#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.6	gi|298676128|ref|YP_003727877.1|	-	4.1e-17	61.6	0.2	8.2e-17	60.7	0.1	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|298676128|ref|YP_003727877.1|	-	3.5e-12	46.5	0.0	7.4e-12	45.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|298676128|ref|YP_003727877.1|	-	5e-10	39.6	0.0	1.3e-09	38.3	0.0	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|298676128|ref|YP_003727877.1|	-	1.8e-07	31.1	0.1	3.6e-07	30.1	0.1	1.5	1	1	0	1	1	1	1	Archaeal	ATPase
AAA	PF00004.24	gi|298676128|ref|YP_003727877.1|	-	5.4e-07	29.8	0.0	1.5e-06	28.4	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|298676128|ref|YP_003727877.1|	-	1.2e-05	24.3	0.0	2.3e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
NACHT	PF05729.7	gi|298676128|ref|YP_003727877.1|	-	0.00011	21.9	0.0	0.00018	21.2	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_32	PF13654.1	gi|298676128|ref|YP_003727877.1|	-	0.0022	16.7	0.2	0.18	10.4	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Kinesin	PF00225.18	gi|298676128|ref|YP_003727877.1|	-	0.0027	16.4	0.0	0.018	13.7	0.0	2.1	2	0	0	2	2	2	1	Kinesin	motor	domain
DUF2075	PF09848.4	gi|298676128|ref|YP_003727877.1|	-	0.0033	16.4	0.0	0.0042	16.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.17	gi|298676128|ref|YP_003727877.1|	-	0.0036	17.4	0.2	0.016	15.3	0.1	2.2	1	1	0	1	1	1	1	RNA	helicase
AAA_5	PF07728.9	gi|298676128|ref|YP_003727877.1|	-	0.0043	16.7	0.1	0.6	9.8	0.0	2.8	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
PIF1	PF05970.9	gi|298676128|ref|YP_003727877.1|	-	0.0073	15.3	0.0	0.016	14.1	0.0	1.7	1	1	1	2	2	2	1	PIF1-like	helicase
Sigma54_activat	PF00158.21	gi|298676128|ref|YP_003727877.1|	-	0.0095	15.4	0.0	0.024	14.1	0.0	1.7	1	0	0	1	1	1	1	Sigma-54	interaction	domain
ResIII	PF04851.10	gi|298676128|ref|YP_003727877.1|	-	0.014	15.2	0.0	0.048	13.4	0.0	1.9	1	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
NB-ARC	PF00931.17	gi|298676128|ref|YP_003727877.1|	-	0.023	13.5	0.0	0.034	13.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Miro	PF08477.8	gi|298676128|ref|YP_003727877.1|	-	0.025	15.0	0.0	0.065	13.7	0.0	1.8	1	0	0	1	1	1	0	Miro-like	protein
DUF508	PF04370.7	gi|298676128|ref|YP_003727877.1|	-	0.027	14.0	0.0	0.13	11.9	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF508)
KAP_NTPase	PF07693.9	gi|298676128|ref|YP_003727877.1|	-	0.038	12.9	0.1	0.91	8.4	0.0	2.2	1	1	1	2	2	2	0	KAP	family	P-loop	domain
DUF87	PF01935.12	gi|298676128|ref|YP_003727877.1|	-	0.04	13.7	0.1	0.22	11.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_2	PF07724.9	gi|298676128|ref|YP_003727877.1|	-	0.05	13.5	0.0	0.14	12.0	0.0	1.7	2	0	0	2	2	1	0	AAA	domain	(Cdc48	subfamily)
T2SE	PF00437.15	gi|298676128|ref|YP_003727877.1|	-	0.056	12.3	0.0	0.096	11.5	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DEAD	PF00270.24	gi|298676128|ref|YP_003727877.1|	-	0.061	12.8	0.0	0.29	10.6	0.0	2.1	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
RuvB_N	PF05496.7	gi|298676128|ref|YP_003727877.1|	-	0.088	11.8	0.0	3.1	6.7	0.0	2.5	1	1	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Zeta_toxin	PF06414.7	gi|298676128|ref|YP_003727877.1|	-	0.11	11.5	0.0	0.22	10.5	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
DUF772	PF05598.6	gi|298676129|ref|YP_003727878.1|	-	1.3e-19	69.8	0.1	2.4e-19	68.9	0.1	1.4	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1	PF01609.16	gi|298676129|ref|YP_003727878.1|	-	4.2e-11	42.8	1.8	1.5e-10	41.0	1.3	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_4	PF13359.1	gi|298676129|ref|YP_003727878.1|	-	0.00018	21.1	0.2	0.00043	19.9	0.1	1.6	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_1_3	PF13612.1	gi|298676129|ref|YP_003727878.1|	-	0.00064	19.5	0.3	0.0014	18.3	0.1	1.7	2	0	0	2	2	2	1	Transposase	DDE	domain
Imm35	PF15581.1	gi|298676129|ref|YP_003727878.1|	-	0.06	13.3	0.0	0.81	9.7	0.0	2.4	2	0	0	2	2	2	0	Immunity	protein	35
CarboxypepD_reg	PF13620.1	gi|298676130|ref|YP_003727879.1|	-	3.3e-75	248.1	46.3	4.6e-10	39.4	0.8	8.6	8	0	0	8	8	8	8	Carboxypeptidase	regulatory-like	domain
Cna_B	PF05738.8	gi|298676130|ref|YP_003727879.1|	-	3.5e-60	199.6	79.0	2.1e-11	43.4	1.9	9.0	9	0	0	9	9	9	8	Cna	protein	B-type	domain
DUF4480	PF13715.1	gi|298676130|ref|YP_003727879.1|	-	4.7e-39	132.3	36.3	6.4e-05	22.9	0.2	8.7	9	0	0	9	9	9	8	Domain	of	unknown	function	(DUF4480)
phage_tail_N	PF08400.5	gi|298676130|ref|YP_003727879.1|	-	6.1e-25	87.4	35.9	0.00011	21.9	0.3	8.9	8	1	1	9	9	9	7	Prophage	tail	fibre	N-terminal
MG1	PF11974.3	gi|298676130|ref|YP_003727879.1|	-	3.3e-23	82.0	7.4	0.0014	19.1	0.0	8.4	8	0	0	8	8	8	6	Alpha-2-macroglobulin	MG1	domain
Pollen_Ole_e_I	PF01190.12	gi|298676130|ref|YP_003727879.1|	-	3.1e-13	49.3	13.3	0.81	9.5	0.0	8.6	9	0	0	9	9	9	5	Pollen	proteins	Ole	e	I	like
DUF2012	PF09430.5	gi|298676130|ref|YP_003727879.1|	-	9.6e-12	44.8	15.3	1.9	8.3	0.0	8.3	8	0	0	8	8	8	4	Protein	of	unknown	function	(DUF2012)
DUF1416	PF07210.7	gi|298676130|ref|YP_003727879.1|	-	8e-06	25.3	0.8	21	4.8	0.0	6.4	6	0	0	6	6	6	0	Protein	of	unknown	function	(DUF1416)
PLRV_ORF5	PF01690.12	gi|298676130|ref|YP_003727879.1|	-	5.2e-05	22.5	17.8	1.2	8.2	0.8	5.1	5	0	0	5	5	5	3	Potato	leaf	roll	virus	readthrough	protein
Dioxygenase_C	PF00775.16	gi|298676130|ref|YP_003727879.1|	-	0.00029	20.1	16.6	0.49	9.6	0.0	7.4	8	0	0	8	8	8	1	Dioxygenase
DUF2025	PF09634.5	gi|298676130|ref|YP_003727879.1|	-	0.0011	18.6	3.1	19	5.0	0.0	5.4	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF2025)
DUF4198	PF10670.4	gi|298676130|ref|YP_003727879.1|	-	0.056	13.4	9.5	7.6	6.4	0.0	6.3	7	1	1	8	8	8	0	Domain	of	unknown	function	(DUF4198)
YcxB	PF14317.1	gi|298676130|ref|YP_003727879.1|	-	0.094	11.9	3.8	25	4.2	0.0	4.5	4	0	0	4	4	4	0	YcxB-like	protein
fn3_3	PF14686.1	gi|298676130|ref|YP_003727879.1|	-	3.6	7.7	29.1	0.84	9.8	0.0	8.2	8	0	0	8	8	8	0	Polysaccharide	lyase	family	4,	domain	II
CarboxypepD_reg	PF13620.1	gi|298676131|ref|YP_003727880.1|	-	5.2e-33	112.9	21.5	5.4e-10	39.1	0.8	5.3	5	1	0	5	5	5	4	Carboxypeptidase	regulatory-like	domain
Cna_B	PF05738.8	gi|298676131|ref|YP_003727880.1|	-	1.6e-26	91.8	37.9	6.5e-08	32.2	2.0	5.2	5	0	0	5	5	5	4	Cna	protein	B-type	domain
DUF4480	PF13715.1	gi|298676131|ref|YP_003727880.1|	-	8.2e-17	61.0	9.0	0.00013	21.9	0.1	4.9	5	0	0	5	5	5	4	Domain	of	unknown	function	(DUF4480)
phage_tail_N	PF08400.5	gi|298676131|ref|YP_003727880.1|	-	2.6e-10	40.1	11.5	0.01	15.5	0.2	5.1	4	1	1	5	5	5	3	Prophage	tail	fibre	N-terminal
MG1	PF11974.3	gi|298676131|ref|YP_003727880.1|	-	1.5e-09	38.2	0.2	0.4	11.2	0.0	4.4	4	0	0	4	4	4	3	Alpha-2-macroglobulin	MG1	domain
Pollen_Ole_e_I	PF01190.12	gi|298676131|ref|YP_003727880.1|	-	1.9e-05	24.4	3.0	0.73	9.7	0.0	4.4	5	0	0	5	5	5	2	Pollen	proteins	Ole	e	I	like
DUF1416	PF07210.7	gi|298676131|ref|YP_003727880.1|	-	3e-05	23.5	0.0	0.039	13.5	0.0	3.6	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1416)
DUF11	PF01345.13	gi|298676131|ref|YP_003727880.1|	-	0.001	19.0	10.9	0.012	15.6	4.6	3.3	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
Dioxygenase_C	PF00775.16	gi|298676131|ref|YP_003727880.1|	-	0.014	14.7	1.1	1.2	8.3	0.0	3.5	3	0	0	3	3	3	0	Dioxygenase
PLRV_ORF5	PF01690.12	gi|298676131|ref|YP_003727880.1|	-	0.022	13.9	4.6	1.1	8.3	0.5	2.7	3	0	0	3	3	3	0	Potato	leaf	roll	virus	readthrough	protein
LolA	PF03548.10	gi|298676131|ref|YP_003727880.1|	-	0.025	14.1	0.4	2.2	7.9	0.0	3.7	5	0	0	5	5	5	0	Outer	membrane	lipoprotein	carrier	protein	LolA
YcxB	PF14317.1	gi|298676131|ref|YP_003727880.1|	-	0.074	12.3	0.7	14	4.9	0.0	3.1	3	0	0	3	3	3	0	YcxB-like	protein
VCBS	PF13517.1	gi|298676131|ref|YP_003727880.1|	-	2.6	8.4	15.3	2.1	8.7	1.8	5.1	4	0	0	4	4	4	0	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
PAS_9	PF13426.1	gi|298676132|ref|YP_003727881.1|	-	6.3e-49	164.6	0.7	5.3e-14	52.4	0.0	5.3	5	1	0	5	5	5	4	PAS	domain
PAS	PF00989.19	gi|298676132|ref|YP_003727881.1|	-	6.5e-37	125.7	0.0	1.7e-12	47.1	0.0	5.0	5	0	0	5	5	5	4	PAS	fold
HATPase_c	PF02518.21	gi|298676132|ref|YP_003727881.1|	-	7.3e-34	115.8	0.1	1.4e-33	114.9	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|298676132|ref|YP_003727881.1|	-	2.2e-33	114.5	0.0	2e-11	43.8	0.0	4.9	5	1	0	5	5	5	4	PAS	fold
PAS_8	PF13188.1	gi|298676132|ref|YP_003727881.1|	-	3.2e-27	93.4	0.1	1.5e-06	27.8	0.0	4.7	4	0	0	4	4	4	4	PAS	domain
HisKA	PF00512.20	gi|298676132|ref|YP_003727881.1|	-	3.1e-24	84.7	0.7	1e-22	79.8	0.1	2.7	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.6	gi|298676132|ref|YP_003727881.1|	-	1.2e-13	51.0	0.1	0.0021	18.1	0.0	5.2	4	1	0	4	4	4	2	PAS	fold
PAS_10	PF13596.1	gi|298676132|ref|YP_003727881.1|	-	2.8e-06	27.5	0.5	0.037	14.3	0.0	4.3	4	1	0	4	4	3	2	PAS	domain
PAS_7	PF12860.2	gi|298676132|ref|YP_003727881.1|	-	5.8e-05	23.0	0.0	0.077	13.0	0.0	4.4	5	1	0	5	5	5	1	PAS	fold
GAF_2	PF13185.1	gi|298676132|ref|YP_003727881.1|	-	0.00054	20.4	0.0	0.0013	19.2	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.1	gi|298676132|ref|YP_003727881.1|	-	0.00056	19.5	0.0	0.0017	18.0	0.0	1.9	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.1	gi|298676132|ref|YP_003727881.1|	-	0.0026	17.4	0.0	0.006	16.2	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|298676132|ref|YP_003727881.1|	-	0.012	15.4	0.0	0.04	13.6	0.0	1.9	1	0	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
GAF_3	PF13492.1	gi|298676132|ref|YP_003727881.1|	-	0.032	14.3	0.0	0.092	12.8	0.0	1.9	1	0	0	1	1	1	0	GAF	domain
VWA	PF00092.23	gi|298676133|ref|YP_003727882.1|	-	5.8e-21	74.9	2.9	1.1e-20	74.1	2.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF1194	PF06707.6	gi|298676133|ref|YP_003727882.1|	-	8.6e-18	64.0	0.0	1.6e-17	63.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1194)
VWA_2	PF13519.1	gi|298676133|ref|YP_003727882.1|	-	3.9e-08	33.5	0.2	6.3e-08	32.9	0.1	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF11	PF01345.13	gi|298676133|ref|YP_003727882.1|	-	2.5e-06	27.4	15.9	0.011	15.7	0.7	3.7	3	0	0	3	3	3	3	Domain	of	unknown	function	DUF11
CARDB	PF07705.6	gi|298676133|ref|YP_003727882.1|	-	5.4e-06	26.3	27.9	0.017	15.1	1.0	4.4	4	0	0	4	4	4	3	CARDB
TRAP_beta	PF05753.9	gi|298676133|ref|YP_003727882.1|	-	0.0065	15.6	12.0	0.095	11.8	0.0	3.8	3	1	0	3	3	3	1	Translocon-associated	protein	beta	(TRAPB)
DUF2393	PF09624.5	gi|298676133|ref|YP_003727882.1|	-	0.066	12.7	9.8	0.14	11.7	0.2	3.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2393)
NPCBM_assoc	PF10633.4	gi|298676133|ref|YP_003727882.1|	-	0.071	13.1	4.5	20	5.2	0.0	4.5	5	0	0	5	5	5	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
T2SI	PF02501.12	gi|298676133|ref|YP_003727882.1|	-	0.087	12.7	0.1	24	4.9	0.0	2.7	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	I
Ecm33	PF12454.3	gi|298676133|ref|YP_003727882.1|	-	1.3	8.9	4.9	0.31	10.9	0.8	1.9	2	0	0	2	2	2	0	GPI-anchored	cell	wall	organization	protein
OrfB_IS605	PF01385.14	gi|298676134|ref|YP_003727883.1|	-	3.5e-51	173.7	1.2	3.5e-51	173.7	0.8	1.6	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|298676134|ref|YP_003727883.1|	-	1.9e-09	37.0	0.3	9.1e-09	34.8	0.1	2.3	2	1	0	2	2	2	1	Putative	transposase	DNA-binding	domain
UPF0081	PF03652.10	gi|298676134|ref|YP_003727883.1|	-	0.003	17.6	0.0	0.0072	16.4	0.0	1.6	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0081)
DUF919	PF06034.6	gi|298676134|ref|YP_003727883.1|	-	0.0046	16.5	0.4	0.013	15.1	0.3	1.7	1	0	0	1	1	1	1	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
DUF4612	PF15389.1	gi|298676134|ref|YP_003727883.1|	-	0.064	13.8	0.3	0.17	12.5	0.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4612)
Prenyltransf	PF01255.14	gi|298676135|ref|YP_003727884.1|	-	2.2e-74	249.3	0.1	2.8e-74	248.9	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
PD40	PF07676.7	gi|298676136|ref|YP_003727885.1|	-	4.9e-44	147.3	18.9	1.1e-11	44.0	0.1	8.1	7	0	0	7	7	7	7	WD40-like	Beta	Propeller	Repeat
CARDB	PF07705.6	gi|298676136|ref|YP_003727885.1|	-	1.8e-19	69.6	13.7	4.2e-17	62.0	1.7	3.8	3	0	0	3	3	3	2	CARDB
CarboxypepD_reg	PF13620.1	gi|298676136|ref|YP_003727885.1|	-	1.4e-12	47.4	1.8	4.3e-10	39.4	0.1	3.4	3	0	0	3	3	3	2	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|298676136|ref|YP_003727885.1|	-	2.9e-07	30.4	5.9	7.9e-06	25.8	0.4	3.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4480)
DUF2012	PF09430.5	gi|298676136|ref|YP_003727885.1|	-	5.5e-06	26.2	0.0	2.1e-05	24.3	0.0	2.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2012)
Cna_B	PF05738.8	gi|298676136|ref|YP_003727885.1|	-	0.00013	21.6	4.6	0.00013	21.6	3.2	4.1	3	1	0	3	3	3	1	Cna	protein	B-type	domain
Gmad1	PF10647.4	gi|298676136|ref|YP_003727885.1|	-	0.44	9.8	0.0	11	5.3	0.0	2.3	1	1	1	2	2	2	0	Lipoprotein	LpqB	beta-propeller	domain
TrmB	PF01978.14	gi|298676137|ref|YP_003727886.1|	-	3.9e-10	39.2	0.2	0.0011	18.6	0.0	3.1	3	0	0	3	3	3	2	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|298676137|ref|YP_003727886.1|	-	3.1e-06	26.7	2.2	0.016	14.9	0.0	3.3	3	1	1	4	4	4	2	MarR	family
HTH_Crp_2	PF13545.1	gi|298676137|ref|YP_003727886.1|	-	4.1e-05	23.2	0.2	0.01	15.5	0.0	3.2	3	0	0	3	3	3	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|298676137|ref|YP_003727886.1|	-	6.3e-05	22.5	0.0	0.013	15.1	0.0	2.7	3	0	0	3	3	2	1	MarR	family
HTH_11	PF08279.7	gi|298676137|ref|YP_003727886.1|	-	0.00049	19.6	0.1	0.42	10.3	0.0	2.8	2	0	0	2	2	2	2	HTH	domain
Aph-1	PF06105.7	gi|298676137|ref|YP_003727886.1|	-	0.00071	18.9	0.1	0.00099	18.4	0.1	1.2	1	0	0	1	1	1	1	Aph-1	protein
HTH_24	PF13412.1	gi|298676137|ref|YP_003727886.1|	-	0.001	18.4	5.6	0.44	9.9	0.1	4.1	4	0	0	4	4	4	2	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|298676137|ref|YP_003727886.1|	-	0.0066	16.7	0.0	0.62	10.4	0.0	2.8	3	0	0	3	3	2	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|298676137|ref|YP_003727886.1|	-	0.0069	16.0	0.5	1.1	8.9	0.0	2.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|298676137|ref|YP_003727886.1|	-	0.018	14.8	0.0	4.8	7.0	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF1441	PF07278.6	gi|298676137|ref|YP_003727886.1|	-	0.03	13.9	0.1	0.082	12.5	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1441)
RPA_C	PF08784.6	gi|298676137|ref|YP_003727886.1|	-	0.043	14.2	0.2	6.2	7.2	0.0	2.5	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
HTH_34	PF13601.1	gi|298676137|ref|YP_003727886.1|	-	0.054	13.5	2.0	6.9	6.7	0.1	3.2	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
Peptidase_C23	PF05379.6	gi|298676137|ref|YP_003727886.1|	-	0.058	13.3	0.0	0.18	11.7	0.0	1.8	2	0	0	2	2	2	0	Carlavirus	endopeptidase
Rrf2	PF02082.15	gi|298676137|ref|YP_003727886.1|	-	0.061	13.4	0.2	1.1	9.3	0.0	2.7	3	0	0	3	3	3	0	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|298676137|ref|YP_003727886.1|	-	0.078	12.5	0.0	1.5	8.4	0.0	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_43	PF09904.4	gi|298676137|ref|YP_003727886.1|	-	0.089	12.6	0.0	0.37	10.6	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_36	PF13730.1	gi|298676137|ref|YP_003727886.1|	-	0.22	11.6	4.1	0.89	9.7	0.1	3.2	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_40	PF14493.1	gi|298676137|ref|YP_003727886.1|	-	0.41	10.8	2.4	2.4	8.4	0.0	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|298676137|ref|YP_003727886.1|	-	4.4	7.1	8.1	2.2	8.1	0.5	3.5	3	1	1	4	4	4	0	Winged	helix-turn-helix
TrmB	PF01978.14	gi|298676138|ref|YP_003727887.1|	-	0.0001	21.9	0.1	0.00021	20.9	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
AhpC-TSA	PF00578.16	gi|298676138|ref|YP_003727887.1|	-	0.0013	18.3	0.2	0.01	15.5	0.0	2.4	2	1	1	3	3	3	1	AhpC/TSA	family
PCI	PF01399.22	gi|298676138|ref|YP_003727887.1|	-	0.025	14.9	0.4	0.091	13.0	0.1	2.0	2	0	0	2	2	2	0	PCI	domain
DUF2204	PF09970.4	gi|298676138|ref|YP_003727887.1|	-	0.029	13.8	0.1	1.8	8.0	0.0	2.3	2	0	0	2	2	2	0	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
PG_binding_2	PF08823.6	gi|298676138|ref|YP_003727887.1|	-	0.051	13.6	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
NTP_transferase	PF00483.18	gi|298676139|ref|YP_003727888.1|	-	6.6e-47	159.8	0.0	9.1e-47	159.4	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|298676139|ref|YP_003727888.1|	-	2.7e-14	51.9	28.1	1.6e-06	27.3	2.7	4.9	4	1	1	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|298676139|ref|YP_003727888.1|	-	7.2e-13	48.9	0.0	1e-12	48.4	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.1	gi|298676139|ref|YP_003727888.1|	-	1.2e-06	27.9	17.4	0.00019	20.8	1.9	4.7	5	0	0	5	5	5	3	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.14	gi|298676139|ref|YP_003727888.1|	-	0.0001	21.9	0.0	0.00026	20.6	0.0	1.7	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
PGM_PMM_I	PF02878.11	gi|298676140|ref|YP_003727889.1|	-	7.9e-35	119.3	0.0	1.3e-34	118.6	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|298676140|ref|YP_003727889.1|	-	1.1e-27	96.4	0.1	2.4e-27	95.3	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|298676140|ref|YP_003727889.1|	-	7.8e-19	67.7	0.0	1.6e-18	66.7	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|298676140|ref|YP_003727889.1|	-	8.7e-13	48.0	0.0	1.9e-12	47.0	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Methyltransf_18	PF12847.2	gi|298676140|ref|YP_003727889.1|	-	0.067	13.7	0.1	0.2	12.2	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
SIS	PF01380.17	gi|298676141|ref|YP_003727890.1|	-	1.1e-59	199.7	3.0	3.5e-29	101.0	0.1	3.2	4	0	0	4	4	4	2	SIS	domain
GATase_6	PF13522.1	gi|298676141|ref|YP_003727890.1|	-	4.2e-24	85.0	0.0	8.8e-24	83.9	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|298676141|ref|YP_003727890.1|	-	4.4e-21	74.9	0.0	5.7e-17	61.4	0.0	2.4	2	0	0	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|298676141|ref|YP_003727890.1|	-	1.9e-18	66.4	0.1	6.8e-18	64.5	0.0	2.0	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|298676141|ref|YP_003727890.1|	-	3.3e-05	22.7	0.1	5.6e-05	21.9	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.1	gi|298676141|ref|YP_003727890.1|	-	0.00054	19.6	0.4	0.017	14.8	0.0	2.7	2	0	0	2	2	2	1	SIS	domain
NTP_transferase	PF00483.18	gi|298676142|ref|YP_003727891.1|	-	3.6e-45	154.1	0.2	5.9e-45	153.5	0.2	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|298676142|ref|YP_003727891.1|	-	1.1e-22	78.4	21.1	3.2e-08	32.7	0.4	4.7	3	1	1	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|298676142|ref|YP_003727891.1|	-	1e-15	58.1	0.0	1.4e-15	57.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.1	gi|298676142|ref|YP_003727891.1|	-	2.3e-11	43.0	22.3	3.7e-07	29.5	3.5	4.4	4	1	2	6	6	6	4	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.14	gi|298676142|ref|YP_003727891.1|	-	6.4e-06	25.8	0.1	1.5e-05	24.6	0.0	1.7	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|298676142|ref|YP_003727891.1|	-	1.9e-05	24.3	0.1	3.1e-05	23.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
CTP_transf_3	PF02348.14	gi|298676142|ref|YP_003727891.1|	-	0.0007	19.2	0.5	0.0013	18.4	0.4	1.4	1	0	0	1	1	1	1	Cytidylyltransferase
Gsf2	PF11055.3	gi|298676142|ref|YP_003727891.1|	-	0.0058	15.2	0.1	0.024	13.1	0.0	1.8	2	0	0	2	2	2	1	Glucose	signalling	factor	2
Glyco_tranf_2_3	PF13641.1	gi|298676142|ref|YP_003727891.1|	-	0.0067	16.2	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
OrfB_Zn_ribbon	PF07282.6	gi|298676143|ref|YP_003727892.1|	-	1.9e-25	88.3	2.0	8.3e-25	86.2	0.7	2.4	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.14	gi|298676143|ref|YP_003727892.1|	-	2.3e-15	56.6	1.9	3.4e-15	56.0	0.8	1.6	1	1	0	1	1	1	1	Probable	transposase
Tnp_zf-ribbon_2	PF13842.1	gi|298676143|ref|YP_003727892.1|	-	0.032	14.6	5.6	0.075	13.4	3.9	1.6	1	0	0	1	1	1	0	DDE_Tnp_1-like	zinc-ribbon
DUF2578	PF10843.3	gi|298676143|ref|YP_003727892.1|	-	0.058	13.0	1.1	0.13	11.9	0.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2578)
DNA_RNApol_7kD	PF03604.8	gi|298676143|ref|YP_003727892.1|	-	0.18	11.2	5.9	0.68	9.4	4.1	1.9	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
UPF0547	PF10571.4	gi|298676143|ref|YP_003727892.1|	-	0.41	10.3	3.7	2.1	8.1	0.0	2.7	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS1595	PF12760.2	gi|298676143|ref|YP_003727892.1|	-	1.5	8.6	6.5	4.1	7.2	4.5	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DsbD_2	PF13386.1	gi|298676144|ref|YP_003727893.1|	-	0.0085	15.8	0.3	0.0092	15.7	0.2	1.0	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF2207	PF09972.4	gi|298676144|ref|YP_003727893.1|	-	0.063	11.8	0.2	0.068	11.7	0.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Tetraspannin	PF00335.15	gi|298676144|ref|YP_003727893.1|	-	0.3	10.3	4.0	0.4	9.9	2.8	1.1	1	0	0	1	1	1	0	Tetraspanin	family
DUF872	PF05915.7	gi|298676144|ref|YP_003727893.1|	-	1.1	9.1	3.5	1.5	8.7	2.4	1.2	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
Epimerase	PF01370.16	gi|298676145|ref|YP_003727894.1|	-	3.5e-58	196.8	0.0	1.8e-57	194.5	0.0	1.8	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.10	gi|298676145|ref|YP_003727894.1|	-	1.8e-22	79.6	0.8	5.1e-21	74.8	0.6	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|298676145|ref|YP_003727894.1|	-	7.4e-22	77.3	0.0	1e-21	76.9	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.12	gi|298676145|ref|YP_003727894.1|	-	1.7e-12	46.8	0.0	2.2e-12	46.4	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|298676145|ref|YP_003727894.1|	-	2.7e-11	42.8	0.0	1.8e-07	30.3	0.0	2.1	2	0	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|298676145|ref|YP_003727894.1|	-	4.9e-11	42.9	0.0	1e-10	41.9	0.0	1.6	1	1	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|298676145|ref|YP_003727894.1|	-	3.8e-07	30.1	0.2	0.0002	21.2	0.1	2.5	1	1	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|298676145|ref|YP_003727894.1|	-	0.0001	21.6	0.3	0.00087	18.6	0.0	2.1	2	0	0	2	2	2	1	NmrA-like	family
3HCDH_N	PF02737.13	gi|298676145|ref|YP_003727894.1|	-	0.003	17.2	0.0	0.0058	16.3	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|298676145|ref|YP_003727894.1|	-	0.042	13.5	0.2	0.98	9.0	0.0	2.3	1	1	1	2	2	2	0	KR	domain
Pyr_redox	PF00070.22	gi|298676145|ref|YP_003727894.1|	-	0.052	13.9	0.0	0.16	12.3	0.0	1.8	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Glycos_transf_2	PF00535.21	gi|298676146|ref|YP_003727895.1|	-	8.9e-24	84.0	0.2	1.4e-23	83.4	0.2	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|298676146|ref|YP_003727895.1|	-	4.9e-05	23.2	0.1	7.2e-05	22.6	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|298676146|ref|YP_003727895.1|	-	0.0014	18.9	0.0	0.0082	16.4	0.0	2.0	1	1	1	2	2	2	1	Glycosyl	transferase	family	2
Claudin_2	PF13903.1	gi|298676146|ref|YP_003727895.1|	-	0.11	12.1	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
FtsX	PF02687.16	gi|298676146|ref|YP_003727895.1|	-	0.23	11.2	4.0	0.38	10.5	2.8	1.2	1	0	0	1	1	1	0	FtsX-like	permease	family
DUF373	PF04123.8	gi|298676146|ref|YP_003727895.1|	-	3.8	6.4	7.0	0.59	9.0	1.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF373)
PepSY_TM	PF03929.11	gi|298676146|ref|YP_003727895.1|	-	4.2	7.9	8.0	1	9.8	1.0	2.3	2	0	0	2	2	2	0	PepSY-associated	TM	helix
Glycos_transf_2	PF00535.21	gi|298676147|ref|YP_003727896.1|	-	4.2e-28	98.1	0.3	7.2e-28	97.3	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|298676147|ref|YP_003727896.1|	-	2e-18	67.0	0.0	3.1e-18	66.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|298676147|ref|YP_003727896.1|	-	5e-15	55.3	0.1	7.8e-15	54.7	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|298676147|ref|YP_003727896.1|	-	3.9e-13	49.5	0.1	5.6e-13	49.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_4	PF13704.1	gi|298676147|ref|YP_003727896.1|	-	0.00021	21.5	0.2	0.0016	18.6	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Anp1	PF03452.9	gi|298676147|ref|YP_003727896.1|	-	0.072	12.2	0.1	0.13	11.3	0.0	1.4	2	0	0	2	2	2	0	Anp1
AMP-binding	PF00501.23	gi|298676148|ref|YP_003727897.1|	-	1.5e-05	23.6	0.0	2.1e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
DUF458	PF04308.7	gi|298676148|ref|YP_003727897.1|	-	0.0076	15.9	0.2	0.017	14.8	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF458)
Glycos_transf_1	PF00534.15	gi|298676149|ref|YP_003727898.1|	-	1.6e-35	122.0	0.6	3.3e-35	121.0	0.4	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|298676149|ref|YP_003727898.1|	-	5.8e-17	62.1	0.0	1.1e-16	61.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|298676149|ref|YP_003727898.1|	-	2.5e-08	34.0	0.0	6e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|298676149|ref|YP_003727898.1|	-	2.4e-05	24.5	0.0	3.4e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|298676149|ref|YP_003727898.1|	-	3e-05	23.8	0.0	0.00017	21.3	0.0	2.0	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.15	gi|298676150|ref|YP_003727899.1|	-	2.6e-38	131.1	0.5	3.4e-37	127.4	0.3	2.4	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|298676150|ref|YP_003727899.1|	-	1.8e-14	54.0	0.0	3.2e-14	53.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|298676150|ref|YP_003727899.1|	-	1.4e-08	34.6	0.0	4.1e-08	33.1	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|298676150|ref|YP_003727899.1|	-	0.00012	22.2	0.0	0.00062	19.9	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
DUF1359	PF07097.6	gi|298676150|ref|YP_003727899.1|	-	0.018	15.0	0.4	0.06	13.3	0.2	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1359)
Glyco_trans_4_4	PF13579.1	gi|298676150|ref|YP_003727899.1|	-	0.025	14.7	0.0	0.035	14.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
DUF4649	PF15507.1	gi|298676150|ref|YP_003727899.1|	-	0.042	13.6	0.0	0.13	12.0	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4649)
Glycos_transf_2	PF00535.21	gi|298676152|ref|YP_003727901.1|	-	2.3e-44	151.0	0.7	3.9e-44	150.3	0.5	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|298676152|ref|YP_003727901.1|	-	7.5e-21	74.9	0.0	1.6e-20	73.8	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|298676152|ref|YP_003727901.1|	-	2.2e-20	72.9	5.4	2.6e-20	72.6	3.8	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
GNT-I	PF03071.10	gi|298676152|ref|YP_003727901.1|	-	5.1e-05	22.0	2.2	0.0021	16.7	0.1	2.1	2	0	0	2	2	2	2	GNT-I	family
TPR_8	PF13181.1	gi|298676152|ref|YP_003727901.1|	-	0.0033	17.1	0.1	0.01	15.5	0.1	1.9	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_11	PF13414.1	gi|298676152|ref|YP_003727901.1|	-	0.012	15.1	0.1	0.043	13.4	0.0	1.9	2	0	0	2	2	2	0	TPR	repeat
NTR2	PF15458.1	gi|298676152|ref|YP_003727901.1|	-	0.017	14.4	0.4	0.023	13.9	0.3	1.2	1	0	0	1	1	1	0	Nineteen	complex-related	protein	2
TPR_1	PF00515.23	gi|298676152|ref|YP_003727901.1|	-	0.032	13.8	0.0	0.074	12.6	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|298676152|ref|YP_003727901.1|	-	0.037	13.9	0.0	0.077	12.9	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Glyco_tranf_2_4	PF13704.1	gi|298676152|ref|YP_003727901.1|	-	0.049	13.9	0.0	0.1	12.9	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
NTP_transferase	PF00483.18	gi|298676152|ref|YP_003727901.1|	-	0.06	12.6	0.0	0.092	12.0	0.0	1.2	1	0	0	1	1	1	0	Nucleotidyl	transferase
Glycos_transf_1	PF00534.15	gi|298676153|ref|YP_003727902.1|	-	3.4e-42	143.7	0.0	6.1e-42	142.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|298676153|ref|YP_003727902.1|	-	9e-14	51.4	5.4	2.3e-08	33.9	0.4	2.7	1	1	1	2	2	2	2	Glycosyl	transferase	4-like
Glyco_trans_1_4	PF13692.1	gi|298676153|ref|YP_003727902.1|	-	3e-12	46.8	0.0	4.3e-12	46.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|298676153|ref|YP_003727902.1|	-	3.7e-08	33.5	0.0	8.6e-08	32.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|298676153|ref|YP_003727902.1|	-	3.9e-07	30.3	0.0	3.4e-06	27.2	0.0	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|298676153|ref|YP_003727902.1|	-	4.8e-05	23.1	0.0	0.015	15.0	0.0	2.9	3	0	0	3	3	3	1	Glycosyltransferase	Family	4
Glyco_transf_5	PF08323.6	gi|298676153|ref|YP_003727902.1|	-	0.039	13.4	0.1	0.081	12.4	0.1	1.5	1	1	0	1	1	1	0	Starch	synthase	catalytic	domain
Polysacc_synt	PF01943.12	gi|298676154|ref|YP_003727903.1|	-	8.1e-21	74.4	34.3	8.1e-21	74.4	23.7	2.6	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.1	gi|298676154|ref|YP_003727903.1|	-	1.7e-18	66.8	26.6	1.7e-18	66.8	18.5	3.4	3	0	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.1	gi|298676154|ref|YP_003727903.1|	-	6.7e-16	58.5	19.5	6.7e-16	58.5	13.5	2.3	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
MVIN	PF03023.9	gi|298676154|ref|YP_003727903.1|	-	1.6e-08	33.3	48.4	5.4e-08	31.6	29.7	2.9	1	1	2	3	3	3	1	MviN-like	protein
Sulfotransfer_3	PF13469.1	gi|298676155|ref|YP_003727904.1|	-	0.00042	21.2	0.0	0.0028	18.5	0.0	2.0	1	1	0	1	1	1	1	Sulfotransferase	family
Proteasom_PSMB	PF10508.4	gi|298676155|ref|YP_003727904.1|	-	0.0067	14.7	0.1	0.0097	14.2	0.1	1.2	1	0	0	1	1	1	1	Proteasome	non-ATPase	26S	subunit
NTP_transferase	PF00483.18	gi|298676156|ref|YP_003727905.1|	-	9.4e-43	146.2	0.0	1.1e-42	146.1	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|298676156|ref|YP_003727905.1|	-	1.9e-15	57.3	0.0	2.4e-15	56.9	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|298676156|ref|YP_003727905.1|	-	8.2e-08	32.0	0.1	4.8e-07	29.5	0.0	2.1	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|298676156|ref|YP_003727905.1|	-	0.0016	18.1	0.1	0.0021	17.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
OrfB_IS605	PF01385.14	gi|298676158|ref|YP_003727907.1|	-	2.9e-56	190.4	7.0	3.8e-56	190.0	4.8	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|298676158|ref|YP_003727907.1|	-	2.3e-11	43.1	0.0	4.7e-11	42.1	0.0	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Glyco_hydro_97	PF10566.4	gi|298676158|ref|YP_003727907.1|	-	0.0025	16.9	0.1	0.005	15.9	0.0	1.5	1	0	0	1	1	1	1	Glycoside	hydrolase	97
UPF0081	PF03652.10	gi|298676158|ref|YP_003727907.1|	-	0.1	12.7	0.0	0.22	11.6	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0081)
Mrr_cat	PF04471.7	gi|298676159|ref|YP_003727908.1|	-	2.5e-28	98.1	0.1	3.4e-26	91.3	0.1	2.3	2	0	0	2	2	2	2	Restriction	endonuclease
CARD	PF00619.16	gi|298676159|ref|YP_003727908.1|	-	0.0019	18.0	1.5	2.7	7.8	0.2	3.5	2	1	1	3	3	3	2	Caspase	recruitment	domain
FAD_binding_1	PF00667.15	gi|298676159|ref|YP_003727908.1|	-	0.0024	17.3	1.6	0.0041	16.5	0.2	1.9	1	1	1	2	2	2	1	FAD	binding	domain
AMA-1	PF02430.10	gi|298676159|ref|YP_003727908.1|	-	0.016	14.1	0.3	0.024	13.5	0.2	1.2	1	0	0	1	1	1	0	Apical	membrane	antigen	1
HEAT_PBS	PF03130.11	gi|298676159|ref|YP_003727908.1|	-	0.16	12.4	0.1	52	4.7	0.0	3.2	3	0	0	3	3	3	0	PBS	lyase	HEAT-like	repeat
Mrr_cat	PF04471.7	gi|298676160|ref|YP_003727909.1|	-	2.6e-24	85.2	0.3	5.4e-24	84.2	0.1	1.6	2	0	0	2	2	2	1	Restriction	endonuclease
BTB	PF00651.26	gi|298676160|ref|YP_003727909.1|	-	0.023	14.6	1.1	0.36	10.8	0.1	2.8	2	1	0	2	2	2	0	BTB/POZ	domain
PemK	PF02452.12	gi|298676161|ref|YP_003727910.1|	-	3.7e-13	49.6	0.0	4.1e-13	49.4	0.0	1.0	1	0	0	1	1	1	1	PemK-like	protein
Antitoxin-MazE	PF04014.13	gi|298676162|ref|YP_003727911.1|	-	1.1e-09	37.7	0.1	1.5e-09	37.3	0.1	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
MraZ	PF02381.13	gi|298676162|ref|YP_003727911.1|	-	0.055	13.2	0.1	0.069	12.9	0.0	1.3	1	0	0	1	1	1	0	MraZ	protein
DUF904	PF06005.7	gi|298676162|ref|YP_003727911.1|	-	0.19	12.0	0.5	0.19	12.0	0.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
S-layer	PF07752.6	gi|298676163|ref|YP_003727912.1|	-	4.3e-107	357.1	44.4	2e-55	187.8	9.2	4.0	3	0	0	3	3	3	2	S-layer	protein
Peptidase_S8	PF00082.17	gi|298676163|ref|YP_003727912.1|	-	7.3e-48	163.1	8.4	7.3e-48	163.1	5.8	3.6	2	1	0	2	2	2	1	Subtilase	family
Big_3_4	PF13754.1	gi|298676163|ref|YP_003727912.1|	-	2.9e-07	30.7	7.3	2.4e-05	24.5	2.9	10.2	10	0	0	10	10	10	3	Bacterial	Ig-like	domain	(group	3)
FlgD_ig	PF13860.1	gi|298676163|ref|YP_003727912.1|	-	0.0002	21.0	0.3	0.0002	21.0	0.2	6.1	6	0	0	6	6	6	1	FlgD	Ig-like	domain
DUF2271	PF10029.4	gi|298676163|ref|YP_003727912.1|	-	0.0007	19.0	4.4	0.0071	15.8	0.1	3.9	4	0	0	4	4	4	1	Predicted	periplasmic	protein	(DUF2271)
DUF4625	PF15418.1	gi|298676163|ref|YP_003727912.1|	-	0.0092	16.1	21.6	0.18	11.9	0.3	6.4	5	1	1	6	6	6	2	Domain	of	unknown	function	(DUF4625)
Miro	PF08477.8	gi|298676166|ref|YP_003727915.1|	-	0.02	15.3	0.0	4.1	7.9	0.0	2.4	2	0	0	2	2	2	0	Miro-like	protein
Tubulin_2	PF13809.1	gi|298676167|ref|YP_003727916.1|	-	1.4e-09	37.3	0.3	1.4e-09	37.3	0.2	2.7	2	2	1	3	3	3	1	Tubulin	like
Tubulin	PF00091.20	gi|298676167|ref|YP_003727916.1|	-	1.1e-06	28.6	3.7	3e-06	27.2	0.0	3.3	3	0	0	3	3	3	1	Tubulin/FtsZ	family,	GTPase	domain
DUF1499	PF07386.6	gi|298676167|ref|YP_003727916.1|	-	0.062	13.4	0.9	2.8	8.1	0.0	2.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1499)
Fe-ADH	PF00465.14	gi|298676167|ref|YP_003727916.1|	-	1.4	7.5	2.7	22	3.5	0.0	3.0	3	0	0	3	3	3	0	Iron-containing	alcohol	dehydrogenase
Arch_flagellin	PF01917.11	gi|298676168|ref|YP_003727917.1|	-	6.4e-42	143.3	10.8	1.5e-40	138.8	7.5	2.1	1	1	0	1	1	1	1	Archaebacterial	flagellin
DUF1628	PF07790.6	gi|298676168|ref|YP_003727917.1|	-	2.4	8.9	6.8	0.78	10.5	1.7	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
Clr5	PF14420.1	gi|298676169|ref|YP_003727918.1|	-	0.027	14.3	0.2	0.035	13.9	0.1	1.2	1	0	0	1	1	1	0	Clr5	domain
Orthopox_F14	PF06076.7	gi|298676169|ref|YP_003727918.1|	-	0.32	11.0	6.9	0.69	10.0	4.7	1.7	1	1	0	1	1	1	0	Orthopoxvirus	F14	protein
OrfB_IS605	PF01385.14	gi|298676171|ref|YP_003727920.1|	-	9.9e-52	175.5	1.7	9.9e-52	175.5	1.2	1.6	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|298676171|ref|YP_003727920.1|	-	3.3e-11	42.6	0.1	1.1e-10	40.9	0.1	2.0	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
UPF0081	PF03652.10	gi|298676171|ref|YP_003727920.1|	-	0.0089	16.1	0.0	0.018	15.1	0.0	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0081)
AAA_12	PF13087.1	gi|298676172|ref|YP_003727921.1|	-	4.4e-14	52.3	3.6	7.4e-13	48.3	1.2	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_11	PF13086.1	gi|298676172|ref|YP_003727921.1|	-	4e-13	49.5	0.0	7.9e-13	48.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF559	PF04480.7	gi|298676172|ref|YP_003727921.1|	-	0.00023	20.7	0.0	0.0007	19.2	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF559)
RAP	PF08373.5	gi|298676172|ref|YP_003727921.1|	-	0.0012	18.5	1.1	0.0032	17.2	0.1	2.4	2	0	0	2	2	2	1	RAP	domain
AAA_30	PF13604.1	gi|298676172|ref|YP_003727921.1|	-	0.0068	15.9	0.0	0.015	14.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.13	gi|298676172|ref|YP_003727921.1|	-	0.013	15.0	0.0	0.029	13.9	0.0	1.5	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
PAS_3	PF08447.6	gi|298676173|ref|YP_003727922.1|	-	4.7e-42	142.0	0.7	1.3e-20	73.2	0.3	3.5	3	0	0	3	3	3	2	PAS	fold
PAS_9	PF13426.1	gi|298676173|ref|YP_003727922.1|	-	1.8e-35	121.4	2.9	9.1e-15	54.9	0.0	4.1	4	0	0	4	4	4	4	PAS	domain
PAS	PF00989.19	gi|298676173|ref|YP_003727922.1|	-	2.6e-25	88.3	0.1	3.5e-15	55.7	0.0	4.1	4	0	0	4	4	4	3	PAS	fold
PAS_4	PF08448.5	gi|298676173|ref|YP_003727922.1|	-	3.3e-25	88.2	0.0	1.7e-10	40.8	0.0	4.2	4	0	0	4	4	4	4	PAS	fold
PAS_11	PF14598.1	gi|298676173|ref|YP_003727922.1|	-	4.2e-09	36.3	0.0	2.6e-06	27.3	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS_8	PF13188.1	gi|298676173|ref|YP_003727922.1|	-	3e-08	33.2	0.0	0.17	11.7	0.0	4.3	4	0	0	4	4	4	2	PAS	domain
PAS_7	PF12860.2	gi|298676173|ref|YP_003727922.1|	-	0.013	15.5	1.7	1.4	8.9	0.0	4.2	4	2	0	4	4	4	0	PAS	fold
HisKA_2	PF07568.7	gi|298676174|ref|YP_003727923.1|	-	2.5e-30	104.1	5.1	2.5e-30	104.1	3.5	2.3	2	1	0	2	2	2	1	Histidine	kinase
HATPase_c	PF02518.21	gi|298676174|ref|YP_003727923.1|	-	4.7e-10	39.1	0.1	1.9e-09	37.2	0.0	2.0	2	1	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HWE_HK	PF07536.9	gi|298676174|ref|YP_003727923.1|	-	3.8e-07	30.4	1.8	1.1e-06	28.9	0.2	2.3	2	0	0	2	2	2	1	HWE	histidine	kinase
HATPase_c_2	PF13581.1	gi|298676174|ref|YP_003727923.1|	-	9.1e-05	22.2	0.0	0.00017	21.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Apolipoprotein	PF01442.13	gi|298676174|ref|YP_003727923.1|	-	0.0014	18.1	2.8	0.0018	17.7	2.0	1.2	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
Pepsin-I3	PF06394.8	gi|298676174|ref|YP_003727923.1|	-	0.0069	16.0	1.4	0.012	15.2	1.0	1.3	1	0	0	1	1	1	1	Pepsin	inhibitor-3-like	repeated	domain
SEO_N	PF14576.1	gi|298676174|ref|YP_003727923.1|	-	0.011	14.9	3.2	0.015	14.5	2.0	1.3	1	1	0	1	1	1	0	Sieve	element	occlusion	N-terminus
HATPase_c_3	PF13589.1	gi|298676174|ref|YP_003727923.1|	-	0.02	14.5	0.7	0.13	11.9	0.0	2.4	3	0	0	3	3	3	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Phage_GP20	PF06810.6	gi|298676174|ref|YP_003727923.1|	-	0.037	13.4	6.7	0.057	12.8	4.6	1.3	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
Gluconate_2-dh3	PF13618.1	gi|298676174|ref|YP_003727923.1|	-	0.13	12.4	0.7	0.28	11.3	0.5	1.6	1	1	1	2	2	2	0	Gluconate	2-dehydrogenase	subunit	3
DUF1269	PF06897.7	gi|298676174|ref|YP_003727923.1|	-	0.16	11.9	1.6	0.45	10.5	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1269)
MCM_N	PF14551.1	gi|298676174|ref|YP_003727923.1|	-	0.64	10.5	6.0	1.3	9.5	4.1	1.5	1	0	0	1	1	1	0	MCM	N-terminal	domain
EAP30	PF04157.11	gi|298676174|ref|YP_003727923.1|	-	0.83	8.7	5.8	2.6	7.1	4.0	1.8	1	1	0	1	1	1	0	EAP30/Vps36	family
CorA	PF01544.13	gi|298676174|ref|YP_003727923.1|	-	4.1	6.3	9.7	12	4.8	6.5	1.7	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Fib_alpha	PF08702.5	gi|298676174|ref|YP_003727923.1|	-	5.5	7.1	8.6	5	7.2	5.2	1.5	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
DUF457	PF04307.9	gi|298676176|ref|YP_003727925.1|	-	5.8e-14	51.7	7.6	7.1e-14	51.4	5.2	1.1	1	0	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
NDUF_C2	PF06374.6	gi|298676176|ref|YP_003727925.1|	-	0.053	13.5	1.0	2.5	8.1	0.1	2.3	2	0	0	2	2	2	0	NADH-ubiquinone	oxidoreductase	subunit	b14.5b	(NDUFC2)
TF_Zn_Ribbon	PF08271.7	gi|298676177|ref|YP_003727926.1|	-	0.001	18.3	0.2	0.0016	17.7	0.1	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.1	gi|298676177|ref|YP_003727926.1|	-	0.0067	16.6	0.3	0.0072	16.6	0.2	1.1	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
FlhC	PF05280.6	gi|298676177|ref|YP_003727926.1|	-	0.014	14.8	0.3	0.014	14.8	0.2	1.0	1	0	0	1	1	1	0	Flagellar	transcriptional	activator	(FlhC)
DUF1272	PF06906.6	gi|298676177|ref|YP_003727926.1|	-	0.015	15.0	2.8	0.74	9.7	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DNA_ligase_ZBD	PF03119.11	gi|298676177|ref|YP_003727926.1|	-	0.034	13.8	0.6	0.19	11.4	0.2	2.0	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-RING_3	PF14369.1	gi|298676177|ref|YP_003727926.1|	-	0.042	13.8	0.1	0.073	13.0	0.0	1.5	1	0	0	1	1	1	0	zinc-finger
DUF4428	PF14471.1	gi|298676177|ref|YP_003727926.1|	-	0.069	12.9	1.4	0.11	12.2	1.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
Ecl1	PF12855.2	gi|298676177|ref|YP_003727926.1|	-	0.075	12.3	0.3	0.081	12.2	0.2	1.2	1	0	0	1	1	1	0	Life-span	regulatory	factor
zf-HIT	PF04438.11	gi|298676177|ref|YP_003727926.1|	-	0.088	12.4	0.1	0.17	11.5	0.1	1.5	1	1	0	1	1	1	0	HIT	zinc	finger
zf-CSL	PF05207.8	gi|298676177|ref|YP_003727926.1|	-	0.13	11.7	0.5	0.15	11.5	0.3	1.1	1	0	0	1	1	1	0	CSL	zinc	finger
zf-FCS	PF06467.9	gi|298676177|ref|YP_003727926.1|	-	0.15	11.6	0.8	0.53	9.9	0.5	1.8	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Prok-RING_1	PF14446.1	gi|298676177|ref|YP_003727926.1|	-	0.16	11.7	0.8	0.28	10.9	0.5	1.6	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DUF1616	PF07760.6	gi|298676178|ref|YP_003727927.1|	-	7.1e-111	369.9	5.3	8e-111	369.7	3.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
MFS_1	PF07690.11	gi|298676178|ref|YP_003727927.1|	-	2e-06	26.7	2.2	3.2e-06	26.1	1.5	1.2	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
CbiQ	PF02361.11	gi|298676178|ref|YP_003727927.1|	-	0.04	13.4	0.1	0.083	12.4	0.0	1.5	1	1	0	1	1	1	0	Cobalt	transport	protein
DUF3366	PF11846.3	gi|298676178|ref|YP_003727927.1|	-	0.2	11.4	0.7	1.3	8.8	0.0	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3366)
Abi	PF02517.11	gi|298676179|ref|YP_003727928.1|	-	1.9e-17	63.1	6.1	1.9e-17	63.1	4.2	2.5	2	1	0	2	2	2	1	CAAX	protease	self-immunity
Fip1	PF05182.8	gi|298676179|ref|YP_003727928.1|	-	0.16	11.2	0.5	0.29	10.4	0.3	1.4	1	0	0	1	1	1	0	Fip1	motif
DUF502	PF04367.8	gi|298676179|ref|YP_003727928.1|	-	4.3	7.1	8.8	14	5.4	1.1	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF502)
NfeD	PF01957.13	gi|298676180|ref|YP_003727929.1|	-	0.087	12.9	1.1	0.11	12.6	0.6	1.3	1	1	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF212	PF02681.9	gi|298676180|ref|YP_003727929.1|	-	0.19	11.4	1.1	0.25	11.0	0.6	1.3	1	1	0	1	1	1	0	Divergent	PAP2	family
Y_Y_Y	PF07495.8	gi|298676181|ref|YP_003727930.1|	-	2.3e-06	27.2	0.1	0.00027	20.6	0.0	3.0	2	0	0	2	2	2	2	Y_Y_Y	domain
UPF0228	PF05727.6	gi|298676183|ref|YP_003727932.1|	-	1.4e-26	92.7	8.9	2.1e-26	92.1	6.2	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0228)
Arch_flagellin	PF01917.11	gi|298676183|ref|YP_003727932.1|	-	0.022	14.3	0.4	0.022	14.3	0.2	1.9	1	1	1	2	2	2	0	Archaebacterial	flagellin
Peptidase_C39	PF03412.10	gi|298676183|ref|YP_003727932.1|	-	0.032	14.0	0.3	0.049	13.4	0.2	1.3	1	0	0	1	1	1	0	Peptidase	C39	family
DUF1129	PF06570.6	gi|298676185|ref|YP_003727934.1|	-	0.032	13.5	0.3	0.068	12.4	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
DUF1628	PF07790.6	gi|298676186|ref|YP_003727935.1|	-	6.8e-05	23.5	0.1	0.00021	21.9	0.0	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
UPF0228	PF05727.6	gi|298676188|ref|YP_003727937.1|	-	2.3e-25	88.8	2.0	3.9e-25	88.0	1.4	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0228)
DUF4529	PF15032.1	gi|298676188|ref|YP_003727937.1|	-	0.072	11.6	0.0	0.097	11.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4529)
DUF1027	PF06265.6	gi|298676188|ref|YP_003727937.1|	-	0.58	10.0	4.3	8.6	6.3	0.1	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1027)
OppC_N	PF12911.2	gi|298676189|ref|YP_003727938.1|	-	0.97	8.8	5.9	1.1	8.6	0.4	2.1	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF4017	PF13209.1	gi|298676189|ref|YP_003727938.1|	-	2.8	7.8	6.9	4.5	7.1	4.8	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4017)
Pox_A14	PF05767.7	gi|298676189|ref|YP_003727938.1|	-	2.9	7.9	5.8	4.2	7.3	4.0	1.3	1	1	0	1	1	1	0	Poxvirus	virion	envelope	protein	A14
YjgP_YjgQ	PF03739.9	gi|298676189|ref|YP_003727938.1|	-	3	6.4	8.9	2.1	6.9	1.1	2.0	1	1	1	2	2	2	0	Predicted	permease	YjgP/YjgQ	family
Gate	PF07670.9	gi|298676189|ref|YP_003727938.1|	-	9.1	6.2	6.5	13	5.7	4.5	1.3	1	1	0	1	1	1	0	Nucleoside	recognition
DUF2246	PF10229.4	gi|298676190|ref|YP_003727939.1|	-	0.12	11.6	0.0	0.24	10.6	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2246)
GRP	PF07172.6	gi|298676191|ref|YP_003727940.1|	-	0.069	13.6	0.4	0.076	13.4	0.3	1.0	1	0	0	1	1	1	0	Glycine	rich	protein	family
NosD	PF05048.8	gi|298676192|ref|YP_003727941.1|	-	4.4e-32	111.1	93.7	1.3e-17	63.7	27.2	3.0	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.1	gi|298676192|ref|YP_003727941.1|	-	2.5e-21	76.0	95.4	2.7e-15	56.4	30.6	3.2	1	1	2	3	3	3	2	Right	handed	beta	helix	region
FixG_C	PF11614.3	gi|298676194|ref|YP_003727943.1|	-	4.7e-13	49.2	51.0	0.00033	20.7	0.7	7.9	5	2	2	7	7	7	6	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
DUF11	PF01345.13	gi|298676194|ref|YP_003727943.1|	-	0.00035	20.5	3.2	0.00035	20.5	2.2	8.2	7	1	1	8	8	8	4	Domain	of	unknown	function	DUF11
Pentapeptide_4	PF13599.1	gi|298676194|ref|YP_003727943.1|	-	0.0047	16.6	1.1	0.016	14.9	0.1	2.5	2	0	0	2	2	2	1	Pentapeptide	repeats	(9	copies)
Fn3-like	PF14310.1	gi|298676194|ref|YP_003727943.1|	-	0.035	14.0	0.0	16	5.5	0.0	4.4	4	0	0	4	4	4	0	Fibronectin	type	III-like	domain
DUF1628	PF07790.6	gi|298676195|ref|YP_003727944.1|	-	6.7e-25	87.6	1.5	6.7e-25	87.6	1.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
Response_reg	PF00072.19	gi|298676196|ref|YP_003727945.1|	-	1.2e-26	92.9	0.1	1.3e-26	92.7	0.0	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
DUF2672	PF10878.3	gi|298676196|ref|YP_003727945.1|	-	0.12	12.1	1.7	0.24	11.1	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2672)
DUF1947	PF09183.5	gi|298676197|ref|YP_003727946.1|	-	0.005	16.5	0.2	1.3	8.8	0.0	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1947)
Ras	PF00071.17	gi|298676197|ref|YP_003727946.1|	-	0.053	12.9	0.1	0.091	12.1	0.1	1.4	1	0	0	1	1	1	0	Ras	family
Prenylcys_lyase	PF07156.9	gi|298676198|ref|YP_003727947.1|	-	0.009	14.9	1.1	0.011	14.6	0.8	1.1	1	0	0	1	1	1	1	Prenylcysteine	lyase
GatB_Yqey	PF02637.13	gi|298676198|ref|YP_003727947.1|	-	0.014	15.1	1.6	0.016	14.8	0.5	1.6	2	0	0	2	2	2	0	GatB	domain
SNF2_assoc	PF08455.5	gi|298676199|ref|YP_003727948.1|	-	0.0023	16.5	0.6	0.0026	16.3	0.4	1.1	1	0	0	1	1	1	1	Bacterial	SNF2	helicase	associated
GatB_Yqey	PF02637.13	gi|298676199|ref|YP_003727948.1|	-	0.015	15.0	0.7	0.018	14.7	0.5	1.1	1	0	0	1	1	1	0	GatB	domain
UBA_e1_C	PF09358.5	gi|298676201|ref|YP_003727950.1|	-	0.08	13.1	0.1	0.091	12.9	0.1	1.2	1	0	0	1	1	1	0	Ubiquitin-activating	enzyme	e1	C-terminal	domain
EamA	PF00892.15	gi|298676202|ref|YP_003727951.1|	-	3.1e-11	43.4	42.1	7e-07	29.3	9.6	3.0	3	2	0	3	3	3	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|298676202|ref|YP_003727951.1|	-	2.6e-09	37.2	11.0	2.6e-09	37.2	7.6	3.2	3	1	0	3	3	3	1	Multidrug	resistance	efflux	transporter
DUF2621	PF11084.3	gi|298676202|ref|YP_003727951.1|	-	0.26	10.9	1.7	0.76	9.4	1.2	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2621)
Rer1	PF03248.8	gi|298676204|ref|YP_003727953.1|	-	0.067	12.7	2.4	0.075	12.6	1.7	1.0	1	0	0	1	1	1	0	Rer1	family
DDE_3	PF13358.1	gi|298676205|ref|YP_003727954.1|	-	6.1e-22	77.9	0.3	8.7e-22	77.4	0.1	1.4	2	0	0	2	2	2	1	DDE	superfamily	endonuclease
rve	PF00665.21	gi|298676205|ref|YP_003727954.1|	-	2.1e-08	34.2	0.0	3.3e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_1	PF03184.14	gi|298676205|ref|YP_003727954.1|	-	1.1e-06	27.9	0.1	1.6e-06	27.4	0.1	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DDE_Tnp_ISAZ013	PF07592.6	gi|298676205|ref|YP_003727954.1|	-	0.069	11.8	0.0	0.092	11.4	0.0	1.1	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
TetR_C_2	PF08361.6	gi|298676205|ref|YP_003727954.1|	-	0.12	12.3	0.1	0.51	10.2	0.0	1.8	2	0	0	2	2	2	0	MAATS-type	transcriptional	repressor,	C-terminal	region
HTH_29	PF13551.1	gi|298676206|ref|YP_003727955.1|	-	1.4e-14	54.1	0.2	6.7e-14	51.9	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|298676206|ref|YP_003727955.1|	-	7.6e-09	36.2	0.2	7.6e-09	36.2	0.1	2.0	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.1	gi|298676206|ref|YP_003727955.1|	-	3.2e-08	32.9	0.1	1.2e-07	31.1	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_33	PF13592.1	gi|298676206|ref|YP_003727955.1|	-	1.7e-07	30.6	1.1	5.8e-07	28.9	0.0	2.4	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|298676206|ref|YP_003727955.1|	-	1.9e-07	30.9	0.0	5.8e-07	29.4	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF559	PF04480.7	gi|298676206|ref|YP_003727955.1|	-	0.0017	18.0	0.3	0.0052	16.4	0.1	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF559)
HTH_Tnp_IS630	PF01710.11	gi|298676206|ref|YP_003727955.1|	-	0.0041	16.7	0.8	0.0088	15.7	0.2	1.6	1	1	1	2	2	2	1	Transposase
LZ_Tnp_IS481	PF13011.1	gi|298676206|ref|YP_003727955.1|	-	0.13	12.6	0.0	0.21	11.9	0.0	1.4	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_Tnp_1_2	PF13022.1	gi|298676206|ref|YP_003727955.1|	-	1.3	8.8	5.3	8	6.2	0.0	2.8	2	1	1	3	3	3	0	Helix-turn-helix	of	insertion	element	transposase
PAS_9	PF13426.1	gi|298676207|ref|YP_003727956.1|	-	1.4e-25	89.7	0.3	7.3e-12	45.5	0.1	2.5	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|298676207|ref|YP_003727956.1|	-	4.9e-16	58.7	0.0	1.4e-07	31.5	0.0	2.2	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.1	gi|298676207|ref|YP_003727956.1|	-	5e-15	54.7	0.1	5.2e-07	29.3	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.19	gi|298676207|ref|YP_003727956.1|	-	3.7e-13	49.2	0.1	1.1e-05	25.1	0.0	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_3	PF08447.6	gi|298676207|ref|YP_003727956.1|	-	1.1e-05	25.4	0.0	0.0096	15.9	0.0	2.7	2	1	0	2	2	2	2	PAS	fold
Glug	PF07581.7	gi|298676209|ref|YP_003727958.1|	-	4.4e-48	158.3	187.2	0.00044	20.2	1.8	25.7	26	0	0	26	26	26	20	The	GLUG	motif
NosD	PF05048.8	gi|298676209|ref|YP_003727958.1|	-	4.3e-33	114.4	103.7	6.7e-26	90.8	26.2	6.8	3	2	2	5	5	5	2	Periplasmic	copper-binding	protein	(NosD)
Trypan_PARP	PF05887.6	gi|298676209|ref|YP_003727958.1|	-	0.038	13.8	3.8	0.12	12.2	2.7	1.8	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
Pex19	PF04614.7	gi|298676210|ref|YP_003727959.1|	-	0.0072	15.9	3.5	0.0082	15.7	2.4	1.0	1	0	0	1	1	1	1	Pex19	protein	family
KLRAQ	PF10205.4	gi|298676210|ref|YP_003727959.1|	-	1.3	9.0	5.3	0.35	10.9	0.3	2.2	1	1	1	2	2	2	0	Predicted	coiled-coil	domain-containing	protein
AAA_23	PF13476.1	gi|298676210|ref|YP_003727959.1|	-	3.2	8.0	10.0	4	7.7	6.9	1.1	1	0	0	1	1	1	0	AAA	domain
Orthopox_B11R	PF07033.6	gi|298676211|ref|YP_003727960.1|	-	0.057	12.8	0.8	0.12	11.9	0.5	1.5	1	0	0	1	1	1	0	Orthopoxvirus	B11R	protein
DUF3599	PF12206.3	gi|298676212|ref|YP_003727961.1|	-	0.02	15.1	0.6	0.032	14.4	0.2	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3599)
DUF1628	PF07790.6	gi|298676212|ref|YP_003727961.1|	-	0.043	14.5	0.5	0.16	12.7	0.4	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
ThiS	PF02597.15	gi|298676212|ref|YP_003727961.1|	-	0.1	13.0	0.0	0.18	12.2	0.0	1.5	1	0	0	1	1	1	0	ThiS	family
Plasmid_stabil	PF05016.9	gi|298676214|ref|YP_003727963.1|	-	2.7e-06	27.6	0.4	4.1e-06	27.0	0.3	1.3	1	1	0	1	1	1	1	Plasmid	stabilisation	system	protein
Gp49	PF05973.9	gi|298676214|ref|YP_003727963.1|	-	5.9e-06	26.2	0.1	6.8e-06	26.0	0.0	1.1	1	0	0	1	1	1	1	Phage	derived	protein	Gp49-like	(DUF891)
DUF4364	PF14277.1	gi|298676214|ref|YP_003727963.1|	-	0.0019	17.8	0.3	0.0022	17.6	0.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF2325	PF10087.4	gi|298676214|ref|YP_003727963.1|	-	0.055	13.3	0.0	0.074	12.8	0.0	1.3	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2325)
Plasmid_killer	PF05015.8	gi|298676214|ref|YP_003727963.1|	-	0.099	12.8	0.0	0.12	12.5	0.0	1.3	1	0	0	1	1	1	0	Plasmid	maintenance	system	killer	protein
Gag_p24	PF00607.15	gi|298676215|ref|YP_003727964.1|	-	0.0018	17.8	0.0	0.0019	17.7	0.0	1.1	1	0	0	1	1	1	1	gag	gene	protein	p24	(core	nucleocapsid	protein)
zf-Di19	PF05605.7	gi|298676217|ref|YP_003727966.1|	-	1e-07	31.9	20.3	0.059	13.5	3.5	4.0	2	1	0	3	3	3	3	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_jaz	PF12171.3	gi|298676217|ref|YP_003727966.1|	-	1.9e-07	31.0	11.2	0.00016	21.7	1.5	4.7	5	0	0	5	5	4	2	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_4	PF13894.1	gi|298676217|ref|YP_003727966.1|	-	3.5e-06	26.9	29.9	0.018	15.3	0.1	5.2	4	1	0	4	4	4	3	C2H2-type	zinc	finger
DZR	PF12773.2	gi|298676217|ref|YP_003727966.1|	-	6.7e-05	22.6	9.8	0.007	16.1	0.7	3.2	3	0	0	3	3	3	2	Double	zinc	ribbon
Y2_Tnp	PF04986.8	gi|298676217|ref|YP_003727966.1|	-	0.00021	21.0	0.1	0.51	10.0	0.0	2.2	1	1	1	2	2	2	2	Putative	transposase
zf-C2H2	PF00096.21	gi|298676217|ref|YP_003727966.1|	-	0.0011	19.2	38.8	0.028	14.7	2.2	5.7	6	0	0	6	6	6	3	Zinc	finger,	C2H2	type
zf-C2HC_2	PF13913.1	gi|298676217|ref|YP_003727966.1|	-	0.0029	17.2	5.2	0.045	13.4	0.3	4.2	5	0	0	5	5	4	2	zinc-finger	of	a	C2HC-type
PyrI_C	PF02748.10	gi|298676217|ref|YP_003727966.1|	-	0.0039	16.6	11.3	0.047	13.1	0.1	3.2	3	1	0	3	3	3	2	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-C2H2_2	PF12756.2	gi|298676217|ref|YP_003727966.1|	-	0.0042	17.1	26.7	0.1	12.7	1.2	3.6	1	1	0	2	2	2	2	C2H2	type	zinc-finger	(2	copies)
zf-met	PF12874.2	gi|298676217|ref|YP_003727966.1|	-	0.0048	17.0	18.9	0.18	12.0	1.2	4.4	4	0	0	4	4	4	2	Zinc-finger	of	C2H2	type
zf-ribbon_3	PF13248.1	gi|298676217|ref|YP_003727966.1|	-	0.0087	15.2	5.6	0.0087	15.2	3.9	3.5	4	0	0	4	4	3	1	zinc-ribbon	domain
zf-CHCC	PF10276.4	gi|298676217|ref|YP_003727966.1|	-	0.023	14.5	1.6	0.43	10.4	0.1	4.3	4	1	1	5	5	5	0	Zinc-finger	domain
HSP33	PF01430.14	gi|298676217|ref|YP_003727966.1|	-	0.044	12.9	2.0	3.7	6.5	0.1	2.2	2	0	0	2	2	2	0	Hsp33	protein
Sgf11	PF08209.6	gi|298676217|ref|YP_003727966.1|	-	0.24	10.7	11.7	3.6	6.9	0.1	3.7	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
zf-DNA_Pol	PF08996.5	gi|298676217|ref|YP_003727966.1|	-	0.32	10.3	12.2	0.29	10.4	0.3	2.7	2	1	1	3	3	3	0	DNA	Polymerase	alpha	zinc	finger
GFA	PF04828.9	gi|298676217|ref|YP_003727966.1|	-	0.55	10.2	17.1	5.2	7.0	2.0	3.7	2	1	1	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF629	PF04780.7	gi|298676217|ref|YP_003727966.1|	-	0.67	8.4	19.1	2.3	6.6	1.8	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF629)
zf-MYND	PF01753.13	gi|298676217|ref|YP_003727966.1|	-	0.74	9.7	17.6	2.1	8.3	2.2	3.7	3	1	0	3	3	3	0	MYND	finger
zf-AN1	PF01428.11	gi|298676217|ref|YP_003727966.1|	-	4.5	7.2	34.2	0.14	12.0	2.1	3.8	4	0	0	4	4	4	0	AN1-like	Zinc	finger
DDE_3	PF13358.1	gi|298676218|ref|YP_003727967.1|	-	1e-23	83.6	0.1	1.4e-23	83.2	0.1	1.1	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
DUF387	PF04079.11	gi|298676218|ref|YP_003727967.1|	-	0.05	12.9	0.0	0.084	12.2	0.0	1.5	1	0	0	1	1	1	0	Putative	transcriptional	regulators	(Ypuh-like)
rve	PF00665.21	gi|298676218|ref|YP_003727967.1|	-	0.096	12.7	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	Integrase	core	domain
HTH_29	PF13551.1	gi|298676219|ref|YP_003727968.1|	-	3.9e-21	75.2	0.0	6.9e-21	74.4	0.0	1.4	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|298676219|ref|YP_003727968.1|	-	4.9e-07	30.4	0.0	1.1e-06	29.3	0.0	1.6	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_23	PF13384.1	gi|298676219|ref|YP_003727968.1|	-	7e-05	22.3	0.1	0.00022	20.7	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF4284	PF14112.1	gi|298676219|ref|YP_003727968.1|	-	0.004	17.6	1.0	2.5	8.5	0.1	2.2	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4284)
Clathrin	PF00637.15	gi|298676219|ref|YP_003727968.1|	-	0.028	14.0	0.3	0.048	13.2	0.2	1.4	1	0	0	1	1	1	0	Region	in	Clathrin	and	VPS
ORF6N	PF10543.4	gi|298676219|ref|YP_003727968.1|	-	0.071	13.1	0.1	4	7.5	0.0	2.3	2	0	0	2	2	2	0	ORF6N	domain
fn3	PF00041.16	gi|298676220|ref|YP_003727969.1|	-	1.8e-07	31.1	2.1	1.8e-07	31.1	1.5	3.7	3	1	0	3	3	3	1	Fibronectin	type	III	domain
Big_3_4	PF13754.1	gi|298676220|ref|YP_003727969.1|	-	3.5e-05	24.0	12.8	3.5e-05	24.0	8.8	8.8	9	2	0	9	9	9	2	Bacterial	Ig-like	domain	(group	3)
SWM_repeat	PF13753.1	gi|298676220|ref|YP_003727969.1|	-	4.5e-05	22.6	44.6	4.5e-05	22.6	30.9	4.4	2	1	1	4	4	4	2	Putative	flagellar	system-associated	repeat
Big_3_3	PF13750.1	gi|298676220|ref|YP_003727969.1|	-	0.0015	17.9	1.6	0.0015	17.9	1.1	6.2	6	2	1	7	7	7	2	Bacterial	Ig-like	domain	(group	3)
Big_1	PF02369.11	gi|298676220|ref|YP_003727969.1|	-	0.0057	16.5	7.4	0.0057	16.5	5.2	5.8	4	1	0	5	5	5	2	Bacterial	Ig-like	domain	(group	1)
CarboxypepD_reg	PF13620.1	gi|298676221|ref|YP_003727970.1|	-	0.0019	18.2	2.1	0.0041	17.1	0.3	2.5	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Pollen_Ole_e_I	PF01190.12	gi|298676221|ref|YP_003727970.1|	-	0.011	15.5	0.6	0.031	14.1	0.0	2.0	2	0	0	2	2	2	0	Pollen	proteins	Ole	e	I	like
Gram_pos_anchor	PF00746.16	gi|298676221|ref|YP_003727970.1|	-	0.012	15.3	0.6	0.012	15.3	0.4	1.8	2	0	0	2	2	2	0	Gram	positive	anchor
DUF4480	PF13715.1	gi|298676221|ref|YP_003727970.1|	-	0.039	13.9	0.4	0.039	13.9	0.3	3.5	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4480)
SEP	PF08059.8	gi|298676221|ref|YP_003727970.1|	-	0.54	10.6	3.6	2.3	8.6	0.8	2.7	2	1	0	2	2	2	0	SEP	domain
Cupredoxin_1	PF13473.1	gi|298676221|ref|YP_003727970.1|	-	1	9.3	4.4	2.7	7.9	2.2	2.3	2	1	0	2	2	2	0	Cupredoxin-like	domain
DUF290	PF01060.18	gi|298676221|ref|YP_003727970.1|	-	1.6	8.8	4.6	1.2	9.1	0.1	2.9	3	1	1	4	4	4	0	Transthyretin-like	family
Big_3_4	PF13754.1	gi|298676223|ref|YP_003727972.1|	-	3.3e-19	68.9	236.1	3e-05	24.2	3.7	20.8	20	2	2	22	22	22	13	Bacterial	Ig-like	domain	(group	3)
SWM_repeat	PF13753.1	gi|298676223|ref|YP_003727972.1|	-	4.7e-12	45.6	75.9	1.8e-10	40.3	29.9	11.3	2	1	8	10	10	10	7	Putative	flagellar	system-associated	repeat
DUF4625	PF15418.1	gi|298676223|ref|YP_003727972.1|	-	0.021	14.9	0.2	0.021	14.9	0.1	10.2	6	2	5	11	11	11	0	Domain	of	unknown	function	(DUF4625)
Big_3_3	PF13750.1	gi|298676223|ref|YP_003727972.1|	-	0.051	13.0	0.1	0.0042	16.5	3.4	15.2	14	5	6	20	20	20	0	Bacterial	Ig-like	domain	(group	3)
AAA_23	PF13476.1	gi|298676224|ref|YP_003727973.1|	-	1.8e-10	41.5	30.8	1.8e-10	41.5	21.3	4.6	1	1	2	3	3	1	1	AAA	domain
AAA_13	PF13166.1	gi|298676224|ref|YP_003727973.1|	-	2.4e-07	29.6	84.8	0.00033	19.2	27.6	2.3	1	1	1	2	2	2	2	AAA	domain
Spc7	PF08317.6	gi|298676224|ref|YP_003727973.1|	-	0.0024	16.6	15.7	0.0024	16.6	10.9	3.9	1	1	2	3	3	3	2	Spc7	kinetochore	protein
IncA	PF04156.9	gi|298676224|ref|YP_003727973.1|	-	0.0034	17.0	71.0	0.35	10.4	6.4	4.3	2	2	2	4	4	4	4	IncA	protein
Reo_sigmaC	PF04582.7	gi|298676224|ref|YP_003727973.1|	-	0.062	12.4	25.3	0.25	10.4	6.1	4.1	1	1	3	4	4	4	0	Reovirus	sigma	C	capsid	protein
DUF3584	PF12128.3	gi|298676224|ref|YP_003727973.1|	-	0.28	8.4	65.5	0.27	8.4	20.6	3.0	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3584)
HOOK	PF05622.7	gi|298676224|ref|YP_003727973.1|	-	0.46	8.2	63.7	0.88	7.2	16.7	2.1	2	0	0	2	2	2	0	HOOK	protein
TBPIP	PF07106.8	gi|298676224|ref|YP_003727973.1|	-	0.78	9.2	86.9	0.83	9.1	10.8	4.5	2	2	2	4	4	4	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Tropomyosin	PF00261.15	gi|298676224|ref|YP_003727973.1|	-	3	6.8	73.3	3.5	6.6	21.1	4.3	2	2	2	4	4	4	0	Tropomyosin
FliJ	PF02050.11	gi|298676224|ref|YP_003727973.1|	-	6.7	6.7	55.8	0.039	14.0	4.9	5.3	2	2	3	5	5	5	0	Flagellar	FliJ	protein
BLOC1_2	PF10046.4	gi|298676224|ref|YP_003727973.1|	-	8.5	6.5	71.9	4.3	7.5	7.5	6.3	3	2	3	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF445	PF04286.7	gi|298676225|ref|YP_003727974.1|	-	0.082	12.4	0.2	0.11	11.9	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
HTH_45	PF14947.1	gi|298676226|ref|YP_003727975.1|	-	7.4e-06	25.6	1.6	0.0013	18.4	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix
DUF2250	PF10007.4	gi|298676226|ref|YP_003727975.1|	-	0.0018	18.1	0.1	1.3	8.9	0.0	2.4	1	1	1	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
OrfB_IS605	PF01385.14	gi|298676228|ref|YP_003727977.1|	-	1.3e-44	152.3	5.8	1.3e-44	152.3	4.0	1.5	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|298676228|ref|YP_003727977.1|	-	3.5e-24	84.2	0.3	6.6e-24	83.3	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|298676228|ref|YP_003727977.1|	-	6.6e-20	70.1	1.8	1.5e-19	69.0	1.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.14	gi|298676228|ref|YP_003727977.1|	-	0.053	13.2	0.3	0.3	10.7	0.1	2.2	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
M_domain	PF12938.2	gi|298676228|ref|YP_003727977.1|	-	0.51	10.1	5.1	0.18	11.6	1.5	1.6	2	0	0	2	2	2	0	M	domain	of	GW182
Occludin_ELL	PF07303.8	gi|298676228|ref|YP_003727977.1|	-	0.8	10.4	8.0	0.41	11.4	2.2	2.4	2	0	0	2	2	2	0	Occludin	homology	domain
Phage_GP20	PF06810.6	gi|298676228|ref|YP_003727977.1|	-	6.5	6.1	13.8	0.83	9.0	3.4	2.9	3	1	0	3	3	3	0	Phage	minor	structural	protein	GP20
Rubredoxin	PF00301.15	gi|298676228|ref|YP_003727977.1|	-	6.9	6.6	9.9	49	3.9	5.9	2.8	2	1	0	2	2	2	0	Rubredoxin
Big_3_4	PF13754.1	gi|298676229|ref|YP_003727978.1|	-	1.6e-13	50.7	19.3	8.8e-09	35.5	7.1	10.3	11	1	0	11	11	11	5	Bacterial	Ig-like	domain	(group	3)
Big_3_2	PF12245.3	gi|298676229|ref|YP_003727978.1|	-	8.3e-08	31.6	10.2	0.00011	21.6	0.1	5.4	4	0	0	4	4	4	2	Bacterial	Ig-like	domain	(group	3)
DUF4625	PF15418.1	gi|298676229|ref|YP_003727978.1|	-	3.6e-05	23.8	23.3	0.19	11.8	0.4	6.5	4	1	1	6	6	6	3	Domain	of	unknown	function	(DUF4625)
SWM_repeat	PF13753.1	gi|298676229|ref|YP_003727978.1|	-	0.019	14.0	124.7	0.004	16.2	34.4	4.6	2	1	3	5	5	5	0	Putative	flagellar	system-associated	repeat
CarboxypepD_reg	PF13620.1	gi|298676230|ref|YP_003727979.1|	-	0.0004	20.3	3.9	0.00048	20.1	0.9	2.5	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Gram_pos_anchor	PF00746.16	gi|298676230|ref|YP_003727979.1|	-	0.004	16.9	0.9	0.004	16.9	0.6	1.8	2	0	0	2	2	2	1	Gram	positive	anchor
Pollen_Ole_e_I	PF01190.12	gi|298676230|ref|YP_003727979.1|	-	0.04	13.7	0.3	0.14	11.9	0.0	2.0	2	0	0	2	2	2	0	Pollen	proteins	Ole	e	I	like
DUF4480	PF13715.1	gi|298676230|ref|YP_003727979.1|	-	0.1	12.6	0.4	0.1	12.6	0.2	3.5	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4480)
Ribosomal_L19	PF01245.15	gi|298676230|ref|YP_003727979.1|	-	0.13	12.0	0.7	0.24	11.1	0.5	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L19
GspH	PF12019.3	gi|298676230|ref|YP_003727979.1|	-	0.18	11.9	0.9	1.1	9.4	0.6	2.3	1	1	0	1	1	1	0	Type	II	transport	protein	GspH
ABC2_membrane_3	PF12698.2	gi|298676230|ref|YP_003727979.1|	-	0.93	8.4	7.4	3.5	6.5	5.1	1.9	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
TrmB	PF01978.14	gi|298676231|ref|YP_003727980.1|	-	1.6e-06	27.6	0.0	2.5e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|298676231|ref|YP_003727980.1|	-	1.1e-05	24.9	0.1	2.1e-05	24.1	0.1	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|298676231|ref|YP_003727980.1|	-	2.3e-05	23.9	0.0	3.5e-05	23.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
DUF387	PF04079.11	gi|298676231|ref|YP_003727980.1|	-	0.00073	18.9	0.1	0.0011	18.3	0.1	1.2	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
HTH_24	PF13412.1	gi|298676231|ref|YP_003727980.1|	-	0.0041	16.4	0.1	0.01	15.2	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|298676231|ref|YP_003727980.1|	-	0.014	15.2	0.3	0.042	13.6	0.0	1.8	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF327	PF03885.8	gi|298676231|ref|YP_003727980.1|	-	0.019	14.7	0.2	0.022	14.6	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF327)
HTH_27	PF13463.1	gi|298676231|ref|YP_003727980.1|	-	0.03	14.6	0.1	0.053	13.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2015	PF09435.5	gi|298676231|ref|YP_003727980.1|	-	0.13	12.0	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	Fungal	protein	of	unknown	function	(DUF2015)
AAA_22	PF13401.1	gi|298676232|ref|YP_003727981.1|	-	9e-15	54.9	0.1	2.5e-14	53.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|298676232|ref|YP_003727981.1|	-	5.6e-07	29.7	0.2	1.1e-05	25.4	0.0	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|298676232|ref|YP_003727981.1|	-	7.7e-05	22.4	0.3	0.00064	19.4	0.2	2.5	1	1	0	1	1	1	1	Archaeal	ATPase
SNF2_N	PF00176.18	gi|298676232|ref|YP_003727981.1|	-	0.001	17.9	0.3	0.0015	17.3	0.2	1.4	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
NB-ARC	PF00931.17	gi|298676232|ref|YP_003727981.1|	-	0.0021	16.9	0.2	1.4	7.7	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
AAA	PF00004.24	gi|298676232|ref|YP_003727981.1|	-	0.0093	16.1	0.6	0.025	14.7	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)