gi|298675748|ref|YP_003727498.1| - 0.038 13.5 0.3 0.077 12.5 0.1 1.7 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_28 PF13518.1 gi|298675748|ref|YP_003727498.1| - 0.076 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|298675748|ref|YP_003727498.1| - 0.078 12.8 0.1 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_31 PF13560.1 gi|298675748|ref|YP_003727498.1| - 0.099 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Cro PF09048.5 gi|298675748|ref|YP_003727498.1| - 0.12 12.0 0.1 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Cro HTH_Tnp_4 PF13613.1 gi|298675748|ref|YP_003727498.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_1 PF00126.22 gi|298675748|ref|YP_003727498.1| - 0.16 11.7 0.1 0.26 11.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GnsAB PF08178.6 gi|298675748|ref|YP_003727498.1| - 0.18 11.4 1.0 4.2 7.0 0.1 2.8 2 2 1 3 3 3 0 GnsA/GnsB family Aminotran_5 PF00266.14 gi|298675749|ref|YP_003727499.1| - 3.6e-96 322.1 0.1 4.2e-96 321.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|298675749|ref|YP_003727499.1| - 5.7e-07 28.8 0.3 9.9e-07 28.1 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|298675749|ref|YP_003727499.1| - 8.6e-07 28.3 0.0 1.2e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|298675749|ref|YP_003727499.1| - 3.8e-05 22.8 0.0 0.00015 20.8 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|298675749|ref|YP_003727499.1| - 0.011 14.1 0.0 0.02 13.3 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Aminotran_3 PF00202.16 gi|298675749|ref|YP_003727499.1| - 0.04 12.7 0.1 0.075 11.8 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-III NifU_N PF01592.11 gi|298675750|ref|YP_003727500.1| - 1.1e-51 174.0 0.1 1.2e-51 173.9 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain MTS PF05175.9 gi|298675750|ref|YP_003727500.1| - 0.037 13.4 0.1 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase small domain CO_deh_flav_C PF03450.12 gi|298675750|ref|YP_003727500.1| - 0.079 12.9 0.1 0.12 12.2 0.0 1.3 1 1 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain Phos_pyr_kin PF08543.7 gi|298675750|ref|YP_003727500.1| - 0.11 11.6 0.1 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase NAD_synthase PF02540.12 gi|298675751|ref|YP_003727501.1| - 3.5e-08 32.6 0.0 8.7e-08 31.3 0.0 1.6 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|298675751|ref|YP_003727501.1| - 0.00012 21.6 0.0 0.00019 21.0 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|298675751|ref|YP_003727501.1| - 0.0022 17.5 0.0 0.012 15.0 0.0 2.1 1 1 1 2 2 2 1 PP-loop family QueC PF06508.8 gi|298675751|ref|YP_003727501.1| - 0.0046 16.2 0.0 0.03 13.6 0.0 2.1 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|298675751|ref|YP_003727501.1| - 0.0046 15.5 0.0 0.1 11.1 0.0 2.2 2 1 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|298675751|ref|YP_003727501.1| - 0.15 11.8 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|298675753|ref|YP_003727503.1| - 1.9e-63 213.4 0.0 3.1e-63 212.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|298675753|ref|YP_003727503.1| - 5.2e-18 65.3 0.0 9.1e-18 64.5 0.0 1.4 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|298675753|ref|YP_003727503.1| - 0.00023 20.5 0.0 0.012 14.9 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|298675753|ref|YP_003727503.1| - 0.00055 18.6 0.0 0.0013 17.3 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|298675753|ref|YP_003727503.1| - 0.12 11.2 0.0 0.27 10.0 0.0 1.7 1 1 0 1 1 1 0 NAD synthase ATP_bind_3 PF01171.15 gi|298675753|ref|YP_003727503.1| - 0.15 11.5 0.0 8.4 5.8 0.0 2.3 2 0 0 2 2 2 0 PP-loop family Asn_synthase PF00733.16 gi|298675753|ref|YP_003727503.1| - 0.17 11.3 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase HMA PF00403.21 gi|298675754|ref|YP_003727504.1| - 5.7e-19 68.0 0.3 6.3e-19 67.8 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hexapep PF00132.19 gi|298675755|ref|YP_003727505.1| - 1.5e-09 36.8 12.0 0.00011 21.5 1.3 4.3 3 2 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|298675755|ref|YP_003727505.1| - 0.0018 18.5 0.0 0.0046 17.1 0.0 1.8 1 1 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|298675755|ref|YP_003727505.1| - 0.12 11.9 15.4 0.083 12.4 1.3 3.8 3 2 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase PALP PF00291.20 gi|298675756|ref|YP_003727506.1| - 1.9e-65 221.1 0.0 2.1e-65 220.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF3798 PF12683.2 gi|298675756|ref|YP_003727506.1| - 0.089 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Usp PF00582.21 gi|298675757|ref|YP_003727507.1| - 2.8e-32 111.8 0.0 3.1e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.10 gi|298675757|ref|YP_003727507.1| - 0.1 13.0 0.2 0.47 10.9 0.1 1.9 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain Dioxygenase_N PF04444.9 gi|298675758|ref|YP_003727508.1| - 0.04 13.8 0.2 0.21 11.6 0.0 2.2 2 0 0 2 2 2 0 Catechol dioxygenase N terminus BCCT PF02028.12 gi|298675759|ref|YP_003727509.1| - 6.4e-185 615.0 43.0 7.3e-185 614.8 29.8 1.0 1 0 0 1 1 1 1 BCCT family transporter TGS PF02824.16 gi|298675760|ref|YP_003727510.1| - 3.2e-19 68.5 0.0 6.4e-19 67.5 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|298675760|ref|YP_003727510.1| - 1.1e-18 67.2 0.0 2.1e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|298675760|ref|YP_003727510.1| - 6.1e-13 48.3 0.1 1.3e-12 47.2 0.1 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|298675760|ref|YP_003727510.1| - 0.00054 19.8 0.1 0.13 12.0 0.1 2.6 1 1 1 2 2 2 1 Dynamin family Miro PF08477.8 gi|298675760|ref|YP_003727510.1| - 0.0057 17.1 0.3 0.03 14.8 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein AIG1 PF04548.11 gi|298675760|ref|YP_003727510.1| - 0.0088 15.1 0.1 0.023 13.8 0.0 1.7 2 0 0 2 2 2 1 AIG1 family AAA_18 PF13238.1 gi|298675760|ref|YP_003727510.1| - 0.01 16.1 0.0 0.03 14.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain Arf PF00025.16 gi|298675760|ref|YP_003727510.1| - 0.025 13.8 0.1 0.062 12.5 0.1 1.8 1 1 0 1 1 1 0 ADP-ribosylation factor family DUF258 PF03193.11 gi|298675760|ref|YP_003727510.1| - 0.026 13.7 0.1 0.046 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|298675760|ref|YP_003727510.1| - 0.039 13.1 0.0 0.071 12.3 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit cobW PF02492.14 gi|298675760|ref|YP_003727510.1| - 0.044 13.2 0.6 1.6 8.1 0.0 2.5 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|298675760|ref|YP_003727510.1| - 0.051 12.3 0.1 0.11 11.2 0.0 1.5 1 0 0 1 1 1 0 ArgK protein AAA_28 PF13521.1 gi|298675760|ref|YP_003727510.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1192 PF06698.6 gi|298675760|ref|YP_003727510.1| - 3.4 7.5 5.7 13 5.6 0.6 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1192) MoeA_N PF03453.12 gi|298675761|ref|YP_003727511.1| - 2.8e-47 160.0 0.0 4.7e-47 159.3 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.2 gi|298675761|ref|YP_003727511.1| - 4.8e-46 156.1 0.0 7.3e-46 155.5 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain MoCF_biosynth PF00994.19 gi|298675761|ref|YP_003727511.1| - 6.9e-30 103.3 0.0 1.2e-29 102.5 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|298675761|ref|YP_003727511.1| - 2.9e-13 49.5 0.0 7.5e-13 48.2 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) Aminotran_4 PF01063.14 gi|298675762|ref|YP_003727512.1| - 3.2e-49 167.5 0.0 3.7e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV AFOR_N PF02730.10 gi|298675763|ref|YP_003727513.1| - 3e-26 92.0 0.0 4.8e-26 91.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|298675763|ref|YP_003727513.1| - 1.3e-09 37.2 0.0 4.2e-09 35.5 0.0 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 OpuAC PF04069.7 gi|298675765|ref|YP_003727515.1| - 3.1e-60 203.6 0.2 3.6e-60 203.4 0.1 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system Conotoxin PF02950.12 gi|298675765|ref|YP_003727515.1| - 0.083 13.6 0.0 0.14 12.9 0.0 1.4 1 0 0 1 1 1 0 Conotoxin DUF61 PF01886.11 gi|298675766|ref|YP_003727516.1| - 4.7e-27 94.4 0.4 5.2e-27 94.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Exc PF07825.6 gi|298675766|ref|YP_003727516.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Excisionase-like protein Ninjurin PF04923.7 gi|298675767|ref|YP_003727517.1| - 0.078 12.7 0.9 0.11 12.2 0.6 1.3 1 1 0 1 1 1 0 Ninjurin Tmemb_185A PF10269.4 gi|298675767|ref|YP_003727517.1| - 0.078 12.5 4.1 0.11 12.1 2.8 1.2 1 0 0 1 1 1 0 Transmembrane Fragile-X-F protein DUF805 PF05656.9 gi|298675767|ref|YP_003727517.1| - 0.13 12.1 2.4 0.17 11.7 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF2975 PF11188.3 gi|298675767|ref|YP_003727517.1| - 0.84 9.3 6.2 0.85 9.3 0.3 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF2975) DUF443 PF04276.7 gi|298675767|ref|YP_003727517.1| - 2.3 7.6 9.9 0.4 10.0 4.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF443) HTH_5 PF01022.15 gi|298675769|ref|YP_003727519.1| - 1.5e-12 47.0 0.1 3.3e-12 45.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|298675769|ref|YP_003727519.1| - 7.5e-10 38.4 0.0 1.2e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|298675769|ref|YP_003727519.1| - 3.9e-06 26.1 0.5 8.4e-06 25.0 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|298675769|ref|YP_003727519.1| - 0.00018 21.4 0.2 0.00068 19.6 0.1 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|298675769|ref|YP_003727519.1| - 0.0002 20.9 0.0 0.0015 18.1 0.0 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|298675769|ref|YP_003727519.1| - 0.0002 20.9 0.1 0.00051 19.6 0.0 1.6 1 0 0 1 1 1 1 MarR family Prominin PF05478.6 gi|298675769|ref|YP_003727519.1| - 0.0019 15.8 0.6 0.002 15.7 0.4 1.1 1 0 0 1 1 1 1 Prominin MarR_2 PF12802.2 gi|298675769|ref|YP_003727519.1| - 0.0092 15.6 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|298675769|ref|YP_003727519.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|298675769|ref|YP_003727519.1| - 0.016 15.0 0.4 0.073 12.8 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix Rrf2 PF02082.15 gi|298675769|ref|YP_003727519.1| - 0.017 15.2 0.0 0.048 13.7 0.0 1.7 2 1 0 2 2 2 0 Transcriptional regulator DUF4430 PF14478.1 gi|298675769|ref|YP_003727519.1| - 0.017 15.1 0.3 0.071 13.1 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) HTH_CodY PF08222.6 gi|298675769|ref|YP_003727519.1| - 0.11 11.9 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_IclR PF09339.5 gi|298675769|ref|YP_003727519.1| - 0.14 11.7 0.0 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain PilJ PF13675.1 gi|298675770|ref|YP_003727520.1| - 4e-06 27.1 0.6 0.017 15.4 0.0 2.6 2 1 0 2 2 2 2 Type IV pili methyl-accepting chemotaxis transducer N-term WXG100 PF06013.7 gi|298675770|ref|YP_003727520.1| - 1.1e-05 25.3 2.4 0.26 11.2 0.0 3.9 6 0 0 6 6 3 2 Proteins of 100 residues with WXG TcdB_N PF12918.2 gi|298675770|ref|YP_003727520.1| - 0.00077 19.4 2.3 1.1 9.3 0.1 2.8 2 0 0 2 2 2 2 TcdB toxin N-terminal helical domain Syntaxin-6_N PF09177.6 gi|298675770|ref|YP_003727520.1| - 0.0017 18.7 17.4 0.12 12.8 2.3 3.2 2 2 0 3 3 2 2 Syntaxin 6, N-terminal TMF_TATA_bd PF12325.3 gi|298675770|ref|YP_003727520.1| - 0.004 16.8 24.9 0.033 13.9 4.3 3.4 1 1 1 3 3 3 2 TATA element modulatory factor 1 TATA binding TPR_MLP1_2 PF07926.7 gi|298675770|ref|YP_003727520.1| - 0.0073 16.0 25.5 0.31 10.7 6.1 2.8 2 1 0 2 2 2 2 TPR/MLP1/MLP2-like protein CENP-B_N PF04218.8 gi|298675770|ref|YP_003727520.1| - 0.0097 15.3 0.1 1.6 8.1 0.0 2.8 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain Laminin_II PF06009.7 gi|298675770|ref|YP_003727520.1| - 0.01 15.5 25.4 0.2 11.4 0.6 3.3 2 2 2 4 4 4 0 Laminin Domain II DUF1107 PF06526.7 gi|298675770|ref|YP_003727520.1| - 0.018 14.8 1.1 8.7 6.2 0.1 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1107) SCO1-SenC PF02630.9 gi|298675770|ref|YP_003727520.1| - 0.038 13.5 0.4 12 5.5 0.0 2.9 2 1 0 2 2 2 0 SCO1/SenC Ded_cyto PF06920.8 gi|298675770|ref|YP_003727520.1| - 0.041 13.1 1.6 5 6.3 0.1 2.5 2 0 0 2 2 2 0 Dedicator of cytokinesis TPD52 PF04201.10 gi|298675770|ref|YP_003727520.1| - 0.044 13.5 18.1 0.32 10.6 3.1 3.0 1 1 0 2 2 2 0 Tumour protein D52 family DUF4286 PF14114.1 gi|298675770|ref|YP_003727520.1| - 0.074 13.3 7.1 3.1 8.1 0.4 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4286) UPF0253 PF06786.7 gi|298675770|ref|YP_003727520.1| - 0.083 13.0 0.9 7.9 6.6 0.0 3.2 4 0 0 4 4 2 0 Uncharacterised protein family (UPF0253) AAA_13 PF13166.1 gi|298675770|ref|YP_003727520.1| - 0.089 11.2 35.4 0.37 9.1 8.2 2.1 1 1 0 2 2 2 0 AAA domain Prominin PF05478.6 gi|298675770|ref|YP_003727520.1| - 0.16 9.4 14.4 0.34 8.4 2.6 2.1 1 1 0 2 2 2 0 Prominin ALMT PF11744.3 gi|298675770|ref|YP_003727520.1| - 0.16 10.5 18.3 0.52 8.9 4.0 2.1 1 1 1 2 2 2 0 Aluminium activated malate transporter MtrB PF05440.7 gi|298675770|ref|YP_003727520.1| - 0.34 10.9 7.5 6.6 6.8 0.3 3.1 2 2 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B End3 PF12761.2 gi|298675770|ref|YP_003727520.1| - 0.36 10.4 16.3 1.6 8.3 2.5 2.6 1 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 Borrelia_lipo_1 PF05714.6 gi|298675770|ref|YP_003727520.1| - 0.36 9.8 24.6 0.58 9.2 1.1 4.3 3 1 1 4 4 4 0 Borrelia burgdorferi virulent strain associated lipoprotein CorA PF01544.13 gi|298675770|ref|YP_003727520.1| - 0.65 8.9 13.0 1.2 8.0 1.4 2.5 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Filament PF00038.16 gi|298675770|ref|YP_003727520.1| - 1.1 8.6 25.3 1.5 8.1 4.6 3.3 1 1 3 4 4 4 0 Intermediate filament protein DUF883 PF05957.8 gi|298675770|ref|YP_003727520.1| - 2.7 8.4 10.3 8.4 6.8 0.1 4.0 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF883) DUF1664 PF07889.7 gi|298675770|ref|YP_003727520.1| - 2.8 7.7 23.0 1.4 8.7 3.0 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) 4HB_MCP_1 PF12729.2 gi|298675770|ref|YP_003727520.1| - 3.2 7.0 12.3 6.1 6.1 2.0 2.6 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction YjcZ PF13990.1 gi|298675770|ref|YP_003727520.1| - 4 6.4 7.8 4 6.5 0.8 2.3 2 1 0 2 2 2 0 YjcZ-like protein STAT_alpha PF01017.15 gi|298675770|ref|YP_003727520.1| - 4.9 6.8 13.2 3.7 7.2 2.3 2.4 2 0 0 2 2 2 0 STAT protein, all-alpha domain Orbi_VP5 PF00901.12 gi|298675770|ref|YP_003727520.1| - 6 4.9 34.3 0.28 9.3 4.4 3.6 2 2 2 4 4 4 0 Orbivirus outer capsid protein VP5 Mnd1 PF03962.10 gi|298675770|ref|YP_003727520.1| - 8.2 6.0 22.4 2.4 7.7 4.0 2.8 1 1 0 2 2 2 0 Mnd1 family DUF1515 PF07439.6 gi|298675770|ref|YP_003727520.1| - 8.6 6.2 9.1 16 5.3 0.6 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF1515) CbiM PF01891.11 gi|298675771|ref|YP_003727521.1| - 2.7e-49 167.5 20.5 3.1e-49 167.3 14.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CarboxypepD_reg PF13620.1 gi|298675772|ref|YP_003727522.1| - 0.0095 15.9 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CbiQ PF02361.11 gi|298675773|ref|YP_003727523.1| - 2.3e-32 112.4 12.5 3.7e-32 111.6 8.7 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|298675774|ref|YP_003727524.1| - 7.5e-28 97.5 0.0 1.9e-27 96.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|298675774|ref|YP_003727524.1| - 3.2e-17 63.4 1.0 2.9e-14 53.7 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|298675774|ref|YP_003727524.1| - 4e-10 39.3 8.1 2.6e-08 33.3 0.1 2.7 3 0 0 3 3 3 2 AAA ATPase domain SMC_N PF02463.14 gi|298675774|ref|YP_003727524.1| - 3.1e-09 36.3 0.4 1.2e-07 31.1 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|298675774|ref|YP_003727524.1| - 7.4e-05 21.4 0.4 0.039 12.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|298675774|ref|YP_003727524.1| - 0.0001 22.6 1.0 0.00065 20.0 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|298675774|ref|YP_003727524.1| - 0.00012 21.5 0.0 0.0017 17.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|298675774|ref|YP_003727524.1| - 0.0023 17.6 0.2 0.0086 15.7 0.2 2.0 1 1 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|298675774|ref|YP_003727524.1| - 0.0029 16.5 0.1 0.0048 15.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_24 PF13479.1 gi|298675774|ref|YP_003727524.1| - 0.0063 16.1 0.1 0.036 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|298675774|ref|YP_003727524.1| - 0.0067 15.8 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|298675774|ref|YP_003727524.1| - 0.0069 16.2 0.1 0.047 13.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675774|ref|YP_003727524.1| - 0.007 16.5 0.2 0.062 13.4 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|298675774|ref|YP_003727524.1| - 0.0075 15.7 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.14 gi|298675774|ref|YP_003727524.1| - 0.014 14.8 0.4 0.05 13.0 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|298675774|ref|YP_003727524.1| - 0.015 14.4 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|298675774|ref|YP_003727524.1| - 0.017 14.6 0.0 0.018 14.5 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|298675774|ref|YP_003727524.1| - 0.017 14.7 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.1 gi|298675774|ref|YP_003727524.1| - 0.021 14.7 0.0 0.054 13.4 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit YqzH PF14164.1 gi|298675774|ref|YP_003727524.1| - 0.029 14.2 0.8 0.095 12.6 0.1 2.1 2 0 0 2 2 2 0 YqzH-like protein BamHI PF02923.10 gi|298675774|ref|YP_003727524.1| - 0.034 14.0 0.2 0.062 13.2 0.1 1.4 1 0 0 1 1 1 0 Restriction endonuclease BamHI AAA_28 PF13521.1 gi|298675774|ref|YP_003727524.1| - 0.036 14.0 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|298675774|ref|YP_003727524.1| - 0.036 14.3 1.0 0.23 11.7 0.3 2.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|298675774|ref|YP_003727524.1| - 0.045 13.9 1.4 0.48 10.6 1.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.4 gi|298675774|ref|YP_003727524.1| - 0.045 13.2 0.1 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation BCA_ABC_TP_C PF12399.3 gi|298675774|ref|YP_003727524.1| - 0.052 13.2 0.0 0.094 12.4 0.0 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter DNA_pol3_a_NII PF11490.3 gi|298675774|ref|YP_003727524.1| - 0.078 12.5 0.8 0.14 11.7 0.0 1.8 2 0 0 2 2 1 0 DNA polymerase III polC-type N-terminus II SRP54 PF00448.17 gi|298675774|ref|YP_003727524.1| - 0.11 11.9 0.4 0.4 10.0 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain OrfB_Zn_ribbon PF07282.6 gi|298675775|ref|YP_003727525.1| - 5.6e-25 86.7 2.7 2.3e-24 84.8 0.7 2.6 2 1 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298675775|ref|YP_003727525.1| - 3.2e-15 56.1 2.4 4.9e-15 55.5 1.5 1.5 1 1 0 1 1 1 1 Probable transposase DUF2578 PF10843.3 gi|298675775|ref|YP_003727525.1| - 0.03 13.9 0.6 0.03 13.9 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2578) DNA_RNApol_7kD PF03604.8 gi|298675775|ref|YP_003727525.1| - 0.046 13.1 6.5 0.15 11.5 4.5 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|298675775|ref|YP_003727525.1| - 0.11 12.3 3.3 0.22 11.3 2.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|298675775|ref|YP_003727525.1| - 0.14 12.5 5.1 0.4 11.1 3.5 1.8 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Zn_Tnp_IS1595 PF12760.2 gi|298675775|ref|YP_003727525.1| - 1.2 9.0 6.8 2.7 7.8 4.7 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|298675775|ref|YP_003727525.1| - 1.3 8.8 4.3 24 4.7 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|298675775|ref|YP_003727525.1| - 1.4 8.6 4.0 3 7.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 B-block_TFIIIC PF04182.7 gi|298675777|ref|YP_003727527.1| - 2.4e-08 33.7 0.3 3.6e-08 33.1 0.2 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|298675777|ref|YP_003727527.1| - 1.3e-06 28.0 0.1 2.2e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|298675777|ref|YP_003727527.1| - 0.00014 21.4 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|298675777|ref|YP_003727527.1| - 0.0022 17.6 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|298675777|ref|YP_003727527.1| - 0.0029 17.9 0.0 0.0042 17.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|298675777|ref|YP_003727527.1| - 0.019 14.3 0.1 0.029 13.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|298675777|ref|YP_003727527.1| - 0.1 12.5 0.2 0.22 11.5 0.2 1.6 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein RNA_pol_Rpc34 PF05158.7 gi|298675777|ref|YP_003727527.1| - 0.59 9.2 5.2 1.1 8.4 0.3 2.0 1 1 1 2 2 2 0 RNA polymerase Rpc34 subunit LSM PF01423.17 gi|298675778|ref|YP_003727528.1| - 3.5e-16 58.5 0.4 3.9e-16 58.3 0.3 1.0 1 0 0 1 1 1 1 LSM domain DUF3467 PF11950.3 gi|298675779|ref|YP_003727529.1| - 5.2e-14 52.0 0.0 7.8e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3467) DEAD PF00270.24 gi|298675780|ref|YP_003727530.1| - 1.4e-26 92.9 0.0 3.8e-26 91.5 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|298675780|ref|YP_003727530.1| - 7.3e-12 44.9 0.0 1.6e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|298675780|ref|YP_003727530.1| - 2.9e-08 33.7 0.1 6e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|298675780|ref|YP_003727530.1| - 0.0013 17.5 0.0 0.0021 16.8 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_34 PF13872.1 gi|298675780|ref|YP_003727530.1| - 0.013 14.3 0.0 0.023 13.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 KaiC PF06745.8 gi|298675781|ref|YP_003727531.1| - 5.6e-13 48.5 0.3 6.7e-13 48.2 0.2 1.1 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|298675781|ref|YP_003727531.1| - 0.00056 18.8 0.2 0.0011 17.9 0.0 1.5 2 0 0 2 2 2 1 PAXNEB protein AAA_25 PF13481.1 gi|298675781|ref|YP_003727531.1| - 0.068 12.5 0.1 0.42 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain PNP_UDP_1 PF01048.15 gi|298675782|ref|YP_003727532.1| - 7.5e-35 119.9 0.0 8.4e-35 119.8 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF373 PF04123.8 gi|298675783|ref|YP_003727533.1| - 3.3e-114 381.5 3.6 3.8e-114 381.3 2.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MAF_flag10 PF01973.13 gi|298675784|ref|YP_003727534.1| - 9.9e-36 122.8 0.4 1.3e-35 122.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|298675784|ref|YP_003727534.1| - 0.00022 20.7 0.6 0.0009 18.8 0.2 2.1 2 0 0 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain DUF2100 PF09873.4 gi|298675784|ref|YP_003727534.1| - 0.0096 15.4 0.1 0.019 14.4 0.1 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2100) tRNA-synt_1 PF00133.17 gi|298675785|ref|YP_003727535.1| - 8.5e-205 681.2 7.3 1.4e-204 680.5 5.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|298675785|ref|YP_003727535.1| - 1.1e-36 125.9 1.3 2.3e-36 124.8 0.9 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|298675785|ref|YP_003727535.1| - 5.2e-26 91.2 9.6 1.4e-12 47.0 0.6 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|298675785|ref|YP_003727535.1| - 9.6e-05 21.6 0.2 0.0037 16.4 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|298675785|ref|YP_003727535.1| - 0.00066 18.4 0.0 0.0042 15.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) PUA PF01472.15 gi|298675786|ref|YP_003727536.1| - 3.3e-21 74.8 0.6 5e-21 74.2 0.4 1.3 1 0 0 1 1 1 1 PUA domain DUF552 PF04472.7 gi|298675787|ref|YP_003727537.1| - 2.8e-16 59.1 0.5 2.8e-16 59.1 0.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF552) zf-ZPR1 PF03367.8 gi|298675788|ref|YP_003727538.1| - 6.7e-42 142.3 0.1 8.4e-42 142.0 0.1 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain TraH PF06122.6 gi|298675788|ref|YP_003727538.1| - 0.019 13.8 0.1 0.024 13.4 0.0 1.1 1 0 0 1 1 1 0 Conjugative relaxosome accessory transposon protein DUF1652 PF07865.6 gi|298675788|ref|YP_003727538.1| - 0.027 14.0 0.0 0.075 12.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) HGTP_anticodon PF03129.15 gi|298675789|ref|YP_003727539.1| - 1.5e-20 72.8 0.1 3.5e-20 71.7 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|298675789|ref|YP_003727539.1| - 3.1e-20 72.4 0.1 1.2e-19 70.5 0.1 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|298675789|ref|YP_003727539.1| - 7.5e-15 54.6 0.0 1.6e-14 53.5 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal Prim_Zn_Ribbon PF08273.7 gi|298675789|ref|YP_003727539.1| - 0.042 13.9 0.2 0.097 12.7 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase ProRS-C_2 PF09181.5 gi|298675789|ref|YP_003727539.1| - 0.086 12.7 0.2 0.37 10.7 0.0 2.2 1 1 1 2 2 2 0 Prolyl-tRNA synthetase, C-terminal DBI_PRT PF02277.12 gi|298675790|ref|YP_003727540.1| - 1.9e-22 79.8 0.2 2.5e-22 79.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase DZR PF12773.2 gi|298675791|ref|YP_003727541.1| - 0.0046 16.7 3.4 0.0076 16.0 2.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|298675791|ref|YP_003727541.1| - 0.011 15.5 3.6 0.019 14.7 2.5 1.5 1 1 0 1 1 1 0 zinc-ribbons DUF2757 PF10955.3 gi|298675791|ref|YP_003727541.1| - 0.081 13.1 6.4 0.77 9.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) zf-ribbon_3 PF13248.1 gi|298675791|ref|YP_003727541.1| - 0.12 11.5 2.2 0.3 10.3 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|298675791|ref|YP_003727541.1| - 0.13 11.9 4.2 1.7 8.3 0.5 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF164 PF02591.10 gi|298675791|ref|YP_003727541.1| - 0.18 11.6 5.5 0.66 9.8 3.8 1.8 1 1 0 1 1 1 0 Putative zinc ribbon domain DUF2769 PF10967.3 gi|298675791|ref|YP_003727541.1| - 0.2 11.9 5.0 0.11 12.7 2.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2769) GATA PF00320.22 gi|298675791|ref|YP_003727541.1| - 0.2 11.0 3.0 7.2 6.0 0.1 2.1 2 0 0 2 2 2 0 GATA zinc finger NOB1_Zn_bind PF08772.6 gi|298675791|ref|YP_003727541.1| - 0.22 11.3 2.6 0.29 10.9 1.8 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-CHY PF05495.7 gi|298675791|ref|YP_003727541.1| - 0.22 11.6 4.3 0.25 11.5 3.0 1.1 1 0 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|298675791|ref|YP_003727541.1| - 0.25 11.3 4.3 3.8 7.5 0.5 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|298675791|ref|YP_003727541.1| - 0.25 11.0 4.5 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|298675791|ref|YP_003727541.1| - 0.3 10.6 2.5 1.5 8.3 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.6 gi|298675791|ref|YP_003727541.1| - 0.5 9.7 0.2 0.5 9.7 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-UBR PF02207.15 gi|298675791|ref|YP_003727541.1| - 0.82 9.4 5.3 0.28 10.9 0.4 1.9 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Prok-RING_1 PF14446.1 gi|298675791|ref|YP_003727541.1| - 1.1 9.0 4.6 2.3 8.0 3.2 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 FYVE PF01363.16 gi|298675791|ref|YP_003727541.1| - 1.6 8.6 6.0 3.5 7.5 4.2 1.6 1 1 0 1 1 1 0 FYVE zinc finger zf-B_box PF00643.19 gi|298675791|ref|YP_003727541.1| - 1.7 8.5 8.2 4 7.3 2.9 2.0 1 1 1 2 2 2 0 B-box zinc finger RRN7 PF11781.3 gi|298675791|ref|YP_003727541.1| - 3.2 7.3 7.5 8.2 6.0 0.5 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 GFA PF04828.9 gi|298675791|ref|YP_003727541.1| - 4 7.4 7.1 6.2 6.8 0.3 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Mu-like_Com PF10122.4 gi|298675792|ref|YP_003727542.1| - 0.0034 16.4 0.3 0.0077 15.2 0.0 1.7 1 1 1 2 2 2 1 Mu-like prophage protein Com Cys_rich_CPCC PF14206.1 gi|298675792|ref|YP_003727542.1| - 0.0067 15.9 0.7 0.0081 15.7 0.5 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC RPA_interact_C PF14768.1 gi|298675792|ref|YP_003727542.1| - 0.041 14.2 0.3 0.051 13.9 0.2 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn_Tnp_IS1595 PF12760.2 gi|298675792|ref|YP_003727542.1| - 0.072 12.9 1.3 0.1 12.3 0.9 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|298675792|ref|YP_003727542.1| - 0.073 12.8 0.3 0.096 12.4 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Cript PF10235.4 gi|298675792|ref|YP_003727542.1| - 0.077 13.3 0.2 0.084 13.2 0.1 1.1 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT PADR1 PF08063.7 gi|298675792|ref|YP_003727542.1| - 0.079 12.3 1.7 0.11 11.8 1.2 1.2 1 0 0 1 1 1 0 PADR1 (NUC008) domain DUF2318 PF10080.4 gi|298675792|ref|YP_003727542.1| - 0.098 12.4 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) TF_Zn_Ribbon PF08271.7 gi|298675792|ref|YP_003727542.1| - 0.18 11.1 3.3 0.29 10.4 2.3 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-Dof PF02701.10 gi|298675792|ref|YP_003727542.1| - 0.4 10.6 8.0 5.8 6.9 5.5 2.0 1 1 0 1 1 1 0 Dof domain, zinc finger zf-HIT PF04438.11 gi|298675792|ref|YP_003727542.1| - 1.3 8.7 5.1 12 5.6 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Mem_trans PF03547.13 gi|298675793|ref|YP_003727543.1| - 0.0063 14.8 2.8 0.0095 14.2 1.9 1.4 1 1 0 1 1 1 1 Membrane transport protein DUF1640 PF07798.6 gi|298675793|ref|YP_003727543.1| - 0.68 9.9 5.7 1.4 8.9 3.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) MtrC PF04211.8 gi|298675793|ref|YP_003727543.1| - 1.3 8.0 11.6 1.7 7.6 8.0 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C ABC2_membrane_5 PF13346.1 gi|298675793|ref|YP_003727543.1| - 1.5 8.0 18.3 0.077 12.2 7.9 1.9 1 1 0 2 2 2 0 ABC-2 family transporter protein Neur_chan_memb PF02932.11 gi|298675793|ref|YP_003727543.1| - 2.7 7.8 5.6 11 5.8 3.9 1.9 1 1 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region FA_desaturase PF00487.19 gi|298675793|ref|YP_003727543.1| - 2.7 7.3 11.2 2.4 7.5 3.7 2.1 1 1 1 2 2 2 0 Fatty acid desaturase Claudin_2 PF13903.1 gi|298675793|ref|YP_003727543.1| - 3.8 7.1 12.8 7.9 6.1 2.7 2.5 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF2583 PF10762.4 gi|298675793|ref|YP_003727543.1| - 8.2 6.6 8.6 1.4 9.0 2.8 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2583) MreB_Mbl PF06723.8 gi|298675794|ref|YP_003727544.1| - 3e-07 29.3 0.1 0.00034 19.3 0.0 2.4 3 0 0 3 3 3 2 MreB/Mbl protein AMMECR1 PF01871.12 gi|298675795|ref|YP_003727545.1| - 3.5e-59 198.7 0.0 4.1e-59 198.5 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 FumaraseC_C PF10415.4 gi|298675795|ref|YP_003727545.1| - 0.14 12.2 0.0 1.8 8.7 0.0 2.7 3 0 0 3 3 3 0 Fumarase C C-terminus PGK PF00162.14 gi|298675796|ref|YP_003727546.1| - 1.1e-117 392.9 0.9 1.2e-117 392.7 0.6 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DRTGG PF07085.7 gi|298675797|ref|YP_003727547.1| - 5.1e-34 116.0 0.2 1.3e-33 114.7 0.1 1.7 1 0 0 1 1 1 1 DRTGG domain AAA_26 PF13500.1 gi|298675797|ref|YP_003727547.1| - 1.2e-30 106.6 0.0 3e-30 105.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|298675797|ref|YP_003727547.1| - 9.3e-06 25.1 0.1 3.2e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.11 gi|298675797|ref|YP_003727547.1| - 8.5e-05 22.2 0.0 0.012 15.3 0.0 2.5 2 0 0 2 2 2 2 HPr Serine kinase N terminus MobB PF03205.9 gi|298675797|ref|YP_003727547.1| - 0.12 12.1 0.1 0.81 9.3 0.0 2.5 3 1 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-grasp_5 PF13549.1 gi|298675798|ref|YP_003727548.1| - 3e-80 268.5 0.1 5.1e-80 267.8 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|298675798|ref|YP_003727548.1| - 4.1e-55 185.1 2.0 2.1e-54 182.8 0.1 2.9 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|298675798|ref|YP_003727548.1| - 8.9e-26 90.3 0.5 6.7e-25 87.5 0.0 2.6 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|298675798|ref|YP_003727548.1| - 8.2e-16 58.3 1.0 2.4e-15 56.7 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|298675798|ref|YP_003727548.1| - 5.2e-05 23.0 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|298675798|ref|YP_003727548.1| - 0.04 13.3 0.5 0.14 11.5 0.3 2.0 1 1 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|298675798|ref|YP_003727548.1| - 0.051 12.8 0.1 0.1 11.8 0.1 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain GFO_IDH_MocA PF01408.17 gi|298675798|ref|YP_003727548.1| - 0.071 13.6 0.0 1.9 9.0 0.0 2.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold FMN_red PF03358.10 gi|298675799|ref|YP_003727549.1| - 3.4e-37 127.2 0.0 4.2e-37 126.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|298675799|ref|YP_003727549.1| - 2.6e-12 46.6 0.0 3.1e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|298675799|ref|YP_003727549.1| - 0.1 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain RecR PF02132.10 gi|298675799|ref|YP_003727549.1| - 0.25 10.8 1.4 0.55 9.7 0.9 1.5 1 0 0 1 1 1 0 RecR protein Voltage_CLC PF00654.15 gi|298675800|ref|YP_003727550.1| - 5e-87 292.1 31.9 5e-87 292.1 22.1 2.0 1 1 1 2 2 2 2 Voltage gated chloride channel CBS PF00571.23 gi|298675800|ref|YP_003727550.1| - 2.1e-22 78.6 1.8 4.2e-11 42.4 0.2 2.6 2 0 0 2 2 2 2 CBS domain GSDH PF07995.6 gi|298675801|ref|YP_003727551.1| - 8.3e-93 311.0 0.1 9.9e-93 310.8 0.1 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase SmpA_OmlA PF04355.8 gi|298675801|ref|YP_003727551.1| - 0.092 12.3 0.8 0.74 9.4 0.6 2.2 2 0 0 2 2 2 0 SmpA / OmlA family Resolvase PF00239.16 gi|298675803|ref|YP_003727553.1| - 1.2e-16 60.8 0.2 1.5e-16 60.5 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|298675803|ref|YP_003727553.1| - 0.0027 17.9 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|298675803|ref|YP_003727553.1| - 0.0051 16.5 0.2 0.009 15.7 0.1 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein Trp_syntA PF00290.15 gi|298675803|ref|YP_003727553.1| - 0.032 12.7 0.0 0.045 12.2 0.0 1.2 1 0 0 1 1 1 0 Tryptophan synthase alpha chain HTH_7 PF02796.10 gi|298675803|ref|YP_003727553.1| - 0.061 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Chordopox_A13L PF05961.6 gi|298675803|ref|YP_003727553.1| - 0.43 10.5 3.2 0.59 10.1 0.3 2.3 2 0 0 2 2 2 0 Chordopoxvirus A13L protein OrfB_IS605 PF01385.14 gi|298675804|ref|YP_003727554.1| - 1.2e-57 194.9 8.8 2.1e-57 194.1 6.1 1.4 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675804|ref|YP_003727554.1| - 2.9e-12 46.0 0.0 7e-12 44.8 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glyco_hydro_97 PF10566.4 gi|298675804|ref|YP_003727554.1| - 0.0023 17.0 0.4 0.0046 16.0 0.3 1.5 1 0 0 1 1 1 1 Glycoside hydrolase 97 Muted PF14942.1 gi|298675804|ref|YP_003727554.1| - 0.015 15.2 0.5 0.036 13.9 0.0 1.8 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Dynamin_N PF00350.18 gi|298675804|ref|YP_003727554.1| - 0.04 13.7 0.6 0.084 12.6 0.1 1.8 2 0 0 2 2 2 0 Dynamin family DUF479 PF04336.7 gi|298675804|ref|YP_003727554.1| - 0.097 12.7 1.5 0.37 10.9 0.2 2.6 2 2 1 3 3 3 0 Protein of unknown function, DUF479 Radical_SAM PF04055.16 gi|298675805|ref|YP_003727555.1| - 3e-23 82.8 0.1 2.8e-22 79.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|298675805|ref|YP_003727555.1| - 2.6e-21 75.2 0.2 5.7e-21 74.1 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|298675805|ref|YP_003727555.1| - 1.1e-05 25.0 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 TRAM domain B12-binding PF02310.14 gi|298675805|ref|YP_003727555.1| - 0.089 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain FBPase_glpX PF03320.8 gi|298675806|ref|YP_003727556.1| - 2.3e-113 377.9 6.7 2.7e-113 377.6 4.6 1.0 1 0 0 1 1 1 1 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Ribul_P_3_epim PF00834.14 gi|298675806|ref|YP_003727556.1| - 0.024 13.7 0.1 0.39 9.8 0.0 2.1 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family CGI-121 PF08617.5 gi|298675807|ref|YP_003727557.1| - 9.3e-24 83.9 0.1 1.1e-23 83.6 0.1 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PALP PF00291.20 gi|298675808|ref|YP_003727558.1| - 8.8e-72 241.9 0.5 1e-71 241.6 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme tRNA-synt_1 PF00133.17 gi|298675809|ref|YP_003727559.1| - 2.9e-64 217.1 5.6 1.8e-46 158.3 1.7 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|298675809|ref|YP_003727559.1| - 8.1e-28 97.1 2.6 3.3e-12 45.7 0.0 3.5 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|298675809|ref|YP_003727559.1| - 2.5e-23 82.5 1.0 4.9e-23 81.5 0.2 1.9 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|298675809|ref|YP_003727559.1| - 3e-10 39.7 0.1 7.7e-10 38.3 0.1 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|298675809|ref|YP_003727559.1| - 1.4e-09 37.5 0.1 1.5e-06 27.5 0.0 2.9 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|298675809|ref|YP_003727559.1| - 8.7e-05 21.4 0.3 0.00072 18.4 0.0 2.6 3 1 0 3 3 3 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|298675809|ref|YP_003727559.1| - 0.0018 17.0 0.5 0.0066 15.1 0.0 2.1 3 0 0 3 3 3 1 tRNA synthetases class I (K) HATPase_c PF02518.21 gi|298675810|ref|YP_003727560.1| - 2.1e-23 82.1 0.1 6.7e-23 80.5 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|298675810|ref|YP_003727560.1| - 1.5e-17 63.5 0.0 3.1e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 HAMP domain Cache_1 PF02743.13 gi|298675810|ref|YP_003727560.1| - 1.3e-09 37.4 0.5 4e-09 35.9 0.0 2.0 2 0 0 2 2 2 1 Cache domain HisKA PF00512.20 gi|298675810|ref|YP_003727560.1| - 9.5e-08 31.9 0.0 2.7e-07 30.4 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Cache_2 PF08269.6 gi|298675810|ref|YP_003727560.1| - 3.8e-06 26.7 2.0 6.3e-06 26.0 0.0 2.4 3 0 0 3 3 3 1 Cache domain Cache_3 PF14827.1 gi|298675810|ref|YP_003727560.1| - 0.0037 17.1 0.0 0.08 12.8 0.0 2.4 2 0 0 2 2 2 1 Sensory domain of two-component sensor kinase TarH PF02203.10 gi|298675810|ref|YP_003727560.1| - 0.01 15.6 1.6 0.019 14.7 0.0 2.2 2 1 0 2 2 2 0 Tar ligand binding domain homologue SPOB_a PF14689.1 gi|298675810|ref|YP_003727560.1| - 0.029 13.9 0.7 0.7 9.5 0.0 3.0 2 1 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.1 gi|298675810|ref|YP_003727560.1| - 0.03 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CN_hydrolase PF00795.17 gi|298675811|ref|YP_003727561.1| - 2.7e-26 92.0 0.0 3.3e-26 91.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase PvlArgDC PF01862.11 gi|298675813|ref|YP_003727563.1| - 2.9e-61 205.8 0.0 3.2e-61 205.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) ArsR PF09824.4 gi|298675814|ref|YP_003727564.1| - 3.2e-70 234.6 0.3 3.6e-70 234.4 0.2 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Glyco_hydro_26 PF02156.10 gi|298675814|ref|YP_003727564.1| - 0.0011 18.4 0.1 0.0014 18.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 26 Sec8_exocyst PF04048.9 gi|298675814|ref|YP_003727564.1| - 0.0019 17.8 0.6 0.005 16.4 0.1 1.7 2 0 0 2 2 2 1 Sec8 exocyst complex component specific domain DUF387 PF04079.11 gi|298675814|ref|YP_003727564.1| - 0.039 13.3 0.1 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) PHA_synth_III_E PF09712.5 gi|298675814|ref|YP_003727564.1| - 0.074 12.4 0.1 0.42 9.9 0.0 1.9 1 1 1 2 2 2 0 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) HTH_24 PF13412.1 gi|298675815|ref|YP_003727565.1| - 1.3e-09 37.2 0.0 5.8e-09 35.2 0.0 2.2 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|298675815|ref|YP_003727565.1| - 7.8e-09 35.0 0.0 2.3e-08 33.5 0.0 1.8 2 0 0 2 2 1 1 MarR family MarR PF01047.17 gi|298675815|ref|YP_003727565.1| - 1.3e-07 31.2 0.0 5.9e-07 29.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|298675815|ref|YP_003727565.1| - 8.2e-06 25.5 0.2 9.9e-05 22.0 0.0 2.6 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|298675815|ref|YP_003727565.1| - 2.7e-05 23.7 0.0 6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_3 PF01381.17 gi|298675815|ref|YP_003727565.1| - 0.00012 21.8 0.1 0.0023 17.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_27 PF13463.1 gi|298675815|ref|YP_003727565.1| - 0.00031 20.9 0.0 0.00062 20.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|298675815|ref|YP_003727565.1| - 0.0005 19.8 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|298675815|ref|YP_003727565.1| - 0.00063 19.8 0.0 0.0018 18.3 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator RPA_C PF08784.6 gi|298675815|ref|YP_003727565.1| - 0.0026 18.1 0.0 0.023 15.1 0.0 2.3 3 0 0 3 3 2 1 Replication protein A C terminal Fe_dep_repress PF01325.14 gi|298675815|ref|YP_003727565.1| - 0.0042 16.9 0.0 0.012 15.5 0.0 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|298675815|ref|YP_003727565.1| - 0.0055 16.2 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|298675815|ref|YP_003727565.1| - 0.0066 16.5 0.0 0.019 15.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|298675815|ref|YP_003727565.1| - 0.0075 15.8 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|298675815|ref|YP_003727565.1| - 0.0084 15.7 0.0 0.023 14.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|298675815|ref|YP_003727565.1| - 0.011 15.3 0.0 0.034 13.7 0.0 1.7 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|298675815|ref|YP_003727565.1| - 0.014 15.0 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Mnd1 PF03962.10 gi|298675815|ref|YP_003727565.1| - 0.037 13.6 0.0 0.091 12.4 0.0 1.7 1 0 0 1 1 1 0 Mnd1 family KorB PF08535.5 gi|298675815|ref|YP_003727565.1| - 0.041 14.0 0.0 0.15 12.2 0.0 2.0 1 0 0 1 1 1 0 KorB domain DUF977 PF06163.6 gi|298675815|ref|YP_003727565.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_20 PF12840.2 gi|298675815|ref|YP_003727565.1| - 0.064 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|298675815|ref|YP_003727565.1| - 0.1 12.1 0.0 0.27 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|298675815|ref|YP_003727565.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF4423 PF14394.1 gi|298675815|ref|YP_003727565.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_28 PF13518.1 gi|298675815|ref|YP_003727565.1| - 0.13 12.3 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Metallophos_2 PF12850.2 gi|298675816|ref|YP_003727566.1| - 1.7e-26 92.9 0.0 2e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|298675816|ref|YP_003727566.1| - 2.8e-07 30.1 0.7 0.00028 20.3 0.5 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Na_H_Exchanger PF00999.16 gi|298675820|ref|YP_003727570.1| - 5.2e-46 156.8 48.2 6.7e-46 156.5 33.4 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|298675820|ref|YP_003727570.1| - 1.5e-28 99.0 0.5 3.7e-28 97.8 0.3 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|298675820|ref|YP_003727570.1| - 5.3e-10 38.7 0.5 1e-09 37.8 0.4 1.5 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|298675820|ref|YP_003727570.1| - 9.2e-09 35.4 0.6 2.3e-08 34.2 0.4 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|298675820|ref|YP_003727570.1| - 1.5e-07 30.7 0.0 2.1e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_10 PF13460.1 gi|298675820|ref|YP_003727570.1| - 7.3e-06 26.1 0.1 1.2e-05 25.3 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|298675820|ref|YP_003727570.1| - 8.9e-06 25.2 0.1 1.6e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|298675820|ref|YP_003727570.1| - 9.6e-06 25.0 0.3 1.5e-05 24.4 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|298675820|ref|YP_003727570.1| - 1.4e-05 25.0 0.1 2.7e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|298675820|ref|YP_003727570.1| - 2.6e-05 23.4 0.2 4.7e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|298675820|ref|YP_003727570.1| - 3.5e-05 24.1 0.1 0.00013 22.3 0.1 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.1 gi|298675820|ref|YP_003727570.1| - 0.00014 22.1 0.0 0.00074 19.8 0.0 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|298675820|ref|YP_003727570.1| - 0.00067 19.7 0.7 0.0038 17.3 0.2 2.3 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|298675820|ref|YP_003727570.1| - 0.0011 18.2 0.0 0.0026 16.9 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|298675820|ref|YP_003727570.1| - 0.0017 18.1 0.0 0.0085 15.8 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|298675820|ref|YP_003727570.1| - 0.0042 17.4 0.5 0.0042 17.4 0.3 2.4 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.8 gi|298675820|ref|YP_003727570.1| - 0.0096 15.1 0.3 0.016 14.4 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family DAO PF01266.19 gi|298675820|ref|YP_003727570.1| - 0.014 14.2 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase ELFV_dehydrog PF00208.16 gi|298675820|ref|YP_003727570.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.13 gi|298675820|ref|YP_003727570.1| - 0.05 13.2 0.1 0.091 12.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|298675820|ref|YP_003727570.1| - 0.12 12.2 0.2 0.23 11.3 0.1 1.6 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|298675820|ref|YP_003727570.1| - 0.13 12.3 0.2 0.26 11.3 0.2 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|298675820|ref|YP_003727570.1| - 0.13 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Dimeth_Pyl PF09505.5 gi|298675821|ref|YP_003727571.1| - 8.2e-253 838.7 6.3 9.3e-253 838.5 4.4 1.0 1 0 0 1 1 1 1 Dimethylamine methyltransferase (Dimeth_PyL) Antimicrobial_7 PF08102.6 gi|298675821|ref|YP_003727571.1| - 0.037 14.0 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Scorpion antimicrobial peptide B12-binding PF02310.14 gi|298675822|ref|YP_003727572.1| - 8.4e-27 93.4 0.7 1.4e-26 92.7 0.5 1.3 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|298675822|ref|YP_003727572.1| - 4.7e-20 71.3 0.4 1.1e-19 70.2 0.3 1.6 1 0 0 1 1 1 1 B12 binding domain FGGY_C PF02782.11 gi|298675822|ref|YP_003727572.1| - 0.1 12.2 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Glyco_hydro_56 PF01630.13 gi|298675824|ref|YP_003727574.1| - 0.0091 14.6 0.0 0.011 14.4 0.0 1.1 1 0 0 1 1 1 1 Hyaluronidase DUF2963 PF11178.3 gi|298675824|ref|YP_003727574.1| - 0.047 13.1 0.1 0.084 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2963) EamA PF00892.15 gi|298675825|ref|YP_003727575.1| - 7.9e-11 42.0 44.2 7.2e-06 26.0 7.5 3.1 4 1 0 4 4 4 2 EamA-like transporter family EmrE PF13536.1 gi|298675825|ref|YP_003727575.1| - 9.5e-09 35.4 10.8 9.5e-09 35.4 7.5 3.3 3 0 0 3 3 3 1 Multidrug resistance efflux transporter FixP_N PF14715.1 gi|298675825|ref|YP_003727575.1| - 0.046 13.1 0.1 0.046 13.1 0.1 4.3 5 0 0 5 5 5 0 N-terminal domain of cytochrome oxidase-cbb3, FixP B12-binding PF02310.14 gi|298675826|ref|YP_003727576.1| - 7.6e-21 74.2 0.6 1.7e-20 73.0 0.4 1.6 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|298675826|ref|YP_003727576.1| - 1.4e-16 60.2 0.2 3.4e-16 59.0 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain SpoVAD PF07451.6 gi|298675826|ref|YP_003727576.1| - 0.012 14.0 0.1 0.016 13.6 0.1 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) YbjQ_1 PF01906.12 gi|298675826|ref|YP_003727576.1| - 0.048 14.0 2.4 0.079 13.3 0.2 2.3 2 1 0 2 2 2 0 Putative heavy-metal-binding MTTB PF06253.6 gi|298675827|ref|YP_003727577.1| - 7.8e-87 291.1 0.0 9.6e-87 290.8 0.0 1.0 1 0 0 1 1 1 1 Trimethylamine methyltransferase (MTTB) DUF4445 PF14574.1 gi|298675829|ref|YP_003727579.1| - 5.3e-111 370.7 1.8 7.2e-111 370.3 1.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4 PF00037.22 gi|298675829|ref|YP_003727579.1| - 1.3e-06 27.7 19.4 7.9e-05 22.0 2.6 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675829|ref|YP_003727579.1| - 1.4e-06 28.5 8.2 3.4e-06 27.3 5.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675829|ref|YP_003727579.1| - 2e-06 27.5 9.1 4.1e-06 26.5 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675829|ref|YP_003727579.1| - 2.7e-06 27.5 7.6 6.2e-06 26.3 5.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675829|ref|YP_003727579.1| - 3.1e-06 26.8 13.5 0.00051 19.8 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675829|ref|YP_003727579.1| - 5.1e-05 22.9 11.1 0.0008 19.1 8.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675829|ref|YP_003727579.1| - 0.00021 21.9 10.7 0.1 13.3 7.6 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|298675829|ref|YP_003727579.1| - 0.00071 19.5 8.1 0.02 14.8 0.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675829|ref|YP_003727579.1| - 0.0027 18.0 3.5 0.11 12.8 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675829|ref|YP_003727579.1| - 0.0034 17.2 11.4 0.34 10.9 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675829|ref|YP_003727579.1| - 0.0036 17.6 5.3 0.32 11.4 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain CH PF00307.26 gi|298675829|ref|YP_003727579.1| - 0.011 15.7 0.1 0.31 11.1 0.0 2.3 2 0 0 2 2 2 0 Calponin homology (CH) domain Fer4_3 PF12798.2 gi|298675829|ref|YP_003727579.1| - 0.011 16.2 15.1 0.27 11.8 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|298675829|ref|YP_003727579.1| - 0.083 12.7 3.3 0.14 12.0 2.3 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675829|ref|YP_003727579.1| - 0.11 12.9 14.1 0.29 11.5 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HCV_NS4a PF01006.15 gi|298675830|ref|YP_003727580.1| - 0.095 12.2 0.3 0.25 10.9 0.2 1.7 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Adenine_deam_C PF13382.1 gi|298675831|ref|YP_003727581.1| - 0.11 11.6 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain PaaX PF07848.7 gi|298675832|ref|YP_003727582.1| - 0.024 14.6 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein Mnd1 PF03962.10 gi|298675832|ref|YP_003727582.1| - 0.087 12.4 0.5 0.19 11.3 0.1 1.7 2 0 0 2 2 2 0 Mnd1 family tRNA_anti-codon PF01336.20 gi|298675833|ref|YP_003727583.1| - 3.1e-08 33.3 4.3 0.25 11.2 0.1 4.4 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain CBFD_NFYB_HMF PF00808.18 gi|298675834|ref|YP_003727584.1| - 2e-18 66.2 0.0 2.4e-18 65.9 0.0 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|298675834|ref|YP_003727584.1| - 1.9e-12 47.1 0.0 2.4e-12 46.8 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|298675834|ref|YP_003727584.1| - 2.5e-08 33.5 0.0 2.8e-08 33.3 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|298675834|ref|YP_003727584.1| - 5.2e-06 26.5 0.0 5.8e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S CENP-T PF15511.1 gi|298675834|ref|YP_003727584.1| - 4.5e-05 22.8 0.0 4.7e-05 22.8 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TAF PF02969.12 gi|298675834|ref|YP_003727584.1| - 0.00023 21.0 0.1 0.00027 20.8 0.1 1.0 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|298675834|ref|YP_003727584.1| - 0.00026 20.7 0.0 0.00028 20.6 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.8 gi|298675834|ref|YP_003727584.1| - 0.0038 17.4 0.0 0.0041 17.3 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-18kDa PF02269.11 gi|298675834|ref|YP_003727584.1| - 0.022 14.5 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.6 gi|298675834|ref|YP_003727584.1| - 0.052 13.4 0.1 0.055 13.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) MurB_C PF02873.11 gi|298675834|ref|YP_003727584.1| - 0.097 12.4 0.1 0.12 12.1 0.1 1.1 1 0 0 1 1 1 0 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PCP_red PF08369.5 gi|298675834|ref|YP_003727584.1| - 0.11 12.3 2.0 0.45 10.4 0.2 2.1 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Fer4 PF00037.22 gi|298675835|ref|YP_003727585.1| - 9.2e-14 50.3 12.5 7.2e-07 28.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675835|ref|YP_003727585.1| - 2.2e-12 47.1 29.5 1.4e-07 31.7 7.4 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675835|ref|YP_003727585.1| - 1.2e-11 44.1 22.2 1.4e-08 34.3 8.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675835|ref|YP_003727585.1| - 1.3e-11 44.3 5.3 1.8e-11 43.8 3.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675835|ref|YP_003727585.1| - 5.7e-11 42.5 17.4 2.3e-08 34.1 5.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675835|ref|YP_003727585.1| - 9.6e-11 41.3 7.1 6.5e-06 25.9 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675835|ref|YP_003727585.1| - 2.2e-10 39.9 10.0 6.6e-05 22.6 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|298675835|ref|YP_003727585.1| - 3.1e-10 39.3 12.4 4e-05 23.2 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298675835|ref|YP_003727585.1| - 5.5e-09 36.6 28.6 1.8e-05 25.3 7.5 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|298675835|ref|YP_003727585.1| - 3.2e-06 27.4 13.9 0.00099 19.4 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675835|ref|YP_003727585.1| - 3.4e-06 27.3 8.9 1.6e-05 25.1 6.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675835|ref|YP_003727585.1| - 5.6e-06 26.2 8.0 0.0023 18.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298675835|ref|YP_003727585.1| - 7.1e-06 26.5 8.8 0.01 16.4 0.5 2.3 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298675835|ref|YP_003727585.1| - 0.0002 21.6 14.6 0.046 14.1 2.4 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|298675835|ref|YP_003727585.1| - 0.0013 18.5 2.2 0.0021 17.8 1.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298675835|ref|YP_003727585.1| - 0.0023 18.3 18.3 0.014 15.9 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain DUF678 PF05077.7 gi|298675835|ref|YP_003727585.1| - 0.095 12.6 3.9 1.5 8.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) DUF3330 PF11809.3 gi|298675835|ref|YP_003727585.1| - 8.3 6.3 7.2 6.2 6.7 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3330) Sm_multidrug_ex PF06695.6 gi|298675836|ref|YP_003727586.1| - 9.2e-41 138.8 1.5 1.2e-40 138.4 1.1 1.1 1 0 0 1 1 1 1 Putative small multi-drug export protein Rep_fac_C PF08542.6 gi|298675837|ref|YP_003727587.1| - 4e-25 87.6 0.1 7.8e-25 86.6 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|298675837|ref|YP_003727587.1| - 2e-19 70.0 0.0 3.5e-18 66.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|298675837|ref|YP_003727587.1| - 3.2e-17 62.6 0.0 3.1e-15 56.2 0.0 2.6 2 1 0 2 2 2 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|298675837|ref|YP_003727587.1| - 1.7e-09 37.0 0.1 5.1e-08 32.2 0.0 2.8 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|298675837|ref|YP_003727587.1| - 4.7e-09 35.4 0.0 6.3e-06 25.1 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|298675837|ref|YP_003727587.1| - 1.4e-07 31.4 0.0 2.7e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675837|ref|YP_003727587.1| - 2.4e-07 30.9 0.0 0.016 15.3 0.0 2.8 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|298675837|ref|YP_003727587.1| - 3e-07 30.6 0.2 0.0001 22.3 0.0 3.0 1 1 1 3 3 3 1 AAA ATPase domain DNA_pol3_delta PF06144.8 gi|298675837|ref|YP_003727587.1| - 5.8e-06 25.9 0.0 8.5e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_3 PF07726.6 gi|298675837|ref|YP_003727587.1| - 7.1e-06 25.6 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|298675837|ref|YP_003727587.1| - 1.3e-05 24.0 0.1 0.00012 20.9 0.0 2.3 2 1 0 2 2 2 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|298675837|ref|YP_003727587.1| - 3.1e-05 23.2 0.0 0.0043 16.2 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|298675837|ref|YP_003727587.1| - 0.00011 22.3 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|298675837|ref|YP_003727587.1| - 0.00011 22.5 0.0 0.0022 18.2 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|298675837|ref|YP_003727587.1| - 0.00097 19.9 0.1 0.0038 18.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|298675837|ref|YP_003727587.1| - 0.0015 18.0 0.0 0.0038 16.6 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein ResIII PF04851.10 gi|298675837|ref|YP_003727587.1| - 0.0017 18.2 0.0 0.0041 16.9 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|298675837|ref|YP_003727587.1| - 0.0019 17.7 0.0 1.2 8.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|298675837|ref|YP_003727587.1| - 0.0023 17.6 0.0 0.0051 16.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_11 PF13086.1 gi|298675837|ref|YP_003727587.1| - 0.003 17.1 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|298675837|ref|YP_003727587.1| - 0.0056 16.4 0.0 0.042 13.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|298675837|ref|YP_003727587.1| - 0.0057 16.5 0.0 0.034 14.0 0.0 2.3 1 1 2 3 3 3 1 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|298675837|ref|YP_003727587.1| - 0.027 13.5 0.4 0.45 9.5 0.0 2.5 2 1 1 3 3 3 0 Zeta toxin PhoH PF02562.11 gi|298675837|ref|YP_003727587.1| - 0.047 12.9 0.0 2.9 7.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Arch_ATPase PF01637.13 gi|298675837|ref|YP_003727587.1| - 0.052 13.2 0.0 0.14 11.7 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase Viral_helicase1 PF01443.13 gi|298675837|ref|YP_003727587.1| - 0.064 12.7 0.0 0.53 9.7 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.17 gi|298675837|ref|YP_003727587.1| - 0.069 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.1 gi|298675837|ref|YP_003727587.1| - 0.081 12.3 0.0 0.23 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|298675837|ref|YP_003727587.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain SNF2_N PF00176.18 gi|298675837|ref|YP_003727587.1| - 0.12 11.1 0.0 1.2 7.8 0.0 2.0 1 1 1 2 2 2 0 SNF2 family N-terminal domain B12-binding_2 PF02607.12 gi|298675837|ref|YP_003727587.1| - 0.17 11.9 1.1 0.97 9.5 0.2 2.6 2 1 0 2 2 2 0 B12 binding domain Tic20 PF09685.5 gi|298675838|ref|YP_003727588.1| - 3.3e-12 46.3 6.7 4.3e-12 45.9 4.6 1.0 1 0 0 1 1 1 1 Tic20-like protein Claudin_2 PF13903.1 gi|298675838|ref|YP_003727588.1| - 0.15 11.7 2.6 0.29 10.8 1.8 1.5 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction TM_helix PF05552.7 gi|298675838|ref|YP_003727588.1| - 2.7 7.7 7.2 69 3.2 4.6 2.9 1 1 0 1 1 1 0 Conserved TM helix Fer4 PF00037.22 gi|298675839|ref|YP_003727589.1| - 9.5e-21 72.4 46.1 6e-08 31.9 3.0 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675839|ref|YP_003727589.1| - 2.6e-18 66.1 36.4 3.7e-09 36.8 8.2 4.4 3 3 1 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675839|ref|YP_003727589.1| - 1.3e-15 57.3 26.1 9.9e-10 38.5 8.4 4.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain FeS PF04060.8 gi|298675839|ref|YP_003727589.1| - 2.8e-13 49.2 1.7 2.8e-13 49.2 1.2 3.7 3 0 0 3 3 2 1 Putative Fe-S cluster Fer4_6 PF12837.2 gi|298675839|ref|YP_003727589.1| - 3.4e-13 48.8 45.6 5.7e-05 22.8 1.2 5.7 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675839|ref|YP_003727589.1| - 9.7e-12 44.5 48.0 2.3e-07 30.5 11.5 4.3 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675839|ref|YP_003727589.1| - 2.6e-11 44.0 37.7 0.00037 21.1 2.7 5.0 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|298675839|ref|YP_003727589.1| - 1.5e-10 40.3 48.3 1.9e-05 24.2 1.7 5.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298675839|ref|YP_003727589.1| - 2.4e-10 40.1 55.8 1.1e-05 25.2 10.2 4.4 2 1 3 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298675839|ref|YP_003727589.1| - 1.3e-06 28.2 68.9 0.00096 19.1 6.6 4.2 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675839|ref|YP_003727589.1| - 5.1e-05 23.2 48.4 0.0088 16.3 1.0 6.4 6 1 0 6 6 6 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298675839|ref|YP_003727589.1| - 0.00021 21.8 11.6 0.00056 20.4 1.6 5.9 5 2 1 6 6 6 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|298675839|ref|YP_003727589.1| - 0.00028 21.2 57.5 0.055 14.0 2.0 6.6 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|298675839|ref|YP_003727589.1| - 0.00049 20.3 44.4 0.0068 16.7 10.7 4.6 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298675839|ref|YP_003727589.1| - 0.0031 17.8 1.9 0.0031 17.8 1.3 5.7 4 2 2 6 6 6 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|298675839|ref|YP_003727589.1| - 0.087 13.2 1.2 0.087 13.2 0.9 4.8 4 2 1 5 5 4 0 4Fe-4S dicluster domain DUF3646 PF12362.3 gi|298675839|ref|YP_003727589.1| - 0.41 10.6 1.2 0.41 10.6 0.0 1.5 2 0 0 2 2 1 0 DNA polymerase III gamma and tau subunits C terminal Rnf-Nqr PF02508.9 gi|298675840|ref|YP_003727590.1| - 1.6e-62 210.5 16.7 1.9e-62 210.2 11.6 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein 7tm_7 PF08395.7 gi|298675840|ref|YP_003727590.1| - 0.18 10.8 11.0 0.58 9.1 7.6 1.9 1 1 0 1 1 1 0 7tm Chemosensory receptor DUF1761 PF08570.5 gi|298675840|ref|YP_003727590.1| - 5.5 7.0 15.0 2.6 8.0 3.8 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) Rnf-Nqr PF02508.9 gi|298675841|ref|YP_003727591.1| - 1.5e-55 187.7 14.4 1.6e-55 187.6 10.0 1.0 1 0 0 1 1 1 1 Rnf-Nqr subunit, membrane protein FMN_bind PF04205.9 gi|298675842|ref|YP_003727592.1| - 1.2e-18 67.0 0.9 1.6e-18 66.6 0.2 1.5 2 0 0 2 2 2 1 FMN-binding domain Arch_flagellin PF01917.11 gi|298675842|ref|YP_003727592.1| - 0.087 12.4 2.1 0.13 11.8 1.0 1.6 1 1 1 2 2 2 0 Archaebacterial flagellin UPF0259 PF06790.6 gi|298675842|ref|YP_003727592.1| - 0.13 11.7 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0259) NQR2_RnfD_RnfE PF03116.10 gi|298675843|ref|YP_003727593.1| - 8.2e-62 209.1 24.0 1.5e-34 119.6 5.7 2.1 1 1 1 2 2 2 2 NQR2, RnfD, RnfE family RnfC_N PF13375.1 gi|298675844|ref|YP_003727594.1| - 9.8e-24 83.0 0.7 9.8e-24 83.0 0.5 2.1 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain Complex1_51K PF01512.12 gi|298675844|ref|YP_003727594.1| - 7.7e-16 58.1 0.0 1.2e-15 57.4 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit Fer4_6 PF12837.2 gi|298675844|ref|YP_003727594.1| - 1.3e-08 34.3 12.1 0.00023 20.8 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675844|ref|YP_003727594.1| - 3.1e-08 33.2 11.3 6.2e-08 32.3 7.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675844|ref|YP_003727594.1| - 1.3e-07 31.3 12.6 0.0027 17.8 1.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298675844|ref|YP_003727594.1| - 1.8e-07 31.1 7.7 0.0053 16.7 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298675844|ref|YP_003727594.1| - 3e-07 30.7 11.4 9e-07 29.1 7.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675844|ref|YP_003727594.1| - 5.1e-06 26.6 13.2 9.2e-05 22.6 9.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675844|ref|YP_003727594.1| - 1.6e-05 24.3 15.6 0.0098 15.4 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298675844|ref|YP_003727594.1| - 2.9e-05 23.8 8.4 0.042 13.6 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675844|ref|YP_003727594.1| - 3.2e-05 24.1 14.0 4.3e-05 23.7 8.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain NQRA PF05896.6 gi|298675844|ref|YP_003727594.1| - 3.4e-05 23.1 0.0 4.7e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Fer4_2 PF12797.2 gi|298675844|ref|YP_003727594.1| - 0.0003 20.5 17.0 0.029 14.2 2.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675844|ref|YP_003727594.1| - 0.00037 20.8 11.7 0.083 13.3 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298675844|ref|YP_003727594.1| - 0.00087 19.6 16.9 0.15 12.7 2.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298675844|ref|YP_003727594.1| - 0.0013 19.4 12.8 0.15 12.8 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain SLBB PF10531.4 gi|298675844|ref|YP_003727594.1| - 0.0036 17.1 0.1 0.008 16.0 0.1 1.6 1 0 0 1 1 1 1 SLBB domain Fer4_15 PF13459.1 gi|298675844|ref|YP_003727594.1| - 0.021 15.3 4.9 1.7 9.2 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298675844|ref|YP_003727594.1| - 1.2 9.5 15.2 5.8 7.3 3.1 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Cytochrome_C7 PF14522.1 gi|298675845|ref|YP_003727595.1| - 1e-09 37.8 31.6 7.4e-05 22.2 0.8 5.3 4 1 1 5 5 5 4 Cytochrome c7 Cytochrome_C554 PF13435.1 gi|298675845|ref|YP_003727595.1| - 5e-05 23.3 29.9 0.048 13.7 0.1 5.1 3 2 1 4 4 4 2 Cytochrome c554 and c-prime EF-hand_5 PF13202.1 gi|298675845|ref|YP_003727595.1| - 0.014 14.7 0.0 0.028 13.7 0.0 1.5 1 0 0 1 1 1 0 EF hand Cytochrom_C PF00034.16 gi|298675845|ref|YP_003727595.1| - 0.65 10.8 14.5 14 6.5 0.0 5.4 5 1 0 5 5 5 0 Cytochrome c Cytochrom_NNT PF03264.9 gi|298675845|ref|YP_003727595.1| - 0.79 9.1 35.2 4.7 6.6 8.0 5.8 4 2 2 6 6 6 0 NapC/NirT cytochrome c family, N-terminal region Cytochrome_cB PF11783.3 gi|298675845|ref|YP_003727595.1| - 1.5 8.3 0.0 1.5 8.3 0.0 4.4 3 2 0 3 3 3 0 Cytochrome c bacterial ApbE PF02424.10 gi|298675847|ref|YP_003727597.1| - 1.8e-75 253.4 0.0 2.3e-75 253.1 0.0 1.1 1 0 0 1 1 1 1 ApbE family DUF1505 PF07403.6 gi|298675847|ref|YP_003727597.1| - 0.1 12.5 1.2 0.23 11.3 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1505) LigT_PEase PF02834.11 gi|298675848|ref|YP_003727598.1| - 5.4e-27 93.5 0.0 6.9e-17 61.2 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|298675848|ref|YP_003727598.1| - 1.3e-12 47.7 0.0 1.5e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|298675848|ref|YP_003727598.1| - 9.7e-08 31.9 0.1 1.2e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.7 gi|298675848|ref|YP_003727598.1| - 6.1e-05 22.4 0.1 7.3e-05 22.1 0.1 1.1 1 0 0 1 1 1 1 Coronavirus NS2A protein DisA_N PF02457.11 gi|298675849|ref|YP_003727599.1| - 4.5e-30 103.3 0.9 1.7e-29 101.4 0.1 2.0 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding FMN_red PF03358.10 gi|298675850|ref|YP_003727600.1| - 4e-12 45.8 0.0 6e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase eRF1_1 PF03463.10 gi|298675851|ref|YP_003727601.1| - 8.6e-29 99.7 1.1 1.9e-28 98.6 0.8 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|298675851|ref|YP_003727601.1| - 3.3e-25 88.5 0.5 7.8e-25 87.3 0.3 1.7 1 0 0 1 1 1 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|298675851|ref|YP_003727601.1| - 1.5e-18 67.4 0.1 2.8e-18 66.5 0.1 1.5 1 0 0 1 1 1 1 eRF1 domain 2 Radical_SAM PF04055.16 gi|298675851|ref|YP_003727601.1| - 0.13 12.3 0.3 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 Radical SAM superfamily FbpA PF05833.6 gi|298675852|ref|YP_003727602.1| - 6.6e-102 341.3 8.0 8.8e-102 340.9 5.5 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|298675852|ref|YP_003727602.1| - 5e-25 87.2 0.0 1.2e-24 86.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF814) DNA_primase_S PF01896.14 gi|298675853|ref|YP_003727603.1| - 2.3e-20 72.8 0.0 3.8e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit HHH_5 PF14520.1 gi|298675853|ref|YP_003727603.1| - 0.009 16.1 0.2 0.051 13.7 0.1 2.1 1 1 0 1 1 1 1 Helix-hairpin-helix domain Presenilin PF01080.12 gi|298675854|ref|YP_003727604.1| - 0.69 8.6 4.6 0.71 8.6 3.2 1.2 1 0 0 1 1 1 0 Presenilin Packaging_FI PF14000.1 gi|298675854|ref|YP_003727604.1| - 0.76 9.9 5.5 0.85 9.8 1.3 2.4 2 1 1 3 3 3 0 DNA packaging protein FI GAGA_bind PF06217.7 gi|298675854|ref|YP_003727604.1| - 1 9.2 5.3 1.2 9.0 3.7 1.2 1 0 0 1 1 1 0 GAGA binding protein-like family Zip PF02535.17 gi|298675854|ref|YP_003727604.1| - 1.6 7.6 3.0 2.1 7.2 2.1 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Ribosomal_L44 PF00935.14 gi|298675855|ref|YP_003727605.1| - 4.3e-27 93.9 10.6 4.3e-27 93.9 7.3 1.4 1 1 1 2 2 2 1 Ribosomal protein L44 Lar_restr_allev PF14354.1 gi|298675855|ref|YP_003727605.1| - 0.012 15.9 0.1 0.02 15.1 0.1 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Fer4_8 PF13183.1 gi|298675855|ref|YP_003727605.1| - 0.031 14.2 0.3 0.053 13.5 0.2 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Zn_Tnp_IS1595 PF12760.2 gi|298675855|ref|YP_003727605.1| - 0.12 12.1 1.9 8.4 6.2 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RNHCP PF12647.2 gi|298675855|ref|YP_003727605.1| - 0.13 12.1 4.8 1.5 8.7 0.8 2.1 1 1 0 2 2 2 0 RNHCP domain Zn-ribbon_8 PF09723.5 gi|298675855|ref|YP_003727605.1| - 0.2 11.6 3.5 4.4 7.3 0.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|298675855|ref|YP_003727605.1| - 1.3 9.0 7.8 3.6 7.7 0.3 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L33 PF00471.15 gi|298675855|ref|YP_003727605.1| - 2.8 8.2 11.3 0.87 9.8 3.2 2.6 2 0 0 2 2 2 0 Ribosomal protein L33 Ribosomal_S27e PF01667.12 gi|298675856|ref|YP_003727606.1| - 4.1e-25 87.0 0.7 4.5e-25 86.9 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|298675856|ref|YP_003727606.1| - 0.0022 17.4 0.2 0.0023 17.4 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|298675856|ref|YP_003727606.1| - 0.0055 16.0 1.5 0.0073 15.6 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding Stc1 PF12898.2 gi|298675856|ref|YP_003727606.1| - 0.018 15.0 0.5 0.021 14.8 0.3 1.2 1 0 0 1 1 1 0 Stc1 domain HypA PF01155.14 gi|298675856|ref|YP_003727606.1| - 0.021 14.5 0.4 0.023 14.3 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|298675856|ref|YP_003727606.1| - 0.057 13.5 0.4 0.078 13.1 0.3 1.2 1 0 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|298675856|ref|YP_003727606.1| - 0.059 13.3 1.5 0.095 12.6 1.0 1.2 1 0 0 1 1 1 0 Zinc ribbon domain FYVE PF01363.16 gi|298675856|ref|YP_003727606.1| - 0.065 13.1 0.3 0.07 13.0 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger Sgf11 PF08209.6 gi|298675856|ref|YP_003727606.1| - 0.066 12.5 2.7 0.29 10.4 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.17 gi|298675856|ref|YP_003727606.1| - 0.087 12.5 0.5 0.11 12.1 0.4 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-BED PF02892.10 gi|298675856|ref|YP_003727606.1| - 0.15 11.8 4.3 0.31 10.8 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger zinc_ribbon_6 PF14599.1 gi|298675856|ref|YP_003727606.1| - 0.2 11.4 3.4 1.3 8.8 2.1 2.3 1 1 1 2 2 2 0 Zinc-ribbon zf-C2H2_3 PF13878.1 gi|298675856|ref|YP_003727606.1| - 0.22 11.0 1.3 11 5.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-trcl PF13451.1 gi|298675856|ref|YP_003727606.1| - 0.64 9.6 4.3 2.9 7.5 0.4 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain EIF_2_alpha PF07541.7 gi|298675857|ref|YP_003727607.1| - 5e-27 93.8 0.3 8.1e-27 93.2 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|298675857|ref|YP_003727607.1| - 2.2e-14 53.3 0.4 3.3e-13 49.5 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain Dodecin PF07311.7 gi|298675857|ref|YP_003727607.1| - 0.44 10.6 3.1 1.6 8.8 0.0 3.0 4 0 0 4 4 4 0 Dodecin Nop10p PF04135.7 gi|298675858|ref|YP_003727608.1| - 2.3e-25 88.0 2.8 2.6e-25 87.8 1.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF1272 PF06906.6 gi|298675858|ref|YP_003727608.1| - 0.0003 20.5 1.4 0.00035 20.3 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) RecR PF02132.10 gi|298675858|ref|YP_003727608.1| - 0.0044 16.4 0.5 0.0061 15.9 0.3 1.2 1 0 0 1 1 1 1 RecR protein PolC_DP2 PF03833.8 gi|298675858|ref|YP_003727608.1| - 0.028 12.0 0.5 0.026 12.2 0.3 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NOB1_Zn_bind PF08772.6 gi|298675858|ref|YP_003727608.1| - 0.074 12.8 0.2 0.092 12.5 0.1 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|298675858|ref|YP_003727608.1| - 0.24 10.6 4.8 1.1 8.5 3.1 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|298675858|ref|YP_003727608.1| - 0.33 10.7 3.6 0.62 9.9 2.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|298675858|ref|YP_003727608.1| - 1.1 8.6 4.4 2 7.8 0.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|298675858|ref|YP_003727608.1| - 9.7 6.3 7.2 0.61 10.1 0.5 2.2 2 1 1 3 3 3 0 Zinc-binding domain of primase-helicase PAC2 PF09754.4 gi|298675859|ref|YP_003727609.1| - 1.9e-51 175.0 0.0 2.3e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Glycos_transf_1 PF00534.15 gi|298675859|ref|YP_003727609.1| - 0.036 13.4 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Baculo_ODV-E27 PF05314.6 gi|298675859|ref|YP_003727609.1| - 0.1 11.6 1.4 0.14 11.2 1.0 1.2 1 0 0 1 1 1 0 Baculovirus occlusion-derived virus envelope protein EC27 PHP PF02811.14 gi|298675860|ref|YP_003727610.1| - 0.0011 18.8 0.2 0.0017 18.1 0.1 1.4 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|298675860|ref|YP_003727610.1| - 0.0014 18.1 0.0 0.0034 16.8 0.0 1.6 1 0 0 1 1 1 1 PHP-associated Nol1_Nop2_Fmu PF01189.12 gi|298675861|ref|YP_003727611.1| - 3.8e-49 167.5 0.0 4.9e-49 167.2 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|298675861|ref|YP_003727611.1| - 2e-10 40.4 0.1 3.9e-10 39.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298675861|ref|YP_003727611.1| - 1.7e-08 34.5 0.0 3.3e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298675861|ref|YP_003727611.1| - 4.5e-05 24.0 0.0 0.00023 21.7 0.0 2.1 3 0 0 3 3 3 1 Methyltransferase domain FtsJ PF01728.14 gi|298675861|ref|YP_003727611.1| - 8.7e-05 22.5 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.13 gi|298675861|ref|YP_003727611.1| - 0.0001 21.4 0.0 0.0048 16.0 0.0 2.2 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|298675861|ref|YP_003727611.1| - 0.00051 19.6 0.0 0.0012 18.4 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|298675861|ref|YP_003727611.1| - 0.0043 16.4 0.0 0.0068 15.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|298675861|ref|YP_003727611.1| - 0.033 13.7 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_4 PF02390.12 gi|298675861|ref|YP_003727611.1| - 0.063 12.3 0.0 0.1 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Nol1_Nop2_Fmu_2 PF13636.1 gi|298675862|ref|YP_003727612.1| - 7.5e-10 38.7 0.1 9.6e-10 38.4 0.1 1.2 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis DUF1639 PF07797.9 gi|298675862|ref|YP_003727612.1| - 0.055 12.8 0.5 0.12 11.8 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1639) DUF3816 PF12822.2 gi|298675863|ref|YP_003727613.1| - 0.015 15.2 2.5 0.022 14.6 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) LGT PF01790.13 gi|298675863|ref|YP_003727613.1| - 0.017 14.0 1.2 0.022 13.6 0.8 1.1 1 0 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase DUF4131 PF13567.1 gi|298675863|ref|YP_003727613.1| - 0.073 12.4 0.1 0.073 12.4 0.0 1.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) COX15-CtaA PF02628.10 gi|298675863|ref|YP_003727613.1| - 0.086 11.6 3.5 0.12 11.1 2.4 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein EamA PF00892.15 gi|298675863|ref|YP_003727613.1| - 0.11 12.4 5.9 0.17 11.9 4.1 1.2 1 0 0 1 1 1 0 EamA-like transporter family IBV_3A PF03617.8 gi|298675863|ref|YP_003727613.1| - 0.3 10.8 2.7 0.62 9.8 1.9 1.4 1 0 0 1 1 1 0 IBV 3A protein Wzy_C PF04932.10 gi|298675863|ref|YP_003727613.1| - 6 6.6 7.6 29 4.3 5.2 2.0 1 1 0 1 1 1 0 O-Antigen ligase MacB_PCD PF12704.2 gi|298675864|ref|YP_003727614.1| - 4.5e-38 131.1 1.4 4.5e-38 131.1 0.9 2.3 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|298675864|ref|YP_003727614.1| - 1.5e-22 79.5 16.4 9.4e-22 77.0 6.9 2.2 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|298675865|ref|YP_003727615.1| - 7.8e-41 140.1 5.0 7.8e-41 140.1 3.5 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|298675865|ref|YP_003727615.1| - 3.7e-20 71.8 16.4 2.1e-19 69.4 8.4 2.2 2 0 0 2 2 2 2 FtsX-like permease family DUF525 PF04379.9 gi|298675865|ref|YP_003727615.1| - 0.017 15.0 0.2 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF525) CARDB PF07705.6 gi|298675866|ref|YP_003727616.1| - 0.0013 18.7 1.2 2.5 8.1 0.1 3.7 2 2 2 4 4 4 2 CARDB DUF11 PF01345.13 gi|298675866|ref|YP_003727616.1| - 0.0043 17.0 0.0 0.79 9.8 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|298675866|ref|YP_003727616.1| - 0.03 13.8 0.1 0.14 11.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) ETRAMP PF09716.5 gi|298675866|ref|YP_003727616.1| - 0.12 12.3 0.2 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) ABC_tran PF00005.22 gi|298675867|ref|YP_003727617.1| - 9.3e-34 116.6 0.0 1.3e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675867|ref|YP_003727617.1| - 1.7e-12 47.9 0.0 7.6e-10 39.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|298675867|ref|YP_003727617.1| - 2.3e-07 30.2 0.3 1.3e-06 27.8 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|298675867|ref|YP_003727617.1| - 8.8e-05 21.9 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|298675867|ref|YP_003727617.1| - 0.0003 20.0 0.0 0.00061 19.0 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|298675867|ref|YP_003727617.1| - 0.0021 17.5 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_23 PF13476.1 gi|298675867|ref|YP_003727617.1| - 0.0029 17.9 0.1 0.0054 17.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298675867|ref|YP_003727617.1| - 0.0032 17.7 0.1 0.037 14.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298675867|ref|YP_003727617.1| - 0.0033 17.5 0.1 0.026 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298675867|ref|YP_003727617.1| - 0.0041 17.1 0.0 0.0047 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|298675867|ref|YP_003727617.1| - 0.0051 17.6 0.1 0.012 16.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|298675867|ref|YP_003727617.1| - 0.013 15.4 0.2 0.082 12.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|298675867|ref|YP_003727617.1| - 0.014 14.4 0.0 0.28 10.1 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|298675867|ref|YP_003727617.1| - 0.016 14.5 0.0 0.036 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|298675867|ref|YP_003727617.1| - 0.018 14.4 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|298675867|ref|YP_003727617.1| - 0.025 14.2 0.0 0.17 11.5 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|298675867|ref|YP_003727617.1| - 0.027 14.3 0.0 0.2 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|298675867|ref|YP_003727617.1| - 0.029 13.2 0.1 0.069 11.9 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain T2SE PF00437.15 gi|298675867|ref|YP_003727617.1| - 0.032 13.1 0.0 0.054 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein T4SS-DNA_transf PF02534.9 gi|298675867|ref|YP_003727617.1| - 0.035 12.6 0.0 0.52 8.8 0.0 2.0 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer MMR_HSR1 PF01926.18 gi|298675867|ref|YP_003727617.1| - 0.037 13.9 0.0 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA12 PF10443.4 gi|298675867|ref|YP_003727617.1| - 0.048 12.1 0.0 0.093 11.2 0.0 1.3 1 1 0 1 1 1 0 RNA12 protein MobB PF03205.9 gi|298675867|ref|YP_003727617.1| - 0.067 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|298675867|ref|YP_003727617.1| - 0.077 12.8 0.2 0.65 9.9 0.0 2.3 3 0 0 3 3 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|298675867|ref|YP_003727617.1| - 0.093 11.3 0.0 0.17 10.5 0.0 1.4 2 0 0 2 2 2 0 Adenovirus IVa2 protein DUF87 PF01935.12 gi|298675867|ref|YP_003727617.1| - 0.12 12.2 0.2 0.33 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|298675867|ref|YP_003727617.1| - 0.12 11.8 0.0 0.43 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|298675867|ref|YP_003727617.1| - 0.13 12.4 0.1 0.54 10.4 0.0 2.0 2 0 0 2 2 1 0 RNA helicase MarR PF01047.17 gi|298675868|ref|YP_003727618.1| - 0.00038 20.0 0.0 0.00078 19.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|298675868|ref|YP_003727618.1| - 0.00082 18.9 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|298675868|ref|YP_003727618.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|298675868|ref|YP_003727618.1| - 0.0084 15.7 0.0 0.023 14.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain YbbR PF07949.7 gi|298675868|ref|YP_003727618.1| - 0.011 15.8 1.2 0.023 14.8 0.2 2.0 2 1 0 2 2 2 0 YbbR-like protein FUR PF01475.14 gi|298675868|ref|YP_003727618.1| - 0.021 14.7 0.3 0.12 12.3 0.0 1.9 1 1 1 2 2 2 0 Ferric uptake regulator family HTH_CodY PF08222.6 gi|298675868|ref|YP_003727618.1| - 0.028 13.7 0.1 0.056 12.7 0.1 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|298675868|ref|YP_003727618.1| - 0.04 14.2 0.0 0.086 13.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|298675868|ref|YP_003727618.1| - 0.054 12.8 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding AAA_23 PF13476.1 gi|298675868|ref|YP_003727618.1| - 0.076 13.3 3.3 0.084 13.1 2.3 1.1 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.12 gi|298675869|ref|YP_003727619.1| - 2.7e-55 187.3 0.1 3.7e-55 186.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|298675870|ref|YP_003727620.1| - 1.3e-20 74.0 0.0 2.1e-20 73.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675870|ref|YP_003727620.1| - 3.8e-12 46.7 0.7 1.4e-06 28.5 0.2 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|298675870|ref|YP_003727620.1| - 3.3e-06 26.4 0.8 0.00024 20.4 0.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|298675870|ref|YP_003727620.1| - 3.2e-05 24.3 0.2 5.1e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|298675870|ref|YP_003727620.1| - 0.00077 18.6 0.0 0.0033 16.5 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|298675870|ref|YP_003727620.1| - 0.00099 18.5 0.2 0.0024 17.3 0.0 1.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|298675870|ref|YP_003727620.1| - 0.0024 16.4 0.2 0.0037 15.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|298675870|ref|YP_003727620.1| - 0.0045 16.7 0.0 0.0092 15.6 0.0 1.5 2 0 0 2 2 2 1 Archaeal ATPase DUF258 PF03193.11 gi|298675870|ref|YP_003727620.1| - 0.016 14.3 0.1 0.29 10.2 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|298675870|ref|YP_003727620.1| - 0.02 15.3 0.0 1.7 9.1 0.0 2.7 3 0 0 3 3 3 0 Miro-like protein AAA PF00004.24 gi|298675870|ref|YP_003727620.1| - 0.025 14.7 0.3 0.28 11.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Adeno_IVa2 PF02456.10 gi|298675870|ref|YP_003727620.1| - 0.027 13.1 0.0 0.04 12.5 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein MutS_V PF00488.16 gi|298675870|ref|YP_003727620.1| - 0.049 13.0 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 MutS domain V AAA_10 PF12846.2 gi|298675870|ref|YP_003727620.1| - 0.1 11.9 0.1 0.23 10.8 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|298675870|ref|YP_003727620.1| - 0.14 12.0 0.0 0.73 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF2769 PF10967.3 gi|298675871|ref|YP_003727621.1| - 6.5e-15 55.1 13.7 1.8e-14 53.7 8.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2769) Hydantoinase_A PF01968.13 gi|298675872|ref|YP_003727622.1| - 1.2e-73 247.7 0.0 5.6e-73 245.5 0.0 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|298675872|ref|YP_003727622.1| - 9.3e-44 149.0 0.1 6e-40 136.6 0.0 2.7 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|298675872|ref|YP_003727622.1| - 7.6e-09 34.3 0.5 0.00062 18.2 0.1 2.2 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|298675872|ref|YP_003727622.1| - 0.0021 17.3 0.0 0.05 12.9 0.0 2.4 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.1 gi|298675872|ref|YP_003727622.1| - 0.08 12.7 1.1 2.2 8.1 0.1 2.4 2 0 0 2 2 2 0 Cell division protein FtsA Zn-ribbon_8 PF09723.5 gi|298675873|ref|YP_003727623.1| - 0.0014 18.5 1.9 0.0018 18.1 1.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Zn_ribbon_2 PF12674.2 gi|298675873|ref|YP_003727623.1| - 0.025 14.9 3.1 0.31 11.4 0.4 2.0 1 1 1 2 2 2 0 Putative zinc ribbon domain zf-ribbon_3 PF13248.1 gi|298675873|ref|YP_003727623.1| - 0.049 12.8 3.5 0.41 9.9 2.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|298675873|ref|YP_003727623.1| - 0.13 12.0 4.6 0.2 11.4 3.2 1.3 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|298675873|ref|YP_003727623.1| - 0.14 11.4 0.2 0.14 11.4 0.1 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Cas_CXXC_CXXC PF09706.5 gi|298675873|ref|YP_003727623.1| - 0.18 12.0 4.4 3.4 7.9 0.9 2.1 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) C1_3 PF07649.7 gi|298675873|ref|YP_003727623.1| - 0.19 11.8 4.7 2.8 8.0 0.9 2.2 2 0 0 2 2 2 0 C1-like domain DZR PF12773.2 gi|298675873|ref|YP_003727623.1| - 0.25 11.1 2.9 7.2 6.5 2.4 2.0 1 1 1 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|298675873|ref|YP_003727623.1| - 0.32 10.4 4.9 4.6 6.8 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|298675873|ref|YP_003727623.1| - 0.37 10.5 4.4 2.5 7.8 0.4 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-P11 PF03854.9 gi|298675873|ref|YP_003727623.1| - 0.38 10.2 3.2 2.5 7.6 2.2 1.9 1 1 0 1 1 1 0 P-11 zinc finger Desulfoferrod_N PF06397.7 gi|298675873|ref|YP_003727623.1| - 0.45 9.9 4.2 5.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-dskA_traR PF01258.12 gi|298675873|ref|YP_003727623.1| - 1 9.1 6.0 0.98 9.2 1.0 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger XPA_N PF01286.13 gi|298675873|ref|YP_003727623.1| - 2.9 7.6 5.9 9.6 5.9 0.9 2.1 2 0 0 2 2 2 0 XPA protein N-terminal AAA_18 PF13238.1 gi|298675875|ref|YP_003727625.1| - 9.2e-25 87.4 1.5 9.2e-25 87.4 1.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|298675875|ref|YP_003727625.1| - 6e-16 59.3 0.1 9e-16 58.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|298675875|ref|YP_003727625.1| - 6.5e-06 26.0 0.0 0.0083 16.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|298675875|ref|YP_003727625.1| - 0.00023 21.1 0.0 0.00053 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|298675875|ref|YP_003727625.1| - 0.00039 19.8 0.1 0.014 14.8 0.0 2.4 1 1 0 2 2 2 1 Dephospho-CoA kinase SKI PF01202.17 gi|298675875|ref|YP_003727625.1| - 0.00077 19.3 0.3 0.0036 17.1 0.2 2.1 1 1 0 1 1 1 1 Shikimate kinase APS_kinase PF01583.15 gi|298675875|ref|YP_003727625.1| - 0.0031 17.1 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA PF00004.24 gi|298675875|ref|YP_003727625.1| - 0.0049 17.0 0.5 0.016 15.3 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298675875|ref|YP_003727625.1| - 0.0091 16.1 0.0 0.014 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|298675875|ref|YP_003727625.1| - 0.011 14.4 0.4 0.059 12.1 0.1 2.0 2 0 0 2 2 2 0 ArgK protein KAP_NTPase PF07693.9 gi|298675875|ref|YP_003727625.1| - 0.014 14.4 0.0 0.026 13.5 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain Zeta_toxin PF06414.7 gi|298675875|ref|YP_003727625.1| - 0.015 14.4 0.0 0.024 13.7 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin KTI12 PF08433.5 gi|298675875|ref|YP_003727625.1| - 0.015 14.4 0.4 0.05 12.8 0.0 2.0 1 1 0 2 2 2 0 Chromatin associated protein KTI12 Seryl_tRNA_N PF02403.17 gi|298675875|ref|YP_003727625.1| - 0.037 14.0 3.0 4 7.4 0.1 2.7 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain KaiC PF06745.8 gi|298675875|ref|YP_003727625.1| - 0.041 13.0 4.0 0.62 9.1 0.1 2.6 1 1 1 3 3 3 0 KaiC RNA_helicase PF00910.17 gi|298675875|ref|YP_003727625.1| - 0.048 13.8 0.1 0.089 12.9 0.0 1.7 1 1 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.18 gi|298675875|ref|YP_003727625.1| - 0.055 13.4 0.9 0.12 12.3 0.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase ADK PF00406.17 gi|298675875|ref|YP_003727625.1| - 0.055 13.3 0.2 5.5 6.8 0.0 2.7 1 1 1 2 2 2 0 Adenylate kinase DUF258 PF03193.11 gi|298675875|ref|YP_003727625.1| - 0.085 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 CPT PF07931.7 gi|298675875|ref|YP_003727625.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein ABC_tran PF00005.22 gi|298675875|ref|YP_003727625.1| - 0.22 11.7 2.8 0.32 11.2 1.6 1.5 1 1 0 1 1 1 0 ABC transporter GATase PF00117.23 gi|298675876|ref|YP_003727626.1| - 3.2e-46 157.2 0.0 3.5e-46 157.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|298675876|ref|YP_003727626.1| - 1.8e-17 63.5 0.0 2.8e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 DUF2124 PF09897.4 gi|298675876|ref|YP_003727626.1| - 0.049 13.3 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2124) Chorismate_bind PF00425.13 gi|298675877|ref|YP_003727627.1| - 2.2e-93 312.2 0.0 1.2e-90 303.3 0.0 3.0 3 0 0 3 3 3 2 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|298675877|ref|YP_003727627.1| - 4.3e-28 98.0 0.5 7.7e-27 94.0 0.0 2.8 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|298675878|ref|YP_003727628.1| - 5e-33 114.3 0.5 7.3e-33 113.7 0.3 1.2 1 1 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|298675878|ref|YP_003727628.1| - 0.00025 20.2 0.1 0.0006 18.9 0.0 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|298675878|ref|YP_003727628.1| - 0.00064 19.0 0.1 0.0013 18.0 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein BtpA PF03437.10 gi|298675878|ref|YP_003727628.1| - 0.01 15.0 0.3 0.024 13.9 0.2 1.6 1 1 0 1 1 1 0 BtpA family Glycos_transf_3 PF00591.16 gi|298675879|ref|YP_003727629.1| - 4.1e-99 331.0 1.0 5.4e-99 330.6 0.7 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|298675879|ref|YP_003727629.1| - 1.2e-18 66.4 2.2 2.7e-18 65.3 0.5 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Fer4_13 PF13370.1 gi|298675880|ref|YP_003727630.1| - 2.4e-18 66.2 3.3 2.8e-18 66.0 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|298675880|ref|YP_003727630.1| - 6e-11 42.7 1.0 7.4e-11 42.4 0.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|298675880|ref|YP_003727630.1| - 2.5e-05 24.4 4.0 3.6e-05 23.9 2.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675880|ref|YP_003727630.1| - 0.0012 18.6 4.5 0.041 13.7 0.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298675880|ref|YP_003727630.1| - 0.0028 17.1 5.7 0.13 11.8 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675880|ref|YP_003727630.1| - 0.023 14.4 3.9 0.065 13.0 2.8 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|298675880|ref|YP_003727630.1| - 0.024 14.4 1.5 0.028 14.2 1.1 1.3 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_7 PF12838.2 gi|298675880|ref|YP_003727630.1| - 0.026 14.8 4.9 0.42 11.0 0.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675880|ref|YP_003727630.1| - 0.13 12.2 0.6 0.13 12.2 0.4 2.3 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|298675880|ref|YP_003727630.1| - 4.9 7.2 8.5 7.3 6.6 0.8 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298675880|ref|YP_003727630.1| - 6.3 7.3 7.8 3.1 8.3 1.1 2.4 2 1 0 2 2 2 0 4Fe-4S binding domain AIRS PF00586.19 gi|298675881|ref|YP_003727631.1| - 4.1e-21 75.0 0.4 9.8e-21 73.8 0.3 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|298675881|ref|YP_003727631.1| - 3.1e-12 46.7 0.0 5.4e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain S-layer PF07752.6 gi|298675882|ref|YP_003727632.1| - 1.3e-151 503.0 41.0 1.2e-78 263.9 12.7 2.7 2 0 0 2 2 2 2 S-layer protein PEGA PF08308.6 gi|298675882|ref|YP_003727632.1| - 7.1e-10 38.5 5.4 0.00065 19.4 0.0 3.6 3 0 0 3 3 3 2 PEGA domain fn3 PF00041.16 gi|298675882|ref|YP_003727632.1| - 3.8e-08 33.3 4.7 0.00066 19.7 0.3 3.3 2 0 0 2 2 2 2 Fibronectin type III domain CarboxypepD_reg PF13620.1 gi|298675882|ref|YP_003727632.1| - 6.3e-08 32.5 9.3 0.00091 19.2 0.2 4.2 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain DUF2606 PF10794.4 gi|298675882|ref|YP_003727632.1| - 0.00014 21.3 2.8 0.054 12.9 0.5 3.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2606) DUF4480 PF13715.1 gi|298675882|ref|YP_003727632.1| - 0.00028 20.8 0.7 0.00028 20.8 0.5 5.9 4 2 3 7 7 7 2 Domain of unknown function (DUF4480) BiPBP_C PF06832.7 gi|298675882|ref|YP_003727632.1| - 0.0033 17.2 0.0 4.7 7.1 0.0 3.0 2 0 0 2 2 2 2 Penicillin-Binding Protein C-terminus Family PapC_N PF13954.1 gi|298675882|ref|YP_003727632.1| - 0.0037 16.8 4.5 0.004 16.7 0.2 3.0 2 0 0 2 2 2 1 PapC N-terminal domain DUF4198 PF10670.4 gi|298675882|ref|YP_003727632.1| - 0.014 15.4 10.2 0.029 14.3 0.1 4.0 4 2 1 5 5 5 0 Domain of unknown function (DUF4198) A2M_N_2 PF07703.9 gi|298675882|ref|YP_003727632.1| - 0.057 13.2 0.4 2.2 8.0 0.1 2.8 2 0 0 2 2 2 0 Alpha-2-macroglobulin family N-terminal region SecD-TM1 PF13721.1 gi|298675882|ref|YP_003727632.1| - 0.08 13.2 0.4 2.1 8.6 0.0 3.1 3 0 0 3 3 3 0 SecD export protein N-terminal TM region HTH_3 PF01381.17 gi|298675883|ref|YP_003727633.1| - 9.6e-09 34.9 0.0 2.5e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|298675883|ref|YP_003727633.1| - 2.1e-07 30.8 0.2 9.6e-07 28.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|298675883|ref|YP_003727633.1| - 0.0026 17.9 0.0 0.0058 16.8 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.1 gi|298675883|ref|YP_003727633.1| - 0.0045 17.1 0.0 0.0077 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.18 gi|298675883|ref|YP_003727633.1| - 0.054 13.0 0.0 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 MerR family regulatory protein Dodecin PF07311.7 gi|298675883|ref|YP_003727633.1| - 0.52 10.3 3.7 1.8 8.6 0.3 3.0 3 0 0 3 3 3 0 Dodecin NMT1_2 PF13379.1 gi|298675884|ref|YP_003727634.1| - 1.1e-45 156.0 0.0 1.4e-45 155.7 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|298675884|ref|YP_003727634.1| - 1.5e-16 60.6 0.0 2.1e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|298675884|ref|YP_003727634.1| - 3.2e-07 29.9 0.0 4.6e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein VitK2_biosynth PF02621.9 gi|298675884|ref|YP_003727634.1| - 0.025 13.7 0.0 0.038 13.1 0.0 1.2 1 0 0 1 1 1 0 Menaquinone biosynthesis LysR_substrate PF03466.15 gi|298675884|ref|YP_003727634.1| - 0.032 13.3 0.0 0.053 12.6 0.0 1.3 1 0 0 1 1 1 0 LysR substrate binding domain CBF PF03914.12 gi|298675884|ref|YP_003727634.1| - 0.099 12.0 0.1 4.4 6.7 0.1 2.1 2 0 0 2 2 2 0 CBF/Mak21 family BPD_transp_1 PF00528.17 gi|298675885|ref|YP_003727635.1| - 9.5e-22 77.4 8.3 9.5e-22 77.4 5.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|298675886|ref|YP_003727636.1| - 8.1e-34 116.8 0.0 1.3e-33 116.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675886|ref|YP_003727636.1| - 5.1e-11 43.0 0.0 7e-05 22.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|298675886|ref|YP_003727636.1| - 4.4e-08 32.5 0.1 0.0062 15.6 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|298675886|ref|YP_003727636.1| - 3.6e-06 27.1 0.3 3.9e-05 23.8 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|298675886|ref|YP_003727636.1| - 7.6e-06 26.1 0.0 2.1e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|298675886|ref|YP_003727636.1| - 5.7e-05 23.1 0.0 9.3e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|298675886|ref|YP_003727636.1| - 6.6e-05 22.1 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|298675886|ref|YP_003727636.1| - 0.00014 22.2 0.1 0.00032 21.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|298675886|ref|YP_003727636.1| - 0.00016 22.5 0.1 0.00098 19.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|298675886|ref|YP_003727636.1| - 0.00038 19.2 0.0 0.00054 18.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein Arch_ATPase PF01637.13 gi|298675886|ref|YP_003727636.1| - 0.00057 19.6 0.1 0.0012 18.6 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase SMC_N PF02463.14 gi|298675886|ref|YP_003727636.1| - 0.00073 18.8 0.0 0.16 11.2 0.0 2.4 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|298675886|ref|YP_003727636.1| - 0.0012 19.1 0.0 0.0026 18.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|298675886|ref|YP_003727636.1| - 0.0014 18.6 0.0 0.0047 16.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|298675886|ref|YP_003727636.1| - 0.0014 18.3 0.1 0.0068 16.0 0.0 2.1 3 0 0 3 3 3 1 NACHT domain NB-ARC PF00931.17 gi|298675886|ref|YP_003727636.1| - 0.0047 15.8 0.1 0.01 14.7 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.1 gi|298675886|ref|YP_003727636.1| - 0.0055 16.6 0.0 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|298675886|ref|YP_003727636.1| - 0.0065 16.2 0.0 0.021 14.5 0.0 1.8 2 0 0 2 2 1 1 Part of AAA domain Miro PF08477.8 gi|298675886|ref|YP_003727636.1| - 0.0073 16.7 0.0 0.016 15.7 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_5 PF07728.9 gi|298675886|ref|YP_003727636.1| - 0.011 15.3 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|298675886|ref|YP_003727636.1| - 0.016 14.7 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|298675886|ref|YP_003727636.1| - 0.016 14.6 0.1 0.054 12.9 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|298675886|ref|YP_003727636.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|298675886|ref|YP_003727636.1| - 0.021 14.0 0.0 0.047 12.9 0.0 1.5 2 0 0 2 2 1 0 PhoH-like protein T2SE PF00437.15 gi|298675886|ref|YP_003727636.1| - 0.028 13.3 0.0 0.049 12.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|298675886|ref|YP_003727636.1| - 0.042 13.2 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein MobB PF03205.9 gi|298675886|ref|YP_003727636.1| - 0.043 13.5 0.0 0.098 12.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|298675886|ref|YP_003727636.1| - 0.057 12.8 0.0 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|298675886|ref|YP_003727636.1| - 0.065 12.9 0.5 3 7.5 0.1 2.6 2 1 1 3 3 3 0 NTPase AAA_35 PF14516.1 gi|298675886|ref|YP_003727636.1| - 0.081 11.5 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|298675886|ref|YP_003727636.1| - 0.084 13.0 0.0 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|298675886|ref|YP_003727636.1| - 0.094 12.2 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|298675886|ref|YP_003727636.1| - 0.097 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|298675886|ref|YP_003727636.1| - 0.1 11.7 0.0 0.43 9.7 0.0 1.9 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI Adeno_IVa2 PF02456.10 gi|298675886|ref|YP_003727636.1| - 0.1 11.2 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein SbcCD_C PF13558.1 gi|298675886|ref|YP_003727636.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|298675886|ref|YP_003727636.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_13 PF13166.1 gi|298675886|ref|YP_003727636.1| - 0.13 10.7 0.0 0.29 9.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain Bactofilin PF04519.8 gi|298675887|ref|YP_003727637.1| - 2.9e-07 30.4 0.8 6e-07 29.4 0.3 1.7 1 1 1 2 2 2 1 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|298675887|ref|YP_003727637.1| - 8e-06 25.1 1.0 0.0032 16.8 0.0 3.2 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) SRP19 PF01922.12 gi|298675888|ref|YP_003727638.1| - 2e-29 102.0 0.5 2.2e-29 101.8 0.3 1.0 1 0 0 1 1 1 1 SRP19 protein AP_endonuc_2 PF01261.19 gi|298675890|ref|YP_003727640.1| - 9.6e-27 93.6 0.1 1.2e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|298675890|ref|YP_003727640.1| - 0.0059 15.6 0.1 0.011 14.8 0.1 1.3 1 1 0 1 1 1 1 UV-endonuclease UvdE HMGL-like PF00682.14 gi|298675890|ref|YP_003727640.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 HMGL-like DUF211 PF02680.9 gi|298675890|ref|YP_003727640.1| - 0.076 12.8 0.1 0.38 10.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 MtrE PF04206.7 gi|298675891|ref|YP_003727641.1| - 5.2e-128 425.7 12.8 6e-128 425.5 8.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E DUF2162 PF09930.4 gi|298675891|ref|YP_003727641.1| - 0.059 12.5 0.0 0.059 12.5 0.0 2.4 2 1 0 2 2 2 0 Predicted transporter (DUF2162) DUF2721 PF11026.3 gi|298675891|ref|YP_003727641.1| - 0.38 10.3 0.0 0.38 10.3 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) MtrD PF04207.7 gi|298675892|ref|YP_003727642.1| - 3.2e-95 317.7 26.7 4.1e-95 317.3 18.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.8 gi|298675893|ref|YP_003727643.1| - 9.3e-88 293.6 27.4 1.1e-87 293.4 19.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C Gram_pos_anchor PF00746.16 gi|298675893|ref|YP_003727643.1| - 0.8 9.5 0.1 0.8 9.5 0.0 5.0 6 0 0 6 6 6 0 Gram positive anchor MtrB PF05440.7 gi|298675894|ref|YP_003727644.1| - 3.7e-35 119.8 0.3 4.5e-35 119.5 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrF PF09472.5 gi|298675894|ref|YP_003727644.1| - 0.0014 17.8 0.7 0.0035 16.5 0.5 1.6 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.9 gi|298675895|ref|YP_003727645.1| - 1.8e-78 262.0 2.1 2.5e-78 261.5 1.4 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|298675895|ref|YP_003727645.1| - 0.0029 16.8 2.0 0.0063 15.7 1.4 1.5 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) GIDA PF01134.17 gi|298675895|ref|YP_003727645.1| - 0.035 12.9 0.3 0.099 11.4 0.2 1.7 1 1 0 1 1 1 0 Glucose inhibited division protein A MtrF PF09472.5 gi|298675896|ref|YP_003727646.1| - 1.6e-24 84.9 0.3 1.8e-24 84.7 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.8 gi|298675897|ref|YP_003727647.1| - 6.9e-33 112.1 0.6 8e-33 111.9 0.4 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G MtrH PF02007.13 gi|298675898|ref|YP_003727648.1| - 3.3e-136 453.1 1.9 3.8e-136 452.9 1.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF1894 PF08979.6 gi|298675900|ref|YP_003727650.1| - 7.7e-30 102.7 0.0 8.7e-30 102.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) AIRS_C PF02769.17 gi|298675901|ref|YP_003727651.1| - 3.8e-17 62.7 0.0 6.9e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|298675901|ref|YP_003727651.1| - 9.9e-17 60.9 0.2 2e-16 60.0 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain RRM_1 PF00076.17 gi|298675901|ref|YP_003727651.1| - 0.0051 16.4 0.1 0.011 15.3 0.1 1.5 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AA_kinase PF00696.23 gi|298675902|ref|YP_003727652.1| - 1.3e-51 175.4 2.0 1.6e-51 175.1 0.1 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|298675902|ref|YP_003727652.1| - 7.2e-23 79.8 6.1 1.9e-11 43.3 1.7 2.7 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|298675902|ref|YP_003727652.1| - 1.5e-20 72.2 3.7 3.6e-11 42.3 0.5 3.0 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|298675902|ref|YP_003727652.1| - 0.033 13.9 0.3 0.24 11.1 0.1 2.4 2 0 0 2 2 2 0 ACT domain LytR_C PF13399.1 gi|298675902|ref|YP_003727652.1| - 0.054 13.8 0.0 4.6 7.6 0.1 2.5 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator S-layer PF07752.6 gi|298675903|ref|YP_003727653.1| - 3.1e-09 36.4 9.2 0.00023 20.4 2.2 2.6 1 1 1 2 2 2 2 S-layer protein PhosphMutase PF10143.4 gi|298675904|ref|YP_003727654.1| - 6.6e-56 188.6 0.0 9.2e-56 188.1 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|298675904|ref|YP_003727654.1| - 9.1e-50 169.3 1.9 1e-49 169.1 1.3 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|298675904|ref|YP_003727654.1| - 4e-05 23.1 0.0 0.00014 21.3 0.0 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase HSP20 PF00011.16 gi|298675905|ref|YP_003727655.1| - 5.1e-24 84.0 0.8 5.8e-24 83.8 0.6 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|298675905|ref|YP_003727655.1| - 0.0012 19.3 0.2 0.0029 18.0 0.2 1.6 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|298675905|ref|YP_003727655.1| - 0.0076 15.9 0.8 0.012 15.2 0.5 1.3 1 1 0 1 1 1 1 GvpH TPP1 PF10341.4 gi|298675905|ref|YP_003727655.1| - 0.06 13.3 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 Shelterin complex subunit, TPP1/ACD HSP20 PF00011.16 gi|298675906|ref|YP_003727656.1| - 1.5e-24 85.8 3.0 1.8e-24 85.5 2.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|298675906|ref|YP_003727656.1| - 5e-05 23.7 0.1 0.00012 22.6 0.0 1.6 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|298675906|ref|YP_003727656.1| - 0.00053 19.6 0.8 0.00082 19.0 0.5 1.3 1 0 0 1 1 1 1 GvpH HSP20 PF00011.16 gi|298675907|ref|YP_003727657.1| - 9.4e-24 83.2 2.7 1.1e-23 82.9 1.9 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|298675907|ref|YP_003727657.1| - 0.00046 20.6 0.0 0.00094 19.6 0.0 1.5 1 1 0 1 1 1 1 CS domain GvpH PF05455.6 gi|298675907|ref|YP_003727657.1| - 0.0067 16.0 5.9 0.028 14.0 2.2 2.4 1 1 2 3 3 3 2 GvpH F420_ligase PF01996.11 gi|298675908|ref|YP_003727658.1| - 1.2e-64 217.5 0.3 1.4e-64 217.2 0.2 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase dCMP_cyt_deam_1 PF00383.17 gi|298675909|ref|YP_003727659.1| - 3.7e-28 97.1 3.0 4.9e-28 96.7 2.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region APOBEC_N PF08210.6 gi|298675909|ref|YP_003727659.1| - 2.4e-05 24.0 1.0 3.2e-05 23.6 0.7 1.2 1 0 0 1 1 1 1 APOBEC-like N-terminal domain XOO_2897-deam PF14440.1 gi|298675909|ref|YP_003727659.1| - 0.00021 21.0 0.1 0.00023 20.8 0.1 1.2 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase MafB19-deam PF14437.1 gi|298675909|ref|YP_003727659.1| - 0.00081 19.0 1.8 0.001 18.7 1.3 1.2 1 0 0 1 1 1 1 MafB19-like deaminase Bd3614-deam PF14439.1 gi|298675909|ref|YP_003727659.1| - 0.0041 16.9 1.2 0.0089 15.8 0.4 1.7 1 1 1 2 2 2 1 Bd3614-like deaminase OTT_1508_deam PF14441.1 gi|298675909|ref|YP_003727659.1| - 0.12 12.1 1.2 0.14 11.9 0.8 1.2 1 0 0 1 1 1 0 OTT_1508-like deaminase zf-C3HC4 PF00097.20 gi|298675909|ref|YP_003727659.1| - 0.5 10.0 6.9 0.27 10.9 2.5 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) SecD_SecF PF02355.11 gi|298675910|ref|YP_003727660.1| - 3.8e-37 127.3 13.7 3.8e-37 127.3 9.5 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|298675910|ref|YP_003727660.1| - 0.00033 19.6 0.0 0.0008 18.5 0.0 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|298675910|ref|YP_003727660.1| - 0.017 13.0 13.4 0.023 12.6 9.3 1.1 1 0 0 1 1 1 0 Patched family EVI2A PF05399.6 gi|298675910|ref|YP_003727660.1| - 1.4 8.1 3.7 1 8.5 0.1 2.4 3 1 0 3 3 3 0 Ectropic viral integration site 2A protein (EVI2A) DUF1212 PF06738.7 gi|298675910|ref|YP_003727660.1| - 5 6.5 11.1 3.5 7.0 5.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) SecD_SecF PF02355.11 gi|298675911|ref|YP_003727661.1| - 2.7e-15 56.0 5.1 5.5e-15 55.0 3.5 1.4 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|298675911|ref|YP_003727661.1| - 5.5e-05 22.1 0.1 0.00014 20.8 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|298675911|ref|YP_003727661.1| - 0.0037 16.0 10.2 0.0079 14.9 7.1 1.5 1 0 0 1 1 1 1 MMPL family Podoplanin PF05808.6 gi|298675911|ref|YP_003727661.1| - 0.31 10.5 6.1 0.57 9.7 0.5 2.6 2 0 0 2 2 2 0 Podoplanin DNA_pol3_delta2 PF13177.1 gi|298675912|ref|YP_003727662.1| - 9.5e-18 64.3 0.5 3.4e-17 62.5 0.1 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|298675912|ref|YP_003727662.1| - 2.9e-14 52.7 2.2 4.5e-14 52.1 0.2 2.3 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|298675912|ref|YP_003727662.1| - 9.7e-10 38.7 0.0 3.1e-09 37.1 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|298675912|ref|YP_003727662.1| - 8.6e-08 31.8 0.5 2.1e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|298675912|ref|YP_003727662.1| - 9.1e-07 28.8 1.9 1.9e-06 27.7 0.2 2.3 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|298675912|ref|YP_003727662.1| - 3.8e-06 25.8 0.1 5.5e-06 25.3 0.1 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|298675912|ref|YP_003727662.1| - 6.2e-06 26.3 0.0 0.00022 21.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|298675912|ref|YP_003727662.1| - 2.9e-05 23.2 0.0 0.61 9.0 0.0 3.0 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus Arch_ATPase PF01637.13 gi|298675912|ref|YP_003727662.1| - 7e-05 22.6 0.4 0.00013 21.7 0.1 1.6 1 1 1 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|298675912|ref|YP_003727662.1| - 0.00026 21.3 0.1 0.0038 17.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|298675912|ref|YP_003727662.1| - 0.0016 17.2 0.1 0.19 10.4 0.0 3.3 1 1 1 3 3 3 1 TIP49 C-terminus AAA_17 PF13207.1 gi|298675912|ref|YP_003727662.1| - 0.0025 18.6 0.1 0.089 13.6 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298675912|ref|YP_003727662.1| - 0.0078 16.2 0.0 0.2 11.6 0.0 2.5 1 1 0 1 1 1 1 AAA ATPase domain Sigma54_activ_2 PF14532.1 gi|298675912|ref|YP_003727662.1| - 0.016 15.2 0.1 0.045 13.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF3647 PF12363.3 gi|298675912|ref|YP_003727662.1| - 0.07 13.2 0.9 0.36 10.9 0.6 2.1 1 1 0 1 1 1 0 Phage protein AAA_33 PF13671.1 gi|298675912|ref|YP_003727662.1| - 0.095 12.5 0.0 0.22 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|298675912|ref|YP_003727662.1| - 0.11 12.6 0.1 0.41 10.8 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Radical_SAM PF04055.16 gi|298675913|ref|YP_003727663.1| - 6e-17 62.3 0.1 3.1e-16 59.9 0.0 2.2 3 0 0 3 3 3 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|298675913|ref|YP_003727663.1| - 6.9e-09 35.6 0.2 2.4e-08 33.9 0.1 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|298675913|ref|YP_003727663.1| - 0.0012 18.9 0.3 0.0065 16.5 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|298675913|ref|YP_003727663.1| - 0.081 13.1 0.8 0.73 10.0 0.6 2.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TrmB PF01978.14 gi|298675914|ref|YP_003727664.1| - 1.6e-05 24.5 0.1 2.9e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|298675914|ref|YP_003727664.1| - 0.002 17.7 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sporozoite_P67 PF05642.6 gi|298675914|ref|YP_003727664.1| - 0.012 13.5 0.8 0.012 13.5 0.6 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen PUL PF08324.6 gi|298675914|ref|YP_003727664.1| - 0.015 14.0 3.3 0.017 13.8 2.3 1.2 1 0 0 1 1 1 0 PUL domain UBN2 PF14223.1 gi|298675914|ref|YP_003727664.1| - 0.034 13.9 4.6 1.6 8.5 3.2 2.2 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type 7TMR-HDED PF07697.6 gi|298675914|ref|YP_003727664.1| - 0.041 13.6 1.9 0.054 13.2 1.3 1.2 1 0 0 1 1 1 0 7TM-HD extracellular Peptidase_S64 PF08192.6 gi|298675914|ref|YP_003727664.1| - 0.097 10.9 3.2 0.11 10.8 2.2 1.1 1 0 0 1 1 1 0 Peptidase family S64 HeLo PF14479.1 gi|298675914|ref|YP_003727664.1| - 0.1 12.3 4.5 0.091 12.4 1.0 1.9 1 1 1 2 2 2 0 Prion-inhibition and propagation DUF3452 PF11934.3 gi|298675914|ref|YP_003727664.1| - 0.14 11.4 1.2 0.21 10.8 0.8 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3452) FCH PF00611.18 gi|298675914|ref|YP_003727664.1| - 0.29 11.3 1.8 0.61 10.3 0.3 2.0 2 0 0 2 2 2 0 Fes/CIP4, and EFC/F-BAR homology domain TraF_2 PF13729.1 gi|298675914|ref|YP_003727664.1| - 0.36 9.5 3.0 0.45 9.2 2.0 1.3 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein CbiA PF01656.18 gi|298675915|ref|YP_003727665.1| - 4.3e-21 75.2 0.0 5e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|298675915|ref|YP_003727665.1| - 4.5e-17 62.4 0.0 8.8e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|298675915|ref|YP_003727665.1| - 3.7e-07 29.4 0.0 7.3e-06 25.2 0.0 2.1 1 1 1 2 2 2 1 ATPase MipZ VirC1 PF07015.6 gi|298675915|ref|YP_003727665.1| - 0.0012 17.9 0.0 0.026 13.5 0.0 2.1 2 0 0 2 2 2 1 VirC1 protein YhjQ PF06564.7 gi|298675915|ref|YP_003727665.1| - 0.0044 16.3 0.0 0.032 13.5 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein ParA PF10609.4 gi|298675915|ref|YP_003727665.1| - 0.0068 16.2 0.5 0.012 15.5 0.3 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|298675915|ref|YP_003727665.1| - 0.017 14.2 0.1 0.075 12.0 0.1 2.1 1 1 0 1 1 1 0 Anion-transporting ATPase SRP54 PF00448.17 gi|298675915|ref|YP_003727665.1| - 0.034 13.5 0.1 4 6.8 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain LpxK PF02606.9 gi|298675915|ref|YP_003727665.1| - 0.048 12.6 0.0 0.08 11.8 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_25 PF13481.1 gi|298675915|ref|YP_003727665.1| - 0.055 12.8 0.8 0.22 10.8 0.6 2.0 1 1 0 1 1 1 0 AAA domain Trep_Strep PF09605.5 gi|298675916|ref|YP_003727666.1| - 2.4 7.7 19.2 2.1 7.9 11.6 2.1 2 1 1 3 3 3 0 Hypothetical bacterial integral membrane protein (Trep_Strep) NVEALA PF14055.1 gi|298675916|ref|YP_003727666.1| - 2.9 7.6 5.4 1 9.1 0.1 2.8 4 0 0 4 4 4 0 NVEALA protein DUF1699 PF08004.6 gi|298675917|ref|YP_003727667.1| - 9.7e-60 199.8 2.5 1.1e-59 199.6 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1699) Chordopox_L2 PF05803.7 gi|298675917|ref|YP_003727667.1| - 0.073 12.7 0.4 0.13 11.9 0.3 1.4 1 0 0 1 1 1 0 Chordopoxvirus L2 protein UPF0047 PF01894.12 gi|298675918|ref|YP_003727668.1| - 1.1e-32 112.3 0.0 1.3e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 CCP_MauG PF03150.9 gi|298675918|ref|YP_003727668.1| - 0.078 13.2 0.0 0.078 13.2 0.0 1.1 1 0 0 1 1 1 0 Di-haem cytochrome c peroxidase MNSV_P7B PF06692.6 gi|298675919|ref|YP_003727669.1| - 0.094 12.5 1.4 0.16 11.7 0.1 1.7 1 1 1 2 2 2 0 Melon necrotic spot virus P7B protein SdpI PF13630.1 gi|298675919|ref|YP_003727669.1| - 0.35 10.6 3.0 0.39 10.4 2.1 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family FeoB_C PF07664.7 gi|298675919|ref|YP_003727669.1| - 8.1 5.9 7.1 4.1 6.8 0.6 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus Hjc PF01870.13 gi|298675920|ref|YP_003727670.1| - 0.021 14.3 0.0 0.044 13.3 0.0 1.6 1 1 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) DHH PF01368.15 gi|298675921|ref|YP_003727671.1| - 9.9e-15 54.4 0.9 1.5e-14 53.8 0.6 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|298675921|ref|YP_003727671.1| - 1e-12 47.5 0.1 2.3e-12 46.4 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain Zn_protease PF05618.6 gi|298675922|ref|YP_003727672.1| - 3e-12 46.4 0.0 7.7e-12 45.0 0.0 1.6 1 1 0 1 1 1 1 Putative ATP-dependant zinc protease Pep_deformylase PF01327.16 gi|298675922|ref|YP_003727672.1| - 1.4e-05 24.5 0.1 8.6e-05 21.9 0.0 1.9 1 1 0 1 1 1 1 Polypeptide deformylase FdhD-NarQ PF02634.10 gi|298675923|ref|YP_003727673.1| - 1.2e-52 178.7 0.0 1.4e-52 178.4 0.0 1.1 1 0 0 1 1 1 1 FdhD/NarQ family AAA_16 PF13191.1 gi|298675924|ref|YP_003727674.1| - 1.4e-12 47.9 0.0 5.4e-11 42.8 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|298675924|ref|YP_003727674.1| - 3.5e-07 30.1 0.0 5.9e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|298675924|ref|YP_003727674.1| - 3.6e-07 29.9 0.0 6.7e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|298675924|ref|YP_003727674.1| - 1.1e-06 28.7 0.1 5.1e-06 26.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|298675924|ref|YP_003727674.1| - 8.3e-06 25.5 0.0 8.3e-06 25.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|298675924|ref|YP_003727674.1| - 1.1e-05 25.0 0.1 6.4e-05 22.6 0.0 2.4 3 0 0 3 3 1 1 CDC6, C terminal AAA PF00004.24 gi|298675924|ref|YP_003727674.1| - 1.4e-05 25.2 0.0 3.4e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|298675924|ref|YP_003727674.1| - 3.8e-05 22.6 0.0 5.2e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_19 PF13245.1 gi|298675924|ref|YP_003727674.1| - 0.00023 20.8 0.0 0.00061 19.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|298675924|ref|YP_003727674.1| - 0.0024 17.3 0.0 0.004 16.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|298675924|ref|YP_003727674.1| - 0.0033 17.1 0.0 0.0077 15.9 0.0 1.6 1 0 0 1 1 1 1 NTPase T2SE PF00437.15 gi|298675924|ref|YP_003727674.1| - 0.0047 15.8 0.0 0.0071 15.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF2075 PF09848.4 gi|298675924|ref|YP_003727674.1| - 0.0058 15.6 0.0 0.0091 15.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|298675924|ref|YP_003727674.1| - 0.0096 15.3 1.5 1.4 8.2 0.1 2.9 3 1 0 3 3 3 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|298675924|ref|YP_003727674.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|298675924|ref|YP_003727674.1| - 0.016 14.1 0.2 11 4.9 0.0 2.8 2 1 0 3 3 3 0 KAP family P-loop domain AAA_18 PF13238.1 gi|298675924|ref|YP_003727674.1| - 0.018 15.3 0.0 0.083 13.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.8 gi|298675924|ref|YP_003727674.1| - 0.018 13.9 0.0 0.12 11.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) KaiC PF06745.8 gi|298675924|ref|YP_003727674.1| - 0.02 14.0 0.0 0.08 12.0 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_17 PF13207.1 gi|298675924|ref|YP_003727674.1| - 0.023 15.5 1.4 0.069 13.9 0.9 2.3 1 1 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|298675924|ref|YP_003727674.1| - 0.029 14.2 0.0 0.067 13.0 0.0 1.6 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit AAA_35 PF14516.1 gi|298675924|ref|YP_003727674.1| - 0.029 12.9 0.1 0.35 9.4 0.1 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|298675924|ref|YP_003727674.1| - 0.031 14.1 0.3 0.18 11.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|298675924|ref|YP_003727674.1| - 0.031 13.3 0.0 0.19 10.7 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin AAA_32 PF13654.1 gi|298675924|ref|YP_003727674.1| - 0.033 12.8 0.0 0.52 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|298675924|ref|YP_003727674.1| - 0.038 14.1 0.0 0.11 12.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase TrwB_AAD_bind PF10412.4 gi|298675924|ref|YP_003727674.1| - 0.044 12.3 0.0 0.072 11.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|298675924|ref|YP_003727674.1| - 0.046 13.1 0.0 0.084 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|298675924|ref|YP_003727674.1| - 0.057 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF835 PF05763.7 gi|298675924|ref|YP_003727674.1| - 0.066 12.7 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) AAA_33 PF13671.1 gi|298675924|ref|YP_003727674.1| - 0.1 12.4 0.0 0.39 10.5 0.0 2.0 2 0 0 2 2 1 0 AAA domain RuvB_N PF05496.7 gi|298675924|ref|YP_003727674.1| - 0.15 11.0 0.2 0.34 9.9 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_30 PF13604.1 gi|298675924|ref|YP_003727674.1| - 0.2 11.2 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Cpn60_TCP1 PF00118.19 gi|298675925|ref|YP_003727675.1| - 1.1e-173 578.3 13.5 1.3e-173 578.0 9.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family MFS_1 PF07690.11 gi|298675927|ref|YP_003727677.1| - 4.3e-54 183.5 42.7 4.3e-54 183.5 29.6 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|298675927|ref|YP_003727677.1| - 7.5e-11 40.8 22.5 9.7e-11 40.4 15.6 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|298675927|ref|YP_003727677.1| - 5.6e-09 34.8 34.7 1e-05 24.1 6.5 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|298675927|ref|YP_003727677.1| - 3.7e-06 25.7 14.8 3.7e-06 25.7 10.2 3.0 1 1 0 3 3 3 2 Sugar (and other) transporter UPF0197 PF05251.7 gi|298675927|ref|YP_003727677.1| - 0.028 14.7 3.0 0.028 14.7 2.1 3.6 4 1 0 4 4 4 0 Uncharacterised protein family (UPF0197) Peptidase_M50 PF02163.17 gi|298675928|ref|YP_003727678.1| - 2.5e-16 59.2 9.5 1.2e-14 53.6 6.6 2.6 1 1 0 1 1 1 1 Peptidase family M50 DUF126 PF01989.11 gi|298675929|ref|YP_003727679.1| - 3.7e-36 122.6 0.2 5.6e-36 122.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|298675930|ref|YP_003727680.1| - 3.5e-151 503.2 0.0 4e-151 503.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PhnA_Zn_Ribbon PF08274.7 gi|298675930|ref|YP_003727680.1| - 0.027 14.2 3.3 0.28 10.9 0.2 2.7 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UbiD PF01977.11 gi|298675931|ref|YP_003727681.1| - 6.2e-124 413.5 0.2 7e-124 413.3 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Metallophos_3 PF14582.1 gi|298675932|ref|YP_003727682.1| - 1.9e-103 345.0 0.2 2.1e-103 344.9 0.1 1.0 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.2 gi|298675932|ref|YP_003727682.1| - 3.5e-23 82.1 0.0 4.5e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|298675932|ref|YP_003727682.1| - 6.3e-19 68.1 0.0 9.4e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.11 gi|298675932|ref|YP_003727682.1| - 0.015 14.5 0.0 0.035 13.3 0.0 1.6 2 0 0 2 2 2 0 DNA polymerase alpha/epsilon subunit B PhoD PF09423.5 gi|298675932|ref|YP_003727682.1| - 0.033 12.7 0.0 0.043 12.3 0.0 1.1 1 0 0 1 1 1 0 PhoD-like phosphatase DUF2622 PF11080.3 gi|298675933|ref|YP_003727683.1| - 0.082 12.7 2.4 0.23 11.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2622) Rubrerythrin PF02915.12 gi|298675934|ref|YP_003727684.1| - 1.8e-31 109.2 2.4 2.4e-31 108.8 1.7 1.2 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|298675934|ref|YP_003727684.1| - 3.3e-10 39.8 8.8 3.8e-09 36.4 1.8 1.8 1 1 1 2 2 2 2 Ferritin-like domain DUF892 PF05974.7 gi|298675934|ref|YP_003727684.1| - 0.0002 21.2 0.4 0.1 12.3 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) HypA PF01155.14 gi|298675934|ref|YP_003727684.1| - 0.011 15.3 1.9 0.029 14.0 1.3 2.0 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family BAR_3_WASP_bdg PF10456.4 gi|298675934|ref|YP_003727684.1| - 0.021 14.0 0.1 0.049 12.8 0.1 1.6 1 1 0 1 1 1 0 WASP-binding domain of Sorting nexin protein DUF3279 PF11682.3 gi|298675934|ref|YP_003727684.1| - 0.039 13.5 1.6 0.068 12.7 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) Arfaptin PF06456.8 gi|298675934|ref|YP_003727684.1| - 0.056 12.7 1.0 0.36 10.1 0.7 2.0 1 1 0 1 1 1 0 Arfaptin-like domain RNA_POL_M_15KD PF02150.11 gi|298675934|ref|YP_003727684.1| - 0.063 12.9 0.2 0.063 12.9 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit SDP_N PF12278.3 gi|298675934|ref|YP_003727684.1| - 0.065 12.8 1.0 2.4 7.7 0.0 2.2 2 0 0 2 2 2 0 Sex determination protein N terminal Evr1_Alr PF04777.8 gi|298675934|ref|YP_003727684.1| - 0.072 13.0 1.9 1.2 9.0 0.2 2.2 2 0 0 2 2 2 0 Erv1 / Alr family Not3 PF04065.10 gi|298675934|ref|YP_003727684.1| - 0.1 11.8 3.5 0.21 10.8 0.2 2.1 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF2202 PF09968.4 gi|298675934|ref|YP_003727684.1| - 0.17 11.5 3.3 1.2 8.7 0.3 2.1 1 1 0 2 2 2 0 Uncharacterized protein domain (DUF2202) UvrD_C PF13361.1 gi|298675934|ref|YP_003727684.1| - 0.34 10.3 4.7 0.3 10.4 0.5 2.0 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain tRNA-synt_1g PF09334.6 gi|298675934|ref|YP_003727684.1| - 0.37 9.4 3.9 0.22 10.1 1.2 1.6 2 0 0 2 2 2 0 tRNA synthetases class I (M) DUF4379 PF14311.1 gi|298675934|ref|YP_003727684.1| - 1.2 9.0 8.0 6 6.7 4.5 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4379) DNA_ligase_ZBD PF03119.11 gi|298675934|ref|YP_003727684.1| - 2.5 7.8 6.2 46 3.8 1.7 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Aldolase_II PF00596.16 gi|298675936|ref|YP_003727686.1| - 2e-32 112.2 0.0 2.3e-32 112.1 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CDP-OH_P_transf PF01066.16 gi|298675937|ref|YP_003727687.1| - 1.7e-15 57.1 14.4 8.4e-15 54.9 10.0 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Archease PF01951.11 gi|298675938|ref|YP_003727688.1| - 1.7e-43 147.8 0.2 2.1e-43 147.5 0.2 1.1 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) TRAP_beta PF05753.9 gi|298675938|ref|YP_003727688.1| - 0.087 11.9 0.1 0.15 11.1 0.1 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) UPF0150 PF03681.10 gi|298675938|ref|YP_003727688.1| - 0.12 12.0 0.4 0.33 10.6 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) RtcB PF01139.12 gi|298675939|ref|YP_003727689.1| - 1.5e-156 521.6 0.1 1.7e-156 521.4 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB TGT_C2 PF14810.1 gi|298675940|ref|YP_003727690.1| - 5.8e-30 102.9 0.0 9.9e-30 102.2 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|298675940|ref|YP_003727690.1| - 1.8e-15 56.3 0.1 3.3e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 PUA domain Bactofilin PF04519.8 gi|298675941|ref|YP_003727691.1| - 3.1e-10 39.9 12.5 7.3e-06 25.9 0.4 3.7 2 2 1 3 3 3 3 Polymer-forming cytoskeletal DUF3494 PF11999.3 gi|298675941|ref|YP_003727691.1| - 0.00048 19.8 3.4 0.0077 15.8 0.1 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF3494) Hexapep PF00132.19 gi|298675941|ref|YP_003727691.1| - 0.25 10.9 31.2 3.2 7.3 1.2 7.1 7 2 1 9 9 9 0 Bacterial transferase hexapeptide (six repeats) HTH_5 PF01022.15 gi|298675942|ref|YP_003727692.1| - 9.7e-15 53.9 0.8 2.1e-14 52.8 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|298675942|ref|YP_003727692.1| - 3.8e-12 45.8 0.1 5.3e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|298675942|ref|YP_003727692.1| - 6.8e-09 35.2 0.1 1.1e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|298675942|ref|YP_003727692.1| - 2.3e-08 33.3 0.5 4.6e-08 32.3 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|298675942|ref|YP_003727692.1| - 5.8e-08 32.2 0.2 9.9e-08 31.5 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|298675942|ref|YP_003727692.1| - 3.2e-07 29.9 0.0 5.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|298675942|ref|YP_003727692.1| - 9.5e-07 29.0 0.1 1.5e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|298675942|ref|YP_003727692.1| - 2e-06 27.4 0.1 3.3e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|298675942|ref|YP_003727692.1| - 2.6e-05 24.1 0.0 3.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|298675942|ref|YP_003727692.1| - 4.5e-05 23.3 0.0 6.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|298675942|ref|YP_003727692.1| - 5.6e-05 22.9 0.0 8.8e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|298675942|ref|YP_003727692.1| - 0.00037 20.2 0.3 0.00056 19.6 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_10 PF04967.7 gi|298675942|ref|YP_003727692.1| - 0.00057 19.4 0.1 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|298675942|ref|YP_003727692.1| - 0.00089 18.8 0.0 0.0017 17.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain DDRGK PF09756.4 gi|298675942|ref|YP_003727692.1| - 0.00094 18.6 0.1 0.0013 18.2 0.1 1.1 1 0 0 1 1 1 1 DDRGK domain PadR PF03551.9 gi|298675942|ref|YP_003727692.1| - 0.001 18.7 0.1 0.0015 18.2 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|298675942|ref|YP_003727692.1| - 0.0011 19.0 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor Sulfolobus_pRN PF05584.6 gi|298675942|ref|YP_003727692.1| - 0.0019 18.1 0.6 0.0029 17.5 0.4 1.2 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_11 PF08279.7 gi|298675942|ref|YP_003727692.1| - 0.0022 17.6 0.3 0.0037 16.8 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|298675942|ref|YP_003727692.1| - 0.0028 17.4 0.0 0.0049 16.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain IF2_N PF04760.10 gi|298675942|ref|YP_003727692.1| - 0.0029 17.2 0.4 0.0082 15.7 0.1 1.9 1 1 1 2 2 2 1 Translation initiation factor IF-2, N-terminal region Rrf2 PF02082.15 gi|298675942|ref|YP_003727692.1| - 0.0034 17.4 0.0 0.0057 16.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.1 gi|298675942|ref|YP_003727692.1| - 0.0035 17.4 0.0 0.0047 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_DeoR PF08220.7 gi|298675942|ref|YP_003727692.1| - 0.0041 16.6 0.1 0.0064 16.0 0.1 1.2 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|298675942|ref|YP_003727692.1| - 0.0051 16.2 0.1 0.0078 15.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MetJ PF01340.15 gi|298675942|ref|YP_003727692.1| - 0.0062 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Met Apo-repressor, MetJ HTH_36 PF13730.1 gi|298675942|ref|YP_003727692.1| - 0.0069 16.4 0.1 0.026 14.6 0.1 2.1 2 1 0 2 2 1 1 Helix-turn-helix domain DUF2250 PF10007.4 gi|298675942|ref|YP_003727692.1| - 0.0087 15.9 1.8 0.092 12.6 1.3 2.1 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Mga PF05043.8 gi|298675942|ref|YP_003727692.1| - 0.018 15.3 0.3 0.031 14.5 0.2 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain TFIIE_alpha PF02002.12 gi|298675942|ref|YP_003727692.1| - 0.018 14.5 0.3 0.026 13.9 0.2 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit FaeA PF04703.7 gi|298675942|ref|YP_003727692.1| - 0.03 14.4 0.0 0.054 13.6 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein LexA_DNA_bind PF01726.11 gi|298675942|ref|YP_003727692.1| - 0.048 13.2 0.1 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain PaaX PF07848.7 gi|298675942|ref|YP_003727692.1| - 0.05 13.5 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_41 PF14502.1 gi|298675942|ref|YP_003727692.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.6 gi|298675942|ref|YP_003727692.1| - 0.077 12.2 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_22 PF13309.1 gi|298675942|ref|YP_003727692.1| - 0.08 12.7 0.0 0.81 9.4 0.0 2.2 1 1 0 1 1 1 0 HTH domain DUF4366 PF14283.1 gi|298675942|ref|YP_003727692.1| - 0.098 12.0 0.0 0.34 10.3 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4366) EAP30 PF04157.11 gi|298675942|ref|YP_003727692.1| - 0.13 11.3 0.0 0.43 9.7 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_23 PF13384.1 gi|298675942|ref|YP_003727692.1| - 0.15 11.7 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF4367 PF14285.1 gi|298675942|ref|YP_003727692.1| - 0.15 11.3 0.5 0.63 9.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4367) DUF4139 PF13598.1 gi|298675943|ref|YP_003727693.1| - 5.1e-09 35.8 1.6 4.4e-06 26.2 0.6 3.1 3 1 0 3 3 3 2 Domain of unknown function (DUF4139) SM-ATX PF14438.1 gi|298675943|ref|YP_003727693.1| - 0.021 14.7 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Ataxin 2 SM domain DUF4140 PF13600.1 gi|298675943|ref|YP_003727693.1| - 0.022 15.2 0.0 0.066 13.6 0.0 1.8 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) LSM PF01423.17 gi|298675943|ref|YP_003727693.1| - 0.047 13.2 0.7 0.12 11.9 0.1 2.0 2 0 0 2 2 2 0 LSM domain OrfB_IS605 PF01385.14 gi|298675944|ref|YP_003727694.1| - 2.7e-50 170.8 1.2 5.8e-50 169.7 0.8 1.6 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298675944|ref|YP_003727694.1| - 1.6e-09 37.2 0.3 6.8e-09 35.2 0.1 2.2 2 1 0 2 2 2 1 Putative transposase DNA-binding domain DUF919 PF06034.6 gi|298675944|ref|YP_003727694.1| - 0.0034 16.9 0.5 0.0096 15.5 0.3 1.8 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) UPF0081 PF03652.10 gi|298675944|ref|YP_003727694.1| - 0.0081 16.2 0.0 0.027 14.6 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0081) Aminotran_3 PF00202.16 gi|298675945|ref|YP_003727695.1| - 1.9e-113 378.7 0.1 2.2e-113 378.5 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.14 gi|298675945|ref|YP_003727695.1| - 9.5e-05 21.2 0.1 0.00045 19.0 0.1 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|298675945|ref|YP_003727695.1| - 0.00014 20.9 0.0 0.00066 18.7 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|298675945|ref|YP_003727695.1| - 0.0026 16.1 0.0 0.0038 15.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Sigma70_r1_1 PF03979.9 gi|298675945|ref|YP_003727695.1| - 0.026 14.4 0.1 0.43 10.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 StbA PF06406.6 gi|298675945|ref|YP_003727695.1| - 0.029 13.3 0.1 0.057 12.3 0.0 1.4 1 0 0 1 1 1 0 StbA protein Aminotran_1_2 PF00155.16 gi|298675946|ref|YP_003727696.1| - 9.3e-63 212.3 0.0 1e-62 212.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|298675946|ref|YP_003727696.1| - 1e-10 41.1 0.0 1.6e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|298675946|ref|YP_003727696.1| - 1.7e-06 26.6 0.0 4.6e-06 25.1 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|298675946|ref|YP_003727696.1| - 7.9e-06 24.7 0.0 4.9e-05 22.1 0.0 1.9 2 0 0 2 2 2 1 Allinase Aminotran_5 PF00266.14 gi|298675946|ref|YP_003727696.1| - 0.00022 20.1 0.0 0.00059 18.6 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V RNase_H_2 PF13482.1 gi|298675947|ref|YP_003727697.1| - 8.9e-33 113.4 0.5 1.4e-32 112.7 0.3 1.3 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.14 gi|298675947|ref|YP_003727697.1| - 0.0014 17.5 0.0 0.0023 16.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_T PF00929.19 gi|298675947|ref|YP_003727697.1| - 0.027 14.7 0.1 9.8 6.4 0.0 2.3 1 1 1 2 2 2 0 Exonuclease HHH_5 PF14520.1 gi|298675947|ref|YP_003727697.1| - 0.034 14.3 0.0 0.087 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DNA_pol_B_exo2 PF10108.4 gi|298675947|ref|YP_003727697.1| - 0.11 12.0 0.0 6.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB UvrC_HhH_N PF08459.6 gi|298675948|ref|YP_003727698.1| - 1.8e-54 183.4 0.0 7.9e-54 181.4 0.0 2.1 2 0 0 2 2 2 1 UvrC Helix-hairpin-helix N-terminal HHH_2 PF12826.2 gi|298675948|ref|YP_003727698.1| - 4.3e-15 55.3 0.1 1.5e-14 53.5 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif GIY-YIG PF01541.19 gi|298675948|ref|YP_003727698.1| - 4e-12 46.3 0.8 6.9e-11 42.3 0.2 2.9 2 0 0 2 2 2 1 GIY-YIG catalytic domain HHH_5 PF14520.1 gi|298675948|ref|YP_003727698.1| - 2.1e-10 40.6 0.0 6.5e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain UVR PF02151.14 gi|298675948|ref|YP_003727698.1| - 5.7e-10 38.3 2.8 1.4e-09 37.1 2.0 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif HHH PF00633.18 gi|298675948|ref|YP_003727698.1| - 3e-07 29.7 0.0 0.0019 17.7 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|298675948|ref|YP_003727698.1| - 0.00013 22.1 2.6 0.00038 20.6 0.0 2.9 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|298675948|ref|YP_003727698.1| - 0.00032 20.5 0.1 0.0052 16.6 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif GPI PF06560.6 gi|298675949|ref|YP_003727699.1| - 1.9e-58 196.4 3.5 2.3e-58 196.2 2.4 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|298675949|ref|YP_003727699.1| - 0.00013 21.3 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|298675949|ref|YP_003727699.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF1971 PF09313.6 gi|298675949|ref|YP_003727699.1| - 0.093 12.4 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1971) DUF128 PF01995.11 gi|298675950|ref|YP_003727700.1| - 4.3e-93 310.6 3.4 4.8e-93 310.4 2.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 Aminotran_5 PF00266.14 gi|298675951|ref|YP_003727701.1| - 4e-126 420.7 0.0 4.5e-126 420.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|298675951|ref|YP_003727701.1| - 6.6e-13 48.4 0.8 8.3e-13 48.0 0.1 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|298675951|ref|YP_003727701.1| - 1.1e-07 31.1 0.0 6.8e-07 28.5 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|298675951|ref|YP_003727701.1| - 2.1e-07 29.5 0.1 4e-07 28.6 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|298675951|ref|YP_003727701.1| - 0.0001 21.5 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SHMT PF00464.14 gi|298675951|ref|YP_003727701.1| - 0.053 11.8 0.0 0.083 11.2 0.0 1.3 1 0 0 1 1 1 0 Serine hydroxymethyltransferase YcaO PF02624.11 gi|298675953|ref|YP_003727703.1| - 8.4e-79 265.4 0.0 1.2e-78 264.9 0.0 1.2 1 0 0 1 1 1 1 YcaO-like family TfuA PF07812.7 gi|298675954|ref|YP_003727704.1| - 5.4e-46 154.9 0.0 9.9e-45 150.8 0.0 2.6 3 0 0 3 3 3 1 TfuA-like protein PSRP-3_Ycf65 PF04839.8 gi|298675954|ref|YP_003727704.1| - 0.041 13.9 0.7 0.25 11.4 0.3 2.3 2 0 0 2 2 2 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) Regulator_TrmB PF11495.3 gi|298675954|ref|YP_003727704.1| - 0.051 12.5 0.0 5.4 5.9 0.0 2.2 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB Cytochrome_C554 PF13435.1 gi|298675955|ref|YP_003727705.1| - 1.6e-12 47.5 23.4 3.1e-05 24.0 2.3 3.5 1 1 2 3 3 3 3 Cytochrome c554 and c-prime Paired_CXXCH_1 PF09699.5 gi|298675955|ref|YP_003727705.1| - 1.2e-11 43.9 24.0 2.8e-05 23.5 2.3 5.4 4 2 1 5 5 5 3 Doubled CXXCH motif (Paired_CXXCH_1) Cytochrom_c3_2 PF14537.1 gi|298675955|ref|YP_003727705.1| - 1.1e-10 41.7 26.6 0.06 13.6 1.3 3.9 2 2 0 2 2 2 2 Cytochrome c3 Cytochrome_C7 PF14522.1 gi|298675955|ref|YP_003727705.1| - 5.7e-10 38.6 31.8 0.00082 18.9 4.9 4.8 1 1 2 3 3 3 2 Cytochrome c7 Cytochrom_NNT PF03264.9 gi|298675955|ref|YP_003727705.1| - 3.5e-06 26.5 27.8 0.0022 17.4 0.6 5.7 1 1 4 5 5 5 4 NapC/NirT cytochrome c family, N-terminal region Cytochrom_C PF00034.16 gi|298675955|ref|YP_003727705.1| - 0.077 13.8 0.0 0.077 13.8 0.0 6.3 5 2 1 6 6 6 0 Cytochrome c SlyX PF04102.7 gi|298675955|ref|YP_003727705.1| - 0.088 13.1 2.6 0.16 12.3 1.0 2.0 2 0 0 2 2 2 0 SlyX Cytochrom_CIII PF02085.11 gi|298675955|ref|YP_003727705.1| - 0.21 11.6 28.9 3.4 7.8 8.1 4.6 2 2 1 3 3 3 0 Class III cytochrome C family zinc_ribbon_2 PF13240.1 gi|298675955|ref|YP_003727705.1| - 0.81 9.2 10.0 0.46 10.0 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain DnaJ_CXXCXGXG PF00684.14 gi|298675955|ref|YP_003727705.1| - 1.1 9.3 15.5 13 5.9 0.2 4.9 5 1 0 5 5 5 0 DnaJ central domain Cytochrome_CBB3 PF13442.1 gi|298675955|ref|YP_003727705.1| - 1.2 9.3 0.0 1.2 9.3 0.0 7.0 4 2 0 5 5 3 0 Cytochrome C oxidase, cbb3-type, subunit III Gin PF10764.4 gi|298675955|ref|YP_003727705.1| - 1.5 8.5 6.3 0.22 11.2 0.3 2.7 3 0 0 3 3 3 0 Inhibitor of sigma-G Gin DUF169 PF02596.10 gi|298675956|ref|YP_003727706.1| - 1.1e-68 230.8 0.2 1.3e-68 230.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 GYD PF08734.6 gi|298675957|ref|YP_003727707.1| - 1.3e-25 88.8 0.1 1.5e-25 88.7 0.0 1.0 1 0 0 1 1 1 1 GYD domain AsnC_trans_reg PF01037.16 gi|298675957|ref|YP_003727707.1| - 0.037 13.7 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 AsnC family HhH-GPD PF00730.20 gi|298675958|ref|YP_003727708.1| - 0.00035 20.8 0.1 0.00055 20.2 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF1886 PF09171.5 gi|298675958|ref|YP_003727708.1| - 0.013 14.5 0.0 0.031 13.3 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1886) ABC-3 PF00950.12 gi|298675959|ref|YP_003727709.1| - 2.8e-81 272.6 29.0 3.1e-81 272.4 20.1 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|298675959|ref|YP_003727709.1| - 5.6e-12 45.1 19.5 5.6e-12 45.1 13.5 1.7 1 1 1 2 2 2 1 FecCD transport family ABC_tran PF00005.22 gi|298675960|ref|YP_003727710.1| - 9.7e-29 100.4 0.0 1.3e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298675960|ref|YP_003727710.1| - 1.9e-17 64.1 0.3 4.7e-09 36.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|298675960|ref|YP_003727710.1| - 1.6e-07 30.7 0.0 0.0088 15.1 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|298675960|ref|YP_003727710.1| - 3.9e-07 29.5 0.2 2.3e-06 26.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|298675960|ref|YP_003727710.1| - 0.0002 21.5 0.2 0.69 10.1 0.0 2.1 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|298675960|ref|YP_003727710.1| - 0.00025 20.8 0.3 0.0051 16.5 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase AAA_23 PF13476.1 gi|298675960|ref|YP_003727710.1| - 0.00034 21.0 0.1 0.00069 20.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|298675960|ref|YP_003727710.1| - 0.0018 17.2 0.0 0.0056 15.6 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein Pox_A32 PF04665.7 gi|298675960|ref|YP_003727710.1| - 0.0019 17.5 0.0 0.0032 16.7 0.0 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein SbcCD_C PF13558.1 gi|298675960|ref|YP_003727710.1| - 0.0032 17.3 0.1 0.093 12.6 0.0 2.4 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|298675960|ref|YP_003727710.1| - 0.0055 16.8 0.2 0.28 11.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|298675960|ref|YP_003727710.1| - 0.0081 15.6 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|298675960|ref|YP_003727710.1| - 0.0084 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|298675960|ref|YP_003727710.1| - 0.012 15.2 0.4 0.028 14.0 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_10 PF12846.2 gi|298675960|ref|YP_003727710.1| - 0.033 13.6 0.1 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|298675960|ref|YP_003727710.1| - 0.034 14.0 0.1 2.4 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|298675960|ref|YP_003727710.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|298675960|ref|YP_003727710.1| - 0.076 12.5 0.0 0.17 11.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|298675960|ref|YP_003727710.1| - 0.11 11.0 0.2 5.1 5.5 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class TroA PF01297.12 gi|298675961|ref|YP_003727711.1| - 5.2e-69 232.3 0.3 5.9e-69 232.1 0.2 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Aminotran_MocR PF12897.2 gi|298675961|ref|YP_003727711.1| - 0.0077 14.8 0.0 0.014 13.9 0.0 1.4 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DUF948 PF06103.6 gi|298675961|ref|YP_003727711.1| - 0.073 12.9 0.7 0.16 11.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) UPF0081 PF03652.10 gi|298675961|ref|YP_003727711.1| - 0.099 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) SLAM PF06214.6 gi|298675961|ref|YP_003727711.1| - 0.15 11.9 2.1 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 Signaling lymphocytic activation molecule (SLAM) protein Conotoxin PF02950.12 gi|298675961|ref|YP_003727711.1| - 0.18 12.6 0.2 0.41 11.4 0.2 1.6 1 0 0 1 1 1 0 Conotoxin Fe_dep_repr_C PF02742.10 gi|298675962|ref|YP_003727712.1| - 1.1e-13 50.6 0.0 1.8e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|298675962|ref|YP_003727712.1| - 5.1e-13 48.7 0.0 7.3e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|298675962|ref|YP_003727712.1| - 3.2e-08 33.1 0.0 1.3e-06 28.0 0.0 2.2 2 1 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|298675962|ref|YP_003727712.1| - 1.9e-06 28.1 0.0 3.4e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|298675962|ref|YP_003727712.1| - 2.6e-06 27.0 0.0 4.8e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|298675962|ref|YP_003727712.1| - 4e-06 26.0 0.0 0.00023 20.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|298675962|ref|YP_003727712.1| - 1.3e-05 24.8 0.1 5.5e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|298675962|ref|YP_003727712.1| - 0.00018 21.1 0.1 0.00089 18.8 0.0 1.9 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|298675962|ref|YP_003727712.1| - 0.00032 20.7 0.0 0.00053 20.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|298675962|ref|YP_003727712.1| - 0.0005 19.6 0.0 0.0011 18.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|298675962|ref|YP_003727712.1| - 0.00057 19.6 0.0 0.0011 18.6 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|298675962|ref|YP_003727712.1| - 0.00063 19.3 0.0 0.31 10.7 0.0 2.4 2 1 0 2 2 2 2 Homeodomain-like domain HTH_DeoR PF08220.7 gi|298675962|ref|YP_003727712.1| - 0.00077 18.9 0.3 0.34 10.4 0.1 2.2 2 0 0 2 2 2 2 DeoR-like helix-turn-helix domain FeoC PF09012.5 gi|298675962|ref|YP_003727712.1| - 0.0031 17.1 0.1 0.022 14.4 0.0 2.0 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_6 PF01418.12 gi|298675962|ref|YP_003727712.1| - 0.018 14.7 0.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Topoisom_bac PF01131.15 gi|298675962|ref|YP_003727712.1| - 0.02 13.7 0.0 0.024 13.4 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_5 PF01022.15 gi|298675962|ref|YP_003727712.1| - 0.048 13.3 0.0 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|298675962|ref|YP_003727712.1| - 0.07 12.9 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.1 gi|298675962|ref|YP_003727712.1| - 0.08 12.7 0.0 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Kinesin PF00225.18 gi|298675962|ref|YP_003727712.1| - 0.097 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Kinesin motor domain CS PF04969.11 gi|298675963|ref|YP_003727713.1| - 0.0011 19.4 0.1 0.0014 19.0 0.1 1.3 1 0 0 1 1 1 1 CS domain HSP20 PF00011.16 gi|298675963|ref|YP_003727713.1| - 0.0016 18.3 0.1 0.018 14.9 0.0 2.0 2 0 0 2 2 2 1 Hsp20/alpha crystallin family CS PF04969.11 gi|298675964|ref|YP_003727714.1| - 6.6e-05 23.3 0.4 0.00014 22.3 0.1 1.6 1 1 1 2 2 2 1 CS domain HSP20 PF00011.16 gi|298675964|ref|YP_003727714.1| - 0.00035 20.3 0.5 0.0056 16.5 0.3 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|298675964|ref|YP_003727714.1| - 0.0081 15.6 0.0 0.0094 15.4 0.0 1.0 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 Fer4 PF00037.22 gi|298675965|ref|YP_003727715.1| - 1.4e-12 46.6 14.3 7.1e-07 28.5 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675965|ref|YP_003727715.1| - 4.7e-09 36.4 8.1 6e-09 36.1 5.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298675965|ref|YP_003727715.1| - 6.6e-09 35.4 7.5 8.1e-09 35.1 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|298675965|ref|YP_003727715.1| - 2.3e-08 34.1 8.5 2.9e-08 33.8 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675965|ref|YP_003727715.1| - 6.9e-08 32.0 13.3 0.00059 19.5 4.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|298675965|ref|YP_003727715.1| - 1.7e-06 27.6 11.8 0.0058 16.4 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|298675965|ref|YP_003727715.1| - 8.8e-06 26.3 5.6 0.0008 20.1 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|298675965|ref|YP_003727715.1| - 1.2e-05 25.0 12.0 6.6e-05 22.6 8.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298675965|ref|YP_003727715.1| - 3.5e-05 24.0 13.0 0.0022 18.4 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298675965|ref|YP_003727715.1| - 8.1e-05 22.5 8.5 0.00051 20.0 5.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298675965|ref|YP_003727715.1| - 0.00075 19.6 13.4 0.0044 17.2 3.0 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298675965|ref|YP_003727715.1| - 0.002 18.5 11.4 0.0049 17.2 2.9 2.1 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675965|ref|YP_003727715.1| - 0.0036 17.6 9.5 0.013 15.8 2.0 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|298675965|ref|YP_003727715.1| - 0.0052 16.6 3.2 0.0081 16.0 2.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298675965|ref|YP_003727715.1| - 0.013 15.8 11.7 0.036 14.4 8.1 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|298675965|ref|YP_003727715.1| - 0.069 13.7 13.7 0.67 10.5 9.4 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.6 gi|298675966|ref|YP_003727716.1| - 1.5e-24 85.3 0.7 5.5e-24 83.6 0.1 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HypA PF01155.14 gi|298675966|ref|YP_003727716.1| - 0.011 15.3 1.8 0.63 9.7 0.4 2.8 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF106 PF01956.11 gi|298675966|ref|YP_003727716.1| - 0.8 9.2 3.3 1.9 8.0 0.3 2.1 2 0 0 2 2 2 0 Integral membrane protein DUF106 zinc_ribbon_2 PF13240.1 gi|298675966|ref|YP_003727716.1| - 0.87 9.1 5.5 0.55 9.8 1.7 2.4 2 1 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|298675966|ref|YP_003727716.1| - 1.2 8.9 5.0 8.8 6.1 1.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|298675966|ref|YP_003727716.1| - 3.7 7.1 9.3 1.2 8.6 1.7 2.8 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit IFT20 PF14931.1 gi|298675966|ref|YP_003727716.1| - 5.7 6.8 7.4 0.95 9.3 1.2 2.0 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 Lactamase_B PF00753.22 gi|298675967|ref|YP_003727717.1| - 7.9e-14 51.7 0.1 1.2e-13 51.2 0.1 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|298675967|ref|YP_003727717.1| - 9.1e-09 35.1 0.0 1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1847 PF08901.6 gi|298675968|ref|YP_003727718.1| - 1.2e-55 187.3 3.0 1.4e-55 187.0 2.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) DUF3996 PF13161.1 gi|298675968|ref|YP_003727718.1| - 0.023 14.3 0.7 0.93 9.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3996) GxGYxYP PF14323.1 gi|298675968|ref|YP_003727718.1| - 0.024 13.3 0.1 0.029 13.1 0.1 1.1 1 0 0 1 1 1 0 GxGYxY sequence motif in domain of unknown function DUF188 PF02639.9 gi|298675968|ref|YP_003727718.1| - 0.11 12.0 0.0 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized BCR, YaiI/YqxD family COG1671 CbiA PF01656.18 gi|298675969|ref|YP_003727719.1| - 1.1e-25 90.2 0.0 1.4e-25 89.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|298675969|ref|YP_003727719.1| - 1.2e-11 43.6 11.3 1.1e-05 24.8 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298675969|ref|YP_003727719.1| - 2e-08 34.4 4.0 0.00033 20.9 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675969|ref|YP_003727719.1| - 8.1e-07 29.6 4.5 0.0022 18.7 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain AAA_19 PF13245.1 gi|298675969|ref|YP_003727719.1| - 1.8e-06 27.5 0.1 0.022 14.4 0.0 2.3 2 0 0 2 2 2 2 Part of AAA domain Fer4_4 PF12800.2 gi|298675969|ref|YP_003727719.1| - 1.5e-05 24.9 11.3 0.032 14.5 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain ParA PF10609.4 gi|298675969|ref|YP_003727719.1| - 1.6e-05 24.6 2.0 5.5e-05 22.9 0.1 2.4 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_9 PF13187.1 gi|298675969|ref|YP_003727719.1| - 2e-05 24.7 10.3 0.00028 21.0 7.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675969|ref|YP_003727719.1| - 3.3e-05 23.6 9.0 3.3e-05 23.6 6.2 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298675969|ref|YP_003727719.1| - 4.7e-05 23.0 10.1 0.012 15.5 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298675969|ref|YP_003727719.1| - 8.2e-05 22.3 20.0 0.0006 19.5 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298675969|ref|YP_003727719.1| - 0.00015 21.4 14.6 0.059 13.2 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298675969|ref|YP_003727719.1| - 0.00015 22.2 4.2 0.036 14.6 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_NifH PF00142.13 gi|298675969|ref|YP_003727719.1| - 0.0002 20.6 3.7 0.074 12.2 0.1 2.7 2 1 1 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_8 PF13183.1 gi|298675969|ref|YP_003727719.1| - 0.00032 20.6 6.3 0.16 11.9 0.1 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298675969|ref|YP_003727719.1| - 0.0016 18.7 11.8 0.13 12.6 1.8 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain DUF2075 PF09848.4 gi|298675969|ref|YP_003727719.1| - 0.0019 17.2 0.4 0.098 11.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|298675969|ref|YP_003727719.1| - 0.002 18.9 1.7 0.15 12.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|298675969|ref|YP_003727719.1| - 0.0029 16.8 0.7 0.56 9.3 0.3 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_16 PF13191.1 gi|298675969|ref|YP_003727719.1| - 0.0079 16.2 0.2 0.064 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|298675969|ref|YP_003727719.1| - 0.0091 16.1 0.1 0.11 12.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|298675969|ref|YP_003727719.1| - 0.011 14.7 0.9 0.029 13.4 0.6 1.6 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|298675969|ref|YP_003727719.1| - 0.018 14.4 0.5 0.076 12.4 0.4 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|298675969|ref|YP_003727719.1| - 0.018 15.3 0.1 0.94 9.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|298675969|ref|YP_003727719.1| - 0.019 15.2 0.2 0.036 14.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.22 gi|298675969|ref|YP_003727719.1| - 0.021 15.1 0.1 0.16 12.2 0.0 2.2 2 0 0 2 2 2 0 ABC transporter Fer4_3 PF12798.2 gi|298675969|ref|YP_003727719.1| - 0.024 15.1 14.3 0.097 13.2 3.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain RuvB_N PF05496.7 gi|298675969|ref|YP_003727719.1| - 0.029 13.4 0.0 0.54 9.2 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus FTHFS PF01268.14 gi|298675969|ref|YP_003727719.1| - 0.031 12.2 0.0 0.048 11.6 0.0 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_30 PF13604.1 gi|298675969|ref|YP_003727719.1| - 0.032 13.7 0.2 0.15 11.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|298675969|ref|YP_003727719.1| - 0.04 12.3 0.0 0.052 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|298675969|ref|YP_003727719.1| - 0.05 13.8 0.1 0.93 9.7 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|298675969|ref|YP_003727719.1| - 0.074 12.6 0.0 9.1 5.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|298675969|ref|YP_003727719.1| - 0.077 12.1 1.4 0.46 9.5 0.2 2.2 2 0 0 2 2 2 0 KaiC Fer4_13 PF13370.1 gi|298675969|ref|YP_003727719.1| - 0.089 13.1 7.6 2.6 8.5 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_21 PF13304.1 gi|298675969|ref|YP_003727719.1| - 0.11 12.4 1.7 0.16 11.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|298675969|ref|YP_003727719.1| - 0.12 11.2 0.4 0.97 8.2 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain IstB_IS21 PF01695.12 gi|298675969|ref|YP_003727719.1| - 0.15 11.5 0.1 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.1 gi|298675969|ref|YP_003727719.1| - 0.19 11.2 3.2 0.23 11.0 0.6 2.3 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|298675969|ref|YP_003727719.1| - 0.23 11.4 0.2 0.23 11.4 0.1 1.7 2 0 0 2 2 1 0 AAA domain T2SE PF00437.15 gi|298675969|ref|YP_003727719.1| - 0.23 10.3 2.5 0.32 9.8 0.3 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein Fer4_18 PF13746.1 gi|298675969|ref|YP_003727719.1| - 6 7.3 14.3 6 7.3 2.3 2.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain CbiA PF01656.18 gi|298675970|ref|YP_003727720.1| - 3.1e-28 98.5 0.0 3.9e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4 PF00037.22 gi|298675970|ref|YP_003727720.1| - 8e-09 34.7 13.0 3.7e-06 26.3 2.1 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298675970|ref|YP_003727720.1| - 4.5e-06 26.8 9.7 0.0053 17.0 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298675970|ref|YP_003727720.1| - 5.3e-06 26.1 7.4 1.2e-05 25.0 5.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298675970|ref|YP_003727720.1| - 1.1e-05 26.1 9.0 0.0034 18.1 0.4 2.8 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|298675970|ref|YP_003727720.1| - 1.4e-05 25.3 11.0 0.0061 16.9 0.1 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain AAA_26 PF13500.1 gi|298675970|ref|YP_003727720.1| - 5.4e-05 22.8 0.3 0.00081 19.0 0.0 2.4 3 0 0 3 3 2 1 AAA domain Fer4_NifH PF00142.13 gi|298675970|ref|YP_003727720.1| - 8.2e-05 21.9 1.0 0.094 11.8 0.0 2.9 3 0 0 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Fer4_10 PF13237.1 gi|298675970|ref|YP_003727720.1| - 0.00019 21.1 12.2 0.00035 20.2 6.8 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298675970|ref|YP_003727720.1| - 0.00047 20.6 4.5 0.55 10.8 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain AAA_31 PF13614.1 gi|298675970|ref|YP_003727720.1| - 0.00083 19.3 0.0 0.025 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.4 gi|298675970|ref|YP_003727720.1| - 0.00087 19.1 0.2 0.0034 17.2 0.0 2.1 2 0 0 2 2 2 1 ParA/MinD ATPase like Fer4_17 PF13534.1 gi|298675970|ref|YP_003727720.1| - 0.0012 19.1 5.3 0.11 12.9 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain ArsA_ATPase PF02374.10 gi|298675970|ref|YP_003727720.1| - 0.0022 17.0 0.1 0.0044 16.1 0.1 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_6 PF12837.2 gi|298675970|ref|YP_003727720.1| - 0.0077 16.0 3.7 0.0077 16.0 2.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain AAA_17 PF13207.1 gi|298675970|ref|YP_003727720.1| - 0.012 16.4 0.0 0.052 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain MipZ PF09140.6 gi|298675970|ref|YP_003727720.1| - 0.028 13.4 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ Fer4_18 PF13746.1 gi|298675970|ref|YP_003727720.1| - 0.035 14.5 9.1 0.37 11.2 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298675970|ref|YP_003727720.1| - 0.038 14.5 22.0 0.054 14.0 5.4 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298675970|ref|YP_003727720.1| - 0.039 13.9 13.0 0.46 10.5 7.9 2.6 2 1 1 3 3 2 0 4Fe-4S dicluster domain AAA_19 PF13245.1 gi|298675970|ref|YP_003727720.1| - 0.071 12.8 0.0 2.9 7.7 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain Fer4_2 PF12797.2 gi|298675970|ref|YP_003727720.1| - 0.073 13.0 1.4 0.073 13.0 1.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain AAA_18 PF13238.1 gi|298675970|ref|YP_003727720.1| - 0.077 13.2 0.0 0.76 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|298675970|ref|YP_003727720.1| - 0.096 11.9 0.1 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Fer4_11 PF13247.1 gi|298675970|ref|YP_003727720.1| - 0.12 12.2 2.2 0.31 10.9 1.3 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_25 PF13481.1 gi|298675970|ref|YP_003727720.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Fer4_4 PF12800.2 gi|298675970|ref|YP_003727720.1| - 0.26 11.7 18.1 0.17 12.3 2.5 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|298675970|ref|YP_003727720.1| - 1.5 9.2 7.8 10 6.5 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitro_FeMo-Co PF02579.12 gi|298675971|ref|YP_003727721.1| - 2.1e-21 75.8 0.0 2.9e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Saccharop_dh PF03435.13 gi|298675971|ref|YP_003727721.1| - 0.0029 16.6 0.0 0.003 16.5 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase DUF427 PF04248.7 gi|298675971|ref|YP_003727721.1| - 0.083 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF427) Nitro_FeMo-Co PF02579.12 gi|298675972|ref|YP_003727722.1| - 1e-22 79.9 0.0 1.2e-22 79.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor PA14_2 PF10528.4 gi|298675972|ref|YP_003727722.1| - 0.0087 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 GLEYA domain DUF134 PF02001.11 gi|298675973|ref|YP_003727723.1| - 4.7e-22 77.8 0.1 5.3e-22 77.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|298675973|ref|YP_003727723.1| - 2e-05 23.9 0.1 2.7e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|298675973|ref|YP_003727723.1| - 0.00061 19.0 0.3 0.00092 18.4 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Latrotoxin_C PF15658.1 gi|298675973|ref|YP_003727723.1| - 0.0049 16.6 0.1 0.0057 16.4 0.1 1.0 1 0 0 1 1 1 1 Latrotoxin C-terminal domain HTH_10 PF04967.7 gi|298675973|ref|YP_003727723.1| - 0.0054 16.2 0.3 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_ECF PF07638.6 gi|298675973|ref|YP_003727723.1| - 0.0073 15.9 0.6 0.0082 15.8 0.4 1.1 1 0 0 1 1 1 1 ECF sigma factor HTH_11 PF08279.7 gi|298675973|ref|YP_003727723.1| - 0.013 15.1 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_3 PF01381.17 gi|298675973|ref|YP_003727723.1| - 0.016 15.0 0.2 0.025 14.4 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_1 PF00126.22 gi|298675973|ref|YP_003727723.1| - 0.029 14.1 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|298675973|ref|YP_003727723.1| - 0.044 13.4 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain BsuBI_PstI_RE PF06616.6 gi|298675973|ref|YP_003727723.1| - 0.098 11.4 0.1 0.1 11.3 0.1 1.0 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease C-terminus HTH_17 PF12728.2 gi|298675973|ref|YP_003727723.1| - 0.14 12.4 0.3 0.48 10.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain ParA PF10609.4 gi|298675974|ref|YP_003727724.1| - 2.4e-32 110.6 0.1 4.4e-32 109.8 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|298675974|ref|YP_003727724.1| - 2.9e-21 75.7 0.0 4.2e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|298675974|ref|YP_003727724.1| - 3.8e-10 39.9 0.0 3.7e-08 33.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|298675974|ref|YP_003727724.1| - 1.5e-08 34.0 0.0 2.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|298675974|ref|YP_003727724.1| - 4.6e-08 32.4 0.1 2.3e-07 30.1 0.0 2.0 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|298675974|ref|YP_003727724.1| - 0.00028 20.5 0.2 0.022 14.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|298675974|ref|YP_003727724.1| - 0.0005 19.7 0.0 0.00082 19.0 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase MobB PF03205.9 gi|298675974|ref|YP_003727724.1| - 0.00054 19.6 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|298675974|ref|YP_003727724.1| - 0.00083 18.2 1.3 0.0024 16.7 0.1 2.0 2 0 0 2 2 2 1 ArgK protein Fer4_NifH PF00142.13 gi|298675974|ref|YP_003727724.1| - 0.0018 17.5 0.0 0.027 13.6 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF258 PF03193.11 gi|298675974|ref|YP_003727724.1| - 0.0029 16.7 0.1 0.0043 16.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 VirC1 PF07015.6 gi|298675974|ref|YP_003727724.1| - 0.0031 16.6 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein SRP54 PF00448.17 gi|298675974|ref|YP_003727724.1| - 0.0045 16.4 0.0 0.0076 15.7 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|298675974|ref|YP_003727724.1| - 0.0046 16.3 0.1 0.059 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|298675974|ref|YP_003727724.1| - 0.005 16.3 0.0 0.0072 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|298675974|ref|YP_003727724.1| - 0.015 16.1 0.0 0.028 15.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|298675974|ref|YP_003727724.1| - 0.039 13.6 0.2 0.084 12.5 0.0 1.6 2 0 0 2 2 1 0 NTPase RNA_helicase PF00910.17 gi|298675974|ref|YP_003727724.1| - 0.047 13.8 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|298675974|ref|YP_003727724.1| - 0.048 13.0 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|298675974|ref|YP_003727724.1| - 0.054 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|298675974|ref|YP_003727724.1| - 0.055 12.6 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|298675974|ref|YP_003727724.1| - 0.078 12.7 0.6 1.4 8.7 0.0 2.5 2 1 0 2 2 2 0 Part of AAA domain NB-ARC PF00931.17 gi|298675974|ref|YP_003727724.1| - 0.11 11.3 0.6 0.17 10.7 0.4 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.1 gi|298675974|ref|YP_003727724.1| - 0.11 12.6 0.1 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|298675974|ref|YP_003727724.1| - 0.12 12.6 0.1 0.2 11.9 0.1 1.4 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.7 gi|298675974|ref|YP_003727724.1| - 0.12 12.0 0.2 0.19 11.3 0.2 1.2 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|298675974|ref|YP_003727724.1| - 0.12 12.1 0.3 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 YhjQ PF06564.7 gi|298675974|ref|YP_003727724.1| - 0.15 11.4 0.1 0.85 8.9 0.1 1.9 2 0 0 2 2 2 0 YhjQ protein LpxK PF02606.9 gi|298675974|ref|YP_003727724.1| - 0.16 10.8 0.1 0.52 9.2 0.0 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase DUF169 PF02596.10 gi|298675975|ref|YP_003727725.1| - 7.3e-62 208.5 0.0 8.2e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Peptidase_M24 PF00557.19 gi|298675976|ref|YP_003727726.1| - 2.2e-43 148.2 0.0 2.6e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|298675977|ref|YP_003727727.1| - 4.1e-43 147.3 0.0 5.5e-43 146.9 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|298675977|ref|YP_003727727.1| - 1.1e-07 32.4 0.0 1.8e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Lipoprotein_10 PF03202.8 gi|298675977|ref|YP_003727727.1| - 0.0088 16.0 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 Putative mycoplasma lipoprotein, C-terminal region AMP_N PF05195.11 gi|298675977|ref|YP_003727727.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Aminopeptidase P, N-terminal domain PAS_9 PF13426.1 gi|298675979|ref|YP_003727729.1| - 2.3e-42 143.5 2.1 8e-12 45.4 0.1 5.0 5 0 0 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|298675979|ref|YP_003727729.1| - 2.3e-41 140.2 0.0 9.8e-20 70.6 0.0 4.4 4 0 0 4 4 4 3 PAS fold HisKA_2 PF07568.7 gi|298675979|ref|YP_003727729.1| - 8.9e-31 105.5 7.6 1.6e-30 104.7 2.3 3.3 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.19 gi|298675979|ref|YP_003727729.1| - 6e-30 103.3 0.0 9.9e-08 31.7 0.0 4.7 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.6 gi|298675979|ref|YP_003727729.1| - 3.3e-23 81.5 0.1 1.7e-14 53.6 0.0 5.0 5 0 0 5 5 5 2 PAS fold PAS_8 PF13188.1 gi|298675979|ref|YP_003727729.1| - 7.3e-14 51.0 0.1 0.00027 20.6 0.0 4.4 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|298675979|ref|YP_003727729.1| - 4e-11 42.6 0.1 1.3e-10 41.0 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|298675979|ref|YP_003727729.1| - 1.5e-07 31.6 5.8 0.02 15.1 0.0 4.8 5 1 0 5 5 5 2 PAS domain HWE_HK PF07536.9 gi|298675979|ref|YP_003727729.1| - 3.6e-07 30.5 0.1 1.3e-06 28.7 0.1 2.0 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298675979|ref|YP_003727729.1| - 4.8e-05 23.1 0.0 9.2e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SEO_N PF14576.1 gi|298675979|ref|YP_003727729.1| - 0.0021 17.3 2.1 0.0047 16.2 1.5 1.6 1 0 0 1 1 1 1 Sieve element occlusion N-terminus HATPase_c_3 PF13589.1 gi|298675979|ref|YP_003727729.1| - 0.004 16.8 3.0 0.0054 16.3 0.2 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3 PF14827.1 gi|298675979|ref|YP_003727729.1| - 0.11 12.4 0.0 5.4 6.9 0.0 2.8 2 0 0 2 2 2 0 Sensory domain of two-component sensor kinase tRNA_deacylase PF04414.7 gi|298675980|ref|YP_003727730.1| - 9.7e-68 227.4 0.1 2.6e-67 226.0 0.0 1.7 2 0 0 2 2 2 1 D-aminoacyl-tRNA deacylase DUF438 PF04282.8 gi|298675980|ref|YP_003727730.1| - 0.084 12.6 0.5 1.5 8.6 0.1 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF438) Tubulin PF00091.20 gi|298675981|ref|YP_003727731.1| - 2.8e-34 118.8 0.5 8.1e-34 117.3 0.3 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|298675981|ref|YP_003727731.1| - 4.8e-34 116.3 0.6 1.4e-33 114.7 0.4 1.9 1 0 0 1 1 1 1 FtsZ family, C-terminal domain SIS_2 PF13580.1 gi|298675981|ref|YP_003727731.1| - 0.045 13.4 0.4 4.1 7.1 0.0 2.5 2 0 0 2 2 2 0 SIS domain Tubulin_2 PF13809.1 gi|298675981|ref|YP_003727731.1| - 1.9 7.3 6.1 0.24 10.2 0.7 1.7 1 1 0 2 2 2 0 Tubulin like SecE PF00584.15 gi|298675982|ref|YP_003727732.1| - 0.058 12.9 0.0 0.064 12.8 0.0 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.8 gi|298675983|ref|YP_003727733.1| - 9.2e-24 83.0 0.2 1.4e-23 82.4 0.2 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|298675983|ref|YP_003727733.1| - 3.3e-06 26.6 1.3 3.7e-05 23.2 0.2 2.6 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|298675983|ref|YP_003727733.1| - 0.0011 19.1 0.2 0.0041 17.3 0.0 2.1 2 1 0 2 2 2 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|298675984|ref|YP_003727734.1| - 1.5e-25 88.3 3.6 1.9e-25 88.0 1.1 1.9 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|298675984|ref|YP_003727734.1| - 9.3e-19 67.3 0.1 9.3e-19 67.3 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain YonK PF09642.5 gi|298675984|ref|YP_003727734.1| - 0.001 18.7 0.9 0.007 16.0 0.0 2.2 2 0 0 2 2 2 1 YonK protein DUF1071 PF06378.6 gi|298675984|ref|YP_003727734.1| - 0.092 11.8 0.5 0.28 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1071) Ribosomal_L1 PF00687.16 gi|298675985|ref|YP_003727735.1| - 1.4e-51 174.9 0.2 1.6e-51 174.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|298675986|ref|YP_003727736.1| - 2e-25 88.6 0.3 3.7e-25 87.7 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|298675986|ref|YP_003727736.1| - 2.3e-09 37.5 2.0 6.1e-09 36.1 1.4 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein HSP90 PF00183.13 gi|298675986|ref|YP_003727736.1| - 4.2 5.6 9.3 0.78 8.0 0.1 2.2 2 0 0 2 2 2 0 Hsp90 protein Ribosomal_60s PF00428.14 gi|298675987|ref|YP_003727737.1| - 3.1e-18 65.9 16.7 3.6e-18 65.7 11.6 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF348 PF03990.9 gi|298675987|ref|YP_003727737.1| - 0.0023 17.4 0.5 0.004 16.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF348) HD PF01966.17 gi|298675987|ref|YP_003727737.1| - 0.051 13.5 0.3 0.061 13.3 0.2 1.3 1 1 0 1 1 1 0 HD domain LEA_3 PF03242.8 gi|298675987|ref|YP_003727737.1| - 0.12 12.6 0.8 0.17 12.1 0.5 1.2 1 0 0 1 1 1 0 Late embryogenesis abundant protein Sigma70_ner PF04546.8 gi|298675987|ref|YP_003727737.1| - 1.2 8.7 4.7 1.4 8.4 3.2 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region Myc_N PF01056.13 gi|298675987|ref|YP_003727737.1| - 1.4 7.9 4.2 1.6 7.7 2.9 1.1 1 0 0 1 1 1 0 Myc amino-terminal region Fn_bind PF02986.9 gi|298675987|ref|YP_003727737.1| - 2.9 7.4 0.0 2.9 7.4 0.0 2.7 3 1 0 3 3 3 0 Fibronectin binding repeat HIT PF01230.18 gi|298675988|ref|YP_003727738.1| - 4e-30 104.2 0.0 5e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|298675988|ref|YP_003727738.1| - 1.1e-16 61.0 0.0 1.5e-16 60.6 0.0 1.2 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|298675988|ref|YP_003727738.1| - 0.025 14.2 0.1 0.044 13.4 0.1 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 TPR_1 PF00515.23 gi|298675989|ref|YP_003727739.1| - 2.3e-95 308.6 41.0 2.7e-10 39.4 0.0 12.1 12 0 0 12 12 12 12 Tetratricopeptide repeat TPR_11 PF13414.1 gi|298675989|ref|YP_003727739.1| - 3.1e-83 273.4 48.2 1.6e-16 59.6 0.9 7.4 2 1 6 9 9 9 9 TPR repeat TPR_2 PF07719.12 gi|298675989|ref|YP_003727739.1| - 8.6e-74 237.6 36.0 2.5e-07 30.0 0.0 12.1 12 0 0 12 12 12 11 Tetratricopeptide repeat TPR_8 PF13181.1 gi|298675989|ref|YP_003727739.1| - 3.9e-56 182.7 52.5 2.3e-06 26.9 0.0 12.2 11 1 1 12 12 12 12 Tetratricopeptide repeat TPR_17 PF13431.1 gi|298675989|ref|YP_003727739.1| - 1.8e-53 174.3 30.9 2.6e-05 24.0 0.1 11.4 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|298675989|ref|YP_003727739.1| - 1.3e-51 172.3 11.5 3e-07 30.9 0.0 7.0 3 2 6 9 9 9 9 Tetratricopeptide repeat TPR_12 PF13424.1 gi|298675989|ref|YP_003727739.1| - 1.4e-51 172.3 44.5 6.5e-10 38.8 0.2 7.6 2 1 8 10 10 10 10 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298675989|ref|YP_003727739.1| - 2.9e-45 148.5 1.9 0.0019 18.6 0.0 11.2 1 1 10 11 11 11 10 Tetratricopeptide repeat TPR_19 PF14559.1 gi|298675989|ref|YP_003727739.1| - 1.6e-34 118.0 19.2 1.5e-05 25.2 0.1 7.0 6 1 1 7 7 7 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|298675989|ref|YP_003727739.1| - 5.5e-33 112.6 0.0 1.4e-05 24.8 0.0 7.0 1 1 7 9 9 9 9 Tetratricopeptide repeat Apc3 PF12895.2 gi|298675989|ref|YP_003727739.1| - 5.4e-20 71.3 20.9 5e-06 26.5 0.2 5.4 2 2 2 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.1 gi|298675989|ref|YP_003727739.1| - 3.6e-19 66.9 15.0 0.14 12.0 0.0 10.8 12 0 0 12 12 11 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|298675989|ref|YP_003727739.1| - 4e-19 67.7 23.1 0.52 10.8 0.1 11.6 12 0 0 12 12 12 4 Tetratricopeptide repeat TPR_15 PF13429.1 gi|298675989|ref|YP_003727739.1| - 1.7e-12 47.0 11.4 0.0006 18.9 1.1 4.9 2 1 2 4 4 4 4 Tetratricopeptide repeat NARP1 PF12569.3 gi|298675989|ref|YP_003727739.1| - 4.6e-11 42.1 13.9 0.00038 19.3 0.1 5.5 1 1 3 5 5 5 3 NMDA receptor-regulated protein 1 DUF3856 PF12968.2 gi|298675989|ref|YP_003727739.1| - 1e-10 41.5 10.0 0.058 13.2 0.1 7.3 1 1 8 9 9 9 4 Domain of Unknown Function (DUF3856) MIT PF04212.13 gi|298675989|ref|YP_003727739.1| - 1.1e-09 37.9 28.7 0.19 11.6 0.1 10.5 9 3 1 11 11 10 3 MIT (microtubule interacting and transport) domain Fis1_TPR_C PF14853.1 gi|298675989|ref|YP_003727739.1| - 2.8e-08 33.4 16.9 0.5 10.2 0.0 7.9 8 1 1 9 9 8 3 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|298675989|ref|YP_003727739.1| - 3e-07 30.1 13.0 1.8 8.6 0.0 8.9 10 0 0 10 10 10 1 Tetratricopeptide repeat ChAPs PF09295.5 gi|298675989|ref|YP_003727739.1| - 1.9e-05 23.6 8.6 0.0026 16.6 0.5 4.4 1 1 1 3 3 3 1 ChAPs (Chs5p-Arf1p-binding proteins) PPTA PF01239.17 gi|298675989|ref|YP_003727739.1| - 0.00019 20.6 7.6 0.43 10.0 0.1 5.4 5 0 0 5 5 5 2 Protein prenyltransferase alpha subunit repeat FAD_binding_4 PF01565.18 gi|298675989|ref|YP_003727739.1| - 0.00025 20.5 0.0 11 5.4 0.0 5.6 2 2 3 6 6 6 0 FAD binding domain Apc5 PF12862.2 gi|298675989|ref|YP_003727739.1| - 0.00032 20.4 6.8 3.3 7.6 0.0 5.6 3 2 2 6 6 5 1 Anaphase-promoting complex subunit 5 BTAD PF03704.12 gi|298675989|ref|YP_003727739.1| - 0.0014 18.9 1.6 20 5.4 0.0 4.6 3 3 2 5 5 5 0 Bacterial transcriptional activator domain TPR_5 PF12688.2 gi|298675989|ref|YP_003727739.1| - 0.0018 18.3 1.4 0.91 9.5 0.0 5.0 2 2 2 4 4 4 1 Tetratrico peptide repeat TPR_20 PF14561.1 gi|298675989|ref|YP_003727739.1| - 0.0022 18.0 3.9 2 8.5 0.1 4.5 2 2 1 5 5 5 1 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|298675989|ref|YP_003727739.1| - 0.017 14.2 8.2 0.1 11.7 0.7 3.9 3 2 1 4 4 4 0 Coatomer epsilon subunit SHNi-TPR PF10516.4 gi|298675989|ref|YP_003727739.1| - 0.02 14.1 15.5 5.9 6.2 0.1 6.9 7 0 0 7 7 7 0 SHNi-TPR MeMO_Hyd_G PF02964.11 gi|298675989|ref|YP_003727739.1| - 0.056 13.3 2.9 33 4.3 0.0 3.9 4 0 0 4 4 4 0 Methane monooxygenase, hydrolase gamma chain NRDE-2 PF08424.5 gi|298675989|ref|YP_003727739.1| - 0.78 8.5 13.0 0.19 10.5 1.4 3.9 2 1 2 4 4 4 0 NRDE-2, necessary for RNA interference TPR_21 PF09976.4 gi|298675989|ref|YP_003727739.1| - 4 7.3 11.6 9.7 6.1 0.2 5.0 3 3 0 5 5 5 0 Tetratricopeptide repeat Radical_SAM PF04055.16 gi|298675990|ref|YP_003727740.1| - 9.9e-18 64.8 0.3 2.4e-17 63.5 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|298675990|ref|YP_003727740.1| - 7.6e-05 22.8 0.0 0.00029 20.9 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|298675990|ref|YP_003727740.1| - 0.024 14.6 0.4 0.12 12.4 0.1 2.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain SAM_adeno_trans PF01887.11 gi|298675991|ref|YP_003727741.1| - 1.2e-90 303.0 0.6 1.4e-90 302.8 0.4 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase ThiC PF01964.13 gi|298675992|ref|YP_003727742.1| - 5.4e-180 598.4 0.5 6.1e-180 598.2 0.3 1.0 1 0 0 1 1 1 1 ThiC family Pyr_excise PF03013.9 gi|298675993|ref|YP_003727743.1| - 1.1e-14 54.2 0.8 1.6e-14 53.7 0.5 1.3 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase XFP PF03894.10 gi|298675993|ref|YP_003727743.1| - 0.1 12.1 0.1 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase KicB PF03882.9 gi|298675993|ref|YP_003727743.1| - 0.12 11.0 0.0 0.13 10.8 0.0 1.0 1 0 0 1 1 1 0 KicB killing factor Glycos_transf_2 PF00535.21 gi|298675994|ref|YP_003727744.1| - 1.1e-18 67.4 0.0 1.7e-18 66.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|298675994|ref|YP_003727744.1| - 7.5e-09 35.7 0.0 1e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|298675994|ref|YP_003727744.1| - 0.017 15.4 0.0 0.031 14.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 TBP PF00352.16 gi|298675995|ref|YP_003727745.1| - 1.4e-64 213.4 0.1 3.9e-31 106.2 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|298675995|ref|YP_003727745.1| - 6.4e-06 26.1 0.0 0.11 12.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF3252 PF11623.3 gi|298675995|ref|YP_003727745.1| - 0.0034 16.7 0.0 2.8 7.3 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3252) MTH865 PF07747.6 gi|298675996|ref|YP_003727746.1| - 3e-31 106.8 0.3 3.3e-31 106.7 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_5 PF01022.15 gi|298675997|ref|YP_003727747.1| - 2.9e-06 26.8 0.0 6.1e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|298675997|ref|YP_003727747.1| - 1.4e-05 24.8 0.5 4.1e-05 23.3 0.4 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|298675997|ref|YP_003727747.1| - 0.00059 19.5 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|298675997|ref|YP_003727747.1| - 0.00062 19.7 0.1 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|298675997|ref|YP_003727747.1| - 0.0083 15.4 0.1 0.016 14.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GlutR_dimer PF00745.15 gi|298675997|ref|YP_003727747.1| - 0.032 14.1 0.1 0.1 12.5 0.0 1.9 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain Paramyxo_P PF01806.12 gi|298675997|ref|YP_003727747.1| - 0.084 12.1 5.2 0.097 11.9 2.8 1.9 1 1 0 1 1 1 0 Paramyxovirinae P phosphoprotein C-terminal region RNase_E_G PF10150.4 gi|298675997|ref|YP_003727747.1| - 0.19 10.9 3.2 0.15 11.2 1.0 1.6 1 1 1 2 2 2 0 Ribonuclease E/G family MutS_III PF05192.13 gi|298675997|ref|YP_003727747.1| - 0.53 10.0 3.1 1.5 8.5 2.1 1.8 1 1 0 1 1 1 0 MutS domain III OSCP PF00213.13 gi|298675997|ref|YP_003727747.1| - 1.1 9.0 5.1 0.61 9.9 0.6 2.3 1 1 1 2 2 2 0 ATP synthase delta (OSCP) subunit DUF4441 PF14536.1 gi|298675997|ref|YP_003727747.1| - 6 6.8 21.5 0.053 13.4 5.3 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4441) DUF387 PF04079.11 gi|298675998|ref|YP_003727748.1| - 7.8e-40 135.8 0.3 1.7e-38 131.4 0.0 2.3 2 0 0 2 2 2 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|298675998|ref|YP_003727748.1| - 0.078 12.7 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ScpA_ScpB PF02616.9 gi|298675999|ref|YP_003727749.1| - 5.7e-39 134.1 8.1 1.1e-38 133.2 5.6 1.4 1 1 0 1 1 1 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|298675999|ref|YP_003727749.1| - 0.025 13.7 0.0 0.049 12.8 0.0 1.6 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein FAM176 PF14851.1 gi|298675999|ref|YP_003727749.1| - 0.85 9.2 12.3 0.16 11.6 1.2 2.3 1 1 1 2 2 2 0 FAM176 family SMC_N PF02463.14 gi|298676000|ref|YP_003727750.1| - 5e-43 146.8 108.9 1.7e-40 138.6 75.5 4.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|298676000|ref|YP_003727750.1| - 2.2e-31 108.3 3.6 3.2e-31 107.7 0.0 3.1 3 0 0 3 3 3 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|298676000|ref|YP_003727750.1| - 1.7e-14 54.5 31.0 1.7e-14 54.5 21.5 8.3 1 1 2 4 4 1 1 AAA domain IncA PF04156.9 gi|298676000|ref|YP_003727750.1| - 1.2e-09 38.0 162.3 0.042 13.4 19.9 7.4 2 2 3 5 5 4 4 IncA protein Reo_sigmaC PF04582.7 gi|298676000|ref|YP_003727750.1| - 7.7e-09 35.1 47.9 0.008 15.4 2.9 6.0 2 2 4 6 6 6 5 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|298676000|ref|YP_003727750.1| - 5.8e-07 29.4 166.9 0.074 12.9 18.5 8.3 3 2 4 8 8 7 7 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_29 PF13555.1 gi|298676000|ref|YP_003727750.1| - 2.9e-06 26.7 0.0 6.3e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|298676000|ref|YP_003727750.1| - 3.7e-06 25.7 153.5 0.0044 15.5 25.0 6.9 3 2 4 7 7 7 6 AAA domain DUF3584 PF12128.3 gi|298676000|ref|YP_003727750.1| - 6.4e-06 23.8 125.8 0.0006 17.3 39.1 3.2 2 1 0 2 2 2 2 Protein of unknown function (DUF3584) WEMBL PF05701.6 gi|298676000|ref|YP_003727750.1| - 1e-05 24.2 43.3 1e-05 24.2 30.0 4.4 2 2 1 3 3 3 1 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|298676000|ref|YP_003727750.1| - 1.2e-05 24.2 155.4 0.0057 15.3 16.5 7.1 2 2 5 7 7 7 4 Spc7 kinetochore protein MscS_porin PF12795.2 gi|298676000|ref|YP_003727750.1| - 0.00014 21.2 118.3 0.00017 20.9 11.1 6.6 2 2 3 6 6 6 2 Mechanosensitive ion channel porin domain ATG16 PF08614.6 gi|298676000|ref|YP_003727750.1| - 0.0013 18.5 23.8 0.0013 18.5 16.5 8.7 2 2 7 9 9 9 4 Autophagy protein 16 (ATG16) Filament PF00038.16 gi|298676000|ref|YP_003727750.1| - 0.0019 17.7 140.0 0.14 11.6 10.2 7.6 2 2 5 7 7 7 3 Intermediate filament protein Rab5-bind PF09311.6 gi|298676000|ref|YP_003727750.1| - 0.0021 18.0 23.3 0.0021 18.0 16.1 6.7 2 2 4 6 6 3 1 Rabaptin-like protein AAA_21 PF13304.1 gi|298676000|ref|YP_003727750.1| - 0.0027 17.7 8.8 0.0027 17.7 6.1 5.7 2 2 1 3 3 2 1 AAA domain Laminin_I PF06008.9 gi|298676000|ref|YP_003727750.1| - 0.024 13.9 119.0 0.15 11.3 12.6 7.6 2 2 3 5 5 5 0 Laminin Domain I TPR_MLP1_2 PF07926.7 gi|298676000|ref|YP_003727750.1| - 0.029 14.1 147.4 0.017 14.8 9.7 7.6 3 3 3 7 7 7 0 TPR/MLP1/MLP2-like protein EzrA PF06160.7 gi|298676000|ref|YP_003727750.1| - 0.051 11.7 131.2 0.0075 14.5 10.8 7.1 2 2 4 6 6 6 0 Septation ring formation regulator, EzrA APG6 PF04111.7 gi|298676000|ref|YP_003727750.1| - 0.073 12.1 156.8 0.13 11.2 16.0 7.5 2 2 5 7 7 7 0 Autophagy protein Apg6 FliJ PF02050.11 gi|298676000|ref|YP_003727750.1| - 0.13 12.2 112.1 0.12 12.4 5.0 9.4 4 2 5 9 9 9 0 Flagellar FliJ protein TBPIP PF07106.8 gi|298676000|ref|YP_003727750.1| - 0.18 11.3 146.0 0.16 11.5 6.3 9.0 2 2 5 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|298676000|ref|YP_003727750.1| - 0.58 10.4 73.4 0.11 12.7 2.6 10.3 4 2 5 9 9 9 0 Nucleopolyhedrovirus P10 protein Myosin_tail_1 PF01576.14 gi|298676000|ref|YP_003727750.1| - 1.6 6.3 170.4 0.032 11.9 55.2 3.3 2 2 0 2 2 2 0 Myosin tail DUF869 PF05911.6 gi|298676000|ref|YP_003727750.1| - 2.2 6.3 142.1 0.31 9.2 23.3 5.5 2 2 1 4 4 4 0 Plant protein of unknown function (DUF869) Cast PF10174.4 gi|298676000|ref|YP_003727750.1| - 2.7 5.9 157.4 0.12 10.3 16.7 4.9 2 2 1 4 4 4 0 RIM-binding protein of the cytomatrix active zone DUF4200 PF13863.1 gi|298676000|ref|YP_003727750.1| - 3.7 7.4 162.5 0.11 12.4 16.0 9.3 4 2 3 8 8 8 0 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|298676000|ref|YP_003727750.1| - 5.7 6.6 110.6 0.013 15.2 7.4 8.6 3 2 5 9 9 9 0 Laminin Domain II Mnd1 PF03962.10 gi|298676000|ref|YP_003727750.1| - 7.2 6.2 137.8 0.23 11.0 11.8 9.9 2 2 8 10 10 10 0 Mnd1 family AAA_27 PF13514.1 gi|298676001|ref|YP_003727751.1| - 0.006 14.3 3.4 0.0089 13.7 2.3 1.4 1 1 0 1 1 1 1 AAA domain ApoC-I PF04691.7 gi|298676001|ref|YP_003727751.1| - 0.05 13.3 0.4 0.05 13.3 0.3 2.1 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) SlyX PF04102.7 gi|298676001|ref|YP_003727751.1| - 0.071 13.4 9.8 0.32 11.3 0.3 3.0 3 0 0 3 3 3 0 SlyX P-mevalo_kinase PF04275.9 gi|298676001|ref|YP_003727751.1| - 0.099 12.3 0.5 0.19 11.4 0.3 1.5 1 0 0 1 1 1 0 Phosphomevalonate kinase Herpes_U30 PF04523.8 gi|298676001|ref|YP_003727751.1| - 0.15 9.5 0.7 0.2 9.0 0.5 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 V_ATPase_I PF01496.14 gi|298676001|ref|YP_003727751.1| - 0.2 9.4 13.5 0.36 8.6 9.3 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Spectrin PF00435.16 gi|298676001|ref|YP_003727751.1| - 0.27 11.5 7.6 0.43 10.8 4.5 1.9 1 1 1 2 2 2 0 Spectrin repeat DUF1974 PF09317.6 gi|298676001|ref|YP_003727751.1| - 0.3 10.4 2.3 0.45 9.8 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1974) DUF745 PF05335.8 gi|298676001|ref|YP_003727751.1| - 0.5 9.8 4.8 1 8.8 3.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Prominin PF05478.6 gi|298676001|ref|YP_003727751.1| - 0.54 7.7 3.1 0.67 7.4 2.2 1.2 1 0 0 1 1 1 0 Prominin CDK5_activator PF03261.10 gi|298676001|ref|YP_003727751.1| - 0.84 8.9 8.7 0.69 9.1 5.3 1.4 1 1 0 1 1 1 0 Cyclin-dependent kinase 5 activator protein DUF2203 PF09969.4 gi|298676001|ref|YP_003727751.1| - 0.96 9.6 9.6 0.11 12.6 2.7 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF1845 PF08900.6 gi|298676001|ref|YP_003727751.1| - 0.97 8.6 6.0 2.3 7.4 0.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1845) Laminin_II PF06009.7 gi|298676001|ref|YP_003727751.1| - 1.1 8.9 10.3 6.1 6.6 7.2 2.1 1 1 0 1 1 1 0 Laminin Domain II Sec2p PF06428.6 gi|298676001|ref|YP_003727751.1| - 1.4 8.8 11.0 0.92 9.3 2.0 2.6 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Allexi_40kDa PF05549.6 gi|298676001|ref|YP_003727751.1| - 1.5 8.0 4.3 2.9 7.1 3.0 1.4 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF1664 PF07889.7 gi|298676001|ref|YP_003727751.1| - 2 8.2 7.4 4.7 7.0 5.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) APG6 PF04111.7 gi|298676001|ref|YP_003727751.1| - 3.2 6.7 16.7 0.059 12.4 6.6 1.7 2 0 0 2 2 2 0 Autophagy protein Apg6 Prefoldin_2 PF01920.15 gi|298676001|ref|YP_003727751.1| - 3.2 7.5 18.8 0.77 9.5 2.6 2.8 3 0 0 3 3 3 0 Prefoldin subunit Med9 PF07544.8 gi|298676001|ref|YP_003727751.1| - 4 7.2 11.8 7.7 6.3 1.0 2.9 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 XhlA PF10779.4 gi|298676001|ref|YP_003727751.1| - 4.1 7.4 14.7 11 5.9 0.9 3.0 1 1 2 3 3 3 0 Haemolysin XhlA Sugarporin_N PF11471.3 gi|298676001|ref|YP_003727751.1| - 4.4 7.0 7.8 0.42 10.2 0.7 2.4 2 1 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Fib_alpha PF08702.5 gi|298676001|ref|YP_003727751.1| - 4.5 7.3 15.8 0.49 10.5 5.1 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|298676001|ref|YP_003727751.1| - 4.5 7.5 10.5 0.56 10.4 0.3 2.6 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|298676001|ref|YP_003727751.1| - 5.1 6.9 7.9 15 5.4 5.5 1.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF641 PF04859.7 gi|298676001|ref|YP_003727751.1| - 5.3 6.8 9.1 0.83 9.4 0.9 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF4635 PF15466.1 gi|298676001|ref|YP_003727751.1| - 8.9 5.6 10.7 6 6.1 0.9 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4635) Atg14 PF10186.4 gi|298676001|ref|YP_003727751.1| - 9.2 5.1 11.6 0.56 9.1 4.4 1.6 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_21 PF13304.1 gi|298676002|ref|YP_003727752.1| - 6.3e-11 42.7 13.2 1.4e-08 35.0 4.8 4.7 3 2 0 4 4 3 2 AAA domain SMC_N PF02463.14 gi|298676002|ref|YP_003727752.1| - 6.3e-10 38.6 0.6 6.3e-10 38.6 0.4 3.4 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|298676002|ref|YP_003727752.1| - 4.7e-07 30.3 64.7 4.7e-07 30.3 44.9 6.2 1 1 2 3 3 2 1 AAA domain AAA_29 PF13555.1 gi|298676002|ref|YP_003727752.1| - 6.2e-05 22.4 0.0 0.00012 21.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|298676002|ref|YP_003727752.1| - 0.00026 20.8 0.0 0.00074 19.3 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|298676002|ref|YP_003727752.1| - 0.00053 18.5 37.6 0.00053 18.5 26.1 5.5 2 1 3 5 5 5 2 AAA domain Reo_sigmaC PF04582.7 gi|298676002|ref|YP_003727752.1| - 0.011 14.9 36.5 0.074 12.2 2.5 4.8 1 1 1 4 4 4 0 Reovirus sigma C capsid protein MukB PF04310.7 gi|298676002|ref|YP_003727752.1| - 0.022 14.1 0.8 0.1 11.9 0.0 2.5 2 1 1 3 3 3 0 MukB N-terminal AAA_16 PF13191.1 gi|298676002|ref|YP_003727752.1| - 0.033 14.1 0.7 0.15 12.0 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|298676002|ref|YP_003727752.1| - 0.064 13.7 0.0 0.064 13.7 0.0 4.5 3 2 1 4 4 4 0 Miro-like protein IncA PF04156.9 gi|298676002|ref|YP_003727752.1| - 0.51 9.8 104.3 0.15 11.6 10.7 6.8 1 1 6 7 7 6 0 IncA protein Myosin_tail_1 PF01576.14 gi|298676002|ref|YP_003727752.1| - 0.84 7.2 117.1 1.5 6.4 17.2 3.0 1 1 2 3 3 3 0 Myosin tail AAA_22 PF13401.1 gi|298676002|ref|YP_003727752.1| - 1.8 8.7 0.0 1.8 8.7 0.0 4.2 4 1 0 4 4 4 0 AAA domain WXG100 PF06013.7 gi|298676002|ref|YP_003727752.1| - 2.1 8.3 33.1 1 9.3 0.0 7.6 7 3 2 9 9 9 0 Proteins of 100 residues with WXG APG6 PF04111.7 gi|298676002|ref|YP_003727752.1| - 5.4 5.9 117.4 0.15 11.0 8.3 6.1 1 1 5 6 6 6 0 Autophagy protein Apg6 AAA_27 PF13514.1 gi|298676002|ref|YP_003727752.1| - 8.1 3.9 78.0 0.093 10.4 17.3 3.6 1 1 1 3 3 3 0 AAA domain Metallophos_2 PF12850.2 gi|298676003|ref|YP_003727753.1| - 1.4e-14 54.1 0.1 2.9e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|298676003|ref|YP_003727753.1| - 6e-13 48.6 0.3 1.7e-12 47.2 0.2 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase OrfB_IS605 PF01385.14 gi|298676004|ref|YP_003727754.1| - 4.6e-15 55.6 0.1 4.6e-15 55.6 0.1 1.8 2 0 0 2 2 2 1 Probable transposase DUF919 PF06034.6 gi|298676004|ref|YP_003727754.1| - 0.0011 18.5 0.5 0.0022 17.5 0.3 1.5 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF4612 PF15389.1 gi|298676004|ref|YP_003727754.1| - 0.033 14.8 0.2 0.05 14.2 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4612) DUF3872 PF12988.2 gi|298676004|ref|YP_003727754.1| - 0.07 12.6 4.7 0.092 12.2 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3872) DUF3887 PF13026.1 gi|298676004|ref|YP_003727754.1| - 0.099 12.9 0.5 0.16 12.2 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3887) PAF-AH_p_II PF03403.8 gi|298676005|ref|YP_003727755.1| - 0.003 15.9 0.0 0.0039 15.5 0.0 1.0 1 0 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II zf-C3HC4_3 PF13920.1 gi|298676005|ref|YP_003727755.1| - 0.025 14.2 0.7 0.056 13.1 0.5 1.6 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Rubredoxin PF00301.15 gi|298676005|ref|YP_003727755.1| - 0.87 9.5 10.5 1.4e+02 2.4 7.3 2.5 1 1 0 1 1 1 0 Rubredoxin A2L_zn_ribbon PF08792.5 gi|298676005|ref|YP_003727755.1| - 1.1 8.7 4.5 17 4.9 3.1 2.6 1 1 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|298676006|ref|YP_003727756.1| - 0.021 14.6 0.7 0.026 14.3 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon Exonuc_VII_S PF02609.11 gi|298676006|ref|YP_003727756.1| - 0.057 13.1 0.8 0.76 9.6 0.1 2.2 2 0 0 2 2 2 0 Exonuclease VII small subunit zf-B_box PF00643.19 gi|298676006|ref|YP_003727756.1| - 0.34 10.8 2.5 0.51 10.2 1.7 1.3 1 0 0 1 1 1 0 B-box zinc finger DUF1289 PF06945.8 gi|298676006|ref|YP_003727756.1| - 0.79 9.2 3.4 1.9 7.9 2.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1289) C1_3 PF07649.7 gi|298676006|ref|YP_003727756.1| - 3.6 7.6 6.4 0.78 9.8 1.3 2.1 2 1 0 2 2 2 0 C1-like domain FMN_red PF03358.10 gi|298676007|ref|YP_003727757.1| - 7.2e-23 80.7 0.0 9.1e-23 80.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|298676007|ref|YP_003727757.1| - 3.8e-10 39.6 0.0 5.1e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold HEM4 PF02602.10 gi|298676008|ref|YP_003727758.1| - 9.7e-37 126.4 0.0 2.4e-33 115.2 0.0 1.7 1 1 1 2 2 2 2 Uroporphyrinogen-III synthase HemD HHH_5 PF14520.1 gi|298676008|ref|YP_003727758.1| - 0.0066 16.6 0.0 0.032 14.3 0.0 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|298676008|ref|YP_003727758.1| - 0.01 15.8 0.0 1 9.5 0.0 2.8 2 0 0 2 2 2 0 IMS family HHH motif HHH PF00633.18 gi|298676008|ref|YP_003727758.1| - 0.049 13.3 0.1 4.7 7.1 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif CTP_transf_2 PF01467.21 gi|298676010|ref|YP_003727760.1| - 1.9e-17 63.7 0.0 2.7e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|298676010|ref|YP_003727760.1| - 0.059 12.8 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain FAD_syn PF06574.7 gi|298676010|ref|YP_003727760.1| - 0.062 12.9 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase HIGH_NTase1 PF05636.6 gi|298676010|ref|YP_003727760.1| - 0.12 11.3 0.0 1.9 7.4 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase FrhB_FdhB_C PF04432.8 gi|298676011|ref|YP_003727761.1| - 2.1e-41 140.9 1.0 2.7e-41 140.6 0.0 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|298676011|ref|YP_003727761.1| - 1.6e-18 66.3 0.0 2.6e-18 65.6 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_7 PF12838.2 gi|298676011|ref|YP_003727761.1| - 1.8e-08 34.5 11.0 1.8e-08 34.5 7.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298676011|ref|YP_003727761.1| - 9e-08 31.4 21.5 6.2e-07 28.7 4.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|298676011|ref|YP_003727761.1| - 9.3e-07 29.0 9.7 9.3e-07 29.0 6.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298676011|ref|YP_003727761.1| - 1.5e-06 27.8 9.3 1.5e-06 27.8 6.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|298676011|ref|YP_003727761.1| - 1.2e-05 25.2 9.5 1.2e-05 25.2 6.6 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298676011|ref|YP_003727761.1| - 5.1e-05 23.9 14.4 0.00032 21.3 8.5 3.0 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|298676011|ref|YP_003727761.1| - 5.4e-05 23.4 6.2 5.4e-05 23.4 4.3 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|298676011|ref|YP_003727761.1| - 8e-05 22.9 7.3 0.1 13.0 1.4 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|298676011|ref|YP_003727761.1| - 0.00034 21.1 4.0 0.0061 17.0 0.5 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|298676011|ref|YP_003727761.1| - 0.00042 20.0 5.8 0.00042 20.0 4.0 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|298676011|ref|YP_003727761.1| - 0.0047 17.1 3.7 0.0047 17.1 2.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|298676011|ref|YP_003727761.1| - 0.006 16.4 4.8 0.006 16.4 3.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298676011|ref|YP_003727761.1| - 0.013 15.3 15.0 0.013 15.3 10.4 3.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|298676011|ref|YP_003727761.1| - 0.35 11.3 20.0 0.86 10.0 1.8 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Bac_luciferase PF00296.15 gi|298676012|ref|YP_003727762.1| - 2.3e-68 230.5 0.0 2.6e-68 230.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF1522 PF07482.6 gi|298676012|ref|YP_003727762.1| - 0.044 13.9 1.8 0.14 12.3 0.2 2.3 3 0 0 3 3 3 0 Domain of Unknown Function (DUF1522) Desulfoferrod_N PF06397.7 gi|298676014|ref|YP_003727764.1| - 3.3e-14 51.9 10.8 3.5e-14 51.8 7.5 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain zf-UDP PF14569.1 gi|298676014|ref|YP_003727764.1| - 0.0032 17.2 2.4 0.0032 17.2 1.6 1.1 1 0 0 1 1 1 1 Zinc-binding RING-finger DUF3449 PF11931.3 gi|298676014|ref|YP_003727764.1| - 0.058 12.9 0.2 0.06 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3449) zf-NADH-PPase PF09297.6 gi|298676014|ref|YP_003727764.1| - 0.15 11.5 0.8 3.7 7.1 0.0 2.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|298676014|ref|YP_003727764.1| - 0.16 11.4 1.4 0.66 9.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain RRN7 PF11781.3 gi|298676014|ref|YP_003727764.1| - 0.21 11.1 2.5 0.25 10.8 1.7 1.2 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 PhnA_Zn_Ribbon PF08274.7 gi|298676014|ref|YP_003727764.1| - 0.73 9.6 3.9 3.8 7.3 0.4 2.2 1 1 1 2 2 2 0 PhnA Zinc-Ribbon DUF2180 PF09947.4 gi|298676015|ref|YP_003727765.1| - 4.4e-25 87.2 11.1 5.2e-25 86.9 7.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) Nudix_N_2 PF14803.1 gi|298676015|ref|YP_003727765.1| - 0.086 12.5 0.8 0.086 12.5 0.6 2.3 3 0 0 3 3 3 0 Nudix N-terminal Tnp_zf-ribbon_2 PF13842.1 gi|298676015|ref|YP_003727765.1| - 0.19 12.1 0.6 0.19 12.1 0.4 2.3 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C3HC4_3 PF13920.1 gi|298676015|ref|YP_003727765.1| - 0.25 11.0 8.7 1.8 8.2 0.5 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-AN1 PF01428.11 gi|298676015|ref|YP_003727765.1| - 0.38 10.6 9.0 1.5 8.7 0.9 2.3 2 0 0 2 2 2 0 AN1-like Zinc finger FYVE PF01363.16 gi|298676015|ref|YP_003727765.1| - 0.56 10.1 7.7 1.3 8.9 5.3 1.7 1 1 0 1 1 1 0 FYVE zinc finger zf-RING-like PF08746.6 gi|298676015|ref|YP_003727765.1| - 0.78 9.7 5.6 1.8 8.6 3.9 1.7 1 1 0 1 1 1 0 RING-like domain zf-AD PF07776.10 gi|298676015|ref|YP_003727765.1| - 1.1 9.3 8.7 0.52 10.3 3.3 2.2 2 1 0 2 2 2 0 Zinc-finger associated domain (zf-AD) DZR PF12773.2 gi|298676015|ref|YP_003727765.1| - 1.5 8.6 7.7 1.9 8.3 0.5 2.3 2 0 0 2 2 2 0 Double zinc ribbon DUF2256 PF10013.4 gi|298676015|ref|YP_003727765.1| - 1.9 8.3 4.3 2.8 7.7 0.3 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) PhnA_Zn_Ribbon PF08274.7 gi|298676015|ref|YP_003727765.1| - 2.4 8.0 9.0 3.5 7.4 1.4 3.2 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-RING_3 PF14369.1 gi|298676015|ref|YP_003727765.1| - 7.1 6.7 10.5 11 6.1 0.7 2.8 2 1 0 2 2 2 0 zinc-finger DUF2180 PF09947.4 gi|298676016|ref|YP_003727766.1| - 1.3e-21 76.1 2.5 1.4e-21 75.9 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2180) FYVE PF01363.16 gi|298676016|ref|YP_003727766.1| - 0.017 14.9 4.1 0.06 13.2 2.8 1.9 1 1 0 1 1 1 0 FYVE zinc finger zf-FCS PF06467.9 gi|298676016|ref|YP_003727766.1| - 0.022 14.3 1.5 0.3 10.7 0.4 2.3 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Tnp_zf-ribbon_2 PF13842.1 gi|298676016|ref|YP_003727766.1| - 0.023 15.0 7.9 0.026 14.8 2.6 2.0 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-RING_5 PF14634.1 gi|298676016|ref|YP_003727766.1| - 0.08 12.6 4.6 0.28 10.9 0.8 2.1 2 0 0 2 2 2 0 zinc-RING finger domain zf-C3HC4_3 PF13920.1 gi|298676016|ref|YP_003727766.1| - 0.11 12.1 6.0 1.7 8.3 1.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Gin PF10764.4 gi|298676016|ref|YP_003727766.1| - 0.33 10.7 7.4 0.49 10.1 0.1 2.5 2 1 0 2 2 2 0 Inhibitor of sigma-G Gin HypA PF01155.14 gi|298676016|ref|YP_003727766.1| - 1.1 8.9 3.2 4.5 6.9 1.4 2.0 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|298676016|ref|YP_003727766.1| - 1.6 8.7 5.3 12 6.0 1.1 2.6 2 1 0 2 2 2 0 zinc-finger zf-C3HC4_2 PF13923.1 gi|298676016|ref|YP_003727766.1| - 3.4 7.7 6.5 23 5.0 0.0 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.8 gi|298676016|ref|YP_003727766.1| - 3.5 7.4 8.3 2.3 8.0 3.3 2.3 2 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-AN1 PF01428.11 gi|298676016|ref|YP_003727766.1| - 3.9 7.4 10.0 8.7 6.3 4.4 2.5 2 1 1 3 3 3 0 AN1-like Zinc finger CMD PF02627.15 gi|298676017|ref|YP_003727767.1| - 3.1e-15 55.7 0.2 3.9e-15 55.4 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Cytochrome_C554 PF13435.1 gi|298676018|ref|YP_003727768.1| - 4.9e-17 62.1 3.9 1e-14 54.7 1.3 2.3 2 0 0 2 2 2 2 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|298676018|ref|YP_003727768.1| - 6e-07 29.0 13.5 0.011 15.3 4.0 3.3 1 1 2 3 3 3 3 Cytochrome c7 Cytochrom_c3_2 PF14537.1 gi|298676018|ref|YP_003727768.1| - 0.0019 18.4 15.6 19 5.6 0.3 3.4 1 1 1 2 2 2 0 Cytochrome c3 Cytochrom_NNT PF03264.9 gi|298676018|ref|YP_003727768.1| - 0.0025 17.2 14.5 0.022 14.1 0.8 3.0 2 1 1 3 3 3 2 NapC/NirT cytochrome c family, N-terminal region Paired_CXXCH_1 PF09699.5 gi|298676018|ref|YP_003727768.1| - 0.027 13.9 15.2 6.7 6.3 3.3 4.9 4 1 1 5 5 5 0 Doubled CXXCH motif (Paired_CXXCH_1) DZR PF12773.2 gi|298676018|ref|YP_003727768.1| - 0.47 10.3 7.8 2.9 7.7 0.2 3.3 3 1 0 3 3 3 0 Double zinc ribbon Cytochrome_CBB3 PF13442.1 gi|298676018|ref|YP_003727768.1| - 1.3 9.2 17.4 19 5.4 0.1 5.2 2 1 3 5 5 5 0 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C552 PF02335.10 gi|298676018|ref|YP_003727768.1| - 1.8 7.1 10.7 0.22 10.1 0.1 2.6 2 1 0 2 2 2 0 Cytochrome c552 Cytochrom_CIII PF02085.11 gi|298676018|ref|YP_003727768.1| - 2.4 8.3 15.6 11 6.1 2.0 3.1 1 1 0 2 2 2 0 Class III cytochrome C family FMN_red PF03358.10 gi|298676019|ref|YP_003727769.1| - 1.1e-29 102.9 0.0 1.4e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|298676019|ref|YP_003727769.1| - 3.4e-05 23.4 0.0 5.1e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold NAD_binding_1 PF00175.16 gi|298676020|ref|YP_003727770.1| - 4.8e-19 68.9 0.0 6.7e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|298676020|ref|YP_003727770.1| - 1.1e-16 60.7 0.0 1.7e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|298676020|ref|YP_003727770.1| - 2.2e-07 30.9 0.9 1.7e-06 28.0 0.1 2.1 1 1 1 2 2 2 1 Ferric reductase NAD binding domain FAD_binding_8 PF08022.7 gi|298676020|ref|YP_003727770.1| - 5.4e-07 29.4 0.0 1.5e-06 27.9 0.0 1.7 1 1 0 1 1 1 1 FAD-binding domain Rubrerythrin PF02915.12 gi|298676021|ref|YP_003727771.1| - 1.2e-33 116.3 3.9 1.6e-33 115.9 2.7 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|298676021|ref|YP_003727771.1| - 1.2e-07 31.5 0.7 1.6e-07 31.1 0.5 1.1 1 0 0 1 1 1 1 Ferritin-like domain zf-like PF04071.7 gi|298676021|ref|YP_003727771.1| - 0.0035 17.0 0.5 0.0063 16.1 0.1 1.6 2 0 0 2 2 2 1 Cysteine-rich small domain HypA PF01155.14 gi|298676021|ref|YP_003727771.1| - 0.03 14.0 0.1 0.051 13.2 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|298676021|ref|YP_003727771.1| - 0.041 13.5 1.2 7.5 6.2 0.1 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2296 PF10058.4 gi|298676021|ref|YP_003727771.1| - 0.09 12.5 2.1 0.31 10.7 0.2 2.8 4 0 0 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) RecR PF02132.10 gi|298676021|ref|YP_003727771.1| - 0.16 11.3 0.3 0.33 10.4 0.2 1.5 1 0 0 1 1 1 0 RecR protein RNA_POL_M_15KD PF02150.11 gi|298676021|ref|YP_003727771.1| - 0.2 11.3 0.0 0.2 11.3 0.0 1.7 2 0 0 2 2 1 0 RNA polymerases M/15 Kd subunit DUF892 PF05974.7 gi|298676021|ref|YP_003727771.1| - 0.23 11.2 2.2 0.51 10.1 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF892) SprT-like PF10263.4 gi|298676021|ref|YP_003727771.1| - 0.27 10.8 2.0 0.31 10.6 0.6 1.7 2 1 0 2 2 2 0 SprT-like family DUF4379 PF14311.1 gi|298676021|ref|YP_003727771.1| - 0.69 9.7 4.6 1.9 8.3 3.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) Flavoprotein PF02441.14 gi|298676022|ref|YP_003727772.1| - 2.1e-20 72.7 0.0 3e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein NAD_binding_5 PF07994.7 gi|298676024|ref|YP_003727774.1| - 6.2e-58 196.6 0.0 1.7e-57 195.2 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|298676024|ref|YP_003727774.1| - 1.5e-33 114.9 0.2 1.2e-32 111.9 0.0 2.3 3 0 0 3 3 3 1 Myo-inositol-1-phosphate synthase Rubrerythrin PF02915.12 gi|298676025|ref|YP_003727775.1| - 1.6e-19 70.6 2.3 1.9e-19 70.3 1.6 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.1 gi|298676025|ref|YP_003727775.1| - 2.9e-11 43.4 0.0 3.7e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|298676025|ref|YP_003727775.1| - 5.1e-07 29.9 0.7 0.0057 16.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF2202 PF09968.4 gi|298676025|ref|YP_003727775.1| - 0.031 13.9 2.3 0.42 10.2 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein domain (DUF2202) Mn_catalase PF05067.7 gi|298676025|ref|YP_003727775.1| - 0.063 12.0 0.1 0.68 8.6 0.0 2.0 2 0 0 2 2 2 0 Manganese containing catalase EAP30 PF04157.11 gi|298676025|ref|YP_003727775.1| - 0.12 11.5 0.8 0.16 11.1 0.5 1.3 1 1 0 1 1 1 0 EAP30/Vps36 family COQ7 PF03232.8 gi|298676025|ref|YP_003727775.1| - 0.18 11.2 1.2 0.82 9.1 0.1 2.0 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Lzipper-MIP1 PF14389.1 gi|298676025|ref|YP_003727775.1| - 0.24 11.5 4.5 5.7 7.1 0.4 2.5 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 Lactamase_B PF00753.22 gi|298676026|ref|YP_003727776.1| - 2.7e-21 76.1 0.0 4.5e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|298676026|ref|YP_003727776.1| - 1.1e-10 41.6 0.0 2.5e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|298676026|ref|YP_003727776.1| - 0.0053 16.3 0.0 0.0096 15.4 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain FMN_red PF03358.10 gi|298676026|ref|YP_003727776.1| - 0.021 14.3 0.1 0.16 11.4 0.1 2.2 1 1 0 1 1 1 0 NADPH-dependent FMN reductase CGGC PF08821.6 gi|298676027|ref|YP_003727777.1| - 1.3e-35 121.7 3.5 1.4e-35 121.5 2.4 1.0 1 0 0 1 1 1 1 CGGC domain Phage_X PF05155.10 gi|298676027|ref|YP_003727777.1| - 0.1 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Phage X family zf-C2H2 PF00096.21 gi|298676027|ref|YP_003727777.1| - 1.1 9.6 6.9 7.8 7.0 0.1 3.3 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-DNL PF05180.7 gi|298676027|ref|YP_003727777.1| - 8.5 6.1 7.0 3.7 7.3 2.6 2.1 2 1 0 2 2 2 0 DNL zinc finger Fer4_7 PF12838.2 gi|298676028|ref|YP_003727778.1| - 6.5e-11 42.4 34.1 2e-07 31.2 6.7 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298676028|ref|YP_003727778.1| - 3.7e-10 39.2 7.8 8.9e-08 31.6 2.4 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.22 gi|298676028|ref|YP_003727778.1| - 1.3e-09 37.1 17.2 1.4e-05 24.4 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298676028|ref|YP_003727778.1| - 3e-09 36.5 5.3 3e-09 36.5 3.7 2.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298676028|ref|YP_003727778.1| - 8.1e-07 28.7 7.3 8.1e-07 28.7 5.0 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298676028|ref|YP_003727778.1| - 1.2e-06 29.0 11.9 0.0025 18.5 2.2 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|298676028|ref|YP_003727778.1| - 1.3e-06 28.6 7.7 1.3e-06 28.6 5.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|298676028|ref|YP_003727778.1| - 4.2e-05 23.2 13.3 0.00071 19.3 2.8 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|298676028|ref|YP_003727778.1| - 0.00024 21.5 12.3 0.008 16.7 1.1 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|298676028|ref|YP_003727778.1| - 0.0017 18.6 10.5 0.093 13.0 0.4 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|298676028|ref|YP_003727778.1| - 0.0071 16.2 2.9 0.0071 16.2 2.0 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|298676028|ref|YP_003727778.1| - 0.013 15.2 3.1 16 5.4 0.2 3.4 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.1 gi|298676028|ref|YP_003727778.1| - 0.04 13.9 16.4 0.25 11.4 5.9 2.9 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF2180 PF09947.4 gi|298676028|ref|YP_003727778.1| - 0.21 11.3 0.1 0.21 11.3 0.1 3.1 2 2 2 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2180) Fer4_4 PF12800.2 gi|298676028|ref|YP_003727778.1| - 0.69 10.4 19.1 0.15 12.4 2.5 3.9 4 0 0 4 4 4 0 4Fe-4S binding domain CBS PF00571.23 gi|298676029|ref|YP_003727779.1| - 5.2e-27 93.3 2.7 5.6e-14 51.6 0.2 2.3 2 0 0 2 2 2 2 CBS domain DUF1786 PF08735.5 gi|298676029|ref|YP_003727779.1| - 0.0058 15.8 1.0 0.0073 15.5 0.7 1.2 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) Sp100 PF03172.8 gi|298676029|ref|YP_003727779.1| - 0.081 12.8 1.0 0.48 10.4 0.3 2.1 1 1 1 2 2 2 0 Sp100 domain Na_H_Exchanger PF00999.16 gi|298676030|ref|YP_003727780.1| - 4.2e-63 213.1 52.9 4.8e-63 212.9 36.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.23 gi|298676031|ref|YP_003727781.1| - 1.1e-24 85.8 2.0 1.8e-12 46.8 0.1 2.1 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.16 gi|298676032|ref|YP_003727782.1| - 2.3e-57 194.2 50.1 2.8e-57 193.9 34.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Strabismus PF06638.6 gi|298676033|ref|YP_003727783.1| - 0.14 10.4 0.1 0.15 10.3 0.0 1.0 1 0 0 1 1 1 0 Strabismus protein Radical_SAM PF04055.16 gi|298676034|ref|YP_003727784.1| - 5.1e-19 69.0 2.1 5.9e-19 68.8 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|298676034|ref|YP_003727784.1| - 6.6e-07 29.3 1.9 6.7e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|298676034|ref|YP_003727784.1| - 1.5e-05 25.1 0.3 5.4e-05 23.3 0.0 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain HTH_5 PF01022.15 gi|298676035|ref|YP_003727785.1| - 1.7e-14 53.1 0.7 2.4e-14 52.6 0.5 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|298676035|ref|YP_003727785.1| - 3.9e-11 42.5 0.1 5.3e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|298676035|ref|YP_003727785.1| - 0.00023 20.9 0.3 0.00034 20.3 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2513 PF10711.4 gi|298676035|ref|YP_003727785.1| - 0.0025 17.8 0.1 0.0038 17.2 0.1 1.3 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|298676035|ref|YP_003727785.1| - 0.0054 16.7 0.2 0.0075 16.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rio2_N PF09202.6 gi|298676035|ref|YP_003727785.1| - 0.018 15.1 1.6 0.044 13.8 1.1 1.7 1 1 0 1 1 1 0 Rio2, N-terminal HTH_12 PF08461.5 gi|298676035|ref|YP_003727785.1| - 0.044 13.5 0.2 0.081 12.6 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain ArsR PF09824.4 gi|298676035|ref|YP_003727785.1| - 0.072 12.4 0.0 0.099 11.9 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_24 PF13412.1 gi|298676035|ref|YP_003727785.1| - 0.12 11.7 0.3 1.3 8.4 0.2 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding NikR_C PF08753.6 gi|298676036|ref|YP_003727786.1| - 4.3e-31 106.6 0.4 5.8e-31 106.2 0.2 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|298676036|ref|YP_003727786.1| - 3e-11 42.7 0.2 9.2e-11 41.1 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF4090 PF13319.1 gi|298676036|ref|YP_003727786.1| - 0.052 13.4 0.1 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4090) SAICAR_synt PF01259.13 gi|298676037|ref|YP_003727787.1| - 8.8e-59 198.6 2.4 1e-58 198.4 1.7 1.0 1 0 0 1 1 1 1 SAICAR synthetase DUF650 PF04894.7 gi|298676038|ref|YP_003727788.1| - 2.8e-101 338.6 0.0 3.6e-101 338.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|298676038|ref|YP_003727788.1| - 2e-39 133.6 0.0 3.7e-39 132.7 0.0 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Sigma70_r4 PF04545.11 gi|298676039|ref|YP_003727789.1| - 4.1e-05 22.7 0.0 8.1e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|298676039|ref|YP_003727789.1| - 0.00025 20.3 0.0 0.00076 18.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|298676039|ref|YP_003727789.1| - 0.00038 20.2 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|298676039|ref|YP_003727789.1| - 0.0006 19.2 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|298676039|ref|YP_003727789.1| - 0.00091 19.0 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix KorB PF08535.5 gi|298676039|ref|YP_003727789.1| - 0.0016 18.5 0.0 0.0034 17.4 0.0 1.5 1 1 0 1 1 1 1 KorB domain HTH_23 PF13384.1 gi|298676039|ref|YP_003727789.1| - 0.0018 17.8 0.1 0.0046 16.5 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|298676039|ref|YP_003727789.1| - 0.0026 17.4 0.0 0.0053 16.4 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_ECF PF07638.6 gi|298676039|ref|YP_003727789.1| - 0.007 16.0 0.0 0.042 13.5 0.0 1.8 1 1 1 2 2 2 1 ECF sigma factor HTH_38 PF13936.1 gi|298676039|ref|YP_003727789.1| - 0.018 14.6 0.0 0.035 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|298676039|ref|YP_003727789.1| - 0.021 14.1 0.0 0.07 12.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|298676039|ref|YP_003727789.1| - 0.025 14.2 0.0 0.062 12.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|298676039|ref|YP_003727789.1| - 0.033 13.8 0.0 0.052 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_19 PF12844.2 gi|298676039|ref|YP_003727789.1| - 0.04 13.9 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Crp PF00325.15 gi|298676039|ref|YP_003727789.1| - 0.057 12.8 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_17 PF12728.2 gi|298676039|ref|YP_003727789.1| - 0.071 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|298676039|ref|YP_003727789.1| - 0.071 13.3 0.0 0.098 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|298676039|ref|YP_003727789.1| - 0.086 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|298676039|ref|YP_003727789.1| - 0.13 12.0 0.0 0.43 10.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1670 PF07900.6 gi|298676039|ref|YP_003727789.1| - 0.14 11.3 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) SUI1 PF01253.17 gi|298676040|ref|YP_003727790.1| - 1.7e-25 88.6 0.1 2.1e-25 88.3 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|298676040|ref|YP_003727790.1| - 0.53 9.4 2.0 0.7 9.0 1.4 1.1 1 0 0 1 1 1 0 DTW domain DUF192 PF02643.10 gi|298676041|ref|YP_003727791.1| - 4.4e-23 81.0 0.0 5.4e-23 80.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 AIRS_C PF02769.17 gi|298676042|ref|YP_003727792.1| - 4e-43 147.0 2.0 8.2e-27 94.0 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|298676042|ref|YP_003727792.1| - 1.3e-42 143.9 1.6 3.4e-24 84.9 0.0 3.3 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain UPF0126 PF03458.8 gi|298676042|ref|YP_003727792.1| - 0.084 12.5 0.1 0.28 10.8 0.0 1.9 2 0 0 2 2 2 0 UPF0126 domain Fe_dep_repr_C PF02742.10 gi|298676043|ref|YP_003727793.1| - 1.5e-23 82.2 0.1 2.9e-23 81.3 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain FeoA PF04023.9 gi|298676043|ref|YP_003727793.1| - 1.4e-13 50.5 0.0 7.5e-13 48.2 0.0 2.0 2 0 0 2 2 2 1 FeoA domain UPF0547 PF10571.4 gi|298676044|ref|YP_003727794.1| - 1.1e-06 28.1 11.3 0.0043 16.7 0.1 2.5 2 1 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|298676044|ref|YP_003727794.1| - 2.8e-06 26.3 7.3 0.005 15.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|298676044|ref|YP_003727794.1| - 1.6e-05 24.2 12.8 0.0037 16.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|298676044|ref|YP_003727794.1| - 0.00053 19.7 10.4 0.0017 18.1 7.2 1.7 1 1 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|298676044|ref|YP_003727794.1| - 0.0032 17.1 5.5 0.051 13.3 1.6 2.1 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|298676044|ref|YP_003727794.1| - 0.0053 16.2 5.6 0.62 9.6 0.1 3.2 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|298676044|ref|YP_003727794.1| - 0.0088 15.8 7.7 0.64 9.8 5.4 2.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon Rubredoxin PF00301.15 gi|298676044|ref|YP_003727794.1| - 0.0097 15.7 6.7 1.6 8.6 1.9 2.6 2 1 0 2 2 2 2 Rubredoxin zf-DNA_Pol PF08996.5 gi|298676044|ref|YP_003727794.1| - 0.019 14.3 2.3 0.021 14.1 1.6 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zinc_ribbon_4 PF13717.1 gi|298676044|ref|YP_003727794.1| - 0.023 14.3 7.6 2.6 7.8 0.3 3.5 3 1 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|298676044|ref|YP_003727794.1| - 0.024 14.9 4.0 0.027 14.7 2.8 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|298676044|ref|YP_003727794.1| - 0.027 14.2 6.3 0.033 13.9 4.4 1.2 1 0 0 1 1 1 0 zinc-ribbons Rad50_zn_hook PF04423.9 gi|298676044|ref|YP_003727794.1| - 0.029 13.8 8.9 0.05 13.0 0.8 2.3 2 1 0 2 2 2 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.2 gi|298676044|ref|YP_003727794.1| - 0.038 13.8 8.5 0.86 9.4 0.3 2.3 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|298676044|ref|YP_003727794.1| - 0.15 11.7 10.0 2.2 7.9 0.3 3.4 2 2 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|298676044|ref|YP_003727794.1| - 0.15 11.8 6.4 3.9 7.3 1.5 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.8 gi|298676044|ref|YP_003727794.1| - 0.18 11.2 9.3 0.37 10.3 3.8 2.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPCC PF14206.1 gi|298676044|ref|YP_003727794.1| - 0.28 10.7 9.4 2.7 7.5 0.2 2.3 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-H2C2_2 PF13465.1 gi|298676044|ref|YP_003727794.1| - 0.54 10.6 0.6 0.54 10.6 0.4 3.2 2 1 1 3 3 3 0 Zinc-finger double domain FYVE PF01363.16 gi|298676044|ref|YP_003727794.1| - 0.54 10.1 6.0 1.3 9.0 4.2 1.6 1 1 0 1 1 1 0 FYVE zinc finger zf-H2C2_5 PF13909.1 gi|298676044|ref|YP_003727794.1| - 0.68 10.2 3.9 6.2 7.2 0.3 2.8 2 1 0 2 2 2 0 C2H2-type zinc-finger domain A2L_zn_ribbon PF08792.5 gi|298676044|ref|YP_003727794.1| - 0.68 9.4 10.2 7.5 6.1 0.1 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|298676044|ref|YP_003727794.1| - 0.76 9.4 9.9 5.1 6.8 0.7 2.4 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|298676044|ref|YP_003727794.1| - 0.8 10.1 12.6 0.83 10.1 0.1 3.4 3 1 1 4 4 3 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|298676044|ref|YP_003727794.1| - 0.81 10.1 0.1 0.81 10.1 0.1 3.1 2 1 0 2 2 1 0 C2H2-type zinc finger HypA PF01155.14 gi|298676044|ref|YP_003727794.1| - 0.97 9.1 6.9 9.9 5.8 4.8 2.0 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|298676044|ref|YP_003727794.1| - 0.97 8.9 0.1 0.97 8.9 0.1 3.1 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|298676044|ref|YP_003727794.1| - 1.5 8.1 11.8 1.9 7.8 0.1 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS91 PF14319.1 gi|298676044|ref|YP_003727794.1| - 1.8 8.0 9.2 2.5 7.6 6.4 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain YdjO PF14169.1 gi|298676044|ref|YP_003727794.1| - 2.2 7.7 6.8 4.6 6.7 1.0 2.6 1 1 2 3 3 3 0 Cold-inducible protein YdjO DUF329 PF03884.9 gi|298676044|ref|YP_003727794.1| - 2.2 7.8 8.4 6.1 6.4 0.4 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF329) zf-C3HC4_3 PF13920.1 gi|298676044|ref|YP_003727794.1| - 2.5 7.8 8.8 8.3 6.1 3.3 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|298676044|ref|YP_003727794.1| - 5.2 7.0 10.3 2.3e+02 1.7 7.1 2.6 1 1 0 1 1 1 0 IBR domain YhfH PF14149.1 gi|298676044|ref|YP_003727794.1| - 6.3 6.6 11.6 7.5 6.4 0.2 3.1 1 1 2 3 3 3 0 YhfH-like protein DUF1272 PF06906.6 gi|298676044|ref|YP_003727794.1| - 6.5 6.6 9.9 46 3.9 6.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-AN1 PF01428.11 gi|298676044|ref|YP_003727794.1| - 6.6 6.7 11.1 16 5.4 4.4 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger C1_1 PF00130.17 gi|298676044|ref|YP_003727794.1| - 6.9 6.4 9.8 44 3.8 6.8 2.0 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HC_2 PF13913.1 gi|298676044|ref|YP_003727794.1| - 7.8 6.2 14.6 3.5 7.4 0.3 3.2 2 1 1 3 3 3 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.5 gi|298676044|ref|YP_003727794.1| - 9.1 6.3 13.4 1.8e+02 2.1 4.6 3.0 1 1 1 2 2 2 0 Zinc ribbon domain CpXC PF14353.1 gi|298676044|ref|YP_003727794.1| - 9.1 6.2 8.7 3.3 7.6 0.3 2.6 1 1 2 3 3 3 0 CpXC protein Ribosomal_L44 PF00935.14 gi|298676044|ref|YP_003727794.1| - 9.2 6.3 6.7 24 5.0 0.0 2.7 1 1 2 3 3 3 0 Ribosomal protein L44 FeoB_N PF02421.13 gi|298676045|ref|YP_003727795.1| - 1.9e-50 170.1 0.0 3.7e-50 169.2 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|298676045|ref|YP_003727795.1| - 4.8e-23 81.1 22.1 6.1e-15 55.0 2.7 2.9 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|298676045|ref|YP_003727795.1| - 2e-19 69.6 0.0 4.3e-19 68.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|298676045|ref|YP_003727795.1| - 4.2e-12 45.3 2.4 4.2e-12 45.3 1.7 3.0 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus PduV-EutP PF10662.4 gi|298676045|ref|YP_003727795.1| - 0.00061 19.3 0.0 0.0015 18.0 0.0 1.7 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.11 gi|298676045|ref|YP_003727795.1| - 0.00087 18.4 0.2 0.0024 17.0 0.0 1.8 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.22 gi|298676045|ref|YP_003727795.1| - 0.0032 16.9 0.0 0.01 15.3 0.0 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.5 gi|298676045|ref|YP_003727795.1| - 0.013 14.7 0.0 0.025 13.8 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF99 PF01949.11 gi|298676045|ref|YP_003727795.1| - 0.017 14.2 0.6 0.53 9.3 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF99 ATP_bind_1 PF03029.12 gi|298676045|ref|YP_003727795.1| - 0.018 14.6 0.0 0.051 13.1 0.0 1.8 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|298676045|ref|YP_003727795.1| - 0.021 15.3 0.0 0.051 14.0 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein ArgK PF03308.11 gi|298676045|ref|YP_003727795.1| - 0.051 12.3 0.0 1.3 7.7 0.0 2.4 2 0 0 2 2 2 0 ArgK protein Vma12 PF11712.3 gi|298676045|ref|YP_003727795.1| - 0.059 13.0 1.6 8.2 6.1 0.2 2.7 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase PHA_synth_III_E PF09712.5 gi|298676045|ref|YP_003727795.1| - 0.061 12.7 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Dynamin_N PF00350.18 gi|298676045|ref|YP_003727795.1| - 0.17 11.7 4.7 0.92 9.3 0.0 2.9 2 2 1 3 3 3 0 Dynamin family Syntaxin-6_N PF09177.6 gi|298676045|ref|YP_003727795.1| - 3.4 8.1 6.6 1.2e+02 3.2 0.0 2.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal FMN_red PF03358.10 gi|298676046|ref|YP_003727796.1| - 2.2e-21 75.9 0.0 2.8e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|298676046|ref|YP_003727796.1| - 1.7e-07 30.9 0.0 2.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold TRAM PF01938.15 gi|298676047|ref|YP_003727797.1| - 5.3e-16 58.1 1.2 6e-16 57.9 0.8 1.1 1 0 0 1 1 1 1 TRAM domain DUF111 PF01969.12 gi|298676048|ref|YP_003727798.1| - 4.5e-132 440.4 1.0 5.1e-132 440.2 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 DUF1031 PF06275.6 gi|298676048|ref|YP_003727798.1| - 0.51 10.4 5.7 2.8 8.0 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1031) AAA PF00004.24 gi|298676049|ref|YP_003727799.1| - 7.2e-97 320.6 0.2 1.1e-47 161.5 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|298676049|ref|YP_003727799.1| - 1.1e-28 99.0 0.0 3.8e-28 97.2 0.0 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|298676049|ref|YP_003727799.1| - 1.1e-14 54.6 0.0 7.4e-07 29.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|298676049|ref|YP_003727799.1| - 8e-13 48.6 0.3 0.00097 19.2 0.1 4.4 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|298676049|ref|YP_003727799.1| - 1e-12 47.6 0.0 3.9e-05 22.8 0.0 3.0 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|298676049|ref|YP_003727799.1| - 1.5e-12 46.9 0.2 7.4e-12 44.7 0.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.9 gi|298676049|ref|YP_003727799.1| - 6e-12 45.4 0.8 3.6e-05 23.5 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|298676049|ref|YP_003727799.1| - 1.7e-11 44.0 0.0 8e-06 25.7 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|298676049|ref|YP_003727799.1| - 2.1e-10 41.4 0.0 0.001 19.8 0.0 3.5 3 0 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|298676049|ref|YP_003727799.1| - 9.7e-10 38.7 0.0 0.00089 19.2 0.0 3.4 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|298676049|ref|YP_003727799.1| - 1.7e-09 37.6 0.0 0.00041 20.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|298676049|ref|YP_003727799.1| - 6e-08 32.3 0.1 0.017 14.5 0.0 2.7 3 0 0 3 3 3 2 IstB-like ATP binding protein TIP49 PF06068.8 gi|298676049|ref|YP_003727799.1| - 6.8e-08 31.6 0.0 0.0024 16.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|298676049|ref|YP_003727799.1| - 1.4e-07 30.8 0.0 0.0089 15.1 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin AAA_19 PF13245.1 gi|298676049|ref|YP_003727799.1| - 3.7e-07 29.8 0.4 0.017 14.8 0.1 2.6 2 0 0 2 2 2 2 Part of AAA domain Sigma54_activat PF00158.21 gi|298676049|ref|YP_003727799.1| - 5.6e-07 29.1 0.0 0.068 12.6 0.0 3.6 3 0 0 3 3 3 2 Sigma-54 interaction domain AAA_18 PF13238.1 gi|298676049|ref|YP_003727799.1| - 3.2e-06 27.4 0.2 0.22 11.8 0.0 3.4 3 0 0 3 3 2 2 AAA domain PhoH PF02562.11 gi|298676049|ref|YP_003727799.1| - 9.1e-06 25.0 0.0 0.052 12.7 0.0 2.9 2 0 0 2 2 2 2 PhoH-like protein Mg_chelatase PF01078.16 gi|298676049|ref|YP_003727799.1| - 1.5e-05 24.2 0.6 0.067 12.3 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|298676049|ref|YP_003727799.1| - 2e-05 24.6 0.0 0.3 11.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|298676049|ref|YP_003727799.1| - 2.1e-05 24.8 0.8 0.16 12.2 0.0 3.0 3 0 0 3 3 2 2 ABC transporter Sigma54_activ_2 PF14532.1 gi|298676049|ref|YP_003727799.1| - 3.4e-05 23.8 0.0 0.078 13.0 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|298676049|ref|YP_003727799.1| - 4.1e-05 23.6 0.0 0.37 10.9 0.0 2.6 2 0 0 2 2 2 2 RNA helicase ResIII PF04851.10 gi|298676049|ref|YP_003727799.1| - 4.9e-05 23.2 0.0 0.29 10.9 0.0 2.8 2 1 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|298676049|ref|YP_003727799.1| - 0.00013 21.4 4.0 0.31 10.4 0.1 3.8 2 2 1 3 3 3 2 AAA domain NB-ARC PF00931.17 gi|298676049|ref|YP_003727799.1| - 0.00018 20.4 0.0 0.17 10.7 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.13 gi|298676049|ref|YP_003727799.1| - 0.00033 20.3 0.0 0.061 12.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|298676049|ref|YP_003727799.1| - 0.00037 20.0 0.1 0.22 10.9 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Arch_ATPase PF01637.13 gi|298676049|ref|YP_003727799.1| - 0.00044 20.0 4.4 0.2 11.3 0.0 4.3 4 2 1 5 5 3 1 Archaeal ATPase DUF2075 PF09848.4 gi|298676049|ref|YP_003727799.1| - 0.00053 19.0 0.0 0.64 8.9 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) KaiC PF06745.8 gi|298676049|ref|YP_003727799.1| - 0.00055 19.1 0.7 1.2 8.2 0.0 3.7 2 1 1 3 3 3 1 KaiC DUF815 PF05673.8 gi|298676049|ref|YP_003727799.1| - 0.00069 18.6 0.0 1 8.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|298676049|ref|YP_003727799.1| - 0.00069 19.3 0.2 2.9 7.5 0.0 4.0 4 0 0 4 4 4 1 NACHT domain Vps4_C PF09336.5 gi|298676049|ref|YP_003727799.1| - 0.0013 18.6 1.1 0.15 11.9 0.1 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain SKI PF01202.17 gi|298676049|ref|YP_003727799.1| - 0.0019 18.1 0.0 1.2 8.9 0.0 2.9 2 0 0 2 2 2 1 Shikimate kinase DEAD PF00270.24 gi|298676049|ref|YP_003727799.1| - 0.0019 17.6 1.3 4.7 6.6 0.0 4.1 2 2 2 4 4 4 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|298676049|ref|YP_003727799.1| - 0.0024 17.4 0.0 1.2 8.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.11 gi|298676049|ref|YP_003727799.1| - 0.0044 15.8 0.0 0.75 8.5 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase Guanylate_kin PF00625.16 gi|298676049|ref|YP_003727799.1| - 0.0053 16.2 0.8 4.8 6.5 0.0 3.8 3 1 1 4 4 3 0 Guanylate kinase Torsin PF06309.6 gi|298676049|ref|YP_003727799.1| - 0.0056 16.5 0.1 3.7 7.4 0.0 2.8 3 0 0 3 3 2 0 Torsin AAA_3 PF07726.6 gi|298676049|ref|YP_003727799.1| - 0.0094 15.5 0.0 1.9 8.1 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|298676049|ref|YP_003727799.1| - 0.012 15.1 0.0 0.83 9.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|298676049|ref|YP_003727799.1| - 0.016 14.8 0.1 2.3 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.12 gi|298676049|ref|YP_003727799.1| - 0.016 14.0 0.0 3.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 Viral_helicase1 PF01443.13 gi|298676049|ref|YP_003727799.1| - 0.024 14.1 0.0 3.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.10 gi|298676049|ref|YP_003727799.1| - 0.035 13.8 8.3 9.5 5.8 0.0 5.0 4 1 1 5 5 5 0 NTPase T2SE PF00437.15 gi|298676049|ref|YP_003727799.1| - 0.043 12.7 0.2 11 4.8 0.0 2.9 2 1 0 3 3 3 0 Type II/IV secretion system protein IPT PF01745.11 gi|298676049|ref|YP_003727799.1| - 0.053 12.6 0.1 1.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Isopentenyl transferase AAA_23 PF13476.1 gi|298676049|ref|YP_003727799.1| - 0.086 13.1 0.5 6.3 7.0 0.0 3.3 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.10 gi|298676049|ref|YP_003727799.1| - 0.089 11.4 0.0 0.41 9.2 0.0 1.9 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein UPF0079 PF02367.12 gi|298676049|ref|YP_003727799.1| - 0.095 12.3 0.3 22 4.7 0.0 3.0 2 1 1 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 PRC PF05239.11 gi|298676050|ref|YP_003727800.1| - 3.4e-12 46.0 0.1 4.1e-12 45.7 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain Hydrolase_3 PF08282.7 gi|298676051|ref|YP_003727801.1| - 5.5e-33 114.6 3.2 8.9e-21 74.6 1.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|298676051|ref|YP_003727801.1| - 1.3e-08 35.5 0.1 8.3e-05 23.0 0.0 2.8 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|298676051|ref|YP_003727801.1| - 3e-08 33.2 0.1 1e-05 24.9 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|298676051|ref|YP_003727801.1| - 5.1e-07 30.0 0.0 3.3e-05 24.1 0.0 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|298676051|ref|YP_003727801.1| - 0.0099 15.7 0.0 0.027 14.3 0.0 1.8 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase B1 PF02246.10 gi|298676051|ref|YP_003727801.1| - 0.051 13.3 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Protein L b1 domain HAD_2 PF13419.1 gi|298676051|ref|YP_003727801.1| - 0.056 13.6 0.0 0.3 11.2 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF2608 PF11019.3 gi|298676051|ref|YP_003727801.1| - 0.093 11.7 0.1 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2608) Rad51 PF08423.6 gi|298676052|ref|YP_003727802.1| - 7.5e-91 303.5 0.0 1.6e-90 302.4 0.0 1.5 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.1 gi|298676052|ref|YP_003727802.1| - 9.3e-13 48.0 0.0 1.4e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|298676052|ref|YP_003727802.1| - 6.2e-10 38.6 0.0 5.6e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|298676052|ref|YP_003727802.1| - 1.3e-08 34.8 0.1 2.6e-08 33.9 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain KaiC PF06745.8 gi|298676052|ref|YP_003727802.1| - 2e-08 33.6 0.0 2.9e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH_2 PF12826.2 gi|298676052|ref|YP_003727802.1| - 6.9e-05 22.6 0.0 0.00015 21.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif AAA_22 PF13401.1 gi|298676052|ref|YP_003727802.1| - 0.00031 20.8 0.0 0.00091 19.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|298676052|ref|YP_003727802.1| - 0.00043 20.4 0.1 0.0073 16.5 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdd1 PF11731.3 gi|298676052|ref|YP_003727802.1| - 0.0037 17.1 0.0 0.009 15.9 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DUF2075 PF09848.4 gi|298676052|ref|YP_003727802.1| - 0.0045 16.0 0.0 0.0055 15.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|298676052|ref|YP_003727802.1| - 0.0077 15.9 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|298676052|ref|YP_003727802.1| - 0.019 15.2 0.0 0.044 14.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|298676052|ref|YP_003727802.1| - 0.029 13.8 0.0 0.048 13.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP-synt_ab PF00006.20 gi|298676052|ref|YP_003727802.1| - 0.029 13.8 0.0 0.06 12.8 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DNA_pol_lambd_f PF10391.4 gi|298676052|ref|YP_003727802.1| - 0.049 13.1 0.0 0.14 11.7 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda AAA_24 PF13479.1 gi|298676052|ref|YP_003727802.1| - 0.057 12.9 0.0 0.13 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|298676052|ref|YP_003727802.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.6 1 1 0 1 1 1 0 NACHT domain SRP54_N PF02881.14 gi|298676052|ref|YP_003727802.1| - 0.13 12.3 0.0 0.73 9.9 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain DUF2092 PF09865.4 gi|298676052|ref|YP_003727802.1| - 0.14 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2092) CTP_transf_2 PF01467.21 gi|298676053|ref|YP_003727803.1| - 7.3e-10 39.1 0.0 1.1e-09 38.4 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|298676053|ref|YP_003727803.1| - 0.029 14.0 0.0 0.054 13.1 0.0 1.5 2 0 0 2 2 2 0 FAD synthetase Ribosomal_L22e PF01776.12 gi|298676053|ref|YP_003727803.1| - 0.068 13.1 0.5 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 Ribosomal L22e protein family Pantoate_ligase PF02569.10 gi|298676053|ref|YP_003727803.1| - 0.095 11.4 0.2 0.96 8.1 0.0 2.2 2 1 0 2 2 2 0 Pantoate-beta-alanine ligase DUF4351 PF14261.1 gi|298676054|ref|YP_003727804.1| - 0.00045 20.0 0.1 0.0055 16.5 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4351) SieB PF14163.1 gi|298676054|ref|YP_003727804.1| - 0.07 12.6 0.2 0.16 11.5 0.1 1.6 1 1 1 2 2 2 0 Superinfection exclusion protein B AP_endonuc_2 PF01261.19 gi|298676055|ref|YP_003727805.1| - 7.5e-15 54.7 0.0 8.9e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_24 PF13412.1 gi|298676056|ref|YP_003727806.1| - 2e-06 27.0 0.5 8.1e-06 25.1 0.1 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|298676056|ref|YP_003727806.1| - 8.9e-05 22.2 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|298676056|ref|YP_003727806.1| - 0.00034 20.2 0.1 0.00074 19.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|298676056|ref|YP_003727806.1| - 0.00041 19.9 0.0 0.00088 18.8 0.0 1.5 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|298676056|ref|YP_003727806.1| - 0.00051 19.6 0.1 0.00095 18.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|298676056|ref|YP_003727806.1| - 0.00096 19.5 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 Replication protein A C terminal MarR PF01047.17 gi|298676056|ref|YP_003727806.1| - 0.0017 18.0 0.1 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|298676056|ref|YP_003727806.1| - 0.0048 16.7 0.2 0.0076 16.1 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GerE PF00196.14 gi|298676056|ref|YP_003727806.1| - 0.014 14.6 0.1 0.16 11.2 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_45 PF14947.1 gi|298676056|ref|YP_003727806.1| - 0.017 14.9 0.2 0.026 14.3 0.2 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix RAP1 PF07218.6 gi|298676056|ref|YP_003727806.1| - 0.044 11.8 0.1 0.052 11.6 0.1 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) TFIIE_alpha PF02002.12 gi|298676056|ref|YP_003727806.1| - 0.052 13.0 0.1 0.1 12.0 0.1 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit B-block_TFIIIC PF04182.7 gi|298676056|ref|YP_003727806.1| - 0.055 13.3 0.1 0.082 12.7 0.1 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|298676056|ref|YP_003727806.1| - 0.065 13.3 0.1 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator z-alpha PF02295.12 gi|298676056|ref|YP_003727806.1| - 0.073 12.8 0.1 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Cpn10 PF00166.16 gi|298676057|ref|YP_003727807.1| - 2.4e-22 78.6 2.3 2.7e-22 78.5 1.6 1.0 1 0 0 1 1 1 1 Chaperonin 10 Kd subunit Qn_am_d_aII PF14930.1 gi|298676057|ref|YP_003727807.1| - 0.069 13.1 0.1 0.079 12.9 0.1 1.2 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain II Ribosomal_L30_N PF08079.7 gi|298676057|ref|YP_003727807.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal L30 N-terminal domain Cpn60_TCP1 PF00118.19 gi|298676058|ref|YP_003727808.1| - 6.8e-127 424.0 11.3 7.7e-127 423.8 7.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4055 PF13264.1 gi|298676058|ref|YP_003727808.1| - 0.23 11.5 0.1 0.23 11.5 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4055) ABC_tran PF00005.22 gi|298676059|ref|YP_003727809.1| - 8.7e-33 113.5 0.0 1.3e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298676059|ref|YP_003727809.1| - 2.7e-16 60.3 0.8 1.8e-09 38.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|298676059|ref|YP_003727809.1| - 2.2e-06 27.1 0.0 5.1e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|298676059|ref|YP_003727809.1| - 2.4e-05 23.5 0.3 0.0036 16.3 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|298676059|ref|YP_003727809.1| - 4e-05 22.3 0.4 0.13 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|298676059|ref|YP_003727809.1| - 0.00022 20.6 0.1 0.00053 19.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|298676059|ref|YP_003727809.1| - 0.0056 17.0 0.2 0.011 16.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|298676059|ref|YP_003727809.1| - 0.023 15.0 0.3 2.8 8.2 0.0 2.9 2 1 0 3 3 3 0 AAA domain Pr_beta_C PF12465.3 gi|298676059|ref|YP_003727809.1| - 0.029 13.6 0.0 0.061 12.5 0.0 1.5 1 0 0 1 1 1 0 Proteasome beta subunits C terminal DUF258 PF03193.11 gi|298676059|ref|YP_003727809.1| - 0.053 12.6 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|298676059|ref|YP_003727809.1| - 0.12 12.2 0.1 0.47 10.3 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CbiQ PF02361.11 gi|298676060|ref|YP_003727810.1| - 1.5e-35 122.8 13.4 1.5e-35 122.8 9.3 1.6 1 1 1 2 2 2 1 Cobalt transport protein CbiN PF02553.10 gi|298676061|ref|YP_003727811.1| - 6.5e-25 86.9 0.8 8e-25 86.6 0.5 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN DUF3552 PF12072.3 gi|298676061|ref|YP_003727811.1| - 0.083 12.1 0.4 1.5 8.0 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) CbiM PF01891.11 gi|298676062|ref|YP_003727812.1| - 8.9e-56 188.7 21.3 1e-55 188.5 14.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region TP_methylase PF00590.15 gi|298676063|ref|YP_003727813.1| - 1.3e-30 106.6 0.0 2.2e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1912 PF08930.5 gi|298676063|ref|YP_003727813.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1912) CbiD PF01888.12 gi|298676064|ref|YP_003727814.1| - 6e-52 176.1 3.1 1.1e-51 175.2 0.5 1.9 2 0 0 2 2 2 1 CbiD DNA_mis_repair PF01119.14 gi|298676065|ref|YP_003727815.1| - 7.2e-41 138.3 0.0 1.4e-40 137.4 0.0 1.5 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain MutL_C PF08676.6 gi|298676065|ref|YP_003727815.1| - 8e-37 126.0 0.0 1.5e-36 125.1 0.0 1.5 1 0 0 1 1 1 1 MutL C terminal dimerisation domain HATPase_c_3 PF13589.1 gi|298676065|ref|YP_003727815.1| - 9.3e-16 57.7 0.7 9.3e-16 57.7 0.5 2.2 2 1 1 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|298676065|ref|YP_003727815.1| - 3.2e-12 46.1 0.4 1.1e-11 44.4 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MutS_V PF00488.16 gi|298676066|ref|YP_003727816.1| - 5e-100 333.7 0.1 9.9e-100 332.7 0.0 1.5 2 0 0 2 2 2 1 MutS domain V MutS_III PF05192.13 gi|298676066|ref|YP_003727816.1| - 3e-45 154.5 1.0 6e-45 153.5 0.0 2.0 3 0 0 3 3 3 1 MutS domain III MutS_I PF01624.15 gi|298676066|ref|YP_003727816.1| - 6.6e-45 151.7 0.0 2.1e-44 150.1 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|298676066|ref|YP_003727816.1| - 2e-30 104.7 0.9 6.7e-30 103.1 0.6 2.0 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|298676066|ref|YP_003727816.1| - 6.8e-27 94.2 0.0 2.3e-26 92.5 0.0 2.0 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|298676066|ref|YP_003727816.1| - 0.04 13.4 0.0 0.093 12.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|298676066|ref|YP_003727816.1| - 0.3 11.4 14.1 2.9 8.1 0.0 3.9 4 1 0 4 4 4 0 AAA domain FMN_red PF03358.10 gi|298676067|ref|YP_003727817.1| - 3.7e-14 52.4 0.0 5.5e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_1 PF00258.20 gi|298676067|ref|YP_003727817.1| - 2.8e-07 30.6 0.2 3.6e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|298676067|ref|YP_003727817.1| - 7.9e-05 22.2 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold ABC2_membrane PF01061.19 gi|298676068|ref|YP_003727818.1| - 5.4e-22 78.0 26.8 5.4e-22 78.0 18.6 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|298676068|ref|YP_003727818.1| - 6.5e-08 31.9 36.7 9e-08 31.5 25.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|298676069|ref|YP_003727819.1| - 3e-33 115.0 0.0 6.1e-33 114.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|298676069|ref|YP_003727819.1| - 9.4e-17 61.8 0.0 5e-15 56.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|298676069|ref|YP_003727819.1| - 1.2e-05 24.5 0.1 0.0019 17.3 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|298676069|ref|YP_003727819.1| - 5.3e-05 22.5 0.1 0.00065 18.9 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|298676069|ref|YP_003727819.1| - 0.00026 21.3 0.9 0.00044 20.6 0.6 1.7 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|298676069|ref|YP_003727819.1| - 0.0034 15.9 0.0 0.005 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|298676069|ref|YP_003727819.1| - 0.0079 15.6 0.1 0.65 9.3 0.1 2.3 1 1 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|298676069|ref|YP_003727819.1| - 0.02 14.3 0.1 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP_bind_1 PF03029.12 gi|298676069|ref|YP_003727819.1| - 0.031 13.8 0.2 1.3 8.4 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|298676069|ref|YP_003727819.1| - 0.037 14.2 1.0 1.2 9.3 0.3 3.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|298676069|ref|YP_003727819.1| - 0.039 13.5 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|298676069|ref|YP_003727819.1| - 0.051 13.7 0.3 0.35 11.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|298676069|ref|YP_003727819.1| - 0.087 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain FeThRed_B PF02943.10 gi|298676070|ref|YP_003727820.1| - 7.8e-14 51.3 1.1 9.1e-14 51.0 0.8 1.1 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Glutaredoxin PF00462.19 gi|298676071|ref|YP_003727821.1| - 3.6e-15 55.7 0.2 5e-15 55.2 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin ArsC PF03960.10 gi|298676071|ref|YP_003727821.1| - 1.5e-05 25.0 1.2 0.00033 20.6 0.2 2.0 1 1 1 2 2 2 1 ArsC family Thioredoxin_2 PF13098.1 gi|298676071|ref|YP_003727821.1| - 5e-05 23.4 0.9 9.7e-05 22.5 0.6 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain DUF1462 PF07315.6 gi|298676071|ref|YP_003727821.1| - 5.6e-05 23.0 0.1 6.6e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1462) GST_N_3 PF13417.1 gi|298676071|ref|YP_003727821.1| - 0.00012 22.2 0.0 0.00015 21.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_4 PF13462.1 gi|298676071|ref|YP_003727821.1| - 0.0011 18.9 0.9 0.67 9.9 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_3 PF13192.1 gi|298676071|ref|YP_003727821.1| - 0.0033 17.2 0.1 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain SH3BGR PF04908.10 gi|298676071|ref|YP_003727821.1| - 0.0049 16.7 0.1 0.0054 16.6 0.0 1.1 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein Hexapep PF00132.19 gi|298676071|ref|YP_003727821.1| - 0.11 12.0 0.1 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) GST_N_2 PF13409.1 gi|298676071|ref|YP_003727821.1| - 0.12 12.3 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Rieske PF00355.21 gi|298676072|ref|YP_003727822.1| - 9e-19 66.8 0.0 1e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|298676072|ref|YP_003727822.1| - 3.1e-14 52.5 0.0 3.5e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain DUF3179 PF11376.3 gi|298676073|ref|YP_003727823.1| - 6.7e-94 313.9 0.1 8e-94 313.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) DHBP_synthase PF00926.14 gi|298676074|ref|YP_003727824.1| - 1.4e-63 213.6 0.0 1.7e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|298676075|ref|YP_003727825.1| - 1.1e-45 154.1 0.0 1.7e-45 153.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR PF01047.17 gi|298676075|ref|YP_003727825.1| - 0.0058 16.3 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|298676075|ref|YP_003727825.1| - 0.056 12.8 0.2 0.12 11.8 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fibrillarin PF01269.12 gi|298676076|ref|YP_003727826.1| - 4.1e-84 281.0 0.1 4.5e-84 280.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCD14 PF08704.5 gi|298676076|ref|YP_003727826.1| - 0.1 12.0 0.1 0.27 10.6 0.1 1.5 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.13 gi|298676077|ref|YP_003727827.1| - 8.6e-49 164.6 0.0 1.4e-48 163.9 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|298676077|ref|YP_003727827.1| - 6.7e-13 48.2 0.0 6.7e-13 48.2 0.0 2.3 3 0 0 3 3 3 1 NOSIC (NUC001) domain GHMP_kinases_N PF00288.21 gi|298676078|ref|YP_003727828.1| - 3.9e-09 36.4 0.5 9.5e-09 35.2 0.4 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|298676078|ref|YP_003727828.1| - 4.7e-08 33.1 0.0 1.3e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal DUF2953 PF11167.3 gi|298676079|ref|YP_003727829.1| - 7.4e-10 38.5 0.0 2.5e-09 36.8 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2953) 7tm_1 PF00001.16 gi|298676079|ref|YP_003727829.1| - 1.2 8.2 6.2 7 5.7 1.3 2.1 2 0 0 2 2 2 0 7 transmembrane receptor (rhodopsin family) Spore_YtfJ PF09579.5 gi|298676080|ref|YP_003727830.1| - 4.4e-19 68.1 7.0 5.6e-19 67.7 4.9 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) Helicase_C_2 PF13307.1 gi|298676081|ref|YP_003727831.1| - 1.5e-27 96.5 0.0 6.3e-27 94.5 0.0 2.1 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|298676081|ref|YP_003727831.1| - 2.9e-20 72.3 4.0 3.6e-19 68.8 2.8 2.2 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|298676081|ref|YP_003727831.1| - 1e-07 31.5 1.1 6.5e-05 22.4 0.1 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|298676081|ref|YP_003727831.1| - 1.6e-05 24.2 0.4 0.0003 20.0 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein ResIII PF04851.10 gi|298676081|ref|YP_003727831.1| - 3.6e-05 23.6 7.5 0.00031 20.6 5.2 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Zot PF05707.7 gi|298676081|ref|YP_003727831.1| - 0.00031 20.2 0.5 0.025 14.0 0.0 2.8 2 1 0 2 2 2 1 Zonular occludens toxin (Zot) DUF2075 PF09848.4 gi|298676081|ref|YP_003727831.1| - 0.00044 19.3 0.4 0.048 12.6 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.1 gi|298676081|ref|YP_003727831.1| - 0.0087 14.8 0.0 0.029 13.1 0.0 1.8 2 0 0 2 2 2 1 P-loop containing NTP hydrolase pore-1 AAA_30 PF13604.1 gi|298676081|ref|YP_003727831.1| - 0.0095 15.5 0.1 0.043 13.3 0.0 2.1 3 0 0 3 3 3 1 AAA domain DUF3848 PF12959.2 gi|298676081|ref|YP_003727831.1| - 0.013 15.4 0.0 0.04 13.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3848) KaiC PF06745.8 gi|298676081|ref|YP_003727831.1| - 0.026 13.6 0.0 0.061 12.4 0.0 1.7 1 0 0 1 1 1 0 KaiC ArsA_ATPase PF02374.10 gi|298676081|ref|YP_003727831.1| - 0.031 13.3 0.1 0.07 12.1 0.1 1.6 1 0 0 1 1 1 0 Anion-transporting ATPase DUF3110 PF11360.3 gi|298676081|ref|YP_003727831.1| - 0.039 13.7 0.0 0.18 11.6 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3110) AAA_22 PF13401.1 gi|298676081|ref|YP_003727831.1| - 0.047 13.8 0.1 22 5.2 0.0 2.9 2 1 0 2 2 2 0 AAA domain WGG PF10273.4 gi|298676081|ref|YP_003727831.1| - 0.048 13.7 0.0 1.6 8.8 0.0 3.4 2 1 0 2 2 2 0 Pre-rRNA-processing protein TSR2 HK PF02110.10 gi|298676081|ref|YP_003727831.1| - 0.055 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family AAA PF00004.24 gi|298676081|ref|YP_003727831.1| - 0.11 12.6 4.5 6.6 6.9 0.0 3.7 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|298676081|ref|YP_003727831.1| - 0.12 11.7 0.1 9.6 5.5 0.0 2.7 3 0 0 3 3 2 0 AAA domain Fer4 PF00037.22 gi|298676082|ref|YP_003727832.1| - 3.7e-16 57.9 20.5 1.4e-08 33.9 4.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|298676082|ref|YP_003727832.1| - 1.6e-12 47.0 23.8 2.3e-09 36.8 8.9 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298676082|ref|YP_003727832.1| - 9.7e-12 44.2 18.8 2.1e-06 27.3 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|298676082|ref|YP_003727832.1| - 1.2e-11 44.7 13.4 1.4e-11 44.5 9.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298676082|ref|YP_003727832.1| - 5.4e-10 39.8 11.1 9.5e-05 23.0 0.7 2.0 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|298676082|ref|YP_003727832.1| - 9e-10 38.6 15.0 2.5e-09 37.2 10.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|298676082|ref|YP_003727832.1| - 5e-09 35.8 16.1 6.6e-08 32.2 11.1 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|298676082|ref|YP_003727832.1| - 1.6e-08 34.1 14.0 0.00032 20.7 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|298676082|ref|YP_003727832.1| - 2.2e-08 33.5 18.0 0.00013 21.6 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298676082|ref|YP_003727832.1| - 2.4e-06 27.4 13.6 8.8e-06 25.6 9.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|298676082|ref|YP_003727832.1| - 7.5e-06 26.1 21.0 0.0041 17.5 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298676082|ref|YP_003727832.1| - 1e-05 25.8 18.2 0.0016 18.7 3.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|298676082|ref|YP_003727832.1| - 1.2e-05 25.1 5.7 1.2e-05 25.1 3.9 1.0 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298676082|ref|YP_003727832.1| - 5.2e-05 23.5 12.5 0.011 16.0 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|298676082|ref|YP_003727832.1| - 0.00086 19.8 18.1 0.028 14.9 12.5 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|298676082|ref|YP_003727832.1| - 0.071 13.5 21.6 0.25 11.7 4.2 3.1 2 2 2 4 4 4 0 4Fe-4S single cluster domain P12 PF12669.2 gi|298676082|ref|YP_003727832.1| - 0.47 10.6 5.7 2.2 8.5 0.6 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family Stc1 PF12898.2 gi|298676082|ref|YP_003727832.1| - 1.8 8.6 5.5 2.2 8.3 3.8 1.1 1 0 0 1 1 1 0 Stc1 domain Fer4_20 PF14691.1 gi|298676082|ref|YP_003727832.1| - 6.8 6.3 11.2 4.1 7.0 1.9 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Semialdhyde_dh PF01118.19 gi|298676083|ref|YP_003727833.1| - 8.4e-34 116.4 0.0 1.2e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|298676083|ref|YP_003727833.1| - 1e-33 116.7 0.0 1.7e-33 116.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.17 gi|298676083|ref|YP_003727833.1| - 0.0037 17.7 0.0 0.0065 16.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DXP_reductoisom PF02670.11 gi|298676083|ref|YP_003727833.1| - 0.0059 17.1 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|298676083|ref|YP_003727833.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|298676083|ref|YP_003727833.1| - 0.039 13.9 0.1 0.083 12.8 0.1 1.5 1 1 0 1 1 1 0 NADH(P)-binding Saccharop_dh PF03435.13 gi|298676083|ref|YP_003727833.1| - 0.068 12.1 0.0 0.2 10.5 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase AA_kinase PF00696.23 gi|298676084|ref|YP_003727834.1| - 1.1e-30 106.9 0.2 1.4e-30 106.5 0.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family SKI PF01202.17 gi|298676084|ref|YP_003727834.1| - 0.11 12.3 0.0 1.8 8.4 0.0 2.4 1 1 1 2 2 2 0 Shikimate kinase CbiZ PF01955.13 gi|298676085|ref|YP_003727835.1| - 2.3e-49 167.7 0.1 2.8e-49 167.5 0.1 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase JmjN PF02375.12 gi|298676085|ref|YP_003727835.1| - 0.16 11.4 1.7 0.2 11.2 0.1 1.9 2 0 0 2 2 2 0 jmjN domain AP_endonuc_2 PF01261.19 gi|298676086|ref|YP_003727836.1| - 9.1e-19 67.5 0.0 2.8e-18 65.9 0.0 1.8 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_20 PF12840.2 gi|298676087|ref|YP_003727837.1| - 4.1e-09 36.1 0.0 1.2e-08 34.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|298676087|ref|YP_003727837.1| - 3.5e-08 32.9 0.5 9e-08 31.6 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|298676087|ref|YP_003727837.1| - 5.5e-05 22.7 0.2 0.00022 20.8 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|298676087|ref|YP_003727837.1| - 0.0012 18.1 0.0 0.0031 16.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|298676087|ref|YP_003727837.1| - 0.0068 16.4 0.2 0.071 13.1 0.0 2.4 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|298676087|ref|YP_003727837.1| - 0.0097 15.7 0.2 0.069 12.9 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|298676087|ref|YP_003727837.1| - 0.011 15.4 0.1 0.024 14.2 0.1 1.6 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|298676087|ref|YP_003727837.1| - 0.043 13.5 0.1 1.1 9.0 0.1 2.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB PfkB PF00294.19 gi|298676087|ref|YP_003727837.1| - 0.051 12.6 0.1 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 pfkB family carbohydrate kinase Rrf2 PF02082.15 gi|298676087|ref|YP_003727837.1| - 0.08 13.0 0.1 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator DUF4430 PF14478.1 gi|298676087|ref|YP_003727837.1| - 0.084 12.9 1.8 0.74 9.9 1.3 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4430) MarR_2 PF12802.2 gi|298676087|ref|YP_003727837.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.22 gi|298676087|ref|YP_003727837.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family MutS_V PF00488.16 gi|298676088|ref|YP_003727838.1| - 2.6e-13 49.9 0.0 4.8e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH_2 PF12826.2 gi|298676088|ref|YP_003727838.1| - 0.00091 19.0 0.1 0.0026 17.6 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|298676088|ref|YP_003727838.1| - 0.0042 17.2 0.0 0.013 15.6 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|298676088|ref|YP_003727838.1| - 0.0045 17.2 2.2 3 8.1 0.0 4.3 3 2 1 4 4 4 1 5'-3' exonuclease, C-terminal SAM fold AAA PF00004.24 gi|298676088|ref|YP_003727838.1| - 0.014 15.5 0.0 0.034 14.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HHH PF00633.18 gi|298676088|ref|YP_003727838.1| - 0.092 12.4 0.0 14 5.5 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif IGPD PF00475.13 gi|298676089|ref|YP_003727839.1| - 1.2e-64 216.5 2.1 1.4e-64 216.2 1.4 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|298676090|ref|YP_003727840.1| - 2.5e-75 252.6 2.9 2.8e-75 252.5 2.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|298676090|ref|YP_003727840.1| - 3e-10 39.4 0.2 0.00014 20.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|298676090|ref|YP_003727840.1| - 1.1e-08 34.4 1.0 8.6e-07 28.1 0.1 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|298676090|ref|YP_003727840.1| - 2.4e-08 33.5 3.5 6.6e-05 22.2 0.1 2.1 2 0 0 2 2 2 2 PcrB family ThiG PF05690.9 gi|298676090|ref|YP_003727840.1| - 3e-07 29.7 1.3 0.011 14.7 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|298676090|ref|YP_003727840.1| - 2.2e-06 27.0 1.0 2.6e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase TMP-TENI PF02581.12 gi|298676090|ref|YP_003727840.1| - 6.1e-06 25.4 1.0 0.00027 20.0 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI NanE PF04131.9 gi|298676090|ref|YP_003727840.1| - 6.8e-06 25.1 0.3 0.04 12.8 0.1 2.1 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|298676090|ref|YP_003727840.1| - 4.6e-05 22.4 0.3 0.21 10.3 0.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase DUF561 PF04481.7 gi|298676090|ref|YP_003727840.1| - 0.00022 20.2 0.1 0.00035 19.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|298676090|ref|YP_003727840.1| - 0.00036 19.5 3.3 0.0022 16.9 2.2 1.8 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain IGPS PF00218.16 gi|298676090|ref|YP_003727840.1| - 0.00059 18.9 0.3 0.01 14.8 0.0 2.1 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|298676090|ref|YP_003727840.1| - 0.00062 18.3 1.1 0.12 10.8 0.1 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain G3P_antiterm PF04309.7 gi|298676090|ref|YP_003727840.1| - 0.0089 15.0 1.3 0.86 8.6 0.1 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NAD_binding_3 PF03447.11 gi|298676090|ref|YP_003727840.1| - 0.022 15.1 0.0 0.11 12.9 0.0 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Glu_synthase PF01645.12 gi|298676090|ref|YP_003727840.1| - 0.047 12.6 0.4 0.14 11.0 0.0 1.7 2 0 0 2 2 2 0 Conserved region in glutamate synthase HisG PF01634.13 gi|298676091|ref|YP_003727841.1| - 2.2e-49 167.1 0.4 3.2e-49 166.6 0.3 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|298676091|ref|YP_003727841.1| - 1.7e-27 95.1 0.5 5e-27 93.6 0.1 2.0 2 0 0 2 2 2 1 HisG, C-terminal domain SBP_bac_3 PF00497.15 gi|298676091|ref|YP_003727841.1| - 6.1e-05 22.3 0.0 9e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|298676091|ref|YP_003727841.1| - 0.001 18.6 0.1 0.025 14.1 0.0 2.2 1 1 1 2 2 2 1 NMT1/THI5 like Response_reg PF00072.19 gi|298676092|ref|YP_003727842.1| - 1.9e-29 101.9 0.2 2.1e-29 101.7 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CbiQ PF02361.11 gi|298676093|ref|YP_003727843.1| - 1.8e-31 109.4 9.4 2.2e-31 109.2 6.5 1.0 1 0 0 1 1 1 1 Cobalt transport protein Met_10 PF02475.11 gi|298676094|ref|YP_003727844.1| - 1.3e-56 191.4 0.3 1.6e-56 191.1 0.2 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|298676094|ref|YP_003727844.1| - 5.9e-10 39.1 0.0 1.1e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|298676094|ref|YP_003727844.1| - 3e-08 34.2 0.0 6.2e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|298676094|ref|YP_003727844.1| - 1.3e-07 31.4 0.0 2.1e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|298676094|ref|YP_003727844.1| - 1.4e-05 24.7 0.1 2.8e-05 23.7 0.0 1.5 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|298676094|ref|YP_003727844.1| - 6.9e-05 22.3 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PRMT5 PF05185.11 gi|298676094|ref|YP_003727844.1| - 0.0018 17.3 0.0 0.0026 16.7 0.0 1.2 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase Methyltransf_21 PF05050.7 gi|298676094|ref|YP_003727844.1| - 0.013 15.5 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase FkbM domain HYR PF02494.11 gi|298676095|ref|YP_003727845.1| - 0.22 11.5 1.0 0.57 10.2 0.2 1.8 1 1 1 2 2 2 0 HYR domain Myosin_N PF02736.14 gi|298676095|ref|YP_003727845.1| - 0.58 9.8 5.6 0.11 12.2 0.8 2.0 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Methyltransf_11 PF08241.7 gi|298676096|ref|YP_003727846.1| - 5.3e-19 68.5 0.0 8.1e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|298676096|ref|YP_003727846.1| - 6.9e-19 68.1 0.0 8.5e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|298676096|ref|YP_003727846.1| - 7.4e-19 67.8 0.0 9.5e-19 67.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|298676096|ref|YP_003727846.1| - 9.8e-14 51.6 0.0 1.8e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|298676096|ref|YP_003727846.1| - 3.9e-13 49.0 0.1 2.4e-12 46.5 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|298676096|ref|YP_003727846.1| - 7e-13 49.1 0.0 1e-12 48.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|298676096|ref|YP_003727846.1| - 1.6e-10 41.2 0.0 2.5e-10 40.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|298676096|ref|YP_003727846.1| - 3.7e-07 30.1 0.0 5e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|298676096|ref|YP_003727846.1| - 1.3e-05 24.6 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|298676096|ref|YP_003727846.1| - 1.9e-05 23.8 0.0 3.7e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|298676096|ref|YP_003727846.1| - 2.3e-05 23.6 0.0 3.5e-05 23.0 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|298676096|ref|YP_003727846.1| - 2.6e-05 23.6 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DREV PF05219.7 gi|298676096|ref|YP_003727846.1| - 8.2e-05 21.5 0.0 0.00015 20.7 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.12 gi|298676096|ref|YP_003727846.1| - 0.00013 21.0 0.0 0.0002 20.4 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase PCMT PF01135.14 gi|298676096|ref|YP_003727846.1| - 0.00037 20.0 0.0 0.00053 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF938 PF06080.7 gi|298676096|ref|YP_003727846.1| - 0.00055 19.5 0.0 0.00083 18.9 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF938) PrmA PF06325.8 gi|298676096|ref|YP_003727846.1| - 0.0022 17.1 0.0 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|298676096|ref|YP_003727846.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Nif11 PF07862.6 gi|298676096|ref|YP_003727846.1| - 0.031 14.2 0.1 0.52 10.3 0.0 2.5 2 1 0 2 2 2 0 Nitrogen fixation protein of unknown function UPF0020 PF01170.13 gi|298676096|ref|YP_003727846.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF148 PF02520.12 gi|298676096|ref|YP_003727846.1| - 0.15 11.8 1.0 0.57 9.9 0.7 2.1 1 1 0 1 1 1 0 Domain of unknown function DUF148 DUF1947 PF09183.5 gi|298676096|ref|YP_003727846.1| - 0.16 11.7 1.3 8.2 6.2 0.0 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF1947) BPD_transp_1 PF00528.17 gi|298676097|ref|YP_003727847.1| - 3e-22 79.0 14.5 3e-22 79.0 10.0 1.3 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|298676098|ref|YP_003727848.1| - 5e-26 91.3 14.6 6.7e-26 90.9 10.1 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|298676099|ref|YP_003727849.1| - 1.6e-34 119.1 0.0 2.6e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|298676099|ref|YP_003727849.1| - 5.5e-13 49.5 0.6 3.2e-10 40.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298676099|ref|YP_003727849.1| - 4.7e-05 23.4 0.1 0.00024 21.1 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain CBS PF00571.23 gi|298676099|ref|YP_003727849.1| - 0.00028 20.6 0.0 0.39 10.5 0.0 2.7 2 0 0 2 2 2 2 CBS domain AAA_19 PF13245.1 gi|298676099|ref|YP_003727849.1| - 0.00094 18.8 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_29 PF13555.1 gi|298676099|ref|YP_003727849.1| - 0.001 18.5 0.0 0.002 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|298676099|ref|YP_003727849.1| - 0.001 18.0 0.0 0.0017 17.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|298676099|ref|YP_003727849.1| - 0.0011 18.1 0.0 0.0025 16.9 0.0 1.6 2 0 0 2 2 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|298676099|ref|YP_003727849.1| - 0.0013 19.1 0.8 0.0025 18.1 0.2 1.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|298676099|ref|YP_003727849.1| - 0.0014 18.3 0.0 0.0031 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.1 gi|298676099|ref|YP_003727849.1| - 0.0014 18.2 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|298676099|ref|YP_003727849.1| - 0.0015 18.6 0.0 0.0034 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|298676099|ref|YP_003727849.1| - 0.0035 16.8 0.0 0.0056 16.1 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|298676099|ref|YP_003727849.1| - 0.0053 15.9 0.0 0.01 15.0 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|298676099|ref|YP_003727849.1| - 0.008 16.0 0.0 0.017 14.9 0.0 1.5 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|298676099|ref|YP_003727849.1| - 0.0095 15.0 0.0 0.019 14.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|298676099|ref|YP_003727849.1| - 0.012 16.3 0.0 0.043 14.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|298676099|ref|YP_003727849.1| - 0.014 14.1 0.0 0.026 13.2 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit AAA_10 PF12846.2 gi|298676099|ref|YP_003727849.1| - 0.014 14.8 0.0 0.1 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|298676099|ref|YP_003727849.1| - 0.018 14.9 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|298676099|ref|YP_003727849.1| - 0.019 14.6 0.0 0.057 13.1 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|298676099|ref|YP_003727849.1| - 0.024 14.3 0.0 0.14 11.8 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|298676099|ref|YP_003727849.1| - 0.025 14.9 0.1 0.16 12.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|298676099|ref|YP_003727849.1| - 0.029 14.0 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|298676099|ref|YP_003727849.1| - 0.046 13.9 0.0 0.12 12.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|298676099|ref|YP_003727849.1| - 0.075 12.4 0.0 0.2 11.1 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|298676099|ref|YP_003727849.1| - 0.075 12.6 0.1 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|298676099|ref|YP_003727849.1| - 0.089 12.2 0.0 0.31 10.4 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|298676099|ref|YP_003727849.1| - 0.11 11.9 0.0 0.88 9.0 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation OpuAC PF04069.7 gi|298676100|ref|YP_003727850.1| - 7.6e-62 208.9 1.4 1.1e-61 208.4 1.0 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.15 gi|298676100|ref|YP_003727850.1| - 0.021 14.0 0.1 0.65 9.2 0.0 2.2 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 TPP_enzyme_N PF02776.13 gi|298676101|ref|YP_003727851.1| - 1e-51 174.8 0.0 3.9e-51 172.9 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|298676101|ref|YP_003727851.1| - 1.5e-39 135.0 0.1 2.7e-39 134.1 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|298676101|ref|YP_003727851.1| - 2.1e-30 105.2 0.0 8.2e-30 103.3 0.0 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain DXP_synthase_N PF13292.1 gi|298676101|ref|YP_003727851.1| - 0.00044 19.2 0.6 0.0011 18.0 0.0 2.0 3 0 0 3 3 3 1 1-deoxy-D-xylulose-5-phosphate synthase CO_dh PF02552.11 gi|298676101|ref|YP_003727851.1| - 0.0088 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Aldedh PF00171.17 gi|298676102|ref|YP_003727852.1| - 1.1e-148 495.4 0.1 1.2e-148 495.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|298676102|ref|YP_003727852.1| - 0.0017 17.1 0.1 0.0061 15.3 0.0 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Adipogenin PF15202.1 gi|298676103|ref|YP_003727853.1| - 0.67 9.8 2.5 0.72 9.7 1.7 1.2 1 0 0 1 1 1 0 Adipogenin Aldedh PF00171.17 gi|298676104|ref|YP_003727854.1| - 7e-143 476.3 0.0 7.8e-143 476.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|298676104|ref|YP_003727854.1| - 0.00036 19.3 0.1 0.0016 17.2 0.1 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) YbjM PF11045.3 gi|298676106|ref|YP_003727856.1| - 1.1 9.0 5.7 2.4 7.9 3.9 1.7 1 1 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae IF-2B PF01008.12 gi|298676107|ref|YP_003727857.1| - 6.9e-85 284.4 3.6 7.9e-85 284.2 2.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Atg14 PF10186.4 gi|298676109|ref|YP_003727859.1| - 0.0012 17.8 6.4 0.0012 17.8 4.5 3.3 3 0 0 3 3 3 2 UV radiation resistance protein and autophagy-related subunit 14 AAA_13 PF13166.1 gi|298676109|ref|YP_003727859.1| - 0.0044 15.5 51.7 0.061 11.7 14.8 2.1 1 1 1 2 2 2 2 AAA domain DUF4315 PF14193.1 gi|298676109|ref|YP_003727859.1| - 0.0095 15.8 1.6 0.0095 15.8 1.1 5.5 5 1 1 6 6 4 1 Domain of unknown function (DUF4315) Occludin_ELL PF07303.8 gi|298676109|ref|YP_003727859.1| - 0.011 16.3 2.7 0.011 16.3 1.9 4.7 3 1 2 5 5 5 0 Occludin homology domain WXG100 PF06013.7 gi|298676109|ref|YP_003727859.1| - 0.088 12.8 10.8 1.5 8.8 0.0 5.1 3 1 1 4 4 4 0 Proteins of 100 residues with WXG Reo_sigmaC PF04582.7 gi|298676109|ref|YP_003727859.1| - 0.12 11.4 14.8 0.022 13.9 1.2 3.4 3 1 1 4 4 4 0 Reovirus sigma C capsid protein Allexi_40kDa PF05549.6 gi|298676109|ref|YP_003727859.1| - 0.13 11.5 26.5 0.31 10.2 0.3 3.6 2 1 1 4 4 4 0 Allexivirus 40kDa protein Baculo_PEP_C PF04513.7 gi|298676109|ref|YP_003727859.1| - 0.62 9.8 26.1 3.3 7.5 1.9 4.9 1 1 5 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus HemX PF04375.9 gi|298676109|ref|YP_003727859.1| - 0.78 8.2 20.9 0.032 12.8 4.5 2.7 3 0 0 3 3 3 0 HemX Mnd1 PF03962.10 gi|298676109|ref|YP_003727859.1| - 0.98 9.0 43.3 0.26 10.9 5.2 4.5 2 1 2 4 4 4 0 Mnd1 family DUF4446 PF14584.1 gi|298676109|ref|YP_003727859.1| - 1.5 8.6 27.0 0.66 9.7 2.5 4.6 3 1 1 4 4 4 0 Protein of unknown function (DUF4446) DUF1664 PF07889.7 gi|298676109|ref|YP_003727859.1| - 1.9 8.3 34.4 0.11 12.3 2.8 5.3 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|298676109|ref|YP_003727859.1| - 4.3 7.2 21.8 0.96 9.3 1.8 4.4 4 1 2 6 6 5 0 Bacterial protein of unknown function (DUF948) DUF2730 PF10805.3 gi|298676109|ref|YP_003727859.1| - 4.7 7.0 24.3 1.6 8.5 2.5 5.0 3 2 2 5 5 5 0 Protein of unknown function (DUF2730) CENP-F_leu_zip PF10473.4 gi|298676109|ref|YP_003727859.1| - 8.5 6.2 53.9 2.3 8.0 11.7 4.4 2 1 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2203 PF09969.4 gi|298676109|ref|YP_003727859.1| - 8.9 6.5 24.8 1.8 8.7 1.4 4.7 3 1 1 4 4 4 0 Uncharacterized conserved protein (DUF2203) Peptidase_S49 PF01343.13 gi|298676111|ref|YP_003727861.1| - 2.7e-43 147.4 0.0 3.9e-43 146.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|298676111|ref|YP_003727861.1| - 4.8e-05 23.1 1.0 0.0043 16.7 0.5 2.2 2 0 0 2 2 2 1 Clp protease Peptidase_S8 PF00082.17 gi|298676111|ref|YP_003727861.1| - 0.02 14.0 0.9 0.033 13.3 0.6 1.4 1 1 0 1 1 1 0 Subtilase family Peripla_BP_4 PF13407.1 gi|298676111|ref|YP_003727861.1| - 0.023 14.0 0.2 0.04 13.2 0.2 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain RSF PF14876.1 gi|298676111|ref|YP_003727861.1| - 0.054 12.2 0.9 0.085 11.6 0.6 1.2 1 0 0 1 1 1 0 Respiratory growth transcriptional regulator Sigma_reg_N PF13800.1 gi|298676111|ref|YP_003727861.1| - 0.056 13.4 0.1 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma factor regulator N-terminal tRNA-synt_1g PF09334.6 gi|298676112|ref|YP_003727862.1| - 7.8e-145 482.4 1.6 1.2e-144 481.8 1.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|298676112|ref|YP_003727862.1| - 3.7e-25 87.5 1.4 8.1e-25 86.4 1.0 1.6 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|298676112|ref|YP_003727862.1| - 5.6e-19 67.5 2.0 1.6e-08 33.0 0.4 4.1 2 2 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|298676112|ref|YP_003727862.1| - 2.7e-14 53.1 0.7 5.6e-14 52.1 0.5 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|298676112|ref|YP_003727862.1| - 8.3e-14 51.4 5.2 2.8e-10 39.8 0.1 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|298676112|ref|YP_003727862.1| - 0.00016 20.4 0.1 0.035 12.7 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|298676112|ref|YP_003727862.1| - 0.0048 15.7 0.5 0.92 8.2 0.0 2.5 1 1 1 2 2 2 2 tRNA synthetases class I (R) DZR PF12773.2 gi|298676112|ref|YP_003727862.1| - 4 7.3 8.4 21 4.9 5.8 2.1 1 1 0 1 1 1 0 Double zinc ribbon CYTH PF01928.16 gi|298676113|ref|YP_003727863.1| - 1.4e-39 135.7 3.9 1.5e-39 135.5 2.7 1.0 1 0 0 1 1 1 1 CYTH domain Med20 PF08612.6 gi|298676113|ref|YP_003727863.1| - 0.00054 19.1 0.3 0.0012 18.0 0.1 1.6 1 1 1 2 2 2 1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex Rootletin PF15035.1 gi|298676113|ref|YP_003727863.1| - 0.034 14.1 0.1 0.074 13.0 0.1 1.7 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF35 PF01796.12 gi|298676114|ref|YP_003727864.1| - 5.5e-17 61.7 0.0 7.4e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|298676114|ref|YP_003727864.1| - 3e-09 36.5 0.8 4.4e-09 35.9 0.5 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.7 gi|298676114|ref|YP_003727864.1| - 0.01 15.6 0.3 0.013 15.2 0.2 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Laminin_EGF PF00053.19 gi|298676114|ref|YP_003727864.1| - 0.057 13.3 1.8 0.1 12.5 1.3 1.4 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) zf-C3HC4_3 PF13920.1 gi|298676114|ref|YP_003727864.1| - 0.094 12.3 1.7 0.15 11.7 1.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Thiolase_C PF02803.13 gi|298676115|ref|YP_003727865.1| - 2.6e-12 46.2 1.1 3e-11 42.7 0.7 2.6 1 1 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|298676115|ref|YP_003727865.1| - 2.6e-11 43.0 0.7 9.9e-10 37.8 0.1 2.4 2 1 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|298676115|ref|YP_003727865.1| - 7.4e-07 28.9 6.0 8.7e-06 25.3 4.2 2.3 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|298676115|ref|YP_003727865.1| - 0.12 12.2 2.5 1.2 9.0 0.0 3.0 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III_C PF08541.5 gi|298676116|ref|YP_003727866.1| - 4.2e-10 39.4 0.0 1.1e-09 38.1 0.0 1.8 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|298676116|ref|YP_003727866.1| - 3.9e-06 26.5 0.0 4.8e-05 22.9 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|298676116|ref|YP_003727866.1| - 0.069 12.7 0.2 0.099 12.1 0.1 1.3 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal HTH_3 PF01381.17 gi|298676117|ref|YP_003727867.1| - 3.2e-08 33.2 0.0 8.2e-08 31.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|298676117|ref|YP_003727867.1| - 1.7e-06 27.9 0.0 5.1e-06 26.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|298676117|ref|YP_003727867.1| - 0.017 15.2 0.0 0.035 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3804 PF12707.2 gi|298676118|ref|YP_003727868.1| - 0.058 12.9 0.1 0.076 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) OrfB_Zn_ribbon PF07282.6 gi|298676119|ref|YP_003727869.1| - 5.2e-25 86.9 1.7 1.5e-24 85.4 0.8 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298676119|ref|YP_003727869.1| - 5.6e-16 58.6 2.4 8e-16 58.1 1.4 1.5 1 1 0 1 1 1 1 Probable transposase UPF0547 PF10571.4 gi|298676119|ref|YP_003727869.1| - 0.065 12.9 0.9 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.8 gi|298676119|ref|YP_003727869.1| - 0.12 11.8 5.4 0.4 10.1 3.7 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|298676119|ref|YP_003727869.1| - 0.42 9.9 1.9 18 4.7 0.0 2.4 1 1 0 2 2 2 0 TFIIB zinc-binding Tnp_zf-ribbon_2 PF13842.1 gi|298676119|ref|YP_003727869.1| - 0.48 10.8 5.6 1.1 9.6 3.9 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon zinc_ribbon_4 PF13717.1 gi|298676119|ref|YP_003727869.1| - 1 9.0 4.3 2.8 7.7 1.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PAPS_reduct PF01507.14 gi|298676120|ref|YP_003727870.1| - 2.6e-46 157.6 0.0 4.6e-46 156.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|298676120|ref|YP_003727870.1| - 1.3e-17 63.2 0.2 2.9e-17 62.1 0.1 1.6 1 0 0 1 1 1 1 PUA domain Fer4_9 PF13187.1 gi|298676120|ref|YP_003727870.1| - 4.3e-07 30.0 9.7 4.3e-07 30.0 6.7 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|298676120|ref|YP_003727870.1| - 5e-07 29.9 14.4 5e-07 29.9 10.0 2.2 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|298676120|ref|YP_003727870.1| - 1.7e-06 27.7 9.4 1.7e-06 27.7 6.5 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|298676120|ref|YP_003727870.1| - 3.5e-06 26.3 23.9 8.8e-06 25.1 2.4 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|298676120|ref|YP_003727870.1| - 8.1e-05 22.4 23.9 0.00046 19.9 10.1 3.1 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|298676120|ref|YP_003727870.1| - 0.0017 18.7 11.8 0.028 14.7 0.3 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|298676120|ref|YP_003727870.1| - 0.002 17.9 22.4 0.014 15.2 2.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|298676120|ref|YP_003727870.1| - 0.0053 17.1 14.3 0.053 13.9 1.0 3.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|298676120|ref|YP_003727870.1| - 0.038 14.7 2.4 0.038 14.7 1.7 3.9 2 2 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|298676120|ref|YP_003727870.1| - 0.2 12.3 25.2 0.44 11.2 3.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|298676120|ref|YP_003727870.1| - 0.93 9.5 23.3 0.025 14.5 9.3 3.1 3 1 1 4 4 3 0 4Fe-4S dicluster domain TPR_12 PF13424.1 gi|298676121|ref|YP_003727871.1| - 2.8e-11 43.1 11.0 2.4e-09 37.0 3.0 2.0 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|298676121|ref|YP_003727871.1| - 2.3e-10 39.9 5.2 4.5e-10 39.0 3.6 1.5 1 0 0 1 1 1 1 TPR repeat TPR_8 PF13181.1 gi|298676121|ref|YP_003727871.1| - 5.1e-10 38.3 6.7 0.00015 21.2 0.5 2.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|298676121|ref|YP_003727871.1| - 2.6e-09 36.2 5.0 0.00063 19.2 0.6 2.6 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|298676121|ref|YP_003727871.1| - 4.2e-09 35.6 7.0 0.00014 21.5 0.5 2.6 3 0 0 3 3 2 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|298676121|ref|YP_003727871.1| - 1.4e-06 28.0 2.9 5e-05 23.1 0.1 2.9 2 1 1 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|298676121|ref|YP_003727871.1| - 2e-06 27.9 0.4 0.0053 17.2 0.1 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|298676121|ref|YP_003727871.1| - 2.1e-06 28.2 1.9 3.1e-06 27.6 0.6 1.8 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_5 PF12688.2 gi|298676121|ref|YP_003727871.1| - 3.2e-05 23.9 1.0 0.45 10.5 0.0 2.8 2 1 1 3 3 3 2 Tetratrico peptide repeat TPR_19 PF14559.1 gi|298676121|ref|YP_003727871.1| - 3.3e-05 24.1 1.6 4.6e-05 23.6 0.1 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|298676121|ref|YP_003727871.1| - 6.1e-05 22.5 1.4 0.051 13.3 0.2 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|298676121|ref|YP_003727871.1| - 0.0002 21.6 0.6 0.26 11.8 0.1 2.7 2 1 0 2 2 2 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|298676121|ref|YP_003727871.1| - 0.00055 20.0 3.5 0.0013 18.8 2.5 1.7 1 1 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_10 PF13374.1 gi|298676121|ref|YP_003727871.1| - 0.002 17.9 1.6 0.28 11.1 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat Hemocyanin_M PF00372.14 gi|298676121|ref|YP_003727871.1| - 0.013 14.7 0.1 0.017 14.4 0.1 1.2 1 0 0 1 1 1 0 Hemocyanin, copper containing domain DUF627 PF04781.7 gi|298676121|ref|YP_003727871.1| - 0.046 13.3 0.9 0.64 9.6 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF627) DUF3366 PF11846.3 gi|298676121|ref|YP_003727871.1| - 0.062 13.1 0.3 0.5 10.2 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3366) TPR_4 PF07721.9 gi|298676121|ref|YP_003727871.1| - 0.12 12.8 0.1 0.38 11.3 0.0 1.8 2 0 0 2 2 1 0 Tetratricopeptide repeat AICARFT_IMPCHas PF01808.13 gi|298676122|ref|YP_003727872.1| - 2.7e-90 302.6 0.0 3.6e-90 302.2 0.0 1.2 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme MGS PF02142.17 gi|298676122|ref|YP_003727872.1| - 6.2e-28 96.5 0.1 1.4e-27 95.4 0.1 1.6 1 0 0 1 1 1 1 MGS-like domain MgsA_C PF12002.3 gi|298676122|ref|YP_003727872.1| - 0.044 13.4 0.0 0.17 11.5 0.0 2.0 1 0 0 1 1 1 0 MgsA AAA+ ATPase C terminal NSP2_assoc PF14758.1 gi|298676122|ref|YP_003727872.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.3 1 0 0 1 1 1 0 Non-essential region of nsp2 of arterivirus polyprotein DUF1724 PF08350.5 gi|298676123|ref|YP_003727873.1| - 2.1e-23 81.6 0.3 4.5e-23 80.5 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|298676123|ref|YP_003727873.1| - 2.2e-05 24.0 1.0 3.6e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|298676123|ref|YP_003727873.1| - 0.00033 20.2 0.0 0.00069 19.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|298676123|ref|YP_003727873.1| - 0.0007 19.8 0.0 0.002 18.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HemN_C PF06969.11 gi|298676123|ref|YP_003727873.1| - 0.0012 18.8 0.1 0.011 15.8 0.0 2.4 3 0 0 3 3 3 1 HemN C-terminal domain MarR PF01047.17 gi|298676123|ref|YP_003727873.1| - 0.0019 17.8 0.0 0.0046 16.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|298676123|ref|YP_003727873.1| - 0.0038 16.9 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|298676123|ref|YP_003727873.1| - 0.0044 16.3 0.0 0.0089 15.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|298676123|ref|YP_003727873.1| - 0.042 13.4 0.3 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 HTH domain UbiA PF01040.13 gi|298676124|ref|YP_003727874.1| - 7.3e-26 90.9 14.2 9.7e-26 90.5 9.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Pyridoxal_deC PF00282.14 gi|298676126|ref|YP_003727876.1| - 3.3e-30 104.7 0.0 5.3e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_1_2 PF00155.16 gi|298676126|ref|YP_003727876.1| - 1e-10 41.1 0.0 1.8e-09 37.0 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|298676126|ref|YP_003727876.1| - 1.1e-08 34.2 0.2 6.8e-08 31.6 0.2 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|298676126|ref|YP_003727876.1| - 0.00013 21.2 0.0 0.00016 20.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|298676126|ref|YP_003727876.1| - 0.0019 17.3 0.0 0.003 16.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cdc6_C PF09079.6 gi|298676128|ref|YP_003727877.1| - 4.1e-17 61.6 0.2 8.2e-17 60.7 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|298676128|ref|YP_003727877.1| - 3.5e-12 46.5 0.0 7.4e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|298676128|ref|YP_003727877.1| - 5e-10 39.6 0.0 1.3e-09 38.3 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|298676128|ref|YP_003727877.1| - 1.8e-07 31.1 0.1 3.6e-07 30.1 0.1 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|298676128|ref|YP_003727877.1| - 5.4e-07 29.8 0.0 1.5e-06 28.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|298676128|ref|YP_003727877.1| - 1.2e-05 24.3 0.0 2.3e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.7 gi|298676128|ref|YP_003727877.1| - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_32 PF13654.1 gi|298676128|ref|YP_003727877.1| - 0.0022 16.7 0.2 0.18 10.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain Kinesin PF00225.18 gi|298676128|ref|YP_003727877.1| - 0.0027 16.4 0.0 0.018 13.7 0.0 2.1 2 0 0 2 2 2 1 Kinesin motor domain DUF2075 PF09848.4 gi|298676128|ref|YP_003727877.1| - 0.0033 16.4 0.0 0.0042 16.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|298676128|ref|YP_003727877.1| - 0.0036 17.4 0.2 0.016 15.3 0.1 2.2 1 1 0 1 1 1 1 RNA helicase AAA_5 PF07728.9 gi|298676128|ref|YP_003727877.1| - 0.0043 16.7 0.1 0.6 9.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) PIF1 PF05970.9 gi|298676128|ref|YP_003727877.1| - 0.0073 15.3 0.0 0.016 14.1 0.0 1.7 1 1 1 2 2 2 1 PIF1-like helicase Sigma54_activat PF00158.21 gi|298676128|ref|YP_003727877.1| - 0.0095 15.4 0.0 0.024 14.1 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain ResIII PF04851.10 gi|298676128|ref|YP_003727877.1| - 0.014 15.2 0.0 0.048 13.4 0.0 1.9 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|298676128|ref|YP_003727877.1| - 0.023 13.5 0.0 0.034 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Miro PF08477.8 gi|298676128|ref|YP_003727877.1| - 0.025 15.0 0.0 0.065 13.7 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein DUF508 PF04370.7 gi|298676128|ref|YP_003727877.1| - 0.027 14.0 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF508) KAP_NTPase PF07693.9 gi|298676128|ref|YP_003727877.1| - 0.038 12.9 0.1 0.91 8.4 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain DUF87 PF01935.12 gi|298676128|ref|YP_003727877.1| - 0.04 13.7 0.1 0.22 11.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_2 PF07724.9 gi|298676128|ref|YP_003727877.1| - 0.05 13.5 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|298676128|ref|YP_003727877.1| - 0.056 12.3 0.0 0.096 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.24 gi|298676128|ref|YP_003727877.1| - 0.061 12.8 0.0 0.29 10.6 0.0 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase RuvB_N PF05496.7 gi|298676128|ref|YP_003727877.1| - 0.088 11.8 0.0 3.1 6.7 0.0 2.5 1 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Zeta_toxin PF06414.7 gi|298676128|ref|YP_003727877.1| - 0.11 11.5 0.0 0.22 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF772 PF05598.6 gi|298676129|ref|YP_003727878.1| - 1.3e-19 69.8 0.1 2.4e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.16 gi|298676129|ref|YP_003727878.1| - 4.2e-11 42.8 1.8 1.5e-10 41.0 1.3 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|298676129|ref|YP_003727878.1| - 0.00018 21.1 0.2 0.00043 19.9 0.1 1.6 1 1 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_1_3 PF13612.1 gi|298676129|ref|YP_003727878.1| - 0.00064 19.5 0.3 0.0014 18.3 0.1 1.7 2 0 0 2 2 2 1 Transposase DDE domain Imm35 PF15581.1 gi|298676129|ref|YP_003727878.1| - 0.06 13.3 0.0 0.81 9.7 0.0 2.4 2 0 0 2 2 2 0 Immunity protein 35 CarboxypepD_reg PF13620.1 gi|298676130|ref|YP_003727879.1| - 3.3e-75 248.1 46.3 4.6e-10 39.4 0.8 8.6 8 0 0 8 8 8 8 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|298676130|ref|YP_003727879.1| - 3.5e-60 199.6 79.0 2.1e-11 43.4 1.9 9.0 9 0 0 9 9 9 8 Cna protein B-type domain DUF4480 PF13715.1 gi|298676130|ref|YP_003727879.1| - 4.7e-39 132.3 36.3 6.4e-05 22.9 0.2 8.7 9 0 0 9 9 9 8 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|298676130|ref|YP_003727879.1| - 6.1e-25 87.4 35.9 0.00011 21.9 0.3 8.9 8 1 1 9 9 9 7 Prophage tail fibre N-terminal MG1 PF11974.3 gi|298676130|ref|YP_003727879.1| - 3.3e-23 82.0 7.4 0.0014 19.1 0.0 8.4 8 0 0 8 8 8 6 Alpha-2-macroglobulin MG1 domain Pollen_Ole_e_I PF01190.12 gi|298676130|ref|YP_003727879.1| - 3.1e-13 49.3 13.3 0.81 9.5 0.0 8.6 9 0 0 9 9 9 5 Pollen proteins Ole e I like DUF2012 PF09430.5 gi|298676130|ref|YP_003727879.1| - 9.6e-12 44.8 15.3 1.9 8.3 0.0 8.3 8 0 0 8 8 8 4 Protein of unknown function (DUF2012) DUF1416 PF07210.7 gi|298676130|ref|YP_003727879.1| - 8e-06 25.3 0.8 21 4.8 0.0 6.4 6 0 0 6 6 6 0 Protein of unknown function (DUF1416) PLRV_ORF5 PF01690.12 gi|298676130|ref|YP_003727879.1| - 5.2e-05 22.5 17.8 1.2 8.2 0.8 5.1 5 0 0 5 5 5 3 Potato leaf roll virus readthrough protein Dioxygenase_C PF00775.16 gi|298676130|ref|YP_003727879.1| - 0.00029 20.1 16.6 0.49 9.6 0.0 7.4 8 0 0 8 8 8 1 Dioxygenase DUF2025 PF09634.5 gi|298676130|ref|YP_003727879.1| - 0.0011 18.6 3.1 19 5.0 0.0 5.4 5 0 0 5 5 5 0 Protein of unknown function (DUF2025) DUF4198 PF10670.4 gi|298676130|ref|YP_003727879.1| - 0.056 13.4 9.5 7.6 6.4 0.0 6.3 7 1 1 8 8 8 0 Domain of unknown function (DUF4198) YcxB PF14317.1 gi|298676130|ref|YP_003727879.1| - 0.094 11.9 3.8 25 4.2 0.0 4.5 4 0 0 4 4 4 0 YcxB-like protein fn3_3 PF14686.1 gi|298676130|ref|YP_003727879.1| - 3.6 7.7 29.1 0.84 9.8 0.0 8.2 8 0 0 8 8 8 0 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.1 gi|298676131|ref|YP_003727880.1| - 5.2e-33 112.9 21.5 5.4e-10 39.1 0.8 5.3 5 1 0 5 5 5 4 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|298676131|ref|YP_003727880.1| - 1.6e-26 91.8 37.9 6.5e-08 32.2 2.0 5.2 5 0 0 5 5 5 4 Cna protein B-type domain DUF4480 PF13715.1 gi|298676131|ref|YP_003727880.1| - 8.2e-17 61.0 9.0 0.00013 21.9 0.1 4.9 5 0 0 5 5 5 4 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|298676131|ref|YP_003727880.1| - 2.6e-10 40.1 11.5 0.01 15.5 0.2 5.1 4 1 1 5 5 5 3 Prophage tail fibre N-terminal MG1 PF11974.3 gi|298676131|ref|YP_003727880.1| - 1.5e-09 38.2 0.2 0.4 11.2 0.0 4.4 4 0 0 4 4 4 3 Alpha-2-macroglobulin MG1 domain Pollen_Ole_e_I PF01190.12 gi|298676131|ref|YP_003727880.1| - 1.9e-05 24.4 3.0 0.73 9.7 0.0 4.4 5 0 0 5 5 5 2 Pollen proteins Ole e I like DUF1416 PF07210.7 gi|298676131|ref|YP_003727880.1| - 3e-05 23.5 0.0 0.039 13.5 0.0 3.6 3 0 0 3 3 3 1 Protein of unknown function (DUF1416) DUF11 PF01345.13 gi|298676131|ref|YP_003727880.1| - 0.001 19.0 10.9 0.012 15.6 4.6 3.3 2 0 0 2 2 2 1 Domain of unknown function DUF11 Dioxygenase_C PF00775.16 gi|298676131|ref|YP_003727880.1| - 0.014 14.7 1.1 1.2 8.3 0.0 3.5 3 0 0 3 3 3 0 Dioxygenase PLRV_ORF5 PF01690.12 gi|298676131|ref|YP_003727880.1| - 0.022 13.9 4.6 1.1 8.3 0.5 2.7 3 0 0 3 3 3 0 Potato leaf roll virus readthrough protein LolA PF03548.10 gi|298676131|ref|YP_003727880.1| - 0.025 14.1 0.4 2.2 7.9 0.0 3.7 5 0 0 5 5 5 0 Outer membrane lipoprotein carrier protein LolA YcxB PF14317.1 gi|298676131|ref|YP_003727880.1| - 0.074 12.3 0.7 14 4.9 0.0 3.1 3 0 0 3 3 3 0 YcxB-like protein VCBS PF13517.1 gi|298676131|ref|YP_003727880.1| - 2.6 8.4 15.3 2.1 8.7 1.8 5.1 4 0 0 4 4 4 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PAS_9 PF13426.1 gi|298676132|ref|YP_003727881.1| - 6.3e-49 164.6 0.7 5.3e-14 52.4 0.0 5.3 5 1 0 5 5 5 4 PAS domain PAS PF00989.19 gi|298676132|ref|YP_003727881.1| - 6.5e-37 125.7 0.0 1.7e-12 47.1 0.0 5.0 5 0 0 5 5 5 4 PAS fold HATPase_c PF02518.21 gi|298676132|ref|YP_003727881.1| - 7.3e-34 115.8 0.1 1.4e-33 114.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|298676132|ref|YP_003727881.1| - 2.2e-33 114.5 0.0 2e-11 43.8 0.0 4.9 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|298676132|ref|YP_003727881.1| - 3.2e-27 93.4 0.1 1.5e-06 27.8 0.0 4.7 4 0 0 4 4 4 4 PAS domain HisKA PF00512.20 gi|298676132|ref|YP_003727881.1| - 3.1e-24 84.7 0.7 1e-22 79.8 0.1 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|298676132|ref|YP_003727881.1| - 1.2e-13 51.0 0.1 0.0021 18.1 0.0 5.2 4 1 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|298676132|ref|YP_003727881.1| - 2.8e-06 27.5 0.5 0.037 14.3 0.0 4.3 4 1 0 4 4 3 2 PAS domain PAS_7 PF12860.2 gi|298676132|ref|YP_003727881.1| - 5.8e-05 23.0 0.0 0.077 13.0 0.0 4.4 5 1 0 5 5 5 1 PAS fold GAF_2 PF13185.1 gi|298676132|ref|YP_003727881.1| - 0.00054 20.4 0.0 0.0013 19.2 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|298676132|ref|YP_003727881.1| - 0.00056 19.5 0.0 0.0017 18.0 0.0 1.9 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|298676132|ref|YP_003727881.1| - 0.0026 17.4 0.0 0.006 16.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|298676132|ref|YP_003727881.1| - 0.012 15.4 0.0 0.04 13.6 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|298676132|ref|YP_003727881.1| - 0.032 14.3 0.0 0.092 12.8 0.0 1.9 1 0 0 1 1 1 0 GAF domain VWA PF00092.23 gi|298676133|ref|YP_003727882.1| - 5.8e-21 74.9 2.9 1.1e-20 74.1 2.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF1194 PF06707.6 gi|298676133|ref|YP_003727882.1| - 8.6e-18 64.0 0.0 1.6e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1194) VWA_2 PF13519.1 gi|298676133|ref|YP_003727882.1| - 3.9e-08 33.5 0.2 6.3e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF11 PF01345.13 gi|298676133|ref|YP_003727882.1| - 2.5e-06 27.4 15.9 0.011 15.7 0.7 3.7 3 0 0 3 3 3 3 Domain of unknown function DUF11 CARDB PF07705.6 gi|298676133|ref|YP_003727882.1| - 5.4e-06 26.3 27.9 0.017 15.1 1.0 4.4 4 0 0 4 4 4 3 CARDB TRAP_beta PF05753.9 gi|298676133|ref|YP_003727882.1| - 0.0065 15.6 12.0 0.095 11.8 0.0 3.8 3 1 0 3 3 3 1 Translocon-associated protein beta (TRAPB) DUF2393 PF09624.5 gi|298676133|ref|YP_003727882.1| - 0.066 12.7 9.8 0.14 11.7 0.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) NPCBM_assoc PF10633.4 gi|298676133|ref|YP_003727882.1| - 0.071 13.1 4.5 20 5.2 0.0 4.5 5 0 0 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase T2SI PF02501.12 gi|298676133|ref|YP_003727882.1| - 0.087 12.7 0.1 24 4.9 0.0 2.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein I Ecm33 PF12454.3 gi|298676133|ref|YP_003727882.1| - 1.3 8.9 4.9 0.31 10.9 0.8 1.9 2 0 0 2 2 2 0 GPI-anchored cell wall organization protein OrfB_IS605 PF01385.14 gi|298676134|ref|YP_003727883.1| - 3.5e-51 173.7 1.2 3.5e-51 173.7 0.8 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298676134|ref|YP_003727883.1| - 1.9e-09 37.0 0.3 9.1e-09 34.8 0.1 2.3 2 1 0 2 2 2 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298676134|ref|YP_003727883.1| - 0.003 17.6 0.0 0.0072 16.4 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) DUF919 PF06034.6 gi|298676134|ref|YP_003727883.1| - 0.0046 16.5 0.4 0.013 15.1 0.3 1.7 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF4612 PF15389.1 gi|298676134|ref|YP_003727883.1| - 0.064 13.8 0.3 0.17 12.5 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4612) Prenyltransf PF01255.14 gi|298676135|ref|YP_003727884.1| - 2.2e-74 249.3 0.1 2.8e-74 248.9 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase PD40 PF07676.7 gi|298676136|ref|YP_003727885.1| - 4.9e-44 147.3 18.9 1.1e-11 44.0 0.1 8.1 7 0 0 7 7 7 7 WD40-like Beta Propeller Repeat CARDB PF07705.6 gi|298676136|ref|YP_003727885.1| - 1.8e-19 69.6 13.7 4.2e-17 62.0 1.7 3.8 3 0 0 3 3 3 2 CARDB CarboxypepD_reg PF13620.1 gi|298676136|ref|YP_003727885.1| - 1.4e-12 47.4 1.8 4.3e-10 39.4 0.1 3.4 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|298676136|ref|YP_003727885.1| - 2.9e-07 30.4 5.9 7.9e-06 25.8 0.4 3.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|298676136|ref|YP_003727885.1| - 5.5e-06 26.2 0.0 2.1e-05 24.3 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2012) Cna_B PF05738.8 gi|298676136|ref|YP_003727885.1| - 0.00013 21.6 4.6 0.00013 21.6 3.2 4.1 3 1 0 3 3 3 1 Cna protein B-type domain Gmad1 PF10647.4 gi|298676136|ref|YP_003727885.1| - 0.44 9.8 0.0 11 5.3 0.0 2.3 1 1 1 2 2 2 0 Lipoprotein LpqB beta-propeller domain TrmB PF01978.14 gi|298676137|ref|YP_003727886.1| - 3.9e-10 39.2 0.2 0.0011 18.6 0.0 3.1 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|298676137|ref|YP_003727886.1| - 3.1e-06 26.7 2.2 0.016 14.9 0.0 3.3 3 1 1 4 4 4 2 MarR family HTH_Crp_2 PF13545.1 gi|298676137|ref|YP_003727886.1| - 4.1e-05 23.2 0.2 0.01 15.5 0.0 3.2 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|298676137|ref|YP_003727886.1| - 6.3e-05 22.5 0.0 0.013 15.1 0.0 2.7 3 0 0 3 3 2 1 MarR family HTH_11 PF08279.7 gi|298676137|ref|YP_003727886.1| - 0.00049 19.6 0.1 0.42 10.3 0.0 2.8 2 0 0 2 2 2 2 HTH domain Aph-1 PF06105.7 gi|298676137|ref|YP_003727886.1| - 0.00071 18.9 0.1 0.00099 18.4 0.1 1.2 1 0 0 1 1 1 1 Aph-1 protein HTH_24 PF13412.1 gi|298676137|ref|YP_003727886.1| - 0.001 18.4 5.6 0.44 9.9 0.1 4.1 4 0 0 4 4 4 2 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|298676137|ref|YP_003727886.1| - 0.0066 16.7 0.0 0.62 10.4 0.0 2.8 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|298676137|ref|YP_003727886.1| - 0.0069 16.0 0.5 1.1 8.9 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|298676137|ref|YP_003727886.1| - 0.018 14.8 0.0 4.8 7.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1441 PF07278.6 gi|298676137|ref|YP_003727886.1| - 0.03 13.9 0.1 0.082 12.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1441) RPA_C PF08784.6 gi|298676137|ref|YP_003727886.1| - 0.043 14.2 0.2 6.2 7.2 0.0 2.5 2 0 0 2 2 2 0 Replication protein A C terminal HTH_34 PF13601.1 gi|298676137|ref|YP_003727886.1| - 0.054 13.5 2.0 6.9 6.7 0.1 3.2 3 0 0 3 3 3 0 Winged helix DNA-binding domain Peptidase_C23 PF05379.6 gi|298676137|ref|YP_003727886.1| - 0.058 13.3 0.0 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 Carlavirus endopeptidase Rrf2 PF02082.15 gi|298676137|ref|YP_003727886.1| - 0.061 13.4 0.2 1.1 9.3 0.0 2.7 3 0 0 3 3 3 0 Transcriptional regulator HTH_IclR PF09339.5 gi|298676137|ref|YP_003727886.1| - 0.078 12.5 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_43 PF09904.4 gi|298676137|ref|YP_003727886.1| - 0.089 12.6 0.0 0.37 10.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_36 PF13730.1 gi|298676137|ref|YP_003727886.1| - 0.22 11.6 4.1 0.89 9.7 0.1 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|298676137|ref|YP_003727886.1| - 0.41 10.8 2.4 2.4 8.4 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|298676137|ref|YP_003727886.1| - 4.4 7.1 8.1 2.2 8.1 0.5 3.5 3 1 1 4 4 4 0 Winged helix-turn-helix TrmB PF01978.14 gi|298676138|ref|YP_003727887.1| - 0.0001 21.9 0.1 0.00021 20.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AhpC-TSA PF00578.16 gi|298676138|ref|YP_003727887.1| - 0.0013 18.3 0.2 0.01 15.5 0.0 2.4 2 1 1 3 3 3 1 AhpC/TSA family PCI PF01399.22 gi|298676138|ref|YP_003727887.1| - 0.025 14.9 0.4 0.091 13.0 0.1 2.0 2 0 0 2 2 2 0 PCI domain DUF2204 PF09970.4 gi|298676138|ref|YP_003727887.1| - 0.029 13.8 0.1 1.8 8.0 0.0 2.3 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) PG_binding_2 PF08823.6 gi|298676138|ref|YP_003727887.1| - 0.051 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Putative peptidoglycan binding domain NTP_transferase PF00483.18 gi|298676139|ref|YP_003727888.1| - 6.6e-47 159.8 0.0 9.1e-47 159.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|298676139|ref|YP_003727888.1| - 2.7e-14 51.9 28.1 1.6e-06 27.3 2.7 4.9 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|298676139|ref|YP_003727888.1| - 7.2e-13 48.9 0.0 1e-12 48.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|298676139|ref|YP_003727888.1| - 1.2e-06 27.9 17.4 0.00019 20.8 1.9 4.7 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|298676139|ref|YP_003727888.1| - 0.0001 21.9 0.0 0.00026 20.6 0.0 1.7 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PGM_PMM_I PF02878.11 gi|298676140|ref|YP_003727889.1| - 7.9e-35 119.3 0.0 1.3e-34 118.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|298676140|ref|YP_003727889.1| - 1.1e-27 96.4 0.1 2.4e-27 95.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|298676140|ref|YP_003727889.1| - 7.8e-19 67.7 0.0 1.6e-18 66.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|298676140|ref|YP_003727889.1| - 8.7e-13 48.0 0.0 1.9e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Methyltransf_18 PF12847.2 gi|298676140|ref|YP_003727889.1| - 0.067 13.7 0.1 0.2 12.2 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain SIS PF01380.17 gi|298676141|ref|YP_003727890.1| - 1.1e-59 199.7 3.0 3.5e-29 101.0 0.1 3.2 4 0 0 4 4 4 2 SIS domain GATase_6 PF13522.1 gi|298676141|ref|YP_003727890.1| - 4.2e-24 85.0 0.0 8.8e-24 83.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|298676141|ref|YP_003727890.1| - 4.4e-21 74.9 0.0 5.7e-17 61.4 0.0 2.4 2 0 0 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|298676141|ref|YP_003727890.1| - 1.9e-18 66.4 0.1 6.8e-18 64.5 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|298676141|ref|YP_003727890.1| - 3.3e-05 22.7 0.1 5.6e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|298676141|ref|YP_003727890.1| - 0.00054 19.6 0.4 0.017 14.8 0.0 2.7 2 0 0 2 2 2 1 SIS domain NTP_transferase PF00483.18 gi|298676142|ref|YP_003727891.1| - 3.6e-45 154.1 0.2 5.9e-45 153.5 0.2 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|298676142|ref|YP_003727891.1| - 1.1e-22 78.4 21.1 3.2e-08 32.7 0.4 4.7 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|298676142|ref|YP_003727891.1| - 1e-15 58.1 0.0 1.4e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|298676142|ref|YP_003727891.1| - 2.3e-11 43.0 22.3 3.7e-07 29.5 3.5 4.4 4 1 2 6 6 6 4 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|298676142|ref|YP_003727891.1| - 6.4e-06 25.8 0.1 1.5e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|298676142|ref|YP_003727891.1| - 1.9e-05 24.3 0.1 3.1e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 CTP_transf_3 PF02348.14 gi|298676142|ref|YP_003727891.1| - 0.0007 19.2 0.5 0.0013 18.4 0.4 1.4 1 0 0 1 1 1 1 Cytidylyltransferase Gsf2 PF11055.3 gi|298676142|ref|YP_003727891.1| - 0.0058 15.2 0.1 0.024 13.1 0.0 1.8 2 0 0 2 2 2 1 Glucose signalling factor 2 Glyco_tranf_2_3 PF13641.1 gi|298676142|ref|YP_003727891.1| - 0.0067 16.2 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 OrfB_Zn_ribbon PF07282.6 gi|298676143|ref|YP_003727892.1| - 1.9e-25 88.3 2.0 8.3e-25 86.2 0.7 2.4 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|298676143|ref|YP_003727892.1| - 2.3e-15 56.6 1.9 3.4e-15 56.0 0.8 1.6 1 1 0 1 1 1 1 Probable transposase Tnp_zf-ribbon_2 PF13842.1 gi|298676143|ref|YP_003727892.1| - 0.032 14.6 5.6 0.075 13.4 3.9 1.6 1 0 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF2578 PF10843.3 gi|298676143|ref|YP_003727892.1| - 0.058 13.0 1.1 0.13 11.9 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2578) DNA_RNApol_7kD PF03604.8 gi|298676143|ref|YP_003727892.1| - 0.18 11.2 5.9 0.68 9.4 4.1 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|298676143|ref|YP_003727892.1| - 0.41 10.3 3.7 2.1 8.1 0.0 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|298676143|ref|YP_003727892.1| - 1.5 8.6 6.5 4.1 7.2 4.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DsbD_2 PF13386.1 gi|298676144|ref|YP_003727893.1| - 0.0085 15.8 0.3 0.0092 15.7 0.2 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2207 PF09972.4 gi|298676144|ref|YP_003727893.1| - 0.063 11.8 0.2 0.068 11.7 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Tetraspannin PF00335.15 gi|298676144|ref|YP_003727893.1| - 0.3 10.3 4.0 0.4 9.9 2.8 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF872 PF05915.7 gi|298676144|ref|YP_003727893.1| - 1.1 9.1 3.5 1.5 8.7 2.4 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Epimerase PF01370.16 gi|298676145|ref|YP_003727894.1| - 3.5e-58 196.8 0.0 1.8e-57 194.5 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|298676145|ref|YP_003727894.1| - 1.8e-22 79.6 0.8 5.1e-21 74.8 0.6 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|298676145|ref|YP_003727894.1| - 7.4e-22 77.3 0.0 1e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|298676145|ref|YP_003727894.1| - 1.7e-12 46.8 0.0 2.2e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|298676145|ref|YP_003727894.1| - 2.7e-11 42.8 0.0 1.8e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|298676145|ref|YP_003727894.1| - 4.9e-11 42.9 0.0 1e-10 41.9 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|298676145|ref|YP_003727894.1| - 3.8e-07 30.1 0.2 0.0002 21.2 0.1 2.5 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|298676145|ref|YP_003727894.1| - 0.0001 21.6 0.3 0.00087 18.6 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family 3HCDH_N PF02737.13 gi|298676145|ref|YP_003727894.1| - 0.003 17.2 0.0 0.0058 16.3 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KR PF08659.5 gi|298676145|ref|YP_003727894.1| - 0.042 13.5 0.2 0.98 9.0 0.0 2.3 1 1 1 2 2 2 0 KR domain Pyr_redox PF00070.22 gi|298676145|ref|YP_003727894.1| - 0.052 13.9 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_2 PF00535.21 gi|298676146|ref|YP_003727895.1| - 8.9e-24 84.0 0.2 1.4e-23 83.4 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|298676146|ref|YP_003727895.1| - 4.9e-05 23.2 0.1 7.2e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|298676146|ref|YP_003727895.1| - 0.0014 18.9 0.0 0.0082 16.4 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 2 Claudin_2 PF13903.1 gi|298676146|ref|YP_003727895.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction FtsX PF02687.16 gi|298676146|ref|YP_003727895.1| - 0.23 11.2 4.0 0.38 10.5 2.8 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF373 PF04123.8 gi|298676146|ref|YP_003727895.1| - 3.8 6.4 7.0 0.59 9.0 1.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF373) PepSY_TM PF03929.11 gi|298676146|ref|YP_003727895.1| - 4.2 7.9 8.0 1 9.8 1.0 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix Glycos_transf_2 PF00535.21 gi|298676147|ref|YP_003727896.1| - 4.2e-28 98.1 0.3 7.2e-28 97.3 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|298676147|ref|YP_003727896.1| - 2e-18 67.0 0.0 3.1e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|298676147|ref|YP_003727896.1| - 5e-15 55.3 0.1 7.8e-15 54.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|298676147|ref|YP_003727896.1| - 3.9e-13 49.5 0.1 5.6e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|298676147|ref|YP_003727896.1| - 0.00021 21.5 0.2 0.0016 18.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Anp1 PF03452.9 gi|298676147|ref|YP_003727896.1| - 0.072 12.2 0.1 0.13 11.3 0.0 1.4 2 0 0 2 2 2 0 Anp1 AMP-binding PF00501.23 gi|298676148|ref|YP_003727897.1| - 1.5e-05 23.6 0.0 2.1e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme DUF458 PF04308.7 gi|298676148|ref|YP_003727897.1| - 0.0076 15.9 0.2 0.017 14.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF458) Glycos_transf_1 PF00534.15 gi|298676149|ref|YP_003727898.1| - 1.6e-35 122.0 0.6 3.3e-35 121.0 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|298676149|ref|YP_003727898.1| - 5.8e-17 62.1 0.0 1.1e-16 61.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|298676149|ref|YP_003727898.1| - 2.5e-08 34.0 0.0 6e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|298676149|ref|YP_003727898.1| - 2.4e-05 24.5 0.0 3.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|298676149|ref|YP_003727898.1| - 3e-05 23.8 0.0 0.00017 21.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|298676150|ref|YP_003727899.1| - 2.6e-38 131.1 0.5 3.4e-37 127.4 0.3 2.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|298676150|ref|YP_003727899.1| - 1.8e-14 54.0 0.0 3.2e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|298676150|ref|YP_003727899.1| - 1.4e-08 34.6 0.0 4.1e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|298676150|ref|YP_003727899.1| - 0.00012 22.2 0.0 0.00062 19.9 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 DUF1359 PF07097.6 gi|298676150|ref|YP_003727899.1| - 0.018 15.0 0.4 0.06 13.3 0.2 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1359) Glyco_trans_4_4 PF13579.1 gi|298676150|ref|YP_003727899.1| - 0.025 14.7 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DUF4649 PF15507.1 gi|298676150|ref|YP_003727899.1| - 0.042 13.6 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4649) Glycos_transf_2 PF00535.21 gi|298676152|ref|YP_003727901.1| - 2.3e-44 151.0 0.7 3.9e-44 150.3 0.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|298676152|ref|YP_003727901.1| - 7.5e-21 74.9 0.0 1.6e-20 73.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|298676152|ref|YP_003727901.1| - 2.2e-20 72.9 5.4 2.6e-20 72.6 3.8 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.10 gi|298676152|ref|YP_003727901.1| - 5.1e-05 22.0 2.2 0.0021 16.7 0.1 2.1 2 0 0 2 2 2 2 GNT-I family TPR_8 PF13181.1 gi|298676152|ref|YP_003727901.1| - 0.0033 17.1 0.1 0.01 15.5 0.1 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|298676152|ref|YP_003727901.1| - 0.012 15.1 0.1 0.043 13.4 0.0 1.9 2 0 0 2 2 2 0 TPR repeat NTR2 PF15458.1 gi|298676152|ref|YP_003727901.1| - 0.017 14.4 0.4 0.023 13.9 0.3 1.2 1 0 0 1 1 1 0 Nineteen complex-related protein 2 TPR_1 PF00515.23 gi|298676152|ref|YP_003727901.1| - 0.032 13.8 0.0 0.074 12.6 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|298676152|ref|YP_003727901.1| - 0.037 13.9 0.0 0.077 12.9 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Glyco_tranf_2_4 PF13704.1 gi|298676152|ref|YP_003727901.1| - 0.049 13.9 0.0 0.1 12.9 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 NTP_transferase PF00483.18 gi|298676152|ref|YP_003727901.1| - 0.06 12.6 0.0 0.092 12.0 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Glycos_transf_1 PF00534.15 gi|298676153|ref|YP_003727902.1| - 3.4e-42 143.7 0.0 6.1e-42 142.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|298676153|ref|YP_003727902.1| - 9e-14 51.4 5.4 2.3e-08 33.9 0.4 2.7 1 1 1 2 2 2 2 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.1 gi|298676153|ref|YP_003727902.1| - 3e-12 46.8 0.0 4.3e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|298676153|ref|YP_003727902.1| - 3.7e-08 33.5 0.0 8.6e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|298676153|ref|YP_003727902.1| - 3.9e-07 30.3 0.0 3.4e-06 27.2 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|298676153|ref|YP_003727902.1| - 4.8e-05 23.1 0.0 0.015 15.0 0.0 2.9 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|298676153|ref|YP_003727902.1| - 0.039 13.4 0.1 0.081 12.4 0.1 1.5 1 1 0 1 1 1 0 Starch synthase catalytic domain Polysacc_synt PF01943.12 gi|298676154|ref|YP_003727903.1| - 8.1e-21 74.4 34.3 8.1e-21 74.4 23.7 2.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|298676154|ref|YP_003727903.1| - 1.7e-18 66.8 26.6 1.7e-18 66.8 18.5 3.4 3 0 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|298676154|ref|YP_003727903.1| - 6.7e-16 58.5 19.5 6.7e-16 58.5 13.5 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|298676154|ref|YP_003727903.1| - 1.6e-08 33.3 48.4 5.4e-08 31.6 29.7 2.9 1 1 2 3 3 3 1 MviN-like protein Sulfotransfer_3 PF13469.1 gi|298676155|ref|YP_003727904.1| - 0.00042 21.2 0.0 0.0028 18.5 0.0 2.0 1 1 0 1 1 1 1 Sulfotransferase family Proteasom_PSMB PF10508.4 gi|298676155|ref|YP_003727904.1| - 0.0067 14.7 0.1 0.0097 14.2 0.1 1.2 1 0 0 1 1 1 1 Proteasome non-ATPase 26S subunit NTP_transferase PF00483.18 gi|298676156|ref|YP_003727905.1| - 9.4e-43 146.2 0.0 1.1e-42 146.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|298676156|ref|YP_003727905.1| - 1.9e-15 57.3 0.0 2.4e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|298676156|ref|YP_003727905.1| - 8.2e-08 32.0 0.1 4.8e-07 29.5 0.0 2.1 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|298676156|ref|YP_003727905.1| - 0.0016 18.1 0.1 0.0021 17.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 OrfB_IS605 PF01385.14 gi|298676158|ref|YP_003727907.1| - 2.9e-56 190.4 7.0 3.8e-56 190.0 4.8 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298676158|ref|YP_003727907.1| - 2.3e-11 43.1 0.0 4.7e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glyco_hydro_97 PF10566.4 gi|298676158|ref|YP_003727907.1| - 0.0025 16.9 0.1 0.005 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycoside hydrolase 97 UPF0081 PF03652.10 gi|298676158|ref|YP_003727907.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) Mrr_cat PF04471.7 gi|298676159|ref|YP_003727908.1| - 2.5e-28 98.1 0.1 3.4e-26 91.3 0.1 2.3 2 0 0 2 2 2 2 Restriction endonuclease CARD PF00619.16 gi|298676159|ref|YP_003727908.1| - 0.0019 18.0 1.5 2.7 7.8 0.2 3.5 2 1 1 3 3 3 2 Caspase recruitment domain FAD_binding_1 PF00667.15 gi|298676159|ref|YP_003727908.1| - 0.0024 17.3 1.6 0.0041 16.5 0.2 1.9 1 1 1 2 2 2 1 FAD binding domain AMA-1 PF02430.10 gi|298676159|ref|YP_003727908.1| - 0.016 14.1 0.3 0.024 13.5 0.2 1.2 1 0 0 1 1 1 0 Apical membrane antigen 1 HEAT_PBS PF03130.11 gi|298676159|ref|YP_003727908.1| - 0.16 12.4 0.1 52 4.7 0.0 3.2 3 0 0 3 3 3 0 PBS lyase HEAT-like repeat Mrr_cat PF04471.7 gi|298676160|ref|YP_003727909.1| - 2.6e-24 85.2 0.3 5.4e-24 84.2 0.1 1.6 2 0 0 2 2 2 1 Restriction endonuclease BTB PF00651.26 gi|298676160|ref|YP_003727909.1| - 0.023 14.6 1.1 0.36 10.8 0.1 2.8 2 1 0 2 2 2 0 BTB/POZ domain PemK PF02452.12 gi|298676161|ref|YP_003727910.1| - 3.7e-13 49.6 0.0 4.1e-13 49.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein Antitoxin-MazE PF04014.13 gi|298676162|ref|YP_003727911.1| - 1.1e-09 37.7 0.1 1.5e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|298676162|ref|YP_003727911.1| - 0.055 13.2 0.1 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 MraZ protein DUF904 PF06005.7 gi|298676162|ref|YP_003727911.1| - 0.19 12.0 0.5 0.19 12.0 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF904) S-layer PF07752.6 gi|298676163|ref|YP_003727912.1| - 4.3e-107 357.1 44.4 2e-55 187.8 9.2 4.0 3 0 0 3 3 3 2 S-layer protein Peptidase_S8 PF00082.17 gi|298676163|ref|YP_003727912.1| - 7.3e-48 163.1 8.4 7.3e-48 163.1 5.8 3.6 2 1 0 2 2 2 1 Subtilase family Big_3_4 PF13754.1 gi|298676163|ref|YP_003727912.1| - 2.9e-07 30.7 7.3 2.4e-05 24.5 2.9 10.2 10 0 0 10 10 10 3 Bacterial Ig-like domain (group 3) FlgD_ig PF13860.1 gi|298676163|ref|YP_003727912.1| - 0.0002 21.0 0.3 0.0002 21.0 0.2 6.1 6 0 0 6 6 6 1 FlgD Ig-like domain DUF2271 PF10029.4 gi|298676163|ref|YP_003727912.1| - 0.0007 19.0 4.4 0.0071 15.8 0.1 3.9 4 0 0 4 4 4 1 Predicted periplasmic protein (DUF2271) DUF4625 PF15418.1 gi|298676163|ref|YP_003727912.1| - 0.0092 16.1 21.6 0.18 11.9 0.3 6.4 5 1 1 6 6 6 2 Domain of unknown function (DUF4625) Miro PF08477.8 gi|298676166|ref|YP_003727915.1| - 0.02 15.3 0.0 4.1 7.9 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein Tubulin_2 PF13809.1 gi|298676167|ref|YP_003727916.1| - 1.4e-09 37.3 0.3 1.4e-09 37.3 0.2 2.7 2 2 1 3 3 3 1 Tubulin like Tubulin PF00091.20 gi|298676167|ref|YP_003727916.1| - 1.1e-06 28.6 3.7 3e-06 27.2 0.0 3.3 3 0 0 3 3 3 1 Tubulin/FtsZ family, GTPase domain DUF1499 PF07386.6 gi|298676167|ref|YP_003727916.1| - 0.062 13.4 0.9 2.8 8.1 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1499) Fe-ADH PF00465.14 gi|298676167|ref|YP_003727916.1| - 1.4 7.5 2.7 22 3.5 0.0 3.0 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase Arch_flagellin PF01917.11 gi|298676168|ref|YP_003727917.1| - 6.4e-42 143.3 10.8 1.5e-40 138.8 7.5 2.1 1 1 0 1 1 1 1 Archaebacterial flagellin DUF1628 PF07790.6 gi|298676168|ref|YP_003727917.1| - 2.4 8.9 6.8 0.78 10.5 1.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) Clr5 PF14420.1 gi|298676169|ref|YP_003727918.1| - 0.027 14.3 0.2 0.035 13.9 0.1 1.2 1 0 0 1 1 1 0 Clr5 domain Orthopox_F14 PF06076.7 gi|298676169|ref|YP_003727918.1| - 0.32 11.0 6.9 0.69 10.0 4.7 1.7 1 1 0 1 1 1 0 Orthopoxvirus F14 protein OrfB_IS605 PF01385.14 gi|298676171|ref|YP_003727920.1| - 9.9e-52 175.5 1.7 9.9e-52 175.5 1.2 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298676171|ref|YP_003727920.1| - 3.3e-11 42.6 0.1 1.1e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|298676171|ref|YP_003727920.1| - 0.0089 16.1 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) AAA_12 PF13087.1 gi|298676172|ref|YP_003727921.1| - 4.4e-14 52.3 3.6 7.4e-13 48.3 1.2 2.8 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|298676172|ref|YP_003727921.1| - 4e-13 49.5 0.0 7.9e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF559 PF04480.7 gi|298676172|ref|YP_003727921.1| - 0.00023 20.7 0.0 0.0007 19.2 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF559) RAP PF08373.5 gi|298676172|ref|YP_003727921.1| - 0.0012 18.5 1.1 0.0032 17.2 0.1 2.4 2 0 0 2 2 2 1 RAP domain AAA_30 PF13604.1 gi|298676172|ref|YP_003727921.1| - 0.0068 15.9 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|298676172|ref|YP_003727921.1| - 0.013 15.0 0.0 0.029 13.9 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PAS_3 PF08447.6 gi|298676173|ref|YP_003727922.1| - 4.7e-42 142.0 0.7 1.3e-20 73.2 0.3 3.5 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|298676173|ref|YP_003727922.1| - 1.8e-35 121.4 2.9 9.1e-15 54.9 0.0 4.1 4 0 0 4 4 4 4 PAS domain PAS PF00989.19 gi|298676173|ref|YP_003727922.1| - 2.6e-25 88.3 0.1 3.5e-15 55.7 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|298676173|ref|YP_003727922.1| - 3.3e-25 88.2 0.0 1.7e-10 40.8 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS_11 PF14598.1 gi|298676173|ref|YP_003727922.1| - 4.2e-09 36.3 0.0 2.6e-06 27.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.1 gi|298676173|ref|YP_003727922.1| - 3e-08 33.2 0.0 0.17 11.7 0.0 4.3 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.2 gi|298676173|ref|YP_003727922.1| - 0.013 15.5 1.7 1.4 8.9 0.0 4.2 4 2 0 4 4 4 0 PAS fold HisKA_2 PF07568.7 gi|298676174|ref|YP_003727923.1| - 2.5e-30 104.1 5.1 2.5e-30 104.1 3.5 2.3 2 1 0 2 2 2 1 Histidine kinase HATPase_c PF02518.21 gi|298676174|ref|YP_003727923.1| - 4.7e-10 39.1 0.1 1.9e-09 37.2 0.0 2.0 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|298676174|ref|YP_003727923.1| - 3.8e-07 30.4 1.8 1.1e-06 28.9 0.2 2.3 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|298676174|ref|YP_003727923.1| - 9.1e-05 22.2 0.0 0.00017 21.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Apolipoprotein PF01442.13 gi|298676174|ref|YP_003727923.1| - 0.0014 18.1 2.8 0.0018 17.7 2.0 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Pepsin-I3 PF06394.8 gi|298676174|ref|YP_003727923.1| - 0.0069 16.0 1.4 0.012 15.2 1.0 1.3 1 0 0 1 1 1 1 Pepsin inhibitor-3-like repeated domain SEO_N PF14576.1 gi|298676174|ref|YP_003727923.1| - 0.011 14.9 3.2 0.015 14.5 2.0 1.3 1 1 0 1 1 1 0 Sieve element occlusion N-terminus HATPase_c_3 PF13589.1 gi|298676174|ref|YP_003727923.1| - 0.02 14.5 0.7 0.13 11.9 0.0 2.4 3 0 0 3 3 3 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Phage_GP20 PF06810.6 gi|298676174|ref|YP_003727923.1| - 0.037 13.4 6.7 0.057 12.8 4.6 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 Gluconate_2-dh3 PF13618.1 gi|298676174|ref|YP_003727923.1| - 0.13 12.4 0.7 0.28 11.3 0.5 1.6 1 1 1 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 DUF1269 PF06897.7 gi|298676174|ref|YP_003727923.1| - 0.16 11.9 1.6 0.45 10.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) MCM_N PF14551.1 gi|298676174|ref|YP_003727923.1| - 0.64 10.5 6.0 1.3 9.5 4.1 1.5 1 0 0 1 1 1 0 MCM N-terminal domain EAP30 PF04157.11 gi|298676174|ref|YP_003727923.1| - 0.83 8.7 5.8 2.6 7.1 4.0 1.8 1 1 0 1 1 1 0 EAP30/Vps36 family CorA PF01544.13 gi|298676174|ref|YP_003727923.1| - 4.1 6.3 9.7 12 4.8 6.5 1.7 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Fib_alpha PF08702.5 gi|298676174|ref|YP_003727923.1| - 5.5 7.1 8.6 5 7.2 5.2 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF457 PF04307.9 gi|298676176|ref|YP_003727925.1| - 5.8e-14 51.7 7.6 7.1e-14 51.4 5.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) NDUF_C2 PF06374.6 gi|298676176|ref|YP_003727925.1| - 0.053 13.5 1.0 2.5 8.1 0.1 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) TF_Zn_Ribbon PF08271.7 gi|298676177|ref|YP_003727926.1| - 0.001 18.3 0.2 0.0016 17.7 0.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|298676177|ref|YP_003727926.1| - 0.0067 16.6 0.3 0.0072 16.6 0.2 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar FlhC PF05280.6 gi|298676177|ref|YP_003727926.1| - 0.014 14.8 0.3 0.014 14.8 0.2 1.0 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) DUF1272 PF06906.6 gi|298676177|ref|YP_003727926.1| - 0.015 15.0 2.8 0.74 9.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DNA_ligase_ZBD PF03119.11 gi|298676177|ref|YP_003727926.1| - 0.034 13.8 0.6 0.19 11.4 0.2 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_3 PF14369.1 gi|298676177|ref|YP_003727926.1| - 0.042 13.8 0.1 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 zinc-finger DUF4428 PF14471.1 gi|298676177|ref|YP_003727926.1| - 0.069 12.9 1.4 0.11 12.2 1.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Ecl1 PF12855.2 gi|298676177|ref|YP_003727926.1| - 0.075 12.3 0.3 0.081 12.2 0.2 1.2 1 0 0 1 1 1 0 Life-span regulatory factor zf-HIT PF04438.11 gi|298676177|ref|YP_003727926.1| - 0.088 12.4 0.1 0.17 11.5 0.1 1.5 1 1 0 1 1 1 0 HIT zinc finger zf-CSL PF05207.8 gi|298676177|ref|YP_003727926.1| - 0.13 11.7 0.5 0.15 11.5 0.3 1.1 1 0 0 1 1 1 0 CSL zinc finger zf-FCS PF06467.9 gi|298676177|ref|YP_003727926.1| - 0.15 11.6 0.8 0.53 9.9 0.5 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Prok-RING_1 PF14446.1 gi|298676177|ref|YP_003727926.1| - 0.16 11.7 0.8 0.28 10.9 0.5 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1616 PF07760.6 gi|298676178|ref|YP_003727927.1| - 7.1e-111 369.9 5.3 8e-111 369.7 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.11 gi|298676178|ref|YP_003727927.1| - 2e-06 26.7 2.2 3.2e-06 26.1 1.5 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily CbiQ PF02361.11 gi|298676178|ref|YP_003727927.1| - 0.04 13.4 0.1 0.083 12.4 0.0 1.5 1 1 0 1 1 1 0 Cobalt transport protein DUF3366 PF11846.3 gi|298676178|ref|YP_003727927.1| - 0.2 11.4 0.7 1.3 8.8 0.0 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF3366) Abi PF02517.11 gi|298676179|ref|YP_003727928.1| - 1.9e-17 63.1 6.1 1.9e-17 63.1 4.2 2.5 2 1 0 2 2 2 1 CAAX protease self-immunity Fip1 PF05182.8 gi|298676179|ref|YP_003727928.1| - 0.16 11.2 0.5 0.29 10.4 0.3 1.4 1 0 0 1 1 1 0 Fip1 motif DUF502 PF04367.8 gi|298676179|ref|YP_003727928.1| - 4.3 7.1 8.8 14 5.4 1.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF502) NfeD PF01957.13 gi|298676180|ref|YP_003727929.1| - 0.087 12.9 1.1 0.11 12.6 0.6 1.3 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF212 PF02681.9 gi|298676180|ref|YP_003727929.1| - 0.19 11.4 1.1 0.25 11.0 0.6 1.3 1 1 0 1 1 1 0 Divergent PAP2 family Y_Y_Y PF07495.8 gi|298676181|ref|YP_003727930.1| - 2.3e-06 27.2 0.1 0.00027 20.6 0.0 3.0 2 0 0 2 2 2 2 Y_Y_Y domain UPF0228 PF05727.6 gi|298676183|ref|YP_003727932.1| - 1.4e-26 92.7 8.9 2.1e-26 92.1 6.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) Arch_flagellin PF01917.11 gi|298676183|ref|YP_003727932.1| - 0.022 14.3 0.4 0.022 14.3 0.2 1.9 1 1 1 2 2 2 0 Archaebacterial flagellin Peptidase_C39 PF03412.10 gi|298676183|ref|YP_003727932.1| - 0.032 14.0 0.3 0.049 13.4 0.2 1.3 1 0 0 1 1 1 0 Peptidase C39 family DUF1129 PF06570.6 gi|298676185|ref|YP_003727934.1| - 0.032 13.5 0.3 0.068 12.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF1628 PF07790.6 gi|298676186|ref|YP_003727935.1| - 6.8e-05 23.5 0.1 0.00021 21.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) UPF0228 PF05727.6 gi|298676188|ref|YP_003727937.1| - 2.3e-25 88.8 2.0 3.9e-25 88.0 1.4 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0228) DUF4529 PF15032.1 gi|298676188|ref|YP_003727937.1| - 0.072 11.6 0.0 0.097 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4529) DUF1027 PF06265.6 gi|298676188|ref|YP_003727937.1| - 0.58 10.0 4.3 8.6 6.3 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1027) OppC_N PF12911.2 gi|298676189|ref|YP_003727938.1| - 0.97 8.8 5.9 1.1 8.6 0.4 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4017 PF13209.1 gi|298676189|ref|YP_003727938.1| - 2.8 7.8 6.9 4.5 7.1 4.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4017) Pox_A14 PF05767.7 gi|298676189|ref|YP_003727938.1| - 2.9 7.9 5.8 4.2 7.3 4.0 1.3 1 1 0 1 1 1 0 Poxvirus virion envelope protein A14 YjgP_YjgQ PF03739.9 gi|298676189|ref|YP_003727938.1| - 3 6.4 8.9 2.1 6.9 1.1 2.0 1 1 1 2 2 2 0 Predicted permease YjgP/YjgQ family Gate PF07670.9 gi|298676189|ref|YP_003727938.1| - 9.1 6.2 6.5 13 5.7 4.5 1.3 1 1 0 1 1 1 0 Nucleoside recognition DUF2246 PF10229.4 gi|298676190|ref|YP_003727939.1| - 0.12 11.6 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2246) GRP PF07172.6 gi|298676191|ref|YP_003727940.1| - 0.069 13.6 0.4 0.076 13.4 0.3 1.0 1 0 0 1 1 1 0 Glycine rich protein family NosD PF05048.8 gi|298676192|ref|YP_003727941.1| - 4.4e-32 111.1 93.7 1.3e-17 63.7 27.2 3.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|298676192|ref|YP_003727941.1| - 2.5e-21 76.0 95.4 2.7e-15 56.4 30.6 3.2 1 1 2 3 3 3 2 Right handed beta helix region FixG_C PF11614.3 gi|298676194|ref|YP_003727943.1| - 4.7e-13 49.2 51.0 0.00033 20.7 0.7 7.9 5 2 2 7 7 7 6 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF11 PF01345.13 gi|298676194|ref|YP_003727943.1| - 0.00035 20.5 3.2 0.00035 20.5 2.2 8.2 7 1 1 8 8 8 4 Domain of unknown function DUF11 Pentapeptide_4 PF13599.1 gi|298676194|ref|YP_003727943.1| - 0.0047 16.6 1.1 0.016 14.9 0.1 2.5 2 0 0 2 2 2 1 Pentapeptide repeats (9 copies) Fn3-like PF14310.1 gi|298676194|ref|YP_003727943.1| - 0.035 14.0 0.0 16 5.5 0.0 4.4 4 0 0 4 4 4 0 Fibronectin type III-like domain DUF1628 PF07790.6 gi|298676195|ref|YP_003727944.1| - 6.7e-25 87.6 1.5 6.7e-25 87.6 1.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Response_reg PF00072.19 gi|298676196|ref|YP_003727945.1| - 1.2e-26 92.9 0.1 1.3e-26 92.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF2672 PF10878.3 gi|298676196|ref|YP_003727945.1| - 0.12 12.1 1.7 0.24 11.1 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2672) DUF1947 PF09183.5 gi|298676197|ref|YP_003727946.1| - 0.005 16.5 0.2 1.3 8.8 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF1947) Ras PF00071.17 gi|298676197|ref|YP_003727946.1| - 0.053 12.9 0.1 0.091 12.1 0.1 1.4 1 0 0 1 1 1 0 Ras family Prenylcys_lyase PF07156.9 gi|298676198|ref|YP_003727947.1| - 0.009 14.9 1.1 0.011 14.6 0.8 1.1 1 0 0 1 1 1 1 Prenylcysteine lyase GatB_Yqey PF02637.13 gi|298676198|ref|YP_003727947.1| - 0.014 15.1 1.6 0.016 14.8 0.5 1.6 2 0 0 2 2 2 0 GatB domain SNF2_assoc PF08455.5 gi|298676199|ref|YP_003727948.1| - 0.0023 16.5 0.6 0.0026 16.3 0.4 1.1 1 0 0 1 1 1 1 Bacterial SNF2 helicase associated GatB_Yqey PF02637.13 gi|298676199|ref|YP_003727948.1| - 0.015 15.0 0.7 0.018 14.7 0.5 1.1 1 0 0 1 1 1 0 GatB domain UBA_e1_C PF09358.5 gi|298676201|ref|YP_003727950.1| - 0.08 13.1 0.1 0.091 12.9 0.1 1.2 1 0 0 1 1 1 0 Ubiquitin-activating enzyme e1 C-terminal domain EamA PF00892.15 gi|298676202|ref|YP_003727951.1| - 3.1e-11 43.4 42.1 7e-07 29.3 9.6 3.0 3 2 0 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|298676202|ref|YP_003727951.1| - 2.6e-09 37.2 11.0 2.6e-09 37.2 7.6 3.2 3 1 0 3 3 3 1 Multidrug resistance efflux transporter DUF2621 PF11084.3 gi|298676202|ref|YP_003727951.1| - 0.26 10.9 1.7 0.76 9.4 1.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) Rer1 PF03248.8 gi|298676204|ref|YP_003727953.1| - 0.067 12.7 2.4 0.075 12.6 1.7 1.0 1 0 0 1 1 1 0 Rer1 family DDE_3 PF13358.1 gi|298676205|ref|YP_003727954.1| - 6.1e-22 77.9 0.3 8.7e-22 77.4 0.1 1.4 2 0 0 2 2 2 1 DDE superfamily endonuclease rve PF00665.21 gi|298676205|ref|YP_003727954.1| - 2.1e-08 34.2 0.0 3.3e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_1 PF03184.14 gi|298676205|ref|YP_003727954.1| - 1.1e-06 27.9 0.1 1.6e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_Tnp_ISAZ013 PF07592.6 gi|298676205|ref|YP_003727954.1| - 0.069 11.8 0.0 0.092 11.4 0.0 1.1 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain TetR_C_2 PF08361.6 gi|298676205|ref|YP_003727954.1| - 0.12 12.3 0.1 0.51 10.2 0.0 1.8 2 0 0 2 2 2 0 MAATS-type transcriptional repressor, C-terminal region HTH_29 PF13551.1 gi|298676206|ref|YP_003727955.1| - 1.4e-14 54.1 0.2 6.7e-14 51.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|298676206|ref|YP_003727955.1| - 7.6e-09 36.2 0.2 7.6e-09 36.2 0.1 2.0 3 0 0 3 3 3 1 Homeodomain-like domain HTH_23 PF13384.1 gi|298676206|ref|YP_003727955.1| - 3.2e-08 32.9 0.1 1.2e-07 31.1 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_33 PF13592.1 gi|298676206|ref|YP_003727955.1| - 1.7e-07 30.6 1.1 5.8e-07 28.9 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn helix HTH_28 PF13518.1 gi|298676206|ref|YP_003727955.1| - 1.9e-07 30.9 0.0 5.8e-07 29.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF559 PF04480.7 gi|298676206|ref|YP_003727955.1| - 0.0017 18.0 0.3 0.0052 16.4 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF559) HTH_Tnp_IS630 PF01710.11 gi|298676206|ref|YP_003727955.1| - 0.0041 16.7 0.8 0.0088 15.7 0.2 1.6 1 1 1 2 2 2 1 Transposase LZ_Tnp_IS481 PF13011.1 gi|298676206|ref|YP_003727955.1| - 0.13 12.6 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_Tnp_1_2 PF13022.1 gi|298676206|ref|YP_003727955.1| - 1.3 8.8 5.3 8 6.2 0.0 2.8 2 1 1 3 3 3 0 Helix-turn-helix of insertion element transposase PAS_9 PF13426.1 gi|298676207|ref|YP_003727956.1| - 1.4e-25 89.7 0.3 7.3e-12 45.5 0.1 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|298676207|ref|YP_003727956.1| - 4.9e-16 58.7 0.0 1.4e-07 31.5 0.0 2.2 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|298676207|ref|YP_003727956.1| - 5e-15 54.7 0.1 5.2e-07 29.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|298676207|ref|YP_003727956.1| - 3.7e-13 49.2 0.1 1.1e-05 25.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|298676207|ref|YP_003727956.1| - 1.1e-05 25.4 0.0 0.0096 15.9 0.0 2.7 2 1 0 2 2 2 2 PAS fold Glug PF07581.7 gi|298676209|ref|YP_003727958.1| - 4.4e-48 158.3 187.2 0.00044 20.2 1.8 25.7 26 0 0 26 26 26 20 The GLUG motif NosD PF05048.8 gi|298676209|ref|YP_003727958.1| - 4.3e-33 114.4 103.7 6.7e-26 90.8 26.2 6.8 3 2 2 5 5 5 2 Periplasmic copper-binding protein (NosD) Trypan_PARP PF05887.6 gi|298676209|ref|YP_003727958.1| - 0.038 13.8 3.8 0.12 12.2 2.7 1.8 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Pex19 PF04614.7 gi|298676210|ref|YP_003727959.1| - 0.0072 15.9 3.5 0.0082 15.7 2.4 1.0 1 0 0 1 1 1 1 Pex19 protein family KLRAQ PF10205.4 gi|298676210|ref|YP_003727959.1| - 1.3 9.0 5.3 0.35 10.9 0.3 2.2 1 1 1 2 2 2 0 Predicted coiled-coil domain-containing protein AAA_23 PF13476.1 gi|298676210|ref|YP_003727959.1| - 3.2 8.0 10.0 4 7.7 6.9 1.1 1 0 0 1 1 1 0 AAA domain Orthopox_B11R PF07033.6 gi|298676211|ref|YP_003727960.1| - 0.057 12.8 0.8 0.12 11.9 0.5 1.5 1 0 0 1 1 1 0 Orthopoxvirus B11R protein DUF3599 PF12206.3 gi|298676212|ref|YP_003727961.1| - 0.02 15.1 0.6 0.032 14.4 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3599) DUF1628 PF07790.6 gi|298676212|ref|YP_003727961.1| - 0.043 14.5 0.5 0.16 12.7 0.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) ThiS PF02597.15 gi|298676212|ref|YP_003727961.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 ThiS family Plasmid_stabil PF05016.9 gi|298676214|ref|YP_003727963.1| - 2.7e-06 27.6 0.4 4.1e-06 27.0 0.3 1.3 1 1 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|298676214|ref|YP_003727963.1| - 5.9e-06 26.2 0.1 6.8e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Phage derived protein Gp49-like (DUF891) DUF4364 PF14277.1 gi|298676214|ref|YP_003727963.1| - 0.0019 17.8 0.3 0.0022 17.6 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF2325 PF10087.4 gi|298676214|ref|YP_003727963.1| - 0.055 13.3 0.0 0.074 12.8 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) Plasmid_killer PF05015.8 gi|298676214|ref|YP_003727963.1| - 0.099 12.8 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Plasmid maintenance system killer protein Gag_p24 PF00607.15 gi|298676215|ref|YP_003727964.1| - 0.0018 17.8 0.0 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 gag gene protein p24 (core nucleocapsid protein) zf-Di19 PF05605.7 gi|298676217|ref|YP_003727966.1| - 1e-07 31.9 20.3 0.059 13.5 3.5 4.0 2 1 0 3 3 3 3 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.3 gi|298676217|ref|YP_003727966.1| - 1.9e-07 31.0 11.2 0.00016 21.7 1.5 4.7 5 0 0 5 5 4 2 Zinc-finger double-stranded RNA-binding zf-C2H2_4 PF13894.1 gi|298676217|ref|YP_003727966.1| - 3.5e-06 26.9 29.9 0.018 15.3 0.1 5.2 4 1 0 4 4 4 3 C2H2-type zinc finger DZR PF12773.2 gi|298676217|ref|YP_003727966.1| - 6.7e-05 22.6 9.8 0.007 16.1 0.7 3.2 3 0 0 3 3 3 2 Double zinc ribbon Y2_Tnp PF04986.8 gi|298676217|ref|YP_003727966.1| - 0.00021 21.0 0.1 0.51 10.0 0.0 2.2 1 1 1 2 2 2 2 Putative transposase zf-C2H2 PF00096.21 gi|298676217|ref|YP_003727966.1| - 0.0011 19.2 38.8 0.028 14.7 2.2 5.7 6 0 0 6 6 6 3 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|298676217|ref|YP_003727966.1| - 0.0029 17.2 5.2 0.045 13.4 0.3 4.2 5 0 0 5 5 4 2 zinc-finger of a C2HC-type PyrI_C PF02748.10 gi|298676217|ref|YP_003727966.1| - 0.0039 16.6 11.3 0.047 13.1 0.1 3.2 3 1 0 3 3 3 2 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2H2_2 PF12756.2 gi|298676217|ref|YP_003727966.1| - 0.0042 17.1 26.7 0.1 12.7 1.2 3.6 1 1 0 2 2 2 2 C2H2 type zinc-finger (2 copies) zf-met PF12874.2 gi|298676217|ref|YP_003727966.1| - 0.0048 17.0 18.9 0.18 12.0 1.2 4.4 4 0 0 4 4 4 2 Zinc-finger of C2H2 type zf-ribbon_3 PF13248.1 gi|298676217|ref|YP_003727966.1| - 0.0087 15.2 5.6 0.0087 15.2 3.9 3.5 4 0 0 4 4 3 1 zinc-ribbon domain zf-CHCC PF10276.4 gi|298676217|ref|YP_003727966.1| - 0.023 14.5 1.6 0.43 10.4 0.1 4.3 4 1 1 5 5 5 0 Zinc-finger domain HSP33 PF01430.14 gi|298676217|ref|YP_003727966.1| - 0.044 12.9 2.0 3.7 6.5 0.1 2.2 2 0 0 2 2 2 0 Hsp33 protein Sgf11 PF08209.6 gi|298676217|ref|YP_003727966.1| - 0.24 10.7 11.7 3.6 6.9 0.1 3.7 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-DNA_Pol PF08996.5 gi|298676217|ref|YP_003727966.1| - 0.32 10.3 12.2 0.29 10.4 0.3 2.7 2 1 1 3 3 3 0 DNA Polymerase alpha zinc finger GFA PF04828.9 gi|298676217|ref|YP_003727966.1| - 0.55 10.2 17.1 5.2 7.0 2.0 3.7 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme DUF629 PF04780.7 gi|298676217|ref|YP_003727966.1| - 0.67 8.4 19.1 2.3 6.6 1.8 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF629) zf-MYND PF01753.13 gi|298676217|ref|YP_003727966.1| - 0.74 9.7 17.6 2.1 8.3 2.2 3.7 3 1 0 3 3 3 0 MYND finger zf-AN1 PF01428.11 gi|298676217|ref|YP_003727966.1| - 4.5 7.2 34.2 0.14 12.0 2.1 3.8 4 0 0 4 4 4 0 AN1-like Zinc finger DDE_3 PF13358.1 gi|298676218|ref|YP_003727967.1| - 1e-23 83.6 0.1 1.4e-23 83.2 0.1 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DUF387 PF04079.11 gi|298676218|ref|YP_003727967.1| - 0.05 12.9 0.0 0.084 12.2 0.0 1.5 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) rve PF00665.21 gi|298676218|ref|YP_003727967.1| - 0.096 12.7 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Integrase core domain HTH_29 PF13551.1 gi|298676219|ref|YP_003727968.1| - 3.9e-21 75.2 0.0 6.9e-21 74.4 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.1 gi|298676219|ref|YP_003727968.1| - 4.9e-07 30.4 0.0 1.1e-06 29.3 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|298676219|ref|YP_003727968.1| - 7e-05 22.3 0.1 0.00022 20.7 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain DUF4284 PF14112.1 gi|298676219|ref|YP_003727968.1| - 0.004 17.6 1.0 2.5 8.5 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4284) Clathrin PF00637.15 gi|298676219|ref|YP_003727968.1| - 0.028 14.0 0.3 0.048 13.2 0.2 1.4 1 0 0 1 1 1 0 Region in Clathrin and VPS ORF6N PF10543.4 gi|298676219|ref|YP_003727968.1| - 0.071 13.1 0.1 4 7.5 0.0 2.3 2 0 0 2 2 2 0 ORF6N domain fn3 PF00041.16 gi|298676220|ref|YP_003727969.1| - 1.8e-07 31.1 2.1 1.8e-07 31.1 1.5 3.7 3 1 0 3 3 3 1 Fibronectin type III domain Big_3_4 PF13754.1 gi|298676220|ref|YP_003727969.1| - 3.5e-05 24.0 12.8 3.5e-05 24.0 8.8 8.8 9 2 0 9 9 9 2 Bacterial Ig-like domain (group 3) SWM_repeat PF13753.1 gi|298676220|ref|YP_003727969.1| - 4.5e-05 22.6 44.6 4.5e-05 22.6 30.9 4.4 2 1 1 4 4 4 2 Putative flagellar system-associated repeat Big_3_3 PF13750.1 gi|298676220|ref|YP_003727969.1| - 0.0015 17.9 1.6 0.0015 17.9 1.1 6.2 6 2 1 7 7 7 2 Bacterial Ig-like domain (group 3) Big_1 PF02369.11 gi|298676220|ref|YP_003727969.1| - 0.0057 16.5 7.4 0.0057 16.5 5.2 5.8 4 1 0 5 5 5 2 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|298676221|ref|YP_003727970.1| - 0.0019 18.2 2.1 0.0041 17.1 0.3 2.5 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Pollen_Ole_e_I PF01190.12 gi|298676221|ref|YP_003727970.1| - 0.011 15.5 0.6 0.031 14.1 0.0 2.0 2 0 0 2 2 2 0 Pollen proteins Ole e I like Gram_pos_anchor PF00746.16 gi|298676221|ref|YP_003727970.1| - 0.012 15.3 0.6 0.012 15.3 0.4 1.8 2 0 0 2 2 2 0 Gram positive anchor DUF4480 PF13715.1 gi|298676221|ref|YP_003727970.1| - 0.039 13.9 0.4 0.039 13.9 0.3 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4480) SEP PF08059.8 gi|298676221|ref|YP_003727970.1| - 0.54 10.6 3.6 2.3 8.6 0.8 2.7 2 1 0 2 2 2 0 SEP domain Cupredoxin_1 PF13473.1 gi|298676221|ref|YP_003727970.1| - 1 9.3 4.4 2.7 7.9 2.2 2.3 2 1 0 2 2 2 0 Cupredoxin-like domain DUF290 PF01060.18 gi|298676221|ref|YP_003727970.1| - 1.6 8.8 4.6 1.2 9.1 0.1 2.9 3 1 1 4 4 4 0 Transthyretin-like family Big_3_4 PF13754.1 gi|298676223|ref|YP_003727972.1| - 3.3e-19 68.9 236.1 3e-05 24.2 3.7 20.8 20 2 2 22 22 22 13 Bacterial Ig-like domain (group 3) SWM_repeat PF13753.1 gi|298676223|ref|YP_003727972.1| - 4.7e-12 45.6 75.9 1.8e-10 40.3 29.9 11.3 2 1 8 10 10 10 7 Putative flagellar system-associated repeat DUF4625 PF15418.1 gi|298676223|ref|YP_003727972.1| - 0.021 14.9 0.2 0.021 14.9 0.1 10.2 6 2 5 11 11 11 0 Domain of unknown function (DUF4625) Big_3_3 PF13750.1 gi|298676223|ref|YP_003727972.1| - 0.051 13.0 0.1 0.0042 16.5 3.4 15.2 14 5 6 20 20 20 0 Bacterial Ig-like domain (group 3) AAA_23 PF13476.1 gi|298676224|ref|YP_003727973.1| - 1.8e-10 41.5 30.8 1.8e-10 41.5 21.3 4.6 1 1 2 3 3 1 1 AAA domain AAA_13 PF13166.1 gi|298676224|ref|YP_003727973.1| - 2.4e-07 29.6 84.8 0.00033 19.2 27.6 2.3 1 1 1 2 2 2 2 AAA domain Spc7 PF08317.6 gi|298676224|ref|YP_003727973.1| - 0.0024 16.6 15.7 0.0024 16.6 10.9 3.9 1 1 2 3 3 3 2 Spc7 kinetochore protein IncA PF04156.9 gi|298676224|ref|YP_003727973.1| - 0.0034 17.0 71.0 0.35 10.4 6.4 4.3 2 2 2 4 4 4 4 IncA protein Reo_sigmaC PF04582.7 gi|298676224|ref|YP_003727973.1| - 0.062 12.4 25.3 0.25 10.4 6.1 4.1 1 1 3 4 4 4 0 Reovirus sigma C capsid protein DUF3584 PF12128.3 gi|298676224|ref|YP_003727973.1| - 0.28 8.4 65.5 0.27 8.4 20.6 3.0 2 1 0 3 3 3 0 Protein of unknown function (DUF3584) HOOK PF05622.7 gi|298676224|ref|YP_003727973.1| - 0.46 8.2 63.7 0.88 7.2 16.7 2.1 2 0 0 2 2 2 0 HOOK protein TBPIP PF07106.8 gi|298676224|ref|YP_003727973.1| - 0.78 9.2 86.9 0.83 9.1 10.8 4.5 2 2 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Tropomyosin PF00261.15 gi|298676224|ref|YP_003727973.1| - 3 6.8 73.3 3.5 6.6 21.1 4.3 2 2 2 4 4 4 0 Tropomyosin FliJ PF02050.11 gi|298676224|ref|YP_003727973.1| - 6.7 6.7 55.8 0.039 14.0 4.9 5.3 2 2 3 5 5 5 0 Flagellar FliJ protein BLOC1_2 PF10046.4 gi|298676224|ref|YP_003727973.1| - 8.5 6.5 71.9 4.3 7.5 7.5 6.3 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF445 PF04286.7 gi|298676225|ref|YP_003727974.1| - 0.082 12.4 0.2 0.11 11.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF445) HTH_45 PF14947.1 gi|298676226|ref|YP_003727975.1| - 7.4e-06 25.6 1.6 0.0013 18.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DUF2250 PF10007.4 gi|298676226|ref|YP_003727975.1| - 0.0018 18.1 0.1 1.3 8.9 0.0 2.4 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) OrfB_IS605 PF01385.14 gi|298676228|ref|YP_003727977.1| - 1.3e-44 152.3 5.8 1.3e-44 152.3 4.0 1.5 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|298676228|ref|YP_003727977.1| - 3.5e-24 84.2 0.3 6.6e-24 83.3 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|298676228|ref|YP_003727977.1| - 6.6e-20 70.1 1.8 1.5e-19 69.0 1.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.14 gi|298676228|ref|YP_003727977.1| - 0.053 13.2 0.3 0.3 10.7 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family M_domain PF12938.2 gi|298676228|ref|YP_003727977.1| - 0.51 10.1 5.1 0.18 11.6 1.5 1.6 2 0 0 2 2 2 0 M domain of GW182 Occludin_ELL PF07303.8 gi|298676228|ref|YP_003727977.1| - 0.8 10.4 8.0 0.41 11.4 2.2 2.4 2 0 0 2 2 2 0 Occludin homology domain Phage_GP20 PF06810.6 gi|298676228|ref|YP_003727977.1| - 6.5 6.1 13.8 0.83 9.0 3.4 2.9 3 1 0 3 3 3 0 Phage minor structural protein GP20 Rubredoxin PF00301.15 gi|298676228|ref|YP_003727977.1| - 6.9 6.6 9.9 49 3.9 5.9 2.8 2 1 0 2 2 2 0 Rubredoxin Big_3_4 PF13754.1 gi|298676229|ref|YP_003727978.1| - 1.6e-13 50.7 19.3 8.8e-09 35.5 7.1 10.3 11 1 0 11 11 11 5 Bacterial Ig-like domain (group 3) Big_3_2 PF12245.3 gi|298676229|ref|YP_003727978.1| - 8.3e-08 31.6 10.2 0.00011 21.6 0.1 5.4 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|298676229|ref|YP_003727978.1| - 3.6e-05 23.8 23.3 0.19 11.8 0.4 6.5 4 1 1 6 6 6 3 Domain of unknown function (DUF4625) SWM_repeat PF13753.1 gi|298676229|ref|YP_003727978.1| - 0.019 14.0 124.7 0.004 16.2 34.4 4.6 2 1 3 5 5 5 0 Putative flagellar system-associated repeat CarboxypepD_reg PF13620.1 gi|298676230|ref|YP_003727979.1| - 0.0004 20.3 3.9 0.00048 20.1 0.9 2.5 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain Gram_pos_anchor PF00746.16 gi|298676230|ref|YP_003727979.1| - 0.004 16.9 0.9 0.004 16.9 0.6 1.8 2 0 0 2 2 2 1 Gram positive anchor Pollen_Ole_e_I PF01190.12 gi|298676230|ref|YP_003727979.1| - 0.04 13.7 0.3 0.14 11.9 0.0 2.0 2 0 0 2 2 2 0 Pollen proteins Ole e I like DUF4480 PF13715.1 gi|298676230|ref|YP_003727979.1| - 0.1 12.6 0.4 0.1 12.6 0.2 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF4480) Ribosomal_L19 PF01245.15 gi|298676230|ref|YP_003727979.1| - 0.13 12.0 0.7 0.24 11.1 0.5 1.4 1 0 0 1 1 1 0 Ribosomal protein L19 GspH PF12019.3 gi|298676230|ref|YP_003727979.1| - 0.18 11.9 0.9 1.1 9.4 0.6 2.3 1 1 0 1 1 1 0 Type II transport protein GspH ABC2_membrane_3 PF12698.2 gi|298676230|ref|YP_003727979.1| - 0.93 8.4 7.4 3.5 6.5 5.1 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein TrmB PF01978.14 gi|298676231|ref|YP_003727980.1| - 1.6e-06 27.6 0.0 2.5e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|298676231|ref|YP_003727980.1| - 1.1e-05 24.9 0.1 2.1e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|298676231|ref|YP_003727980.1| - 2.3e-05 23.9 0.0 3.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF387 PF04079.11 gi|298676231|ref|YP_003727980.1| - 0.00073 18.9 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_24 PF13412.1 gi|298676231|ref|YP_003727980.1| - 0.0041 16.4 0.1 0.01 15.2 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|298676231|ref|YP_003727980.1| - 0.014 15.2 0.3 0.042 13.6 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF327 PF03885.8 gi|298676231|ref|YP_003727980.1| - 0.019 14.7 0.2 0.022 14.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF327) HTH_27 PF13463.1 gi|298676231|ref|YP_003727980.1| - 0.03 14.6 0.1 0.053 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2015 PF09435.5 gi|298676231|ref|YP_003727980.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) AAA_22 PF13401.1 gi|298676232|ref|YP_003727981.1| - 9e-15 54.9 0.1 2.5e-14 53.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|298676232|ref|YP_003727981.1| - 5.6e-07 29.7 0.2 1.1e-05 25.4 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|298676232|ref|YP_003727981.1| - 7.7e-05 22.4 0.3 0.00064 19.4 0.2 2.5 1 1 0 1 1 1 1 Archaeal ATPase SNF2_N PF00176.18 gi|298676232|ref|YP_003727981.1| - 0.001 17.9 0.3 0.0015 17.3 0.2 1.4 1 1 0 1 1 1 1 SNF2 family N-terminal domain NB-ARC PF00931.17 gi|298676232|ref|YP_003727981.1| - 0.0021 16.9 0.2 1.4 7.7 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA PF00004.24 gi|298676232|ref|YP_003727981.1| - 0.0093 16.1 0.6 0.025 14.7 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA)