# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NAD_kinase PF01513.16 gi|147918683|ref|YP_687594.1| - 8.3e-54 182.2 0.1 1e-53 182.0 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase Actin PF00022.14 gi|147918683|ref|YP_687594.1| - 0.069 11.5 0.0 0.077 11.4 0.0 1.2 1 0 0 1 1 1 0 Actin Rb_C PF08934.5 gi|147918683|ref|YP_687594.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Rb C-terminal domain DUF2268 PF10026.4 gi|147918684|ref|YP_687593.1| - 2.1e-58 196.9 0.0 3.3e-58 196.3 0.0 1.3 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) Peptidase_MA_2 PF13485.1 gi|147918684|ref|YP_687593.1| - 0.09 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2268 PF10026.4 gi|147918685|ref|YP_687592.1| - 2.2e-56 190.3 0.0 3.1e-56 189.8 0.0 1.2 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) DUF790 PF05626.6 gi|147918686|ref|YP_687591.1| - 2.7e-119 398.0 0.0 3.2e-119 397.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Tautomerase PF01361.16 gi|147918686|ref|YP_687591.1| - 0.021 14.4 0.0 8.4 6.0 0.0 2.5 2 0 0 2 2 2 0 Tautomerase enzyme ResIII PF04851.10 gi|147918687|ref|YP_687590.1| - 1.2e-21 77.4 0.0 1.3e-19 70.7 0.0 2.6 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|147918687|ref|YP_687590.1| - 3.7e-17 61.9 0.4 2e-16 59.6 0.0 2.3 2 1 1 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|147918687|ref|YP_687590.1| - 6.5e-11 42.0 0.0 1.6e-10 40.6 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|147918687|ref|YP_687590.1| - 2.1e-05 23.4 0.0 4.4e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|147918687|ref|YP_687590.1| - 0.032 14.3 0.0 0.63 10.1 0.0 2.8 2 1 0 2 2 2 0 AAA domain AhpC-TSA PF00578.16 gi|147918688|ref|YP_687589.1| - 1.3e-38 131.4 0.0 1.7e-38 131.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147918688|ref|YP_687589.1| - 7.2e-15 54.7 0.0 8.9e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|147918688|ref|YP_687589.1| - 1.8e-14 53.1 0.1 3.6e-14 52.1 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Methyltransf_31 PF13847.1 gi|147918689|ref|YP_687588.1| - 1.6e-09 37.5 0.0 1.8e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147918689|ref|YP_687588.1| - 1.2e-08 35.2 0.0 2.1e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147918689|ref|YP_687588.1| - 3.5e-08 34.0 0.1 5.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147918689|ref|YP_687588.1| - 2.8e-06 27.6 0.0 4.4e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147918689|ref|YP_687588.1| - 5e-06 26.5 0.0 6.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147918689|ref|YP_687588.1| - 1.8e-05 25.1 0.0 3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147918689|ref|YP_687588.1| - 0.00018 21.2 0.0 0.00022 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|147918689|ref|YP_687588.1| - 0.0032 16.4 0.0 0.004 16.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) MTS PF05175.9 gi|147918689|ref|YP_687588.1| - 0.013 14.8 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain MetW PF07021.7 gi|147918689|ref|YP_687588.1| - 0.052 12.9 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF192 PF02643.10 gi|147918690|ref|YP_687587.1| - 1.2e-39 134.2 0.0 1.6e-39 133.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DAO PF01266.19 gi|147918691|ref|YP_687586.1| - 6.2e-45 153.6 2.7 8.5e-45 153.1 1.8 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|147918691|ref|YP_687586.1| - 0.00041 20.3 1.2 0.0014 18.5 0.8 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|147918691|ref|YP_687586.1| - 0.002 18.0 0.9 0.0084 16.0 0.7 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|147918691|ref|YP_687586.1| - 0.0053 15.6 2.3 0.012 14.4 1.5 1.6 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|147918691|ref|YP_687586.1| - 0.01 15.5 0.1 0.019 14.6 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|147918691|ref|YP_687586.1| - 0.041 14.2 0.5 0.26 11.7 0.2 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|147918691|ref|YP_687586.1| - 0.083 11.9 1.7 0.13 11.3 1.2 1.2 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.9 gi|147918691|ref|YP_687586.1| - 0.1 11.0 0.2 1.1 7.5 0.4 2.2 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.17 gi|147918691|ref|YP_687586.1| - 0.29 9.9 2.6 0.29 9.9 0.6 1.7 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|147918691|ref|YP_687586.1| - 0.38 10.5 1.3 2.3 7.9 0.3 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding Peptidase_M3 PF01432.15 gi|147918692|ref|YP_687585.1| - 0.013 14.5 0.0 0.42 9.5 0.0 2.4 1 1 1 2 2 2 0 Peptidase family M3 Peptidase_M29 PF02073.10 gi|147918693|ref|YP_687584.1| - 2e-22 79.5 0.0 3.5e-22 78.7 0.0 1.3 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF1887 PF09002.6 gi|147918693|ref|YP_687584.1| - 0.062 11.6 0.0 0.33 9.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1887) CarboxypepD_reg PF13620.1 gi|147918694|ref|YP_687583.1| - 0.00013 21.9 3.0 0.00016 21.6 0.7 2.3 2 2 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4493 PF14900.1 gi|147918694|ref|YP_687583.1| - 0.0026 17.4 0.7 1.2 8.6 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4493) DC_STAMP PF07782.8 gi|147918694|ref|YP_687583.1| - 0.051 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 DC-STAMP-like protein DUF4366 PF14283.1 gi|147918694|ref|YP_687583.1| - 0.09 12.1 0.1 0.33 10.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) TMEMspv1-c74-12 PF11044.3 gi|147918694|ref|YP_687583.1| - 0.11 12.0 0.2 0.11 12.0 0.1 2.0 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Rep_fac_C PF08542.6 gi|147918695|ref|YP_687582.1| - 2.1e-22 78.8 0.1 6.2e-22 77.3 0.0 1.8 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.24 gi|147918695|ref|YP_687582.1| - 6.7e-19 68.4 0.0 1.6e-18 67.1 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|147918695|ref|YP_687582.1| - 6.8e-15 55.0 0.0 4e-13 49.3 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|147918695|ref|YP_687582.1| - 1.7e-10 40.3 0.0 2.5e-08 33.2 0.0 3.0 1 1 1 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|147918695|ref|YP_687582.1| - 1.9e-08 33.4 0.0 6.2e-05 21.8 0.0 2.2 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|147918695|ref|YP_687582.1| - 2.1e-07 30.8 0.0 3.6e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|147918695|ref|YP_687582.1| - 2.4e-07 30.9 0.1 0.0037 17.4 0.0 2.9 2 1 1 3 3 3 2 AAA domain DNA_pol3_delta PF06144.8 gi|147918695|ref|YP_687582.1| - 3e-07 30.1 0.0 4.9e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|147918695|ref|YP_687582.1| - 2.7e-06 27.5 0.1 0.00049 20.1 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain TIP49 PF06068.8 gi|147918695|ref|YP_687582.1| - 4.9e-06 25.5 0.0 0.00037 19.3 0.0 2.8 1 1 1 2 2 2 1 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|147918695|ref|YP_687582.1| - 2e-05 24.6 0.0 3.7e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|147918695|ref|YP_687582.1| - 2.2e-05 23.7 0.0 0.0047 16.1 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|147918695|ref|YP_687582.1| - 6e-05 22.6 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|147918695|ref|YP_687582.1| - 0.00034 20.0 0.0 0.0012 18.3 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|147918695|ref|YP_687582.1| - 0.0013 19.0 0.0 0.0034 17.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147918695|ref|YP_687582.1| - 0.0017 19.1 0.0 0.0054 17.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|147918695|ref|YP_687582.1| - 0.0017 18.0 0.0 0.0042 16.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|147918695|ref|YP_687582.1| - 0.0018 17.9 0.0 0.0095 15.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|147918695|ref|YP_687582.1| - 0.0028 17.1 0.0 1.3 8.5 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|147918695|ref|YP_687582.1| - 0.0078 16.1 0.0 0.029 14.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_10 PF12846.2 gi|147918695|ref|YP_687582.1| - 0.0081 15.6 0.4 5.4 6.3 0.0 2.7 3 0 0 3 3 3 0 AAA-like domain ResIII PF04851.10 gi|147918695|ref|YP_687582.1| - 0.0092 15.8 0.0 0.021 14.6 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|147918695|ref|YP_687582.1| - 0.018 15.2 0.0 0.051 13.7 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_25 PF13481.1 gi|147918695|ref|YP_687582.1| - 0.023 14.1 0.1 0.058 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|147918695|ref|YP_687582.1| - 0.03 13.9 0.0 0.053 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF3400 PF11880.3 gi|147918695|ref|YP_687582.1| - 0.041 13.0 0.0 0.099 11.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) Viral_helicase1 PF01443.13 gi|147918695|ref|YP_687582.1| - 0.05 13.1 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArgK PF03308.11 gi|147918695|ref|YP_687582.1| - 0.061 12.0 0.0 2.8 6.6 0.0 2.2 1 1 1 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|147918695|ref|YP_687582.1| - 0.074 12.9 0.0 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|147918695|ref|YP_687582.1| - 0.085 11.8 0.0 0.45 9.4 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|147918695|ref|YP_687582.1| - 0.11 11.6 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 SNF2_N PF00176.18 gi|147918695|ref|YP_687582.1| - 0.12 11.0 0.0 0.66 8.7 0.0 1.9 1 1 0 2 2 2 0 SNF2 family N-terminal domain PBP PF01161.15 gi|147918696|ref|YP_687581.1| - 1.4e-41 141.7 0.0 1.6e-41 141.5 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF2240 PF09999.4 gi|147918697|ref|YP_687580.1| - 9e-44 148.4 0.0 1e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) Transglut_core PF01841.14 gi|147918698|ref|YP_687579.1| - 6.4e-25 87.5 0.1 1e-24 86.8 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4480 PF13715.1 gi|147918698|ref|YP_687579.1| - 3e-07 30.4 0.2 3e-07 30.4 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|147918698|ref|YP_687579.1| - 0.0018 18.0 0.3 0.0054 16.5 0.0 1.9 2 0 0 2 2 2 1 PEGA domain Transglut_core3 PF13471.1 gi|147918698|ref|YP_687579.1| - 0.016 15.0 0.4 0.061 13.1 0.3 1.9 1 1 0 1 1 1 0 Transglutaminase-like superfamily FixQ PF05545.6 gi|147918701|ref|YP_687576.1| - 0.0064 16.1 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Cbb3-type cytochrome oxidase component FixQ IncA PF04156.9 gi|147918701|ref|YP_687576.1| - 0.025 14.2 2.9 0.085 12.4 2.0 1.8 1 1 0 1 1 1 0 IncA protein DUF4398 PF14346.1 gi|147918701|ref|YP_687576.1| - 0.043 13.8 4.4 0.33 11.0 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) OppC_N PF12911.2 gi|147918701|ref|YP_687576.1| - 0.12 11.7 0.3 0.21 10.9 0.2 1.4 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C HemY_N PF07219.8 gi|147918701|ref|YP_687576.1| - 2.6 7.6 9.7 6.5 6.3 0.2 2.7 2 1 1 3 3 3 0 HemY protein N-terminus Tubulin PF00091.20 gi|147918704|ref|YP_687573.1| - 6.3e-35 120.9 0.2 2.1e-34 119.2 0.1 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|147918704|ref|YP_687573.1| - 1.8e-34 117.6 2.9 1.8e-34 117.6 2.0 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|147918704|ref|YP_687573.1| - 0.018 14.8 0.3 0.047 13.5 0.2 1.7 1 0 0 1 1 1 0 ThiF family SRP54_N PF02881.14 gi|147918704|ref|YP_687573.1| - 0.11 12.5 0.2 1.1 9.3 0.0 2.7 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain VWA_2 PF13519.1 gi|147918704|ref|YP_687573.1| - 0.13 12.3 3.4 1 9.4 0.1 2.9 2 1 1 3 3 3 0 von Willebrand factor type A domain Tubulin_2 PF13809.1 gi|147918704|ref|YP_687573.1| - 0.15 11.0 1.4 0.74 8.6 0.1 2.1 2 0 0 2 2 2 0 Tubulin like SecE PF00584.15 gi|147918705|ref|YP_687572.1| - 0.0082 15.6 0.1 0.0095 15.4 0.1 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.8 gi|147918706|ref|YP_687571.1| - 8.7e-24 83.0 0.5 1.5e-23 82.3 0.3 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|147918706|ref|YP_687571.1| - 5.3e-08 32.2 0.7 9.6e-07 28.2 0.0 2.5 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|147918706|ref|YP_687571.1| - 0.00024 21.2 0.3 0.00071 19.7 0.0 1.9 2 1 0 2 2 2 1 Transcription termination factor nusG Ribosomal_L11_N PF03946.9 gi|147918707|ref|YP_687570.1| - 8e-27 92.4 1.5 8e-27 92.4 1.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|147918707|ref|YP_687570.1| - 7.6e-20 70.8 0.2 7.6e-20 70.8 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L11, RNA binding domain DUF2067 PF09840.4 gi|147918707|ref|YP_687570.1| - 0.14 11.6 0.4 0.67 9.4 0.3 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) Ribosomal_L1 PF00687.16 gi|147918708|ref|YP_687569.1| - 1.9e-49 167.9 1.1 2.3e-49 167.6 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|147918709|ref|YP_687568.1| - 2.9e-21 75.2 0.0 5.8e-21 74.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|147918710|ref|YP_687567.1| - 9.6e-19 67.5 21.9 1.2e-18 67.2 15.2 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein DEC-1_N PF04625.8 gi|147918710|ref|YP_687567.1| - 0.29 9.7 5.6 0.31 9.6 3.9 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Peptidase_M55 PF04951.8 gi|147918710|ref|YP_687567.1| - 1.2 8.3 4.3 1.4 8.0 3.0 1.0 1 0 0 1 1 1 0 D-aminopeptidase Shadoo PF14999.1 gi|147918710|ref|YP_687567.1| - 4 7.2 10.3 5.8 6.7 7.2 1.3 1 1 0 1 1 1 0 Shadow of prion protein, neuroprotective DUF3138 PF11336.3 gi|147918710|ref|YP_687567.1| - 5.5 5.0 8.1 5.8 4.9 5.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) KaiC PF06745.8 gi|147918711|ref|YP_687566.1| - 2.6e-40 137.9 0.5 6.5e-40 136.6 0.3 1.6 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|147918711|ref|YP_687566.1| - 1e-10 41.3 0.0 2.1e-10 40.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|147918711|ref|YP_687566.1| - 7.3e-07 27.8 0.6 1.5e-06 26.8 0.4 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|147918711|ref|YP_687566.1| - 0.00091 18.3 0.8 0.0012 17.9 0.1 1.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_22 PF13401.1 gi|147918711|ref|YP_687566.1| - 0.0012 18.9 0.3 0.0061 16.7 0.2 2.0 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|147918711|ref|YP_687566.1| - 0.0014 18.1 0.1 0.0025 17.3 0.1 1.3 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain IstB_IS21 PF01695.12 gi|147918711|ref|YP_687566.1| - 0.0019 17.6 0.0 0.0038 16.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_31 PF13614.1 gi|147918711|ref|YP_687566.1| - 0.0026 17.7 0.0 0.0051 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|147918711|ref|YP_687566.1| - 0.0047 15.8 0.4 0.0088 14.9 0.1 1.5 2 0 0 2 2 2 1 Rad51 AAA_19 PF13245.1 gi|147918711|ref|YP_687566.1| - 0.0051 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|147918711|ref|YP_687566.1| - 0.015 14.2 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CobU PF02283.11 gi|147918711|ref|YP_687566.1| - 0.022 14.1 0.0 0.055 12.8 0.0 1.6 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.1 gi|147918711|ref|YP_687566.1| - 0.022 14.6 0.1 0.061 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|147918711|ref|YP_687566.1| - 0.022 14.0 0.0 0.057 12.6 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein DEAD PF00270.24 gi|147918711|ref|YP_687566.1| - 0.022 14.2 0.0 0.031 13.7 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase Arch_ATPase PF01637.13 gi|147918711|ref|YP_687566.1| - 0.027 14.1 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|147918711|ref|YP_687566.1| - 0.046 13.6 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DnaB_C PF03796.10 gi|147918711|ref|YP_687566.1| - 0.097 11.5 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Zot PF05707.7 gi|147918711|ref|YP_687566.1| - 0.15 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AP_endonuc_2 PF01261.19 gi|147918712|ref|YP_687565.1| - 5.3e-28 97.7 0.2 7e-28 97.3 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RmlD_sub_bind PF04321.12 gi|147918713|ref|YP_687564.1| - 3.9e-44 150.6 0.0 4.6e-44 150.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|147918713|ref|YP_687564.1| - 1.1e-13 51.2 0.0 1.5e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|147918713|ref|YP_687564.1| - 0.0028 16.6 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein ATP-grasp PF02222.17 gi|147918713|ref|YP_687564.1| - 0.0086 15.4 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Peptidase_U57 PF05582.7 gi|147918713|ref|YP_687564.1| - 0.088 11.7 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 YabG peptidase U57 Polysacc_synt_2 PF02719.10 gi|147918713|ref|YP_687564.1| - 0.095 11.5 0.1 0.89 8.3 0.1 2.1 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein OapA PF04225.7 gi|147918713|ref|YP_687564.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain CsbD PF05532.7 gi|147918714|ref|YP_687563.1| - 1.5e-10 40.5 15.5 1.9e-10 40.2 10.7 1.1 1 0 0 1 1 1 1 CsbD-like Peptidase_S8 PF00082.17 gi|147918715|ref|YP_687562.1| - 2.7e-74 249.8 12.9 2.7e-74 249.8 8.9 2.0 2 1 0 2 2 2 1 Subtilase family Inhibitor_I9 PF05922.11 gi|147918715|ref|YP_687562.1| - 3.7e-11 43.4 0.3 7.9e-11 42.3 0.2 1.6 1 0 0 1 1 1 1 Peptidase inhibitor I9 PPC PF04151.10 gi|147918715|ref|YP_687562.1| - 1.7e-09 38.4 12.7 5.8e-07 30.3 1.6 4.0 2 1 1 3 3 3 2 Bacterial pre-peptidase C-terminal domain NPCBM_assoc PF10633.4 gi|147918715|ref|YP_687562.1| - 1.5e-06 28.1 2.9 4.6e-06 26.5 2.0 2.0 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase FlgD_ig PF13860.1 gi|147918715|ref|YP_687562.1| - 5.9e-05 22.7 1.8 0.2 11.4 0.0 3.7 3 0 0 3 3 3 2 FlgD Ig-like domain PapD-like PF14874.1 gi|147918715|ref|YP_687562.1| - 0.00037 20.3 0.0 0.00088 19.1 0.0 1.5 1 0 0 1 1 1 1 Flagellar-associated PapD-like Y_Y_Y PF07495.8 gi|147918715|ref|YP_687562.1| - 0.001 18.7 1.5 0.061 13.0 0.0 3.2 3 0 0 3 3 3 1 Y_Y_Y domain Trypan_PARP PF05887.6 gi|147918715|ref|YP_687562.1| - 0.38 10.5 25.6 0.06 13.1 8.0 2.8 3 0 0 3 3 3 0 Procyclic acidic repetitive protein (PARP) FtsZ_C PF12327.3 gi|147918716|ref|YP_687561.1| - 6.5e-35 119.0 1.5 1.7e-34 117.7 0.1 2.4 2 1 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|147918716|ref|YP_687561.1| - 2.7e-32 112.3 1.3 1.2e-31 110.2 0.9 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|147918716|ref|YP_687561.1| - 0.098 12.4 0.9 0.34 10.7 0.6 1.9 1 1 0 1 1 1 0 ThiF family HTH_45 PF14947.1 gi|147918717|ref|YP_687560.1| - 0.00085 19.0 0.1 0.0013 18.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.11 gi|147918717|ref|YP_687560.1| - 0.0027 17.7 0.0 0.0042 17.1 0.0 1.5 1 1 0 1 1 1 1 HemN C-terminal domain AMP-binding_C_2 PF14535.1 gi|147918719|ref|YP_687558.1| - 7.1e-30 102.9 0.2 1.5e-29 101.9 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|147918719|ref|YP_687558.1| - 2.7e-16 59.0 0.0 1.2e-15 56.9 0.0 1.8 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.1 gi|147918720|ref|YP_687557.1| - 2.1e-32 110.9 0.2 5.7e-32 109.6 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|147918720|ref|YP_687557.1| - 1.8e-18 66.1 1.0 5.3e-18 64.6 0.7 1.7 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|147918720|ref|YP_687557.1| - 6.6e-07 28.3 0.0 0.00025 19.8 0.0 2.2 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.8 gi|147918720|ref|YP_687557.1| - 0.045 12.2 0.0 1.1 7.6 0.0 2.1 2 0 0 2 2 2 0 GH3 auxin-responsive promoter ACT PF01842.20 gi|147918721|ref|YP_687556.1| - 2.7e-13 49.0 0.2 4.8e-06 25.9 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.1 gi|147918721|ref|YP_687556.1| - 7.1e-07 29.4 0.1 0.0016 18.7 0.0 2.2 2 0 0 2 2 2 2 ACT domain ACT_7 PF13840.1 gi|147918721|ref|YP_687556.1| - 0.0015 18.0 0.3 0.021 14.3 0.0 2.4 2 1 0 2 2 2 1 ACT domain CxxCxxCC PF03692.10 gi|147918722|ref|YP_687555.1| - 4.2e-08 33.5 1.2 1e-07 32.3 0.8 1.6 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain MAGSP PF03082.9 gi|147918724|ref|YP_687553.1| - 0.091 12.1 0.1 0.1 11.9 0.1 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein AMP-binding_C_2 PF14535.1 gi|147918725|ref|YP_687552.1| - 4.2e-20 71.6 0.0 7.2e-20 70.8 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|147918725|ref|YP_687552.1| - 2.4e-14 52.5 0.2 3.7e-14 51.9 0.0 1.3 2 0 0 2 2 2 1 AMP-binding enzyme LuxE PF04443.7 gi|147918725|ref|YP_687552.1| - 0.018 13.7 0.0 0.055 12.1 0.0 1.6 2 0 0 2 2 2 0 Acyl-protein synthetase, LuxE DUF3283 PF11686.3 gi|147918726|ref|YP_687551.1| - 0.073 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3283) MutS_V PF00488.16 gi|147918727|ref|YP_687550.1| - 1.2e-10 41.2 0.0 2.2e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.1 gi|147918727|ref|YP_687550.1| - 1.2e-05 25.3 0.0 5e-05 23.3 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|147918727|ref|YP_687550.1| - 2e-05 24.3 0.1 8.8e-05 22.3 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|147918727|ref|YP_687550.1| - 0.00084 19.2 0.0 0.52 10.2 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH PF00633.18 gi|147918727|ref|YP_687550.1| - 0.0017 17.9 0.3 3 7.7 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif Rad9 PF04139.8 gi|147918727|ref|YP_687550.1| - 0.0075 15.4 0.6 0.015 14.4 0.4 1.4 1 0 0 1 1 1 1 Rad9 5_3_exonuc PF01367.15 gi|147918727|ref|YP_687550.1| - 0.02 15.1 5.6 0.054 13.7 0.0 4.0 3 2 2 5 5 5 0 5'-3' exonuclease, C-terminal SAM fold AAA_29 PF13555.1 gi|147918727|ref|YP_687550.1| - 0.044 13.3 0.1 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain HHH_8 PF14716.1 gi|147918727|ref|YP_687550.1| - 0.058 13.5 0.2 1.1 9.4 0.0 3.0 3 0 0 3 3 3 0 Helix-hairpin-helix domain T2SE PF00437.15 gi|147918727|ref|YP_687550.1| - 0.078 11.8 0.2 0.57 9.0 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF4163 PF13739.1 gi|147918727|ref|YP_687550.1| - 9.3 7.0 7.1 5.3 7.8 1.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4163) AIM24 PF01987.12 gi|147918728|ref|YP_687549.1| - 7.4e-56 188.9 0.3 9.3e-56 188.6 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DUF2808 PF10989.3 gi|147918728|ref|YP_687549.1| - 0.059 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2808) DEAD PF00270.24 gi|147918729|ref|YP_687548.1| - 1.4e-28 99.4 0.0 2.5e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|147918729|ref|YP_687548.1| - 4.5e-19 68.8 0.2 9.5e-19 67.7 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|147918729|ref|YP_687548.1| - 1.5e-11 43.9 0.1 7.5e-11 41.7 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147918729|ref|YP_687548.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit RNase_H_2 PF13482.1 gi|147918730|ref|YP_687547.1| - 1.1e-30 106.5 0.0 1.6e-30 106.0 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|147918730|ref|YP_687547.1| - 0.00028 20.5 0.0 0.00053 19.5 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_exo1 PF03104.14 gi|147918730|ref|YP_687547.1| - 0.0047 15.8 0.0 0.0071 15.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_lambd_f PF10391.4 gi|147918730|ref|YP_687547.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_5 PF14520.1 gi|147918730|ref|YP_687547.1| - 0.076 13.1 0.1 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain Cpn60_TCP1 PF00118.19 gi|147918731|ref|YP_687546.1| - 1.2e-166 555.1 17.6 1.3e-166 554.9 12.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3924 PF13062.1 gi|147918731|ref|YP_687546.1| - 0.069 13.0 0.8 0.67 9.8 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3924) PGK PF00162.14 gi|147918735|ref|YP_687542.1| - 9.2e-155 514.9 0.0 1e-154 514.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF498 PF04430.9 gi|147918735|ref|YP_687542.1| - 0.086 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) MS_channel PF00924.13 gi|147918736|ref|YP_687541.1| - 1.4e-47 161.6 1.0 1.4e-47 161.6 0.7 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Multi_Drug_Res PF00893.14 gi|147918736|ref|YP_687541.1| - 2.6 8.5 9.9 0.59 10.6 0.8 2.8 2 1 0 2 2 2 0 Small Multidrug Resistance protein TrbC PF04956.8 gi|147918736|ref|YP_687541.1| - 9.8 6.2 12.5 7.1 6.7 1.3 2.7 1 1 1 2 2 2 0 TrbC/VIRB2 family UDG PF03167.14 gi|147918737|ref|YP_687540.1| - 1.9e-40 137.8 0.0 2.3e-40 137.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2070 PF09843.4 gi|147918738|ref|YP_687539.1| - 1.7e-52 177.5 0.4 3.1e-52 176.6 0.3 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Yip1 PF04893.12 gi|147918738|ref|YP_687539.1| - 0.00065 19.2 19.7 0.00065 19.2 13.6 2.4 2 1 0 2 2 2 1 Yip1 domain DUF555 PF04475.7 gi|147918739|ref|YP_687538.1| - 3.8e-50 168.1 0.1 4.4e-50 167.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|147918739|ref|YP_687538.1| - 0.00092 18.6 0.6 0.0014 18.0 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Phage_hub_GP28 PF11110.3 gi|147918739|ref|YP_687538.1| - 0.0016 18.1 0.0 0.0026 17.4 0.0 1.3 1 0 0 1 1 1 1 Baseplate hub distal subunit zf-ribbon_3 PF13248.1 gi|147918739|ref|YP_687538.1| - 0.0027 16.8 1.2 0.0046 16.1 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain BON PF04972.12 gi|147918739|ref|YP_687538.1| - 0.014 15.1 1.1 4 7.2 0.0 2.3 2 0 0 2 2 2 0 BON domain DUF3090 PF11290.3 gi|147918739|ref|YP_687538.1| - 0.026 13.9 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) Dodecin PF07311.7 gi|147918739|ref|YP_687538.1| - 0.039 13.9 1.4 0.13 12.2 0.3 2.1 2 1 0 2 2 2 0 Dodecin DUF357 PF04010.8 gi|147918740|ref|YP_687537.1| - 9.8e-30 102.0 0.0 1.1e-29 101.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TPR_12 PF13424.1 gi|147918740|ref|YP_687537.1| - 0.035 14.0 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF87 PF01935.12 gi|147918741|ref|YP_687536.1| - 2e-37 129.2 0.0 3.5e-37 128.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|147918741|ref|YP_687536.1| - 1.4e-22 80.5 0.0 1.4e-21 77.2 0.0 2.0 1 1 0 1 1 1 1 AAA-like domain HAS-barrel PF09378.5 gi|147918741|ref|YP_687536.1| - 1.8e-06 27.7 0.0 4.6e-06 26.4 0.0 1.7 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.7 gi|147918741|ref|YP_687536.1| - 4.3e-06 25.3 0.0 0.025 12.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|147918741|ref|YP_687536.1| - 8.7e-06 24.5 0.0 0.0013 17.4 0.0 2.3 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.7 gi|147918741|ref|YP_687536.1| - 0.00028 20.4 0.0 0.0016 17.9 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|147918741|ref|YP_687536.1| - 0.00067 19.1 0.1 0.049 13.1 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.24 gi|147918741|ref|YP_687536.1| - 0.0035 17.5 0.0 0.062 13.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) T4SS-DNA_transf PF02534.9 gi|147918741|ref|YP_687536.1| - 0.039 12.5 0.0 0.071 11.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer ResIII PF04851.10 gi|147918741|ref|YP_687536.1| - 0.16 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF4249 PF14054.1 gi|147918742|ref|YP_687535.1| - 0.011 15.1 0.1 0.014 14.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) PTP_N PF12453.3 gi|147918742|ref|YP_687535.1| - 0.92 9.1 0.0 0.92 9.1 0.0 2.7 2 0 0 2 2 2 0 Protein tyrosine phosphatase N terminal TP_methylase PF00590.15 gi|147918743|ref|YP_687534.1| - 4.4e-18 65.7 0.0 5.1e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases MarR_2 PF12802.2 gi|147918744|ref|YP_687533.1| - 0.00036 20.1 0.0 0.00073 19.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|147918744|ref|YP_687533.1| - 0.0015 17.8 0.1 0.0031 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4397 PF14344.1 gi|147918744|ref|YP_687533.1| - 0.0018 18.5 0.1 0.0032 17.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4397) TrmB PF01978.14 gi|147918744|ref|YP_687533.1| - 0.034 13.8 0.1 0.066 12.9 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Shisa PF13908.1 gi|147918744|ref|YP_687533.1| - 0.05 13.7 1.3 0.092 12.9 0.9 1.4 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Met_10 PF02475.11 gi|147918746|ref|YP_687531.1| - 1.2e-66 224.1 0.7 1.7e-66 223.6 0.5 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|147918746|ref|YP_687531.1| - 1.1e-08 34.6 0.0 1.8e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|147918746|ref|YP_687531.1| - 2.2e-08 34.1 0.0 5.3e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147918746|ref|YP_687531.1| - 2.4e-08 33.7 0.0 4e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147918746|ref|YP_687531.1| - 5.8e-08 33.3 0.0 3e-07 31.0 0.0 2.1 3 0 0 3 3 3 1 Methyltransferase domain PrmA PF06325.8 gi|147918746|ref|YP_687531.1| - 2.8e-07 29.9 0.1 4.2e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|147918746|ref|YP_687531.1| - 1.5e-05 24.6 0.0 2.3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|147918746|ref|YP_687531.1| - 5.8e-05 23.3 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|147918746|ref|YP_687531.1| - 0.00014 21.2 0.0 0.0003 20.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|147918746|ref|YP_687531.1| - 0.00058 20.2 0.0 0.0019 18.6 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.11 gi|147918746|ref|YP_687531.1| - 0.00069 18.6 0.0 0.0012 17.8 0.0 1.3 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase TRM PF02005.11 gi|147918746|ref|YP_687531.1| - 0.0011 17.9 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase tRNA_U5-meth_tr PF05958.6 gi|147918746|ref|YP_687531.1| - 0.002 16.9 0.0 0.0029 16.3 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.15 gi|147918746|ref|YP_687531.1| - 0.0074 15.3 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DNA_methylase PF00145.12 gi|147918746|ref|YP_687531.1| - 0.015 14.4 0.0 0.026 13.6 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase ADH_zinc_N PF00107.21 gi|147918746|ref|YP_687531.1| - 0.06 12.8 0.0 0.14 11.7 0.0 1.7 1 1 0 1 1 1 0 Zinc-binding dehydrogenase FmrO PF07091.6 gi|147918746|ref|YP_687531.1| - 0.1 11.5 0.1 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) GidB PF02527.10 gi|147918746|ref|YP_687531.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Lactamase_B_3 PF13483.1 gi|147918746|ref|YP_687531.1| - 0.13 12.0 0.0 0.34 10.5 0.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain MIP PF00230.15 gi|147918747|ref|YP_687530.1| - 3.5e-47 160.7 18.3 4e-47 160.5 12.7 1.0 1 0 0 1 1 1 1 Major intrinsic protein DUF2193 PF09959.4 gi|147918748|ref|YP_687529.1| - 2.1e-281 933.3 2.8 2.4e-281 933.2 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2193) Methyltransf_2 PF00891.13 gi|147918748|ref|YP_687529.1| - 0.0068 15.6 0.0 0.014 14.6 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase MTH865 PF07747.6 gi|147918748|ref|YP_687529.1| - 0.024 14.2 0.0 0.075 12.6 0.0 1.8 1 0 0 1 1 1 0 MTH865-like family DNA_alkylation PF08713.6 gi|147918749|ref|YP_687528.1| - 2.7e-11 43.3 2.0 3.5e-11 43.0 1.4 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme Oxidored_FMN PF00724.15 gi|147918750|ref|YP_687527.1| - 6.8e-86 288.3 0.0 7.9e-86 288.1 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family ICL PF00463.16 gi|147918750|ref|YP_687527.1| - 0.026 12.7 0.0 0.038 12.2 0.0 1.1 1 0 0 1 1 1 0 Isocitrate lyase family DUF2284 PF10050.4 gi|147918751|ref|YP_687525.1| - 7.9e-49 165.4 0.3 1.5e-48 164.5 0.2 1.4 1 1 0 1 1 1 1 Predicted metal-binding protein (DUF2284) MFS_1 PF07690.11 gi|147918752|ref|YP_687524.1| - 3e-43 147.9 41.5 3e-43 147.9 28.8 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147918752|ref|YP_687524.1| - 2.4e-12 46.1 12.5 2.4e-12 46.1 8.7 2.4 3 0 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|147918752|ref|YP_687524.1| - 2.9e-08 32.5 37.0 1.7e-07 30.0 9.8 3.0 1 1 1 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|147918752|ref|YP_687524.1| - 8.6e-06 24.1 20.0 5.9e-05 21.3 13.8 1.9 1 1 0 1 1 1 1 Transmembrane secretion effector PAS_8 PF13188.1 gi|147918753|ref|YP_687523.1| - 2.1e-08 33.7 0.0 3.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|147918753|ref|YP_687523.1| - 1.7e-05 25.1 0.0 2.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147918753|ref|YP_687523.1| - 4.4e-05 23.2 0.0 6.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|147918753|ref|YP_687523.1| - 0.0052 16.8 0.0 0.0091 16.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|147918753|ref|YP_687523.1| - 0.044 13.8 0.0 0.081 13.0 0.0 1.6 1 1 0 1 1 1 0 PAS fold Flavin_Reduct PF01613.13 gi|147918754|ref|YP_686242.1| - 1.6e-34 118.9 0.0 2e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF488 PF04343.8 gi|147918755|ref|YP_687521.1| - 3.6e-30 104.8 0.0 4.1e-30 104.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Pyridox_oxidase PF01243.15 gi|147918756|ref|YP_687520.1| - 4.5e-17 61.8 0.0 7e-17 61.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|147918756|ref|YP_687520.1| - 0.00036 20.3 0.0 0.00048 19.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2101 PF09874.4 gi|147918757|ref|YP_687519.1| - 0.47 9.9 6.0 0.52 9.7 4.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) DUF2362 PF10154.4 gi|147918757|ref|YP_687519.1| - 1.5 7.3 4.6 1.6 7.2 3.2 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2362) HemY_N PF07219.8 gi|147918757|ref|YP_687519.1| - 4.4 6.9 6.4 5 6.7 4.5 1.3 1 1 0 1 1 1 0 HemY protein N-terminus DUF2566 PF10753.4 gi|147918757|ref|YP_687519.1| - 9.3 6.2 10.9 13 5.8 1.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2566) NAD_binding_2 PF03446.10 gi|147918758|ref|YP_687518.1| - 2e-35 122.0 0.1 3.4e-35 121.3 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|147918758|ref|YP_687518.1| - 2.8e-27 95.1 0.4 4.8e-27 94.4 0.3 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|147918758|ref|YP_687518.1| - 1.5e-07 31.7 0.2 2.8e-07 30.8 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|147918758|ref|YP_687518.1| - 6.6e-06 25.3 0.1 1.1e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|147918758|ref|YP_687518.1| - 8.8e-06 25.8 0.0 1.9e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short PF00106.20 gi|147918758|ref|YP_687518.1| - 0.00028 20.8 0.6 0.00053 19.9 0.4 1.5 1 1 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|147918758|ref|YP_687518.1| - 0.0054 16.7 0.2 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 NADH(P)-binding PFK PF00365.15 gi|147918759|ref|YP_687517.1| - 9.8e-93 310.1 9.3 1.1e-92 309.9 6.5 1.0 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.16 gi|147918759|ref|YP_687517.1| - 1.2e-05 24.2 1.4 0.00012 21.0 0.0 2.3 2 0 0 2 2 2 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|147918759|ref|YP_687517.1| - 0.044 13.2 0.2 0.12 11.7 0.1 1.8 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain His_Phos_1 PF00300.17 gi|147918760|ref|YP_687516.1| - 1.4e-10 41.5 0.0 2.9e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) tRNA_SAD PF07973.9 gi|147918761|ref|YP_687515.1| - 5.2e-10 39.0 0.4 1.1e-09 38.0 0.3 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|147918761|ref|YP_687515.1| - 4.2e-08 31.9 0.0 2.1e-07 29.6 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|147918761|ref|YP_687515.1| - 4.6e-07 29.4 0.3 2.1e-06 27.3 0.0 2.3 2 0 0 2 2 2 1 DHHA1 domain LigD_N PF13298.1 gi|147918762|ref|YP_687514.1| - 6.1e-44 148.4 0.0 8.3e-44 147.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase Ligase (LigD) UPF0126 PF03458.8 gi|147918763|ref|YP_687513.1| - 6.8e-45 150.5 29.4 2e-22 78.5 8.1 2.2 2 0 0 2 2 2 2 UPF0126 domain PolyA_pol PF01743.15 gi|147918763|ref|YP_687513.1| - 0.021 15.0 0.1 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 Poly A polymerase head domain Ldl_recept_b PF00058.12 gi|147918763|ref|YP_687513.1| - 0.085 13.1 0.2 0.19 12.1 0.2 1.5 1 0 0 1 1 1 0 Low-density lipoprotein receptor repeat class B DUF1189 PF06691.6 gi|147918763|ref|YP_687513.1| - 3.4 6.9 5.6 5.8 6.1 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1189) SAP PF02037.22 gi|147918765|ref|YP_687511.1| - 0.0014 18.0 0.1 0.0028 17.0 0.0 1.5 1 0 0 1 1 1 1 SAP domain DUF1707 PF08044.6 gi|147918765|ref|YP_687511.1| - 6.9 6.5 7.2 4 7.2 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1707) CarboxypepD_reg PF13620.1 gi|147918766|ref|YP_687510.1| - 1.5e-09 37.7 3.0 7.1e-09 35.6 0.7 2.5 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain MG1 PF11974.3 gi|147918766|ref|YP_687510.1| - 0.067 13.7 0.0 0.2 12.2 0.0 1.9 1 1 1 2 2 2 0 Alpha-2-macroglobulin MG1 domain AIRS_C PF02769.17 gi|147918767|ref|YP_687509.1| - 9.9e-19 67.8 0.9 1.7e-18 67.0 0.7 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|147918767|ref|YP_687509.1| - 2.8e-12 46.6 0.2 7e-12 45.4 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ANAPC15 PF15243.1 gi|147918767|ref|YP_687509.1| - 0.096 12.7 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 15 Response_reg PF00072.19 gi|147918768|ref|YP_687508.1| - 1.3e-17 63.7 0.0 1.9e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.6 gi|147918768|ref|YP_687508.1| - 0.0059 16.7 0.0 0.0091 16.1 0.0 1.3 1 1 0 1 1 1 1 Flagellar regulatory protein FleQ RibD_C PF01872.12 gi|147918769|ref|YP_687507.1| - 4.2e-43 147.2 0.0 4.7e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain SAM_adeno_trans PF01887.11 gi|147918770|ref|YP_687506.1| - 1.1e-79 267.1 0.1 1.3e-79 266.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF4428 PF14471.1 gi|147918771|ref|YP_687505.1| - 0.022 14.5 0.2 0.15 11.8 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4428) zf-MYND PF01753.13 gi|147918771|ref|YP_687505.1| - 0.065 13.1 0.0 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 MYND finger HTH_45 PF14947.1 gi|147918772|ref|YP_687504.1| - 8.4e-09 35.1 0.4 1.4e-08 34.4 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|147918772|ref|YP_687504.1| - 2e-05 24.1 0.0 4.4e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|147918772|ref|YP_687504.1| - 0.0052 17.0 0.0 0.0094 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Peptidase_M29 PF02073.10 gi|147918773|ref|YP_687503.1| - 4.3e-17 61.9 0.1 8.2e-16 57.7 0.0 2.2 1 1 0 2 2 2 2 Thermophilic metalloprotease (M29) MoCF_biosynth PF00994.19 gi|147918774|ref|YP_687502.1| - 1.2e-33 115.5 0.1 1.6e-33 115.1 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF4352 PF11611.3 gi|147918775|ref|YP_687501.1| - 0.0014 18.7 0.1 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) ATP-sulfurylase PF01747.12 gi|147918776|ref|YP_687500.1| - 5.8e-79 264.3 0.0 9.3e-79 263.6 0.0 1.3 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|147918776|ref|YP_687500.1| - 4.1e-38 130.3 0.0 7.4e-38 129.4 0.0 1.4 1 0 0 1 1 1 1 PUA-like domain Trypsin_2 PF13365.1 gi|147918777|ref|YP_687499.1| - 5e-20 71.6 0.2 7.2e-20 71.1 0.2 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|147918777|ref|YP_687499.1| - 1.6e-14 53.5 0.3 3.4e-14 52.4 0.2 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|147918777|ref|YP_687499.1| - 1.6e-13 50.7 0.0 2.8e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|147918777|ref|YP_687499.1| - 5.7e-10 39.2 0.0 1.5e-09 37.8 0.0 1.8 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|147918777|ref|YP_687499.1| - 0.00036 19.0 0.5 0.0016 16.9 0.1 1.8 2 0 0 2 2 2 1 Peptidase S46 GRASP55_65 PF04495.9 gi|147918777|ref|YP_687499.1| - 0.0031 17.5 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_S7 PF00949.16 gi|147918777|ref|YP_687499.1| - 0.0089 15.4 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S32 PF05579.8 gi|147918777|ref|YP_687499.1| - 0.093 11.6 0.1 1.7 7.5 0.0 2.1 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 CxxCxxCC PF03692.10 gi|147918778|ref|YP_687498.1| - 5.4e-07 29.9 0.7 1e-06 29.1 0.5 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HATPase_c PF02518.21 gi|147918779|ref|YP_687497.1| - 2.1e-20 72.5 0.0 3.9e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cache_3 PF14827.1 gi|147918779|ref|YP_687497.1| - 4.8e-08 32.9 0.1 8.8e-06 25.5 0.0 2.7 2 0 0 2 2 2 1 Sensory domain of two-component sensor kinase HAMP PF00672.20 gi|147918779|ref|YP_687497.1| - 4.8e-07 29.8 1.3 1.1e-06 28.6 0.0 2.3 2 0 0 2 2 2 1 HAMP domain Cache_1 PF02743.13 gi|147918779|ref|YP_687497.1| - 0.00021 20.7 0.1 0.00085 18.8 0.0 2.1 1 0 0 1 1 1 1 Cache domain HATPase_c_5 PF14501.1 gi|147918779|ref|YP_687497.1| - 0.00039 20.0 0.0 0.0028 17.3 0.0 2.2 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|147918779|ref|YP_687497.1| - 0.0021 17.8 0.0 0.0053 16.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147918779|ref|YP_687497.1| - 0.0073 15.9 0.0 0.02 14.5 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|147918779|ref|YP_687497.1| - 0.07 13.1 0.8 0.2 11.6 0.6 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain NAM-associated PF14303.1 gi|147918779|ref|YP_687497.1| - 0.1 12.9 0.5 0.33 11.2 0.3 1.8 2 0 0 2 2 2 0 No apical meristem-associated C-terminal domain Med15_fungi PF05397.7 gi|147918779|ref|YP_687497.1| - 0.12 12.3 0.1 0.24 11.3 0.1 1.4 1 0 0 1 1 1 0 Mediator complex subunit 15 Response_reg PF00072.19 gi|147918780|ref|YP_687496.1| - 3.3e-20 72.1 0.1 3.7e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ArsB PF02040.10 gi|147918781|ref|YP_687495.1| - 1.2e-58 199.0 41.3 1.5e-58 198.8 28.6 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.11 gi|147918781|ref|YP_687495.1| - 6.9e-34 116.9 45.9 1.1e-33 116.3 31.8 1.2 1 0 0 1 1 1 1 Citrate transporter DUF3925 PF13063.1 gi|147918781|ref|YP_687495.1| - 2.3 8.3 11.5 0.072 13.1 1.8 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3925) Tmemb_18A PF09771.4 gi|147918781|ref|YP_687495.1| - 3.1 7.7 9.3 12 5.8 1.0 2.8 2 0 0 2 2 2 0 Transmembrane protein 188 PDT PF00800.13 gi|147918782|ref|YP_687494.1| - 2e-54 183.9 0.0 2.5e-54 183.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|147918782|ref|YP_687494.1| - 2.2e-10 39.8 0.0 3.8e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 ACT domain SBP_bac_3 PF00497.15 gi|147918782|ref|YP_687494.1| - 0.096 11.9 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 E1-E2_ATPase PF00122.15 gi|147918783|ref|YP_687493.1| - 1.4e-53 181.3 5.1 2.8e-53 180.3 3.6 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147918783|ref|YP_687493.1| - 5.2e-44 151.2 0.7 1.4e-43 149.8 0.1 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147918783|ref|YP_687493.1| - 3.3e-18 66.5 0.0 7.4e-18 65.4 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|147918783|ref|YP_687493.1| - 1.7e-08 34.3 0.0 0.0023 17.5 0.1 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|147918783|ref|YP_687493.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase MFS_1 PF07690.11 gi|147918784|ref|YP_687492.1| - 2.1e-50 171.4 56.4 7.7e-35 120.2 27.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147918784|ref|YP_687492.1| - 2.5e-10 39.3 32.2 2.3e-09 36.1 6.6 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|147918784|ref|YP_687492.1| - 2e-05 24.2 0.9 2e-05 24.2 0.6 2.8 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|147918784|ref|YP_687492.1| - 0.00099 17.7 17.0 0.00099 17.7 11.8 3.3 2 1 1 3 3 3 2 Sugar (and other) transporter tRNA-synt_2b PF00587.20 gi|147918785|ref|YP_687490.1| - 2e-22 79.6 0.1 3.9e-22 78.6 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|147918785|ref|YP_687490.1| - 8e-19 67.3 0.0 1.5e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|147918785|ref|YP_687490.1| - 6.6e-11 41.9 0.7 1.7e-10 40.6 0.5 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal UPF0150 PF03681.10 gi|147918785|ref|YP_687490.1| - 0.47 10.1 2.0 5.3 6.7 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0150) Pirin PF02678.11 gi|147918786|ref|YP_687489.1| - 7.5e-22 77.2 0.6 3.3e-21 75.1 0.3 1.8 2 0 0 2 2 2 1 Pirin Cupin_2 PF07883.6 gi|147918786|ref|YP_687489.1| - 0.003 17.0 0.5 0.032 13.7 0.2 2.3 2 0 0 2 2 2 1 Cupin domain AsnC_trans_reg PF01037.16 gi|147918787|ref|YP_687488.1| - 4.3e-10 39.1 0.1 4.8e-10 39.0 0.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|147918787|ref|YP_687488.1| - 0.0033 17.0 0.1 0.0036 17.0 0.1 1.2 1 0 0 1 1 1 1 GYD domain MIase PF02426.11 gi|147918787|ref|YP_687488.1| - 0.033 14.0 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Muconolactone delta-isomerase DUF981 PF06168.6 gi|147918788|ref|YP_687487.1| - 0.029 14.1 2.9 0.034 13.9 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF981) PrgI PF12666.2 gi|147918788|ref|YP_687487.1| - 0.15 12.2 4.4 0.23 11.6 3.0 1.4 1 1 0 1 1 1 0 PrgI family protein Na_H_Exchanger PF00999.16 gi|147918789|ref|YP_687486.1| - 1.9e-78 263.6 56.0 2.7e-78 263.1 38.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|147918789|ref|YP_687486.1| - 4.7e-24 84.6 0.1 9.8e-24 83.5 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|147918789|ref|YP_687486.1| - 1.5e-15 56.5 0.0 4.6e-15 54.9 0.0 1.8 1 0 0 1 1 1 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|147918790|ref|YP_687485.1| - 2.1e-50 171.3 50.7 2.5e-50 171.0 35.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|147918790|ref|YP_687485.1| - 1.6e-14 53.2 0.2 3.1e-14 52.3 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain Arif-1 PF06770.6 gi|147918790|ref|YP_687485.1| - 1.1 8.5 9.8 0.025 13.9 1.3 2.3 3 0 0 3 3 3 0 Actin-rearrangement-inducing factor (Arif-1) TrkA_N PF02254.13 gi|147918791|ref|YP_687484.1| - 2.8e-26 91.7 3.0 4.6e-26 91.0 2.0 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|147918791|ref|YP_687484.1| - 1.5e-16 59.6 2.1 4.9e-16 58.0 0.3 2.2 2 0 0 2 2 2 1 TrkA-C domain Saccharop_dh PF03435.13 gi|147918791|ref|YP_687484.1| - 1.1e-06 27.9 0.6 1.2e-06 27.7 0.4 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|147918791|ref|YP_687484.1| - 1.8e-05 24.9 0.3 3.3e-05 24.0 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|147918791|ref|YP_687484.1| - 1.9e-05 24.5 0.3 4e-05 23.4 0.2 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|147918791|ref|YP_687484.1| - 0.00018 21.9 0.6 0.0013 19.0 0.1 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|147918791|ref|YP_687484.1| - 0.0002 21.4 0.6 0.00058 19.9 0.2 1.8 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|147918791|ref|YP_687484.1| - 0.00026 20.4 1.2 0.00048 19.5 0.5 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|147918791|ref|YP_687484.1| - 0.00035 20.6 0.3 0.00063 19.7 0.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding XdhC_C PF13478.1 gi|147918791|ref|YP_687484.1| - 0.00066 19.9 0.1 0.00091 19.5 0.1 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|147918791|ref|YP_687484.1| - 0.0016 18.0 0.1 0.0024 17.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|147918791|ref|YP_687484.1| - 0.011 14.8 0.1 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|147918791|ref|YP_687484.1| - 0.016 14.4 0.9 0.032 13.5 0.6 1.4 1 0 0 1 1 1 0 NmrA-like family ApbA PF02558.11 gi|147918791|ref|YP_687484.1| - 0.02 14.3 0.5 0.37 10.2 0.1 2.2 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|147918791|ref|YP_687484.1| - 0.022 14.4 0.2 0.046 13.4 0.1 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Gp_dh_N PF00044.19 gi|147918791|ref|YP_687484.1| - 0.054 13.4 0.2 0.085 12.8 0.2 1.4 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain adh_short PF00106.20 gi|147918791|ref|YP_687484.1| - 0.058 13.3 0.4 0.19 11.6 0.1 1.8 1 1 1 2 2 2 0 short chain dehydrogenase DapB_N PF01113.15 gi|147918791|ref|YP_687484.1| - 0.083 12.8 2.2 4.5 7.2 1.3 2.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus TrkH PF02386.11 gi|147918792|ref|YP_687483.1| - 1.9e-52 178.0 27.5 3.7e-52 177.0 14.5 2.3 2 0 0 2 2 2 2 Cation transport protein DUF872 PF05915.7 gi|147918792|ref|YP_687483.1| - 0.24 11.2 0.1 0.24 11.2 0.1 3.8 3 1 1 4 4 4 0 Eukaryotic protein of unknown function (DUF872) Na_H_Exchanger PF00999.16 gi|147918793|ref|YP_687482.1| - 9.6e-39 132.9 57.5 1.2e-38 132.6 39.8 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Sulfate_tra_GLY PF13792.1 gi|147918793|ref|YP_687482.1| - 0.0015 18.1 2.0 0.0015 18.1 1.4 2.9 3 0 0 3 3 3 1 Sulfate transporter N-terminal domain with GLY motif Na_H_Exchanger PF00999.16 gi|147918794|ref|YP_687481.1| - 2e-66 224.1 52.4 5.1e-37 127.2 18.4 2.0 2 0 0 2 2 2 2 Sodium/hydrogen exchanger family IBR PF01485.16 gi|147918795|ref|YP_687480.1| - 0.098 12.5 1.4 0.18 11.7 1.0 1.4 1 0 0 1 1 1 0 IBR domain zf-Di19 PF05605.7 gi|147918795|ref|YP_687480.1| - 0.13 12.3 1.4 2 8.5 0.0 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.2 gi|147918795|ref|YP_687480.1| - 0.28 11.0 2.5 0.23 11.3 0.4 1.7 2 0 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|147918795|ref|YP_687480.1| - 0.44 10.3 2.6 0.46 10.3 0.4 2.0 2 0 0 2 2 2 0 zinc-ribbons UPF0052 PF01933.13 gi|147918796|ref|YP_687479.1| - 3.3e-49 167.8 0.0 4.2e-49 167.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 HD PF01966.17 gi|147918797|ref|YP_687478.1| - 1.2e-12 47.9 0.7 3.5e-12 46.3 0.5 1.9 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|147918797|ref|YP_687478.1| - 0.00056 19.2 0.0 0.0013 18.0 0.0 1.6 1 1 1 2 2 2 1 HDOD domain AIRC PF00731.15 gi|147918798|ref|YP_687477.1| - 0.3 10.3 1.6 2.6 7.2 0.4 2.0 1 1 1 2 2 2 0 AIR carboxylase Flavoprotein PF02441.14 gi|147918799|ref|YP_687476.1| - 2.5e-23 82.1 0.0 3.7e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein CBAH PF02275.13 gi|147918799|ref|YP_687476.1| - 0.068 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Linear amide C-N hydrolases, choloylglycine hydrolase family ThiF PF00899.16 gi|147918800|ref|YP_687475.1| - 8.6e-43 145.4 0.0 2e-42 144.2 0.0 1.6 2 0 0 2 2 2 1 ThiF family MoeZ_MoeB PF05237.8 gi|147918800|ref|YP_687475.1| - 1.5e-24 85.3 0.0 3.1e-24 84.3 0.0 1.6 1 0 0 1 1 1 1 MoeZ/MoeB domain 3HCDH_N PF02737.13 gi|147918800|ref|YP_687475.1| - 0.17 11.4 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3302 PF11742.3 gi|147918801|ref|YP_687474.1| - 0.06 13.2 0.5 0.11 12.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3302) UbiD PF01977.11 gi|147918802|ref|YP_687473.1| - 1.2e-113 379.6 1.8 1.4e-113 379.4 1.3 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF4250 PF14056.1 gi|147918802|ref|YP_687473.1| - 0.03 14.0 0.0 0.076 12.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) Radical_SAM PF04055.16 gi|147918803|ref|YP_687472.1| - 2e-09 37.8 0.2 4.3e-08 33.5 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|147918803|ref|YP_687472.1| - 4.3e-06 26.7 0.1 8.5e-06 25.7 0.1 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|147918803|ref|YP_687472.1| - 0.0002 21.5 0.0 0.00041 20.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF3260 PF11658.3 gi|147918803|ref|YP_687472.1| - 0.073 11.2 0.0 0.12 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3260) DUF2551 PF10826.3 gi|147918804|ref|YP_687471.1| - 2.4e-31 107.4 0.1 2.8e-31 107.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) Penicillinase_R PF03965.11 gi|147918804|ref|YP_687471.1| - 0.043 13.9 0.0 0.16 12.0 0.0 1.7 1 1 1 2 2 2 0 Penicillinase repressor DUF4167 PF13763.1 gi|147918804|ref|YP_687471.1| - 0.1 12.6 0.1 0.73 9.9 0.0 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4167) Prenyltransf PF01255.14 gi|147918805|ref|YP_687470.1| - 6.5e-77 257.6 0.7 8.1e-77 257.3 0.5 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF650 PF04894.7 gi|147918806|ref|YP_687469.1| - 4e-97 324.9 0.0 4.9e-97 324.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|147918806|ref|YP_687469.1| - 1e-40 137.8 0.0 1.8e-40 137.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|147918807|ref|YP_687468.1| - 3e-13 50.2 0.0 5.3e-13 49.4 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|147918807|ref|YP_687468.1| - 0.0062 16.5 0.0 0.018 15.0 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|147918807|ref|YP_687468.1| - 0.02 15.0 0.0 0.051 13.6 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF1848 PF08902.6 gi|147918807|ref|YP_687468.1| - 0.062 12.8 4.8 8.1 5.8 3.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) DUF2769 PF10967.3 gi|147918808|ref|YP_687467.1| - 1.1e-18 67.2 8.9 1.8e-18 66.5 6.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) zf-Paramyx-P PF13008.2 gi|147918808|ref|YP_687467.1| - 0.19 10.9 7.4 0.59 9.3 1.0 2.4 2 0 0 2 2 2 0 Zinc-binding domain of Paramyxoviridae V protein Rhodanese PF00581.15 gi|147918809|ref|YP_687466.1| - 2.9e-18 66.2 0.0 3.3e-18 66.0 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain tRNA_U5-meth_tr PF05958.6 gi|147918809|ref|YP_687466.1| - 0.08 11.6 0.0 0.085 11.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Rhodanese PF00581.15 gi|147918810|ref|YP_687465.1| - 1.6e-16 60.6 0.0 2.1e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain MFS_1 PF07690.11 gi|147918811|ref|YP_687464.1| - 1.6e-42 145.5 47.9 3.3e-34 118.1 28.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147918811|ref|YP_687464.1| - 2.6e-08 32.6 41.6 1.8e-07 29.9 29.0 2.1 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|147918811|ref|YP_687464.1| - 4.8e-07 28.2 27.4 1.1e-06 27.0 19.0 1.6 1 1 0 1 1 1 1 Transmembrane secretion effector ATG22 PF11700.3 gi|147918811|ref|YP_687464.1| - 8.7e-07 27.7 41.8 0.00013 20.5 16.7 2.1 1 1 1 2 2 2 2 Vacuole effluxer Atg22 like Sugar_tr PF00083.19 gi|147918811|ref|YP_687464.1| - 4.6e-05 22.1 13.3 4.6e-05 22.1 9.2 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter LacY_symp PF01306.14 gi|147918811|ref|YP_687464.1| - 6.6e-05 21.6 35.1 0.00015 20.4 9.1 2.1 1 1 1 2 2 2 2 LacY proton/sugar symporter P-II PF00543.17 gi|147918812|ref|YP_687462.1| - 5.8e-36 123.0 3.6 6.5e-36 122.8 2.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF970 PF06153.6 gi|147918812|ref|YP_687462.1| - 0.00099 19.0 1.3 0.91 9.5 0.0 2.8 2 1 1 3 3 3 2 Protein of unknown function (DUF970) Nit_Regul_Hom PF10126.4 gi|147918812|ref|YP_687462.1| - 0.061 13.0 0.1 1.3 8.8 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Ammonium_transp PF00909.16 gi|147918813|ref|YP_687461.1| - 7.2e-133 442.9 37.8 8.1e-133 442.7 26.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family RHH_1 PF01402.16 gi|147918814|ref|YP_687460.1| - 2e-07 30.6 0.0 5.4e-07 29.2 0.0 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|147918814|ref|YP_687460.1| - 0.0035 17.0 0.1 0.011 15.4 0.0 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix domain DEAD PF00270.24 gi|147918815|ref|YP_687459.1| - 1.1e-48 164.9 0.2 4e-48 163.0 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147918815|ref|YP_687459.1| - 1.1e-29 102.0 0.2 3.9e-29 100.3 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147918815|ref|YP_687459.1| - 9.6e-05 22.2 0.0 0.00021 21.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.9 gi|147918815|ref|YP_687459.1| - 0.0043 16.7 0.0 0.01 15.4 0.0 1.7 1 0 0 1 1 1 1 Helicase AAA_30 PF13604.1 gi|147918815|ref|YP_687459.1| - 0.029 13.9 0.0 0.11 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF1253 PF06862.7 gi|147918815|ref|YP_687459.1| - 0.036 12.4 0.0 0.83 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1253) Lactamase_B PF00753.22 gi|147918817|ref|YP_687457.1| - 1.3e-24 86.9 0.0 2e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|147918817|ref|YP_687457.1| - 1.7e-11 44.2 0.1 2.9e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|147918817|ref|YP_687457.1| - 0.0011 18.9 0.1 0.0057 16.6 0.0 2.1 2 1 0 2 2 2 1 Flavodoxin domain PGM_PMM_II PF02879.11 gi|147918817|ref|YP_687457.1| - 0.011 15.9 0.0 0.035 14.4 0.0 1.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FMN_red PF03358.10 gi|147918817|ref|YP_687457.1| - 0.014 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 NADPH-dependent FMN reductase DUF1108 PF06531.6 gi|147918819|ref|YP_687455.1| - 0.04 14.0 0.1 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1108) DUF1624 PF07786.7 gi|147918819|ref|YP_687455.1| - 0.041 13.2 0.1 0.058 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) DUF2298 PF10060.4 gi|147918821|ref|YP_687453.1| - 1.6e-57 195.4 43.5 1.7e-57 195.3 28.0 2.4 1 1 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) DUF1616 PF07760.6 gi|147918822|ref|YP_687452.1| - 0.0051 15.9 9.3 0.0061 15.7 6.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1212 PF06738.7 gi|147918822|ref|YP_687452.1| - 1 8.8 6.7 1.3 8.4 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) FA_desaturase PF00487.19 gi|147918822|ref|YP_687452.1| - 5 6.4 6.1 6.5 6.1 4.3 1.1 1 0 0 1 1 1 0 Fatty acid desaturase DUF3487 PF11990.3 gi|147918822|ref|YP_687452.1| - 9.7 5.6 11.1 4.7 6.6 4.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) Wyosine_form PF08608.7 gi|147918823|ref|YP_687451.1| - 9.4e-22 76.8 0.1 2e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|147918823|ref|YP_687451.1| - 4.6e-18 65.9 0.0 3.4e-17 63.1 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147918823|ref|YP_687451.1| - 0.0025 17.9 0.0 0.0045 17.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147918823|ref|YP_687451.1| - 0.0093 15.9 0.0 0.025 14.6 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|147918823|ref|YP_687451.1| - 0.049 13.8 0.0 0.099 12.8 0.0 1.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Desulfoferrodox PF01880.13 gi|147918824|ref|YP_687450.1| - 0.00066 19.9 0.2 0.0019 18.4 0.0 1.8 2 0 0 2 2 2 1 Desulfoferrodoxin SBDS_C PF09377.5 gi|147918824|ref|YP_687450.1| - 0.13 11.9 2.5 0.21 11.3 1.7 1.3 1 0 0 1 1 1 0 SBDS protein C-terminal domain Med8 PF10232.4 gi|147918824|ref|YP_687450.1| - 0.15 11.5 7.2 0.2 11.1 5.0 1.2 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 DUF1906 PF08924.6 gi|147918824|ref|YP_687450.1| - 0.35 10.7 3.2 0.55 10.0 2.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) Translin PF01997.11 gi|147918825|ref|YP_687449.1| - 8.6e-41 139.7 0.0 1e-40 139.5 0.0 1.1 1 0 0 1 1 1 1 Translin family MFS_1 PF07690.11 gi|147918826|ref|YP_687448.1| - 8.2e-43 146.4 56.2 1.8e-25 89.3 16.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|147918826|ref|YP_687448.1| - 4.9e-11 41.4 13.8 9.2e-10 37.2 9.6 2.0 1 1 0 1 1 1 1 Transmembrane secretion effector LacY_symp PF01306.14 gi|147918826|ref|YP_687448.1| - 0.00018 20.2 8.9 0.00018 20.2 6.2 2.7 1 1 1 2 2 2 1 LacY proton/sugar symporter ATG22 PF11700.3 gi|147918826|ref|YP_687448.1| - 0.0019 16.7 12.8 0.0019 16.7 8.9 2.1 2 0 0 2 2 2 1 Vacuole effluxer Atg22 like DUF588 PF04535.7 gi|147918826|ref|YP_687448.1| - 3.2 7.2 10.8 0.035 13.6 1.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF588) tRNA-synt_1g PF09334.6 gi|147918827|ref|YP_687447.1| - 3.5e-142 473.6 0.0 4.3e-142 473.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|147918827|ref|YP_687447.1| - 1.8e-27 94.9 0.5 3.7e-27 94.0 0.4 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|147918827|ref|YP_687447.1| - 6e-24 83.9 0.4 9.5e-12 43.7 0.0 4.8 4 1 0 4 4 4 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|147918827|ref|YP_687447.1| - 1.1e-11 44.4 0.1 1.1e-06 28.0 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|147918827|ref|YP_687447.1| - 1.3e-09 37.9 0.7 1.9e-09 37.4 0.1 1.6 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|147918827|ref|YP_687447.1| - 0.00034 19.3 0.0 0.11 11.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|147918827|ref|YP_687447.1| - 0.00089 18.1 0.0 0.2 10.4 0.0 2.6 1 1 0 2 2 2 2 tRNA synthetases class I (R) DZR PF12773.2 gi|147918827|ref|YP_687447.1| - 0.8 9.5 7.7 6.7 6.6 5.4 2.3 1 1 0 1 1 1 0 Double zinc ribbon Pribosyltran PF00156.22 gi|147918828|ref|YP_687446.1| - 6.1e-21 74.4 0.0 8.2e-21 74.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF3834 PF12916.2 gi|147918829|ref|YP_687445.1| - 0.058 12.3 0.1 0.085 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) SIS PF01380.17 gi|147918830|ref|YP_687444.1| - 6e-19 67.9 0.1 2e-18 66.2 0.0 1.8 2 0 0 2 2 2 1 SIS domain SIS_2 PF13580.1 gi|147918830|ref|YP_687444.1| - 4.8e-07 29.5 2.8 0.0037 16.9 0.2 2.3 1 1 1 2 2 2 2 SIS domain Flu_B_M2 PF04772.7 gi|147918830|ref|YP_687444.1| - 0.11 12.5 0.2 0.29 11.2 0.1 1.7 1 1 0 1 1 1 0 Influenza B matrix protein 2 (BM2) DUF2628 PF10947.3 gi|147918832|ref|YP_687442.1| - 0.016 14.9 0.1 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) PRD PF00874.15 gi|147918833|ref|YP_687441.1| - 0.023 14.8 0.7 0.03 14.4 0.2 1.6 2 0 0 2 2 2 0 PRD domain AsnA PF03590.10 gi|147918833|ref|YP_687441.1| - 0.024 14.0 0.1 0.03 13.7 0.1 1.0 1 0 0 1 1 1 0 Aspartate-ammonia ligase WbqC PF08889.6 gi|147918833|ref|YP_687441.1| - 0.043 13.2 0.1 0.053 12.9 0.0 1.1 1 0 0 1 1 1 0 WbqC-like protein family IF-2B PF01008.12 gi|147918834|ref|YP_687440.1| - 4e-92 308.1 1.9 4.6e-92 307.9 1.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family HTH_WhiA PF02650.9 gi|147918834|ref|YP_687440.1| - 2.7 8.4 5.6 1.2 9.5 0.1 3.0 4 0 0 4 4 4 0 WhiA C-terminal HTH domain PAS_9 PF13426.1 gi|147918835|ref|YP_687439.1| - 3.1e-33 114.2 0.1 2.3e-18 66.4 0.0 3.2 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|147918835|ref|YP_687439.1| - 2.1e-29 101.4 0.0 5e-13 48.9 0.0 3.5 3 1 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|147918835|ref|YP_687439.1| - 1.4e-28 99.1 0.0 3.9e-17 62.2 0.0 3.2 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|147918835|ref|YP_687439.1| - 1.4e-28 98.9 0.0 4.8e-16 58.5 0.0 3.3 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|147918835|ref|YP_687439.1| - 3.3e-20 72.1 0.2 6e-20 71.3 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|147918835|ref|YP_687439.1| - 1.7e-11 43.5 0.0 6.5e-05 22.6 0.0 3.2 2 1 1 3 3 3 2 PAS domain PAS_10 PF13596.1 gi|147918835|ref|YP_687439.1| - 0.015 15.6 0.0 0.034 14.4 0.0 1.7 1 0 0 1 1 1 0 PAS domain His_biosynth PF00977.16 gi|147918836|ref|YP_687438.1| - 0.0087 15.3 0.0 0.019 14.2 0.0 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein CitG PF01874.11 gi|147918837|ref|YP_687437.1| - 2.6e-76 256.4 0.0 2.9e-76 256.2 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF2575 PF10837.3 gi|147918837|ref|YP_687437.1| - 0.14 12.2 0.2 3.9 7.6 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2575) DUF447 PF04289.7 gi|147918838|ref|YP_687436.1| - 9e-46 155.6 0.0 1e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Pyridox_ox_2 PF12900.2 gi|147918838|ref|YP_687436.1| - 0.033 14.0 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DnaJ-X PF14308.1 gi|147918838|ref|YP_687436.1| - 0.11 11.8 0.0 0.26 10.5 0.0 1.6 2 0 0 2 2 2 0 X-domain of DnaJ-containing TFIIE_alpha PF02002.12 gi|147918839|ref|YP_687435.1| - 6.1e-08 32.1 2.7 7.9e-08 31.7 1.7 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit DUF387 PF04079.11 gi|147918839|ref|YP_687435.1| - 0.00025 20.4 0.8 0.00043 19.6 0.2 1.6 1 1 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) MarR_2 PF12802.2 gi|147918839|ref|YP_687435.1| - 0.00063 19.3 0.0 0.0018 17.9 0.0 1.7 2 0 0 2 2 2 1 MarR family Replic_Relax PF13814.1 gi|147918839|ref|YP_687435.1| - 0.0014 18.5 0.0 0.0018 18.1 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_5 PF01022.15 gi|147918839|ref|YP_687435.1| - 0.0015 18.1 0.5 0.0039 16.8 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|147918839|ref|YP_687435.1| - 0.0041 16.4 0.9 0.011 15.1 0.6 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|147918839|ref|YP_687435.1| - 0.0065 16.1 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|147918839|ref|YP_687435.1| - 0.0095 16.2 0.2 0.022 15.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|147918839|ref|YP_687435.1| - 0.028 14.5 0.6 0.087 12.9 0.1 1.8 2 0 0 2 2 2 0 Transcriptional regulator Nse5 PF08691.5 gi|147918839|ref|YP_687435.1| - 0.036 12.5 0.7 0.039 12.4 0.5 1.1 1 0 0 1 1 1 0 DNA repair proteins Nse5 and Nse6 Homoserine_dh PF00742.14 gi|147918839|ref|YP_687435.1| - 0.042 13.5 0.2 0.1 12.2 0.1 1.6 1 1 0 1 1 1 0 Homoserine dehydrogenase HTH_34 PF13601.1 gi|147918839|ref|YP_687435.1| - 0.055 13.4 0.8 0.14 12.2 0.4 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|147918839|ref|YP_687435.1| - 0.078 12.6 0.1 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain PadR PF03551.9 gi|147918839|ref|YP_687435.1| - 0.087 12.6 0.1 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family MarR PF01047.17 gi|147918839|ref|YP_687435.1| - 0.18 11.5 1.0 0.35 10.6 0.2 1.7 2 0 0 2 2 2 0 MarR family DUF116 PF01976.12 gi|147918840|ref|YP_687434.1| - 1.2e-48 164.5 0.1 1.5e-48 164.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 TPP_enzyme_C PF02775.16 gi|147918841|ref|YP_687433.1| - 6.8e-28 97.1 0.9 1.3e-27 96.3 0.6 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|147918841|ref|YP_687433.1| - 3.3e-14 52.9 0.1 8.4e-14 51.6 0.1 1.6 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|147918841|ref|YP_687433.1| - 1.8e-05 24.3 0.3 6e-05 22.5 0.1 2.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|147918841|ref|YP_687433.1| - 4.1e-05 22.9 16.4 0.00036 20.0 1.6 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147918841|ref|YP_687433.1| - 0.00049 20.4 13.0 0.0041 17.4 8.3 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147918841|ref|YP_687433.1| - 0.004 16.9 10.9 0.48 10.3 1.0 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147918841|ref|YP_687433.1| - 0.0056 16.5 13.0 0.034 14.0 1.6 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147918841|ref|YP_687433.1| - 0.0074 16.5 10.7 0.0074 16.5 7.4 2.1 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147918841|ref|YP_687433.1| - 0.0078 15.9 10.3 0.02 14.6 7.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147918841|ref|YP_687433.1| - 1.1 9.7 17.8 0.48 10.8 1.5 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147918841|ref|YP_687433.1| - 2.6 8.0 16.5 0.15 11.9 1.2 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147918841|ref|YP_687433.1| - 8.7 6.4 12.1 6.9 6.7 2.0 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147918841|ref|YP_687433.1| - 8.9 6.7 11.4 13 6.2 1.6 2.8 1 1 0 2 2 2 0 4Fe-4S dicluster domain POR PF01558.13 gi|147918842|ref|YP_687432.1| - 1e-39 136.2 0.3 1.2e-39 135.9 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase EamA PF00892.15 gi|147918843|ref|YP_687431.1| - 4.7e-51 172.0 38.9 4.3e-26 91.4 9.0 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|147918843|ref|YP_687431.1| - 2.1e-09 37.5 40.7 9.9e-09 35.3 8.5 3.8 3 1 1 4 4 4 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|147918843|ref|YP_687431.1| - 1.6e-05 23.9 24.6 3.6e-05 22.7 17.0 1.6 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|147918843|ref|YP_687431.1| - 0.03 13.9 30.1 0.092 12.3 8.7 3.0 2 1 0 2 2 2 0 Triose-phosphate Transporter family EamA PF00892.15 gi|147918844|ref|YP_687430.1| - 3.2e-42 143.5 39.8 4.5e-22 78.4 11.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|147918844|ref|YP_687430.1| - 2.4e-09 37.3 10.5 2.4e-09 37.3 7.3 3.3 3 1 0 3 3 3 1 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|147918844|ref|YP_687430.1| - 1.3e-06 27.4 20.6 1.7e-06 27.1 14.3 1.1 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|147918844|ref|YP_687430.1| - 0.00062 19.4 28.5 0.002 17.7 7.8 3.0 2 2 0 2 2 2 2 Triose-phosphate Transporter family Acetyltransf_10 PF13673.1 gi|147918845|ref|YP_687429.1| - 2.3e-07 30.9 0.0 5.2e-07 29.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147918845|ref|YP_687429.1| - 0.0031 17.6 0.0 0.0087 16.1 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MS_channel PF00924.13 gi|147918846|ref|YP_687428.1| - 1.5e-48 164.8 0.3 1.5e-48 164.8 0.2 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel YajC PF02699.10 gi|147918846|ref|YP_687428.1| - 0.12 12.0 0.0 0.49 10.0 0.0 2.0 2 0 0 2 2 2 0 Preprotein translocase subunit IGPD PF00475.13 gi|147918847|ref|YP_687427.1| - 1.3e-62 209.9 1.8 1.7e-62 209.6 1.2 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|147918848|ref|YP_687426.1| - 2.8e-76 255.7 4.4 3.2e-76 255.5 3.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|147918848|ref|YP_687426.1| - 2.6e-08 33.0 0.0 0.0045 15.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|147918848|ref|YP_687426.1| - 8e-08 31.8 3.7 4e-05 22.9 0.1 2.2 2 0 0 2 2 2 2 PcrB family ThiG PF05690.9 gi|147918848|ref|YP_687426.1| - 1e-06 28.0 0.4 0.036 13.1 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|147918848|ref|YP_687426.1| - 2.9e-06 26.6 2.0 0.00037 19.7 0.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.16 gi|147918848|ref|YP_687426.1| - 1.6e-05 24.0 0.2 6.2e-05 22.1 0.1 1.9 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Trp_syntA PF00290.15 gi|147918848|ref|YP_687426.1| - 2e-05 23.2 0.9 0.031 12.8 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain TMP-TENI PF02581.12 gi|147918848|ref|YP_687426.1| - 0.00016 20.8 1.2 0.00081 18.5 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|147918848|ref|YP_687426.1| - 0.00061 18.7 2.2 0.0051 15.7 0.2 2.2 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|147918848|ref|YP_687426.1| - 0.001 18.1 0.1 0.21 10.5 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|147918848|ref|YP_687426.1| - 0.0018 17.3 0.1 0.048 12.7 0.0 2.3 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase DUF561 PF04481.7 gi|147918848|ref|YP_687426.1| - 0.01 14.7 0.1 0.017 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) G3P_antiterm PF04309.7 gi|147918848|ref|YP_687426.1| - 0.029 13.3 0.4 0.23 10.4 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.20 gi|147918848|ref|YP_687426.1| - 0.041 12.7 6.7 0.061 12.2 0.7 2.3 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|147918848|ref|YP_687426.1| - 0.059 12.4 1.0 5.4 6.0 0.1 2.2 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Mem_trans PF03547.13 gi|147918850|ref|YP_687424.1| - 9.8e-29 99.8 25.3 1.9e-16 59.3 3.1 2.0 1 1 1 2 2 2 2 Membrane transport protein Usp PF00582.21 gi|147918851|ref|YP_687423.1| - 6.1e-25 88.0 0.0 3.5e-16 59.6 0.0 3.1 2 1 0 2 2 2 2 Universal stress protein family DUF3764 PF12594.3 gi|147918851|ref|YP_687423.1| - 0.11 12.2 0.0 0.46 10.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3764) DNA_pol_B PF00136.16 gi|147918852|ref|YP_687422.1| - 1.4e-92 310.9 0.9 2e-92 310.4 0.6 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|147918852|ref|YP_687422.1| - 1.6e-35 122.5 0.0 8.6e-34 116.8 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|147918852|ref|YP_687422.1| - 6.7e-13 48.7 0.0 1.4e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|147918852|ref|YP_687422.1| - 8.4e-11 41.7 0.0 1.6e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH PF00633.18 gi|147918854|ref|YP_687420.1| - 2.9e-08 32.9 0.0 8.8e-08 31.4 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|147918854|ref|YP_687420.1| - 2e-07 30.8 0.0 4.2e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.16 gi|147918854|ref|YP_687420.1| - 7.2e-07 29.5 0.3 0.0031 17.6 0.1 3.0 2 2 1 3 3 3 2 Radical SAM superfamily HHH_5 PF14520.1 gi|147918854|ref|YP_687420.1| - 0.00086 19.4 0.0 0.0022 18.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|147918854|ref|YP_687420.1| - 0.0049 16.7 0.0 0.0098 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|147918854|ref|YP_687420.1| - 0.01 15.6 0.1 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) Fer4_12 PF13353.1 gi|147918854|ref|YP_687420.1| - 0.036 14.1 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF4130 PF13566.1 gi|147918855|ref|YP_687419.1| - 1.5e-07 31.0 0.0 2.6e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4130 F420_ligase PF01996.11 gi|147918856|ref|YP_687418.1| - 8.1e-69 231.1 0.7 8.1e-69 231.1 0.5 1.3 2 0 0 2 2 2 1 F420-0:Gamma-glutamyl ligase TPR_12 PF13424.1 gi|147918858|ref|YP_687416.1| - 1.7e-14 53.4 2.9 2.3e-09 37.0 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147918858|ref|YP_687416.1| - 1.8e-06 27.3 0.9 0.55 10.2 0.0 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147918858|ref|YP_687416.1| - 8.8e-05 22.0 1.6 0.0037 16.8 0.1 2.4 1 1 2 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|147918858|ref|YP_687416.1| - 0.00019 20.8 0.2 0.29 10.8 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147918858|ref|YP_687416.1| - 0.00053 20.2 1.4 0.01 16.1 0.3 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147918858|ref|YP_687416.1| - 0.0016 18.0 0.3 0.082 12.7 0.1 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147918858|ref|YP_687416.1| - 0.005 16.9 0.5 2.1 8.5 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147918858|ref|YP_687416.1| - 0.0073 16.9 0.6 0.03 15.0 0.1 2.1 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|147918858|ref|YP_687416.1| - 0.35 10.8 1.4 9.4 6.3 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147918858|ref|YP_687416.1| - 0.47 11.2 2.7 7.2 7.5 0.0 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat NHL PF01436.16 gi|147918859|ref|YP_687415.1| - 5.9e-55 180.5 13.9 9.2e-10 37.9 0.1 6.5 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.6 gi|147918859|ref|YP_687415.1| - 4.1e-28 96.8 11.1 0.0015 18.2 0.0 6.9 6 0 0 6 6 6 6 Beta-propeller repeat Arylesterase PF01731.15 gi|147918859|ref|YP_687415.1| - 4e-09 36.3 0.1 4.1 7.4 0.0 6.3 6 0 0 6 6 6 2 Arylesterase Ldl_recept_b PF00058.12 gi|147918859|ref|YP_687415.1| - 1.7e-07 31.4 0.2 23 5.3 0.0 7.0 8 0 0 8 8 7 0 Low-density lipoprotein receptor repeat class B SGL PF08450.7 gi|147918859|ref|YP_687415.1| - 5.7e-07 29.1 15.9 0.012 15.0 0.4 4.5 1 1 4 5 5 5 3 SMP-30/Gluconolaconase/LRE-like region Kelch_6 PF13964.1 gi|147918859|ref|YP_687415.1| - 1.4e-05 25.0 17.3 0.7 10.1 0.0 6.1 6 1 0 6 6 6 3 Kelch motif Reg_prop PF07494.6 gi|147918859|ref|YP_687415.1| - 1.5e-05 24.3 0.2 51 4.3 0.0 6.4 6 0 0 6 6 6 0 Two component regulator propeller FlgD_ig PF13860.1 gi|147918859|ref|YP_687415.1| - 2.8e-05 23.7 0.7 2.8e-05 23.7 0.5 2.8 3 0 0 3 3 3 1 FlgD Ig-like domain SdiA-regulated PF06977.6 gi|147918859|ref|YP_687415.1| - 4.3e-05 22.5 1.8 12 4.7 0.0 5.5 6 0 0 6 6 6 0 SdiA-regulated MRJP PF03022.11 gi|147918859|ref|YP_687415.1| - 6.5e-05 22.2 4.5 1 8.4 0.0 4.8 1 1 2 5 5 5 2 Major royal jelly protein Kelch_4 PF13418.1 gi|147918859|ref|YP_687415.1| - 0.0029 17.3 14.9 5.7 6.7 0.0 6.4 6 0 0 6 6 6 1 Galactose oxidase, central domain Gemini_coat PF00844.13 gi|147918859|ref|YP_687415.1| - 0.0096 15.1 0.1 18 4.4 0.0 4.2 3 1 1 4 4 4 0 Geminivirus coat protein/nuclear export factor BR1 family DUF3528 PF12045.3 gi|147918859|ref|YP_687415.1| - 0.023 14.8 0.0 9.5 6.3 0.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3528) Peptidase_C93 PF06035.6 gi|147918859|ref|YP_687415.1| - 0.82 9.0 10.3 0.44 9.9 0.1 4.2 5 0 0 5 5 5 0 Bacterial transglutaminase-like cysteine proteinase BTLCP Kelch_3 PF13415.1 gi|147918859|ref|YP_687415.1| - 1.1 9.5 23.8 13 6.1 0.2 6.7 7 0 0 7 7 7 0 Galactose oxidase, central domain Peptidase_M9 PF01752.12 gi|147918859|ref|YP_687415.1| - 2.6 6.8 11.4 2 7.2 0.1 4.9 5 1 0 7 7 7 0 Collagenase Kelch_1 PF01344.20 gi|147918859|ref|YP_687415.1| - 5.5 6.6 22.1 9.7 5.8 0.3 6.3 6 0 0 6 6 6 0 Kelch motif NHL PF01436.16 gi|147918860|ref|YP_687414.1| - 1.4e-49 163.6 13.9 5.1e-08 32.4 0.0 6.6 6 0 0 6 6 6 6 NHL repeat SBBP PF06739.6 gi|147918860|ref|YP_687414.1| - 1.9e-24 85.1 24.9 0.00063 19.4 0.4 7.4 7 0 0 7 7 7 5 Beta-propeller repeat Arylesterase PF01731.15 gi|147918860|ref|YP_687414.1| - 7e-12 45.1 0.4 0.81 9.7 0.0 6.4 6 0 0 6 6 6 4 Arylesterase SGL PF08450.7 gi|147918860|ref|YP_687414.1| - 5.9e-10 38.9 17.5 0.0008 18.8 0.3 4.5 1 1 2 4 4 4 4 SMP-30/Gluconolaconase/LRE-like region MRJP PF03022.11 gi|147918860|ref|YP_687414.1| - 1.9e-07 30.6 5.2 0.26 10.4 0.0 5.0 2 1 3 5 5 5 3 Major royal jelly protein SdiA-regulated PF06977.6 gi|147918860|ref|YP_687414.1| - 1.4e-06 27.4 1.8 8.2 5.2 0.0 5.2 5 0 0 5 5 5 0 SdiA-regulated CHB_HEX_C PF03174.8 gi|147918860|ref|YP_687414.1| - 5.4e-06 26.1 20.5 0.003 17.3 0.1 3.8 3 0 0 3 3 3 2 Chitobiase/beta-hexosaminidase C-terminal domain Kelch_6 PF13964.1 gi|147918860|ref|YP_687414.1| - 2.9e-05 24.0 14.1 3 8.1 0.0 6.3 6 0 0 6 6 5 1 Kelch motif Kelch_4 PF13418.1 gi|147918860|ref|YP_687414.1| - 3.4e-05 23.5 11.1 2.5 7.9 0.0 6.0 5 0 0 5 5 5 1 Galactose oxidase, central domain CHB_HEX_C_1 PF13290.1 gi|147918860|ref|YP_687414.1| - 0.00064 19.4 16.3 0.0093 15.7 0.1 3.5 3 0 0 3 3 2 2 Chitobiase/beta-hexosaminidase C-terminal domain Gemini_coat PF00844.13 gi|147918860|ref|YP_687414.1| - 0.003 16.8 0.4 25 3.9 0.0 4.3 2 2 2 4 4 4 0 Geminivirus coat protein/nuclear export factor BR1 family Peptidase_M9 PF01752.12 gi|147918860|ref|YP_687414.1| - 0.0039 16.1 1.0 2.5 6.9 0.0 4.1 2 1 0 3 3 3 1 Collagenase Big_3_4 PF13754.1 gi|147918860|ref|YP_687414.1| - 0.0075 16.5 1.4 0.0075 16.5 0.9 8.3 8 3 2 10 10 7 2 Bacterial Ig-like domain (group 3) Kelch_1 PF01344.20 gi|147918860|ref|YP_687414.1| - 0.0084 15.6 13.1 13 5.4 0.1 5.7 5 0 0 5 5 5 0 Kelch motif PsbR PF04725.7 gi|147918860|ref|YP_687414.1| - 0.033 14.2 6.1 4.8 7.2 0.1 4.1 1 1 2 4 4 4 0 Photosystem II 10 kDa polypeptide PsbR ART PF01129.13 gi|147918860|ref|YP_687414.1| - 0.072 12.1 0.0 28 3.7 0.0 3.3 1 1 3 4 4 4 0 NAD:arginine ADP-ribosyltransferase ESPR PF13018.1 gi|147918860|ref|YP_687414.1| - 0.12 12.0 21.1 2.7 7.6 0.1 4.7 4 0 0 4 4 4 0 Extended Signal Peptide of Type V secretion system HET-s_218-289 PF11558.3 gi|147918860|ref|YP_687414.1| - 0.13 12.2 15.7 18 5.3 0.2 5.5 5 0 0 5 5 5 0 Het-s 218-289 RepA_N PF06970.6 gi|147918860|ref|YP_687414.1| - 0.16 11.7 1.7 1.3e+02 2.4 0.0 4.7 6 0 0 6 6 6 0 Replication initiator protein A (RepA) N-terminus Kelch_2 PF07646.10 gi|147918860|ref|YP_687414.1| - 0.87 9.4 9.9 1.2e+02 2.6 0.0 5.3 5 0 0 5 5 5 0 Kelch motif Kelch_3 PF13415.1 gi|147918860|ref|YP_687414.1| - 1.1 9.4 13.4 26 5.1 0.1 5.5 5 0 0 5 5 5 0 Galactose oxidase, central domain Strep_his_triad PF04270.8 gi|147918860|ref|YP_687414.1| - 1.4 8.6 7.6 37 4.1 0.0 4.5 5 0 0 5 5 5 0 Streptococcal histidine triad protein FlgD_ig PF13860.1 gi|147918861|ref|YP_687413.1| - 4.6e-06 26.2 2.0 7.4e-06 25.6 1.4 1.5 1 1 0 1 1 1 1 FlgD Ig-like domain tRNA-synt_1e PF01406.14 gi|147918862|ref|YP_687412.1| - 4.7e-126 419.9 0.0 7.2e-126 419.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|147918862|ref|YP_687412.1| - 7.3e-19 67.6 0.7 1.3e-08 33.9 0.1 3.0 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|147918862|ref|YP_687412.1| - 5.1e-12 44.5 0.0 2.2e-08 32.5 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|147918862|ref|YP_687412.1| - 1.9e-09 37.6 0.4 5.7e-09 36.1 0.1 2.0 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|147918862|ref|YP_687412.1| - 1.9e-08 33.3 0.4 3.7e-06 25.8 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|147918862|ref|YP_687412.1| - 0.0011 17.8 0.0 0.028 13.2 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (R) DUF1002 PF06207.6 gi|147918862|ref|YP_687412.1| - 0.21 10.8 3.0 5.8 6.1 0.2 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1002) SNARE_assoc PF09335.6 gi|147918863|ref|YP_687411.1| - 3.1e-28 98.4 4.1 3.1e-28 98.4 2.8 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein BRI3BP PF14965.1 gi|147918863|ref|YP_687411.1| - 0.69 9.2 6.2 0.041 13.2 0.8 1.6 2 0 0 2 2 2 0 Negative regulator of p53/TP53 DUF3816 PF12822.2 gi|147918863|ref|YP_687411.1| - 1.5 8.6 15.2 2.2 8.1 8.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3816) DUF4022 PF13214.1 gi|147918863|ref|YP_687411.1| - 1.6 8.8 7.5 0.17 11.9 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF4022) Sec23_helical PF04815.10 gi|147918864|ref|YP_687410.1| - 0.067 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Sec23/Sec24 helical domain Peptidase_MA_2 PF13485.1 gi|147918865|ref|YP_687409.1| - 1.8e-08 34.4 0.0 3.3e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase MA superfamily Pkip-1 PF06878.6 gi|147918866|ref|YP_687408.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Pkip-1 protein MC1 PF05854.6 gi|147918867|ref|YP_687407.1| - 5.1e-21 74.4 0.3 6.9e-21 74.0 0.2 1.2 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Phage_integrase PF00589.17 gi|147918869|ref|YP_687405.1| - 1.8e-42 144.9 0.4 2.5e-42 144.4 0.2 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|147918869|ref|YP_687405.1| - 2.3e-12 47.0 0.6 5.8e-11 42.5 0.0 2.8 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|147918869|ref|YP_687405.1| - 2.4e-08 34.0 0.0 8.4e-07 29.0 0.0 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|147918869|ref|YP_687405.1| - 4.6e-08 33.0 0.1 6.8e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 Integrase DUF3435 PF11917.3 gi|147918869|ref|YP_687405.1| - 0.0033 16.2 0.2 0.0056 15.4 0.1 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3435) HTH_11 PF08279.7 gi|147918869|ref|YP_687405.1| - 0.057 13.0 0.0 0.49 10.0 0.0 2.5 2 0 0 2 2 2 0 HTH domain HTH_DeoR PF08220.7 gi|147918869|ref|YP_687405.1| - 0.63 9.6 2.7 2.3 7.8 0.2 3.0 3 0 0 3 3 3 0 DeoR-like helix-turn-helix domain CxxCxxCC PF03692.10 gi|147918870|ref|YP_687404.1| - 2.5e-11 43.8 1.5 3.5e-11 43.4 1.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HTH_26 PF13443.1 gi|147918870|ref|YP_687404.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.2 gi|147918870|ref|YP_687404.1| - 0.14 12.2 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM_N PF08497.5 gi|147918871|ref|YP_687403.1| - 8.4e-134 445.2 0.0 1.5e-133 444.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.3 gi|147918871|ref|YP_687403.1| - 1e-17 64.4 0.0 1.8e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.16 gi|147918871|ref|YP_687403.1| - 1.4e-14 54.6 0.1 2.8e-13 50.3 0.1 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|147918871|ref|YP_687403.1| - 0.00024 20.9 0.1 0.015 15.1 0.0 3.1 2 1 0 2 2 2 1 B12 binding domain ABC_tran PF00005.22 gi|147918872|ref|YP_687402.1| - 1.9e-21 76.7 0.9 2.1e-09 37.7 0.0 4.2 3 1 0 3 3 3 3 ABC transporter AAA_21 PF13304.1 gi|147918872|ref|YP_687402.1| - 1.3e-10 41.7 1.5 0.0099 15.8 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|147918872|ref|YP_687402.1| - 1.9e-08 33.6 0.4 0.0032 16.9 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147918872|ref|YP_687402.1| - 8.2e-08 32.8 0.3 0.00011 22.5 0.1 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147918872|ref|YP_687402.1| - 1.1e-07 31.2 0.1 0.82 8.8 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|147918872|ref|YP_687402.1| - 2.7e-07 31.4 0.6 0.018 15.8 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_22 PF13401.1 gi|147918872|ref|YP_687402.1| - 4.7e-07 30.0 0.6 0.047 13.8 0.0 4.0 4 1 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|147918872|ref|YP_687402.1| - 8.4e-07 28.5 0.2 0.074 12.4 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|147918872|ref|YP_687402.1| - 2.2e-06 27.8 3.2 0.058 13.3 0.0 3.9 4 0 0 4 4 4 2 AAA ATPase domain AAA_19 PF13245.1 gi|147918872|ref|YP_687402.1| - 1.1e-05 25.0 0.5 0.37 10.5 0.0 3.5 3 0 0 3 3 3 2 Part of AAA domain AAA_33 PF13671.1 gi|147918872|ref|YP_687402.1| - 1.5e-05 24.8 0.0 0.19 11.6 0.0 3.1 3 0 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|147918872|ref|YP_687402.1| - 1.8e-05 23.9 0.6 0.18 11.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|147918872|ref|YP_687402.1| - 2.9e-05 23.7 0.9 0.02 14.5 0.0 3.1 3 0 0 3 3 3 1 Adenylylsulphate kinase NACHT PF05729.7 gi|147918872|ref|YP_687402.1| - 3.8e-05 23.3 0.1 0.091 12.4 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_18 PF13238.1 gi|147918872|ref|YP_687402.1| - 6e-05 23.3 0.4 0.19 12.0 0.1 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|147918872|ref|YP_687402.1| - 7.1e-05 22.7 0.1 0.07 13.0 0.0 2.9 3 0 0 3 3 2 1 AAA domain MobB PF03205.9 gi|147918872|ref|YP_687402.1| - 0.00014 21.6 0.4 0.15 11.7 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|147918872|ref|YP_687402.1| - 0.00017 21.1 0.3 0.73 9.2 0.0 3.3 3 0 0 3 3 3 1 AAA-like domain AAA_15 PF13175.1 gi|147918872|ref|YP_687402.1| - 0.00018 20.6 0.0 0.2 10.6 0.0 3.1 3 0 0 3 3 3 1 AAA ATPase domain KaiC PF06745.8 gi|147918872|ref|YP_687402.1| - 0.00021 20.4 0.1 0.034 13.2 0.0 2.4 2 0 0 2 2 2 1 KaiC DUF2075 PF09848.4 gi|147918872|ref|YP_687402.1| - 0.00067 18.7 0.4 0.65 8.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|147918872|ref|YP_687402.1| - 0.0011 18.5 0.2 0.28 10.6 0.1 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.18 gi|147918872|ref|YP_687402.1| - 0.0012 18.7 0.1 0.33 10.9 0.0 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|147918872|ref|YP_687402.1| - 0.0013 18.2 0.5 0.14 11.5 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family DnaJ_CXXCXGXG PF00684.14 gi|147918872|ref|YP_687402.1| - 0.0017 18.3 9.6 0.013 15.5 0.2 3.7 4 0 0 4 4 3 1 DnaJ central domain NTPase_1 PF03266.10 gi|147918872|ref|YP_687402.1| - 0.0052 16.4 1.3 2.7 7.6 0.1 2.5 2 0 0 2 2 2 1 NTPase NB-ARC PF00931.17 gi|147918872|ref|YP_687402.1| - 0.0069 15.2 0.1 0.16 10.7 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain PRK PF00485.13 gi|147918872|ref|YP_687402.1| - 0.0095 15.5 1.3 3 7.3 0.0 2.7 3 0 0 3 3 2 1 Phosphoribulokinase / Uridine kinase family ArgK PF03308.11 gi|147918872|ref|YP_687402.1| - 0.015 14.1 0.1 4.5 5.9 0.0 2.3 2 0 0 2 2 2 0 ArgK protein cobW PF02492.14 gi|147918872|ref|YP_687402.1| - 0.016 14.6 1.7 1.9 7.9 0.1 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA12 PF10443.4 gi|147918872|ref|YP_687402.1| - 0.023 13.1 0.1 0.61 8.5 0.0 2.3 2 0 0 2 2 2 0 RNA12 protein Zeta_toxin PF06414.7 gi|147918872|ref|YP_687402.1| - 0.032 13.3 0.1 1.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.11 gi|147918872|ref|YP_687402.1| - 0.04 13.1 0.3 0.56 9.3 0.0 2.6 3 0 0 3 3 3 0 PhoH-like protein T2SE PF00437.15 gi|147918872|ref|YP_687402.1| - 0.043 12.6 0.2 1.2 7.9 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.10 gi|147918872|ref|YP_687402.1| - 0.044 12.4 0.0 0.22 10.1 0.0 1.9 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Zn-ribbon_8 PF09723.5 gi|147918872|ref|YP_687402.1| - 0.046 13.6 13.3 2.1 8.3 1.3 4.5 4 1 1 5 5 5 0 Zinc ribbon domain Miro PF08477.8 gi|147918872|ref|YP_687402.1| - 0.059 13.8 0.8 2.5 8.6 0.0 2.7 3 0 0 3 3 2 0 Miro-like protein zf-ribbon_3 PF13248.1 gi|147918872|ref|YP_687402.1| - 0.06 12.5 7.0 0.81 8.9 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Arch_ATPase PF01637.13 gi|147918872|ref|YP_687402.1| - 0.069 12.8 0.2 6.5 6.3 0.0 2.3 2 0 0 2 2 2 0 Archaeal ATPase DAP3 PF10236.4 gi|147918872|ref|YP_687402.1| - 0.089 11.7 0.5 10 4.9 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 BCA_ABC_TP_C PF12399.3 gi|147918872|ref|YP_687402.1| - 0.094 12.4 3.0 5 6.9 0.1 2.4 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter RNA_helicase PF00910.17 gi|147918872|ref|YP_687402.1| - 0.094 12.8 0.2 21 5.3 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Terminase_GpA PF05876.7 gi|147918872|ref|YP_687402.1| - 0.11 10.8 0.6 0.2 9.9 0.4 1.3 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) AAA_30 PF13604.1 gi|147918872|ref|YP_687402.1| - 0.15 11.5 0.1 12 5.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain DZR PF12773.2 gi|147918872|ref|YP_687402.1| - 0.69 9.7 12.6 0.047 13.5 1.9 3.2 3 1 0 3 3 3 0 Double zinc ribbon UPF0547 PF10571.4 gi|147918872|ref|YP_687402.1| - 8.3 6.2 12.2 4.2 7.1 0.9 3.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 OMPdecase PF00215.19 gi|147918875|ref|YP_687399.1| - 3.7e-46 157.3 0.7 5.3e-46 156.8 0.5 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PcrB PF01884.12 gi|147918875|ref|YP_687399.1| - 2.9e-05 23.4 0.1 0.0021 17.3 0.0 2.2 2 0 0 2 2 2 1 PcrB family NIF3 PF01784.13 gi|147918875|ref|YP_687399.1| - 0.004 16.7 0.5 0.018 14.6 0.1 1.9 2 0 0 2 2 2 1 NIF3 (NGG1p interacting factor 3) ADH_zinc_N PF00107.21 gi|147918875|ref|YP_687399.1| - 0.0067 15.9 1.8 3.2 7.2 0.1 2.9 1 1 1 2 2 2 2 Zinc-binding dehydrogenase ThiG PF05690.9 gi|147918875|ref|YP_687399.1| - 0.0072 15.4 0.2 0.014 14.4 0.1 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|147918875|ref|YP_687399.1| - 0.011 14.6 2.0 0.015 14.1 1.4 1.4 1 1 0 1 1 1 0 FMN-dependent dehydrogenase AAA_33 PF13671.1 gi|147918875|ref|YP_687399.1| - 0.073 12.9 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain Ribul_P_3_epim PF00834.14 gi|147918875|ref|YP_687399.1| - 0.12 11.4 0.2 0.64 9.0 0.1 2.0 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Clp1 PF06807.9 gi|147918876|ref|YP_687398.1| - 1.1e-05 25.2 0.0 3.4e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Pre-mRNA cleavage complex II protein Clp1 AAA_33 PF13671.1 gi|147918876|ref|YP_687398.1| - 0.00052 19.9 0.0 0.0013 18.6 0.0 1.7 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|147918876|ref|YP_687398.1| - 0.00055 19.6 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|147918876|ref|YP_687398.1| - 0.0028 17.6 0.0 0.012 15.6 0.0 2.1 3 0 0 3 3 3 1 AAA ATPase domain AAA_17 PF13207.1 gi|147918876|ref|YP_687398.1| - 0.01 16.6 0.0 0.027 15.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|147918876|ref|YP_687398.1| - 0.015 15.4 0.0 0.034 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|147918876|ref|YP_687398.1| - 0.034 13.3 0.0 0.061 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|147918876|ref|YP_687398.1| - 0.062 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Peptidase_S49 PF01343.13 gi|147918877|ref|YP_687397.1| - 1.9e-46 157.6 0.4 2.6e-46 157.1 0.2 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|147918877|ref|YP_687397.1| - 2.3e-08 33.9 0.3 4.2e-05 23.3 0.1 2.2 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.11 gi|147918877|ref|YP_687397.1| - 2.6e-06 26.4 0.3 4e-06 25.8 0.2 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Ligase_CoA PF00549.14 gi|147918877|ref|YP_687397.1| - 0.041 13.4 0.1 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 CoA-ligase Aa_trans PF01490.13 gi|147918877|ref|YP_687397.1| - 0.082 11.3 0.1 0.1 11.0 0.0 1.1 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein Pentapeptide_4 PF13599.1 gi|147918878|ref|YP_687396.1| - 1.1e-22 79.5 14.3 6e-12 45.1 3.7 3.4 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|147918878|ref|YP_687396.1| - 4.5e-18 64.0 8.1 1.1e-06 27.7 0.3 5.8 3 2 3 6 6 6 5 Pentapeptide repeats (8 copies) Pentapeptide_3 PF13576.1 gi|147918878|ref|YP_687396.1| - 1.5e-16 59.9 6.6 0.00011 22.0 0.1 5.5 1 1 3 4 4 4 4 Pentapeptide repeats (9 copies) DUF1248 PF06852.7 gi|147918878|ref|YP_687396.1| - 0.082 12.1 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1248) CfAFP PF05264.6 gi|147918878|ref|YP_687396.1| - 0.15 11.8 1.9 0.43 10.3 0.3 2.2 1 1 1 2 2 2 0 Choristoneura fumiferana antifreeze protein (CfAFP) MFS_1 PF07690.11 gi|147918879|ref|YP_687395.1| - 2.2e-47 161.4 63.3 1.4e-32 112.7 30.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147918879|ref|YP_687395.1| - 1.1e-09 37.1 44.5 3e-08 32.5 7.9 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|147918879|ref|YP_687395.1| - 6.2e-07 28.3 21.4 6.2e-07 28.3 14.8 2.8 1 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|147918879|ref|YP_687395.1| - 0.001 18.7 3.5 0.001 18.7 2.4 4.1 5 1 1 6 6 6 1 MFS_1 like family MFS_3 PF05977.8 gi|147918879|ref|YP_687395.1| - 0.043 11.9 21.2 0.024 12.7 1.6 2.9 2 2 0 3 3 3 0 Transmembrane secretion effector LysE PF01810.13 gi|147918880|ref|YP_687394.1| - 9.7e-30 103.2 14.5 1.1e-29 103.0 10.0 1.0 1 0 0 1 1 1 1 LysE type translocator DUF1673 PF07895.6 gi|147918880|ref|YP_687394.1| - 2.6 7.5 8.7 0.3 10.6 2.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) NMT1 PF09084.6 gi|147918881|ref|YP_687393.1| - 2.8e-10 40.1 0.1 4.8e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|147918881|ref|YP_687393.1| - 8.6e-08 31.8 0.7 1.5e-07 31.0 0.5 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|147918881|ref|YP_687393.1| - 0.00091 18.6 0.5 0.0015 17.9 0.4 1.3 1 0 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|147918881|ref|YP_687393.1| - 0.0027 17.0 0.1 0.005 16.1 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 PBP_like_2 PF12849.2 gi|147918881|ref|YP_687393.1| - 0.0028 17.1 4.7 0.0043 16.5 3.3 1.3 1 0 0 1 1 1 1 PBP superfamily domain TroA PF01297.12 gi|147918881|ref|YP_687393.1| - 0.0036 16.5 0.0 0.0051 16.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic solute binding protein family DUF1850 PF08905.6 gi|147918882|ref|YP_687392.1| - 1.2e-17 63.4 0.0 1.7e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NmrA PF05368.8 gi|147918882|ref|YP_687392.1| - 0.058 12.6 0.0 0.072 12.3 0.0 1.1 1 0 0 1 1 1 0 NmrA-like family DUF4480 PF13715.1 gi|147918882|ref|YP_687392.1| - 0.087 12.8 0.8 0.63 10.1 0.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4480) SBBP PF06739.6 gi|147918882|ref|YP_687392.1| - 0.19 11.5 1.7 0.23 11.2 0.1 1.9 2 0 0 2 2 2 0 Beta-propeller repeat DctM PF06808.7 gi|147918883|ref|YP_687391.1| - 3.7e-87 292.5 56.3 3.7e-87 292.5 39.0 2.9 3 1 0 3 3 3 1 DctM-like transporters DUF2769 PF10967.3 gi|147918884|ref|YP_687390.1| - 1.3e-16 60.5 15.2 1.8e-16 60.1 10.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) TerY-C PF15616.1 gi|147918884|ref|YP_687390.1| - 0.26 11.2 11.8 0.67 9.8 8.1 1.6 1 1 0 1 1 1 0 TerY-C metal binding domain CarboxypepD_reg PF13620.1 gi|147918885|ref|YP_687389.1| - 2.1e-07 30.8 27.3 9.7e-05 22.3 5.1 3.0 2 1 2 4 4 4 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147918885|ref|YP_687389.1| - 5.9e-06 26.2 6.6 0.0097 15.9 0.4 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) DUF4198 PF10670.4 gi|147918885|ref|YP_687389.1| - 0.00014 21.9 2.6 0.4 10.6 0.0 2.8 1 1 2 3 3 3 2 Domain of unknown function (DUF4198) DUF4198 PF10670.4 gi|147918886|ref|YP_687388.1| - 0.041 13.8 0.8 3.4 7.6 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4198) AIG2 PF06094.7 gi|147918887|ref|YP_687387.1| - 9.1e-17 61.4 0.0 1e-16 61.2 0.0 1.0 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|147918887|ref|YP_687387.1| - 8e-07 29.0 0.0 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family DUF473 PF04322.7 gi|147918888|ref|YP_687386.1| - 1.1e-41 141.2 0.0 1.2e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.4 gi|147918889|ref|YP_687385.1| - 2.9e-47 161.3 0.0 3.6e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 PAC2 family RIO1 PF01163.17 gi|147918891|ref|YP_687383.1| - 3.4e-45 153.7 1.2 4.7e-45 153.2 0.9 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|147918891|ref|YP_687383.1| - 3.3e-24 84.7 0.1 7.8e-24 83.5 0.1 1.7 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|147918891|ref|YP_687383.1| - 0.00037 20.2 0.0 0.007 16.1 0.0 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|147918891|ref|YP_687383.1| - 0.00048 19.3 0.1 0.0012 18.1 0.1 1.5 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|147918891|ref|YP_687383.1| - 0.026 13.7 0.2 0.042 13.0 0.1 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.15 gi|147918891|ref|YP_687383.1| - 0.034 13.7 0.1 0.31 10.6 0.0 2.4 3 0 0 3 3 3 0 Choline/ethanolamine kinase TrmB PF01978.14 gi|147918891|ref|YP_687383.1| - 0.076 12.7 1.4 3.7 7.3 0.2 2.9 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB RBB1NT PF08169.6 gi|147918892|ref|YP_687382.1| - 0.052 13.4 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 RBB1NT (NUC162) domain S-AdoMet_synt_C PF02773.11 gi|147918893|ref|YP_687381.1| - 2.8e-70 234.4 0.1 6.3e-70 233.2 0.1 1.6 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, C-terminal domain S-AdoMet_synt_M PF02772.11 gi|147918893|ref|YP_687381.1| - 2.2e-54 182.5 1.0 5.7e-53 177.9 0.4 2.8 2 1 0 2 2 2 1 S-adenosylmethionine synthetase, central domain S-AdoMet_synt_N PF00438.15 gi|147918893|ref|YP_687381.1| - 1.3e-43 147.3 0.5 4.8e-43 145.4 0.1 2.0 2 0 0 2 2 2 1 S-adenosylmethionine synthetase, N-terminal domain Colicin_Ia PF11504.3 gi|147918893|ref|YP_687381.1| - 0.17 11.7 0.5 0.46 10.4 0.1 1.9 2 0 0 2 2 2 0 Colicin Ia DisA_N PF02457.11 gi|147918894|ref|YP_687380.1| - 4.9e-27 93.4 0.4 1.4e-26 92.0 0.0 1.8 2 0 0 2 2 2 1 DisA bacterial checkpoint controller nucleotide-binding TROVE PF05731.6 gi|147918894|ref|YP_687380.1| - 0.19 10.4 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 TROVE domain FKBP_C PF00254.23 gi|147918895|ref|YP_687379.1| - 2e-22 79.0 0.0 3e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Metallophos_2 PF12850.2 gi|147918896|ref|YP_687378.1| - 4.1e-08 33.2 0.2 6.8e-08 32.4 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147918896|ref|YP_687378.1| - 2.9e-07 30.0 0.6 2.4e-06 27.0 0.4 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF2204 PF09970.4 gi|147918897|ref|YP_687377.1| - 1.7e-61 206.8 0.0 1.9e-61 206.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.1 gi|147918897|ref|YP_687377.1| - 4.8e-10 39.1 0.1 9.8e-10 38.1 0.1 1.4 1 1 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF1814 PF08843.6 gi|147918897|ref|YP_687377.1| - 0.0052 16.5 0.1 0.026 14.3 0.1 1.9 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) E1-E2_ATPase PF00122.15 gi|147918898|ref|YP_687376.1| - 2.1e-70 236.3 4.8 2.1e-70 236.3 3.3 2.7 3 1 1 4 4 4 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|147918898|ref|YP_687376.1| - 4.4e-48 163.2 6.7 4.4e-48 163.2 4.6 2.8 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|147918898|ref|YP_687376.1| - 1.1e-31 110.9 0.0 3.6e-31 109.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|147918898|ref|YP_687376.1| - 3.2e-23 80.9 0.0 8.3e-23 79.6 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|147918898|ref|YP_687376.1| - 6.9e-20 70.8 0.0 1.3e-19 69.8 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|147918898|ref|YP_687376.1| - 3.4e-14 53.4 0.0 7e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|147918898|ref|YP_687376.1| - 0.0012 18.5 3.1 0.05 13.1 1.0 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Usp PF00582.21 gi|147918899|ref|YP_687375.1| - 4.7e-32 111.1 0.5 5.5e-32 110.8 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_kinase PF00696.23 gi|147918900|ref|YP_687374.1| - 2.2e-43 148.5 1.6 2.6e-43 148.2 1.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Pyr_redox_2 PF07992.9 gi|147918901|ref|YP_687373.1| - 2.5e-28 99.3 0.4 3.3e-28 98.9 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|147918901|ref|YP_687373.1| - 1.9e-12 47.6 0.1 1.4e-07 31.8 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|147918901|ref|YP_687373.1| - 5e-10 38.7 3.5 6.9e-05 21.8 0.3 3.1 2 1 1 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|147918901|ref|YP_687373.1| - 9.7e-09 34.5 2.6 0.00015 20.7 0.2 2.6 2 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|147918901|ref|YP_687373.1| - 2.9e-06 26.0 0.4 0.00045 18.7 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.19 gi|147918901|ref|YP_687373.1| - 1.2e-05 24.3 0.1 0.039 12.8 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|147918901|ref|YP_687373.1| - 0.00035 19.7 0.1 0.00082 18.5 0.1 1.6 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|147918901|ref|YP_687373.1| - 0.00052 19.2 0.5 0.0012 17.9 0.3 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|147918901|ref|YP_687373.1| - 0.016 15.5 0.2 2.6 8.5 0.0 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|147918901|ref|YP_687373.1| - 0.039 13.9 0.9 0.084 12.9 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|147918901|ref|YP_687373.1| - 0.078 12.1 0.1 0.44 9.6 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|147918901|ref|YP_687373.1| - 0.083 11.9 0.8 0.1 11.6 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.7 gi|147918901|ref|YP_687373.1| - 0.11 11.4 0.1 0.92 8.3 0.2 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Lactate_perm PF02652.9 gi|147918902|ref|YP_687372.1| - 1.8e-47 162.0 56.1 3.3e-46 157.8 38.9 1.9 1 1 0 1 1 1 1 L-lactate permease DUF3318 PF11780.3 gi|147918902|ref|YP_687372.1| - 0.28 10.7 3.1 0.57 9.7 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) Prok-E2_E PF14462.1 gi|147918903|ref|YP_687371.1| - 1.4e-07 31.1 0.0 2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic E2 family E ThiF PF00899.16 gi|147918904|ref|YP_687370.1| - 1.2e-25 89.8 0.1 2e-25 89.1 0.1 1.3 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|147918904|ref|YP_687370.1| - 0.0014 17.8 0.0 0.0036 16.4 0.0 1.8 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Prok-JAB PF14464.1 gi|147918904|ref|YP_687370.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain UBACT PF02134.16 gi|147918904|ref|YP_687370.1| - 0.056 13.0 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 Repeat in ubiquitin-activating (UBA) protein Paramyxo_NS_C PF02725.9 gi|147918905|ref|YP_687369.1| - 0.023 14.3 1.0 0.03 13.9 0.7 1.1 1 0 0 1 1 1 0 Non-structural protein C CHASE3 PF05227.8 gi|147918905|ref|YP_687369.1| - 0.046 13.4 3.3 0.052 13.2 1.6 1.5 1 1 0 1 1 1 0 CHASE3 domain DALR_1 PF05746.10 gi|147918905|ref|YP_687369.1| - 0.15 12.0 0.6 0.3 11.0 0.4 1.6 1 1 0 1 1 1 0 DALR anticodon binding domain CxxCxxCC PF03692.10 gi|147918906|ref|YP_687368.1| - 4.4e-07 30.2 6.3 5.8e-07 29.8 4.4 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain SUI1 PF01253.17 gi|147918907|ref|YP_687367.1| - 2.6e-22 78.4 1.3 3e-22 78.2 0.9 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.10 gi|147918907|ref|YP_687367.1| - 0.1 11.7 0.4 0.13 11.4 0.2 1.2 1 0 0 1 1 1 0 DTW domain KGG PF10685.4 gi|147918909|ref|YP_687365.1| - 1.3e-08 34.6 5.2 0.035 14.0 0.6 3.5 3 0 0 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|147918909|ref|YP_687365.1| - 8.2e-07 29.2 16.0 0.00071 19.8 4.1 2.0 1 1 1 2 2 2 2 Small hydrophilic plant seed protein SASP PF00269.15 gi|147918909|ref|YP_687365.1| - 0.12 12.2 8.6 1.3 8.9 0.6 2.4 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type LEA_5 PF00477.12 gi|147918910|ref|YP_687364.1| - 1.9e-06 28.0 16.8 0.0038 17.4 3.9 2.1 1 1 1 2 2 2 2 Small hydrophilic plant seed protein KGG PF10685.4 gi|147918910|ref|YP_687364.1| - 0.00012 21.9 18.4 0.07 13.1 0.0 4.2 4 0 0 4 4 4 3 Stress-induced bacterial acidophilic repeat motif YjzC PF14168.1 gi|147918910|ref|YP_687364.1| - 0.75 9.7 4.8 11 6.0 0.2 2.4 1 1 1 2 2 2 0 YjzC-like protein SASP PF00269.15 gi|147918910|ref|YP_687364.1| - 6.7 6.6 13.4 6.7 6.6 0.2 2.9 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type DDE_Tnp_1 PF01609.16 gi|147918912|ref|YP_684916.1| - 1.1e-05 25.0 0.1 3.9e-05 23.2 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain Archease PF01951.11 gi|147918912|ref|YP_684916.1| - 0.11 12.4 0.1 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 Archease protein family (MTH1598/TM1083) Na_H_Exchanger PF00999.16 gi|147918913|ref|YP_687361.1| - 6.9e-55 186.1 55.0 8.8e-55 185.7 38.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family AP_endonuc_2 PF01261.19 gi|147918914|ref|YP_687360.1| - 3.7e-18 65.5 0.1 4.5e-18 65.3 0.1 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF849 PF05853.7 gi|147918914|ref|YP_687360.1| - 0.00035 19.5 0.5 0.00071 18.5 0.3 1.6 1 1 0 1 1 1 1 Prokaryotic protein of unknown function (DUF849) ComA PF02679.10 gi|147918914|ref|YP_687360.1| - 0.0083 15.1 0.1 0.012 14.6 0.1 1.2 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) DeoC PF01791.4 gi|147918914|ref|YP_687360.1| - 0.014 14.6 0.1 0.02 14.1 0.1 1.2 1 0 0 1 1 1 0 DeoC/LacD family aldolase Dus PF01207.12 gi|147918914|ref|YP_687360.1| - 0.018 13.9 0.0 0.027 13.3 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) HMGL-like PF00682.14 gi|147918914|ref|YP_687360.1| - 0.024 14.2 0.1 0.035 13.7 0.1 1.2 1 0 0 1 1 1 0 HMGL-like ThiC PF01964.13 gi|147918914|ref|YP_687360.1| - 0.042 12.3 0.1 1.2 7.5 0.0 2.0 1 1 1 2 2 2 0 ThiC family ABC_tran PF00005.22 gi|147918915|ref|YP_687359.1| - 7.5e-32 110.4 0.0 1.4e-31 109.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147918915|ref|YP_687359.1| - 2.4e-11 44.1 3.0 5.6e-05 23.2 0.1 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147918915|ref|YP_687359.1| - 1.3e-08 34.3 0.1 2.6e-08 33.3 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|147918915|ref|YP_687359.1| - 8.1e-06 25.1 1.4 0.017 14.2 0.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|147918915|ref|YP_687359.1| - 2e-05 24.0 0.5 6.6e-05 22.3 0.1 2.1 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|147918915|ref|YP_687359.1| - 3.1e-05 24.7 0.0 6.8e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147918915|ref|YP_687359.1| - 4.3e-05 23.5 0.4 0.0056 16.6 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|147918915|ref|YP_687359.1| - 0.00046 19.7 0.1 0.00084 18.8 0.0 1.5 2 0 0 2 2 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ArgK PF03308.11 gi|147918915|ref|YP_687359.1| - 0.0011 17.7 0.1 0.002 16.9 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_22 PF13401.1 gi|147918915|ref|YP_687359.1| - 0.0026 17.9 2.7 0.13 12.4 0.1 2.6 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|147918915|ref|YP_687359.1| - 0.0027 17.1 0.0 0.0085 15.4 0.0 1.9 2 0 0 2 2 1 1 Thymidylate kinase AAA_13 PF13166.1 gi|147918915|ref|YP_687359.1| - 0.0029 16.1 3.2 0.36 9.2 0.3 2.2 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|147918915|ref|YP_687359.1| - 0.0045 17.3 0.5 0.011 16.0 0.3 1.6 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|147918915|ref|YP_687359.1| - 0.0063 16.8 0.3 0.011 15.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|147918915|ref|YP_687359.1| - 0.0067 15.9 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_30 PF13604.1 gi|147918915|ref|YP_687359.1| - 0.01 15.4 0.0 0.026 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|147918915|ref|YP_687359.1| - 0.015 15.2 0.0 0.13 12.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|147918915|ref|YP_687359.1| - 0.015 15.1 0.1 0.084 12.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|147918915|ref|YP_687359.1| - 0.015 14.8 0.6 0.11 12.0 0.1 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KAP_NTPase PF07693.9 gi|147918915|ref|YP_687359.1| - 0.018 14.0 0.0 0.042 12.8 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain AAA_5 PF07728.9 gi|147918915|ref|YP_687359.1| - 0.02 14.6 0.0 0.07 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|147918915|ref|YP_687359.1| - 0.023 14.4 0.1 0.053 13.2 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|147918915|ref|YP_687359.1| - 0.026 13.4 0.0 0.047 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|147918915|ref|YP_687359.1| - 0.036 13.2 0.1 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|147918915|ref|YP_687359.1| - 0.046 13.6 0.0 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|147918915|ref|YP_687359.1| - 0.049 13.3 0.0 0.12 12.1 0.0 1.8 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|147918915|ref|YP_687359.1| - 0.05 13.8 0.4 0.37 11.0 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|147918915|ref|YP_687359.1| - 0.052 12.9 0.2 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Rad17 PF03215.10 gi|147918915|ref|YP_687359.1| - 0.052 12.2 0.7 0.094 11.3 0.1 1.6 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|147918915|ref|YP_687359.1| - 0.056 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|147918915|ref|YP_687359.1| - 0.062 12.7 0.2 0.15 11.4 0.0 1.8 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|147918915|ref|YP_687359.1| - 0.083 13.3 0.0 0.22 12.0 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein PPV_E1_C PF00519.12 gi|147918915|ref|YP_687359.1| - 0.1 11.1 0.1 0.15 10.6 0.1 1.1 1 0 0 1 1 1 0 Papillomavirus helicase NACHT PF05729.7 gi|147918915|ref|YP_687359.1| - 0.11 12.1 0.6 0.19 11.3 0.1 1.6 2 0 0 2 2 1 0 NACHT domain N2227 PF07942.7 gi|147918915|ref|YP_687359.1| - 0.14 11.0 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 N2227-like protein Zeta_toxin PF06414.7 gi|147918915|ref|YP_687359.1| - 0.15 11.1 0.0 0.4 9.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|147918915|ref|YP_687359.1| - 0.16 11.5 0.4 0.47 9.9 0.3 1.7 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|147918915|ref|YP_687359.1| - 0.22 11.4 3.6 0.15 12.0 0.6 2.4 2 2 0 2 2 2 0 50S ribosome-binding GTPase FecCD PF01032.13 gi|147918916|ref|YP_687358.1| - 5.8e-99 330.8 38.0 7e-99 330.5 26.3 1.0 1 0 0 1 1 1 1 FecCD transport family ATP-synt_J PF04911.7 gi|147918916|ref|YP_687358.1| - 0.27 10.7 3.1 0.28 10.6 0.0 2.7 3 0 0 3 3 3 0 ATP synthase j chain DUF2164 PF09932.4 gi|147918917|ref|YP_687357.1| - 5.8e-26 90.1 2.2 6.2e-26 90.0 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2164) Acetyltransf_1 PF00583.19 gi|147918918|ref|YP_687356.1| - 3.9e-17 62.0 0.3 5.8e-17 61.5 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147918918|ref|YP_687356.1| - 2e-11 43.8 0.3 2.7e-11 43.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147918918|ref|YP_687356.1| - 2.4e-09 37.3 0.0 2.6e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147918918|ref|YP_687356.1| - 1.1e-06 28.2 0.0 1.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|147918918|ref|YP_687356.1| - 1.1e-05 25.6 0.0 1.2e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|147918918|ref|YP_687356.1| - 0.003 17.5 0.0 0.004 17.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147918918|ref|YP_687356.1| - 0.0049 16.8 0.0 0.0055 16.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147918918|ref|YP_687356.1| - 0.007 16.2 0.0 0.013 15.3 0.0 1.4 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|147918918|ref|YP_687356.1| - 0.04 13.7 0.3 0.067 13.0 0.2 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147918918|ref|YP_687356.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|147918918|ref|YP_687356.1| - 0.16 11.2 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Lipoprotein_18 PF06804.6 gi|147918918|ref|YP_687356.1| - 0.18 10.5 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 NlpB/DapX lipoprotein DUF3650 PF12368.3 gi|147918918|ref|YP_687356.1| - 0.46 10.0 2.6 9.2 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3650) HTH_45 PF14947.1 gi|147918919|ref|YP_687355.1| - 7.2e-10 38.5 0.3 3.7e-09 36.2 0.0 2.0 1 1 1 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|147918919|ref|YP_687355.1| - 1.6e-05 24.5 0.0 4.2e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|147918919|ref|YP_687355.1| - 8.6e-05 22.0 0.0 0.00013 21.5 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|147918919|ref|YP_687355.1| - 0.0013 19.0 0.0 0.0024 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|147918919|ref|YP_687355.1| - 0.0081 15.8 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147918919|ref|YP_687355.1| - 0.027 14.1 0.0 0.1 12.2 0.0 2.0 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|147918919|ref|YP_687355.1| - 0.07 12.5 0.0 0.22 10.9 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rieske PF00355.21 gi|147918920|ref|YP_687354.1| - 7.8e-12 44.6 0.0 1.3e-11 43.8 0.0 1.4 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|147918920|ref|YP_687354.1| - 2.5e-06 27.1 0.0 3.1e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain FeThRed_B PF02943.10 gi|147918921|ref|YP_687353.1| - 9.6e-14 51.0 2.7 1.1e-13 50.8 1.9 1.1 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain Glutaredoxin PF00462.19 gi|147918922|ref|YP_687352.1| - 3.3e-11 43.0 0.1 4.8e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin ArsC PF03960.10 gi|147918922|ref|YP_687352.1| - 4.6e-06 26.6 0.0 0.00053 20.0 0.0 2.0 1 1 1 2 2 2 2 ArsC family DUF1462 PF07315.6 gi|147918922|ref|YP_687352.1| - 0.00069 19.5 0.1 0.00083 19.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1462) GST_N_3 PF13417.1 gi|147918922|ref|YP_687352.1| - 0.00086 19.4 0.0 0.0011 19.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Tox-PL-2 PF15643.1 gi|147918922|ref|YP_687352.1| - 0.036 14.0 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Papain fold toxin 2 Thioredoxin_2 PF13098.1 gi|147918922|ref|YP_687352.1| - 0.076 13.2 0.3 0.1 12.7 0.2 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain DUF393 PF04134.7 gi|147918922|ref|YP_687352.1| - 0.14 13.3 0.0 0.15 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF393 Rieske PF00355.21 gi|147918923|ref|YP_687351.1| - 3.1e-17 61.9 0.0 3.4e-17 61.7 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|147918923|ref|YP_687351.1| - 5e-12 45.4 0.0 5.9e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Gemini_AL3 PF01407.12 gi|147918923|ref|YP_687351.1| - 0.026 13.9 0.1 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Geminivirus AL3 protein GDE_N_bis PF14742.1 gi|147918924|ref|YP_687350.1| - 1.1e-50 171.7 0.0 1.5e-50 171.3 0.0 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|147918924|ref|YP_687350.1| - 3.1e-16 59.0 0.0 8e-16 57.7 0.0 1.6 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase DUF608 PF04685.8 gi|147918924|ref|YP_687350.1| - 0.0068 15.1 0.0 0.027 13.2 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function, DUF608 Glyco_hydro_63 PF03200.11 gi|147918924|ref|YP_687350.1| - 0.061 11.1 0.2 0.13 10.0 0.1 1.5 2 0 0 2 2 2 0 Mannosyl oligosaccharide glucosidase Bac_rhamnosid PF05592.6 gi|147918924|ref|YP_687350.1| - 0.079 11.1 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial alpha-L-rhamnosidase FMN_red PF03358.10 gi|147918925|ref|YP_687349.1| - 2.5e-40 137.4 0.0 3e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147918925|ref|YP_687349.1| - 7.3e-09 35.4 0.0 9.8e-09 35.0 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold HRDC PF00570.18 gi|147918926|ref|YP_687348.1| - 1.3e-11 44.0 0.2 3.8e-11 42.5 0.1 1.9 1 0 0 1 1 1 1 HRDC domain DUF91 PF01939.11 gi|147918926|ref|YP_687348.1| - 7.9e-06 25.1 0.0 1.8e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF91 HATPase_c PF02518.21 gi|147918927|ref|YP_687347.1| - 4.6e-08 32.7 0.0 9.9e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|147918927|ref|YP_687347.1| - 9.4e-08 32.2 0.0 1.7e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|147918927|ref|YP_687347.1| - 3e-07 30.4 0.0 2.6e-05 24.2 0.0 2.8 2 1 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|147918927|ref|YP_687347.1| - 3.6e-05 24.2 0.0 6.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|147918927|ref|YP_687347.1| - 0.00078 19.7 0.0 0.018 15.4 0.0 2.6 1 1 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147918927|ref|YP_687347.1| - 0.0063 16.2 0.0 0.022 14.5 0.0 1.9 1 1 0 1 1 1 1 PAS fold GAF PF01590.21 gi|147918927|ref|YP_687347.1| - 0.015 15.4 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 GAF domain HATPase_c_3 PF13589.1 gi|147918927|ref|YP_687347.1| - 0.077 12.6 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Autoind_bind PF03472.10 gi|147918927|ref|YP_687347.1| - 0.14 11.4 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Autoinducer binding domain Peptidase_M48 PF01435.13 gi|147918928|ref|YP_687346.1| - 1.7e-42 145.5 0.0 2.2e-42 145.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|147918928|ref|YP_687346.1| - 2.5e-08 33.2 0.0 3.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF4436 PF14494.1 gi|147918928|ref|YP_687346.1| - 0.0066 15.7 0.9 0.011 15.0 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4436) ABC2_membrane PF01061.19 gi|147918928|ref|YP_687346.1| - 0.0075 15.4 1.2 0.0075 15.4 0.8 2.1 2 0 0 2 2 2 1 ABC-2 type transporter DUF1469 PF07332.6 gi|147918928|ref|YP_687346.1| - 0.06 13.0 4.6 0.082 12.6 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Peptidase_MA_2 PF13485.1 gi|147918928|ref|YP_687346.1| - 0.084 12.9 0.5 0.16 12.0 0.4 1.6 1 1 0 1 1 1 0 Peptidase MA superfamily SUR7 PF06687.7 gi|147918928|ref|YP_687346.1| - 1 8.8 5.6 0.1 12.1 0.2 1.9 2 0 0 2 2 2 0 SUR7/PalI family MAPEG PF01124.13 gi|147918928|ref|YP_687346.1| - 2.6 7.6 8.1 1.1 8.9 2.4 2.3 2 0 0 2 2 2 0 MAPEG family CorA PF01544.13 gi|147918929|ref|YP_687345.1| - 1.7e-57 194.6 6.5 2.2e-57 194.3 4.5 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein RepB PF07506.6 gi|147918929|ref|YP_687345.1| - 0.016 15.1 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein NAD_binding_1 PF00175.16 gi|147918930|ref|YP_687344.1| - 1.5e-14 54.4 0.0 2.4e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|147918930|ref|YP_687344.1| - 4e-12 45.4 1.6 8.1e-12 44.4 1.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|147918930|ref|YP_687344.1| - 0.00033 20.7 0.0 0.00058 19.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|147918930|ref|YP_687344.1| - 0.013 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Ferric reductase NAD binding domain Fer2_3 PF13085.1 gi|147918930|ref|YP_687344.1| - 0.27 11.0 1.0 0.53 10.1 0.7 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer4_20 PF14691.1 gi|147918931|ref|YP_687343.1| - 1.3e-42 143.8 5.6 2.1e-42 143.2 3.9 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Pyr_redox_2 PF07992.9 gi|147918931|ref|YP_687343.1| - 8.2e-21 74.8 7.7 5.3e-09 36.2 0.3 3.9 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|147918931|ref|YP_687343.1| - 4.1e-17 62.3 7.9 6.7e-11 42.4 0.4 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|147918931|ref|YP_687343.1| - 1e-11 45.3 0.5 0.00013 22.1 0.1 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|147918931|ref|YP_687343.1| - 6.4e-09 35.5 1.3 0.00047 19.7 0.0 2.6 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|147918931|ref|YP_687343.1| - 1.6e-08 34.4 2.2 1.9e-07 30.9 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|147918931|ref|YP_687343.1| - 6.4e-08 32.0 5.8 3e-05 23.3 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|147918931|ref|YP_687343.1| - 1.6e-07 30.5 3.8 9.9e-05 21.3 0.1 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|147918931|ref|YP_687343.1| - 1.9e-07 31.3 0.7 0.0019 18.4 0.1 2.8 3 0 0 3 3 2 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|147918931|ref|YP_687343.1| - 2.1e-07 30.2 0.6 3.3e-06 26.3 0.2 2.3 2 0 0 2 2 2 1 Thi4 family 2-Hacid_dh_C PF02826.14 gi|147918931|ref|YP_687343.1| - 6.2e-07 28.7 0.1 0.016 14.3 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|147918931|ref|YP_687343.1| - 9.2e-07 28.9 0.4 0.0052 16.8 0.1 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain FAD_binding_3 PF01494.14 gi|147918931|ref|YP_687343.1| - 3e-06 26.5 2.6 0.0001 21.4 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|147918931|ref|YP_687343.1| - 4.5e-06 25.7 5.6 3.4e-05 22.8 1.5 2.3 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|147918931|ref|YP_687343.1| - 2e-05 23.2 6.3 9.8e-05 20.9 0.8 2.4 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|147918931|ref|YP_687343.1| - 0.00012 21.1 5.4 0.0013 17.6 1.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase Shikimate_DH PF01488.15 gi|147918931|ref|YP_687343.1| - 0.00022 21.3 0.5 0.88 9.6 0.0 3.0 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.16 gi|147918931|ref|YP_687343.1| - 0.0003 20.4 0.1 0.64 9.5 0.0 2.4 2 0 0 2 2 2 2 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|147918931|ref|YP_687343.1| - 0.00084 19.1 0.4 0.35 10.5 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FMO-like PF00743.14 gi|147918931|ref|YP_687343.1| - 0.0018 16.5 0.0 0.78 7.8 0.0 2.1 1 1 0 2 2 2 2 Flavin-binding monooxygenase-like IlvN PF07991.7 gi|147918931|ref|YP_687343.1| - 0.0027 17.1 0.2 0.56 9.5 0.0 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain XdhC_C PF13478.1 gi|147918931|ref|YP_687343.1| - 0.0027 18.0 0.2 0.046 14.0 0.0 2.7 3 0 0 3 3 2 1 XdhC Rossmann domain F420_oxidored PF03807.12 gi|147918931|ref|YP_687343.1| - 0.004 17.5 2.2 1.3 9.5 0.1 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|147918931|ref|YP_687343.1| - 0.005 16.5 4.4 0.4 10.3 0.1 3.0 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|147918931|ref|YP_687343.1| - 0.006 15.7 2.9 0.12 11.4 0.1 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase YjeF_N PF03853.10 gi|147918931|ref|YP_687343.1| - 0.022 14.3 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus UDPG_MGDP_dh_N PF03721.9 gi|147918931|ref|YP_687343.1| - 0.028 13.7 4.4 0.04 13.2 0.3 2.8 3 1 1 4 4 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Fer4_18 PF13746.1 gi|147918931|ref|YP_687343.1| - 0.033 14.6 0.5 0.033 14.6 0.4 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain TrkA_N PF02254.13 gi|147918931|ref|YP_687343.1| - 0.033 14.1 0.7 11 6.0 0.0 2.7 2 0 0 2 2 2 0 TrkA-N domain OTCace PF00185.19 gi|147918931|ref|YP_687343.1| - 0.048 13.5 0.0 0.15 11.9 0.0 1.8 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DJ-1_PfpI PF01965.19 gi|147918931|ref|YP_687343.1| - 0.078 12.4 0.3 2.9 7.3 0.0 3.0 3 0 0 3 3 3 0 DJ-1/PfpI family NAD_binding_9 PF13454.1 gi|147918931|ref|YP_687343.1| - 0.089 12.5 0.8 0.86 9.3 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|147918931|ref|YP_687343.1| - 0.11 11.4 1.7 0.31 9.9 0.4 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_10 PF13460.1 gi|147918931|ref|YP_687343.1| - 0.32 10.9 7.8 0.93 9.4 0.5 4.0 4 1 0 4 4 3 0 NADH(P)-binding Fer4_8 PF13183.1 gi|147918931|ref|YP_687343.1| - 0.34 10.9 5.8 0.89 9.6 4.0 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147918931|ref|YP_687343.1| - 4.4 7.7 7.8 0.28 11.5 0.3 2.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain C-C_Bond_Lyase PF15617.1 gi|147918933|ref|YP_687341.1| - 0.052 12.3 0.0 0.07 11.9 0.0 1.1 1 0 0 1 1 1 0 C-C_Bond_Lyase of the TIM-Barrel fold PQQ_2 PF13360.1 gi|147918935|ref|YP_687339.1| - 2.2e-13 50.2 1.3 1.3e-06 28.0 0.1 3.1 1 1 2 3 3 3 3 PQQ-like domain WD40 PF00400.27 gi|147918935|ref|YP_687339.1| - 4.1e-11 42.3 4.2 0.43 10.5 0.0 6.5 6 0 0 6 6 6 4 WD domain, G-beta repeat PQQ_3 PF13570.1 gi|147918935|ref|YP_687339.1| - 1.4e-08 34.7 10.9 0.3 11.4 0.0 6.7 8 0 0 8 8 8 4 PQQ-like domain DZR PF12773.2 gi|147918935|ref|YP_687339.1| - 0.023 14.5 0.7 0.043 13.6 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon SGL PF08450.7 gi|147918935|ref|YP_687339.1| - 0.062 12.6 0.2 3.2 7.0 0.0 3.0 1 1 2 3 3 3 0 SMP-30/Gluconolaconase/LRE-like region zinc_ribbon_2 PF13240.1 gi|147918935|ref|YP_687339.1| - 0.094 12.2 1.5 0.22 11.0 1.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF4221 PF13970.1 gi|147918935|ref|YP_687339.1| - 0.13 11.5 0.1 1 8.6 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4221) zf-ribbon_3 PF13248.1 gi|147918935|ref|YP_687339.1| - 0.26 10.5 2.5 0.49 9.6 1.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF190 PF02641.10 gi|147918936|ref|YP_687338.1| - 8.1e-26 89.8 0.0 8.9e-26 89.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.10 gi|147918937|ref|YP_687337.1| - 5.9e-27 93.8 6.7 6.7e-27 93.7 4.7 1.0 1 0 0 1 1 1 1 CrcB-like protein CRCB PF02537.10 gi|147918938|ref|YP_687336.1| - 3.4e-22 78.5 13.0 4e-22 78.3 9.0 1.0 1 0 0 1 1 1 1 CrcB-like protein DUF3815 PF12821.2 gi|147918938|ref|YP_687336.1| - 0.37 10.7 9.9 0.077 12.9 2.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3815) Lysis_S PF04971.7 gi|147918938|ref|YP_687336.1| - 0.93 9.2 5.7 1.4 8.6 0.3 2.4 2 1 0 2 2 2 0 Lysis protein S tRNA-synt_2d PF01409.15 gi|147918939|ref|YP_687335.1| - 2.6e-53 180.7 0.2 2.2e-48 164.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|147918939|ref|YP_687335.1| - 0.0022 17.6 0.0 0.0071 15.9 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DnaB_2 PF07261.6 gi|147918939|ref|YP_687335.1| - 0.079 12.5 0.1 0.24 11.0 0.1 1.8 1 0 0 1 1 1 0 Replication initiation and membrane attachment PSD2 PF07624.6 gi|147918939|ref|YP_687335.1| - 0.082 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1585) SnoaL_2 PF12680.2 gi|147918939|ref|YP_687335.1| - 0.13 12.6 0.1 0.53 10.7 0.0 2.1 2 0 0 2 2 2 0 SnoaL-like domain Endonuclease_5 PF04493.9 gi|147918940|ref|YP_687334.1| - 5.2e-50 169.6 0.0 7.2e-50 169.2 0.0 1.2 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|147918940|ref|YP_687334.1| - 2.7e-05 23.3 0.0 7.6e-05 21.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF99 Myco_19_kDa PF05481.7 gi|147918941|ref|YP_687333.1| - 0.039 13.7 7.9 0.18 11.6 3.4 2.3 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen DUF2141 PF09912.4 gi|147918941|ref|YP_687333.1| - 0.057 13.0 0.1 0.15 11.7 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2141) bPH_2 PF03703.9 gi|147918942|ref|YP_687332.1| - 4.1e-49 164.5 7.1 2.3e-18 65.9 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|147918942|ref|YP_687332.1| - 5.7e-05 22.9 0.5 0.5 10.2 0.0 3.3 3 0 0 3 3 3 2 Bacterial PH domain bPH_5 PF10882.3 gi|147918942|ref|YP_687332.1| - 0.00051 19.7 0.4 1.8 8.3 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain Arc_PepC PF06819.6 gi|147918942|ref|YP_687332.1| - 0.07 13.0 0.0 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminal Domain bPH_3 PF14470.1 gi|147918942|ref|YP_687332.1| - 0.092 13.0 0.0 6.8 7.0 0.0 2.7 3 0 0 3 3 3 0 Bacterial PH domain Cornichon PF03311.9 gi|147918942|ref|YP_687332.1| - 0.094 12.8 0.0 0.094 12.8 0.0 2.5 3 0 0 3 3 3 0 Cornichon protein bPH_2 PF03703.9 gi|147918943|ref|YP_687331.1| - 2e-18 66.1 0.0 2.9e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain BenE PF03594.8 gi|147918943|ref|YP_687331.1| - 0.0063 15.1 0.7 0.023 13.2 0.0 1.8 2 0 0 2 2 2 1 Benzoate membrane transport protein DUF1129 PF06570.6 gi|147918943|ref|YP_687331.1| - 0.079 12.2 1.3 0.13 11.6 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Aconitase_C PF00694.14 gi|147918944|ref|YP_687330.1| - 2.1e-17 63.4 0.0 3.1e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|147918945|ref|YP_687329.1| - 5e-77 259.3 1.7 3.4e-52 177.4 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|147918945|ref|YP_687329.1| - 0.00012 20.7 0.0 0.00018 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) GXGXG PF01493.14 gi|147918946|ref|YP_687328.1| - 6.5e-34 116.7 20.6 1.1e-33 115.9 14.3 1.4 1 1 0 1 1 1 1 GXGXG motif Gp5_C PF06715.7 gi|147918946|ref|YP_687328.1| - 1.6 8.7 4.4 3.6 7.6 0.8 3.2 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) Amidohydro_3 PF07969.6 gi|147918947|ref|YP_687327.1| - 7.1e-63 213.2 0.4 8.4e-63 212.9 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|147918947|ref|YP_687327.1| - 5.2e-12 45.4 0.1 5.2e-12 45.4 0.1 3.0 4 0 0 4 4 4 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|147918947|ref|YP_687327.1| - 3.6e-09 36.7 0.0 5.7e-08 32.7 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|147918947|ref|YP_687327.1| - 7e-09 36.1 0.6 0.0004 20.5 0.1 2.4 2 0 0 2 2 2 2 Amidohydrolase Molybdopterin PF00384.17 gi|147918948|ref|YP_687326.1| - 3.8e-10 39.1 0.0 3.6e-09 35.8 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|147918948|ref|YP_687326.1| - 0.026 14.2 0.0 0.57 9.9 0.0 2.7 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain zf-ribbon_3 PF13248.1 gi|147918948|ref|YP_687326.1| - 0.074 12.2 0.9 1.3 8.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Molydop_binding PF01568.16 gi|147918949|ref|YP_687325.1| - 3e-14 52.7 0.0 3.8e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.11 gi|147918950|ref|YP_687324.1| - 1.3e-52 176.6 0.1 1.8e-52 176.2 0.1 1.2 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|147918951|ref|YP_687323.1| - 6.7e-16 57.1 43.1 1e-05 24.9 3.0 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147918951|ref|YP_687323.1| - 5.5e-15 54.9 25.0 7.9e-08 32.0 5.2 4.1 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147918951|ref|YP_687323.1| - 2e-11 44.1 36.7 1.9e-07 31.3 7.6 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|147918951|ref|YP_687323.1| - 4.5e-10 39.7 0.4 7.4e-09 35.7 0.3 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.1 gi|147918951|ref|YP_687323.1| - 4e-09 36.1 33.2 0.00047 19.9 8.5 4.8 4 1 1 5 5 4 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147918951|ref|YP_687323.1| - 1.2e-08 34.3 43.6 9.3e-05 22.1 3.0 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147918951|ref|YP_687323.1| - 4.1e-08 33.8 25.3 0.032 14.9 0.5 4.9 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|147918951|ref|YP_687323.1| - 1e-07 32.0 42.8 1.6e-07 31.4 7.2 4.1 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147918951|ref|YP_687323.1| - 2.7e-07 30.5 31.8 7.9e-05 22.6 6.3 4.1 3 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147918951|ref|YP_687323.1| - 5.9e-06 26.5 32.6 0.00016 21.9 5.2 4.5 3 1 2 5 5 5 2 4Fe-4S dicluster domain GIDA PF01134.17 gi|147918951|ref|YP_687323.1| - 6.1e-05 22.0 0.0 0.00013 20.9 0.0 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.19 gi|147918951|ref|YP_687323.1| - 0.00014 20.9 0.0 0.056 12.3 0.1 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|147918951|ref|YP_687323.1| - 0.00016 20.9 0.0 0.00016 20.9 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|147918951|ref|YP_687323.1| - 0.00018 21.4 0.0 0.00051 20.0 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_15 PF13459.1 gi|147918951|ref|YP_687323.1| - 0.00021 21.7 24.0 0.44 11.1 0.5 4.9 4 0 0 4 4 4 3 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|147918951|ref|YP_687323.1| - 0.0013 18.5 49.8 0.01 15.7 3.4 5.2 6 0 0 6 6 4 4 4Fe-4S binding domain FAD_binding_2 PF00890.19 gi|147918951|ref|YP_687323.1| - 0.0025 16.7 0.2 0.004 16.0 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|147918951|ref|YP_687323.1| - 0.009 16.0 0.1 0.026 14.5 0.0 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.1 gi|147918951|ref|YP_687323.1| - 0.013 15.9 36.3 0.4 11.1 1.1 5.2 5 1 0 5 5 4 0 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|147918951|ref|YP_687323.1| - 0.024 15.0 0.0 0.059 13.7 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|147918951|ref|YP_687323.1| - 0.071 12.2 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.14 gi|147918951|ref|YP_687323.1| - 0.13 11.3 0.4 0.22 10.5 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain CCG PF02754.11 gi|147918952|ref|YP_687322.1| - 3e-33 113.6 2.7 4.1e-20 71.5 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|147918953|ref|YP_685327.1| - 1.2e-10 41.2 8.3 1.8e-10 40.7 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147918953|ref|YP_685327.1| - 1.6e-10 41.1 8.7 2.6e-10 40.5 6.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147918953|ref|YP_685327.1| - 3.1e-06 27.3 8.7 1.1e-05 25.6 6.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147918953|ref|YP_685327.1| - 2.1e-05 24.2 7.6 3.8e-05 23.3 5.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147918953|ref|YP_685327.1| - 2.4e-05 24.9 1.7 0.11 13.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|147918953|ref|YP_685327.1| - 0.003 17.9 10.5 0.0086 16.4 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147918953|ref|YP_685327.1| - 0.0052 17.1 13.0 0.23 11.9 2.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147918953|ref|YP_685327.1| - 0.0068 16.2 5.7 0.015 15.1 3.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147918953|ref|YP_685327.1| - 0.12 12.3 12.5 1.4 9.0 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147918953|ref|YP_685327.1| - 0.27 11.6 12.1 3.1 8.3 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|147918953|ref|YP_685327.1| - 0.36 10.5 14.2 2.1 8.0 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|147918953|ref|YP_685327.1| - 1.4 8.6 6.7 2.5 7.7 0.4 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|147918953|ref|YP_685327.1| - 1.8 8.5 11.6 0.51 10.3 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|147918954|ref|YP_685326.1| - 1.6e-41 138.2 86.0 2e-08 33.4 2.9 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147918954|ref|YP_685326.1| - 5.2e-35 119.5 66.4 1.6e-11 44.3 6.8 5.4 3 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147918954|ref|YP_685326.1| - 6.3e-29 99.5 69.5 1.9e-08 33.9 5.1 5.8 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147918954|ref|YP_685326.1| - 1.5e-26 92.0 64.2 2e-06 27.5 6.8 6.2 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147918954|ref|YP_685326.1| - 5e-26 89.4 88.0 7.6e-06 25.5 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147918954|ref|YP_685326.1| - 3.5e-25 88.5 70.7 5.8e-08 33.3 5.9 6.5 4 2 2 6 6 6 5 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|147918954|ref|YP_685326.1| - 1.6e-24 84.3 77.9 5.6e-06 25.9 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147918954|ref|YP_685326.1| - 1.6e-23 82.6 73.0 1.2e-07 31.8 6.5 6.2 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147918954|ref|YP_685326.1| - 5.4e-18 64.7 63.5 2.1e-05 24.4 6.1 5.8 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147918954|ref|YP_685326.1| - 1.6e-13 50.9 56.3 0.0049 17.4 1.3 8.2 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|147918954|ref|YP_685326.1| - 5.3e-13 49.1 59.7 0.00038 20.7 5.0 7.0 3 1 5 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147918954|ref|YP_685326.1| - 1.5e-09 37.4 80.8 9.3e-05 22.4 1.5 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147918954|ref|YP_685326.1| - 2.8e-07 30.6 100.1 0.11 13.1 3.0 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147918954|ref|YP_685326.1| - 2.2e-06 27.9 73.4 0.0026 18.1 0.2 8.2 5 2 3 8 8 8 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147918954|ref|YP_685326.1| - 8.1e-06 26.1 77.2 0.068 13.5 0.3 8.2 8 0 0 8 8 7 7 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|147918954|ref|YP_685326.1| - 0.0045 16.8 48.7 0.11 12.4 10.5 5.6 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147918955|ref|YP_687319.1| - 3e-15 55.0 16.4 3.4e-08 32.7 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147918955|ref|YP_687319.1| - 1.4e-12 48.1 18.2 1.8e-09 38.1 6.3 1.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|147918955|ref|YP_687319.1| - 1.6e-12 47.5 10.3 2.3e-12 47.0 7.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147918955|ref|YP_687319.1| - 8.1e-12 44.3 14.5 6.6e-06 25.7 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147918955|ref|YP_687319.1| - 1.7e-11 43.7 7.1 2e-05 24.2 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147918955|ref|YP_687319.1| - 4.8e-11 42.0 15.5 5.3e-06 26.0 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147918955|ref|YP_687319.1| - 2.2e-10 40.2 12.1 7.5e-10 38.5 8.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147918955|ref|YP_687319.1| - 2.3e-10 40.5 10.1 3.5e-10 40.0 7.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147918955|ref|YP_687319.1| - 1.7e-07 31.0 12.2 0.00083 19.4 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147918955|ref|YP_687319.1| - 8.2e-07 29.1 21.3 0.0019 18.6 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147918955|ref|YP_687319.1| - 1.3e-06 28.7 10.5 0.0054 17.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147918955|ref|YP_687319.1| - 4.4e-06 26.6 26.2 6e-05 22.9 9.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147918955|ref|YP_687319.1| - 4.5e-06 27.1 9.0 0.0093 16.5 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|147918955|ref|YP_687319.1| - 4.3e-05 23.7 11.4 0.00058 20.1 8.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147918955|ref|YP_687319.1| - 0.00052 19.8 4.6 0.057 13.3 3.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147918955|ref|YP_687319.1| - 0.012 16.0 13.5 0.31 11.4 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF164 PF02591.10 gi|147918955|ref|YP_687319.1| - 0.057 13.2 5.5 2.4 8.0 0.4 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain PLDc PF00614.17 gi|147918955|ref|YP_687319.1| - 0.096 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Phospholipase D Active site motif FrhB_FdhB_C PF04432.8 gi|147918956|ref|YP_687318.1| - 1e-41 142.0 0.6 2e-41 141.0 0.4 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147918956|ref|YP_687318.1| - 7.7e-23 80.1 0.1 1.7e-22 79.0 0.1 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|147918956|ref|YP_687318.1| - 6.6e-08 32.4 17.7 8.4e-08 32.1 10.8 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147918956|ref|YP_687318.1| - 3.2e-07 29.6 17.8 0.0001 21.7 1.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147918956|ref|YP_687318.1| - 2.2e-05 24.6 16.2 2.2e-05 24.6 11.2 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147918956|ref|YP_687318.1| - 2.6e-05 23.9 19.3 0.00017 21.3 0.1 3.5 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147918956|ref|YP_687318.1| - 8.1e-05 22.9 18.6 0.0025 18.2 5.1 2.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147918956|ref|YP_687318.1| - 0.00014 22.1 15.6 0.00014 22.1 10.8 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147918956|ref|YP_687318.1| - 0.00034 20.3 22.3 0.0038 17.0 1.0 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147918956|ref|YP_687318.1| - 0.0024 18.0 21.4 0.0051 17.0 12.6 3.0 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147918956|ref|YP_687318.1| - 0.0098 16.4 8.7 0.3 11.6 0.4 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|147918956|ref|YP_687318.1| - 0.015 15.6 3.6 0.015 15.6 2.5 3.9 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147918956|ref|YP_687318.1| - 0.023 15.2 3.5 0.023 15.2 2.4 3.8 4 1 0 4 4 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|147918956|ref|YP_687318.1| - 0.028 14.8 14.3 0.081 13.3 1.2 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|147918956|ref|YP_687318.1| - 0.03 14.2 2.7 0.03 14.2 1.9 3.5 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147918956|ref|YP_687318.1| - 0.59 10.0 23.2 19 5.2 13.8 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147918956|ref|YP_687318.1| - 1.6 9.4 17.5 0.77 10.5 0.5 3.5 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.17 gi|147918957|ref|YP_687317.1| - 1.4e-94 317.2 0.1 1.7e-94 317.0 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|147918957|ref|YP_687317.1| - 7.1e-33 112.7 0.0 1.5e-32 111.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|147918957|ref|YP_687317.1| - 9.8e-21 73.3 0.6 9.8e-21 73.3 0.4 1.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain DUF4358 PF14270.1 gi|147918957|ref|YP_687317.1| - 0.031 14.1 0.1 0.083 12.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) Peptidase_M29 PF02073.10 gi|147918958|ref|YP_687316.1| - 1.6e-19 69.9 0.1 1.2e-17 63.8 0.1 2.6 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) PQQ_2 PF13360.1 gi|147918959|ref|YP_687315.1| - 2.6e-18 66.3 16.1 1.2e-10 41.3 2.2 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|147918959|ref|YP_687315.1| - 2.7e-17 62.4 33.5 0.014 15.6 0.3 8.3 7 1 1 8 8 8 6 PQQ-like domain WD40 PF00400.27 gi|147918959|ref|YP_687315.1| - 2.5e-10 39.8 4.5 0.018 14.9 0.0 5.8 6 0 0 6 6 6 3 WD domain, G-beta repeat PQQ PF01011.16 gi|147918959|ref|YP_687315.1| - 2.5e-09 36.2 12.0 0.022 14.2 0.0 7.0 6 1 2 8 8 8 3 PQQ enzyme repeat SGL PF08450.7 gi|147918959|ref|YP_687315.1| - 0.0035 16.7 1.6 2.2 7.5 0.0 3.8 2 1 1 4 4 4 1 SMP-30/Gluconolaconase/LRE-like region BBS2_Mid PF14783.1 gi|147918959|ref|YP_687315.1| - 0.0036 17.0 0.4 0.2 11.4 0.0 3.2 2 1 1 3 3 3 1 Ciliary BBSome complex subunit 2, middle region RAB3GAP2_N PF14655.1 gi|147918959|ref|YP_687315.1| - 0.015 14.2 0.7 0.18 10.7 0.0 2.7 2 1 1 3 3 3 0 Rab3 GTPase-activating protein regulatory subunit N-terminus DUF1513 PF07433.6 gi|147918959|ref|YP_687315.1| - 0.036 12.9 2.2 2.6 6.8 0.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1513) CPSF_A PF03178.10 gi|147918959|ref|YP_687315.1| - 0.046 12.7 0.0 0.08 12.0 0.0 1.4 1 0 0 1 1 1 0 CPSF A subunit region MORN_2 PF07661.8 gi|147918959|ref|YP_687315.1| - 0.11 12.5 0.0 1.4 9.1 0.0 2.6 2 0 0 2 2 2 0 MORN repeat variant Saccharop_dh_N PF04455.7 gi|147918960|ref|YP_687314.1| - 3e-40 136.5 0.1 5.7e-40 135.6 0.1 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|147918960|ref|YP_687314.1| - 0.049 13.3 0.2 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain AA_kinase PF00696.23 gi|147918960|ref|YP_687314.1| - 0.071 12.6 0.2 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Amino acid kinase family Aldo_ket_red PF00248.16 gi|147918961|ref|YP_687313.1| - 9.9e-25 86.9 0.0 1.8e-23 82.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Imm-NTF2-2 PF15631.1 gi|147918962|ref|YP_687312.1| - 0.00012 21.9 0.4 0.004 17.0 0.0 2.9 3 0 0 3 3 3 1 NTF2 fold immunity protein DDE_Tnp_1 PF01609.16 gi|147918963|ref|YP_685375.1| - 1.6e-16 60.4 0.1 2.5e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147918963|ref|YP_685375.1| - 7e-13 48.2 0.1 2e-12 46.8 0.1 1.8 1 1 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147918963|ref|YP_685375.1| - 3.8e-05 23.4 0.0 7.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147918963|ref|YP_685375.1| - 0.022 14.7 0.5 0.043 13.8 0.3 1.5 1 0 0 1 1 1 0 Transposase DDE domain Bac_luciferase PF00296.15 gi|147918964|ref|YP_687310.1| - 9.2e-66 222.0 0.0 1.1e-65 221.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PMSR PF01625.16 gi|147918965|ref|YP_687309.1| - 7.6e-66 220.8 0.3 8.5e-66 220.6 0.2 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase MazG PF03819.12 gi|147918966|ref|YP_687308.1| - 9.7e-06 25.4 0.8 2e-05 24.4 0.6 1.6 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|147918966|ref|YP_687308.1| - 0.07 13.4 0.7 0.094 13.0 0.5 1.4 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase CarboxypepD_reg PF13620.1 gi|147918967|ref|YP_687307.1| - 2.2e-12 46.8 2.4 4.3e-12 45.9 1.6 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147918967|ref|YP_687307.1| - 7.3e-05 22.7 0.1 0.00014 21.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|147918967|ref|YP_687307.1| - 7.6e-05 22.5 2.3 9.5e-05 22.2 0.1 2.2 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.16 gi|147918967|ref|YP_687307.1| - 0.00083 18.6 0.0 0.0018 17.5 0.0 1.6 1 1 0 1 1 1 1 Dioxygenase DUF3584 PF12128.3 gi|147918968|ref|YP_687306.1| - 0.048 10.9 0.7 0.061 10.6 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BBP1_C PF15272.1 gi|147918968|ref|YP_687306.1| - 0.05 13.1 0.1 0.079 12.4 0.1 1.3 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal DUF2201_N PF13203.1 gi|147918968|ref|YP_687306.1| - 0.11 11.6 3.3 0.9 8.6 0.1 2.1 2 0 0 2 2 2 0 Putative metallopeptidase domain DUF2408 PF10303.4 gi|147918968|ref|YP_687306.1| - 0.11 12.5 0.2 0.19 11.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) DUF2115 PF09888.4 gi|147918969|ref|YP_687305.1| - 7.5e-58 195.2 0.0 8.7e-58 195.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) HTH_24 PF13412.1 gi|147918970|ref|YP_687304.1| - 5.3e-15 54.5 0.0 1.1e-14 53.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|147918970|ref|YP_687304.1| - 5.6e-13 48.1 0.0 1.1e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|147918970|ref|YP_687304.1| - 6.9e-06 25.6 0.1 1.4e-05 24.6 0.0 1.5 2 0 0 2 2 1 1 AsnC family HTH_11 PF08279.7 gi|147918970|ref|YP_687304.1| - 0.0001 21.8 0.1 0.0003 20.3 0.0 1.9 2 1 0 2 2 1 1 HTH domain MarR_2 PF12802.2 gi|147918970|ref|YP_687304.1| - 0.00025 20.6 0.0 0.00041 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147918970|ref|YP_687304.1| - 0.00033 20.2 0.0 0.00063 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|147918970|ref|YP_687304.1| - 0.00078 19.0 0.0 0.0023 17.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|147918970|ref|YP_687304.1| - 0.0028 17.4 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|147918970|ref|YP_687304.1| - 0.0029 16.9 0.0 0.0046 16.2 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.15 gi|147918970|ref|YP_687304.1| - 0.0052 16.8 0.1 0.011 15.8 0.0 1.5 2 0 0 2 2 1 1 Transcriptional regulator HTH_39 PF14090.1 gi|147918970|ref|YP_687304.1| - 0.0053 16.1 0.0 0.33 10.4 0.0 2.8 3 1 1 4 4 4 1 Helix-turn-helix domain TrmB PF01978.14 gi|147918970|ref|YP_687304.1| - 0.007 16.0 0.1 0.17 11.6 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|147918970|ref|YP_687304.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|147918970|ref|YP_687304.1| - 0.022 14.4 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.2 gi|147918970|ref|YP_687304.1| - 0.031 14.0 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|147918970|ref|YP_687304.1| - 0.034 14.1 0.0 0.079 13.0 0.0 1.6 2 0 0 2 2 1 0 Transposase Fe_dep_repress PF01325.14 gi|147918970|ref|YP_687304.1| - 0.039 13.9 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|147918970|ref|YP_687304.1| - 0.045 12.9 0.0 0.26 10.4 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|147918970|ref|YP_687304.1| - 0.053 13.1 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_34 PF13601.1 gi|147918970|ref|YP_687304.1| - 0.055 13.5 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|147918970|ref|YP_687304.1| - 0.07 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain C1_1 PF00130.17 gi|147918970|ref|YP_687304.1| - 0.12 12.1 3.9 0.2 11.3 2.7 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HTH_3 PF01381.17 gi|147918970|ref|YP_687304.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4_2 PF08281.7 gi|147918970|ref|YP_687304.1| - 0.15 11.5 0.0 0.37 10.3 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Pyr_redox_2 PF07992.9 gi|147918971|ref|YP_687303.1| - 2.1e-35 122.4 2.3 2.9e-35 121.9 1.6 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|147918971|ref|YP_687303.1| - 1.9e-16 60.7 3.7 3.6e-10 40.2 0.0 3.0 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|147918971|ref|YP_687303.1| - 2.2e-08 33.4 7.0 0.0005 19.0 0.8 2.6 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|147918971|ref|YP_687303.1| - 6.4e-07 28.7 1.4 1.5e-05 24.2 0.1 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|147918971|ref|YP_687303.1| - 1.1e-06 27.3 1.1 0.00075 18.0 0.3 2.7 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|147918971|ref|YP_687303.1| - 1.3e-06 27.5 5.4 4.6e-05 22.4 1.1 2.7 1 1 2 3 3 3 2 FAD binding domain Pyr_redox PF00070.22 gi|147918971|ref|YP_687303.1| - 2e-06 28.0 4.3 0.00096 19.5 0.2 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|147918971|ref|YP_687303.1| - 3.4e-05 23.7 0.5 7.6e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|147918971|ref|YP_687303.1| - 7.2e-05 21.9 4.5 0.00026 20.1 0.1 2.9 2 1 1 3 3 3 1 Thi4 family GIDA PF01134.17 gi|147918971|ref|YP_687303.1| - 7.8e-05 21.7 9.3 0.00017 20.6 0.7 3.3 3 1 1 4 4 4 2 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|147918971|ref|YP_687303.1| - 0.00036 19.5 0.2 0.099 11.5 0.3 3.0 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|147918971|ref|YP_687303.1| - 0.00097 19.3 1.0 1 9.6 0.2 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|147918971|ref|YP_687303.1| - 0.011 15.5 0.8 2.1 8.0 0.0 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|147918971|ref|YP_687303.1| - 0.022 13.6 0.3 1.7 7.4 0.0 2.5 2 1 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.14 gi|147918971|ref|YP_687303.1| - 0.042 12.8 1.5 0.075 12.0 0.2 1.9 2 0 0 2 2 2 0 FAD binding domain Glutaredoxin PF00462.19 gi|147918972|ref|YP_687302.1| - 4.6e-15 55.3 0.4 5.4e-15 55.1 0.3 1.1 1 0 0 1 1 1 1 Glutaredoxin ArsC PF03960.10 gi|147918972|ref|YP_687302.1| - 1.3e-07 31.6 0.3 3.6e-05 23.8 0.0 2.0 2 0 0 2 2 2 2 ArsC family DUF836 PF05768.9 gi|147918972|ref|YP_687302.1| - 1.1e-05 25.6 0.1 1.1e-05 25.5 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.1 gi|147918972|ref|YP_687302.1| - 1.8e-05 24.4 0.4 2.3e-05 24.1 0.2 1.2 1 0 0 1 1 1 1 Thioredoxin domain GST_N_3 PF13417.1 gi|147918972|ref|YP_687302.1| - 0.00014 21.9 0.0 0.00017 21.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|147918972|ref|YP_687302.1| - 0.0076 16.4 0.2 0.019 15.1 0.1 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain ArsD PF06953.6 gi|147918972|ref|YP_687302.1| - 0.017 15.3 0.2 0.15 12.2 0.1 2.1 1 1 1 2 2 2 0 Arsenical resistance operon trans-acting repressor ArsD SH3BGR PF04908.10 gi|147918972|ref|YP_687302.1| - 0.023 14.6 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 SH3-binding, glutamic acid-rich protein Transketolase_C PF02780.15 gi|147918972|ref|YP_687302.1| - 0.093 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Transketolase, C-terminal domain AFOR_C PF01314.13 gi|147918973|ref|YP_687301.1| - 1.3e-129 432.1 0.1 1.7e-129 431.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|147918973|ref|YP_687301.1| - 3.9e-83 277.7 0.0 7.2e-83 276.8 0.0 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fer4 PF00037.22 gi|147918974|ref|YP_687300.1| - 6.4e-21 73.0 30.6 2e-10 39.8 1.2 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147918974|ref|YP_687300.1| - 3.4e-20 72.1 22.4 7.1e-15 55.1 5.7 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147918974|ref|YP_687300.1| - 1.5e-18 65.7 31.8 7e-08 32.0 1.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147918974|ref|YP_687300.1| - 5.7e-18 64.4 23.1 4.5e-08 32.7 6.3 3.2 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147918974|ref|YP_687300.1| - 5.9e-17 61.6 37.7 1.3e-10 41.3 7.9 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147918974|ref|YP_687300.1| - 8.8e-15 54.4 47.3 7.2e-10 38.7 6.0 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147918974|ref|YP_687300.1| - 9e-15 54.2 34.4 2.7e-10 39.9 5.3 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147918974|ref|YP_687300.1| - 1.1e-13 50.1 31.1 1.7e-06 27.6 1.8 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147918974|ref|YP_687300.1| - 4.2e-13 48.4 37.6 0.00044 20.3 2.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|147918974|ref|YP_687300.1| - 1.4e-10 40.9 8.8 1.4e-10 40.9 6.1 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147918974|ref|YP_687300.1| - 2.4e-10 40.1 45.8 0.0032 17.9 5.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147918974|ref|YP_687300.1| - 1.5e-09 38.4 27.0 7.2e-08 33.0 7.3 4.0 2 1 2 4 4 4 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|147918974|ref|YP_687300.1| - 2.6e-09 37.3 32.5 3.1e-05 24.3 0.4 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147918974|ref|YP_687300.1| - 5.2e-08 33.1 28.0 0.00022 21.4 6.7 3.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147918974|ref|YP_687300.1| - 2.4e-05 24.7 22.1 0.00038 20.9 0.8 4.1 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147918974|ref|YP_687300.1| - 0.036 14.4 2.2 0.036 14.4 1.5 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain TPR_12 PF13424.1 gi|147918975|ref|YP_687299.1| - 1.2e-11 44.3 1.9 8.6e-10 38.4 0.4 2.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|147918975|ref|YP_687299.1| - 1e-06 28.4 3.9 0.0072 16.2 0.2 3.9 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147918975|ref|YP_687299.1| - 3.3e-06 26.6 2.4 8.2e-05 22.1 0.4 2.6 2 0 0 2 2 2 1 TPR repeat TPR_2 PF07719.12 gi|147918975|ref|YP_687299.1| - 6e-06 25.7 5.3 0.026 14.4 0.2 3.8 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147918975|ref|YP_687299.1| - 0.00025 20.6 2.0 0.14 12.0 0.1 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147918975|ref|YP_687299.1| - 0.0049 16.4 3.6 0.24 11.0 0.1 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147918975|ref|YP_687299.1| - 0.037 14.3 0.3 0.34 11.2 0.1 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147918975|ref|YP_687299.1| - 0.085 13.5 1.7 5.1 7.8 0.3 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat DNA_ligase_A_M PF01068.16 gi|147918976|ref|YP_687298.1| - 2.3e-52 177.3 0.4 4.6e-52 176.3 0.0 1.7 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|147918976|ref|YP_687298.1| - 5.7e-44 150.0 1.4 2.6e-43 147.8 0.1 2.4 2 1 1 3 3 3 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|147918976|ref|YP_687298.1| - 1.1e-18 67.3 0.0 1.2e-17 64.1 0.0 2.4 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|147918976|ref|YP_687298.1| - 0.0089 15.6 0.0 0.037 13.7 0.0 2.0 1 1 0 1 1 1 1 DNA ligase OB-like domain YfbU PF03887.9 gi|147918976|ref|YP_687298.1| - 0.073 12.6 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 YfbU domain B5 PF03484.10 gi|147918978|ref|YP_687295.1| - 4.7e-25 87.2 0.6 1.7e-19 69.4 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|147918978|ref|YP_687295.1| - 6.3e-16 58.3 0.0 1.1e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|147918978|ref|YP_687295.1| - 3.7e-05 23.0 0.0 0.0001 21.6 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) LPP20 PF02169.11 gi|147918981|ref|YP_687292.1| - 0.17 11.9 20.4 6.2 6.9 9.1 3.7 1 1 1 2 2 2 0 LPP20 lipoprotein IncA PF04156.9 gi|147918981|ref|YP_687292.1| - 4.1 6.9 5.9 3.5e+02 0.6 4.1 2.9 1 1 0 1 1 1 0 IncA protein Phage_integrase PF00589.17 gi|147918982|ref|YP_687291.1| - 1.2e-22 80.3 0.0 1.8e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family zf-ribbon_3 PF13248.1 gi|147918982|ref|YP_687291.1| - 0.023 13.8 1.5 0.041 13.0 1.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147918982|ref|YP_687291.1| - 0.024 14.1 0.5 0.074 12.5 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|147918982|ref|YP_687291.1| - 0.031 14.1 0.3 0.064 13.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon tRNA-synt_2d PF01409.15 gi|147918983|ref|YP_687290.1| - 1.8e-83 279.5 0.0 2.4e-83 279.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|147918983|ref|YP_687290.1| - 0.00029 20.4 0.1 0.0066 16.0 0.0 2.9 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.15 gi|147918983|ref|YP_687290.1| - 0.00047 19.0 1.0 0.012 14.3 0.0 3.0 3 1 0 4 4 4 1 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|147918983|ref|YP_687290.1| - 0.0016 18.1 0.1 0.23 11.3 0.0 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|147918983|ref|YP_687290.1| - 0.015 14.9 1.8 0.065 12.9 0.2 2.6 2 0 0 2 2 2 0 MarR family tRNA-synt_1b PF00579.20 gi|147918984|ref|YP_687289.1| - 6.5e-27 94.4 0.0 4.5e-26 91.6 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|147918984|ref|YP_687289.1| - 0.0029 16.3 0.0 0.12 11.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) Acetyltransf_1 PF00583.19 gi|147918985|ref|YP_687288.1| - 2.7e-10 40.1 0.0 3.8e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147918985|ref|YP_687288.1| - 1.3e-09 38.1 0.0 1.6e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147918985|ref|YP_687288.1| - 1.8e-07 31.2 0.0 2.3e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147918985|ref|YP_687288.1| - 0.00015 21.6 0.0 0.00045 20.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147918985|ref|YP_687288.1| - 0.0047 16.6 0.0 0.01 15.5 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein DUF2156 PF09924.4 gi|147918986|ref|YP_687287.1| - 2.2e-51 174.4 0.0 2.5e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2156) tRNA_int_endo PF01974.12 gi|147918987|ref|YP_687286.1| - 2.5e-46 155.4 2.2 3.7e-22 77.9 0.0 2.3 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|147918987|ref|YP_687286.1| - 1.8e-43 145.9 0.4 7e-22 76.7 0.0 2.6 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.5 gi|147918987|ref|YP_687286.1| - 0.008 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Sen15 protein tRNA_int_end_N2 PF12928.2 gi|147918987|ref|YP_687286.1| - 0.043 13.2 0.5 4.1 6.9 0.0 2.3 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term SecA_SW PF07516.8 gi|147918987|ref|YP_687286.1| - 0.059 13.1 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 SecA Wing and Scaffold domain Diphthamide_syn PF01866.12 gi|147918988|ref|YP_687285.1| - 2.5e-96 322.5 0.0 2.8e-96 322.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein He_PIG PF05345.7 gi|147918989|ref|YP_687284.1| - 5.1e-38 128.8 104.7 1.2e-09 38.0 2.6 14.1 12 3 2 14 14 14 6 Putative Ig domain Lactonase PF10282.4 gi|147918989|ref|YP_687284.1| - 1.8e-12 47.0 11.5 7.8e-08 31.7 3.1 4.5 2 1 0 3 3 3 2 Lactonase, 7-bladed beta-propeller NHL PF01436.16 gi|147918989|ref|YP_687284.1| - 7.5e-09 35.1 21.2 0.21 11.5 0.3 8.0 8 0 0 8 8 8 4 NHL repeat Y_Y_Y PF07495.8 gi|147918989|ref|YP_687284.1| - 1.7e-08 34.0 0.4 2.1 8.1 0.0 5.9 5 0 0 5 5 5 3 Y_Y_Y domain Cytochrom_D1 PF02239.11 gi|147918989|ref|YP_687284.1| - 8.4e-06 24.3 6.7 9.9e-05 20.7 0.5 3.1 1 1 2 3 3 3 3 Cytochrome D1 heme domain DUF1161 PF06649.7 gi|147918989|ref|YP_687284.1| - 0.11 12.4 2.0 1.5e+02 2.4 0.0 4.8 5 0 0 5 5 5 0 Protein of unknown function (DUF1161) PPR_2 PF13041.1 gi|147918989|ref|YP_687284.1| - 0.16 11.9 0.3 3.8 7.5 0.0 3.0 3 0 0 3 3 3 0 PPR repeat family Cupin_2 PF07883.6 gi|147918990|ref|YP_687283.1| - 9.2e-15 53.9 0.0 2.3e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 Cupin domain HTH_19 PF12844.2 gi|147918990|ref|YP_687283.1| - 2.3e-11 43.5 0.3 3.8e-11 42.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|147918990|ref|YP_687283.1| - 3.3e-11 42.8 0.4 6.2e-11 41.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|147918990|ref|YP_687283.1| - 2.3e-07 30.8 0.0 3.2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain AraC_binding PF02311.14 gi|147918990|ref|YP_687283.1| - 0.0074 15.9 0.0 0.016 14.8 0.0 1.6 1 0 0 1 1 1 1 AraC-like ligand binding domain HTH_26 PF13443.1 gi|147918990|ref|YP_687283.1| - 0.014 15.5 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MannoseP_isomer PF01050.13 gi|147918990|ref|YP_687283.1| - 0.045 13.3 0.0 0.081 12.5 0.0 1.6 2 0 0 2 2 2 0 Mannose-6-phosphate isomerase HTH_37 PF13744.1 gi|147918990|ref|YP_687283.1| - 0.098 12.4 0.2 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.8 gi|147918990|ref|YP_687283.1| - 0.14 12.3 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain AMP-binding PF00501.23 gi|147918991|ref|YP_687282.1| - 1.5e-85 287.1 0.0 1.8e-85 286.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|147918991|ref|YP_687282.1| - 2.9e-19 69.7 2.3 3.9e-19 69.3 0.9 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DCP1 PF06058.8 gi|147918992|ref|YP_687281.1| - 0.099 12.6 0.2 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Dcp1-like decapping family CMD PF02627.15 gi|147918993|ref|YP_687280.1| - 1.3e-24 85.8 0.1 1.6e-24 85.5 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Chorismate_bind PF00425.13 gi|147918993|ref|YP_687280.1| - 0.036 13.3 0.0 0.041 13.2 0.0 1.1 1 0 0 1 1 1 0 chorismate binding enzyme Acetyltransf_3 PF13302.1 gi|147918994|ref|YP_687279.1| - 5.6e-23 81.6 0.1 6.4e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|147918994|ref|YP_687279.1| - 7.7e-11 41.8 0.0 1.2e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|147918994|ref|YP_687279.1| - 3.4e-08 33.5 0.1 5.1e-08 32.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147918994|ref|YP_687279.1| - 6.6e-07 29.3 0.0 8.7e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147918994|ref|YP_687279.1| - 0.0079 15.9 0.1 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein MFS_1 PF07690.11 gi|147918995|ref|YP_687278.1| - 1.9e-63 214.3 80.8 5.6e-52 176.6 38.5 2.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147918995|ref|YP_687278.1| - 5.9e-12 44.8 13.3 5.9e-12 44.8 9.2 3.2 3 1 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|147918995|ref|YP_687278.1| - 3.5e-10 38.8 42.6 6.6e-08 31.3 16.3 3.2 1 1 2 3 3 3 3 MFS/sugar transport protein MFS_3 PF05977.8 gi|147918995|ref|YP_687278.1| - 1.7e-07 29.7 7.1 1.7e-07 29.7 4.9 2.4 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|147918995|ref|YP_687278.1| - 0.0058 16.3 0.0 0.0058 16.3 0.0 4.1 3 2 1 5 5 5 1 MFS_1 like family Trypsin_2 PF13365.1 gi|147918997|ref|YP_687276.1| - 1.6e-24 86.2 0.8 2.6e-24 85.4 0.5 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|147918997|ref|YP_687276.1| - 1.3e-16 60.9 0.1 3.2e-16 59.5 0.1 1.6 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|147918997|ref|YP_687276.1| - 3.1e-13 49.4 1.0 8.9e-13 47.9 0.7 1.8 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|147918997|ref|YP_687276.1| - 5.7e-08 32.8 1.7 1.6e-07 31.3 0.9 1.9 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) GRASP55_65 PF04495.9 gi|147918997|ref|YP_687276.1| - 0.00032 20.7 0.0 0.00062 19.7 0.0 1.4 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_S46 PF10459.4 gi|147918997|ref|YP_687276.1| - 0.0007 18.1 0.7 0.34 9.2 0.7 2.1 2 0 0 2 2 2 2 Peptidase S46 Tricorn_PDZ PF14685.1 gi|147918997|ref|YP_687276.1| - 0.027 14.2 0.1 0.1 12.3 0.1 2.1 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_S32 PF05579.8 gi|147918997|ref|YP_687276.1| - 0.067 12.1 0.2 4.3 6.2 0.1 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S7 PF00949.16 gi|147918997|ref|YP_687276.1| - 0.067 12.5 0.2 0.13 11.6 0.2 1.5 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease DUF362 PF04015.7 gi|147918998|ref|YP_687275.1| - 3e-25 88.9 0.0 1.5e-24 86.6 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|147918998|ref|YP_687275.1| - 1.7e-12 46.3 18.5 1.2e-07 30.9 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147918998|ref|YP_687275.1| - 4.5e-12 45.5 21.9 3.8e-09 36.1 8.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147918998|ref|YP_687275.1| - 4.1e-10 39.0 15.4 2.9e-06 26.8 3.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147918998|ref|YP_687275.1| - 8.5e-10 38.8 13.4 1.7e-09 37.9 9.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147918998|ref|YP_687275.1| - 1.1e-09 38.0 8.9 2.2e-09 37.0 6.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147918998|ref|YP_687275.1| - 1.2e-09 37.4 16.1 0.00012 21.8 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147918998|ref|YP_687275.1| - 1.7e-09 37.7 9.5 3.6e-09 36.7 6.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147918998|ref|YP_687275.1| - 4.6e-08 33.6 4.9 0.0011 19.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|147918998|ref|YP_687275.1| - 6.1e-07 29.3 22.0 1.3e-05 25.1 8.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147918998|ref|YP_687275.1| - 6.9e-07 29.0 11.2 0.0053 16.9 1.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147918998|ref|YP_687275.1| - 1.8e-06 28.2 4.4 0.0091 16.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147918998|ref|YP_687275.1| - 1.5e-05 25.3 18.5 0.013 15.9 3.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147918998|ref|YP_687275.1| - 9.4e-05 22.2 3.3 0.00016 21.4 2.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147918998|ref|YP_687275.1| - 0.00019 21.9 15.8 0.0069 16.9 2.9 2.5 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|147918998|ref|YP_687275.1| - 0.00043 20.6 22.4 0.017 15.6 4.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|147918998|ref|YP_687275.1| - 0.003 17.9 13.4 0.064 13.6 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain DUF2088 PF09861.4 gi|147918998|ref|YP_687275.1| - 0.019 13.9 0.1 0.032 13.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) CsbD PF05532.7 gi|147918998|ref|YP_687275.1| - 0.058 13.0 0.5 0.34 10.6 0.1 2.2 2 0 0 2 2 2 0 CsbD-like DUF4001 PF13165.1 gi|147918998|ref|YP_687275.1| - 1.6 8.5 6.8 3.2 7.5 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) DDE_Tnp_1 PF01609.16 gi|147918999|ref|YP_687274.1| - 8.6e-12 45.0 0.0 1.7e-11 44.0 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain Acetyltransf_6 PF13480.1 gi|147919000|ref|YP_687273.1| - 1.9e-15 57.0 0.0 3.2e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919000|ref|YP_687273.1| - 2.5e-12 46.2 0.0 2.9e-08 32.8 0.0 2.1 1 1 1 2 2 2 2 FemAB family DUF2156 PF09924.4 gi|147919000|ref|YP_687273.1| - 0.032 13.0 0.2 0.27 9.9 0.2 2.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) FKBP_C PF00254.23 gi|147919001|ref|YP_687272.1| - 4.2e-20 71.5 0.0 6.9e-20 70.8 0.0 1.4 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Peptidase_S8 PF00082.17 gi|147919002|ref|YP_687271.1| - 3.9e-73 246.0 7.2 5.3e-73 245.6 5.0 1.2 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|147919002|ref|YP_687271.1| - 1.8e-09 38.0 0.6 4.1e-09 36.8 0.4 1.6 1 0 0 1 1 1 1 Peptidase inhibitor I9 DEC-1_N PF04625.8 gi|147919002|ref|YP_687271.1| - 3.6 6.1 8.3 7.2 5.1 5.8 1.4 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Trypan_PARP PF05887.6 gi|147919002|ref|YP_687271.1| - 4.6 7.0 14.2 13 5.6 9.8 1.7 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) SnoaL PF07366.7 gi|147919003|ref|YP_687270.1| - 2.4e-32 111.1 0.0 3e-32 110.8 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.2 gi|147919003|ref|YP_687270.1| - 1.3e-17 64.1 0.0 1.6e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain NosD PF05048.8 gi|147919004|ref|YP_687269.1| - 4.5e-15 55.4 5.0 1.2e-07 31.1 0.1 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|147919004|ref|YP_687269.1| - 2.7e-11 43.4 15.7 3.9e-06 26.7 0.9 2.2 1 1 1 2 2 2 2 Right handed beta helix region HTH_27 PF13463.1 gi|147919005|ref|YP_687268.1| - 0.0032 17.7 0.2 0.018 15.3 0.0 2.4 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|147919005|ref|YP_687268.1| - 0.0087 15.8 0.0 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MazG-like PF12643.2 gi|147919005|ref|YP_687268.1| - 0.094 12.6 1.1 9.5 6.2 0.0 3.6 4 0 0 4 4 4 0 MazG-like family PAS_3 PF08447.6 gi|147919006|ref|YP_687267.1| - 5e-38 129.0 0.3 4.2e-17 62.0 0.0 3.6 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|147919006|ref|YP_687267.1| - 1.7e-30 105.2 0.0 2.8e-16 59.4 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|147919006|ref|YP_687267.1| - 3.9e-25 88.2 0.1 3.6e-08 33.7 0.0 3.4 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|147919006|ref|YP_687267.1| - 5.4e-23 80.8 0.0 1.1e-22 79.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|147919006|ref|YP_687267.1| - 3.3e-21 75.1 0.2 4.3e-06 26.4 0.0 3.3 3 0 0 3 3 3 3 PAS fold HATPase_c_3 PF13589.1 gi|147919006|ref|YP_687267.1| - 0.048 13.3 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|147919006|ref|YP_687267.1| - 0.052 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 GHKL domain HATPase_c_2 PF13581.1 gi|147919006|ref|YP_687267.1| - 0.066 13.0 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|147919007|ref|YP_687266.1| - 4.7e-41 139.3 0.4 4.9e-13 49.3 0.3 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|147919007|ref|YP_687266.1| - 2.8e-26 91.5 0.0 2.1e-11 43.6 0.1 3.7 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|147919007|ref|YP_687266.1| - 1.7e-21 76.3 0.0 8.4e-08 32.2 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|147919007|ref|YP_687266.1| - 4.7e-19 68.2 0.1 1.4e-06 28.2 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|147919007|ref|YP_687266.1| - 1.5e-16 60.0 0.2 6.8e-16 57.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|147919007|ref|YP_687266.1| - 1.5e-14 53.2 0.2 7.7e-06 25.5 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_10 PF13596.1 gi|147919007|ref|YP_687266.1| - 0.00077 19.6 1.4 0.0024 18.1 0.3 2.5 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|147919007|ref|YP_687266.1| - 0.025 14.2 0.1 0.086 12.4 0.1 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|147919007|ref|YP_687266.1| - 0.039 13.9 0.3 0.15 12.1 0.0 2.1 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|147919008|ref|YP_687265.1| - 4.2e-22 77.9 0.0 7.6e-22 77.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|147919008|ref|YP_687265.1| - 5.3e-16 58.5 2.8 9.1e-16 57.8 0.0 2.3 2 0 0 2 2 2 1 HAMP domain Cache_3 PF14827.1 gi|147919008|ref|YP_687265.1| - 5e-06 26.3 0.0 1.3e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 Sensory domain of two-component sensor kinase Cache_1 PF02743.13 gi|147919008|ref|YP_687265.1| - 5.4e-06 25.8 2.5 4.1e-05 23.0 0.3 2.9 3 0 0 3 3 3 1 Cache domain HisKA PF00512.20 gi|147919008|ref|YP_687265.1| - 0.00023 21.0 0.1 0.00056 19.8 0.0 1.7 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|147919008|ref|YP_687265.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain UPF0118 PF01594.11 gi|147919008|ref|YP_687265.1| - 0.0076 15.2 2.7 0.07 12.0 0.2 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF20 HATPase_c_3 PF13589.1 gi|147919008|ref|YP_687265.1| - 0.034 13.8 0.0 0.071 12.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PIG-P PF08510.7 gi|147919008|ref|YP_687265.1| - 0.78 9.3 3.8 1.7 8.2 0.9 2.6 2 1 0 2 2 2 0 PIG-P Methyltransf_18 PF12847.2 gi|147919009|ref|YP_687264.1| - 1.9e-12 47.7 0.1 3.3e-12 46.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919009|ref|YP_687264.1| - 4.5e-09 36.0 0.0 1.3e-08 34.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|147919009|ref|YP_687264.1| - 2.8e-08 33.1 0.0 4.4e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|147919009|ref|YP_687264.1| - 5.6e-08 32.8 0.2 8.9e-08 32.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|147919009|ref|YP_687264.1| - 2.2e-06 27.3 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|147919009|ref|YP_687264.1| - 1.5e-05 24.7 0.0 4.5e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147919009|ref|YP_687264.1| - 3e-05 24.4 0.0 5.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147919009|ref|YP_687264.1| - 5.4e-05 23.4 0.0 9.7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|147919009|ref|YP_687264.1| - 0.00051 19.4 0.0 0.00078 18.8 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|147919009|ref|YP_687264.1| - 0.00089 19.6 0.1 0.0022 18.4 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|147919009|ref|YP_687264.1| - 0.0036 16.9 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|147919009|ref|YP_687264.1| - 0.0082 15.4 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 UPF0020 PF01170.13 gi|147919009|ref|YP_687264.1| - 0.0092 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RseA_N PF03872.8 gi|147919009|ref|YP_687264.1| - 0.0097 16.1 0.1 0.02 15.2 0.1 1.4 1 0 0 1 1 1 1 Anti sigma-E protein RseA, N-terminal domain Methyltransf_15 PF09445.5 gi|147919009|ref|YP_687264.1| - 0.012 15.2 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|147919009|ref|YP_687264.1| - 0.027 13.8 0.0 0.04 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF1232 PF06803.7 gi|147919010|ref|YP_687263.1| - 2.6e-12 45.9 6.6 4.7e-12 45.1 4.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1232) PAS_9 PF13426.1 gi|147919011|ref|YP_687262.1| - 1.8e-52 176.0 2.5 1.3e-13 51.1 0.0 5.7 6 0 0 6 6 6 5 PAS domain PAS_3 PF08447.6 gi|147919011|ref|YP_687262.1| - 4.5e-52 174.1 2.6 3.7e-11 42.9 0.0 5.4 5 0 0 5 5 5 5 PAS fold PAS PF00989.19 gi|147919011|ref|YP_687262.1| - 2.3e-39 133.6 0.1 7.6e-10 38.5 0.0 5.3 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.5 gi|147919011|ref|YP_687262.1| - 1.4e-28 99.0 0.0 4.4e-06 26.7 0.0 5.4 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|147919011|ref|YP_687262.1| - 9.1e-21 72.9 0.6 1.1e-06 28.2 0.0 4.7 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.21 gi|147919011|ref|YP_687262.1| - 6.6e-16 58.0 0.0 1.4e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|147919011|ref|YP_687262.1| - 8.9e-05 22.2 0.0 0.00023 20.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MEKHLA PF08670.6 gi|147919011|ref|YP_687262.1| - 0.00011 21.7 0.1 0.079 12.4 0.0 3.8 3 1 1 4 4 4 1 MEKHLA domain PAS_7 PF12860.2 gi|147919011|ref|YP_687262.1| - 0.00033 20.6 1.0 1.5 8.8 0.0 4.9 5 1 0 5 5 5 2 PAS fold HATPase_c_5 PF14501.1 gi|147919011|ref|YP_687262.1| - 0.0057 16.3 0.0 0.032 13.9 0.0 2.2 2 0 0 2 2 2 1 GHKL domain Metallophos_2 PF12850.2 gi|147919012|ref|YP_687261.1| - 9.2e-12 45.0 0.1 1.8e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147919012|ref|YP_687261.1| - 2.5e-07 30.3 0.7 5e-07 29.3 0.5 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF308 PF03729.8 gi|147919013|ref|YP_687260.1| - 1.3e-20 73.1 59.5 2.3e-11 43.5 10.9 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF4337 PF14235.1 gi|147919013|ref|YP_687260.1| - 6 6.6 10.5 1.7 8.4 3.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF39 PF01837.11 gi|147919014|ref|YP_687259.1| - 4e-111 370.9 0.0 4.6e-111 370.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF39 Fer4_6 PF12837.2 gi|147919014|ref|YP_687259.1| - 6.1e-07 29.0 10.5 3.4e-05 23.5 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919014|ref|YP_687259.1| - 1.7e-05 24.4 19.5 0.00074 19.2 7.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919014|ref|YP_687259.1| - 0.00075 19.2 11.1 0.0026 17.5 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|147919014|ref|YP_687259.1| - 0.00079 18.9 12.9 0.0011 18.5 1.3 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919014|ref|YP_687259.1| - 0.0044 17.0 2.7 0.01 15.8 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919014|ref|YP_687259.1| - 0.0082 16.5 11.6 0.092 13.1 7.1 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147919014|ref|YP_687259.1| - 0.017 15.5 1.6 0.017 15.5 1.1 2.1 2 1 0 2 2 1 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|147919014|ref|YP_687259.1| - 0.024 15.2 7.0 0.11 13.0 0.5 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|147919014|ref|YP_687259.1| - 1.3 8.9 10.6 0.1 12.4 0.5 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919014|ref|YP_687259.1| - 1.9 8.8 11.7 2.8 8.2 2.3 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919014|ref|YP_687259.1| - 7.8 7.1 12.3 0.19 12.1 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|147919015|ref|YP_687258.1| - 5.1e-08 32.1 16.1 0.00028 20.3 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919015|ref|YP_687258.1| - 8.3e-08 32.3 11.9 1.4e-07 31.6 8.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919015|ref|YP_687258.1| - 2.2e-07 30.4 16.6 0.00091 18.9 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919015|ref|YP_687258.1| - 5.1e-07 29.4 9.9 8.8e-07 28.6 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919015|ref|YP_687258.1| - 1.4e-06 28.6 13.7 6e-06 26.5 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919015|ref|YP_687258.1| - 6.2e-06 26.1 14.8 0.0096 16.1 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919015|ref|YP_687258.1| - 6.9e-06 26.7 8.9 0.016 15.9 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147919015|ref|YP_687258.1| - 1.9e-05 24.4 7.3 0.016 15.0 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919015|ref|YP_687258.1| - 3.4e-05 24.1 9.4 0.0049 17.2 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919015|ref|YP_687258.1| - 6.9e-05 22.5 12.9 0.0025 17.6 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147919015|ref|YP_687258.1| - 8.4e-05 22.8 4.8 0.021 15.1 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919015|ref|YP_687258.1| - 0.0002 21.3 12.7 0.0021 18.0 9.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919015|ref|YP_687258.1| - 0.0004 20.7 19.1 0.067 13.7 2.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147919015|ref|YP_687258.1| - 0.027 15.0 9.2 0.32 11.5 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Flavodoxin_5 PF12724.2 gi|147919015|ref|YP_687258.1| - 0.094 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin domain Fer4_13 PF13370.1 gi|147919015|ref|YP_687258.1| - 0.97 9.8 12.9 2 8.8 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain NikR_C PF08753.6 gi|147919016|ref|YP_687257.1| - 9e-34 115.2 3.5 1.2e-33 114.8 2.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|147919016|ref|YP_687257.1| - 1.9e-09 36.9 0.0 6.2e-09 35.3 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Bromo_TP PF07524.8 gi|147919016|ref|YP_687257.1| - 0.068 12.9 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Bromodomain associated CbiQ PF02361.11 gi|147919017|ref|YP_687256.1| - 1.7e-33 116.0 10.9 2.4e-33 115.5 7.6 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|147919018|ref|YP_687255.1| - 3.4e-32 111.6 0.0 6.8e-32 110.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919018|ref|YP_687255.1| - 1.8e-16 60.9 0.3 5.3e-15 56.1 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|147919018|ref|YP_687255.1| - 9.1e-10 38.1 0.0 0.00064 18.8 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|147919018|ref|YP_687255.1| - 3.4e-07 29.7 0.0 3.9e-06 26.2 0.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|147919018|ref|YP_687255.1| - 2.4e-05 23.7 0.0 5.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|147919018|ref|YP_687255.1| - 0.0011 18.8 0.0 0.016 15.1 0.0 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|147919018|ref|YP_687255.1| - 0.0047 17.2 0.0 0.0057 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|147919018|ref|YP_687255.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|147919018|ref|YP_687255.1| - 0.016 15.2 0.1 0.073 13.0 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|147919018|ref|YP_687255.1| - 0.021 13.9 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|147919018|ref|YP_687255.1| - 0.032 14.4 0.0 0.097 12.8 0.0 1.8 2 0 0 2 2 2 0 RNA helicase DUF2813 PF11398.3 gi|147919018|ref|YP_687255.1| - 0.042 12.9 0.0 0.042 12.9 0.0 2.2 2 1 2 4 4 4 0 Protein of unknown function (DUF2813) Miro PF08477.8 gi|147919018|ref|YP_687255.1| - 0.048 14.1 0.0 0.1 13.1 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|147919018|ref|YP_687255.1| - 0.063 13.1 0.0 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain HD_3 PF13023.1 gi|147919019|ref|YP_687254.1| - 9.6e-56 188.0 1.7 1.1e-55 187.8 1.2 1.0 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|147919019|ref|YP_687254.1| - 4.4e-07 29.9 1.6 1e-06 28.7 1.1 1.6 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|147919019|ref|YP_687254.1| - 0.00045 19.5 0.2 0.0015 17.8 0.0 1.7 2 0 0 2 2 2 1 HDOD domain CbiM PF01891.11 gi|147919020|ref|YP_687253.1| - 1.2e-63 214.4 18.8 1.3e-63 214.3 13.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|147919020|ref|YP_687253.1| - 0.001 18.9 26.1 0.001 18.9 18.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3816) DUF2781 PF10914.3 gi|147919020|ref|YP_687253.1| - 0.36 10.5 7.0 6 6.6 1.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2781) DUF1129 PF06570.6 gi|147919020|ref|YP_687253.1| - 5.3 6.2 6.6 11 5.2 3.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) PDGLE PF13190.1 gi|147919021|ref|YP_687252.1| - 5.7e-14 51.5 1.1 6.9e-14 51.3 0.8 1.1 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.12 gi|147919021|ref|YP_687252.1| - 0.00096 18.6 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Yip1 domain MtrC PF04211.8 gi|147919021|ref|YP_687252.1| - 0.061 12.3 0.1 0.079 11.9 0.1 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C Nitroreductase PF00881.19 gi|147919022|ref|YP_687251.1| - 7.8e-32 110.3 0.0 1.1e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|147919022|ref|YP_687251.1| - 0.00036 19.7 1.7 0.18 10.9 0.2 2.8 1 1 0 2 2 2 2 Putative TM nitroreductase FMN_red PF03358.10 gi|147919023|ref|YP_687250.1| - 2.3e-07 30.4 0.0 2.9e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|147919023|ref|YP_687250.1| - 3.6e-05 23.1 0.0 0.00011 21.5 0.0 1.8 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|147919023|ref|YP_687250.1| - 3.7e-05 23.7 0.1 0.032 14.2 0.0 2.6 1 1 2 3 3 3 1 Flavodoxin domain PAS_10 PF13596.1 gi|147919023|ref|YP_687250.1| - 0.0087 16.3 0.0 0.033 14.4 0.0 1.7 2 0 0 2 2 2 1 PAS domain PPR_2 PF13041.1 gi|147919023|ref|YP_687250.1| - 0.025 14.5 0.1 0.07 13.1 0.1 1.7 1 0 0 1 1 1 0 PPR repeat family Flavodoxin_3 PF12641.2 gi|147919023|ref|YP_687250.1| - 0.058 12.8 0.0 2.2 7.6 0.0 2.3 1 1 1 2 2 2 0 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|147919023|ref|YP_687250.1| - 0.1 12.5 0.1 1.2 9.1 0.1 2.2 1 1 0 1 1 1 0 Flavodoxin AIRS PF00586.19 gi|147919024|ref|YP_687249.1| - 3.9e-21 75.0 1.9 7e-21 74.2 1.3 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|147919024|ref|YP_687249.1| - 6.6e-09 35.9 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Acetyltransf_1 PF00583.19 gi|147919025|ref|YP_687248.1| - 1.5e-13 50.5 0.1 2.6e-13 49.7 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147919025|ref|YP_687248.1| - 4.3e-10 39.6 0.1 6.9e-10 38.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147919025|ref|YP_687248.1| - 9.9e-08 32.1 0.0 2.3e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147919025|ref|YP_687248.1| - 0.0022 18.1 0.0 0.0041 17.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147919025|ref|YP_687248.1| - 0.021 14.5 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_9 PF13527.1 gi|147919025|ref|YP_687248.1| - 0.03 14.1 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147919025|ref|YP_687248.1| - 0.047 13.5 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147919025|ref|YP_687248.1| - 0.081 12.8 0.0 0.41 10.5 0.0 2.1 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain ABC_tran PF00005.22 gi|147919026|ref|YP_687247.1| - 9e-22 77.8 0.1 1.5e-21 77.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919026|ref|YP_687247.1| - 1.4e-06 28.4 0.7 9.8e-05 22.4 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|147919026|ref|YP_687247.1| - 0.00018 22.3 0.0 0.00045 21.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919026|ref|YP_687247.1| - 0.00027 20.3 0.1 0.00054 19.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|147919026|ref|YP_687247.1| - 0.0011 18.9 0.0 0.028 14.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Rad17 PF03215.10 gi|147919026|ref|YP_687247.1| - 0.0017 17.1 0.0 0.0065 15.1 0.0 1.8 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|147919026|ref|YP_687247.1| - 0.0022 18.1 0.0 0.026 14.7 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|147919026|ref|YP_687247.1| - 0.0023 17.1 0.3 0.0092 15.2 0.1 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|147919026|ref|YP_687247.1| - 0.0027 18.0 0.0 0.0056 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|147919026|ref|YP_687247.1| - 0.0038 16.3 0.0 0.0082 15.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|147919026|ref|YP_687247.1| - 0.0058 15.8 0.0 0.0097 15.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|147919026|ref|YP_687247.1| - 0.008 15.8 0.3 0.03 14.0 0.0 2.0 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|147919026|ref|YP_687247.1| - 0.0082 16.4 0.0 0.017 15.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|147919026|ref|YP_687247.1| - 0.01 15.7 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|147919026|ref|YP_687247.1| - 0.01 15.9 0.0 0.029 14.5 0.0 2.0 1 1 1 2 2 2 0 AAA domain T2SE PF00437.15 gi|147919026|ref|YP_687247.1| - 0.019 13.8 0.0 0.032 13.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein HAD PF12710.2 gi|147919026|ref|YP_687247.1| - 0.024 14.7 0.0 0.071 13.2 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_16 PF13191.1 gi|147919026|ref|YP_687247.1| - 0.033 14.1 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MutS_V PF00488.16 gi|147919026|ref|YP_687247.1| - 0.036 13.4 0.4 0.13 11.6 0.0 2.0 3 0 0 3 3 3 0 MutS domain V AAA_10 PF12846.2 gi|147919026|ref|YP_687247.1| - 0.057 12.8 0.0 0.058 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain DUF815 PF05673.8 gi|147919026|ref|YP_687247.1| - 0.084 11.7 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MRF_C1 PF13887.1 gi|147919026|ref|YP_687247.1| - 0.084 11.9 0.1 0.18 10.8 0.0 1.5 1 0 0 1 1 1 0 Myelin gene regulatory factor -C-terminal domain 1 MMR_HSR1 PF01926.18 gi|147919026|ref|YP_687247.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|147919026|ref|YP_687247.1| - 0.1 13.1 0.0 0.37 11.2 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein RNA_helicase PF00910.17 gi|147919026|ref|YP_687247.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_15 PF13175.1 gi|147919026|ref|YP_687247.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DS PF01916.12 gi|147919027|ref|YP_687246.1| - 8.5e-89 297.5 0.1 9.7e-89 297.4 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Fer4_20 PF14691.1 gi|147919028|ref|YP_687245.1| - 0.082 12.5 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CxxCxxCC PF03692.10 gi|147919029|ref|YP_687244.1| - 2.2e-10 40.8 1.0 4e-10 40.0 0.7 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF91 PF01939.11 gi|147919030|ref|YP_687243.1| - 2.1e-63 213.5 0.1 2.4e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|147919030|ref|YP_687243.1| - 0.00079 19.3 0.1 0.0012 18.7 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF1703 PF08011.6 gi|147919030|ref|YP_687243.1| - 0.0074 15.9 0.1 0.051 13.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1703) UPF0102 PF02021.12 gi|147919030|ref|YP_687243.1| - 0.025 14.5 0.0 0.059 13.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Cas_Cas4 PF01930.12 gi|147919030|ref|YP_687243.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF83 MFS_1 PF07690.11 gi|147919031|ref|YP_687242.1| - 2.4e-14 52.8 56.2 4.5e-14 51.9 31.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Mut7-C PF01927.11 gi|147919032|ref|YP_687241.1| - 4.2e-37 127.3 0.2 4.7e-37 127.2 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-C2H2_4 PF13894.1 gi|147919032|ref|YP_687241.1| - 0.091 13.1 0.7 22 5.6 0.0 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger Peptidase_M32 PF02074.10 gi|147919032|ref|YP_687241.1| - 0.12 10.9 0.0 0.14 10.7 0.0 1.0 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase DUF164 PF02591.10 gi|147919032|ref|YP_687241.1| - 0.12 12.1 1.1 1.6 8.5 0.8 2.3 1 1 0 1 1 1 0 Putative zinc ribbon domain PadR PF03551.9 gi|147919033|ref|YP_687240.1| - 4.3e-22 77.6 0.2 1e-21 76.4 0.2 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|147919033|ref|YP_687240.1| - 0.00018 21.4 0.0 0.00097 19.1 0.0 2.1 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|147919033|ref|YP_687240.1| - 0.00036 20.2 0.0 0.59 9.9 0.0 2.5 1 1 1 2 2 2 2 Winged helix-turn-helix Replic_Relax PF13814.1 gi|147919033|ref|YP_687240.1| - 0.0036 17.1 0.1 0.012 15.4 0.0 1.7 1 1 1 2 2 2 1 Replication-relaxation MarR_2 PF12802.2 gi|147919033|ref|YP_687240.1| - 0.012 15.3 0.0 0.046 13.3 0.0 2.0 2 1 0 2 2 2 0 MarR family TrmB PF01978.14 gi|147919033|ref|YP_687240.1| - 0.013 15.1 0.1 0.13 11.9 0.0 2.5 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|147919033|ref|YP_687240.1| - 0.056 12.8 0.0 0.22 10.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_S8 PF00410.14 gi|147919033|ref|YP_687240.1| - 0.091 12.6 0.1 0.31 10.8 0.0 1.7 1 1 0 2 2 2 0 Ribosomal protein S8 DeoC PF01791.4 gi|147919034|ref|YP_687239.1| - 4.8e-60 202.7 0.3 5.6e-60 202.5 0.2 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PEP_mutase PF13714.1 gi|147919034|ref|YP_687239.1| - 0.01 15.0 0.4 2 7.5 0.0 2.6 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase DHQS PF01959.11 gi|147919035|ref|YP_687238.1| - 1.5e-147 490.9 0.3 1.7e-147 490.8 0.2 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) OapA PF04225.7 gi|147919035|ref|YP_687238.1| - 0.033 14.0 0.0 0.1 12.5 0.0 1.8 1 0 0 1 1 1 0 Opacity-associated protein A LysM-like domain TOBE_2 PF08402.5 gi|147919035|ref|YP_687238.1| - 0.037 14.0 0.1 4.1 7.4 0.0 3.3 3 0 0 3 3 3 0 TOBE domain Abhydrolase_5 PF12695.2 gi|147919036|ref|YP_687237.1| - 8.6e-16 57.9 0.1 1.3e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|147919036|ref|YP_687237.1| - 4.2e-11 41.9 0.0 5.7e-11 41.4 0.0 1.1 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) DLH PF01738.13 gi|147919036|ref|YP_687237.1| - 2.3e-08 33.6 0.0 3e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|147919036|ref|YP_687237.1| - 1.7e-05 24.8 0.0 3.6e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|147919036|ref|YP_687237.1| - 0.0032 16.9 0.3 0.0096 15.3 0.1 1.8 2 0 0 2 2 2 1 Putative esterase Abhydrolase_3 PF07859.8 gi|147919036|ref|YP_687237.1| - 0.0045 16.5 0.0 0.0095 15.5 0.0 1.6 1 0 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|147919036|ref|YP_687237.1| - 0.03 14.0 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Prenyltrans_2 PF13249.1 gi|147919037|ref|YP_687236.1| - 1.5e-25 89.7 3.0 2.6e-11 43.9 0.1 3.3 2 1 1 3 3 3 3 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|147919037|ref|YP_687236.1| - 7.1e-24 83.9 1.6 4.7e-10 39.4 0.1 3.4 2 1 1 3 3 3 3 Prenyltransferase-like Prenyltrans PF00432.16 gi|147919037|ref|YP_687236.1| - 8.2e-20 70.0 0.5 3.2e-07 29.7 0.0 4.9 6 0 0 6 6 6 4 Prenyltransferase and squalene oxidase repeat A2M_comp PF07678.9 gi|147919037|ref|YP_687236.1| - 6.2e-09 35.4 0.4 3.9e-05 23.0 0.1 4.1 1 1 1 2 2 2 2 A-macroglobulin complement component Pec_lyase PF09492.5 gi|147919037|ref|YP_687236.1| - 0.012 14.8 0.5 1.2 8.2 0.1 2.9 1 1 1 2 2 2 0 Pectic acid lyase Radical_SAM PF04055.16 gi|147919038|ref|YP_687235.1| - 8e-08 32.6 0.0 2.3e-07 31.1 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|147919038|ref|YP_687235.1| - 1e-07 31.9 0.0 6.8e-07 29.3 0.0 2.3 2 1 1 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|147919038|ref|YP_687235.1| - 4e-05 23.7 0.0 0.00019 21.5 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain HEPN PF05168.9 gi|147919038|ref|YP_687235.1| - 0.014 15.3 0.2 0.043 13.7 0.1 1.8 1 0 0 1 1 1 0 HEPN domain TrkH PF02386.11 gi|147919039|ref|YP_687234.1| - 5.4e-61 206.1 31.5 5.6e-60 202.7 16.5 2.2 2 0 0 2 2 2 2 Cation transport protein Zn-ribbon_8 PF09723.5 gi|147919040|ref|YP_687233.1| - 0.00084 19.2 14.0 0.23 11.4 2.8 3.5 1 1 2 3 3 3 2 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|147919040|ref|YP_687233.1| - 0.0013 18.4 2.7 9.5 6.0 0.1 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger HypA PF01155.14 gi|147919040|ref|YP_687233.1| - 0.016 14.8 3.4 0.075 12.7 0.5 2.2 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Elf1 PF05129.8 gi|147919040|ref|YP_687233.1| - 0.033 13.8 0.2 0.033 13.8 0.1 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|147919040|ref|YP_687233.1| - 0.056 13.4 6.1 0.66 10.0 0.3 3.4 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|147919040|ref|YP_687233.1| - 0.059 13.1 5.3 0.72 9.6 0.0 3.3 3 1 0 3 3 2 0 Prokaryotic RING finger family 1 FYVE PF01363.16 gi|147919040|ref|YP_687233.1| - 0.065 13.1 3.1 0.19 11.6 2.1 1.8 1 1 0 1 1 1 0 FYVE zinc finger zinc_ribbon_2 PF13240.1 gi|147919040|ref|YP_687233.1| - 0.11 12.0 0.3 0.11 12.0 0.2 3.3 3 1 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|147919040|ref|YP_687233.1| - 0.12 11.6 8.2 0.13 11.5 0.1 2.8 4 0 0 4 4 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|147919040|ref|YP_687233.1| - 0.13 11.7 6.4 0.72 9.4 0.7 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|147919040|ref|YP_687233.1| - 0.14 11.9 6.3 9.7 6.1 1.2 3.0 1 1 1 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|147919040|ref|YP_687233.1| - 0.17 12.1 7.5 0.19 12.0 0.4 2.6 1 1 0 2 2 2 0 Restriction alleviation protein Lar ADK_lid PF05191.9 gi|147919040|ref|YP_687233.1| - 0.18 11.4 6.2 5.1 6.8 2.0 3.2 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-AN1 PF01428.11 gi|147919040|ref|YP_687233.1| - 0.18 11.6 4.7 28 4.7 0.0 3.4 3 1 0 3 3 3 0 AN1-like Zinc finger DUF3654 PF12376.3 gi|147919040|ref|YP_687233.1| - 0.21 11.4 1.5 1.8 8.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3654) DiS_P_DiS PF06750.8 gi|147919040|ref|YP_687233.1| - 0.29 10.9 1.5 0.58 9.9 0.2 2.1 2 1 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zinc_ribbon_5 PF13719.1 gi|147919040|ref|YP_687233.1| - 0.31 10.6 7.2 15 5.3 0.5 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|147919040|ref|YP_687233.1| - 0.34 10.9 3.5 1.2 9.1 0.1 2.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 CpXC PF14353.1 gi|147919040|ref|YP_687233.1| - 0.42 10.5 7.9 4.2 7.3 0.0 3.1 2 1 1 3 3 3 0 CpXC protein zinc-ribbons_6 PF07191.7 gi|147919040|ref|YP_687233.1| - 0.42 10.4 7.4 6.8 6.5 0.8 3.3 2 1 2 4 4 4 0 zinc-ribbons zf-CHY PF05495.7 gi|147919040|ref|YP_687233.1| - 0.49 10.5 4.4 0.87 9.7 1.4 2.1 1 1 1 2 2 2 0 CHY zinc finger GFA PF04828.9 gi|147919040|ref|YP_687233.1| - 0.51 10.3 4.1 1.6 8.6 0.8 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_4 PF13717.1 gi|147919040|ref|YP_687233.1| - 0.51 10.0 7.6 23 4.7 0.6 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|147919040|ref|YP_687233.1| - 0.76 9.5 7.8 3.1 7.6 0.4 3.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ogr_Delta PF04606.7 gi|147919040|ref|YP_687233.1| - 0.95 9.1 5.9 1.8 8.3 0.5 2.7 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.6 gi|147919040|ref|YP_687233.1| - 1.1 8.8 11.7 0.74 9.3 0.4 3.5 5 0 0 5 5 3 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|147919040|ref|YP_687233.1| - 1.2 9.0 8.2 2.7 7.8 0.4 3.3 3 1 0 3 3 3 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|147919040|ref|YP_687233.1| - 1.7 8.3 6.3 9.9 5.9 0.1 3.1 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-C2H2 PF00096.21 gi|147919040|ref|YP_687233.1| - 2.2 8.8 0.1 2.2 8.8 0.0 4.1 4 1 0 4 4 4 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.1 gi|147919040|ref|YP_687233.1| - 3.8 7.2 6.8 9 6.0 0.2 3.0 3 0 0 3 3 3 0 Nudix N-terminal zf-CCHC_5 PF14787.1 gi|147919040|ref|YP_687233.1| - 3.8 7.0 6.2 0.59 9.6 1.3 1.9 2 0 0 2 2 1 0 GAG-polyprotein viral zinc-finger PHD PF00628.24 gi|147919040|ref|YP_687233.1| - 6.5 6.5 7.4 24 4.7 2.8 3.0 2 1 1 3 3 3 0 PHD-finger Zn_ribbon_recom PF13408.1 gi|147919040|ref|YP_687233.1| - 7.6 6.8 6.6 7.2 6.9 0.2 2.8 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|147919040|ref|YP_687233.1| - 8.3 6.2 13.8 8.2 6.3 1.4 3.3 3 0 0 3 3 3 0 PhnA Zinc-Ribbon DUF1697 PF08002.6 gi|147919041|ref|YP_687232.1| - 6e-37 126.7 0.0 7.9e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1697) MacB_PCD PF12704.2 gi|147919041|ref|YP_687232.1| - 0.042 13.4 0.0 0.047 13.2 0.0 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain HD_4 PF13328.1 gi|147919041|ref|YP_687232.1| - 0.051 13.2 0.1 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 HD domain LysE PF01810.13 gi|147919043|ref|YP_687230.1| - 7.7e-32 110.1 10.8 9e-32 109.9 7.5 1.0 1 0 0 1 1 1 1 LysE type translocator DUF1206 PF06724.6 gi|147919043|ref|YP_687230.1| - 0.79 9.5 12.8 1.3 8.7 0.3 3.3 2 2 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF952 PF06108.7 gi|147919044|ref|YP_687229.1| - 1.4e-25 88.9 0.0 1.7e-25 88.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF952) DDE_Tnp_ISL3 PF01610.12 gi|147919045|ref|YP_687227.1| - 1.2e-66 224.8 1.8 1.6e-66 224.4 1.2 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|147919045|ref|YP_687227.1| - 1.6e-14 52.7 0.0 4.3e-14 51.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.1 gi|147919045|ref|YP_687227.1| - 0.00012 21.9 10.0 0.00037 20.4 6.9 1.9 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|147919045|ref|YP_687227.1| - 0.012 15.1 1.1 0.017 14.6 0.0 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF746 PF05344.6 gi|147919045|ref|YP_687227.1| - 0.098 12.1 0.0 0.27 10.7 0.0 1.8 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) Cys_rich_CPXG PF14255.1 gi|147919046|ref|YP_687226.1| - 0.0018 18.0 0.1 0.0053 16.5 0.1 1.8 1 0 0 1 1 1 1 Cysteine-rich CPXCG DnaA_N PF11638.3 gi|147919046|ref|YP_687226.1| - 0.09 12.3 3.3 1.7 8.2 1.1 2.6 2 0 0 2 2 2 0 DnaA N-terminal domain HNH PF01844.18 gi|147919047|ref|YP_687225.1| - 4e-10 39.3 3.6 7.2e-10 38.5 2.5 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|147919047|ref|YP_687225.1| - 4.9e-06 26.2 0.1 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease Bac_export_2 PF01312.14 gi|147919047|ref|YP_687225.1| - 3.6 6.3 16.0 5.2 5.8 11.1 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family DUF3296 PF11726.3 gi|147919048|ref|YP_687224.1| - 0.038 13.5 6.6 0.15 11.5 3.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3296) DUF1186 PF06685.6 gi|147919048|ref|YP_687224.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1186) DUF4277 PF14104.1 gi|147919049|ref|YP_685131.1| - 1.7e-44 150.7 0.0 3.5e-44 149.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|147919049|ref|YP_685131.1| - 1.8e-11 43.9 0.1 5.8e-11 42.3 0.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain UPF0542 PF15086.1 gi|147919049|ref|YP_685131.1| - 0.033 13.9 0.4 0.082 12.6 0.3 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 Phage_integrase PF00589.17 gi|147919050|ref|YP_687221.1| - 1e-25 90.3 0.0 1.5e-25 89.8 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Peptidase_S11 PF00768.15 gi|147919050|ref|YP_687221.1| - 0.0015 17.8 0.1 0.0032 16.7 0.0 1.5 1 0 0 1 1 1 1 D-alanyl-D-alanine carboxypeptidase DZR PF12773.2 gi|147919050|ref|YP_687221.1| - 0.072 12.9 0.7 0.2 11.5 0.5 1.7 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|147919050|ref|YP_687221.1| - 0.075 12.5 1.2 0.32 10.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|147919050|ref|YP_687221.1| - 0.85 8.9 6.0 0.21 10.8 1.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|147919051|ref|YP_687219.1| - 1.9e-10 41.1 0.0 2.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily E1_dh PF00676.15 gi|147919052|ref|YP_687218.1| - 1e-87 293.6 0.0 1.2e-87 293.4 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|147919052|ref|YP_687218.1| - 2.1e-05 23.5 0.0 3.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|147919052|ref|YP_687218.1| - 0.0051 16.4 0.0 0.017 14.7 0.0 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.16 gi|147919052|ref|YP_687218.1| - 0.03 13.1 0.0 0.071 11.9 0.0 1.7 2 1 0 2 2 2 0 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.19 gi|147919053|ref|YP_687217.1| - 2.3e-44 151.0 0.0 3.2e-44 150.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|147919053|ref|YP_687217.1| - 3e-41 140.2 0.0 6e-41 139.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.18 gi|147919054|ref|YP_687216.1| - 9.5e-85 283.5 0.0 1.2e-84 283.1 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|147919054|ref|YP_687216.1| - 3.5e-25 87.4 2.7 5.8e-25 86.7 1.9 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|147919054|ref|YP_687216.1| - 6.2e-13 48.1 1.8 1.1e-12 47.3 0.2 2.2 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|147919054|ref|YP_687216.1| - 8.1e-12 44.6 2.4 2.8e-05 23.6 0.3 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|147919054|ref|YP_687216.1| - 1.2e-06 27.8 0.5 0.015 14.4 0.0 2.4 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|147919054|ref|YP_687216.1| - 6.9e-06 25.7 0.5 1.6e-05 24.5 0.3 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_3 PF13437.1 gi|147919054|ref|YP_687216.1| - 3.3e-05 24.1 0.5 0.02 15.2 0.1 2.6 1 1 1 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|147919054|ref|YP_687216.1| - 3.8e-05 23.3 0.1 0.00012 21.6 0.1 1.9 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.17 gi|147919054|ref|YP_687216.1| - 0.013 15.5 0.0 1.1 9.3 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 NQRA PF05896.6 gi|147919054|ref|YP_687216.1| - 0.025 13.7 0.2 0.046 12.9 0.1 1.4 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HlyD PF00529.15 gi|147919054|ref|YP_687216.1| - 0.027 13.7 0.5 4.2 6.5 0.0 2.3 1 1 1 2 2 2 0 HlyD family secretion protein Flagellin_IN PF07196.8 gi|147919054|ref|YP_687216.1| - 0.13 12.2 0.2 2.5 8.1 0.0 2.8 2 1 0 2 2 2 0 Flagellin hook IN motif Pyr_redox_2 PF07992.9 gi|147919055|ref|YP_687215.1| - 9.5e-33 113.7 0.6 1.5e-32 113.1 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|147919055|ref|YP_687215.1| - 8.5e-30 103.0 0.1 2.3e-29 101.6 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.17 gi|147919055|ref|YP_687215.1| - 3.1e-12 46.0 3.3 7.8e-10 38.1 0.7 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|147919055|ref|YP_687215.1| - 1.2e-10 41.6 1.3 4.3e-06 27.0 0.0 3.5 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|147919055|ref|YP_687215.1| - 5.1e-08 32.3 3.5 0.00027 20.1 0.6 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|147919055|ref|YP_687215.1| - 4.4e-07 29.8 3.5 0.0078 16.2 0.4 3.2 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|147919055|ref|YP_687215.1| - 1.6e-06 28.3 2.1 4.3e-06 26.9 1.0 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|147919055|ref|YP_687215.1| - 3.5e-05 23.0 1.7 3.5e-05 23.0 1.2 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.19 gi|147919055|ref|YP_687215.1| - 7.4e-05 21.8 13.4 0.013 14.4 0.8 3.3 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|147919055|ref|YP_687215.1| - 9.7e-05 21.3 0.8 9.7e-05 21.3 0.6 2.5 2 0 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|147919055|ref|YP_687215.1| - 0.00018 21.7 0.4 0.037 14.2 0.1 3.2 3 0 0 3 3 3 1 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|147919055|ref|YP_687215.1| - 0.00052 18.7 5.2 0.026 13.1 0.9 2.2 2 0 0 2 2 2 2 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.9 gi|147919055|ref|YP_687215.1| - 0.00062 19.1 3.4 4.2 6.7 0.0 3.6 3 1 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HI0933_like PF03486.9 gi|147919055|ref|YP_687215.1| - 0.00098 17.6 0.5 0.00098 17.6 0.3 2.7 3 0 0 3 3 3 1 HI0933-like protein ApbA PF02558.11 gi|147919055|ref|YP_687215.1| - 0.011 15.1 5.1 2.1 7.7 0.1 3.1 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|147919055|ref|YP_687215.1| - 0.012 14.6 0.4 0.012 14.6 0.3 3.1 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.7 gi|147919055|ref|YP_687215.1| - 0.013 14.4 2.8 0.026 13.4 0.5 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein XdhC_C PF13478.1 gi|147919055|ref|YP_687215.1| - 0.013 15.7 0.2 0.85 9.9 0.0 2.6 2 1 0 2 2 2 0 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.18 gi|147919055|ref|YP_687215.1| - 0.037 13.7 0.3 2.7 7.6 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|147919055|ref|YP_687215.1| - 0.078 12.6 6.7 0.44 10.1 0.0 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|147919055|ref|YP_687215.1| - 0.27 10.7 4.0 6.6 6.2 0.4 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain BPL_LplA_LipB PF03099.14 gi|147919056|ref|YP_687214.1| - 5e-24 84.6 0.1 7.5e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.4 gi|147919057|ref|YP_687213.1| - 0.0066 16.0 0.0 0.0082 15.8 0.0 1.3 1 1 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus Rhodanese PF00581.15 gi|147919058|ref|YP_687212.1| - 2.9e-21 75.9 0.0 3.3e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain O-FucT PF10250.4 gi|147919058|ref|YP_687212.1| - 0.065 12.3 0.0 0.067 12.2 0.0 1.1 1 0 0 1 1 1 0 GDP-fucose protein O-fucosyltransferase PHB_acc_N PF07879.6 gi|147919058|ref|YP_687212.1| - 0.15 11.8 0.1 0.32 10.7 0.0 1.5 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain AMP-binding PF00501.23 gi|147919060|ref|YP_687210.1| - 1.2e-106 356.6 0.0 1.3e-106 356.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|147919060|ref|YP_687210.1| - 7.6e-15 55.6 0.0 1.6e-14 54.5 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.1 gi|147919061|ref|YP_687209.1| - 2.7e-28 97.8 0.1 4.8e-28 97.0 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Fer4 PF00037.22 gi|147919064|ref|YP_687206.1| - 1.2e-09 37.3 22.2 1.4e-06 27.6 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147919064|ref|YP_687206.1| - 3.2e-06 26.7 21.6 0.0029 17.4 5.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919064|ref|YP_687206.1| - 3.9e-06 27.1 44.8 0.00072 19.8 13.1 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919064|ref|YP_687206.1| - 1.8e-05 24.4 30.6 0.00047 19.9 11.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919064|ref|YP_687206.1| - 2.1e-05 25.1 19.1 0.0091 16.7 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147919064|ref|YP_687206.1| - 9.7e-05 22.1 19.1 0.00037 20.2 13.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919064|ref|YP_687206.1| - 0.00019 21.1 20.2 0.0071 16.2 3.1 2.7 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919064|ref|YP_687206.1| - 0.0002 21.3 11.6 0.023 14.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919064|ref|YP_687206.1| - 0.00063 19.9 19.5 0.0062 16.7 14.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919064|ref|YP_687206.1| - 0.012 15.9 15.3 0.096 13.0 1.6 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain DUF4116 PF13475.1 gi|147919064|ref|YP_687206.1| - 0.025 14.0 0.5 0.034 13.6 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4116) Fer4_18 PF13746.1 gi|147919064|ref|YP_687206.1| - 0.12 12.8 14.7 0.27 11.7 0.9 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919064|ref|YP_687206.1| - 0.19 12.1 20.3 1.3 9.5 4.5 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147919064|ref|YP_687206.1| - 0.21 12.2 19.6 1 10.0 2.0 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147919064|ref|YP_687206.1| - 0.39 11.3 17.4 0.19 12.3 3.1 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain DUF4001 PF13165.1 gi|147919064|ref|YP_687206.1| - 0.98 9.1 9.5 2.1 8.0 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4001) Fer4_13 PF13370.1 gi|147919064|ref|YP_687206.1| - 6.4 7.2 16.6 3 8.3 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|147919065|ref|YP_687205.1| - 7.4e-36 123.6 0.1 8.4e-36 123.4 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase POR_N PF01855.14 gi|147919066|ref|YP_687204.1| - 1.8e-69 233.7 1.6 2.2e-69 233.4 1.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|147919066|ref|YP_687204.1| - 1.5e-05 24.9 0.7 2.5e-05 24.1 0.1 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|147919066|ref|YP_687204.1| - 0.00031 20.2 2.3 0.00055 19.4 1.6 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|147919067|ref|YP_687203.1| - 2.8e-22 78.9 0.6 4.4e-22 78.2 0.4 1.4 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HtaA PF04213.8 gi|147919067|ref|YP_687203.1| - 0.02 15.1 0.0 0.03 14.5 0.0 1.2 1 0 0 1 1 1 0 Htaa DXP_synthase_N PF13292.1 gi|147919067|ref|YP_687203.1| - 0.021 13.7 0.8 0.028 13.3 0.2 1.6 2 0 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase TPR_17 PF13431.1 gi|147919068|ref|YP_687202.1| - 2.8e-18 64.5 0.5 2.2e-06 27.4 0.1 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919068|ref|YP_687202.1| - 1.3e-16 60.7 4.0 3.3e-09 37.1 0.2 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147919068|ref|YP_687202.1| - 4e-15 55.2 1.4 2e-08 33.7 0.6 2.2 2 0 0 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|147919068|ref|YP_687202.1| - 2.7e-12 45.6 3.9 0.0036 17.1 0.0 3.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919068|ref|YP_687202.1| - 3.7e-12 46.4 0.3 2.6e-06 27.6 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919068|ref|YP_687202.1| - 5.4e-10 39.0 0.5 0.00024 21.4 0.0 3.3 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919068|ref|YP_687202.1| - 7.8e-10 38.5 4.9 1.4e-06 28.1 0.2 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919068|ref|YP_687202.1| - 1.2e-08 34.1 3.0 0.0039 16.8 0.0 3.3 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919068|ref|YP_687202.1| - 2.6e-08 33.1 4.6 0.014 15.0 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147919068|ref|YP_687202.1| - 6.5e-07 29.3 0.2 0.031 14.3 0.1 2.3 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|147919068|ref|YP_687202.1| - 9.6e-05 21.5 0.3 0.18 10.8 0.0 2.1 1 1 0 1 1 1 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919068|ref|YP_687202.1| - 0.0004 20.4 0.7 0.0052 16.8 0.3 2.1 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|147919068|ref|YP_687202.1| - 0.0007 19.8 0.5 4.2 8.0 0.0 3.2 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919068|ref|YP_687202.1| - 0.0014 18.2 1.6 2.8 7.9 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|147919068|ref|YP_687202.1| - 0.0052 15.5 2.3 0.0062 15.3 1.6 1.0 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 TPPII_N PF12583.3 gi|147919068|ref|YP_687202.1| - 0.012 15.7 1.5 0.37 10.9 0.3 2.2 1 1 1 2 2 2 0 Tripeptidyl peptidase II N terminal TPR_4 PF07721.9 gi|147919068|ref|YP_687202.1| - 0.013 15.8 0.0 5.1 7.8 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Mad3_BUB1_I PF08311.7 gi|147919068|ref|YP_687202.1| - 0.018 14.8 2.8 11 5.8 0.0 3.0 3 0 0 3 3 3 0 Mad3/BUB1 homology region 1 TPR_10 PF13374.1 gi|147919068|ref|YP_687202.1| - 0.023 14.6 3.6 8.5 6.4 0.0 3.2 3 0 0 3 3 3 0 Tetratricopeptide repeat FAT PF02259.18 gi|147919068|ref|YP_687202.1| - 0.036 13.0 0.3 0.07 12.0 0.3 1.4 1 1 0 1 1 1 0 FAT domain TPR_9 PF13371.1 gi|147919068|ref|YP_687202.1| - 0.079 12.8 0.1 3.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat PRA-PH PF01503.12 gi|147919069|ref|YP_687201.1| - 6.3e-05 23.1 0.5 8.3e-05 22.7 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|147919069|ref|YP_687201.1| - 0.0054 16.6 2.8 0.01 15.7 2.0 1.4 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Histone_HNS PF00816.16 gi|147919069|ref|YP_687201.1| - 0.0092 16.4 0.3 0.016 15.7 0.2 1.4 1 0 0 1 1 1 1 H-NS histone family DUF507 PF04368.8 gi|147919069|ref|YP_687201.1| - 0.072 12.7 0.2 0.08 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF507) RHH_1 PF01402.16 gi|147919069|ref|YP_687201.1| - 0.1 12.5 2.8 1.8 8.5 0.0 3.2 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family ImpA-rel_N PF06812.7 gi|147919069|ref|YP_687201.1| - 0.11 12.3 0.0 6.7 6.5 0.0 2.2 2 0 0 2 2 2 0 ImpA-related N-terminal PqqD PF05402.7 gi|147919069|ref|YP_687201.1| - 0.57 10.2 2.7 3.2 7.8 1.3 2.1 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) Flavodoxin_1 PF00258.20 gi|147919070|ref|YP_687200.1| - 2.5e-15 56.7 0.0 3.6e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|147919070|ref|YP_687200.1| - 2e-08 34.3 0.0 2.4e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|147919070|ref|YP_687200.1| - 5.3e-08 32.4 0.0 8.5e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|147919070|ref|YP_687200.1| - 6.1e-08 32.3 0.1 5.6e-06 25.9 0.0 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|147919070|ref|YP_687200.1| - 7.2e-07 28.6 0.1 0.0029 16.9 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_2 PF02525.12 gi|147919070|ref|YP_687200.1| - 0.095 12.1 0.0 0.36 10.3 0.0 2.1 2 1 0 2 2 2 0 Flavodoxin-like fold LSM PF01423.17 gi|147919071|ref|YP_687199.1| - 3.7e-16 58.4 0.4 4.1e-16 58.2 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|147919071|ref|YP_687199.1| - 0.027 14.4 0.1 0.032 14.1 0.1 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain B-block_TFIIIC PF04182.7 gi|147919072|ref|YP_687198.1| - 0.0038 17.0 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|147919072|ref|YP_687198.1| - 0.0079 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|147919072|ref|YP_687198.1| - 0.063 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|147919072|ref|YP_687198.1| - 0.067 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF87 PF01935.12 gi|147919073|ref|YP_687197.1| - 2.5e-38 132.1 0.1 1.1e-37 130.1 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|147919073|ref|YP_687197.1| - 8.1e-20 71.4 0.0 8.4e-12 45.1 0.0 2.2 1 1 1 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.4 gi|147919073|ref|YP_687197.1| - 3.7e-06 25.8 0.0 0.00026 19.7 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|147919073|ref|YP_687197.1| - 4.8e-05 21.9 0.0 0.005 15.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|147919073|ref|YP_687197.1| - 0.00062 19.2 0.0 0.003 17.0 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|147919073|ref|YP_687197.1| - 0.0049 16.3 0.1 0.012 15.1 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family DEAD PF00270.24 gi|147919073|ref|YP_687197.1| - 0.0052 16.2 0.0 1.3 8.5 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase T4SS-DNA_transf PF02534.9 gi|147919073|ref|YP_687197.1| - 0.0083 14.7 0.1 0.017 13.6 0.0 1.5 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer ArgK PF03308.11 gi|147919073|ref|YP_687197.1| - 0.026 13.3 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Helicase_RecD PF05127.9 gi|147919073|ref|YP_687197.1| - 0.046 13.3 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 Helicase HAS-barrel PF09378.5 gi|147919074|ref|YP_687196.1| - 0.0088 15.9 0.3 0.016 15.0 0.2 1.4 1 0 0 1 1 1 1 HAS barrel domain NurA PF09376.5 gi|147919075|ref|YP_687195.1| - 2.3e-20 73.1 0.0 3.3e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 NurA domain AAA_23 PF13476.1 gi|147919076|ref|YP_687194.1| - 2e-21 77.2 3.0 2e-21 77.2 2.1 5.0 1 1 1 3 3 2 1 AAA domain SMC_N PF02463.14 gi|147919076|ref|YP_687194.1| - 1.5e-16 60.3 21.7 4.2e-09 35.9 0.0 2.6 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|147919076|ref|YP_687194.1| - 1.6e-12 48.0 0.1 7.2e-06 26.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|147919076|ref|YP_687194.1| - 8.3e-09 35.2 0.0 2.3e-08 33.8 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|147919076|ref|YP_687194.1| - 2.2e-06 26.9 3.9 2.2e-06 26.9 2.7 4.5 2 2 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|147919076|ref|YP_687194.1| - 1.2e-05 24.7 0.0 2.3e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|147919076|ref|YP_687194.1| - 4.8e-05 23.6 16.0 0.045 14.0 0.1 4.8 2 1 0 2 2 2 1 ABC transporter AAA_13 PF13166.1 gi|147919076|ref|YP_687194.1| - 0.058 11.8 61.7 0.095 11.1 21.8 4.2 3 1 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|147919076|ref|YP_687194.1| - 1.2 10.0 8.7 1.8 9.3 0.1 4.1 3 2 0 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|147919076|ref|YP_687194.1| - 5.8 7.2 8.7 6 7.1 0.1 3.8 3 1 0 3 3 3 0 AAA domain Reo_sigmaC PF04582.7 gi|147919076|ref|YP_687194.1| - 8.3 5.4 13.3 6.4 5.8 3.9 3.3 1 1 2 3 3 3 0 Reovirus sigma C capsid protein Metallophos PF00149.23 gi|147919077|ref|YP_687193.1| - 3.4e-12 46.1 0.3 1e-09 38.1 0.1 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|147919077|ref|YP_687193.1| - 2e-11 43.9 0.1 4.2e-11 42.9 0.1 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Tox-MPTase5 PF15641.1 gi|147919077|ref|YP_687193.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 Metallopeptidase toxin 5 DUF2250 PF10007.4 gi|147919078|ref|YP_687192.1| - 0.0012 18.6 0.4 0.0036 17.1 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) TBPIP PF07106.8 gi|147919078|ref|YP_687192.1| - 0.005 16.4 0.6 0.056 12.9 0.0 2.1 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HTH_45 PF14947.1 gi|147919078|ref|YP_687192.1| - 0.0074 16.0 0.6 0.018 14.8 0.0 2.0 3 0 0 3 3 3 1 Winged helix-turn-helix Uds1 PF15456.1 gi|147919078|ref|YP_687192.1| - 0.083 12.8 6.3 0.96 9.4 3.3 2.5 2 1 0 2 2 2 0 Up-regulated During Septation DUF2730 PF10805.3 gi|147919078|ref|YP_687192.1| - 0.15 11.8 0.9 13 5.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) HTH_12 PF08461.5 gi|147919078|ref|YP_687192.1| - 1.1 9.0 4.1 1.6 8.4 0.6 2.8 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain BPL_N PF09825.4 gi|147919079|ref|YP_687191.1| - 0.011 14.5 0.0 0.062 12.0 0.0 1.8 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal Lar_restr_allev PF14354.1 gi|147919080|ref|YP_687190.1| - 0.022 15.0 8.4 0.12 12.7 1.8 2.7 3 0 0 3 3 3 0 Restriction alleviation protein Lar Methyltransf_26 PF13659.1 gi|147919080|ref|YP_687190.1| - 0.046 13.7 0.0 0.088 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain zf-ISL3 PF14690.1 gi|147919080|ref|YP_687190.1| - 2.2 8.3 5.3 9.3 6.3 0.1 2.6 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 FMN_red PF03358.10 gi|147919081|ref|YP_687189.1| - 2.6e-34 117.9 0.0 3.2e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147919081|ref|YP_687189.1| - 1.1e-08 34.7 0.0 1.4e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|147919081|ref|YP_687189.1| - 0.0056 16.6 0.0 0.03 14.3 0.0 1.9 1 1 1 2 2 2 1 Flavodoxin domain Meth_synt_2 PF01717.13 gi|147919082|ref|YP_687187.1| - 9.4e-59 198.9 7.8 1.9e-57 194.7 5.4 2.1 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|147919082|ref|YP_687187.1| - 6e-09 35.5 0.0 2.5e-08 33.5 0.0 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|147919082|ref|YP_687187.1| - 3.4e-08 32.7 1.2 1.7e-07 30.4 0.8 2.0 1 1 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) KaiC PF06745.8 gi|147919082|ref|YP_687187.1| - 0.02 14.0 0.1 0.041 12.9 0.1 1.5 1 0 0 1 1 1 0 KaiC TM2 PF05154.11 gi|147919083|ref|YP_687186.1| - 0.00062 19.9 10.7 0.0043 17.2 7.0 2.5 1 1 0 1 1 1 1 TM2 domain DUF2207 PF09972.4 gi|147919083|ref|YP_687186.1| - 0.062 11.8 1.3 0.056 12.0 0.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) zf-B_box PF00643.19 gi|147919084|ref|YP_687185.1| - 0.00013 21.7 6.8 0.00021 21.1 1.7 2.2 2 0 0 2 2 2 1 B-box zinc finger TM2 PF05154.11 gi|147919084|ref|YP_687185.1| - 0.0016 18.6 12.8 0.011 15.8 8.8 2.4 1 1 0 1 1 1 1 TM2 domain Fer2_3 PF13085.1 gi|147919084|ref|YP_687185.1| - 0.0045 16.7 0.8 0.0062 16.3 0.6 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain zf-C2HC5 PF06221.8 gi|147919084|ref|YP_687185.1| - 0.08 12.7 9.1 0.2 11.4 6.3 1.7 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type LIM PF00412.17 gi|147919084|ref|YP_687185.1| - 0.1 12.6 5.4 0.19 11.8 3.2 1.8 2 0 0 2 2 2 0 LIM domain FYVE PF01363.16 gi|147919084|ref|YP_687185.1| - 0.18 11.7 11.0 1.8 8.5 2.9 2.2 1 1 1 2 2 2 0 FYVE zinc finger zinc-ribbons_6 PF07191.7 gi|147919084|ref|YP_687185.1| - 0.2 11.4 10.1 0.24 11.1 6.3 1.6 1 1 1 2 2 2 0 zinc-ribbons zf-C3HC4_2 PF13923.1 gi|147919084|ref|YP_687185.1| - 0.22 11.5 9.0 2.3 8.3 1.7 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-piccolo PF05715.8 gi|147919084|ref|YP_687185.1| - 0.23 11.5 8.8 0.5 10.4 6.1 1.6 1 1 0 1 1 1 0 Piccolo Zn-finger zf-C3HC4_3 PF13920.1 gi|147919084|ref|YP_687185.1| - 2 8.1 11.3 11 5.7 7.8 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_4 PF14447.1 gi|147919084|ref|YP_687185.1| - 2.7 7.5 7.5 1.6 8.3 1.9 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 Elf1 PF05129.8 gi|147919084|ref|YP_687185.1| - 3.1 7.5 8.7 4.6 7.0 6.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like TM2 PF05154.11 gi|147919085|ref|YP_687184.1| - 2.7e-08 33.8 5.2 5.6e-08 32.8 3.6 1.5 1 1 0 1 1 1 1 TM2 domain DUF2157 PF09925.4 gi|147919086|ref|YP_687183.1| - 0.044 13.3 3.1 0.045 13.3 1.1 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) TM2 PF05154.11 gi|147919086|ref|YP_687183.1| - 1.4 9.1 9.0 9.8 6.4 6.2 2.4 1 1 0 1 1 1 0 TM2 domain Keratin_assoc PF09775.4 gi|147919086|ref|YP_687183.1| - 2.8 7.5 7.8 0.31 10.5 1.6 1.7 1 1 0 1 1 1 0 Keratinocyte-associated protein 2 ABC2_membrane PF01061.19 gi|147919087|ref|YP_687182.1| - 5.2e-34 117.2 21.2 5.2e-34 117.2 14.7 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|147919087|ref|YP_687182.1| - 8.5e-09 34.8 31.6 2e-08 33.6 21.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|147919088|ref|YP_687181.1| - 1.2e-32 113.1 0.0 1.9e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919088|ref|YP_687181.1| - 5.8e-18 65.8 0.0 6e-15 55.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|147919088|ref|YP_687181.1| - 1.3e-06 28.7 0.0 3e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|147919088|ref|YP_687181.1| - 1.1e-05 24.6 0.0 0.0022 17.1 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|147919088|ref|YP_687181.1| - 0.00074 19.8 0.3 0.0013 19.1 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919088|ref|YP_687181.1| - 0.0018 17.7 0.1 0.0037 16.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|147919088|ref|YP_687181.1| - 0.0022 17.2 0.0 0.93 8.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_14 PF13173.1 gi|147919088|ref|YP_687181.1| - 0.0057 16.5 0.0 5 7.0 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|147919088|ref|YP_687181.1| - 0.0086 15.5 0.2 0.28 10.5 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|147919088|ref|YP_687181.1| - 0.019 14.8 0.0 0.07 13.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|147919088|ref|YP_687181.1| - 0.025 14.5 0.0 0.045 13.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|147919088|ref|YP_687181.1| - 0.04 13.5 0.1 0.083 12.5 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|147919088|ref|YP_687181.1| - 0.043 13.7 0.0 0.085 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|147919088|ref|YP_687181.1| - 0.043 13.9 0.7 0.44 10.6 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|147919088|ref|YP_687181.1| - 0.043 14.0 0.8 0.54 10.4 0.6 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|147919088|ref|YP_687181.1| - 0.049 13.5 0.1 0.13 12.2 0.0 1.7 2 1 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|147919088|ref|YP_687181.1| - 0.05 12.7 0.0 0.12 11.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|147919088|ref|YP_687181.1| - 0.07 12.5 0.2 0.13 11.6 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.12 gi|147919088|ref|YP_687181.1| - 0.095 12.1 0.6 11 5.3 0.0 2.9 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|147919088|ref|YP_687181.1| - 0.26 10.8 1.0 1 8.9 0.2 2.0 2 0 0 2 2 2 0 AAA domain DeoC PF01791.4 gi|147919089|ref|YP_687180.1| - 1.7e-48 165.0 0.0 1.9e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|147919089|ref|YP_687180.1| - 0.0025 16.9 0.5 0.006 15.6 0.1 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG OMPdecase PF00215.19 gi|147919089|ref|YP_687180.1| - 0.0029 17.0 0.0 0.0045 16.4 0.0 1.4 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.16 gi|147919089|ref|YP_687180.1| - 0.065 12.4 0.0 0.15 11.3 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein Pyridox_ox_2 PF12900.2 gi|147919090|ref|YP_687179.1| - 9.6e-21 74.1 0.0 1.5e-20 73.4 0.0 1.5 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|147919090|ref|YP_687179.1| - 4.3e-08 33.0 0.0 6.8e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase RNA_pol_Rpb2_5 PF04567.12 gi|147919090|ref|YP_687179.1| - 0.0055 16.6 0.1 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 HTH_5 PF01022.15 gi|147919091|ref|YP_687178.1| - 9.1e-20 70.0 0.5 2.8e-19 68.5 0.1 2.0 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147919091|ref|YP_687178.1| - 5.6e-11 42.0 0.0 8.7e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|147919091|ref|YP_687178.1| - 0.012 15.2 0.2 0.05 13.2 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|147919091|ref|YP_687178.1| - 0.015 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain SNF2_assoc PF08455.5 gi|147919091|ref|YP_687178.1| - 0.033 12.7 0.0 0.048 12.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial SNF2 helicase associated Arg_repressor PF01316.16 gi|147919091|ref|YP_687178.1| - 0.038 13.5 0.0 0.076 12.5 0.0 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain MarR PF01047.17 gi|147919091|ref|YP_687178.1| - 0.042 13.5 0.1 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|147919091|ref|YP_687178.1| - 0.13 12.6 0.0 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|147919092|ref|YP_687177.1| - 2.9e-07 30.1 0.0 4.3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|147919092|ref|YP_687177.1| - 7.6e-06 25.4 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|147919092|ref|YP_687177.1| - 7.7e-06 25.2 0.0 1.6e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147919092|ref|YP_687177.1| - 2.6e-05 23.8 0.0 5.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|147919092|ref|YP_687177.1| - 0.00092 18.9 0.1 0.0022 17.7 0.1 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.1 gi|147919092|ref|YP_687177.1| - 0.0027 17.2 0.0 0.0062 16.0 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|147919092|ref|YP_687177.1| - 0.003 17.2 0.0 0.0054 16.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|147919092|ref|YP_687177.1| - 0.016 14.8 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|147919092|ref|YP_687177.1| - 0.021 14.7 0.0 0.021 14.7 0.0 1.7 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|147919092|ref|YP_687177.1| - 0.036 13.6 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|147919092|ref|YP_687177.1| - 0.068 13.3 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HxlR PF01638.12 gi|147919092|ref|YP_687177.1| - 0.079 12.6 0.1 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.1 gi|147919092|ref|YP_687177.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|147919092|ref|YP_687177.1| - 0.15 11.6 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain DctQ PF04290.7 gi|147919092|ref|YP_687177.1| - 3.2 7.5 9.4 0.69 9.6 1.9 2.2 1 1 1 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component ABC_tran PF00005.22 gi|147919093|ref|YP_687176.1| - 1.8e-28 99.5 0.0 2.7e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919093|ref|YP_687176.1| - 4e-17 63.0 0.1 9.6e-15 55.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|147919093|ref|YP_687176.1| - 6.3e-06 25.5 0.0 0.018 14.1 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|147919093|ref|YP_687176.1| - 0.0027 17.9 0.6 0.046 13.9 0.4 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|147919093|ref|YP_687176.1| - 0.033 13.7 0.2 0.064 12.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|147919093|ref|YP_687176.1| - 0.068 13.3 0.1 0.23 11.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|147919093|ref|YP_687176.1| - 0.074 12.4 0.3 0.15 11.5 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|147919093|ref|YP_687176.1| - 0.08 12.6 1.0 0.17 11.5 0.2 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|147919093|ref|YP_687176.1| - 0.092 12.6 0.1 0.4 10.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF4527 PF15030.1 gi|147919093|ref|YP_687176.1| - 0.11 11.7 0.1 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) SMC_N PF02463.14 gi|147919093|ref|YP_687176.1| - 0.21 10.7 0.6 11 5.2 0.0 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|147919093|ref|YP_687176.1| - 0.24 11.7 5.6 0.37 11.0 3.9 1.4 1 1 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|147919094|ref|YP_687175.1| - 1e-09 37.6 21.6 1e-09 37.6 15.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147919094|ref|YP_687175.1| - 5.2e-08 32.3 31.2 1.1e-07 31.3 17.6 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147919094|ref|YP_687175.1| - 2.5e-06 26.9 29.0 5.9e-06 25.7 20.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147919094|ref|YP_687175.1| - 0.00032 19.8 27.1 0.00032 19.8 18.8 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein Acyl_transf_3 PF01757.17 gi|147919095|ref|YP_687174.1| - 0.69 8.6 11.2 0.86 8.3 7.8 1.1 1 0 0 1 1 1 0 Acyltransferase family Rax2 PF12768.2 gi|147919095|ref|YP_687174.1| - 0.82 8.8 3.8 0.35 10.0 0.4 1.8 2 0 0 2 2 2 0 Cortical protein marker for cell polarity SOR_SNZ PF01680.12 gi|147919096|ref|YP_687173.1| - 1.4e-106 354.7 8.8 2e-106 354.2 6.1 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|147919096|ref|YP_687173.1| - 6.5e-11 41.7 9.0 4.2e-08 32.5 1.1 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|147919096|ref|YP_687173.1| - 9.1e-05 21.5 1.9 0.0042 16.0 0.1 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|147919096|ref|YP_687173.1| - 0.0011 18.0 0.3 0.013 14.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.12 gi|147919096|ref|YP_687173.1| - 0.0038 16.1 0.4 0.28 9.9 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.16 gi|147919096|ref|YP_687173.1| - 0.0038 16.3 0.1 0.012 14.6 0.0 1.9 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase PcrB PF01884.12 gi|147919096|ref|YP_687173.1| - 0.0043 16.3 0.6 0.0079 15.4 0.0 1.8 2 0 0 2 2 2 1 PcrB family NMO PF03060.10 gi|147919096|ref|YP_687173.1| - 0.009 15.1 0.1 0.009 15.1 0.1 2.3 2 0 0 2 2 2 1 Nitronate monooxygenase Ribosomal_S5_C PF03719.10 gi|147919096|ref|YP_687173.1| - 0.069 12.4 0.4 0.17 11.1 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein S5, C-terminal domain Prok-JAB PF14464.1 gi|147919097|ref|YP_687172.1| - 6.4e-20 70.6 0.0 7.4e-20 70.4 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|147919097|ref|YP_687172.1| - 4.9e-11 42.3 0.0 6.1e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|147919097|ref|YP_687172.1| - 0.0079 16.0 0.0 0.0091 15.8 0.0 1.1 1 0 0 1 1 1 1 JAB-like toxin 1 DUF4329 PF14220.1 gi|147919097|ref|YP_687172.1| - 0.055 13.4 0.0 0.084 12.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4329) UPF0172 PF03665.8 gi|147919097|ref|YP_687172.1| - 0.11 11.9 0.0 0.18 11.3 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0172) DUF4398 PF14346.1 gi|147919098|ref|YP_687171.1| - 4.4e-15 55.6 34.4 7.7e-11 41.9 8.9 4.1 1 1 3 4 4 4 3 Domain of unknown function (DUF4398) DUF1180 PF06679.7 gi|147919099|ref|YP_687170.1| - 0.072 12.9 0.5 0.13 12.1 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) SIT PF15330.1 gi|147919099|ref|YP_687170.1| - 0.087 12.9 0.3 3.2 7.9 0.0 2.6 2 1 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT FAP PF07174.6 gi|147919099|ref|YP_687170.1| - 0.24 10.6 7.4 0.11 11.8 3.4 1.5 2 0 0 2 2 2 0 Fibronectin-attachment protein (FAP) HhH-GPD PF00730.20 gi|147919100|ref|YP_687169.1| - 5.9e-20 71.5 0.0 8.6e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|147919100|ref|YP_687169.1| - 1.3e-06 27.7 0.1 5e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|147919100|ref|YP_687169.1| - 8.1e-05 22.7 0.1 0.016 15.3 0.1 2.5 1 1 0 1 1 1 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|147919100|ref|YP_687169.1| - 0.0013 18.7 0.4 0.0013 18.7 0.3 2.8 3 0 0 3 3 3 1 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|147919100|ref|YP_687169.1| - 0.011 15.4 0.0 0.028 14.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Na_H_Exchanger PF00999.16 gi|147919101|ref|YP_687168.1| - 1.1e-71 241.3 56.5 1.4e-71 241.0 39.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|147919101|ref|YP_687168.1| - 2.7e-24 85.3 0.4 4.6e-24 84.6 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|147919101|ref|YP_687168.1| - 3.9e-16 58.3 0.0 9.6e-16 57.1 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain Aminotran_1_2 PF00155.16 gi|147919102|ref|YP_687166.1| - 3.4e-65 220.3 0.0 3.8e-65 220.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|147919102|ref|YP_687166.1| - 6e-06 24.7 0.0 1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|147919102|ref|YP_687166.1| - 2.9e-05 23.3 0.0 4.3e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|147919102|ref|YP_687166.1| - 9.5e-05 21.2 0.0 0.00014 20.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Phage_tail_T PF06223.7 gi|147919102|ref|YP_687166.1| - 0.075 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Minor tail protein T DMRL_synthase PF00885.14 gi|147919103|ref|YP_687165.1| - 2.8e-35 121.1 0.3 3.1e-35 120.9 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Metallophos_3 PF14582.1 gi|147919103|ref|YP_687165.1| - 0.058 12.5 0.6 2.7 7.0 0.1 2.4 2 1 1 3 3 3 0 Metallophosphoesterase, calcineurin superfamily DMRL_synthase PF00885.14 gi|147919104|ref|YP_687164.1| - 1.8e-18 66.5 0.1 2.1e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_5 PF00266.14 gi|147919105|ref|YP_687163.1| - 2e-39 135.4 0.0 2.5e-39 135.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|147919105|ref|YP_687163.1| - 0.00019 19.8 0.0 0.00029 19.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.16 gi|147919105|ref|YP_687163.1| - 0.00078 18.3 0.0 0.31 9.8 0.0 2.4 2 0 0 2 2 2 2 Aminotransferase class-III CbiX PF01903.12 gi|147919106|ref|YP_687162.1| - 6.5e-23 80.8 0.0 8.6e-12 45.1 0.0 2.3 2 0 0 2 2 2 2 CbiX B12-binding PF02310.14 gi|147919106|ref|YP_687162.1| - 0.0033 17.2 0.1 0.015 15.1 0.0 2.0 2 1 0 2 2 2 1 B12 binding domain DUF2493 PF10686.4 gi|147919106|ref|YP_687162.1| - 0.026 14.0 0.0 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2493) zf-B_box PF00643.19 gi|147919107|ref|YP_687161.1| - 0.00078 19.2 5.4 0.004 17.0 0.8 2.3 2 0 0 2 2 2 1 B-box zinc finger LIM PF00412.17 gi|147919107|ref|YP_687161.1| - 0.012 15.6 6.3 0.019 15.0 2.2 2.0 1 1 1 2 2 2 0 LIM domain Tnp_zf-ribbon_2 PF13842.1 gi|147919107|ref|YP_687161.1| - 0.018 15.4 1.9 0.018 15.4 1.3 2.4 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF35_N PF12172.3 gi|147919107|ref|YP_687161.1| - 0.033 14.0 3.1 0.95 9.4 0.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FYVE PF01363.16 gi|147919107|ref|YP_687161.1| - 0.036 13.9 6.7 0.13 12.1 2.9 2.1 1 1 1 2 2 2 0 FYVE zinc finger DZR PF12773.2 gi|147919107|ref|YP_687161.1| - 0.046 13.5 7.0 0.13 12.0 3.7 2.0 1 1 0 1 1 1 0 Double zinc ribbon TerY-C PF15616.1 gi|147919107|ref|YP_687161.1| - 0.074 12.9 4.0 0.086 12.7 2.8 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain zf-AN1 PF01428.11 gi|147919107|ref|YP_687161.1| - 0.083 12.7 1.9 0.083 12.7 1.3 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger RNA_pol_N PF01194.12 gi|147919107|ref|YP_687161.1| - 0.13 12.2 4.7 0.19 11.7 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases N / 8 kDa subunit zf-Sec23_Sec24 PF04810.10 gi|147919107|ref|YP_687161.1| - 0.21 11.2 0.1 0.21 11.2 0.1 1.9 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger DUF2039 PF10217.4 gi|147919107|ref|YP_687161.1| - 0.25 11.3 4.2 3.9 7.5 0.3 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) C1_1 PF00130.17 gi|147919107|ref|YP_687161.1| - 0.27 10.9 5.2 3.6 7.4 1.2 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|147919107|ref|YP_687161.1| - 0.35 10.6 6.3 1.1 9.1 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbons zf-C2HC5 PF06221.8 gi|147919107|ref|YP_687161.1| - 0.42 10.3 7.8 0.53 10.0 2.2 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.1 gi|147919107|ref|YP_687161.1| - 0.71 9.4 3.3 23 4.6 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf-trcl PF13451.1 gi|147919107|ref|YP_687161.1| - 0.9 9.2 7.9 3.9 7.1 0.1 3.2 3 1 0 3 3 3 0 Probable zinc-binding domain Mu-like_Com PF10122.4 gi|147919107|ref|YP_687161.1| - 0.92 8.6 3.5 0.32 10.0 0.5 1.7 2 0 0 2 2 2 0 Mu-like prophage protein Com YhfH PF14149.1 gi|147919107|ref|YP_687161.1| - 1.5 8.6 10.1 7.5 6.4 0.0 3.2 2 1 0 2 2 2 0 YhfH-like protein zf-dskA_traR PF01258.12 gi|147919107|ref|YP_687161.1| - 2 8.2 11.5 28 4.5 0.1 3.3 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|147919107|ref|YP_687161.1| - 3.7 6.8 8.6 3.4 6.9 1.2 2.7 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_5 PF14634.1 gi|147919107|ref|YP_687161.1| - 6 6.6 7.0 60 3.4 4.9 2.1 1 1 0 1 1 1 0 zinc-RING finger domain zf-UBR PF02207.15 gi|147919107|ref|YP_687161.1| - 6 6.6 7.7 32 4.3 5.5 2.1 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Ribosomal_S27e PF01667.12 gi|147919107|ref|YP_687161.1| - 6.1 6.4 11.1 7.9 6.1 3.7 2.9 2 1 1 3 3 3 0 Ribosomal protein S27 DUF362 PF04015.7 gi|147919108|ref|YP_687160.1| - 1.8e-27 96.2 0.0 2.4e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lactamase_B_3 PF13483.1 gi|147919109|ref|YP_687159.1| - 2e-23 82.8 0.1 2.6e-23 82.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|147919109|ref|YP_687159.1| - 3.5e-16 59.3 0.1 4.4e-16 59.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147919109|ref|YP_687159.1| - 7.3e-09 35.5 0.9 9e-09 35.2 0.6 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peripla_BP_4 PF13407.1 gi|147919109|ref|YP_687159.1| - 0.06 12.6 0.1 0.085 12.1 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain Fe-ADH PF00465.14 gi|147919110|ref|YP_687158.1| - 4.6e-116 387.4 0.0 5.1e-116 387.2 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|147919110|ref|YP_687158.1| - 9.8e-24 84.0 0.9 2.6e-13 49.8 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Peripla_BP_6 PF13458.1 gi|147919110|ref|YP_687158.1| - 0.01 15.1 0.0 0.027 13.8 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein DUF2960 PF11173.3 gi|147919110|ref|YP_687158.1| - 0.031 14.5 0.1 0.062 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2960) HATPase_c PF02518.21 gi|147919111|ref|YP_687157.1| - 5e-20 71.2 0.0 1e-19 70.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|147919111|ref|YP_687157.1| - 4.8e-08 32.5 0.0 1.3e-07 31.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147919111|ref|YP_687157.1| - 8.6e-08 31.9 0.0 2.2e-07 30.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|147919111|ref|YP_687157.1| - 2.1e-07 31.2 0.0 1.8e-06 28.2 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|147919111|ref|YP_687157.1| - 5.4e-06 26.1 0.0 1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|147919111|ref|YP_687157.1| - 0.00026 20.9 0.0 0.00054 19.9 0.0 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|147919111|ref|YP_687157.1| - 0.034 13.8 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HTH_24 PF13412.1 gi|147919112|ref|YP_687156.1| - 1.6e-16 59.4 0.0 3.2e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|147919112|ref|YP_687156.1| - 1.3e-15 56.6 0.4 2.1e-15 55.9 0.3 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|147919112|ref|YP_687156.1| - 7.9e-08 31.8 0.1 1.4e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 AsnC family MarR_2 PF12802.2 gi|147919112|ref|YP_687156.1| - 1.8e-07 30.6 0.1 3.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|147919112|ref|YP_687156.1| - 5.2e-07 29.3 0.0 1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|147919112|ref|YP_687156.1| - 5.4e-06 26.1 0.0 8.9e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|147919112|ref|YP_687156.1| - 8.9e-05 22.0 0.1 0.00017 21.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.17 gi|147919112|ref|YP_687156.1| - 0.00012 21.7 0.0 0.00033 20.2 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_39 PF14090.1 gi|147919112|ref|YP_687156.1| - 0.0004 19.7 0.1 0.0013 18.1 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|147919112|ref|YP_687156.1| - 0.00076 19.4 0.1 0.0012 18.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|147919112|ref|YP_687156.1| - 0.0011 18.5 0.1 0.0037 16.8 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_CodY PF08222.6 gi|147919112|ref|YP_687156.1| - 0.0017 17.6 0.1 0.003 16.8 0.1 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain TrmB PF01978.14 gi|147919112|ref|YP_687156.1| - 0.002 17.7 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|147919112|ref|YP_687156.1| - 0.0044 16.4 0.0 0.0081 15.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DDRGK PF09756.4 gi|147919112|ref|YP_687156.1| - 0.011 15.1 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain TFIIE_alpha PF02002.12 gi|147919112|ref|YP_687156.1| - 0.013 15.0 0.1 0.025 14.0 0.0 1.5 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_IclR PF09339.5 gi|147919112|ref|YP_687156.1| - 0.018 14.5 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.16 gi|147919112|ref|YP_687156.1| - 0.024 14.0 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|147919112|ref|YP_687156.1| - 0.028 14.5 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|147919112|ref|YP_687156.1| - 0.029 14.2 0.0 0.073 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HxlR PF01638.12 gi|147919112|ref|YP_687156.1| - 0.046 13.3 0.0 0.1 12.2 0.0 1.6 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|147919112|ref|YP_687156.1| - 0.055 13.1 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|147919112|ref|YP_687156.1| - 0.057 13.5 0.1 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_10 PF04967.7 gi|147919112|ref|YP_687156.1| - 0.077 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_30 PF13556.1 gi|147919112|ref|YP_687156.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain AdoHcyase PF05221.12 gi|147919113|ref|YP_687155.1| - 2.7e-68 229.8 1.2 3e-68 229.6 0.8 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|147919113|ref|YP_687155.1| - 4.4e-54 182.7 1.1 8.7e-54 181.7 0.8 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|147919113|ref|YP_687155.1| - 4.1e-11 42.3 1.2 6.9e-11 41.6 0.2 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|147919113|ref|YP_687155.1| - 1.4e-09 37.5 1.1 4.5e-09 35.8 0.1 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|147919113|ref|YP_687155.1| - 0.00037 20.4 0.6 0.0036 17.2 0.0 2.6 2 0 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|147919113|ref|YP_687155.1| - 0.0013 18.2 0.6 0.0035 16.9 0.4 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|147919113|ref|YP_687155.1| - 0.0025 17.7 0.1 0.047 13.5 0.3 2.6 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DUF364 PF04016.7 gi|147919113|ref|YP_687155.1| - 0.0081 15.4 0.0 0.037 13.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF364) adh_short_C2 PF13561.1 gi|147919113|ref|YP_687155.1| - 0.0087 15.8 0.3 0.13 12.0 0.0 2.2 1 1 1 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Pyr_redox PF00070.22 gi|147919113|ref|YP_687155.1| - 0.009 16.3 3.7 0.19 12.1 0.4 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|147919113|ref|YP_687155.1| - 0.01 16.0 1.8 0.082 13.1 0.1 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|147919113|ref|YP_687155.1| - 0.021 14.4 1.2 0.021 14.4 0.8 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Complex1_LYR PF05347.10 gi|147919113|ref|YP_687155.1| - 0.077 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Complex 1 protein (LYR family) PfkB PF00294.19 gi|147919114|ref|YP_687154.1| - 1.8e-30 106.1 0.0 6.2e-30 104.3 0.0 1.7 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|147919114|ref|YP_687154.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase RAP1 PF07218.6 gi|147919114|ref|YP_687154.1| - 0.11 10.5 0.1 0.15 10.0 0.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) APH PF01636.18 gi|147919115|ref|YP_687153.1| - 1.2e-07 31.6 0.4 2.1e-07 30.9 0.3 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|147919115|ref|YP_687153.1| - 0.039 13.0 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase RIO1 PF01163.17 gi|147919115|ref|YP_687153.1| - 0.047 13.0 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 RIO1 family APS_kinase PF01583.15 gi|147919116|ref|YP_687152.1| - 2e-31 108.7 0.0 2.7e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|147919116|ref|YP_687152.1| - 5.4e-13 49.0 0.0 6.7e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|147919116|ref|YP_687152.1| - 2.4e-10 40.7 0.0 3.4e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|147919116|ref|YP_687152.1| - 5.6e-09 35.5 0.0 6.9e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|147919116|ref|YP_687152.1| - 6.7e-09 36.6 0.0 9.4e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|147919116|ref|YP_687152.1| - 7.6e-06 25.1 0.0 2.6e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 Zeta toxin CPT PF07931.7 gi|147919116|ref|YP_687152.1| - 0.00049 19.7 0.2 0.0063 16.1 0.1 2.5 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_16 PF13191.1 gi|147919116|ref|YP_687152.1| - 0.0013 18.7 0.0 0.0019 18.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|147919116|ref|YP_687152.1| - 0.0023 17.6 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|147919116|ref|YP_687152.1| - 0.0038 17.4 0.0 0.007 16.5 0.0 1.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|147919116|ref|YP_687152.1| - 0.0081 16.2 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|147919116|ref|YP_687152.1| - 0.011 15.2 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|147919116|ref|YP_687152.1| - 0.012 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_14 PF13173.1 gi|147919116|ref|YP_687152.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|147919116|ref|YP_687152.1| - 0.014 14.1 0.0 0.02 13.6 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|147919116|ref|YP_687152.1| - 0.019 14.4 0.0 0.054 12.9 0.0 1.5 1 1 1 2 2 2 0 AAA-like domain 6PF2K PF01591.13 gi|147919116|ref|YP_687152.1| - 0.021 13.9 0.0 0.069 12.2 0.0 1.7 1 1 0 1 1 1 0 6-phosphofructo-2-kinase Thymidylate_kin PF02223.12 gi|147919116|ref|YP_687152.1| - 0.022 14.1 0.3 0.066 12.5 0.1 1.9 1 1 1 2 2 2 0 Thymidylate kinase PRK PF00485.13 gi|147919116|ref|YP_687152.1| - 0.1 12.1 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_28 PF13521.1 gi|147919116|ref|YP_687152.1| - 0.14 12.1 0.6 0.49 10.3 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|147919116|ref|YP_687152.1| - 0.25 11.1 2.1 0.75 9.5 1.4 2.0 1 1 0 1 1 1 0 Part of AAA domain Inositol_P PF00459.20 gi|147919117|ref|YP_687151.1| - 9.7e-25 87.3 0.0 1.4e-24 86.8 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|147919117|ref|YP_687151.1| - 0.00012 21.0 0.0 0.00016 20.5 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Flavoprotein PF02441.14 gi|147919119|ref|YP_687148.1| - 1.4e-20 73.3 0.0 1.9e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.22 gi|147919119|ref|YP_687148.1| - 3.9e-05 23.0 10.5 0.00013 21.3 0.5 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919119|ref|YP_687148.1| - 0.0021 18.7 10.9 0.0027 18.4 0.1 2.6 2 1 1 3 3 3 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|147919119|ref|YP_687148.1| - 0.0035 17.1 10.8 0.0064 16.3 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147919119|ref|YP_687148.1| - 0.0042 16.8 15.0 0.0057 16.4 0.7 2.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919119|ref|YP_687148.1| - 0.0049 17.2 1.1 0.0049 17.2 0.7 2.4 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919119|ref|YP_687148.1| - 0.0059 16.9 3.9 0.1 12.9 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919119|ref|YP_687148.1| - 0.013 16.0 9.5 0.28 11.7 0.2 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_10 PF13237.1 gi|147919119|ref|YP_687148.1| - 0.035 13.8 12.9 0.12 12.2 9.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919119|ref|YP_687148.1| - 0.041 13.9 5.3 0.14 12.2 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919119|ref|YP_687148.1| - 0.33 11.2 14.7 0.09 13.0 1.3 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain PAP2 PF01569.16 gi|147919120|ref|YP_687147.1| - 2.7e-25 88.5 3.5 2.7e-25 88.5 2.4 2.8 2 1 1 3 3 3 2 PAP2 superfamily PAP2_3 PF14378.1 gi|147919120|ref|YP_687147.1| - 2.6e-05 23.8 0.9 2.6e-05 23.8 0.6 2.4 3 0 0 3 3 3 1 PAP2 superfamily GCC2_GCC3 PF07699.8 gi|147919124|ref|YP_687143.1| - 0.023 14.2 2.6 0.18 11.4 0.7 2.4 2 0 0 2 2 2 0 GCC2 and GCC3 Med27 PF11571.3 gi|147919124|ref|YP_687143.1| - 0.087 12.9 0.5 3.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Mediator complex subunit 27 zf-NADH-PPase PF09297.6 gi|147919124|ref|YP_687143.1| - 0.19 11.2 8.0 5.7 6.5 0.1 3.4 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.1 gi|147919124|ref|YP_687143.1| - 0.24 11.3 2.0 0.28 11.1 0.2 1.9 2 0 0 2 2 2 0 CpXC protein zf-dskA_traR PF01258.12 gi|147919124|ref|YP_687143.1| - 0.85 9.4 0.1 0.85 9.4 0.1 3.9 5 0 0 5 5 5 0 Prokaryotic dksA/traR C4-type zinc finger HypA PF01155.14 gi|147919124|ref|YP_687143.1| - 1.3 8.7 4.7 2.3 7.9 0.4 2.6 3 1 0 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|147919124|ref|YP_687143.1| - 2 7.7 11.4 2.8 7.2 2.6 3.1 3 1 0 3 3 3 0 zinc-ribbon domain DUF329 PF03884.9 gi|147919124|ref|YP_687143.1| - 2.4 7.7 6.2 11 5.7 0.4 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF329) Lar_restr_allev PF14354.1 gi|147919124|ref|YP_687143.1| - 4.9 7.5 8.6 2.9 8.2 0.2 3.1 2 1 1 3 3 3 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|147919124|ref|YP_687143.1| - 6 6.4 7.5 64 3.2 0.0 3.2 2 1 0 2 2 2 0 zinc-ribbon domain PvlArgDC PF01862.11 gi|147919125|ref|YP_687142.1| - 3.7e-66 221.7 0.0 4.1e-66 221.6 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) PAPS_reduct PF01507.14 gi|147919126|ref|YP_687141.1| - 6.9e-47 159.4 0.0 1e-46 158.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|147919126|ref|YP_687141.1| - 9e-05 22.7 11.9 9e-05 22.7 8.3 2.6 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919126|ref|YP_687141.1| - 0.00021 21.0 12.0 0.00021 21.0 8.3 2.4 3 0 0 3 3 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919126|ref|YP_687141.1| - 0.00076 19.2 3.1 0.00076 19.2 2.2 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919126|ref|YP_687141.1| - 0.0013 18.5 3.0 0.0013 18.5 2.1 3.8 4 1 0 4 4 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|147919126|ref|YP_687141.1| - 0.002 17.6 2.7 0.002 17.6 1.9 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147919126|ref|YP_687141.1| - 0.002 18.4 6.3 0.71 10.2 1.0 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919126|ref|YP_687141.1| - 0.0023 17.9 8.6 0.042 13.8 0.8 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Asn_synthase PF00733.16 gi|147919126|ref|YP_687141.1| - 0.0024 17.3 0.0 0.0043 16.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase LGFP PF08310.6 gi|147919126|ref|YP_687141.1| - 0.035 13.7 0.2 2 8.1 0.0 2.5 2 0 0 2 2 2 0 LGFP repeat ATP_bind_3 PF01171.15 gi|147919126|ref|YP_687141.1| - 0.043 13.3 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Fer4_16 PF13484.1 gi|147919126|ref|YP_687141.1| - 5.7 7.7 19.7 6e+02 1.2 11.1 3.3 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain UPF0047 PF01894.12 gi|147919127|ref|YP_687140.1| - 9.7e-35 118.9 0.0 1.1e-34 118.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Rubrerythrin PF02915.12 gi|147919128|ref|YP_687139.1| - 1e-07 32.3 0.3 1.4e-07 31.8 0.2 1.2 1 0 0 1 1 1 1 Rubrerythrin TPR_12 PF13424.1 gi|147919129|ref|YP_687138.1| - 1.1e-05 25.3 15.0 0.51 10.3 1.6 5.5 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147919129|ref|YP_687138.1| - 2.3e-05 23.9 12.4 0.0057 16.2 0.6 4.6 1 1 5 6 6 6 3 TPR repeat TPR_2 PF07719.12 gi|147919129|ref|YP_687138.1| - 2.4e-05 23.8 17.2 0.067 13.1 0.6 6.1 5 1 1 6 6 6 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|147919129|ref|YP_687138.1| - 0.00044 20.0 8.5 0.16 11.7 0.1 3.8 2 1 0 3 3 2 2 Domain of Unknown Function (DUF3856) TPR_14 PF13428.1 gi|147919129|ref|YP_687138.1| - 0.00052 20.4 4.7 15 6.5 0.5 5.5 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919129|ref|YP_687138.1| - 0.00052 19.5 12.5 2 8.4 1.1 6.3 6 1 0 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919129|ref|YP_687138.1| - 0.0076 16.8 13.2 0.38 11.5 0.6 4.8 4 1 1 5 5 5 1 Tetratricopeptide repeat MIT PF04212.13 gi|147919129|ref|YP_687138.1| - 0.0078 16.0 10.2 0.069 13.0 0.4 4.8 5 1 0 5 5 5 1 MIT (microtubule interacting and transport) domain DUF2826 PF11442.3 gi|147919129|ref|YP_687138.1| - 0.028 14.0 0.0 0.077 12.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2826) Apc3 PF12895.2 gi|147919129|ref|YP_687138.1| - 0.048 13.7 9.2 4 7.6 0.7 4.2 2 2 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.23 gi|147919129|ref|YP_687138.1| - 0.049 13.2 19.8 0.19 11.3 0.5 5.7 5 1 1 6 6 6 0 Tetratricopeptide repeat SNAP PF14938.1 gi|147919129|ref|YP_687138.1| - 0.085 11.9 11.3 0.27 10.3 3.0 3.1 2 1 1 3 3 3 0 Soluble NSF attachment protein, SNAP HrpB7 PF09486.5 gi|147919129|ref|YP_687138.1| - 0.2 11.5 0.1 0.2 11.5 0.1 2.2 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) TPR_19 PF14559.1 gi|147919129|ref|YP_687138.1| - 0.2 12.0 8.5 1.8 8.9 0.4 3.7 3 2 0 3 3 3 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919129|ref|YP_687138.1| - 0.22 11.3 8.8 15 5.6 0.0 5.4 4 1 1 5 5 5 0 Tetratricopeptide repeat RDD PF06271.7 gi|147919129|ref|YP_687138.1| - 7 6.5 10.9 1.6 8.6 4.5 2.1 1 1 1 2 2 2 0 RDD family Tetraspannin PF00335.15 gi|147919129|ref|YP_687138.1| - 8.5 5.5 13.7 3.7 6.7 5.8 2.1 2 0 0 2 2 2 0 Tetraspanin family Radical_SAM PF04055.16 gi|147919130|ref|YP_687137.1| - 7.2e-19 68.5 0.0 1.5e-18 67.5 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|147919130|ref|YP_687137.1| - 3.5e-10 39.7 0.2 1e-09 38.3 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|147919130|ref|YP_687137.1| - 6.2e-05 23.0 0.2 0.00018 21.6 0.1 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147919130|ref|YP_687137.1| - 0.017 15.2 0.4 0.067 13.3 0.3 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M24 PF00557.19 gi|147919131|ref|YP_687136.1| - 3.9e-45 153.9 0.2 5.1e-45 153.6 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Peptidase_M24 PF00557.19 gi|147919132|ref|YP_687135.1| - 8.2e-43 146.4 0.3 9.5e-43 146.1 0.2 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF63 PF01889.12 gi|147919133|ref|YP_687134.1| - 0.24 11.4 1.9 0.34 10.9 1.3 1.2 1 0 0 1 1 1 0 Membrane protein of unknown function DUF63 PAS_3 PF08447.6 gi|147919134|ref|YP_687133.1| - 4.7e-16 58.6 0.0 1.2e-14 54.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|147919134|ref|YP_687133.1| - 7.4e-16 57.8 0.0 5.8e-15 54.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147919134|ref|YP_687133.1| - 3.5e-15 56.2 0.0 5.8e-08 33.0 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|147919134|ref|YP_687133.1| - 3.7e-15 55.6 0.0 1.9e-06 27.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|147919134|ref|YP_687133.1| - 2.4e-07 30.7 0.0 0.0018 18.2 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|147919134|ref|YP_687133.1| - 2.5e-06 27.1 0.0 1.6e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|147919134|ref|YP_687133.1| - 0.023 14.3 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF615 PF04751.9 gi|147919134|ref|YP_687133.1| - 0.057 13.0 0.2 3 7.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF615) HisG PF01634.13 gi|147919134|ref|YP_687133.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 ATP phosphoribosyltransferase ATP_bind_4 PF01902.12 gi|147919135|ref|YP_687132.1| - 7.4e-72 241.2 0.0 8.2e-72 241.1 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|147919135|ref|YP_687132.1| - 0.0001 21.8 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|147919135|ref|YP_687132.1| - 0.056 12.7 0.0 0.085 12.1 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|147919135|ref|YP_687132.1| - 0.059 11.9 0.0 0.078 11.5 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase Amidohydro_1 PF01979.15 gi|147919136|ref|YP_687131.1| - 1.2e-32 113.8 0.3 1.8e-32 113.3 0.2 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|147919136|ref|YP_687131.1| - 8.7e-06 25.4 0.0 2.9e-05 23.7 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|147919136|ref|YP_687131.1| - 3.3e-05 24.0 0.1 0.019 15.0 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase A_deaminase PF00962.17 gi|147919136|ref|YP_687131.1| - 0.00036 19.5 0.0 0.003 16.5 0.0 2.0 2 0 0 2 2 2 1 Adenosine/AMP deaminase MFS_1 PF07690.11 gi|147919137|ref|YP_687130.1| - 7.5e-57 192.6 55.6 3e-41 141.3 16.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147919137|ref|YP_687130.1| - 4.6e-17 61.5 26.6 2.7e-11 42.5 9.0 2.1 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|147919137|ref|YP_687130.1| - 2.5e-09 35.8 29.1 3.7e-09 35.2 20.2 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|147919137|ref|YP_687130.1| - 4.1e-09 35.5 9.3 4.1e-09 35.5 6.4 3.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|147919137|ref|YP_687130.1| - 3.9e-07 29.7 8.3 0.0013 18.4 0.5 3.4 3 1 0 3 3 3 2 MFS_1 like family LacY_symp PF01306.14 gi|147919137|ref|YP_687130.1| - 1.2e-06 27.3 17.0 0.00099 17.7 5.0 2.9 2 2 1 3 3 3 2 LacY proton/sugar symporter DUF697 PF05128.7 gi|147919137|ref|YP_687130.1| - 6.3 6.2 10.5 1.2 8.6 0.7 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF697) OATP PF03137.15 gi|147919137|ref|YP_687130.1| - 8.5 4.2 8.3 4.6 5.1 0.6 2.5 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family TetR_N PF00440.18 gi|147919138|ref|YP_687129.1| - 3.3e-19 68.2 0.2 5.8e-19 67.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_2 PF08361.6 gi|147919138|ref|YP_687129.1| - 1.1e-07 31.8 0.1 1.5e-07 31.3 0.1 1.2 1 0 0 1 1 1 1 MAATS-type transcriptional repressor, C-terminal region TetR_C_6 PF13977.1 gi|147919138|ref|YP_687129.1| - 0.00047 20.1 0.0 0.00093 19.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional repressor WHG PF13305.1 gi|147919138|ref|YP_687129.1| - 0.028 14.9 0.0 0.41 11.2 0.0 2.4 1 1 1 2 2 2 0 WHG domain TetR_C_4 PF08359.6 gi|147919138|ref|YP_687129.1| - 0.078 12.9 0.0 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region LacI PF00356.16 gi|147919138|ref|YP_687129.1| - 0.12 12.0 0.1 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family DUF4355 PF14265.1 gi|147919138|ref|YP_687129.1| - 0.24 11.3 2.5 0.36 10.7 0.0 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4355) ACT_7 PF13840.1 gi|147919139|ref|YP_687128.1| - 1e-23 82.5 0.0 1.6e-23 81.9 0.0 1.3 1 0 0 1 1 1 1 ACT domain Transglut_core PF01841.14 gi|147919140|ref|YP_687127.1| - 3.8e-07 30.2 0.0 5.9e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|147919140|ref|YP_687127.1| - 0.058 12.6 0.0 0.073 12.3 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase-like domain Aminotran_1_2 PF00155.16 gi|147919141|ref|YP_687126.1| - 6.5e-33 114.1 0.0 7.9e-33 113.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|147919141|ref|YP_687126.1| - 6.2e-09 34.9 0.0 1.2e-08 33.9 0.0 1.5 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase GATase PF00117.23 gi|147919142|ref|YP_687125.1| - 4.8e-21 75.0 0.0 6.6e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I DUF4066 PF13278.1 gi|147919142|ref|YP_687125.1| - 0.0004 19.6 0.0 0.0006 19.1 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|147919142|ref|YP_687125.1| - 0.0011 18.3 0.0 0.0041 16.5 0.0 1.8 2 1 0 2 2 2 1 Peptidase C26 HTS PF04204.11 gi|147919142|ref|YP_687125.1| - 0.012 14.3 0.0 0.013 14.2 0.0 1.1 1 0 0 1 1 1 0 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|147919142|ref|YP_687125.1| - 0.02 14.5 0.0 0.047 13.2 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain C_GCAxxG_C_C PF09719.5 gi|147919143|ref|YP_687124.1| - 1.7e-32 111.7 3.8 2e-32 111.5 2.7 1.0 1 0 0 1 1 1 1 Putative redox-active protein (C_GCAxxG_C_C) DnaB_bind PF10410.4 gi|147919143|ref|YP_687124.1| - 0.025 14.5 0.0 0.063 13.2 0.0 1.6 2 0 0 2 2 2 0 DnaB-helicase binding domain of primase Hormone_5 PF00184.12 gi|147919143|ref|YP_687124.1| - 3 8.4 5.6 1.4 9.5 0.2 2.7 2 1 0 2 2 2 0 Neurohypophysial hormones, C-terminal Domain PhzC-PhzF PF02567.11 gi|147919144|ref|YP_687123.1| - 3.4e-57 193.8 0.0 3.8e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Acetyltransf_1 PF00583.19 gi|147919145|ref|YP_687122.1| - 3.8e-16 58.8 0.0 5.3e-16 58.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|147919145|ref|YP_687122.1| - 2.3e-12 47.1 0.0 3.1e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147919145|ref|YP_687122.1| - 2.9e-11 43.7 0.0 3.6e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147919145|ref|YP_687122.1| - 8.6e-11 41.9 0.0 1.1e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147919145|ref|YP_687122.1| - 4.8e-09 36.2 0.0 7.6e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147919145|ref|YP_687122.1| - 4.6e-07 29.8 0.0 6.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147919145|ref|YP_687122.1| - 9.3e-06 25.5 0.0 1.6e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147919145|ref|YP_687122.1| - 9.7e-05 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|147919145|ref|YP_687122.1| - 0.00014 21.6 0.0 0.0003 20.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|147919145|ref|YP_687122.1| - 0.033 14.1 0.0 0.071 13.0 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FrhB_FdhB_C PF04432.8 gi|147919147|ref|YP_687120.1| - 1.3e-37 128.7 0.0 1.3e-37 128.7 0.0 2.0 2 1 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147919147|ref|YP_687120.1| - 3.5e-20 71.6 0.1 6.6e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_10 PF13237.1 gi|147919147|ref|YP_687120.1| - 1.4e-06 28.0 11.8 1.4e-06 28.0 8.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919147|ref|YP_687120.1| - 3.2e-05 24.1 13.0 3.2e-05 24.1 9.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919147|ref|YP_687120.1| - 3.4e-05 24.1 13.4 3.4e-05 24.1 9.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919147|ref|YP_687120.1| - 0.00014 21.5 18.4 0.00081 19.1 1.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147919147|ref|YP_687120.1| - 0.00077 19.6 16.9 0.041 14.2 1.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919147|ref|YP_687120.1| - 0.00092 19.0 19.2 0.031 14.1 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919147|ref|YP_687120.1| - 0.0018 18.0 13.7 0.0018 18.0 9.5 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919147|ref|YP_687120.1| - 0.0022 17.5 21.7 0.004 16.6 1.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919147|ref|YP_687120.1| - 0.0061 17.2 14.1 0.69 10.7 1.7 3.1 2 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|147919147|ref|YP_687120.1| - 0.076 13.0 16.5 0.21 11.6 2.3 2.6 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919147|ref|YP_687120.1| - 0.33 11.3 16.5 0.84 10.0 1.7 3.0 3 1 3 6 6 5 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919147|ref|YP_687120.1| - 0.67 10.6 25.3 0.29 11.8 3.6 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147919147|ref|YP_687120.1| - 0.85 10.0 22.0 0.14 12.5 2.5 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919147|ref|YP_687120.1| - 4.5 7.9 13.3 1.7 9.2 1.4 3.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain Tubulin PF00091.20 gi|147919148|ref|YP_687119.1| - 1.1e-26 93.9 0.1 3.6e-26 92.3 0.0 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|147919148|ref|YP_687119.1| - 1.4e-14 53.8 0.0 3.5e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|147919148|ref|YP_687119.1| - 0.034 13.9 2.1 0.036 13.8 0.0 2.0 2 0 0 2 2 2 0 ThiF family ThiC PF01964.13 gi|147919149|ref|YP_687118.1| - 2.7e-183 609.3 0.6 3e-183 609.1 0.4 1.0 1 0 0 1 1 1 1 ThiC family DNA_pol_A PF00476.15 gi|147919149|ref|YP_687118.1| - 0.075 11.6 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase family A Metallophos_2 PF12850.2 gi|147919150|ref|YP_687117.1| - 2.7e-37 128.0 0.0 3.3e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147919150|ref|YP_687117.1| - 5.5e-12 45.5 1.8 1e-11 44.6 1.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PhoU PF01895.14 gi|147919151|ref|YP_684874.1| - 5e-30 103.8 7.1 6.7e-17 61.7 0.6 2.1 2 0 0 2 2 2 2 PhoU domain CCDC50_N PF15295.1 gi|147919151|ref|YP_684874.1| - 0.011 15.6 0.7 0.21 11.5 0.1 2.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 50 N-terminus ABC_tran PF00005.22 gi|147919152|ref|YP_687115.1| - 1.4e-29 103.1 0.0 2.1e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919152|ref|YP_687115.1| - 7.5e-12 45.8 0.0 4.3e-06 26.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919152|ref|YP_687115.1| - 2.2e-08 33.6 0.1 0.00024 20.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|147919152|ref|YP_687115.1| - 3.1e-05 24.0 0.1 0.039 13.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|147919152|ref|YP_687115.1| - 0.00019 21.5 0.2 0.0018 18.4 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|147919152|ref|YP_687115.1| - 0.00038 19.6 0.1 0.69 8.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|147919152|ref|YP_687115.1| - 0.00052 20.4 0.0 0.00062 20.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919152|ref|YP_687115.1| - 0.00088 18.7 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|147919152|ref|YP_687115.1| - 0.0009 18.7 0.3 0.0089 15.4 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|147919152|ref|YP_687115.1| - 0.0023 17.1 0.0 0.0061 15.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|147919152|ref|YP_687115.1| - 0.0043 16.7 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 1 Archaeal ATPase Adeno_IVa2 PF02456.10 gi|147919152|ref|YP_687115.1| - 0.0049 15.5 0.0 0.022 13.4 0.0 1.8 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_25 PF13481.1 gi|147919152|ref|YP_687115.1| - 0.01 15.2 0.0 0.061 12.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|147919152|ref|YP_687115.1| - 0.02 14.6 0.0 6.9 6.4 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Rad17 PF03215.10 gi|147919152|ref|YP_687115.1| - 0.021 13.5 0.0 0.032 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|147919152|ref|YP_687115.1| - 0.034 12.7 0.0 1.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|147919152|ref|YP_687115.1| - 0.071 13.9 3.4 0.25 12.1 1.1 2.6 1 1 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|147919152|ref|YP_687115.1| - 0.088 11.2 0.0 2.2 6.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|147919152|ref|YP_687115.1| - 0.12 12.3 0.1 0.45 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|147919153|ref|YP_687114.1| - 3e-25 88.8 17.2 3e-25 88.8 12.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|147919154|ref|YP_687113.1| - 1.4e-26 93.1 14.9 1.4e-26 93.1 10.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|147919155|ref|YP_687112.1| - 5.4e-45 154.0 6.3 1.1e-44 152.9 4.4 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|147919155|ref|YP_687112.1| - 1.3e-25 89.4 0.0 1.6e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|147919155|ref|YP_687112.1| - 4.7e-09 36.2 0.1 6.2e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|147919155|ref|YP_687112.1| - 0.00021 20.4 0.0 0.00068 18.8 0.0 2.0 1 1 0 1 1 1 1 LysR substrate binding domain SBP_bac_6 PF13343.1 gi|147919155|ref|YP_687112.1| - 0.03 13.6 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Peptidase_C25_C PF03785.9 gi|147919155|ref|YP_687112.1| - 0.037 13.8 0.2 0.094 12.5 0.1 1.7 1 0 0 1 1 1 0 Peptidase family C25, C terminal ig-like domain PhoU PF01895.14 gi|147919156|ref|YP_687111.1| - 3.3e-19 69.1 11.9 1e-13 51.5 2.3 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|147919156|ref|YP_687111.1| - 1.8e-07 30.7 0.0 4.3e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE FtsJ PF01728.14 gi|147919157|ref|YP_687110.1| - 3.2e-56 190.2 0.0 3.9e-56 189.8 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|147919157|ref|YP_687110.1| - 3.2e-13 49.2 0.8 6.1e-13 48.3 0.5 1.4 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|147919157|ref|YP_687110.1| - 3e-07 30.1 0.0 5.3e-06 26.1 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919157|ref|YP_687110.1| - 1.6e-06 28.6 0.4 5.7e-05 23.6 0.2 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147919157|ref|YP_687110.1| - 0.00041 20.1 0.0 0.0028 17.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltrans_Mon PF14314.1 gi|147919157|ref|YP_687110.1| - 0.012 13.5 0.0 0.015 13.1 0.0 1.1 1 0 0 1 1 1 0 Virus-capping methyltransferase TrkA_N PF02254.13 gi|147919157|ref|YP_687110.1| - 0.033 14.1 0.1 0.066 13.2 0.0 1.6 1 1 0 1 1 1 0 TrkA-N domain UPF0146 PF03686.8 gi|147919157|ref|YP_687110.1| - 0.037 13.8 0.9 0.15 11.8 0.1 2.2 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0146) NNMT_PNMT_TEMT PF01234.12 gi|147919157|ref|YP_687110.1| - 0.051 12.5 0.0 4.3 6.2 0.0 2.2 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_26 PF13659.1 gi|147919157|ref|YP_687110.1| - 0.082 12.9 0.0 0.45 10.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain SNARE_assoc PF09335.6 gi|147919158|ref|YP_687109.1| - 5.2e-27 94.4 6.5 5.2e-27 94.4 4.5 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein LysE PF01810.13 gi|147919158|ref|YP_687109.1| - 0.017 14.4 5.2 0.19 10.9 1.4 2.9 2 1 1 3 3 3 0 LysE type translocator MCH PF02289.11 gi|147919159|ref|YP_687108.1| - 3.7e-86 289.0 0.3 4.1e-86 288.8 0.2 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF2990 PF11693.3 gi|147919159|ref|YP_687108.1| - 0.012 15.4 0.4 0.15 11.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2990) DUF3415 PF11895.3 gi|147919159|ref|YP_687108.1| - 0.069 13.0 0.3 0.66 9.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3415) DHHA1 PF02272.14 gi|147919160|ref|YP_687107.1| - 9.8e-10 37.9 0.2 2.2e-09 36.8 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|147919160|ref|YP_687107.1| - 1.3e-05 24.8 0.3 0.00011 21.8 0.2 2.3 1 1 0 1 1 1 1 DHH family GTP_EFTU PF00009.22 gi|147919161|ref|YP_687106.1| - 1.6e-31 109.2 0.0 2.9e-31 108.3 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|147919161|ref|YP_687106.1| - 6.4e-14 51.9 0.0 1.9e-13 50.4 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|147919161|ref|YP_687106.1| - 2.9e-09 36.9 2.2 2.9e-09 36.9 1.5 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|147919161|ref|YP_687106.1| - 0.002 18.0 0.1 0.0082 16.0 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_4 PF04326.9 gi|147919161|ref|YP_687106.1| - 0.0025 17.9 0.0 0.0076 16.3 0.0 1.9 2 0 0 2 2 2 1 Divergent AAA domain ATP_bind_1 PF03029.12 gi|147919161|ref|YP_687106.1| - 0.12 11.8 0.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Rhodanese PF00581.15 gi|147919162|ref|YP_687105.1| - 3.6e-22 78.8 0.0 1.6e-13 50.9 0.0 3.9 3 2 1 4 4 4 2 Rhodanese-like domain Lactamase_B PF00753.22 gi|147919162|ref|YP_687105.1| - 3e-12 46.6 1.5 3e-12 46.6 1.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily UPF0118 PF01594.11 gi|147919164|ref|YP_687103.1| - 9.4e-45 153.0 39.2 1.2e-44 152.6 27.2 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Antitoxin-MazE PF04014.13 gi|147919165|ref|YP_687102.1| - 3.2e-10 39.5 1.2 4.7e-10 38.9 0.9 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE zf-TFIIB PF13453.1 gi|147919165|ref|YP_687102.1| - 0.00084 18.4 0.7 0.0018 17.4 0.5 1.6 1 0 0 1 1 1 1 Transcription factor zinc-finger YdjO PF14169.1 gi|147919165|ref|YP_687102.1| - 0.0048 16.3 1.5 0.056 12.8 0.3 2.2 2 0 0 2 2 2 1 Cold-inducible protein YdjO Rad50_zn_hook PF04423.9 gi|147919165|ref|YP_687102.1| - 0.019 14.4 1.0 0.14 11.6 0.1 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-C4_Topoisom PF01396.14 gi|147919165|ref|YP_687102.1| - 0.091 12.2 1.0 3.5 7.2 0.1 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_4 PF14447.1 gi|147919165|ref|YP_687102.1| - 0.12 11.9 0.7 0.28 10.7 0.1 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DZR PF12773.2 gi|147919165|ref|YP_687102.1| - 0.24 11.2 2.3 0.47 10.3 1.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|147919165|ref|YP_687102.1| - 0.34 10.5 2.5 5.6 6.7 0.4 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Gin PF10764.4 gi|147919165|ref|YP_687102.1| - 0.57 9.9 2.7 1.1 9.0 1.9 1.5 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin PhnA_Zn_Ribbon PF08274.7 gi|147919165|ref|YP_687102.1| - 4.9 7.0 8.4 1 9.2 1.5 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_pol_B PF00136.16 gi|147919166|ref|YP_687101.1| - 2.8e-46 158.2 0.0 4.2e-46 157.7 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_A PF00476.15 gi|147919167|ref|YP_687100.1| - 0.0021 16.7 0.1 0.0022 16.6 0.1 1.0 1 0 0 1 1 1 1 DNA polymerase family A Glycos_transf_2 PF00535.21 gi|147919168|ref|YP_687099.1| - 2e-33 115.4 0.0 2.6e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147919168|ref|YP_687099.1| - 2.4e-22 79.8 0.0 3.4e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|147919168|ref|YP_687099.1| - 3.2e-17 62.5 0.0 8e-17 61.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|147919168|ref|YP_687099.1| - 2.6e-12 46.3 0.0 3.6e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|147919168|ref|YP_687099.1| - 3.2e-10 40.0 0.1 4.4e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|147919168|ref|YP_687099.1| - 2.3e-07 30.1 0.0 4.7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_5 PF13712.1 gi|147919168|ref|YP_687099.1| - 4.7e-06 25.9 0.1 0.0031 16.7 0.0 2.6 1 1 1 2 2 2 2 Glycosyltransferase like family GNT-I PF03071.10 gi|147919168|ref|YP_687099.1| - 0.00036 19.1 0.1 0.00045 18.8 0.1 1.1 1 0 0 1 1 1 1 GNT-I family Glyco_tranf_2_4 PF13704.1 gi|147919168|ref|YP_687099.1| - 0.00039 20.6 0.0 0.00067 19.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 RNB PF00773.14 gi|147919169|ref|YP_687098.1| - 4.5e-67 226.6 0.0 5.5e-67 226.3 0.0 1.1 1 0 0 1 1 1 1 RNB domain S1 PF00575.18 gi|147919169|ref|YP_687098.1| - 1.8e-05 24.7 0.8 0.0078 16.2 0.3 3.4 2 1 0 2 2 2 1 S1 RNA binding domain A1_Propeptide PF07966.7 gi|147919169|ref|YP_687098.1| - 0.14 12.0 0.4 0.6 9.9 0.0 2.3 2 0 0 2 2 2 0 A1 Propeptide E1_DerP2_DerF2 PF02221.10 gi|147919171|ref|YP_687096.1| - 0.013 15.7 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 ML domain Peptidase_M20 PF01546.23 gi|147919172|ref|YP_687095.1| - 2.1e-31 108.9 0.0 3.1e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|147919172|ref|YP_687095.1| - 2.9e-22 78.5 0.0 4.7e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Ion_trans PF00520.26 gi|147919173|ref|YP_687094.1| - 8.6e-16 57.7 8.4 8.6e-16 57.7 5.9 1.9 2 0 0 2 2 2 1 Ion transport protein Ion_trans_2 PF07885.11 gi|147919173|ref|YP_687094.1| - 5.5e-05 22.8 1.5 5.5e-05 22.8 1.1 2.5 2 1 1 3 3 3 1 Ion channel DUF2818 PF10993.3 gi|147919173|ref|YP_687094.1| - 0.57 10.7 10.5 1.1 9.7 1.4 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2818) Orbi_NS3 PF01616.11 gi|147919173|ref|YP_687094.1| - 7.6 5.4 7.1 6 5.7 0.2 2.6 2 1 0 2 2 2 0 Orbivirus NS3 Beta_propel PF09826.4 gi|147919174|ref|YP_687093.1| - 1.5e-182 607.5 0.0 1.7e-182 607.3 0.0 1.0 1 0 0 1 1 1 1 Beta propeller domain LVIVD PF08309.6 gi|147919174|ref|YP_687093.1| - 0.034 13.1 6.9 1.8 7.5 0.0 3.7 3 1 0 4 4 4 0 LVIVD repeat DUF169 PF02596.10 gi|147919175|ref|YP_687092.1| - 2.2e-50 171.0 0.7 2.4e-50 170.9 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Lactamase_B PF00753.22 gi|147919176|ref|YP_687091.1| - 5.1e-07 29.5 0.7 1e-06 28.5 0.5 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147919176|ref|YP_687091.1| - 0.0011 18.5 0.6 0.0075 15.8 0.4 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF2284 PF10050.4 gi|147919177|ref|YP_687090.1| - 1e-50 171.5 0.1 1.2e-50 171.3 0.1 1.1 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) zinc_ribbon_6 PF14599.1 gi|147919177|ref|YP_687090.1| - 0.18 11.5 2.0 0.58 9.9 0.0 2.3 2 0 0 2 2 2 0 Zinc-ribbon FUSC_2 PF13515.1 gi|147919178|ref|YP_687089.1| - 0.0066 16.3 0.1 0.0069 16.3 0.1 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein-like SLAC1 PF03595.12 gi|147919178|ref|YP_687089.1| - 0.015 13.9 0.2 0.015 13.9 0.2 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel FA_desaturase PF00487.19 gi|147919178|ref|YP_687089.1| - 0.023 14.1 0.8 0.028 13.8 0.5 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Herpes_UL43 PF05072.8 gi|147919178|ref|YP_687089.1| - 0.036 12.8 0.1 0.036 12.8 0.1 1.0 1 0 0 1 1 1 0 Herpesvirus UL43 protein DUF2892 PF11127.3 gi|147919178|ref|YP_687089.1| - 0.093 12.5 4.3 0.13 12.1 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF1290 PF06947.7 gi|147919178|ref|YP_687089.1| - 0.12 12.3 0.1 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1290) PK_C PF02887.11 gi|147919179|ref|YP_687088.1| - 5.5e-19 67.8 0.7 6.7e-19 67.5 0.5 1.1 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain AP_endonuc_2 PF01261.19 gi|147919179|ref|YP_687088.1| - 0.0008 18.7 0.1 0.005 16.1 0.1 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|147919179|ref|YP_687088.1| - 0.0016 18.6 0.0 0.0064 16.6 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily ComA PF02679.10 gi|147919179|ref|YP_687088.1| - 0.0049 15.9 0.1 0.018 14.0 0.0 1.7 2 0 0 2 2 2 1 (2R)-phospho-3-sulfolactate synthase (ComA) Pyr_redox PF00070.22 gi|147919179|ref|YP_687088.1| - 0.0086 16.4 0.2 0.2 12.1 0.0 2.8 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Amidohydro_4 PF13147.1 gi|147919179|ref|YP_687088.1| - 0.0087 16.1 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase Hydrolase PF00702.21 gi|147919179|ref|YP_687088.1| - 0.0098 16.3 0.6 0.22 11.9 0.2 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Asp_Glu_race PF01177.17 gi|147919179|ref|YP_687088.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.1 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase PALP PF00291.20 gi|147919179|ref|YP_687088.1| - 0.045 12.9 0.1 0.053 12.7 0.1 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme QRPTase_C PF01729.14 gi|147919179|ref|YP_687088.1| - 0.048 13.1 0.6 0.13 11.7 0.1 1.9 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF2191 PF09957.4 gi|147919179|ref|YP_687088.1| - 0.12 12.2 0.1 0.32 10.8 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF2797 PF10977.3 gi|147919180|ref|YP_687086.1| - 1.4e-47 162.3 0.0 4.2e-47 160.7 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) Arif-1 PF06770.6 gi|147919180|ref|YP_687086.1| - 0.053 12.8 0.3 0.073 12.4 0.2 1.2 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) Penicillinase_R PF03965.11 gi|147919181|ref|YP_687085.1| - 0.082 13.0 0.3 0.2 11.7 0.0 1.7 2 1 0 2 2 2 0 Penicillinase repressor TMF_TATA_bd PF12325.3 gi|147919181|ref|YP_687085.1| - 0.11 12.1 0.1 0.3 10.8 0.0 1.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding TrmB PF01978.14 gi|147919181|ref|YP_687085.1| - 0.14 11.9 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DRTGG PF07085.7 gi|147919182|ref|YP_687083.1| - 4.3e-30 103.4 0.1 9e-30 102.3 0.1 1.6 1 0 0 1 1 1 1 DRTGG domain AAA_26 PF13500.1 gi|147919182|ref|YP_687083.1| - 1e-25 90.5 0.0 1.7e-25 89.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Hpr_kinase_N PF02603.11 gi|147919182|ref|YP_687083.1| - 0.0026 17.4 0.3 0.04 13.6 0.0 2.7 3 0 0 3 3 3 1 HPr Serine kinase N terminus DUF99 PF01949.11 gi|147919182|ref|YP_687083.1| - 0.043 12.9 0.2 5.4 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF99 MTH865 PF07747.6 gi|147919185|ref|YP_687080.1| - 6.6e-09 35.2 0.0 8.3e-09 34.9 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family TruD PF01142.13 gi|147919186|ref|YP_687079.1| - 6.2e-106 354.2 0.0 6.9e-106 354.0 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|147919188|ref|YP_687077.1| - 2.5e-41 139.9 0.0 2.8e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 FAD_binding_3 PF01494.14 gi|147919190|ref|YP_687075.1| - 1.1e-16 60.8 2.9 4.5e-10 39.1 0.2 2.8 1 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|147919190|ref|YP_687075.1| - 2.6e-13 49.6 0.1 1e-12 47.7 0.0 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.19 gi|147919190|ref|YP_687075.1| - 2.9e-10 39.6 1.2 0.00037 19.4 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|147919190|ref|YP_687075.1| - 4.4e-10 39.2 0.2 6.3e-10 38.7 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|147919190|ref|YP_687075.1| - 4.3e-08 32.0 0.2 7.3e-08 31.2 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|147919190|ref|YP_687075.1| - 1e-07 32.0 2.8 3.2e-07 30.4 1.9 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|147919190|ref|YP_687075.1| - 2.5e-06 26.3 1.2 0.0039 15.8 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|147919190|ref|YP_687075.1| - 1.1e-05 24.4 0.5 1.4e-05 24.1 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|147919190|ref|YP_687075.1| - 1.5e-05 24.1 0.3 4.4e-05 22.6 0.1 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|147919190|ref|YP_687075.1| - 3.5e-05 22.8 4.0 4.3e-05 22.5 0.5 2.3 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|147919190|ref|YP_687075.1| - 0.00017 21.5 0.2 0.00057 19.8 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|147919190|ref|YP_687075.1| - 0.0016 18.5 0.1 0.0031 17.5 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|147919190|ref|YP_687075.1| - 0.096 12.5 0.1 0.3 10.9 0.1 1.8 2 0 0 2 2 2 0 ThiF family Pyr_redox PF00070.22 gi|147919190|ref|YP_687075.1| - 0.19 12.1 1.3 4.1 7.8 0.2 3.1 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase TRM PF02005.11 gi|147919191|ref|YP_687074.1| - 2.2e-105 352.6 0.0 2.5e-105 352.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.9 gi|147919191|ref|YP_687074.1| - 0.025 13.9 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Zn-ribbon_8 PF09723.5 gi|147919191|ref|YP_687074.1| - 0.26 11.2 1.6 0.44 10.5 0.2 2.0 2 0 0 2 2 2 0 Zinc ribbon domain Tic20 PF09685.5 gi|147919192|ref|YP_687073.1| - 0.0017 18.2 4.8 0.0017 18.2 3.3 2.7 2 1 0 2 2 2 1 Tic20-like protein Activator-TraM PF11657.3 gi|147919192|ref|YP_687073.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional activator TraM SCIMP PF15050.1 gi|147919192|ref|YP_687073.1| - 0.3 10.9 2.4 0.33 10.8 0.1 2.0 2 0 0 2 2 2 0 SCIMP protein DUF4577 PF15145.1 gi|147919192|ref|YP_687073.1| - 3.8 7.4 6.0 17 5.3 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4577) AAA_5 PF07728.9 gi|147919193|ref|YP_687072.1| - 1.5e-19 70.0 0.0 2.7e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|147919193|ref|YP_687072.1| - 1.4e-06 28.5 0.0 0.00075 19.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|147919193|ref|YP_687072.1| - 2.4e-05 24.6 0.0 3.9e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|147919193|ref|YP_687072.1| - 3.2e-05 24.1 0.0 8.8e-05 22.7 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|147919193|ref|YP_687072.1| - 6.7e-05 22.5 0.0 0.00016 21.2 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|147919193|ref|YP_687072.1| - 7e-05 22.0 0.0 0.0019 17.4 0.0 2.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|147919193|ref|YP_687072.1| - 0.00064 19.4 0.0 0.0016 18.1 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|147919193|ref|YP_687072.1| - 0.0013 17.8 0.0 0.0028 16.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.1 gi|147919193|ref|YP_687072.1| - 0.0029 18.4 0.0 0.0057 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|147919193|ref|YP_687072.1| - 0.0031 17.6 0.0 0.031 14.4 0.0 2.5 3 0 0 3 3 3 1 RNA helicase AAA_33 PF13671.1 gi|147919193|ref|YP_687072.1| - 0.0033 17.3 0.0 0.0062 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbbQ_C PF08406.5 gi|147919193|ref|YP_687072.1| - 0.018 15.0 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal NB-ARC PF00931.17 gi|147919193|ref|YP_687072.1| - 0.018 13.9 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|147919193|ref|YP_687072.1| - 0.023 14.6 0.0 0.065 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|147919193|ref|YP_687072.1| - 0.023 13.7 0.0 0.086 11.8 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_24 PF13479.1 gi|147919193|ref|YP_687072.1| - 0.023 14.2 0.0 0.056 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|147919193|ref|YP_687072.1| - 0.026 13.9 0.0 0.074 12.4 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|147919193|ref|YP_687072.1| - 0.047 13.1 0.0 0.37 10.2 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.7 gi|147919193|ref|YP_687072.1| - 0.049 13.2 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|147919193|ref|YP_687072.1| - 0.051 13.5 0.0 0.095 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|147919193|ref|YP_687072.1| - 0.099 12.3 0.1 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 Archaeal ATPase MobB PF03205.9 gi|147919193|ref|YP_687072.1| - 0.13 11.9 0.0 0.65 9.6 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|147919193|ref|YP_687072.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|147919193|ref|YP_687072.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain VWA_2 PF13519.1 gi|147919194|ref|YP_687071.1| - 5.1e-05 23.4 0.0 7.1e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|147919194|ref|YP_687071.1| - 0.0033 17.1 0.0 0.0072 16.0 0.0 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|147919194|ref|YP_687071.1| - 0.014 15.2 0.0 0.031 14.0 0.0 1.6 1 1 0 1 1 1 0 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|147919194|ref|YP_687071.1| - 0.025 13.7 0.1 0.32 10.0 0.0 2.1 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein PmbA_TldD PF01523.11 gi|147919195|ref|YP_687070.1| - 4.6e-76 255.8 0.5 6.1e-76 255.5 0.3 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|147919196|ref|YP_687069.1| - 1.1e-68 231.7 0.6 1.5e-68 231.2 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase FixG_C PF11614.3 gi|147919197|ref|YP_687068.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase DAO PF01266.19 gi|147919198|ref|YP_687067.1| - 6.2e-12 45.0 3.6 3.5e-07 29.4 0.1 2.8 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|147919198|ref|YP_687067.1| - 4.7e-11 42.9 1.2 0.00018 21.4 0.2 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|147919198|ref|YP_687067.1| - 2.5e-09 36.4 0.6 1e-08 34.4 0.4 2.0 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|147919198|ref|YP_687067.1| - 3.5e-09 35.6 0.3 0.0001 20.9 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|147919198|ref|YP_687067.1| - 2.5e-08 33.2 1.1 0.0062 15.4 0.0 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|147919198|ref|YP_687067.1| - 1.1e-06 27.9 0.2 0.00026 20.1 0.1 2.6 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|147919198|ref|YP_687067.1| - 5.4e-06 26.3 0.1 1.6e-05 24.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|147919198|ref|YP_687067.1| - 7.5e-06 26.2 0.1 0.28 11.6 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|147919198|ref|YP_687067.1| - 1.6e-05 24.1 0.2 7.6e-05 21.9 0.2 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|147919198|ref|YP_687067.1| - 9.9e-05 22.4 0.1 0.0021 18.1 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|147919198|ref|YP_687067.1| - 0.00014 20.9 0.1 0.04 12.8 0.1 2.3 2 1 0 2 2 2 2 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|147919198|ref|YP_687067.1| - 0.00065 19.4 0.2 0.034 13.9 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|147919198|ref|YP_687067.1| - 0.0029 16.7 0.8 0.0078 15.3 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Amino_oxidase PF01593.19 gi|147919198|ref|YP_687067.1| - 0.0064 15.6 0.2 0.22 10.5 0.0 2.7 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Trp_halogenase PF04820.9 gi|147919198|ref|YP_687067.1| - 0.048 12.2 0.4 0.5 8.9 0.2 2.0 2 0 0 2 2 2 0 Tryptophan halogenase MFS_1 PF07690.11 gi|147919199|ref|YP_687066.1| - 6.4e-58 196.1 61.4 8.2e-37 126.7 24.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147919199|ref|YP_687066.1| - 9.4e-22 77.1 43.7 2.5e-14 52.7 10.6 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|147919199|ref|YP_687066.1| - 1.6e-13 49.8 42.4 2.6e-10 39.3 10.0 2.3 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|147919199|ref|YP_687066.1| - 2e-06 27.4 6.5 0.00013 21.7 0.8 3.1 2 0 0 2 2 2 2 MFS_1 like family UNC-93 PF05978.11 gi|147919199|ref|YP_687066.1| - 1.3e-05 24.7 12.4 0.00083 18.8 0.7 3.2 2 2 0 2 2 2 2 Ion channel regulatory protein UNC-93 Folate_carrier PF01770.13 gi|147919199|ref|YP_687066.1| - 0.01 14.3 0.1 0.01 14.3 0.0 1.6 2 0 0 2 2 2 0 Reduced folate carrier MFS_3 PF05977.8 gi|147919199|ref|YP_687066.1| - 0.26 9.3 34.1 1.5 6.8 6.5 2.9 1 1 1 2 2 2 0 Transmembrane secretion effector DUF1757 PF08560.5 gi|147919200|ref|YP_687065.1| - 0.077 12.6 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1757) Yip1 PF04893.12 gi|147919200|ref|YP_687065.1| - 0.71 9.3 11.2 1.2 8.6 7.7 1.3 1 1 0 1 1 1 0 Yip1 domain E1-E2_ATPase PF00122.15 gi|147919201|ref|YP_687064.1| - 2.3e-59 200.2 0.0 2.3e-59 200.2 0.0 2.5 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147919201|ref|YP_687064.1| - 1.7e-25 90.7 0.0 4.1e-25 89.4 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|147919201|ref|YP_687064.1| - 2.5e-18 66.2 11.2 2.5e-18 66.2 7.7 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|147919201|ref|YP_687064.1| - 5.3e-16 57.8 0.0 1.2e-15 56.6 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|147919201|ref|YP_687064.1| - 1.4e-10 41.6 0.1 2.7e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|147919201|ref|YP_687064.1| - 3e-06 27.0 0.0 6.3e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|147919201|ref|YP_687064.1| - 0.001 18.7 0.4 0.0031 17.1 0.2 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase EMP24_GP25L PF01105.19 gi|147919202|ref|YP_687063.1| - 0.012 15.3 0.1 0.012 15.3 0.1 1.6 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD MSP1_C PF07462.6 gi|147919202|ref|YP_687063.1| - 0.029 12.7 0.8 0.029 12.7 0.5 1.0 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus PPC PF04151.10 gi|147919202|ref|YP_687063.1| - 0.038 14.9 4.8 0.057 14.3 3.3 1.5 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain 7TM_GPCR_Srh PF10318.4 gi|147919202|ref|YP_687063.1| - 0.11 11.2 0.6 0.14 10.9 0.4 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh DUF3568 PF12092.3 gi|147919202|ref|YP_687063.1| - 0.41 10.3 3.5 3.4 7.4 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3568) SNN_transmemb PF09049.5 gi|147919202|ref|YP_687063.1| - 2.7 7.7 6.1 4.3 7.1 4.2 1.3 1 0 0 1 1 1 0 Stannin transmembrane NIR_SIR PF01077.17 gi|147919203|ref|YP_687062.1| - 1.7e-36 124.9 0.1 3.4e-36 123.9 0.0 1.5 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|147919203|ref|YP_687062.1| - 6.4e-13 48.1 0.0 1.2e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain PMBR PF09373.5 gi|147919203|ref|YP_687062.1| - 0.019 14.8 0.1 0.061 13.3 0.0 1.9 2 0 0 2 2 2 0 Pseudomurein-binding repeat Glutaredoxin PF00462.19 gi|147919204|ref|YP_687061.1| - 2.4e-11 43.4 0.2 2.9e-11 43.1 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|147919204|ref|YP_687061.1| - 9.3e-06 25.3 0.0 1.1e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|147919204|ref|YP_687061.1| - 1.3e-05 25.3 0.6 0.0011 19.1 0.4 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DUF836 PF05768.9 gi|147919204|ref|YP_687061.1| - 0.00012 22.2 0.0 0.00013 22.1 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.1 gi|147919204|ref|YP_687061.1| - 0.00038 20.5 0.3 0.35 10.8 0.0 2.0 1 1 1 2 2 2 2 Thioredoxin ArsC PF03960.10 gi|147919204|ref|YP_687061.1| - 0.0015 18.5 0.1 0.16 12.0 0.1 2.0 1 1 1 2 2 2 1 ArsC family GST_N_3 PF13417.1 gi|147919204|ref|YP_687061.1| - 0.0076 16.4 0.0 0.0094 16.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin PF00085.15 gi|147919204|ref|YP_687061.1| - 0.096 12.3 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin KGG PF10685.4 gi|147919205|ref|YP_687060.1| - 1.4e-06 28.0 7.0 0.0018 18.1 0.0 2.6 2 1 0 2 2 2 2 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|147919205|ref|YP_687060.1| - 0.00059 20.0 6.0 0.001 19.3 4.1 1.5 1 1 0 1 1 1 1 Small hydrophilic plant seed protein YpjP PF14005.1 gi|147919205|ref|YP_687060.1| - 0.1 12.4 0.1 0.1 12.4 0.1 1.0 1 0 0 1 1 1 0 YpjP-like protein SASP PF00269.15 gi|147919205|ref|YP_687060.1| - 0.53 10.1 6.8 4.6 7.1 1.0 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type MT0933_antitox PF14013.1 gi|147919205|ref|YP_687060.1| - 8 6.6 8.7 88 3.3 6.0 2.1 1 1 0 1 1 1 0 MT0933-like antitoxin protein TGT PF01702.13 gi|147919207|ref|YP_687058.1| - 1.5e-48 165.1 0.0 2e-48 164.7 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TPR_11 PF13414.1 gi|147919208|ref|YP_687057.1| - 3.2e-71 234.9 31.7 6.3e-15 54.5 0.1 6.8 1 1 5 8 8 8 8 TPR repeat TPR_16 PF13432.1 gi|147919208|ref|YP_687057.1| - 2.5e-60 200.0 44.1 1.1e-12 48.2 0.8 6.9 1 1 7 9 9 9 9 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919208|ref|YP_687057.1| - 5.5e-54 175.9 16.8 1.4e-05 24.8 0.1 10.0 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919208|ref|YP_687057.1| - 1.5e-52 173.1 21.9 1.5e-08 33.9 0.1 10.1 11 0 0 11 11 10 8 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147919208|ref|YP_687057.1| - 7.6e-51 165.9 25.6 2.6e-08 33.1 0.2 10.2 11 0 0 11 11 11 8 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919208|ref|YP_687057.1| - 1e-44 146.8 24.0 2.2e-07 30.8 0.4 9.9 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919208|ref|YP_687057.1| - 6.3e-40 134.9 21.4 1.5e-12 47.2 0.0 6.2 2 2 5 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919208|ref|YP_687057.1| - 9.2e-40 131.4 14.5 5.9e-05 22.5 0.5 9.9 8 1 2 10 10 10 7 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919208|ref|YP_687057.1| - 3e-35 120.3 25.9 1.2e-08 35.1 0.4 6.9 3 1 5 8 8 8 7 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147919208|ref|YP_687057.1| - 1.7e-26 90.8 20.5 0.0095 16.3 0.0 9.7 11 0 0 11 11 9 7 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919208|ref|YP_687057.1| - 1.9e-26 89.6 13.3 0.00022 20.7 0.0 9.8 9 1 1 10 10 10 5 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147919208|ref|YP_687057.1| - 4.1e-15 55.6 15.2 0.0012 18.9 0.0 7.1 2 1 5 7 7 7 4 Tetratricopeptide repeat TPR_10 PF13374.1 gi|147919208|ref|YP_687057.1| - 9.5e-14 50.7 27.7 0.0018 18.1 0.0 9.2 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147919208|ref|YP_687057.1| - 1.6e-12 47.0 16.4 0.011 15.5 0.3 6.0 2 1 4 6 6 6 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919208|ref|YP_687057.1| - 3.5e-12 46.2 9.9 0.00037 20.5 0.1 4.1 1 1 5 6 6 6 5 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.9 gi|147919208|ref|YP_687057.1| - 7.1e-11 41.4 8.7 0.68 10.5 0.0 8.5 9 0 0 9 9 9 1 Tetratricopeptide repeat BTAD PF03704.12 gi|147919208|ref|YP_687057.1| - 5.9e-10 39.6 5.7 0.045 14.0 0.2 4.6 2 2 3 5 5 5 3 Bacterial transcriptional activator domain NARP1 PF12569.3 gi|147919208|ref|YP_687057.1| - 1.5e-08 33.8 3.9 0.077 11.7 0.1 4.1 2 1 2 4 4 4 4 NMDA receptor-regulated protein 1 TOM20_plant PF06552.7 gi|147919208|ref|YP_687057.1| - 2e-08 34.0 2.0 0.019 14.5 0.1 4.5 1 1 1 4 4 4 2 Plant specific mitochondrial import receptor subunit TOM20 TPR_5 PF12688.2 gi|147919208|ref|YP_687057.1| - 7.5e-08 32.4 6.5 1e-05 25.5 0.1 4.2 2 1 2 4 4 4 1 Tetratrico peptide repeat TPR_15 PF13429.1 gi|147919208|ref|YP_687057.1| - 9.1e-08 31.4 8.7 0.0019 17.3 0.5 3.9 1 1 1 3 3 3 3 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|147919208|ref|YP_687057.1| - 0.0001 21.4 13.6 1.9 7.7 0.1 7.0 9 0 0 9 9 7 1 SHNi-TPR TPR_3 PF07720.7 gi|147919208|ref|YP_687057.1| - 0.00012 21.7 2.0 1 9.2 0.3 5.0 4 0 0 4 4 4 1 Tetratricopeptide repeat PPR PF01535.15 gi|147919208|ref|YP_687057.1| - 0.00013 21.6 2.6 4 7.6 0.0 4.8 6 0 0 6 6 4 0 PPR repeat TPR_21 PF09976.4 gi|147919208|ref|YP_687057.1| - 0.00024 21.0 11.2 0.99 9.3 2.9 4.3 2 1 3 5 5 5 2 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|147919208|ref|YP_687057.1| - 0.00053 19.2 1.8 0.0022 17.2 0.3 2.3 2 1 1 3 3 3 1 Coatomer epsilon subunit DUF3366 PF11846.3 gi|147919208|ref|YP_687057.1| - 0.00067 19.5 3.3 0.015 15.1 0.0 3.2 1 1 3 4 4 4 1 Domain of unknown function (DUF3366) Sel1 PF08238.7 gi|147919208|ref|YP_687057.1| - 0.0009 19.8 16.4 0.022 15.3 0.2 6.4 6 0 0 6 6 5 1 Sel1 repeat EST1_DNA_bind PF10373.4 gi|147919208|ref|YP_687057.1| - 0.001 18.3 0.7 0.16 11.1 0.6 2.6 2 1 0 2 2 1 1 Est1 DNA/RNA binding domain FAT PF02259.18 gi|147919208|ref|YP_687057.1| - 0.0015 17.6 0.9 0.5 9.2 0.1 3.5 2 1 0 3 3 3 1 FAT domain RPN7 PF10602.4 gi|147919208|ref|YP_687057.1| - 0.013 14.8 4.9 10 5.4 0.1 4.7 2 1 3 5 5 5 0 26S proteasome subunit RPN7 TPPII_N PF12583.3 gi|147919208|ref|YP_687057.1| - 0.013 15.6 7.7 0.83 9.7 0.0 4.6 2 2 2 5 5 4 0 Tripeptidyl peptidase II N terminal MIT PF04212.13 gi|147919208|ref|YP_687057.1| - 0.018 14.8 16.7 5.4 6.9 0.0 7.5 6 2 0 7 7 7 0 MIT (microtubule interacting and transport) domain ST7 PF04184.7 gi|147919208|ref|YP_687057.1| - 0.051 11.8 0.1 0.099 10.8 0.1 1.4 1 0 0 1 1 1 0 ST7 protein DUF3856 PF12968.2 gi|147919208|ref|YP_687057.1| - 0.46 10.3 3.6 13 5.5 0.0 4.4 4 2 4 8 8 6 0 Domain of Unknown Function (DUF3856) Fis1_TPR_C PF14853.1 gi|147919208|ref|YP_687057.1| - 0.58 10.0 10.5 6.6 6.6 0.0 5.8 5 3 3 8 8 8 0 Fis1 C-terminal tetratricopeptide repeat PPR_1 PF12854.2 gi|147919208|ref|YP_687057.1| - 0.7 9.4 6.7 4.7 6.7 0.0 4.6 6 0 0 6 6 5 0 PPR repeat SNAP PF14938.1 gi|147919208|ref|YP_687057.1| - 0.91 8.6 11.4 1.2 8.1 0.1 3.5 2 1 0 3 3 3 0 Soluble NSF attachment protein, SNAP TPR_11 PF13414.1 gi|147919209|ref|YP_687056.1| - 8.2e-68 223.9 24.5 1.1e-14 53.7 0.2 5.3 4 1 0 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|147919209|ref|YP_687056.1| - 2.1e-64 208.3 24.7 5e-07 29.1 0.0 10.1 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919209|ref|YP_687056.1| - 3.4e-55 181.5 21.6 6.9e-07 28.6 0.0 10.3 10 0 0 10 10 10 10 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919209|ref|YP_687056.1| - 9.3e-54 179.0 35.4 6.6e-10 39.3 0.1 6.3 3 2 4 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919209|ref|YP_687056.1| - 1.4e-45 149.7 12.8 2.3e-05 23.8 0.0 10.1 9 1 1 10 10 10 9 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919209|ref|YP_687056.1| - 5.1e-45 151.2 21.3 4.5e-11 42.5 0.1 6.4 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919209|ref|YP_687056.1| - 9.5e-41 134.6 12.7 7.2e-05 22.6 0.0 11.0 10 1 1 11 11 11 9 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919209|ref|YP_687056.1| - 3.5e-39 129.7 22.4 3.9e-05 23.9 0.1 10.0 1 1 9 10 10 10 10 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919209|ref|YP_687056.1| - 2.1e-37 127.2 22.0 1.1e-10 41.6 0.0 6.4 3 2 2 6 6 6 6 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919209|ref|YP_687056.1| - 2.5e-22 76.8 21.4 0.0041 16.7 0.1 8.9 7 2 2 9 9 8 6 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147919209|ref|YP_687056.1| - 3.8e-19 67.7 12.7 0.095 13.2 0.0 9.4 10 0 0 10 10 9 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919209|ref|YP_687056.1| - 2.6e-17 62.7 12.5 1.1e-06 28.7 1.1 4.1 2 2 3 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.1 gi|147919209|ref|YP_687056.1| - 1.5e-14 53.8 7.8 0.0076 16.3 0.1 5.6 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147919209|ref|YP_687056.1| - 2e-14 53.1 19.7 0.00013 21.7 0.8 6.7 1 1 6 8 8 8 6 Tetratricopeptide repeat TPR_10 PF13374.1 gi|147919209|ref|YP_687056.1| - 2.1e-14 52.8 27.3 0.0092 15.8 0.3 8.8 9 1 1 10 10 8 4 Tetratricopeptide repeat TPR_21 PF09976.4 gi|147919209|ref|YP_687056.1| - 2e-12 47.2 12.9 8e-07 29.0 1.5 4.1 3 1 1 5 5 4 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|147919209|ref|YP_687056.1| - 8.5e-11 41.4 6.8 0.00064 18.8 0.3 4.2 2 2 2 4 4 4 4 Tetratricopeptide repeat BTAD PF03704.12 gi|147919209|ref|YP_687056.1| - 1.9e-10 41.2 14.0 0.007 16.6 0.5 4.6 1 1 3 4 4 4 4 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|147919209|ref|YP_687056.1| - 8.4e-10 38.1 20.8 0.0021 18.3 0.1 7.9 9 0 0 9 9 7 3 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|147919209|ref|YP_687056.1| - 1.7e-07 31.0 0.5 1.1 8.8 0.0 5.9 1 1 6 7 7 7 1 Plant specific mitochondrial import receptor subunit TOM20 NARP1 PF12569.3 gi|147919209|ref|YP_687056.1| - 1.8e-07 30.3 5.9 0.069 11.8 0.0 4.3 3 1 1 5 5 5 2 NMDA receptor-regulated protein 1 RPN7 PF10602.4 gi|147919209|ref|YP_687056.1| - 9.2e-07 28.4 9.6 1.8 7.9 0.1 6.1 2 2 3 6 6 6 2 26S proteasome subunit RPN7 SHNi-TPR PF10516.4 gi|147919209|ref|YP_687056.1| - 1.4e-05 24.2 2.3 13 5.0 0.0 6.5 7 1 0 7 7 6 0 SHNi-TPR Coatomer_E PF04733.9 gi|147919209|ref|YP_687056.1| - 1.8e-05 24.0 2.9 0.041 13.0 0.0 4.1 2 1 2 4 4 4 1 Coatomer epsilon subunit PPR PF01535.15 gi|147919209|ref|YP_687056.1| - 0.00013 21.6 4.3 10 6.3 0.0 6.6 7 0 0 7 7 7 0 PPR repeat FAT PF02259.18 gi|147919209|ref|YP_687056.1| - 0.0018 17.3 0.0 0.97 8.3 0.0 3.0 1 1 2 3 3 3 1 FAT domain TPR_3 PF07720.7 gi|147919209|ref|YP_687056.1| - 0.0048 16.6 7.9 3.4 7.5 0.0 6.1 8 0 0 8 8 6 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|147919209|ref|YP_687056.1| - 0.0068 16.2 9.6 6.5 6.6 0.0 6.4 2 2 3 6 6 6 0 Anaphase-promoting complex subunit 5 DUF2366 PF10171.4 gi|147919209|ref|YP_687056.1| - 0.059 12.8 0.1 9.5 5.6 0.0 2.8 2 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2366) HrpB1_HrpK PF09613.5 gi|147919209|ref|YP_687056.1| - 0.097 12.1 0.1 0.89 9.0 0.0 2.5 3 1 1 4 4 4 0 Bacterial type III secretion protein (HrpB1_HrpK) Fis1_TPR_C PF14853.1 gi|147919209|ref|YP_687056.1| - 0.24 11.3 7.3 28 4.6 0.0 5.4 5 2 2 7 7 5 0 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.13 gi|147919209|ref|YP_687056.1| - 0.27 11.1 14.9 8.2 6.3 0.1 6.4 7 1 0 7 7 7 0 MIT (microtubule interacting and transport) domain MscL PF01741.13 gi|147919210|ref|YP_687055.1| - 5.5e-23 81.5 3.8 5.9e-23 81.4 2.6 1.0 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL ABC2_membrane_5 PF13346.1 gi|147919210|ref|YP_687055.1| - 0.039 13.2 6.9 0.055 12.7 4.8 1.2 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF1656 PF07869.7 gi|147919210|ref|YP_687055.1| - 0.1 12.3 1.0 3.2 7.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) MatC_N PF07158.6 gi|147919210|ref|YP_687055.1| - 0.14 11.9 4.7 1 9.1 2.7 2.4 1 1 2 3 3 3 0 Dicarboxylate carrier protein MatC N-terminus Colicin_V PF02674.11 gi|147919210|ref|YP_687055.1| - 3.2 7.5 8.1 15 5.4 5.7 1.7 1 1 0 1 1 1 0 Colicin V production protein DUF2798 PF11391.3 gi|147919210|ref|YP_687055.1| - 5.2 6.8 7.6 0.84 9.4 0.2 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF2798) Ribosomal_S8e PF01201.17 gi|147919211|ref|YP_687054.1| - 2.5e-34 118.2 5.1 2.8e-34 118.1 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Head_binding PF09008.5 gi|147919211|ref|YP_687054.1| - 0.07 13.1 0.1 0.095 12.7 0.0 1.2 1 0 0 1 1 1 0 Head binding Exosortase_EpsH PF09721.5 gi|147919213|ref|YP_687052.1| - 2e-49 168.1 29.8 2.4e-49 167.9 20.7 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TMP-TENI PF02581.12 gi|147919214|ref|YP_687051.1| - 9.8e-63 210.5 0.3 1.6e-62 209.8 0.0 1.4 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|147919214|ref|YP_687051.1| - 1.5e-07 30.8 2.3 2.6e-07 30.1 1.6 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|147919214|ref|YP_687051.1| - 0.00048 19.1 0.1 0.0007 18.6 0.1 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|147919214|ref|YP_687051.1| - 0.00055 18.9 0.2 0.0015 17.4 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF561) ThiG PF05690.9 gi|147919214|ref|YP_687051.1| - 0.00083 18.4 0.5 0.0011 18.1 0.3 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|147919214|ref|YP_687051.1| - 0.001 18.1 0.0 0.0019 17.2 0.0 1.4 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|147919214|ref|YP_687051.1| - 0.01 15.1 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|147919214|ref|YP_687051.1| - 0.01 14.9 0.1 0.032 13.3 0.1 1.7 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family HK PF02110.10 gi|147919215|ref|YP_687050.1| - 4.4e-89 297.8 4.6 5.1e-89 297.6 3.2 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|147919215|ref|YP_687050.1| - 0.00012 21.3 0.9 0.00022 20.5 0.6 1.4 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|147919215|ref|YP_687050.1| - 0.00066 19.0 1.5 0.00079 18.7 1.0 1.1 1 0 0 1 1 1 1 Carbohydrate kinase DUF4147 PF13660.1 gi|147919216|ref|YP_687049.1| - 2.5e-87 291.9 0.1 3.4e-87 291.5 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|147919216|ref|YP_687049.1| - 1.1e-33 115.5 0.3 2.3e-33 114.4 0.2 1.6 1 0 0 1 1 1 1 MOFRL family Metalloenzyme PF01676.13 gi|147919217|ref|YP_687048.1| - 5.6e-11 42.3 0.0 1.6e-09 37.5 0.0 2.2 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|147919217|ref|YP_687048.1| - 8.3e-09 35.2 0.1 1e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|147919217|ref|YP_687048.1| - 0.0035 16.5 0.0 0.01 15.0 0.0 1.8 1 1 0 1 1 1 1 Sulfatase Alk_phosphatase PF00245.15 gi|147919217|ref|YP_687048.1| - 0.051 12.2 0.0 1 7.9 0.0 2.0 2 0 0 2 2 2 0 Alkaline phosphatase PglZ PF08665.7 gi|147919217|ref|YP_687048.1| - 0.085 12.5 0.1 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 PglZ domain DeoC PF01791.4 gi|147919218|ref|YP_687047.1| - 2.2e-46 158.0 0.1 3.3e-46 157.4 0.0 1.3 1 0 0 1 1 1 1 DeoC/LacD family aldolase PRA-PH PF01503.12 gi|147919219|ref|YP_687046.1| - 7.8e-14 51.7 0.0 8.9e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|147919219|ref|YP_687046.1| - 0.0015 18.4 1.2 0.0017 18.2 0.2 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain CBS PF00571.23 gi|147919220|ref|YP_687045.1| - 1e-26 92.4 3.1 7.2e-13 48.1 0.1 2.4 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|147919220|ref|YP_687045.1| - 3.5e-13 49.4 0.4 1e-12 47.9 0.3 1.9 1 1 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|147919220|ref|YP_687045.1| - 0.0032 16.0 0.5 0.071 11.5 0.1 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1015) ParBc_2 PF08857.6 gi|147919220|ref|YP_687045.1| - 0.011 15.6 0.1 0.059 13.1 0.0 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease CRS1_YhbY PF01985.16 gi|147919221|ref|YP_687044.1| - 5.5e-25 87.1 1.2 6e-25 87.0 0.8 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MMR_HSR1 PF01926.18 gi|147919222|ref|YP_687043.1| - 0.15 12.0 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase Cyclase PF04199.8 gi|147919223|ref|YP_687041.1| - 1.6e-25 89.7 0.0 4.2e-25 88.4 0.0 1.6 1 1 1 2 2 2 1 Putative cyclase PfkB PF00294.19 gi|147919224|ref|YP_687040.1| - 1.6e-56 191.6 0.0 1.9e-56 191.4 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|147919224|ref|YP_687040.1| - 7.6e-06 25.2 0.0 2.6e-05 23.5 0.0 1.7 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase DUF2637 PF10935.3 gi|147919225|ref|YP_687039.1| - 0.73 9.7 6.1 0.39 10.6 2.5 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2637) Lactamase_B PF00753.22 gi|147919226|ref|YP_687038.1| - 2.2e-14 53.5 4.4 9.4e-14 51.5 3.1 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147919226|ref|YP_687038.1| - 9.7e-07 28.5 2.3 2.7e-06 27.0 1.6 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RelB PF04221.7 gi|147919226|ref|YP_687038.1| - 0.065 12.9 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 RelB antitoxin Lactamase_B_3 PF13483.1 gi|147919226|ref|YP_687038.1| - 0.1 12.2 0.7 0.2 11.3 0.5 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain HDPD PF02924.9 gi|147919226|ref|YP_687038.1| - 0.17 11.6 1.2 0.26 11.0 0.1 1.8 2 0 0 2 2 2 0 Bacteriophage lambda head decoration protein D VWA_2 PF13519.1 gi|147919227|ref|YP_687037.1| - 4.1e-08 33.5 0.2 9.4e-08 32.3 0.1 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|147919227|ref|YP_687037.1| - 6.2e-07 28.7 0.0 1.3e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|147919227|ref|YP_687037.1| - 0.00049 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|147919227|ref|YP_687037.1| - 0.0011 18.7 0.0 0.0031 17.2 0.0 1.8 1 1 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|147919227|ref|YP_687037.1| - 0.023 14.4 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 vWA found in TerF C terminus AAA_5 PF07728.9 gi|147919228|ref|YP_687036.1| - 4.7e-27 94.4 0.0 7.6e-27 93.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|147919228|ref|YP_687036.1| - 2.7e-05 24.4 0.0 5.8e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|147919228|ref|YP_687036.1| - 0.00016 21.3 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|147919228|ref|YP_687036.1| - 0.00064 18.9 0.0 0.0033 16.6 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|147919228|ref|YP_687036.1| - 0.0019 18.2 1.7 0.007 16.3 0.2 2.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|147919228|ref|YP_687036.1| - 0.037 14.8 0.3 1.3 9.8 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|147919228|ref|YP_687036.1| - 0.078 12.3 0.1 0.37 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|147919228|ref|YP_687036.1| - 0.1 12.0 0.0 0.89 9.0 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain GATase_3 PF07685.9 gi|147919229|ref|YP_687035.1| - 1.6e-42 144.7 0.0 2.4e-42 144.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|147919229|ref|YP_687035.1| - 3.7e-29 101.5 0.0 5.2e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|147919229|ref|YP_687035.1| - 2.4e-19 69.7 0.0 1.5e-18 67.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|147919229|ref|YP_687035.1| - 2.1e-05 24.2 0.0 0.0017 18.0 0.0 2.7 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|147919229|ref|YP_687035.1| - 0.0025 17.5 0.1 1.3 8.6 0.0 2.3 2 0 0 2 2 2 2 NTPase GATase PF00117.23 gi|147919229|ref|YP_687035.1| - 0.0038 16.7 0.0 0.0087 15.5 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I CTP_synth_N PF06418.9 gi|147919229|ref|YP_687035.1| - 0.12 11.4 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 CTP synthase N-terminus DUF1611 PF07755.6 gi|147919229|ref|YP_687035.1| - 0.15 10.7 0.1 0.67 8.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) DUF169 PF02596.10 gi|147919230|ref|YP_687034.1| - 3.3e-17 62.6 0.0 3.8e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Peripla_BP_2 PF01497.13 gi|147919231|ref|YP_687033.1| - 1.9e-32 112.3 1.7 2.4e-32 111.9 1.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein T2SS-T3SS_pil_N PF13629.1 gi|147919231|ref|YP_687033.1| - 0.015 14.8 2.6 0.19 11.3 0.3 2.5 2 0 0 2 2 2 0 Pilus formation protein N terminal region FecCD PF01032.13 gi|147919232|ref|YP_687032.1| - 4.4e-88 295.0 36.6 5.7e-88 294.7 25.4 1.2 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|147919232|ref|YP_687032.1| - 1.1e-08 34.7 18.2 1.1e-08 34.7 12.6 2.2 2 1 1 3 3 3 1 ABC 3 transport family ABC_tran PF00005.22 gi|147919233|ref|YP_687031.1| - 9.2e-33 113.4 0.0 1.2e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919233|ref|YP_687031.1| - 4.2e-10 40.0 0.1 0.00021 21.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919233|ref|YP_687031.1| - 6.4e-07 28.8 1.0 3.4e-05 23.1 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|147919233|ref|YP_687031.1| - 1.6e-05 24.9 0.5 0.00011 22.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|147919233|ref|YP_687031.1| - 6.4e-05 23.3 0.0 0.00013 22.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919233|ref|YP_687031.1| - 0.0001 21.7 0.1 0.0002 20.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|147919233|ref|YP_687031.1| - 0.00036 20.2 0.2 0.00095 18.8 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|147919233|ref|YP_687031.1| - 0.0029 17.4 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147919233|ref|YP_687031.1| - 0.0038 18.0 0.4 0.016 16.0 0.1 2.3 1 1 1 2 2 2 1 AAA domain ArgK PF03308.11 gi|147919233|ref|YP_687031.1| - 0.0043 15.8 0.4 0.01 14.6 0.1 1.7 2 0 0 2 2 2 1 ArgK protein SbcCD_C PF13558.1 gi|147919233|ref|YP_687031.1| - 0.0046 16.8 0.1 0.057 13.3 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|147919233|ref|YP_687031.1| - 0.0063 16.6 0.2 0.03 14.4 0.2 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|147919233|ref|YP_687031.1| - 0.0098 14.5 0.1 0.76 8.2 0.2 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|147919233|ref|YP_687031.1| - 0.011 14.9 0.1 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|147919233|ref|YP_687031.1| - 0.012 15.3 0.1 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase AAA_13 PF13166.1 gi|147919233|ref|YP_687031.1| - 0.015 13.7 0.0 0.088 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|147919233|ref|YP_687031.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|147919233|ref|YP_687031.1| - 0.017 14.8 0.1 0.041 13.6 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|147919233|ref|YP_687031.1| - 0.018 14.6 0.1 0.17 11.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|147919233|ref|YP_687031.1| - 0.019 14.4 0.1 0.058 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|147919233|ref|YP_687031.1| - 0.022 14.4 0.2 0.076 12.6 0.0 1.9 2 1 0 2 2 2 0 NACHT domain SRP54 PF00448.17 gi|147919233|ref|YP_687031.1| - 0.028 13.8 0.0 0.067 12.6 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|147919233|ref|YP_687031.1| - 0.031 14.4 0.1 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|147919233|ref|YP_687031.1| - 0.037 13.9 0.0 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|147919233|ref|YP_687031.1| - 0.046 13.6 0.1 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|147919233|ref|YP_687031.1| - 0.049 13.3 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|147919233|ref|YP_687031.1| - 0.067 13.6 0.1 0.15 12.5 0.0 1.8 2 1 0 2 2 1 0 Miro-like protein AAA_15 PF13175.1 gi|147919233|ref|YP_687031.1| - 0.068 12.2 0.1 1.4 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|147919233|ref|YP_687031.1| - 0.076 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|147919233|ref|YP_687031.1| - 0.097 11.5 0.7 0.15 10.8 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain UbiA PF01040.13 gi|147919234|ref|YP_687030.1| - 7e-27 94.2 32.2 9.9e-27 93.7 22.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4337 PF14235.1 gi|147919234|ref|YP_687030.1| - 0.018 14.8 0.1 0.018 14.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF3215 PF11503.3 gi|147919235|ref|YP_687029.1| - 0.06 12.9 0.1 2.1 8.0 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3215) PDR_assoc PF08370.6 gi|147919236|ref|YP_687028.1| - 0.068 12.6 0.0 0.083 12.4 0.0 1.2 1 0 0 1 1 1 0 Plant PDR ABC transporter associated DDE_Tnp_IS66 PF03050.9 gi|147919237|ref|YP_687027.1| - 0.0035 16.6 0.1 2.1 7.5 0.0 2.1 2 0 0 2 2 2 2 Transposase IS66 family DUF3493 PF11998.3 gi|147919237|ref|YP_687027.1| - 0.044 13.6 1.8 6.9 6.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3493) DUF3697 PF12478.3 gi|147919237|ref|YP_687027.1| - 0.055 13.1 3.6 1.5 8.5 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-associated protein 2 PDR_assoc PF08370.6 gi|147919237|ref|YP_687027.1| - 0.35 10.4 1.7 20 4.7 0.1 2.4 2 0 0 2 2 2 0 Plant PDR ABC transporter associated Aminotran_1_2 PF00155.16 gi|147919238|ref|YP_687026.1| - 6.8e-47 160.1 0.0 8e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|147919238|ref|YP_687026.1| - 0.0027 16.4 0.0 0.008 14.9 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V NO_synthase PF02898.10 gi|147919238|ref|YP_687026.1| - 0.0069 15.0 0.0 0.01 14.5 0.0 1.2 1 0 0 1 1 1 1 Nitric oxide synthase, oxygenase domain CobD_Cbib PF03186.8 gi|147919239|ref|YP_687025.1| - 1.6e-94 316.3 0.0 2e-94 315.9 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|147919240|ref|YP_687024.1| - 4e-47 160.7 15.7 5.3e-47 160.3 10.9 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.2 gi|147919241|ref|YP_687023.1| - 9.8e-14 51.7 0.0 1.1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|147919241|ref|YP_687023.1| - 3.5e-09 36.6 0.0 1.8e-08 34.2 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|147919241|ref|YP_687023.1| - 5.6e-06 26.0 0.0 9.4e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF881 PF05949.7 gi|147919241|ref|YP_687023.1| - 0.036 13.5 0.2 0.059 12.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) Astacin PF01400.19 gi|147919241|ref|YP_687023.1| - 0.06 12.7 0.0 0.09 12.1 0.0 1.2 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) DUF1743 PF08489.6 gi|147919242|ref|YP_687022.1| - 4.3e-28 97.4 0.1 5.4e-26 90.6 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1743) TPP_enzyme_C PF02775.16 gi|147919244|ref|YP_687020.1| - 8e-10 38.4 0.4 1.8e-09 37.3 0.3 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|147919244|ref|YP_687020.1| - 8.7e-05 22.1 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DUF4371 PF14291.1 gi|147919244|ref|YP_687020.1| - 0.061 12.8 0.0 0.094 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) TPP_enzyme_N PF02776.13 gi|147919244|ref|YP_687020.1| - 0.12 11.8 3.0 0.34 10.3 0.5 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SAM_MT PF04445.8 gi|147919244|ref|YP_687020.1| - 0.13 11.4 0.1 0.24 10.5 0.1 1.4 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase HMGL-like PF00682.14 gi|147919248|ref|YP_687016.1| - 5.2e-75 252.1 1.0 7.3e-75 251.6 0.7 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|147919248|ref|YP_687016.1| - 0.00041 19.6 0.3 0.0016 17.7 0.0 2.0 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Aconitase PF00330.15 gi|147919249|ref|YP_687015.1| - 9.1e-83 278.2 0.8 1.2e-55 188.8 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Methyltransf_19 PF04672.7 gi|147919249|ref|YP_687015.1| - 0.059 12.6 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl methyltransferase DUF521 PF04412.8 gi|147919249|ref|YP_687015.1| - 0.09 11.3 0.0 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|147919250|ref|YP_687014.1| - 1.2e-20 73.9 0.1 2.8e-20 72.7 0.0 1.6 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|147919250|ref|YP_687014.1| - 0.00015 21.2 0.0 0.0026 17.2 0.0 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Iso_dh PF00180.15 gi|147919251|ref|YP_687013.1| - 1.4e-91 307.0 0.0 1.7e-91 306.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Abi PF02517.11 gi|147919253|ref|YP_687011.1| - 1.8e-15 56.8 6.6 1.8e-15 56.8 4.6 3.9 3 1 0 3 3 3 1 CAAX protease self-immunity Peptidase_M50 PF02163.17 gi|147919253|ref|YP_687011.1| - 0.0041 16.1 0.9 0.015 14.2 0.6 2.2 1 1 1 2 2 2 1 Peptidase family M50 SIMPL PF04402.9 gi|147919254|ref|YP_687010.1| - 6.6e-51 173.1 7.6 7.6e-51 172.9 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) IRS PF02174.12 gi|147919256|ref|YP_687008.1| - 0.087 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 PTB domain (IRS-1 type) PALP PF00291.20 gi|147919258|ref|YP_687006.1| - 6.4e-41 140.5 0.2 9.2e-41 140.0 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N_2 PF13602.1 gi|147919259|ref|YP_687005.1| - 6.2e-26 91.7 0.9 1.3e-25 90.7 0.1 1.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|147919259|ref|YP_687005.1| - 3.2e-15 55.8 0.1 6.6e-15 54.8 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|147919259|ref|YP_687005.1| - 9.2e-14 51.1 0.2 5.9e-12 45.3 0.0 2.4 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain DUF2493 PF10686.4 gi|147919259|ref|YP_687005.1| - 0.0046 16.4 0.3 0.014 14.9 0.2 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2493) adh_short PF00106.20 gi|147919259|ref|YP_687005.1| - 0.02 14.8 0.7 0.032 14.1 0.1 1.8 2 0 0 2 2 2 0 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|147919259|ref|YP_687005.1| - 0.023 14.6 0.2 0.038 14.0 0.2 1.4 1 0 0 1 1 1 0 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|147919259|ref|YP_687005.1| - 0.027 14.2 0.2 0.053 13.3 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltransf_11 PF08241.7 gi|147919259|ref|YP_687005.1| - 0.047 14.1 0.1 10 6.6 0.2 2.9 2 1 0 2 2 2 0 Methyltransferase domain ADH_zinc_N_2 PF13602.1 gi|147919260|ref|YP_687004.1| - 3.5e-28 99.0 1.4 6.4e-28 98.1 0.4 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|147919260|ref|YP_687004.1| - 1.3e-17 63.5 0.4 2.2e-17 62.8 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|147919260|ref|YP_687004.1| - 1.3e-14 53.9 0.0 2.1e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain DUF2855 PF11017.3 gi|147919260|ref|YP_687004.1| - 0.013 14.6 0.3 0.074 12.1 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2855) DUF2493 PF10686.4 gi|147919260|ref|YP_687004.1| - 0.014 14.8 0.3 0.028 13.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2493) ELFV_dehydrog PF00208.16 gi|147919260|ref|YP_687004.1| - 0.1 12.1 0.0 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RuvB_N PF05496.7 gi|147919261|ref|YP_687003.1| - 2.4e-79 265.6 0.1 3.6e-79 265.0 0.1 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus RuvB_C PF05491.8 gi|147919261|ref|YP_687003.1| - 2.7e-34 116.5 0.0 4.7e-34 115.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus AAA PF00004.24 gi|147919261|ref|YP_687003.1| - 1.7e-09 38.0 0.0 1.5e-08 34.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|147919261|ref|YP_687003.1| - 7.9e-05 22.3 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|147919261|ref|YP_687003.1| - 0.1 12.0 0.0 0.25 10.7 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain RuvA_N PF01330.16 gi|147919262|ref|YP_687002.1| - 2.9e-15 55.8 0.0 5.4e-15 54.9 0.0 1.5 1 0 0 1 1 1 1 RuvA N terminal domain HHH_5 PF14520.1 gi|147919262|ref|YP_687002.1| - 1.7e-11 44.0 1.1 2.8e-11 43.4 0.1 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain RuvA_C PF07499.8 gi|147919262|ref|YP_687002.1| - 9.7e-09 35.2 0.7 2e-08 34.2 0.5 1.6 1 0 0 1 1 1 1 RuvA, C-terminal domain HHH PF00633.18 gi|147919262|ref|YP_687002.1| - 0.0002 20.8 0.6 0.35 10.6 0.0 2.9 2 1 0 2 2 2 2 Helix-hairpin-helix motif UBA PF00627.26 gi|147919262|ref|YP_687002.1| - 0.0055 16.5 0.1 0.36 10.7 0.0 2.5 2 0 0 2 2 2 1 UBA/TS-N domain Transposase_20 PF02371.11 gi|147919262|ref|YP_687002.1| - 0.0072 16.4 0.1 0.86 9.7 0.0 2.3 2 0 0 2 2 2 1 Transposase IS116/IS110/IS902 family DNA_pol_lambd_f PF10391.4 gi|147919262|ref|YP_687002.1| - 0.029 13.9 0.0 0.59 9.7 0.0 2.3 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda IMS_HHH PF11798.3 gi|147919262|ref|YP_687002.1| - 0.061 13.4 0.5 0.17 11.9 0.0 2.0 2 0 0 2 2 2 0 IMS family HHH motif RuvC PF02075.12 gi|147919263|ref|YP_687001.1| - 8e-55 184.7 0.3 9.2e-55 184.5 0.2 1.0 1 0 0 1 1 1 1 Crossover junction endodeoxyribonuclease RuvC zf-ribbon_3 PF13248.1 gi|147919264|ref|YP_687000.1| - 6.7e-08 31.5 6.5 0.00013 21.0 0.5 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|147919264|ref|YP_687000.1| - 6.5e-07 29.0 10.2 1.1e-06 28.2 7.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|147919264|ref|YP_687000.1| - 1.3e-06 27.6 7.8 0.00016 20.9 0.8 2.4 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|147919264|ref|YP_687000.1| - 0.00094 18.8 7.8 0.0017 18.0 0.3 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 HEAT_2 PF13646.1 gi|147919264|ref|YP_687000.1| - 0.029 14.6 0.0 0.091 13.0 0.0 1.8 1 0 0 1 1 1 0 HEAT repeats Mu-like_Com PF10122.4 gi|147919264|ref|YP_687000.1| - 1.7 7.7 5.7 0.7 9.0 1.2 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-C2HC5 PF06221.8 gi|147919264|ref|YP_687000.1| - 2.4 7.9 8.6 11 5.8 2.2 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-RanBP PF00641.13 gi|147919264|ref|YP_687000.1| - 7.1 5.8 8.9 0.84 8.8 1.4 2.4 2 1 0 2 2 2 0 Zn-finger in Ran binding protein and others CarboxypepD_reg PF13620.1 gi|147919265|ref|YP_686999.1| - 1.8e-08 34.2 2.4 6.5e-08 32.5 1.6 2.1 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919265|ref|YP_686999.1| - 0.0036 17.3 0.1 0.0099 15.9 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|147919265|ref|YP_686999.1| - 0.0085 15.9 0.3 0.36 10.7 0.0 2.4 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.16 gi|147919265|ref|YP_686999.1| - 0.018 14.2 0.9 0.3 10.3 0.4 2.1 2 0 0 2 2 2 0 Dioxygenase fn3_3 PF14686.1 gi|147919265|ref|YP_686999.1| - 0.048 13.7 0.9 0.095 12.8 0.6 1.5 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II DUF2012 PF09430.5 gi|147919265|ref|YP_686999.1| - 0.06 13.1 0.0 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2012) Desulfoferrodox PF01880.13 gi|147919266|ref|YP_686998.1| - 1.6e-29 101.9 0.0 1.9e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 Desulfoferrodoxin MMR_HSR1_C PF08438.5 gi|147919267|ref|YP_686997.1| - 2.8e-36 124.0 0.1 6.7e-36 122.8 0.0 1.7 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|147919267|ref|YP_686997.1| - 4.5e-16 58.8 0.0 1.1e-15 57.6 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|147919267|ref|YP_686997.1| - 3.9e-12 45.8 0.0 7.7e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|147919267|ref|YP_686997.1| - 3.3e-09 36.2 0.0 2.3e-06 26.9 0.0 2.7 3 0 0 3 3 3 2 Ferrous iron transport protein B Peptidase_MA_2 PF13485.1 gi|147919268|ref|YP_686996.1| - 7.9e-13 48.5 0.6 1.3e-12 47.8 0.4 1.4 1 0 0 1 1 1 1 Peptidase MA superfamily CarboxypepD_reg PF13620.1 gi|147919268|ref|YP_686996.1| - 2.7e-10 40.1 3.6 6.7e-10 38.8 2.5 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919268|ref|YP_686996.1| - 8.8e-07 28.8 0.5 1.9e-06 27.8 0.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|147919268|ref|YP_686996.1| - 1.1e-05 25.1 1.9 2.1e-05 24.2 0.4 2.0 2 0 0 2 2 2 1 Prophage tail fibre N-terminal Big_1 PF02369.11 gi|147919268|ref|YP_686996.1| - 5.2e-05 23.0 0.4 0.00013 21.7 0.3 1.7 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) MIase PF02426.11 gi|147919268|ref|YP_686996.1| - 0.17 11.6 0.1 0.59 9.9 0.0 1.8 2 0 0 2 2 2 0 Muconolactone delta-isomerase TFIIE_alpha PF02002.12 gi|147919269|ref|YP_686995.1| - 0.0013 18.1 0.1 0.0018 17.7 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_45 PF14947.1 gi|147919269|ref|YP_686995.1| - 0.0015 18.3 0.1 0.0029 17.4 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix Sulfolobus_pRN PF05584.6 gi|147919269|ref|YP_686995.1| - 0.0015 18.4 0.1 0.0024 17.7 0.1 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_27 PF13463.1 gi|147919269|ref|YP_686995.1| - 0.049 13.9 0.2 0.099 12.9 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|147919269|ref|YP_686995.1| - 0.065 12.6 0.1 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CarboxypepD_reg PF13620.1 gi|147919270|ref|YP_686994.1| - 1.3e-19 70.0 10.4 6.2e-13 48.6 0.9 2.2 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919270|ref|YP_686994.1| - 1.3e-09 37.9 1.6 2.5e-06 27.4 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147919270|ref|YP_686994.1| - 9.8e-09 34.8 3.9 5.7e-05 22.7 0.1 3.4 3 1 1 4 4 4 2 Cna protein B-type domain MG1 PF11974.3 gi|147919270|ref|YP_686994.1| - 1.5e-05 25.4 0.1 0.00053 20.4 0.1 2.3 1 1 0 2 2 2 1 Alpha-2-macroglobulin MG1 domain DUF4369 PF14289.1 gi|147919270|ref|YP_686994.1| - 0.0017 18.3 0.3 0.0069 16.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4369) TetR_N PF00440.18 gi|147919271|ref|YP_686993.1| - 1.1e-11 44.1 0.6 3.3e-11 42.6 0.1 2.0 2 1 1 3 3 3 1 Bacterial regulatory proteins, tetR family N6_N4_Mtase PF01555.13 gi|147919272|ref|YP_686992.1| - 2.1e-46 158.3 0.0 3.3e-46 157.6 0.0 1.3 1 1 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|147919272|ref|YP_686992.1| - 8.5e-16 58.0 0.0 1.1e-08 35.1 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|147919272|ref|YP_686992.1| - 1e-06 28.4 0.0 5.6e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|147919272|ref|YP_686992.1| - 0.0099 16.3 0.0 2.7 8.5 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919272|ref|YP_686992.1| - 0.026 15.1 0.0 0.11 13.0 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919272|ref|YP_686992.1| - 0.043 13.3 0.0 0.73 9.4 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Abi PF02517.11 gi|147919276|ref|YP_686988.1| - 8.8e-07 28.9 5.3 8.8e-07 28.9 3.7 3.1 1 1 1 2 2 2 1 CAAX protease self-immunity HAD_2 PF13419.1 gi|147919277|ref|YP_686987.1| - 1.3e-24 87.3 0.0 1.6e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|147919277|ref|YP_686987.1| - 3.1e-09 36.4 0.0 5.5e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|147919277|ref|YP_686987.1| - 3.6e-07 30.8 0.0 0.00088 19.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147919277|ref|YP_686987.1| - 3.4e-05 24.0 0.1 8.7e-05 22.7 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|147919277|ref|YP_686987.1| - 0.049 12.9 0.0 6.7 6.0 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Cupin_2 PF07883.6 gi|147919278|ref|YP_686986.1| - 2.4e-09 36.5 0.1 3.2e-09 36.1 0.1 1.2 1 0 0 1 1 1 1 Cupin domain DUF4437 PF14499.1 gi|147919278|ref|YP_686986.1| - 0.008 15.1 0.0 0.01 14.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4437) Cupin_3 PF05899.7 gi|147919278|ref|YP_686986.1| - 0.01 15.1 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_7 PF12973.2 gi|147919278|ref|YP_686986.1| - 0.013 15.3 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain AraC_binding PF02311.14 gi|147919278|ref|YP_686986.1| - 0.013 15.2 0.1 0.018 14.7 0.1 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|147919278|ref|YP_686986.1| - 0.02 14.4 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Ca_chan_IQ PF08763.6 gi|147919278|ref|YP_686986.1| - 0.039 13.1 0.0 0.075 12.2 0.0 1.4 1 0 0 1 1 1 0 Voltage gated calcium channel IQ domain 7TMR-DISM_7TM PF07695.6 gi|147919280|ref|YP_686984.1| - 0.39 10.3 29.1 0.15 11.6 14.5 2.3 1 1 1 2 2 2 0 7TM diverse intracellular signalling Glycos_transf_4 PF00953.16 gi|147919280|ref|YP_686984.1| - 0.69 9.6 0.1 0.69 9.6 0.0 2.5 2 1 0 2 2 2 0 Glycosyl transferase family 4 YfhO PF09586.5 gi|147919280|ref|YP_686984.1| - 3.9 5.3 13.9 2.9 5.7 7.5 1.9 2 0 0 2 2 2 0 Bacterial membrane protein YfhO Siva PF05458.7 gi|147919281|ref|YP_686983.1| - 3.3 7.2 7.2 0.71 9.4 0.4 2.0 1 1 1 2 2 2 0 Cd27 binding protein (Siva) HTH_45 PF14947.1 gi|147919282|ref|YP_686982.1| - 9e-05 22.2 0.2 0.00011 21.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Snf7 PF03357.16 gi|147919282|ref|YP_686982.1| - 0.011 15.1 0.1 0.019 14.3 0.0 1.4 1 1 0 1 1 1 0 Snf7 PadR PF03551.9 gi|147919282|ref|YP_686982.1| - 0.026 14.3 0.1 0.032 14.0 0.1 1.3 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family RQC PF09382.5 gi|147919282|ref|YP_686982.1| - 0.032 13.9 0.1 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 RQC domain HTH_27 PF13463.1 gi|147919282|ref|YP_686982.1| - 0.033 14.4 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.12 gi|147919282|ref|YP_686982.1| - 0.064 12.8 0.2 0.092 12.3 0.2 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.14 gi|147919282|ref|YP_686982.1| - 0.1 12.3 0.3 0.14 11.8 0.2 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CheW PF01584.14 gi|147919283|ref|YP_686981.1| - 3.6e-30 104.2 1.3 3.6e-30 104.2 0.9 1.8 2 0 0 2 2 2 1 CheW-like domain CheC PF04509.7 gi|147919283|ref|YP_686981.1| - 8.7e-28 95.7 3.0 7.6e-14 51.1 0.1 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|147919283|ref|YP_686981.1| - 1e-06 28.4 0.6 0.00071 19.3 0.0 3.2 3 0 0 3 3 3 2 Chemotaxis phosphatase CheX B3_4 PF03483.12 gi|147919284|ref|YP_686980.1| - 8.1e-29 100.3 0.0 1e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain Glutaredoxin PF00462.19 gi|147919285|ref|YP_686979.1| - 7.3e-13 48.3 0.1 9.3e-13 47.9 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|147919285|ref|YP_686979.1| - 2.5e-07 30.3 0.0 3.2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain ArsC PF03960.10 gi|147919285|ref|YP_686979.1| - 2.6e-07 30.7 0.2 0.00023 21.1 0.1 2.1 1 1 1 2 2 2 2 ArsC family Thioredoxin_2 PF13098.1 gi|147919285|ref|YP_686979.1| - 3.1e-07 30.5 0.4 0.015 15.5 0.1 2.1 1 1 1 2 2 2 2 Thioredoxin-like domain DUF836 PF05768.9 gi|147919285|ref|YP_686979.1| - 3.9e-05 23.8 0.0 4e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N_3 PF13417.1 gi|147919285|ref|YP_686979.1| - 0.0023 18.1 0.0 0.0025 18.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Ish1 PF10281.4 gi|147919285|ref|YP_686979.1| - 0.0048 16.9 0.2 0.0083 16.1 0.1 1.4 1 0 0 1 1 1 1 Putative stress-responsive nuclear envelope protein Thioredoxin_4 PF13462.1 gi|147919285|ref|YP_686979.1| - 0.014 15.4 0.4 0.48 10.4 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin Thioredoxin PF00085.15 gi|147919285|ref|YP_686979.1| - 0.018 14.7 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin HeH PF12949.2 gi|147919285|ref|YP_686979.1| - 0.085 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 HeH/LEM domain DUF4164 PF13747.1 gi|147919286|ref|YP_686978.1| - 0.002 18.2 1.8 0.002 18.2 1.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4164) DUF3450 PF11932.3 gi|147919286|ref|YP_686978.1| - 0.0054 16.0 1.2 0.0061 15.8 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) ESCRT-II PF05871.7 gi|147919286|ref|YP_686978.1| - 0.041 13.7 0.3 0.056 13.3 0.2 1.1 1 0 0 1 1 1 0 ESCRT-II complex subunit Cep57_MT_bd PF06657.8 gi|147919286|ref|YP_686978.1| - 0.061 13.2 1.6 0.27 11.2 0.4 2.2 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Bacillus_HBL PF05791.6 gi|147919286|ref|YP_686978.1| - 0.068 12.5 0.5 0.078 12.3 0.3 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Tup_N PF08581.5 gi|147919286|ref|YP_686978.1| - 0.18 12.0 3.5 2.5 8.3 0.2 2.2 1 1 1 2 2 2 0 Tup N-terminal Med4 PF10018.4 gi|147919286|ref|YP_686978.1| - 0.78 9.1 3.5 0.3 10.4 0.6 1.5 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 TPR_MLP1_2 PF07926.7 gi|147919286|ref|YP_686978.1| - 1.4 8.6 5.5 0.3 10.8 1.2 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein ABC_tran PF00005.22 gi|147919287|ref|YP_686977.1| - 3.1e-21 76.1 0.0 4.4e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919287|ref|YP_686977.1| - 1.2e-10 41.8 0.9 1.3e-06 28.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|147919287|ref|YP_686977.1| - 0.00012 21.2 0.1 0.0016 17.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|147919287|ref|YP_686977.1| - 0.00016 21.6 0.0 0.0043 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|147919287|ref|YP_686977.1| - 0.00077 18.9 0.2 0.0013 18.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147919287|ref|YP_686977.1| - 0.013 15.8 0.3 0.022 15.1 0.2 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|147919287|ref|YP_686977.1| - 0.036 13.1 0.0 0.061 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DUF258 PF03193.11 gi|147919287|ref|YP_686977.1| - 0.065 12.4 0.1 0.1 11.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|147919287|ref|YP_686977.1| - 0.099 12.5 0.0 0.32 10.9 0.0 1.8 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|147919287|ref|YP_686977.1| - 0.13 11.3 0.0 0.27 10.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Lig_chan PF00060.21 gi|147919288|ref|YP_686976.1| - 9.4 5.9 10.4 7.2 6.3 2.0 3.4 1 1 1 2 2 2 0 Ligand-gated ion channel TPR_12 PF13424.1 gi|147919289|ref|YP_686975.1| - 8.9e-34 115.2 13.5 2.1e-15 56.4 1.7 3.5 3 1 1 4 4 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919289|ref|YP_686975.1| - 1.3e-31 106.9 10.5 1.1e-07 31.1 0.8 5.6 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147919289|ref|YP_686975.1| - 9.4e-31 105.2 14.9 8.1e-13 47.8 0.6 4.0 2 1 1 4 4 4 3 TPR repeat TPR_2 PF07719.12 gi|147919289|ref|YP_686975.1| - 9.8e-27 90.7 15.5 9.7e-06 25.1 0.2 6.4 7 0 0 7 7 6 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919289|ref|YP_686975.1| - 8.4e-23 78.3 13.8 0.00012 21.5 0.2 6.0 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919289|ref|YP_686975.1| - 3.6e-22 76.4 11.8 4.6e-07 29.1 0.7 5.5 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_10 PF13374.1 gi|147919289|ref|YP_686975.1| - 1.8e-21 75.3 13.5 2.7e-05 23.9 0.1 5.8 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919289|ref|YP_686975.1| - 3.3e-16 59.4 8.7 2.1e-08 34.6 0.1 4.2 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919289|ref|YP_686975.1| - 1.4e-15 56.3 11.7 0.0059 17.1 0.3 6.2 5 1 1 6 6 6 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147919289|ref|YP_686975.1| - 1.2e-09 37.9 9.2 0.11 12.9 0.6 5.5 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919289|ref|YP_686975.1| - 2.5e-09 37.3 13.3 3e-05 24.2 0.4 3.6 2 1 1 3 3 3 3 Tetratricopeptide repeat Apc5 PF12862.2 gi|147919289|ref|YP_686975.1| - 9.2e-09 35.0 0.8 0.46 10.3 0.1 4.3 1 1 3 4 4 4 2 Anaphase-promoting complex subunit 5 Rapsyn_N PF10579.4 gi|147919289|ref|YP_686975.1| - 5.7e-08 32.4 0.2 0.00071 19.3 0.0 3.5 2 2 1 3 3 3 2 Rapsyn N-terminal myristoylation and linker region RPN7 PF10602.4 gi|147919289|ref|YP_686975.1| - 9.8e-08 31.5 5.5 0.034 13.5 0.1 4.3 2 1 2 4 4 4 2 26S proteasome subunit RPN7 PPR PF01535.15 gi|147919289|ref|YP_686975.1| - 6.1e-07 28.9 5.5 0.042 13.8 0.0 5.5 5 0 0 5 5 5 1 PPR repeat TPR_17 PF13431.1 gi|147919289|ref|YP_686975.1| - 6.4e-07 29.0 9.5 0.56 10.5 0.0 6.4 6 1 0 6 6 5 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919289|ref|YP_686975.1| - 1.4e-06 28.3 4.3 0.0011 19.0 0.1 3.2 1 1 2 3 3 3 2 Anaphase-promoting complex, cyclosome, subunit 3 MIT PF04212.13 gi|147919289|ref|YP_686975.1| - 5.7e-05 22.9 3.7 2.7 7.9 0.0 4.4 3 1 1 4 4 4 1 MIT (microtubule interacting and transport) domain AP_endonuc_2 PF01261.19 gi|147919289|ref|YP_686975.1| - 9.5e-05 21.7 0.6 0.00037 19.8 0.2 2.1 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel TPR_15 PF13429.1 gi|147919289|ref|YP_686975.1| - 0.00012 21.2 3.5 0.3 10.0 0.1 3.3 1 1 1 3 3 3 2 Tetratricopeptide repeat TPR_5 PF12688.2 gi|147919289|ref|YP_686975.1| - 0.00016 21.7 4.3 0.013 15.4 0.1 3.5 1 1 3 4 4 4 1 Tetratrico peptide repeat SNAP PF14938.1 gi|147919289|ref|YP_686975.1| - 0.002 17.3 2.8 0.15 11.1 0.1 2.6 1 1 1 2 2 2 1 Soluble NSF attachment protein, SNAP PPR_2 PF13041.1 gi|147919289|ref|YP_686975.1| - 0.0085 16.0 3.5 10 6.1 0.0 4.4 4 1 1 5 5 5 0 PPR repeat family TPR_21 PF09976.4 gi|147919289|ref|YP_686975.1| - 0.015 15.2 2.9 0.26 11.2 0.0 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF2225 PF09986.4 gi|147919289|ref|YP_686975.1| - 0.018 14.5 1.4 2.4 7.5 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) PPR_3 PF13812.1 gi|147919289|ref|YP_686975.1| - 0.018 15.3 0.6 4.6 7.7 0.0 4.3 4 0 0 4 4 4 0 Pentatricopeptide repeat domain TPR_4 PF07721.9 gi|147919289|ref|YP_686975.1| - 0.023 15.0 7.0 8.8 7.0 0.0 5.7 7 0 0 7 7 5 0 Tetratricopeptide repeat His_biosynth PF00977.16 gi|147919289|ref|YP_686975.1| - 0.036 13.3 0.1 0.12 11.6 0.0 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein Sel1 PF08238.7 gi|147919289|ref|YP_686975.1| - 0.045 14.3 0.5 0.045 14.3 0.4 3.7 3 0 0 3 3 2 0 Sel1 repeat TPR_20 PF14561.1 gi|147919289|ref|YP_686975.1| - 0.056 13.5 3.9 0.43 10.7 0.2 2.9 2 2 0 2 2 2 0 Tetratricopeptide repeat DUF4071 PF13281.1 gi|147919289|ref|YP_686975.1| - 0.058 12.2 0.5 3.6 6.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4071) TPR_3 PF07720.7 gi|147919289|ref|YP_686975.1| - 0.09 12.6 4.7 7.4 6.4 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|147919289|ref|YP_686975.1| - 0.099 12.1 1.9 3 7.2 0.1 2.8 1 1 1 3 3 3 0 Foie gras liver health family 1 SHNi-TPR PF10516.4 gi|147919289|ref|YP_686975.1| - 0.18 11.0 2.4 0.69 9.2 0.0 3.0 3 0 0 3 3 3 0 SHNi-TPR Exonuc_VII_S PF02609.11 gi|147919289|ref|YP_686975.1| - 0.32 10.7 5.6 9.2 6.1 0.0 4.6 5 0 0 5 5 5 0 Exonuclease VII small subunit Fis1_TPR_C PF14853.1 gi|147919289|ref|YP_686975.1| - 1.4 8.8 0.0 1.4 8.8 0.0 3.4 4 0 0 4 4 3 0 Fis1 C-terminal tetratricopeptide repeat TFIIE_alpha PF02002.12 gi|147919290|ref|YP_686974.1| - 4.5e-05 22.9 0.0 5.5e-05 22.6 0.0 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_45 PF14947.1 gi|147919290|ref|YP_686974.1| - 0.0012 18.5 0.0 0.0017 18.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|147919290|ref|YP_686974.1| - 0.0053 17.0 0.0 0.012 15.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|147919290|ref|YP_686974.1| - 0.052 13.1 0.0 0.22 11.1 0.0 1.9 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.1 gi|147919290|ref|YP_686974.1| - 0.1 12.4 0.0 0.3 10.9 0.0 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain CMD PF02627.15 gi|147919292|ref|YP_686972.1| - 4.3e-18 64.9 0.2 5.3e-18 64.6 0.1 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family XPC-binding PF09280.6 gi|147919292|ref|YP_686972.1| - 0.062 12.7 0.0 0.14 11.6 0.0 1.6 2 0 0 2 2 2 0 XPC-binding domain PA26 PF04636.8 gi|147919292|ref|YP_686972.1| - 0.14 10.8 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) EmrE PF13536.1 gi|147919293|ref|YP_686971.1| - 0.16 12.1 4.5 0.23 11.6 3.1 1.2 1 0 0 1 1 1 0 Multidrug resistance efflux transporter TPR_2 PF07719.12 gi|147919296|ref|YP_686968.1| - 0.052 13.4 0.0 0.052 13.4 0.0 3.2 2 2 0 3 3 3 0 Tetratricopeptide repeat DUF4398 PF14346.1 gi|147919296|ref|YP_686968.1| - 0.34 10.9 0.0 0.34 10.9 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Yip1 PF04893.12 gi|147919297|ref|YP_686967.1| - 0.0091 15.5 24.9 0.014 14.8 17.2 1.4 1 1 0 1 1 1 1 Yip1 domain Lactate_perm PF02652.9 gi|147919297|ref|YP_686967.1| - 0.019 13.5 13.2 0.0059 15.1 6.7 1.7 1 1 1 2 2 2 0 L-lactate permease DUF360 PF04020.8 gi|147919297|ref|YP_686967.1| - 0.021 15.1 22.6 0.14 12.5 4.9 2.5 1 1 1 2 2 2 0 Membrane protein of unknown function ABC2_membrane_4 PF12730.2 gi|147919297|ref|YP_686967.1| - 0.11 11.6 23.6 0.12 11.4 16.3 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Peptidase_U4 PF03419.8 gi|147919297|ref|YP_686967.1| - 1.1 8.2 13.1 1.7 7.6 9.1 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA NfeD PF01957.13 gi|147919297|ref|YP_686967.1| - 1.4 9.0 19.6 4.8 7.3 8.2 2.1 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Arch_flagellin PF01917.11 gi|147919297|ref|YP_686967.1| - 2.6 7.6 6.3 3.8 7.0 4.3 1.3 1 0 0 1 1 1 0 Archaebacterial flagellin CreD PF06123.7 gi|147919297|ref|YP_686967.1| - 3.1 6.2 9.7 3.9 5.9 6.7 1.2 1 0 0 1 1 1 0 Inner membrane protein CreD DUF1212 PF06738.7 gi|147919297|ref|YP_686967.1| - 5.5 6.3 17.7 0.36 10.2 8.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) DUF1282 PF06930.7 gi|147919297|ref|YP_686967.1| - 9.5 5.8 23.7 13 5.3 16.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) RNA_pol_A_bac PF01000.21 gi|147919298|ref|YP_686966.1| - 4.7e-23 81.4 0.0 1.1e-22 80.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|147919298|ref|YP_686966.1| - 2.3e-15 55.4 0.0 2.9e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|147919298|ref|YP_686966.1| - 1.1e-07 32.1 12.0 1.1e-07 32.1 8.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919298|ref|YP_686966.1| - 2.4e-07 30.0 21.3 0.00015 21.1 2.1 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919298|ref|YP_686966.1| - 1.7e-06 28.1 13.0 1.7e-06 28.1 9.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919298|ref|YP_686966.1| - 1.8e-06 28.6 15.3 0.0024 18.5 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|147919298|ref|YP_686966.1| - 2.9e-06 26.9 11.5 2.9e-06 26.9 8.0 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919298|ref|YP_686966.1| - 0.00024 20.8 22.3 0.0049 16.6 1.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919298|ref|YP_686966.1| - 0.0031 17.3 25.2 0.014 15.2 3.2 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147919298|ref|YP_686966.1| - 0.015 15.6 3.7 0.015 15.6 2.6 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919298|ref|YP_686966.1| - 0.017 15.1 18.0 0.028 14.4 9.0 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147919298|ref|YP_686966.1| - 0.026 14.3 13.7 0.026 14.3 9.5 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919298|ref|YP_686966.1| - 0.28 11.7 20.1 0.12 12.9 1.9 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|147919298|ref|YP_686966.1| - 1.7 9.0 20.3 0.14 12.5 1.4 2.9 2 1 2 4 4 3 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.14 gi|147919299|ref|YP_686965.1| - 1.7e-43 147.2 0.6 2e-43 147.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 INTS5_N PF14837.1 gi|147919299|ref|YP_686965.1| - 0.016 14.6 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Integrator complex subunit 5 N-terminus Pilus_CpaD PF09476.5 gi|147919299|ref|YP_686965.1| - 0.029 13.8 0.4 0.038 13.4 0.3 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) S4 PF01479.20 gi|147919300|ref|YP_686964.1| - 1.3e-15 56.5 0.1 2.3e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|147919300|ref|YP_686964.1| - 0.025 14.9 1.8 0.25 11.7 1.2 2.3 1 1 0 1 1 1 0 Ribosomal protein S4/S9 N-terminal domain Flavodoxin_NdrI PF07972.6 gi|147919300|ref|YP_686964.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.3 1 0 0 1 1 1 0 NrdI Flavodoxin like Ribosomal_60s PF00428.14 gi|147919300|ref|YP_686964.1| - 0.4 11.1 12.2 0.74 10.2 8.5 1.5 1 0 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_S13 PF00416.17 gi|147919301|ref|YP_686963.1| - 2.8e-31 108.1 1.0 4e-31 107.6 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S13/S18 LZ_Tnp_IS66 PF13007.2 gi|147919301|ref|YP_686963.1| - 8.4 7.1 10.2 18 6.0 7.0 1.6 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain Microvir_H PF04687.7 gi|147919302|ref|YP_686962.1| - 0.068 12.2 1.3 0.098 11.6 0.9 1.2 1 0 0 1 1 1 0 Microvirus H protein (pilot protein) Mac PF12464.3 gi|147919304|ref|YP_686960.1| - 7e-23 80.4 0.1 2.5e-22 78.6 0.0 1.8 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|147919304|ref|YP_686960.1| - 2e-15 55.5 9.2 3.7e-12 45.1 4.8 2.7 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|147919304|ref|YP_686960.1| - 1.4e-10 40.5 6.3 2.7e-09 36.4 3.3 2.5 2 0 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase TruB_N PF01509.13 gi|147919305|ref|YP_686959.1| - 5.4e-26 91.5 0.2 7e-16 58.7 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.15 gi|147919305|ref|YP_686959.1| - 5.4e-18 64.4 2.8 7.4e-18 64.0 0.6 2.0 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.7 gi|147919305|ref|YP_686959.1| - 1.1e-15 57.2 0.1 2.1e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain Cytidylate_kin2 PF13189.1 gi|147919306|ref|YP_686958.1| - 3.6e-20 72.6 1.1 2.4e-19 69.9 0.7 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|147919306|ref|YP_686958.1| - 1.9e-15 57.7 0.1 4e-15 56.7 0.0 1.5 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|147919306|ref|YP_686958.1| - 3.7e-14 53.1 0.0 5.2e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|147919306|ref|YP_686958.1| - 6.3e-07 29.3 0.2 1.2e-05 25.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|147919306|ref|YP_686958.1| - 6.2e-06 26.1 0.1 8.8e-06 25.6 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase SKI PF01202.17 gi|147919306|ref|YP_686958.1| - 8.2e-06 25.7 0.1 0.037 13.9 0.0 2.1 2 0 0 2 2 2 2 Shikimate kinase AAA PF00004.24 gi|147919306|ref|YP_686958.1| - 1.1e-05 25.6 0.0 2e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|147919306|ref|YP_686958.1| - 1.2e-05 24.5 0.1 3.4e-05 23.0 0.0 1.7 1 1 1 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|147919306|ref|YP_686958.1| - 0.00017 21.5 0.0 0.0003 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|147919306|ref|YP_686958.1| - 0.00067 19.7 0.0 0.0011 19.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|147919306|ref|YP_686958.1| - 0.0033 16.6 0.0 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Cytidylate_kin PF02224.13 gi|147919306|ref|YP_686958.1| - 0.0052 16.2 0.0 0.0068 15.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylate kinase UPF0079 PF02367.12 gi|147919306|ref|YP_686958.1| - 0.0066 16.0 0.1 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 CoaE PF01121.15 gi|147919306|ref|YP_686958.1| - 0.0069 15.7 0.0 0.015 14.7 0.0 1.5 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA_5 PF07728.9 gi|147919306|ref|YP_686958.1| - 0.0091 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|147919306|ref|YP_686958.1| - 0.011 15.7 0.2 0.016 15.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain TIP49 PF06068.8 gi|147919306|ref|YP_686958.1| - 0.013 14.2 0.1 0.013 14.1 0.1 1.4 1 1 0 1 1 1 0 TIP49 C-terminus AAA_24 PF13479.1 gi|147919306|ref|YP_686958.1| - 0.023 14.3 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|147919306|ref|YP_686958.1| - 0.041 13.7 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain CPT PF07931.7 gi|147919306|ref|YP_686958.1| - 0.042 13.4 0.4 0.39 10.3 0.2 2.2 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_19 PF13245.1 gi|147919306|ref|YP_686958.1| - 0.065 12.9 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|147919306|ref|YP_686958.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PRK PF00485.13 gi|147919306|ref|YP_686958.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|147919306|ref|YP_686958.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|147919306|ref|YP_686958.1| - 0.19 11.3 0.7 3.3 7.2 0.1 2.1 1 1 1 2 2 2 0 AAA domain DUF106 PF01956.11 gi|147919307|ref|YP_686957.1| - 1.3e-44 151.6 11.5 1.9e-44 151.1 8.0 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 DctQ PF04290.7 gi|147919307|ref|YP_686957.1| - 0.012 15.3 2.4 0.012 15.3 1.7 2.2 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF4199 PF13858.1 gi|147919307|ref|YP_686957.1| - 0.029 14.2 11.3 0.13 12.1 5.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) DUF3671 PF12420.3 gi|147919307|ref|YP_686957.1| - 0.032 14.1 6.3 1.9 8.4 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function Adeno_E3B PF03376.9 gi|147919307|ref|YP_686957.1| - 0.047 13.6 1.2 0.38 10.7 0.0 2.3 2 0 0 2 2 2 0 Adenovirus E3B protein Tetraspannin PF00335.15 gi|147919307|ref|YP_686957.1| - 0.15 11.3 4.4 1.2 8.3 3.1 2.2 1 1 0 1 1 1 0 Tetraspanin family DUF4446 PF14584.1 gi|147919307|ref|YP_686957.1| - 0.19 11.5 1.2 0.35 10.6 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) TRAM1 PF08390.6 gi|147919307|ref|YP_686957.1| - 0.39 10.2 3.9 1.9 8.0 0.1 2.6 2 0 0 2 2 2 0 TRAM1-like protein DUF106 PF01956.11 gi|147919308|ref|YP_686956.1| - 4.1e-45 153.3 9.0 6.3e-45 152.7 6.2 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|147919308|ref|YP_686956.1| - 0.00016 21.4 7.5 0.00016 21.4 5.2 1.9 1 1 1 2 2 2 1 60Kd inner membrane protein DUF4446 PF14584.1 gi|147919308|ref|YP_686956.1| - 0.02 14.7 0.5 0.039 13.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2208 PF09973.4 gi|147919308|ref|YP_686956.1| - 0.021 14.0 5.0 0.036 13.2 3.4 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2208) GCS PF03074.11 gi|147919308|ref|YP_686956.1| - 0.031 13.3 0.1 0.038 13.0 0.1 1.1 1 0 0 1 1 1 0 Glutamate-cysteine ligase Adeno_E3B PF03376.9 gi|147919308|ref|YP_686956.1| - 0.037 13.9 2.2 0.18 11.7 0.1 2.3 2 0 0 2 2 2 0 Adenovirus E3B protein PIG-P PF08510.7 gi|147919308|ref|YP_686956.1| - 0.15 11.7 7.0 0.27 10.8 0.2 2.6 2 1 0 2 2 2 0 PIG-P DUF1686 PF07937.6 gi|147919308|ref|YP_686956.1| - 0.17 11.4 1.6 0.82 9.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1686) PrgI PF12666.2 gi|147919308|ref|YP_686956.1| - 0.18 11.9 12.3 0.47 10.6 0.8 2.7 2 1 0 2 2 2 0 PrgI family protein DctQ PF04290.7 gi|147919308|ref|YP_686956.1| - 0.58 9.9 13.7 0.054 13.2 1.3 2.1 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF4199 PF13858.1 gi|147919308|ref|YP_686956.1| - 1.7 8.5 13.0 0.76 9.6 5.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) TRAM1 PF08390.6 gi|147919308|ref|YP_686956.1| - 2.5 7.6 5.6 1.3 8.6 0.3 2.4 2 0 0 2 2 2 0 TRAM1-like protein DUF4282 PF14110.1 gi|147919308|ref|YP_686956.1| - 7.6 6.8 13.1 3.4 7.9 0.2 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4282) ADK PF00406.17 gi|147919309|ref|YP_686955.1| - 2.4e-57 193.0 0.0 2.9e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|147919309|ref|YP_686955.1| - 4.5e-18 64.6 3.5 8.6e-18 63.7 1.8 2.0 2 0 0 2 2 2 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|147919309|ref|YP_686955.1| - 1.5e-10 41.9 0.9 7.7e-10 39.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|147919309|ref|YP_686955.1| - 2.7e-05 24.4 0.9 0.00017 21.9 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|147919309|ref|YP_686955.1| - 0.0028 17.5 0.0 0.0045 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|147919309|ref|YP_686955.1| - 0.0068 16.6 0.0 0.014 15.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DZR PF12773.2 gi|147919309|ref|YP_686955.1| - 0.0099 15.6 0.2 0.016 14.9 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon RuvB_N PF05496.7 gi|147919309|ref|YP_686955.1| - 0.017 14.1 0.0 0.036 13.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Thymidylate_kin PF02223.12 gi|147919309|ref|YP_686955.1| - 0.021 14.2 0.1 0.31 10.3 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase TF_Zn_Ribbon PF08271.7 gi|147919309|ref|YP_686955.1| - 0.027 13.7 0.6 0.051 12.8 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DUF1451 PF07295.6 gi|147919309|ref|YP_686955.1| - 0.044 13.5 0.1 0.078 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) HypA PF01155.14 gi|147919309|ref|YP_686955.1| - 0.048 13.3 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family SKI PF01202.17 gi|147919309|ref|YP_686955.1| - 0.049 13.4 0.0 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 Shikimate kinase AAA_28 PF13521.1 gi|147919309|ref|YP_686955.1| - 0.083 12.8 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Prok-RING_1 PF14446.1 gi|147919309|ref|YP_686955.1| - 0.12 12.1 3.5 1.3 8.8 0.2 2.3 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 MtrG PF04210.8 gi|147919309|ref|YP_686955.1| - 0.12 12.0 0.6 0.38 10.4 0.0 2.1 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G GATA PF00320.22 gi|147919309|ref|YP_686955.1| - 3.5 7.0 5.5 13 5.1 0.1 2.6 3 0 0 3 3 3 0 GATA zinc finger SecY PF00344.15 gi|147919310|ref|YP_686954.1| - 3.8e-97 325.3 26.2 4.8e-97 324.9 18.1 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|147919310|ref|YP_686954.1| - 5.9e-10 38.4 2.1 1.9e-09 36.8 1.5 1.9 1 0 0 1 1 1 1 Plug domain of Sec61p Ninjurin PF04923.7 gi|147919310|ref|YP_686954.1| - 2.7 7.7 5.6 1.2 8.8 0.9 2.6 2 1 1 3 3 3 0 Ninjurin Ribosomal_L18e PF00828.14 gi|147919311|ref|YP_686953.1| - 1.1e-28 100.1 0.5 1.4e-28 99.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 FinO_N PF12602.3 gi|147919311|ref|YP_686953.1| - 0.11 12.8 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Fertility inhibition protein N terminal Ribosomal_L30 PF00327.15 gi|147919312|ref|YP_686952.1| - 2.7e-21 74.9 0.1 4.3e-21 74.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|147919313|ref|YP_686951.1| - 1.7e-25 88.5 2.6 3.5e-25 87.5 1.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|147919313|ref|YP_686951.1| - 2.2e-25 87.7 0.6 1.4e-24 85.1 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|147919314|ref|YP_686950.1| - 7.1e-32 110.1 1.3 9.4e-32 109.7 0.9 1.2 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|147919315|ref|YP_686949.1| - 3.6e-59 198.7 9.6 4.2e-59 198.5 6.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.13 gi|147919316|ref|YP_686948.1| - 6.6e-35 119.4 1.0 6.6e-35 119.4 0.7 1.8 2 0 0 2 2 2 1 Ribosomal protein L32 Ycf1 PF05758.7 gi|147919316|ref|YP_686948.1| - 1.2 6.7 5.1 1.1 6.9 3.6 1.1 1 0 0 1 1 1 0 Ycf1 Peptidase_S64 PF08192.6 gi|147919316|ref|YP_686948.1| - 3.3 5.9 6.0 4.1 5.6 4.2 1.1 1 0 0 1 1 1 0 Peptidase family S64 Borrelia_P83 PF05262.6 gi|147919316|ref|YP_686948.1| - 6.1 4.9 15.6 8 4.6 10.8 1.2 1 0 0 1 1 1 0 Borrelia P83/100 protein Ribosomal_L6 PF00347.18 gi|147919317|ref|YP_686947.1| - 8.2e-27 93.5 8.3 6.7e-16 58.5 1.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF970 PF06153.6 gi|147919317|ref|YP_686947.1| - 0.23 11.4 3.0 0.43 10.5 0.4 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF970) BON PF04972.12 gi|147919317|ref|YP_686947.1| - 0.42 10.4 5.3 1.3 8.8 0.2 3.3 4 0 0 4 4 4 0 BON domain Ribosomal_S8 PF00410.14 gi|147919318|ref|YP_686946.1| - 1.1e-27 96.4 0.0 1.3e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|147919319|ref|YP_686945.1| - 2.9e-19 68.1 4.4 2.9e-19 68.1 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DZR PF12773.2 gi|147919319|ref|YP_686945.1| - 0.0047 16.7 0.2 0.0064 16.2 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2318 PF10080.4 gi|147919319|ref|YP_686945.1| - 0.0059 16.3 0.5 0.006 16.3 0.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) DUF4428 PF14471.1 gi|147919319|ref|YP_686945.1| - 0.0073 16.0 0.3 0.019 14.7 0.1 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|147919319|ref|YP_686945.1| - 0.026 14.4 0.9 0.03 14.1 0.6 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family DUF1451 PF07295.6 gi|147919319|ref|YP_686945.1| - 0.036 13.8 0.4 0.04 13.6 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE_2 PF02318.11 gi|147919319|ref|YP_686945.1| - 0.075 12.9 0.3 0.078 12.8 0.2 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Prim_Zn_Ribbon PF08273.7 gi|147919319|ref|YP_686945.1| - 0.081 13.0 4.8 1.7 8.8 0.7 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|147919319|ref|YP_686945.1| - 0.095 12.1 1.6 0.15 11.5 1.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|147919319|ref|YP_686945.1| - 0.1 11.8 0.5 0.1 11.8 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zf-P11 PF03854.9 gi|147919319|ref|YP_686945.1| - 0.12 11.8 0.7 0.16 11.4 0.5 1.2 1 0 0 1 1 1 0 P-11 zinc finger DUF4182 PF13790.1 gi|147919319|ref|YP_686945.1| - 0.14 12.0 1.1 4.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) Zn_Tnp_IS1595 PF12760.2 gi|147919319|ref|YP_686945.1| - 0.18 11.6 3.6 0.21 11.4 2.5 1.1 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Sgf11 PF08209.6 gi|147919319|ref|YP_686945.1| - 0.28 10.5 4.4 1.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.1 gi|147919319|ref|YP_686945.1| - 0.29 10.6 3.5 0.31 10.6 0.4 2.0 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|147919319|ref|YP_686945.1| - 0.31 10.7 2.8 0.73 9.6 1.9 1.6 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C4_ClpX PF06689.8 gi|147919319|ref|YP_686945.1| - 0.59 9.6 2.6 7.9 6.0 1.8 2.1 1 1 1 2 2 2 0 ClpX C4-type zinc finger Ribosomal_L40e PF01020.12 gi|147919319|ref|YP_686945.1| - 0.61 9.7 6.7 5.6 6.6 0.2 2.1 1 1 1 2 2 2 0 Ribosomal L40e family FYVE PF01363.16 gi|147919319|ref|YP_686945.1| - 0.83 9.5 4.7 1.3 8.9 3.2 1.4 1 1 0 1 1 1 0 FYVE zinc finger Rsm1 PF08600.5 gi|147919319|ref|YP_686945.1| - 1.4 8.8 5.8 3.3 7.6 0.3 2.0 1 1 1 2 2 2 0 Rsm1-like Ribosomal_L5_C PF00673.16 gi|147919320|ref|YP_686944.1| - 3.3e-26 90.8 0.0 5e-26 90.2 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|147919320|ref|YP_686944.1| - 1.8e-18 66.0 1.6 4.4e-18 64.7 0.5 1.9 2 0 0 2 2 2 1 Ribosomal protein L5 NgoMIV_restric PF09015.5 gi|147919320|ref|YP_686944.1| - 0.022 13.7 0.0 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 NgoMIV restriction enzyme Ribosomal_S4e PF00900.15 gi|147919321|ref|YP_686943.1| - 1.2e-24 85.7 1.2 1.8e-24 85.1 0.2 1.8 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|147919321|ref|YP_686943.1| - 4e-13 48.9 2.8 1.1e-12 47.6 1.9 1.7 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|147919321|ref|YP_686943.1| - 9.4e-08 31.3 0.1 2.5e-07 30.0 0.1 1.8 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|147919321|ref|YP_686943.1| - 1.3e-05 24.6 1.6 1.3e-05 24.6 1.1 2.9 3 0 0 3 3 3 1 KOW motif S4_2 PF13275.1 gi|147919321|ref|YP_686943.1| - 0.015 14.8 0.1 0.036 13.6 0.1 1.6 1 0 0 1 1 1 0 S4 domain KOW PF00467.24 gi|147919322|ref|YP_686942.1| - 0.00013 21.5 7.2 0.00014 21.4 4.1 1.8 2 0 0 2 2 2 1 KOW motif LSM14 PF12701.2 gi|147919322|ref|YP_686942.1| - 0.057 13.2 0.0 0.084 12.6 0.0 1.3 1 0 0 1 1 1 0 Scd6-like Sm domain Ribosomal_L14 PF00238.14 gi|147919323|ref|YP_686941.1| - 2.6e-38 130.5 0.4 2.9e-38 130.3 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|147919324|ref|YP_686940.1| - 1.6e-27 95.3 2.1 2e-27 95.0 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 DUF2535 PF10751.4 gi|147919324|ref|YP_686940.1| - 0.00068 19.7 0.0 0.0013 18.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2535) UPF0086 PF01868.11 gi|147919325|ref|YP_686939.1| - 2.3e-24 84.8 0.0 2.9e-24 84.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 SUI1 PF01253.17 gi|147919326|ref|YP_686938.1| - 2.8e-24 84.6 1.6 3.3e-24 84.5 1.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 UPF0137 PF03677.8 gi|147919326|ref|YP_686938.1| - 0.062 12.8 0.2 0.065 12.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0137) S-AdoMet_synt_N PF00438.15 gi|147919326|ref|YP_686938.1| - 0.063 13.5 0.7 0.2 11.8 0.5 2.1 1 1 0 1 1 1 0 S-adenosylmethionine synthetase, N-terminal domain Img2 PF05046.9 gi|147919326|ref|YP_686938.1| - 0.13 12.4 0.2 0.17 12.1 0.1 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|147919326|ref|YP_686938.1| - 0.18 10.9 1.0 0.25 10.5 0.7 1.2 1 0 0 1 1 1 0 DTW domain Ribosomal_L29 PF00831.18 gi|147919327|ref|YP_686937.1| - 1.3e-20 72.8 1.3 1.6e-20 72.5 0.9 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein cwf21 PF08312.7 gi|147919327|ref|YP_686937.1| - 0.051 13.4 0.3 0.1 12.4 0.2 1.5 1 0 0 1 1 1 0 cwf21 domain Fer4_14 PF13394.1 gi|147919327|ref|YP_686937.1| - 0.06 13.3 0.0 0.069 13.1 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF1858 PF08984.6 gi|147919327|ref|YP_686937.1| - 0.063 12.9 0.3 0.14 11.8 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1858) Ribosomal_S3_C PF00189.15 gi|147919328|ref|YP_686936.1| - 1.6e-18 66.6 0.8 3.3e-18 65.6 0.6 1.6 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|147919328|ref|YP_686936.1| - 6.5e-15 54.4 0.1 1.3e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|147919328|ref|YP_686936.1| - 0.0026 17.3 0.4 0.078 12.6 0.1 2.6 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|147919328|ref|YP_686936.1| - 0.1 12.2 0.3 0.26 10.9 0.2 1.7 1 0 0 1 1 1 0 KH domain HOASN PF14515.1 gi|147919328|ref|YP_686936.1| - 0.26 11.6 1.6 0.56 10.6 1.1 1.5 1 0 0 1 1 1 0 Haem-oxygenase-associated N-terminal helices MSP1_C PF07462.6 gi|147919328|ref|YP_686936.1| - 1.5 7.1 4.0 1.8 6.8 2.8 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Ribosomal_L22 PF00237.14 gi|147919329|ref|YP_686935.1| - 3.4e-32 110.4 0.4 4e-32 110.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|147919330|ref|YP_686934.1| - 2.4e-25 87.9 0.5 3.7e-25 87.3 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|147919331|ref|YP_686933.1| - 3.5e-46 156.2 1.0 4.9e-46 155.7 0.7 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|147919331|ref|YP_686933.1| - 1.7e-15 56.7 0.0 6.3e-15 54.9 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|147919332|ref|YP_686932.1| - 6e-20 70.9 3.0 1e-19 70.2 2.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 DUF2294 PF10057.4 gi|147919332|ref|YP_686932.1| - 0.0039 16.8 0.1 0.0041 16.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2294) Lumazine_bd PF12870.2 gi|147919332|ref|YP_686932.1| - 0.015 15.3 0.4 0.017 15.1 0.3 1.1 1 0 0 1 1 1 0 Lumazine-binding domain WhiA_N PF10298.4 gi|147919332|ref|YP_686932.1| - 0.063 13.1 0.2 0.071 12.9 0.1 1.1 1 0 0 1 1 1 0 WhiA N-terminal LAGLIDADG-like domain TusA PF01206.12 gi|147919332|ref|YP_686932.1| - 0.13 11.8 0.1 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L4 PF00573.17 gi|147919333|ref|YP_686931.1| - 1.8e-44 151.4 0.7 2.1e-44 151.1 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|147919334|ref|YP_686930.1| - 3.6e-73 246.1 1.2 4.3e-73 245.9 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 TPR_11 PF13414.1 gi|147919338|ref|YP_686926.1| - 8.4e-45 150.2 21.7 7.3e-16 57.5 0.4 5.2 1 1 2 5 5 5 5 TPR repeat TPR_2 PF07719.12 gi|147919338|ref|YP_686926.1| - 4.4e-36 119.8 17.3 1.1e-07 31.2 2.1 8.1 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919338|ref|YP_686926.1| - 1.4e-33 114.8 24.2 2e-11 44.2 1.0 5.2 2 2 2 5 5 5 5 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919338|ref|YP_686926.1| - 4.7e-33 113.3 16.2 5.2e-10 39.5 0.6 5.3 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919338|ref|YP_686926.1| - 1.1e-31 106.3 0.6 0.00012 22.0 0.0 7.2 6 1 1 7 7 7 5 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919338|ref|YP_686926.1| - 2.3e-28 96.0 11.0 0.00028 21.2 0.0 8.0 1 1 7 8 8 8 7 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919338|ref|YP_686926.1| - 1.1e-26 91.2 7.4 3.6e-06 26.3 1.4 7.0 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919338|ref|YP_686926.1| - 5.1e-24 82.2 14.1 4.9e-05 22.8 0.0 7.1 6 1 2 8 8 7 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919338|ref|YP_686926.1| - 2.1e-20 72.4 3.8 2.9e-07 30.3 0.0 5.2 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147919338|ref|YP_686926.1| - 9.6e-16 57.6 2.8 0.001 19.1 0.0 5.2 2 1 4 6 6 6 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919338|ref|YP_686926.1| - 6e-13 48.7 0.5 9.3e-06 25.6 0.2 4.0 1 1 4 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|147919338|ref|YP_686926.1| - 1.9e-12 46.7 10.6 0.39 11.2 0.2 7.7 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147919338|ref|YP_686926.1| - 4.3e-11 42.5 10.3 0.0006 19.6 0.6 4.7 3 2 2 5 5 5 5 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919338|ref|YP_686926.1| - 6.9e-10 37.9 8.7 0.021 14.6 0.0 6.3 6 2 1 7 7 7 3 Tetratricopeptide repeat BTAD PF03704.12 gi|147919338|ref|YP_686926.1| - 1.4e-09 38.4 10.0 0.0042 17.4 0.0 3.6 2 1 1 3 3 3 3 Bacterial transcriptional activator domain TPR_21 PF09976.4 gi|147919338|ref|YP_686926.1| - 6.7e-07 29.3 6.1 0.0011 18.9 0.0 4.0 3 2 1 4 4 4 1 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|147919338|ref|YP_686926.1| - 4.2e-06 25.8 0.0 0.17 11.1 0.5 4.5 4 0 0 4 4 4 1 SHNi-TPR TPR_15 PF13429.1 gi|147919338|ref|YP_686926.1| - 4.7e-06 25.8 6.0 0.011 14.7 0.0 3.2 1 1 2 3 3 3 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|147919338|ref|YP_686926.1| - 0.00046 19.0 3.1 0.49 9.0 0.0 2.7 2 1 1 3 3 3 2 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|147919338|ref|YP_686926.1| - 0.00059 19.6 2.7 0.057 13.3 0.2 3.4 2 1 1 3 3 3 1 Fis1 C-terminal tetratricopeptide repeat Alkyl_sulf_dimr PF14863.1 gi|147919338|ref|YP_686926.1| - 0.001 19.2 2.6 0.056 13.6 0.5 2.8 1 1 2 3 3 3 1 Alkyl sulfatase dimerisation Coatomer_E PF04733.9 gi|147919338|ref|YP_686926.1| - 0.0021 17.3 0.2 0.71 9.0 0.2 2.5 2 1 0 2 2 2 1 Coatomer epsilon subunit TPR_4 PF07721.9 gi|147919338|ref|YP_686926.1| - 0.0029 17.8 5.1 3.5 8.3 0.2 5.4 5 0 0 5 5 5 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|147919338|ref|YP_686926.1| - 0.0085 15.9 4.1 1.3 8.8 0.7 4.5 3 2 0 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_3 PF07720.7 gi|147919338|ref|YP_686926.1| - 0.02 14.6 4.0 2.6 7.9 0.3 4.6 4 1 1 5 5 5 0 Tetratricopeptide repeat MIT PF04212.13 gi|147919338|ref|YP_686926.1| - 0.031 14.1 8.9 27 4.7 0.1 5.7 4 1 3 7 7 7 0 MIT (microtubule interacting and transport) domain Prefoldin_2 PF01920.15 gi|147919338|ref|YP_686926.1| - 0.045 13.5 0.1 1.4 8.7 0.0 2.9 2 1 1 3 3 3 0 Prefoldin subunit Glyco_hyd_65N_2 PF14498.1 gi|147919338|ref|YP_686926.1| - 0.057 13.0 0.5 0.93 9.1 0.0 2.4 2 1 1 3 3 3 0 Glycosyl hydrolase family 65, N-terminal domain TPR_10 PF13374.1 gi|147919338|ref|YP_686926.1| - 0.35 10.8 7.6 22 5.1 0.3 5.0 5 0 0 5 5 5 0 Tetratricopeptide repeat HhH-GPD PF00730.20 gi|147919339|ref|YP_686925.1| - 6.3e-12 45.7 0.0 8.6e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|147919339|ref|YP_686925.1| - 6e-07 28.8 0.2 4.6e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|147919339|ref|YP_686925.1| - 2.9e-05 24.0 1.7 5.8e-05 23.1 1.2 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.2 gi|147919339|ref|YP_686925.1| - 0.032 14.1 0.0 8.9 6.2 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|147919339|ref|YP_686925.1| - 0.032 14.3 0.1 0.17 12.1 0.1 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain HHH_8 PF14716.1 gi|147919339|ref|YP_686925.1| - 0.058 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain EAP30 PF04157.11 gi|147919339|ref|YP_686925.1| - 0.078 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family DUF1215 PF06744.7 gi|147919339|ref|YP_686925.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1215) TPR_6 PF13174.1 gi|147919339|ref|YP_686925.1| - 0.12 12.8 0.1 0.38 11.3 0.0 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat AIPR PF10592.4 gi|147919340|ref|YP_686924.1| - 5.8e-83 278.6 8.8 8.9e-83 278.0 6.1 1.3 1 0 0 1 1 1 1 AIPR protein DUF1374 PF07118.6 gi|147919340|ref|YP_686924.1| - 0.4 10.8 7.8 0.1 12.7 2.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1374) DUF4420 PF14390.1 gi|147919341|ref|YP_686923.1| - 1.5e-69 234.1 0.2 1.7e-69 234.0 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4420) UBN2_3 PF14244.1 gi|147919341|ref|YP_686923.1| - 0.11 12.0 0.2 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type Z1 PF10593.4 gi|147919342|ref|YP_686922.1| - 4.1e-81 271.7 1.0 8.4e-81 270.6 0.1 2.0 2 0 0 2 2 2 1 Z1 domain HATPase_c_3 PF13589.1 gi|147919343|ref|YP_686921.1| - 2.3e-33 114.7 0.0 5.4e-33 113.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|147919343|ref|YP_686921.1| - 2.7e-08 33.5 0.0 7.1e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_methylase PF00145.12 gi|147919344|ref|YP_686920.1| - 1.5e-58 198.5 0.7 1.3e-50 172.4 0.1 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|147919344|ref|YP_686920.1| - 0.012 15.2 0.1 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AAA_12 PF13087.1 gi|147919346|ref|YP_686918.1| - 7e-33 113.6 0.1 2.6e-32 111.8 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|147919346|ref|YP_686918.1| - 2e-29 102.8 7.0 3.8e-28 98.6 3.2 2.6 2 1 0 2 2 1 1 AAA domain PLDc_2 PF13091.1 gi|147919346|ref|YP_686918.1| - 5.8e-14 51.9 2.2 3.4e-13 49.4 0.1 3.0 3 0 0 3 3 3 1 PLD-like domain AAA_30 PF13604.1 gi|147919346|ref|YP_686918.1| - 2.7e-09 36.8 0.0 1.3e-05 24.8 0.0 3.0 3 0 0 3 3 2 2 AAA domain TPR_11 PF13414.1 gi|147919346|ref|YP_686918.1| - 2.8e-09 36.5 0.2 7.3e-09 35.1 0.1 1.8 1 0 0 1 1 1 1 TPR repeat AAA_19 PF13245.1 gi|147919346|ref|YP_686918.1| - 8.5e-09 35.0 0.0 3.2e-08 33.2 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain TPR_2 PF07719.12 gi|147919346|ref|YP_686918.1| - 9.2e-09 34.5 0.3 0.0065 16.2 0.4 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat UvrD_C_2 PF13538.1 gi|147919346|ref|YP_686918.1| - 8.7e-08 32.2 0.0 3.7e-07 30.2 0.0 2.1 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.10 gi|147919346|ref|YP_686918.1| - 1.1e-05 25.3 3.2 0.00012 21.9 0.6 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|147919346|ref|YP_686918.1| - 1.2e-05 24.7 1.6 1.2e-05 24.7 1.1 1.8 2 0 0 2 2 2 1 UvrD/REP helicase N-terminal domain TPR_14 PF13428.1 gi|147919346|ref|YP_686918.1| - 1.3e-05 25.4 0.3 0.49 11.1 0.0 3.6 2 1 1 3 3 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919346|ref|YP_686918.1| - 2.9e-05 24.6 0.0 8.1e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat Viral_helicase1 PF01443.13 gi|147919346|ref|YP_686918.1| - 3.1e-05 23.6 0.1 0.15 11.5 0.0 3.7 3 1 0 3 3 3 1 Viral (Superfamily 1) RNA helicase Arch_ATPase PF01637.13 gi|147919346|ref|YP_686918.1| - 6.3e-05 22.7 2.5 0.0003 20.5 0.1 2.6 1 1 1 2 2 2 1 Archaeal ATPase TPR_19 PF14559.1 gi|147919346|ref|YP_686918.1| - 7.1e-05 23.0 0.5 0.00076 19.7 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat PhoH PF02562.11 gi|147919346|ref|YP_686918.1| - 8.4e-05 21.8 0.0 0.048 12.8 0.0 3.4 3 0 0 3 3 3 1 PhoH-like protein PIF1 PF05970.9 gi|147919346|ref|YP_686918.1| - 0.00012 21.2 0.0 0.13 11.1 0.0 2.9 3 0 0 3 3 3 2 PIF1-like helicase UvrD_C PF13361.1 gi|147919346|ref|YP_686918.1| - 0.00051 19.6 0.8 0.0028 17.2 0.0 2.3 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain TPR_17 PF13431.1 gi|147919346|ref|YP_686918.1| - 0.0019 18.2 0.2 3 8.2 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat AAA_16 PF13191.1 gi|147919346|ref|YP_686918.1| - 0.002 18.1 0.0 0.028 14.3 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|147919346|ref|YP_686918.1| - 0.0025 17.9 0.6 0.076 13.1 0.0 3.3 3 1 0 3 3 3 1 AAA domain Helicase_RecD PF05127.9 gi|147919346|ref|YP_686918.1| - 0.0041 16.7 0.0 0.73 9.4 0.0 2.8 2 0 0 2 2 2 1 Helicase TPR_1 PF00515.23 gi|147919346|ref|YP_686918.1| - 0.0049 16.4 0.7 1.3 8.8 0.5 3.0 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919346|ref|YP_686918.1| - 0.0057 16.5 0.1 0.016 15.0 0.1 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat DEAD PF00270.24 gi|147919346|ref|YP_686918.1| - 0.006 16.1 0.3 0.024 14.1 0.0 2.3 3 0 0 3 3 1 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|147919346|ref|YP_686918.1| - 0.0084 15.1 0.1 0.24 10.3 0.0 2.8 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) AAA PF00004.24 gi|147919346|ref|YP_686918.1| - 0.0099 16.0 0.9 0.026 14.7 0.1 2.2 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Fis1_TPR_C PF14853.1 gi|147919346|ref|YP_686918.1| - 0.011 15.5 0.3 3.5 7.5 0.0 3.7 2 1 1 3 3 3 0 Fis1 C-terminal tetratricopeptide repeat T2SE PF00437.15 gi|147919346|ref|YP_686918.1| - 0.013 14.3 0.0 0.04 12.8 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Apc5 PF12862.2 gi|147919346|ref|YP_686918.1| - 0.038 13.8 0.0 0.16 11.8 0.0 2.0 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 AAA_5 PF07728.9 gi|147919346|ref|YP_686918.1| - 0.04 13.6 0.0 0.3 10.8 0.0 2.5 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) CENP-Q PF13094.1 gi|147919346|ref|YP_686918.1| - 0.075 13.0 3.6 0.19 11.7 2.5 1.6 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit SRP54 PF00448.17 gi|147919346|ref|YP_686918.1| - 0.084 12.3 1.5 0.39 10.1 0.0 2.7 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain TPR_8 PF13181.1 gi|147919346|ref|YP_686918.1| - 0.099 12.4 0.6 7.5 6.5 0.0 3.0 1 1 1 2 2 2 0 Tetratricopeptide repeat SPDY PF03771.11 gi|147919346|ref|YP_686918.1| - 0.19 11.2 0.0 0.37 10.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF317) AhpC-TSA PF00578.16 gi|147919347|ref|YP_686917.1| - 3.5e-20 71.9 0.0 4.4e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147919347|ref|YP_686917.1| - 1.4e-07 31.2 0.0 1.9e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin NTP_transf_2 PF01909.18 gi|147919348|ref|YP_686916.1| - 2.9e-13 49.9 0.8 3.6e-13 49.6 0.5 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.9 gi|147919349|ref|YP_686915.1| - 6.4e-12 45.4 0.2 8e-12 45.0 0.1 1.1 1 0 0 1 1 1 1 HEPN domain TPR_11 PF13414.1 gi|147919350|ref|YP_686914.1| - 7.1e-22 76.8 0.1 8e-12 44.6 0.0 2.1 1 1 1 2 2 2 2 TPR repeat TPR_2 PF07719.12 gi|147919350|ref|YP_686914.1| - 4.6e-13 47.9 0.0 3.1e-06 26.6 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919350|ref|YP_686914.1| - 1.2e-12 46.8 0.0 1.1e-06 27.9 0.0 3.0 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919350|ref|YP_686914.1| - 2.1e-12 46.1 0.0 8.3e-05 22.4 0.0 2.2 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919350|ref|YP_686914.1| - 1.5e-10 40.7 0.2 0.00051 20.4 0.0 2.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919350|ref|YP_686914.1| - 6.2e-10 39.2 0.1 4e-06 27.0 0.0 2.1 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919350|ref|YP_686914.1| - 1.3e-09 37.1 0.0 0.001 18.7 0.0 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919350|ref|YP_686914.1| - 4.4e-09 36.7 0.0 1e-08 35.6 0.0 1.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919350|ref|YP_686914.1| - 3.5e-08 33.2 0.3 0.00054 19.8 0.0 2.4 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147919350|ref|YP_686914.1| - 2.7e-07 30.5 0.1 0.11 12.9 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147919350|ref|YP_686914.1| - 0.0029 17.4 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919350|ref|YP_686914.1| - 0.0051 16.5 0.0 3.2 7.7 0.0 2.8 2 1 1 3 3 3 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919350|ref|YP_686914.1| - 0.0056 16.7 0.0 0.008 16.2 0.0 1.3 1 0 0 1 1 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.1 gi|147919350|ref|YP_686914.1| - 0.014 15.5 0.1 0.13 12.4 0.0 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat DUF3856 PF12968.2 gi|147919350|ref|YP_686914.1| - 0.031 14.0 0.6 4 7.2 0.1 2.8 2 1 1 3 3 3 0 Domain of Unknown Function (DUF3856) NARP1 PF12569.3 gi|147919350|ref|YP_686914.1| - 0.063 12.0 0.0 0.069 11.8 0.0 1.0 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 TOM20_plant PF06552.7 gi|147919350|ref|YP_686914.1| - 0.091 12.3 0.0 0.25 10.9 0.0 1.7 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 TPR_11 PF13414.1 gi|147919351|ref|YP_686913.1| - 3.6e-15 55.3 1.0 1e-10 41.0 0.0 2.2 1 1 0 2 2 2 2 TPR repeat TPR_17 PF13431.1 gi|147919351|ref|YP_686913.1| - 1.3e-14 53.0 0.3 9.8e-05 22.2 0.0 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919351|ref|YP_686913.1| - 8.1e-10 38.4 0.6 9.8e-08 31.9 0.1 2.8 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919351|ref|YP_686913.1| - 8.6e-10 38.8 0.4 4.4e-05 23.7 0.1 2.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919351|ref|YP_686913.1| - 6.9e-09 34.9 0.2 3e-05 23.4 0.0 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147919351|ref|YP_686913.1| - 1.1e-08 34.2 1.1 6e-07 28.8 0.0 3.2 3 1 0 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919351|ref|YP_686913.1| - 2.5e-08 34.3 1.2 4.5e-05 23.9 0.0 2.4 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919351|ref|YP_686913.1| - 3.6e-08 32.6 0.2 7.3e-06 25.3 0.0 3.4 2 2 2 4 4 4 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919351|ref|YP_686913.1| - 3e-06 27.0 2.0 0.0034 17.3 0.3 2.6 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919351|ref|YP_686913.1| - 0.00016 21.1 0.9 0.025 14.3 0.0 3.2 3 1 0 4 4 4 1 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147919351|ref|YP_686913.1| - 0.0002 21.3 0.5 0.0087 16.1 0.0 2.1 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147919351|ref|YP_686913.1| - 0.0019 18.5 0.6 0.036 14.5 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat DUF3856 PF12968.2 gi|147919351|ref|YP_686913.1| - 0.013 15.3 0.2 0.016 15.0 0.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF3856) BTAD PF03704.12 gi|147919351|ref|YP_686913.1| - 0.021 15.1 0.7 0.028 14.7 0.5 1.3 1 0 0 1 1 1 0 Bacterial transcriptional activator domain TPR_10 PF13374.1 gi|147919351|ref|YP_686913.1| - 0.025 14.5 1.8 0.15 12.0 0.4 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_4 PF07721.9 gi|147919351|ref|YP_686913.1| - 0.061 13.7 1.6 0.091 13.2 0.1 2.2 2 0 0 2 2 1 0 Tetratricopeptide repeat TPR_15 PF13429.1 gi|147919351|ref|YP_686913.1| - 0.068 12.2 0.1 0.1 11.6 0.1 1.4 1 1 0 1 1 1 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919351|ref|YP_686913.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 1 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 DDE_Tnp_1 PF01609.16 gi|147919352|ref|YP_686066.1| - 1.5e-16 60.6 0.1 2.3e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147919352|ref|YP_686066.1| - 6.6e-13 48.3 0.1 1.9e-12 46.8 0.1 1.8 1 1 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147919352|ref|YP_686066.1| - 3.6e-05 23.5 0.0 7.1e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147919352|ref|YP_686066.1| - 0.021 14.8 0.5 0.041 13.8 0.3 1.5 1 0 0 1 1 1 0 Transposase DDE domain UPF0150 PF03681.10 gi|147919353|ref|YP_686911.1| - 1.3e-15 56.6 0.2 1.5e-15 56.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) DUF1902 PF08972.6 gi|147919353|ref|YP_686911.1| - 0.013 15.0 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) UDG PF03167.14 gi|147919354|ref|YP_686910.1| - 3.9e-08 32.9 0.0 4.7e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF823 PF05689.6 gi|147919354|ref|YP_686910.1| - 0.096 12.0 0.1 0.13 11.5 0.1 1.1 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF823) UPF0150 PF03681.10 gi|147919355|ref|YP_686909.1| - 0.0015 18.1 0.0 0.0033 17.0 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0150) ATP_bind_3 PF01171.15 gi|147919355|ref|YP_686909.1| - 0.034 13.6 0.1 0.045 13.2 0.0 1.2 1 0 0 1 1 1 0 PP-loop family AhpC-TSA PF00578.16 gi|147919357|ref|YP_686907.1| - 3.2e-35 120.5 0.0 4.1e-35 120.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147919357|ref|YP_686907.1| - 2.4e-16 59.5 0.0 3.2e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|147919357|ref|YP_686907.1| - 0.018 14.6 0.3 0.037 13.6 0.2 1.6 1 0 0 1 1 1 0 C-terminal domain of 1-Cys peroxiredoxin NTP_transf_2 PF01909.18 gi|147919358|ref|YP_686906.1| - 1.5e-09 38.0 0.2 3e-09 37.0 0.1 1.6 2 0 0 2 2 2 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|147919358|ref|YP_686906.1| - 7.1e-06 25.6 0.0 1.5e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF294 PF03445.8 gi|147919358|ref|YP_686906.1| - 0.00034 20.2 0.0 0.0005 19.6 0.0 1.2 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HTH_24 PF13412.1 gi|147919358|ref|YP_686906.1| - 0.00084 18.6 0.0 0.0016 17.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|147919358|ref|YP_686906.1| - 0.0013 18.2 0.0 0.0029 17.1 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|147919358|ref|YP_686906.1| - 0.0071 16.0 0.1 0.019 14.6 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|147919358|ref|YP_686906.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|147919358|ref|YP_686906.1| - 0.059 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.11 gi|147919358|ref|YP_686906.1| - 0.065 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.1 gi|147919358|ref|YP_686906.1| - 0.072 13.4 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|147919358|ref|YP_686906.1| - 0.081 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|147919358|ref|YP_686906.1| - 0.084 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|147919358|ref|YP_686906.1| - 0.31 10.5 2.4 7.7 6.1 0.0 2.5 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain HEPN PF05168.9 gi|147919359|ref|YP_686905.1| - 5e-05 23.1 0.9 6.5e-05 22.8 0.6 1.3 1 1 0 1 1 1 1 HEPN domain Latexin PF06907.7 gi|147919359|ref|YP_686905.1| - 0.12 11.4 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Latexin RNase_H PF00075.19 gi|147919360|ref|YP_686904.1| - 5.2e-13 49.4 0.0 8.8e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|147919360|ref|YP_686904.1| - 2.6e-08 33.5 0.1 6.5e-08 32.2 0.1 1.6 1 1 0 1 1 1 1 Reverse transcriptase-like bZIP_2 PF07716.10 gi|147919360|ref|YP_686904.1| - 0.0098 15.6 1.5 0.027 14.3 1.0 1.7 1 0 0 1 1 1 1 Basic region leucine zipper bZIP_1 PF00170.16 gi|147919360|ref|YP_686904.1| - 0.022 14.6 0.9 0.022 14.6 0.6 2.0 2 0 0 2 2 2 0 bZIP transcription factor Phlebovirus_NSM PF07246.6 gi|147919360|ref|YP_686904.1| - 0.13 11.3 1.0 0.15 11.1 0.7 1.1 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Response_reg PF00072.19 gi|147919362|ref|YP_686902.1| - 4.6e-20 71.6 0.2 5.2e-20 71.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Arena_nucleocap PF00843.12 gi|147919362|ref|YP_686902.1| - 0.045 11.6 0.0 0.045 11.6 0.0 1.1 1 0 0 1 1 1 0 Arenavirus nucleocapsid protein YcgR PF07317.7 gi|147919362|ref|YP_686902.1| - 0.072 12.8 0.0 2.7 7.7 0.0 2.0 1 1 1 2 2 2 0 Flagellar regulator YcgR Response_reg PF00072.19 gi|147919363|ref|YP_686901.1| - 2.9e-18 65.8 0.1 3.2e-18 65.7 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain ETRAMP PF09716.5 gi|147919365|ref|YP_686899.1| - 0.073 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Big_3_4 PF13754.1 gi|147919366|ref|YP_686898.1| - 0.00016 21.9 0.4 0.051 13.9 0.0 4.1 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 3) CARDB PF07705.6 gi|147919366|ref|YP_686898.1| - 0.002 18.1 0.0 0.33 11.0 0.0 3.4 3 1 0 3 3 3 1 CARDB Y_Y_Y PF07495.8 gi|147919366|ref|YP_686898.1| - 0.034 13.8 0.3 37 4.1 0.0 4.1 3 1 0 3 3 3 0 Y_Y_Y domain DnaJ PF00226.26 gi|147919367|ref|YP_686897.1| - 0.00049 19.7 0.0 0.00095 18.8 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain ERp29 PF07749.7 gi|147919367|ref|YP_686897.1| - 0.079 13.5 0.2 0.45 11.1 0.0 2.1 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain Exo_endo_phos PF03372.18 gi|147919368|ref|YP_686896.1| - 3.3e-12 46.8 0.0 4.5e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|147919368|ref|YP_686896.1| - 4.3e-06 26.3 0.0 6.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase T2SE PF00437.15 gi|147919368|ref|YP_686896.1| - 0.0085 15.0 0.0 0.012 14.5 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein CarboxypepD_reg PF13620.1 gi|147919369|ref|YP_686895.1| - 2.7e-14 52.9 0.3 4.1e-14 52.3 0.2 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|147919369|ref|YP_686895.1| - 2.3e-08 33.6 0.3 3.6e-08 33.0 0.2 1.4 1 0 0 1 1 1 1 Cna protein B-type domain DUF4480 PF13715.1 gi|147919369|ref|YP_686895.1| - 3.6e-05 23.7 0.0 5.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) fn3_3 PF14686.1 gi|147919369|ref|YP_686895.1| - 0.0051 16.8 0.0 0.0071 16.4 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II DUF4249 PF14054.1 gi|147919369|ref|YP_686895.1| - 0.016 14.5 0.1 0.021 14.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) Dioxygenase_C PF00775.16 gi|147919369|ref|YP_686895.1| - 0.018 14.2 0.1 0.42 9.8 0.1 2.0 1 1 0 1 1 1 0 Dioxygenase MG1 PF11974.3 gi|147919369|ref|YP_686895.1| - 0.041 14.4 0.0 0.048 14.2 0.0 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain GATase_4 PF13230.1 gi|147919370|ref|YP_686894.1| - 2.9e-39 134.4 0.1 2.3e-37 128.1 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|147919370|ref|YP_686894.1| - 4e-09 36.5 0.4 1e-08 35.2 0.3 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|147919370|ref|YP_686894.1| - 5.9e-06 25.2 0.1 8.1e-06 24.7 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Cbl_N3 PF02762.9 gi|147919370|ref|YP_686894.1| - 0.049 13.2 0.0 0.87 9.2 0.0 2.2 2 0 0 2 2 2 0 CBL proto-oncogene N-terminus, SH2-like domain Methyltransf_25 PF13649.1 gi|147919371|ref|YP_686893.1| - 2.9e-10 40.4 0.0 5.7e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919371|ref|YP_686893.1| - 2.8e-09 36.7 0.0 3.5e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919371|ref|YP_686893.1| - 9.4e-09 35.8 0.0 1.4e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147919371|ref|YP_686893.1| - 8.4e-07 29.4 0.0 1.5e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147919371|ref|YP_686893.1| - 2.3e-06 27.9 0.0 4.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147919371|ref|YP_686893.1| - 1.3e-05 24.9 0.0 1.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147919371|ref|YP_686893.1| - 5e-05 23.3 0.0 6.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|147919371|ref|YP_686893.1| - 0.012 14.6 0.0 0.018 14.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Ubie_methyltran PF01209.13 gi|147919371|ref|YP_686893.1| - 0.012 14.6 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|147919371|ref|YP_686893.1| - 0.03 13.7 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW AAL_decarboxy PF03306.8 gi|147919373|ref|YP_686891.1| - 2.8e-83 278.3 0.1 3.4e-83 278.0 0.0 1.0 1 0 0 1 1 1 1 Alpha-acetolactate decarboxylase Methyltransf_11 PF08241.7 gi|147919374|ref|YP_686890.1| - 6.2e-19 68.2 0.0 1.1e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919374|ref|YP_686890.1| - 6.9e-14 51.6 0.0 1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147919374|ref|YP_686890.1| - 1.3e-13 51.1 0.1 3.2e-13 49.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147919374|ref|YP_686890.1| - 3.1e-13 49.3 0.0 5.8e-13 48.5 0.0 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|147919374|ref|YP_686890.1| - 1.4e-12 47.6 0.0 2.3e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919374|ref|YP_686890.1| - 1e-11 45.4 0.0 2.2e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147919374|ref|YP_686890.1| - 1.8e-10 41.1 0.0 3.3e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147919374|ref|YP_686890.1| - 4.3e-10 39.6 0.2 1.1e-09 38.3 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|147919374|ref|YP_686890.1| - 0.00013 21.6 0.0 0.0024 17.5 0.0 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.9 gi|147919374|ref|YP_686890.1| - 0.00038 19.8 0.0 0.00074 18.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain NodS PF05401.6 gi|147919374|ref|YP_686890.1| - 0.00049 19.5 0.0 0.00075 18.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|147919374|ref|YP_686890.1| - 0.00072 18.9 0.0 0.0011 18.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|147919374|ref|YP_686890.1| - 0.0033 16.5 0.0 0.0042 16.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|147919374|ref|YP_686890.1| - 0.0078 17.0 0.0 0.021 15.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|147919374|ref|YP_686890.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.14 gi|147919374|ref|YP_686890.1| - 0.014 14.9 0.0 0.12 11.9 0.0 2.0 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|147919374|ref|YP_686890.1| - 0.028 14.0 0.0 0.064 12.8 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|147919374|ref|YP_686890.1| - 0.034 13.8 0.0 0.056 13.1 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.6 gi|147919374|ref|YP_686890.1| - 0.06 12.0 0.0 0.079 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DICT PF10069.4 gi|147919374|ref|YP_686890.1| - 0.098 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Sensory domain found in DIguanylate Cyclases & Two-component systems PrmA PF06325.8 gi|147919374|ref|YP_686890.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) dCMP_cyt_deam_1 PF00383.17 gi|147919375|ref|YP_686889.1| - 6.3e-22 77.1 0.0 8.5e-22 76.7 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|147919375|ref|YP_686889.1| - 0.0021 17.8 0.2 0.0039 17.0 0.1 1.5 1 1 0 1 1 1 1 Bd3614-like deaminase MafB19-deam PF14437.1 gi|147919375|ref|YP_686889.1| - 0.026 14.1 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 MafB19-like deaminase XOO_2897-deam PF14440.1 gi|147919375|ref|YP_686889.1| - 0.097 12.3 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase Exo_endo_phos PF03372.18 gi|147919376|ref|YP_686888.1| - 1.1e-11 45.1 0.0 1.4e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|147919376|ref|YP_686888.1| - 0.0026 17.3 0.0 0.0061 16.1 0.0 1.7 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Peripla_BP_2 PF01497.13 gi|147919376|ref|YP_686888.1| - 0.16 11.1 0.0 0.37 9.8 0.0 1.6 2 0 0 2 2 2 0 Periplasmic binding protein PrsW-protease PF13367.1 gi|147919378|ref|YP_686885.1| - 4.6e-19 68.3 11.6 4.6e-19 68.3 8.0 2.1 3 1 0 3 3 3 1 Protease prsW family MTH865 PF07747.6 gi|147919380|ref|YP_686883.1| - 3.7e-13 48.8 0.0 4.5e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 MTH865-like family TPR_11 PF13414.1 gi|147919381|ref|YP_686880.1| - 1.1e-24 85.8 15.4 2.7e-09 36.5 1.4 3.8 1 1 3 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|147919381|ref|YP_686880.1| - 2.2e-20 70.8 6.3 1.6e-05 24.4 0.0 5.4 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919381|ref|YP_686880.1| - 7.8e-18 63.1 0.8 0.00086 19.3 0.0 4.5 4 0 0 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919381|ref|YP_686880.1| - 1.6e-14 54.0 0.9 0.00034 21.1 0.0 4.7 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919381|ref|YP_686880.1| - 1.7e-14 52.9 0.1 0.00056 20.3 0.0 4.9 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147919381|ref|YP_686880.1| - 2.6e-14 52.0 7.3 8.6e-05 21.9 0.0 5.5 4 1 1 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919381|ref|YP_686880.1| - 2.1e-12 47.1 1.8 0.0012 19.1 0.0 4.3 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919381|ref|YP_686880.1| - 2.1e-10 39.6 1.5 0.016 14.9 0.0 4.9 4 1 0 4 4 4 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919381|ref|YP_686880.1| - 1.6e-07 31.1 3.5 0.00058 19.7 0.2 3.5 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147919381|ref|YP_686880.1| - 1.9e-06 27.8 0.0 0.023 14.7 0.0 3.7 2 1 2 4 4 4 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|147919381|ref|YP_686880.1| - 2.1e-06 27.4 0.0 0.094 12.2 0.0 3.5 1 1 2 3 3 3 2 Plant specific mitochondrial import receptor subunit TOM20 Apc3 PF12895.2 gi|147919381|ref|YP_686880.1| - 0.0011 19.0 2.6 0.0033 17.5 0.8 2.4 1 1 2 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 DUF4274 PF14096.1 gi|147919381|ref|YP_686880.1| - 0.056 13.2 0.0 0.22 11.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4274) Fis1_TPR_C PF14853.1 gi|147919381|ref|YP_686880.1| - 0.28 11.0 2.1 1.6 8.6 0.6 2.8 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat DDE_Tnp_1 PF01609.16 gi|147919382|ref|YP_686879.1| - 1.7e-11 44.0 0.1 3.5e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain TPR_16 PF13432.1 gi|147919383|ref|YP_686878.1| - 7.5e-24 83.8 10.1 2.8e-13 50.1 3.1 2.3 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147919383|ref|YP_686878.1| - 1.1e-22 79.4 9.9 2.8e-12 46.0 1.5 2.8 2 1 0 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|147919383|ref|YP_686878.1| - 1.5e-21 75.0 5.2 2.1e-05 23.9 0.0 5.1 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147919383|ref|YP_686878.1| - 4.2e-21 73.1 10.3 6.5e-05 22.5 0.2 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919383|ref|YP_686878.1| - 1.1e-16 59.8 10.4 2.8e-05 24.3 1.6 4.3 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919383|ref|YP_686878.1| - 1.3e-15 55.9 3.9 0.00021 20.8 0.0 4.6 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919383|ref|YP_686878.1| - 2.8e-14 52.0 3.5 0.035 14.3 0.0 4.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919383|ref|YP_686878.1| - 1.4e-12 46.3 9.9 0.0029 17.2 0.0 4.4 4 1 0 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147919383|ref|YP_686878.1| - 1.2e-11 44.2 4.7 0.0019 18.5 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919383|ref|YP_686878.1| - 1.4e-10 41.3 22.0 2.3e-05 24.6 0.4 3.1 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919383|ref|YP_686878.1| - 8.1e-10 38.4 15.3 5.9e-06 26.1 3.6 3.3 1 1 3 4 4 4 4 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919383|ref|YP_686878.1| - 7.3e-08 32.4 3.1 3.3e-06 27.1 0.1 2.3 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|147919383|ref|YP_686878.1| - 6.9e-07 29.0 10.3 0.0014 18.4 2.2 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147919383|ref|YP_686878.1| - 1.8e-06 27.9 6.4 0.012 15.6 0.9 3.1 1 1 0 2 2 2 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|147919383|ref|YP_686878.1| - 1.2e-05 24.5 4.5 1.7e-05 24.0 3.1 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat NARP1 PF12569.3 gi|147919383|ref|YP_686878.1| - 0.00087 18.1 5.5 0.001 17.9 0.3 2.1 1 1 1 2 2 2 1 NMDA receptor-regulated protein 1 DUF3548 PF12068.3 gi|147919383|ref|YP_686878.1| - 0.0011 18.3 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3548) TPR_4 PF07721.9 gi|147919383|ref|YP_686878.1| - 0.0013 18.9 11.6 0.65 10.5 0.1 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|147919383|ref|YP_686878.1| - 0.0023 17.5 0.1 1.2 8.6 0.0 2.7 1 1 1 2 2 2 1 Plant specific mitochondrial import receptor subunit TOM20 BTAD PF03704.12 gi|147919383|ref|YP_686878.1| - 0.0035 17.6 8.1 0.18 12.1 2.0 2.2 1 1 1 2 2 2 2 Bacterial transcriptional activator domain RPN7 PF10602.4 gi|147919383|ref|YP_686878.1| - 0.0049 16.2 2.1 0.037 13.4 0.2 2.8 1 1 2 3 3 3 1 26S proteasome subunit RPN7 TP6A_N PF04406.9 gi|147919383|ref|YP_686878.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Type IIB DNA topoisomerase Apc5 PF12862.2 gi|147919383|ref|YP_686878.1| - 0.043 13.6 1.1 0.38 10.6 0.1 2.5 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 TPR_10 PF13374.1 gi|147919383|ref|YP_686878.1| - 0.055 13.4 11.1 0.25 11.3 0.3 4.5 4 1 1 5 5 4 0 Tetratricopeptide repeat TPR_5 PF12688.2 gi|147919383|ref|YP_686878.1| - 0.058 13.4 3.1 0.47 10.5 0.2 3.1 1 1 0 2 2 2 0 Tetratrico peptide repeat FAT PF02259.18 gi|147919383|ref|YP_686878.1| - 0.072 12.0 0.1 0.89 8.4 0.0 2.0 1 1 0 1 1 1 0 FAT domain TPR_21 PF09976.4 gi|147919383|ref|YP_686878.1| - 0.12 12.2 8.8 0.08 12.8 1.2 2.5 1 1 0 2 2 2 0 Tetratricopeptide repeat TPR_3 PF07720.7 gi|147919383|ref|YP_686878.1| - 0.14 11.9 1.2 1.8 8.4 0.0 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat SHNi-TPR PF10516.4 gi|147919383|ref|YP_686878.1| - 0.16 11.1 2.8 0.41 9.9 0.0 2.9 4 0 0 4 4 3 0 SHNi-TPR MFS_1 PF07690.11 gi|147919384|ref|YP_686877.1| - 6.5e-54 182.9 58.9 1.4e-40 139.0 29.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147919384|ref|YP_686877.1| - 2.2e-14 52.9 34.4 1.1e-13 50.5 9.6 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|147919384|ref|YP_686877.1| - 4.4e-11 41.8 38.8 1.3e-10 40.2 7.9 2.4 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|147919384|ref|YP_686877.1| - 0.0063 16.2 5.9 0.011 15.4 1.6 3.3 3 1 0 3 3 3 1 MFS_1 like family MFS_3 PF05977.8 gi|147919384|ref|YP_686877.1| - 0.22 9.5 26.4 0.45 8.5 5.4 3.1 1 1 2 3 3 3 0 Transmembrane secretion effector OATP PF03137.15 gi|147919384|ref|YP_686877.1| - 1.6 6.6 13.8 0.021 12.8 1.4 2.9 2 1 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Pox_I5 PF04713.7 gi|147919385|ref|YP_686876.1| - 0.00084 19.0 0.4 0.0016 18.1 0.3 1.5 1 0 0 1 1 1 1 Poxvirus protein I5 FeThRed_B PF02943.10 gi|147919387|ref|YP_686874.1| - 1.2e-21 76.4 0.1 2e-21 75.7 0.1 1.3 1 0 0 1 1 1 1 Ferredoxin thioredoxin reductase catalytic beta chain RecR PF02132.10 gi|147919387|ref|YP_686874.1| - 0.015 14.7 0.7 0.032 13.6 0.5 1.5 1 0 0 1 1 1 0 RecR protein Rubredoxin PF00301.15 gi|147919387|ref|YP_686874.1| - 0.23 11.3 12.6 0.69 9.8 6.4 2.8 2 1 0 2 2 2 0 Rubredoxin Cys_rich_CPCC PF14206.1 gi|147919387|ref|YP_686874.1| - 9.9 5.8 13.9 0.13 11.8 2.5 2.3 2 0 0 2 2 2 0 Cysteine-rich CPCC Glutaredoxin PF00462.19 gi|147919388|ref|YP_686873.1| - 1.5e-11 44.1 0.0 2e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|147919388|ref|YP_686873.1| - 7.3e-07 29.3 0.0 9.8e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|147919388|ref|YP_686873.1| - 0.00042 20.2 0.0 0.0005 20.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_3 PF13192.1 gi|147919388|ref|YP_686873.1| - 0.0022 17.7 0.0 0.0037 17.0 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin domain ArsC PF03960.10 gi|147919388|ref|YP_686873.1| - 0.057 13.4 0.0 7.6 6.6 0.0 2.1 2 0 0 2 2 2 0 ArsC family DUF836 PF05768.9 gi|147919388|ref|YP_686873.1| - 0.15 12.3 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Peptidase_M48 PF01435.13 gi|147919390|ref|YP_686871.1| - 9.5e-27 94.0 0.0 1.1e-20 74.1 0.0 2.1 1 1 1 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.6 gi|147919390|ref|YP_686871.1| - 2e-05 23.7 0.0 3.3e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF898 PF05987.8 gi|147919390|ref|YP_686871.1| - 0.0022 16.9 0.9 0.0031 16.4 0.6 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF898) 7tm_7 PF08395.7 gi|147919390|ref|YP_686871.1| - 0.0042 16.1 0.4 0.0059 15.6 0.2 1.1 1 0 0 1 1 1 1 7tm Chemosensory receptor SprT-like PF10263.4 gi|147919390|ref|YP_686871.1| - 0.094 12.3 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 SprT-like family TM2 PF05154.11 gi|147919391|ref|YP_686870.1| - 2.7e-05 24.2 1.8 4.6e-05 23.5 1.3 1.4 1 0 0 1 1 1 1 TM2 domain zf-B_box PF00643.19 gi|147919391|ref|YP_686870.1| - 0.0078 16.0 6.3 0.14 12.0 4.4 2.2 1 1 0 1 1 1 1 B-box zinc finger zf-C3HC4_2 PF13923.1 gi|147919391|ref|YP_686870.1| - 0.13 12.2 6.6 0.73 9.9 0.2 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) IBR PF01485.16 gi|147919391|ref|YP_686870.1| - 1.1 9.2 7.1 15 5.5 5.2 2.1 1 1 1 2 2 2 0 IBR domain FYVE PF01363.16 gi|147919391|ref|YP_686870.1| - 4.8 7.1 7.4 66 3.5 5.1 2.2 1 1 0 1 1 1 0 FYVE zinc finger DUF4131 PF13567.1 gi|147919392|ref|YP_686869.1| - 0.006 16.0 2.7 0.0066 15.8 1.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) MENTAL PF10457.4 gi|147919392|ref|YP_686869.1| - 0.013 15.1 1.9 0.014 14.9 1.3 1.0 1 0 0 1 1 1 0 Cholesterol-capturing domain RseC_MucC PF04246.7 gi|147919392|ref|YP_686869.1| - 0.057 12.9 1.3 0.064 12.8 0.9 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.4 gi|147919392|ref|YP_686869.1| - 0.37 9.3 4.1 0.36 9.3 2.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FeoB_C PF07664.7 gi|147919392|ref|YP_686869.1| - 0.63 9.5 0.1 0.63 9.5 0.0 2.1 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus TcpE PF12648.2 gi|147919392|ref|YP_686869.1| - 0.93 9.6 6.5 1.1 9.4 4.5 1.1 1 0 0 1 1 1 0 TcpE family DUF2244 PF10003.4 gi|147919392|ref|YP_686869.1| - 0.93 8.8 5.4 1.1 8.6 3.7 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) OPT PF03169.10 gi|147919392|ref|YP_686869.1| - 2.5 6.3 12.6 2.8 6.2 8.8 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein Tic20 PF09685.5 gi|147919392|ref|YP_686869.1| - 3.2 7.7 9.0 3.5 7.6 6.3 1.1 1 0 0 1 1 1 0 Tic20-like protein DUF4191 PF13829.1 gi|147919392|ref|YP_686869.1| - 5.4 6.0 5.5 5.5 6.0 3.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) EMP70 PF02990.11 gi|147919392|ref|YP_686869.1| - 6.1 5.1 8.9 6.7 5.0 6.2 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 Cation_ATPase_C PF00689.16 gi|147919392|ref|YP_686869.1| - 8.1 5.9 12.7 9 5.7 8.8 1.0 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Alba PF01918.16 gi|147919394|ref|YP_686867.1| - 4.4e-18 64.6 0.3 6.2e-18 64.1 0.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|147919394|ref|YP_686867.1| - 0.009 15.6 0.4 0.011 15.3 0.3 1.3 1 1 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P Aminotran_1_2 PF00155.16 gi|147919395|ref|YP_686866.1| - 2e-61 207.9 0.0 2.3e-61 207.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|147919395|ref|YP_686866.1| - 1.7e-08 33.1 0.0 2.6e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|147919395|ref|YP_686866.1| - 4.3e-08 32.6 0.2 6.4e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|147919395|ref|YP_686866.1| - 4.8e-08 32.1 0.0 8e-08 31.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|147919395|ref|YP_686866.1| - 8.6e-07 27.9 0.0 2.3e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 Allinase Herpes_UL49_1 PF03117.9 gi|147919395|ref|YP_686866.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 UL49 family AAA_18 PF13238.1 gi|147919396|ref|YP_686865.1| - 2.6e-20 73.0 0.0 3.5e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147919396|ref|YP_686865.1| - 1.2e-12 48.6 0.0 2.2e-12 47.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|147919396|ref|YP_686865.1| - 5.4e-06 26.3 0.2 0.0027 17.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|147919396|ref|YP_686865.1| - 0.00017 21.5 0.1 0.00077 19.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain CoaE PF01121.15 gi|147919396|ref|YP_686865.1| - 0.0015 17.9 0.4 0.0022 17.4 0.1 1.5 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_19 PF13245.1 gi|147919396|ref|YP_686865.1| - 0.0038 16.9 0.4 0.014 15.0 0.1 2.1 2 0 0 2 2 2 1 Part of AAA domain SKI PF01202.17 gi|147919396|ref|YP_686865.1| - 0.0075 16.1 0.3 0.11 12.3 0.2 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|147919396|ref|YP_686865.1| - 0.016 15.3 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|147919396|ref|YP_686865.1| - 0.029 13.8 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|147919396|ref|YP_686865.1| - 0.037 12.8 0.4 0.26 10.0 0.1 2.0 2 0 0 2 2 2 0 ArgK protein PRK PF00485.13 gi|147919396|ref|YP_686865.1| - 0.044 13.3 0.0 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.5 gi|147919396|ref|YP_686865.1| - 0.049 12.8 0.0 0.17 11.0 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 LytR_C PF13399.1 gi|147919396|ref|YP_686865.1| - 0.055 13.8 0.1 0.52 10.7 0.1 2.1 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator AAA_5 PF07728.9 gi|147919396|ref|YP_686865.1| - 0.068 12.8 0.0 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|147919396|ref|YP_686865.1| - 0.082 13.0 0.0 0.18 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|147919396|ref|YP_686865.1| - 0.085 12.5 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 NTPase Zeta_toxin PF06414.7 gi|147919396|ref|YP_686865.1| - 0.095 11.7 0.1 0.17 10.9 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin KaiC PF06745.8 gi|147919396|ref|YP_686865.1| - 0.099 11.7 0.7 3.8 6.5 0.1 2.1 2 0 0 2 2 2 0 KaiC ATP_bind_2 PF03668.10 gi|147919396|ref|YP_686865.1| - 0.12 11.4 0.1 0.19 10.7 0.1 1.3 1 1 0 1 1 1 0 P-loop ATPase protein family MMR_HSR1 PF01926.18 gi|147919396|ref|YP_686865.1| - 0.14 12.1 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|147919396|ref|YP_686865.1| - 0.14 12.1 0.4 0.21 11.5 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain CDP-OH_P_transf PF01066.16 gi|147919397|ref|YP_686864.1| - 5.6e-15 55.4 11.0 4.3e-14 52.6 7.6 2.2 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF308 PF03729.8 gi|147919397|ref|YP_686864.1| - 0.031 14.2 3.3 0.031 14.2 2.3 3.4 3 2 0 3 3 3 0 Short repeat of unknown function (DUF308) DUF4079 PF13301.1 gi|147919397|ref|YP_686864.1| - 0.073 13.0 2.0 0.64 9.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4079) DUF3899 PF13038.1 gi|147919397|ref|YP_686864.1| - 1.9 8.7 5.0 10 6.3 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3899) HTH_3 PF01381.17 gi|147919398|ref|YP_686863.1| - 4.9e-10 39.1 0.3 7.5e-10 38.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147919398|ref|YP_686863.1| - 1.8e-06 27.9 0.3 2.9e-06 27.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|147919398|ref|YP_686863.1| - 3.6e-05 23.8 0.0 7.6e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|147919398|ref|YP_686863.1| - 0.0067 16.0 0.6 0.01 15.4 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3069 PF11269.3 gi|147919398|ref|YP_686863.1| - 0.065 13.3 0.1 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3069) HTH_37 PF13744.1 gi|147919398|ref|YP_686863.1| - 0.088 12.6 0.1 0.18 11.6 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.24 gi|147919399|ref|YP_686862.1| - 1.1e-44 151.8 0.0 2.9e-44 150.4 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|147919399|ref|YP_686862.1| - 3.1e-08 33.4 0.1 1.1e-07 31.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|147919399|ref|YP_686862.1| - 7e-07 29.3 0.0 1.7e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|147919399|ref|YP_686862.1| - 1.2e-06 28.7 0.2 0.00015 21.9 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147919399|ref|YP_686862.1| - 2.1e-06 27.8 0.1 0.00028 20.9 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|147919399|ref|YP_686862.1| - 6.9e-06 25.2 0.0 1.7e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DUF815 PF05673.8 gi|147919399|ref|YP_686862.1| - 3.6e-05 22.7 0.0 7e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|147919399|ref|YP_686862.1| - 5.6e-05 23.9 0.1 0.00022 22.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|147919399|ref|YP_686862.1| - 0.0005 19.7 0.1 0.0012 18.5 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|147919399|ref|YP_686862.1| - 0.00051 19.9 0.1 0.0014 18.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|147919399|ref|YP_686862.1| - 0.00052 19.1 0.0 0.00087 18.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Filament PF00038.16 gi|147919399|ref|YP_686862.1| - 0.0006 19.3 3.2 0.0013 18.2 2.2 1.5 1 0 0 1 1 1 1 Intermediate filament protein IstB_IS21 PF01695.12 gi|147919399|ref|YP_686862.1| - 0.0013 18.2 0.0 0.0025 17.2 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|147919399|ref|YP_686862.1| - 0.0013 18.6 0.0 0.0069 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|147919399|ref|YP_686862.1| - 0.0026 17.7 0.4 0.0053 16.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|147919399|ref|YP_686862.1| - 0.0027 17.2 0.2 0.0062 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_3 PF07726.6 gi|147919399|ref|YP_686862.1| - 0.0028 17.2 0.0 0.015 14.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|147919399|ref|YP_686862.1| - 0.0033 17.7 1.2 0.0072 16.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|147919399|ref|YP_686862.1| - 0.004 17.2 0.0 0.019 15.1 0.0 2.1 2 0 0 2 2 2 1 RNA helicase Sigma54_activ_2 PF14532.1 gi|147919399|ref|YP_686862.1| - 0.0043 17.1 0.0 0.014 15.4 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain TIP49 PF06068.8 gi|147919399|ref|YP_686862.1| - 0.0044 15.7 0.0 0.0087 14.8 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus Arch_ATPase PF01637.13 gi|147919399|ref|YP_686862.1| - 0.005 16.5 2.9 0.031 13.9 0.1 2.8 2 1 0 2 2 2 1 Archaeal ATPase Mg_chelatase PF01078.16 gi|147919399|ref|YP_686862.1| - 0.0057 15.8 0.5 0.017 14.3 0.0 1.9 3 0 0 3 3 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|147919399|ref|YP_686862.1| - 0.0073 15.7 0.1 0.084 12.3 0.1 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain KaiC PF06745.8 gi|147919399|ref|YP_686862.1| - 0.013 14.6 1.8 0.11 11.6 0.0 2.6 2 1 1 3 3 3 0 KaiC AAA_25 PF13481.1 gi|147919399|ref|YP_686862.1| - 0.013 14.8 1.1 0.19 11.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|147919399|ref|YP_686862.1| - 0.015 15.0 0.7 0.061 13.0 0.2 2.3 2 1 0 2 2 1 0 NTPase AAA_30 PF13604.1 gi|147919399|ref|YP_686862.1| - 0.038 13.5 1.4 0.24 10.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|147919399|ref|YP_686862.1| - 0.044 12.6 0.0 0.091 11.5 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Tropomyosin_1 PF12718.2 gi|147919399|ref|YP_686862.1| - 0.048 13.4 5.4 0.09 12.6 3.7 1.4 1 0 0 1 1 1 0 Tropomyosin like PhoH PF02562.11 gi|147919399|ref|YP_686862.1| - 0.049 12.8 0.1 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein Parvo_NS1 PF01057.12 gi|147919399|ref|YP_686862.1| - 0.057 12.2 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|147919399|ref|YP_686862.1| - 0.086 12.4 0.1 0.41 10.2 0.0 2.0 2 0 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|147919399|ref|YP_686862.1| - 0.096 12.9 0.1 0.38 11.0 0.0 2.1 2 0 0 2 2 2 0 ABC transporter AAA_11 PF13086.1 gi|147919399|ref|YP_686862.1| - 0.11 12.0 0.1 0.81 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain APG6 PF04111.7 gi|147919399|ref|YP_686862.1| - 0.21 10.5 1.2 0.37 9.7 0.8 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA_23 PF13476.1 gi|147919399|ref|YP_686862.1| - 2.2 8.5 7.0 17 5.6 0.0 2.8 2 1 1 3 3 3 0 AAA domain IFP_35_N PF07334.8 gi|147919399|ref|YP_686862.1| - 7.2 6.6 7.7 39 4.2 0.4 3.0 1 1 1 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus DUF356 PF04009.7 gi|147919400|ref|YP_686861.1| - 3e-41 139.8 0.2 3.5e-41 139.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) Sua5_yciO_yrdC PF01300.13 gi|147919401|ref|YP_686860.1| - 5.7e-47 159.2 0.0 6.5e-47 159.0 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Peptidase_M24 PF00557.19 gi|147919402|ref|YP_686859.1| - 2e-39 135.3 0.0 2.4e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 NTP_transf_2 PF01909.18 gi|147919403|ref|YP_686858.1| - 0.00096 19.4 0.2 0.0028 17.9 0.0 1.8 1 1 1 2 2 2 1 Nucleotidyltransferase domain Cas_Cas4 PF01930.12 gi|147919404|ref|YP_686857.1| - 4.7e-12 46.1 0.0 1.9e-09 37.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|147919404|ref|YP_686857.1| - 0.00021 20.7 2.5 0.00076 18.9 1.7 2.0 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily RNA_pol_Rpb1_6 PF04992.9 gi|147919404|ref|YP_686857.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 6 NfeD PF01957.13 gi|147919405|ref|YP_686856.1| - 8e-23 81.1 7.6 9.5e-23 80.9 5.3 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding FixH PF05751.6 gi|147919405|ref|YP_686856.1| - 1.1 9.0 7.4 5 6.9 0.6 2.3 2 0 0 2 2 2 0 FixH Band_7 PF01145.20 gi|147919406|ref|YP_686855.1| - 9e-33 113.6 1.0 9e-33 113.6 0.7 1.5 2 0 0 2 2 2 1 SPFH domain / Band 7 family AhpC-TSA PF00578.16 gi|147919407|ref|YP_686854.1| - 1.2e-24 86.4 0.0 1.4e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147919407|ref|YP_686854.1| - 1.9e-13 50.2 0.0 2.2e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|147919407|ref|YP_686854.1| - 0.02 14.8 0.0 0.057 13.3 0.0 1.6 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme DUF531 PF04407.7 gi|147919408|ref|YP_686853.1| - 3.8e-85 284.1 0.0 4.3e-85 283.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.1 gi|147919408|ref|YP_686853.1| - 1.3e-06 27.6 0.0 1.6e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltrn_RNA_4 PF09936.4 gi|147919408|ref|YP_686853.1| - 0.0042 16.6 0.0 0.0081 15.6 0.0 1.4 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Glyco_hydro_62 PF03664.8 gi|147919408|ref|YP_686853.1| - 0.096 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 62 Peptidase_M50B PF13398.1 gi|147919410|ref|YP_686851.1| - 0.00025 20.5 11.5 0.002 17.5 8.0 2.0 1 1 0 1 1 1 1 Peptidase M50B-like Peptidase_M50 PF02163.17 gi|147919410|ref|YP_686851.1| - 0.15 11.0 6.0 0.48 9.3 4.1 2.1 1 1 0 1 1 1 0 Peptidase family M50 DUF996 PF06195.8 gi|147919410|ref|YP_686851.1| - 0.89 9.5 11.5 0.26 11.3 2.1 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF996) DUF4010 PF13194.1 gi|147919411|ref|YP_686850.1| - 0.082 12.2 20.4 0.11 11.7 14.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) MscS_TM PF12794.2 gi|147919411|ref|YP_686850.1| - 3.1 6.3 13.4 0.69 8.4 5.0 2.0 1 1 2 3 3 3 0 Mechanosensitive ion channel inner membrane domain 1 Cytochrome-c551 PF10643.4 gi|147919411|ref|YP_686850.1| - 5.2 6.2 9.9 0.29 10.3 2.7 1.9 1 1 1 2 2 2 0 Photosystem P840 reaction-centre cytochrome c-551 Methyltransf_31 PF13847.1 gi|147919412|ref|YP_686849.1| - 3.8e-15 55.7 0.0 8.2e-14 51.4 0.0 2.2 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147919412|ref|YP_686849.1| - 1.3e-13 51.1 0.5 4.3e-13 49.5 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919412|ref|YP_686849.1| - 3.3e-13 50.2 0.1 9.6e-13 48.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147919412|ref|YP_686849.1| - 7.4e-11 42.4 0.1 2.7e-10 40.6 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147919412|ref|YP_686849.1| - 2.5e-10 40.3 0.0 5.7e-10 39.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147919412|ref|YP_686849.1| - 4e-09 36.5 0.1 3.7e-08 33.3 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147919412|ref|YP_686849.1| - 7.6e-07 29.5 0.0 4.1e-06 27.1 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|147919412|ref|YP_686849.1| - 1.2e-06 27.4 0.0 1.4e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|147919412|ref|YP_686849.1| - 3.9e-06 26.3 0.0 7e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|147919412|ref|YP_686849.1| - 1.3e-05 24.4 0.0 0.00016 20.8 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|147919412|ref|YP_686849.1| - 0.00014 21.1 0.0 0.00051 19.2 0.0 1.8 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.5 gi|147919412|ref|YP_686849.1| - 0.0086 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|147919412|ref|YP_686849.1| - 0.0095 15.4 0.0 0.028 13.9 0.0 1.8 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NNMT_PNMT_TEMT PF01234.12 gi|147919412|ref|YP_686849.1| - 0.012 14.6 0.0 0.02 13.8 0.0 1.4 1 0 0 1 1 1 0 NNMT/PNMT/TEMT family UPF0020 PF01170.13 gi|147919412|ref|YP_686849.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|147919412|ref|YP_686849.1| - 0.11 11.9 0.0 2.2 7.7 0.0 2.1 2 0 0 2 2 2 0 DNA methylase polyprenyl_synt PF00348.12 gi|147919413|ref|YP_685765.1| - 2e-55 187.4 1.1 2.4e-55 187.1 0.8 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase UbiA PF01040.13 gi|147919414|ref|YP_686847.1| - 3.2e-34 118.3 31.0 4.2e-34 117.9 21.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1743 PF08489.6 gi|147919416|ref|YP_686845.1| - 1e-06 28.4 1.0 2.3e-05 24.0 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF1743) HTH_28 PF13518.1 gi|147919416|ref|YP_686845.1| - 0.0022 17.9 0.0 0.006 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|147919416|ref|YP_686845.1| - 0.004 16.8 0.0 0.01 15.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.1 gi|147919416|ref|YP_686845.1| - 0.008 16.3 0.1 0.034 14.3 0.1 2.1 2 1 0 2 2 2 1 Winged helix-turn helix MarR_2 PF12802.2 gi|147919416|ref|YP_686845.1| - 0.053 13.2 0.0 0.18 11.4 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_43 PF09904.4 gi|147919416|ref|YP_686845.1| - 0.054 13.3 0.1 0.27 11.0 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|147919416|ref|YP_686845.1| - 0.069 12.7 0.0 0.22 11.1 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain Topoisom_bac PF01131.15 gi|147919417|ref|YP_686844.1| - 8.5e-114 380.5 0.0 1.2e-113 379.9 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|147919417|ref|YP_686844.1| - 1.4e-16 60.2 0.1 3e-16 59.1 0.1 1.6 1 0 0 1 1 1 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|147919417|ref|YP_686844.1| - 5.5e-13 48.1 8.0 6.8e-13 47.8 1.7 2.4 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger GatB_N PF02934.10 gi|147919418|ref|YP_686843.1| - 5.6e-113 376.6 0.0 7.9e-113 376.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|147919418|ref|YP_686843.1| - 3.8e-38 130.5 0.3 5.9e-38 129.9 0.2 1.3 1 0 0 1 1 1 1 GatB domain zf-Di19 PF05605.7 gi|147919418|ref|YP_686843.1| - 0.026 14.6 2.0 0.05 13.7 1.4 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Amidase PF01425.16 gi|147919419|ref|YP_686842.1| - 5e-153 510.0 0.1 5.8e-153 509.8 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|147919420|ref|YP_686841.1| - 2.3e-24 84.9 0.0 2.8e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Asn_synthase PF00733.16 gi|147919421|ref|YP_686840.1| - 8.3e-52 176.1 0.3 1.4e-51 175.4 0.2 1.3 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|147919421|ref|YP_686840.1| - 7e-23 80.7 0.0 2.5e-22 78.9 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|147919421|ref|YP_686840.1| - 1.5e-18 67.0 0.0 5.7e-18 65.1 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|147919421|ref|YP_686840.1| - 2.1e-05 23.3 0.8 0.074 11.7 0.0 3.1 2 1 1 3 3 3 2 Glutamine amidotransferases class-II NAD_synthase PF02540.12 gi|147919421|ref|YP_686840.1| - 0.075 11.9 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 NAD synthase tRNA-synt_2d PF01409.15 gi|147919421|ref|YP_686840.1| - 0.082 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) DUF4145 PF13643.1 gi|147919421|ref|YP_686840.1| - 0.12 12.2 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) DUF1495 PF07381.6 gi|147919422|ref|YP_686839.1| - 2.3e-05 23.9 0.1 4.8e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain (DUF1495) DegQ PF08181.6 gi|147919422|ref|YP_686839.1| - 0.17 11.5 0.0 0.17 11.5 0.0 2.4 3 0 0 3 3 3 0 DegQ (SacQ) family Transglut_core PF01841.14 gi|147919424|ref|YP_686837.1| - 1.2e-08 35.1 0.1 2.3e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Glycos_transf_2 PF00535.21 gi|147919427|ref|YP_686834.1| - 1.2e-15 57.5 0.0 2.2e-15 56.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147919427|ref|YP_686834.1| - 4.5e-05 23.3 0.0 9.4e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|147919427|ref|YP_686834.1| - 0.0036 17.4 0.0 0.005 16.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Lyase_1 PF00206.15 gi|147919428|ref|YP_686833.1| - 9.1e-53 179.4 0.1 1.4e-52 178.8 0.1 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|147919428|ref|YP_686833.1| - 1.5e-27 95.4 0.3 7.7e-27 93.1 0.1 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus GDPD PF03009.12 gi|147919429|ref|YP_686832.1| - 3.9e-37 128.1 0.2 5.7e-35 121.0 0.2 2.1 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|147919429|ref|YP_686832.1| - 2.7e-05 24.1 0.1 0.038 14.1 0.1 2.5 2 0 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family ABC2_membrane_3 PF12698.2 gi|147919430|ref|YP_686831.1| - 0.027 13.5 1.5 0.03 13.3 1.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4307 PF14155.1 gi|147919430|ref|YP_686831.1| - 0.12 12.1 0.3 0.21 11.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) tRNA_anti-like PF12869.2 gi|147919430|ref|YP_686831.1| - 0.17 11.3 0.8 0.3 10.5 0.6 1.3 1 0 0 1 1 1 0 tRNA_anti-like Wzz PF02706.10 gi|147919430|ref|YP_686831.1| - 0.26 11.0 2.7 0.35 10.6 1.9 1.5 1 1 0 1 1 1 0 Chain length determinant protein tRNA-synt_1b PF00579.20 gi|147919431|ref|YP_686830.1| - 6.2e-57 192.9 0.0 7e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|147919431|ref|YP_686830.1| - 0.00017 20.3 0.0 0.08 11.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) RQC PF09382.5 gi|147919432|ref|YP_686828.1| - 2.1e-23 82.0 0.0 3.8e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 RQC domain HRDC PF00570.18 gi|147919432|ref|YP_686828.1| - 1.1e-18 66.7 0.0 2.5e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 HRDC domain HHH PF00633.18 gi|147919432|ref|YP_686828.1| - 0.0002 20.8 0.4 0.003 17.1 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_processg_A PF02481.10 gi|147919432|ref|YP_686828.1| - 0.0016 17.3 0.0 0.0032 16.3 0.0 1.4 1 0 0 1 1 1 1 DNA recombination-mediator protein A HHH_5 PF14520.1 gi|147919432|ref|YP_686828.1| - 0.0021 18.1 0.1 0.018 15.1 0.0 2.5 3 1 0 3 3 3 1 Helix-hairpin-helix domain DUF3782 PF12644.2 gi|147919432|ref|YP_686828.1| - 0.072 12.8 0.5 0.36 10.6 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3782) DUF4327 PF14217.1 gi|147919432|ref|YP_686828.1| - 0.081 12.7 0.1 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4327) UN_NPL4 PF11543.3 gi|147919432|ref|YP_686828.1| - 0.092 13.0 0.4 0.52 10.6 0.1 2.1 2 0 0 2 2 2 0 Nuclear pore localisation protein NPL4 DUF4646 PF15496.1 gi|147919432|ref|YP_686828.1| - 0.18 11.8 0.3 1.2 9.2 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4646) CobS PF02654.10 gi|147919433|ref|YP_686827.1| - 0.083 12.4 2.6 0.1 12.1 1.8 1.1 1 0 0 1 1 1 0 Cobalamin-5-phosphate synthase ATG22 PF11700.3 gi|147919433|ref|YP_686827.1| - 0.098 11.1 5.3 0.1 11.0 3.7 1.1 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like DUF4418 PF14387.1 gi|147919433|ref|YP_686827.1| - 0.14 11.9 3.3 0.2 11.3 2.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF2628 PF10947.3 gi|147919433|ref|YP_686827.1| - 0.33 10.7 11.5 0.4 10.4 8.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF1304 PF06993.7 gi|147919433|ref|YP_686827.1| - 0.37 10.5 7.0 0.27 10.9 3.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1304) SPC25 PF06703.6 gi|147919433|ref|YP_686827.1| - 0.47 10.0 2.1 0.63 9.6 1.5 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) 2TM PF13239.1 gi|147919433|ref|YP_686827.1| - 0.66 10.0 10.9 0.3 11.1 6.2 1.4 1 1 0 1 1 1 0 2TM domain SAYSvFN PF10260.4 gi|147919433|ref|YP_686827.1| - 1.1 9.0 7.3 2.2 8.1 1.8 2.2 1 1 1 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) YfhO PF09586.5 gi|147919433|ref|YP_686827.1| - 1.2 7.0 5.1 1.1 7.1 3.5 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO YqhR PF11085.3 gi|147919433|ref|YP_686827.1| - 3 7.3 6.7 3.4 7.1 4.7 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR NfeD PF01957.13 gi|147919433|ref|YP_686827.1| - 5 7.2 9.0 5.6 7.0 6.3 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF2975 PF11188.3 gi|147919433|ref|YP_686827.1| - 5.2 6.7 9.6 3.8 7.2 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) MARVEL PF01284.18 gi|147919433|ref|YP_686827.1| - 6.3 6.6 10.7 8.9 6.1 7.4 1.4 1 1 0 1 1 1 0 Membrane-associating domain DUF2207 PF09972.4 gi|147919433|ref|YP_686827.1| - 9.6 4.6 7.5 10 4.5 5.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) FA_desaturase PF00487.19 gi|147919434|ref|YP_686826.1| - 0.047 13.1 0.9 0.05 13.0 0.6 1.0 1 0 0 1 1 1 0 Fatty acid desaturase UbiA PF01040.13 gi|147919435|ref|YP_686825.1| - 0.017 14.3 6.3 0.025 13.7 4.4 1.2 1 0 0 1 1 1 0 UbiA prenyltransferase family MFS_1 PF07690.11 gi|147919435|ref|YP_686825.1| - 0.79 8.3 12.2 1 8.0 8.5 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily AMO PF02461.11 gi|147919435|ref|YP_686825.1| - 1.5 8.4 6.3 1.9 8.1 4.4 1.1 1 0 0 1 1 1 0 Ammonia monooxygenase DUF2157 PF09925.4 gi|147919435|ref|YP_686825.1| - 3.8 7.1 11.0 5.6 6.5 7.6 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) GPI2 PF06432.6 gi|147919435|ref|YP_686825.1| - 5.5 6.2 8.4 0.73 9.1 3.0 1.6 1 1 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase PGM_PMM_I PF02878.11 gi|147919437|ref|YP_686823.1| - 2e-41 140.7 0.3 6e-41 139.1 0.2 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|147919437|ref|YP_686823.1| - 3.7e-26 91.3 0.0 7.9e-26 90.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|147919437|ref|YP_686823.1| - 1.2e-24 86.5 0.5 3.5e-24 85.1 0.2 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|147919437|ref|YP_686823.1| - 1.2e-12 47.5 0.0 4.1e-12 45.9 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain MoaE PF02391.12 gi|147919438|ref|YP_686822.1| - 7.6e-25 87.0 1.7 1.2e-24 86.3 1.2 1.4 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|147919438|ref|YP_686822.1| - 1.9e-20 72.9 0.7 1.9e-20 72.9 0.5 1.9 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|147919438|ref|YP_686822.1| - 0.0023 17.9 0.4 0.0045 16.9 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.18 gi|147919438|ref|YP_686822.1| - 0.0031 17.4 0.2 0.008 16.1 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|147919438|ref|YP_686822.1| - 0.0037 17.7 0.1 0.013 16.0 0.1 1.9 1 0 0 1 1 1 1 Miro-like protein AAA_14 PF13173.1 gi|147919438|ref|YP_686822.1| - 0.0077 16.1 0.1 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147919438|ref|YP_686822.1| - 0.0098 16.7 2.0 0.17 12.6 1.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|147919438|ref|YP_686822.1| - 0.014 15.6 0.6 0.13 12.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|147919438|ref|YP_686822.1| - 0.021 14.3 0.8 0.094 12.2 0.2 2.3 2 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation ChuX_HutX PF06228.8 gi|147919438|ref|YP_686822.1| - 0.053 12.9 0.2 0.98 8.7 0.0 2.7 2 1 1 3 3 3 0 Haem utilisation ChuX/HutX AAA_25 PF13481.1 gi|147919438|ref|YP_686822.1| - 0.06 12.7 0.6 0.24 10.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain GTP_EFTU PF00009.22 gi|147919438|ref|YP_686822.1| - 0.065 12.6 0.2 0.11 11.9 0.2 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain zf-ZPR1 PF03367.8 gi|147919438|ref|YP_686822.1| - 0.082 12.0 0.2 0.16 11.1 0.1 1.4 1 0 0 1 1 1 0 ZPR1 zinc-finger domain NACHT PF05729.7 gi|147919438|ref|YP_686822.1| - 0.088 12.4 0.5 0.36 10.4 0.2 2.0 2 0 0 2 2 2 0 NACHT domain SRPRB PF09439.5 gi|147919438|ref|YP_686822.1| - 0.088 12.0 0.0 0.17 11.0 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_33 PF13671.1 gi|147919438|ref|YP_686822.1| - 0.12 12.2 0.1 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|147919438|ref|YP_686822.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|147919438|ref|YP_686822.1| - 0.45 10.2 3.7 0.74 9.5 0.9 2.3 2 0 0 2 2 2 0 NTPase SH3_4 PF06347.8 gi|147919439|ref|YP_686821.1| - 0.07 12.6 1.5 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial SH3 domain Pribosyltran_N PF13793.1 gi|147919440|ref|YP_686820.1| - 1.5e-23 82.7 0.0 2.7e-22 78.6 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|147919440|ref|YP_686820.1| - 3.3e-12 46.2 0.4 1.1e-11 44.5 0.3 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|147919440|ref|YP_686820.1| - 1.3e-05 24.9 0.5 2.4e-05 24.1 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|147919440|ref|YP_686820.1| - 0.0034 16.6 0.0 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase LysE PF01810.13 gi|147919441|ref|YP_686819.1| - 3e-31 108.1 15.4 3.8e-31 107.8 10.7 1.0 1 0 0 1 1 1 1 LysE type translocator DUF1469 PF07332.6 gi|147919441|ref|YP_686819.1| - 0.0036 17.0 1.4 0.0036 17.0 1.0 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF1469) PIRT PF15099.1 gi|147919441|ref|YP_686819.1| - 0.014 14.6 0.4 0.014 14.6 0.3 2.1 2 1 0 2 2 2 0 Phosphoinositide-interacting protein family Eapp_C PF10238.4 gi|147919442|ref|YP_686818.1| - 0.0089 15.9 5.8 0.01 15.7 4.0 1.1 1 0 0 1 1 1 1 E2F-associated phosphoprotein zf-C3HC4_2 PF13923.1 gi|147919442|ref|YP_686818.1| - 0.13 12.3 14.8 2.8 8.0 10.3 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) tRNA-synt_1g PF09334.6 gi|147919442|ref|YP_686818.1| - 0.14 10.8 2.9 0.15 10.7 2.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (M) FYVE PF01363.16 gi|147919442|ref|YP_686818.1| - 0.17 11.8 16.7 0.62 9.9 11.6 1.9 1 1 0 1 1 1 0 FYVE zinc finger Siva PF05458.7 gi|147919442|ref|YP_686818.1| - 0.2 11.2 6.7 0.21 11.1 4.6 1.2 1 0 0 1 1 1 0 Cd27 binding protein (Siva) zf-B_box PF00643.19 gi|147919442|ref|YP_686818.1| - 0.23 11.4 15.4 6.2 6.7 10.7 2.1 1 1 0 1 1 1 0 B-box zinc finger TerY-C PF15616.1 gi|147919442|ref|YP_686818.1| - 7.9 6.4 13.0 7.9 6.4 8.8 1.2 1 1 0 1 1 1 0 TerY-C metal binding domain DUF4428 PF14471.1 gi|147919442|ref|YP_686818.1| - 9.3 6.0 12.1 8.2 6.2 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) IBR PF01485.16 gi|147919442|ref|YP_686818.1| - 9.6 6.1 16.7 90 3.0 11.6 2.3 1 1 0 1 1 1 0 IBR domain UDPG_MGDP_dh_N PF03721.9 gi|147919443|ref|YP_686817.1| - 1e-67 227.1 0.1 2.6e-67 225.8 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|147919443|ref|YP_686817.1| - 8.4e-35 118.8 0.0 1.7e-34 117.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|147919443|ref|YP_686817.1| - 4.6e-28 97.4 0.0 5.8e-27 93.9 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|147919443|ref|YP_686817.1| - 1.7e-07 31.0 0.1 8.8e-07 28.7 0.0 2.2 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|147919443|ref|YP_686817.1| - 3.1e-06 27.5 0.0 0.0094 16.3 0.0 3.1 4 0 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|147919443|ref|YP_686817.1| - 0.00015 21.2 0.0 0.00061 19.2 0.0 1.9 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|147919443|ref|YP_686817.1| - 0.00036 20.2 0.0 0.0007 19.2 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|147919443|ref|YP_686817.1| - 0.0032 17.9 0.0 0.035 14.6 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|147919443|ref|YP_686817.1| - 0.069 12.9 0.0 0.39 10.5 0.0 2.2 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Nitro_FeMo-Co PF02579.12 gi|147919445|ref|YP_686815.1| - 6.5e-06 26.1 0.1 8e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Nitro_FeMo-Co PF02579.12 gi|147919446|ref|YP_686814.1| - 7.5e-20 70.8 0.0 8.8e-20 70.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF3006 PF11213.3 gi|147919447|ref|YP_686813.1| - 2.8e-22 78.2 0.7 3.1e-22 78.0 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) Phage_30_8 PF06019.6 gi|147919447|ref|YP_686813.1| - 0.14 11.8 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Phage GP30.8 protein Lactamase_B PF00753.22 gi|147919448|ref|YP_686812.1| - 1.7e-14 53.8 1.8 4.2e-14 52.6 1.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147919448|ref|YP_686812.1| - 6.6e-05 22.5 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|147919448|ref|YP_686812.1| - 0.00062 19.5 0.2 0.0011 18.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Abhydrolase_6 PF12697.2 gi|147919449|ref|YP_686811.1| - 4.9e-22 78.9 0.0 6.4e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|147919449|ref|YP_686811.1| - 4e-11 42.9 0.0 2.4e-09 37.0 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|147919449|ref|YP_686811.1| - 2.8e-10 40.1 0.0 5.8e-10 39.0 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|147919449|ref|YP_686811.1| - 0.00039 19.7 0.0 0.071 12.3 0.0 2.4 3 0 0 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|147919449|ref|YP_686811.1| - 0.00071 19.2 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|147919449|ref|YP_686811.1| - 0.0026 18.0 0.0 0.0045 17.2 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_2 PF02230.11 gi|147919449|ref|YP_686811.1| - 0.0033 16.8 0.0 0.011 15.2 0.0 1.8 1 1 1 2 2 2 1 Phospholipase/Carboxylesterase pKID PF02173.12 gi|147919449|ref|YP_686811.1| - 0.092 11.9 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 pKID domain Helicase_C_2 PF13307.1 gi|147919450|ref|YP_686810.1| - 5.8e-28 97.9 0.0 1.4e-27 96.6 0.0 1.7 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|147919450|ref|YP_686810.1| - 2.2e-20 72.7 0.2 5.5e-20 71.4 0.1 1.7 1 1 0 1 1 1 1 DEAD_2 HEAT_2 PF13646.1 gi|147919450|ref|YP_686810.1| - 3e-17 62.6 0.7 3.3e-16 59.3 0.1 3.0 3 0 0 3 3 3 1 HEAT repeats DEAD PF00270.24 gi|147919450|ref|YP_686810.1| - 3.4e-11 42.9 0.1 6.8e-07 28.9 0.0 3.2 3 0 0 3 3 3 2 DEAD/DEAH box helicase HEAT_PBS PF03130.11 gi|147919450|ref|YP_686810.1| - 2.6e-08 33.5 0.0 0.0079 16.5 0.0 3.0 2 0 0 2 2 2 2 PBS lyase HEAT-like repeat SNF2_N PF00176.18 gi|147919450|ref|YP_686810.1| - 3.3e-07 29.3 0.0 0.0043 15.8 0.0 2.2 2 0 0 2 2 2 2 SNF2 family N-terminal domain PhoH PF02562.11 gi|147919450|ref|YP_686810.1| - 7.7e-06 25.2 0.6 0.00049 19.3 0.2 2.4 2 0 0 2 2 2 1 PhoH-like protein ResIII PF04851.10 gi|147919450|ref|YP_686810.1| - 2.5e-05 24.1 1.2 0.0014 18.5 0.8 2.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|147919450|ref|YP_686810.1| - 5.5e-05 22.8 1.2 0.00016 21.2 0.8 1.8 1 0 0 1 1 1 1 AAA domain HEAT_EZ PF13513.1 gi|147919450|ref|YP_686810.1| - 0.0027 18.1 0.8 0.023 15.1 0.0 3.1 2 1 1 3 3 3 1 HEAT-like repeat HEAT PF02985.17 gi|147919450|ref|YP_686810.1| - 0.0044 16.9 0.1 0.8 9.9 0.0 3.2 3 0 0 3 3 2 1 HEAT repeat T2SE PF00437.15 gi|147919450|ref|YP_686810.1| - 0.011 14.7 0.3 0.24 10.2 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|147919450|ref|YP_686810.1| - 0.011 15.4 0.3 0.034 13.9 0.2 1.8 1 0 0 1 1 1 0 Part of AAA domain Arm PF00514.18 gi|147919450|ref|YP_686810.1| - 0.02 14.7 0.0 0.24 11.2 0.0 2.5 2 0 0 2 2 2 0 Armadillo/beta-catenin-like repeat Radical_SAM PF04055.16 gi|147919450|ref|YP_686810.1| - 0.028 14.5 0.0 0.076 13.1 0.0 1.7 1 0 0 1 1 1 0 Radical SAM superfamily AAA_11 PF13086.1 gi|147919450|ref|YP_686810.1| - 0.037 13.6 0.1 0.095 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|147919450|ref|YP_686810.1| - 0.15 11.0 0.9 2.8 6.7 0.1 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|147919450|ref|YP_686810.1| - 0.46 10.6 2.0 17 5.5 0.1 2.9 1 1 1 2 2 2 0 AAA domain Pro_CA PF00484.14 gi|147919451|ref|YP_686809.1| - 1.6e-30 106.1 0.0 2.5e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 Carbonic anhydrase FrhB_FdhB_C PF04432.8 gi|147919452|ref|YP_686808.1| - 9.9e-45 151.8 0.0 1.3e-44 151.4 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147919452|ref|YP_686808.1| - 1.8e-31 107.8 0.7 4.3e-31 106.5 0.5 1.7 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Oxidored_q6 PF01058.17 gi|147919453|ref|YP_686807.1| - 1.6e-29 102.1 2.1 1.6e-29 102.1 1.5 2.2 2 1 0 2 2 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|147919453|ref|YP_686807.1| - 1.1e-10 40.6 9.8 2.4e-07 30.0 0.9 4.0 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919453|ref|YP_686807.1| - 1.3e-09 37.7 10.4 1.3e-09 37.7 7.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919453|ref|YP_686807.1| - 1.8e-08 34.5 9.7 1.8e-08 34.5 6.7 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919453|ref|YP_686807.1| - 3.1e-08 33.8 11.2 3.1e-08 33.8 7.7 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919453|ref|YP_686807.1| - 3.6e-07 29.7 17.0 0.00026 20.7 0.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919453|ref|YP_686807.1| - 4.9e-06 26.1 13.7 0.0002 21.0 1.8 4.6 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147919453|ref|YP_686807.1| - 0.00036 20.6 13.4 0.0054 16.9 1.5 4.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919453|ref|YP_686807.1| - 0.00061 20.4 0.7 0.00061 20.4 0.5 3.3 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|147919453|ref|YP_686807.1| - 0.00074 19.8 10.3 0.018 15.3 0.7 3.0 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|147919453|ref|YP_686807.1| - 0.0015 18.5 28.2 0.0037 17.2 11.2 3.3 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919453|ref|YP_686807.1| - 0.0016 18.9 10.6 0.19 12.2 0.7 3.1 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|147919453|ref|YP_686807.1| - 0.0044 16.8 22.5 0.014 15.2 3.3 3.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919453|ref|YP_686807.1| - 0.03 14.6 1.0 0.03 14.6 0.7 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919453|ref|YP_686807.1| - 0.049 14.0 23.9 0.057 13.8 2.6 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain HycI PF01750.13 gi|147919454|ref|YP_686806.1| - 3.3e-33 114.0 0.0 3.9e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_31 PF13847.1 gi|147919454|ref|YP_686806.1| - 0.084 12.4 0.1 0.21 11.1 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain NiFeSe_Hases PF00374.14 gi|147919455|ref|YP_686805.1| - 2.7e-34 118.8 7.6 1.5e-14 53.6 0.0 4.6 1 1 1 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q1 PF00361.15 gi|147919456|ref|YP_686804.1| - 5e-57 193.2 27.3 5e-57 193.2 18.9 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|147919456|ref|YP_686804.1| - 0.00027 20.4 0.5 0.00027 20.4 0.3 3.4 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|147919458|ref|YP_686802.1| - 0.0001 21.8 6.8 0.0001 21.8 4.7 2.3 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L VIT1 PF01988.14 gi|147919458|ref|YP_686802.1| - 2.6 7.4 18.0 2.2 7.7 4.6 2.3 2 0 0 2 2 2 0 VIT family Oxidored_q1 PF00361.15 gi|147919459|ref|YP_686801.1| - 7.3e-53 179.5 17.9 7.3e-53 179.5 12.4 2.9 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|147919459|ref|YP_686801.1| - 0.0038 16.7 2.3 0.017 14.7 1.6 2.2 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Complex1_49kDa PF00346.14 gi|147919460|ref|YP_686800.1| - 4.4e-33 114.4 0.0 1.3e-26 93.2 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|147919460|ref|YP_686800.1| - 1.4e-23 83.1 0.0 2.4e-23 82.3 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|147919460|ref|YP_686800.1| - 3.9e-07 29.2 0.0 0.0024 16.7 0.0 2.2 2 0 0 2 2 2 2 Nickel-dependent hydrogenase DUF479 PF04336.7 gi|147919460|ref|YP_686800.1| - 0.058 13.4 0.0 29 4.8 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function, DUF479 Oxidored_q6 PF01058.17 gi|147919461|ref|YP_686799.1| - 3.2e-30 104.4 0.2 4.8e-30 103.8 0.1 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|147919461|ref|YP_686799.1| - 6.7e-11 41.3 19.2 4e-07 29.3 2.2 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919461|ref|YP_686799.1| - 6.1e-10 38.7 14.2 8.8e-10 38.2 7.8 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919461|ref|YP_686799.1| - 7.7e-10 38.2 18.1 2.4e-07 30.3 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919461|ref|YP_686799.1| - 2e-09 37.7 33.7 7.8e-06 26.1 8.8 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919461|ref|YP_686799.1| - 3.7e-07 29.6 18.8 5.3e-05 22.8 2.2 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919461|ref|YP_686799.1| - 1.2e-06 29.1 10.0 0.0004 21.0 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|147919461|ref|YP_686799.1| - 2.1e-06 27.9 5.1 0.016 15.5 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919461|ref|YP_686799.1| - 3.1e-05 23.9 12.7 0.0082 16.1 1.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919461|ref|YP_686799.1| - 6.2e-05 23.1 12.2 6.2e-05 23.1 8.5 2.4 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919461|ref|YP_686799.1| - 0.0011 19.0 19.5 0.016 15.5 3.0 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919461|ref|YP_686799.1| - 0.01 15.6 15.6 0.15 11.9 9.0 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919461|ref|YP_686799.1| - 0.016 15.6 5.8 0.016 15.6 4.0 3.5 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147919461|ref|YP_686799.1| - 0.067 13.7 17.2 0.5 10.9 1.4 3.3 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147919461|ref|YP_686799.1| - 0.19 12.1 11.5 1.7 9.0 2.1 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|147919461|ref|YP_686799.1| - 2.9 8.3 18.8 2.3 8.7 2.3 3.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Usp PF00582.21 gi|147919462|ref|YP_686798.1| - 1.6e-27 96.3 0.1 1.9e-27 96.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.17 gi|147919462|ref|YP_686798.1| - 0.045 13.2 0.0 0.16 11.3 0.0 1.7 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain Form_Nir_trans PF01226.12 gi|147919463|ref|YP_686797.1| - 1.6e-90 302.4 36.0 1.8e-90 302.1 24.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Molybdopterin PF00384.17 gi|147919464|ref|YP_686796.1| - 4.4e-104 348.6 0.0 5.3e-104 348.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|147919464|ref|YP_686796.1| - 1.8e-32 111.4 0.0 3.3e-32 110.5 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|147919464|ref|YP_686796.1| - 1.8e-22 78.9 1.2 3.9e-22 77.8 0.8 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.17 gi|147919464|ref|YP_686796.1| - 0.059 12.9 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 SIS domain FrhB_FdhB_C PF04432.8 gi|147919465|ref|YP_686795.1| - 5.8e-35 120.0 0.4 1.3e-34 118.9 0.2 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147919465|ref|YP_686795.1| - 3.1e-24 84.6 0.1 5.7e-24 83.7 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|147919465|ref|YP_686795.1| - 9.4e-11 41.5 7.2 1.5e-10 40.8 3.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919465|ref|YP_686795.1| - 6.1e-07 29.7 6.4 0.0026 18.1 0.3 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919465|ref|YP_686795.1| - 1.3e-06 28.1 12.9 2.1e-05 24.2 6.7 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919465|ref|YP_686795.1| - 9.1e-06 25.8 12.8 1.6e-05 25.1 6.5 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919465|ref|YP_686795.1| - 3.7e-05 23.9 7.3 3.7e-05 23.9 5.0 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919465|ref|YP_686795.1| - 6e-05 22.7 11.4 0.021 14.7 2.0 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919465|ref|YP_686795.1| - 0.00036 20.3 9.2 0.091 12.6 0.4 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919465|ref|YP_686795.1| - 0.0011 18.4 17.6 0.02 14.4 4.4 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919465|ref|YP_686795.1| - 0.0015 18.8 15.3 0.0029 17.9 8.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919465|ref|YP_686795.1| - 0.0087 16.3 3.2 0.0087 16.3 2.2 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|147919465|ref|YP_686795.1| - 0.014 14.9 4.7 0.26 10.9 0.1 2.9 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SAE2 PF08573.5 gi|147919465|ref|YP_686795.1| - 0.024 15.3 0.1 0.053 14.2 0.1 1.6 1 0 0 1 1 1 0 DNA repair protein endonuclease SAE2/CtIP C-terminus Fer4_6 PF12837.2 gi|147919465|ref|YP_686795.1| - 0.026 14.4 4.9 0.026 14.4 3.4 4.0 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919465|ref|YP_686795.1| - 2.2 9.1 16.9 0.51 11.1 0.2 3.6 3 2 1 4 4 4 0 4Fe-4S double cluster binding domain Pro_CA PF00484.14 gi|147919466|ref|YP_686794.1| - 1.4e-30 106.3 0.0 2.1e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase PELOTA_1 PF15608.1 gi|147919466|ref|YP_686794.1| - 0.023 14.4 0.0 0.059 13.1 0.0 1.8 1 0 0 1 1 1 0 PELOTA RNA binding domain DUF1297 PF06973.7 gi|147919467|ref|YP_686793.1| - 2.3e-78 261.8 0.0 3.2e-78 261.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|147919467|ref|YP_686793.1| - 1.3e-50 170.3 0.0 2.1e-50 169.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|147919467|ref|YP_686793.1| - 0.0064 16.2 0.0 0.049 13.3 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain DUF1768 PF08719.6 gi|147919467|ref|YP_686793.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1768) Molybdopterin PF00384.17 gi|147919468|ref|YP_686792.1| - 5.6e-100 335.0 0.0 6.6e-100 334.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|147919468|ref|YP_686792.1| - 5.5e-32 109.8 0.0 9.5e-32 109.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|147919468|ref|YP_686792.1| - 1.7e-21 75.7 1.9 3.8e-21 74.6 1.3 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain FrhB_FdhB_N PF04422.8 gi|147919469|ref|YP_686791.1| - 3.7e-23 81.1 0.1 6.4e-23 80.4 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term FrhB_FdhB_C PF04432.8 gi|147919469|ref|YP_686791.1| - 3.6e-21 75.2 0.1 3.6e-21 75.2 0.0 2.7 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus Fer4_8 PF13183.1 gi|147919469|ref|YP_686791.1| - 2.9e-09 36.8 7.7 2.9e-09 36.8 5.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919469|ref|YP_686791.1| - 1.5e-05 25.1 11.4 1.5e-05 25.1 7.9 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919469|ref|YP_686791.1| - 3.4e-05 24.0 10.5 0.054 13.8 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919469|ref|YP_686791.1| - 8.7e-05 22.8 16.0 0.0008 19.7 3.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919469|ref|YP_686791.1| - 9.1e-05 22.7 11.1 9.1e-05 22.7 7.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919469|ref|YP_686791.1| - 0.00022 20.9 12.1 0.00022 20.9 8.4 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147919469|ref|YP_686791.1| - 0.0043 16.8 17.8 0.0045 16.8 9.9 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919469|ref|YP_686791.1| - 0.0071 15.8 23.7 0.019 14.5 1.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919469|ref|YP_686791.1| - 0.093 12.6 21.1 0.11 12.5 0.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|147919469|ref|YP_686791.1| - 0.25 10.9 10.1 0.48 10.0 0.6 3.1 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|147919469|ref|YP_686791.1| - 0.48 11.1 15.8 0.11 13.2 8.1 2.1 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|147919469|ref|YP_686791.1| - 5.6 7.5 23.2 2.5 8.6 1.3 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Methyltransf_11 PF08241.7 gi|147919472|ref|YP_686788.1| - 5.7e-26 90.8 0.0 1.1e-25 89.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919472|ref|YP_686788.1| - 1.4e-23 83.1 0.1 2e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919472|ref|YP_686788.1| - 2.7e-16 60.1 0.1 4.4e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147919472|ref|YP_686788.1| - 3.2e-15 55.8 0.4 5.1e-15 55.2 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|147919472|ref|YP_686788.1| - 9.5e-15 54.6 0.0 1.3e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147919472|ref|YP_686788.1| - 4.8e-13 49.4 0.0 8.7e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147919472|ref|YP_686788.1| - 1.1e-12 48.2 0.0 2.4e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147919472|ref|YP_686788.1| - 1.7e-10 40.9 0.0 4.7e-10 39.5 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain CMAS PF02353.15 gi|147919472|ref|YP_686788.1| - 3.4e-08 32.9 0.0 1.4e-07 30.9 0.0 1.7 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|147919472|ref|YP_686788.1| - 1.1e-07 31.3 0.0 1.9e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|147919472|ref|YP_686788.1| - 1.3e-07 31.3 0.0 1.8e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|147919472|ref|YP_686788.1| - 8.6e-07 28.8 1.1 1.3e-05 24.9 0.8 2.1 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|147919472|ref|YP_686788.1| - 2.3e-06 26.5 0.0 6.2e-06 25.1 0.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1698) TehB PF03848.9 gi|147919472|ref|YP_686788.1| - 2.9e-06 26.5 0.0 3.5e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|147919472|ref|YP_686788.1| - 1.1e-05 25.1 0.0 2e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|147919472|ref|YP_686788.1| - 2.3e-05 25.1 0.0 4.6e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|147919472|ref|YP_686788.1| - 0.00012 21.4 0.2 0.00026 20.3 0.1 1.7 1 1 0 1 1 1 1 Histone methylation protein DOT1 MetW PF07021.7 gi|147919472|ref|YP_686788.1| - 0.00035 19.9 0.0 0.00053 19.4 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|147919472|ref|YP_686788.1| - 0.00045 19.3 0.0 0.00064 18.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.6 gi|147919472|ref|YP_686788.1| - 0.0006 19.2 0.0 0.00084 18.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0020 PF01170.13 gi|147919472|ref|YP_686788.1| - 0.0013 18.3 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_29 PF03141.11 gi|147919472|ref|YP_686788.1| - 0.007 14.7 0.0 0.01 14.2 0.0 1.3 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PyrI_C PF02748.10 gi|147919472|ref|YP_686788.1| - 0.02 14.3 0.1 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Methyltransf_4 PF02390.12 gi|147919472|ref|YP_686788.1| - 0.039 13.0 0.0 0.12 11.3 0.0 1.9 1 1 0 1 1 1 0 Putative methyltransferase PrmA PF06325.8 gi|147919472|ref|YP_686788.1| - 0.058 12.5 1.0 1.3 8.0 0.0 2.1 1 1 1 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) PNP_UDP_1 PF01048.15 gi|147919473|ref|YP_686787.1| - 7.1e-47 159.3 0.5 7.9e-47 159.1 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Biotin_carb_C PF02785.14 gi|147919473|ref|YP_686787.1| - 0.017 15.0 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Biotin carboxylase C-terminal domain DHODB_Fe-S_bind PF10418.4 gi|147919473|ref|YP_686787.1| - 0.68 9.4 0.0 0.68 9.4 0.0 3.4 4 0 0 4 4 4 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Pyridox_ox_2 PF12900.2 gi|147919475|ref|YP_686785.1| - 2.3e-25 89.1 0.0 2.6e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|147919475|ref|YP_686785.1| - 8.3e-11 41.7 0.0 1.1e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Beta-Casp PF10996.3 gi|147919476|ref|YP_686784.1| - 7e-34 116.4 0.0 1.6e-33 115.3 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|147919476|ref|YP_686784.1| - 1.8e-20 73.3 0.1 4.9e-20 72.0 0.0 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|147919476|ref|YP_686784.1| - 2.7e-13 49.4 0.0 7e-13 48.1 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|147919476|ref|YP_686784.1| - 4.6e-11 42.6 0.0 1.3e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|147919476|ref|YP_686784.1| - 2.1e-06 27.1 0.5 0.00033 20.1 0.1 3.3 1 1 1 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|147919476|ref|YP_686784.1| - 2.5e-06 27.3 0.0 1.4e-05 24.9 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|147919476|ref|YP_686784.1| - 0.0017 17.9 0.5 0.0046 16.5 0.2 1.9 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|147919476|ref|YP_686784.1| - 0.0033 17.0 0.0 0.0082 15.7 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|147919476|ref|YP_686784.1| - 0.065 12.8 0.0 0.23 11.1 0.0 1.9 1 0 0 1 1 1 0 KH domain Proteasome PF00227.21 gi|147919477|ref|YP_686783.1| - 3.2e-54 183.1 0.1 3.6e-54 182.9 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit NAD_binding_2 PF03446.10 gi|147919478|ref|YP_686782.1| - 1e-37 129.4 0.0 1.5e-37 128.9 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|147919478|ref|YP_686782.1| - 3.2e-13 49.5 0.0 4.1e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|147919478|ref|YP_686782.1| - 2.4e-05 23.5 0.0 3.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|147919478|ref|YP_686782.1| - 0.00015 22.0 0.0 0.00038 20.8 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|147919478|ref|YP_686782.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|147919478|ref|YP_686782.1| - 0.1 13.1 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PDH PF02153.12 gi|147919478|ref|YP_686782.1| - 0.1 11.4 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase UPF0118 PF01594.11 gi|147919479|ref|YP_686781.1| - 9.8e-32 110.2 38.5 1.3e-31 109.8 26.7 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Metallophos_2 PF12850.2 gi|147919480|ref|YP_686780.1| - 9e-18 64.5 0.0 1.9e-17 63.5 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147919480|ref|YP_686780.1| - 5.8e-13 48.6 0.0 7.3e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|147919480|ref|YP_686780.1| - 5.1e-09 35.6 0.2 3.6e-07 29.5 0.1 2.4 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily SpoU_methylase PF00588.14 gi|147919481|ref|YP_686779.1| - 2.9e-31 108.2 0.0 3.9e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|147919481|ref|YP_686779.1| - 1.5e-06 27.8 0.0 2.7e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DUF531 PF04407.7 gi|147919481|ref|YP_686779.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF531) MoaC PF01967.16 gi|147919482|ref|YP_686778.1| - 3e-52 175.8 4.4 3.5e-52 175.6 3.1 1.0 1 0 0 1 1 1 1 MoaC family Carb_kinase PF01256.12 gi|147919483|ref|YP_686777.1| - 7.4e-49 166.2 0.2 1.3e-48 165.3 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|147919483|ref|YP_686777.1| - 1.6e-43 148.2 0.4 5.6e-43 146.4 0.1 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|147919483|ref|YP_686777.1| - 4.5e-06 26.0 0.1 7e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Semialdhyde_dh PF01118.19 gi|147919483|ref|YP_686777.1| - 2.1e-05 24.7 0.0 0.02 15.1 0.0 2.7 2 1 1 3 3 3 2 Semialdehyde dehydrogenase, NAD binding domain DUF1254 PF06863.7 gi|147919484|ref|YP_686776.1| - 2.8e-48 162.9 2.1 6.6e-48 161.7 0.2 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1254) DUF1214 PF06742.6 gi|147919484|ref|YP_686776.1| - 2.6e-30 104.9 0.3 8.9e-30 103.2 0.2 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1214) DUF2785 PF10978.3 gi|147919485|ref|YP_686775.1| - 1.5e-56 190.6 0.0 2.2e-56 190.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2785) Methyltransf_26 PF13659.1 gi|147919486|ref|YP_686774.1| - 3.6e-13 49.5 0.0 6.1e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147919486|ref|YP_686774.1| - 1.5e-12 47.2 0.0 1.9e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|147919486|ref|YP_686774.1| - 7.2e-07 28.9 0.0 9.1e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|147919486|ref|YP_686774.1| - 3.4e-06 26.3 0.1 9.3e-06 24.9 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|147919486|ref|YP_686774.1| - 0.0014 18.3 0.0 0.004 16.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919486|ref|YP_686774.1| - 0.0018 18.8 0.0 0.003 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147919486|ref|YP_686774.1| - 0.0061 17.0 0.1 0.023 15.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|147919486|ref|YP_686774.1| - 0.011 15.2 0.1 0.026 14.0 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MethyltransfD12 PF02086.10 gi|147919486|ref|YP_686774.1| - 0.012 15.1 0.1 0.074 12.5 0.0 1.9 1 1 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Eco57I PF07669.6 gi|147919486|ref|YP_686774.1| - 0.014 15.7 0.0 0.024 14.9 0.0 1.4 1 0 0 1 1 1 0 Eco57I restriction-modification methylase Methyltransf_12 PF08242.7 gi|147919486|ref|YP_686774.1| - 0.034 14.6 0.1 0.14 12.6 0.0 2.1 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|147919486|ref|YP_686774.1| - 0.034 13.5 0.0 0.061 12.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase AdoHcyase_NAD PF00670.16 gi|147919486|ref|YP_686774.1| - 0.068 13.0 0.3 0.13 12.0 0.1 1.5 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MetW PF07021.7 gi|147919486|ref|YP_686774.1| - 0.075 12.3 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|147919486|ref|YP_686774.1| - 0.08 12.5 0.2 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase RrnaAD PF00398.15 gi|147919487|ref|YP_686773.1| - 4.5e-57 193.0 0.0 5.5e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|147919487|ref|YP_686773.1| - 2.7e-09 37.0 0.0 4.1e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919487|ref|YP_686773.1| - 6.5e-07 29.9 0.0 1.3e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919487|ref|YP_686773.1| - 4e-06 26.4 0.0 6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147919487|ref|YP_686773.1| - 4.2e-06 27.1 0.0 1.5e-05 25.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147919487|ref|YP_686773.1| - 6.6e-05 23.2 0.0 0.00013 22.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147919487|ref|YP_686773.1| - 0.00028 20.3 0.0 0.00044 19.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|147919487|ref|YP_686773.1| - 0.00057 19.6 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|147919487|ref|YP_686773.1| - 0.0015 17.4 0.0 0.0067 15.3 0.0 1.8 2 0 0 2 2 2 1 DREV methyltransferase Methyltransf_12 PF08242.7 gi|147919487|ref|YP_686773.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|147919487|ref|YP_686773.1| - 0.023 13.7 0.0 0.044 12.8 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_24 PF13578.1 gi|147919487|ref|YP_686773.1| - 0.032 15.0 0.0 0.061 14.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|147919487|ref|YP_686773.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF2562 PF10814.3 gi|147919487|ref|YP_686773.1| - 0.24 11.3 1.2 8.3 6.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2562) DUF655 PF04919.7 gi|147919488|ref|YP_686772.1| - 4.4e-69 231.8 1.8 4.9e-69 231.6 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|147919488|ref|YP_686772.1| - 0.00097 19.0 0.1 0.0043 16.9 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|147919488|ref|YP_686772.1| - 0.0029 17.5 0.0 0.011 15.8 0.0 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix motif MRP-63 PF14978.1 gi|147919488|ref|YP_686772.1| - 0.091 13.2 0.8 0.25 11.7 0.1 2.2 1 1 1 2 2 2 0 Mitochondrial ribosome protein 63 RNA_pol_Rpb4 PF03874.11 gi|147919489|ref|YP_686771.1| - 1.8e-16 60.2 1.4 2.1e-16 60.0 0.9 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Ribosomal_L21e PF01157.13 gi|147919490|ref|YP_686770.1| - 7.9e-29 99.3 0.7 8.8e-29 99.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|147919491|ref|YP_686769.1| - 1.3e-06 28.3 0.0 2.8e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 THUMP domain Antitoxin-MazE PF04014.13 gi|147919492|ref|YP_686768.1| - 2.6e-11 42.9 0.5 4.4e-11 42.2 0.3 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Peptidase_S24 PF00717.18 gi|147919492|ref|YP_686768.1| - 0.021 14.4 0.2 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 Peptidase S24-like UTRA PF07702.8 gi|147919492|ref|YP_686768.1| - 0.026 14.1 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 UTRA domain PIN PF01850.16 gi|147919493|ref|YP_686767.1| - 5.9e-07 29.8 0.0 8.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 PIN domain DDE_Tnp_1 PF01609.16 gi|147919494|ref|YP_685159.1| - 1.9e-16 60.2 0.0 3.2e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147919494|ref|YP_685159.1| - 2e-10 40.4 0.0 4e-10 39.4 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147919494|ref|YP_685159.1| - 3.6e-06 26.8 0.0 6.9e-06 25.8 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_assoc PF13808.1 gi|147919494|ref|YP_685159.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 DDE_Tnp_1-associated Antitoxin-MazE PF04014.13 gi|147919496|ref|YP_686764.1| - 6.9e-07 28.8 0.1 9.9e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE CdhD PF03599.11 gi|147919497|ref|YP_686763.1| - 1.8e-14 53.0 0.0 2.4e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit Fer4 PF00037.22 gi|147919498|ref|YP_686762.1| - 7.2e-11 41.2 13.4 2e-07 30.3 1.8 3.1 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919498|ref|YP_686762.1| - 4.6e-10 39.3 9.5 4.6e-10 39.3 6.6 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919498|ref|YP_686762.1| - 2.4e-09 37.3 9.3 2.4e-09 37.3 6.4 1.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919498|ref|YP_686762.1| - 4.3e-09 36.6 11.7 4.3e-09 36.6 8.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919498|ref|YP_686762.1| - 7.5e-08 31.9 18.2 5.5e-06 26.0 1.0 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147919498|ref|YP_686762.1| - 1.7e-07 31.4 9.3 4.6e-07 30.0 6.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919498|ref|YP_686762.1| - 4.6e-07 29.5 12.9 4.6e-07 29.5 9.0 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147919498|ref|YP_686762.1| - 1.2e-06 28.2 7.8 9.4e-05 22.1 0.3 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919498|ref|YP_686762.1| - 2.6e-06 27.0 11.7 0.00014 21.5 1.2 3.2 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919498|ref|YP_686762.1| - 4.5e-05 24.1 16.1 0.0053 17.4 0.2 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|147919498|ref|YP_686762.1| - 0.0002 21.4 10.7 0.0016 18.6 1.0 3.2 3 1 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|147919498|ref|YP_686762.1| - 0.00029 21.1 12.1 0.023 15.0 8.4 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|147919498|ref|YP_686762.1| - 0.0022 18.5 13.1 0.034 14.7 6.5 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|147919498|ref|YP_686762.1| - 0.0084 16.5 14.1 0.031 14.6 3.3 2.9 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147919498|ref|YP_686762.1| - 0.017 15.0 6.4 0.017 15.0 4.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919498|ref|YP_686762.1| - 0.026 15.0 5.7 0.026 15.0 3.9 3.7 4 1 0 3 3 3 0 4Fe-4S binding domain RDD PF06271.7 gi|147919499|ref|YP_686761.1| - 3.7e-25 88.3 13.4 5.4e-25 87.8 9.3 1.2 1 0 0 1 1 1 1 RDD family NfeD PF01957.13 gi|147919499|ref|YP_686761.1| - 0.15 12.1 7.8 0.26 11.4 5.4 1.4 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF975 PF06161.6 gi|147919499|ref|YP_686761.1| - 0.29 10.8 19.1 0.28 10.8 10.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF975) DUF3040 PF11239.3 gi|147919499|ref|YP_686761.1| - 0.52 10.3 8.9 1.9 8.6 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF4013 PF13197.1 gi|147919499|ref|YP_686761.1| - 0.69 9.2 27.2 2.3 7.4 18.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4013) Claudin_2 PF13903.1 gi|147919499|ref|YP_686761.1| - 3.8 7.1 10.9 0.16 11.6 3.8 1.5 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Spo7 PF03907.8 gi|147919499|ref|YP_686761.1| - 6.1 6.3 8.7 12 5.4 0.2 2.5 1 1 1 3 3 3 0 Spo7-like protein E1-E2_ATPase PF00122.15 gi|147919499|ref|YP_686761.1| - 8.4 5.3 8.2 14 4.6 5.7 1.3 1 0 0 1 1 1 0 E1-E2 ATPase DDE_Tnp_1 PF01609.16 gi|147919500|ref|YP_686760.1| - 1.4e-16 60.7 0.1 2.1e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147919500|ref|YP_686760.1| - 6.1e-13 48.4 0.1 1.8e-12 46.9 0.1 1.9 1 1 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147919500|ref|YP_686760.1| - 3.3e-05 23.6 0.0 6.6e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147919500|ref|YP_686760.1| - 0.019 14.9 0.5 0.039 13.9 0.3 1.5 1 0 0 1 1 1 0 Transposase DDE domain Methyltrn_RNA_2 PF04013.7 gi|147919501|ref|YP_686759.1| - 2.4e-65 219.8 0.0 2.7e-65 219.6 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase SRP54 PF00448.17 gi|147919502|ref|YP_686758.1| - 2.3e-68 229.5 0.9 2.3e-68 229.5 0.6 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|147919502|ref|YP_686758.1| - 2.1e-32 111.4 1.7 2.1e-32 111.4 1.2 2.3 2 0 0 2 2 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|147919502|ref|YP_686758.1| - 1.6e-14 53.7 3.1 1.8e-14 53.6 0.5 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|147919502|ref|YP_686758.1| - 9.4e-06 25.1 0.4 3.1e-05 23.4 0.1 2.0 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|147919502|ref|YP_686758.1| - 1.7e-05 24.5 0.0 4.8e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|147919502|ref|YP_686758.1| - 3.8e-05 23.1 2.6 0.00049 19.5 0.9 3.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|147919502|ref|YP_686758.1| - 8.3e-05 22.7 0.1 0.00048 20.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain 6PF2K PF01591.13 gi|147919502|ref|YP_686758.1| - 0.00026 20.1 0.0 0.00051 19.1 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.7 gi|147919502|ref|YP_686758.1| - 0.0003 19.9 0.4 0.00085 18.4 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|147919502|ref|YP_686758.1| - 0.00036 20.4 0.0 0.00074 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|147919502|ref|YP_686758.1| - 0.00057 19.4 0.1 0.00082 18.8 0.1 1.3 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|147919502|ref|YP_686758.1| - 0.001 17.8 0.3 0.016 13.9 0.1 2.4 2 0 0 2 2 2 1 ArgK protein AAA_19 PF13245.1 gi|147919502|ref|YP_686758.1| - 0.0016 18.1 0.0 0.0065 16.1 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|147919502|ref|YP_686758.1| - 0.002 18.9 0.1 0.0065 17.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147919502|ref|YP_686758.1| - 0.0029 17.6 0.0 0.0078 16.2 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain APS_kinase PF01583.15 gi|147919502|ref|YP_686758.1| - 0.0054 16.4 0.0 0.014 15.0 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase Thymidylate_kin PF02223.12 gi|147919502|ref|YP_686758.1| - 0.041 13.2 0.2 0.13 11.5 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase Ribosomal_S10 PF00338.17 gi|147919502|ref|YP_686758.1| - 0.047 13.5 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S10p/S20e AAA_18 PF13238.1 gi|147919502|ref|YP_686758.1| - 0.051 13.8 0.2 0.41 10.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|147919502|ref|YP_686758.1| - 0.054 12.7 0.6 6.2 5.9 0.0 2.6 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit KTI12 PF08433.5 gi|147919502|ref|YP_686758.1| - 0.06 12.5 0.0 0.14 11.3 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TFIIA_gamma_N PF02268.11 gi|147919502|ref|YP_686758.1| - 0.11 12.1 0.1 0.32 10.6 0.1 1.9 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain AAA_31 PF13614.1 gi|147919502|ref|YP_686758.1| - 0.11 12.4 0.0 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain HTH_5 PF01022.15 gi|147919503|ref|YP_686757.1| - 9.2e-15 54.0 0.2 1.3e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147919503|ref|YP_686757.1| - 7.3e-13 48.1 1.4 1e-12 47.6 1.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|147919503|ref|YP_686757.1| - 1.4e-05 24.5 0.1 2.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|147919503|ref|YP_686757.1| - 1.9e-05 24.1 1.1 1.9e-05 24.1 0.7 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|147919503|ref|YP_686757.1| - 2.2e-05 24.0 1.0 3.2e-05 23.5 0.7 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|147919503|ref|YP_686757.1| - 7.8e-05 21.9 0.2 0.00012 21.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|147919503|ref|YP_686757.1| - 0.00013 21.8 0.1 0.00023 21.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|147919503|ref|YP_686757.1| - 0.00049 19.7 0.3 0.00049 19.7 0.2 1.9 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|147919503|ref|YP_686757.1| - 0.00059 20.0 0.2 0.00085 19.5 0.1 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_37 PF13744.1 gi|147919503|ref|YP_686757.1| - 0.0033 17.1 0.3 0.0045 16.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|147919503|ref|YP_686757.1| - 0.0084 16.1 0.1 0.014 15.5 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|147919503|ref|YP_686757.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|147919503|ref|YP_686757.1| - 0.013 15.2 0.8 0.024 14.4 0.5 1.4 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|147919503|ref|YP_686757.1| - 0.014 15.1 0.1 0.023 14.3 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|147919503|ref|YP_686757.1| - 0.018 14.6 1.0 0.07 12.8 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.7 gi|147919503|ref|YP_686757.1| - 0.022 14.4 1.0 0.035 13.7 0.7 1.3 1 0 0 1 1 1 0 HTH domain HTH_3 PF01381.17 gi|147919503|ref|YP_686757.1| - 0.03 14.1 0.1 0.083 12.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix TFIIE_alpha PF02002.12 gi|147919503|ref|YP_686757.1| - 0.035 13.6 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HrcA_DNA-bdg PF03444.10 gi|147919503|ref|YP_686757.1| - 0.041 13.3 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_ECF PF07638.6 gi|147919503|ref|YP_686757.1| - 0.051 13.2 0.3 0.063 12.9 0.2 1.2 1 0 0 1 1 1 0 ECF sigma factor Sigma70_r4 PF04545.11 gi|147919503|ref|YP_686757.1| - 0.063 12.5 0.0 0.3 10.4 0.1 2.2 2 1 0 2 2 2 0 Sigma-70, region 4 TetR_N PF00440.18 gi|147919503|ref|YP_686757.1| - 0.081 12.5 0.4 0.38 10.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Cro PF09048.5 gi|147919503|ref|YP_686757.1| - 0.11 12.2 0.2 0.31 10.7 0.1 1.9 1 1 0 1 1 1 0 Cro E1-E2_ATPase PF00122.15 gi|147919504|ref|YP_686314.1| - 1.5e-57 194.3 0.1 3.2e-57 193.2 0.1 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147919504|ref|YP_686314.1| - 1.6e-45 156.1 3.2 3.4e-45 155.1 1.4 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147919504|ref|YP_686314.1| - 2.5e-15 57.1 0.0 4.3e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|147919504|ref|YP_686314.1| - 3.6e-09 36.6 0.2 2e-08 34.2 0.0 2.3 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|147919504|ref|YP_686314.1| - 0.0052 16.4 0.2 0.012 15.1 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Gp37 PF09646.5 gi|147919504|ref|YP_686314.1| - 0.11 11.9 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Gp37 protein Fimbrial_PilY2 PF14481.1 gi|147919504|ref|YP_686314.1| - 0.13 11.6 0.0 0.72 9.2 0.0 2.4 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 Nitroreductase PF00881.19 gi|147919505|ref|YP_686755.1| - 5.3e-41 140.1 0.0 6.5e-41 139.9 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|147919505|ref|YP_686755.1| - 5.1e-06 25.8 0.8 0.11 11.6 0.0 3.2 1 1 2 3 3 3 2 Putative TM nitroreductase Xlink PF00193.12 gi|147919505|ref|YP_686755.1| - 0.07 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Extracellular link domain MMR_HSR1 PF01926.18 gi|147919506|ref|YP_686754.1| - 2.2e-19 69.5 0.0 4.7e-19 68.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|147919506|ref|YP_686754.1| - 3.8e-16 58.9 0.1 1.1e-15 57.4 0.0 1.8 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.22 gi|147919506|ref|YP_686754.1| - 2.5e-07 30.3 0.0 5.2e-05 22.7 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|147919506|ref|YP_686754.1| - 4.7e-06 25.9 0.1 1.7e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|147919506|ref|YP_686754.1| - 1.7e-05 24.6 0.1 0.00014 21.7 0.0 2.2 1 1 1 2 2 2 1 Dynamin family DUF258 PF03193.11 gi|147919506|ref|YP_686754.1| - 0.0033 16.6 0.0 0.013 14.7 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|147919506|ref|YP_686754.1| - 0.0036 16.8 0.0 0.12 11.8 0.0 2.5 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|147919506|ref|YP_686754.1| - 0.011 16.0 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|147919506|ref|YP_686754.1| - 0.011 16.1 0.0 0.027 14.9 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_29 PF13555.1 gi|147919506|ref|YP_686754.1| - 0.015 14.8 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.14 gi|147919506|ref|YP_686754.1| - 0.031 13.7 0.7 1.9 7.8 0.0 2.7 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain GBP PF02263.14 gi|147919506|ref|YP_686754.1| - 0.056 12.4 0.2 0.9 8.5 0.0 2.1 2 0 0 2 2 2 0 Guanylate-binding protein, N-terminal domain ApbA_C PF08546.6 gi|147919508|ref|YP_686752.1| - 5.1e-38 129.8 0.1 7.3e-38 129.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|147919508|ref|YP_686752.1| - 1.6e-26 92.6 0.0 2.8e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|147919508|ref|YP_686752.1| - 8.1e-06 26.1 0.1 2.4e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|147919508|ref|YP_686752.1| - 0.00061 19.5 0.2 0.0035 17.0 0.1 2.2 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|147919508|ref|YP_686752.1| - 0.00074 19.7 0.0 0.018 15.2 0.0 2.6 2 1 1 3 3 3 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|147919508|ref|YP_686752.1| - 0.00089 19.1 0.1 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|147919508|ref|YP_686752.1| - 0.0012 18.5 0.1 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|147919508|ref|YP_686752.1| - 0.0014 17.6 1.7 0.0056 15.6 0.0 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|147919508|ref|YP_686752.1| - 0.0014 18.0 0.0 0.0028 17.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|147919508|ref|YP_686752.1| - 0.0032 17.2 0.9 0.031 14.1 0.6 2.3 1 1 1 2 2 2 1 ThiF family Pyr_redox PF00070.22 gi|147919508|ref|YP_686752.1| - 0.0057 17.0 0.1 0.029 14.7 0.0 2.2 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|147919508|ref|YP_686752.1| - 0.023 14.0 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding_2 PF13380.1 gi|147919508|ref|YP_686752.1| - 0.032 14.3 1.7 0.095 12.8 0.1 2.2 1 1 1 2 2 2 0 CoA binding domain Glyco_trans_4_4 PF13579.1 gi|147919508|ref|YP_686752.1| - 0.1 12.7 0.6 0.14 12.2 0.1 1.6 2 1 0 2 2 1 0 Glycosyl transferase 4-like domain N6_N4_Mtase PF01555.13 gi|147919509|ref|YP_686751.1| - 3.9e-40 137.7 0.0 4.9e-40 137.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|147919509|ref|YP_686751.1| - 2.7e-10 40.3 0.1 0.00079 19.4 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|147919509|ref|YP_686751.1| - 0.0016 18.0 0.1 0.19 11.3 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 CBFD_NFYB_HMF PF00808.18 gi|147919510|ref|YP_686750.1| - 1.6e-20 72.9 0.4 1.7e-20 72.7 0.3 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|147919510|ref|YP_686750.1| - 7.6e-11 41.9 0.2 7.9e-11 41.9 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 Bromo_TP PF07524.8 gi|147919510|ref|YP_686750.1| - 7.6e-06 25.5 0.0 8.2e-06 25.4 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-S PF15630.1 gi|147919510|ref|YP_686750.1| - 0.00011 22.2 0.1 0.00016 21.8 0.1 1.3 1 1 0 1 1 1 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|147919510|ref|YP_686750.1| - 0.00069 19.8 0.1 0.00073 19.7 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-T PF15511.1 gi|147919510|ref|YP_686750.1| - 0.001 18.4 0.1 0.001 18.4 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TAF PF02969.12 gi|147919510|ref|YP_686750.1| - 0.0017 18.2 0.5 0.002 18.0 0.3 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.10 gi|147919510|ref|YP_686750.1| - 0.012 15.4 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit LacI PF00356.16 gi|147919510|ref|YP_686750.1| - 0.034 13.7 0.0 0.064 12.8 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, lacI family RMMBL PF07521.7 gi|147919511|ref|YP_686749.1| - 5e-05 23.0 0.0 0.00011 21.9 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|147919511|ref|YP_686749.1| - 0.00015 21.3 1.8 0.00074 19.1 0.7 2.3 2 1 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|147919511|ref|YP_686749.1| - 0.096 12.7 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase Lactamase_B PF00753.22 gi|147919511|ref|YP_686749.1| - 0.22 11.1 2.0 14 5.2 0.5 2.4 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily TPR_11 PF13414.1 gi|147919514|ref|YP_686746.1| - 6.4e-21 73.7 4.9 4e-15 55.2 0.5 2.9 1 1 1 3 3 3 2 TPR repeat TPR_1 PF00515.23 gi|147919514|ref|YP_686746.1| - 3.9e-19 67.3 6.5 7.9e-07 28.4 0.7 4.3 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147919514|ref|YP_686746.1| - 2.1e-18 64.7 2.7 1.5e-06 27.6 0.5 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147919514|ref|YP_686746.1| - 1e-16 60.5 5.1 1.1e-07 31.6 0.1 2.8 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147919514|ref|YP_686746.1| - 8.5e-15 54.9 0.8 5.2e-09 36.5 0.1 3.0 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147919514|ref|YP_686746.1| - 2e-12 46.2 0.7 0.00092 19.2 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147919514|ref|YP_686746.1| - 9.8e-12 44.5 0.0 3.2e-06 26.8 0.0 2.3 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147919514|ref|YP_686746.1| - 1.6e-10 41.1 3.2 9.7e-05 22.6 0.2 2.7 2 1 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.1 gi|147919514|ref|YP_686746.1| - 3.6e-09 36.2 1.0 0.0033 17.2 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147919514|ref|YP_686746.1| - 4.7e-09 36.0 0.5 0.022 15.3 0.0 4.1 1 1 3 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147919514|ref|YP_686746.1| - 2.1e-08 33.3 3.9 0.0021 17.7 0.6 3.6 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147919514|ref|YP_686746.1| - 1.8e-07 30.4 0.3 0.055 13.2 0.0 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat Apc3 PF12895.2 gi|147919514|ref|YP_686746.1| - 3.3e-06 27.1 0.8 8.1e-05 22.6 0.1 2.8 2 1 1 3 3 3 1 Anaphase-promoting complex, cyclosome, subunit 3 Fis1_TPR_C PF14853.1 gi|147919514|ref|YP_686746.1| - 1.3e-05 25.0 0.9 0.51 10.2 0.0 3.8 2 1 2 4 4 4 2 Fis1 C-terminal tetratricopeptide repeat NARP1 PF12569.3 gi|147919514|ref|YP_686746.1| - 2e-05 23.5 0.2 2e-05 23.5 0.2 2.9 1 1 2 3 3 3 1 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|147919514|ref|YP_686746.1| - 7.4e-05 22.9 0.8 0.82 10.2 0.0 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|147919514|ref|YP_686746.1| - 0.0011 18.2 1.6 0.0013 18.0 0.1 1.9 2 1 1 3 3 3 2 Coatomer epsilon subunit DUF3856 PF12968.2 gi|147919514|ref|YP_686746.1| - 0.0015 18.3 0.7 0.19 11.5 0.1 2.8 1 1 1 2 2 2 1 Domain of Unknown Function (DUF3856) Not3 PF04065.10 gi|147919514|ref|YP_686746.1| - 0.012 14.8 2.1 0.014 14.6 0.8 1.5 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Alkyl_sulf_dimr PF14863.1 gi|147919514|ref|YP_686746.1| - 0.041 14.1 0.2 0.38 10.9 0.0 2.3 1 1 2 3 3 3 0 Alkyl sulfatase dimerisation TPR_15 PF13429.1 gi|147919514|ref|YP_686746.1| - 0.068 12.2 0.6 1.1 8.2 0.0 2.4 2 1 1 3 3 3 0 Tetratricopeptide repeat Phage_30_3 PF08010.6 gi|147919514|ref|YP_686746.1| - 0.13 11.6 0.1 0.29 10.6 0.0 1.6 2 0 0 2 2 2 0 Bacteriophage protein GP30.3 Herpes_LMP1 PF05297.6 gi|147919515|ref|YP_686745.1| - 0.22 10.4 5.7 0.28 10.0 3.9 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Na_H_Exchanger PF00999.16 gi|147919516|ref|YP_686744.1| - 0.0018 16.8 10.2 0.002 16.7 7.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Rubredoxin PF00301.15 gi|147919518|ref|YP_686742.1| - 1.6e-23 82.2 6.5 1.8e-23 82.1 4.5 1.0 1 0 0 1 1 1 1 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|147919518|ref|YP_686742.1| - 0.00059 19.3 1.2 0.11 12.1 0.1 2.1 2 0 0 2 2 2 2 Sec23/Sec24 zinc finger zf-RanBP PF00641.13 gi|147919518|ref|YP_686742.1| - 0.0015 17.5 6.6 0.066 12.3 0.6 2.1 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-MIZ PF02891.15 gi|147919518|ref|YP_686742.1| - 0.0046 16.4 3.8 0.095 12.2 0.2 2.1 2 0 0 2 2 2 2 MIZ/SP-RING zinc finger PHD PF00628.24 gi|147919518|ref|YP_686742.1| - 0.046 13.4 1.6 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 PHD-finger zf-C2H2_4 PF13894.1 gi|147919518|ref|YP_686742.1| - 0.049 13.9 1.5 4.3 7.8 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Elf1 PF05129.8 gi|147919518|ref|YP_686742.1| - 0.088 12.5 1.1 0.22 11.2 0.0 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DUF2296 PF10058.4 gi|147919518|ref|YP_686742.1| - 0.19 11.4 0.8 3.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) A2L_zn_ribbon PF08792.5 gi|147919518|ref|YP_686742.1| - 0.4 10.1 3.4 9.3 5.8 0.4 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|147919518|ref|YP_686742.1| - 0.49 9.7 4.0 4.1 6.7 0.4 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-met PF12874.2 gi|147919518|ref|YP_686742.1| - 0.96 9.7 7.5 1.8 8.9 0.4 2.2 2 0 0 2 2 2 0 Zinc-finger of C2H2 type Prim_Zn_Ribbon PF08273.7 gi|147919518|ref|YP_686742.1| - 4.1 7.5 5.8 9.1 6.4 0.3 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase ABC_tran PF00005.22 gi|147919520|ref|YP_686740.1| - 1.5e-31 109.5 0.0 2e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919520|ref|YP_686740.1| - 2.7e-13 50.5 0.0 3.7e-07 30.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919520|ref|YP_686740.1| - 8.4e-06 25.1 0.0 0.068 12.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|147919520|ref|YP_686740.1| - 6.7e-05 22.4 0.3 0.004 16.6 0.2 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|147919520|ref|YP_686740.1| - 0.00012 21.5 0.0 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|147919520|ref|YP_686740.1| - 0.00049 20.1 0.3 0.0007 19.6 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|147919520|ref|YP_686740.1| - 0.0014 18.7 0.1 0.0063 16.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|147919520|ref|YP_686740.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|147919520|ref|YP_686740.1| - 0.0034 18.1 0.4 0.0043 17.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|147919520|ref|YP_686740.1| - 0.0055 16.1 0.0 0.02 14.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|147919520|ref|YP_686740.1| - 0.0076 16.1 0.2 0.041 13.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|147919520|ref|YP_686740.1| - 0.021 15.1 0.2 0.089 13.1 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|147919520|ref|YP_686740.1| - 0.024 14.3 0.1 0.092 12.5 0.1 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_23 PF13476.1 gi|147919520|ref|YP_686740.1| - 0.032 14.5 0.0 0.045 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|147919520|ref|YP_686740.1| - 0.038 13.9 0.5 0.048 13.6 0.4 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|147919520|ref|YP_686740.1| - 0.054 13.2 0.3 9 5.9 0.0 2.6 3 0 0 3 3 3 0 NTPase T2SE PF00437.15 gi|147919520|ref|YP_686740.1| - 0.061 12.2 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|147919520|ref|YP_686740.1| - 0.082 12.6 0.1 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|147919520|ref|YP_686740.1| - 0.095 12.6 0.1 0.9 9.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|147919520|ref|YP_686740.1| - 0.19 10.7 0.0 3.7 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MacB_PCD PF12704.2 gi|147919521|ref|YP_686739.1| - 6.5e-27 94.6 0.5 6.5e-27 94.6 0.4 2.5 4 0 0 4 4 4 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|147919521|ref|YP_686739.1| - 8e-17 61.1 19.4 1.6e-16 60.1 11.6 2.2 2 0 0 2 2 2 1 FtsX-like permease family MotA_ExbB PF01618.11 gi|147919521|ref|YP_686739.1| - 0.014 15.0 4.1 0.014 15.0 2.8 1.8 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family Molydop_binding PF01568.16 gi|147919521|ref|YP_686739.1| - 0.025 14.3 0.2 0.047 13.5 0.1 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain UPF0182 PF03699.8 gi|147919521|ref|YP_686739.1| - 5.3 4.8 7.6 0.72 7.7 2.5 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0182) PadR PF03551.9 gi|147919522|ref|YP_686738.1| - 4.1e-15 55.2 0.2 6.6e-15 54.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|147919522|ref|YP_686738.1| - 2.2e-06 27.5 0.0 5.2e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain AphA_like PF14557.1 gi|147919522|ref|YP_686738.1| - 0.0019 17.8 0.0 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator HxlR PF01638.12 gi|147919522|ref|YP_686738.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Topoisom_bac PF01131.15 gi|147919524|ref|YP_686736.1| - 1.3e-109 366.7 0.0 1.6e-109 366.4 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|147919524|ref|YP_686736.1| - 2.2e-13 50.0 0.0 8.4e-13 48.1 0.0 2.0 2 0 0 2 2 2 1 Toprim domain zf-C4_Topoisom PF01396.14 gi|147919524|ref|YP_686736.1| - 1.2e-10 40.6 2.5 1.2e-10 40.6 1.7 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger DUF169 PF02596.10 gi|147919525|ref|YP_686735.1| - 9.4e-17 61.1 0.0 1.2e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Collagen PF01391.13 gi|147919526|ref|YP_686734.1| - 0.0006 19.2 4.9 0.0017 17.8 3.4 1.8 1 1 0 1 1 1 1 Collagen triple helix repeat (20 copies) DUF457 PF04307.9 gi|147919527|ref|YP_686733.1| - 5.8e-18 64.7 18.5 9.3e-18 64.0 12.7 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Hemerythrin PF01814.18 gi|147919528|ref|YP_686732.1| - 3.8e-14 52.9 1.7 4.3e-14 52.8 0.4 1.6 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain PQ-loop PF04193.9 gi|147919529|ref|YP_686731.1| - 1.8e-11 43.4 3.6 1.8e-11 43.4 2.5 1.4 2 0 0 2 2 2 1 PQ loop repeat MtN3_slv PF03083.11 gi|147919529|ref|YP_686731.1| - 5.7e-09 35.7 2.0 6e-09 35.6 1.4 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.6 gi|147919529|ref|YP_686731.1| - 0.0011 18.8 1.2 0.0012 18.6 0.7 1.4 1 1 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain p12I PF12233.3 gi|147919529|ref|YP_686731.1| - 0.044 14.0 1.1 0.053 13.8 0.7 1.1 1 0 0 1 1 1 0 Human adult T cell leukemia/lymphoma virus protein Herpes_LAMP2 PF06126.6 gi|147919529|ref|YP_686731.1| - 0.047 12.0 2.1 0.049 12.0 1.4 1.1 1 0 0 1 1 1 0 Herpesvirus Latent membrane protein 2 Cation_efflux PF01545.16 gi|147919531|ref|YP_686729.1| - 2.8e-64 216.9 8.7 3.1e-64 216.7 6.1 1.0 1 0 0 1 1 1 1 Cation efflux family SpoVIF PF14069.1 gi|147919531|ref|YP_686729.1| - 0.081 12.6 0.1 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Stage VI sporulation protein F DUF2149 PF09919.4 gi|147919531|ref|YP_686729.1| - 6.9 6.8 6.2 9.9 6.3 0.1 3.1 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2149) RPA_C PF08784.6 gi|147919532|ref|YP_686728.1| - 0.00042 20.6 0.0 0.00058 20.2 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal TrmB PF01978.14 gi|147919532|ref|YP_686728.1| - 0.017 14.8 0.1 0.024 14.3 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|147919532|ref|YP_686728.1| - 0.058 12.9 0.1 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_15 PF12324.3 gi|147919532|ref|YP_686728.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase DHH PF01368.15 gi|147919533|ref|YP_686727.1| - 2e-11 43.7 0.2 4e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|147919533|ref|YP_686727.1| - 5.4e-10 38.9 0.1 1.4e-09 37.6 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DnaJ_CXXCXGXG PF00684.14 gi|147919533|ref|YP_686727.1| - 5.5e-06 26.3 19.0 5.5e-06 26.3 13.1 2.7 1 1 1 2 2 2 2 DnaJ central domain S1 PF00575.18 gi|147919533|ref|YP_686727.1| - 2.2e-05 24.4 0.2 6.7e-05 22.8 0.1 1.9 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|147919533|ref|YP_686727.1| - 0.002 17.9 0.0 0.0064 16.3 0.0 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|147919533|ref|YP_686727.1| - 0.023 14.1 0.2 0.048 13.1 0.2 1.5 1 0 0 1 1 1 0 tRNA_anti-like Fibritin_C PF07921.7 gi|147919533|ref|YP_686727.1| - 0.037 13.9 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 Fibritin C-terminal region S1_2 PF13509.1 gi|147919533|ref|YP_686727.1| - 0.045 13.6 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 S1 domain DZR PF12773.2 gi|147919533|ref|YP_686727.1| - 0.92 9.3 22.8 1.7 8.5 2.4 2.9 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|147919533|ref|YP_686727.1| - 7.3 6.4 16.1 5.9 6.7 0.6 2.8 2 1 1 3 3 3 0 zinc-ribbons DNA_primase_lrg PF04104.9 gi|147919534|ref|YP_686726.1| - 3.1e-36 124.9 0.0 6.7e-36 123.8 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_C PF02747.10 gi|147919535|ref|YP_686725.1| - 1.3e-11 44.5 0.1 1.4e-10 41.1 0.0 2.5 2 1 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|147919535|ref|YP_686725.1| - 7.4e-11 41.6 0.8 5.6e-10 38.8 0.1 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.8 gi|147919535|ref|YP_686725.1| - 0.00097 18.3 0.0 0.0074 15.4 0.0 2.2 2 0 0 2 2 2 1 Rad9 DNA_pol3_beta_3 PF02768.10 gi|147919535|ref|YP_686725.1| - 0.44 10.1 3.2 4.6 6.8 0.3 2.9 2 2 0 2 2 2 0 DNA polymerase III beta subunit, C-terminal domain TFIIS_C PF01096.13 gi|147919536|ref|YP_686724.1| - 6.8e-19 67.2 18.4 1e-18 66.6 3.2 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|147919536|ref|YP_686724.1| - 3e-06 26.7 0.9 3e-06 26.7 0.6 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.1 gi|147919536|ref|YP_686724.1| - 4.6e-06 26.1 14.9 0.24 10.9 3.6 4.1 3 1 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|147919536|ref|YP_686724.1| - 2e-05 24.1 17.1 0.87 9.3 0.4 4.1 3 1 0 3 3 3 3 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|147919536|ref|YP_686724.1| - 5.3e-05 22.9 0.9 5.3e-05 22.9 0.6 3.1 2 1 1 3 3 3 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|147919536|ref|YP_686724.1| - 0.00018 21.1 11.1 0.027 14.1 1.2 2.6 2 1 1 3 3 3 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|147919536|ref|YP_686724.1| - 0.00047 19.9 11.4 0.022 14.5 1.0 2.9 2 1 0 2 2 2 2 Double zinc ribbon IBR PF01485.16 gi|147919536|ref|YP_686724.1| - 0.00072 19.3 7.7 0.048 13.5 1.4 3.1 3 0 0 3 3 3 1 IBR domain Zn-ribbon_8 PF09723.5 gi|147919536|ref|YP_686724.1| - 0.00092 19.1 13.3 0.89 9.5 0.0 4.2 4 0 0 4 4 4 1 Zinc ribbon domain DUF2387 PF09526.5 gi|147919536|ref|YP_686724.1| - 0.00093 19.0 8.8 0.03 14.2 0.4 2.7 2 1 0 2 2 2 2 Probable metal-binding protein (DUF2387) PhnA_Zn_Ribbon PF08274.7 gi|147919536|ref|YP_686724.1| - 0.0026 17.5 4.6 1.1 9.1 0.0 3.3 2 2 0 2 2 2 1 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.8 gi|147919536|ref|YP_686724.1| - 0.003 16.9 13.0 0.75 9.3 2.5 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|147919536|ref|YP_686724.1| - 0.0034 16.5 17.3 0.33 10.2 0.2 3.8 3 1 1 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147919536|ref|YP_686724.1| - 0.0079 15.6 19.7 3.7 7.1 0.9 4.2 4 0 0 4 4 4 0 zinc-ribbon domain C1_1 PF00130.17 gi|147919536|ref|YP_686724.1| - 0.017 14.8 6.9 0.44 10.3 1.3 2.4 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.1 gi|147919536|ref|YP_686724.1| - 0.02 14.0 12.6 0.24 10.6 2.4 2.7 2 2 0 2 2 2 0 Transcription factor zinc-finger Terminase_GpA PF05876.7 gi|147919536|ref|YP_686724.1| - 0.026 12.8 6.7 0.025 12.9 2.1 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Zn_ribbon_recom PF13408.1 gi|147919536|ref|YP_686724.1| - 0.028 14.6 8.1 5.3 7.3 0.3 4.0 4 0 0 4 4 4 0 Recombinase zinc beta ribbon domain Ribosomal_S27e PF01667.12 gi|147919536|ref|YP_686724.1| - 0.041 13.4 12.0 0.27 10.8 0.1 3.9 3 1 1 4 4 4 0 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|147919536|ref|YP_686724.1| - 0.06 13.6 9.8 0.28 11.5 1.0 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|147919536|ref|YP_686724.1| - 0.074 12.8 8.8 0.082 12.7 0.3 2.7 2 1 0 2 2 2 0 zinc-ribbons RRN7 PF11781.3 gi|147919536|ref|YP_686724.1| - 0.15 11.6 9.4 4.9 6.7 0.2 3.3 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Elf1 PF05129.8 gi|147919536|ref|YP_686724.1| - 0.15 11.7 8.1 1.5 8.5 0.4 2.7 2 2 0 2 2 2 0 Transcription elongation factor Elf1 like zf-DNA_Pol PF08996.5 gi|147919536|ref|YP_686724.1| - 0.17 11.2 0.2 0.17 11.2 0.2 2.3 2 1 0 3 3 2 0 DNA Polymerase alpha zinc finger Prok-RING_1 PF14446.1 gi|147919536|ref|YP_686724.1| - 0.23 11.2 8.9 4.4 7.1 0.8 3.3 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-ISL3 PF14690.1 gi|147919536|ref|YP_686724.1| - 0.25 11.4 13.7 7.7 6.6 0.1 4.4 4 1 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 A2L_zn_ribbon PF08792.5 gi|147919536|ref|YP_686724.1| - 0.33 10.4 13.3 6.8 6.2 0.0 4.2 4 0 0 4 4 4 0 A2L zinc ribbon domain PolC_DP2 PF03833.8 gi|147919536|ref|YP_686724.1| - 0.34 8.4 3.7 0.078 10.6 0.3 1.5 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 DUF3797 PF12677.2 gi|147919536|ref|YP_686724.1| - 0.38 10.4 0.2 0.38 10.4 0.1 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) Ogr_Delta PF04606.7 gi|147919536|ref|YP_686724.1| - 0.5 10.0 11.1 0.25 11.0 0.3 3.2 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|147919536|ref|YP_686724.1| - 0.86 9.6 6.0 2.4 8.2 0.0 3.4 4 0 0 4 4 3 0 zinc-finger TerY-C PF15616.1 gi|147919536|ref|YP_686724.1| - 0.87 9.5 9.1 2.5 8.0 0.8 2.4 1 1 1 2 2 2 0 TerY-C metal binding domain Rep_fac-A_C PF08646.5 gi|147919536|ref|YP_686724.1| - 0.96 9.1 5.0 0.86 9.2 0.0 2.2 1 1 1 2 2 2 0 Replication factor-A C terminal domain UPF0547 PF10571.4 gi|147919536|ref|YP_686724.1| - 0.98 9.1 15.6 10 5.8 0.4 4.1 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DUF164 PF02591.10 gi|147919536|ref|YP_686724.1| - 1 9.2 6.2 68 3.3 0.0 3.9 4 0 0 4 4 4 0 Putative zinc ribbon domain Stc1 PF12898.2 gi|147919536|ref|YP_686724.1| - 1.1 9.3 6.4 22 5.2 4.2 2.5 1 1 0 1 1 1 0 Stc1 domain PHD PF00628.24 gi|147919536|ref|YP_686724.1| - 1.5 8.5 7.7 2.2 8.0 0.7 3.1 3 0 0 3 3 3 0 PHD-finger Nudix_N_2 PF14803.1 gi|147919536|ref|YP_686724.1| - 1.6 8.4 11.1 50 3.7 0.3 4.2 4 0 0 4 4 4 0 Nudix N-terminal Rpr2 PF04032.11 gi|147919536|ref|YP_686724.1| - 1.9 8.4 9.1 12 5.8 6.3 2.3 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain HypA PF01155.14 gi|147919536|ref|YP_686724.1| - 2.4 7.9 11.6 0.84 9.3 1.5 3.0 1 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|147919536|ref|YP_686724.1| - 3.2 7.7 11.6 3.8 7.4 0.2 4.0 4 0 0 4 4 4 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|147919536|ref|YP_686724.1| - 3.2 7.1 17.9 1.6 8.1 3.0 3.7 2 2 2 4 4 4 0 TFIIB zinc-binding Mu-like_Com PF10122.4 gi|147919536|ref|YP_686724.1| - 3.2 6.8 9.6 21 4.2 0.1 3.8 4 0 0 4 4 4 0 Mu-like prophage protein Com DUF329 PF03884.9 gi|147919536|ref|YP_686724.1| - 4.2 6.9 11.7 4.3 6.9 0.1 4.0 3 1 1 4 4 4 0 Domain of unknown function (DUF329) ArfGap PF01412.13 gi|147919536|ref|YP_686724.1| - 5 6.9 6.5 1 9.1 1.0 2.2 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf Desulfoferrod_N PF06397.7 gi|147919536|ref|YP_686724.1| - 5.5 6.4 11.3 19 4.7 0.1 3.6 3 1 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Baculo_LEF5_C PF11792.3 gi|147919536|ref|YP_686724.1| - 6.2 6.3 8.9 0.85 9.0 0.1 3.1 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-B_box PF00643.19 gi|147919536|ref|YP_686724.1| - 6.3 6.7 9.9 14 5.6 0.0 3.8 4 0 0 4 4 4 0 B-box zinc finger zf-AN1 PF01428.11 gi|147919536|ref|YP_686724.1| - 7.4 6.5 9.7 52 3.8 0.1 3.4 3 1 0 3 3 3 0 AN1-like Zinc finger Zn_Tnp_IS1 PF03811.8 gi|147919536|ref|YP_686724.1| - 8 6.0 10.5 6.9 6.2 0.0 3.7 4 0 0 4 4 4 0 InsA N-terminal domain DUF35_N PF12172.3 gi|147919536|ref|YP_686724.1| - 9.1 6.3 11.4 21 5.2 0.1 3.9 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Na_Ala_symp PF01235.12 gi|147919537|ref|YP_686723.1| - 3.8e-137 457.2 31.2 8.4e-137 456.1 21.6 1.4 1 1 0 1 1 1 1 Sodium:alanine symporter family Colicin_V PF02674.11 gi|147919538|ref|YP_686722.1| - 0.18 11.6 15.5 0.72 9.6 7.6 2.2 2 0 0 2 2 2 0 Colicin V production protein DUF4199 PF13858.1 gi|147919538|ref|YP_686722.1| - 2.3 8.1 8.4 3.7 7.4 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF4199) ABC2_membrane_4 PF12730.2 gi|147919538|ref|YP_686722.1| - 6.2 5.9 16.1 4.6 6.3 0.4 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein PHP PF02811.14 gi|147919539|ref|YP_686721.1| - 5.2e-15 55.6 0.2 1.3e-14 54.3 0.1 1.7 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|147919539|ref|YP_686721.1| - 0.0052 16.2 0.1 0.028 13.9 0.1 2.1 2 0 0 2 2 2 1 PHP-associated IF3_N PF05198.11 gi|147919539|ref|YP_686721.1| - 0.042 13.7 0.0 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain CDP-OH_P_transf PF01066.16 gi|147919540|ref|YP_686720.1| - 2.6e-15 56.5 4.8 2.6e-15 56.5 3.3 2.1 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase CTP_transf_2 PF01467.21 gi|147919541|ref|YP_686719.1| - 1.2e-20 74.1 0.0 1.6e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|147919541|ref|YP_686719.1| - 0.05 13.2 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase ADH_N PF08240.7 gi|147919542|ref|YP_686718.1| - 6.7e-27 93.3 0.3 1.1e-26 92.6 0.2 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_assoc PF13823.1 gi|147919542|ref|YP_686718.1| - 3.1e-05 23.5 0.3 3.1e-05 23.5 0.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N PF00107.21 gi|147919542|ref|YP_686718.1| - 0.00024 20.6 0.0 0.00067 19.2 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|147919542|ref|YP_686718.1| - 0.048 13.6 0.0 3.9 7.4 0.0 2.2 1 1 0 1 1 1 0 NADH(P)-binding Pribosyltran PF00156.22 gi|147919543|ref|YP_686717.1| - 2.8e-24 85.2 0.7 4.3e-24 84.6 0.5 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|147919543|ref|YP_686717.1| - 1.3e-05 24.6 0.5 9.4e-05 21.8 0.4 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|147919543|ref|YP_686717.1| - 0.00038 19.7 0.4 0.00049 19.3 0.3 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.1 gi|147919543|ref|YP_686717.1| - 0.0047 16.5 0.1 0.0084 15.7 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|147919543|ref|YP_686717.1| - 0.0064 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|147919543|ref|YP_686717.1| - 0.018 14.4 0.1 0.033 13.6 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.7 gi|147919543|ref|YP_686717.1| - 0.018 14.6 0.6 0.036 13.7 0.1 1.7 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|147919543|ref|YP_686717.1| - 0.034 13.4 0.2 0.071 12.4 0.1 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2481 PF10654.4 gi|147919543|ref|YP_686717.1| - 0.036 13.7 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_28 PF13518.1 gi|147919543|ref|YP_686717.1| - 0.044 13.7 0.1 0.11 12.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|147919543|ref|YP_686717.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 MarR family PAX PF00292.13 gi|147919543|ref|YP_686717.1| - 0.064 12.9 0.0 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 'Paired box' domain HTH_10 PF04967.7 gi|147919543|ref|YP_686717.1| - 0.074 12.6 0.1 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.1 gi|147919543|ref|YP_686717.1| - 0.11 11.9 0.2 0.21 11.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|147919543|ref|YP_686717.1| - 0.12 11.6 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PRTase_3 PF15610.1 gi|147919543|ref|YP_686717.1| - 0.16 10.8 0.1 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 PRTase ComF-like PIN PF01850.16 gi|147919544|ref|YP_686716.1| - 0.00033 20.9 0.4 0.015 15.6 0.0 2.1 1 1 1 2 2 2 1 PIN domain PIN_4 PF13638.1 gi|147919544|ref|YP_686716.1| - 0.032 14.3 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 PIN domain DZR PF12773.2 gi|147919544|ref|YP_686716.1| - 0.058 13.2 1.7 0.097 12.5 1.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|147919544|ref|YP_686716.1| - 0.1 11.8 1.9 0.16 11.2 1.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Glyco_transf_28 PF03033.15 gi|147919544|ref|YP_686716.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain ADK_lid PF05191.9 gi|147919544|ref|YP_686716.1| - 1.7 8.4 4.2 27 4.5 2.9 2.2 1 1 0 1 1 1 0 Adenylate kinase, active site lid HalX PF08663.5 gi|147919545|ref|YP_686715.1| - 0.027 14.4 0.3 0.062 13.2 0.0 1.7 2 0 0 2 2 2 0 HalX domain Apolipoprotein PF01442.13 gi|147919545|ref|YP_686715.1| - 0.04 13.4 0.2 0.054 13.0 0.1 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain HSBP1 PF06825.7 gi|147919545|ref|YP_686715.1| - 0.079 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Metallophos_2 PF12850.2 gi|147919547|ref|YP_686713.1| - 2e-25 89.4 0.0 2.4e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147919547|ref|YP_686713.1| - 5.9e-09 35.6 0.2 1.3e-05 24.6 0.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase A2L_zn_ribbon PF08792.5 gi|147919548|ref|YP_686712.1| - 0.032 13.6 2.6 1.2 8.7 0.3 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain Helicase_C_2 PF13307.1 gi|147919549|ref|YP_686711.1| - 9.9e-29 100.4 0.0 3.3e-28 98.7 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|147919549|ref|YP_686711.1| - 6e-23 81.1 0.2 3.6e-22 78.6 0.2 2.0 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|147919549|ref|YP_686711.1| - 7.5e-08 32.0 0.1 0.00012 21.5 0.0 2.8 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|147919549|ref|YP_686711.1| - 1.8e-06 27.9 0.1 0.00033 20.5 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|147919549|ref|YP_686711.1| - 9.7e-05 22.0 0.0 0.0014 18.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|147919549|ref|YP_686711.1| - 0.00026 20.2 0.1 0.011 14.9 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein Zot PF05707.7 gi|147919549|ref|YP_686711.1| - 0.00065 19.2 0.1 0.15 11.4 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF2075 PF09848.4 gi|147919549|ref|YP_686711.1| - 0.0045 16.0 0.3 0.31 9.9 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) KaiC PF06745.8 gi|147919549|ref|YP_686711.1| - 0.008 15.3 0.0 0.021 13.9 0.0 1.6 1 0 0 1 1 1 1 KaiC AAA_19 PF13245.1 gi|147919549|ref|YP_686711.1| - 0.018 14.7 0.2 0.043 13.5 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|147919549|ref|YP_686711.1| - 0.056 13.6 0.2 2.9 8.1 0.1 3.0 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Ribosomal_S3Ae PF01015.13 gi|147919550|ref|YP_686710.1| - 4e-75 251.4 1.2 4.5e-75 251.2 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family LEF-9 PF05094.7 gi|147919550|ref|YP_686710.1| - 0.043 12.2 0.2 0.055 11.8 0.1 1.1 1 0 0 1 1 1 0 Late expression factor 9 (LEF-9) Ribosomal_60s PF00428.14 gi|147919550|ref|YP_686710.1| - 0.28 11.6 4.5 0.51 10.7 1.9 2.2 2 0 0 2 2 2 0 60s Acidic ribosomal protein HEAT_2 PF13646.1 gi|147919551|ref|YP_686709.1| - 8.7e-94 307.9 55.1 3.2e-21 75.4 0.6 6.3 3 3 4 7 7 7 7 HEAT repeats HEAT_PBS PF03130.11 gi|147919551|ref|YP_686709.1| - 3.9e-55 178.7 55.6 4.6e-06 26.5 0.6 12.6 13 0 0 13 13 12 11 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|147919551|ref|YP_686709.1| - 8e-49 159.3 11.6 7.9e-06 25.5 0.0 13.3 12 1 1 13 13 13 8 HEAT repeat HEAT_EZ PF13513.1 gi|147919551|ref|YP_686709.1| - 3.4e-39 132.3 45.8 5e-05 23.6 0.1 12.8 8 4 5 13 13 13 11 HEAT-like repeat Arm PF00514.18 gi|147919551|ref|YP_686709.1| - 4.4e-26 89.7 11.4 0.04 13.7 0.0 12.6 11 3 3 14 14 13 6 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|147919551|ref|YP_686709.1| - 1.4e-10 41.3 8.1 0.1 12.4 0.1 8.2 6 2 2 9 9 9 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|147919551|ref|YP_686709.1| - 8.4e-09 34.2 2.3 0.011 14.0 0.0 5.0 2 2 1 4 4 4 2 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|147919551|ref|YP_686709.1| - 1.2e-05 25.2 4.6 0.73 9.6 0.0 6.0 3 2 7 10 10 9 1 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.2 gi|147919551|ref|YP_686709.1| - 2.1e-05 24.8 0.1 63 4.0 0.0 6.3 4 2 3 8 8 7 0 Vacuolar 14 Fab1-binding region CLASP_N PF12348.3 gi|147919551|ref|YP_686709.1| - 0.00014 21.2 5.0 0.87 8.8 0.0 5.7 4 1 0 5 5 5 1 CLASP N terminal V-ATPase_H_C PF11698.3 gi|147919551|ref|YP_686709.1| - 0.0076 16.1 0.1 4.7 7.1 0.0 4.4 4 1 1 5 5 5 1 V-ATPase subunit H DUF3368 PF11848.3 gi|147919551|ref|YP_686709.1| - 0.013 15.0 0.2 1.5 8.4 0.0 4.2 3 1 2 5 5 5 0 Domain of unknown function (DUF3368) DUF1014 PF06244.7 gi|147919551|ref|YP_686709.1| - 0.02 15.1 0.2 0.076 13.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1014) Matrix PF00661.16 gi|147919551|ref|YP_686709.1| - 0.071 11.4 0.0 0.35 9.1 0.0 2.1 3 0 0 3 3 3 0 Viral matrix protein Death PF00531.17 gi|147919551|ref|YP_686709.1| - 0.15 11.8 0.8 2.5 7.9 0.0 3.5 5 0 0 5 5 5 0 Death domain RasGEF_N_2 PF14663.1 gi|147919551|ref|YP_686709.1| - 0.16 11.9 2.0 59 3.6 0.0 4.6 5 1 1 6 6 6 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Cohesin_HEAT PF12765.2 gi|147919551|ref|YP_686709.1| - 1 9.3 26.5 1.2 9.1 0.0 7.1 8 0 0 8 8 6 0 HEAT repeat associated with sister chromatid cohesion PocR PF10114.4 gi|147919552|ref|YP_686708.1| - 2.3e-35 121.2 0.0 3.6e-35 120.6 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in PocR GGDEF PF00990.16 gi|147919552|ref|YP_686708.1| - 1.8e-33 115.3 0.0 9.6e-33 113.0 0.0 2.1 2 0 0 2 2 2 1 GGDEF domain HD PF01966.17 gi|147919552|ref|YP_686708.1| - 1.8e-18 66.7 1.6 6e-18 65.0 0.7 2.2 2 0 0 2 2 2 1 HD domain HD_5 PF13487.1 gi|147919552|ref|YP_686708.1| - 4.9e-16 58.4 0.2 1e-15 57.4 0.2 1.6 1 0 0 1 1 1 1 HD domain PAS_9 PF13426.1 gi|147919552|ref|YP_686708.1| - 1.5e-11 44.5 0.0 1.1e-10 41.7 0.0 2.5 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|147919552|ref|YP_686708.1| - 1.1e-05 25.3 0.0 2.4e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|147919552|ref|YP_686708.1| - 0.0015 18.2 0.0 0.0073 16.1 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|147919552|ref|YP_686708.1| - 0.0015 18.2 0.0 0.0044 16.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold HEAT_2 PF13646.1 gi|147919553|ref|YP_686707.1| - 7.2e-82 269.7 35.2 3.8e-19 68.7 1.5 5.3 2 2 4 6 6 6 6 HEAT repeats HEAT_PBS PF03130.11 gi|147919553|ref|YP_686707.1| - 3.1e-44 144.9 41.3 1.7e-06 27.9 0.5 10.6 11 0 0 11 11 11 9 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|147919553|ref|YP_686707.1| - 9.2e-30 100.0 9.1 0.00037 20.3 0.0 9.9 11 0 0 11 11 11 8 HEAT repeat Arm PF00514.18 gi|147919553|ref|YP_686707.1| - 5.1e-25 86.3 8.8 0.016 15.0 0.0 9.5 6 3 4 10 10 10 8 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|147919553|ref|YP_686707.1| - 5.1e-23 80.9 30.6 3.6e-06 27.2 0.5 9.2 7 3 3 10 10 10 9 HEAT-like repeat Cnd1 PF12717.2 gi|147919553|ref|YP_686707.1| - 0.00015 21.6 0.0 44 3.8 0.0 6.0 3 2 2 5 5 5 0 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|147919553|ref|YP_686707.1| - 0.00028 19.3 0.0 0.24 9.6 0.0 3.7 2 1 0 3 3 3 1 Adaptin N terminal region Aconitase_B_N PF11791.3 gi|147919553|ref|YP_686707.1| - 0.00051 19.8 0.1 14 5.4 0.0 4.5 4 1 1 5 5 5 0 Aconitate B N-terminal domain Vac14_Fab1_bd PF12755.2 gi|147919553|ref|YP_686707.1| - 0.0011 19.3 0.0 46 4.4 0.0 5.7 3 2 3 6 6 6 0 Vacuolar 14 Fab1-binding region DUF4042 PF13251.1 gi|147919553|ref|YP_686707.1| - 0.037 13.4 1.5 28 4.0 0.0 4.3 3 2 3 6 6 6 0 Domain of unknown function (DUF4042) CLASP_N PF12348.3 gi|147919553|ref|YP_686707.1| - 0.52 9.6 5.2 17 4.6 0.1 4.2 3 2 1 4 4 4 0 CLASP N terminal Cohesin_HEAT PF12765.2 gi|147919553|ref|YP_686707.1| - 5.4 7.0 17.2 7.9 6.5 0.1 5.6 6 0 0 6 6 5 0 HEAT repeat associated with sister chromatid cohesion SLA_LP_auto_ag PF05889.8 gi|147919554|ref|YP_686706.1| - 1.2e-47 162.2 0.0 8.3e-47 159.4 0.0 1.9 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Aminotran_5 PF00266.14 gi|147919554|ref|YP_686706.1| - 5.1e-16 58.3 0.0 6.6e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|147919554|ref|YP_686706.1| - 8.6e-10 38.1 0.0 1e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|147919554|ref|YP_686706.1| - 2.2e-06 26.9 0.2 6.2e-06 25.4 0.1 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|147919554|ref|YP_686706.1| - 1.8e-05 23.5 0.0 4.9e-05 22.0 0.0 1.6 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain Arginase PF00491.16 gi|147919555|ref|YP_686705.1| - 1.4e-35 122.9 0.0 1.6e-35 122.7 0.0 1.0 1 0 0 1 1 1 1 Arginase family ACT PF01842.20 gi|147919556|ref|YP_686704.1| - 4.3e-09 35.6 0.2 1.3e-07 30.9 0.0 2.5 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|147919556|ref|YP_686704.1| - 0.00029 21.1 0.1 0.00071 19.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|147919556|ref|YP_686704.1| - 0.023 14.4 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 ACT domain Peripla_BP_1 PF00532.16 gi|147919556|ref|YP_686704.1| - 0.036 13.2 0.2 0.057 12.6 0.1 1.4 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family IF-2B PF01008.12 gi|147919557|ref|YP_686703.1| - 1.9e-85 286.2 0.0 2.3e-85 286.0 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Lactamase_B PF00753.22 gi|147919558|ref|YP_686702.1| - 9e-23 80.9 0.0 1.3e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|147919558|ref|YP_686702.1| - 8.5e-07 29.0 0.0 1.7e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|147919558|ref|YP_686702.1| - 8e-05 22.6 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|147919558|ref|YP_686702.1| - 0.0014 18.1 0.3 0.0069 15.9 0.2 2.0 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Lactamase_B_3 PF13483.1 gi|147919558|ref|YP_686702.1| - 0.019 14.7 0.0 0.035 13.8 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain UPF0261 PF06792.6 gi|147919558|ref|YP_686702.1| - 0.023 13.1 0.0 0.034 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0261) IF-2 PF11987.3 gi|147919558|ref|YP_686702.1| - 0.045 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Translation-initiation factor 2 DUF3160 PF11369.3 gi|147919559|ref|YP_686701.1| - 5.7e-243 807.8 0.1 6.5e-243 807.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3160) TAT_signal PF10518.4 gi|147919559|ref|YP_686701.1| - 0.00068 19.4 2.2 0.0018 18.1 1.5 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Tropomyosin_1 PF12718.2 gi|147919560|ref|YP_686700.1| - 0.044 13.6 9.1 0.6 9.9 3.2 2.3 1 1 1 2 2 2 0 Tropomyosin like Prominin PF05478.6 gi|147919560|ref|YP_686700.1| - 0.077 10.5 0.8 0.096 10.2 0.5 1.0 1 0 0 1 1 1 0 Prominin DUF641 PF04859.7 gi|147919560|ref|YP_686700.1| - 0.12 12.1 5.4 0.23 11.1 0.4 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Pinin_SDK_N PF04697.8 gi|147919560|ref|YP_686700.1| - 0.12 12.3 0.5 0.21 11.6 0.4 1.3 1 0 0 1 1 1 0 pinin/SDK conserved region DUF2802 PF10975.3 gi|147919560|ref|YP_686700.1| - 0.17 11.6 1.4 0.81 9.4 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) DUF3782 PF12644.2 gi|147919560|ref|YP_686700.1| - 0.18 11.6 1.3 0.52 10.1 0.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) APG6 PF04111.7 gi|147919560|ref|YP_686700.1| - 0.38 9.7 5.9 0.56 9.1 4.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|147919560|ref|YP_686700.1| - 0.54 8.8 5.3 0.23 10.0 2.2 1.4 2 0 0 2 2 2 0 Spc7 kinetochore protein SlyX PF04102.7 gi|147919560|ref|YP_686700.1| - 0.68 10.3 5.4 7.7 6.9 0.1 2.5 1 1 1 2 2 2 0 SlyX TMF_DNA_bd PF12329.3 gi|147919560|ref|YP_686700.1| - 0.71 9.7 14.1 0.084 12.6 6.3 1.9 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|147919560|ref|YP_686700.1| - 0.97 8.9 8.3 2.3 7.8 5.8 1.5 1 1 0 1 1 1 0 IncA protein Shugoshin_N PF07558.6 gi|147919560|ref|YP_686700.1| - 1.7 8.3 5.7 4.6 7.0 0.1 2.7 3 0 0 3 3 3 0 Shugoshin N-terminal coiled-coil region TMF_TATA_bd PF12325.3 gi|147919560|ref|YP_686700.1| - 2 8.1 11.9 2.8 7.7 2.2 2.3 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding TBCA PF02970.11 gi|147919560|ref|YP_686700.1| - 2.6 8.2 7.5 0.63 10.1 3.1 1.5 2 0 0 2 2 2 0 Tubulin binding cofactor A HR1 PF02185.11 gi|147919560|ref|YP_686700.1| - 3.2 7.5 8.3 2.1 8.1 0.9 2.7 2 1 1 3 3 3 0 Hr1 repeat SMC_N PF02463.14 gi|147919561|ref|YP_686699.1| - 6.8e-74 247.7 0.0 1.2e-73 247.0 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|147919561|ref|YP_686699.1| - 1.8e-35 121.4 0.1 1.5e-34 118.5 0.0 2.7 3 0 0 3 3 3 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|147919561|ref|YP_686699.1| - 2.1e-18 67.3 2.4 2.1e-18 67.3 1.7 5.5 2 2 2 4 4 4 1 AAA domain AAA_21 PF13304.1 gi|147919561|ref|YP_686699.1| - 1.4e-13 51.4 4.2 7.1e-06 26.1 1.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|147919561|ref|YP_686699.1| - 1.7e-06 27.4 0.0 3.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|147919561|ref|YP_686699.1| - 2.2e-06 26.9 25.7 0.0027 16.8 8.8 4.7 3 2 1 4 4 4 2 AAA ATPase domain AAA_13 PF13166.1 gi|147919561|ref|YP_686699.1| - 6.4e-06 24.9 14.3 6.4e-06 24.9 9.9 6.1 3 2 2 6 6 6 4 AAA domain Reo_sigmaC PF04582.7 gi|147919561|ref|YP_686699.1| - 0.00073 18.8 20.8 0.091 11.9 0.1 4.6 2 2 0 4 4 4 2 Reovirus sigma C capsid protein IncA PF04156.9 gi|147919561|ref|YP_686699.1| - 0.66 9.5 90.3 1.1 8.8 5.8 7.1 4 2 3 7 7 7 0 IncA protein DUF869 PF05911.6 gi|147919561|ref|YP_686699.1| - 2.7 6.1 71.0 0.15 10.2 6.7 4.8 2 2 2 4 4 4 0 Plant protein of unknown function (DUF869) ScpA_ScpB PF02616.9 gi|147919562|ref|YP_686698.1| - 1.2e-32 113.4 5.6 2.8e-32 112.2 3.9 1.5 1 1 0 1 1 1 1 ScpA/B protein Rad21_Rec8 PF04824.11 gi|147919562|ref|YP_686698.1| - 0.002 17.2 0.2 0.0057 15.8 0.0 1.8 2 0 0 2 2 2 1 Conserved region of Rad21 / Rec8 like protein Methyltransf_31 PF13847.1 gi|147919562|ref|YP_686698.1| - 0.08 12.5 0.1 0.2 11.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain SRP1_TIP1 PF00660.12 gi|147919562|ref|YP_686698.1| - 0.13 12.1 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Seripauperin and TIP1 family IL13 PF03487.8 gi|147919562|ref|YP_686698.1| - 0.14 11.9 0.6 0.94 9.2 0.0 2.3 2 0 0 2 2 2 0 Interleukin-13 GrpE PF01025.14 gi|147919562|ref|YP_686698.1| - 0.37 10.3 3.0 0.43 10.1 0.3 1.9 2 0 0 2 2 2 0 GrpE DUF387 PF04079.11 gi|147919563|ref|YP_686697.1| - 1.6e-38 131.5 0.0 2.1e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_20 PF12840.2 gi|147919563|ref|YP_686697.1| - 0.0003 20.5 0.0 0.0011 18.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_15 PF12324.3 gi|147919563|ref|YP_686697.1| - 0.00076 19.0 0.0 2.2 7.9 0.0 2.7 3 0 0 3 3 3 2 Helix-turn-helix domain of alkylmercury lyase TrmB PF01978.14 gi|147919563|ref|YP_686697.1| - 0.0085 15.7 0.0 0.025 14.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|147919563|ref|YP_686697.1| - 0.019 14.6 0.2 15 5.3 0.0 3.4 3 1 0 3 3 3 0 MarR family AdoMet_Synthase PF01941.14 gi|147919564|ref|YP_686696.1| - 4.6e-130 433.6 0.1 5.5e-130 433.4 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|147919564|ref|YP_686696.1| - 0.0015 18.6 0.0 0.0059 16.8 0.0 1.9 1 0 0 1 1 1 1 S-adenosylmethionine synthetase, N-terminal domain Radical_SAM PF04055.16 gi|147919565|ref|YP_686695.1| - 2.2e-19 70.2 0.2 4.9e-19 69.1 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147919565|ref|YP_686695.1| - 4.2e-06 26.9 0.0 9.2e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|147919565|ref|YP_686695.1| - 0.00064 18.8 2.4 0.0013 17.8 0.1 2.7 2 1 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|147919565|ref|YP_686695.1| - 0.027 14.2 0.1 0.027 14.2 0.1 3.2 3 0 0 3 3 3 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|147919565|ref|YP_686695.1| - 0.047 13.1 7.6 0.62 9.6 0.0 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|147919565|ref|YP_686695.1| - 0.36 10.7 5.2 11 6.0 0.6 3.6 2 2 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-dskA_traR PF01258.12 gi|147919565|ref|YP_686695.1| - 0.69 9.7 10.5 0.44 10.3 0.2 3.6 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-FPG_IleRS PF06827.9 gi|147919565|ref|YP_686695.1| - 1.4 8.6 12.4 0.28 10.8 0.2 3.9 4 0 0 4 4 4 0 Zinc finger found in FPG and IleRS CarboxypepD_reg PF13620.1 gi|147919566|ref|YP_686694.1| - 1e-18 67.1 10.7 1.7e-07 31.1 0.6 4.9 4 1 1 5 5 5 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919566|ref|YP_686694.1| - 1.3e-07 31.5 6.0 0.0032 17.4 0.2 4.3 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) Dioxygenase_C PF00775.16 gi|147919566|ref|YP_686694.1| - 3.8e-07 29.5 0.3 0.015 14.5 0.0 4.0 3 1 0 3 3 3 2 Dioxygenase Big_1 PF02369.11 gi|147919566|ref|YP_686694.1| - 9.9e-05 22.1 0.3 0.018 14.9 0.0 3.0 2 2 0 2 2 2 1 Bacterial Ig-like domain (group 1) PEGA PF08308.6 gi|147919566|ref|YP_686694.1| - 0.0001 21.9 0.1 0.00026 20.7 0.0 1.6 1 0 0 1 1 1 1 PEGA domain MG1 PF11974.3 gi|147919566|ref|YP_686694.1| - 0.00055 20.4 0.6 1.4 9.4 0.0 3.0 3 0 0 3 3 3 2 Alpha-2-macroglobulin MG1 domain YtkA PF13115.1 gi|147919566|ref|YP_686694.1| - 0.0036 17.6 0.1 0.13 12.5 0.0 2.8 2 0 0 2 2 2 1 YtkA-like DUF1533 PF07550.6 gi|147919566|ref|YP_686694.1| - 0.0038 17.1 0.0 0.012 15.5 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1533) DUF1416 PF07210.7 gi|147919566|ref|YP_686694.1| - 0.01 15.4 0.4 4 7.1 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1416) Cna_B PF05738.8 gi|147919566|ref|YP_686694.1| - 0.32 10.7 11.7 1.9 8.3 0.7 3.8 3 1 1 4 4 4 0 Cna protein B-type domain Trp_oprn_chp PF09534.5 gi|147919566|ref|YP_686694.1| - 2.1 7.8 6.4 5.9 6.4 3.3 2.1 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) MARCKS PF02063.12 gi|147919566|ref|YP_686694.1| - 6.8 6.4 18.2 10 5.8 12.6 1.1 1 0 0 1 1 1 0 MARCKS family MreB_Mbl PF06723.8 gi|147919567|ref|YP_686693.1| - 1e-08 34.1 0.0 1.3e-08 33.8 0.0 1.1 1 0 0 1 1 1 1 MreB/Mbl protein Actin PF00022.14 gi|147919567|ref|YP_686693.1| - 0.0026 16.2 0.0 0.0044 15.5 0.0 1.4 1 0 0 1 1 1 1 Actin BcrAD_BadFG PF01869.15 gi|147919567|ref|YP_686693.1| - 0.0048 16.2 0.0 0.018 14.3 0.0 1.8 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family PilM_2 PF11104.3 gi|147919567|ref|YP_686693.1| - 0.0069 15.3 0.0 0.021 13.7 0.0 1.7 1 1 0 1 1 1 1 Type IV pilus assembly protein PilM; FtsA PF14450.1 gi|147919567|ref|YP_686693.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Cell division protein FtsA Arc_PepC_II PF06847.6 gi|147919568|ref|YP_686692.1| - 1.5e-26 92.6 0.1 2.4e-26 91.9 0.1 1.3 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|147919568|ref|YP_686692.1| - 2.5e-06 27.6 13.1 3.8e-06 27.0 7.1 2.2 1 1 1 2 2 2 1 Type IV leader peptidase family AAA PF00004.24 gi|147919569|ref|YP_686691.1| - 2.4e-38 131.3 0.0 3e-37 127.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|147919569|ref|YP_686691.1| - 2.5e-06 28.2 0.1 1.5e-05 25.7 0.0 2.3 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|147919569|ref|YP_686691.1| - 5.1e-06 26.2 0.1 2.4e-05 24.0 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|147919569|ref|YP_686691.1| - 2.7e-05 24.3 1.0 0.014 15.4 0.3 3.1 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|147919569|ref|YP_686691.1| - 0.00016 21.7 1.2 0.027 14.4 0.0 3.2 2 1 2 4 4 4 1 AAA ATPase domain AAA_25 PF13481.1 gi|147919569|ref|YP_686691.1| - 0.0011 18.3 0.1 0.027 13.8 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|147919569|ref|YP_686691.1| - 0.0016 18.3 0.0 0.004 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|147919569|ref|YP_686691.1| - 0.0026 17.6 0.0 0.0083 16.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_18 PF13238.1 gi|147919569|ref|YP_686691.1| - 0.0032 17.7 0.0 0.0093 16.2 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|147919569|ref|YP_686691.1| - 0.0036 17.2 0.0 0.0097 15.8 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|147919569|ref|YP_686691.1| - 0.0048 16.6 0.3 0.016 14.9 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain DUF815 PF05673.8 gi|147919569|ref|YP_686691.1| - 0.0051 15.7 0.4 0.01 14.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RuvB_N PF05496.7 gi|147919569|ref|YP_686691.1| - 0.0053 15.8 0.0 0.01 14.9 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|147919569|ref|YP_686691.1| - 0.012 15.5 0.0 0.03 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|147919569|ref|YP_686691.1| - 0.015 14.0 0.0 0.027 13.2 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|147919569|ref|YP_686691.1| - 0.022 14.6 0.0 0.063 13.2 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase ResIII PF04851.10 gi|147919569|ref|YP_686691.1| - 0.025 14.4 0.0 0.06 13.1 0.0 1.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.16 gi|147919569|ref|YP_686691.1| - 0.03 13.4 0.0 0.06 12.5 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SKI PF01202.17 gi|147919569|ref|YP_686691.1| - 0.055 13.3 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase IstB_IS21 PF01695.12 gi|147919569|ref|YP_686691.1| - 0.056 12.8 0.1 0.15 11.4 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|147919569|ref|YP_686691.1| - 0.069 12.2 0.1 0.19 10.8 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_11 PF13086.1 gi|147919569|ref|YP_686691.1| - 0.076 12.5 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain HATPase_c_2 PF13581.1 gi|147919569|ref|YP_686691.1| - 0.12 12.1 0.1 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Lactamase_B_2 PF12706.2 gi|147919570|ref|YP_686690.1| - 1.8e-23 83.1 0.6 2.3e-23 82.7 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147919570|ref|YP_686690.1| - 6.2e-15 55.3 0.2 1.3e-14 54.2 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|147919570|ref|YP_686690.1| - 1.4e-07 31.3 0.1 2.4e-07 30.6 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_24 PF13412.1 gi|147919571|ref|YP_686689.1| - 1.4e-11 43.5 1.1 4.3e-11 42.0 0.7 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|147919571|ref|YP_686689.1| - 4.6e-10 38.8 0.6 1.5e-09 37.2 0.4 1.9 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|147919571|ref|YP_686689.1| - 6.3e-09 35.4 0.0 1.3e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_DeoR PF08220.7 gi|147919571|ref|YP_686689.1| - 7e-05 22.2 0.2 0.00014 21.2 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|147919571|ref|YP_686689.1| - 9.2e-05 22.0 0.3 0.00023 20.7 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|147919571|ref|YP_686689.1| - 0.0002 21.0 0.0 0.00039 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|147919571|ref|YP_686689.1| - 0.00043 19.9 0.1 0.0038 16.9 0.0 2.4 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|147919571|ref|YP_686689.1| - 0.002 17.8 0.0 0.0072 16.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|147919571|ref|YP_686689.1| - 0.0074 15.9 0.0 0.034 13.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|147919571|ref|YP_686689.1| - 0.021 14.7 0.1 0.076 13.0 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|147919571|ref|YP_686689.1| - 0.025 14.2 0.0 0.065 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|147919571|ref|YP_686689.1| - 0.034 13.8 0.0 0.088 12.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Asp_Glu_race PF01177.17 gi|147919571|ref|YP_686689.1| - 0.042 13.7 0.1 0.052 13.4 0.1 1.1 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase Phage_terminase PF10668.4 gi|147919571|ref|YP_686689.1| - 0.073 12.8 0.0 0.72 9.6 0.0 2.4 2 0 0 2 2 2 0 Phage terminase small subunit Thioredoxin_6 PF13848.1 gi|147919571|ref|YP_686689.1| - 0.095 12.4 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Tn7_Tnp_TnsA_C PF08721.6 gi|147919571|ref|YP_686689.1| - 0.1 12.6 0.3 6.2 6.9 0.0 2.5 3 0 0 3 3 3 0 TnsA endonuclease C terminal Fe_dep_repress PF01325.14 gi|147919571|ref|YP_686689.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|147919571|ref|YP_686689.1| - 0.14 11.8 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_Tnp_ISL3 PF13542.1 gi|147919571|ref|YP_686689.1| - 0.15 11.3 0.0 0.3 10.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|147919571|ref|YP_686689.1| - 0.21 11.1 2.1 0.34 10.4 0.1 2.4 3 0 0 3 3 2 0 Helix-turn-helix domain DUF424 PF04242.8 gi|147919572|ref|YP_686688.1| - 4.5e-32 109.9 0.3 5e-32 109.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) eIF-5_eIF-2B PF01873.12 gi|147919573|ref|YP_686687.1| - 3.6e-36 123.5 0.0 4.3e-36 123.3 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DUF2318 PF10080.4 gi|147919573|ref|YP_686687.1| - 0.056 13.2 0.2 0.078 12.7 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Trm112p PF03966.11 gi|147919573|ref|YP_686687.1| - 0.056 13.8 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 Trm112p-like protein TF_Zn_Ribbon PF08271.7 gi|147919573|ref|YP_686687.1| - 0.069 12.4 1.1 0.12 11.6 0.8 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-CHY PF05495.7 gi|147919573|ref|YP_686687.1| - 0.07 13.2 0.6 0.1 12.7 0.4 1.3 1 0 0 1 1 1 0 CHY zinc finger GATA PF00320.22 gi|147919573|ref|YP_686687.1| - 0.085 12.2 0.4 0.17 11.2 0.3 1.5 1 0 0 1 1 1 0 GATA zinc finger Elf1 PF05129.8 gi|147919573|ref|YP_686687.1| - 0.13 12.0 1.2 0.28 10.9 0.9 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like MCM PF00493.18 gi|147919574|ref|YP_686686.1| - 6.4e-128 426.1 0.1 3.4e-65 220.0 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family MCM_N PF14551.1 gi|147919574|ref|YP_686686.1| - 2.1e-13 50.8 0.1 7.2e-13 49.0 0.1 2.0 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.9 gi|147919574|ref|YP_686686.1| - 0.00029 20.5 0.0 0.00067 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Intein_splicing PF14890.1 gi|147919574|ref|YP_686686.1| - 0.016 14.0 0.2 0.11 11.3 0.1 2.2 2 0 0 2 2 2 0 Intein splicing domain Sigma54_activat PF00158.21 gi|147919574|ref|YP_686686.1| - 0.034 13.6 0.0 0.15 11.5 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|147919574|ref|YP_686686.1| - 0.037 13.1 0.1 4.7 6.2 0.0 2.7 2 1 1 3 3 3 0 Magnesium chelatase, subunit ChlI ABC2_membrane_2 PF12679.2 gi|147919575|ref|YP_686685.1| - 3.3e-21 75.3 24.4 4.2e-21 75.0 16.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147919575|ref|YP_686685.1| - 2.6e-13 49.6 24.9 3.4e-13 49.2 17.3 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147919575|ref|YP_686685.1| - 1.6e-09 37.3 23.7 1.6e-09 37.3 16.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147919575|ref|YP_686685.1| - 2.5e-07 30.2 16.5 2.5e-07 30.2 11.4 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|147919575|ref|YP_686685.1| - 2e-05 23.8 27.5 4.7e-05 22.6 17.0 2.4 1 1 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.22 gi|147919576|ref|YP_686684.1| - 1.8e-25 89.8 0.0 3.6e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919576|ref|YP_686684.1| - 9.4e-17 61.8 0.0 1.9e-14 54.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|147919576|ref|YP_686684.1| - 0.0005 19.2 0.3 0.026 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|147919576|ref|YP_686684.1| - 0.0029 17.9 0.8 0.0046 17.3 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|147919576|ref|YP_686684.1| - 0.0071 15.8 0.8 0.88 8.9 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|147919576|ref|YP_686684.1| - 0.012 15.1 0.1 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|147919576|ref|YP_686684.1| - 0.015 15.2 0.0 0.036 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.14 gi|147919576|ref|YP_686684.1| - 0.064 12.4 0.4 6.9 5.8 0.1 2.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|147919576|ref|YP_686684.1| - 0.098 11.8 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF4162 PF13732.1 gi|147919576|ref|YP_686684.1| - 0.11 13.0 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Abhydrolase_6 PF12697.2 gi|147919577|ref|YP_686683.1| - 1.9e-45 155.4 0.0 2.3e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|147919577|ref|YP_686683.1| - 5.7e-25 88.2 0.0 2.3e-23 82.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|147919577|ref|YP_686683.1| - 3.3e-19 69.0 0.1 1.4e-18 67.0 0.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|147919577|ref|YP_686683.1| - 1.4e-06 27.0 0.0 2.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|147919577|ref|YP_686683.1| - 6.1e-05 22.7 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|147919577|ref|YP_686683.1| - 0.0059 16.4 0.0 0.024 14.5 0.0 1.9 2 0 0 2 2 2 1 TAP-like protein BAAT_C PF08840.6 gi|147919577|ref|YP_686683.1| - 0.11 12.1 0.0 0.74 9.4 0.0 1.9 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Regulator_TrmB PF11495.3 gi|147919578|ref|YP_686682.1| - 0.00015 20.8 0.0 0.00019 20.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB MFS_1 PF07690.11 gi|147919579|ref|YP_686681.1| - 1.2e-60 205.1 55.0 1.7e-38 132.2 14.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|147919579|ref|YP_686681.1| - 4.8e-10 38.1 26.0 1.3e-09 36.7 18.0 1.6 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|147919579|ref|YP_686681.1| - 7e-10 37.8 35.4 2.4e-06 26.2 9.7 2.5 1 1 1 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|147919579|ref|YP_686681.1| - 3.8e-08 32.3 39.2 2.3e-07 29.7 9.3 3.7 1 1 2 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|147919579|ref|YP_686681.1| - 5.5e-06 26.0 4.1 0.00058 19.5 0.1 3.9 3 0 0 3 3 3 1 MFS_1 like family LacY_symp PF01306.14 gi|147919579|ref|YP_686681.1| - 0.00024 19.7 26.0 0.00067 18.3 6.3 2.2 1 1 0 2 2 2 2 LacY proton/sugar symporter UNC-93 PF05978.11 gi|147919579|ref|YP_686681.1| - 0.00046 19.7 1.3 0.00046 19.7 0.9 2.2 2 0 0 2 2 2 1 Ion channel regulatory protein UNC-93 Folate_carrier PF01770.13 gi|147919579|ref|YP_686681.1| - 4.6 5.6 10.9 0.016 13.7 0.6 1.9 2 1 0 2 2 2 0 Reduced folate carrier PfkB PF00294.19 gi|147919580|ref|YP_686680.1| - 1.6e-34 119.4 0.6 2.3e-34 118.9 0.4 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CarboxypepD_reg PF13620.1 gi|147919581|ref|YP_686679.1| - 2.2e-14 53.2 1.1 2.2e-14 53.2 0.7 3.0 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.1 gi|147919581|ref|YP_686679.1| - 0.0012 18.8 1.4 0.0023 18.0 0.2 2.0 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF4480 PF13715.1 gi|147919581|ref|YP_686679.1| - 0.0081 16.1 0.0 0.0081 16.1 0.0 2.4 3 1 0 3 3 3 1 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|147919581|ref|YP_686679.1| - 0.015 15.0 0.1 0.015 15.0 0.1 2.4 2 1 1 3 3 3 0 Prophage tail fibre N-terminal DUF2012 PF09430.5 gi|147919581|ref|YP_686679.1| - 0.031 14.1 0.1 0.078 12.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2012) Cna_B PF05738.8 gi|147919581|ref|YP_686679.1| - 0.038 13.7 0.0 0.038 13.7 0.0 2.5 3 0 0 3 3 3 0 Cna protein B-type domain DUF2606 PF10794.4 gi|147919581|ref|YP_686679.1| - 0.055 12.8 0.0 0.091 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2606) Neisseria_TspB PF05616.8 gi|147919581|ref|YP_686679.1| - 0.2 9.9 7.5 0.29 9.4 5.2 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Na_Ca_ex PF01699.19 gi|147919582|ref|YP_686678.1| - 1.3e-49 167.4 32.9 4.8e-26 91.0 8.3 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein D-aminoacyl_C PF07908.7 gi|147919582|ref|YP_686678.1| - 0.014 14.7 0.0 0.032 13.5 0.0 1.6 1 0 0 1 1 1 0 D-aminoacylase, C-terminal region APH PF01636.18 gi|147919583|ref|YP_686677.1| - 5.6e-10 39.3 0.9 5.1e-05 23.1 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|147919583|ref|YP_686677.1| - 2e-08 33.7 0.0 4.5e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|147919583|ref|YP_686677.1| - 4.4e-05 22.6 0.0 0.0011 18.0 0.0 2.1 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|147919583|ref|YP_686677.1| - 0.00039 19.6 0.0 0.00054 19.1 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|147919583|ref|YP_686677.1| - 0.01 14.9 0.0 0.019 14.0 0.0 1.4 1 1 0 1 1 1 0 Protein tyrosine kinase WaaY PF06176.6 gi|147919583|ref|YP_686677.1| - 0.011 15.0 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Peptidase_M22 PF00814.20 gi|147919584|ref|YP_686676.1| - 2.8e-80 269.6 0.1 3.2e-80 269.4 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family DUF1778 PF08681.6 gi|147919584|ref|YP_686676.1| - 0.021 14.6 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) CmcH_NodU PF02543.10 gi|147919584|ref|YP_686676.1| - 0.099 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Carbamoyltransferase DUF2924 PF11149.3 gi|147919584|ref|YP_686676.1| - 0.14 12.1 0.0 0.42 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) Tic20 PF09685.5 gi|147919585|ref|YP_686675.1| - 1.8e-06 27.9 5.9 8.2e-05 22.5 4.1 2.0 1 1 0 1 1 1 1 Tic20-like protein Peptidase_M50B PF13398.1 gi|147919585|ref|YP_686675.1| - 0.0051 16.2 5.5 0.0058 16.0 3.8 1.1 1 0 0 1 1 1 1 Peptidase M50B-like Yip1 PF04893.12 gi|147919585|ref|YP_686675.1| - 0.022 14.2 5.2 0.03 13.8 3.6 1.2 1 0 0 1 1 1 0 Yip1 domain DUF131 PF01998.12 gi|147919585|ref|YP_686675.1| - 0.45 9.9 3.1 1.4 8.3 2.2 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF131 VIT1 PF01988.14 gi|147919585|ref|YP_686675.1| - 0.6 9.5 3.3 0.69 9.3 2.3 1.1 1 0 0 1 1 1 0 VIT family MTD PF01993.13 gi|147919586|ref|YP_686674.1| - 1.6e-121 404.6 6.1 1.8e-121 404.4 4.2 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase HAD PF12710.2 gi|147919586|ref|YP_686674.1| - 0.046 13.8 0.0 0.12 12.4 0.0 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PsiE PF06146.7 gi|147919587|ref|YP_686673.1| - 9.9e-09 35.3 2.7 9.9e-09 35.3 1.9 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E TRIQK PF15168.1 gi|147919587|ref|YP_686673.1| - 0.053 13.4 2.5 0.053 13.4 1.7 2.5 2 2 1 3 3 3 0 Triple QxxK/R motif-containing protein family IBV_3C PF03620.8 gi|147919587|ref|YP_686673.1| - 0.28 11.1 2.5 4.5 7.2 0.9 2.5 2 1 1 3 3 3 0 IBV 3C protein DUF3792 PF12670.2 gi|147919587|ref|YP_686673.1| - 1 9.2 7.1 0.82 9.5 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3792) DUF2976 PF11190.3 gi|147919587|ref|YP_686673.1| - 1.1 8.7 11.1 0.34 10.4 2.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) TauE PF01925.14 gi|147919587|ref|YP_686673.1| - 1.3 8.4 13.2 2.4 7.5 6.5 2.0 1 1 1 2 2 2 0 Sulfite exporter TauE/SafE MerC PF03203.9 gi|147919587|ref|YP_686673.1| - 1.7 9.0 8.9 0.26 11.6 2.4 2.2 1 1 1 2 2 2 0 MerC mercury resistance protein Sex_peptide PF08138.6 gi|147919587|ref|YP_686673.1| - 2.8 7.8 6.0 6.8 6.6 0.0 3.1 3 1 0 3 3 3 0 Sex peptide (SP) family Cytochrom_B_N PF00033.14 gi|147919587|ref|YP_686673.1| - 3 7.1 11.3 0.2 10.9 1.4 2.4 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB DUF1129 PF06570.6 gi|147919587|ref|YP_686673.1| - 4.8 6.4 12.0 0.91 8.7 0.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1129) DUF4233 PF14017.1 gi|147919587|ref|YP_686673.1| - 8.3 6.3 16.2 0.25 11.2 3.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4233) PsiE PF06146.7 gi|147919588|ref|YP_686672.1| - 4.8e-12 45.9 10.6 4.8e-12 45.9 7.3 1.7 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF4305 PF14146.1 gi|147919588|ref|YP_686672.1| - 0.082 12.6 2.5 0.21 11.3 1.8 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4305) DUF4401 PF14351.1 gi|147919588|ref|YP_686672.1| - 0.088 11.7 12.1 0.14 11.1 8.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4401) IncA PF04156.9 gi|147919588|ref|YP_686672.1| - 0.13 11.8 0.0 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 IncA protein 5TM-5TMR_LYT PF07694.7 gi|147919588|ref|YP_686672.1| - 0.33 10.2 11.3 1.5 8.0 0.9 2.2 1 1 1 2 2 2 0 5TMR of 5TMR-LYT TauE PF01925.14 gi|147919588|ref|YP_686672.1| - 1.2 8.5 12.4 0.047 13.1 2.3 2.0 1 1 1 2 2 2 0 Sulfite exporter TauE/SafE PseudoU_synth_1 PF01416.15 gi|147919589|ref|YP_686671.1| - 1.5e-31 108.9 0.0 9.7e-18 64.5 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase FAD-oxidase_C PF02913.14 gi|147919591|ref|YP_686669.1| - 5.2e-60 202.8 0.0 6.7e-60 202.4 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|147919591|ref|YP_686669.1| - 2.4e-47 159.8 0.6 1.6e-46 157.1 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain EmrE PF13536.1 gi|147919592|ref|YP_686668.1| - 0.0005 20.2 1.8 0.00057 20.0 1.2 1.2 1 0 0 1 1 1 1 Multidrug resistance efflux transporter DUF4013 PF13197.1 gi|147919592|ref|YP_686668.1| - 0.0018 17.6 0.6 0.0018 17.6 0.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Oxidored_q4 PF00507.14 gi|147919592|ref|YP_686668.1| - 0.012 15.3 2.7 0.015 15.1 1.8 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SUR7 PF06687.7 gi|147919592|ref|YP_686668.1| - 0.016 14.8 4.3 0.016 14.7 3.0 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF1469 PF07332.6 gi|147919592|ref|YP_686668.1| - 0.025 14.3 6.2 0.032 13.9 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) VIT1 PF01988.14 gi|147919592|ref|YP_686668.1| - 0.029 13.8 2.9 0.029 13.8 2.0 1.1 1 0 0 1 1 1 0 VIT family DUF2621 PF11084.3 gi|147919592|ref|YP_686668.1| - 0.052 13.2 0.1 0.052 13.2 0.0 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF2621) DUF3433 PF11915.3 gi|147919592|ref|YP_686668.1| - 0.052 13.7 2.2 1 9.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3433) DUF4293 PF14126.1 gi|147919592|ref|YP_686668.1| - 0.093 12.6 4.4 0.12 12.2 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF3487 PF11990.3 gi|147919592|ref|YP_686668.1| - 0.099 12.0 2.5 0.14 11.5 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2207 PF09972.4 gi|147919592|ref|YP_686668.1| - 0.14 10.7 3.1 0.13 10.7 2.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC2_membrane_3 PF12698.2 gi|147919592|ref|YP_686668.1| - 0.15 11.0 5.0 0.16 10.9 3.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein NfeD PF01957.13 gi|147919592|ref|YP_686668.1| - 0.18 11.9 5.0 0.22 11.6 3.5 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF485 PF04341.7 gi|147919592|ref|YP_686668.1| - 0.19 11.4 3.2 0.22 11.2 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF485 HIG_1_N PF04588.8 gi|147919592|ref|YP_686668.1| - 0.31 10.8 4.0 7.6 6.3 0.2 2.2 2 0 0 2 2 2 0 Hypoxia induced protein conserved region RseC_MucC PF04246.7 gi|147919592|ref|YP_686668.1| - 0.36 10.4 3.7 0.42 10.1 2.6 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4191 PF13829.1 gi|147919592|ref|YP_686668.1| - 0.54 9.3 2.7 0.57 9.2 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF3754 PF12576.3 gi|147919592|ref|YP_686668.1| - 0.59 9.7 2.6 0.67 9.5 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) ABC2_membrane_2 PF12679.2 gi|147919592|ref|YP_686668.1| - 0.96 8.2 8.0 1.2 7.9 5.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein E1-E2_ATPase PF00122.15 gi|147919592|ref|YP_686668.1| - 0.98 8.4 5.6 1.2 8.1 3.9 1.1 1 0 0 1 1 1 0 E1-E2 ATPase Phage_holin_1 PF04531.8 gi|147919592|ref|YP_686668.1| - 1.3 9.1 5.6 1.8 8.6 3.9 1.1 1 0 0 1 1 1 0 Bacteriophage holin DUF2636 PF11120.3 gi|147919592|ref|YP_686668.1| - 2 7.9 6.0 0.45 10.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) SKG6 PF08693.5 gi|147919592|ref|YP_686668.1| - 6.3 6.2 11.9 4.3 6.7 2.8 2.4 2 0 0 2 2 2 0 Transmembrane alpha-helix domain SurE PF01975.12 gi|147919594|ref|YP_686666.1| - 2.3e-61 206.5 1.1 2.8e-61 206.2 0.7 1.1 1 0 0 1 1 1 1 Survival protein SurE ATP-grasp_3 PF02655.9 gi|147919595|ref|YP_686665.1| - 1.7e-30 106.0 0.0 2.3e-30 105.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|147919595|ref|YP_686665.1| - 3.9e-07 29.9 0.0 4.2e-06 26.6 0.0 2.4 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|147919595|ref|YP_686665.1| - 1e-05 24.4 0.1 0.0049 15.6 0.0 3.2 1 1 2 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon Hydantoinase_A PF01968.13 gi|147919596|ref|YP_686664.1| - 4.2e-12 45.7 0.2 5.3e-12 45.4 0.1 1.1 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|147919596|ref|YP_686664.1| - 0.047 13.1 0.3 0.29 10.6 0.1 2.1 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|147919596|ref|YP_686664.1| - 0.048 11.9 0.0 0.08 11.2 0.0 1.3 1 0 0 1 1 1 0 MutL protein Lumazine_bd PF12870.2 gi|147919597|ref|YP_686663.1| - 0.059 13.4 0.1 0.059 13.4 0.1 2.3 3 1 0 3 3 3 0 Lumazine-binding domain T2SE PF00437.15 gi|147919598|ref|YP_686662.1| - 5.5e-47 159.9 0.0 9.5e-47 159.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|147919598|ref|YP_686662.1| - 0.0016 17.9 0.1 0.0032 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SF PF00482.18 gi|147919599|ref|YP_686661.1| - 3.5e-32 110.9 0.8 4.5e-19 68.5 0.0 5.8 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F DUF883 PF05957.8 gi|147919599|ref|YP_686661.1| - 0.015 15.6 0.2 10 6.6 0.0 3.0 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF4448 PF14610.1 gi|147919599|ref|YP_686661.1| - 0.11 11.9 2.3 3 7.2 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF4448) KaiC PF06745.8 gi|147919600|ref|YP_686660.1| - 5e-05 22.5 0.0 8.7e-05 21.7 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|147919600|ref|YP_686660.1| - 0.00048 19.5 0.1 0.22 10.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF2990 PF11693.3 gi|147919600|ref|YP_686660.1| - 0.13 12.0 0.2 0.38 10.6 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) ALMT PF11744.3 gi|147919601|ref|YP_686659.1| - 0.13 10.9 0.1 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter V4R PF02830.13 gi|147919602|ref|YP_686658.1| - 3.3e-15 55.6 0.2 5.3e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|147919602|ref|YP_686658.1| - 1e-07 31.4 0.0 1.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147919602|ref|YP_686658.1| - 2.8e-06 27.0 0.0 5.2e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|147919602|ref|YP_686658.1| - 2.6e-05 23.7 0.0 4.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147919602|ref|YP_686658.1| - 0.00034 20.2 0.0 0.00053 19.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|147919602|ref|YP_686658.1| - 0.0019 17.5 0.0 0.004 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|147919602|ref|YP_686658.1| - 0.0087 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_38 PF13936.1 gi|147919602|ref|YP_686658.1| - 0.0096 15.4 0.0 0.032 13.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|147919602|ref|YP_686658.1| - 0.0096 15.6 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|147919602|ref|YP_686658.1| - 0.079 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MukB PF04310.7 gi|147919602|ref|YP_686658.1| - 0.094 12.0 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal HTH_40 PF14493.1 gi|147919602|ref|YP_686658.1| - 0.097 12.9 0.0 0.31 11.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HATPase_c PF02518.21 gi|147919604|ref|YP_686656.1| - 3.4e-19 68.6 0.1 9.1e-19 67.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|147919604|ref|YP_686656.1| - 5.7e-09 36.6 0.0 1.1e-08 35.6 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|147919604|ref|YP_686656.1| - 9.7e-08 32.1 0.0 1.9e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|147919604|ref|YP_686656.1| - 1.1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|147919604|ref|YP_686656.1| - 0.00016 21.4 1.5 0.0064 16.2 0.2 3.2 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|147919604|ref|YP_686656.1| - 0.0013 18.5 0.0 0.0036 17.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|147919604|ref|YP_686656.1| - 0.021 15.1 0.0 0.068 13.5 0.0 1.9 1 0 0 1 1 1 0 PAS domain HATPase_c_5 PF14501.1 gi|147919604|ref|YP_686656.1| - 0.021 14.4 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 GHKL domain PAS_4 PF08448.5 gi|147919604|ref|YP_686656.1| - 0.067 13.2 0.0 0.24 11.4 0.0 1.9 1 1 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.1 gi|147919604|ref|YP_686656.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_2 PF07568.7 gi|147919605|ref|YP_686655.1| - 4.8e-28 96.8 0.6 1.2e-27 95.5 0.4 1.7 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|147919605|ref|YP_686655.1| - 1.4e-08 34.9 0.0 3.8e-08 33.6 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|147919605|ref|YP_686655.1| - 2.8e-07 30.1 0.0 1.1e-06 28.2 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147919605|ref|YP_686655.1| - 3.3e-06 26.8 0.0 6.3e-05 22.7 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_4 PF08448.5 gi|147919605|ref|YP_686655.1| - 3.5e-06 27.0 0.0 2.2e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|147919605|ref|YP_686655.1| - 2.7e-05 24.4 0.2 2.7e-05 24.4 0.1 2.0 2 0 0 2 2 2 1 HWE histidine kinase PAS_7 PF12860.2 gi|147919605|ref|YP_686655.1| - 0.023 14.6 0.0 0.17 11.9 0.0 2.3 1 1 0 1 1 1 0 PAS fold DUF4201 PF13870.1 gi|147919605|ref|YP_686655.1| - 0.33 10.3 5.8 0.47 9.8 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4201) Xan_ur_permease PF00860.15 gi|147919606|ref|YP_686654.1| - 3.9e-41 140.8 57.5 5.9e-41 140.2 39.9 1.3 1 0 0 1 1 1 1 Permease family HATPase_c PF02518.21 gi|147919607|ref|YP_686653.1| - 1.5e-19 69.7 0.0 3.1e-19 68.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147919607|ref|YP_686653.1| - 3.2e-11 43.4 0.0 7.5e-11 42.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|147919607|ref|YP_686653.1| - 2.1e-06 27.7 0.0 4.4e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|147919607|ref|YP_686653.1| - 5.5e-06 26.1 0.0 1.7e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|147919607|ref|YP_686653.1| - 0.0001 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|147919607|ref|YP_686653.1| - 0.0002 20.9 0.0 0.00045 19.8 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|147919607|ref|YP_686653.1| - 0.0013 18.5 0.0 0.0033 17.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|147919607|ref|YP_686653.1| - 0.092 12.4 0.0 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3797 PF12677.2 gi|147919608|ref|YP_686652.1| - 0.023 14.3 0.1 0.039 13.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3797) DUF217 PF02697.9 gi|147919609|ref|YP_686651.1| - 0.24 11.6 5.8 3.6 7.8 0.1 2.7 2 1 0 2 2 2 0 Uncharacterized ACR, COG1753 DUF4516 PF14990.1 gi|147919610|ref|YP_686650.1| - 1.2 8.7 4.2 1.2 8.6 0.2 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) Lactonase PF10282.4 gi|147919611|ref|YP_686649.1| - 2.1e-25 89.5 0.0 7e-06 25.3 0.0 7.9 5 2 3 8 8 8 6 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|147919611|ref|YP_686649.1| - 1.4e-24 86.8 5.5 3.3e-07 29.9 0.2 5.9 2 2 3 5 5 5 5 SMP-30/Gluconolaconase/LRE-like region Cytochrom_D1 PF02239.11 gi|147919611|ref|YP_686649.1| - 2.7e-15 55.5 6.6 0.00019 19.8 0.1 5.7 4 2 2 6 6 6 3 Cytochrome D1 heme domain PD40 PF07676.7 gi|147919611|ref|YP_686649.1| - 3.8e-11 42.3 12.8 4.1 7.1 0.0 11.0 12 0 0 12 12 12 2 WD40-like Beta Propeller Repeat PQQ_2 PF13360.1 gi|147919611|ref|YP_686649.1| - 5.6e-08 32.5 11.2 0.003 17.0 0.3 4.8 1 1 3 4 4 4 3 PQQ-like domain Arylesterase PF01731.15 gi|147919611|ref|YP_686649.1| - 6.2e-07 29.3 4.8 0.75 9.8 0.1 6.9 7 1 1 8 8 8 2 Arylesterase PQQ PF01011.16 gi|147919611|ref|YP_686649.1| - 6.8e-05 22.2 5.6 0.059 12.9 0.0 6.0 6 0 0 6 6 6 1 PQQ enzyme repeat SBP56 PF05694.6 gi|147919611|ref|YP_686649.1| - 6.9e-05 21.5 0.2 5.1 5.4 0.0 5.5 4 2 1 5 5 5 2 56kDa selenium binding protein (SBP56) PQQ_3 PF13570.1 gi|147919611|ref|YP_686649.1| - 0.00023 21.2 30.8 9.1 6.7 0.2 9.8 9 1 0 9 9 9 2 PQQ-like domain DUF1513 PF07433.6 gi|147919611|ref|YP_686649.1| - 0.0028 16.6 1.2 0.6 8.9 0.0 4.5 4 2 0 4 4 4 1 Protein of unknown function (DUF1513) NHL PF01436.16 gi|147919611|ref|YP_686649.1| - 0.0057 16.5 17.3 7.1 6.7 0.0 9.5 11 1 1 12 12 12 2 NHL repeat CxxCxxCC PF03692.10 gi|147919612|ref|YP_686648.1| - 0.00021 21.7 0.5 0.00022 21.6 0.4 1.1 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DJ-1_PfpI PF01965.19 gi|147919613|ref|YP_686647.1| - 7.3e-15 54.7 0.0 1e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|147919613|ref|YP_686647.1| - 5.2e-13 48.5 0.0 6.8e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase CxxCxxCC PF03692.10 gi|147919614|ref|YP_686646.1| - 4.1e-12 46.3 1.6 8.7e-12 45.3 1.1 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Peptidase_M6 PF05547.6 gi|147919615|ref|YP_686645.1| - 5.4e-05 21.4 0.2 8.9e-05 20.7 0.1 1.2 1 0 0 1 1 1 1 Immune inhibitor A peptidase M6 lci PF12197.3 gi|147919615|ref|YP_686645.1| - 0.00019 20.9 1.3 0.00019 20.9 0.9 2.8 2 0 0 2 2 2 1 Bacillus cereus group antimicrobial protein fn3 PF00041.16 gi|147919615|ref|YP_686645.1| - 0.0013 18.8 2.6 0.0045 17.0 1.8 2.0 1 0 0 1 1 1 1 Fibronectin type III domain NIR_SIR PF01077.17 gi|147919616|ref|YP_686644.1| - 2.4e-34 117.9 0.0 3.2e-34 117.5 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|147919616|ref|YP_686644.1| - 9.5e-15 53.9 0.1 2e-14 52.9 0.0 1.6 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain PMBR PF09373.5 gi|147919616|ref|YP_686644.1| - 1.4e-05 24.7 0.0 3e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Pseudomurein-binding repeat PadR PF03551.9 gi|147919617|ref|YP_686643.1| - 6.4e-25 86.7 0.1 9.1e-25 86.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|147919617|ref|YP_686643.1| - 0.00055 19.9 0.0 0.0019 18.1 0.0 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|147919617|ref|YP_686643.1| - 0.001 18.6 0.1 0.0017 17.9 0.0 1.5 1 1 0 1 1 1 1 HxlR-like helix-turn-helix DUF2513 PF10711.4 gi|147919617|ref|YP_686643.1| - 0.0015 18.5 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_45 PF14947.1 gi|147919617|ref|YP_686643.1| - 0.021 14.6 0.0 0.054 13.3 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix VASP_tetra PF08776.6 gi|147919617|ref|YP_686643.1| - 0.061 12.6 0.1 1.1 8.6 0.0 2.6 3 0 0 3 3 3 0 VASP tetramerisation domain ArsR PF09824.4 gi|147919617|ref|YP_686643.1| - 0.073 12.3 0.3 0.18 11.0 0.1 1.8 1 1 1 2 2 2 0 ArsR transcriptional regulator Gly_rich_SFCGS PF14272.1 gi|147919617|ref|YP_686643.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycine-rich SFCGS RDD PF06271.7 gi|147919618|ref|YP_686642.1| - 6.2e-26 90.9 5.0 7.5e-26 90.6 3.5 1.1 1 0 0 1 1 1 1 RDD family PCP_red PF08369.5 gi|147919618|ref|YP_686642.1| - 0.0067 16.2 1.3 0.016 15.0 0.9 1.7 1 0 0 1 1 1 1 Proto-chlorophyllide reductase 57 kD subunit DUF4013 PF13197.1 gi|147919618|ref|YP_686642.1| - 0.013 14.8 7.5 0.023 14.0 5.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF975 PF06161.6 gi|147919618|ref|YP_686642.1| - 0.059 13.1 6.7 0.023 14.4 3.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF975) MscL PF01741.13 gi|147919618|ref|YP_686642.1| - 1.3 9.1 6.7 0.96 9.6 3.0 1.8 2 0 0 2 2 2 0 Large-conductance mechanosensitive channel, MscL DUF805 PF05656.9 gi|147919618|ref|YP_686642.1| - 5.2 6.9 8.9 4.9 7.0 4.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF805) Pyridox_oxidase PF01243.15 gi|147919619|ref|YP_686641.1| - 1.3e-12 47.5 0.0 1.6e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|147919619|ref|YP_686641.1| - 0.0085 15.6 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) HTH_20 PF12840.2 gi|147919620|ref|YP_686640.1| - 5.1e-14 51.8 0.6 7e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_45 PF14947.1 gi|147919620|ref|YP_686640.1| - 7.1e-05 22.5 0.3 0.00016 21.3 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|147919620|ref|YP_686640.1| - 0.0003 20.7 0.5 0.0008 19.3 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|147919620|ref|YP_686640.1| - 0.00066 19.2 0.0 0.0014 18.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|147919620|ref|YP_686640.1| - 0.008 15.5 0.1 0.015 14.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Swi5 PF07061.6 gi|147919620|ref|YP_686640.1| - 0.094 12.5 0.3 0.23 11.2 0.2 1.7 1 0 0 1 1 1 0 Swi5 MTH865 PF07747.6 gi|147919621|ref|YP_686639.1| - 2.9e-28 97.3 0.0 3.1e-28 97.1 0.0 1.0 1 0 0 1 1 1 1 MTH865-like family HisKA_2 PF07568.7 gi|147919622|ref|YP_686638.1| - 2.5e-30 104.1 0.5 4.9e-30 103.1 0.4 1.5 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|147919622|ref|YP_686638.1| - 3.5e-11 42.8 0.1 1e-10 41.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|147919622|ref|YP_686638.1| - 2.8e-09 36.7 0.0 7.5e-09 35.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|147919622|ref|YP_686638.1| - 4.7e-08 33.3 0.0 1.4e-07 31.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|147919622|ref|YP_686638.1| - 5.4e-07 29.6 0.0 1.7e-06 28.0 0.0 1.8 1 1 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|147919622|ref|YP_686638.1| - 4.1e-05 23.9 0.1 8.7e-05 22.8 0.1 1.5 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|147919622|ref|YP_686638.1| - 5.1e-05 23.0 0.0 0.0001 22.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|147919622|ref|YP_686638.1| - 0.00077 19.2 0.0 0.0027 17.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|147919622|ref|YP_686638.1| - 0.0076 16.2 0.0 0.032 14.2 0.0 2.0 1 1 0 1 1 1 1 PAS fold HNH PF01844.18 gi|147919624|ref|YP_686636.1| - 4.7e-11 42.3 1.0 7.1e-11 41.8 0.7 1.3 1 0 0 1 1 1 1 HNH endonuclease Endonuclease_7 PF02945.10 gi|147919624|ref|YP_686636.1| - 1.4e-05 24.6 1.8 1.9e-05 24.2 1.3 1.2 1 0 0 1 1 1 1 Recombination endonuclease VII LIM PF00412.17 gi|147919624|ref|YP_686636.1| - 0.015 15.3 0.1 0.62 10.1 0.1 2.2 1 1 0 1 1 1 0 LIM domain Cytochrom_NNT PF03264.9 gi|147919624|ref|YP_686636.1| - 0.015 14.7 2.5 0.02 14.3 1.7 1.1 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Cytochrome_C7 PF14522.1 gi|147919624|ref|YP_686636.1| - 0.081 12.5 6.1 0.18 11.4 4.0 1.7 1 1 0 1 1 1 0 Cytochrome c7 Paired_CXXCH_1 PF09699.5 gi|147919624|ref|YP_686636.1| - 0.083 12.4 2.2 0.12 11.8 0.2 2.2 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Fer2 PF00111.22 gi|147919624|ref|YP_686636.1| - 0.14 11.8 2.6 3.7 7.3 0.1 2.3 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Vps39_2 PF10367.4 gi|147919624|ref|YP_686636.1| - 0.19 11.9 1.4 1.9 8.6 0.1 2.1 1 1 1 2 2 2 0 Vacuolar sorting protein 39 domain 2 Cytochrom_c3_2 PF14537.1 gi|147919624|ref|YP_686636.1| - 0.24 11.7 5.3 0.19 12.1 2.5 1.6 1 1 0 1 1 1 0 Cytochrome c3 PSCyt3 PF07627.6 gi|147919624|ref|YP_686636.1| - 0.68 9.8 3.9 1.7 8.5 0.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1588) Fer4_16 PF13484.1 gi|147919624|ref|YP_686636.1| - 2.1 9.1 4.9 2.6 8.8 0.6 2.3 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Phage_integrase PF00589.17 gi|147919625|ref|YP_686635.1| - 2.2e-32 112.0 1.7 2.3e-32 112.0 0.3 1.6 2 0 0 2 2 2 1 Phage integrase family DUF1202 PF06717.6 gi|147919625|ref|YP_686635.1| - 0.011 14.9 1.4 0.017 14.3 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1202) DUF2971 PF11185.3 gi|147919626|ref|YP_686634.1| - 5.2e-06 27.0 0.3 1.8e-05 25.3 0.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2971) AIPR PF10592.4 gi|147919627|ref|YP_686632.1| - 3.1e-47 161.3 0.7 5.2e-47 160.6 0.5 1.3 1 0 0 1 1 1 1 AIPR protein D5_N PF08706.6 gi|147919628|ref|YP_686631.1| - 2.7e-25 89.2 0.3 6.2e-25 88.0 0.2 1.7 1 0 0 1 1 1 1 D5 N terminal like Prim-Pol PF09250.6 gi|147919628|ref|YP_686631.1| - 2.3e-24 86.1 0.4 5.6e-24 84.9 0.0 1.8 2 0 0 2 2 2 1 Bifunctional DNA primase/polymerase, N-terminal DNA_primase_lrg PF04104.9 gi|147919628|ref|YP_686631.1| - 1.1e-07 31.3 0.1 2.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Pox_D5 PF03288.11 gi|147919628|ref|YP_686631.1| - 0.0083 16.3 0.0 0.022 15.0 0.0 1.7 1 0 0 1 1 1 1 Poxvirus D5 protein-like Nuc_deoxyrib_tr PF05014.10 gi|147919629|ref|YP_686630.1| - 0.01 15.7 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase ABC_tran PF00005.22 gi|147919631|ref|YP_686628.1| - 8.1e-38 129.8 0.0 1.6e-37 128.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|147919631|ref|YP_686628.1| - 4.3e-37 128.0 20.1 6.2e-37 127.5 14.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|147919631|ref|YP_686628.1| - 1.4e-06 28.4 0.1 0.00049 20.1 0.1 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|147919631|ref|YP_686628.1| - 1.6e-05 24.1 0.0 5.6e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|147919631|ref|YP_686628.1| - 3.3e-05 23.2 0.3 0.00099 18.3 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|147919631|ref|YP_686628.1| - 0.00029 20.8 0.2 0.00056 19.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|147919631|ref|YP_686628.1| - 0.001 19.8 0.1 0.0024 18.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919631|ref|YP_686628.1| - 0.0016 17.9 0.1 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|147919631|ref|YP_686628.1| - 0.0054 15.8 0.0 0.012 14.7 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|147919631|ref|YP_686628.1| - 0.011 15.2 0.0 0.022 14.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|147919631|ref|YP_686628.1| - 0.013 15.1 0.1 0.1 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|147919631|ref|YP_686628.1| - 0.017 15.0 0.1 0.38 10.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|147919631|ref|YP_686628.1| - 0.018 14.8 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 MobB PF03205.9 gi|147919631|ref|YP_686628.1| - 0.02 14.5 0.1 0.073 12.7 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|147919631|ref|YP_686628.1| - 0.034 14.4 0.0 0.098 12.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain Miro PF08477.8 gi|147919631|ref|YP_686628.1| - 0.042 14.3 0.0 0.11 13.0 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_22 PF13401.1 gi|147919631|ref|YP_686628.1| - 0.049 13.7 0.0 0.14 12.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|147919631|ref|YP_686628.1| - 0.061 13.1 0.2 0.13 12.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|147919631|ref|YP_686628.1| - 0.071 13.4 0.1 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|147919631|ref|YP_686628.1| - 0.082 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|147919631|ref|YP_686628.1| - 0.089 12.4 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 GTP_EFTU PF00009.22 gi|147919631|ref|YP_686628.1| - 0.091 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_25 PF13481.1 gi|147919631|ref|YP_686628.1| - 0.091 12.1 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|147919631|ref|YP_686628.1| - 0.093 12.5 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|147919631|ref|YP_686628.1| - 0.098 12.0 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DDE_Tnp_1 PF01609.16 gi|147919632|ref|YP_686626.1| - 1.1e-05 25.0 0.1 3.9e-05 23.2 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain Archease PF01951.11 gi|147919632|ref|YP_686626.1| - 0.11 12.4 0.1 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 Archease protein family (MTH1598/TM1083) Methyltransf_18 PF12847.2 gi|147919633|ref|YP_686624.1| - 4.7e-10 40.0 0.0 7e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147919633|ref|YP_686624.1| - 1.1e-09 38.5 0.0 1.7e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147919633|ref|YP_686624.1| - 5.3e-09 36.4 0.0 8.4e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147919633|ref|YP_686624.1| - 2.3e-07 31.1 0.0 3.6e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147919633|ref|YP_686624.1| - 2.2e-06 27.4 0.0 3.9e-06 26.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147919633|ref|YP_686624.1| - 4.8e-05 22.9 0.0 6.9e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147919633|ref|YP_686624.1| - 8.3e-05 21.8 0.0 0.0001 21.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|147919633|ref|YP_686624.1| - 0.016 15.2 0.0 0.044 13.8 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain TetR_N PF00440.18 gi|147919634|ref|YP_686623.1| - 7.3e-16 57.5 0.1 3.9e-15 55.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Aldo_ket_red PF00248.16 gi|147919635|ref|YP_686622.1| - 2e-47 161.3 0.0 2.6e-47 160.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|147919635|ref|YP_686622.1| - 4e-10 39.8 8.2 8e-10 38.9 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919635|ref|YP_686622.1| - 5.4e-09 36.3 3.8 0.00013 22.3 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919635|ref|YP_686622.1| - 1.5e-08 34.7 8.9 2.9e-08 33.8 6.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919635|ref|YP_686622.1| - 3.2e-06 27.0 8.4 6.2e-06 26.1 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919635|ref|YP_686622.1| - 0.00018 21.2 12.4 0.00068 19.3 8.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147919635|ref|YP_686622.1| - 0.0011 18.7 7.9 0.064 13.1 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|147919635|ref|YP_686622.1| - 0.0012 18.4 2.2 0.055 13.0 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|147919635|ref|YP_686622.1| - 0.0091 15.5 3.2 0.0091 15.5 2.2 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919635|ref|YP_686622.1| - 0.013 16.1 6.7 2 9.1 1.4 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|147919635|ref|YP_686622.1| - 0.016 15.0 1.8 0.016 15.0 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147919635|ref|YP_686622.1| - 0.11 13.1 0.6 0.11 13.1 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|147919635|ref|YP_686622.1| - 0.78 10.1 15.1 0.22 11.9 2.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919635|ref|YP_686622.1| - 2.5 8.6 14.5 0.75 10.2 2.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain ABC_tran PF00005.22 gi|147919636|ref|YP_686621.1| - 7.5e-25 87.8 0.0 5.5e-13 49.4 0.0 3.8 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|147919636|ref|YP_686621.1| - 8.7e-12 44.7 0.0 0.0018 17.5 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|147919636|ref|YP_686621.1| - 5.6e-10 39.6 0.4 0.0062 16.5 0.1 4.2 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|147919636|ref|YP_686621.1| - 7.9e-08 31.7 0.0 0.013 15.0 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|147919636|ref|YP_686621.1| - 2.6e-07 30.8 0.0 0.00084 19.3 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain DnaJ_CXXCXGXG PF00684.14 gi|147919636|ref|YP_686621.1| - 8.6e-07 28.9 2.8 0.00044 20.2 0.4 3.3 3 0 0 3 3 3 1 DnaJ central domain AAA_33 PF13671.1 gi|147919636|ref|YP_686621.1| - 6.3e-06 26.1 0.0 0.04 13.7 0.0 3.3 3 0 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|147919636|ref|YP_686621.1| - 9.7e-06 24.8 0.1 0.15 11.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|147919636|ref|YP_686621.1| - 1.6e-05 24.3 0.0 0.19 11.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|147919636|ref|YP_686621.1| - 1.7e-05 25.6 3.1 0.065 14.0 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_18 PF13238.1 gi|147919636|ref|YP_686621.1| - 2.4e-05 24.6 0.0 0.59 10.4 0.0 3.9 4 0 0 4 4 4 2 AAA domain AAA_23 PF13476.1 gi|147919636|ref|YP_686621.1| - 6.7e-05 23.3 0.6 0.13 12.5 0.1 2.6 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|147919636|ref|YP_686621.1| - 0.00012 21.6 0.0 0.0043 16.5 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|147919636|ref|YP_686621.1| - 0.00019 21.3 0.0 0.89 9.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|147919636|ref|YP_686621.1| - 0.00031 19.9 0.6 5.4 5.9 0.0 4.6 5 0 0 5 5 5 0 AAA ATPase domain APS_kinase PF01583.15 gi|147919636|ref|YP_686621.1| - 0.00048 19.8 0.1 0.18 11.4 0.0 2.5 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_22 PF13401.1 gi|147919636|ref|YP_686621.1| - 0.00076 19.6 0.0 0.55 10.3 0.0 3.0 3 0 0 3 3 2 1 AAA domain DUF2075 PF09848.4 gi|147919636|ref|YP_686621.1| - 0.00095 18.2 0.0 0.64 8.9 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) KaiC PF06745.8 gi|147919636|ref|YP_686621.1| - 0.001 18.2 0.0 1.7 7.7 0.0 2.8 2 0 0 2 2 2 2 KaiC AAA_19 PF13245.1 gi|147919636|ref|YP_686621.1| - 0.0015 18.2 0.1 0.75 9.5 0.1 2.8 2 0 0 2 2 2 1 Part of AAA domain ArgK PF03308.11 gi|147919636|ref|YP_686621.1| - 0.0017 17.1 0.2 0.33 9.6 0.0 2.9 3 0 0 3 3 3 1 ArgK protein Lar_restr_allev PF14354.1 gi|147919636|ref|YP_686621.1| - 0.002 18.4 3.4 0.29 11.4 0.2 2.7 3 0 0 3 3 2 1 Restriction alleviation protein Lar NACHT PF05729.7 gi|147919636|ref|YP_686621.1| - 0.0026 17.4 0.0 0.25 10.9 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.2 gi|147919636|ref|YP_686621.1| - 0.006 16.0 0.0 1.5 8.2 0.0 3.1 3 0 0 3 3 3 1 AAA-like domain cobW PF02492.14 gi|147919636|ref|YP_686621.1| - 0.0074 15.7 0.0 0.32 10.4 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|147919636|ref|YP_686621.1| - 0.0091 15.9 0.1 0.34 10.8 0.0 2.9 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|147919636|ref|YP_686621.1| - 0.01 15.4 0.0 0.96 8.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|147919636|ref|YP_686621.1| - 0.023 13.5 0.0 1.1 8.0 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|147919636|ref|YP_686621.1| - 0.023 14.3 0.1 2.5 7.8 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA12 PF10443.4 gi|147919636|ref|YP_686621.1| - 0.027 12.9 0.1 1.2 7.5 0.0 2.4 2 0 0 2 2 2 0 RNA12 protein Gtr1_RagA PF04670.7 gi|147919636|ref|YP_686621.1| - 0.032 13.3 0.0 13 4.8 0.0 3.4 3 1 0 3 3 3 0 Gtr1/RagA G protein conserved region Miro PF08477.8 gi|147919636|ref|YP_686621.1| - 0.051 14.0 0.0 2.2 8.8 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein BCA_ABC_TP_C PF12399.3 gi|147919636|ref|YP_686621.1| - 0.063 12.9 1.5 0.14 11.8 0.2 2.3 2 0 0 2 2 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_28 PF13521.1 gi|147919636|ref|YP_686621.1| - 0.064 13.2 0.0 5.2 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|147919636|ref|YP_686621.1| - 0.071 12.2 0.0 12 4.8 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.11 gi|147919636|ref|YP_686621.1| - 0.076 12.2 0.0 2.4 7.3 0.0 2.7 2 0 0 2 2 2 0 PhoH-like protein zf-TFIIB PF13453.1 gi|147919636|ref|YP_686621.1| - 1.5 8.0 11.2 2.6 7.3 0.0 3.5 3 1 0 3 3 3 0 Transcription factor zinc-finger zf-RING_3 PF14369.1 gi|147919636|ref|YP_686621.1| - 1.9 8.5 10.3 0.97 9.4 0.3 3.7 4 0 0 4 4 3 0 zinc-finger TF_Zn_Ribbon PF08271.7 gi|147919636|ref|YP_686621.1| - 8.6 5.7 10.3 27 4.1 0.0 3.7 3 1 0 3 3 3 0 TFIIB zinc-binding PadR PF03551.9 gi|147919637|ref|YP_686620.1| - 1.4e-14 53.5 0.1 2.3e-14 52.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|147919637|ref|YP_686620.1| - 3.9e-10 39.6 0.3 9.3e-10 38.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|147919637|ref|YP_686620.1| - 5.3e-05 22.8 0.2 0.00025 20.6 0.1 2.1 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|147919637|ref|YP_686620.1| - 0.0013 18.4 0.0 0.0032 17.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Vir_act_alpha_C PF10400.4 gi|147919637|ref|YP_686620.1| - 0.0021 18.3 0.1 0.57 10.5 0.0 2.9 3 0 0 3 3 3 1 Virulence activator alpha C-term HxlR PF01638.12 gi|147919637|ref|YP_686620.1| - 0.016 14.8 0.4 0.029 13.9 0.1 1.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix MarR PF01047.17 gi|147919637|ref|YP_686620.1| - 0.021 14.5 0.0 0.043 13.5 0.0 1.7 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|147919637|ref|YP_686620.1| - 0.026 14.1 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|147919637|ref|YP_686620.1| - 0.049 13.9 0.0 0.088 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|147919637|ref|YP_686620.1| - 0.062 12.9 0.0 2.6 7.7 0.0 2.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|147919637|ref|YP_686620.1| - 0.062 13.2 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family EntA_Immun PF08951.5 gi|147919637|ref|YP_686620.1| - 0.49 10.5 3.1 9.5 6.4 0.2 3.4 3 1 0 3 3 3 0 Enterocin A Immunity Lysine_decarbox PF03641.9 gi|147919638|ref|YP_686619.1| - 2.2e-41 140.7 0.0 2.9e-41 140.4 0.0 1.2 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|147919638|ref|YP_686619.1| - 0.078 11.8 0.1 0.62 8.9 0.1 1.9 2 0 0 2 2 2 0 DNA recombination-mediator protein A DUF1405 PF07187.6 gi|147919639|ref|YP_686618.1| - 2.6e-36 124.8 21.7 5.1e-36 123.8 15.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1405) Hexapep PF00132.19 gi|147919640|ref|YP_686617.1| - 4.1e-14 51.3 8.1 1.9e-10 39.7 1.8 2.5 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|147919640|ref|YP_686617.1| - 6.1e-14 51.2 8.5 1.4e-11 43.6 2.3 2.4 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase OTCace PF00185.19 gi|147919641|ref|YP_686616.1| - 4e-57 192.5 0.1 6.2e-57 191.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|147919641|ref|YP_686616.1| - 1.8e-50 170.3 0.0 3.2e-50 169.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PALP PF00291.20 gi|147919641|ref|YP_686616.1| - 0.003 16.8 0.0 0.0045 16.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Internalin_N PF12354.3 gi|147919642|ref|YP_686615.1| - 0.1 12.1 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal Acetyltransf_6 PF13480.1 gi|147919643|ref|YP_686614.1| - 6.7e-08 32.5 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919643|ref|YP_686614.1| - 5.5e-05 22.0 0.1 0.005 15.5 0.1 2.8 2 1 1 3 3 3 1 FemAB family APOBEC_C PF05240.9 gi|147919643|ref|YP_686614.1| - 0.15 11.5 1.4 0.46 9.9 0.3 2.3 2 0 0 2 2 2 0 APOBEC-like C-terminal domain Acetyltransf_6 PF13480.1 gi|147919644|ref|YP_686613.1| - 7.8e-15 55.0 0.0 1.3e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919644|ref|YP_686613.1| - 2.1e-09 36.6 0.0 3.3e-08 32.6 0.0 2.3 2 1 0 2 2 2 1 FemAB family DUF482 PF04339.7 gi|147919644|ref|YP_686613.1| - 0.0012 17.7 0.1 0.017 14.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF482 Response_reg PF00072.19 gi|147919645|ref|YP_686612.1| - 2.2e-14 53.3 0.0 2.6e-14 53.1 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF123 PF01986.11 gi|147919646|ref|YP_686611.1| - 2.6e-26 91.6 0.0 3.4e-26 91.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 Peptidase_M54 PF07998.6 gi|147919647|ref|YP_686610.1| - 2.3e-17 63.3 1.7 4.4e-17 62.4 1.2 1.5 1 1 0 1 1 1 1 Peptidase family M54 zf-4CXXC_R1 PF10497.4 gi|147919647|ref|YP_686610.1| - 0.0049 16.9 0.3 0.0081 16.2 0.2 1.3 1 0 0 1 1 1 1 Zinc-finger domain of monoamine-oxidase A repressor R1 Peptidase_M10 PF00413.19 gi|147919647|ref|YP_686610.1| - 0.005 16.5 0.0 0.0053 16.4 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin PF01421.14 gi|147919647|ref|YP_686610.1| - 0.009 15.6 0.2 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 Reprolysin (M12B) family zinc metalloprotease Peptidase_M66 PF10462.4 gi|147919647|ref|YP_686610.1| - 0.049 12.4 0.0 0.065 12.0 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.3 gi|147919647|ref|YP_686610.1| - 0.089 11.2 0.2 0.12 10.8 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_5 PF13688.1 gi|147919647|ref|YP_686610.1| - 0.092 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_3 PF13582.1 gi|147919647|ref|YP_686610.1| - 0.11 13.0 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like PCMT PF01135.14 gi|147919648|ref|YP_686609.1| - 7.1e-63 211.9 0.0 7.9e-63 211.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|147919648|ref|YP_686609.1| - 4e-09 36.2 0.0 5.5e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147919648|ref|YP_686609.1| - 3.1e-06 27.7 0.0 4.2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|147919648|ref|YP_686609.1| - 7.7e-05 21.8 0.0 0.00015 20.8 0.0 1.5 2 0 0 2 2 2 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|147919648|ref|YP_686609.1| - 0.00048 20.1 0.0 0.0006 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|147919648|ref|YP_686609.1| - 0.00065 18.6 0.1 0.0057 15.6 0.1 1.8 1 1 1 2 2 2 1 Fibrillarin GCD14 PF08704.5 gi|147919648|ref|YP_686609.1| - 0.00071 19.1 0.0 0.00085 18.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|147919648|ref|YP_686609.1| - 0.0017 17.4 0.0 0.0019 17.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|147919648|ref|YP_686609.1| - 0.0018 17.6 0.0 0.0029 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|147919648|ref|YP_686609.1| - 0.0056 15.7 0.0 0.0069 15.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|147919648|ref|YP_686609.1| - 0.031 13.3 0.0 0.042 12.8 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase DUF938 PF06080.7 gi|147919648|ref|YP_686609.1| - 0.038 13.5 0.0 0.05 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF938) ACP_syn_III_C PF08541.5 gi|147919648|ref|YP_686609.1| - 0.058 13.4 0.0 0.18 11.8 0.0 1.7 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Methyltransf_24 PF13578.1 gi|147919648|ref|YP_686609.1| - 0.12 13.2 0.0 0.18 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF2387 PF09526.5 gi|147919649|ref|YP_686608.1| - 0.0002 21.2 0.4 0.00039 20.2 0.3 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) DUF4330 PF14221.1 gi|147919649|ref|YP_686608.1| - 0.022 14.6 1.6 0.031 14.1 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) zinc_ribbon_5 PF13719.1 gi|147919649|ref|YP_686608.1| - 8.3 6.0 6.6 2.6 7.6 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DUF371 PF04027.8 gi|147919650|ref|YP_686607.1| - 2.8e-52 175.8 0.2 3.2e-52 175.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF3107 PF11305.3 gi|147919650|ref|YP_686607.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3107) DUF1652 PF07865.6 gi|147919650|ref|YP_686607.1| - 0.081 12.5 0.1 8.7 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) DUF2046 PF09755.4 gi|147919651|ref|YP_686606.1| - 0.066 12.0 3.6 0.08 11.8 2.5 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein H4 (DUF2046) DUF4337 PF14235.1 gi|147919651|ref|YP_686606.1| - 1.7 8.4 7.2 0.73 9.6 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) ThiS PF02597.15 gi|147919653|ref|YP_686604.1| - 4.2e-05 23.9 0.2 4.7e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|147919653|ref|YP_686604.1| - 0.056 13.2 0.1 0.069 12.9 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I Aminotran_5 PF00266.14 gi|147919654|ref|YP_686603.1| - 3.3e-125 417.6 0.0 3.7e-125 417.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|147919654|ref|YP_686603.1| - 1e-15 57.6 0.4 1.6e-15 57.0 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|147919654|ref|YP_686603.1| - 5e-09 34.9 0.0 8.9e-09 34.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|147919654|ref|YP_686603.1| - 1.5e-07 30.6 0.2 1.6e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147919654|ref|YP_686603.1| - 2.3e-07 30.2 0.0 3.2e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|147919654|ref|YP_686603.1| - 0.00016 20.2 0.0 0.00045 18.7 0.0 1.7 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SLA_LP_auto_ag PF05889.8 gi|147919654|ref|YP_686603.1| - 0.00045 18.8 0.0 0.00072 18.1 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) SelA PF03841.8 gi|147919654|ref|YP_686603.1| - 0.013 14.3 0.0 0.02 13.6 0.0 1.3 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase CobD_Cbib PF03186.8 gi|147919655|ref|YP_686602.1| - 0.053 12.5 0.1 0.053 12.5 0.1 2.4 2 1 0 2 2 2 0 CobD/Cbib protein PTS_2-RNA PF01885.11 gi|147919656|ref|YP_686600.1| - 1.8e-38 131.7 0.0 2.2e-38 131.4 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family RTC PF01137.16 gi|147919657|ref|YP_686599.1| - 5.9e-80 267.3 0.0 6.7e-80 267.1 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|147919657|ref|YP_686599.1| - 1.9e-17 63.1 0.0 3.9e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain PEGA PF08308.6 gi|147919658|ref|YP_686598.1| - 5.2e-20 71.0 4.8 3.6e-12 45.8 0.1 3.2 3 0 0 3 3 3 2 PEGA domain CarboxypepD_reg PF13620.1 gi|147919658|ref|YP_686598.1| - 6.2e-16 58.2 5.6 1.5e-06 28.1 0.1 5.5 5 0 0 5 5 5 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919658|ref|YP_686598.1| - 0.0063 16.5 2.4 8.5 6.5 0.1 4.2 5 0 0 5 5 5 2 Domain of unknown function (DUF4480) DUF1926 PF09095.6 gi|147919658|ref|YP_686598.1| - 0.024 13.8 0.0 0.051 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1926) Dioxygenase_C PF00775.16 gi|147919658|ref|YP_686598.1| - 0.032 13.4 0.0 0.079 12.2 0.0 1.7 1 1 0 1 1 1 0 Dioxygenase DNA_mis_repair PF01119.14 gi|147919658|ref|YP_686598.1| - 0.069 12.6 0.0 7.7 6.0 0.0 2.9 3 0 0 3 3 3 0 DNA mismatch repair protein, C-terminal domain Big_1 PF02369.11 gi|147919658|ref|YP_686598.1| - 0.085 12.7 0.7 2.8 7.9 0.0 3.3 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|147919659|ref|YP_686597.1| - 5.5e-07 29.5 2.2 0.00036 20.5 0.1 6.2 6 1 0 6 6 6 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919659|ref|YP_686597.1| - 4.8e-06 26.5 4.7 0.18 11.8 0.0 4.4 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|147919659|ref|YP_686597.1| - 1e-05 25.3 16.5 0.0061 16.4 1.6 4.8 4 1 1 5 5 5 2 Bacterial Ig-like domain (group 1) PhosphMutase PF10143.4 gi|147919660|ref|YP_686596.1| - 7.4e-54 181.9 0.0 1e-53 181.5 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|147919660|ref|YP_686596.1| - 5.4e-38 130.8 0.0 6.5e-38 130.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily GHMP_kinases_N PF00288.21 gi|147919661|ref|YP_686595.1| - 3.7e-16 58.9 1.6 8.9e-16 57.7 1.1 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|147919661|ref|YP_686595.1| - 1.7e-08 34.5 0.0 4.5e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal DUF4352 PF11611.3 gi|147919662|ref|YP_686594.1| - 0.00029 20.9 0.1 0.00039 20.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) LTD PF00932.14 gi|147919662|ref|YP_686594.1| - 0.0034 17.4 0.0 0.0062 16.5 0.0 1.4 1 0 0 1 1 1 1 Lamin Tail Domain DUF1108 PF06531.6 gi|147919662|ref|YP_686594.1| - 0.11 12.6 0.2 0.18 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) NPCBM_assoc PF10633.4 gi|147919662|ref|YP_686594.1| - 0.14 12.2 3.8 0.64 10.1 0.1 2.8 3 0 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|147919663|ref|YP_686593.1| - 0.00048 20.1 1.2 0.00089 19.2 0.8 1.4 1 0 0 1 1 1 1 CARDB Rgp1 PF08737.5 gi|147919663|ref|YP_686593.1| - 0.0097 15.0 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Rgp1 NiFeSe_Hases PF00374.14 gi|147919664|ref|YP_686592.1| - 1.6e-36 126.1 2.8 9.7e-16 57.6 0.0 4.4 2 2 2 4 4 4 4 Nickel-dependent hydrogenase V-SNARE PF05008.10 gi|147919664|ref|YP_686592.1| - 0.00081 19.5 0.8 1 9.5 0.0 2.3 2 0 0 2 2 2 2 Vesicle transport v-SNARE protein N-terminus Oxidored_q6 PF01058.17 gi|147919665|ref|YP_686591.1| - 1.3e-23 83.0 1.5 3.5e-23 81.6 0.0 2.0 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|147919665|ref|YP_686591.1| - 1.6e-13 49.6 17.0 3.4e-07 29.5 3.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919665|ref|YP_686591.1| - 9.3e-11 41.3 11.3 9.3e-11 41.3 7.9 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919665|ref|YP_686591.1| - 4.8e-10 39.6 13.0 9.1e-10 38.7 7.7 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919665|ref|YP_686591.1| - 1.3e-08 34.3 16.3 1.1e-05 25.0 2.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919665|ref|YP_686591.1| - 1.6e-08 34.2 10.2 1.8e-06 27.6 6.7 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919665|ref|YP_686591.1| - 2.8e-08 33.8 10.6 2.8e-08 33.8 7.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919665|ref|YP_686591.1| - 7.5e-08 31.8 17.1 0.00036 20.2 2.2 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147919665|ref|YP_686591.1| - 3.1e-05 23.9 17.9 0.0063 16.7 1.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919665|ref|YP_686591.1| - 8.1e-05 23.2 13.6 0.55 11.0 9.6 2.8 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|147919665|ref|YP_686591.1| - 9.3e-05 22.7 10.3 0.0083 16.4 0.5 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|147919665|ref|YP_686591.1| - 0.00013 22.4 11.4 0.035 14.6 0.2 3.0 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|147919665|ref|YP_686591.1| - 0.00015 21.7 26.1 0.00074 19.5 9.6 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919665|ref|YP_686591.1| - 0.00048 20.4 12.7 0.0093 16.3 1.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919665|ref|YP_686591.1| - 0.0011 19.2 17.5 0.0065 16.7 1.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919665|ref|YP_686591.1| - 0.059 13.9 6.6 0.059 13.9 4.6 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain FrhB_FdhB_C PF04432.8 gi|147919666|ref|YP_686590.1| - 9.7e-40 135.6 0.0 1.3e-39 135.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147919666|ref|YP_686590.1| - 3.6e-24 84.4 0.2 9.3e-24 83.0 0.1 1.7 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term ABC_tran PF00005.22 gi|147919667|ref|YP_686589.1| - 1e-35 123.0 0.0 1.5e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919667|ref|YP_686589.1| - 3.1e-06 27.3 0.1 0.0051 16.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|147919667|ref|YP_686589.1| - 9.9e-06 25.6 1.3 2.1e-05 24.5 0.8 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|147919667|ref|YP_686589.1| - 3.3e-05 24.0 0.1 0.0002 21.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|147919667|ref|YP_686589.1| - 0.00069 18.8 0.0 0.001 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|147919667|ref|YP_686589.1| - 0.00071 19.4 0.7 0.0053 16.6 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|147919667|ref|YP_686589.1| - 0.0014 18.9 0.0 0.0029 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147919667|ref|YP_686589.1| - 0.0015 19.3 0.1 0.0034 18.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|147919667|ref|YP_686589.1| - 0.0019 17.8 0.2 0.011 15.5 0.0 2.2 2 1 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|147919667|ref|YP_686589.1| - 0.0033 17.0 0.0 0.0064 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919667|ref|YP_686589.1| - 0.0036 16.7 0.1 0.0075 15.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|147919667|ref|YP_686589.1| - 0.0056 16.1 0.3 0.02 14.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|147919667|ref|YP_686589.1| - 0.0056 16.3 0.1 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|147919667|ref|YP_686589.1| - 0.0065 15.7 0.3 0.15 11.2 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|147919667|ref|YP_686589.1| - 0.041 14.0 0.1 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|147919667|ref|YP_686589.1| - 0.047 13.3 0.0 0.098 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|147919667|ref|YP_686589.1| - 0.058 13.3 0.1 0.21 11.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|147919667|ref|YP_686589.1| - 0.067 13.1 0.1 0.41 10.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|147919667|ref|YP_686589.1| - 0.098 12.6 0.1 0.25 11.2 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|147919667|ref|YP_686589.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Hpr_kinase_C PF07475.7 gi|147919667|ref|YP_686589.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain ABC_ATPase PF09818.4 gi|147919667|ref|YP_686589.1| - 0.14 10.7 0.6 8.1 4.9 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class UPF0014 PF03649.8 gi|147919668|ref|YP_686588.1| - 6.2e-38 130.3 14.9 7.2e-38 130.1 10.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) DUF3194 PF11419.3 gi|147919669|ref|YP_686587.1| - 0.00042 20.4 5.2 0.00048 20.2 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) RNase_PH_C PF03725.10 gi|147919669|ref|YP_686587.1| - 0.017 15.0 0.3 0.023 14.6 0.2 1.5 1 1 0 1 1 1 0 3' exoribonuclease family, domain 2 DUF1320 PF07030.7 gi|147919669|ref|YP_686587.1| - 0.058 13.1 0.9 0.061 13.0 0.6 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1320) Acid_phosphat_B PF03767.9 gi|147919669|ref|YP_686587.1| - 0.085 12.2 0.1 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) YbaB_DNA_bd PF02575.11 gi|147919669|ref|YP_686587.1| - 0.2 11.5 3.6 0.098 12.5 1.0 1.5 2 0 0 2 2 2 0 YbaB/EbfC DNA-binding family Prefoldin_2 PF01920.15 gi|147919670|ref|YP_686586.1| - 1.7e-21 75.9 20.2 2e-21 75.7 14.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit Tropomyosin_1 PF12718.2 gi|147919670|ref|YP_686586.1| - 0.0096 15.7 4.5 0.0096 15.7 3.1 2.1 1 1 1 2 2 2 1 Tropomyosin like Baculo_PEP_C PF04513.7 gi|147919670|ref|YP_686586.1| - 0.014 15.2 5.6 0.35 10.7 0.1 2.1 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.1 gi|147919670|ref|YP_686586.1| - 0.018 14.2 14.2 0.027 13.6 9.8 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|147919670|ref|YP_686586.1| - 0.06 13.1 7.5 0.092 12.4 5.2 1.4 1 0 0 1 1 1 0 Laminin Domain II Barstar PF01337.13 gi|147919670|ref|YP_686586.1| - 0.062 13.1 1.3 0.36 10.7 0.0 2.0 2 0 0 2 2 2 0 Barstar (barnase inhibitor) Nsp1_C PF05064.8 gi|147919670|ref|YP_686586.1| - 0.1 12.2 12.3 0.15 11.7 0.6 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF2203 PF09969.4 gi|147919670|ref|YP_686586.1| - 0.18 12.0 9.0 35 4.6 6.3 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Hemerythrin PF01814.18 gi|147919670|ref|YP_686586.1| - 0.28 11.3 3.3 1.2 9.3 2.3 1.8 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF2968 PF11180.3 gi|147919670|ref|YP_686586.1| - 0.31 10.4 19.5 0.32 10.3 7.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) MscS_porin PF12795.2 gi|147919670|ref|YP_686586.1| - 0.42 9.8 20.3 1.1 8.5 14.1 1.6 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain WXG100 PF06013.7 gi|147919670|ref|YP_686586.1| - 0.68 9.9 9.2 2.8 8.0 0.1 2.5 2 0 0 2 2 2 0 Proteins of 100 residues with WXG Phage_GPO PF05929.6 gi|147919670|ref|YP_686586.1| - 1 8.5 13.1 0.075 12.2 0.7 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF479 PF04336.7 gi|147919670|ref|YP_686586.1| - 1.2 9.3 5.9 5.3 7.2 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF479 Syntaxin PF00804.20 gi|147919670|ref|YP_686586.1| - 1.2 9.3 14.0 2.2e+02 2.0 9.7 2.2 1 1 0 1 1 1 0 Syntaxin FlxA PF14282.1 gi|147919670|ref|YP_686586.1| - 1.2 9.0 23.0 3.4 7.6 2.5 2.2 2 0 0 2 2 2 0 FlxA-like protein AAA_13 PF13166.1 gi|147919670|ref|YP_686586.1| - 1.4 7.2 6.7 2.1 6.7 4.6 1.2 1 0 0 1 1 1 0 AAA domain BLOC1_2 PF10046.4 gi|147919670|ref|YP_686586.1| - 1.4 9.0 7.9 5.7 7.1 0.5 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.3 gi|147919670|ref|YP_686586.1| - 1.5 8.7 14.0 0.77 9.6 1.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Uds1 PF15456.1 gi|147919670|ref|YP_686586.1| - 1.5 8.8 10.5 2.1 8.3 7.2 1.2 1 0 0 1 1 1 0 Up-regulated During Septation Peptidase_C98 PF15499.1 gi|147919670|ref|YP_686586.1| - 1.6 7.9 4.1 4.1 6.6 2.8 1.6 1 1 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase V_ATPase_I PF01496.14 gi|147919670|ref|YP_686586.1| - 1.8 6.3 12.6 3.8 5.2 8.7 1.5 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family APG17 PF04108.7 gi|147919670|ref|YP_686586.1| - 1.9 7.1 11.3 4.2 6.0 7.8 1.5 1 1 0 1 1 1 0 Autophagy protein Apg17 GED PF02212.13 gi|147919670|ref|YP_686586.1| - 1.9 8.4 7.9 0.32 10.8 2.2 2.1 1 1 1 2 2 2 0 Dynamin GTPase effector domain HBS1_N PF08938.5 gi|147919670|ref|YP_686586.1| - 1.9 8.6 5.3 3.9 7.6 0.6 2.3 2 0 0 2 2 2 0 HBS1 N-terminus DUF1342 PF07072.6 gi|147919670|ref|YP_686586.1| - 2 8.0 9.7 1.5 8.4 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1342) vATP-synt_E PF01991.13 gi|147919670|ref|YP_686586.1| - 2 7.6 12.9 1.3 8.2 5.9 2.0 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit Exonuc_VII_L PF02601.10 gi|147919670|ref|YP_686586.1| - 2.1 7.4 8.1 2.6 7.1 5.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Baculo_p24 PF05073.7 gi|147919670|ref|YP_686586.1| - 2.5 7.6 5.1 9.7 5.7 3.5 1.7 1 1 0 1 1 1 0 Baculovirus P24 capsid protein EzrA PF06160.7 gi|147919670|ref|YP_686586.1| - 2.6 6.1 15.4 11 4.0 10.7 1.8 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Prefoldin PF02996.12 gi|147919670|ref|YP_686586.1| - 2.7 7.6 14.5 0.4 10.3 0.9 2.5 1 1 1 2 2 2 0 Prefoldin subunit DUF972 PF06156.8 gi|147919670|ref|YP_686586.1| - 3.3 8.1 13.1 7.1 7.0 5.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) APG6 PF04111.7 gi|147919670|ref|YP_686586.1| - 3.4 6.6 17.3 5.5 5.9 12.0 1.2 1 1 0 1 1 1 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|147919670|ref|YP_686586.1| - 3.4 7.7 9.1 5.1 7.2 6.3 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family FlaC_arch PF05377.6 gi|147919670|ref|YP_686586.1| - 3.5 7.6 6.0 2.3 8.1 0.3 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Tweety PF04906.8 gi|147919670|ref|YP_686586.1| - 3.8 5.8 5.5 0.94 7.8 0.9 1.8 1 1 1 2 2 2 0 Tweety Spc24 PF08286.6 gi|147919670|ref|YP_686586.1| - 4 7.1 15.3 1.8 8.3 1.7 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 GrpE PF01025.14 gi|147919670|ref|YP_686586.1| - 4.2 6.8 15.0 27 4.2 10.4 1.9 1 1 0 1 1 1 0 GrpE Cortex-I_coil PF09304.5 gi|147919670|ref|YP_686586.1| - 4.4 7.3 19.8 5.1 7.1 3.7 2.4 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF4446 PF14584.1 gi|147919670|ref|YP_686586.1| - 4.5 7.0 10.2 8.4 6.2 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) IncA PF04156.9 gi|147919670|ref|YP_686586.1| - 4.8 6.7 22.2 25 4.4 15.4 1.8 1 1 0 1 1 1 0 IncA protein FlgN PF05130.7 gi|147919670|ref|YP_686586.1| - 5.4 7.2 16.6 19 5.5 11.5 1.8 1 1 0 1 1 1 0 FlgN protein SseC PF04888.7 gi|147919670|ref|YP_686586.1| - 5.4 6.2 16.5 88 2.2 12.0 1.9 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family FliD_C PF07195.7 gi|147919670|ref|YP_686586.1| - 5.4 6.2 9.1 1.7 7.9 3.2 1.8 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Microtub_assoc PF07989.6 gi|147919670|ref|YP_686586.1| - 6.8 6.6 12.8 3.6 7.4 1.2 2.4 2 0 0 2 2 2 0 Microtubule associated DUF4407 PF14362.1 gi|147919670|ref|YP_686586.1| - 7.4 5.4 12.0 21 3.9 8.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3450 PF11932.3 gi|147919670|ref|YP_686586.1| - 8.6 5.5 19.5 3.7 6.7 6.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF4618 PF15397.1 gi|147919670|ref|YP_686586.1| - 8.9 5.5 16.2 24 4.1 11.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Pcc1 PF09341.5 gi|147919671|ref|YP_686585.1| - 5.9e-19 67.8 0.2 6.7e-19 67.7 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|147919672|ref|YP_686584.1| - 9.2e-11 41.0 6.6 1.1e-10 40.7 4.5 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPXG PF14255.1 gi|147919672|ref|YP_686584.1| - 0.00031 20.4 1.2 0.29 10.9 0.0 2.1 2 0 0 2 2 2 2 Cysteine-rich CPXCG C1_1 PF00130.17 gi|147919672|ref|YP_686584.1| - 0.00069 19.2 2.5 0.00083 19.0 1.7 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|147919672|ref|YP_686584.1| - 0.0026 17.1 2.5 0.0089 15.4 1.7 1.7 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|147919672|ref|YP_686584.1| - 0.004 16.8 0.6 0.004 16.8 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|147919672|ref|YP_686584.1| - 0.0082 15.9 2.8 1.5 8.7 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|147919672|ref|YP_686584.1| - 0.0099 15.2 7.2 0.016 14.6 0.8 2.2 1 1 1 2 2 2 1 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|147919672|ref|YP_686584.1| - 0.012 14.8 2.2 0.09 12.0 1.7 1.9 1 1 1 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|147919672|ref|YP_686584.1| - 0.014 15.2 2.5 0.017 14.9 1.8 1.1 1 0 0 1 1 1 0 IBR domain zf-FCS PF06467.9 gi|147919672|ref|YP_686584.1| - 0.017 14.7 4.5 0.7 9.5 0.1 2.1 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DZR PF12773.2 gi|147919672|ref|YP_686584.1| - 0.025 14.3 1.2 0.036 13.8 0.8 1.3 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_S27e PF01667.12 gi|147919672|ref|YP_686584.1| - 0.033 13.7 0.9 0.037 13.5 0.6 1.2 1 0 0 1 1 1 0 Ribosomal protein S27 PyrI_C PF02748.10 gi|147919672|ref|YP_686584.1| - 0.034 13.5 0.3 0.034 13.5 0.2 2.0 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CHCC PF10276.4 gi|147919672|ref|YP_686584.1| - 0.037 13.8 0.2 0.037 13.8 0.1 1.5 2 0 0 2 2 1 0 Zinc-finger domain zinc-ribbons_6 PF07191.7 gi|147919672|ref|YP_686584.1| - 0.039 13.7 0.9 0.044 13.5 0.7 1.1 1 0 0 1 1 1 0 zinc-ribbons Elf1 PF05129.8 gi|147919672|ref|YP_686584.1| - 0.046 13.4 0.9 0.055 13.1 0.7 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like ZZ PF00569.12 gi|147919672|ref|YP_686584.1| - 0.052 13.0 1.5 3.6 7.2 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type zf-CHY PF05495.7 gi|147919672|ref|YP_686584.1| - 0.061 13.4 1.5 0.077 13.1 1.1 1.2 1 0 0 1 1 1 0 CHY zinc finger NOB1_Zn_bind PF08772.6 gi|147919672|ref|YP_686584.1| - 0.063 13.1 0.7 0.067 13.0 0.5 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_5 PF13719.1 gi|147919672|ref|YP_686584.1| - 0.065 12.8 5.1 0.36 10.4 3.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF951 PF06107.6 gi|147919672|ref|YP_686584.1| - 0.072 12.6 3.7 0.18 11.3 0.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zinc_ribbon_4 PF13717.1 gi|147919672|ref|YP_686584.1| - 0.081 12.6 5.1 0.78 9.4 3.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|147919672|ref|YP_686584.1| - 0.089 12.4 1.5 0.11 12.1 1.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|147919672|ref|YP_686584.1| - 0.089 12.7 5.5 0.48 10.4 3.8 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-BED PF02892.10 gi|147919672|ref|YP_686584.1| - 0.091 12.5 6.4 0.094 12.4 0.2 2.0 1 1 1 2 2 2 0 BED zinc finger Prok-RING_1 PF14446.1 gi|147919672|ref|YP_686584.1| - 0.11 12.2 4.4 0.25 11.1 3.0 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 CpXC PF14353.1 gi|147919672|ref|YP_686584.1| - 0.12 12.3 3.1 1.4 8.8 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-AN1 PF01428.11 gi|147919672|ref|YP_686584.1| - 0.12 12.2 2.0 0.23 11.3 1.4 1.4 1 1 1 2 2 2 0 AN1-like Zinc finger TF_Zn_Ribbon PF08271.7 gi|147919672|ref|YP_686584.1| - 0.13 11.6 0.2 0.15 11.4 0.2 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Tmemb_55A PF09788.4 gi|147919672|ref|YP_686584.1| - 0.17 10.9 2.2 0.18 10.8 1.6 1.0 1 0 0 1 1 1 0 Transmembrane protein 55A DUF329 PF03884.9 gi|147919672|ref|YP_686584.1| - 0.2 11.2 1.9 1.6 8.3 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) TFIIS_C PF01096.13 gi|147919672|ref|YP_686584.1| - 0.3 10.7 3.6 6.4 6.4 0.3 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3268 PF11672.3 gi|147919672|ref|YP_686584.1| - 0.35 10.9 2.9 6.8 6.8 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) A2L_zn_ribbon PF08792.5 gi|147919672|ref|YP_686584.1| - 0.41 10.1 4.3 0.92 9.0 0.2 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-TFIIB PF13453.1 gi|147919672|ref|YP_686584.1| - 0.42 9.8 2.7 0.56 9.4 1.9 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-ISL3 PF14690.1 gi|147919672|ref|YP_686584.1| - 0.57 10.2 5.6 0.89 9.6 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SprT-like PF10263.4 gi|147919672|ref|YP_686584.1| - 0.58 9.8 2.1 0.61 9.7 1.5 1.1 1 0 0 1 1 1 0 SprT-like family DUF2197 PF09963.4 gi|147919672|ref|YP_686584.1| - 0.66 9.9 3.1 13 5.8 0.4 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc_ribbon_6 PF14599.1 gi|147919672|ref|YP_686584.1| - 0.79 9.5 4.2 0.94 9.3 2.9 1.2 1 0 0 1 1 1 0 Zinc-ribbon Zn_ribbon_recom PF13408.1 gi|147919672|ref|YP_686584.1| - 3.9 7.7 5.8 4.6 7.5 0.6 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_L37ae PF01780.14 gi|147919673|ref|YP_686583.1| - 2.8e-30 104.0 6.3 3.2e-30 103.8 4.4 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|147919673|ref|YP_686583.1| - 0.0033 17.2 2.4 0.0033 17.2 1.6 2.0 2 0 0 2 2 2 1 Transposase zinc-ribbon domain C1_1 PF00130.17 gi|147919673|ref|YP_686583.1| - 0.0044 16.7 1.8 0.007 16.0 1.2 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2054 PF10218.4 gi|147919673|ref|YP_686583.1| - 0.022 14.5 0.5 0.028 14.2 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2054) DUF2387 PF09526.5 gi|147919673|ref|YP_686583.1| - 0.032 14.1 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-H2C2_2 PF13465.1 gi|147919673|ref|YP_686583.1| - 0.057 13.7 0.7 2.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Rep_fac-A_C PF08646.5 gi|147919673|ref|YP_686583.1| - 0.064 12.9 0.5 0.086 12.5 0.3 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain Lar_restr_allev PF14354.1 gi|147919673|ref|YP_686583.1| - 0.067 13.5 0.2 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-like PF04071.7 gi|147919673|ref|YP_686583.1| - 0.073 12.7 0.3 0.12 12.0 0.2 1.5 1 0 0 1 1 1 0 Cysteine-rich small domain DZR PF12773.2 gi|147919673|ref|YP_686583.1| - 0.14 12.0 0.8 0.24 11.2 0.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|147919673|ref|YP_686583.1| - 0.21 11.2 2.9 0.18 11.4 1.1 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|147919673|ref|YP_686583.1| - 0.35 10.5 2.6 0.25 11.0 0.4 1.7 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.13 gi|147919673|ref|YP_686583.1| - 0.59 9.8 3.5 4.9 6.8 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prim_Zn_Ribbon PF08273.7 gi|147919673|ref|YP_686583.1| - 1.1 9.4 9.0 0.33 11.0 3.4 2.1 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase RNase_PH PF01138.16 gi|147919674|ref|YP_686582.1| - 1.8e-30 105.9 0.0 2.5e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|147919674|ref|YP_686582.1| - 1.1e-08 34.9 0.1 2e-08 34.0 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|147919675|ref|YP_686581.1| - 9.2e-35 119.8 0.0 1.3e-34 119.3 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|147919675|ref|YP_686581.1| - 1.8e-14 53.4 0.2 3.5e-14 52.4 0.2 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_1 PF00013.24 gi|147919676|ref|YP_686580.1| - 2.4e-11 43.0 0.6 4.6e-11 42.1 0.4 1.5 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.1 gi|147919676|ref|YP_686580.1| - 1.7e-08 33.6 0.0 3.2e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.18 gi|147919676|ref|YP_686580.1| - 3.1e-07 30.3 0.0 5.8e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain KH_3 PF13014.1 gi|147919676|ref|YP_686580.1| - 2.6e-05 23.7 0.1 7.5e-05 22.2 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|147919676|ref|YP_686580.1| - 0.00027 20.4 1.9 0.00034 20.1 0.2 2.2 2 1 0 2 2 2 1 KH domain Thioredoxin_9 PF14595.1 gi|147919676|ref|YP_686580.1| - 0.09 12.3 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin SBDS PF01172.13 gi|147919677|ref|YP_686579.1| - 2.2e-27 94.6 0.0 3.4e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|147919677|ref|YP_686579.1| - 2.6e-23 82.0 0.0 3.6e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|147919678|ref|YP_686578.1| - 6.1e-61 205.0 0.4 7.9e-61 204.6 0.3 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|147919678|ref|YP_686578.1| - 6.7e-13 47.6 0.1 1.3e-12 46.7 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|147919679|ref|YP_686577.1| - 1.8e-17 63.1 0.0 2.8e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|147919680|ref|YP_686576.1| - 1.3e-38 131.5 0.0 1.6e-38 131.3 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.12 gi|147919681|ref|YP_686575.1| - 1.4e-35 121.9 0.0 1.6e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 RNA binding B2 PF11473.3 gi|147919681|ref|YP_686575.1| - 0.037 13.6 0.1 0.45 10.1 0.0 2.2 2 0 0 2 2 2 0 RNA binding protein B2 Ribosomal_L15e PF00827.12 gi|147919682|ref|YP_686574.1| - 1.4e-82 275.8 10.3 1.7e-82 275.6 7.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 cobW PF02492.14 gi|147919683|ref|YP_686573.1| - 2.1e-36 125.0 0.3 2.6e-36 124.7 0.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|147919683|ref|YP_686573.1| - 5.5e-09 35.1 1.3 0.00045 19.0 0.2 2.1 2 0 0 2 2 2 2 ArgK protein PduV-EutP PF10662.4 gi|147919683|ref|YP_686573.1| - 0.00026 20.4 2.5 0.019 14.4 0.1 2.4 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.17 gi|147919683|ref|YP_686573.1| - 0.00027 20.4 0.0 0.00074 19.0 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|147919683|ref|YP_686573.1| - 0.00031 20.4 0.0 0.00095 18.8 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|147919683|ref|YP_686573.1| - 0.0028 17.6 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain TrwB_AAD_bind PF10412.4 gi|147919683|ref|YP_686573.1| - 0.017 13.7 0.0 0.025 13.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain LpxK PF02606.9 gi|147919683|ref|YP_686573.1| - 0.024 13.5 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase NTPase_1 PF03266.10 gi|147919683|ref|YP_686573.1| - 0.039 13.6 0.1 0.082 12.6 0.1 1.8 1 1 0 1 1 1 0 NTPase CbiA PF01656.18 gi|147919683|ref|YP_686573.1| - 0.05 12.9 0.2 0.21 11.0 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ATP_bind_1 PF03029.12 gi|147919683|ref|YP_686573.1| - 0.054 13.0 0.3 0.39 10.2 0.1 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|147919683|ref|YP_686573.1| - 0.063 12.7 0.7 7 6.0 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_5 PF07728.9 gi|147919683|ref|YP_686573.1| - 0.12 12.0 0.0 0.9 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|147919683|ref|YP_686573.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain PAS_9 PF13426.1 gi|147919684|ref|YP_686572.1| - 1.1e-39 135.0 0.6 2.8e-13 50.1 0.0 4.0 3 1 0 3 3 3 3 PAS domain PAS PF00989.19 gi|147919684|ref|YP_686572.1| - 1.4e-37 127.9 0.9 6.7e-13 48.4 0.1 4.2 4 1 0 4 4 4 3 PAS fold DUF835 PF05763.7 gi|147919684|ref|YP_686572.1| - 3.9e-29 100.9 0.2 2.6e-28 98.2 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF835) PAS_4 PF08448.5 gi|147919684|ref|YP_686572.1| - 7.4e-26 90.3 0.0 1.1e-11 44.6 0.0 3.4 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|147919684|ref|YP_686572.1| - 1.7e-20 73.1 0.6 4.5e-20 71.7 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain PAS_8 PF13188.1 gi|147919684|ref|YP_686572.1| - 2.4e-17 62.0 0.0 0.00014 21.5 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|147919684|ref|YP_686572.1| - 1.2e-12 48.5 0.1 1.3e-10 41.9 0.0 2.6 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|147919684|ref|YP_686572.1| - 4.2e-10 39.8 0.1 7e-07 29.3 0.0 3.0 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.6 gi|147919684|ref|YP_686572.1| - 9e-07 28.9 0.2 0.0006 19.8 0.1 3.7 3 1 0 3 3 3 1 PAS fold PAS_7 PF12860.2 gi|147919684|ref|YP_686572.1| - 1.7e-06 28.0 0.5 0.067 13.1 0.1 4.3 3 1 0 4 4 4 1 PAS fold PAS_10 PF13596.1 gi|147919684|ref|YP_686572.1| - 0.00069 19.8 0.0 2.4 8.4 0.0 3.3 3 0 0 3 3 3 2 PAS domain DUF3369 PF11849.3 gi|147919684|ref|YP_686572.1| - 0.0027 17.6 0.2 0.031 14.2 0.2 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3369) GAF PF01590.21 gi|147919684|ref|YP_686572.1| - 0.057 13.5 0.0 0.96 9.5 0.0 2.5 2 0 0 2 2 2 0 GAF domain ydhR PF08803.6 gi|147919684|ref|YP_686572.1| - 0.077 13.0 0.0 4.8 7.3 0.0 3.3 3 0 0 3 3 3 0 Putative mono-oxygenase ydhR SRP19 PF01922.12 gi|147919685|ref|YP_686570.1| - 6.6e-21 74.7 0.0 7.6e-21 74.4 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein PHP PF02811.14 gi|147919686|ref|YP_686569.1| - 2.7e-15 56.6 0.0 5e-15 55.7 0.0 1.4 1 1 0 1 1 1 1 PHP domain AP_endonuc_2 PF01261.19 gi|147919686|ref|YP_686569.1| - 0.062 12.5 0.2 0.13 11.5 0.1 1.8 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel RNase_P_p30 PF01876.11 gi|147919686|ref|YP_686569.1| - 0.13 11.5 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 RNase P subunit p30 Gar1 PF04410.9 gi|147919687|ref|YP_686568.1| - 5.4e-08 32.4 0.0 5.4e-08 32.4 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region DUF1667 PF07892.6 gi|147919687|ref|YP_686568.1| - 0.12 12.0 0.2 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) TFIIB PF00382.14 gi|147919688|ref|YP_686567.1| - 2.6e-45 152.0 2.6 8.4e-23 79.9 0.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|147919688|ref|YP_686567.1| - 4.8e-19 67.3 1.5 1.1e-18 66.2 1.0 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|147919688|ref|YP_686567.1| - 1.7e-05 24.0 0.6 0.022 14.0 0.1 3.7 2 1 0 2 2 2 2 Sigma-70, region 4 OrfB_Zn_ribbon PF07282.6 gi|147919688|ref|YP_686567.1| - 0.003 17.1 0.4 0.0083 15.7 0.3 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|147919688|ref|YP_686567.1| - 0.0055 15.8 0.1 0.015 14.5 0.1 1.7 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|147919688|ref|YP_686567.1| - 0.0089 15.5 0.2 0.019 14.4 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|147919688|ref|YP_686567.1| - 0.016 14.6 1.7 0.13 11.7 1.2 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain Cyclin_N PF00134.18 gi|147919688|ref|YP_686567.1| - 0.036 13.6 0.0 0.93 9.0 0.0 2.3 1 1 1 2 2 2 0 Cyclin, N-terminal domain HTH_AsnC-type PF13404.1 gi|147919688|ref|YP_686567.1| - 0.038 13.5 1.4 0.24 10.9 0.1 2.8 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain Lar_restr_allev PF14354.1 gi|147919688|ref|YP_686567.1| - 0.041 14.2 0.3 0.12 12.7 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Cyclin_C PF02984.14 gi|147919688|ref|YP_686567.1| - 0.049 13.5 0.0 7.3 6.5 0.0 2.6 2 0 0 2 2 2 0 Cyclin, C-terminal domain Elf1 PF05129.8 gi|147919688|ref|YP_686567.1| - 0.084 12.5 0.6 0.2 11.4 0.4 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DZR PF12773.2 gi|147919688|ref|YP_686567.1| - 0.12 12.1 0.4 0.3 10.9 0.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon HTH_31 PF13560.1 gi|147919688|ref|YP_686567.1| - 0.29 11.3 3.3 7 6.9 0.0 3.7 4 1 0 4 4 3 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|147919688|ref|YP_686567.1| - 0.64 10.0 3.4 1.9 8.4 0.3 2.5 1 1 1 2 2 2 0 Zinc ribbon domain TauE PF01925.14 gi|147919689|ref|YP_686566.1| - 2.2e-49 168.1 34.5 2.5e-49 167.8 23.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE AA_kinase PF00696.23 gi|147919690|ref|YP_686565.1| - 1.6e-12 47.5 0.2 1.9e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 Amino acid kinase family DUF2150 PF09920.4 gi|147919691|ref|YP_686564.1| - 4.4e-67 225.3 0.9 5.1e-67 225.1 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF1726 PF08351.6 gi|147919691|ref|YP_686564.1| - 0.03 13.9 0.0 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1726) PHAT PF09246.5 gi|147919691|ref|YP_686564.1| - 0.083 12.5 0.1 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 PHAT DHH PF01368.15 gi|147919692|ref|YP_686563.1| - 3.3e-13 49.5 0.0 5.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|147919692|ref|YP_686563.1| - 1.8e-12 46.7 2.0 1.8e-12 46.7 1.4 1.9 2 0 0 2 2 2 1 DHHA1 domain ADH_zinc_N PF00107.21 gi|147919692|ref|YP_686563.1| - 0.0034 16.9 0.0 0.052 13.1 0.0 2.3 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF340 PF03956.8 gi|147919693|ref|YP_686562.1| - 3.2e-61 205.9 23.0 3.6e-61 205.8 15.9 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) DUF340 PF03956.8 gi|147919694|ref|YP_686561.1| - 1.5e-06 27.6 7.2 1.9e-06 27.3 5.0 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) Asp-Al_Ex PF06826.7 gi|147919694|ref|YP_686561.1| - 0.00072 19.0 10.0 0.00087 18.8 6.9 1.0 1 0 0 1 1 1 1 Predicted Permease Membrane Region 5TM-5TMR_LYT PF07694.7 gi|147919694|ref|YP_686561.1| - 0.011 15.0 7.3 0.015 14.6 5.1 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT Na_H_Exchanger PF00999.16 gi|147919694|ref|YP_686561.1| - 0.015 13.8 10.4 0.018 13.6 7.2 1.0 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family Bax1-I PF01027.15 gi|147919694|ref|YP_686561.1| - 0.036 13.6 8.3 0.047 13.2 5.8 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 SHR3_chaperone PF08229.6 gi|147919694|ref|YP_686561.1| - 0.096 11.6 4.5 0.11 11.4 3.1 1.1 1 0 0 1 1 1 0 ER membrane protein SH3 MFS_Mycoplasma PF07672.8 gi|147919694|ref|YP_686561.1| - 0.1 11.7 4.6 0.12 11.4 3.2 1.2 1 0 0 1 1 1 0 Mycoplasma MFS transporter OATP PF03137.15 gi|147919694|ref|YP_686561.1| - 2.2 6.2 6.2 1.1 7.2 1.8 1.8 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family CcoS PF03597.10 gi|147919694|ref|YP_686561.1| - 2.7 7.5 13.7 2.8 7.4 0.5 3.4 2 1 1 3 3 3 0 Cytochrome oxidase maturation protein cbb3-type Tetraspannin PF00335.15 gi|147919694|ref|YP_686561.1| - 3.3 6.9 10.0 4.3 6.5 6.9 1.1 1 0 0 1 1 1 0 Tetraspanin family Amastin PF07344.6 gi|147919694|ref|YP_686561.1| - 3.8 7.0 7.3 0.23 11.0 1.4 1.6 2 0 0 2 2 2 0 Amastin surface glycoprotein Cpn60_TCP1 PF00118.19 gi|147919695|ref|YP_686560.1| - 5.6e-158 526.5 11.2 7.1e-158 526.2 7.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF1341 PF07071.6 gi|147919695|ref|YP_686560.1| - 0.005 16.3 1.5 0.0094 15.5 0.3 1.9 1 1 0 2 2 2 1 Protein of unknown function (DUF1341) PHP PF02811.14 gi|147919696|ref|YP_686559.1| - 3e-19 69.4 0.1 8e-19 68.0 0.1 1.9 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|147919696|ref|YP_686559.1| - 8.9e-13 47.5 1.9 9.6e-13 47.4 0.2 2.0 3 0 0 3 3 3 1 PHP-associated Rho_N PF07498.7 gi|147919696|ref|YP_686559.1| - 0.026 14.2 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain DUF2551 PF10826.3 gi|147919698|ref|YP_686557.1| - 1.1e-31 108.5 1.2 1.3e-31 108.3 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2551) NUDIX PF00293.23 gi|147919699|ref|YP_686556.1| - 1.3e-14 54.0 0.3 2.7e-14 52.9 0.2 1.6 1 1 0 1 1 1 1 NUDIX domain DHDPS PF00701.17 gi|147919700|ref|YP_686555.1| - 6.3e-69 231.7 0.0 7.1e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Pribosyltran_N PF13793.1 gi|147919700|ref|YP_686555.1| - 0.093 12.4 0.0 0.44 10.3 0.0 2.0 1 1 1 2 2 2 0 N-terminal domain of ribose phosphate pyrophosphokinase AFOR_C PF01314.13 gi|147919701|ref|YP_686554.1| - 1.1e-123 412.6 0.1 1.6e-123 412.1 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|147919701|ref|YP_686554.1| - 1.2e-72 243.5 0.1 2e-72 242.8 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|147919702|ref|YP_686553.1| - 6.5e-10 39.3 0.0 7.8e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family Glycos_transf_1 PF00534.15 gi|147919703|ref|YP_686552.1| - 2.5e-27 95.4 0.0 6.3e-27 94.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147919703|ref|YP_686552.1| - 1e-13 51.3 0.1 3e-13 49.8 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|147919703|ref|YP_686552.1| - 1.8e-13 50.7 0.0 5e-13 49.3 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147919703|ref|YP_686552.1| - 2.9e-11 43.7 0.0 6.2e-11 42.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|147919703|ref|YP_686552.1| - 3.6e-07 30.3 0.0 7.5e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147919703|ref|YP_686552.1| - 0.00025 20.8 0.2 0.0011 18.7 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|147919703|ref|YP_686552.1| - 0.0064 16.0 0.8 0.27 10.6 0.3 2.4 1 1 1 2 2 2 1 Starch synthase catalytic domain GDE_N_bis PF14742.1 gi|147919704|ref|YP_686551.1| - 1.9e-50 170.9 0.0 2.8e-50 170.3 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|147919704|ref|YP_686551.1| - 3.9e-11 42.2 0.1 1e-10 40.9 0.1 1.7 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Trehalase PF01204.13 gi|147919704|ref|YP_686551.1| - 0.01 14.5 0.1 0.015 13.9 0.0 1.1 1 0 0 1 1 1 0 Trehalase Glyco_hydro_63 PF03200.11 gi|147919704|ref|YP_686551.1| - 0.11 10.3 1.4 0.22 9.3 0.1 1.8 2 0 0 2 2 2 0 Mannosyl oligosaccharide glucosidase Fibrinogen_aC PF12160.3 gi|147919705|ref|YP_686550.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Fibrinogen alpha C domain SF3b1 PF08920.5 gi|147919706|ref|YP_686548.1| - 0.026 14.5 0.0 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 Splicing factor 3B subunit 1 BIV_Env PF05858.7 gi|147919707|ref|YP_686547.1| - 0.039 11.9 0.4 0.043 11.7 0.3 1.0 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) DUF917 PF06032.7 gi|147919707|ref|YP_686547.1| - 0.18 10.3 0.4 0.27 9.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF917) Gram_pos_anchor PF00746.16 gi|147919707|ref|YP_686547.1| - 0.78 9.6 2.8 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Gram positive anchor CcoS PF03597.10 gi|147919707|ref|YP_686547.1| - 9.1 5.8 10.4 0.29 10.6 1.4 2.0 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type TfuA PF07812.7 gi|147919708|ref|YP_686546.1| - 1.3e-46 156.8 0.1 2.2e-46 156.1 0.1 1.3 1 0 0 1 1 1 1 TfuA-like protein DUF3253 PF11625.3 gi|147919708|ref|YP_686546.1| - 0.16 11.9 0.5 2.7 7.9 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3253) YcaO PF02624.11 gi|147919709|ref|YP_686545.1| - 2.4e-87 293.5 0.0 3.2e-87 293.1 0.0 1.2 1 0 0 1 1 1 1 YcaO-like family DUF2098 PF09871.4 gi|147919712|ref|YP_686542.1| - 1.8e-27 95.0 4.4 2.2e-27 94.8 3.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) HAS-barrel PF09378.5 gi|147919712|ref|YP_686542.1| - 0.0033 17.2 0.1 0.0043 16.9 0.1 1.5 1 1 0 1 1 1 1 HAS barrel domain HC2 PF07382.6 gi|147919713|ref|YP_686541.1| - 4.7e-05 23.3 59.0 4.7e-05 23.3 40.9 2.2 2 0 0 2 2 2 2 Histone H1-like nucleoprotein HC2 DUF1894 PF08979.6 gi|147919714|ref|YP_686540.1| - 5.7e-66 218.5 0.0 5e-35 119.4 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1894) DUF2114 PF09887.4 gi|147919715|ref|YP_686539.1| - 7.2e-226 749.6 2.8 8.4e-226 749.4 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) Phage_GPO PF05929.6 gi|147919715|ref|YP_686539.1| - 0.087 12.0 0.1 0.91 8.7 0.0 2.1 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase MtrH PF02007.13 gi|147919716|ref|YP_686538.1| - 1.3e-121 405.1 0.8 1.5e-121 404.9 0.5 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit MtrG PF04210.8 gi|147919717|ref|YP_686537.1| - 3e-18 65.2 0.5 3.5e-18 65.0 0.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G Med9 PF07544.8 gi|147919717|ref|YP_686537.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 MtrA PF04208.9 gi|147919718|ref|YP_686536.1| - 8.1e-75 250.1 1.3 1.1e-74 249.6 0.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|147919718|ref|YP_686536.1| - 1.5e-24 85.0 0.0 2.7e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrA PF04208.9 gi|147919719|ref|YP_686535.1| - 9.6e-75 249.8 1.3 1.3e-74 249.4 0.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.5 gi|147919719|ref|YP_686535.1| - 0.56 9.4 2.7 1.7 7.9 1.7 2.0 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrB PF05440.7 gi|147919720|ref|YP_686534.1| - 4.8e-24 84.2 0.0 5.4e-24 84.0 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrC PF04211.8 gi|147919721|ref|YP_686533.1| - 1.2e-59 201.5 37.3 6.7e-58 195.7 25.9 2.7 1 1 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C Phage_holin PF04688.8 gi|147919721|ref|YP_686533.1| - 3.7 7.1 9.9 0.13 11.8 0.9 2.9 3 0 0 3 3 3 0 Phage lysis protein, holin MtrD PF04207.7 gi|147919722|ref|YP_686532.1| - 8.6e-76 254.2 30.9 1.1e-54 185.2 9.5 2.0 1 1 1 2 2 2 2 Tetrahydromethanopterin S-methyltransferase, subunit D Herpes_glycop_H PF02489.11 gi|147919722|ref|YP_686532.1| - 1.2 7.0 7.2 1.7 6.5 5.0 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein H Trp_oprn_chp PF09534.5 gi|147919722|ref|YP_686532.1| - 7.1 6.1 11.9 11 5.5 0.1 2.8 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) MtrE PF04206.7 gi|147919723|ref|YP_686531.1| - 9.8e-104 346.1 15.9 1.1e-103 345.9 11.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MCR_alpha_N PF02745.10 gi|147919724|ref|YP_686530.1| - 2.9e-139 462.7 1.5 3.9e-139 462.3 1.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.12 gi|147919724|ref|YP_686530.1| - 5.3e-69 230.0 4.3 1.1e-68 229.1 3.0 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain BofC_C PF08955.5 gi|147919724|ref|YP_686530.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 BofC C-terminal domain MCR_gamma PF02240.11 gi|147919725|ref|YP_686529.1| - 1.1e-122 407.9 0.0 1.2e-122 407.7 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_C PF04609.7 gi|147919726|ref|YP_686528.1| - 2.3e-39 134.8 5.5 3.8e-35 120.9 3.8 3.0 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_D PF02505.9 gi|147919727|ref|YP_686527.1| - 2.4e-35 121.3 0.2 3e-35 121.0 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_beta PF02241.13 gi|147919728|ref|YP_686526.1| - 5.2e-128 425.6 2.1 7e-128 425.2 1.5 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.10 gi|147919728|ref|YP_686526.1| - 6.3e-75 250.6 1.2 6.3e-75 250.6 0.9 2.0 2 0 0 2 2 2 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain UPF0004 PF00919.15 gi|147919729|ref|YP_686525.1| - 6.4e-17 61.1 0.0 1.1e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|147919729|ref|YP_686525.1| - 1.9e-16 60.6 0.0 3.2e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.15 gi|147919729|ref|YP_686525.1| - 2.1e-10 40.2 0.1 4.9e-10 39.0 0.1 1.7 1 0 0 1 1 1 1 TRAM domain Fer2 PF00111.22 gi|147919729|ref|YP_686525.1| - 0.03 14.0 0.1 0.069 12.9 0.0 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fumerase PF05681.9 gi|147919730|ref|YP_686524.1| - 2.4e-93 312.1 0.2 2.6e-93 311.9 0.2 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|147919731|ref|YP_686523.1| - 4.6e-51 172.8 0.1 5.1e-51 172.7 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF726 PF05277.7 gi|147919731|ref|YP_686523.1| - 0.02 13.7 0.1 0.031 13.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF726) FAD_binding_3 PF01494.14 gi|147919734|ref|YP_686520.1| - 5.9e-20 71.6 2.0 5.8e-12 45.3 0.1 2.8 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|147919734|ref|YP_686520.1| - 6.7e-12 44.9 4.8 3.7e-07 29.3 0.5 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|147919734|ref|YP_686520.1| - 7.8e-12 44.9 6.5 3.8e-11 42.7 4.6 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|147919734|ref|YP_686520.1| - 1.3e-11 43.9 3.0 2.9e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|147919734|ref|YP_686520.1| - 6.8e-10 39.1 1.8 4.6e-09 36.4 1.3 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|147919734|ref|YP_686520.1| - 1.3e-08 33.8 2.6 1.5e-07 30.2 0.0 3.0 3 1 0 3 3 3 1 HI0933-like protein GIDA PF01134.17 gi|147919734|ref|YP_686520.1| - 3.4e-08 32.7 0.7 6.6e-08 31.8 0.5 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|147919734|ref|YP_686520.1| - 5.1e-07 29.6 0.2 2.2e-06 27.5 0.2 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|147919734|ref|YP_686520.1| - 5.5e-07 28.5 0.1 0.011 14.3 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|147919734|ref|YP_686520.1| - 2.3e-06 26.7 0.6 0.0014 17.5 0.3 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.12 gi|147919734|ref|YP_686520.1| - 2.9e-06 26.5 2.2 2.7e-05 23.3 1.5 2.2 1 1 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|147919734|ref|YP_686520.1| - 0.002 18.4 3.2 0.2 12.0 0.2 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|147919734|ref|YP_686520.1| - 0.0021 18.1 0.1 0.0047 17.0 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|147919734|ref|YP_686520.1| - 0.044 12.6 0.0 0.077 11.8 0.0 1.5 1 0 0 1 1 1 0 Squalene epoxidase GDI PF00996.13 gi|147919734|ref|YP_686520.1| - 0.076 11.3 0.1 0.41 8.9 0.0 1.9 2 0 0 2 2 2 0 GDP dissociation inhibitor SPAN PF02510.9 gi|147919734|ref|YP_686520.1| - 0.08 11.9 2.8 0.15 11.0 0.5 2.0 2 0 0 2 2 2 0 Surface presentation of antigens protein XdhC_C PF13478.1 gi|147919734|ref|YP_686520.1| - 0.097 12.9 0.1 2.1 8.6 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|147919734|ref|YP_686520.1| - 0.11 12.1 0.1 0.11 12.1 0.1 2.5 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4 PF00037.22 gi|147919735|ref|YP_686519.1| - 2.1e-12 46.0 14.7 2.6e-06 26.7 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919735|ref|YP_686519.1| - 2.8e-11 43.6 23.4 9.4e-08 32.3 9.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919735|ref|YP_686519.1| - 3.7e-10 39.2 12.7 4.8e-06 26.2 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919735|ref|YP_686519.1| - 4.5e-10 39.1 25.4 6.9e-07 28.9 9.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919735|ref|YP_686519.1| - 1.7e-09 38.2 8.7 0.00026 21.6 1.0 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|147919735|ref|YP_686519.1| - 2.3e-08 34.1 8.8 0.00048 20.3 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919735|ref|YP_686519.1| - 4.6e-08 32.5 13.7 0.00012 21.7 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919735|ref|YP_686519.1| - 3.5e-06 26.7 10.0 6.4e-06 25.9 6.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919735|ref|YP_686519.1| - 4.5e-06 26.5 13.9 0.00077 19.5 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919735|ref|YP_686519.1| - 7.1e-06 25.9 14.0 0.0017 18.3 10.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919735|ref|YP_686519.1| - 7.5e-06 26.1 9.3 0.0046 17.2 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919735|ref|YP_686519.1| - 3.7e-05 23.9 19.0 0.0031 17.9 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147919735|ref|YP_686519.1| - 7.7e-05 23.1 7.7 0.0028 18.1 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|147919735|ref|YP_686519.1| - 0.00014 22.2 12.1 0.0072 16.7 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147919735|ref|YP_686519.1| - 0.0021 18.4 11.2 0.1 12.9 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain MSSP PF03940.8 gi|147919735|ref|YP_686519.1| - 1.1 8.6 12.3 0.84 9.0 2.4 2.1 2 0 0 2 2 2 0 Male specific sperm protein zf-CXXC PF02008.15 gi|147919735|ref|YP_686519.1| - 1.6 8.5 11.2 4.5 7.1 1.8 2.2 2 0 0 2 2 2 0 CXXC zinc finger domain Stig1 PF04885.8 gi|147919735|ref|YP_686519.1| - 1.8 8.7 10.9 2.7 8.2 7.5 1.3 1 1 0 1 1 1 0 Stigma-specific protein, Stig1 zf-BED PF02892.10 gi|147919735|ref|YP_686519.1| - 5.7 6.7 9.0 6.2 6.6 0.5 2.2 2 0 0 2 2 2 0 BED zinc finger TrmB PF01978.14 gi|147919736|ref|YP_686518.1| - 1e-05 25.1 0.0 2.1e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|147919736|ref|YP_686518.1| - 2.8e-05 24.3 0.1 7.5e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|147919736|ref|YP_686518.1| - 7.5e-05 22.3 0.0 0.00014 21.4 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|147919736|ref|YP_686518.1| - 9.5e-05 21.9 0.1 0.00023 20.7 0.0 1.7 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.12 gi|147919736|ref|YP_686518.1| - 0.0013 18.1 0.0 0.0025 17.2 0.0 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|147919736|ref|YP_686518.1| - 0.0021 17.4 1.6 0.0046 16.3 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|147919736|ref|YP_686518.1| - 0.0024 17.9 0.2 0.004 17.2 0.2 1.5 1 1 0 1 1 1 1 Penicillinase repressor HTH_Crp_2 PF13545.1 gi|147919736|ref|YP_686518.1| - 0.0028 17.3 0.0 0.0058 16.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|147919736|ref|YP_686518.1| - 0.0084 15.7 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|147919736|ref|YP_686518.1| - 0.02 14.9 0.0 0.054 13.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|147919736|ref|YP_686518.1| - 0.029 13.9 0.1 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|147919736|ref|YP_686518.1| - 0.034 13.7 0.0 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain Sec10 PF07393.6 gi|147919736|ref|YP_686518.1| - 0.04 12.0 0.0 0.054 11.6 0.0 1.1 1 0 0 1 1 1 0 Exocyst complex component Sec10 GntR PF00392.16 gi|147919736|ref|YP_686518.1| - 0.041 13.3 0.0 0.091 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Complex1_LYR_2 PF13233.1 gi|147919736|ref|YP_686518.1| - 0.13 12.7 0.7 0.18 12.3 0.5 1.3 1 1 0 1 1 1 0 Complex1_LYR-like HTH_36 PF13730.1 gi|147919736|ref|YP_686518.1| - 0.14 12.3 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LrgB PF04172.11 gi|147919738|ref|YP_686516.1| - 0.033 13.3 0.7 0.042 13.0 0.5 1.2 1 0 0 1 1 1 0 LrgB-like family DPM3 PF08285.6 gi|147919738|ref|YP_686516.1| - 0.044 13.6 0.9 0.052 13.3 0.6 1.2 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) PgpA PF04608.8 gi|147919738|ref|YP_686516.1| - 0.061 13.1 2.6 0.055 13.2 1.2 1.4 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A YqhR PF11085.3 gi|147919738|ref|YP_686516.1| - 0.061 12.8 2.1 0.068 12.7 1.4 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2721 PF11026.3 gi|147919738|ref|YP_686516.1| - 1.3 8.6 10.5 1.6 8.4 7.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) MFS_1 PF07690.11 gi|147919738|ref|YP_686516.1| - 2.9 6.5 11.4 3.3 6.3 7.9 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily SUR7 PF06687.7 gi|147919738|ref|YP_686516.1| - 5.3 6.5 9.4 6.2 6.3 6.5 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF1772 PF08592.6 gi|147919739|ref|YP_686515.1| - 0.14 11.8 5.2 0.22 11.2 3.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Thymidylate_kin PF02223.12 gi|147919740|ref|YP_686514.1| - 1.8e-47 161.1 0.2 2.1e-47 160.9 0.1 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|147919740|ref|YP_686514.1| - 3.4e-07 30.3 0.0 4.2e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain PPK2 PF03976.9 gi|147919740|ref|YP_686514.1| - 0.00047 19.5 0.0 0.00089 18.6 0.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) MobB PF03205.9 gi|147919740|ref|YP_686514.1| - 0.004 16.8 0.0 0.0087 15.7 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|147919740|ref|YP_686514.1| - 0.0073 16.1 0.0 0.012 15.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|147919740|ref|YP_686514.1| - 0.0092 16.1 0.0 0.045 13.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|147919740|ref|YP_686514.1| - 0.011 16.0 0.0 0.016 15.5 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.1 gi|147919740|ref|YP_686514.1| - 0.019 15.2 0.1 0.04 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|147919740|ref|YP_686514.1| - 0.04 14.7 0.3 0.089 13.6 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|147919740|ref|YP_686514.1| - 0.044 13.3 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|147919740|ref|YP_686514.1| - 0.1 11.1 0.2 0.16 10.5 0.1 1.4 1 1 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MazG PF03819.12 gi|147919742|ref|YP_686512.1| - 3.1e-14 52.6 0.2 4.7e-14 52.0 0.0 1.3 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|147919742|ref|YP_686512.1| - 2.3e-05 24.5 0.3 2.9e-05 24.2 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Blo-t-5 PF11642.3 gi|147919742|ref|YP_686512.1| - 0.06 13.1 0.3 0.067 12.9 0.2 1.1 1 0 0 1 1 1 0 Mite allergen Blo t 5 Mt_ATP-synt_B PF05405.9 gi|147919742|ref|YP_686512.1| - 0.12 11.8 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) His_biosynth PF00977.16 gi|147919743|ref|YP_686511.1| - 2.1e-85 285.6 0.7 2.4e-85 285.4 0.5 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|147919743|ref|YP_686511.1| - 7e-05 21.8 0.1 0.0072 15.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|147919743|ref|YP_686511.1| - 0.00012 21.2 0.7 0.19 10.7 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|147919743|ref|YP_686511.1| - 0.00024 20.3 5.1 0.097 11.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|147919743|ref|YP_686511.1| - 0.0013 17.9 0.5 0.22 10.6 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|147919743|ref|YP_686511.1| - 0.0016 17.7 1.7 0.0031 16.8 0.2 2.1 2 1 1 3 3 3 1 PcrB family IMPDH PF00478.20 gi|147919743|ref|YP_686511.1| - 0.0055 15.6 1.7 0.029 13.2 0.0 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|147919743|ref|YP_686511.1| - 0.022 13.8 1.4 0.19 10.7 0.2 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.16 gi|147919743|ref|YP_686511.1| - 0.4 9.6 2.8 3.4 6.5 0.1 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase SGL PF08450.7 gi|147919744|ref|YP_686510.1| - 5.4e-06 25.9 0.5 0.21 10.9 0.1 3.8 2 2 2 4 4 4 2 SMP-30/Gluconolaconase/LRE-like region Lactonase PF10282.4 gi|147919744|ref|YP_686510.1| - 2.4e-05 23.6 0.1 0.00042 19.5 0.0 2.3 1 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller PQQ_2 PF13360.1 gi|147919744|ref|YP_686510.1| - 0.00016 21.2 2.2 0.11 11.9 0.1 2.9 1 1 1 3 3 3 3 PQQ-like domain NHL PF01436.16 gi|147919744|ref|YP_686510.1| - 0.00074 19.3 12.6 0.062 13.2 0.1 5.2 5 1 1 6 6 6 2 NHL repeat PQQ PF01011.16 gi|147919744|ref|YP_686510.1| - 0.0016 17.8 0.7 0.05 13.1 0.0 3.3 4 0 0 4 4 4 1 PQQ enzyme repeat Cytochrom_D1 PF02239.11 gi|147919744|ref|YP_686510.1| - 0.002 16.4 0.6 0.021 13.1 0.0 2.5 1 1 1 2 2 2 1 Cytochrome D1 heme domain Arylesterase PF01731.15 gi|147919744|ref|YP_686510.1| - 0.021 14.7 1.4 0.72 9.8 0.0 3.6 4 1 1 5 5 5 0 Arylesterase ATP-synt_D PF01813.12 gi|147919746|ref|YP_686508.1| - 6.2e-61 205.3 12.6 6.9e-61 205.2 8.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D ATP-synt_ab PF00006.20 gi|147919747|ref|YP_686507.1| - 1e-59 201.6 0.0 1.4e-59 201.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|147919747|ref|YP_686507.1| - 3.2e-16 59.8 0.1 6.3e-16 58.8 0.1 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|147919747|ref|YP_686507.1| - 3.5e-12 46.3 0.3 7.5e-12 45.2 0.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|147919747|ref|YP_686507.1| - 0.0054 16.5 0.2 0.02 14.8 0.2 1.9 1 0 0 1 1 1 1 HAS barrel domain DUF561 PF04481.7 gi|147919747|ref|YP_686507.1| - 0.092 11.6 0.1 0.43 9.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF561) ATP-synt_ab PF00006.20 gi|147919748|ref|YP_686506.1| - 7.7e-98 326.2 0.0 1.2e-97 325.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|147919748|ref|YP_686506.1| - 9.4e-19 67.9 5.2 2.4e-18 66.6 3.6 1.7 1 1 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|147919748|ref|YP_686506.1| - 3.3e-14 52.8 2.5 3.3e-14 52.8 1.7 2.4 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|147919748|ref|YP_686506.1| - 0.0031 17.5 1.2 2.7 8.1 0.1 2.5 2 0 0 2 2 2 2 Peptidase family M23 DUF1932 PF09130.6 gi|147919748|ref|YP_686506.1| - 0.0091 15.7 2.4 0.56 9.9 0.2 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1932) AAA_22 PF13401.1 gi|147919748|ref|YP_686506.1| - 0.031 14.4 0.0 0.09 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain ATP-synt_F PF01990.12 gi|147919749|ref|YP_686505.1| - 3.7e-19 68.9 0.2 4.3e-19 68.6 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_AC39 PF01992.11 gi|147919750|ref|YP_686504.1| - 8.3e-86 288.1 3.5 9.4e-86 287.9 2.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.13 gi|147919751|ref|YP_686503.1| - 3.1e-26 91.8 16.5 2.5e-25 88.9 11.5 1.9 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit TMEM51 PF15345.1 gi|147919751|ref|YP_686503.1| - 0.074 12.7 2.5 0.1 12.2 1.7 1.1 1 0 0 1 1 1 0 Transmembrane protein 51 DUF3552 PF12072.3 gi|147919751|ref|YP_686503.1| - 0.082 12.1 17.6 0.12 11.5 12.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) LCAT PF02450.10 gi|147919751|ref|YP_686503.1| - 0.099 11.5 0.1 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase VAD1-2 PF15310.1 gi|147919751|ref|YP_686503.1| - 0.15 11.7 4.3 0.17 11.4 3.0 1.1 1 0 0 1 1 1 0 Vitamin A-deficiency (VAD) rat model signalling V_ATPase_I PF01496.14 gi|147919751|ref|YP_686503.1| - 0.16 9.7 1.2 0.16 9.7 0.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ATP-synt_B PF00430.13 gi|147919751|ref|YP_686503.1| - 0.71 9.6 20.6 0.9 9.3 13.8 1.6 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) ATP-synt_C PF00137.16 gi|147919752|ref|YP_686502.1| - 4.4e-16 58.5 16.9 4.8e-16 58.4 11.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit C DUF3186 PF11382.3 gi|147919752|ref|YP_686502.1| - 0.55 9.3 2.8 0.68 9.0 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) V_ATPase_I PF01496.14 gi|147919753|ref|YP_686501.1| - 1.3e-85 287.8 31.3 4e-56 190.3 11.0 3.9 1 1 0 2 2 2 2 V-type ATPase 116kDa subunit family PspA_IM30 PF04012.7 gi|147919753|ref|YP_686501.1| - 0.041 13.2 2.5 1.3 8.3 0.1 2.1 2 0 0 2 2 2 0 PspA/IM30 family Spc7 PF08317.6 gi|147919753|ref|YP_686501.1| - 0.12 11.0 3.6 0.035 12.7 0.2 1.6 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF4140 PF13600.1 gi|147919753|ref|YP_686501.1| - 0.84 10.1 5.1 0.34 11.3 0.4 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|147919753|ref|YP_686501.1| - 5.4 6.8 12.4 16 5.2 4.5 2.3 2 0 0 2 2 2 0 Prefoldin subunit SPC12 PF06645.8 gi|147919753|ref|YP_686501.1| - 9.5 6.1 7.3 2.4 8.0 0.3 2.9 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) ATP-synt_B PF00430.13 gi|147919754|ref|YP_686500.1| - 9.6e-05 22.1 27.7 0.00095 18.9 15.3 2.2 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|147919754|ref|YP_686500.1| - 0.99 9.1 10.4 1.5 8.5 7.2 1.3 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Mnd1 PF03962.10 gi|147919754|ref|YP_686500.1| - 2.6 7.6 7.9 3.7 7.1 5.5 1.2 1 0 0 1 1 1 0 Mnd1 family V-ATPase_G PF03179.10 gi|147919754|ref|YP_686500.1| - 3.4 8.0 20.0 5 7.4 13.9 1.2 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit CMV_1a PF12467.3 gi|147919754|ref|YP_686500.1| - 5.6 7.2 9.3 7.6 6.8 6.5 1.1 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein family DHHA1 PF02272.14 gi|147919755|ref|YP_686499.1| - 8e-11 41.4 0.0 1.6e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|147919755|ref|YP_686499.1| - 1.9e-05 24.3 0.2 8.1e-05 22.3 0.1 1.9 1 1 0 1 1 1 1 DHH family GTP_EFTU PF00009.22 gi|147919756|ref|YP_686498.1| - 3.3e-43 147.3 0.2 6.5e-43 146.3 0.1 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|147919756|ref|YP_686498.1| - 8.4e-32 109.0 0.3 1.9e-31 107.9 0.2 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|147919756|ref|YP_686498.1| - 0.00013 22.0 1.1 0.00039 20.4 0.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|147919756|ref|YP_686498.1| - 0.0023 17.8 0.0 0.0047 16.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|147919756|ref|YP_686498.1| - 0.0066 15.9 2.6 2.6 7.5 0.0 3.2 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|147919756|ref|YP_686498.1| - 0.051 12.8 0.6 9.5 5.4 0.0 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B Nop10p PF04135.7 gi|147919756|ref|YP_686498.1| - 2.1 8.1 4.6 4 7.2 3.2 1.4 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family Fcf1 PF04900.7 gi|147919757|ref|YP_686497.1| - 1.2e-06 28.5 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Fcf1 SHS2_Rpb7-N PF03876.12 gi|147919758|ref|YP_686496.1| - 7.7e-20 70.7 0.2 1.3e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|147919758|ref|YP_686496.1| - 1.5e-11 44.1 0.1 3.1e-11 43.1 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|147919758|ref|YP_686496.1| - 0.071 13.3 0.1 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 DUF4632 PF15451.1 gi|147919760|ref|YP_686494.1| - 0.13 12.2 0.5 0.16 11.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4632) Lactamase_B_2 PF12706.2 gi|147919761|ref|YP_686493.1| - 0.00012 21.6 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147919761|ref|YP_686493.1| - 0.0012 18.5 0.2 0.0026 17.4 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily MEDS PF14417.1 gi|147919762|ref|YP_686492.1| - 1.3e-67 226.5 0.0 4e-67 225.0 0.0 1.7 1 1 1 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|147919762|ref|YP_686492.1| - 2.6e-21 75.3 0.0 5e-20 71.2 0.0 2.4 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|147919762|ref|YP_686492.1| - 0.0081 16.1 0.1 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|147919762|ref|YP_686492.1| - 0.015 15.1 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|147919762|ref|YP_686492.1| - 0.017 14.8 0.0 0.048 13.3 0.0 1.7 1 0 0 1 1 1 0 GHKL domain BcrAD_BadFG PF01869.15 gi|147919763|ref|YP_686491.1| - 2.3e-56 191.0 7.1 2.7e-56 190.8 4.9 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.20 gi|147919763|ref|YP_686491.1| - 0.00011 21.8 0.0 0.00017 21.1 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family CmcH_NodU PF02543.10 gi|147919763|ref|YP_686491.1| - 0.00032 19.9 0.0 0.00044 19.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyltransferase FGGY_C PF02782.11 gi|147919763|ref|YP_686491.1| - 0.00054 19.6 1.3 0.0012 18.4 0.9 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|147919763|ref|YP_686491.1| - 0.0026 17.5 2.5 0.027 14.2 0.2 2.3 2 0 0 2 2 2 1 Cell division protein FtsA MreB_Mbl PF06723.8 gi|147919763|ref|YP_686491.1| - 0.035 12.6 3.1 1.1 7.7 0.1 2.3 2 0 0 2 2 2 0 MreB/Mbl protein PilM_2 PF11104.3 gi|147919763|ref|YP_686491.1| - 0.068 12.0 0.1 0.43 9.4 0.0 2.2 2 1 0 2 2 2 0 Type IV pilus assembly protein PilM; HGD-D PF06050.8 gi|147919764|ref|YP_686490.1| - 1.3e-108 362.9 0.1 1.5e-108 362.7 0.1 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Cupin_2 PF07883.6 gi|147919765|ref|YP_686489.1| - 2.1e-16 59.1 0.1 3.1e-16 58.6 0.1 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|147919765|ref|YP_686489.1| - 1.6e-10 40.7 0.1 2.1e-10 40.4 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|147919765|ref|YP_686489.1| - 1.3e-08 34.3 0.0 1.8e-08 33.9 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|147919765|ref|YP_686489.1| - 4.3e-05 22.8 0.0 6.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|147919765|ref|YP_686489.1| - 0.00013 21.6 0.0 0.00015 21.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase ARD PF03079.9 gi|147919765|ref|YP_686489.1| - 0.00047 20.1 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 ARD/ARD' family Ectoine_synth PF06339.7 gi|147919765|ref|YP_686489.1| - 0.00064 19.6 0.0 0.00081 19.3 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_6 PF12852.2 gi|147919765|ref|YP_686489.1| - 0.0007 19.2 0.0 0.00084 18.9 0.0 1.1 1 0 0 1 1 1 1 Cupin Auxin_BP PF02041.11 gi|147919765|ref|YP_686489.1| - 0.0025 17.2 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 Auxin binding protein EutQ PF06249.7 gi|147919765|ref|YP_686489.1| - 0.034 13.6 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ GPI PF06560.6 gi|147919765|ref|YP_686489.1| - 0.056 12.4 0.3 0.13 11.2 0.2 1.8 1 1 1 2 2 2 0 Glucose-6-phosphate isomerase (GPI) DUF1637 PF07847.7 gi|147919765|ref|YP_686489.1| - 0.092 12.1 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Lactamase_B PF00753.22 gi|147919766|ref|YP_686488.1| - 2.5e-10 40.3 0.1 3.8e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147919766|ref|YP_686488.1| - 0.00039 20.0 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|147919766|ref|YP_686488.1| - 0.028 14.1 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CbiX PF01903.12 gi|147919767|ref|YP_686487.1| - 6.3e-28 96.9 0.0 7.3e-28 96.7 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|147919767|ref|YP_686487.1| - 3.3e-06 26.3 0.0 7.1e-06 25.3 0.0 1.4 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) Ferrochelatase PF00762.14 gi|147919767|ref|YP_686487.1| - 2.9e-05 23.2 0.0 4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Ferrochelatase DUF1462 PF07315.6 gi|147919767|ref|YP_686487.1| - 0.048 13.6 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) Mur_ligase_M PF08245.7 gi|147919768|ref|YP_686486.1| - 2.6e-07 30.8 0.0 3.9e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Mur ligase middle domain DUF1069 PF06370.6 gi|147919768|ref|YP_686486.1| - 0.029 13.7 0.0 0.073 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1069) Hydrolase_4 PF12146.3 gi|147919768|ref|YP_686486.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Oxidored_nitro PF00148.14 gi|147919769|ref|YP_686485.1| - 3.7e-17 62.0 0.3 5.3e-17 61.5 0.2 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Peptidase_M28 PF04389.12 gi|147919769|ref|YP_686485.1| - 0.1 12.3 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Peptidase family M28 Fer4_NifH PF00142.13 gi|147919770|ref|YP_686484.1| - 1.6e-94 316.1 1.1 2e-94 315.8 0.8 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|147919770|ref|YP_686484.1| - 6.9e-12 45.1 0.0 1e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|147919770|ref|YP_686484.1| - 2.9e-07 29.8 0.5 2.9e-07 29.8 0.4 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|147919770|ref|YP_686484.1| - 1.4e-06 28.3 0.0 3.2e-06 27.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|147919770|ref|YP_686484.1| - 7.5e-05 21.6 0.2 0.00011 21.0 0.1 1.3 1 0 0 1 1 1 1 ArgK protein MipZ PF09140.6 gi|147919770|ref|YP_686484.1| - 0.00012 21.2 0.4 0.00074 18.6 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ SRP54 PF00448.17 gi|147919770|ref|YP_686484.1| - 0.00048 19.6 0.3 0.00086 18.8 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|147919770|ref|YP_686484.1| - 0.011 15.2 0.4 0.02 14.3 0.1 1.5 2 0 0 2 2 2 0 AAA-like domain ATP_bind_1 PF03029.12 gi|147919770|ref|YP_686484.1| - 0.015 14.8 0.9 3.2 7.2 0.2 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF87 PF01935.12 gi|147919770|ref|YP_686484.1| - 0.031 14.0 0.4 0.29 10.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|147919770|ref|YP_686484.1| - 0.04 13.4 0.1 0.057 12.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|147919770|ref|YP_686484.1| - 0.042 14.0 0.0 0.083 13.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|147919770|ref|YP_686484.1| - 0.051 12.4 0.3 0.076 11.8 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.1 gi|147919770|ref|YP_686484.1| - 0.057 12.8 0.2 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|147919770|ref|YP_686484.1| - 0.063 12.8 0.1 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|147919770|ref|YP_686484.1| - 0.068 13.3 0.1 0.27 11.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|147919770|ref|YP_686484.1| - 0.076 12.9 0.1 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain CPSase_L_chain PF00289.17 gi|147919770|ref|YP_686484.1| - 0.077 13.1 0.0 9.7 6.3 0.0 2.9 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain YhjQ PF06564.7 gi|147919770|ref|YP_686484.1| - 0.12 11.7 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein FtsK_SpoIIIE PF01580.13 gi|147919770|ref|YP_686484.1| - 0.12 11.8 0.1 0.17 11.3 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MobB PF03205.9 gi|147919770|ref|YP_686484.1| - 0.14 11.8 0.3 0.27 10.9 0.2 1.6 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B GATase_3 PF07685.9 gi|147919771|ref|YP_686483.1| - 6.1e-33 113.6 0.2 1e-32 112.9 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|147919771|ref|YP_686483.1| - 4.2e-24 85.0 0.1 7e-24 84.3 0.1 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|147919771|ref|YP_686483.1| - 1.1e-16 61.0 0.9 6.5e-13 48.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain SNO PF01174.14 gi|147919771|ref|YP_686483.1| - 0.0017 17.9 0.0 0.0058 16.2 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Apolipoprotein PF01442.13 gi|147919772|ref|YP_686482.1| - 4.5e-38 130.8 129.0 4.8e-28 98.0 15.1 11.1 3 2 5 9 9 9 5 Apolipoprotein A1/A4/E domain AAA_13 PF13166.1 gi|147919772|ref|YP_686482.1| - 3.5e-07 29.1 19.1 1.7e-05 23.5 4.0 8.0 1 1 10 11 11 11 8 AAA domain Spc7 PF08317.6 gi|147919772|ref|YP_686482.1| - 1.4e-06 27.1 0.9 1.4e-06 27.1 0.6 12.9 3 1 8 13 13 13 6 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|147919772|ref|YP_686482.1| - 0.00039 20.2 19.2 0.0043 16.8 1.2 14.6 4 2 13 17 17 17 9 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|147919772|ref|YP_686482.1| - 0.0008 18.6 9.8 0.0008 18.6 6.8 11.6 3 1 8 12 12 12 5 Reovirus sigma C capsid protein CENP-F_leu_zip PF10473.4 gi|147919772|ref|YP_686482.1| - 0.0015 18.3 0.5 0.0015 18.3 0.4 15.7 2 1 14 19 19 19 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TPR_MLP1_2 PF07926.7 gi|147919772|ref|YP_686482.1| - 0.0068 16.1 3.4 0.0068 16.1 2.3 14.5 5 2 10 17 17 17 3 TPR/MLP1/MLP2-like protein LPP PF04728.8 gi|147919772|ref|YP_686482.1| - 0.0074 16.0 1.0 0.0074 16.0 0.7 10.7 9 2 1 11 11 11 2 Lipoprotein leucine-zipper Bacillus_HBL PF05791.6 gi|147919772|ref|YP_686482.1| - 0.025 13.9 0.1 0.023 14.0 3.5 14.0 5 2 11 16 16 16 0 Bacillus haemolytic enterotoxin (HBL) Col_cuticle_N PF01484.12 gi|147919772|ref|YP_686482.1| - 0.79 9.4 9.9 20 4.9 0.1 7.0 6 2 2 9 9 9 0 Nematode cuticle collagen N-terminal domain Apolipoprotein PF01442.13 gi|147919773|ref|YP_686481.1| - 1.8e-05 24.3 18.2 0.00019 20.9 7.8 2.2 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain NAAA-beta PF15508.1 gi|147919773|ref|YP_686481.1| - 0.0017 18.6 7.4 0.0056 16.9 0.2 3.4 1 1 0 3 3 3 1 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Choline_kinase PF01633.15 gi|147919773|ref|YP_686481.1| - 0.0033 17.0 5.2 0.14 11.7 0.2 2.9 1 1 2 3 3 3 2 Choline/ethanolamine kinase Phasin_2 PF09361.5 gi|147919773|ref|YP_686481.1| - 0.092 12.7 21.3 1.9 8.5 4.2 4.2 1 1 3 4 4 4 0 Phasin protein TipAS PF07739.8 gi|147919773|ref|YP_686481.1| - 0.13 12.6 9.3 1.7 9.0 0.7 2.8 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain DUF1451 PF07295.6 gi|147919773|ref|YP_686481.1| - 0.18 11.5 18.3 0.64 9.7 1.0 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF1451) ASL_C2 PF14698.1 gi|147919773|ref|YP_686481.1| - 0.28 11.2 9.7 8.3 6.5 0.1 4.0 3 1 1 4 4 4 0 Argininosuccinate lyase C-terminal DUF4319 PF14203.1 gi|147919773|ref|YP_686481.1| - 0.58 9.7 7.0 23 4.6 0.4 4.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4319) HisKA_3 PF07730.8 gi|147919773|ref|YP_686481.1| - 0.95 9.8 18.6 7.7 6.9 0.4 6.1 2 1 4 6 6 6 0 Histidine kinase GIDA_assoc_3 PF13932.1 gi|147919773|ref|YP_686481.1| - 2.8 8.0 14.2 3.7 7.6 0.7 4.6 2 1 1 5 5 5 0 GidA associated domain 3 SASP_gamma PF04259.9 gi|147919773|ref|YP_686481.1| - 7.9 6.6 17.7 0.72 10.0 1.3 3.3 1 1 1 2 2 2 0 Small, acid-soluble spore protein, gamma-type LTXXQ PF07813.7 gi|147919773|ref|YP_686481.1| - 9.1 6.8 17.6 4.8 7.6 2.1 3.8 1 1 1 3 3 3 0 LTXXQ motif family protein Ribosomal_L16 PF00252.13 gi|147919774|ref|YP_686480.1| - 9.1e-36 122.5 0.1 1e-35 122.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e THUMP PF02926.12 gi|147919774|ref|YP_686480.1| - 0.048 13.5 0.0 0.46 10.3 0.0 1.9 2 0 0 2 2 2 0 THUMP domain DUF2007 PF09413.5 gi|147919774|ref|YP_686480.1| - 0.061 13.1 0.0 0.18 11.6 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) eIF-5_eIF-2B PF01873.12 gi|147919775|ref|YP_686479.1| - 2.6e-38 130.5 0.0 4e-38 129.8 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|147919775|ref|YP_686479.1| - 2.7e-11 43.0 0.6 6e-11 41.9 0.4 1.6 1 0 0 1 1 1 1 TRAM domain Zn-ribbon_8 PF09723.5 gi|147919775|ref|YP_686479.1| - 0.0012 18.7 1.2 0.0023 17.8 0.8 1.6 1 0 0 1 1 1 1 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|147919775|ref|YP_686479.1| - 0.08 12.4 3.1 2.2 7.8 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_S3_C PF00189.15 gi|147919775|ref|YP_686479.1| - 0.11 12.6 0.6 1.5 9.1 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S3, C-terminal domain DUF2387 PF09526.5 gi|147919775|ref|YP_686479.1| - 0.21 11.5 1.5 0.51 10.3 1.1 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) ZF-HD_dimer PF04770.7 gi|147919775|ref|YP_686479.1| - 0.24 11.4 2.1 0.71 9.9 1.4 1.8 1 1 0 1 1 1 0 ZF-HD protein dimerisation region Translat_reg PF01818.12 gi|147919776|ref|YP_686478.1| - 0.081 12.4 0.0 0.098 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage translational regulator TonB_C PF03544.9 gi|147919776|ref|YP_686478.1| - 0.081 13.1 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Gram-negative bacterial TonB protein C-terminal TACC PF05010.9 gi|147919777|ref|YP_686477.1| - 0.021 14.6 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) Tetraspannin PF00335.15 gi|147919777|ref|YP_686477.1| - 0.11 11.6 0.1 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Tetraspanin family DUF4349 PF14257.1 gi|147919777|ref|YP_686477.1| - 0.12 11.5 0.5 1 8.5 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) IncA PF04156.9 gi|147919777|ref|YP_686477.1| - 0.79 9.2 3.1 17 4.9 2.4 2.3 2 0 0 2 2 2 0 IncA protein Fer4 PF00037.22 gi|147919778|ref|YP_686476.1| - 1.6e-10 40.0 14.8 5e-05 22.7 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919778|ref|YP_686476.1| - 1.7e-08 34.6 10.8 1.7e-08 34.6 7.5 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919778|ref|YP_686476.1| - 8.9e-08 31.6 14.5 0.00027 20.6 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147919778|ref|YP_686476.1| - 2.1e-07 30.6 9.8 2.1e-07 30.6 6.8 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919778|ref|YP_686476.1| - 1e-05 25.1 2.0 1e-05 25.1 1.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919778|ref|YP_686476.1| - 0.0001 22.4 13.3 0.0001 22.4 9.2 3.1 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919778|ref|YP_686476.1| - 0.01 16.5 2.7 0.01 16.5 1.9 3.0 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147919778|ref|YP_686476.1| - 0.012 15.4 0.7 0.012 15.4 0.5 2.8 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919778|ref|YP_686476.1| - 0.013 15.4 13.6 0.013 15.4 9.4 3.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919778|ref|YP_686476.1| - 0.072 13.6 0.6 0.072 13.6 0.4 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain HTH_45 PF14947.1 gi|147919779|ref|YP_686475.1| - 2e-05 24.3 0.2 3.1e-05 23.6 0.2 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix UPF0066 PF01980.11 gi|147919781|ref|YP_686473.1| - 4.8e-36 123.3 0.0 6e-36 123.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 dUTPase PF00692.14 gi|147919782|ref|YP_686472.1| - 5.2e-11 42.1 0.0 1.6e-10 40.5 0.0 1.6 2 0 0 2 2 2 1 dUTPase AhpC-TSA PF00578.16 gi|147919783|ref|YP_686471.1| - 2.4e-31 108.0 0.0 2.7e-31 107.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147919783|ref|YP_686471.1| - 4.7e-18 65.1 0.0 5.6e-18 64.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|147919783|ref|YP_686471.1| - 7.5e-08 32.3 0.0 1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.7 gi|147919783|ref|YP_686471.1| - 0.0014 18.0 0.0 0.0017 17.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Thioredoxin_2 PF13098.1 gi|147919783|ref|YP_686471.1| - 0.0037 17.4 0.0 0.0058 16.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain SNF2_assoc PF08455.5 gi|147919783|ref|YP_686471.1| - 0.018 13.5 0.0 0.024 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial SNF2 helicase associated SCO1-SenC PF02630.9 gi|147919783|ref|YP_686471.1| - 0.049 13.2 0.0 0.096 12.2 0.0 1.5 1 1 0 1 1 1 0 SCO1/SenC Glyco_tranf_2_3 PF13641.1 gi|147919784|ref|YP_686470.1| - 1.8e-34 119.5 0.0 2.3e-34 119.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|147919784|ref|YP_686470.1| - 8.3e-26 90.8 0.1 8.3e-26 90.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|147919784|ref|YP_686470.1| - 6.1e-22 78.0 0.0 9.7e-22 77.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|147919784|ref|YP_686470.1| - 1.4e-13 50.5 0.0 2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|147919784|ref|YP_686470.1| - 1.1e-08 34.5 0.0 2.7e-08 33.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Wzy_C PF04932.10 gi|147919784|ref|YP_686470.1| - 2.7 7.7 8.1 29 4.4 0.0 2.3 2 0 0 2 2 2 0 O-Antigen ligase DisA_N PF02457.11 gi|147919785|ref|YP_686469.1| - 1.5e-14 53.1 0.0 2.6e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding GtrA PF04138.9 gi|147919786|ref|YP_686468.1| - 1.1e-19 70.5 20.4 3.3e-19 68.9 14.3 1.6 1 1 0 1 1 1 1 GtrA-like protein Baculo_LEF5 PF04838.7 gi|147919786|ref|YP_686468.1| - 0.19 11.4 1.8 0.32 10.7 1.3 1.3 1 0 0 1 1 1 0 Baculoviridae late expression factor 5 DUF1751 PF08551.5 gi|147919786|ref|YP_686468.1| - 4.2 7.7 13.2 1.4 9.3 3.4 2.1 2 0 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) DUF1129 PF06570.6 gi|147919786|ref|YP_686468.1| - 4.6 6.4 9.6 6.7 5.9 6.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) GATase PF00117.23 gi|147919787|ref|YP_686467.1| - 3e-31 108.3 0.0 3.4e-31 108.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|147919787|ref|YP_686467.1| - 4.3e-06 26.4 0.1 7.8e-06 25.5 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|147919787|ref|YP_686467.1| - 2.7e-05 23.7 0.1 0.00022 20.7 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|147919787|ref|YP_686467.1| - 0.00039 20.1 0.0 0.0011 18.6 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DUF2665 PF11654.3 gi|147919787|ref|YP_686467.1| - 0.024 14.1 0.1 6.8 6.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2665) PAPS_reduct PF01507.14 gi|147919788|ref|YP_686466.1| - 7.1e-44 149.6 0.0 1.2e-43 148.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.15 gi|147919788|ref|YP_686466.1| - 3.5e-13 49.0 0.3 3.5e-13 49.0 0.2 1.8 2 0 0 2 2 2 1 PUA domain Fer4_10 PF13237.1 gi|147919788|ref|YP_686466.1| - 1.2e-05 24.9 11.8 1.2e-05 24.9 8.2 2.5 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919788|ref|YP_686466.1| - 1.2e-05 25.5 12.3 1.2e-05 25.5 8.5 2.7 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919788|ref|YP_686466.1| - 3.1e-05 23.3 6.5 3.1e-05 23.3 4.5 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919788|ref|YP_686466.1| - 8.5e-05 22.7 11.2 8.5e-05 22.7 7.8 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919788|ref|YP_686466.1| - 0.0017 18.3 11.6 0.0017 18.3 8.0 2.9 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919788|ref|YP_686466.1| - 0.0037 17.4 11.4 0.015 15.5 1.2 4.0 4 1 0 4 4 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919788|ref|YP_686466.1| - 0.0043 17.7 10.2 0.014 16.1 1.3 3.9 3 1 2 5 5 5 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147919788|ref|YP_686466.1| - 0.011 15.5 14.3 0.011 15.5 9.9 3.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919788|ref|YP_686466.1| - 0.047 14.0 1.0 0.047 14.0 0.7 3.4 4 1 1 5 5 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919788|ref|YP_686466.1| - 0.14 12.5 14.4 1 9.8 2.7 3.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919788|ref|YP_686466.1| - 0.55 10.8 13.0 0.51 10.9 1.5 2.9 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147919788|ref|YP_686466.1| - 1.4 9.3 12.1 4.9 7.6 1.1 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|147919788|ref|YP_686466.1| - 3.8 7.6 29.2 0.084 12.8 3.6 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain GrpE PF01025.14 gi|147919789|ref|YP_686465.1| - 1.7e-12 47.2 0.0 2.1e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 GrpE Octopine_DH PF02317.12 gi|147919789|ref|YP_686465.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 1 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain AAA_16 PF13191.1 gi|147919790|ref|YP_686464.1| - 1.3e-37 129.6 1.1 6.5e-37 127.3 0.0 2.9 4 0 0 4 4 2 1 AAA ATPase domain Pkinase PF00069.20 gi|147919790|ref|YP_686464.1| - 5.9e-30 104.2 0.0 1e-29 103.5 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|147919790|ref|YP_686464.1| - 4.4e-20 71.8 0.0 7.6e-20 71.0 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase HATPase_c PF02518.21 gi|147919790|ref|YP_686464.1| - 3.6e-19 68.5 0.0 1.3e-18 66.6 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|147919790|ref|YP_686464.1| - 4.8e-15 55.4 0.0 1.1e-14 54.2 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF PF01590.21 gi|147919790|ref|YP_686464.1| - 2.2e-14 53.8 0.0 4.2e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|147919790|ref|YP_686464.1| - 7.3e-14 51.9 0.0 2.3e-13 50.3 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|147919790|ref|YP_686464.1| - 5.8e-13 49.1 0.0 3.9e-12 46.4 0.0 2.4 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.1 gi|147919790|ref|YP_686464.1| - 4.9e-12 46.5 0.1 1.6e-11 44.8 0.0 2.0 2 0 0 2 2 1 1 GAF domain PAS PF00989.19 gi|147919790|ref|YP_686464.1| - 9.4e-11 41.5 0.0 2.4e-10 40.1 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|147919790|ref|YP_686464.1| - 5.5e-09 35.5 0.0 1.9e-08 33.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|147919790|ref|YP_686464.1| - 6.8e-09 35.7 0.1 3.3e-08 33.5 0.0 2.3 2 0 0 2 2 1 1 PAS fold Zeta_toxin PF06414.7 gi|147919790|ref|YP_686464.1| - 3.8e-05 22.8 0.0 0.0002 20.5 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_19 PF13245.1 gi|147919790|ref|YP_686464.1| - 0.00044 19.9 0.0 0.0013 18.4 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|147919790|ref|YP_686464.1| - 0.0034 17.5 0.0 0.025 14.7 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|147919790|ref|YP_686464.1| - 0.0049 17.0 0.0 0.021 15.0 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|147919790|ref|YP_686464.1| - 0.0086 14.8 0.1 0.025 13.3 0.0 1.8 2 0 0 2 2 2 1 ArgK protein Mg_chelatase PF01078.16 gi|147919790|ref|YP_686464.1| - 0.01 14.9 0.0 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DAP3 PF10236.4 gi|147919790|ref|YP_686464.1| - 0.016 14.1 0.0 0.033 13.1 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 HATPase_c_5 PF14501.1 gi|147919790|ref|YP_686464.1| - 0.018 14.7 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 GHKL domain AAA_5 PF07728.9 gi|147919790|ref|YP_686464.1| - 0.028 14.1 0.0 0.19 11.4 0.0 2.5 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|147919790|ref|YP_686464.1| - 0.038 13.6 0.0 0.095 12.3 0.0 1.7 1 0 0 1 1 1 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|147919790|ref|YP_686464.1| - 0.041 13.9 0.0 0.64 10.0 0.0 2.7 2 1 0 2 2 2 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|147919790|ref|YP_686464.1| - 0.043 13.2 0.0 0.13 11.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|147919790|ref|YP_686464.1| - 0.045 13.3 0.0 0.096 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|147919790|ref|YP_686464.1| - 0.067 12.8 0.1 0.15 11.7 0.1 1.6 1 0 0 1 1 1 0 NTPase NACHT PF05729.7 gi|147919790|ref|YP_686464.1| - 0.092 12.4 0.2 0.66 9.6 0.0 2.5 3 0 0 3 3 2 0 NACHT domain DUF4445 PF14574.1 gi|147919791|ref|YP_686463.1| - 6.1e-107 357.3 0.0 1.1e-106 356.6 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4445) Fer4_6 PF12837.2 gi|147919791|ref|YP_686463.1| - 1.2e-06 28.0 13.4 1.8e-05 24.3 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919791|ref|YP_686463.1| - 2.8e-05 24.3 10.9 5.7e-05 23.4 7.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919791|ref|YP_686463.1| - 0.00026 20.7 11.6 0.0006 19.5 8.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919791|ref|YP_686463.1| - 0.0014 18.1 10.9 0.049 13.2 1.0 3.1 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919791|ref|YP_686463.1| - 0.0025 17.6 13.9 0.004 16.9 2.8 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919791|ref|YP_686463.1| - 0.0025 18.0 10.9 0.1 12.8 8.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919791|ref|YP_686463.1| - 0.0059 16.8 12.6 0.2 12.0 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919791|ref|YP_686463.1| - 0.0084 15.9 6.7 0.019 14.8 4.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Ub-Mut7C PF14451.1 gi|147919791|ref|YP_686463.1| - 0.037 13.5 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 Mut7-C ubiquitin Fer4_11 PF13247.1 gi|147919791|ref|YP_686463.1| - 0.081 12.8 3.2 0.15 11.9 2.2 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919791|ref|YP_686463.1| - 0.19 12.0 6.1 1.7 9.0 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147919791|ref|YP_686463.1| - 0.46 10.9 6.5 5.7 7.4 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919791|ref|YP_686463.1| - 0.49 11.1 10.0 0.91 10.3 1.9 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|147919791|ref|YP_686463.1| - 0.59 10.1 11.7 0.91 9.6 1.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919791|ref|YP_686463.1| - 8.3 7.0 8.6 1.9 9.1 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain MtaB PF12176.3 gi|147919792|ref|YP_686462.1| - 2.5e-220 731.7 0.0 2.8e-220 731.5 0.0 1.0 1 0 0 1 1 1 1 Methanol-cobalamin methyltransferase B subunit B12-binding_2 PF02607.12 gi|147919793|ref|YP_686461.1| - 2.4e-19 69.1 0.2 4.3e-19 68.3 0.2 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding PF02310.14 gi|147919793|ref|YP_686461.1| - 6.5e-17 61.5 0.1 1.1e-16 60.7 0.1 1.4 1 0 0 1 1 1 1 B12 binding domain Inhibitor_I42 PF09394.5 gi|147919794|ref|YP_686460.1| - 6.3e-16 58.4 0.0 8.5e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 Cpn60_TCP1 PF00118.19 gi|147919795|ref|YP_686459.1| - 2.5e-170 567.2 16.3 2.9e-170 567.0 11.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DNA_ligase_A_M PF01068.16 gi|147919797|ref|YP_686457.1| - 4e-31 107.9 0.0 6e-31 107.3 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_C PF04679.10 gi|147919797|ref|YP_686457.1| - 1.9e-28 98.6 0.1 4.7e-28 97.4 0.0 1.7 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|147919797|ref|YP_686457.1| - 0.024 14.3 0.1 11 5.6 0.0 2.8 2 1 0 3 3 3 0 mRNA capping enzyme, catalytic domain DNA_primase_S PF01896.14 gi|147919798|ref|YP_686456.1| - 6.2e-07 29.3 0.0 1.2e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit AIM24 PF01987.12 gi|147919799|ref|YP_686455.1| - 1.8e-64 217.1 0.6 2.1e-64 216.9 0.4 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 DAP_epimerase PF01678.14 gi|147919801|ref|YP_686453.1| - 8.4e-64 212.9 2.7 1.7e-38 131.2 0.1 2.0 2 0 0 2 2 2 2 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|147919801|ref|YP_686453.1| - 0.00023 20.1 0.3 0.00042 19.2 0.0 1.5 2 0 0 2 2 2 1 Proline racemase Orn_Arg_deC_N PF02784.11 gi|147919802|ref|YP_686452.1| - 1.5e-57 194.6 0.0 2e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|147919802|ref|YP_686452.1| - 1.2e-19 70.1 0.0 2.4e-19 69.1 0.0 1.5 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|147919802|ref|YP_686452.1| - 2.3e-12 46.9 0.0 5e-12 45.8 0.0 1.5 1 1 0 1 1 1 1 Alanine racemase, N-terminal domain S6PP PF05116.8 gi|147919802|ref|YP_686452.1| - 0.0018 17.6 0.0 0.0035 16.6 0.0 1.4 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Aminotran_1_2 PF00155.16 gi|147919803|ref|YP_686451.1| - 1.5e-59 201.8 0.0 1.7e-59 201.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|147919803|ref|YP_686451.1| - 0.0061 14.8 0.0 0.0087 14.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SBP_bac_5 PF00496.17 gi|147919803|ref|YP_686451.1| - 0.035 12.9 0.0 0.31 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 5 Middle Alliinase_C PF04864.8 gi|147919803|ref|YP_686451.1| - 0.044 12.4 0.0 0.32 9.5 0.0 1.9 1 1 0 2 2 2 0 Allinase UDPG_MGDP_dh_N PF03721.9 gi|147919804|ref|YP_686448.1| - 6.7e-36 123.3 0.0 1.2e-35 122.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|147919804|ref|YP_686448.1| - 3e-22 78.7 0.0 7.5e-22 77.4 0.0 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|147919804|ref|YP_686448.1| - 1.3e-18 66.9 0.0 2.9e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain Semialdhyde_dh PF01118.19 gi|147919804|ref|YP_686448.1| - 0.048 13.9 0.0 0.69 10.2 0.0 2.6 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain NosD PF05048.8 gi|147919805|ref|YP_686447.1| - 3.3e-58 196.6 56.3 3.5e-44 150.7 15.0 2.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|147919805|ref|YP_686447.1| - 7.9e-30 103.6 50.8 1.7e-12 47.4 21.3 3.4 1 1 2 3 3 3 3 Right handed beta helix region DUF1565 PF07602.6 gi|147919805|ref|YP_686447.1| - 1.6e-05 24.1 18.8 0.001 18.2 7.6 4.2 1 1 2 3 3 3 2 Protein of unknown function (DUF1565) NosD PF05048.8 gi|147919806|ref|YP_686446.1| - 4.8e-56 189.5 63.3 3.8e-44 150.6 22.3 2.7 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|147919806|ref|YP_686446.1| - 3.6e-32 111.3 62.6 1.3e-15 57.4 6.5 3.5 1 1 2 3 3 3 3 Right handed beta helix region Trypan_PARP PF05887.6 gi|147919806|ref|YP_686446.1| - 2.3 8.0 12.3 2.5 7.9 7.7 1.6 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) Asn_synthase PF00733.16 gi|147919807|ref|YP_686445.1| - 8.2e-53 179.5 0.0 1.2e-52 179.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|147919807|ref|YP_686445.1| - 4.9e-46 155.5 0.0 7.6e-46 154.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|147919807|ref|YP_686445.1| - 1.3e-42 144.9 0.0 2.6e-42 143.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|147919807|ref|YP_686445.1| - 0.00016 20.5 0.0 0.009 14.7 0.0 2.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|147919807|ref|YP_686445.1| - 0.00096 18.4 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein Polysacc_synt PF01943.12 gi|147919808|ref|YP_686444.1| - 2.4e-11 43.4 45.4 2.4e-11 43.4 31.4 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|147919808|ref|YP_686444.1| - 4.1e-06 26.4 55.4 0.0017 17.8 22.0 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|147919808|ref|YP_686444.1| - 0.00012 21.9 30.6 0.002 17.9 5.2 4.2 2 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain PIG-P PF08510.7 gi|147919809|ref|YP_686443.1| - 6.6 6.3 14.9 0.029 13.9 2.5 3.1 3 0 0 3 3 3 0 PIG-P Acetyltransf_6 PF13480.1 gi|147919810|ref|YP_686442.1| - 7.1e-11 42.2 0.0 1.4e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919810|ref|YP_686442.1| - 3.2e-05 22.8 0.0 0.0014 17.4 0.0 2.2 1 1 1 2 2 2 2 FemAB family DUF482 PF04339.7 gi|147919810|ref|YP_686442.1| - 0.0013 17.6 0.0 0.16 10.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF482 Acetyltransf_6 PF13480.1 gi|147919811|ref|YP_686441.1| - 5.5e-11 42.6 0.3 1.5e-10 41.1 0.2 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919811|ref|YP_686441.1| - 0.00044 19.0 0.0 0.0043 15.7 0.0 2.0 2 0 0 2 2 2 1 FemAB family Polysacc_deac_1 PF01522.16 gi|147919812|ref|YP_686440.1| - 0.029 13.9 0.0 0.099 12.2 0.0 1.8 1 1 0 1 1 1 0 Polysaccharide deacetylase DUF354 PF04007.7 gi|147919813|ref|YP_686439.1| - 6.5e-10 38.3 0.0 3e-09 36.2 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|147919813|ref|YP_686439.1| - 1.3e-06 28.6 0.0 6.2e-06 26.4 0.0 1.9 1 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|147919813|ref|YP_686439.1| - 0.0017 18.1 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.15 gi|147919813|ref|YP_686439.1| - 0.0047 16.7 0.0 0.017 14.9 0.0 1.9 3 0 0 3 3 3 1 Glycosyltransferase family 28 N-terminal domain Epimerase_2 PF02350.14 gi|147919813|ref|YP_686439.1| - 0.077 11.7 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_2 PF00535.21 gi|147919814|ref|YP_686438.1| - 1e-24 87.1 0.0 1.4e-24 86.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147919814|ref|YP_686438.1| - 4e-11 43.1 0.0 5.7e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|147919814|ref|YP_686438.1| - 0.013 15.7 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|147919814|ref|YP_686438.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 DUF1616 PF07760.6 gi|147919815|ref|YP_686437.1| - 1.2e-88 296.9 6.1 1.4e-88 296.7 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.11 gi|147919815|ref|YP_686437.1| - 6.5e-05 21.8 7.1 9.7e-05 21.2 4.9 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF4131 PF13567.1 gi|147919815|ref|YP_686437.1| - 0.05 13.0 9.7 0.64 9.3 2.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) MASE1 PF05231.9 gi|147919815|ref|YP_686437.1| - 0.33 9.9 14.7 1.3 7.9 9.7 1.8 1 1 0 1 1 1 0 MASE1 Polysacc_synt_3 PF13440.1 gi|147919815|ref|YP_686437.1| - 3.3 7.0 16.4 1 8.7 9.3 1.5 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein PrgI PF12666.2 gi|147919815|ref|YP_686437.1| - 3.5 7.8 11.9 3.5 7.8 0.2 2.8 3 0 0 3 3 3 0 PrgI family protein DUF3290 PF11694.3 gi|147919815|ref|YP_686437.1| - 3.7 7.2 5.8 5.7 6.6 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3290) Acetyltransf_6 PF13480.1 gi|147919816|ref|YP_686435.1| - 3.4e-11 43.2 0.0 4.5e-09 36.4 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919816|ref|YP_686435.1| - 5.4e-07 28.6 0.2 0.014 14.1 0.1 2.2 1 1 1 2 2 2 2 FemAB family Beta_helix PF13229.1 gi|147919818|ref|YP_686433.1| - 6.7e-51 172.1 108.0 3.4e-23 82.1 24.7 3.5 1 1 3 4 4 4 4 Right handed beta helix region NosD PF05048.8 gi|147919818|ref|YP_686433.1| - 4.2e-40 137.3 50.1 5.2e-22 78.1 15.2 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) NosD PF05048.8 gi|147919819|ref|YP_686432.1| - 1.1e-49 168.7 55.9 1.8e-36 125.5 24.3 2.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|147919819|ref|YP_686432.1| - 3.2e-31 108.2 51.1 2.7e-17 62.9 11.3 4.1 1 1 3 4 4 4 2 Right handed beta helix region Glyco_hydro_16 PF00722.16 gi|147919819|ref|YP_686432.1| - 1.3e-17 63.7 1.2 5e-17 61.7 0.8 2.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 DUF3060 PF11259.3 gi|147919819|ref|YP_686432.1| - 0.0009 18.8 15.8 0.0039 16.7 0.1 3.6 3 0 0 3 3 3 2 Protein of unknown function (DUF3060) Trypan_PARP PF05887.6 gi|147919819|ref|YP_686432.1| - 0.54 10.0 19.8 0.9 9.3 8.3 2.5 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) AMP-binding PF00501.23 gi|147919820|ref|YP_686431.1| - 0.0037 15.7 0.4 0.011 14.1 0.3 1.9 1 1 0 1 1 1 1 AMP-binding enzyme DUF3106 PF11304.3 gi|147919820|ref|YP_686431.1| - 0.12 12.7 1.5 18 5.8 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3106) Polysacc_synt PF01943.12 gi|147919821|ref|YP_686430.1| - 3.5e-08 33.0 38.2 3.5e-08 33.0 26.5 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|147919821|ref|YP_686430.1| - 2.1e-06 27.3 25.0 2.1e-06 27.3 17.3 2.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|147919821|ref|YP_686430.1| - 0.00035 20.4 57.3 0.0027 17.5 10.1 4.0 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain PMT_2 PF13231.1 gi|147919822|ref|YP_686429.1| - 0.0031 17.4 22.9 0.0031 17.4 15.9 4.9 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EpsG PF14897.1 gi|147919822|ref|YP_686429.1| - 0.42 9.4 59.0 0.035 13.0 31.1 2.2 1 1 1 2 2 2 0 EpsG family B12D PF06522.6 gi|147919822|ref|YP_686429.1| - 9.9 5.9 5.8 5.7 6.7 0.2 2.9 3 0 0 3 3 3 0 NADH-ubiquinone reductase complex 1 MLRQ subunit PMT_2 PF13231.1 gi|147919823|ref|YP_686428.1| - 0.0003 20.7 19.8 0.0003 20.7 13.7 4.5 3 2 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase InaF-motif PF15018.1 gi|147919823|ref|YP_686428.1| - 0.0015 17.8 1.5 0.011 15.1 1.0 2.6 1 0 0 1 1 1 1 TRP-interacting helix Phage_holin_2 PF04550.7 gi|147919823|ref|YP_686428.1| - 3.5 7.7 9.8 3.7 7.7 0.4 3.5 3 0 0 3 3 3 0 Phage holin family 2 DUF362 PF04015.7 gi|147919824|ref|YP_686427.1| - 1.5e-30 106.1 0.0 1.1e-22 80.5 0.0 2.9 3 1 0 3 3 3 2 Domain of unknown function (DUF362) Acetyltransf_6 PF13480.1 gi|147919825|ref|YP_686426.1| - 5.7e-12 45.7 0.0 8.4e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147919825|ref|YP_686426.1| - 1.3e-10 40.5 0.8 5.3e-06 25.3 0.1 3.0 2 1 1 3 3 3 2 FemAB family Polysacc_deac_1 PF01522.16 gi|147919826|ref|YP_686425.1| - 0.00063 19.3 0.0 0.0058 16.2 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide deacetylase Imm19 PF15567.1 gi|147919827|ref|YP_686424.1| - 0.069 13.1 0.1 4.8 7.2 0.0 2.5 2 0 0 2 2 2 0 Immunity protein 19 Epimerase_2 PF02350.14 gi|147919828|ref|YP_686423.1| - 9e-109 363.3 0.0 1e-108 363.1 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|147919828|ref|YP_686423.1| - 0.0014 17.5 0.0 0.0019 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|147919828|ref|YP_686423.1| - 0.022 14.8 0.0 0.038 14.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain YjcQ PF09639.5 gi|147919828|ref|YP_686423.1| - 0.043 13.8 0.0 0.32 11.1 0.0 2.2 2 0 0 2 2 2 0 YjcQ protein PaRep2b PF07775.6 gi|147919828|ref|YP_686423.1| - 0.1 10.8 0.1 0.18 9.9 0.1 1.3 1 0 0 1 1 1 0 PaRep2b protein DUF354 PF04007.7 gi|147919829|ref|YP_686422.1| - 4.4e-33 114.5 0.0 7.7e-33 113.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.1 gi|147919829|ref|YP_686422.1| - 0.0029 17.3 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.15 gi|147919829|ref|YP_686422.1| - 0.0087 15.8 0.0 0.019 14.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_2 PF13477.1 gi|147919829|ref|YP_686422.1| - 0.0089 15.8 0.3 0.017 14.9 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like Epimerase_2 PF02350.14 gi|147919829|ref|YP_686422.1| - 0.15 10.7 0.0 0.27 9.9 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase His_biosynth PF00977.16 gi|147919830|ref|YP_686421.1| - 1.4e-68 230.5 0.0 1.8e-68 230.2 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|147919830|ref|YP_686421.1| - 4.8e-09 35.8 2.3 8.8e-08 31.6 0.4 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|147919830|ref|YP_686421.1| - 6.3e-06 25.3 0.1 1.9e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|147919830|ref|YP_686421.1| - 7.7e-05 21.6 0.1 0.18 10.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|147919830|ref|YP_686421.1| - 0.00015 20.9 0.2 0.037 13.1 0.1 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|147919830|ref|YP_686421.1| - 0.00038 19.6 1.9 0.025 13.6 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.7 gi|147919830|ref|YP_686421.1| - 0.00093 18.2 0.1 0.12 11.4 0.0 2.1 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.20 gi|147919830|ref|YP_686421.1| - 0.002 17.0 1.2 0.0034 16.3 0.2 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.12 gi|147919830|ref|YP_686421.1| - 0.0029 16.8 0.5 0.034 13.3 0.0 2.1 2 0 0 2 2 2 1 PcrB family Trp_syntA PF00290.15 gi|147919830|ref|YP_686421.1| - 0.014 13.9 0.6 0.26 9.7 0.0 2.1 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DUF561 PF04481.7 gi|147919830|ref|YP_686421.1| - 0.014 14.3 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) GATase PF00117.23 gi|147919831|ref|YP_686420.1| - 8.3e-31 106.9 0.0 9.4e-31 106.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|147919831|ref|YP_686420.1| - 1.5e-09 37.7 0.0 5.1e-09 36.0 0.0 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|147919831|ref|YP_686420.1| - 3.4e-07 29.9 0.0 4.7e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.8 gi|147919831|ref|YP_686420.1| - 4.9e-07 29.4 0.1 0.0011 18.5 0.1 2.3 2 1 0 2 2 2 2 Peptidase C26 QueC PF06508.8 gi|147919832|ref|YP_686419.1| - 1.7e-05 24.2 0.1 5.3e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|147919832|ref|YP_686419.1| - 0.00088 18.8 0.0 0.0026 17.2 0.0 1.8 1 1 1 2 2 2 1 PP-loop family Glycos_transf_2 PF00535.21 gi|147919833|ref|YP_686418.1| - 3.5e-25 88.6 0.0 5.7e-24 84.6 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147919833|ref|YP_686418.1| - 1.7e-07 31.2 0.0 4e-07 30.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|147919833|ref|YP_686418.1| - 0.0001 22.4 0.3 0.18 11.8 0.1 2.5 2 0 0 2 2 2 2 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|147919833|ref|YP_686418.1| - 0.0044 17.3 0.0 0.0086 16.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF4400 PF14348.1 gi|147919833|ref|YP_686418.1| - 9.7 5.5 8.2 16 4.8 5.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) GFO_IDH_MocA PF01408.17 gi|147919834|ref|YP_686417.1| - 2.5e-29 102.2 0.1 5e-29 101.2 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|147919834|ref|YP_686417.1| - 6.8e-08 32.3 0.1 4.5e-07 29.6 0.0 2.3 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|147919834|ref|YP_686417.1| - 9.3e-05 21.5 1.5 0.0002 20.4 1.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|147919834|ref|YP_686417.1| - 9.5e-05 22.3 1.7 0.00013 21.8 0.2 2.0 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus OCD_Mu_crystall PF02423.10 gi|147919834|ref|YP_686417.1| - 0.00012 20.9 0.2 0.00041 19.2 0.1 1.9 2 0 0 2 2 2 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|147919834|ref|YP_686417.1| - 0.00062 20.1 0.2 0.0013 19.1 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|147919834|ref|YP_686417.1| - 0.00076 18.6 0.1 0.0015 17.6 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|147919834|ref|YP_686417.1| - 0.0012 18.2 0.2 0.0022 17.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|147919834|ref|YP_686417.1| - 0.0013 18.6 0.6 0.0026 17.6 0.3 1.7 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|147919834|ref|YP_686417.1| - 0.0014 18.9 0.2 0.0052 17.0 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|147919834|ref|YP_686417.1| - 0.0056 17.1 0.3 0.013 15.9 0.2 1.7 1 0 0 1 1 1 1 CoA binding domain Shikimate_DH PF01488.15 gi|147919834|ref|YP_686417.1| - 0.0062 16.6 0.2 0.018 15.1 0.1 1.9 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|147919834|ref|YP_686417.1| - 0.0066 16.2 2.1 0.67 9.7 0.9 2.6 2 1 0 2 2 2 1 ThiF family Gp_dh_N PF00044.19 gi|147919834|ref|YP_686417.1| - 0.017 15.1 0.1 0.031 14.2 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DegT_DnrJ_EryC1 PF01041.12 gi|147919835|ref|YP_686416.1| - 4e-133 443.9 0.0 4.5e-133 443.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|147919835|ref|YP_686416.1| - 5e-09 35.5 0.0 1.7e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147919835|ref|YP_686416.1| - 8.9e-09 34.8 0.1 1.7e-08 33.9 0.1 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|147919835|ref|YP_686416.1| - 2.9e-06 25.8 0.0 3.9e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|147919835|ref|YP_686416.1| - 0.004 15.9 0.1 0.0089 14.8 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V NYN PF01936.13 gi|147919835|ref|YP_686416.1| - 0.084 13.1 0.0 0.19 11.9 0.0 1.5 1 1 0 1 1 1 0 NYN domain Peripla_BP_6 PF13458.1 gi|147919835|ref|YP_686416.1| - 0.1 11.9 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Hexapep PF00132.19 gi|147919836|ref|YP_686415.1| - 5.7e-32 107.8 11.8 1.4e-08 33.8 0.1 5.3 3 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|147919836|ref|YP_686415.1| - 5.9e-19 67.3 17.3 1.4e-05 24.5 0.2 5.6 5 0 0 5 5 5 5 Hexapeptide repeat of succinyl-transferase Acetyltransf_1 PF00583.19 gi|147919837|ref|YP_686413.1| - 5.2e-16 58.4 0.0 7.1e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147919837|ref|YP_686413.1| - 3.7e-11 43.0 0.0 5.1e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147919837|ref|YP_686413.1| - 2.3e-10 40.4 0.0 2.9e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147919837|ref|YP_686413.1| - 9.7e-07 28.9 0.0 1.1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147919837|ref|YP_686413.1| - 3.2e-05 23.6 0.0 4.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|147919837|ref|YP_686413.1| - 0.00053 19.9 0.0 0.00095 19.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147919837|ref|YP_686413.1| - 0.0009 19.4 0.0 0.0011 19.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147919837|ref|YP_686413.1| - 0.0026 17.7 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147919837|ref|YP_686413.1| - 0.03 14.2 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1462 PF07315.6 gi|147919837|ref|YP_686413.1| - 0.031 14.2 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1462) Fer4 PF00037.22 gi|147919838|ref|YP_686412.1| - 6.4e-08 31.8 11.2 4.2e-05 22.9 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147919838|ref|YP_686412.1| - 7.1e-07 28.8 11.7 0.00083 19.1 0.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919838|ref|YP_686412.1| - 2.6e-06 27.7 9.9 2.6e-06 27.7 6.8 2.6 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919838|ref|YP_686412.1| - 1.7e-05 24.5 10.8 1.7e-05 24.5 7.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919838|ref|YP_686412.1| - 0.00016 21.3 0.9 0.00016 21.3 0.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919838|ref|YP_686412.1| - 0.00018 21.7 10.7 0.00018 21.7 7.4 2.6 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147919838|ref|YP_686412.1| - 0.0028 17.4 10.2 0.0028 17.4 7.1 2.7 2 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919838|ref|YP_686412.1| - 0.035 14.4 1.5 0.035 14.4 1.0 3.5 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919838|ref|YP_686412.1| - 0.041 14.2 3.2 0.041 14.2 2.2 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919838|ref|YP_686412.1| - 5.2 7.1 28.1 0.81 9.7 1.3 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain TetR_N PF00440.18 gi|147919840|ref|YP_686409.1| - 9e-15 54.0 0.0 2.2e-14 52.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|147919840|ref|YP_686409.1| - 0.023 14.2 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147919840|ref|YP_686409.1| - 0.029 13.8 0.1 0.056 12.9 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|147919840|ref|YP_686409.1| - 0.033 13.8 0.1 0.099 12.3 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|147919840|ref|YP_686409.1| - 0.039 13.9 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|147919840|ref|YP_686409.1| - 0.062 13.5 0.0 0.3 11.3 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|147919840|ref|YP_686409.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|147919840|ref|YP_686409.1| - 0.074 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TrmB PF01978.14 gi|147919840|ref|YP_686409.1| - 0.1 12.3 0.0 0.35 10.5 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF116 PF01976.12 gi|147919841|ref|YP_686408.1| - 1.1e-37 129.0 0.1 1.6e-37 128.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF116 FMN_red PF03358.10 gi|147919842|ref|YP_686407.1| - 3.5e-07 29.8 0.0 3.6e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147919842|ref|YP_686407.1| - 0.039 13.4 0.0 0.042 13.3 0.0 1.1 1 0 0 1 1 1 0 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|147919843|ref|YP_686406.1| - 2.1e-26 92.6 0.1 2.5e-26 92.3 0.1 1.0 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|147919843|ref|YP_686406.1| - 1.9e-09 37.6 0.6 3.9e-09 36.6 0.2 1.7 2 0 0 2 2 2 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|147919843|ref|YP_686406.1| - 3e-08 33.2 0.0 4.4e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|147919843|ref|YP_686406.1| - 4.5e-05 23.0 0.6 0.0021 17.5 0.4 2.3 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|147919843|ref|YP_686406.1| - 0.00028 20.2 0.2 0.13 11.6 0.0 2.8 2 1 1 3 3 3 2 Flavodoxin PTS_IIB PF02302.12 gi|147919843|ref|YP_686406.1| - 0.0007 20.0 0.7 0.051 14.0 0.0 2.4 2 0 0 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit UPF0047 PF01894.12 gi|147919844|ref|YP_686405.1| - 2.6e-45 153.0 0.0 3e-45 152.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Orbi_VP7 PF00897.12 gi|147919844|ref|YP_686405.1| - 0.057 12.3 0.1 0.069 12.0 0.1 1.1 1 0 0 1 1 1 0 Orbivirus inner capsid protein VP7 Flavodoxin_5 PF12724.2 gi|147919845|ref|YP_686404.1| - 3.8e-06 26.9 0.1 4.6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|147919845|ref|YP_686404.1| - 4.4e-05 22.9 0.0 5.7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|147919845|ref|YP_686404.1| - 0.0038 16.6 0.0 0.054 12.8 0.0 2.0 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_1 PF00258.20 gi|147919845|ref|YP_686404.1| - 0.038 13.9 0.1 0.059 13.3 0.1 1.3 1 0 0 1 1 1 0 Flavodoxin LytR_C PF13399.1 gi|147919845|ref|YP_686404.1| - 0.041 14.2 0.4 0.13 12.6 0.1 1.9 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator SEF14_adhesin PF06443.6 gi|147919845|ref|YP_686404.1| - 0.21 11.2 7.3 0.29 10.7 5.1 1.3 1 1 0 1 1 1 0 SEF14-like adhesin FMN_red PF03358.10 gi|147919846|ref|YP_686403.1| - 9.2e-28 96.6 0.0 1.2e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147919846|ref|YP_686403.1| - 6.8e-16 58.3 0.0 1.1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_2 PF12797.2 gi|147919846|ref|YP_686403.1| - 0.053 13.4 0.9 0.094 12.6 0.6 1.4 1 0 0 1 1 1 0 4Fe-4S binding domain Glyco_hydro_19 PF00182.14 gi|147919846|ref|YP_686403.1| - 0.063 12.9 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 Chitinase class I Fer4_8 PF13183.1 gi|147919846|ref|YP_686403.1| - 0.075 13.0 0.2 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain CDP-OH_P_transf PF01066.16 gi|147919847|ref|YP_686402.1| - 1.6e-16 60.4 4.5 2.9e-16 59.6 3.1 1.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF4131 PF13567.1 gi|147919847|ref|YP_686402.1| - 5.6 6.3 7.3 0.3 10.4 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) TetR_N PF00440.18 gi|147919848|ref|YP_686401.1| - 3.4e-18 64.9 0.4 6.6e-18 64.0 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.1 gi|147919848|ref|YP_686401.1| - 0.021 14.3 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|147919848|ref|YP_686401.1| - 0.12 11.7 0.0 0.3 10.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HIT PF01230.18 gi|147919849|ref|YP_686400.1| - 4.6e-05 23.8 0.2 7.5e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|147919849|ref|YP_686400.1| - 0.0095 16.1 0.1 0.015 15.5 0.1 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Toxin_3 PF00537.13 gi|147919850|ref|YP_686399.1| - 0.13 12.2 1.1 0.2 11.5 0.8 1.4 1 0 0 1 1 1 0 Scorpion toxin-like domain ABC_tran PF00005.22 gi|147919851|ref|YP_686398.1| - 1.6e-34 119.1 0.0 3.1e-34 118.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919851|ref|YP_686398.1| - 6.4e-13 49.3 0.1 1.1e-07 32.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919851|ref|YP_686398.1| - 0.00087 18.5 0.1 0.88 8.7 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|147919851|ref|YP_686398.1| - 0.0015 18.8 0.2 0.0049 17.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147919851|ref|YP_686398.1| - 0.0033 16.9 0.1 0.0075 15.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|147919851|ref|YP_686398.1| - 0.019 15.1 1.7 0.33 11.1 0.6 2.8 1 1 1 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|147919851|ref|YP_686398.1| - 0.037 13.0 0.0 0.77 8.7 0.0 2.1 1 1 1 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|147919851|ref|YP_686398.1| - 0.078 12.4 0.0 0.45 9.8 0.1 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|147919851|ref|YP_686398.1| - 0.092 11.1 0.1 2.9 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|147919851|ref|YP_686398.1| - 0.1 13.0 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein GTP_EFTU PF00009.22 gi|147919851|ref|YP_686398.1| - 0.15 11.4 0.1 0.34 10.3 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain ABC2_membrane_3 PF12698.2 gi|147919852|ref|YP_686397.1| - 6.8e-08 31.9 24.5 6.8e-08 31.9 17.0 2.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147919853|ref|YP_686396.1| - 3.9e-19 68.9 20.4 5.4e-19 68.4 14.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147919853|ref|YP_686396.1| - 2.5e-13 49.5 4.1 5.9e-13 48.3 2.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147919853|ref|YP_686396.1| - 4.3e-06 26.0 19.5 4.5e-05 22.7 13.5 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147919853|ref|YP_686396.1| - 2.1e-05 23.9 17.5 2.1e-05 23.9 12.1 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF3087 PF11286.3 gi|147919853|ref|YP_686396.1| - 0.14 11.4 5.0 2.2 7.5 0.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) Lactamase_B_2 PF12706.2 gi|147919854|ref|YP_686395.1| - 6.6e-20 71.4 0.0 9.9e-20 70.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|147919854|ref|YP_686395.1| - 3.7e-10 39.7 0.0 5.5e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147919854|ref|YP_686395.1| - 7e-10 38.8 0.0 1.1e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Pyridox_oxidase PF01243.15 gi|147919857|ref|YP_686392.1| - 4.4e-17 61.8 0.0 8.6e-17 60.9 0.0 1.4 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase DUF447 PF04289.7 gi|147919857|ref|YP_686392.1| - 0.061 12.8 0.0 0.08 12.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF447) Response_reg PF00072.19 gi|147919858|ref|YP_686391.1| - 1.3e-20 73.5 0.6 2e-20 72.8 0.4 1.3 1 0 0 1 1 1 1 Response regulator receiver domain CorA PF01544.13 gi|147919858|ref|YP_686391.1| - 0.015 14.3 1.8 0.023 13.7 1.2 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF883 PF05957.8 gi|147919859|ref|YP_686390.1| - 2.1e-08 34.4 3.5 1e-07 32.2 2.4 1.9 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) DUF1548 PF07579.6 gi|147919859|ref|YP_686390.1| - 0.055 13.5 0.0 0.06 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1548) CtnDOT_TraJ PF07863.6 gi|147919859|ref|YP_686390.1| - 5.1 7.6 8.9 1.2 9.6 0.2 2.7 2 1 0 2 2 2 0 Homologues of TraJ from Bacteroides conjugative transposon Fer4 PF00037.22 gi|147919860|ref|YP_686389.1| - 8.3e-13 47.3 15.4 4.4e-08 32.4 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147919860|ref|YP_686389.1| - 9.4e-13 48.2 39.1 1.9e-08 34.4 10.4 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919860|ref|YP_686389.1| - 1.3e-12 47.2 24.9 1.7e-08 34.1 10.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919860|ref|YP_686389.1| - 1.3e-11 44.7 7.5 7.3e-07 29.4 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919860|ref|YP_686389.1| - 3.1e-10 39.4 14.1 4.2e-06 26.3 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919860|ref|YP_686389.1| - 3e-09 36.2 11.9 0.00018 21.2 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147919860|ref|YP_686389.1| - 5.1e-08 33.1 7.0 0.0001 22.5 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147919860|ref|YP_686389.1| - 7e-08 32.3 22.9 8.5e-05 22.5 9.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919860|ref|YP_686389.1| - 8.4e-08 31.9 12.9 6e-05 23.0 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147919860|ref|YP_686389.1| - 1.2e-07 32.3 12.5 1.2e-05 25.9 1.1 2.4 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147919860|ref|YP_686389.1| - 4.2e-07 29.7 13.5 7.3e-07 28.9 9.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919860|ref|YP_686389.1| - 0.00021 21.6 22.1 0.00062 20.1 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147919860|ref|YP_686389.1| - 0.0004 20.7 14.9 0.0059 17.0 2.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147919860|ref|YP_686389.1| - 0.021 14.7 6.7 0.2 11.5 0.8 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147919860|ref|YP_686389.1| - 0.024 15.1 17.6 0.39 11.3 2.3 2.9 1 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147919860|ref|YP_686389.1| - 0.024 15.0 14.7 1 9.8 1.6 2.9 2 1 0 2 2 2 0 4Fe-4S single cluster domain c-SKI_SMAD_bind PF08782.5 gi|147919860|ref|YP_686389.1| - 0.031 14.4 7.6 0.72 10.0 0.7 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Complex1_49kDa PF00346.14 gi|147919861|ref|YP_686388.1| - 3.4e-43 147.6 0.0 8.4e-34 116.7 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|147919861|ref|YP_686388.1| - 7.2e-13 48.1 3.5 9.9e-12 44.3 0.0 3.0 3 1 0 3 3 3 2 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|147919862|ref|YP_686387.1| - 5.8e-16 58.6 0.0 7.3e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|147919863|ref|YP_686386.1| - 1.4e-23 82.9 1.9 1.9e-23 82.4 1.3 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NADHdh PF00146.16 gi|147919864|ref|YP_686385.1| - 4.9e-24 84.9 20.4 1.1e-23 83.8 14.2 1.4 1 1 0 1 1 1 1 NADH dehydrogenase Oxidored_q1 PF00361.15 gi|147919865|ref|YP_686384.1| - 1.2e-51 175.5 25.7 1.2e-51 175.5 17.8 3.5 3 2 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|147919865|ref|YP_686384.1| - 4.9e-12 45.2 2.5 4.9e-12 45.2 1.7 3.8 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Hydrolase_3 PF08282.7 gi|147919867|ref|YP_686382.1| - 1.5e-22 80.4 0.0 4.9e-12 45.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|147919867|ref|YP_686382.1| - 1.7e-06 27.5 0.0 4.2e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.11 gi|147919867|ref|YP_686382.1| - 0.00013 20.9 0.0 0.033 13.1 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase Glyco_hydro_15 PF00723.16 gi|147919868|ref|YP_686381.1| - 1.5e-40 139.0 0.0 9.6e-36 123.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Glycos_transf_1 PF00534.15 gi|147919869|ref|YP_686380.1| - 2.8e-47 160.3 0.0 4.3e-47 159.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147919869|ref|YP_686380.1| - 1.6e-19 70.3 0.0 3.1e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147919869|ref|YP_686380.1| - 6.4e-13 49.1 0.0 1.5e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|147919869|ref|YP_686380.1| - 6.2e-10 39.2 0.0 1.6e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|147919869|ref|YP_686380.1| - 4e-09 35.4 0.7 2.5e-06 26.2 0.6 2.6 2 1 0 2 2 2 2 Glycosyltransferase family 20 Glyco_transf_4 PF13439.1 gi|147919869|ref|YP_686380.1| - 1.7e-07 31.1 0.0 0.0076 15.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|147919869|ref|YP_686380.1| - 2.7e-07 30.3 0.4 6.7e-07 29.0 0.2 1.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|147919869|ref|YP_686380.1| - 0.0038 17.0 0.1 0.2 11.4 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like tRNA-synt_2 PF00152.15 gi|147919871|ref|YP_686378.1| - 6e-82 275.0 0.0 7.6e-82 274.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|147919871|ref|YP_686378.1| - 8.1e-12 44.8 0.6 1.4e-11 44.0 0.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|147919871|ref|YP_686378.1| - 0.14 11.3 0.0 20 4.2 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) Fae PF08714.6 gi|147919872|ref|YP_686377.1| - 1.3e-70 236.2 0.1 1.5e-70 236.0 0.1 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) CarboxypepD_reg PF13620.1 gi|147919875|ref|YP_686374.1| - 2e-24 85.4 14.2 3.2e-12 46.3 4.1 2.3 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147919875|ref|YP_686374.1| - 6.2e-15 55.0 5.0 6.5e-07 29.3 0.2 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147919875|ref|YP_686374.1| - 1.5e-07 31.1 0.3 0.0041 16.8 0.0 2.5 2 0 0 2 2 2 2 Cna protein B-type domain Big_1 PF02369.11 gi|147919875|ref|YP_686374.1| - 1.5e-05 24.8 5.5 0.00019 21.2 0.9 2.6 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) Pollen_Ole_e_I PF01190.12 gi|147919875|ref|YP_686374.1| - 8.2e-05 22.3 0.2 0.057 13.2 0.0 2.3 2 0 0 2 2 2 2 Pollen proteins Ole e I like MG1 PF11974.3 gi|147919875|ref|YP_686374.1| - 0.00032 21.2 0.7 0.51 10.9 0.1 2.4 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain fn3_3 PF14686.1 gi|147919875|ref|YP_686374.1| - 0.00087 19.3 2.4 0.0098 15.9 0.4 2.3 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II DUF290 PF01060.18 gi|147919875|ref|YP_686374.1| - 0.057 13.4 0.0 7.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Transthyretin-like family MS_channel PF00924.13 gi|147919876|ref|YP_686373.1| - 2.5e-48 164.1 1.6 4.9e-48 163.1 0.1 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel UAF_Rrn10 PF05234.6 gi|147919876|ref|YP_686373.1| - 0.095 12.7 0.1 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 UAF complex subunit Rrn10 Colicin_V PF02674.11 gi|147919876|ref|YP_686373.1| - 0.78 9.5 13.4 6.1 6.6 0.5 2.7 1 1 1 2 2 2 0 Colicin V production protein CBS PF00571.23 gi|147919877|ref|YP_686372.1| - 1.3e-42 143.3 15.7 2.9e-18 65.3 1.5 4.6 4 1 0 4 4 4 4 CBS domain CBS PF00571.23 gi|147919878|ref|YP_686371.1| - 2.4e-41 139.2 12.8 5.8e-12 45.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|147919879|ref|YP_686370.1| - 1.1e-55 185.1 12.9 2.2e-15 56.1 1.2 4.2 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|147919880|ref|YP_686369.1| - 1.6e-56 187.8 8.8 3.6e-14 52.2 0.1 4.1 4 0 0 4 4 4 4 CBS domain CBS PF00571.23 gi|147919881|ref|YP_686368.1| - 8.8e-25 86.2 5.5 4.2e-14 52.0 0.1 2.2 2 0 0 2 2 2 2 CBS domain RRN7 PF11781.3 gi|147919881|ref|YP_686368.1| - 0.038 13.4 1.8 0.071 12.6 1.2 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Gin PF10764.4 gi|147919881|ref|YP_686368.1| - 0.095 12.4 3.7 0.19 11.4 2.6 1.4 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin zf-FPG_IleRS PF06827.9 gi|147919881|ref|YP_686368.1| - 0.21 11.2 1.7 0.7 9.5 1.2 1.8 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-HIT PF04438.11 gi|147919881|ref|YP_686368.1| - 0.77 9.4 3.9 5.5 6.7 2.7 2.0 1 1 0 1 1 1 0 HIT zinc finger GTP_EFTU PF00009.22 gi|147919882|ref|YP_686367.1| - 3.6e-16 59.1 1.0 1.3e-07 31.2 0.1 2.5 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|147919882|ref|YP_686367.1| - 2.2e-15 56.6 0.0 3.2e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.16 gi|147919882|ref|YP_686367.1| - 1.6e-05 24.2 0.0 0.11 11.7 0.0 2.3 2 0 0 2 2 2 2 ADP-ribosylation factor family Miro PF08477.8 gi|147919882|ref|YP_686367.1| - 0.00014 22.3 0.0 0.0039 17.6 0.0 2.2 1 1 0 1 1 1 1 Miro-like protein Septin PF00735.13 gi|147919882|ref|YP_686367.1| - 0.00044 19.3 0.0 0.00078 18.5 0.0 1.3 1 0 0 1 1 1 1 Septin AAA_17 PF13207.1 gi|147919882|ref|YP_686367.1| - 0.00062 20.5 0.0 0.0011 19.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Ras PF00071.17 gi|147919882|ref|YP_686367.1| - 0.00073 18.9 0.0 0.21 10.9 0.0 2.3 2 0 0 2 2 2 1 Ras family FeoB_N PF02421.13 gi|147919882|ref|YP_686367.1| - 0.0009 18.5 0.9 0.012 14.8 0.6 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B NTPase_1 PF03266.10 gi|147919882|ref|YP_686367.1| - 0.0024 17.6 0.1 0.0042 16.7 0.1 1.4 1 0 0 1 1 1 1 NTPase Arch_ATPase PF01637.13 gi|147919882|ref|YP_686367.1| - 0.0029 17.3 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|147919882|ref|YP_686367.1| - 0.0074 16.4 0.1 0.013 15.7 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|147919882|ref|YP_686367.1| - 0.0094 16.2 0.0 0.015 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|147919882|ref|YP_686367.1| - 0.01 15.9 0.0 0.029 14.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|147919882|ref|YP_686367.1| - 0.011 14.9 0.0 0.16 11.2 0.0 2.2 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1_C PF08438.5 gi|147919882|ref|YP_686367.1| - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 GTPase of unknown function C-terminal RNA_helicase PF00910.17 gi|147919882|ref|YP_686367.1| - 0.019 15.1 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Dynamin_N PF00350.18 gi|147919882|ref|YP_686367.1| - 0.037 13.8 0.0 9.2 6.0 0.0 2.2 1 1 0 2 2 2 0 Dynamin family Parvo_NS1 PF01057.12 gi|147919882|ref|YP_686367.1| - 0.045 12.6 0.0 0.079 11.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PRK PF00485.13 gi|147919882|ref|YP_686367.1| - 0.071 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.7 gi|147919882|ref|YP_686367.1| - 0.082 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NB-ARC PF00931.17 gi|147919882|ref|YP_686367.1| - 0.1 11.4 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|147919882|ref|YP_686367.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|147919882|ref|YP_686367.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF2073 PF09846.4 gi|147919883|ref|YP_686366.1| - 3.7e-40 135.7 0.2 4.2e-40 135.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) DUF2072 PF09845.4 gi|147919884|ref|YP_686365.1| - 1.8e-50 170.2 0.0 2.1e-50 170.0 0.0 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) DUF2413 PF10310.4 gi|147919884|ref|YP_686365.1| - 0.06 12.1 0.2 0.071 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) IBR PF01485.16 gi|147919884|ref|YP_686365.1| - 0.33 10.8 3.3 0.6 10.0 2.3 1.4 1 0 0 1 1 1 0 IBR domain TF_Zn_Ribbon PF08271.7 gi|147919884|ref|YP_686365.1| - 1.5 8.1 4.5 15 5.0 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding AA_kinase PF00696.23 gi|147919886|ref|YP_686363.1| - 7.2e-31 107.5 2.2 8.7e-31 107.3 1.5 1.1 1 0 0 1 1 1 1 Amino acid kinase family IU_nuc_hydro PF01156.14 gi|147919886|ref|YP_686363.1| - 0.11 11.6 0.6 0.55 9.3 0.4 2.0 1 1 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase HycI PF01750.13 gi|147919887|ref|YP_686362.1| - 8.4e-28 96.5 1.3 9.7e-28 96.3 0.9 1.0 1 0 0 1 1 1 1 Hydrogenase maturation protease TatD_DNase PF01026.16 gi|147919890|ref|YP_686359.1| - 1.2e-23 83.6 0.0 1.4e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|147919890|ref|YP_686359.1| - 0.061 12.8 0.0 0.33 10.4 0.0 2.1 1 1 0 1 1 1 0 Amidohydrolase AAA_16 PF13191.1 gi|147919891|ref|YP_686358.1| - 1.1e-09 38.5 0.0 8.2e-09 35.7 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|147919891|ref|YP_686358.1| - 3.6e-09 36.8 0.0 6.6e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|147919891|ref|YP_686358.1| - 1.8e-08 34.0 0.4 5.8e-08 32.3 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|147919891|ref|YP_686358.1| - 0.0029 17.3 0.1 0.0092 15.7 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA PF00004.24 gi|147919891|ref|YP_686358.1| - 0.0046 17.1 0.1 0.013 15.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|147919891|ref|YP_686358.1| - 0.017 14.8 0.0 0.094 12.4 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|147919891|ref|YP_686358.1| - 0.024 14.5 0.1 6 6.7 0.0 2.5 1 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|147919891|ref|YP_686358.1| - 0.025 14.1 0.0 0.04 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|147919891|ref|YP_686358.1| - 0.045 12.7 0.1 8.1 5.3 0.2 2.1 1 1 1 2 2 2 0 KAP family P-loop domain NACHT PF05729.7 gi|147919891|ref|YP_686358.1| - 0.046 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF835 PF05763.7 gi|147919891|ref|YP_686358.1| - 0.076 12.5 0.3 0.14 11.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DUF2075 PF09848.4 gi|147919891|ref|YP_686358.1| - 0.14 11.1 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) HHA PF05321.6 gi|147919891|ref|YP_686358.1| - 0.14 12.2 0.3 0.51 10.5 0.0 2.0 2 0 0 2 2 2 0 Haemolysin expression modulating protein Nitro_FeMo-Co PF02579.12 gi|147919892|ref|YP_686357.1| - 2e-19 69.4 0.1 2.3e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor SWIM PF04434.12 gi|147919893|ref|YP_686356.1| - 0.0029 17.0 0.1 0.0043 16.4 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger NIF3 PF01784.13 gi|147919894|ref|YP_686355.1| - 2.8e-51 174.4 0.1 3.3e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Radical_SAM PF04055.16 gi|147919895|ref|YP_686354.1| - 8.1e-32 110.6 0.1 1.3e-31 110.0 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|147919895|ref|YP_686354.1| - 7.6e-22 77.3 0.1 1.3e-21 76.6 0.1 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|147919895|ref|YP_686354.1| - 1.4e-09 38.1 0.0 3e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147919895|ref|YP_686354.1| - 2e-09 37.5 0.0 4.8e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain ILVD_EDD PF00920.16 gi|147919896|ref|YP_686353.1| - 1.9e-218 726.1 2.7 2.2e-218 725.9 1.9 1.0 1 0 0 1 1 1 1 Dehydratase family BMFP PF04380.8 gi|147919896|ref|YP_686353.1| - 0.18 11.9 0.0 0.46 10.6 0.0 1.6 1 0 0 1 1 1 0 Membrane fusogenic activity Rad50_zn_hook PF04423.9 gi|147919896|ref|YP_686353.1| - 0.49 9.8 2.1 1 8.8 1.5 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif Response_reg PF00072.19 gi|147919897|ref|YP_686351.1| - 3.5e-23 81.7 0.1 4e-23 81.5 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain MarC PF01914.12 gi|147919898|ref|YP_686350.1| - 1.2e-55 187.8 19.3 1.4e-55 187.6 13.4 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein TerC PF03741.11 gi|147919898|ref|YP_686350.1| - 1.7e-08 34.0 8.2 1.7e-06 27.6 0.1 2.1 2 0 0 2 2 2 2 Integral membrane protein TerC family TctB PF07331.6 gi|147919898|ref|YP_686350.1| - 1.9 8.1 19.4 1.4 8.5 3.6 2.8 2 1 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF3784 PF12650.2 gi|147919898|ref|YP_686350.1| - 3.8 7.5 15.9 2.5 8.0 0.5 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF3784) DUF1129 PF06570.6 gi|147919898|ref|YP_686350.1| - 9.6 5.4 15.7 3 7.0 1.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1129) DUF2111 PF09884.4 gi|147919899|ref|YP_686349.1| - 2e-30 104.4 0.0 2.6e-30 104.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) DUF2111 PF09884.4 gi|147919900|ref|YP_686348.1| - 1.7e-34 117.4 1.0 2.1e-34 117.1 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) Rib_5-P_isom_A PF06026.9 gi|147919901|ref|YP_686347.1| - 7.4e-57 191.4 0.0 9.3e-57 191.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|147919901|ref|YP_686347.1| - 3.5e-06 26.7 1.6 0.00057 19.5 0.0 2.3 1 1 1 2 2 2 2 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|147919901|ref|YP_686347.1| - 0.038 12.8 0.0 0.081 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative sugar-binding domain EPTP PF03736.12 gi|147919901|ref|YP_686347.1| - 0.056 13.2 0.1 0.094 12.4 0.1 1.4 1 0 0 1 1 1 0 EPTP domain Phos_pyr_kin PF08543.7 gi|147919902|ref|YP_686345.1| - 4.6e-88 294.5 1.0 5.1e-88 294.4 0.7 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|147919902|ref|YP_686345.1| - 8.3e-09 34.9 0.5 1.1e-08 34.5 0.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.10 gi|147919902|ref|YP_686345.1| - 0.0043 16.2 1.6 0.0069 15.5 0.8 1.4 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family DUF3864 PF12980.2 gi|147919903|ref|YP_686344.1| - 0.023 14.8 0.0 0.035 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3864) ABC2_membrane PF01061.19 gi|147919904|ref|YP_686343.1| - 7.4e-29 100.4 21.2 7.4e-29 100.4 14.7 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|147919904|ref|YP_686343.1| - 1.5e-13 50.5 26.5 1.5e-13 50.5 18.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|147919905|ref|YP_686342.1| - 3.4e-31 108.3 0.0 5.2e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919905|ref|YP_686342.1| - 2.9e-16 60.2 0.0 8.9e-11 42.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|147919905|ref|YP_686342.1| - 2.2e-06 27.0 0.0 0.0013 17.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|147919905|ref|YP_686342.1| - 0.0012 18.9 0.2 0.068 13.3 0.1 2.8 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|147919905|ref|YP_686342.1| - 0.0013 18.0 0.0 0.011 15.0 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|147919905|ref|YP_686342.1| - 0.0053 17.1 0.0 0.0086 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|147919905|ref|YP_686342.1| - 0.014 15.3 0.0 0.13 12.1 0.0 2.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|147919905|ref|YP_686342.1| - 0.024 14.5 0.1 0.4 10.6 0.1 2.2 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|147919905|ref|YP_686342.1| - 0.052 12.9 0.1 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|147919905|ref|YP_686342.1| - 0.086 12.2 0.0 0.24 10.8 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|147919905|ref|YP_686342.1| - 0.099 12.5 0.0 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|147919905|ref|YP_686342.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AA_kinase PF00696.23 gi|147919906|ref|YP_686341.1| - 5.2e-51 173.5 0.2 9.5e-51 172.6 0.1 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.20 gi|147919906|ref|YP_686341.1| - 1.2e-24 85.3 1.1 2.3e-12 46.1 0.0 3.2 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.1 gi|147919906|ref|YP_686341.1| - 4.2e-23 80.6 1.3 5.5e-12 45.0 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|147919906|ref|YP_686341.1| - 0.036 13.7 0.1 1.1 9.0 0.0 2.8 2 0 0 2 2 2 0 ACT domain NosD PF05048.8 gi|147919907|ref|YP_686340.1| - 8.5e-48 162.5 35.9 2.9e-39 134.6 11.8 2.9 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|147919907|ref|YP_686340.1| - 3.1e-22 79.0 77.8 1.9e-09 37.4 10.2 3.5 1 1 3 4 4 4 4 Right handed beta helix region PAS_9 PF13426.1 gi|147919908|ref|YP_686339.1| - 1e-57 192.9 0.0 1.2e-14 54.4 0.0 4.4 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|147919908|ref|YP_686339.1| - 2.4e-50 169.1 0.0 5.9e-13 48.8 0.0 4.2 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|147919908|ref|YP_686339.1| - 1.3e-46 156.9 0.0 9.9e-14 51.0 0.0 4.6 4 0 0 4 4 4 4 PAS fold PAS_3 PF08447.6 gi|147919908|ref|YP_686339.1| - 3.2e-39 132.8 0.0 2.2e-11 43.6 0.0 4.5 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|147919908|ref|YP_686339.1| - 3.9e-21 74.0 0.0 0.00038 20.1 0.0 4.5 4 0 0 4 4 4 4 PAS domain PAS_10 PF13596.1 gi|147919908|ref|YP_686339.1| - 6.9e-10 39.1 0.0 0.018 15.3 0.0 4.9 5 0 0 5 5 5 3 PAS domain PAS_11 PF14598.1 gi|147919908|ref|YP_686339.1| - 2.6e-06 27.3 0.0 0.27 11.1 0.0 3.9 4 0 0 4 4 4 1 PAS domain HTH_24 PF13412.1 gi|147919908|ref|YP_686339.1| - 0.00032 20.0 0.0 0.00077 18.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PAS_7 PF12860.2 gi|147919908|ref|YP_686339.1| - 0.00043 20.2 8.5 0.41 10.6 0.5 4.9 4 1 0 4 4 4 1 PAS fold HTH_IclR PF09339.5 gi|147919908|ref|YP_686339.1| - 0.0005 19.6 0.0 0.00098 18.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain IncA PF04156.9 gi|147919908|ref|YP_686339.1| - 0.0019 17.8 3.7 0.0019 17.8 2.6 2.0 3 0 0 3 3 3 1 IncA protein DUF977 PF06163.6 gi|147919908|ref|YP_686339.1| - 0.0026 17.4 0.1 0.037 13.7 0.0 2.5 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF977) TBPIP PF07106.8 gi|147919908|ref|YP_686339.1| - 0.0058 16.1 5.0 0.3 10.6 0.0 2.6 2 0 0 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TrmB PF01978.14 gi|147919908|ref|YP_686339.1| - 0.01 15.5 0.0 0.029 14.0 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|147919908|ref|YP_686339.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 MarR family MoaE PF02391.12 gi|147919908|ref|YP_686339.1| - 0.013 15.2 0.0 0.013 15.2 0.0 4.2 4 1 1 5 5 4 0 MoaE protein OEP PF02321.13 gi|147919908|ref|YP_686339.1| - 0.11 12.1 5.1 0.034 13.7 0.4 2.1 2 0 0 2 2 2 0 Outer membrane efflux protein PEP-utilisers_N PF05524.8 gi|147919908|ref|YP_686339.1| - 1.2 8.8 8.9 1.4e+02 2.2 3.8 4.0 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal EMP24_GP25L PF01105.19 gi|147919908|ref|YP_686339.1| - 1.5 8.5 8.7 37 3.9 1.7 3.2 3 0 0 3 3 3 0 emp24/gp25L/p24 family/GOLD Mnd1 PF03962.10 gi|147919908|ref|YP_686339.1| - 6.7 6.3 12.0 6.1 6.4 5.6 2.6 2 1 0 2 2 2 0 Mnd1 family AIRS_C PF02769.17 gi|147919909|ref|YP_686338.1| - 4.4e-23 81.9 0.0 6.6e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|147919909|ref|YP_686338.1| - 7.1e-18 64.6 0.4 5e-17 61.9 0.1 2.3 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain CTP_transf_1 PF01148.15 gi|147919910|ref|YP_686337.1| - 1.1e-05 25.2 11.8 9.9e-05 22.1 8.2 2.0 1 1 0 1 1 1 1 Cytidylyltransferase family PsaL PF02605.10 gi|147919910|ref|YP_686337.1| - 0.02 14.4 0.5 0.039 13.4 0.4 1.5 1 0 0 1 1 1 0 Photosystem I reaction centre subunit XI zinc_ribbon_2 PF13240.1 gi|147919911|ref|YP_686336.1| - 0.0002 20.7 2.0 0.00037 19.8 1.4 1.5 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|147919911|ref|YP_686336.1| - 0.00025 20.7 0.4 0.00042 20.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF1469 PF07332.6 gi|147919911|ref|YP_686336.1| - 0.0003 20.4 3.5 0.00039 20.1 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) Prok-RING_1 PF14446.1 gi|147919911|ref|YP_686336.1| - 0.0013 18.4 0.9 0.0021 17.7 0.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|147919911|ref|YP_686336.1| - 0.0016 17.5 4.8 0.0089 15.2 3.3 1.9 1 1 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|147919911|ref|YP_686336.1| - 0.0097 15.5 1.2 1.1 9.0 0.1 2.3 2 0 0 2 2 2 1 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|147919911|ref|YP_686336.1| - 0.027 14.1 2.3 0.16 11.6 0.1 2.7 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain PyrI_C PF02748.10 gi|147919911|ref|YP_686336.1| - 0.031 13.7 0.6 0.06 12.7 0.2 1.6 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF329 PF03884.9 gi|147919911|ref|YP_686336.1| - 0.033 13.7 0.5 0.033 13.7 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) HypA PF01155.14 gi|147919911|ref|YP_686336.1| - 0.039 13.6 0.3 0.07 12.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1418 PF07214.7 gi|147919911|ref|YP_686336.1| - 0.062 12.9 0.7 0.095 12.3 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1418) UPF0547 PF10571.4 gi|147919911|ref|YP_686336.1| - 0.071 12.8 1.7 0.17 11.6 1.2 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2244 PF10003.4 gi|147919911|ref|YP_686336.1| - 0.072 12.4 1.0 0.11 11.8 0.7 1.3 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) zinc_ribbon_5 PF13719.1 gi|147919911|ref|YP_686336.1| - 0.13 11.8 0.8 6.9 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|147919911|ref|YP_686336.1| - 0.14 11.8 0.9 8.3 6.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|147919911|ref|YP_686336.1| - 0.16 12.3 2.9 12 6.3 2.0 2.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.8 gi|147919911|ref|YP_686336.1| - 0.33 10.4 3.3 1.7 8.1 2.4 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-Mss51 PF13824.1 gi|147919911|ref|YP_686336.1| - 0.37 10.6 5.3 4.6 7.1 0.1 2.8 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|147919911|ref|YP_686336.1| - 0.62 9.4 2.9 1.6 8.1 2.0 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding Radical_SAM PF04055.16 gi|147919913|ref|YP_686334.1| - 8.5e-21 74.8 0.1 1.5e-20 74.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|147919913|ref|YP_686334.1| - 3.5e-08 33.6 0.1 1.2e-07 31.9 0.1 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|147919913|ref|YP_686334.1| - 2.4e-07 30.9 0.0 5.5e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147919913|ref|YP_686334.1| - 7.3e-07 29.2 0.1 1.8e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Sigma70_r1_1 PF03979.9 gi|147919913|ref|YP_686334.1| - 0.09 12.7 0.0 2.8 7.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 AP_endonuc_2 PF01261.19 gi|147919913|ref|YP_686334.1| - 0.13 11.5 0.0 0.55 9.4 0.0 1.9 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Fer4_18 PF13746.1 gi|147919914|ref|YP_686333.1| - 5.6e-05 23.4 7.0 0.0064 16.8 0.0 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919914|ref|YP_686333.1| - 0.00019 21.1 12.9 0.00031 20.4 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919914|ref|YP_686333.1| - 0.0002 22.0 14.2 0.00088 19.9 9.8 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_11 PF13247.1 gi|147919914|ref|YP_686333.1| - 0.00021 21.1 3.7 0.00033 20.4 2.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147919914|ref|YP_686333.1| - 0.00026 20.4 18.0 0.00038 19.9 3.5 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147919914|ref|YP_686333.1| - 0.00036 20.8 14.1 0.00073 19.8 9.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919914|ref|YP_686333.1| - 0.00059 20.0 13.8 0.0015 18.7 9.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147919914|ref|YP_686333.1| - 0.0024 17.6 4.7 0.0024 17.6 3.2 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147919914|ref|YP_686333.1| - 0.0035 17.3 11.0 0.0067 16.4 0.2 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147919914|ref|YP_686333.1| - 0.06 13.7 16.9 0.067 13.5 3.1 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919914|ref|YP_686333.1| - 0.43 10.4 14.3 0.32 10.8 2.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919914|ref|YP_686333.1| - 0.96 9.8 12.4 2.9 8.2 8.6 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147919914|ref|YP_686333.1| - 1.6 9.4 20.5 1.2 9.8 4.2 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147919914|ref|YP_686333.1| - 2.6 8.1 19.5 0.28 11.1 3.2 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain RhodobacterPufX PF11511.3 gi|147919915|ref|YP_686332.1| - 0.034 13.5 0.8 0.078 12.3 0.6 1.5 1 0 0 1 1 1 0 Intrinsic membrane protein PufX CARDB PF07705.6 gi|147919915|ref|YP_686332.1| - 0.039 13.9 0.0 0.065 13.3 0.0 1.4 1 1 0 1 1 1 0 CARDB PKD PF00801.15 gi|147919915|ref|YP_686332.1| - 0.1 12.3 3.8 4.5 7.0 0.4 2.8 2 1 0 2 2 2 0 PKD domain fn3 PF00041.16 gi|147919915|ref|YP_686332.1| - 0.15 12.2 0.4 5.2 7.2 0.0 2.4 2 0 0 2 2 2 0 Fibronectin type III domain Acetyltransf_1 PF00583.19 gi|147919917|ref|YP_686330.1| - 9.1e-15 54.4 1.6 4e-14 52.3 0.1 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147919917|ref|YP_686330.1| - 9.7e-11 41.6 0.1 2.2e-10 40.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147919917|ref|YP_686330.1| - 2.5e-10 40.4 0.2 1e-06 28.8 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147919917|ref|YP_686330.1| - 3.6e-06 26.6 0.2 7.6e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|147919917|ref|YP_686330.1| - 0.0011 18.8 0.0 0.0027 17.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147919917|ref|YP_686330.1| - 0.014 15.5 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147919917|ref|YP_686330.1| - 0.031 14.1 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NHL PF01436.16 gi|147919919|ref|YP_686328.1| - 3.4e-14 51.9 16.1 0.00046 20.0 0.2 6.0 5 0 0 5 5 5 4 NHL repeat FlgD_ig PF13860.1 gi|147919919|ref|YP_686328.1| - 6.2e-13 48.2 0.8 8.9e-12 44.5 0.0 3.0 3 0 0 3 3 3 1 FlgD Ig-like domain Big_3_4 PF13754.1 gi|147919919|ref|YP_686328.1| - 1.2e-07 31.9 7.5 0.0032 17.7 0.0 5.2 5 1 0 5 5 5 2 Bacterial Ig-like domain (group 3) CHB_HEX_C PF03174.8 gi|147919919|ref|YP_686328.1| - 9.6e-06 25.3 1.1 0.019 14.8 0.0 3.8 3 0 0 3 3 3 1 Chitobiase/beta-hexosaminidase C-terminal domain SGL PF08450.7 gi|147919919|ref|YP_686328.1| - 0.0002 20.7 0.6 0.37 10.1 0.0 4.4 3 1 2 5 5 5 1 SMP-30/Gluconolaconase/LRE-like region CHB_HEX_C_1 PF13290.1 gi|147919919|ref|YP_686328.1| - 0.00031 20.4 3.8 0.022 14.5 0.0 3.9 4 0 0 4 4 4 1 Chitobiase/beta-hexosaminidase C-terminal domain DUF1180 PF06679.7 gi|147919919|ref|YP_686328.1| - 0.011 15.6 1.5 0.022 14.6 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) DUF1622 PF07784.6 gi|147919920|ref|YP_686327.1| - 1.6e-27 94.9 0.4 2.8e-27 94.1 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) DUF373 PF04123.8 gi|147919920|ref|YP_686327.1| - 0.032 13.2 0.7 0.036 13.0 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Chromate_transp PF02417.10 gi|147919920|ref|YP_686327.1| - 0.052 13.1 3.7 0.066 12.8 2.6 1.1 1 0 0 1 1 1 0 Chromate transporter EamA PF00892.15 gi|147919920|ref|YP_686327.1| - 0.43 10.6 4.8 0.13 12.2 0.7 1.8 1 1 1 2 2 2 0 EamA-like transporter family DUF1097 PF06496.6 gi|147919921|ref|YP_686326.1| - 0.0027 17.5 0.3 0.0032 17.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1097) RseC_MucC PF04246.7 gi|147919921|ref|YP_686326.1| - 0.16 11.5 1.3 0.23 11.0 0.9 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Mid2 PF04478.7 gi|147919921|ref|YP_686326.1| - 0.2 11.0 0.7 0.24 10.7 0.5 1.1 1 0 0 1 1 1 0 Mid2 like cell wall stress sensor DUF3487 PF11990.3 gi|147919921|ref|YP_686326.1| - 0.61 9.4 3.2 0.94 8.8 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) AAA PF00004.24 gi|147919922|ref|YP_686325.1| - 9.2e-12 45.3 0.0 1.8e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|147919922|ref|YP_686325.1| - 1.9e-09 36.7 0.0 0.0014 17.4 0.0 2.5 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|147919922|ref|YP_686325.1| - 1.9e-05 23.8 0.0 8.8e-05 21.6 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|147919922|ref|YP_686325.1| - 6.5e-05 23.0 0.2 0.019 15.1 0.1 2.9 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.8 gi|147919922|ref|YP_686325.1| - 0.00055 18.9 0.0 0.0022 16.9 0.0 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF815) AAA_17 PF13207.1 gi|147919922|ref|YP_686325.1| - 0.00062 20.5 0.9 0.0019 18.9 0.0 2.3 3 0 0 3 3 2 1 AAA domain TIP49 PF06068.8 gi|147919922|ref|YP_686325.1| - 0.00093 18.0 0.8 0.018 13.7 0.0 2.3 3 0 0 3 3 3 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|147919922|ref|YP_686325.1| - 0.0012 18.0 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|147919922|ref|YP_686325.1| - 0.002 17.5 0.8 0.058 12.7 0.2 2.4 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|147919922|ref|YP_686325.1| - 0.0029 17.5 0.0 0.0051 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147919922|ref|YP_686325.1| - 0.0044 17.0 0.0 0.042 13.8 0.0 2.5 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|147919922|ref|YP_686325.1| - 0.0048 16.3 0.1 0.0089 15.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_28 PF13521.1 gi|147919922|ref|YP_686325.1| - 0.015 15.2 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|147919922|ref|YP_686325.1| - 0.021 14.5 0.0 0.065 12.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|147919922|ref|YP_686325.1| - 0.041 13.6 0.0 0.09 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|147919922|ref|YP_686325.1| - 0.049 12.7 0.0 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|147919922|ref|YP_686325.1| - 0.05 13.7 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|147919922|ref|YP_686325.1| - 0.083 12.5 0.1 1.2 8.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_18 PF13238.1 gi|147919922|ref|YP_686325.1| - 0.086 13.1 0.0 0.34 11.2 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|147919922|ref|YP_686325.1| - 0.1 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|147919922|ref|YP_686325.1| - 0.21 10.5 0.1 2.2 7.1 0.0 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AIRS PF00586.19 gi|147919923|ref|YP_686324.1| - 4.6e-17 62.0 0.1 9.1e-17 61.0 0.1 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|147919923|ref|YP_686324.1| - 8.8e-14 51.7 0.0 1.5e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Iso_dh PF00180.15 gi|147919924|ref|YP_686323.1| - 5.4e-90 301.8 0.0 6.3e-90 301.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_CG PF14542.1 gi|147919924|ref|YP_686323.1| - 0.014 15.2 0.2 3.2 7.7 0.0 2.5 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase DUF336 PF03928.9 gi|147919924|ref|YP_686323.1| - 0.076 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF336) Abhydrolase_5 PF12695.2 gi|147919925|ref|YP_686322.1| - 5.9e-14 52.0 0.0 7.6e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|147919925|ref|YP_686322.1| - 3.9e-13 49.8 0.1 7.4e-13 48.8 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|147919925|ref|YP_686322.1| - 2.6e-07 30.4 0.1 5.4e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Lipase_3 PF01764.20 gi|147919925|ref|YP_686322.1| - 1e-05 25.1 0.2 2e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Lipase (class 3) DLH PF01738.13 gi|147919925|ref|YP_686322.1| - 1e-05 24.9 0.3 0.00043 19.6 0.2 2.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|147919925|ref|YP_686322.1| - 0.0011 18.5 0.1 0.0021 17.6 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF676 PF05057.9 gi|147919925|ref|YP_686322.1| - 0.014 14.7 0.1 0.029 13.6 0.0 1.6 2 0 0 2 2 2 0 Putative serine esterase (DUF676) DUF2048 PF09752.4 gi|147919925|ref|YP_686322.1| - 0.015 14.1 0.0 0.22 10.3 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Acyl_transf_1 PF00698.16 gi|147919925|ref|YP_686322.1| - 0.036 13.3 0.0 0.047 13.0 0.0 1.1 1 0 0 1 1 1 0 Acyl transferase domain AXE1 PF05448.7 gi|147919925|ref|YP_686322.1| - 0.046 12.2 0.9 1.6 7.1 0.0 2.1 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) Thioesterase PF00975.15 gi|147919925|ref|YP_686322.1| - 0.064 13.4 0.1 0.097 12.8 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain DUF2974 PF11187.3 gi|147919925|ref|YP_686322.1| - 0.14 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PGAP1 PF07819.8 gi|147919925|ref|YP_686322.1| - 0.32 10.5 1.2 1 8.8 0.9 1.8 1 1 0 1 1 1 0 PGAP1-like protein Flavodoxin_3 PF12641.2 gi|147919926|ref|YP_686321.1| - 0.0044 16.4 0.0 0.025 13.9 0.0 1.7 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|147919926|ref|YP_686321.1| - 0.033 14.1 0.0 0.034 14.1 0.0 1.1 1 0 0 1 1 1 0 Flavodoxin domain DUF2064 PF09837.4 gi|147919927|ref|YP_686320.1| - 1.4 8.5 11.7 11 5.6 0.0 5.1 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2064) Lactamase_B_2 PF12706.2 gi|147919928|ref|YP_686319.1| - 5.2e-22 78.3 0.3 7.4e-22 77.8 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|147919928|ref|YP_686319.1| - 6e-12 45.5 0.2 6.4e-11 42.2 0.2 2.2 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147919928|ref|YP_686319.1| - 3.3e-05 23.6 3.8 0.00013 21.6 2.5 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HMGL-like PF00682.14 gi|147919929|ref|YP_686318.1| - 6.4e-36 124.2 0.0 8.5e-36 123.7 0.0 1.2 1 0 0 1 1 1 1 HMGL-like DUF2196 PF09962.4 gi|147919930|ref|YP_686317.1| - 4.4e-31 106.4 3.3 5e-31 106.2 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) TrmB PF01978.14 gi|147919931|ref|YP_686316.1| - 7.6e-21 73.5 0.1 1.3e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|147919931|ref|YP_686316.1| - 3.3e-08 32.7 0.0 4.7e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc_2 PF13091.1 gi|147919931|ref|YP_686316.1| - 6.8e-05 22.6 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 PLD-like domain HTH_20 PF12840.2 gi|147919931|ref|YP_686316.1| - 7.4e-05 22.4 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|147919931|ref|YP_686316.1| - 0.00021 20.8 0.2 0.00058 19.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|147919931|ref|YP_686316.1| - 0.00044 19.8 0.0 0.001 18.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147919931|ref|YP_686316.1| - 0.00083 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.1 gi|147919931|ref|YP_686316.1| - 0.006 16.7 0.2 0.013 15.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_27 PF13463.1 gi|147919931|ref|YP_686316.1| - 0.0074 16.5 0.0 0.15 12.3 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|147919931|ref|YP_686316.1| - 0.01 15.2 0.0 0.022 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|147919931|ref|YP_686316.1| - 0.017 14.8 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|147919931|ref|YP_686316.1| - 0.029 14.3 0.0 0.07 13.0 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|147919931|ref|YP_686316.1| - 0.031 14.3 0.0 0.06 13.4 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_28 PF13518.1 gi|147919931|ref|YP_686316.1| - 0.037 14.0 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|147919931|ref|YP_686316.1| - 0.039 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF3618 PF12277.3 gi|147919931|ref|YP_686316.1| - 0.047 13.7 2.1 0.11 12.5 0.0 2.5 3 0 0 3 3 2 0 Protein of unknown function (DUF3618) GntR PF00392.16 gi|147919931|ref|YP_686316.1| - 0.054 12.9 0.1 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|147919931|ref|YP_686316.1| - 0.11 12.1 0.1 0.33 10.6 0.0 1.8 2 0 0 2 2 1 0 Homeodomain-like domain Rrf2 PF02082.15 gi|147919931|ref|YP_686316.1| - 0.12 12.4 0.0 0.33 11.0 0.0 1.8 1 1 0 1 1 1 0 Transcriptional regulator DUF1192 PF06698.6 gi|147919931|ref|YP_686316.1| - 0.19 11.5 1.1 8 6.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) HMA PF00403.21 gi|147919932|ref|YP_686315.1| - 1.4e-13 50.7 0.4 1.8e-13 50.4 0.2 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Tox-PL-2 PF15643.1 gi|147919932|ref|YP_686315.1| - 0.057 13.4 0.0 0.061 13.3 0.0 1.1 1 0 0 1 1 1 0 Papain fold toxin 2 DUF1847 PF08901.6 gi|147919932|ref|YP_686315.1| - 0.059 12.8 0.0 0.07 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1847) E1-E2_ATPase PF00122.15 gi|147919933|ref|YP_001218857.1| - 4.1e-52 176.5 0.3 4.1e-52 176.5 0.2 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147919933|ref|YP_001218857.1| - 7.9e-45 153.8 4.0 1.3e-44 153.2 2.8 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147919933|ref|YP_001218857.1| - 8.1e-20 71.8 0.0 2e-19 70.5 0.0 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|147919933|ref|YP_001218857.1| - 0.0036 16.9 5.3 0.065 12.8 2.2 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF2148 PF09918.4 gi|147919933|ref|YP_001218857.1| - 0.022 14.4 2.1 0.066 12.9 1.5 1.7 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) Acetyltransf_1 PF00583.19 gi|147919934|ref|YP_686313.1| - 1.9e-14 53.4 0.0 2.7e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|147919934|ref|YP_686313.1| - 1.1e-13 51.4 0.0 1.2e-13 51.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147919934|ref|YP_686313.1| - 7.1e-12 45.6 0.0 8.2e-12 45.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147919934|ref|YP_686313.1| - 8.7e-12 45.1 0.0 1.1e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147919934|ref|YP_686313.1| - 4.1e-10 39.6 0.0 5.8e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147919934|ref|YP_686313.1| - 1e-06 28.6 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147919934|ref|YP_686313.1| - 3e-06 27.1 0.0 3.9e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147919934|ref|YP_686313.1| - 5.1e-06 26.1 0.0 8.2e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|147919934|ref|YP_686313.1| - 0.00033 20.4 0.0 0.0005 19.8 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase TrmB PF01978.14 gi|147919935|ref|YP_686312.1| - 1.4e-18 66.3 0.2 3.1e-18 65.2 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|147919935|ref|YP_686312.1| - 6.9e-08 31.7 0.0 1e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.5 gi|147919935|ref|YP_686312.1| - 0.00037 20.0 0.1 0.00072 19.0 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Motilin_ghrelin PF04644.7 gi|147919935|ref|YP_686312.1| - 0.11 12.3 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 Motilin/ghrelin Lactate_perm PF02652.9 gi|147919936|ref|YP_686311.1| - 6.9e-45 153.5 60.8 2.3e-43 148.5 42.1 2.0 1 1 0 1 1 1 1 L-lactate permease Lactate_perm PF02652.9 gi|147919937|ref|YP_686310.1| - 3.9e-43 147.7 59.0 8.4e-42 143.3 40.9 1.9 1 1 0 1 1 1 1 L-lactate permease Sigma70_r4_2 PF08281.7 gi|147919938|ref|YP_686309.1| - 0.093 12.2 0.2 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 ATP_synth_reg PF14960.1 gi|147919938|ref|YP_686309.1| - 0.22 10.7 0.9 0.31 10.2 0.1 1.7 2 0 0 2 2 2 0 ATP synthase regulation PGK PF00162.14 gi|147919939|ref|YP_686308.1| - 1.6e-121 405.5 0.3 1.8e-121 405.3 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF1290 PF06947.7 gi|147919939|ref|YP_686308.1| - 0.082 12.8 0.1 0.19 11.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1290) Semialdhyde_dh PF01118.19 gi|147919940|ref|YP_686307.1| - 1.3e-13 51.2 0.0 6e-12 45.9 0.0 2.3 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DUF1284 PF06935.6 gi|147919941|ref|YP_686306.1| - 3.9e-29 100.8 0.2 4.7e-29 100.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1284) ABC_tran PF00005.22 gi|147919942|ref|YP_686305.1| - 2.3e-27 95.9 0.0 3.4e-27 95.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919942|ref|YP_686305.1| - 6.9e-15 55.7 0.1 2e-08 34.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919942|ref|YP_686305.1| - 1.1e-10 41.1 0.1 3.1e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|147919942|ref|YP_686305.1| - 7.4e-06 25.4 0.0 1.5e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|147919942|ref|YP_686305.1| - 8.6e-05 21.7 0.0 0.076 12.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|147919942|ref|YP_686305.1| - 0.00022 21.5 0.0 0.00034 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|147919942|ref|YP_686305.1| - 0.00093 17.7 0.2 0.31 9.4 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|147919942|ref|YP_686305.1| - 0.0012 18.2 0.1 0.051 13.0 0.0 2.2 1 1 1 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|147919942|ref|YP_686305.1| - 0.0015 18.6 0.1 0.0083 16.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|147919942|ref|YP_686305.1| - 0.0021 18.3 0.1 0.066 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|147919942|ref|YP_686305.1| - 0.003 18.3 0.3 0.0064 17.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|147919942|ref|YP_686305.1| - 0.0038 17.2 0.0 0.009 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|147919942|ref|YP_686305.1| - 0.0083 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|147919942|ref|YP_686305.1| - 0.011 15.6 0.0 0.029 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|147919942|ref|YP_686305.1| - 0.011 14.9 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|147919942|ref|YP_686305.1| - 0.011 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family SbcCD_C PF13558.1 gi|147919942|ref|YP_686305.1| - 0.021 14.7 0.0 0.26 11.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|147919942|ref|YP_686305.1| - 0.043 12.5 0.0 0.12 11.1 0.0 1.7 2 0 0 2 2 2 0 ArgK protein Dynamin_N PF00350.18 gi|147919942|ref|YP_686305.1| - 0.047 13.5 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 Dynamin family AAA_16 PF13191.1 gi|147919942|ref|YP_686305.1| - 0.052 13.5 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|147919942|ref|YP_686305.1| - 0.054 13.1 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|147919942|ref|YP_686305.1| - 0.056 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|147919942|ref|YP_686305.1| - 0.075 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|147919942|ref|YP_686305.1| - 0.082 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|147919942|ref|YP_686305.1| - 0.13 11.6 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|147919942|ref|YP_686305.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_ATPase PF09818.4 gi|147919942|ref|YP_686305.1| - 0.13 10.7 0.1 1.2 7.6 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.14 gi|147919942|ref|YP_686305.1| - 0.16 11.4 0.0 0.48 9.8 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Succ_CoA_lig PF13607.1 gi|147919943|ref|YP_686304.1| - 1.6e-54 183.2 2.8 1e-52 177.3 0.3 3.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|147919943|ref|YP_686304.1| - 1.7e-25 89.4 0.2 1.4e-24 86.4 0.0 2.5 2 1 1 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|147919943|ref|YP_686304.1| - 1.3e-14 54.4 0.9 1.6e-13 50.9 0.0 2.7 3 0 0 3 3 3 1 CoA binding domain Peripla_BP_3 PF13377.1 gi|147919943|ref|YP_686304.1| - 0.036 14.0 0.1 0.11 12.5 0.0 1.8 1 1 1 2 2 2 0 Periplasmic binding protein-like domain Dak1_2 PF13684.1 gi|147919943|ref|YP_686304.1| - 0.039 12.9 0.0 0.17 10.8 0.0 1.9 2 0 0 2 2 2 0 Dihydroxyacetone kinase family DEDD_Tnp_IS110 PF01548.12 gi|147919943|ref|YP_686304.1| - 0.077 12.6 0.1 0.42 10.2 0.0 2.1 2 0 0 2 2 2 0 Transposase ATP-grasp_5 PF13549.1 gi|147919944|ref|YP_686303.1| - 1.4e-68 230.4 1.2 1.5e-68 230.3 0.8 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|147919944|ref|YP_686303.1| - 6.7e-05 22.3 0.0 0.00092 18.6 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain IPT PF01745.11 gi|147919944|ref|YP_686303.1| - 0.023 13.9 0.0 0.037 13.1 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase ATP-grasp_4 PF13535.1 gi|147919944|ref|YP_686303.1| - 0.088 12.5 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain HRDC PF00570.18 gi|147919945|ref|YP_686301.1| - 1.7e-23 82.0 0.0 5.7e-23 80.4 0.0 2.0 2 0 0 2 2 2 1 HRDC domain Helicase_C PF00271.26 gi|147919945|ref|YP_686301.1| - 2.5e-21 75.3 0.0 4.6e-20 71.2 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain RQC PF09382.5 gi|147919945|ref|YP_686301.1| - 6.1e-20 70.9 0.0 3.5e-19 68.4 0.0 2.1 2 0 0 2 2 2 1 RQC domain DEAD PF00270.24 gi|147919945|ref|YP_686301.1| - 1.9e-17 63.2 0.0 4.5e-17 62.0 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|147919945|ref|YP_686301.1| - 0.029 13.1 0.0 0.044 12.5 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain ResIII PF04851.10 gi|147919945|ref|YP_686301.1| - 0.17 11.7 0.0 0.45 10.3 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DDE_Tnp_1 PF01609.16 gi|147919947|ref|YP_686299.1| - 5.3e-09 35.9 0.5 7e-09 35.5 0.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DUF72 PF01904.13 gi|147919948|ref|YP_686298.1| - 5.4e-45 153.9 0.0 6.2e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|147919948|ref|YP_686298.1| - 0.023 13.9 0.0 0.1 11.8 0.0 2.0 1 1 2 3 3 3 0 Xylose isomerase-like TIM barrel RRM_1 PF00076.17 gi|147919948|ref|YP_686298.1| - 0.037 13.6 0.0 0.085 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CbiQ PF02361.11 gi|147919949|ref|YP_686297.1| - 5.5e-18 65.3 13.7 2.6e-17 63.1 9.5 1.8 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|147919950|ref|YP_686296.1| - 4.7e-26 91.7 0.0 3.4e-25 88.9 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|147919950|ref|YP_686296.1| - 8e-22 78.5 0.0 4.1e-13 49.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919950|ref|YP_686296.1| - 2.3e-07 30.2 0.0 0.0029 16.8 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|147919950|ref|YP_686296.1| - 2.6e-05 23.4 0.0 0.11 11.5 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|147919950|ref|YP_686296.1| - 0.00041 20.7 0.0 0.00061 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|147919950|ref|YP_686296.1| - 0.00088 19.7 0.0 0.0017 18.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein AAA_29 PF13555.1 gi|147919950|ref|YP_686296.1| - 0.00096 18.6 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|147919950|ref|YP_686296.1| - 0.0016 18.5 0.1 0.015 15.4 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|147919950|ref|YP_686296.1| - 0.0016 18.4 0.2 0.0052 16.7 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|147919950|ref|YP_686296.1| - 0.0057 16.1 0.1 0.055 12.8 0.1 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|147919950|ref|YP_686296.1| - 0.015 15.1 0.1 0.021 14.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|147919950|ref|YP_686296.1| - 0.017 14.3 0.0 0.026 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|147919950|ref|YP_686296.1| - 0.043 13.4 0.1 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Dynamin_N PF00350.18 gi|147919950|ref|YP_686296.1| - 0.058 13.2 0.0 0.09 12.5 0.0 1.3 1 0 0 1 1 1 0 Dynamin family AAA_25 PF13481.1 gi|147919950|ref|YP_686296.1| - 0.06 12.7 0.1 0.14 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|147919950|ref|YP_686296.1| - 0.061 14.1 0.6 0.17 12.6 0.1 1.9 2 2 0 2 2 2 0 AAA domain HAD PF12710.2 gi|147919950|ref|YP_686296.1| - 0.066 13.3 0.0 0.087 12.9 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase MobB PF03205.9 gi|147919950|ref|YP_686296.1| - 0.087 12.5 0.1 0.2 11.3 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|147919950|ref|YP_686296.1| - 0.095 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_13 PF13166.1 gi|147919950|ref|YP_686296.1| - 0.14 10.5 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|147919950|ref|YP_686296.1| - 0.15 11.7 0.0 0.51 10.0 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|147919950|ref|YP_686296.1| - 0.16 11.9 0.0 0.36 10.8 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|147919951|ref|YP_686295.1| - 1.5e-29 103.0 0.0 2e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919951|ref|YP_686295.1| - 2.1e-10 41.0 0.0 0.00019 21.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147919951|ref|YP_686295.1| - 1.7e-09 37.2 0.0 7.5e-07 28.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|147919951|ref|YP_686295.1| - 0.00046 20.0 0.1 0.0075 16.1 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|147919951|ref|YP_686295.1| - 0.00098 18.6 0.0 0.0023 17.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|147919951|ref|YP_686295.1| - 0.021 15.6 0.0 0.051 14.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|147919951|ref|YP_686295.1| - 0.031 14.5 0.0 0.045 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|147919951|ref|YP_686295.1| - 0.034 13.5 0.0 3.6 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|147919951|ref|YP_686295.1| - 0.067 13.1 0.2 0.2 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|147919951|ref|YP_686295.1| - 0.095 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|147919951|ref|YP_686295.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.1 gi|147919951|ref|YP_686295.1| - 0.11 12.8 0.1 0.25 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain BioY PF02632.9 gi|147919952|ref|YP_686294.1| - 9.4e-42 142.1 19.7 1.4e-41 141.6 13.7 1.2 1 0 0 1 1 1 1 BioY family ECF-ribofla_trS PF07155.7 gi|147919952|ref|YP_686294.1| - 4.9e-05 23.1 23.1 0.013 15.2 16.0 3.0 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|147919952|ref|YP_686294.1| - 0.0017 18.2 25.2 0.0027 17.6 17.5 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) Pox_A9 PF04835.7 gi|147919952|ref|YP_686294.1| - 0.13 12.1 0.2 0.4 10.6 0.1 1.8 1 0 0 1 1 1 0 A9 protein conserved region LRR19-TM PF15176.1 gi|147919952|ref|YP_686294.1| - 0.82 9.4 2.7 0.44 10.2 0.1 1.8 1 1 1 2 2 2 0 Leucine-rich repeat family 19 TM domain RCC1 PF00415.13 gi|147919953|ref|YP_686293.1| - 7.2e-72 237.4 32.9 9.8e-13 48.1 0.3 7.7 8 0 0 8 8 8 7 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|147919953|ref|YP_686293.1| - 1.8e-46 154.7 47.4 2.1e-13 49.4 0.6 8.1 7 1 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat BPL_LplA_LipB PF03099.14 gi|147919954|ref|YP_686292.1| - 7.3e-21 74.4 0.1 1.3e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|147919954|ref|YP_686292.1| - 7.5e-16 57.5 0.1 2.1e-15 56.0 0.1 1.8 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|147919954|ref|YP_686292.1| - 4.5e-13 48.6 0.2 8.3e-13 47.8 0.1 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_24 PF13412.1 gi|147919954|ref|YP_686292.1| - 3.4e-06 26.3 0.1 9.8e-06 24.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|147919954|ref|YP_686292.1| - 0.0012 18.7 0.2 0.0036 17.2 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|147919954|ref|YP_686292.1| - 0.01 15.5 0.0 0.66 9.8 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|147919954|ref|YP_686292.1| - 0.011 15.4 0.1 0.032 13.9 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.1 gi|147919954|ref|YP_686292.1| - 0.033 13.7 0.2 0.1 12.1 0.1 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_6 PF01418.12 gi|147919954|ref|YP_686292.1| - 0.041 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_23 PF13384.1 gi|147919954|ref|YP_686292.1| - 0.041 13.5 0.3 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_22 PF13309.1 gi|147919954|ref|YP_686292.1| - 0.047 13.4 0.0 1.9 8.2 0.0 2.8 2 1 0 2 2 2 0 HTH domain MarR_2 PF12802.2 gi|147919954|ref|YP_686292.1| - 0.1 12.2 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF2088 PF09861.4 gi|147919956|ref|YP_686290.1| - 1.1e-72 243.3 0.1 2.9e-72 241.9 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|147919956|ref|YP_686290.1| - 4.4e-05 23.0 0.0 7.6e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF362) CCG PF02754.11 gi|147919957|ref|YP_686289.1| - 2.5e-29 101.0 3.4 1.2e-14 54.0 0.2 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|147919957|ref|YP_686289.1| - 1.1e-09 38.2 7.7 1.1e-09 38.2 5.3 2.9 3 1 1 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147919957|ref|YP_686289.1| - 2.4e-08 34.2 8.4 2.4e-08 34.2 5.8 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147919957|ref|YP_686289.1| - 1.7e-06 28.2 7.4 1.7e-06 28.2 5.2 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147919957|ref|YP_686289.1| - 6.1e-06 25.9 10.3 6.1e-06 25.9 7.1 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147919957|ref|YP_686289.1| - 0.0017 19.0 8.3 0.0017 19.0 5.8 2.7 3 1 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|147919957|ref|YP_686289.1| - 0.0027 17.2 2.3 0.0027 17.2 1.6 3.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147919957|ref|YP_686289.1| - 0.005 16.6 15.5 0.12 12.2 0.4 4.0 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147919957|ref|YP_686289.1| - 0.025 14.5 2.3 0.025 14.5 1.6 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Integrase_Zn PF02022.14 gi|147919957|ref|YP_686289.1| - 0.074 12.5 0.8 3.8 7.0 0.1 2.9 2 1 0 2 2 2 0 Integrase Zinc binding domain Methyltransf_25 PF13649.1 gi|147919957|ref|YP_686289.1| - 0.079 13.3 0.1 0.8 10.1 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain Fer4_18 PF13746.1 gi|147919957|ref|YP_686289.1| - 0.083 13.3 1.4 0.083 13.3 1.0 3.7 4 1 1 5 5 5 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147919957|ref|YP_686289.1| - 0.25 11.6 21.5 0.28 11.4 2.8 3.9 3 1 2 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147919957|ref|YP_686289.1| - 8.7 6.8 15.2 4.4 7.7 1.3 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|147919957|ref|YP_686289.1| - 9.4 6.8 24.4 0.14 12.5 1.5 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain FAD-oxidase_C PF02913.14 gi|147919958|ref|YP_686288.1| - 4.4e-58 196.5 0.1 5.7e-58 196.1 0.1 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|147919958|ref|YP_686288.1| - 6.8e-47 158.4 0.3 2.2e-46 156.8 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain HisKA_2 PF07568.7 gi|147919959|ref|YP_686287.1| - 2e-30 104.4 3.7 2e-30 104.4 2.6 2.6 3 0 0 3 3 3 1 Histidine kinase PAS_9 PF13426.1 gi|147919959|ref|YP_686287.1| - 1.6e-21 76.5 0.2 1.8e-09 37.9 0.1 3.2 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.5 gi|147919959|ref|YP_686287.1| - 2.4e-21 75.8 0.1 1e-12 48.0 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|147919959|ref|YP_686287.1| - 2e-18 66.1 0.1 2.8e-08 33.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|147919959|ref|YP_686287.1| - 1.9e-12 46.9 0.3 5.2e-12 45.4 0.2 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|147919959|ref|YP_686287.1| - 1.6e-11 44.1 0.4 9.9e-10 38.3 0.1 2.6 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|147919959|ref|YP_686287.1| - 2.4e-11 43.0 0.1 0.00049 19.8 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|147919959|ref|YP_686287.1| - 3.9e-08 33.1 0.0 9.8e-08 31.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|147919959|ref|YP_686287.1| - 4.1e-06 27.1 0.4 1.2e-05 25.6 0.3 1.8 1 0 0 1 1 1 1 HWE histidine kinase ABC_sub_bind PF04392.7 gi|147919959|ref|YP_686287.1| - 1.4e-05 24.2 0.0 0.049 12.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter substrate binding protein Tn7_Tnp_TnsA_C PF08721.6 gi|147919959|ref|YP_686287.1| - 0.2 11.6 2.2 7.7 6.6 0.2 2.7 2 0 0 2 2 2 0 TnsA endonuclease C terminal Adenylsucc_synt PF00709.16 gi|147919960|ref|YP_686286.1| - 8.7e-85 284.9 1.9 1.1e-41 142.8 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase MAF_flag10 PF01973.13 gi|147919960|ref|YP_686286.1| - 0.16 11.4 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF115 Trm112p PF03966.11 gi|147919961|ref|YP_686285.1| - 6.1e-13 48.9 2.0 1.2e-12 47.9 1.4 1.5 1 1 0 1 1 1 1 Trm112p-like protein Prim_Zn_Ribbon PF08273.7 gi|147919961|ref|YP_686285.1| - 0.00048 20.1 0.3 0.00061 19.8 0.2 1.2 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Elf1 PF05129.8 gi|147919961|ref|YP_686285.1| - 0.002 17.7 0.1 0.002 17.7 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|147919961|ref|YP_686285.1| - 0.0038 17.5 0.6 0.0045 17.2 0.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Cys_rich_KTR PF14205.1 gi|147919961|ref|YP_686285.1| - 0.0077 15.6 0.4 0.011 15.1 0.3 1.3 1 0 0 1 1 1 1 Cysteine-rich KTR RRN7 PF11781.3 gi|147919961|ref|YP_686285.1| - 0.0099 15.3 4.4 0.24 10.9 3.0 2.2 1 1 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|147919961|ref|YP_686285.1| - 0.045 13.2 3.5 1.4 8.4 2.4 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|147919961|ref|YP_686285.1| - 0.048 13.4 0.6 0.063 13.0 0.4 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|147919961|ref|YP_686285.1| - 0.089 12.2 0.2 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif DnaJ_CXXCXGXG PF00684.14 gi|147919961|ref|YP_686285.1| - 0.099 12.7 0.7 0.12 12.4 0.5 1.1 1 0 0 1 1 1 0 DnaJ central domain DZR PF12773.2 gi|147919961|ref|YP_686285.1| - 0.2 11.5 2.5 0.56 10.0 1.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_6 PF13912.1 gi|147919961|ref|YP_686285.1| - 0.23 11.4 3.4 0.78 9.7 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|147919961|ref|YP_686285.1| - 0.35 10.6 3.0 1.4 8.7 2.1 1.8 1 1 0 1 1 1 0 zinc-ribbons LIM PF00412.17 gi|147919961|ref|YP_686285.1| - 0.43 10.6 2.6 0.73 9.9 1.8 1.4 1 1 0 1 1 1 0 LIM domain CTP_synth_N PF06418.9 gi|147919963|ref|YP_686283.1| - 2e-129 430.5 0.7 3.1e-129 429.9 0.5 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|147919963|ref|YP_686283.1| - 1.9e-51 174.2 0.0 3.4e-51 173.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|147919963|ref|YP_686283.1| - 8.1e-09 35.2 0.1 2e-07 30.6 0.0 2.5 1 1 1 2 2 2 1 Peptidase C26 CbiA PF01656.18 gi|147919963|ref|YP_686283.1| - 1.2e-08 34.5 0.3 6.2e-08 32.2 0.2 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF128 PF01995.11 gi|147919964|ref|YP_686282.1| - 6.1e-87 290.4 0.7 7.4e-87 290.1 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF128 HTH_12 PF08461.5 gi|147919964|ref|YP_686282.1| - 1.8e-26 91.6 4.2 3.6e-26 90.6 2.1 2.2 3 0 0 3 3 3 1 Ribonuclease R winged-helix domain HTH_21 PF13276.1 gi|147919964|ref|YP_686282.1| - 0.015 15.2 0.4 0.038 14.0 0.3 1.7 1 0 0 1 1 1 0 HTH-like domain HTH_IclR PF09339.5 gi|147919964|ref|YP_686282.1| - 0.22 11.1 0.9 0.48 10.0 0.1 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF2124 PF09897.4 gi|147919965|ref|YP_686281.1| - 1.6e-50 170.5 0.1 1.9e-50 170.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) BPL_N PF09825.4 gi|147919965|ref|YP_686281.1| - 0.1 11.3 0.1 0.13 10.9 0.1 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal CarboxypepD_reg PF13620.1 gi|147919966|ref|YP_686280.1| - 2.1e-08 34.0 1.4 4.3e-07 29.9 0.1 2.9 3 0 0 3 3 3 1 Carboxypeptidase regulatory-like domain NPCBM_assoc PF10633.4 gi|147919966|ref|YP_686280.1| - 5e-08 32.8 2.3 3.5e-05 23.7 0.0 4.1 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF4480 PF13715.1 gi|147919966|ref|YP_686280.1| - 0.0003 20.7 0.0 0.0013 18.7 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) DUF2846 PF11008.3 gi|147919966|ref|YP_686280.1| - 0.00039 20.2 0.0 0.75 9.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF2846) AfaD PF05775.7 gi|147919966|ref|YP_686280.1| - 0.0059 16.5 0.0 2.7 7.9 0.0 2.4 2 0 0 2 2 2 2 Enterobacteria AfaD invasin protein PEGA PF08308.6 gi|147919966|ref|YP_686280.1| - 0.037 13.8 0.0 0.72 9.6 0.0 2.9 3 0 0 3 3 3 0 PEGA domain REJ PF02010.10 gi|147919966|ref|YP_686280.1| - 0.17 10.2 0.0 0.25 9.6 0.0 1.3 1 0 0 1 1 1 0 REJ domain TIG PF01833.19 gi|147919966|ref|YP_686280.1| - 1.1 9.2 6.8 2.3 8.2 0.5 4.0 4 2 0 4 4 4 0 IPT/TIG domain CBS PF00571.23 gi|147919967|ref|YP_686279.1| - 6.3e-21 73.9 0.6 1e-13 50.8 0.0 2.5 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|147919967|ref|YP_686279.1| - 1.1e-12 47.6 0.5 2.9e-12 46.2 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|147919967|ref|YP_686279.1| - 9.6e-11 41.7 0.1 3.7e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|147919967|ref|YP_686279.1| - 1.6e-09 37.6 0.1 3.6e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|147919967|ref|YP_686279.1| - 0.00011 21.9 0.3 0.0003 20.5 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|147919967|ref|YP_686279.1| - 0.00014 21.4 0.1 0.0005 19.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|147919967|ref|YP_686279.1| - 0.00059 19.9 0.1 0.0051 16.9 0.1 2.5 3 0 0 3 3 3 1 Cro/C1-type HTH DNA-binding domain Pou PF00157.12 gi|147919967|ref|YP_686279.1| - 0.0075 15.8 0.1 0.057 13.0 0.0 2.3 1 1 1 2 2 2 1 Pou domain - N-terminal to homeobox domain HTH_24 PF13412.1 gi|147919967|ref|YP_686279.1| - 0.1 12.0 0.3 0.5 9.7 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Histone PF00125.19 gi|147919969|ref|YP_686277.1| - 3e-16 59.2 0.1 3.3e-16 59.1 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CBFD_NFYB_HMF PF00808.18 gi|147919969|ref|YP_686277.1| - 6.3e-16 58.1 0.1 6.9e-16 58.0 0.1 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Bromo_TP PF07524.8 gi|147919969|ref|YP_686277.1| - 1.4e-09 37.5 0.0 1.5e-09 37.4 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T PF15511.1 gi|147919969|ref|YP_686277.1| - 1.4e-06 27.8 0.0 1.5e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T TFIID-31kDa PF02291.10 gi|147919969|ref|YP_686277.1| - 6.7e-06 25.9 0.0 7.4e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit CENP-S PF15630.1 gi|147919969|ref|YP_686277.1| - 1.8e-05 24.8 0.0 2e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|147919969|ref|YP_686277.1| - 7.1e-05 23.0 0.0 7.3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TAF PF02969.12 gi|147919969|ref|YP_686277.1| - 0.0055 16.6 0.1 0.0061 16.4 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.11 gi|147919969|ref|YP_686277.1| - 0.039 13.7 0.0 0.048 13.4 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit AsnC_trans_reg PF01037.16 gi|147919970|ref|YP_686276.1| - 4.8e-16 58.2 0.1 8.5e-16 57.4 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|147919970|ref|YP_686276.1| - 2.3e-09 36.4 0.1 4.2e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|147919970|ref|YP_686276.1| - 1e-06 28.1 0.0 3.7e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|147919970|ref|YP_686276.1| - 0.00021 20.8 0.0 0.00037 20.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|147919970|ref|YP_686276.1| - 0.00049 19.7 0.0 0.00087 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family RPA_C PF08784.6 gi|147919970|ref|YP_686276.1| - 0.0013 19.0 0.0 0.23 11.9 0.0 2.2 2 0 0 2 2 2 1 Replication protein A C terminal HTH_20 PF12840.2 gi|147919970|ref|YP_686276.1| - 0.0014 18.3 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|147919970|ref|YP_686276.1| - 0.0019 17.8 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|147919970|ref|YP_686276.1| - 0.0046 16.7 0.0 0.0098 15.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|147919970|ref|YP_686276.1| - 0.0064 16.3 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF440 PF04269.7 gi|147919970|ref|YP_686276.1| - 0.017 15.1 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF440 TrmB PF01978.14 gi|147919970|ref|YP_686276.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|147919970|ref|YP_686276.1| - 0.035 13.8 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator TFIIE_alpha PF02002.12 gi|147919970|ref|YP_686276.1| - 0.038 13.4 0.1 0.065 12.7 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Tnp_ISL3 PF13542.1 gi|147919970|ref|YP_686276.1| - 0.041 13.0 0.0 16 4.8 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 ADP_PFK_GK PF04587.10 gi|147919970|ref|YP_686276.1| - 0.046 11.9 0.1 0.49 8.5 0.0 1.9 1 1 1 2 2 2 0 ADP-specific Phosphofructokinase/Glucokinase conserved region RNA_pol_Rpc34 PF05158.7 gi|147919970|ref|YP_686276.1| - 0.057 12.6 0.0 0.087 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_29 PF13551.1 gi|147919970|ref|YP_686276.1| - 0.092 12.9 0.0 0.19 11.8 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix OspE PF02471.12 gi|147919970|ref|YP_686276.1| - 0.1 12.5 0.2 0.5 10.2 0.0 2.0 2 1 1 3 3 3 0 Borrelia outer surface protein E Aminotran_1_2 PF00155.16 gi|147919971|ref|YP_686275.1| - 3.3e-73 246.7 0.0 3.7e-73 246.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|147919971|ref|YP_686275.1| - 1.8e-09 37.0 0.3 3.3e-09 36.2 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|147919971|ref|YP_686275.1| - 5.4e-09 35.2 0.0 9.4e-09 34.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|147919971|ref|YP_686275.1| - 1.5e-05 24.3 0.0 2.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.15 gi|147919971|ref|YP_686275.1| - 0.00087 17.9 0.1 0.0018 16.8 0.0 1.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.15 gi|147919971|ref|YP_686275.1| - 0.0067 14.7 0.1 0.012 13.9 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.16 gi|147919971|ref|YP_686275.1| - 0.087 11.6 0.1 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Peptidase_M7 PF02031.11 gi|147919972|ref|YP_686274.1| - 0.074 12.7 0.4 0.095 12.4 0.3 1.4 1 1 0 1 1 1 0 Streptomyces extracellular neutral proteinase (M7) family SHMT PF00464.14 gi|147919973|ref|YP_686273.1| - 1.3e-80 270.7 0.0 1.5e-80 270.4 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase SelA PF03841.8 gi|147919973|ref|YP_686273.1| - 1.3e-07 30.6 0.0 2.2e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_1_2 PF00155.16 gi|147919973|ref|YP_686273.1| - 1.6e-07 30.6 0.0 5.5e-07 28.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147919973|ref|YP_686273.1| - 4.5e-06 26.0 0.0 6.8e-06 25.4 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|147919973|ref|YP_686273.1| - 0.0019 16.9 0.1 0.0026 16.5 0.1 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|147919973|ref|YP_686273.1| - 0.048 11.9 0.6 15 3.7 0.1 3.0 3 0 0 3 3 3 0 Methionine gamma-lyase Shufflon_N PF04917.7 gi|147919973|ref|YP_686273.1| - 0.088 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial shufflon protein, N-terminal constant region HAD PF12710.2 gi|147919974|ref|YP_686272.1| - 1e-16 61.7 0.0 1.4e-16 61.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|147919974|ref|YP_686272.1| - 5.6e-13 49.7 0.0 3e-11 44.1 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|147919974|ref|YP_686272.1| - 3.6e-09 36.5 0.1 2.6e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|147919974|ref|YP_686272.1| - 4.3e-07 30.3 0.0 1.1e-06 29.0 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|147919974|ref|YP_686272.1| - 2.7e-06 26.7 0.0 0.041 13.0 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase DUF3418 PF11898.3 gi|147919974|ref|YP_686272.1| - 0.036 12.4 0.0 0.055 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3418) Myosin_tail_1 PF01576.14 gi|147919975|ref|YP_686271.1| - 0.12 10.0 51.1 0.17 9.5 35.2 1.3 1 1 0 1 1 1 0 Myosin tail MscS_porin PF12795.2 gi|147919975|ref|YP_686271.1| - 0.32 10.2 34.0 0.36 10.1 5.9 3.9 1 1 2 4 4 4 0 Mechanosensitive ion channel porin domain OmpH PF03938.9 gi|147919975|ref|YP_686271.1| - 1.4 8.7 53.7 0.041 13.8 9.1 3.3 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) TBPIP PF07106.8 gi|147919975|ref|YP_686271.1| - 1.6 8.2 42.2 1.3 8.5 8.5 3.2 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HAUS6_N PF14661.1 gi|147919975|ref|YP_686271.1| - 2.1 7.6 36.9 0.23 10.7 7.8 3.0 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 6 N-terminus DUF4342 PF14242.1 gi|147919975|ref|YP_686271.1| - 3.8 7.3 6.9 0.39 10.5 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) DivIVA PF05103.8 gi|147919975|ref|YP_686271.1| - 6.9 6.7 44.1 59 3.7 14.2 3.9 1 1 1 2 2 2 0 DivIVA protein Laminin_II PF06009.7 gi|147919975|ref|YP_686271.1| - 9.3 6.0 28.1 4 7.1 6.2 4.1 1 1 3 4 4 4 0 Laminin Domain II DUF373 PF04123.8 gi|147919976|ref|YP_686270.1| - 6.3e-123 410.1 10.7 7.3e-123 409.9 7.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Phage_holin_6 PF10746.4 gi|147919976|ref|YP_686270.1| - 0.097 12.4 1.5 0.39 10.4 0.6 2.4 2 0 0 2 2 2 0 Phage holin family 6 DUF2231 PF09990.4 gi|147919976|ref|YP_686270.1| - 0.7 10.2 14.6 0.29 11.5 6.4 2.4 2 1 1 3 3 3 0 Predicted membrane protein (DUF2231) DUF3278 PF11683.3 gi|147919976|ref|YP_686270.1| - 2.9 7.8 6.8 0.7 9.8 0.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3278) DDE_Tnp_1 PF01609.16 gi|147919977|ref|YP_686269.1| - 0.063 12.8 0.1 0.067 12.7 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain Pribosyltran PF00156.22 gi|147919979|ref|YP_686267.1| - 8.1e-26 90.1 0.1 1.5e-25 89.3 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|147919979|ref|YP_686267.1| - 0.00027 20.2 0.1 0.00046 19.4 0.0 1.4 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|147919979|ref|YP_686267.1| - 0.0034 16.7 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase ABC_tran PF00005.22 gi|147919980|ref|YP_686266.1| - 3.3e-25 88.9 0.0 6.2e-25 88.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147919980|ref|YP_686266.1| - 9.5e-14 52.0 0.0 1.4e-11 44.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|147919980|ref|YP_686266.1| - 0.00018 21.9 0.1 0.0003 21.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|147919980|ref|YP_686266.1| - 0.00088 18.7 0.1 1.1 8.6 0.0 2.3 1 1 0 2 2 2 2 AAA-like domain SRP54 PF00448.17 gi|147919980|ref|YP_686266.1| - 0.0081 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain BCA_ABC_TP_C PF12399.3 gi|147919980|ref|YP_686266.1| - 0.011 15.3 0.0 0.03 14.0 0.0 1.8 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|147919980|ref|YP_686266.1| - 0.045 14.0 0.5 0.1 12.9 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|147919980|ref|YP_686266.1| - 0.065 13.1 0.0 1.1 9.1 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|147919980|ref|YP_686266.1| - 0.17 11.4 0.8 0.31 10.5 0.5 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_2 PF12679.2 gi|147919981|ref|YP_686265.1| - 3.6e-50 170.3 9.7 4.1e-50 170.1 6.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147919981|ref|YP_686265.1| - 8.8e-23 80.6 6.5 8.8e-23 80.6 4.5 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147919981|ref|YP_686265.1| - 2.1e-10 40.2 15.7 2.1e-10 40.2 10.9 2.6 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147919981|ref|YP_686265.1| - 6.5e-10 38.5 16.9 6.5e-10 38.5 11.7 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|147919981|ref|YP_686265.1| - 1.1e-06 28.0 20.2 1.1e-06 28.0 14.0 3.0 3 1 0 3 3 3 1 ABC-2 type transporter DUF1109 PF06532.6 gi|147919981|ref|YP_686265.1| - 0.06 12.7 9.2 0.16 11.3 5.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1109) Bap31 PF05529.7 gi|147919981|ref|YP_686265.1| - 0.43 10.0 0.0 0.43 10.0 0.0 2.7 2 1 0 2 2 2 0 B-cell receptor-associated protein 31-like NPCBM_assoc PF10633.4 gi|147919982|ref|YP_686264.1| - 6.9e-24 83.7 13.5 2e-19 69.4 1.4 3.9 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.3 gi|147919982|ref|YP_686264.1| - 2.9e-08 33.8 6.5 0.049 13.7 0.3 3.8 2 1 2 4 4 4 3 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1034 PF06280.7 gi|147919982|ref|YP_686264.1| - 3.6e-06 27.3 10.8 0.03 14.7 1.1 4.8 3 1 0 4 4 4 3 Fn3-like domain (DUF1034) DUF4625 PF15418.1 gi|147919982|ref|YP_686264.1| - 6.2e-05 23.1 0.1 0.25 11.4 0.0 3.1 3 1 0 3 3 3 2 Domain of unknown function (DUF4625) Alpha_adaptinC2 PF02883.15 gi|147919982|ref|YP_686264.1| - 0.00063 20.0 0.3 0.026 14.8 0.1 3.2 1 1 0 2 2 2 1 Adaptin C-terminal domain CARDB PF07705.6 gi|147919982|ref|YP_686264.1| - 0.00094 19.1 1.5 0.00094 19.1 1.1 4.8 3 2 1 4 4 4 1 CARDB Transglut_N PF00868.15 gi|147919982|ref|YP_686264.1| - 0.0016 18.4 1.2 4.4 7.3 0.0 3.7 2 1 2 4 4 4 2 Transglutaminase family DUF11 PF01345.13 gi|147919982|ref|YP_686264.1| - 0.0024 17.9 15.7 0.0029 17.6 0.6 4.3 3 1 1 4 4 4 1 Domain of unknown function DUF11 Inhibitor_I42 PF09394.5 gi|147919982|ref|YP_686264.1| - 0.093 13.0 1.7 0.46 10.8 0.1 2.8 2 0 0 2 2 2 0 Chagasin family peptidase inhibitor I42 SKG6 PF08693.5 gi|147919982|ref|YP_686264.1| - 0.17 11.2 2.4 0.54 9.6 1.7 1.8 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Cna_B PF05738.8 gi|147919982|ref|YP_686264.1| - 2.5 7.9 9.1 4.8 7.0 0.5 4.0 4 0 0 4 4 4 0 Cna protein B-type domain DUF2393 PF09624.5 gi|147919982|ref|YP_686264.1| - 3.2 7.2 11.5 13 5.2 0.4 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF2393) Neisseria_TspB PF05616.8 gi|147919983|ref|YP_686263.1| - 0.65 8.2 18.4 1.7 6.8 12.3 1.8 2 0 0 2 2 2 0 Neisseria meningitidis TspB protein DUF454 PF04304.8 gi|147919984|ref|YP_686262.1| - 4.9e-23 80.9 2.3 4.9e-23 80.9 1.6 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF454) Fasciclin PF02469.17 gi|147919985|ref|YP_686261.1| - 5.1e-30 104.1 0.0 6.2e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DUF4010 PF13194.1 gi|147919986|ref|YP_686260.1| - 5.1e-62 208.9 25.4 5.1e-62 208.9 17.6 3.0 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) HisKA_2 PF07568.7 gi|147919988|ref|YP_686258.1| - 6.6e-30 102.7 4.4 1.3e-29 101.8 1.5 2.4 2 0 0 2 2 2 1 Histidine kinase PAS PF00989.19 gi|147919988|ref|YP_686258.1| - 4.4e-27 94.1 0.1 2.3e-16 59.5 0.0 4.0 3 1 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|147919988|ref|YP_686258.1| - 2.3e-26 92.1 0.1 3.1e-17 62.8 0.0 3.5 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|147919988|ref|YP_686258.1| - 7.9e-21 74.1 0.0 1.7e-12 47.3 0.0 3.2 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|147919988|ref|YP_686258.1| - 6.1e-16 57.6 0.0 2.2e-06 27.3 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|147919988|ref|YP_686258.1| - 3.2e-11 42.9 0.4 1.1e-10 41.2 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|147919988|ref|YP_686258.1| - 7.4e-10 38.8 0.0 3.4e-09 36.6 0.0 2.1 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.2 gi|147919988|ref|YP_686258.1| - 8.9e-10 38.5 0.1 0.0051 16.8 0.0 4.0 2 2 0 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|147919988|ref|YP_686258.1| - 1.7e-07 31.4 0.0 0.00042 20.5 0.0 3.2 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|147919988|ref|YP_686258.1| - 7e-07 29.0 0.0 1.5e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|147919988|ref|YP_686258.1| - 1e-06 29.0 0.2 2.2e-06 28.0 0.2 1.6 1 0 0 1 1 1 1 HWE histidine kinase DUF1801 PF08818.6 gi|147919989|ref|YP_686257.1| - 5.9e-23 80.9 0.1 7.3e-23 80.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) Herpes_UL36 PF03586.8 gi|147919989|ref|YP_686257.1| - 0.0069 15.5 0.0 0.0069 15.5 0.0 1.1 1 0 0 1 1 1 1 Herpesvirus UL36 tegument protein DUF3649 PF12365.3 gi|147919990|ref|YP_686256.1| - 0.019 14.4 0.2 0.034 13.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3649) CarboxypepD_reg PF13620.1 gi|147919991|ref|YP_686255.1| - 0.0046 16.9 0.4 0.007 16.3 0.2 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Neisseria_TspB PF05616.8 gi|147919991|ref|YP_686255.1| - 0.39 9.0 9.0 0.53 8.5 6.2 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein GDE_N_bis PF14742.1 gi|147919992|ref|YP_686254.1| - 5.1e-55 185.8 0.0 7.3e-55 185.3 0.0 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|147919992|ref|YP_686254.1| - 6.2e-16 58.0 0.1 2e-15 56.4 0.1 1.8 1 1 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid PF05592.6 gi|147919992|ref|YP_686254.1| - 0.00067 17.9 0.2 0.0012 17.1 0.2 1.4 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase TPR_12 PF13424.1 gi|147919992|ref|YP_686254.1| - 0.016 15.1 0.2 0.042 13.7 0.1 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Glyco_hydro_63 PF03200.11 gi|147919992|ref|YP_686254.1| - 0.055 11.3 1.4 0.99 7.1 0.1 2.3 1 1 0 2 2 2 0 Mannosyl oligosaccharide glucosidase Rhomboid PF01694.17 gi|147919993|ref|YP_686253.1| - 3.8e-28 98.3 19.8 3.8e-28 98.3 13.8 1.4 1 1 0 1 1 1 1 Rhomboid family zf-AN1 PF01428.11 gi|147919993|ref|YP_686253.1| - 4.8e-14 51.9 6.3 6.7e-14 51.4 4.4 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|147919993|ref|YP_686253.1| - 0.0058 16.9 1.9 0.0084 16.4 0.4 2.0 1 1 1 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) zf-C2HC5 PF06221.8 gi|147919993|ref|YP_686253.1| - 4.1 7.2 6.4 8.7 6.1 4.5 1.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF2148 PF09918.4 gi|147919994|ref|YP_686252.1| - 1.5e-21 75.8 0.7 2.9e-21 74.9 0.5 1.5 1 0 0 1 1 1 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) Na_Pi_cotrans PF02690.10 gi|147919995|ref|YP_686250.1| - 3.9e-61 204.9 35.3 3.2e-39 133.9 8.0 3.2 1 1 2 3 3 3 2 Na+/Pi-cotransporter PhoU PF01895.14 gi|147919995|ref|YP_686250.1| - 6.6e-05 23.2 0.4 6.6e-05 23.2 0.3 2.3 2 1 0 2 2 2 1 PhoU domain PhoU_div PF01865.11 gi|147919995|ref|YP_686250.1| - 0.0015 17.7 0.5 0.0027 16.8 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF47 Gly-zipper_Omp PF13488.1 gi|147919995|ref|YP_686250.1| - 0.28 10.8 8.6 0.37 10.4 0.0 3.1 3 0 0 3 3 3 0 Glycine zipper Abi PF02517.11 gi|147919996|ref|YP_686249.1| - 1.3e-13 50.9 10.5 1.3e-13 50.9 7.3 2.7 1 1 1 2 2 2 1 CAAX protease self-immunity Abhydrolase_6 PF12697.2 gi|147919997|ref|YP_686248.1| - 3.2e-16 59.8 1.6 1.4e-15 57.8 0.0 2.2 2 1 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|147919997|ref|YP_686248.1| - 1.6e-10 40.8 0.0 1.8e-08 34.2 0.0 2.8 2 1 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|147919997|ref|YP_686248.1| - 8.3e-07 28.4 2.2 1.2e-06 27.9 0.0 2.3 3 0 0 3 3 3 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|147919997|ref|YP_686248.1| - 3.1e-05 23.6 0.1 0.0001 21.9 0.0 1.9 2 0 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|147919997|ref|YP_686248.1| - 0.038 13.8 0.0 0.092 12.6 0.0 1.7 1 0 0 1 1 1 0 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|147919997|ref|YP_686248.1| - 0.056 12.8 0.1 8.9 5.6 0.0 2.2 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) UPF0233 PF06781.7 gi|147919997|ref|YP_686248.1| - 0.16 11.6 2.5 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) Flavodoxin_3 PF12641.2 gi|147919998|ref|YP_686247.1| - 3.7e-10 39.4 0.0 6.7e-10 38.6 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_5 PF12724.2 gi|147919998|ref|YP_686247.1| - 2.3e-08 34.1 0.0 3.1e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Prismane PF03063.15 gi|147919999|ref|YP_686246.1| - 9.7e-170 565.3 0.0 1.1e-169 565.1 0.0 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family DUF1364 PF07102.7 gi|147919999|ref|YP_686246.1| - 0.11 12.3 0.1 0.27 11.1 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1364) V4R PF02830.13 gi|147920000|ref|YP_686245.1| - 7.6e-15 54.5 2.0 1.2e-14 53.8 1.4 1.3 1 0 0 1 1 1 1 V4R domain HTH_5 PF01022.15 gi|147920000|ref|YP_686245.1| - 7.7e-09 35.0 0.1 1.5e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|147920000|ref|YP_686245.1| - 2.3e-06 27.1 0.0 4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|147920000|ref|YP_686245.1| - 1.9e-05 24.3 0.0 6.5e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|147920000|ref|YP_686245.1| - 0.0003 20.4 0.1 0.00056 19.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|147920000|ref|YP_686245.1| - 0.00047 19.4 0.1 0.0012 18.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|147920000|ref|YP_686245.1| - 0.0047 16.8 0.0 0.0087 16.0 0.0 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_27 PF13463.1 gi|147920000|ref|YP_686245.1| - 0.032 14.5 0.0 0.081 13.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.8 gi|147920000|ref|YP_686245.1| - 0.033 13.6 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_IclR PF09339.5 gi|147920000|ref|YP_686245.1| - 0.041 13.4 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain CHB_HEX_C_1 PF13290.1 gi|147920001|ref|YP_686244.1| - 4.6e-16 58.3 26.4 6.6e-07 29.0 2.0 5.8 6 1 0 6 6 6 3 Chitobiase/beta-hexosaminidase C-terminal domain FlgD_ig PF13860.1 gi|147920001|ref|YP_686244.1| - 1.1e-15 57.1 1.5 2.9e-11 42.9 0.1 5.2 5 0 0 5 5 5 1 FlgD Ig-like domain Big_3_4 PF13754.1 gi|147920001|ref|YP_686244.1| - 7.3e-15 55.0 58.7 1.2e-05 25.4 0.9 9.9 9 2 0 9 9 9 5 Bacterial Ig-like domain (group 3) NHL PF01436.16 gi|147920001|ref|YP_686244.1| - 3.8e-13 48.6 3.8 3.8e-07 29.7 0.0 5.8 5 0 0 5 5 5 2 NHL repeat F5_F8_type_C PF00754.20 gi|147920001|ref|YP_686244.1| - 2.3e-06 27.4 1.7 0.81 9.5 0.1 4.0 3 0 0 3 3 3 3 F5/8 type C domain SBBP PF06739.6 gi|147920001|ref|YP_686244.1| - 0.0016 18.1 1.3 0.0016 18.1 0.9 6.3 6 0 0 6 6 6 1 Beta-propeller repeat HYR PF02494.11 gi|147920001|ref|YP_686244.1| - 4.5 7.3 27.4 14 5.7 0.0 7.9 7 2 1 8 8 8 0 HYR domain Flavodoxin_1 PF00258.20 gi|147920002|ref|YP_686243.1| - 7.4e-09 35.7 0.0 1.1e-08 35.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|147920002|ref|YP_686243.1| - 2.7e-07 30.6 0.0 3.2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|147920002|ref|YP_686243.1| - 6.5e-05 22.4 0.0 7.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|147920002|ref|YP_686243.1| - 0.0068 15.9 0.0 0.25 10.8 0.0 2.1 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavin_Reduct PF01613.13 gi|147920003|ref|YP_001218858.1| - 2.2e-24 86.0 0.1 2.6e-24 85.8 0.1 1.0 1 0 0 1 1 1 1 Flavin reductase like domain tRNA-Thr_ED PF08915.6 gi|147920005|ref|YP_686240.1| - 1.4e-55 186.9 0.1 3e-55 185.9 0.1 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|147920005|ref|YP_686240.1| - 8.7e-24 84.0 0.9 1.4e-23 83.3 0.6 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|147920005|ref|YP_686240.1| - 6.8e-17 61.2 1.5 1.4e-16 60.2 0.7 1.8 2 0 0 2 2 2 1 Anticodon binding domain AMP-binding PF00501.23 gi|147920006|ref|YP_686239.1| - 1.2e-101 340.1 0.0 1.4e-101 339.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|147920006|ref|YP_686239.1| - 1e-17 64.8 0.0 2.2e-17 63.7 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Methyltransf_23 PF13489.1 gi|147920007|ref|YP_686238.1| - 6e-16 58.5 0.0 9.4e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920007|ref|YP_686238.1| - 3e-14 53.5 0.2 5.5e-14 52.7 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920007|ref|YP_686238.1| - 2.2e-09 37.0 0.0 3e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147920007|ref|YP_686238.1| - 2.8e-08 34.1 0.0 6.5e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920007|ref|YP_686238.1| - 5.9e-08 33.0 0.1 1.1e-07 32.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920007|ref|YP_686238.1| - 1.4e-06 28.6 0.0 2.7e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147920007|ref|YP_686238.1| - 4.4e-06 26.7 0.0 1.2e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920007|ref|YP_686238.1| - 4.1e-05 22.8 0.0 5.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.13 gi|147920007|ref|YP_686238.1| - 0.0012 18.4 0.0 0.0027 17.3 0.0 1.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|147920007|ref|YP_686238.1| - 0.002 17.5 0.0 0.0034 16.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|147920007|ref|YP_686238.1| - 0.036 13.1 0.0 0.055 12.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|147920007|ref|YP_686238.1| - 0.096 12.2 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|147920007|ref|YP_686238.1| - 0.12 11.6 0.1 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|147920007|ref|YP_686238.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase GAF_2 PF13185.1 gi|147920008|ref|YP_686235.1| - 8e-21 75.0 0.0 1.7e-20 74.0 0.0 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|147920008|ref|YP_686235.1| - 1.8e-16 59.8 0.0 3.4e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|147920008|ref|YP_686235.1| - 0.00062 19.5 0.0 0.0016 18.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.21 gi|147920008|ref|YP_686235.1| - 0.0012 18.9 0.0 0.0039 17.3 0.0 1.8 2 0 0 2 2 2 1 GAF domain DivIVA PF05103.8 gi|147920008|ref|YP_686235.1| - 0.7 9.9 5.7 0.79 9.7 1.4 2.3 2 0 0 2 2 2 0 DivIVA protein FlxA PF14282.1 gi|147920008|ref|YP_686235.1| - 2.2 8.2 8.7 2.9 7.8 0.5 2.8 2 1 0 2 2 2 0 FlxA-like protein zf-CDGSH PF09360.5 gi|147920010|ref|YP_686233.1| - 6.9e-36 121.7 1.5 3.6e-18 65.1 0.1 2.4 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.6 gi|147920010|ref|YP_686233.1| - 3.9e-13 49.0 0.0 7.6e-13 48.0 0.0 1.5 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster DZR PF12773.2 gi|147920013|ref|YP_686230.1| - 1.5e-09 37.5 22.3 6.8e-08 32.2 8.2 1.8 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|147920013|ref|YP_686230.1| - 5.8e-09 34.8 13.5 4e-06 25.8 0.7 3.0 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147920013|ref|YP_686230.1| - 6.3e-07 28.6 9.5 7.1e-05 22.1 0.9 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Big_1 PF02369.11 gi|147920013|ref|YP_686230.1| - 3.1e-05 23.8 21.1 0.0013 18.6 4.5 3.5 2 1 1 3 3 3 2 Bacterial Ig-like domain (group 1) UPF0547 PF10571.4 gi|147920013|ref|YP_686230.1| - 3.3e-05 23.4 4.4 3.3e-05 23.4 3.1 3.3 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|147920013|ref|YP_686230.1| - 0.016 14.9 13.0 0.057 13.2 0.9 3.3 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Y_Y_Y PF07495.8 gi|147920013|ref|YP_686230.1| - 0.14 11.9 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Y_Y_Y domain DUF2321 PF10083.4 gi|147920013|ref|YP_686230.1| - 0.38 10.2 3.8 0.82 9.1 2.6 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF35_N PF12172.3 gi|147920013|ref|YP_686230.1| - 1.3 9.0 13.9 6.2 6.8 0.1 3.3 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|147920013|ref|YP_686230.1| - 2.8 7.5 20.2 0.57 9.7 2.9 4.2 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|147920013|ref|YP_686230.1| - 3 7.6 11.2 1.9 8.2 4.4 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF1413 PF07205.6 gi|147920015|ref|YP_686228.1| - 0.0012 18.2 0.1 0.052 13.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1413) DUF2313 PF10076.4 gi|147920016|ref|YP_686227.1| - 0.0044 16.4 0.0 0.014 14.7 0.0 1.9 2 1 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2313) Baseplate_J PF04865.9 gi|147920017|ref|YP_686226.1| - 3.3e-19 69.2 1.0 4.5e-15 55.6 0.3 2.5 1 1 1 2 2 2 2 Baseplate J-like protein DUF2612 PF11041.3 gi|147920017|ref|YP_686226.1| - 0.0005 19.6 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2612) DUF2313 PF10076.4 gi|147920017|ref|YP_686226.1| - 0.099 12.0 0.0 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2313) GPW_gp25 PF04965.9 gi|147920018|ref|YP_686225.1| - 2e-11 43.3 0.0 2.3e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.3 gi|147920018|ref|YP_686225.1| - 4.1e-07 29.7 0.0 6.7e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) GP46 PF07409.7 gi|147920018|ref|YP_686225.1| - 0.00015 21.0 0.0 0.00024 20.4 0.0 1.3 1 0 0 1 1 1 1 Phage protein GP46 PAAR_motif PF05488.8 gi|147920019|ref|YP_686224.1| - 6.3e-12 45.3 7.2 7.4e-09 35.4 1.1 2.1 1 1 1 2 2 2 2 PAAR motif DUF4150 PF13665.1 gi|147920019|ref|YP_686224.1| - 1e-05 25.4 1.0 2.9e-05 23.9 0.3 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4150) Phage_base_V PF04717.7 gi|147920020|ref|YP_686223.1| - 2e-07 30.8 0.2 5.4e-07 29.4 0.0 2.0 2 1 0 2 2 2 1 Phage-related baseplate assembly protein DUF3540 PF12059.3 gi|147920020|ref|YP_686223.1| - 0.013 15.1 0.0 1.7 8.2 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3540) Fil_haemagg_2 PF13332.1 gi|147920020|ref|YP_686223.1| - 0.018 14.8 4.4 1 9.0 0.3 2.2 1 1 1 2 2 2 0 Haemagluttinin repeat DUF2917 PF11142.3 gi|147920020|ref|YP_686223.1| - 0.085 12.0 0.1 0.16 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) DUF4353 PF14262.1 gi|147920020|ref|YP_686223.1| - 0.39 9.8 7.7 0.85 8.7 5.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4353) CHASE3 PF05227.8 gi|147920021|ref|YP_686222.1| - 0.0045 16.6 10.2 0.0094 15.6 4.0 2.2 2 0 0 2 2 2 1 CHASE3 domain Tropomyosin_1 PF12718.2 gi|147920021|ref|YP_686222.1| - 0.14 11.9 11.3 0.14 11.9 6.7 1.8 1 1 1 2 2 2 0 Tropomyosin like PIN_4 PF13638.1 gi|147920021|ref|YP_686222.1| - 0.4 10.7 3.8 0.57 10.2 2.6 1.2 1 0 0 1 1 1 0 PIN domain Tox-REase-3 PF15647.1 gi|147920021|ref|YP_686222.1| - 1.3 8.8 6.3 2 8.2 3.9 1.8 1 1 0 1 1 1 0 Restriction endonuclease fold toxin 3 DUF3584 PF12128.3 gi|147920021|ref|YP_686222.1| - 2.2 5.5 15.2 2.4 5.4 10.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ATP11 PF06644.6 gi|147920021|ref|YP_686222.1| - 2.2 7.6 9.7 2.7 7.3 6.5 1.3 1 1 0 1 1 1 0 ATP11 protein DUF4407 PF14362.1 gi|147920021|ref|YP_686222.1| - 3.8 6.3 11.8 4.5 6.1 8.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Cache_2 PF08269.6 gi|147920021|ref|YP_686222.1| - 6.8 6.7 12.8 23 5.0 0.1 2.5 2 1 0 2 2 2 0 Cache domain Phage_GPD PF05954.6 gi|147920022|ref|YP_686221.1| - 2.4e-12 46.6 1.4 9.3e-11 41.4 0.0 2.4 2 0 0 2 2 2 1 Phage late control gene D protein (GPD) DivIVA PF05103.8 gi|147920022|ref|YP_686221.1| - 0.00052 20.0 16.6 0.00052 20.0 11.5 2.8 1 1 1 2 2 2 1 DivIVA protein ApoO PF09769.4 gi|147920022|ref|YP_686221.1| - 0.0086 15.7 6.2 0.79 9.4 0.5 3.1 1 1 2 3 3 3 2 Apolipoprotein O ISG65-75 PF11727.3 gi|147920022|ref|YP_686221.1| - 0.085 11.9 33.3 0.089 11.8 11.9 2.9 1 1 2 3 3 3 0 Invariant surface glycoprotein LXG PF04740.7 gi|147920022|ref|YP_686221.1| - 0.25 11.1 21.6 1.1 8.9 2.0 3.0 1 1 1 3 3 3 0 LXG domain of WXG superfamily Baculo_PEP_C PF04513.7 gi|147920022|ref|YP_686221.1| - 0.28 10.9 4.6 5 6.9 0.4 2.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus TBPIP PF07106.8 gi|147920022|ref|YP_686221.1| - 0.33 10.4 21.1 1.3 8.6 9.0 2.6 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) V_ATPase_I PF01496.14 gi|147920022|ref|YP_686221.1| - 0.8 7.4 12.0 1.2 6.8 8.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF883 PF05957.8 gi|147920022|ref|YP_686221.1| - 2.2 8.7 36.7 0.36 11.2 6.8 4.8 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) AAA_13 PF13166.1 gi|147920022|ref|YP_686221.1| - 2.3 6.5 26.9 35 2.6 18.6 2.0 1 1 0 1 1 1 0 AAA domain AATF-Che1 PF13339.1 gi|147920022|ref|YP_686221.1| - 2.8 8.0 21.5 1.2 9.3 2.7 3.0 2 1 0 2 2 2 0 Apoptosis antagonizing transcription factor Filament PF00038.16 gi|147920022|ref|YP_686221.1| - 3.5 6.9 33.9 9.4 5.5 11.0 2.1 1 1 1 2 2 2 0 Intermediate filament protein CorA PF01544.13 gi|147920022|ref|YP_686221.1| - 4.2 6.3 15.3 0.23 10.4 2.0 2.2 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF3584 PF12128.3 gi|147920022|ref|YP_686221.1| - 4.2 4.5 37.6 1.2 6.3 13.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) V-SNARE PF05008.10 gi|147920022|ref|YP_686221.1| - 4.2 7.5 31.1 0.031 14.4 6.9 4.0 2 2 1 4 4 4 0 Vesicle transport v-SNARE protein N-terminus Prominin PF05478.6 gi|147920022|ref|YP_686221.1| - 5.5 4.3 12.3 10 3.5 8.5 1.4 1 1 0 1 1 1 0 Prominin Tape_meas_lam_C PF09718.5 gi|147920022|ref|YP_686221.1| - 6 6.8 6.2 1.7 8.6 0.1 3.0 3 2 0 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) NPV_P10 PF05531.7 gi|147920022|ref|YP_686221.1| - 6.3 7.1 5.7 41 4.5 0.1 3.4 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein CarboxypepD_reg PF13620.1 gi|147920023|ref|YP_686220.1| - 1.9e-14 53.4 1.8 2.9e-14 52.8 0.5 1.8 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920023|ref|YP_686220.1| - 8.5e-09 35.3 0.0 1.8e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147920023|ref|YP_686220.1| - 2.1e-05 24.2 0.4 4.8e-05 23.0 0.3 1.7 1 0 0 1 1 1 1 Cna protein B-type domain Big_1 PF02369.11 gi|147920023|ref|YP_686220.1| - 8.6e-05 22.3 0.1 0.00027 20.8 0.1 1.8 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) PEGA PF08308.6 gi|147920023|ref|YP_686220.1| - 0.00026 20.6 0.3 0.00094 18.9 0.1 2.0 2 0 0 2 2 2 1 PEGA domain Dioxygenase_C PF00775.16 gi|147920023|ref|YP_686220.1| - 0.0023 17.2 0.8 0.47 9.6 0.1 2.4 1 1 1 2 2 2 2 Dioxygenase fn3_3 PF14686.1 gi|147920023|ref|YP_686220.1| - 0.0038 17.3 0.1 0.01 15.9 0.1 1.8 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II phage_tail_N PF08400.5 gi|147920023|ref|YP_686220.1| - 0.0058 16.3 2.8 0.069 12.8 1.9 2.4 1 1 0 1 1 1 1 Prophage tail fibre N-terminal DUF2012 PF09430.5 gi|147920023|ref|YP_686220.1| - 0.014 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) FlgD_ig PF13860.1 gi|147920023|ref|YP_686220.1| - 0.061 13.0 1.7 1.2 8.9 0.5 2.5 2 0 0 2 2 2 0 FlgD Ig-like domain DUF2846 PF11008.3 gi|147920023|ref|YP_686220.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2846) Flagellin_D3 PF08884.6 gi|147920023|ref|YP_686220.1| - 0.68 10.1 5.7 0.81 9.9 2.4 2.4 2 1 0 2 2 1 0 Flagellin D3 domain Phage_sheath_1 PF04984.9 gi|147920028|ref|YP_686215.1| - 9.3e-80 268.3 0.3 1e-79 268.1 0.2 1.0 1 0 0 1 1 1 1 Phage tail sheath protein SHOCT PF09851.4 gi|147920028|ref|YP_686215.1| - 0.069 12.6 0.2 0.15 11.5 0.1 1.6 1 0 0 1 1 1 0 Short C-terminal domain MCPsignal PF00015.16 gi|147920029|ref|YP_686214.1| - 5.4e-15 55.5 2.5 8.3e-15 54.9 1.8 1.2 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Diacid_rec PF05651.8 gi|147920029|ref|YP_686214.1| - 0.06 12.7 0.5 6.2 6.2 0.0 2.8 3 0 0 3 3 3 0 Putative sugar diacid recognition MCPsignal PF00015.16 gi|147920030|ref|YP_686213.1| - 5.3e-54 182.9 36.7 5.3e-54 182.9 25.5 4.4 4 1 1 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|147920030|ref|YP_686213.1| - 2.1e-33 114.7 0.1 1e-16 61.2 0.0 4.5 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.5 gi|147920030|ref|YP_686213.1| - 9.3e-28 96.4 0.0 6.5e-13 48.6 0.0 4.8 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|147920030|ref|YP_686213.1| - 5.5e-24 84.1 0.0 8.7e-14 51.2 0.0 3.3 3 0 0 3 3 3 2 PAS fold HAMP PF00672.20 gi|147920030|ref|YP_686213.1| - 1.6e-14 53.7 0.3 1.6e-14 53.7 0.2 5.1 5 1 1 6 6 6 1 HAMP domain PAS_10 PF13596.1 gi|147920030|ref|YP_686213.1| - 2.7e-13 50.0 0.1 0.00053 20.2 0.0 5.3 5 0 0 5 5 5 2 PAS domain Cache_3 PF14827.1 gi|147920030|ref|YP_686213.1| - 1.4e-07 31.4 16.0 3e-05 23.8 0.6 6.0 5 1 0 5 5 5 2 Sensory domain of two-component sensor kinase PAS_8 PF13188.1 gi|147920030|ref|YP_686213.1| - 1.9e-05 24.3 0.0 0.019 14.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|147920030|ref|YP_686213.1| - 0.00028 20.9 0.0 0.0094 16.0 0.0 2.9 2 0 0 2 2 2 1 PAS fold HTH_5 PF01022.15 gi|147920031|ref|YP_686212.1| - 2.9e-15 55.6 0.5 4.7e-15 54.9 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147920031|ref|YP_686212.1| - 6.3e-13 48.3 0.0 8.5e-13 47.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|147920031|ref|YP_686212.1| - 1.8e-06 27.6 0.0 7e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|147920031|ref|YP_686212.1| - 2.2e-05 24.3 0.0 4.7e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|147920031|ref|YP_686212.1| - 2.9e-05 24.3 0.1 6.8e-05 23.1 0.1 1.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|147920031|ref|YP_686212.1| - 0.0027 17.0 0.1 0.018 14.4 0.1 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|147920031|ref|YP_686212.1| - 0.0069 15.9 0.0 0.013 15.1 0.0 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix Penicillinase_R PF03965.11 gi|147920031|ref|YP_686212.1| - 0.014 15.5 0.3 0.45 10.6 0.0 2.1 1 1 1 2 2 2 0 Penicillinase repressor Mrr_N PF14338.1 gi|147920031|ref|YP_686212.1| - 0.031 14.3 0.1 0.14 12.2 0.0 1.9 2 1 0 2 2 2 0 Mrr N-terminal domain PadR PF03551.9 gi|147920031|ref|YP_686212.1| - 0.035 13.8 0.1 0.28 10.9 0.1 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2513 PF10711.4 gi|147920031|ref|YP_686212.1| - 0.038 14.0 0.0 0.062 13.3 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_Crp_2 PF13545.1 gi|147920031|ref|YP_686212.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Rio2_N PF09202.6 gi|147920031|ref|YP_686212.1| - 0.072 13.1 0.1 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 Rio2, N-terminal Cdc6_C PF09079.6 gi|147920031|ref|YP_686212.1| - 0.073 12.8 0.1 0.13 12.0 0.0 1.4 1 1 0 1 1 1 0 CDC6, C terminal TrmB PF01978.14 gi|147920031|ref|YP_686212.1| - 0.075 12.7 0.2 0.34 10.6 0.0 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB AraC_N PF06719.8 gi|147920031|ref|YP_686212.1| - 0.12 11.6 0.1 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus Pentaxin PF00354.12 gi|147920031|ref|YP_686212.1| - 0.13 11.6 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Pentaxin family Thioredoxin_3 PF13192.1 gi|147920032|ref|YP_686211.1| - 7.4e-27 92.9 0.3 8.1e-27 92.8 0.2 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|147920032|ref|YP_686211.1| - 0.0071 16.3 0.6 0.013 15.4 0.4 1.6 1 1 0 1 1 1 1 Glutaredoxin PTS_IIB PF02302.12 gi|147920032|ref|YP_686211.1| - 0.034 14.6 0.1 0.04 14.3 0.1 1.2 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit ArsD PF06953.6 gi|147920032|ref|YP_686211.1| - 0.039 14.1 0.0 0.058 13.5 0.0 1.3 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DUF318 PF03773.8 gi|147920033|ref|YP_686210.1| - 8.1e-82 274.6 30.0 1e-81 274.3 20.8 1.0 1 0 0 1 1 1 1 Predicted permease MDM31_MDM32 PF08118.6 gi|147920033|ref|YP_686210.1| - 0.014 13.8 0.7 0.021 13.3 0.5 1.2 1 0 0 1 1 1 0 Yeast mitochondrial distribution and morphology (MDM) proteins DsbD_2 PF13386.1 gi|147920034|ref|YP_685398.1| - 3.4e-21 75.9 14.5 3.8e-21 75.7 9.8 1.3 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region AhpC-TSA PF00578.16 gi|147920035|ref|YP_686208.1| - 0.0079 15.8 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Metallophos_2 PF12850.2 gi|147920036|ref|YP_686207.1| - 1.1e-27 96.8 0.0 1.3e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147920036|ref|YP_686207.1| - 2.9e-10 39.9 1.6 5.4e-10 38.9 1.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SBF PF01758.11 gi|147920037|ref|YP_686206.1| - 9e-59 198.0 16.8 9e-59 198.0 11.7 2.2 2 0 0 2 2 2 1 Sodium Bile acid symporter family UPF0066 PF01980.11 gi|147920038|ref|YP_686205.1| - 2.2e-34 117.9 0.0 3.3e-34 117.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 FmdE PF02663.9 gi|147920038|ref|YP_686205.1| - 2.2e-12 47.0 0.0 3.6e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF92 PF01940.11 gi|147920038|ref|YP_686205.1| - 0.032 13.3 0.0 0.043 12.9 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF92 MoeA_N PF03453.12 gi|147920039|ref|YP_686204.1| - 3.9e-31 107.5 0.4 7.2e-31 106.7 0.3 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|147920039|ref|YP_686204.1| - 2.3e-30 104.8 0.0 3.7e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain PUA PF01472.15 gi|147920039|ref|YP_686204.1| - 0.064 12.9 1.0 2.9 7.6 0.0 3.4 5 0 0 5 5 5 0 PUA domain FdhD-NarQ PF02634.10 gi|147920040|ref|YP_686203.1| - 1.1e-63 214.8 0.0 1.3e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family FdhD-NarQ PF02634.10 gi|147920041|ref|YP_686202.1| - 4.6e-41 140.8 0.6 1.6e-31 109.6 0.3 2.0 1 1 1 2 2 2 2 FdhD/NarQ family Molydop_binding PF01568.16 gi|147920042|ref|YP_686201.1| - 5.1e-11 42.3 0.0 6.2e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.17 gi|147920043|ref|YP_686200.1| - 1e-10 40.9 0.0 1.4e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|147920043|ref|YP_686200.1| - 0.0092 15.7 0.0 0.4 10.4 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|147920043|ref|YP_686200.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TFX_C PF14601.1 gi|147920044|ref|YP_686199.1| - 2.2e-28 97.8 0.2 2.2e-28 97.8 0.1 1.6 2 0 0 2 2 2 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|147920044|ref|YP_686199.1| - 3.4e-06 26.2 0.2 5.3e-06 25.6 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|147920044|ref|YP_686199.1| - 0.00011 21.7 0.2 0.00023 20.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|147920044|ref|YP_686199.1| - 0.00013 21.1 0.4 0.00022 20.4 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|147920044|ref|YP_686199.1| - 0.0029 17.1 0.0 0.0055 16.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|147920044|ref|YP_686199.1| - 0.0073 15.7 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.2 gi|147920044|ref|YP_686199.1| - 0.013 15.5 0.2 0.023 14.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|147920044|ref|YP_686199.1| - 0.02 14.7 0.2 0.038 13.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|147920044|ref|YP_686199.1| - 0.045 13.7 0.1 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FmdE PF02663.9 gi|147920045|ref|YP_686198.1| - 1.2e-28 99.5 0.0 1.6e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|147920045|ref|YP_686198.1| - 0.00083 19.0 2.4 0.00083 19.0 1.6 2.5 3 1 0 3 3 3 1 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.2 gi|147920045|ref|YP_686198.1| - 0.0012 18.6 1.0 0.0023 17.6 0.7 1.4 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|147920045|ref|YP_686198.1| - 0.0021 17.6 0.5 0.0036 16.9 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain BenE PF03594.8 gi|147920046|ref|YP_686197.1| - 6.5e-05 21.6 7.3 6.5e-05 21.6 5.0 2.4 2 1 1 3 3 3 1 Benzoate membrane transport protein DUF4491 PF14898.1 gi|147920046|ref|YP_686197.1| - 0.49 10.5 0.0 0.49 10.5 0.0 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4491) TOBE PF03459.12 gi|147920047|ref|YP_686196.1| - 4.3e-18 65.1 0.7 4.7e-18 65.0 0.5 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_3 PF12857.2 gi|147920047|ref|YP_686196.1| - 0.00029 20.6 0.1 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 TOBE-like domain PDZ PF00595.19 gi|147920047|ref|YP_686196.1| - 0.061 13.5 0.9 7.2 6.8 0.1 2.1 1 1 1 2 2 2 0 PDZ domain (Also known as DHR or GLGF) TOBE_2 PF08402.5 gi|147920047|ref|YP_686196.1| - 0.066 13.2 0.0 0.073 13.0 0.0 1.1 1 0 0 1 1 1 0 TOBE domain YlqD PF11068.3 gi|147920047|ref|YP_686196.1| - 0.12 12.4 0.3 0.22 11.5 0.1 1.5 1 1 1 2 2 2 0 YlqD protein Methyltransf_18 PF12847.2 gi|147920050|ref|YP_686193.1| - 2e-07 31.5 0.0 6.6e-07 29.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920050|ref|YP_686193.1| - 3.6e-07 29.8 0.0 5.9e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920050|ref|YP_686193.1| - 6.9e-07 29.5 0.0 1.6e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|147920050|ref|YP_686193.1| - 1.4e-05 24.2 0.0 2.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|147920050|ref|YP_686193.1| - 0.00036 20.9 0.0 0.0012 19.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920050|ref|YP_686193.1| - 0.0045 16.7 0.0 0.0076 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147920050|ref|YP_686193.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|147920050|ref|YP_686193.1| - 0.033 13.5 0.0 0.05 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|147920050|ref|YP_686193.1| - 0.035 13.2 0.0 0.058 12.4 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF938 PF06080.7 gi|147920050|ref|YP_686193.1| - 0.069 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_15 PF09445.5 gi|147920050|ref|YP_686193.1| - 0.074 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|147920050|ref|YP_686193.1| - 0.075 13.5 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FrhB_FdhB_C PF04432.8 gi|147920051|ref|YP_686192.1| - 4.7e-38 130.1 0.3 4.7e-38 130.1 0.2 2.0 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147920051|ref|YP_686192.1| - 3e-20 71.8 0.1 5.2e-20 71.0 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_8 PF13183.1 gi|147920051|ref|YP_686192.1| - 4.1e-08 33.1 13.4 4.1e-08 33.1 9.3 2.4 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920051|ref|YP_686192.1| - 3.2e-06 27.4 11.8 0.00089 19.6 1.2 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147920051|ref|YP_686192.1| - 1.3e-05 25.4 13.1 1.3e-05 25.4 9.1 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920051|ref|YP_686192.1| - 3.8e-05 23.8 18.3 4.2e-05 23.7 10.4 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147920051|ref|YP_686192.1| - 0.00029 21.1 18.2 0.00037 20.8 10.8 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147920051|ref|YP_686192.1| - 0.0011 18.7 23.6 0.0092 15.7 14.5 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147920051|ref|YP_686192.1| - 0.0012 18.3 23.0 0.0026 17.2 1.9 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|147920051|ref|YP_686192.1| - 0.0017 17.9 5.8 0.29 10.7 0.3 2.4 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|147920051|ref|YP_686192.1| - 0.0021 18.5 6.3 0.49 10.9 0.2 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|147920051|ref|YP_686192.1| - 0.0023 17.7 19.9 0.0032 17.2 0.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147920051|ref|YP_686192.1| - 0.03 14.1 5.1 0.03 14.1 3.6 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920051|ref|YP_686192.1| - 0.033 14.0 17.1 0.054 13.3 1.4 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920051|ref|YP_686192.1| - 0.42 11.0 30.1 0.067 13.5 5.9 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|147920051|ref|YP_686192.1| - 1.5 9.2 16.2 5 7.5 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|147920051|ref|YP_686192.1| - 2.3 9.0 19.4 14 6.5 12.3 2.8 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.17 gi|147920052|ref|YP_686191.1| - 4e-98 328.9 0.0 4.9e-98 328.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|147920052|ref|YP_686191.1| - 1.1e-30 105.7 0.0 1.8e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|147920052|ref|YP_686191.1| - 1.2e-22 79.5 1.9 2.3e-22 78.5 1.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MoeA_N PF03453.12 gi|147920053|ref|YP_686190.1| - 2.9e-39 134.0 0.7 3e-38 130.7 0.1 2.2 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|147920053|ref|YP_686190.1| - 2.5e-30 104.7 0.0 3.8e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain TPR_11 PF13414.1 gi|147920054|ref|YP_686189.1| - 9.1e-21 73.2 0.2 7.8e-12 44.6 0.0 3.0 1 1 1 3 3 3 2 TPR repeat TPR_2 PF07719.12 gi|147920054|ref|YP_686189.1| - 5.7e-18 63.3 0.3 8e-06 25.3 0.0 4.1 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147920054|ref|YP_686189.1| - 1.3e-16 59.3 0.2 2e-05 24.0 0.0 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147920054|ref|YP_686189.1| - 3.7e-13 48.5 0.0 0.0094 16.0 0.0 4.0 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147920054|ref|YP_686189.1| - 4.8e-13 48.8 2.2 1.7e-05 24.6 0.1 2.7 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147920054|ref|YP_686189.1| - 1.1e-12 48.1 0.1 5.3e-07 29.8 0.0 3.1 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147920054|ref|YP_686189.1| - 1.5e-12 46.9 0.5 0.017 15.6 0.0 4.1 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147920054|ref|YP_686189.1| - 1e-11 45.1 0.2 0.00046 20.7 0.0 3.1 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147920054|ref|YP_686189.1| - 2.3e-08 33.2 0.2 0.11 12.3 0.0 4.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147920054|ref|YP_686189.1| - 2.9e-08 33.7 0.0 0.0039 17.2 0.0 2.2 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147920054|ref|YP_686189.1| - 8e-07 28.4 0.7 0.0035 17.0 0.0 3.8 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147920054|ref|YP_686189.1| - 2.5e-05 24.4 1.3 1.3 9.6 0.0 4.1 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147920054|ref|YP_686189.1| - 0.003 17.3 0.8 0.88 9.4 0.0 2.7 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|147920054|ref|YP_686189.1| - 0.13 12.1 0.0 0.37 10.7 0.0 1.8 1 1 0 1 1 1 0 Tetratricopeptide repeat ABC_tran PF00005.22 gi|147920055|ref|YP_686188.1| - 8.2e-33 113.5 0.0 1.1e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920055|ref|YP_686188.1| - 9.8e-07 29.0 0.1 0.0013 18.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147920055|ref|YP_686188.1| - 1.3e-05 24.5 0.3 6.4e-05 22.2 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|147920055|ref|YP_686188.1| - 8.8e-05 21.9 0.2 0.0002 20.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147920055|ref|YP_686188.1| - 0.00012 22.4 0.0 0.00016 22.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|147920055|ref|YP_686188.1| - 0.00014 21.0 0.0 0.33 9.9 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|147920055|ref|YP_686188.1| - 0.00091 18.9 0.1 0.0051 16.5 0.0 2.3 3 0 0 3 3 3 1 Part of AAA domain AAA_16 PF13191.1 gi|147920055|ref|YP_686188.1| - 0.0037 17.2 0.7 0.0089 16.0 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|147920055|ref|YP_686188.1| - 0.0086 15.2 0.0 0.017 14.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|147920055|ref|YP_686188.1| - 0.015 14.4 0.1 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|147920055|ref|YP_686188.1| - 0.022 14.2 0.9 2.5 7.4 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain cobW PF02492.14 gi|147920055|ref|YP_686188.1| - 0.054 12.9 0.1 0.096 12.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|147920055|ref|YP_686188.1| - 0.083 13.0 0.1 0.5 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|147920055|ref|YP_686188.1| - 0.09 12.3 0.1 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|147920055|ref|YP_686188.1| - 0.11 11.4 0.3 0.21 10.4 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_13 PF13166.1 gi|147920055|ref|YP_686188.1| - 0.11 10.9 0.0 0.93 7.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|147920055|ref|YP_686188.1| - 0.11 11.5 0.0 0.19 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|147920055|ref|YP_686188.1| - 0.14 12.0 0.1 1.2 9.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|147920055|ref|YP_686188.1| - 0.15 12.3 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|147920055|ref|YP_686188.1| - 0.15 11.9 0.6 3.9 7.4 0.3 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|147920055|ref|YP_686188.1| - 0.27 9.7 2.1 1.5 7.3 0.0 2.6 2 1 1 3 3 3 0 Predicted ATPase of the ABC class NACHT PF05729.7 gi|147920055|ref|YP_686188.1| - 0.3 10.7 1.3 0.5 10.0 0.1 1.9 2 1 0 2 2 2 0 NACHT domain BPD_transp_1 PF00528.17 gi|147920056|ref|YP_686187.1| - 6.1e-19 68.2 18.3 6.1e-19 68.2 12.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SKN1 PF03935.10 gi|147920056|ref|YP_686187.1| - 0.24 9.4 0.4 0.36 8.9 0.3 1.2 1 0 0 1 1 1 0 Beta-glucan synthesis-associated protein (SKN1) SBP_bac_11 PF13531.1 gi|147920057|ref|YP_686186.1| - 1.9e-57 194.5 3.9 2.3e-57 194.3 2.7 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|147920057|ref|YP_686186.1| - 1e-17 64.8 5.5 2.5e-17 63.6 3.8 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|147920057|ref|YP_686186.1| - 1.1e-09 37.5 0.2 1.7e-09 36.9 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_6 PF13343.1 gi|147920057|ref|YP_686186.1| - 3.8e-06 26.4 0.3 5.8e-06 25.8 0.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein OpuAC PF04069.7 gi|147920057|ref|YP_686186.1| - 9.1e-05 21.9 0.5 0.00021 20.7 0.3 1.7 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system PBP_like_2 PF12849.2 gi|147920057|ref|YP_686186.1| - 0.00096 18.6 1.9 0.00096 18.6 1.3 1.9 2 0 0 2 2 2 1 PBP superfamily domain Phosphonate-bd PF12974.2 gi|147920057|ref|YP_686186.1| - 0.0035 16.7 0.2 0.0063 15.9 0.1 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein DUF4245 PF14030.1 gi|147920057|ref|YP_686186.1| - 0.04 13.6 0.3 0.09 12.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) DUF3359 PF11839.3 gi|147920057|ref|YP_686186.1| - 0.074 13.3 2.0 0.13 12.5 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3359) UPF0066 PF01980.11 gi|147920058|ref|YP_686185.1| - 3.7e-41 139.8 0.0 4.7e-41 139.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 AnfO_nitrog PF09582.5 gi|147920059|ref|YP_686184.1| - 9.2e-70 233.8 0.0 1e-69 233.7 0.0 1.0 1 0 0 1 1 1 1 Iron only nitrogenase protein AnfO (AnfO_nitrog) 2Fe-2S_thioredx PF01257.14 gi|147920060|ref|YP_686183.1| - 4.3e-06 26.3 0.0 5.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin Suc_Fer-like PF06999.7 gi|147920060|ref|YP_686183.1| - 0.00036 20.6 0.1 0.0026 17.8 0.0 1.9 2 0 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.6 gi|147920060|ref|YP_686183.1| - 0.00066 19.9 0.0 0.00074 19.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1636) Oxidored_nitro PF00148.14 gi|147920061|ref|YP_686182.1| - 2.6e-116 388.5 0.0 3e-116 388.3 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|147920062|ref|YP_686181.1| - 8.2e-121 403.3 0.9 9.4e-121 403.1 0.6 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase DUF619 PF04768.8 gi|147920062|ref|YP_686181.1| - 0.032 13.6 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF619) Oxidored_nitro PF00148.14 gi|147920063|ref|YP_686180.1| - 1.4e-128 428.9 0.0 1.6e-128 428.7 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Oxidored_nitro PF00148.14 gi|147920064|ref|YP_686179.1| - 3.5e-141 470.4 0.3 4.1e-141 470.2 0.2 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SpoVAE PF14097.1 gi|147920064|ref|YP_686179.1| - 0.072 12.4 0.1 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AE1 YjeF_N PF03853.10 gi|147920064|ref|YP_686179.1| - 0.094 12.3 0.1 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 YjeF-related protein N-terminus P-II PF00543.17 gi|147920065|ref|YP_686178.1| - 6.5e-23 81.1 0.4 2.7e-22 79.1 0.3 1.8 1 1 0 1 1 1 1 Nitrogen regulatory protein P-II P-II PF00543.17 gi|147920066|ref|YP_686177.1| - 1.7e-27 95.8 1.2 1.9e-27 95.7 0.8 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Fer4_NifH PF00142.13 gi|147920067|ref|YP_686176.1| - 1.3e-133 444.3 2.5 1.4e-133 444.2 1.7 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.18 gi|147920067|ref|YP_686176.1| - 3.2e-09 36.4 0.5 8.2e-09 35.1 0.1 1.8 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|147920067|ref|YP_686176.1| - 5.8e-07 28.8 0.9 1e-06 28.0 0.1 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|147920067|ref|YP_686176.1| - 6.8e-06 26.1 0.0 4.1e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|147920067|ref|YP_686176.1| - 0.00011 21.1 0.1 0.00019 20.2 0.0 1.5 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|147920067|ref|YP_686176.1| - 0.00019 20.9 0.0 0.00033 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain MipZ PF09140.6 gi|147920067|ref|YP_686176.1| - 0.0014 17.7 0.1 0.003 16.6 0.1 1.5 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|147920067|ref|YP_686176.1| - 0.0024 17.2 0.1 0.0064 15.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|147920067|ref|YP_686176.1| - 0.0028 17.6 0.0 0.0061 16.5 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain MobB PF03205.9 gi|147920067|ref|YP_686176.1| - 0.014 15.1 0.2 0.027 14.1 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|147920067|ref|YP_686176.1| - 0.015 14.7 0.1 0.03 13.7 0.1 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|147920067|ref|YP_686176.1| - 0.022 14.4 0.2 0.051 13.3 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|147920067|ref|YP_686176.1| - 0.031 13.8 2.7 0.055 13.0 0.5 2.2 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein NB-ARC PF00931.17 gi|147920067|ref|YP_686176.1| - 0.035 12.9 0.2 0.091 11.5 0.0 1.8 2 1 1 3 3 3 0 NB-ARC domain SRP54 PF00448.17 gi|147920067|ref|YP_686176.1| - 0.042 13.2 1.0 0.067 12.6 0.3 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|147920067|ref|YP_686176.1| - 0.082 12.6 0.9 0.28 10.8 0.2 2.0 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|147920067|ref|YP_686176.1| - 0.083 13.0 0.1 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|147920067|ref|YP_686176.1| - 0.097 12.2 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|147920067|ref|YP_686176.1| - 0.14 11.7 0.1 0.24 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|147920067|ref|YP_686176.1| - 0.16 12.1 0.3 0.36 11.0 0.0 1.7 2 0 0 2 2 2 0 RNA helicase Methyltransf_11 PF08241.7 gi|147920068|ref|YP_686174.1| - 3.4e-22 78.7 0.0 4.9e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920068|ref|YP_686174.1| - 1.2e-18 67.1 0.0 1.6e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920068|ref|YP_686174.1| - 1.1e-12 48.0 0.0 1.8e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920068|ref|YP_686174.1| - 5.1e-12 46.3 0.0 8e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920068|ref|YP_686174.1| - 4.2e-11 43.1 0.0 5.9e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920068|ref|YP_686174.1| - 1.8e-10 41.1 0.0 3.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147920068|ref|YP_686174.1| - 1.1e-08 35.1 0.0 1.8e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920068|ref|YP_686174.1| - 3.9e-07 29.4 0.0 5e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|147920068|ref|YP_686174.1| - 1.1e-06 28.4 0.0 2.2e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|147920068|ref|YP_686174.1| - 0.0001 20.7 0.0 0.00012 20.5 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.13 gi|147920068|ref|YP_686174.1| - 0.00015 21.0 0.0 0.00022 20.5 0.0 1.3 1 1 0 1 1 1 1 O-methyltransferase NNMT_PNMT_TEMT PF01234.12 gi|147920068|ref|YP_686174.1| - 0.069 12.1 0.0 0.13 11.1 0.0 1.6 2 0 0 2 2 2 0 NNMT/PNMT/TEMT family TetR_N PF00440.18 gi|147920070|ref|YP_686172.1| - 2.1e-14 52.8 0.1 4e-14 51.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family GntR PF00392.16 gi|147920070|ref|YP_686172.1| - 0.023 14.1 0.2 0.55 9.7 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_7 PF02796.10 gi|147920070|ref|YP_686172.1| - 0.13 12.1 0.0 0.43 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase CBM_14 PF01607.19 gi|147920071|ref|YP_686171.1| - 2.8e-06 27.1 3.1 0.0081 16.0 0.2 2.5 1 1 1 2 2 2 2 Chitin binding Peritrophin-A domain TIL PF01826.12 gi|147920071|ref|YP_686171.1| - 0.017 15.2 0.1 1.9 8.6 0.0 2.4 2 0 0 2 2 2 0 Trypsin Inhibitor like cysteine rich domain DUF4179 PF13786.1 gi|147920071|ref|YP_686171.1| - 0.028 14.6 0.0 0.041 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) TNFR_c6 PF00020.13 gi|147920071|ref|YP_686171.1| - 3.6 7.7 6.2 5.2 7.2 0.7 2.4 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Kunitz_BPTI PF00014.18 gi|147920071|ref|YP_686171.1| - 5.2 7.3 9.0 9.2 6.5 0.5 2.6 2 1 1 3 3 3 0 Kunitz/Bovine pancreatic trypsin inhibitor domain Nitroreductase PF00881.19 gi|147920072|ref|YP_686170.1| - 1.2e-15 57.7 3.9 0.00021 21.1 0.0 3.5 2 2 2 4 4 4 3 Nitroreductase family TM1586_NiRdase PF14512.1 gi|147920072|ref|YP_686170.1| - 4.2e-09 35.9 0.0 0.0012 18.0 0.0 2.7 2 1 0 2 2 2 2 Putative TM nitroreductase Trypsin_2 PF13365.1 gi|147920075|ref|YP_686167.1| - 6.8e-24 84.1 0.4 1.1e-23 83.5 0.3 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|147920075|ref|YP_686167.1| - 5.9e-15 55.4 0.0 1.3e-14 54.3 0.0 1.5 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|147920075|ref|YP_686167.1| - 1.4e-14 53.6 0.4 8.7e-14 51.1 0.0 2.2 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|147920075|ref|YP_686167.1| - 3.5e-08 33.4 0.2 1.6e-07 31.4 0.0 2.2 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|147920075|ref|YP_686167.1| - 6.3e-06 24.9 0.7 0.0068 14.8 0.1 2.1 2 0 0 2 2 2 2 Peptidase S46 Peptidase_S7 PF00949.16 gi|147920075|ref|YP_686167.1| - 0.023 14.0 0.1 0.045 13.1 0.1 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Rubrerythrin PF02915.12 gi|147920076|ref|YP_686166.1| - 2.9e-34 118.3 3.1 3.5e-34 118.0 2.1 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|147920076|ref|YP_686166.1| - 5.5e-07 29.4 2.7 6.7e-06 25.9 2.2 1.9 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|147920076|ref|YP_686166.1| - 0.012 15.4 0.7 0.76 9.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) RRF_GI PF12614.3 gi|147920076|ref|YP_686166.1| - 0.049 13.4 0.1 0.25 11.1 0.0 1.9 2 0 0 2 2 2 0 Ribosome recycling factor HypA PF01155.14 gi|147920076|ref|YP_686166.1| - 0.093 12.4 0.5 0.17 11.5 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|147920076|ref|YP_686166.1| - 0.5 10.0 5.5 2.3 7.9 1.4 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Desulfoferrodox PF01880.13 gi|147920077|ref|YP_686165.1| - 6.4e-28 96.8 0.4 8.2e-28 96.5 0.3 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin Desulfoferrod_N PF06397.7 gi|147920077|ref|YP_686165.1| - 2.4e-20 71.6 6.8 4.2e-20 70.8 4.7 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain OCD_Mu_crystall PF02423.10 gi|147920078|ref|YP_686163.1| - 2.7e-98 328.6 0.2 3e-98 328.4 0.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|147920078|ref|YP_686163.1| - 0.0042 17.1 0.0 0.0067 16.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|147920078|ref|YP_686163.1| - 0.11 12.9 0.0 0.28 11.6 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PHP PF02811.14 gi|147920079|ref|YP_686162.1| - 4.3e-14 52.6 0.0 8.4e-14 51.7 0.0 1.5 1 1 0 1 1 1 1 PHP domain Flavodoxin_1 PF00258.20 gi|147920081|ref|YP_686160.1| - 2.4e-10 40.5 0.1 3.1e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|147920081|ref|YP_686160.1| - 1.1e-08 34.7 0.0 1.4e-07 31.0 0.0 2.0 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|147920081|ref|YP_686160.1| - 2.1e-05 24.5 0.0 4.7e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|147920081|ref|YP_686160.1| - 7e-05 22.3 0.0 0.00012 21.5 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|147920081|ref|YP_686160.1| - 0.00014 21.2 0.1 0.19 11.0 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_2 PF02525.12 gi|147920081|ref|YP_686160.1| - 0.029 13.8 0.0 0.09 12.2 0.0 1.8 1 1 1 2 2 2 0 Flavodoxin-like fold RCC1 PF00415.13 gi|147920082|ref|YP_686159.1| - 4.7e-50 167.5 22.9 1.3e-11 44.5 0.1 7.1 6 1 0 6 6 6 6 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|147920082|ref|YP_686159.1| - 1.6e-41 139.0 42.5 1.2e-08 34.3 1.4 6.4 6 0 0 6 6 6 6 Regulator of chromosome condensation (RCC1) repeat ABC2_membrane_2 PF12679.2 gi|147920083|ref|YP_686158.1| - 4.7e-12 45.3 20.7 9.8e-12 44.3 14.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920083|ref|YP_686158.1| - 2.6e-10 39.8 26.7 2.6e-10 39.8 18.5 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920083|ref|YP_686158.1| - 9.3e-05 21.6 25.7 9.3e-05 21.6 17.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920083|ref|YP_686158.1| - 0.051 12.8 32.8 0.019 14.2 18.9 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920084|ref|YP_686157.1| - 8.2e-19 67.5 24.0 9.5e-19 67.3 16.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920084|ref|YP_686157.1| - 3e-11 42.9 32.1 4.4e-11 42.4 22.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920084|ref|YP_686157.1| - 0.0023 17.0 26.4 0.0023 17.0 18.3 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF1495 PF07381.6 gi|147920086|ref|YP_686155.1| - 1.6e-31 107.7 0.0 2.2e-31 107.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF1495 PF07381.6 gi|147920087|ref|YP_686154.1| - 2.5e-08 33.4 0.0 3.5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF488 PF04343.8 gi|147920088|ref|YP_686153.1| - 1.9e-25 89.6 0.0 2.8e-25 89.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF4326 PF14216.1 gi|147920088|ref|YP_686153.1| - 0.033 14.7 0.0 0.046 14.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4326) GMP_synt_C PF00958.17 gi|147920090|ref|YP_686151.1| - 1.6e-31 107.8 0.0 2.8e-31 107.0 0.0 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|147920090|ref|YP_686151.1| - 5.1e-10 38.6 0.1 0.00013 20.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|147920090|ref|YP_686151.1| - 0.00031 19.4 0.0 0.0088 14.6 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|147920090|ref|YP_686151.1| - 0.00031 20.3 0.0 0.00052 19.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|147920090|ref|YP_686151.1| - 0.0006 19.1 0.0 0.0028 16.9 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|147920090|ref|YP_686151.1| - 0.009 15.4 0.0 0.044 13.2 0.0 2.1 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Arginosuc_synth PF00764.14 gi|147920090|ref|YP_686151.1| - 0.098 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|147920090|ref|YP_686151.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|147920090|ref|YP_686151.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.6 1 1 0 1 1 1 0 PP-loop family Aminotran_3 PF00202.16 gi|147920091|ref|YP_686150.1| - 1.3e-116 389.1 0.4 1.5e-116 388.9 0.3 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|147920091|ref|YP_686150.1| - 1.1e-06 27.8 0.0 6.7e-06 25.2 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147920091|ref|YP_686150.1| - 0.00039 19.6 0.1 0.0012 18.0 0.0 1.8 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|147920091|ref|YP_686150.1| - 0.00043 19.1 0.0 0.005 15.6 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|147920091|ref|YP_686150.1| - 0.0012 17.2 0.0 0.0017 16.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF3382 PF11862.3 gi|147920091|ref|YP_686150.1| - 0.092 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) ABC_tran PF00005.22 gi|147920092|ref|YP_686149.1| - 7.1e-24 84.6 0.0 1e-23 84.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920092|ref|YP_686149.1| - 1e-06 28.9 3.2 0.014 15.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147920092|ref|YP_686149.1| - 0.00056 19.1 0.2 0.36 10.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|147920092|ref|YP_686149.1| - 0.0034 16.5 0.0 0.0052 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|147920092|ref|YP_686149.1| - 0.0036 16.7 0.1 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147920092|ref|YP_686149.1| - 0.0063 16.8 0.7 0.037 14.3 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|147920092|ref|YP_686149.1| - 0.022 14.1 0.0 0.046 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|147920092|ref|YP_686149.1| - 0.032 13.7 0.0 0.042 13.3 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain UPF0051 PF01458.12 gi|147920093|ref|YP_686148.1| - 6e-55 186.1 0.0 7.7e-55 185.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) zf-AN1 PF01428.11 gi|147920094|ref|YP_686147.1| - 1.3e-08 34.5 8.4 2.2e-08 33.8 5.8 1.3 1 0 0 1 1 1 1 AN1-like Zinc finger FYVE PF01363.16 gi|147920094|ref|YP_686147.1| - 0.031 14.1 1.9 0.053 13.4 1.3 1.3 1 0 0 1 1 1 0 FYVE zinc finger TMEM173 PF15009.1 gi|147920094|ref|YP_686147.1| - 0.2 10.4 0.5 0.35 9.6 0.4 1.3 1 0 0 1 1 1 0 Transmembrane protein 173 FeS PF04060.8 gi|147920095|ref|YP_686146.1| - 5.4e-07 29.0 1.0 5.4e-07 29.0 0.7 2.3 2 0 0 2 2 2 1 Putative Fe-S cluster Aminotran_5 PF00266.14 gi|147920096|ref|YP_686145.1| - 1.1e-78 264.6 0.0 1.2e-78 264.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|147920096|ref|YP_686145.1| - 3.1e-10 39.6 0.0 4.4e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|147920096|ref|YP_686145.1| - 6.1e-09 35.3 0.1 1e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.16 gi|147920096|ref|YP_686145.1| - 0.067 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III cobW PF02492.14 gi|147920097|ref|YP_686144.1| - 6.5e-18 64.8 0.0 8.7e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|147920097|ref|YP_686144.1| - 1.1e-06 27.6 0.0 0.028 13.2 0.0 2.2 2 0 0 2 2 2 2 ArgK protein CbiA PF01656.18 gi|147920097|ref|YP_686144.1| - 9.4e-06 25.1 0.0 1.6e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|147920097|ref|YP_686144.1| - 4.1e-05 23.2 0.0 8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|147920097|ref|YP_686144.1| - 0.00045 19.7 0.1 0.032 13.7 0.0 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|147920097|ref|YP_686144.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|147920097|ref|YP_686144.1| - 0.0016 17.8 0.0 0.0042 16.5 0.0 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|147920097|ref|YP_686144.1| - 0.0076 15.9 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 NTPase AAA_26 PF13500.1 gi|147920097|ref|YP_686144.1| - 0.014 15.0 0.0 0.39 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|147920097|ref|YP_686144.1| - 0.015 14.5 0.0 0.021 14.0 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|147920097|ref|YP_686144.1| - 0.016 15.2 0.1 0.034 14.1 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|147920097|ref|YP_686144.1| - 0.024 14.0 0.0 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|147920097|ref|YP_686144.1| - 0.024 14.5 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|147920097|ref|YP_686144.1| - 0.034 14.9 0.1 0.055 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|147920097|ref|YP_686144.1| - 0.037 14.1 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.13 gi|147920097|ref|YP_686144.1| - 0.038 13.2 0.6 4.1 6.6 0.0 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B AAA_33 PF13671.1 gi|147920097|ref|YP_686144.1| - 0.044 13.6 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RecA PF00154.16 gi|147920097|ref|YP_686144.1| - 0.062 12.3 0.0 0.14 11.2 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA PF00004.24 gi|147920097|ref|YP_686144.1| - 0.1 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MipZ PF09140.6 gi|147920097|ref|YP_686144.1| - 0.16 11.0 0.0 0.51 9.3 0.0 1.8 1 1 0 1 1 1 0 ATPase MipZ ABC_tran PF00005.22 gi|147920098|ref|YP_686143.1| - 2.1e-14 53.9 0.0 3.5e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920098|ref|YP_686143.1| - 2e-07 31.2 0.1 0.017 15.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|147920098|ref|YP_686143.1| - 5.4e-05 23.3 0.2 0.00031 20.8 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|147920098|ref|YP_686143.1| - 6e-05 22.9 0.0 0.043 13.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|147920098|ref|YP_686143.1| - 0.00086 19.0 0.1 0.012 15.3 0.1 2.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|147920098|ref|YP_686143.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|147920098|ref|YP_686143.1| - 0.0055 15.9 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|147920098|ref|YP_686143.1| - 0.0072 16.6 0.1 0.0081 16.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|147920098|ref|YP_686143.1| - 0.0075 16.2 0.0 0.026 14.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|147920098|ref|YP_686143.1| - 0.01 16.0 0.1 0.66 10.1 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|147920098|ref|YP_686143.1| - 0.014 14.6 0.0 2.5 7.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|147920098|ref|YP_686143.1| - 0.015 15.0 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|147920098|ref|YP_686143.1| - 0.016 16.0 0.0 0.041 14.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|147920098|ref|YP_686143.1| - 0.019 14.3 0.1 0.064 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|147920098|ref|YP_686143.1| - 0.021 14.3 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|147920098|ref|YP_686143.1| - 0.023 14.3 0.1 0.072 12.7 0.0 1.9 2 1 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|147920098|ref|YP_686143.1| - 0.026 14.4 0.1 0.054 13.4 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|147920098|ref|YP_686143.1| - 0.035 12.9 0.0 0.064 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.9 gi|147920098|ref|YP_686143.1| - 0.055 13.1 0.0 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|147920098|ref|YP_686143.1| - 0.058 12.8 0.1 0.7 9.2 0.0 2.2 1 1 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|147920098|ref|YP_686143.1| - 0.07 13.4 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|147920098|ref|YP_686143.1| - 0.079 12.4 0.1 0.2 11.1 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.11 gi|147920098|ref|YP_686143.1| - 0.081 12.1 0.0 0.93 8.6 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.1 gi|147920098|ref|YP_686143.1| - 0.089 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|147920098|ref|YP_686143.1| - 0.089 12.5 0.0 0.27 11.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain RNA_helicase PF00910.17 gi|147920098|ref|YP_686143.1| - 0.17 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ThiS PF02597.15 gi|147920099|ref|YP_686142.1| - 4.2e-19 68.7 0.1 4.7e-19 68.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|147920099|ref|YP_686142.1| - 0.007 16.4 0.0 0.0075 16.3 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiF PF00899.16 gi|147920100|ref|YP_686141.1| - 6.6e-44 149.0 0.0 1.1e-43 148.2 0.0 1.4 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|147920100|ref|YP_686141.1| - 1.5e-22 79.0 0.1 2.5e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain eIF2A PF08662.6 gi|147920100|ref|YP_686141.1| - 0.0051 16.5 0.0 0.18 11.4 0.0 2.1 2 0 0 2 2 2 1 Eukaryotic translation initiation factor eIF2A Shikimate_DH PF01488.15 gi|147920100|ref|YP_686141.1| - 0.027 14.5 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|147920100|ref|YP_686141.1| - 0.06 12.7 0.0 0.084 12.2 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NMT1_2 PF13379.1 gi|147920101|ref|YP_686140.1| - 1.2e-22 80.5 0.0 1.4e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|147920101|ref|YP_686140.1| - 0.0015 18.1 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like DUF3834 PF12916.2 gi|147920101|ref|YP_686140.1| - 0.0053 15.7 0.0 0.56 9.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.15 gi|147920101|ref|YP_686140.1| - 0.019 14.2 0.0 0.33 10.1 0.0 2.0 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 OpuAC PF04069.7 gi|147920101|ref|YP_686140.1| - 0.039 13.3 0.0 0.59 9.4 0.0 2.0 1 1 1 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system NifU_N PF01592.11 gi|147920102|ref|YP_686139.1| - 5.2e-51 171.8 0.2 5.8e-51 171.7 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Aminotran_5 PF00266.14 gi|147920103|ref|YP_686138.1| - 9.9e-97 323.9 0.1 1.1e-96 323.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|147920103|ref|YP_686138.1| - 1.8e-12 47.0 0.1 2.6e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|147920103|ref|YP_686138.1| - 5e-11 42.2 0.5 9.1e-11 41.3 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Pyridoxal_deC PF00282.14 gi|147920103|ref|YP_686138.1| - 0.00049 18.6 0.3 0.00086 17.8 0.1 1.4 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Cys_Met_Meta_PP PF01053.15 gi|147920103|ref|YP_686138.1| - 0.0011 17.3 0.0 0.0016 16.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Bul1_N PF04425.7 gi|147920104|ref|YP_686136.1| - 0.016 13.7 0.0 0.02 13.4 0.0 1.1 1 0 0 1 1 1 0 Bul1 N terminus DUF461 PF04314.8 gi|147920104|ref|YP_686136.1| - 0.03 13.9 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF461) CBM49 PF09478.5 gi|147920104|ref|YP_686136.1| - 0.054 13.5 0.0 0.084 12.9 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate binding domain CBM49 Abhydrolase_1 PF00561.15 gi|147920105|ref|YP_686135.1| - 7.8e-30 104.1 0.0 1.1e-29 103.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold CBS PF00571.23 gi|147920105|ref|YP_686135.1| - 2.7e-27 94.2 3.7 7.6e-15 54.4 0.1 2.4 2 0 0 2 2 2 2 CBS domain Abhydrolase_6 PF12697.2 gi|147920105|ref|YP_686135.1| - 1.2e-09 38.3 0.0 2.1e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|147920105|ref|YP_686135.1| - 0.008 15.6 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Abhydrolase_5 PF12695.2 gi|147920105|ref|YP_686135.1| - 0.014 15.1 0.0 0.092 12.5 0.0 2.2 1 1 0 1 1 1 0 Alpha/beta hydrolase family Cys_Met_Meta_PP PF01053.15 gi|147920106|ref|YP_686134.1| - 4.2e-141 469.7 0.0 4.8e-141 469.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|147920106|ref|YP_686134.1| - 2.3e-11 43.3 0.1 3.4e-11 42.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|147920106|ref|YP_686134.1| - 8.8e-06 24.6 0.0 3.4e-05 22.7 0.0 2.0 2 1 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|147920106|ref|YP_686134.1| - 5.5e-05 22.2 0.0 8.4e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147920106|ref|YP_686134.1| - 0.0033 16.5 0.0 0.029 13.5 0.0 2.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|147920107|ref|YP_686133.1| - 9e-17 60.8 0.0 1.2e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SLA_LP_auto_ag PF05889.8 gi|147920107|ref|YP_686133.1| - 1.3e-12 46.8 0.0 2.2e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|147920107|ref|YP_686133.1| - 1.2e-05 24.6 0.1 2.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|147920107|ref|YP_686133.1| - 3.3e-05 23.0 0.1 4.8e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HTH_24 PF13412.1 gi|147920108|ref|YP_686130.1| - 6.8e-06 25.3 0.0 9.2e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147920108|ref|YP_686130.1| - 0.0017 17.9 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|147920108|ref|YP_686130.1| - 0.0028 17.0 0.1 0.0036 16.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|147920108|ref|YP_686130.1| - 0.042 14.1 0.0 0.05 13.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Radical_SAM PF04055.16 gi|147920110|ref|YP_686128.1| - 3.8e-13 49.9 0.1 5.2e-13 49.4 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF2540 PF10802.3 gi|147920110|ref|YP_686128.1| - 0.12 12.0 0.0 0.35 10.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) ThiI PF02568.9 gi|147920111|ref|YP_686127.1| - 1.8e-56 190.7 0.0 2.3e-56 190.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|147920111|ref|YP_686127.1| - 1.2e-15 57.6 0.0 3.9e-15 56.0 0.0 1.8 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|147920111|ref|YP_686127.1| - 1.7e-06 27.4 0.0 0.056 12.7 0.0 2.8 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|147920111|ref|YP_686127.1| - 0.00025 19.7 0.0 0.00053 18.6 0.0 1.5 1 0 0 1 1 1 1 tRNA methyl transferase Oxidored_nitro PF00148.14 gi|147920111|ref|YP_686127.1| - 0.0026 16.4 0.0 0.007 15.0 0.0 1.8 1 1 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase NifZ PF04319.8 gi|147920111|ref|YP_686127.1| - 0.069 12.5 0.0 0.21 10.9 0.0 1.8 2 0 0 2 2 2 0 NifZ domain ATP_bind_3 PF01171.15 gi|147920112|ref|YP_686126.1| - 2e-05 24.1 0.0 0.00024 20.6 0.0 2.4 2 1 0 2 2 2 1 PP-loop family Asn_synthase PF00733.16 gi|147920112|ref|YP_686126.1| - 2.6e-05 23.8 0.0 5.2e-05 22.8 0.0 1.5 2 0 0 2 2 2 1 Asparagine synthase NAD_synthase PF02540.12 gi|147920112|ref|YP_686126.1| - 0.00014 20.8 0.0 0.00038 19.4 0.0 1.6 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|147920112|ref|YP_686126.1| - 0.011 15.0 0.1 0.53 9.5 0.0 2.7 1 1 1 2 2 2 0 Queuosine biosynthesis protein QueC PASTA PF03793.14 gi|147920112|ref|YP_686126.1| - 0.045 13.3 0.0 9.6 5.9 0.0 2.5 1 1 1 2 2 2 0 PASTA domain tRNA_Me_trans PF03054.11 gi|147920112|ref|YP_686126.1| - 0.13 10.8 0.0 2.3 6.6 0.0 2.5 3 0 0 3 3 3 0 tRNA methyl transferase HTH_3 PF01381.17 gi|147920113|ref|YP_686124.1| - 8.3e-08 31.9 0.1 1.4e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147920113|ref|YP_686124.1| - 1.6e-05 24.8 0.1 2.8e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|147920113|ref|YP_686124.1| - 3.2e-05 23.2 0.0 5.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|147920113|ref|YP_686124.1| - 0.00039 19.9 0.0 0.00065 19.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|147920113|ref|YP_686124.1| - 0.00097 18.3 0.1 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|147920113|ref|YP_686124.1| - 0.0015 18.3 0.1 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|147920113|ref|YP_686124.1| - 0.0026 17.4 0.0 0.005 16.5 0.0 1.5 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF4473 PF14747.1 gi|147920113|ref|YP_686124.1| - 0.0034 17.5 0.1 0.0055 16.9 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4473) HTH_11 PF08279.7 gi|147920113|ref|YP_686124.1| - 0.0041 16.7 0.2 0.0066 16.0 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_26 PF13443.1 gi|147920113|ref|YP_686124.1| - 0.0041 17.2 0.2 0.0097 16.0 0.0 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4_2 PF08281.7 gi|147920113|ref|YP_686124.1| - 0.0046 16.3 0.1 0.008 15.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|147920113|ref|YP_686124.1| - 0.0054 16.3 0.0 0.0084 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_17 PF12728.2 gi|147920113|ref|YP_686124.1| - 0.01 16.0 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|147920113|ref|YP_686124.1| - 0.011 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|147920113|ref|YP_686124.1| - 0.015 14.7 0.1 0.032 13.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|147920113|ref|YP_686124.1| - 0.026 14.5 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|147920113|ref|YP_686124.1| - 0.027 14.1 0.1 0.059 13.0 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|147920113|ref|YP_686124.1| - 0.029 13.9 0.0 0.097 12.2 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Cro PF09048.5 gi|147920113|ref|YP_686124.1| - 0.043 13.4 0.1 0.072 12.7 0.1 1.4 1 0 0 1 1 1 0 Cro Phage_NinH PF06322.6 gi|147920113|ref|YP_686124.1| - 0.048 13.2 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Phage NinH protein HTH_Tnp_ISL3 PF13542.1 gi|147920113|ref|YP_686124.1| - 0.064 12.4 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.14 gi|147920113|ref|YP_686124.1| - 0.064 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain P22_Cro PF14549.1 gi|147920113|ref|YP_686124.1| - 0.066 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Linker_histone PF00538.14 gi|147920113|ref|YP_686124.1| - 0.092 12.8 0.5 0.14 12.2 0.4 1.3 1 0 0 1 1 1 0 linker histone H1 and H5 family HTH_Crp_2 PF13545.1 gi|147920113|ref|YP_686124.1| - 0.093 12.5 0.0 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Pribosyltran PF00156.22 gi|147920114|ref|YP_686123.1| - 4.9e-22 77.9 1.8 6.9e-22 77.5 1.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|147920114|ref|YP_686123.1| - 6.3e-06 25.5 0.1 9e-06 25.0 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|147920114|ref|YP_686123.1| - 0.0014 17.9 0.1 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Pyridoxal_deC PF00282.14 gi|147920116|ref|YP_686121.1| - 5.1e-38 130.4 0.0 6.8e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|147920116|ref|YP_686121.1| - 5.9e-13 48.2 0.1 3.3e-12 45.8 0.1 1.9 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|147920116|ref|YP_686121.1| - 7.7e-09 34.9 0.0 3.6e-08 32.7 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147920116|ref|YP_686121.1| - 7.9e-05 21.9 0.0 0.00012 21.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|147920116|ref|YP_686121.1| - 0.00017 20.1 0.0 0.0017 16.8 0.0 2.0 1 1 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DegT_DnrJ_EryC1 PF01041.12 gi|147920116|ref|YP_686121.1| - 0.0021 17.1 0.2 0.0045 16.0 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.11 gi|147920116|ref|YP_686121.1| - 0.0024 16.6 0.0 1.3 7.6 0.0 2.2 2 0 0 2 2 2 2 Glycine cleavage system P-protein DUF3947 PF13135.1 gi|147920116|ref|YP_686121.1| - 0.54 10.4 2.3 2 8.6 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3947) PPDK_N PF01326.14 gi|147920117|ref|YP_686120.1| - 5.1e-105 351.1 0.1 1.7e-104 349.4 0.1 1.8 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|147920117|ref|YP_686120.1| - 2.1e-83 279.5 0.5 3.4e-83 278.9 0.3 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|147920117|ref|YP_686120.1| - 1.5e-27 94.9 1.3 5e-27 93.2 0.9 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HTH_3 PF01381.17 gi|147920118|ref|YP_686119.1| - 6.2e-08 32.3 0.0 1.2e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147920118|ref|YP_686119.1| - 4.3e-07 29.8 0.0 8.2e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|147920118|ref|YP_686119.1| - 1.1e-05 24.6 0.6 0.14 11.4 0.2 2.2 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_31 PF13560.1 gi|147920118|ref|YP_686119.1| - 4.5e-05 23.5 0.0 7.7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|147920118|ref|YP_686119.1| - 0.0075 16.0 0.0 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|147920118|ref|YP_686119.1| - 0.013 15.2 0.1 0.035 13.9 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_25 PF13413.1 gi|147920118|ref|YP_686119.1| - 0.096 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3437 PF11919.3 gi|147920119|ref|YP_686118.1| - 0.071 12.8 0.1 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) 2-Hacid_dh_C PF02826.14 gi|147920120|ref|YP_686117.1| - 1.5e-66 222.9 0.0 3.1e-66 221.9 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|147920120|ref|YP_686117.1| - 2.4e-39 133.8 0.3 4.9e-39 132.8 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|147920120|ref|YP_686117.1| - 4.2e-10 38.8 0.4 2.9e-09 36.2 0.2 2.6 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.10 gi|147920120|ref|YP_686117.1| - 3.4e-06 26.9 0.1 9.7e-06 25.5 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|147920120|ref|YP_686117.1| - 0.00048 19.5 0.1 0.0014 18.0 0.0 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|147920120|ref|YP_686117.1| - 0.0031 17.9 0.1 0.031 14.7 0.0 2.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_C PF03720.10 gi|147920120|ref|YP_686117.1| - 0.0093 16.1 0.1 0.31 11.2 0.0 3.0 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SASP PF00269.15 gi|147920120|ref|YP_686117.1| - 0.11 12.3 1.0 0.38 10.6 0.1 2.5 2 0 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type PIR PF00399.14 gi|147920120|ref|YP_686117.1| - 0.14 11.5 1.3 0.35 10.2 0.9 1.7 1 0 0 1 1 1 0 Yeast PIR protein repeat HEPN PF05168.9 gi|147920121|ref|YP_686116.1| - 2.7e-13 49.8 1.5 3.2e-13 49.5 1.0 1.1 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|147920121|ref|YP_686116.1| - 0.16 12.0 0.8 0.78 9.8 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) NTP_transf_2 PF01909.18 gi|147920122|ref|YP_686115.1| - 6.4e-11 42.4 0.3 1.4e-10 41.3 0.1 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|147920122|ref|YP_686115.1| - 1.8e-06 27.5 0.0 3.6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|147920122|ref|YP_686115.1| - 0.00047 19.4 0.0 0.0014 17.9 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|147920122|ref|YP_686115.1| - 0.00071 19.4 0.0 0.0025 17.7 0.0 1.9 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|147920122|ref|YP_686115.1| - 0.0034 17.0 0.0 0.0064 16.1 0.0 1.5 1 0 0 1 1 1 1 MarR family PaaX PF07848.7 gi|147920122|ref|YP_686115.1| - 0.0099 15.8 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 PaaX-like protein TrmB PF01978.14 gi|147920122|ref|YP_686115.1| - 0.053 13.2 0.0 0.18 11.5 0.0 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Nuc-transf PF10127.4 gi|147920122|ref|YP_686115.1| - 0.092 12.0 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Predicted nucleotidyltransferase HTH_20 PF12840.2 gi|147920122|ref|YP_686115.1| - 0.13 12.1 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4130 PF13566.1 gi|147920122|ref|YP_686115.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4130 DUF872 PF05915.7 gi|147920123|ref|YP_686114.1| - 0.011 15.5 1.7 0.042 13.7 0.2 2.0 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) TctB PF07331.6 gi|147920123|ref|YP_686114.1| - 0.036 13.7 8.4 0.054 13.1 5.8 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family EamA PF00892.15 gi|147920123|ref|YP_686114.1| - 0.088 12.8 10.9 0.97 9.4 2.5 2.3 1 1 0 2 2 2 0 EamA-like transporter family DUF3087 PF11286.3 gi|147920123|ref|YP_686114.1| - 0.17 11.0 3.2 0.099 11.8 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) PetG PF02529.10 gi|147920123|ref|YP_686114.1| - 0.19 11.2 0.4 0.19 11.2 0.3 2.9 3 0 0 3 3 3 0 Cytochrome B6-F complex subunit 5 DUF998 PF06197.8 gi|147920123|ref|YP_686114.1| - 0.33 10.2 17.5 0.7 9.1 12.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF998) IncA PF04156.9 gi|147920123|ref|YP_686114.1| - 0.48 10.0 10.2 0.12 11.9 4.8 1.8 1 1 1 2 2 2 0 IncA protein DUF1282 PF06930.7 gi|147920123|ref|YP_686114.1| - 0.78 9.3 6.3 1.8 8.1 4.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) Cytochrom_B_N PF00033.14 gi|147920123|ref|YP_686114.1| - 0.88 8.8 6.2 1.1 8.5 0.4 2.3 2 0 0 2 2 2 0 Cytochrome b(N-terminal)/b6/petB SdpI PF13630.1 gi|147920123|ref|YP_686114.1| - 0.88 9.3 9.3 0.85 9.3 1.6 2.5 2 1 0 2 2 2 0 SdpI/YhfL protein family Tetraspannin PF00335.15 gi|147920123|ref|YP_686114.1| - 1.1 8.5 11.0 5.6 6.1 7.6 1.8 1 1 0 1 1 1 0 Tetraspanin family SyrA PF11089.3 gi|147920123|ref|YP_686114.1| - 1.2 9.0 5.0 0.34 10.7 0.4 2.3 2 0 0 2 2 2 0 Exopolysaccharide production repressor DUF4191 PF13829.1 gi|147920123|ref|YP_686114.1| - 1.5 7.9 4.9 2 7.5 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF4231 PF14015.1 gi|147920123|ref|YP_686114.1| - 2.3 8.2 9.8 0.12 12.3 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) VIT1 PF01988.14 gi|147920123|ref|YP_686114.1| - 5 6.5 13.1 2.9 7.3 1.8 2.1 2 0 0 2 2 2 0 VIT family DUF4149 PF13664.1 gi|147920123|ref|YP_686114.1| - 8.4 6.5 10.9 7.2 6.7 2.1 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4149) DUF3796 PF12676.2 gi|147920124|ref|YP_686113.1| - 0.0057 16.8 7.6 0.029 14.5 5.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3796) DUF2178 PF09946.4 gi|147920124|ref|YP_686113.1| - 0.0092 15.7 3.3 0.012 15.3 2.3 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) CRPA PF05745.6 gi|147920124|ref|YP_686113.1| - 0.1 12.4 2.7 0.18 11.6 1.8 1.5 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF4418 PF14387.1 gi|147920124|ref|YP_686113.1| - 0.1 12.3 6.4 0.019 14.7 1.5 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) SdpI PF13630.1 gi|147920124|ref|YP_686113.1| - 2.4 7.9 15.8 0.66 9.7 1.8 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF373 PF04123.8 gi|147920124|ref|YP_686113.1| - 2.6 6.9 9.1 5.5 5.9 6.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) DUF3784 PF12650.2 gi|147920124|ref|YP_686113.1| - 3.7 7.5 10.2 2.2 8.2 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) BPD_transp_2 PF02653.11 gi|147920124|ref|YP_686113.1| - 7.8 5.3 12.0 15 4.4 8.3 1.4 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component HTH_3 PF01381.17 gi|147920125|ref|YP_686112.1| - 2.2e-15 56.2 0.0 2.5e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147920125|ref|YP_686112.1| - 3.3e-12 46.2 0.1 3.7e-12 46.1 0.1 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|147920125|ref|YP_686112.1| - 6.5e-08 32.6 0.0 7e-08 32.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|147920125|ref|YP_686112.1| - 2.6e-07 30.7 0.0 3e-07 30.5 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|147920125|ref|YP_686112.1| - 0.0073 16.0 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_25 PF13413.1 gi|147920125|ref|YP_686112.1| - 0.013 15.1 0.0 0.017 14.7 0.0 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.1 gi|147920125|ref|YP_686112.1| - 0.019 14.7 0.0 0.037 13.8 0.0 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|147920125|ref|YP_686112.1| - 0.034 13.4 0.1 0.049 12.9 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF372 PF04036.7 gi|147920126|ref|YP_686111.1| - 8e-23 79.6 0.0 1.3e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|147920126|ref|YP_686111.1| - 1.6e-22 79.3 0.1 2.2e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) Yip1 PF04893.12 gi|147920127|ref|YP_686110.1| - 6e-27 94.2 15.9 7.2e-27 93.9 11.0 1.0 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|147920127|ref|YP_686110.1| - 1.9e-07 30.9 15.9 2.4e-07 30.5 11.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) TctB PF07331.6 gi|147920127|ref|YP_686110.1| - 2 8.0 24.2 0.11 12.1 8.5 2.8 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family OPT PF03169.10 gi|147920129|ref|YP_686107.1| - 6.4e-23 81.0 69.2 1.2e-21 76.8 48.0 2.9 1 1 0 1 1 1 1 OPT oligopeptide transporter protein Fic_N PF13784.1 gi|147920130|ref|YP_686106.1| - 6.9e-29 99.5 0.1 1.3e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.13 gi|147920130|ref|YP_686106.1| - 1.8e-21 76.5 0.0 3.8e-21 75.5 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family OPT PF03169.10 gi|147920131|ref|YP_686105.1| - 1e-26 93.5 61.6 6.8e-26 90.8 42.7 1.9 1 1 0 1 1 1 1 OPT oligopeptide transporter protein E1-E2_ATPase PF00122.15 gi|147920132|ref|YP_686104.1| - 9e-62 208.1 1.8 9e-62 208.1 1.2 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147920132|ref|YP_686104.1| - 1.9e-50 172.2 3.3 3.8e-50 171.2 2.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|147920132|ref|YP_686104.1| - 2.7e-35 120.3 1.3 8.9e-18 64.1 0.2 2.6 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|147920132|ref|YP_686104.1| - 7.6e-14 52.3 0.0 2.6e-13 50.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|147920132|ref|YP_686104.1| - 7e-06 25.7 2.1 0.00073 19.1 0.3 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase PCP_red PF08369.5 gi|147920132|ref|YP_686104.1| - 0.007 16.2 0.0 0.021 14.6 0.0 1.8 1 0 0 1 1 1 1 Proto-chlorophyllide reductase 57 kD subunit CarboxypepD_reg PF13620.1 gi|147920132|ref|YP_686104.1| - 0.057 13.4 0.8 0.2 11.7 0.2 2.3 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain Hydrolase_6 PF13344.1 gi|147920132|ref|YP_686104.1| - 0.081 12.8 0.1 0.48 10.3 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Thioredox_DsbH PF03190.10 gi|147920134|ref|YP_686102.1| - 1.6e-68 229.5 0.0 3.4e-68 228.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|147920134|ref|YP_686102.1| - 5.6e-17 61.5 0.0 1.5e-16 60.1 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|147920134|ref|YP_686102.1| - 3.6e-08 32.8 0.1 0.084 11.8 0.0 4.0 2 1 1 4 4 4 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|147920134|ref|YP_686102.1| - 1.7e-06 27.3 0.1 0.015 14.3 0.2 2.5 1 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 DUF1680 PF07944.7 gi|147920134|ref|YP_686102.1| - 1.8e-06 26.5 0.7 7.1e-06 24.5 0.1 2.1 2 1 0 2 2 2 1 Putative glycosyl hydrolase of unknown function (DUF1680) Thioredoxin_2 PF13098.1 gi|147920134|ref|YP_686102.1| - 2.7e-05 24.3 0.0 7.6e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin-like domain Glyco_hydro_76 PF03663.9 gi|147920134|ref|YP_686102.1| - 0.00045 19.7 0.3 0.13 11.5 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolase family 76 Thioredoxin PF00085.15 gi|147920134|ref|YP_686102.1| - 0.0073 15.9 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin C5-epim_C PF06662.8 gi|147920134|ref|YP_686102.1| - 0.0098 15.1 0.7 2.7 7.2 0.1 3.5 2 1 1 3 3 3 1 D-glucuronyl C5-epimerase C-terminus LANC_like PF05147.8 gi|147920134|ref|YP_686102.1| - 0.075 11.5 0.0 4.2 5.8 0.0 2.9 3 0 0 3 3 3 0 Lanthionine synthetase C-like protein DHquinase_I PF01487.10 gi|147920135|ref|YP_686101.1| - 2.2e-53 181.1 0.0 2.6e-53 180.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Big_1 PF02369.11 gi|147920136|ref|YP_686100.1| - 2.7e-06 27.2 0.0 0.082 12.8 0.0 3.4 3 0 0 3 3 3 3 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|147920136|ref|YP_686100.1| - 3.1e-05 23.5 2.6 3.1 7.5 0.0 4.3 4 0 0 4 4 4 3 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.1 gi|147920136|ref|YP_686100.1| - 0.0012 18.8 0.2 6.4 6.9 0.0 3.5 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Pterin_bind PF00809.17 gi|147920137|ref|YP_686099.1| - 2.1e-10 40.3 0.4 7.7e-09 35.2 0.1 2.8 2 1 0 2 2 2 1 Pterin binding enzyme DUF4346 PF14251.1 gi|147920137|ref|YP_686099.1| - 3e-06 26.9 0.2 0.00016 21.3 0.1 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) CdhD PF03599.11 gi|147920137|ref|YP_686099.1| - 6.8e-06 24.8 0.4 0.00012 20.7 0.0 2.6 3 0 0 3 3 3 1 CO dehydrogenase/acetyl-CoA synthase delta subunit PEP_mutase PF13714.1 gi|147920137|ref|YP_686099.1| - 0.025 13.7 0.5 0.043 13.0 0.0 1.6 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase PHP PF02811.14 gi|147920138|ref|YP_686098.1| - 2.3e-19 69.8 0.1 2.7e-19 69.6 0.1 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|147920138|ref|YP_686098.1| - 9.9e-16 56.9 0.4 3.5e-15 55.2 0.2 2.0 2 0 0 2 2 2 1 PHP-associated HTH_AsnC-type PF13404.1 gi|147920139|ref|YP_686097.1| - 1.6e-10 40.3 0.0 2.4e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|147920139|ref|YP_686097.1| - 1.7e-10 40.4 0.3 2.7e-10 39.8 0.2 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|147920139|ref|YP_686097.1| - 3.1e-09 36.0 0.0 6e-09 35.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|147920139|ref|YP_686097.1| - 0.00039 19.9 0.0 0.00076 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|147920139|ref|YP_686097.1| - 0.0018 17.8 0.1 0.016 14.8 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|147920139|ref|YP_686097.1| - 0.0057 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|147920139|ref|YP_686097.1| - 0.025 14.1 0.1 0.3 10.6 0.0 2.2 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|147920139|ref|YP_686097.1| - 0.03 14.0 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|147920139|ref|YP_686097.1| - 0.047 13.6 0.0 0.2 11.6 0.0 2.1 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|147920139|ref|YP_686097.1| - 0.075 13.3 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|147920139|ref|YP_686097.1| - 0.077 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|147920139|ref|YP_686097.1| - 0.099 12.3 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|147920139|ref|YP_686097.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain OST3_OST6 PF04756.8 gi|147920140|ref|YP_686096.1| - 0.063 12.8 2.4 0.13 11.8 1.7 1.4 1 0 0 1 1 1 0 OST3 / OST6 family DUF202 PF02656.10 gi|147920140|ref|YP_686096.1| - 0.49 10.6 8.7 0.062 13.5 2.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Claudin_2 PF13903.1 gi|147920140|ref|YP_686096.1| - 0.57 9.8 4.2 1 9.0 2.9 1.5 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF4131 PF13567.1 gi|147920140|ref|YP_686096.1| - 7.3 5.9 7.0 3.6 6.9 3.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) TMEM238 PF15125.1 gi|147920140|ref|YP_686096.1| - 8.1 6.4 7.8 19 5.2 0.1 2.5 2 1 0 2 2 2 0 TMEM238 protein family Abi PF02517.11 gi|147920142|ref|YP_686094.1| - 5.2e-13 48.9 9.8 5.2e-13 48.9 6.8 3.0 3 0 0 3 3 3 1 CAAX protease self-immunity FixQ PF05545.6 gi|147920142|ref|YP_686094.1| - 0.08 12.5 0.0 0.08 12.5 0.0 3.0 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ MgtC PF02308.11 gi|147920142|ref|YP_686094.1| - 1.2 8.9 8.9 1.4 8.7 1.1 2.3 2 0 0 2 2 2 0 MgtC family MttA_Hcf106 PF02416.11 gi|147920143|ref|YP_686093.1| - 1.8e-16 58.9 0.2 2.8e-16 58.3 0.1 1.2 1 0 0 1 1 1 1 mttA/Hcf106 family zf-C2HC_2 PF13913.1 gi|147920145|ref|YP_686091.1| - 0.033 13.8 0.3 0.075 12.7 0.2 1.7 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Prim_Zn_Ribbon PF08273.7 gi|147920145|ref|YP_686091.1| - 0.24 11.5 4.3 0.33 11.0 3.0 1.3 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Ta0938 PF11494.3 gi|147920145|ref|YP_686091.1| - 0.41 10.7 2.3 0.61 10.2 1.4 1.3 1 1 0 1 1 1 0 Ta0938 DUF1192 PF06698.6 gi|147920145|ref|YP_686091.1| - 0.5 10.2 3.7 0.41 10.5 1.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) DUF1677 PF07911.8 gi|147920145|ref|YP_686091.1| - 1.7 8.9 5.8 3.9 7.7 4.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1677) HEAT_2 PF13646.1 gi|147920146|ref|YP_686090.1| - 1.4e-20 73.3 6.2 2.2e-08 34.2 0.1 2.6 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|147920146|ref|YP_686090.1| - 1.3e-08 34.1 0.2 0.012 15.6 0.0 3.3 4 0 0 4 4 4 2 HEAT repeat Arm PF00514.18 gi|147920146|ref|YP_686090.1| - 4.1e-08 32.7 0.0 0.016 15.0 0.0 4.1 3 1 1 4 4 4 3 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|147920146|ref|YP_686090.1| - 1.2e-06 28.7 0.1 0.18 12.3 0.0 3.6 4 0 0 4 4 4 2 HEAT-like repeat Lactonase PF10282.4 gi|147920147|ref|YP_686089.1| - 1.6e-05 24.1 0.0 0.0023 17.0 0.0 3.2 2 1 1 3 3 3 1 Lactonase, 7-bladed beta-propeller NHL PF01436.16 gi|147920147|ref|YP_686089.1| - 0.00099 18.9 5.2 0.26 11.2 0.0 4.5 5 1 0 5 5 5 2 NHL repeat SGL PF08450.7 gi|147920147|ref|YP_686089.1| - 0.0038 16.6 0.1 0.14 11.5 0.1 3.0 2 1 0 2 2 2 1 SMP-30/Gluconolaconase/LRE-like region PQQ PF01011.16 gi|147920147|ref|YP_686089.1| - 0.053 13.0 1.2 0.4 10.2 0.1 3.1 3 0 0 3 3 3 0 PQQ enzyme repeat PD40 PF07676.7 gi|147920147|ref|YP_686089.1| - 0.084 12.5 0.4 3.8 7.2 0.0 3.2 3 0 0 3 3 3 0 WD40-like Beta Propeller Repeat PQQ_3 PF13570.1 gi|147920147|ref|YP_686089.1| - 0.099 12.9 10.1 1.2 9.4 0.3 4.9 5 0 0 5 5 5 0 PQQ-like domain Cache_2 PF08269.6 gi|147920147|ref|YP_686089.1| - 0.14 12.1 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 Cache domain Acetyltransf_1 PF00583.19 gi|147920148|ref|YP_686088.1| - 7e-10 38.8 0.0 1.7e-09 37.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|147920148|ref|YP_686088.1| - 4.8e-09 36.1 0.0 9.1e-09 35.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147920148|ref|YP_686088.1| - 4.1e-07 30.0 0.0 7.1e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147920148|ref|YP_686088.1| - 9.4e-07 28.9 0.0 1.5e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147920148|ref|YP_686088.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|147920148|ref|YP_686088.1| - 0.07 13.0 0.0 0.14 12.0 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_alkylation PF08713.6 gi|147920149|ref|YP_686087.1| - 1.8e-30 106.0 0.2 2.3e-30 105.7 0.1 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_2 PF13646.1 gi|147920149|ref|YP_686087.1| - 0.00035 20.7 4.1 0.0078 16.4 0.1 2.2 1 1 1 2 2 2 2 HEAT repeats SpoIIAA-like PF11964.3 gi|147920149|ref|YP_686087.1| - 0.032 14.4 0.0 0.083 13.1 0.0 1.7 1 0 0 1 1 1 0 SpoIIAA-like TPP_enzyme_N PF02776.13 gi|147920150|ref|YP_686086.1| - 1.2e-48 164.9 1.2 4.8e-48 162.8 0.7 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|147920150|ref|YP_686086.1| - 2.8e-38 130.9 0.0 7.7e-38 129.4 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|147920150|ref|YP_686086.1| - 2.3e-27 95.4 0.1 7.6e-27 93.7 0.0 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|147920150|ref|YP_686086.1| - 0.02 14.3 0.6 0.035 13.6 0.4 1.3 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Terminase_1 PF03354.10 gi|147920151|ref|YP_686085.1| - 0.068 11.5 0.3 0.083 11.2 0.2 1.0 1 0 0 1 1 1 0 Phage Terminase HTH_42 PF06224.7 gi|147920152|ref|YP_686084.1| - 2.1e-53 181.7 11.5 2.5e-53 181.5 7.9 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rab5ip PF07019.7 gi|147920153|ref|YP_686083.1| - 0.0014 18.7 1.2 0.0022 18.0 0.7 1.5 1 1 0 1 1 1 1 Rab5-interacting protein (Rab5ip) DctQ PF04290.7 gi|147920153|ref|YP_686083.1| - 0.045 13.5 2.4 0.059 13.1 1.6 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Methyltransf_6 PF03737.10 gi|147920154|ref|YP_686082.1| - 1.4e-35 122.4 0.5 6.5e-35 120.2 0.2 2.1 2 0 0 2 2 2 1 Demethylmenaquinone methyltransferase OMPdecase PF00215.19 gi|147920154|ref|YP_686082.1| - 3.1e-18 66.0 7.2 9.9e-18 64.3 5.0 1.8 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family NMO PF03060.10 gi|147920154|ref|YP_686082.1| - 5.6e-06 25.7 3.4 8.3e-06 25.1 2.4 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.9 gi|147920154|ref|YP_686082.1| - 1.7e-05 23.8 3.4 4.8e-05 22.4 1.2 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase HMGL-like PF00682.14 gi|147920154|ref|YP_686082.1| - 4.3e-05 23.2 0.9 0.00016 21.4 0.6 1.9 1 1 0 1 1 1 1 HMGL-like His_biosynth PF00977.16 gi|147920154|ref|YP_686082.1| - 0.0002 20.6 1.0 0.00065 19.0 0.1 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|147920154|ref|YP_686082.1| - 0.0038 16.3 5.2 0.0062 15.6 2.7 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.12 gi|147920154|ref|YP_686082.1| - 0.013 14.6 7.7 0.051 12.7 1.2 2.9 2 1 1 3 3 3 0 Thiamine monophosphate synthase/TENI Dus PF01207.12 gi|147920154|ref|YP_686082.1| - 0.058 12.2 0.1 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) DeoC PF01791.4 gi|147920154|ref|YP_686082.1| - 0.067 12.4 6.2 0.87 8.8 3.1 2.6 1 1 1 2 2 2 0 DeoC/LacD family aldolase DUF561 PF04481.7 gi|147920154|ref|YP_686082.1| - 0.11 11.4 0.3 0.26 10.1 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF561) FMN_dh PF01070.13 gi|147920154|ref|YP_686082.1| - 0.19 10.5 10.7 0.1 11.4 5.4 1.9 1 1 1 2 2 2 0 FMN-dependent dehydrogenase PcrB PF01884.12 gi|147920154|ref|YP_686082.1| - 0.25 10.5 6.0 0.26 10.5 0.5 3.1 3 1 1 4 4 4 0 PcrB family FliX PF10768.4 gi|147920154|ref|YP_686082.1| - 0.43 10.7 3.9 0.34 11.1 1.0 2.1 2 0 0 2 2 2 0 Class II flagellar assembly regulator DUF1616 PF07760.6 gi|147920155|ref|YP_686081.1| - 5.1e-106 354.0 1.2 5.7e-106 353.8 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|147920156|ref|YP_686080.1| - 0.1 12.0 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF58 PF01882.13 gi|147920157|ref|YP_686079.1| - 1.5e-19 69.8 0.0 3.1e-19 68.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|147920158|ref|YP_686078.1| - 3.1e-59 198.2 0.1 5e-59 197.6 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|147920158|ref|YP_686078.1| - 7.3e-14 51.6 0.0 2e-13 50.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|147920158|ref|YP_686078.1| - 5.3e-08 32.0 0.0 7.4e-07 28.2 0.0 2.1 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|147920158|ref|YP_686078.1| - 3.4e-05 24.0 0.0 7.7e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|147920158|ref|YP_686078.1| - 4.2e-05 22.7 0.3 0.23 10.6 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|147920158|ref|YP_686078.1| - 4.9e-05 22.5 0.5 0.00035 19.6 0.1 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|147920158|ref|YP_686078.1| - 0.00022 20.7 0.0 0.002 17.6 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|147920158|ref|YP_686078.1| - 0.15 12.2 0.1 11 6.1 0.0 3.2 2 2 1 3 3 3 0 AAA domain DUF4350 PF14258.1 gi|147920159|ref|YP_686077.1| - 5.5e-06 26.4 0.0 1.8e-05 24.8 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|147920159|ref|YP_686077.1| - 0.00013 21.5 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4129 PF13559.1 gi|147920160|ref|YP_686076.1| - 4.6e-07 29.7 0.0 1.1e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|147920160|ref|YP_686076.1| - 4.6e-07 29.7 18.1 0.00036 20.5 0.4 4.6 4 0 0 4 4 4 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|147920160|ref|YP_686076.1| - 0.00027 20.8 6.2 0.061 13.2 0.1 3.9 4 0 0 4 4 4 2 Bacterial Ig-like domain (group 1) DUF4480 PF13715.1 gi|147920160|ref|YP_686076.1| - 0.013 15.5 0.3 3.9 7.5 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4480) Dioxygenase_C PF00775.16 gi|147920160|ref|YP_686076.1| - 0.026 13.8 1.3 36 3.5 0.0 4.7 5 1 0 5 5 5 0 Dioxygenase DUF11 PF01345.13 gi|147920160|ref|YP_686076.1| - 0.11 12.5 2.8 11 6.1 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function DUF11 DUF3325 PF11804.3 gi|147920161|ref|YP_686075.1| - 0.1 12.5 3.5 0.18 11.7 2.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) DUF485 PF04341.7 gi|147920161|ref|YP_686075.1| - 0.15 11.7 3.3 0.27 10.9 2.3 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF485 MHYT PF03707.11 gi|147920161|ref|YP_686075.1| - 0.51 10.4 3.0 5.5 7.1 0.2 2.4 2 1 0 2 2 2 0 Bacterial signalling protein N terminal repeat DUF4282 PF14110.1 gi|147920161|ref|YP_686075.1| - 0.92 9.7 7.2 1.7 8.8 5.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) O-antigen_lig PF13425.1 gi|147920161|ref|YP_686075.1| - 1.7 8.6 9.3 2 8.3 6.5 1.2 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DDE_Tnp_1 PF01609.16 gi|147920162|ref|YP_686074.1| - 1.6e-16 60.4 0.1 2.5e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147920162|ref|YP_686074.1| - 7e-13 48.2 0.1 2e-12 46.8 0.1 1.8 1 1 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147920162|ref|YP_686074.1| - 3.8e-05 23.4 0.0 7.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147920162|ref|YP_686074.1| - 0.022 14.7 0.5 0.043 13.8 0.3 1.5 1 0 0 1 1 1 0 Transposase DDE domain T6SS_Vgr PF13296.1 gi|147920163|ref|YP_686073.1| - 0.22 11.3 4.2 0.25 11.2 2.9 1.2 1 0 0 1 1 1 0 Putative type VI secretion system Rhs element Vgr PqqD PF05402.7 gi|147920164|ref|YP_686072.1| - 0.015 15.2 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) DDE_Tnp_IS1 PF03400.8 gi|147920166|ref|YP_686070.1| - 0.05 13.7 0.1 0.21 11.6 0.0 1.9 1 1 0 2 2 2 0 IS1 transposase DUF4459 PF14673.1 gi|147920166|ref|YP_686070.1| - 0.075 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4459) zf-C2HC_2 PF13913.1 gi|147920167|ref|YP_686069.1| - 0.019 14.6 2.4 0.046 13.3 1.7 1.7 1 0 0 1 1 1 0 zinc-finger of a C2HC-type PAR1 PF06521.6 gi|147920167|ref|YP_686069.1| - 0.026 14.0 0.4 0.04 13.4 0.2 1.2 1 0 0 1 1 1 0 PAR1 protein Zn_Tnp_IS1 PF03811.8 gi|147920167|ref|YP_686069.1| - 0.028 13.8 11.1 0.086 12.3 6.2 2.7 2 1 0 2 2 2 0 InsA N-terminal domain Evr1_Alr PF04777.8 gi|147920167|ref|YP_686069.1| - 0.033 14.0 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 Erv1 / Alr family zf-AN1 PF01428.11 gi|147920167|ref|YP_686069.1| - 0.04 13.8 1.8 0.04 13.8 1.3 1.8 2 0 0 2 2 2 0 AN1-like Zinc finger DUF977 PF06163.6 gi|147920167|ref|YP_686069.1| - 0.04 13.6 0.1 0.055 13.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Copper-fist PF00649.13 gi|147920167|ref|YP_686069.1| - 0.077 12.2 1.5 0.28 10.4 1.0 2.0 1 0 0 1 1 1 0 Copper fist DNA binding domain IBR PF01485.16 gi|147920167|ref|YP_686069.1| - 0.25 11.2 4.1 0.47 10.3 2.8 1.4 1 0 0 1 1 1 0 IBR domain C1_4 PF07975.7 gi|147920167|ref|YP_686069.1| - 0.45 10.5 4.1 0.97 9.4 2.8 1.6 1 1 0 1 1 1 0 TFIIH C1-like domain Acyl_transf_3 PF01757.17 gi|147920168|ref|YP_686068.1| - 2.1e-27 95.8 48.4 1.1e-26 93.4 33.5 1.9 1 1 0 1 1 1 1 Acyltransferase family DUF418 PF04235.7 gi|147920168|ref|YP_686068.1| - 1.1 8.9 21.8 0.11 12.1 11.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF418) DDE_Tnp_1 PF01609.16 gi|147920169|ref|YP_686912.1| - 1.5e-16 60.6 0.1 2.3e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147920169|ref|YP_686912.1| - 6.6e-13 48.3 0.1 1.9e-12 46.8 0.1 1.8 1 1 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147920169|ref|YP_686912.1| - 3.6e-05 23.5 0.0 7.1e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147920169|ref|YP_686912.1| - 0.021 14.8 0.5 0.041 13.8 0.3 1.5 1 0 0 1 1 1 0 Transposase DDE domain PS_pyruv_trans PF04230.8 gi|147920170|ref|YP_686065.1| - 3.1e-12 46.7 0.1 3.4e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase Polysacc_synt_3 PF13440.1 gi|147920171|ref|YP_686064.1| - 1e-09 38.2 26.6 1e-09 38.2 18.4 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|147920171|ref|YP_686064.1| - 1.5e-09 37.5 35.4 1.5e-09 37.5 24.5 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein FrhB_FdhB_C PF04432.8 gi|147920172|ref|YP_686063.1| - 2.6e-33 114.7 0.0 4e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|147920172|ref|YP_686063.1| - 2.7e-20 72.0 0.0 4.7e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term DDE_Tnp_1 PF01609.16 gi|147920173|ref|YP_686062.1| - 3.1e-13 49.7 0.6 2.2e-12 47.0 0.4 2.2 1 1 0 1 1 1 1 Transposase DDE domain ECM1 PF05782.6 gi|147920173|ref|YP_686062.1| - 0.14 10.8 0.1 0.24 10.0 0.1 1.3 1 0 0 1 1 1 0 Extracellular matrix protein 1 (ECM1) Polysacc_synt PF01943.12 gi|147920176|ref|YP_686059.1| - 3.3e-20 72.4 37.4 3.3e-20 72.4 25.9 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|147920176|ref|YP_686059.1| - 1.9e-11 43.9 17.7 1.9e-11 43.9 12.3 3.1 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|147920176|ref|YP_686059.1| - 0.00013 21.8 13.4 0.00013 21.8 9.3 4.9 3 1 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|147920176|ref|YP_686059.1| - 2.1 6.6 46.4 0.012 14.0 2.6 3.1 1 1 1 2 2 2 0 MviN-like protein Flexi_CP_N PF08358.5 gi|147920177|ref|YP_686058.1| - 0.05 13.3 0.1 0.49 10.2 0.0 2.1 2 0 0 2 2 2 0 Carlavirus coat DUF2206 PF09971.4 gi|147920178|ref|YP_686057.1| - 5.3e-126 420.3 37.6 5.3e-126 420.3 26.0 3.1 3 0 0 3 3 3 1 Predicted membrane protein (DUF2206) DUF1616 PF07760.6 gi|147920178|ref|YP_686057.1| - 5.6e-51 173.3 29.6 5.6e-51 173.3 20.5 3.1 2 1 1 3 3 3 1 Protein of unknown function (DUF1616) PMT_2 PF13231.1 gi|147920178|ref|YP_686057.1| - 6.4e-05 22.9 18.6 6.4e-05 22.9 12.9 4.9 3 2 2 5 5 5 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.15 gi|147920179|ref|YP_686056.1| - 1.2e-32 112.7 0.4 2.3e-32 111.7 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147920179|ref|YP_686056.1| - 5.1e-17 62.2 0.0 8.9e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147920179|ref|YP_686056.1| - 7.4e-08 32.3 1.0 1.8e-07 31.1 0.7 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|147920179|ref|YP_686056.1| - 4.5e-07 29.7 0.0 7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|147920179|ref|YP_686056.1| - 1.3e-06 28.5 0.0 3.2e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147920179|ref|YP_686056.1| - 2.9e-05 24.2 0.0 4.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|147920180|ref|YP_686055.1| - 0.00072 19.3 0.0 0.0024 17.6 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|147920180|ref|YP_686055.1| - 0.031 13.6 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|147920181|ref|YP_686054.1| - 5.8e-21 74.6 0.2 7.8e-21 74.2 0.2 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147920181|ref|YP_686054.1| - 1.5e-16 60.8 0.0 1.9e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|147920181|ref|YP_686054.1| - 1.2e-07 31.8 0.0 1.7e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 DDE_Tnp_ISL3 PF01610.12 gi|147920182|ref|YP_685883.1| - 3.3e-66 223.4 1.2 4.5e-66 222.9 0.8 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|147920182|ref|YP_685883.1| - 1.6e-14 52.7 0.0 4.3e-14 51.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.1 gi|147920182|ref|YP_685883.1| - 0.00011 22.1 9.8 0.00034 20.5 6.8 1.8 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|147920182|ref|YP_685883.1| - 0.017 14.6 0.0 0.017 14.6 0.0 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF746 PF05344.6 gi|147920182|ref|YP_685883.1| - 0.12 11.9 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) Glyco_trans_4_2 PF13477.1 gi|147920183|ref|YP_686052.1| - 3.2e-06 27.0 0.3 1.9e-05 24.5 0.2 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|147920184|ref|YP_686051.1| - 6e-23 81.3 0.0 8.2e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147920184|ref|YP_686051.1| - 1.6e-11 44.4 0.1 2.2e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|147920184|ref|YP_686051.1| - 0.002 18.4 0.0 0.0035 17.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|147920184|ref|YP_686051.1| - 0.045 13.8 0.0 0.065 13.3 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain PGM_PMM_II PF02879.11 gi|147920184|ref|YP_686051.1| - 0.13 12.5 0.2 1.1 9.6 0.0 2.3 2 1 0 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ParBc PF02195.13 gi|147920185|ref|YP_686050.1| - 3.2e-13 49.5 0.1 7.6e-13 48.3 0.1 1.7 1 0 0 1 1 1 1 ParB-like nuclease domain Myb_DNA-bind_6 PF13921.1 gi|147920185|ref|YP_686050.1| - 0.00038 20.4 0.1 0.0032 17.5 0.0 2.5 2 1 0 2 2 2 1 Myb-like DNA-binding domain DUF262 PF03235.9 gi|147920185|ref|YP_686050.1| - 0.0011 18.9 0.9 0.0024 17.8 0.7 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF262 Cm_res_leader PF08077.6 gi|147920188|ref|YP_686046.1| - 4.6 7.1 6.8 19 5.2 0.2 2.7 2 1 0 2 2 2 0 Chloramphenicol resistance gene leader peptide DUF2975 PF11188.3 gi|147920190|ref|YP_686044.1| - 0.095 12.4 0.4 0.14 11.8 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) DUF457 PF04307.9 gi|147920190|ref|YP_686044.1| - 0.096 12.0 3.6 0.19 11.0 2.5 1.5 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Phageshock_PspG PF09583.5 gi|147920190|ref|YP_686044.1| - 0.92 9.6 6.3 0.16 12.0 1.0 1.9 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) BTP PF05232.7 gi|147920190|ref|YP_686044.1| - 3 7.6 5.9 0.7 9.6 1.6 1.7 2 0 0 2 2 2 0 Bacterial Transmembrane Pair family DUF457 PF04307.9 gi|147920191|ref|YP_686043.1| - 6.7e-18 64.5 7.6 8.2e-18 64.2 5.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) TraX PF05857.6 gi|147920191|ref|YP_686043.1| - 0.014 15.0 2.9 0.031 13.9 2.0 1.7 1 1 0 1 1 1 0 TraX protein CAAD PF14159.1 gi|147920191|ref|YP_686043.1| - 8.1 6.1 6.8 3.1 7.4 0.1 2.9 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase NTP_transf_2 PF01909.18 gi|147920192|ref|YP_686042.1| - 2.4e-11 43.8 0.1 2.9e-11 43.5 0.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|147920192|ref|YP_686042.1| - 0.014 14.9 0.0 0.018 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 BolA PF01722.13 gi|147920192|ref|YP_686042.1| - 0.043 13.7 0.0 0.087 12.7 0.0 1.6 2 0 0 2 2 2 0 BolA-like protein HEPN PF05168.9 gi|147920193|ref|YP_686041.1| - 3.5e-28 97.8 0.2 4.3e-28 97.5 0.1 1.0 1 0 0 1 1 1 1 HEPN domain DNA_pol_B_exo1 PF03104.14 gi|147920193|ref|YP_686041.1| - 0.0025 16.7 0.0 0.0032 16.3 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Epimerase PF01370.16 gi|147920194|ref|YP_686040.1| - 3.9e-64 216.3 0.0 4.9e-64 216.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|147920194|ref|YP_686040.1| - 1.3e-24 86.4 0.0 1.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|147920194|ref|YP_686040.1| - 3.1e-21 75.5 0.0 3e-20 72.2 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|147920194|ref|YP_686040.1| - 1.1e-19 70.4 0.0 1.7e-19 69.8 0.0 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|147920194|ref|YP_686040.1| - 2e-16 60.5 0.0 2.9e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|147920194|ref|YP_686040.1| - 7.9e-15 54.4 0.1 4.7e-13 48.6 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|147920194|ref|YP_686040.1| - 1.2e-08 35.0 0.8 3.6e-08 33.4 0.6 1.8 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|147920194|ref|YP_686040.1| - 2.7e-08 33.3 0.0 1.7e-07 30.7 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|147920194|ref|YP_686040.1| - 3.6e-07 30.0 1.4 5.7e-06 26.1 1.0 2.3 1 1 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|147920194|ref|YP_686040.1| - 2.8e-05 23.9 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit TrkA_N PF02254.13 gi|147920194|ref|YP_686040.1| - 0.004 17.1 0.1 0.0096 15.9 0.1 1.7 2 0 0 2 2 2 1 TrkA-N domain ELFV_dehydrog PF00208.16 gi|147920194|ref|YP_686040.1| - 0.018 14.6 0.1 0.034 13.7 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sec62 PF03839.11 gi|147920195|ref|YP_686039.1| - 0.015 14.7 0.3 0.017 14.5 0.2 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 Mnd1 PF03962.10 gi|147920195|ref|YP_686039.1| - 0.071 12.7 1.4 0.081 12.5 1.0 1.1 1 0 0 1 1 1 0 Mnd1 family ARL2_Bind_BART PF11527.3 gi|147920195|ref|YP_686039.1| - 0.11 12.3 0.1 0.14 11.9 0.1 1.1 1 0 0 1 1 1 0 The ARF-like 2 binding protein BART DUF3895 PF13034.1 gi|147920195|ref|YP_686039.1| - 0.12 11.8 0.6 0.18 11.3 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3895) DUF1814 PF08843.6 gi|147920196|ref|YP_686038.1| - 9e-29 100.9 0.3 1.1e-28 100.6 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF1814) DUF2204 PF09970.4 gi|147920196|ref|YP_686038.1| - 0.03 13.8 0.2 0.073 12.5 0.0 1.7 2 0 0 2 2 2 0 Nucleotidyl transferase of unknown function (DUF2204) DUF4095 PF13338.1 gi|147920197|ref|YP_686037.1| - 1.9e-15 57.1 0.0 3.3e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4095) HTH_36 PF13730.1 gi|147920197|ref|YP_686037.1| - 0.047 13.8 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|147920197|ref|YP_686037.1| - 0.17 12.3 0.0 0.36 11.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal DUF308 PF03729.8 gi|147920198|ref|YP_686036.1| - 1.1 9.2 7.2 6.2 6.8 0.2 2.4 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF1180 PF06679.7 gi|147920199|ref|YP_686034.1| - 0.079 12.8 3.9 1.4 8.7 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1180) NTP_transferase PF00483.18 gi|147920201|ref|YP_686032.1| - 1.1e-41 142.7 0.0 1.4e-41 142.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|147920201|ref|YP_686032.1| - 5.4e-19 66.7 30.1 4.4e-09 35.4 2.2 4.8 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|147920201|ref|YP_686032.1| - 1.8e-12 47.6 0.0 2.4e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|147920201|ref|YP_686032.1| - 9.1e-07 28.3 19.4 5.1e-05 22.7 4.4 5.1 4 1 3 7 7 7 6 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|147920201|ref|YP_686032.1| - 0.00062 19.3 0.0 0.00097 18.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|147920201|ref|YP_686032.1| - 0.12 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 PGM_PMM_I PF02878.11 gi|147920202|ref|YP_686031.1| - 3.3e-38 130.2 0.0 7.6e-38 129.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|147920202|ref|YP_686031.1| - 7.3e-27 93.7 0.2 1.8e-26 92.4 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|147920202|ref|YP_686031.1| - 2.7e-18 66.0 0.0 1.3e-17 63.8 0.0 2.1 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|147920202|ref|YP_686031.1| - 5.5e-11 42.3 0.0 1.4e-10 41.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain SIS PF01380.17 gi|147920203|ref|YP_686030.1| - 1.7e-54 182.9 4.4 1.1e-30 105.9 0.8 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|147920203|ref|YP_686030.1| - 5.9e-28 97.4 0.1 2.4e-27 95.4 0.0 2.0 2 1 1 3 3 3 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|147920203|ref|YP_686030.1| - 3.7e-25 88.0 0.0 7.4e-25 87.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|147920203|ref|YP_686030.1| - 6e-24 84.4 1.6 1.7e-18 66.4 0.1 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|147920203|ref|YP_686030.1| - 6.6e-06 25.0 0.0 1e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|147920203|ref|YP_686030.1| - 0.018 14.7 1.5 0.15 11.7 0.0 2.6 2 0 0 2 2 2 0 SIS domain NTP_transferase PF00483.18 gi|147920204|ref|YP_686029.1| - 2.2e-46 158.1 0.3 2.6e-46 157.9 0.2 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|147920204|ref|YP_686029.1| - 1e-18 65.9 21.8 6.1e-07 28.6 0.1 5.3 3 1 1 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|147920204|ref|YP_686029.1| - 1.2e-15 57.9 0.0 1.6e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|147920204|ref|YP_686029.1| - 7.6e-11 41.3 8.5 2.2e-07 30.3 1.9 4.4 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|147920204|ref|YP_686029.1| - 3.5e-06 26.7 0.3 2.2e-05 24.0 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|147920204|ref|YP_686029.1| - 0.0045 16.6 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_4 PF13562.1 gi|147920204|ref|YP_686029.1| - 0.019 14.6 0.0 0.14 11.8 0.0 2.1 1 1 0 1 1 1 0 Sugar nucleotidyl transferase Glyco_tranf_2_3 PF13641.1 gi|147920204|ref|YP_686029.1| - 0.14 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Ribosomal_L40e PF01020.12 gi|147920205|ref|YP_686028.1| - 2.7e-06 26.8 6.3 3.1e-06 26.6 4.4 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|147920205|ref|YP_686028.1| - 0.0021 17.8 1.2 0.0023 17.6 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|147920205|ref|YP_686028.1| - 0.0027 17.1 1.1 0.0039 16.6 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|147920205|ref|YP_686028.1| - 0.0035 16.7 4.4 0.0055 16.1 3.1 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|147920205|ref|YP_686028.1| - 0.006 15.6 2.8 0.0089 15.1 2.0 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-DHHC PF01529.15 gi|147920205|ref|YP_686028.1| - 0.019 14.4 0.5 0.021 14.2 0.4 1.0 1 0 0 1 1 1 0 DHHC palmitoyltransferase DnaJ_CXXCXGXG PF00684.14 gi|147920205|ref|YP_686028.1| - 0.045 13.7 0.7 0.053 13.5 0.5 1.3 1 0 0 1 1 1 0 DnaJ central domain DUF35_N PF12172.3 gi|147920205|ref|YP_686028.1| - 0.055 13.3 1.3 0.055 13.3 0.9 2.1 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|147920205|ref|YP_686028.1| - 0.071 12.3 0.4 0.11 11.7 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|147920205|ref|YP_686028.1| - 0.075 12.7 1.2 0.66 9.7 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FYVE PF01363.16 gi|147920205|ref|YP_686028.1| - 0.15 11.9 2.6 0.19 11.6 1.8 1.2 1 0 0 1 1 1 0 FYVE zinc finger HypA PF01155.14 gi|147920205|ref|YP_686028.1| - 0.22 11.2 1.1 0.24 11.0 0.8 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|147920205|ref|YP_686028.1| - 0.38 10.4 7.8 20 5.0 5.4 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit HTH_3 PF01381.17 gi|147920208|ref|YP_686025.1| - 1.2e-12 47.4 1.5 2.3e-12 46.5 0.4 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|147920208|ref|YP_686025.1| - 3.5e-10 39.7 0.7 3.4e-09 36.6 0.1 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|147920208|ref|YP_686025.1| - 7.5e-09 35.6 0.0 3.1e-08 33.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|147920208|ref|YP_686025.1| - 0.00015 21.3 0.1 0.0003 20.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|147920208|ref|YP_686025.1| - 0.0018 17.9 0.0 0.0041 16.7 0.0 1.6 1 0 0 1 1 1 1 MarR family NUMOD1 PF07453.8 gi|147920208|ref|YP_686025.1| - 0.0033 17.2 0.0 0.0084 15.9 0.0 1.7 1 0 0 1 1 1 1 NUMOD1 domain HTH_25 PF13413.1 gi|147920208|ref|YP_686025.1| - 0.0036 16.8 0.2 0.0088 15.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|147920208|ref|YP_686025.1| - 0.0064 16.6 0.1 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_23 PF13384.1 gi|147920208|ref|YP_686025.1| - 0.025 14.2 0.0 0.078 12.6 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|147920208|ref|YP_686025.1| - 0.038 13.5 0.1 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_24 PF13412.1 gi|147920208|ref|YP_686025.1| - 0.069 12.5 0.1 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|147920208|ref|YP_686025.1| - 0.12 11.9 0.1 0.34 10.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|147920208|ref|YP_686025.1| - 0.12 12.1 0.1 0.72 9.6 0.0 2.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein DUF1743 PF08489.6 gi|147920209|ref|YP_686024.1| - 4.7e-43 145.6 0.0 2.5e-42 143.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|147920209|ref|YP_686024.1| - 4.1e-09 36.1 0.0 1.3e-08 34.5 0.1 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|147920209|ref|YP_686024.1| - 8.5e-05 22.3 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain RNA_POL_M_15KD PF02150.11 gi|147920209|ref|YP_686024.1| - 0.00084 18.9 1.0 0.0022 17.6 0.7 1.7 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|147920209|ref|YP_686024.1| - 0.0071 15.9 1.1 0.014 15.0 0.3 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|147920209|ref|YP_686024.1| - 0.019 14.7 1.9 0.045 13.5 1.3 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain BOF PF04076.8 gi|147920209|ref|YP_686024.1| - 0.024 14.4 0.1 0.051 13.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein C1_1 PF00130.17 gi|147920209|ref|YP_686024.1| - 0.054 13.2 1.1 0.11 12.2 0.8 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|147920209|ref|YP_686024.1| - 0.098 12.4 1.0 0.21 11.4 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|147920209|ref|YP_686024.1| - 0.1 12.4 1.5 0.22 11.3 1.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon Rep_fac-A_C PF08646.5 gi|147920209|ref|YP_686024.1| - 0.14 11.8 0.1 0.43 10.2 0.1 1.7 2 0 0 2 2 2 0 Replication factor-A C terminal domain Zn-ribbon_8 PF09723.5 gi|147920209|ref|YP_686024.1| - 0.39 10.7 2.5 8.6 6.4 0.0 2.7 3 0 0 3 3 2 0 Zinc ribbon domain CBS PF00571.23 gi|147920212|ref|YP_686021.1| - 6.1e-47 157.1 14.7 1.4e-15 56.7 0.3 4.1 4 0 0 4 4 4 4 CBS domain GAF_2 PF13185.1 gi|147920212|ref|YP_686021.1| - 0.079 13.4 0.1 0.42 11.0 0.1 2.0 1 1 1 2 2 2 0 GAF domain Usp PF00582.21 gi|147920213|ref|YP_686020.1| - 6.2e-36 123.6 0.2 7.1e-36 123.4 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|147920213|ref|YP_686020.1| - 0.0055 16.4 0.0 0.012 15.3 0.0 1.5 1 1 0 1 1 1 1 DNA photolyase DXP_reductoisom PF02670.11 gi|147920213|ref|YP_686020.1| - 0.0067 16.9 0.2 0.011 16.2 0.1 1.5 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Bac_thur_toxin PF01338.13 gi|147920213|ref|YP_686020.1| - 0.068 12.3 0.1 0.086 12.0 0.1 1.1 1 0 0 1 1 1 0 Bacillus thuringiensis toxin SRP54 PF00448.17 gi|147920213|ref|YP_686020.1| - 0.071 12.5 0.1 0.75 9.1 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Amidohydro_1 PF01979.15 gi|147920214|ref|YP_686019.1| - 5.9e-29 101.7 0.3 3.4e-28 99.2 0.2 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|147920214|ref|YP_686019.1| - 6.9e-16 59.0 9.3 2.7e-15 57.1 6.4 1.9 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|147920214|ref|YP_686019.1| - 3.5e-09 36.0 0.0 7.4e-09 34.9 0.0 1.4 1 1 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|147920214|ref|YP_686019.1| - 1.7e-08 34.1 6.5 1.6e-07 30.8 1.8 2.6 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|147920214|ref|YP_686019.1| - 9.1e-06 25.4 0.0 1.9e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Sec61_beta PF03911.11 gi|147920216|ref|YP_686017.1| - 2.3e-12 46.4 0.1 3.1e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family HEPN PF05168.9 gi|147920217|ref|YP_686016.1| - 5.1e-08 32.8 0.3 5.6e-08 32.6 0.2 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|147920218|ref|YP_686015.1| - 2.1e-08 34.3 0.4 4.6e-08 33.2 0.2 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|147920218|ref|YP_686015.1| - 7e-07 28.8 0.0 1.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|147920218|ref|YP_686015.1| - 0.00013 21.8 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|147920218|ref|YP_686015.1| - 0.00078 19.0 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|147920218|ref|YP_686015.1| - 0.002 17.7 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|147920218|ref|YP_686015.1| - 0.0021 18.3 0.0 0.0041 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|147920218|ref|YP_686015.1| - 0.0026 17.1 0.0 0.011 15.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.1 gi|147920218|ref|YP_686015.1| - 0.003 17.5 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|147920218|ref|YP_686015.1| - 0.0089 16.1 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.15 gi|147920218|ref|YP_686015.1| - 0.0095 16.0 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|147920218|ref|YP_686015.1| - 0.0096 15.6 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|147920218|ref|YP_686015.1| - 0.024 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|147920218|ref|YP_686015.1| - 0.026 14.0 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|147920218|ref|YP_686015.1| - 0.035 13.5 0.0 0.067 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|147920218|ref|YP_686015.1| - 0.041 13.4 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|147920218|ref|YP_686015.1| - 0.052 13.2 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|147920218|ref|YP_686015.1| - 0.065 12.7 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|147920218|ref|YP_686015.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.7 gi|147920218|ref|YP_686015.1| - 0.11 11.9 0.1 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 MMR_HSR1 PF01926.18 gi|147920219|ref|YP_686014.1| - 3e-15 56.1 0.0 4.3e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|147920219|ref|YP_686014.1| - 1e-10 41.1 0.3 1.4e-09 37.3 0.2 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|147920219|ref|YP_686014.1| - 9.1e-05 21.9 0.1 0.096 12.1 0.0 2.2 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|147920219|ref|YP_686014.1| - 0.0012 18.5 0.5 0.0026 17.4 0.0 1.7 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.18 gi|147920219|ref|YP_686014.1| - 0.0031 17.3 0.1 0.062 13.1 0.1 2.1 1 1 1 2 2 2 1 Dynamin family Ras PF00071.17 gi|147920219|ref|YP_686014.1| - 0.0049 16.2 0.2 0.019 14.3 0.2 1.9 1 1 0 1 1 1 1 Ras family DUF258 PF03193.11 gi|147920219|ref|YP_686014.1| - 0.0091 15.1 0.0 0.017 14.2 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|147920219|ref|YP_686014.1| - 0.023 15.4 0.3 0.059 14.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|147920219|ref|YP_686014.1| - 0.048 13.9 0.0 0.089 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|147920219|ref|YP_686014.1| - 0.11 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|147920219|ref|YP_686014.1| - 0.12 11.3 0.0 0.25 10.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Arf PF00025.16 gi|147920219|ref|YP_686014.1| - 0.14 11.4 0.1 0.31 10.2 0.1 1.9 1 1 0 1 1 1 0 ADP-ribosylation factor family HTH_24 PF13412.1 gi|147920221|ref|YP_686012.1| - 6.9e-18 63.7 0.3 2.3e-09 36.5 0.2 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920221|ref|YP_686012.1| - 8.1e-09 35.1 0.0 0.00056 19.6 0.0 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|147920221|ref|YP_686012.1| - 8.6e-09 34.9 0.1 2.5e-05 23.8 0.0 2.7 3 0 0 3 3 3 2 MarR family MarR PF01047.17 gi|147920221|ref|YP_686012.1| - 1.8e-07 30.7 0.0 0.00036 20.1 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|147920221|ref|YP_686012.1| - 1.5e-05 24.5 0.0 0.00059 19.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|147920221|ref|YP_686012.1| - 3.8e-05 23.3 0.1 0.0013 18.3 0.0 2.5 1 1 2 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|147920221|ref|YP_686012.1| - 0.00064 19.6 0.0 0.024 14.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain EAP30 PF04157.11 gi|147920221|ref|YP_686012.1| - 0.00083 18.5 0.0 0.093 11.8 0.0 2.1 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_11 PF08279.7 gi|147920221|ref|YP_686012.1| - 0.00083 18.9 0.1 0.26 10.9 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_Tnp_IS630 PF01710.11 gi|147920221|ref|YP_686012.1| - 0.00084 19.0 0.0 0.31 10.7 0.0 2.2 2 0 0 2 2 2 1 Transposase FaeA PF04703.7 gi|147920221|ref|YP_686012.1| - 0.0018 18.4 0.8 0.14 12.3 0.0 2.4 2 0 0 2 2 2 1 FaeA-like protein HTH_IclR PF09339.5 gi|147920221|ref|YP_686012.1| - 0.0029 17.1 0.0 0.034 13.7 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|147920221|ref|YP_686012.1| - 0.0029 17.8 0.0 0.66 10.3 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|147920221|ref|YP_686012.1| - 0.0076 15.6 0.1 1.4 8.4 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 FeoC PF09012.5 gi|147920221|ref|YP_686012.1| - 0.014 15.1 0.0 0.084 12.5 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_40 PF14493.1 gi|147920221|ref|YP_686012.1| - 0.015 15.5 0.2 0.74 10.0 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|147920221|ref|YP_686012.1| - 0.015 15.2 0.2 4.4 7.4 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain RPA_C PF08784.6 gi|147920221|ref|YP_686012.1| - 0.06 13.7 0.1 9.6 6.6 0.0 2.4 2 0 0 2 2 2 0 Replication protein A C terminal LexA_DNA_bind PF01726.11 gi|147920221|ref|YP_686012.1| - 0.068 12.7 0.1 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain GerE PF00196.14 gi|147920221|ref|YP_686012.1| - 0.072 12.4 0.0 0.92 8.8 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family CarboxypepD_reg PF13620.1 gi|147920222|ref|YP_686011.1| - 3.4e-05 23.7 0.0 0.0087 16.0 0.0 3.1 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920222|ref|YP_686011.1| - 0.00012 21.9 0.2 0.00085 19.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Sigma_reg_N PF13800.1 gi|147920222|ref|YP_686011.1| - 0.029 14.4 0.8 0.048 13.6 0.6 1.3 1 0 0 1 1 1 0 Sigma factor regulator N-terminal phage_tail_N PF08400.5 gi|147920222|ref|YP_686011.1| - 0.029 14.0 0.7 0.64 9.7 0.0 2.9 3 1 0 3 3 3 0 Prophage tail fibre N-terminal Cna_B PF05738.8 gi|147920222|ref|YP_686011.1| - 0.095 12.4 2.3 0.43 10.3 0.4 2.7 2 0 0 2 2 2 0 Cna protein B-type domain ABC2_membrane_3 PF12698.2 gi|147920222|ref|YP_686011.1| - 1.5 7.7 5.4 1.7 7.5 3.7 1.2 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920223|ref|YP_686010.1| - 2.3e-12 46.3 23.6 3.3e-12 45.8 16.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920223|ref|YP_686010.1| - 4.2e-12 45.7 34.0 6.5e-12 45.1 23.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920223|ref|YP_686010.1| - 0.0015 17.6 29.1 0.0015 17.6 20.1 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920223|ref|YP_686010.1| - 0.063 12.5 36.5 0.0043 16.3 19.3 2.7 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920224|ref|YP_686009.1| - 3.6e-18 65.4 26.4 1.7e-17 63.2 18.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920224|ref|YP_686009.1| - 3.3e-09 36.2 39.7 4.6e-09 35.7 27.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein Cyd_oper_YbgE PF09600.5 gi|147920224|ref|YP_686009.1| - 0.064 13.4 0.9 0.064 13.4 0.6 3.3 3 1 0 3 3 3 0 Cyd operon protein YbgE (Cyd_oper_YbgE) NB PF04159.8 gi|147920224|ref|YP_686009.1| - 0.1 12.3 2.6 0.25 11.0 1.8 1.7 1 0 0 1 1 1 0 NB glycoprotein Xpo1 PF08389.7 gi|147920224|ref|YP_686009.1| - 1.2 9.0 4.8 0.93 9.3 0.3 2.6 2 1 0 2 2 2 0 Exportin 1-like protein ABC2_membrane_5 PF13346.1 gi|147920224|ref|YP_686009.1| - 2.2 7.5 42.7 0.36 10.0 25.6 2.3 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF1495 PF07381.6 gi|147920226|ref|YP_686007.1| - 2.4e-29 100.8 0.1 2.9e-29 100.5 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) ABC_tran PF00005.22 gi|147920227|ref|YP_686006.1| - 2.8e-30 105.4 0.0 4.2e-30 104.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920227|ref|YP_686006.1| - 7.3e-12 45.8 0.0 2.1e-06 27.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|147920227|ref|YP_686006.1| - 1.5e-05 25.3 0.0 3.4e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|147920227|ref|YP_686006.1| - 0.0017 18.7 0.0 0.0024 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147920227|ref|YP_686006.1| - 0.009 15.5 0.3 0.019 14.4 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|147920227|ref|YP_686006.1| - 0.021 14.2 0.0 0.089 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|147920227|ref|YP_686006.1| - 0.033 13.3 0.0 0.053 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|147920227|ref|YP_686006.1| - 0.041 13.8 0.0 0.093 12.6 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|147920227|ref|YP_686006.1| - 0.041 12.9 0.0 0.29 10.1 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain CarboxypepD_reg PF13620.1 gi|147920228|ref|YP_686005.1| - 2.4e-20 72.3 17.9 2.5e-12 46.6 2.7 3.8 3 2 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920228|ref|YP_686005.1| - 1.1e-11 44.5 10.1 1.8e-09 37.5 0.3 3.2 4 0 0 4 4 2 2 Domain of unknown function (DUF4480) NPCBM_assoc PF10633.4 gi|147920228|ref|YP_686005.1| - 1.7e-08 34.4 2.1 0.00023 21.1 0.0 3.0 2 0 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|147920228|ref|YP_686005.1| - 1.1e-06 28.6 10.5 0.0011 18.9 0.1 3.9 2 2 1 4 4 4 2 CARDB phage_tail_N PF08400.5 gi|147920228|ref|YP_686005.1| - 8.9e-05 22.2 8.5 0.0026 17.4 0.4 3.7 2 1 1 3 3 3 1 Prophage tail fibre N-terminal DUF11 PF01345.13 gi|147920228|ref|YP_686005.1| - 0.00012 22.0 13.4 0.032 14.2 1.2 3.9 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF4198 PF10670.4 gi|147920228|ref|YP_686005.1| - 0.00044 20.3 1.9 0.018 15.0 0.1 3.2 3 1 1 4 4 4 1 Domain of unknown function (DUF4198) PEGA PF08308.6 gi|147920228|ref|YP_686005.1| - 0.00083 19.1 0.1 0.35 10.6 0.0 3.3 3 0 0 3 3 3 1 PEGA domain MG1 PF11974.3 gi|147920228|ref|YP_686005.1| - 0.00088 19.7 2.1 0.0074 16.8 0.1 3.1 1 1 2 3 3 3 1 Alpha-2-macroglobulin MG1 domain DUF3823 PF12866.2 gi|147920228|ref|YP_686005.1| - 0.079 12.4 2.5 0.82 9.1 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3823) WxL PF13731.1 gi|147920228|ref|YP_686005.1| - 0.091 12.5 6.0 0.064 13.0 1.3 2.2 2 0 0 2 2 2 0 WxL domain surface cell wall-binding Fn3-like PF14310.1 gi|147920228|ref|YP_686005.1| - 0.098 12.6 3.6 5.8 6.9 0.0 4.7 6 1 0 6 6 6 0 Fibronectin type III-like domain PI3K_rbd PF00794.13 gi|147920228|ref|YP_686005.1| - 0.11 12.4 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 PI3-kinase family, ras-binding domain DUF2381 PF09544.5 gi|147920228|ref|YP_686005.1| - 0.13 11.3 0.0 0.25 10.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2381) DUF3869 PF12985.2 gi|147920228|ref|YP_686005.1| - 0.95 9.9 9.5 1.8 8.9 0.4 3.8 2 2 3 5 5 5 0 Domain of unknown function (DUF3869) DUF824 PF05688.6 gi|147920228|ref|YP_686005.1| - 1.2 8.8 5.2 1.9 8.2 0.0 3.8 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) DUF1034 PF06280.7 gi|147920228|ref|YP_686005.1| - 1.5 9.2 8.4 7.8 6.9 0.3 3.7 2 1 1 3 3 3 0 Fn3-like domain (DUF1034) HSP20 PF00011.16 gi|147920229|ref|YP_686004.1| - 1.2e-23 82.8 0.7 1.5e-23 82.5 0.5 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|147920229|ref|YP_686004.1| - 5e-06 26.2 0.2 0.0001 22.0 0.1 2.2 2 0 0 2 2 2 1 GvpH PIH1 PF08190.7 gi|147920229|ref|YP_686004.1| - 0.00015 21.3 0.0 0.00019 21.0 0.0 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 CS PF04969.11 gi|147920229|ref|YP_686004.1| - 0.0006 20.3 0.1 0.00091 19.7 0.1 1.3 1 0 0 1 1 1 1 CS domain DUF3006 PF11213.3 gi|147920229|ref|YP_686004.1| - 0.054 13.2 0.1 0.14 11.9 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) SLEI_Leptospira PF07620.6 gi|147920229|ref|YP_686004.1| - 0.17 11.7 0.5 1.1 9.1 0.0 2.5 3 0 0 3 3 3 0 SLEI CxxCxxCC PF03692.10 gi|147920230|ref|YP_686003.1| - 1.8e-11 44.3 2.8 3.4e-11 43.4 1.9 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain PRT_C PF08372.5 gi|147920231|ref|YP_686002.1| - 0.046 13.2 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal ATP-grasp PF02222.17 gi|147920232|ref|YP_686001.1| - 1.6e-43 148.0 0.0 2.9e-43 147.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|147920232|ref|YP_686001.1| - 1.9e-18 66.8 0.0 3.8e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|147920232|ref|YP_686001.1| - 1.4e-08 34.3 0.0 2.5e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|147920232|ref|YP_686001.1| - 3.6e-08 32.5 0.1 7e-08 31.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|147920232|ref|YP_686001.1| - 3.5e-06 26.4 0.1 6.6e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.6 gi|147920232|ref|YP_686001.1| - 0.00075 19.0 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|147920232|ref|YP_686001.1| - 0.0054 15.8 0.1 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|147920232|ref|YP_686001.1| - 0.008 16.2 0.1 0.018 15.1 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ATPgrasp_ST PF14397.1 gi|147920232|ref|YP_686001.1| - 0.026 13.6 0.0 0.039 13.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp NAD_binding_8 PF13450.1 gi|147920233|ref|YP_686000.1| - 6.3e-09 35.7 0.0 1.7e-08 34.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|147920233|ref|YP_686000.1| - 2.6e-08 33.4 0.0 0.00018 20.7 0.0 2.1 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|147920233|ref|YP_686000.1| - 6.3e-06 25.3 0.8 0.0065 15.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|147920233|ref|YP_686000.1| - 3.1e-05 24.1 0.1 0.075 13.0 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|147920233|ref|YP_686000.1| - 0.00014 20.8 0.1 0.033 13.0 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|147920233|ref|YP_686000.1| - 0.00032 19.2 0.2 0.17 10.3 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|147920233|ref|YP_686000.1| - 0.012 15.4 0.2 0.082 12.7 0.0 2.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|147920233|ref|YP_686000.1| - 0.015 15.7 0.6 0.19 12.1 0.0 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase GDI PF00996.13 gi|147920233|ref|YP_686000.1| - 0.017 13.4 0.1 0.23 9.7 0.0 2.4 3 0 0 3 3 3 0 GDP dissociation inhibitor NAD_binding_9 PF13454.1 gi|147920233|ref|YP_686000.1| - 0.046 13.4 0.7 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|147920233|ref|YP_686000.1| - 0.087 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Isochorismatase PF00857.15 gi|147920234|ref|YP_685999.1| - 9.7e-23 80.9 0.0 1.9e-22 80.0 0.0 1.5 1 1 0 1 1 1 1 Isochorismatase family Cytomega_UL20A PF05984.7 gi|147920235|ref|YP_685998.1| - 6.1 7.1 5.5 0.58 10.3 0.1 2.1 3 0 0 3 3 3 0 Cytomegalovirus UL20A protein AhpC-TSA PF00578.16 gi|147920236|ref|YP_685997.1| - 3.3e-40 136.6 0.0 4.3e-40 136.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147920236|ref|YP_685997.1| - 1.4e-22 79.8 0.0 1.8e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|147920236|ref|YP_685997.1| - 0.054 13.4 0.0 0.077 12.9 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Thioredoxin_4 PF13462.1 gi|147920237|ref|YP_685996.1| - 1.7e-15 57.4 0.0 1.8e-15 57.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|147920237|ref|YP_685996.1| - 1.2e-11 44.5 0.0 1.2e-11 44.4 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain MFS_1 PF07690.11 gi|147920238|ref|YP_685995.1| - 1.7e-53 181.5 52.5 1.7e-53 181.5 36.4 2.4 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147920238|ref|YP_685995.1| - 2.1e-05 23.3 33.7 0.00026 19.6 9.4 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|147920238|ref|YP_685995.1| - 0.016 15.0 0.1 0.016 15.0 0.1 3.3 3 1 0 3 3 3 0 MFS_1 like family PHP PF02811.14 gi|147920239|ref|YP_685994.1| - 2.1e-20 73.2 0.0 1.7e-19 70.2 0.0 2.1 1 1 0 1 1 1 1 PHP domain FmdE PF02663.9 gi|147920240|ref|YP_685993.1| - 5.9e-37 126.4 0.0 7.3e-37 126.1 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF4428 PF14471.1 gi|147920240|ref|YP_685993.1| - 0.0035 17.0 0.2 0.0061 16.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Zn_ribbon_recom PF13408.1 gi|147920240|ref|YP_685993.1| - 0.11 12.8 0.9 0.18 12.0 0.6 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-dskA_traR PF01258.12 gi|147920240|ref|YP_685993.1| - 1 9.1 6.8 0.18 11.5 0.7 2.5 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger HrcA_DNA-bdg PF03444.10 gi|147920241|ref|YP_685992.1| - 2.2e-36 123.1 0.2 7.9e-36 121.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|147920241|ref|YP_685992.1| - 1.1e-29 101.8 2.1 1.5e-14 53.4 0.1 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|147920241|ref|YP_685992.1| - 2.8e-08 33.7 0.1 6.6e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|147920241|ref|YP_685992.1| - 3.3e-08 33.0 0.0 6.7e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|147920241|ref|YP_685992.1| - 8.8e-05 21.8 0.4 0.00032 20.0 0.3 2.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|147920241|ref|YP_685992.1| - 0.0003 20.4 0.0 0.0011 18.6 0.0 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|147920241|ref|YP_685992.1| - 0.00042 19.8 0.0 0.00078 18.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|147920241|ref|YP_685992.1| - 0.0016 18.0 0.0 0.004 16.7 0.0 1.7 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|147920241|ref|YP_685992.1| - 0.0078 15.7 0.9 0.062 12.8 0.1 2.5 3 0 0 3 3 3 1 LexA DNA binding domain HTH_20 PF12840.2 gi|147920241|ref|YP_685992.1| - 0.012 15.4 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|147920241|ref|YP_685992.1| - 0.017 14.7 0.0 0.043 13.4 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Aconitase_2_N PF06434.8 gi|147920241|ref|YP_685992.1| - 0.018 14.4 0.1 0.037 13.4 0.0 1.6 2 0 0 2 2 2 0 Aconitate hydratase 2 N-terminus HTH_27 PF13463.1 gi|147920241|ref|YP_685992.1| - 0.028 14.7 0.0 0.065 13.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe-ADH_2 PF13685.1 gi|147920242|ref|YP_685991.1| - 1e-71 241.1 1.5 1.4e-71 240.7 1.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|147920242|ref|YP_685991.1| - 1.3e-25 89.8 4.8 2.5e-25 88.8 3.3 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|147920242|ref|YP_685991.1| - 9e-05 21.5 0.2 0.00076 18.4 0.2 2.1 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF63 PF01889.12 gi|147920243|ref|YP_685990.1| - 1.9e-103 346.2 23.0 2.2e-103 346.0 16.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF939 PF06081.6 gi|147920243|ref|YP_685990.1| - 3 7.7 16.6 0.039 13.8 1.7 3.2 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF939) DUF95 PF01944.12 gi|147920244|ref|YP_685989.1| - 3.5e-31 108.1 20.1 4.5e-31 107.8 13.9 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF4661 PF15576.1 gi|147920244|ref|YP_685989.1| - 1.2 8.7 3.2 1.6 8.3 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4661) Fibrinogen_aC PF12160.3 gi|147920245|ref|YP_685988.1| - 0.078 12.4 0.9 0.1 12.0 0.6 1.2 1 0 0 1 1 1 0 Fibrinogen alpha C domain DUF95 PF01944.12 gi|147920246|ref|YP_685987.1| - 3.1e-32 111.5 21.9 3.8e-32 111.3 15.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 DUF2371 PF10177.4 gi|147920246|ref|YP_685987.1| - 0.33 10.8 4.8 0.083 12.7 0.8 1.7 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) NadA PF02445.11 gi|147920247|ref|YP_685986.1| - 7.9e-120 399.1 0.8 8.9e-120 398.9 0.6 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Sigma70_r4_2 PF08281.7 gi|147920247|ref|YP_685986.1| - 0.034 13.6 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HypD PF01924.11 gi|147920248|ref|YP_685985.1| - 4.7e-140 466.3 1.2 5.4e-140 466.1 0.9 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family OppC_N PF12911.2 gi|147920249|ref|YP_685984.1| - 0.018 14.4 0.5 0.046 13.0 0.3 1.7 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C EF1_GNE PF00736.14 gi|147920250|ref|YP_685983.1| - 9.8e-21 73.2 0.0 1e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF669 PF05037.8 gi|147920250|ref|YP_685983.1| - 0.00061 19.6 0.0 0.00072 19.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF669) DUF1610 PF07754.6 gi|147920251|ref|YP_685982.1| - 5.2e-09 36.0 19.0 5.5e-06 26.3 5.4 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-UBP PF02148.14 gi|147920251|ref|YP_685982.1| - 0.011 15.8 0.5 0.011 15.8 0.3 1.9 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DZR PF12773.2 gi|147920251|ref|YP_685982.1| - 0.021 14.6 13.2 1.6 8.5 9.2 2.3 1 1 0 1 1 1 0 Double zinc ribbon DUF4428 PF14471.1 gi|147920251|ref|YP_685982.1| - 0.024 14.3 5.5 0.024 14.3 3.8 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4428) zf-RING_5 PF14634.1 gi|147920251|ref|YP_685982.1| - 0.025 14.2 12.4 0.22 11.3 1.2 2.3 2 0 0 2 2 2 0 zinc-RING finger domain PhnA_Zn_Ribbon PF08274.7 gi|147920251|ref|YP_685982.1| - 0.071 12.9 9.3 3.1 7.6 0.6 3.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-Sec23_Sec24 PF04810.10 gi|147920251|ref|YP_685982.1| - 0.08 12.5 12.4 1.8 8.2 1.0 3.3 1 1 2 3 3 3 0 Sec23/Sec24 zinc finger Zn_Tnp_IS91 PF14319.1 gi|147920251|ref|YP_685982.1| - 0.13 11.8 8.3 0.15 11.5 5.8 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain PolC_DP2 PF03833.8 gi|147920251|ref|YP_685982.1| - 0.14 9.7 7.1 0.15 9.6 4.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|147920251|ref|YP_685982.1| - 0.23 11.1 11.1 0.1 12.2 4.3 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain FYVE_2 PF02318.11 gi|147920251|ref|YP_685982.1| - 0.24 11.3 5.9 0.27 11.1 4.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger DUF2039 PF10217.4 gi|147920251|ref|YP_685982.1| - 0.42 10.6 9.9 0.045 13.7 3.3 1.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) DUF1272 PF06906.6 gi|147920251|ref|YP_685982.1| - 0.46 10.3 8.9 0.83 9.5 6.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.1 gi|147920251|ref|YP_685982.1| - 0.53 10.0 11.8 1.3 8.7 2.1 2.4 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) FYVE PF01363.16 gi|147920251|ref|YP_685982.1| - 0.79 9.6 9.5 1.8 8.4 6.6 1.6 1 1 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.11 gi|147920251|ref|YP_685982.1| - 0.83 9.3 16.0 0.49 10.0 3.7 2.8 1 1 1 2 2 2 0 HIT zinc finger C1_3 PF07649.7 gi|147920251|ref|YP_685982.1| - 0.91 9.6 13.8 5.2 7.1 6.0 2.9 1 1 0 2 2 2 0 C1-like domain C1_1 PF00130.17 gi|147920251|ref|YP_685982.1| - 1 9.1 12.1 0.1 12.3 1.1 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Mss51 PF13824.1 gi|147920251|ref|YP_685982.1| - 1.3 8.9 11.1 5.3 6.9 1.5 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-Di19 PF05605.7 gi|147920251|ref|YP_685982.1| - 1.5 9.0 9.5 19 5.4 4.5 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-AN1 PF01428.11 gi|147920251|ref|YP_685982.1| - 1.7 8.5 12.0 3.9 7.4 1.9 2.5 1 1 2 3 3 3 0 AN1-like Zinc finger TerY-C PF15616.1 gi|147920251|ref|YP_685982.1| - 1.7 8.5 13.8 2.9 7.8 9.5 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain zf-RING_UBOX PF13445.1 gi|147920251|ref|YP_685982.1| - 2.1 8.1 7.0 12 5.7 3.8 2.3 1 1 1 2 2 2 0 RING-type zinc-finger zf-H2C2_2 PF13465.1 gi|147920251|ref|YP_685982.1| - 2.9 8.3 16.9 0.57 10.5 0.7 3.4 2 2 2 4 4 4 0 Zinc-finger double domain Desulfoferrod_N PF06397.7 gi|147920251|ref|YP_685982.1| - 4.3 6.7 12.1 0.44 9.9 3.7 2.5 2 1 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain ZZ PF00569.12 gi|147920251|ref|YP_685982.1| - 4.6 6.8 9.9 3.3 7.3 3.7 2.5 2 1 0 2 2 2 0 Zinc finger, ZZ type Zn-ribbon_8 PF09723.5 gi|147920251|ref|YP_685982.1| - 5.1 7.1 15.4 7.2 6.6 7.1 3.0 1 1 2 3 3 3 0 Zinc ribbon domain Ribosomal_L37ae PF01780.14 gi|147920251|ref|YP_685982.1| - 5.3 6.9 7.2 2.4e+02 1.6 5.0 2.7 1 1 0 1 1 1 0 Ribosomal L37ae protein family HypA PF01155.14 gi|147920251|ref|YP_685982.1| - 8.3 6.1 11.5 3.2e+02 1.0 7.9 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-HC5HC2H PF13771.1 gi|147920251|ref|YP_685982.1| - 9 6.5 9.9 19 5.4 6.8 1.7 1 1 0 1 1 1 0 PHD-like zinc-binding domain Arginosuc_synth PF00764.14 gi|147920252|ref|YP_685981.1| - 4.3e-175 582.3 0.0 4.9e-175 582.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase NAD_synthase PF02540.12 gi|147920252|ref|YP_685981.1| - 0.0008 18.3 0.0 0.0012 17.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|147920252|ref|YP_685981.1| - 0.0044 16.3 0.0 0.011 15.0 0.0 1.6 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|147920252|ref|YP_685981.1| - 0.0085 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|147920252|ref|YP_685981.1| - 0.054 12.0 0.0 0.11 11.0 0.0 1.5 1 0 0 1 1 1 0 tRNA methyl transferase NosL PF05573.7 gi|147920252|ref|YP_685981.1| - 0.1 12.2 0.2 3.3 7.3 0.0 2.6 2 1 0 2 2 2 0 NosL PadR PF03551.9 gi|147920253|ref|YP_685980.1| - 2.6e-21 75.1 0.1 4.5e-21 74.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|147920253|ref|YP_685980.1| - 0.002 18.0 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|147920253|ref|YP_685980.1| - 0.0079 15.7 0.1 0.01 15.4 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix DUF4098 PF13345.1 gi|147920254|ref|YP_685979.1| - 1.8e-15 56.6 17.6 8.4e-10 38.4 1.3 4.4 4 1 1 5 5 5 2 Domain of unknown function (DUF4098) DUF4097 PF13349.1 gi|147920254|ref|YP_685979.1| - 1.3e-12 47.6 0.1 3.5e-10 39.6 0.0 2.9 1 1 0 2 2 2 2 Domain of unknown function (DUF4097) DUF2154 PF09922.4 gi|147920254|ref|YP_685979.1| - 0.012 15.3 0.1 8.3 6.1 0.0 3.3 3 0 0 3 3 3 0 Cell wall-active antibiotics response protein (DUF2154) DUF4097 PF13349.1 gi|147920255|ref|YP_685978.1| - 1.4e-19 70.2 0.2 5e-16 58.6 0.0 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4097) DUF4098 PF13345.1 gi|147920255|ref|YP_685978.1| - 1.7e-11 43.8 8.1 3.1e-06 27.0 0.0 4.3 2 1 2 4 4 4 3 Domain of unknown function (DUF4098) DUF2154 PF09922.4 gi|147920255|ref|YP_685978.1| - 1e-07 31.6 1.6 0.00025 20.6 0.1 3.2 3 0 0 3 3 3 2 Cell wall-active antibiotics response protein (DUF2154) CTDII PF01556.13 gi|147920255|ref|YP_685978.1| - 0.025 14.4 0.2 12 5.8 0.0 3.7 4 0 0 4 4 4 0 DnaJ C terminal domain DUF4402 PF14352.1 gi|147920255|ref|YP_685978.1| - 0.04 14.3 1.0 0.04 14.3 0.7 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4402) BetaGal_dom2 PF10435.4 gi|147920255|ref|YP_685978.1| - 0.052 12.8 0.3 0.52 9.6 0.0 2.4 2 0 0 2 2 2 0 Beta-galactosidase, domain 2 DUF1628 PF07790.6 gi|147920255|ref|YP_685978.1| - 0.14 12.9 3.3 0.71 10.6 0.2 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF1628) Fimbrial PF00419.15 gi|147920255|ref|YP_685978.1| - 0.27 11.4 2.3 0.24 11.6 0.2 1.8 2 0 0 2 2 2 0 Fimbrial protein S-AdoMet_synt_C PF02773.11 gi|147920255|ref|YP_685978.1| - 3.7 7.2 5.9 3.3 7.4 0.5 3.1 2 1 2 4 4 4 0 S-adenosylmethionine synthetase, C-terminal domain DUF4389 PF14333.1 gi|147920256|ref|YP_685977.1| - 0.05 13.3 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) CPSase_L_D2 PF02786.12 gi|147920257|ref|YP_685976.1| - 8.7e-106 351.9 0.3 4.8e-71 238.3 0.1 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|147920257|ref|YP_685976.1| - 8.2e-49 164.3 0.2 2.8e-23 82.1 0.0 2.9 3 0 0 3 3 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|147920257|ref|YP_685976.1| - 9.3e-44 148.1 0.0 2.3e-43 146.8 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp_4 PF13535.1 gi|147920257|ref|YP_685976.1| - 3.2e-36 124.7 0.0 5.2e-17 62.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|147920257|ref|YP_685976.1| - 6.2e-24 84.3 0.0 2.6e-10 39.5 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon MGS PF02142.17 gi|147920257|ref|YP_685976.1| - 1.7e-23 82.3 0.2 1.1e-21 76.5 0.0 3.6 4 0 0 4 4 4 1 MGS-like domain ATP-grasp PF02222.17 gi|147920257|ref|YP_685976.1| - 1.4e-17 63.5 0.1 6.5e-08 32.1 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|147920257|ref|YP_685976.1| - 6e-13 48.6 0.1 1.8e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|147920257|ref|YP_685976.1| - 3.1e-09 36.8 0.2 0.00052 19.9 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|147920257|ref|YP_685976.1| - 1.7e-08 34.1 0.0 6.8e-05 22.4 0.0 3.0 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.5 gi|147920257|ref|YP_685976.1| - 0.017 14.4 0.0 1.2 8.4 0.0 2.9 3 0 0 3 3 3 0 ATP-grasp domain CPSase_sm_chain PF00988.17 gi|147920258|ref|YP_685975.1| - 7.6e-49 164.5 0.0 1.2e-48 163.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|147920258|ref|YP_685975.1| - 9.6e-45 152.3 0.0 1.3e-44 151.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|147920258|ref|YP_685975.1| - 4e-09 36.2 0.4 7.1e-07 28.8 0.2 2.6 1 1 0 1 1 1 1 Peptidase C26 DUF4401 PF14351.1 gi|147920259|ref|YP_685974.1| - 0.075 12.0 12.0 0.14 11.1 8.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4401) DDE_Tnp_1 PF01609.16 gi|147920260|ref|YP_685973.1| - 3.2e-13 49.7 0.4 1.9e-12 47.1 0.3 2.2 1 1 0 1 1 1 1 Transposase DDE domain ECM1 PF05782.6 gi|147920260|ref|YP_685973.1| - 0.14 10.8 0.1 0.24 10.0 0.1 1.3 1 0 0 1 1 1 0 Extracellular matrix protein 1 (ECM1) DUF1129 PF06570.6 gi|147920261|ref|YP_685972.1| - 0.0068 15.7 3.5 0.0068 15.7 2.4 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1129) Internalin_N PF12354.3 gi|147920261|ref|YP_685972.1| - 0.15 11.7 0.3 0.15 11.7 0.2 3.4 1 1 2 3 3 3 0 Bacterial adhesion/invasion protein N terminal TauE PF01925.14 gi|147920261|ref|YP_685972.1| - 0.25 10.7 7.2 0.29 10.5 5.0 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF4131 PF13567.1 gi|147920261|ref|YP_685972.1| - 0.63 9.4 7.6 2.4 7.5 5.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) PRA1 PF03208.14 gi|147920261|ref|YP_685972.1| - 2.9 7.2 15.8 4 6.7 11.0 1.2 1 0 0 1 1 1 0 PRA1 family protein PGG PF13962.1 gi|147920261|ref|YP_685972.1| - 3.3 7.3 11.6 1.2 8.7 4.2 2.5 2 1 0 2 2 2 0 Domain of unknown function DUF1724 PF08350.5 gi|147920262|ref|YP_685971.1| - 7.6e-22 76.6 0.1 7e-21 73.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_5 PF01022.15 gi|147920262|ref|YP_685971.1| - 2.5e-05 23.8 0.8 7.8e-05 22.2 0.2 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HemN_C PF06969.11 gi|147920262|ref|YP_685971.1| - 0.00029 20.8 0.2 0.3 11.1 0.0 2.9 3 0 0 3 3 3 2 HemN C-terminal domain HTH_45 PF14947.1 gi|147920262|ref|YP_685971.1| - 0.0018 18.0 0.0 0.0055 16.5 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix F_bP_aldolase PF01116.15 gi|147920263|ref|YP_685970.1| - 1e-112 375.9 2.7 1.7e-110 368.6 1.9 2.0 1 1 0 1 1 1 1 Fructose-bisphosphate aldolase class-II PFK PF00365.15 gi|147920264|ref|YP_685969.1| - 2.6e-85 285.8 4.9 6.5e-84 281.2 3.4 2.0 1 1 0 1 1 1 1 Phosphofructokinase DUF128 PF01995.11 gi|147920264|ref|YP_685969.1| - 0.033 13.1 0.0 0.085 11.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF128 LacI PF00356.16 gi|147920265|ref|YP_685968.1| - 0.16 11.5 0.2 0.53 9.9 0.0 2.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family SGL PF08450.7 gi|147920266|ref|YP_685967.1| - 2.8e-09 36.7 0.3 4e-05 23.1 0.0 3.5 1 1 2 3 3 3 2 SMP-30/Gluconolaconase/LRE-like region Reg_prop PF07494.6 gi|147920266|ref|YP_685967.1| - 3.9e-08 32.3 2.2 0.7 10.1 0.0 6.5 7 0 0 7 7 7 1 Two component regulator propeller NHL PF01436.16 gi|147920266|ref|YP_685967.1| - 1.7e-06 27.7 0.2 0.012 15.5 0.0 4.4 4 0 0 4 4 4 1 NHL repeat DEC-1_N PF04625.8 gi|147920266|ref|YP_685967.1| - 2.8 6.5 5.8 4.4 5.8 4.0 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Met_10 PF02475.11 gi|147920267|ref|YP_685965.1| - 8.2e-60 201.8 0.0 9.9e-60 201.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|147920267|ref|YP_685965.1| - 9.3e-06 26.1 0.0 2.1e-05 25.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|147920267|ref|YP_685965.1| - 5.5e-05 22.6 0.0 0.0001 21.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|147920267|ref|YP_685965.1| - 7.1e-05 22.8 0.0 0.00018 21.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|147920267|ref|YP_685965.1| - 0.00015 21.3 0.0 0.0018 17.8 0.0 2.0 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|147920267|ref|YP_685965.1| - 0.15 10.7 0.0 0.26 9.9 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase NMD3 PF04981.8 gi|147920268|ref|YP_685964.1| - 1e-58 198.2 0.0 1.9e-58 197.4 0.0 1.4 2 0 0 2 2 2 1 NMD3 family zinc_ribbon_2 PF13240.1 gi|147920268|ref|YP_685964.1| - 0.054 12.9 2.0 0.15 11.6 0.4 2.4 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|147920268|ref|YP_685964.1| - 0.083 12.4 0.1 0.26 10.8 0.1 1.8 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|147920268|ref|YP_685964.1| - 0.18 11.6 0.3 0.18 11.6 0.2 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|147920268|ref|YP_685964.1| - 0.68 9.2 4.8 2.1 7.6 3.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|147920268|ref|YP_685964.1| - 2.4 8.0 8.8 3.9 7.3 4.7 2.2 2 1 0 2 2 2 0 Double zinc ribbon PRP21_like_P PF12230.3 gi|147920269|ref|YP_685963.1| - 3 7.2 10.5 4.1 6.8 7.2 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein SRP-alpha_N PF04086.8 gi|147920269|ref|YP_685963.1| - 3.6 6.9 9.3 4.9 6.4 6.4 1.2 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal Mucin PF01456.12 gi|147920269|ref|YP_685963.1| - 6.2 6.5 25.0 9.4 5.9 17.3 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein E1-E2_ATPase PF00122.15 gi|147920270|ref|YP_685960.1| - 7.6e-60 201.8 3.8 7.6e-60 201.8 2.7 2.0 2 1 1 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147920270|ref|YP_685960.1| - 7.4e-34 118.0 2.0 1.2e-33 117.3 1.4 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|147920270|ref|YP_685960.1| - 3.8e-32 111.2 5.7 3.8e-32 111.2 4.0 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|147920270|ref|YP_685960.1| - 2.7e-15 57.0 0.0 6e-15 55.9 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|147920270|ref|YP_685960.1| - 9.7e-12 44.1 0.5 2.4e-11 42.9 0.0 2.0 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|147920270|ref|YP_685960.1| - 4.3e-06 26.4 1.0 0.00048 19.7 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Fe_dep_repr_C PF02742.10 gi|147920271|ref|YP_685959.1| - 2e-28 97.8 0.3 4.2e-28 96.8 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|147920271|ref|YP_685959.1| - 1.2e-18 66.7 0.1 2.5e-18 65.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|147920271|ref|YP_685959.1| - 1.8e-13 50.2 0.0 5.9e-13 48.5 0.0 1.8 2 0 0 2 2 2 1 FeoA domain HTH_24 PF13412.1 gi|147920271|ref|YP_685959.1| - 9.2e-05 21.7 0.0 0.00017 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147920271|ref|YP_685959.1| - 9.8e-05 21.9 0.0 0.00021 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|147920271|ref|YP_685959.1| - 0.00033 20.3 0.0 0.00088 19.0 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|147920271|ref|YP_685959.1| - 0.00041 19.8 0.0 0.00071 19.0 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.5 gi|147920271|ref|YP_685959.1| - 0.00049 19.6 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|147920271|ref|YP_685959.1| - 0.00054 19.6 0.0 0.0017 18.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|147920271|ref|YP_685959.1| - 0.00058 20.1 0.0 0.0026 18.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|147920271|ref|YP_685959.1| - 0.00067 19.2 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|147920271|ref|YP_685959.1| - 0.0034 17.4 0.0 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator FaeA PF04703.7 gi|147920271|ref|YP_685959.1| - 0.0056 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|147920271|ref|YP_685959.1| - 0.0066 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|147920271|ref|YP_685959.1| - 0.014 14.9 0.0 0.036 13.6 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_37 PF13744.1 gi|147920271|ref|YP_685959.1| - 0.058 13.2 0.1 0.14 11.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|147920271|ref|YP_685959.1| - 0.06 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit FeoB_N PF02421.13 gi|147920272|ref|YP_685958.1| - 8.6e-53 177.7 0.1 1.3e-52 177.2 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|147920272|ref|YP_685958.1| - 1.7e-27 95.5 26.9 1.2e-14 54.1 6.0 3.4 3 1 1 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|147920272|ref|YP_685958.1| - 7e-15 54.9 0.1 1.3e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|147920272|ref|YP_685958.1| - 1.2e-13 50.2 1.0 1.2e-13 50.2 0.7 3.6 3 0 0 3 3 3 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|147920272|ref|YP_685958.1| - 0.0022 17.2 0.0 0.0033 16.6 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.12 gi|147920272|ref|YP_685958.1| - 0.013 15.0 0.4 0.16 11.4 0.0 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|147920272|ref|YP_685958.1| - 0.014 15.9 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|147920272|ref|YP_685958.1| - 0.032 14.0 2.0 1.6 8.4 0.2 2.4 1 1 1 2 2 2 0 Dynamin family GTP_EFTU PF00009.22 gi|147920272|ref|YP_685958.1| - 0.049 13.0 0.1 7.7 5.8 0.0 2.5 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|147920272|ref|YP_685958.1| - 0.053 12.2 0.1 2 7.1 0.0 2.2 2 0 0 2 2 2 0 ArgK protein AAA_28 PF13521.1 gi|147920272|ref|YP_685958.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain CarboxypepD_reg PF13620.1 gi|147920273|ref|YP_685957.1| - 4.6e-07 29.8 9.4 7.3e-06 25.9 0.8 2.7 2 1 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920273|ref|YP_685957.1| - 1.3e-06 28.3 1.8 0.00057 19.8 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) DUF4198 PF10670.4 gi|147920273|ref|YP_685957.1| - 8.8e-06 25.8 0.1 0.0042 17.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4198) Big_1 PF02369.11 gi|147920273|ref|YP_685957.1| - 3.1e-05 23.7 3.4 0.00025 20.9 0.1 2.8 2 1 1 3 3 3 1 Bacterial Ig-like domain (group 1) fn3_3 PF14686.1 gi|147920273|ref|YP_685957.1| - 0.00054 20.0 0.6 0.0015 18.6 0.4 1.8 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.1 gi|147920274|ref|YP_685956.1| - 0.0028 17.6 0.2 0.0082 16.1 0.1 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920274|ref|YP_685956.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) DUF1510 PF07423.6 gi|147920275|ref|YP_685955.1| - 0.00015 21.2 1.1 0.00021 20.7 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1510) Nop14 PF04147.7 gi|147920275|ref|YP_685955.1| - 0.041 11.8 9.8 0.052 11.4 6.8 1.0 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.9 gi|147920275|ref|YP_685955.1| - 0.14 10.1 5.6 0.17 9.8 3.9 1.1 1 0 0 1 1 1 0 CDC45-like protein Menin PF05053.8 gi|147920275|ref|YP_685955.1| - 0.73 7.9 8.5 1 7.4 5.9 1.1 1 0 0 1 1 1 0 Menin DUF605 PF04652.11 gi|147920275|ref|YP_685955.1| - 0.83 8.9 17.4 0.99 8.7 12.1 1.1 1 0 0 1 1 1 0 Vta1 like Daxx PF03344.10 gi|147920275|ref|YP_685955.1| - 7.3 4.9 13.4 10 4.4 9.3 1.1 1 0 0 1 1 1 0 Daxx Family CarboxypepD_reg PF13620.1 gi|147920276|ref|YP_685954.1| - 0.0048 16.9 0.6 0.0075 16.3 0.4 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Phage_Coat_B PF05356.6 gi|147920276|ref|YP_685954.1| - 0.0095 15.6 0.6 0.025 14.2 0.4 1.9 1 1 0 1 1 1 1 Phage Coat protein B Lactamase_B_2 PF12706.2 gi|147920277|ref|YP_685953.1| - 3.6e-21 75.5 0.0 7.5e-21 74.5 0.0 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147920277|ref|YP_685953.1| - 1.9e-14 53.7 1.8 5.8e-14 52.2 1.3 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.10 gi|147920277|ref|YP_685953.1| - 0.09 11.6 0.2 0.26 10.1 0.1 1.7 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II DUF1495 PF07381.6 gi|147920278|ref|YP_685952.1| - 2.9e-30 103.7 0.1 3.5e-30 103.5 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF387 PF04079.11 gi|147920278|ref|YP_685952.1| - 0.055 12.8 0.0 0.22 10.8 0.0 1.9 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) HTH_27 PF13463.1 gi|147920278|ref|YP_685952.1| - 0.088 13.1 0.0 0.14 12.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain ABC2_membrane_2 PF12679.2 gi|147920280|ref|YP_685950.1| - 6.8e-20 71.0 24.3 7.9e-20 70.8 16.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920280|ref|YP_685950.1| - 3.3e-07 29.7 33.0 3.3e-07 29.7 22.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920280|ref|YP_685950.1| - 0.03 13.3 36.8 0.052 12.5 25.3 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920281|ref|YP_685949.1| - 2e-14 53.1 17.8 4.6e-14 51.9 12.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920281|ref|YP_685949.1| - 1.9e-11 43.6 27.5 3.4e-11 42.7 19.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920281|ref|YP_685949.1| - 0.00017 20.7 23.7 0.00017 20.7 16.4 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920281|ref|YP_685949.1| - 0.025 13.8 28.9 0.0098 15.2 14.4 2.7 2 1 0 2 2 2 0 ABC-2 family transporter protein RCC1 PF00415.13 gi|147920282|ref|YP_685948.1| - 1.4e-54 182.0 24.1 2.8e-11 43.4 0.3 7.5 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|147920282|ref|YP_685948.1| - 2.5e-53 176.6 33.3 6.1e-11 41.6 1.3 7.5 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Peptidase_S41 PF03572.13 gi|147920282|ref|YP_685948.1| - 0.02 14.2 0.1 0.19 11.0 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S41 KaiC PF06745.8 gi|147920283|ref|YP_685947.1| - 2.3e-26 92.3 0.0 2.9e-26 92.0 0.0 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|147920283|ref|YP_685947.1| - 6.4e-13 48.2 0.0 7.2e-09 34.9 0.0 2.0 2 0 0 2 2 2 2 PAXNEB protein GvpD PF07088.6 gi|147920283|ref|YP_685947.1| - 0.0034 15.7 0.1 0.81 7.9 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DUF429 PF04250.8 gi|147920285|ref|YP_685945.1| - 5e-36 123.9 0.6 3.3e-34 117.9 0.4 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF429) AP_endonuc_2 PF01261.19 gi|147920286|ref|YP_685944.1| - 3.2e-29 101.7 0.2 4.3e-29 101.3 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.8 gi|147920286|ref|YP_685944.1| - 0.00061 18.4 0.1 0.0011 17.6 0.0 1.4 2 0 0 2 2 2 1 D-mannonate dehydratase (UxuA) Glyoxalase_4 PF13669.1 gi|147920286|ref|YP_685944.1| - 0.0053 16.7 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glycos_transf_1 PF00534.15 gi|147920288|ref|YP_685942.1| - 1.8e-35 121.8 0.0 2.5e-35 121.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147920288|ref|YP_685942.1| - 3.2e-19 69.6 0.0 8.6e-19 68.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|147920288|ref|YP_685942.1| - 8.6e-14 51.8 0.0 2.6e-13 50.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147920288|ref|YP_685942.1| - 1.9e-13 50.4 0.1 1.7e-11 44.1 0.1 2.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|147920288|ref|YP_685942.1| - 1e-12 48.1 0.1 3.6e-12 46.3 0.0 1.9 1 1 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|147920288|ref|YP_685942.1| - 2.2e-07 31.0 0.0 4.1e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.8 gi|147920288|ref|YP_685942.1| - 0.0033 15.7 0.0 0.22 9.7 0.0 2.1 2 0 0 2 2 2 2 Glycogen synthase TrkA_N PF02254.13 gi|147920288|ref|YP_685942.1| - 0.055 13.4 0.1 2.7 8.0 0.0 2.3 2 0 0 2 2 2 0 TrkA-N domain Pribosyltran_N PF13793.1 gi|147920289|ref|YP_685941.1| - 7.6e-28 96.5 0.0 5.9e-25 87.2 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|147920289|ref|YP_685941.1| - 2.4e-15 56.3 1.9 6.1e-14 51.8 0.3 2.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|147920289|ref|YP_685941.1| - 3.7e-08 33.3 1.2 1.9e-07 30.9 0.4 2.0 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|147920289|ref|YP_685941.1| - 0.00023 20.4 0.0 0.00044 19.5 0.0 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|147920289|ref|YP_685941.1| - 0.0067 15.7 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase DUF1884 PF08967.5 gi|147920289|ref|YP_685941.1| - 0.013 15.5 0.2 0.11 12.5 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1884) PNP_UDP_1 PF01048.15 gi|147920289|ref|YP_685941.1| - 0.032 13.2 0.4 0.22 10.4 0.0 2.1 2 0 0 2 2 2 0 Phosphorylase superfamily PRTase_3 PF15610.1 gi|147920289|ref|YP_685941.1| - 0.15 10.9 0.1 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like Glycos_transf_1 PF00534.15 gi|147920291|ref|YP_685939.1| - 9.3e-30 103.2 0.0 1.4e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147920291|ref|YP_685939.1| - 3.3e-16 59.8 0.1 3.8e-15 56.3 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|147920291|ref|YP_685939.1| - 1e-14 54.8 0.1 2.5e-14 53.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147920291|ref|YP_685939.1| - 6.7e-14 51.9 0.2 1.1e-13 51.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|147920291|ref|YP_685939.1| - 2.2e-12 46.9 0.8 2.8e-06 27.0 0.6 2.5 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.1 gi|147920291|ref|YP_685939.1| - 1.4e-08 34.9 0.0 6.6e-08 32.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147920291|ref|YP_685939.1| - 0.017 14.9 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glyco_hydro_57 PF03065.10 gi|147920292|ref|YP_685938.1| - 1.1e-61 208.7 0.0 3.8e-61 206.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Antimicrobial_9 PF08104.6 gi|147920292|ref|YP_685938.1| - 0.024 14.4 0.1 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Ponericin L family Polysacc_deac_1 PF01522.16 gi|147920292|ref|YP_685938.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase GalP_UDP_transf PF01087.17 gi|147920293|ref|YP_685936.1| - 1e-15 58.2 0.1 3.9e-15 56.3 0.0 1.8 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|147920293|ref|YP_685936.1| - 8e-08 31.9 0.0 1.3e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.18 gi|147920293|ref|YP_685936.1| - 0.00035 21.0 0.0 0.039 14.4 0.0 2.5 2 0 0 2 2 2 1 HIT domain Lar_restr_allev PF14354.1 gi|147920293|ref|YP_685936.1| - 0.14 12.5 0.1 0.31 11.3 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar ResIII PF04851.10 gi|147920295|ref|YP_685934.1| - 1.2e-38 132.7 0.3 5.8e-38 130.5 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit EcoEI_R_C PF08463.5 gi|147920295|ref|YP_685934.1| - 1.9e-36 125.3 0.7 1.9e-36 125.3 0.5 2.4 3 0 0 3 3 3 1 EcoEI R protein C-terminal DEAD PF00270.24 gi|147920295|ref|YP_685934.1| - 3.4e-09 36.4 0.1 2.5e-08 33.6 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase HSDR_N PF04313.9 gi|147920295|ref|YP_685934.1| - 1.2e-06 28.4 0.0 0.0014 18.4 0.0 3.6 2 1 1 3 3 3 2 Type I restriction enzyme R protein N terminus (HSDR_N) SNF2_N PF00176.18 gi|147920295|ref|YP_685934.1| - 3.1e-05 22.9 0.0 5.8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|147920295|ref|YP_685934.1| - 0.0026 17.6 0.0 0.0067 16.2 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain CbiA PF01656.18 gi|147920295|ref|YP_685934.1| - 0.03 13.7 0.0 0.39 10.0 0.0 2.8 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain FtsK_SpoIIIE PF01580.13 gi|147920295|ref|YP_685934.1| - 0.037 13.4 0.0 0.18 11.2 0.0 2.2 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|147920295|ref|YP_685934.1| - 0.088 12.5 0.0 0.44 10.3 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain Methylase_S PF01420.14 gi|147920296|ref|YP_685933.1| - 3.5e-36 124.7 5.3 7.3e-23 81.3 1.3 2.2 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain Transpos_assoc PF13963.1 gi|147920296|ref|YP_685933.1| - 0.047 13.6 0.1 5.1 7.1 0.0 3.0 3 0 0 3 3 3 0 Transposase-associated domain TrmB PF01978.14 gi|147920297|ref|YP_685932.1| - 8.6e-06 25.3 0.0 0.0027 17.3 0.0 3.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.1 gi|147920297|ref|YP_685932.1| - 0.037 13.2 0.0 0.099 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|147920297|ref|YP_685932.1| - 0.071 13.4 0.0 0.19 12.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain N6_Mtase PF02384.11 gi|147920299|ref|YP_685930.1| - 7.6e-68 228.8 0.0 1.1e-67 228.3 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|147920299|ref|YP_685930.1| - 1.4e-15 57.9 0.1 9.3e-15 55.2 0.0 2.3 1 1 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|147920299|ref|YP_685930.1| - 3.3e-12 46.3 0.0 6e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|147920299|ref|YP_685930.1| - 2.6e-11 43.5 0.0 5.9e-11 42.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920299|ref|YP_685930.1| - 0.00097 18.7 0.1 0.0038 16.8 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|147920299|ref|YP_685930.1| - 0.0013 19.1 0.0 0.0034 17.6 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|147920299|ref|YP_685930.1| - 0.0072 15.7 0.0 0.081 12.2 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|147920299|ref|YP_685930.1| - 0.034 14.7 0.0 0.088 13.3 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain GHMP_kinases_N PF00288.21 gi|147920300|ref|YP_685929.1| - 1.6e-11 44.1 1.0 3.3e-11 43.0 0.7 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|147920300|ref|YP_685929.1| - 0.0001 22.3 0.1 0.00027 21.0 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal CM_2 PF01817.16 gi|147920301|ref|YP_685928.1| - 2.4e-16 59.5 4.3 2.7e-16 59.4 3.0 1.0 1 0 0 1 1 1 1 Chorismate mutase type II Gon7 PF08738.5 gi|147920301|ref|YP_685928.1| - 0.14 12.1 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Gon7 family PDH PF02153.12 gi|147920302|ref|YP_685927.1| - 1.4e-39 135.5 0.0 1.7e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|147920302|ref|YP_685927.1| - 1.3e-06 28.7 0.0 2.5e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|147920302|ref|YP_685927.1| - 0.00023 21.0 0.0 0.00048 20.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|147920302|ref|YP_685927.1| - 0.0046 16.3 0.0 0.0089 15.4 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|147920302|ref|YP_685927.1| - 0.0098 15.0 0.0 0.04 13.0 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|147920302|ref|YP_685927.1| - 0.019 14.5 0.0 6 6.4 0.0 3.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|147920302|ref|YP_685927.1| - 0.035 14.1 0.2 0.16 11.9 0.1 2.0 2 0 0 2 2 2 0 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|147920302|ref|YP_685927.1| - 0.12 12.0 0.0 4.4 7.0 0.0 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NmrA PF05368.8 gi|147920302|ref|YP_685927.1| - 0.15 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Shikimate_dh_N PF08501.6 gi|147920303|ref|YP_685926.1| - 2.4e-27 94.7 0.0 7.4e-27 93.2 0.0 1.8 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|147920303|ref|YP_685926.1| - 6.7e-18 65.1 0.0 9.8e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|147920303|ref|YP_685926.1| - 5.3e-05 22.3 0.4 7.4e-05 21.8 0.3 1.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase THF_DHG_CYH_C PF02882.14 gi|147920303|ref|YP_685926.1| - 0.00032 19.8 0.0 0.0028 16.7 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.1 gi|147920303|ref|YP_685926.1| - 0.00062 19.8 0.6 0.00097 19.1 0.4 1.4 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|147920303|ref|YP_685926.1| - 0.0012 19.2 0.4 0.0025 18.1 0.2 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|147920303|ref|YP_685926.1| - 0.0026 18.0 0.1 0.0036 17.5 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|147920303|ref|YP_685926.1| - 0.029 13.5 0.0 0.059 12.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Malic_M PF03949.10 gi|147920303|ref|YP_685926.1| - 0.15 11.6 1.8 0.23 11.0 1.3 1.2 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain Thymidylate_kin PF02223.12 gi|147920304|ref|YP_685925.1| - 1e-27 96.7 0.0 1.2e-27 96.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|147920304|ref|YP_685925.1| - 1.2e-06 28.8 0.0 2.3e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain dNK PF01712.14 gi|147920304|ref|YP_685925.1| - 0.001 19.0 0.0 0.0049 16.7 0.0 1.9 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_17 PF13207.1 gi|147920304|ref|YP_685925.1| - 0.0028 18.4 0.1 0.0074 17.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|147920304|ref|YP_685925.1| - 0.011 15.5 0.0 0.062 13.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|147920304|ref|YP_685925.1| - 0.027 13.7 0.0 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|147920304|ref|YP_685925.1| - 0.075 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF362 PF04015.7 gi|147920305|ref|YP_685924.1| - 1.2e-45 155.5 0.0 1.6e-45 155.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|147920305|ref|YP_685924.1| - 8.7e-07 28.2 15.6 0.0012 18.4 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147920305|ref|YP_685924.1| - 9.4e-07 28.4 14.3 0.0006 19.5 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147920305|ref|YP_685924.1| - 1.3e-06 28.6 9.6 0.0041 17.4 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920305|ref|YP_685924.1| - 4.4e-06 26.8 10.7 2.8e-05 24.2 7.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147920305|ref|YP_685924.1| - 6.6e-06 25.8 7.6 0.0066 16.2 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920305|ref|YP_685924.1| - 2.3e-05 25.0 11.5 0.028 15.1 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|147920305|ref|YP_685924.1| - 2.3e-05 24.1 11.8 0.00019 21.1 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920305|ref|YP_685924.1| - 4.9e-05 23.0 14.8 0.01 15.7 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147920305|ref|YP_685924.1| - 5.6e-05 23.4 4.1 0.028 14.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147920305|ref|YP_685924.1| - 0.00029 20.8 11.4 0.017 15.1 1.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920305|ref|YP_685924.1| - 0.00037 20.8 6.7 0.033 14.6 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147920305|ref|YP_685924.1| - 0.00061 20.1 15.0 0.061 13.9 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147920305|ref|YP_685924.1| - 0.0044 17.2 15.0 0.062 13.6 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147920305|ref|YP_685924.1| - 2 9.0 10.6 2.1 8.9 1.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147920305|ref|YP_685924.1| - 2.4 8.6 13.7 0.71 10.2 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain SecD_SecF PF02355.11 gi|147920307|ref|YP_685922.1| - 2.1e-30 105.3 18.2 2.1e-30 105.3 12.6 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|147920307|ref|YP_685922.1| - 5.5e-07 28.4 0.2 1.3e-06 27.3 0.1 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|147920307|ref|YP_685922.1| - 0.091 11.4 22.5 0.018 13.7 13.2 1.5 2 0 0 2 2 2 0 MMPL family SecD_SecF PF02355.11 gi|147920308|ref|YP_685921.1| - 3.8e-16 58.8 7.3 3.8e-16 58.8 5.0 1.5 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|147920308|ref|YP_685921.1| - 0.00012 21.0 0.4 0.00032 19.7 0.3 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif MMPL PF03176.10 gi|147920308|ref|YP_685921.1| - 0.016 13.9 10.5 0.024 13.3 7.3 1.3 1 0 0 1 1 1 0 MMPL family Sterol-sensing PF12349.3 gi|147920308|ref|YP_685921.1| - 0.017 14.5 5.2 0.046 13.1 3.6 1.6 1 1 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation TraA PF05513.6 gi|147920308|ref|YP_685921.1| - 0.086 13.0 0.2 0.086 13.0 0.2 2.3 2 0 0 2 2 2 0 TraA CxxCxxCC PF03692.10 gi|147920309|ref|YP_685920.1| - 6.3e-06 26.5 12.3 0.00012 22.4 7.6 2.6 2 1 0 2 2 2 1 Putative zinc- or iron-chelating domain zf-ribbon_3 PF13248.1 gi|147920310|ref|YP_685919.1| - 2.5e-10 39.2 26.3 1e-05 24.5 4.6 3.4 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|147920310|ref|YP_685919.1| - 2.9e-09 36.6 11.4 2.9e-09 36.6 7.9 3.4 2 1 2 4 4 4 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|147920310|ref|YP_685919.1| - 1e-07 31.1 23.7 0.00015 21.0 1.4 4.4 3 1 1 4 4 4 3 zinc-ribbon domain UPF0547 PF10571.4 gi|147920310|ref|YP_685919.1| - 0.0043 16.7 3.6 0.0043 16.7 2.5 5.1 5 1 0 5 5 5 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|147920310|ref|YP_685919.1| - 0.0049 16.3 25.8 0.72 9.4 0.9 5.5 4 1 0 4 4 4 3 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|147920310|ref|YP_685919.1| - 0.15 11.8 17.5 0.13 12.0 3.0 3.5 3 1 0 3 3 3 0 zinc-ribbons DRP PF06044.7 gi|147920310|ref|YP_685919.1| - 0.16 10.9 0.1 0.16 10.9 0.1 2.0 1 1 1 2 2 2 0 Dam-replacing family Ribosomal_L32p PF01783.18 gi|147920310|ref|YP_685919.1| - 0.23 11.6 8.9 0.8 9.9 0.2 3.6 2 1 1 3 3 3 0 Ribosomal L32p protein family PolC_DP2 PF03833.8 gi|147920310|ref|YP_685919.1| - 0.95 7.0 13.5 0.018 12.7 3.7 1.9 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 GFA PF04828.9 gi|147920310|ref|YP_685919.1| - 3.8 7.5 22.2 32 4.5 0.2 5.1 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Prok-RING_2 PF14445.1 gi|147920310|ref|YP_685919.1| - 4.5 7.2 12.7 0.26 11.2 0.4 3.3 3 0 0 3 3 3 0 Prokaryotic RING finger family 2 tRNA-synt_1g PF09334.6 gi|147920310|ref|YP_685919.1| - 6.3 5.3 5.8 8.8 4.8 3.1 2.1 1 1 1 2 2 2 0 tRNA synthetases class I (M) DZR PF12773.2 gi|147920311|ref|YP_685918.1| - 1.4e-14 53.6 55.1 2.4e-09 36.8 7.3 3.7 1 1 3 4 4 4 4 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|147920311|ref|YP_685918.1| - 2.7e-12 45.4 48.3 9.7e-08 30.9 2.5 5.6 4 1 1 5 5 5 4 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147920311|ref|YP_685918.1| - 8.3e-10 37.8 46.3 5.3e-05 22.5 2.4 5.3 6 0 0 6 6 6 4 zinc-ribbon domain UPF0547 PF10571.4 gi|147920311|ref|YP_685918.1| - 0.00042 19.9 4.3 0.00042 19.9 3.0 5.4 5 1 0 5 5 5 2 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.1 gi|147920311|ref|YP_685918.1| - 0.018 14.9 4.6 0.018 14.9 3.2 4.6 3 1 1 4 4 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Prok-RING_1 PF14446.1 gi|147920311|ref|YP_685918.1| - 0.056 13.1 28.4 1.2 8.9 0.2 5.0 3 1 2 5 5 5 0 Prokaryotic RING finger family 1 RRN7 PF11781.3 gi|147920311|ref|YP_685918.1| - 0.061 12.8 1.3 0.061 12.8 0.9 5.0 5 2 1 6 6 6 0 RNA polymerase I-specific transcription initiation factor Rrn7 DUF2089 PF09862.4 gi|147920311|ref|YP_685918.1| - 0.11 12.2 0.1 0.2 11.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) PolC_DP2 PF03833.8 gi|147920311|ref|YP_685918.1| - 0.16 9.6 18.5 0.031 11.9 3.7 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-C3HC4_3 PF13920.1 gi|147920311|ref|YP_685918.1| - 0.18 11.5 29.7 0.42 10.3 0.8 4.8 3 2 1 4 4 4 0 Zinc finger, C3HC4 type (RING finger) tRNA-synt_1g PF09334.6 gi|147920311|ref|YP_685918.1| - 0.24 10.0 11.1 0.14 10.8 0.9 2.4 1 1 2 3 3 3 0 tRNA synthetases class I (M) zf-AN1 PF01428.11 gi|147920311|ref|YP_685918.1| - 2.3 8.1 28.1 0.23 11.3 0.8 4.9 2 1 3 6 6 6 0 AN1-like Zinc finger TPR_11 PF13414.1 gi|147920313|ref|YP_685916.1| - 1.6e-29 101.3 8.5 1.1e-07 31.3 0.0 5.0 3 2 2 5 5 5 5 TPR repeat TPR_14 PF13428.1 gi|147920313|ref|YP_685916.1| - 6.8e-28 94.6 18.2 1.6e-06 28.2 0.1 7.7 1 1 7 8 8 8 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147920313|ref|YP_685916.1| - 1.6e-26 90.0 5.4 1.3e-07 31.0 0.0 7.4 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147920313|ref|YP_685916.1| - 1.4e-25 89.3 17.9 1.4e-09 38.3 0.3 4.8 5 1 0 5 5 4 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147920313|ref|YP_685916.1| - 4.1e-23 81.4 21.2 2.6e-05 24.4 0.1 5.5 1 1 6 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147920313|ref|YP_685916.1| - 2.1e-21 74.2 0.9 0.012 15.8 0.0 7.6 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147920313|ref|YP_685916.1| - 3.3e-19 67.1 0.1 0.0052 16.4 0.0 7.1 5 2 2 7 7 7 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147920313|ref|YP_685916.1| - 1.4e-17 63.3 17.0 1.2e-05 25.1 0.6 5.8 2 2 4 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147920313|ref|YP_685916.1| - 8.5e-16 57.5 21.2 1.2e-06 28.2 1.2 4.3 2 1 2 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147920313|ref|YP_685916.1| - 8.6e-14 50.4 0.4 0.0001 21.7 0.0 6.7 7 0 0 7 7 7 2 Tetratricopeptide repeat TPR_15 PF13429.1 gi|147920313|ref|YP_685916.1| - 2.9e-10 39.6 0.5 0.0093 15.0 0.0 4.1 1 1 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147920313|ref|YP_685916.1| - 3.7e-10 39.5 2.5 0.017 15.5 0.0 7.0 7 0 0 7 7 7 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|147920313|ref|YP_685916.1| - 4.5e-10 39.5 0.2 0.0023 18.0 0.1 3.8 2 2 3 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.1 gi|147920313|ref|YP_685916.1| - 2.5e-09 37.1 1.0 0.041 14.0 0.0 5.2 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|147920313|ref|YP_685916.1| - 1.2e-07 31.4 26.4 0.19 12.2 0.1 7.8 7 1 1 8 8 8 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147920313|ref|YP_685916.1| - 3.9e-07 29.3 11.9 0.2 11.5 0.2 6.6 7 1 1 8 8 8 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|147920313|ref|YP_685916.1| - 0.00051 18.9 0.2 0.17 10.6 0.0 3.2 1 1 2 4 4 4 1 NMDA receptor-regulated protein 1 Fis1_TPR_C PF14853.1 gi|147920313|ref|YP_685916.1| - 0.0075 16.1 3.2 2.2 8.2 0.0 4.5 4 1 1 5 5 5 1 Fis1 C-terminal tetratricopeptide repeat BTAD PF03704.12 gi|147920313|ref|YP_685916.1| - 0.021 15.0 15.1 0.83 9.9 0.7 2.9 1 1 1 2 2 2 0 Bacterial transcriptional activator domain DUF3366 PF11846.3 gi|147920313|ref|YP_685916.1| - 0.042 13.7 0.1 3 7.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3366) TPR_10 PF13374.1 gi|147920313|ref|YP_685916.1| - 0.27 11.2 16.8 1.7 8.6 0.1 6.0 6 0 0 6 6 6 0 Tetratricopeptide repeat MacB_PCD PF12704.2 gi|147920314|ref|YP_685915.1| - 8.6e-41 140.0 2.3 8.6e-41 140.0 1.6 2.7 3 1 0 3 3 3 2 MacB-like periplasmic core domain FtsX PF02687.16 gi|147920314|ref|YP_685915.1| - 6e-21 74.4 12.4 6e-21 74.4 8.6 2.3 2 1 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|147920315|ref|YP_685914.1| - 7.3e-35 120.6 5.6 7.3e-35 120.6 3.9 2.8 2 1 2 4 4 4 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|147920315|ref|YP_685914.1| - 2.6e-23 82.0 10.6 2.6e-23 82.0 7.4 2.2 2 0 0 2 2 2 2 FtsX-like permease family LANC_like PF05147.8 gi|147920315|ref|YP_685914.1| - 0.14 10.7 0.0 0.25 9.8 0.0 1.3 1 0 0 1 1 1 0 Lanthionine synthetase C-like protein DUF4366 PF14283.1 gi|147920316|ref|YP_685913.1| - 6.7e-05 22.4 2.8 0.018 14.4 1.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4366) ABC_tran PF00005.22 gi|147920317|ref|YP_685912.1| - 2e-34 118.8 0.0 2.6e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920317|ref|YP_685912.1| - 1.1e-14 55.0 0.1 3.5e-13 50.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|147920317|ref|YP_685912.1| - 2e-06 27.1 0.3 0.0003 20.0 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|147920317|ref|YP_685912.1| - 0.00013 21.3 0.1 0.00023 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|147920317|ref|YP_685912.1| - 0.0002 20.6 0.1 0.0004 19.6 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|147920317|ref|YP_685912.1| - 0.00031 20.8 0.4 0.002 18.2 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147920317|ref|YP_685912.1| - 0.0015 18.5 0.1 0.0016 18.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|147920317|ref|YP_685912.1| - 0.0022 17.5 0.2 0.0048 16.3 0.1 1.5 2 0 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|147920317|ref|YP_685912.1| - 0.0048 17.2 0.4 0.1 12.9 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|147920317|ref|YP_685912.1| - 0.01 15.2 0.0 0.024 14.0 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|147920317|ref|YP_685912.1| - 0.011 16.5 0.2 0.02 15.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|147920317|ref|YP_685912.1| - 0.018 15.0 0.7 0.096 12.6 0.4 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|147920317|ref|YP_685912.1| - 0.028 13.4 0.0 1.9 7.4 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain RNA12 PF10443.4 gi|147920317|ref|YP_685912.1| - 0.032 12.7 0.0 0.042 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein Arch_ATPase PF01637.13 gi|147920317|ref|YP_685912.1| - 0.033 13.8 0.1 0.1 12.2 0.1 1.9 1 1 1 2 2 2 0 Archaeal ATPase KaiC PF06745.8 gi|147920317|ref|YP_685912.1| - 0.046 12.8 0.0 3.4 6.7 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.1 gi|147920317|ref|YP_685912.1| - 0.054 13.3 0.2 0.39 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|147920317|ref|YP_685912.1| - 0.077 13.3 0.5 0.1 12.9 0.3 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|147920317|ref|YP_685912.1| - 0.12 12.3 0.1 0.96 9.4 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|147920317|ref|YP_685912.1| - 0.15 10.9 0.2 0.33 9.7 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain RDD PF06271.7 gi|147920318|ref|YP_685911.1| - 4.4e-21 75.2 6.8 5.5e-21 74.8 4.7 1.1 1 0 0 1 1 1 1 RDD family PadR PF03551.9 gi|147920319|ref|YP_685910.1| - 9.3e-24 82.9 0.2 1.3e-23 82.4 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.7 gi|147920319|ref|YP_685910.1| - 0.011 13.8 0.0 0.047 11.8 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF505) HTH_34 PF13601.1 gi|147920319|ref|YP_685910.1| - 0.011 15.6 0.0 0.043 13.8 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.12 gi|147920319|ref|YP_685910.1| - 0.036 13.6 0.0 0.051 13.2 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix DUF2513 PF10711.4 gi|147920319|ref|YP_685910.1| - 0.055 13.5 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HisKA_2 PF07568.7 gi|147920320|ref|YP_685909.1| - 1.4e-30 104.9 1.2 3.4e-30 103.7 0.8 1.7 1 0 0 1 1 1 1 Histidine kinase GAF_2 PF13185.1 gi|147920320|ref|YP_685909.1| - 5.5e-25 88.5 0.0 1.5e-24 87.1 0.0 1.8 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.21 gi|147920320|ref|YP_685909.1| - 3.7e-10 39.5 0.0 9.9e-10 38.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|147920320|ref|YP_685909.1| - 1e-07 32.2 1.1 5.8e-07 29.8 0.2 2.2 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|147920320|ref|YP_685909.1| - 4.2e-07 29.7 0.0 2.5e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|147920320|ref|YP_685909.1| - 9.3e-07 28.9 0.0 2.7e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|147920320|ref|YP_685909.1| - 1.1e-06 28.2 0.0 4.3e-06 26.3 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|147920320|ref|YP_685909.1| - 0.0056 16.6 0.0 0.018 15.1 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|147920320|ref|YP_685909.1| - 0.0059 16.3 0.0 0.017 14.8 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|147920320|ref|YP_685909.1| - 0.016 15.5 0.0 0.052 13.9 0.0 1.9 1 0 0 1 1 1 0 PAS domain GAF PF01590.21 gi|147920320|ref|YP_685909.1| - 0.062 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 GAF domain Met_10 PF02475.11 gi|147920321|ref|YP_685908.1| - 1.6e-53 181.2 0.0 1.9e-53 181.0 0.0 1.0 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|147920321|ref|YP_685908.1| - 1.1e-10 41.5 0.1 2.8e-10 40.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|147920321|ref|YP_685908.1| - 4.2e-08 32.8 0.0 6.6e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|147920321|ref|YP_685908.1| - 7.4e-08 32.9 0.0 1.9e-07 31.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|147920321|ref|YP_685908.1| - 2.1e-07 30.6 0.0 3.5e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|147920321|ref|YP_685908.1| - 2.7e-05 23.8 0.0 4.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|147920321|ref|YP_685908.1| - 0.0011 18.6 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|147920321|ref|YP_685908.1| - 0.016 14.6 0.0 0.038 13.4 0.0 1.6 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) PRMT5 PF05185.11 gi|147920321|ref|YP_685908.1| - 0.021 13.7 0.0 0.031 13.1 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase MTS PF05175.9 gi|147920321|ref|YP_685908.1| - 0.038 13.3 0.0 0.08 12.3 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|147920321|ref|YP_685908.1| - 0.13 13.1 0.0 0.37 11.6 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain SDH_alpha PF03313.10 gi|147920322|ref|YP_685905.1| - 1.1e-58 198.5 12.1 1.8e-58 197.8 8.4 1.3 1 1 0 1 1 1 1 Serine dehydratase alpha chain HsbA PF12296.3 gi|147920322|ref|YP_685905.1| - 0.037 13.8 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 Hydrophobic surface binding protein A DUF3619 PF12279.3 gi|147920322|ref|YP_685905.1| - 0.13 12.3 0.4 0.29 11.2 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) Bac_luciferase PF00296.15 gi|147920323|ref|YP_685904.1| - 3.6e-64 216.8 1.0 4.5e-64 216.4 0.7 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase 7tm_3 PF00003.17 gi|147920324|ref|YP_685903.1| - 0.0033 16.7 1.9 0.0064 15.8 0.1 1.8 1 1 1 2 2 2 1 7 transmembrane sweet-taste receptor of 3 GCPR DUF3742 PF12553.3 gi|147920324|ref|YP_685903.1| - 0.14 12.6 0.1 0.4 11.1 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) YrhC PF14143.1 gi|147920324|ref|YP_685903.1| - 0.61 10.0 6.8 0.065 13.1 0.7 2.4 3 0 0 3 3 3 0 YrhC-like protein DUF4332 PF14229.1 gi|147920325|ref|YP_685902.1| - 1.6e-21 76.4 0.0 2.6e-19 69.3 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4332) HHH_5 PF14520.1 gi|147920325|ref|YP_685902.1| - 7.9e-06 25.9 0.2 0.077 13.1 0.0 3.1 2 1 1 3 3 3 2 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|147920325|ref|YP_685902.1| - 9.3e-05 22.2 0.0 0.17 11.8 0.0 2.5 1 1 0 2 2 2 2 Pathogenicity locus TfoX_C PF04994.8 gi|147920325|ref|YP_685902.1| - 0.0012 18.6 0.0 2.3 8.1 0.0 2.5 2 0 0 2 2 2 2 TfoX C-terminal domain TPPII PF12580.3 gi|147920325|ref|YP_685902.1| - 0.077 12.3 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Tripeptidyl peptidase II AAA_14 PF13173.1 gi|147920326|ref|YP_685901.1| - 1e-30 106.2 0.0 2.7e-30 104.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.1 gi|147920326|ref|YP_685901.1| - 2.9e-11 43.4 0.0 4.2e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) Arch_ATPase PF01637.13 gi|147920326|ref|YP_685901.1| - 9.6e-07 28.7 0.0 0.00048 19.9 0.0 3.0 3 0 0 3 3 3 1 Archaeal ATPase AAA_17 PF13207.1 gi|147920326|ref|YP_685901.1| - 0.00021 22.1 0.0 0.00074 20.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147920326|ref|YP_685901.1| - 0.0009 19.2 0.0 0.0037 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DAP3 PF10236.4 gi|147920326|ref|YP_685901.1| - 0.02 13.8 0.0 0.045 12.6 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_18 PF13238.1 gi|147920326|ref|YP_685901.1| - 0.032 14.5 0.0 0.096 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain GPDPase_memb PF10110.4 gi|147920326|ref|YP_685901.1| - 0.052 12.9 0.0 0.47 9.8 0.1 2.1 2 0 0 2 2 2 0 Membrane domain of glycerophosphoryl diester phosphodiesterase AAA PF00004.24 gi|147920326|ref|YP_685901.1| - 0.12 12.6 0.1 1.8 8.8 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) HATPase_c PF02518.21 gi|147920327|ref|YP_685900.1| - 3.2e-19 68.6 0.1 5.7e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147920327|ref|YP_685900.1| - 4.4e-08 33.1 0.0 7.4e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|147920327|ref|YP_685900.1| - 1.2e-07 32.0 0.0 1.8e-06 28.2 0.0 2.5 3 0 0 3 3 3 1 PAS domain HATPase_c_5 PF14501.1 gi|147920327|ref|YP_685900.1| - 0.00048 19.7 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|147920327|ref|YP_685900.1| - 0.0045 16.7 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147920327|ref|YP_685900.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TrkA_N PF02254.13 gi|147920328|ref|YP_685899.1| - 2.3e-21 75.9 0.0 1.1e-20 73.7 0.0 2.2 3 0 0 3 3 3 1 TrkA-N domain DHH PF01368.15 gi|147920328|ref|YP_685899.1| - 1.5e-18 66.7 0.0 4.7e-18 65.2 0.0 1.8 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|147920328|ref|YP_685899.1| - 3.1e-11 42.8 0.2 6.8e-11 41.7 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain Saccharop_dh PF03435.13 gi|147920328|ref|YP_685899.1| - 0.00041 19.4 0.0 0.00069 18.7 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|147920328|ref|YP_685899.1| - 0.0019 18.5 0.0 0.006 16.9 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|147920328|ref|YP_685899.1| - 0.0036 17.6 0.0 0.07 13.4 0.0 2.6 3 0 0 3 3 2 1 XdhC Rossmann domain NAD_binding_8 PF13450.1 gi|147920328|ref|YP_685899.1| - 0.011 15.7 0.0 0.044 13.8 0.0 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|147920328|ref|YP_685899.1| - 0.013 14.8 0.0 0.025 13.9 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.15 gi|147920328|ref|YP_685899.1| - 0.019 15.0 0.0 0.1 12.6 0.0 2.2 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|147920328|ref|YP_685899.1| - 0.021 14.5 0.0 0.055 13.2 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.9 gi|147920328|ref|YP_685899.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|147920328|ref|YP_685899.1| - 0.034 13.5 0.0 0.058 12.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|147920328|ref|YP_685899.1| - 0.056 12.3 0.2 0.17 10.7 0.1 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|147920328|ref|YP_685899.1| - 0.07 13.3 0.0 0.22 11.8 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding HTH_20 PF12840.2 gi|147920329|ref|YP_685898.1| - 5.9e-11 41.9 0.0 9.7e-11 41.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|147920329|ref|YP_685898.1| - 1.5e-08 33.8 0.1 2.5e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|147920329|ref|YP_685898.1| - 2.2e-06 27.2 0.3 3.9e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|147920329|ref|YP_685898.1| - 7e-06 25.6 0.0 1.3e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|147920329|ref|YP_685898.1| - 1.8e-05 24.3 0.0 3.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF742 PF05331.6 gi|147920329|ref|YP_685898.1| - 3.7e-05 23.2 0.0 6.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_27 PF13463.1 gi|147920329|ref|YP_685898.1| - 0.00011 22.4 0.0 0.00022 21.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|147920329|ref|YP_685898.1| - 0.00035 20.0 0.3 0.00049 19.5 0.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.14 gi|147920329|ref|YP_685898.1| - 0.00068 19.5 0.1 0.0014 18.5 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|147920329|ref|YP_685898.1| - 0.0011 18.6 0.1 0.002 17.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|147920329|ref|YP_685898.1| - 0.0012 18.4 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain EAP30 PF04157.11 gi|147920329|ref|YP_685898.1| - 0.0015 17.7 0.0 0.0024 17.0 0.0 1.3 1 0 0 1 1 1 1 EAP30/Vps36 family DUF2250 PF10007.4 gi|147920329|ref|YP_685898.1| - 0.0093 15.8 0.1 0.014 15.2 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4_2 PF08281.7 gi|147920329|ref|YP_685898.1| - 0.012 15.0 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_45 PF14947.1 gi|147920329|ref|YP_685898.1| - 0.014 15.1 0.2 0.025 14.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_23 PF13384.1 gi|147920329|ref|YP_685898.1| - 0.04 13.5 0.0 0.083 12.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Ftsk_gamma PF09397.5 gi|147920329|ref|YP_685898.1| - 0.12 12.1 0.0 0.33 10.6 0.0 1.8 1 1 1 2 2 2 0 Ftsk gamma domain CarboxypepD_reg PF13620.1 gi|147920330|ref|YP_685897.1| - 1.4e-13 50.6 1.5 1.3e-06 28.4 0.1 2.6 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|147920330|ref|YP_685897.1| - 1.9e-12 46.7 2.2 1e-05 25.1 0.4 2.5 2 0 0 2 2 2 2 Cna protein B-type domain DUF2012 PF09430.5 gi|147920330|ref|YP_685897.1| - 0.00054 19.7 0.1 0.28 11.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2012) MG1 PF11974.3 gi|147920330|ref|YP_685897.1| - 0.0012 19.3 0.1 0.15 12.5 0.0 2.3 1 1 1 2 2 2 1 Alpha-2-macroglobulin MG1 domain DUF4198 PF10670.4 gi|147920330|ref|YP_685897.1| - 0.0075 16.2 0.2 0.17 11.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4198) fn3_3 PF14686.1 gi|147920330|ref|YP_685897.1| - 0.018 15.1 1.4 1.2 9.2 0.1 2.6 2 1 1 3 3 3 0 Polysaccharide lyase family 4, domain II PPC PF04151.10 gi|147920330|ref|YP_685897.1| - 0.26 12.3 2.4 0.72 10.8 0.2 2.4 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain Lactamase_B_2 PF12706.2 gi|147920331|ref|YP_685896.1| - 1.9e-08 34.1 0.1 7e-08 32.2 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147920331|ref|YP_685896.1| - 0.00066 19.3 3.8 0.002 17.8 2.5 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|147920331|ref|YP_685896.1| - 0.013 15.2 0.1 0.024 14.3 0.1 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Thioredoxin_3 PF13192.1 gi|147920332|ref|YP_685895.1| - 0.3 10.9 3.5 3.7 7.4 2.4 2.1 1 1 0 1 1 1 0 Thioredoxin domain tRNA-synt_2b PF00587.20 gi|147920334|ref|YP_685893.1| - 6.2e-55 185.4 0.0 8.5e-55 184.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|147920334|ref|YP_685893.1| - 6.3e-22 77.3 0.0 1.2e-21 76.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain Zn-ribbon_8 PF09723.5 gi|147920334|ref|YP_685893.1| - 0.06 13.3 0.3 3.7 7.5 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|147920334|ref|YP_685893.1| - 0.19 11.0 0.9 0.41 10.0 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding DUF2453 PF10507.4 gi|147920335|ref|YP_685892.1| - 0.19 11.5 3.6 9.3 6.1 0.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2453) DUF4418 PF14387.1 gi|147920335|ref|YP_685892.1| - 0.8 9.4 8.6 2 8.1 0.1 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4418) Methyltransf_11 PF08241.7 gi|147920336|ref|YP_685891.1| - 9.2e-24 83.7 0.0 1.3e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920336|ref|YP_685891.1| - 5.6e-19 68.1 0.0 7.4e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|147920336|ref|YP_685891.1| - 3.3e-16 59.8 0.0 4.9e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920336|ref|YP_685891.1| - 3.2e-15 56.0 0.0 3.8e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920336|ref|YP_685891.1| - 8.9e-14 51.6 0.0 1.4e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147920336|ref|YP_685891.1| - 7.5e-13 48.5 0.6 1.8e-12 47.3 0.4 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920336|ref|YP_685891.1| - 1.4e-12 47.9 0.0 2.2e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920336|ref|YP_685891.1| - 5.5e-11 42.4 0.0 8e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|147920336|ref|YP_685891.1| - 3.3e-07 29.6 0.0 4.6e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|147920336|ref|YP_685891.1| - 3.5e-07 29.7 0.0 6.2e-07 28.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|147920336|ref|YP_685891.1| - 7.8e-07 28.8 0.0 1.1e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|147920336|ref|YP_685891.1| - 1.4e-06 28.0 0.0 8.1e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|147920336|ref|YP_685891.1| - 0.00023 20.2 0.0 0.00034 19.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Met_10 PF02475.11 gi|147920336|ref|YP_685891.1| - 0.0014 18.2 0.0 0.0019 17.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_24 PF13578.1 gi|147920336|ref|YP_685891.1| - 0.0044 17.8 0.0 0.0065 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|147920336|ref|YP_685891.1| - 0.0086 15.2 0.0 0.012 14.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) ADH_zinc_N PF00107.21 gi|147920336|ref|YP_685891.1| - 0.0092 15.5 1.1 0.1 12.1 0.3 2.5 1 1 1 2 2 2 1 Zinc-binding dehydrogenase UPF0020 PF01170.13 gi|147920336|ref|YP_685891.1| - 0.012 15.2 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|147920336|ref|YP_685891.1| - 0.017 14.5 0.0 0.032 13.5 0.0 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.13 gi|147920336|ref|YP_685891.1| - 0.022 13.9 0.0 0.031 13.4 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase DUF2533 PF10752.4 gi|147920337|ref|YP_685890.1| - 0.16 12.3 0.3 0.19 12.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2533) ERCC4 PF02732.10 gi|147920338|ref|YP_685889.1| - 3.4e-27 94.9 0.1 1.2e-26 93.1 0.0 2.0 2 0 0 2 2 2 1 ERCC4 domain DEAD PF00270.24 gi|147920338|ref|YP_685889.1| - 4.1e-21 75.2 0.6 3.4e-20 72.2 0.0 2.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147920338|ref|YP_685889.1| - 2.9e-19 68.6 0.0 1.7e-18 66.2 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147920338|ref|YP_685889.1| - 2.9e-15 56.5 0.0 1.6e-14 54.1 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|147920338|ref|YP_685889.1| - 3e-13 49.7 2.3 1.5e-11 44.2 0.1 3.2 2 1 1 3 3 3 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|147920338|ref|YP_685889.1| - 7e-12 45.0 0.1 2.1e-11 43.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|147920338|ref|YP_685889.1| - 2.4e-05 23.7 0.5 0.00013 21.5 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.18 gi|147920338|ref|YP_685889.1| - 6.8e-05 21.8 0.2 0.00017 20.4 0.0 1.7 2 0 0 2 2 2 1 SNF2 family N-terminal domain 5_3_exonuc PF01367.15 gi|147920338|ref|YP_685889.1| - 0.046 13.9 0.0 0.32 11.2 0.0 2.3 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Acetyltransf_1 PF00583.19 gi|147920341|ref|YP_685886.1| - 8.6e-16 57.7 0.0 2.1e-15 56.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147920341|ref|YP_685886.1| - 8.1e-11 41.9 0.0 1.4e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147920341|ref|YP_685886.1| - 1.5e-07 31.0 0.0 2.8e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|147920341|ref|YP_685886.1| - 5.7e-07 29.6 0.0 1.5e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147920341|ref|YP_685886.1| - 2.1e-06 27.6 0.0 4.7e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147920341|ref|YP_685886.1| - 3.6e-05 23.7 0.0 8.8e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147920341|ref|YP_685886.1| - 0.0012 18.9 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147920341|ref|YP_685886.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3843 PF12954.2 gi|147920341|ref|YP_685886.1| - 0.021 13.9 0.0 0.027 13.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3843) Acetyltransf_CG PF14542.1 gi|147920341|ref|YP_685886.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Glycos_transf_1 PF00534.15 gi|147920342|ref|YP_685885.1| - 1.3e-44 151.6 0.0 2.2e-44 150.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147920342|ref|YP_685885.1| - 3.3e-41 140.9 0.0 5e-41 140.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|147920342|ref|YP_685885.1| - 9.8e-25 87.5 0.0 2.3e-23 83.0 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|147920342|ref|YP_685885.1| - 5.6e-22 78.3 0.0 9.6e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147920342|ref|YP_685885.1| - 1.3e-09 38.0 0.0 2.2e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|147920342|ref|YP_685885.1| - 1.4e-06 28.4 0.0 2.9e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|147920342|ref|YP_685885.1| - 0.00013 21.5 0.1 0.011 15.2 0.1 2.5 1 1 0 1 1 1 1 Starch synthase catalytic domain TatC PF00902.13 gi|147920343|ref|YP_685884.1| - 1.6e-47 161.7 17.9 2.1e-47 161.2 12.4 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) TrbI_Ftype PF09677.5 gi|147920343|ref|YP_685884.1| - 0.63 9.8 2.4 7.2 6.4 1.6 2.2 1 1 0 1 1 1 0 Type-F conjugative transfer system protein (TrbI_Ftype) DUF3325 PF11804.3 gi|147920343|ref|YP_685884.1| - 3.2 7.7 12.9 8.1 6.4 4.3 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3325) DDE_Tnp_ISL3 PF01610.12 gi|147920344|ref|YP_686053.1| - 3.3e-66 223.4 1.2 4.5e-66 222.9 0.8 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|147920344|ref|YP_686053.1| - 1.6e-14 52.7 0.0 4.3e-14 51.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.1 gi|147920344|ref|YP_686053.1| - 0.00011 22.1 9.8 0.00034 20.5 6.8 1.8 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|147920344|ref|YP_686053.1| - 0.017 14.6 0.0 0.017 14.6 0.0 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF746 PF05344.6 gi|147920344|ref|YP_686053.1| - 0.12 11.9 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) DUF72 PF01904.13 gi|147920345|ref|YP_685882.1| - 2.5e-54 184.4 0.0 2.9e-54 184.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 CBS PF00571.23 gi|147920346|ref|YP_685881.1| - 3.2e-30 103.6 2.2 3.7e-18 65.0 0.2 2.1 2 0 0 2 2 2 2 CBS domain CbiA PF01656.18 gi|147920347|ref|YP_685880.1| - 5.6e-29 100.9 0.0 7.3e-29 100.5 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|147920347|ref|YP_685880.1| - 2.5e-10 39.8 0.1 1.8e-09 37.0 0.1 1.9 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|147920347|ref|YP_685880.1| - 2.7e-10 40.3 0.0 5.2e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|147920347|ref|YP_685880.1| - 8.7e-08 31.6 0.1 0.0017 17.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|147920347|ref|YP_685880.1| - 1.4e-05 24.7 0.0 0.00017 21.2 0.0 2.6 3 1 0 3 3 3 1 AAA domain GTP_EFTU PF00009.22 gi|147920347|ref|YP_685880.1| - 3.1e-05 23.4 0.0 4.9e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain ArsA_ATPase PF02374.10 gi|147920347|ref|YP_685880.1| - 4.3e-05 22.7 0.4 7.3e-05 21.9 0.3 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.4 gi|147920347|ref|YP_685880.1| - 9.8e-05 22.1 0.0 0.00025 20.8 0.0 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like YhjQ PF06564.7 gi|147920347|ref|YP_685880.1| - 0.0033 16.8 0.0 0.011 15.1 0.0 1.7 1 1 0 1 1 1 1 YhjQ protein AAA_25 PF13481.1 gi|147920347|ref|YP_685880.1| - 0.074 12.4 0.2 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|147920347|ref|YP_685880.1| - 0.087 12.3 0.0 0.19 11.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|147920347|ref|YP_685880.1| - 0.16 10.9 0.1 0.33 9.8 0.0 1.5 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase polyprenyl_synt PF00348.12 gi|147920348|ref|YP_685879.1| - 1.1e-58 198.2 0.4 1.4e-58 197.8 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase U3_assoc_6 PF08640.6 gi|147920348|ref|YP_685879.1| - 0.083 12.6 0.7 8.5 6.2 0.0 2.4 2 0 0 2 2 2 0 U3 small nucleolar RNA-associated protein 6 AIRC PF00731.15 gi|147920349|ref|YP_685878.1| - 3.7e-24 84.7 5.5 3.7e-24 84.7 3.8 1.4 2 0 0 2 2 2 1 AIR carboxylase AF0941-like PF14591.1 gi|147920349|ref|YP_685878.1| - 0.16 11.9 0.7 0.31 11.0 0.4 1.5 1 1 0 1 1 1 0 AF0941-like GLTSCR1 PF15249.1 gi|147920350|ref|YP_685877.1| - 0.12 12.4 3.8 0.31 11.1 2.6 1.7 1 1 0 1 1 1 0 Glioma tumor suppressor candidate region Presenilin PF01080.12 gi|147920350|ref|YP_685877.1| - 6.3 5.5 5.6 7.4 5.2 3.9 1.0 1 0 0 1 1 1 0 Presenilin TATR PF03430.8 gi|147920350|ref|YP_685877.1| - 7.1 5.1 6.8 7.7 5.0 4.7 1.0 1 0 0 1 1 1 0 Trans-activating transcriptional regulator Spore_coat_CotO PF14153.1 gi|147920350|ref|YP_685877.1| - 9 5.6 9.4 11 5.3 6.5 1.2 1 0 0 1 1 1 0 Spore coat protein CotO DUF1282 PF06930.7 gi|147920351|ref|YP_685876.1| - 0.0022 17.7 4.7 0.0029 17.3 3.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF2910 PF11139.3 gi|147920351|ref|YP_685876.1| - 0.0022 17.1 0.4 0.0025 16.9 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2910) DUF627 PF04781.7 gi|147920351|ref|YP_685876.1| - 0.068 12.7 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF627) DUF460 PF04312.8 gi|147920352|ref|YP_685875.1| - 2.3e-51 172.9 0.3 5.2e-51 171.7 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) TMF_DNA_bd PF12329.3 gi|147920352|ref|YP_685875.1| - 0.00088 19.0 5.9 0.00088 19.0 4.1 3.0 2 0 0 2 2 2 1 TATA element modulatory factor 1 DNA binding Nup54 PF13874.1 gi|147920352|ref|YP_685875.1| - 0.0055 16.3 6.4 0.013 15.1 3.6 2.3 3 0 0 3 3 3 1 Nucleoporin complex subunit 54 IncA PF04156.9 gi|147920352|ref|YP_685875.1| - 0.018 14.6 15.2 0.087 12.4 10.6 2.1 1 1 0 1 1 1 0 IncA protein DUF641 PF04859.7 gi|147920352|ref|YP_685875.1| - 0.027 14.2 9.5 0.14 11.8 1.6 2.8 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) AAA_13 PF13166.1 gi|147920352|ref|YP_685875.1| - 0.027 12.9 5.6 0.05 12.0 3.8 1.3 1 0 0 1 1 1 0 AAA domain DivIC PF04977.10 gi|147920352|ref|YP_685875.1| - 0.053 13.0 14.6 0.27 10.7 0.8 3.3 2 0 0 2 2 2 0 Septum formation initiator APG6 PF04111.7 gi|147920352|ref|YP_685875.1| - 0.34 9.9 6.2 0.78 8.7 4.3 1.5 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF607 PF04678.8 gi|147920352|ref|YP_685875.1| - 0.4 10.5 1.9 26 4.6 0.4 3.3 4 0 0 4 4 4 0 Protein of unknown function, DUF607 DUF904 PF06005.7 gi|147920352|ref|YP_685875.1| - 1 9.6 13.3 2.6 8.3 0.4 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF904) DUF4140 PF13600.1 gi|147920352|ref|YP_685875.1| - 1.2 9.5 14.2 2.5 8.5 2.4 3.9 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) NPV_P10 PF05531.7 gi|147920352|ref|YP_685875.1| - 1.2 9.3 6.9 0.43 10.8 0.4 3.4 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF1635 PF07795.6 gi|147920352|ref|YP_685875.1| - 2.2 7.5 6.1 5.4 6.3 4.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1635) DUF972 PF06156.8 gi|147920352|ref|YP_685875.1| - 2.7 8.3 9.4 17 5.8 4.2 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) SlyX PF04102.7 gi|147920352|ref|YP_685875.1| - 4 7.8 11.3 14 6.1 4.7 2.8 1 1 1 2 2 2 0 SlyX FlaC_arch PF05377.6 gi|147920352|ref|YP_685875.1| - 4 7.4 9.0 7 6.6 0.3 3.9 4 1 1 5 5 5 0 Flagella accessory protein C (FlaC) Fib_alpha PF08702.5 gi|147920352|ref|YP_685875.1| - 6.5 6.8 10.8 12 6.0 5.8 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.14 gi|147920352|ref|YP_685875.1| - 8 4.1 5.9 15 3.2 4.1 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Atg14 PF10186.4 gi|147920352|ref|YP_685875.1| - 9.6 5.0 26.4 0.32 9.8 6.7 2.6 2 1 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|147920352|ref|YP_685875.1| - 9.9 5.9 11.4 8.6 6.1 5.4 2.5 2 0 0 2 2 2 0 Laminin Domain II DUF943 PF06092.7 gi|147920353|ref|YP_685874.1| - 0.12 11.6 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Enterobacterial putative membrane protein (DUF943) Glycos_transf_2 PF00535.21 gi|147920354|ref|YP_685873.1| - 3.2e-34 118.0 0.0 4.8e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147920354|ref|YP_685873.1| - 9.6e-23 81.1 0.0 2.6e-22 79.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|147920354|ref|YP_685873.1| - 9.5e-16 57.7 0.0 2.2e-09 36.8 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|147920354|ref|YP_685873.1| - 6.9e-12 45.4 0.0 1e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|147920354|ref|YP_685873.1| - 9.4e-11 41.3 0.0 1.3e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|147920354|ref|YP_685873.1| - 9.8e-05 22.5 0.0 0.00017 21.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_7C PF02709.9 gi|147920354|ref|YP_685873.1| - 0.00046 19.6 0.0 0.00085 18.7 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_5 PF13712.1 gi|147920354|ref|YP_685873.1| - 0.00091 18.5 0.0 0.78 8.9 0.0 2.2 1 1 1 2 2 2 2 Glycosyltransferase like family GNT-I PF03071.10 gi|147920354|ref|YP_685873.1| - 0.093 11.2 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 GNT-I family Hep_core_N PF08290.6 gi|147920355|ref|YP_685872.1| - 0.54 9.7 3.7 0.93 8.9 2.6 1.4 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger ApbE PF02424.10 gi|147920356|ref|YP_685871.1| - 2.9e-22 79.2 6.1 5.1e-22 78.3 4.2 1.3 1 1 0 1 1 1 1 ApbE family Fer4 PF00037.22 gi|147920357|ref|YP_685870.1| - 2.4e-16 58.5 15.0 1e-08 34.3 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147920357|ref|YP_685870.1| - 3.7e-16 59.2 39.9 1.2e-09 38.3 11.0 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147920357|ref|YP_685870.1| - 4e-14 51.7 17.2 3.1e-07 29.9 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147920357|ref|YP_685870.1| - 1.3e-11 44.5 10.3 1.2e-06 28.6 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147920357|ref|YP_685870.1| - 1.4e-11 44.0 24.2 1.5e-08 34.3 9.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147920357|ref|YP_685870.1| - 4.7e-11 42.5 6.1 1.6e-05 24.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920357|ref|YP_685870.1| - 8.8e-11 41.0 16.8 1.5e-05 24.6 2.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147920357|ref|YP_685870.1| - 1.9e-09 38.1 12.0 4.8e-05 24.0 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147920357|ref|YP_685870.1| - 2.1e-08 33.8 16.0 0.00036 20.3 3.4 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920357|ref|YP_685870.1| - 2.6e-06 27.7 16.0 0.0033 17.8 2.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920357|ref|YP_685870.1| - 4.4e-06 26.5 19.9 0.00038 20.5 3.0 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147920357|ref|YP_685870.1| - 6.5e-06 26.3 23.1 0.00093 19.5 5.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|147920357|ref|YP_685870.1| - 1.3e-05 25.0 8.9 2.1e-05 24.3 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147920357|ref|YP_685870.1| - 4e-05 23.8 14.1 0.02 15.2 1.6 2.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147920357|ref|YP_685870.1| - 0.00017 21.9 13.9 0.054 13.8 1.3 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain NIL PF09383.5 gi|147920357|ref|YP_685870.1| - 0.00039 19.9 0.0 0.00052 19.5 0.0 1.2 1 0 0 1 1 1 1 NIL domain Fer4_15 PF13459.1 gi|147920357|ref|YP_685870.1| - 0.00051 20.5 14.9 0.019 15.5 1.4 3.0 2 1 0 2 2 2 2 4Fe-4S single cluster domain NTPase_P4 PF11602.3 gi|147920357|ref|YP_685870.1| - 0.078 11.9 0.1 0.082 11.8 0.0 1.1 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 DUF3133 PF11331.3 gi|147920357|ref|YP_685870.1| - 0.24 10.9 5.0 2.7 7.6 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) c-SKI_SMAD_bind PF08782.5 gi|147920357|ref|YP_685870.1| - 2 8.6 9.2 4.5 7.4 1.1 2.2 1 1 1 2 2 2 0 c-SKI Smad4 binding domain DNA_RNApol_7kD PF03604.8 gi|147920357|ref|YP_685870.1| - 3.8 7.0 6.5 3.4 7.2 0.1 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF39 PF01837.11 gi|147920358|ref|YP_685869.1| - 4.8e-150 498.9 0.2 6.2e-150 498.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF39 CBS PF00571.23 gi|147920358|ref|YP_685869.1| - 9.3e-29 98.9 5.3 1.5e-13 50.3 0.3 2.7 2 0 0 2 2 2 2 CBS domain MarC PF01914.12 gi|147920359|ref|YP_685868.1| - 4.5e-54 182.6 16.6 5.1e-54 182.4 11.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF485 PF04341.7 gi|147920359|ref|YP_685868.1| - 0.086 12.5 0.1 0.086 12.5 0.1 2.5 2 1 1 3 3 3 0 Protein of unknown function, DUF485 YrvL PF14184.1 gi|147920359|ref|YP_685868.1| - 0.89 9.3 8.6 2.2 8.1 1.2 2.4 2 0 0 2 2 2 0 Regulatory protein YrvL DUF3087 PF11286.3 gi|147920359|ref|YP_685868.1| - 9.4 5.4 6.8 1.8 7.7 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) TBP PF00352.16 gi|147920361|ref|YP_685866.1| - 4.7e-66 218.1 0.0 8.9e-32 108.3 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|147920361|ref|YP_685866.1| - 2.5e-05 24.2 0.0 0.11 12.5 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF1390 PF07150.6 gi|147920361|ref|YP_685866.1| - 0.0011 18.4 0.1 0.005 16.2 0.1 1.9 1 1 0 2 2 2 1 Protein of unknown function (DUF1390) CENP-F_C_Rb_bdg PF10490.4 gi|147920361|ref|YP_685866.1| - 0.083 12.2 0.3 9.8 5.5 0.1 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 PAS_9 PF13426.1 gi|147920362|ref|YP_685865.1| - 1.1e-25 90.0 0.0 4.7e-16 59.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|147920362|ref|YP_685865.1| - 8.7e-24 83.4 0.6 1.6e-13 50.5 0.1 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|147920362|ref|YP_685865.1| - 1e-21 76.7 0.2 5.5e-21 74.3 0.0 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147920362|ref|YP_685865.1| - 3.3e-19 68.9 0.0 4.1e-15 55.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|147920362|ref|YP_685865.1| - 5.9e-17 61.4 0.6 1.8e-13 50.2 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|147920362|ref|YP_685865.1| - 7.1e-08 32.0 0.0 2.2e-05 24.1 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|147920362|ref|YP_685865.1| - 0.00014 21.6 0.0 0.00051 19.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|147920362|ref|YP_685865.1| - 0.0029 17.5 0.0 0.73 9.8 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|147920362|ref|YP_685865.1| - 0.0032 17.4 0.6 0.078 12.9 0.0 3.2 3 1 1 4 4 4 1 PAS fold WEMBL PF05701.6 gi|147920362|ref|YP_685865.1| - 0.0059 15.1 2.7 0.0067 14.9 0.1 1.9 2 0 0 2 2 2 1 Weak chloroplast movement under blue light Jiv90 PF14901.1 gi|147920362|ref|YP_685865.1| - 0.058 13.3 0.1 0.21 11.6 0.0 1.9 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone HATPase_c_3 PF13589.1 gi|147920362|ref|YP_685865.1| - 0.059 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Spectrin PF00435.16 gi|147920362|ref|YP_685865.1| - 0.11 12.8 1.3 5 7.4 0.1 3.0 3 0 0 3 3 3 0 Spectrin repeat Lzipper-MIP1 PF14389.1 gi|147920362|ref|YP_685865.1| - 0.35 10.9 3.6 1.4 9.0 0.3 3.0 3 0 0 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 HrpB7 PF09486.5 gi|147920362|ref|YP_685865.1| - 0.67 9.8 11.0 3.9 7.4 3.4 2.5 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF4013 PF13197.1 gi|147920364|ref|YP_685863.1| - 3.2e-24 85.1 21.7 3.2e-24 85.1 15.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) PocR PF10114.4 gi|147920366|ref|YP_685861.1| - 4.6e-61 204.9 0.0 7.8e-61 204.2 0.0 1.4 1 0 0 1 1 1 1 Sensory domain found in PocR PAS_9 PF13426.1 gi|147920366|ref|YP_685861.1| - 2.9e-32 111.1 0.1 2.4e-12 47.1 0.0 4.5 5 0 0 5 5 4 3 PAS domain PAS_4 PF08448.5 gi|147920366|ref|YP_685861.1| - 7.3e-30 103.2 0.1 4.1e-10 39.6 0.0 4.0 3 1 0 3 3 3 3 PAS fold PAS PF00989.19 gi|147920366|ref|YP_685861.1| - 2.3e-24 85.3 0.1 7.7e-10 38.5 0.0 4.1 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|147920366|ref|YP_685861.1| - 8.4e-24 83.4 0.4 3.2e-17 62.4 0.1 5.1 5 1 0 5 5 5 2 PAS fold PAS_8 PF13188.1 gi|147920366|ref|YP_685861.1| - 8.7e-14 50.7 1.3 2.4e-08 33.5 0.0 3.2 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|147920366|ref|YP_685861.1| - 9.4e-06 25.6 4.4 7.7e-05 22.6 0.1 4.1 3 2 0 3 3 3 1 PAS fold TBPIP PF07106.8 gi|147920366|ref|YP_685861.1| - 0.00013 21.5 0.0 0.00035 20.1 0.0 1.7 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) PAS_10 PF13596.1 gi|147920366|ref|YP_685861.1| - 0.0064 16.7 0.9 8.7 6.6 0.0 3.8 4 1 0 4 4 4 1 PAS domain HTH_IclR PF09339.5 gi|147920366|ref|YP_685861.1| - 0.012 15.1 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|147920366|ref|YP_685861.1| - 0.022 14.3 1.4 0.067 12.7 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|147920366|ref|YP_685861.1| - 0.028 14.1 0.3 0.13 11.9 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF3867 PF12983.2 gi|147920366|ref|YP_685861.1| - 0.087 12.7 0.1 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) MarR_2 PF12802.2 gi|147920367|ref|YP_685860.1| - 1.2e-06 28.0 0.0 3.7e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|147920367|ref|YP_685860.1| - 7e-06 25.6 0.0 1.7e-05 24.4 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|147920367|ref|YP_685860.1| - 1.7e-05 25.0 0.1 6.8e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain SgrR_N PF12793.2 gi|147920367|ref|YP_685860.1| - 0.0065 16.4 0.1 0.014 15.4 0.1 1.7 1 1 0 1 1 1 1 Sugar transport-related sRNA regulator N-term HTH_Crp_2 PF13545.1 gi|147920367|ref|YP_685860.1| - 0.0077 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|147920367|ref|YP_685860.1| - 0.046 13.2 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Sigma70_r3 PF04539.11 gi|147920367|ref|YP_685860.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 TrmB PF01978.14 gi|147920367|ref|YP_685860.1| - 0.12 12.0 0.1 14 5.4 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Flavodoxin_3 PF12641.2 gi|147920368|ref|YP_685859.1| - 1.1e-17 63.8 0.2 1.5e-17 63.4 0.1 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|147920368|ref|YP_685859.1| - 1.2e-09 38.3 0.2 1.4e-09 38.0 0.1 1.2 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_4 PF12682.2 gi|147920368|ref|YP_685859.1| - 6e-09 35.4 0.1 0.00014 21.2 0.0 2.1 1 1 1 2 2 2 2 Flavodoxin Flavodoxin_5 PF12724.2 gi|147920368|ref|YP_685859.1| - 1.4e-07 31.6 0.0 2.3e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Wzz PF02706.10 gi|147920369|ref|YP_685858.1| - 2.3 8.0 4.6 0.37 10.5 0.3 1.9 2 0 0 2 2 2 0 Chain length determinant protein Acetyltransf_1 PF00583.19 gi|147920371|ref|YP_685856.1| - 4.1e-14 52.3 0.1 6.2e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|147920371|ref|YP_685856.1| - 3.1e-09 36.9 0.1 4.4e-09 36.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147920371|ref|YP_685856.1| - 8.8e-09 35.4 0.1 1.4e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147920371|ref|YP_685856.1| - 2.3e-07 30.7 0.0 3e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147920371|ref|YP_685856.1| - 2.8e-07 30.2 0.0 4.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|147920371|ref|YP_685856.1| - 0.00041 20.3 0.1 0.0005 20.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147920371|ref|YP_685856.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147920371|ref|YP_685856.1| - 0.0091 16.1 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147920371|ref|YP_685856.1| - 0.064 13.1 0.1 0.12 12.2 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147920371|ref|YP_685856.1| - 0.1 12.4 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DNA_binding_1 PF01035.15 gi|147920372|ref|YP_685855.1| - 9.6e-31 105.3 0.0 1.3e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Exo_endo_phos PF03372.18 gi|147920374|ref|YP_685852.1| - 2.9e-29 102.7 0.0 3.3e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|147920374|ref|YP_685852.1| - 2e-12 46.7 0.0 3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase DUF3108 PF11306.3 gi|147920375|ref|YP_685851.1| - 5.4e-10 39.3 2.7 2.9e-09 36.9 1.8 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3108) DUF4412 PF14371.1 gi|147920375|ref|YP_685851.1| - 0.00017 21.9 7.4 0.0013 19.1 0.2 3.0 2 1 1 3 3 3 2 Domain of unknown function (DUF4412) LPAM_1 PF08139.7 gi|147920375|ref|YP_685851.1| - 1.3 9.3 3.8 7 7.0 2.6 2.1 1 1 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF4412 PF14371.1 gi|147920376|ref|YP_685850.1| - 0.00027 21.3 0.8 0.09 13.3 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4412) Myco_19_kDa PF05481.7 gi|147920376|ref|YP_685850.1| - 0.014 15.2 0.3 0.014 15.2 0.2 2.1 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen YiaAB PF05360.9 gi|147920382|ref|YP_685843.1| - 0.11 12.0 0.2 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 yiaA/B two helix domain zf-DHHC PF01529.15 gi|147920383|ref|YP_685842.1| - 4.7 6.5 11.1 1.1 8.5 2.5 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase ABC_tran PF00005.22 gi|147920385|ref|YP_685840.1| - 4.1e-38 130.7 0.0 8.8e-19 68.1 0.0 2.8 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|147920385|ref|YP_685840.1| - 5.2e-15 55.2 6.1 8.8e-08 31.6 0.6 4.2 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|147920385|ref|YP_685840.1| - 5.5e-14 52.8 0.6 0.0035 17.3 0.2 4.2 2 2 1 3 3 3 3 AAA domain RLI PF04068.10 gi|147920385|ref|YP_685840.1| - 1.2e-11 44.0 4.2 2.9e-11 42.7 2.9 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|147920385|ref|YP_685840.1| - 1.4e-08 35.6 0.1 0.00077 20.2 0.0 2.8 2 1 0 2 2 2 2 AAA domain Fer4 PF00037.22 gi|147920385|ref|YP_685840.1| - 3.6e-07 29.5 4.5 3.6e-07 29.5 3.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|147920385|ref|YP_685840.1| - 8.2e-07 28.6 0.2 0.0032 16.9 0.1 3.0 2 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|147920385|ref|YP_685840.1| - 8.1e-06 25.1 0.1 0.098 11.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|147920385|ref|YP_685840.1| - 8.1e-06 25.9 0.1 0.19 11.9 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_15 PF13175.1 gi|147920385|ref|YP_685840.1| - 3.4e-05 23.0 0.1 0.0064 15.5 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_29 PF13555.1 gi|147920385|ref|YP_685840.1| - 7.3e-05 22.2 0.7 0.14 11.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|147920385|ref|YP_685840.1| - 8.4e-05 22.8 0.3 0.65 10.2 0.0 3.2 2 1 0 2 2 2 2 AAA domain Fer4_6 PF12837.2 gi|147920385|ref|YP_685840.1| - 0.00014 21.5 12.5 0.00049 19.8 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.1 gi|147920385|ref|YP_685840.1| - 0.00021 21.4 0.2 0.15 12.2 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|147920385|ref|YP_685840.1| - 0.0003 20.9 0.0 1.2 9.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|147920385|ref|YP_685840.1| - 0.00048 20.0 0.0 0.66 9.9 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase Fer4_7 PF12838.2 gi|147920385|ref|YP_685840.1| - 0.00054 20.2 9.1 0.0013 19.0 6.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain NACHT PF05729.7 gi|147920385|ref|YP_685840.1| - 0.00071 19.2 0.0 0.038 13.6 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.1 gi|147920385|ref|YP_685840.1| - 0.00075 19.8 0.1 1.3 9.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4_10 PF13237.1 gi|147920385|ref|YP_685840.1| - 0.0021 17.8 2.2 0.0021 17.8 1.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Miro PF08477.8 gi|147920385|ref|YP_685840.1| - 0.0034 17.8 0.6 0.71 10.3 0.0 2.8 2 1 1 3 3 2 1 Miro-like protein Fer4_9 PF13187.1 gi|147920385|ref|YP_685840.1| - 0.0037 17.4 10.6 0.0086 16.3 7.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920385|ref|YP_685840.1| - 0.0043 16.8 3.3 0.0043 16.8 2.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920385|ref|YP_685840.1| - 0.0058 16.4 9.9 0.011 15.6 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF87 PF01935.12 gi|147920385|ref|YP_685840.1| - 0.0066 16.3 0.4 1.3 8.7 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|147920385|ref|YP_685840.1| - 0.0089 15.4 1.1 3 7.1 0.0 2.5 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|147920385|ref|YP_685840.1| - 0.009 15.8 0.5 3 7.6 0.0 3.1 4 0 0 4 4 2 1 AAA domain MobB PF03205.9 gi|147920385|ref|YP_685840.1| - 0.012 15.3 2.1 0.94 9.1 0.0 2.7 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|147920385|ref|YP_685840.1| - 0.014 15.2 0.0 6.1 6.8 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Fer4_16 PF13484.1 gi|147920385|ref|YP_685840.1| - 0.019 15.7 0.9 0.019 15.7 0.6 2.4 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain AAA_14 PF13173.1 gi|147920385|ref|YP_685840.1| - 0.019 14.8 0.5 8.9 6.2 0.0 3.2 3 1 0 3 3 3 0 AAA domain ArgK PF03308.11 gi|147920385|ref|YP_685840.1| - 0.027 13.2 1.2 3.3 6.4 0.1 2.2 2 0 0 2 2 2 0 ArgK protein Rad17 PF03215.10 gi|147920385|ref|YP_685840.1| - 0.028 13.1 0.0 0.18 10.4 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein SRP54 PF00448.17 gi|147920385|ref|YP_685840.1| - 0.029 13.7 0.4 3.7 6.9 0.0 2.6 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|147920385|ref|YP_685840.1| - 0.042 13.8 0.1 5.3 6.9 0.0 2.5 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|147920385|ref|YP_685840.1| - 0.058 12.2 0.3 0.57 8.9 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain Dynamin_N PF00350.18 gi|147920385|ref|YP_685840.1| - 0.071 12.9 0.9 3.7 7.3 0.1 3.0 3 0 0 3 3 3 0 Dynamin family AAA_24 PF13479.1 gi|147920385|ref|YP_685840.1| - 0.086 12.4 0.6 6.3 6.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain VirE PF05272.6 gi|147920385|ref|YP_685840.1| - 0.093 12.1 0.1 9.5 5.6 0.0 2.3 2 0 0 2 2 2 0 Virulence-associated protein E AAA_5 PF07728.9 gi|147920385|ref|YP_685840.1| - 0.16 11.6 0.1 17 5.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|147920385|ref|YP_685840.1| - 0.16 11.6 1.5 16 5.1 0.0 3.0 3 0 0 3 3 3 0 NTPase Fer4_8 PF13183.1 gi|147920385|ref|YP_685840.1| - 0.41 10.6 6.2 1.8 8.6 4.6 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920385|ref|YP_685840.1| - 1.7 9.1 12.7 0.46 10.9 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147920385|ref|YP_685840.1| - 5.5 7.4 9.2 0.35 11.2 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147920385|ref|YP_685840.1| - 5.7 7.7 15.0 0.45 11.1 3.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147920385|ref|YP_685840.1| - 6.2 7.4 8.7 1.9 9.0 0.8 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|147920385|ref|YP_685840.1| - 7.4 7.0 11.2 1.4 9.3 4.3 2.3 2 1 1 3 3 1 0 4Fe-4S dicluster domain F420_oxidored PF03807.12 gi|147920388|ref|YP_685837.1| - 2.5e-20 72.7 0.5 3.7e-20 72.1 0.3 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|147920388|ref|YP_685837.1| - 1.9e-05 24.4 0.1 2.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|147920388|ref|YP_685837.1| - 0.00052 20.0 0.5 0.023 14.6 0.3 2.4 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|147920388|ref|YP_685837.1| - 0.00089 19.3 0.2 0.0015 18.5 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|147920388|ref|YP_685837.1| - 0.0084 15.5 0.1 0.012 15.0 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.19 gi|147920388|ref|YP_685837.1| - 0.011 15.9 0.2 0.023 15.0 0.1 1.5 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|147920388|ref|YP_685837.1| - 0.015 14.2 0.1 0.022 13.7 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase adh_short PF00106.20 gi|147920388|ref|YP_685837.1| - 0.016 15.1 0.7 0.025 14.4 0.1 1.5 2 0 0 2 2 2 0 short chain dehydrogenase 3HCDH_N PF02737.13 gi|147920388|ref|YP_685837.1| - 0.036 13.7 0.3 0.053 13.1 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.12 gi|147920388|ref|YP_685837.1| - 0.12 11.2 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase HhH-GPD PF00730.20 gi|147920389|ref|YP_685836.1| - 6.9e-14 52.0 0.0 8.9e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|147920389|ref|YP_685836.1| - 0.00045 19.7 0.0 0.0015 18.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif ParA PF10609.4 gi|147920390|ref|YP_685835.1| - 4e-33 113.1 0.4 9.5e-33 111.9 0.3 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|147920390|ref|YP_685835.1| - 1.3e-18 67.0 0.0 2e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|147920390|ref|YP_685835.1| - 3e-08 33.7 0.1 2.5e-07 30.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain ArsA_ATPase PF02374.10 gi|147920390|ref|YP_685835.1| - 5.8e-08 32.1 0.7 1.2e-07 31.1 0.2 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|147920390|ref|YP_685835.1| - 2.7e-06 26.6 0.0 5.6e-06 25.6 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|147920390|ref|YP_685835.1| - 0.00029 20.4 0.4 0.076 12.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|147920390|ref|YP_685835.1| - 0.00035 19.8 0.3 0.0032 16.7 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArgK PF03308.11 gi|147920390|ref|YP_685835.1| - 0.00092 18.0 0.2 0.0014 17.4 0.1 1.2 1 0 0 1 1 1 1 ArgK protein DUF258 PF03193.11 gi|147920390|ref|YP_685835.1| - 0.0011 18.2 0.2 0.0017 17.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|147920390|ref|YP_685835.1| - 0.0012 18.3 0.0 0.0034 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|147920390|ref|YP_685835.1| - 0.0019 17.6 0.4 0.0069 15.7 0.1 1.8 2 0 0 2 2 2 1 YhjQ protein AAA_10 PF12846.2 gi|147920390|ref|YP_685835.1| - 0.011 15.2 0.2 0.03 13.7 0.2 1.7 2 0 0 2 2 2 0 AAA-like domain DUF853 PF05872.7 gi|147920390|ref|YP_685835.1| - 0.046 12.0 0.1 0.07 11.4 0.1 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) VirC1 PF07015.6 gi|147920390|ref|YP_685835.1| - 0.067 12.2 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein SRP54 PF00448.17 gi|147920390|ref|YP_685835.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|147920390|ref|YP_685835.1| - 0.095 12.2 0.2 0.31 10.6 0.1 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain MobB PF03205.9 gi|147920390|ref|YP_685835.1| - 0.097 12.3 0.1 0.23 11.1 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|147920390|ref|YP_685835.1| - 0.12 11.2 0.2 0.19 10.6 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|147920390|ref|YP_685835.1| - 0.15 10.8 0.5 0.21 10.3 0.4 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF2892 PF11127.3 gi|147920391|ref|YP_685834.1| - 7.1e-15 54.5 2.1 7.9e-15 54.4 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) EIID-AGA PF03613.9 gi|147920391|ref|YP_685834.1| - 0.045 12.6 1.0 0.049 12.5 0.7 1.0 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component PQQ_2 PF13360.1 gi|147920392|ref|YP_685833.1| - 2.2e-15 56.7 0.0 7.1e-08 32.2 0.0 3.4 3 1 0 3 3 3 3 PQQ-like domain HTH_24 PF13412.1 gi|147920392|ref|YP_685833.1| - 8.7e-15 53.8 0.0 1.5e-10 40.2 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|147920392|ref|YP_685833.1| - 4.1e-09 35.9 0.1 3.9e-05 23.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|147920392|ref|YP_685833.1| - 5.8e-09 35.4 1.2 1.8e-07 30.7 0.0 3.2 3 1 0 3 3 2 1 MarR family HTH_23 PF13384.1 gi|147920392|ref|YP_685833.1| - 1e-07 31.3 0.0 0.00042 19.8 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain HTH_20 PF12840.2 gi|147920392|ref|YP_685833.1| - 5.8e-07 29.2 0.2 0.015 15.1 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain PQQ_3 PF13570.1 gi|147920392|ref|YP_685833.1| - 8e-07 29.1 7.0 5.6e-05 23.2 0.2 5.5 5 1 0 5 5 5 1 PQQ-like domain MarR PF01047.17 gi|147920392|ref|YP_685833.1| - 4e-06 26.4 0.0 6.9e-05 22.4 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|147920392|ref|YP_685833.1| - 1.2e-05 24.7 0.2 0.00025 20.5 0.0 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|147920392|ref|YP_685833.1| - 2e-05 24.1 0.0 0.00024 20.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|147920392|ref|YP_685833.1| - 2.1e-05 23.8 0.0 0.0035 16.7 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|147920392|ref|YP_685833.1| - 3.3e-05 23.3 0.0 9.4e-05 21.8 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_3 PF01381.17 gi|147920392|ref|YP_685833.1| - 0.00019 21.2 0.1 0.0011 18.7 0.0 2.2 3 0 0 3 3 2 1 Helix-turn-helix HTH_11 PF08279.7 gi|147920392|ref|YP_685833.1| - 0.00022 20.7 0.2 0.00089 18.8 0.0 2.0 2 0 0 2 2 2 1 HTH domain GerE PF00196.14 gi|147920392|ref|YP_685833.1| - 0.00027 20.1 0.1 0.0019 17.4 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family PQQ PF01011.16 gi|147920392|ref|YP_685833.1| - 0.00072 18.9 3.1 15 5.3 0.0 5.4 6 0 0 6 6 5 0 PQQ enzyme repeat HTH_Crp_2 PF13545.1 gi|147920392|ref|YP_685833.1| - 0.0024 17.6 0.0 0.0053 16.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|147920392|ref|YP_685833.1| - 0.0049 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator LexA_DNA_bind PF01726.11 gi|147920392|ref|YP_685833.1| - 0.0055 16.2 0.0 0.014 14.9 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain FaeA PF04703.7 gi|147920392|ref|YP_685833.1| - 0.0091 16.1 0.1 0.057 13.5 0.0 2.3 2 1 1 3 3 2 1 FaeA-like protein Sigma70_r4 PF04545.11 gi|147920392|ref|YP_685833.1| - 0.014 14.7 0.1 0.21 10.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|147920392|ref|YP_685833.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|147920392|ref|YP_685833.1| - 0.015 15.2 0.0 0.042 13.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|147920392|ref|YP_685833.1| - 0.023 14.2 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_13 PF11972.3 gi|147920392|ref|YP_685833.1| - 0.025 14.4 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.1 gi|147920392|ref|YP_685833.1| - 0.026 14.6 0.0 0.063 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|147920392|ref|YP_685833.1| - 0.037 14.1 0.0 0.14 12.3 0.0 1.9 2 0 0 2 2 1 0 KorB domain HTH_6 PF01418.12 gi|147920392|ref|YP_685833.1| - 0.047 13.4 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_10 PF04967.7 gi|147920392|ref|YP_685833.1| - 0.054 13.0 0.0 0.23 11.0 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Tnp_1 PF01527.15 gi|147920392|ref|YP_685833.1| - 0.06 13.2 0.0 1.3 8.9 0.0 2.4 2 0 0 2 2 2 0 Transposase HTH_29 PF13551.1 gi|147920392|ref|YP_685833.1| - 0.067 13.3 0.0 0.37 10.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix HTH_37 PF13744.1 gi|147920392|ref|YP_685833.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|147920392|ref|YP_685833.1| - 0.11 12.1 0.0 1.4 8.5 0.0 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF742) Sigma70_r3 PF04539.11 gi|147920392|ref|YP_685833.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 RPA_C PF08784.6 gi|147920392|ref|YP_685833.1| - 0.12 12.7 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 Replication protein A C terminal DUF3767 PF12597.3 gi|147920393|ref|YP_685832.1| - 0.049 13.3 0.1 0.071 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) TGS PF02824.16 gi|147920394|ref|YP_685831.1| - 4.8e-19 67.9 0.1 1.1e-18 66.7 0.1 1.7 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|147920394|ref|YP_685831.1| - 5.5e-19 68.2 0.2 1.8e-18 66.5 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|147920394|ref|YP_685831.1| - 2.1e-15 56.3 0.4 7.5e-14 51.2 0.0 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|147920394|ref|YP_685831.1| - 0.00014 21.7 0.6 0.55 10.0 0.0 2.8 3 0 0 3 3 3 2 Dynamin family ArgK PF03308.11 gi|147920394|ref|YP_685831.1| - 0.00052 18.8 0.1 0.013 14.3 0.0 2.5 2 0 0 2 2 2 1 ArgK protein ATP_bind_1 PF03029.12 gi|147920394|ref|YP_685831.1| - 0.00092 18.8 0.0 0.48 9.9 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|147920394|ref|YP_685831.1| - 0.0032 16.9 3.1 1.3 8.4 0.0 2.8 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|147920394|ref|YP_685831.1| - 0.0054 16.1 0.5 0.87 8.9 0.0 3.3 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|147920394|ref|YP_685831.1| - 0.013 14.7 0.0 0.023 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRPRB PF09439.5 gi|147920394|ref|YP_685831.1| - 0.029 13.5 0.0 0.072 12.2 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|147920394|ref|YP_685831.1| - 0.047 13.0 0.2 3.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Ras family AIG1 PF04548.11 gi|147920394|ref|YP_685831.1| - 0.049 12.7 0.0 0.089 11.8 0.0 1.4 1 0 0 1 1 1 0 AIG1 family Arf PF00025.16 gi|147920394|ref|YP_685831.1| - 0.049 12.8 0.5 0.47 9.6 0.0 2.2 2 0 0 2 2 2 0 ADP-ribosylation factor family Miro PF08477.8 gi|147920394|ref|YP_685831.1| - 0.054 13.9 0.1 0.63 10.5 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein AAA_16 PF13191.1 gi|147920394|ref|YP_685831.1| - 0.065 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.1 gi|147920394|ref|YP_685831.1| - 0.089 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|147920394|ref|YP_685831.1| - 0.09 12.6 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF465 PF04325.8 gi|147920394|ref|YP_685831.1| - 1.8 8.3 7.4 1.7 8.3 3.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF465) NHL PF01436.16 gi|147920395|ref|YP_685830.1| - 1.6e-40 135.0 21.0 1.2e-08 34.4 0.3 6.5 6 0 0 6 6 6 6 NHL repeat FlgD_ig PF13860.1 gi|147920395|ref|YP_685830.1| - 1.3e-12 47.2 13.9 1.1e-08 34.7 0.4 6.4 5 2 2 7 7 7 2 FlgD Ig-like domain SGL PF08450.7 gi|147920395|ref|YP_685830.1| - 5.2e-12 45.6 10.3 1.8e-05 24.2 1.2 5.6 3 2 1 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|147920395|ref|YP_685830.1| - 1.4e-08 34.3 10.5 0.036 13.8 0.1 5.5 4 1 0 4 4 4 4 Beta-propeller repeat MRJP PF03022.11 gi|147920395|ref|YP_685830.1| - 0.0021 17.3 1.5 25 3.9 0.0 4.6 3 1 1 5 5 5 0 Major royal jelly protein CHB_HEX_C PF03174.8 gi|147920395|ref|YP_685830.1| - 0.0074 16.0 14.8 0.26 11.1 0.0 3.8 4 0 0 4 4 4 2 Chitobiase/beta-hexosaminidase C-terminal domain US22 PF02393.11 gi|147920395|ref|YP_685830.1| - 0.022 14.7 0.0 8.4 6.4 0.1 3.8 3 2 0 3 3 3 0 US22 like potato_inhibit PF00280.13 gi|147920395|ref|YP_685830.1| - 0.072 13.2 1.1 31 4.8 0.1 3.6 3 0 0 3 3 3 0 Potato inhibitor I family DUF2439 PF10382.4 gi|147920395|ref|YP_685830.1| - 0.079 13.1 0.0 59 3.9 0.0 4.0 5 0 0 5 5 4 0 Protein of unknown function (DUF2439) DUF4366 PF14283.1 gi|147920395|ref|YP_685830.1| - 0.19 11.1 0.0 0.66 9.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) PQQ_3 PF13570.1 gi|147920395|ref|YP_685830.1| - 2.3 8.6 25.7 7.4 7.0 0.3 7.0 5 1 1 6 6 6 0 PQQ-like domain PEMT PF04191.8 gi|147920396|ref|YP_685829.1| - 4.3e-14 52.4 1.3 4.3e-14 52.4 0.9 2.4 2 1 0 2 2 2 1 Phospholipid methyltransferase DUF1295 PF06966.7 gi|147920396|ref|YP_685829.1| - 4.9e-09 35.8 0.2 4.9e-09 35.8 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.9 gi|147920396|ref|YP_685829.1| - 2.2e-08 34.2 0.1 5.7e-08 32.8 0.1 1.8 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|147920396|ref|YP_685829.1| - 2.3e-05 23.1 0.5 2.3e-05 23.1 0.4 1.7 1 1 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family NnrU PF07298.6 gi|147920396|ref|YP_685829.1| - 7.6e-05 22.1 1.3 0.00059 19.2 0.9 2.3 1 1 0 1 1 1 1 NnrU protein RseC_MucC PF04246.7 gi|147920396|ref|YP_685829.1| - 0.44 10.1 8.6 3.1 7.3 1.6 3.1 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC YtpI PF14007.1 gi|147920396|ref|YP_685829.1| - 0.5 10.3 7.4 0.3 11.0 0.2 3.3 4 1 0 4 4 4 0 YtpI-like protein DUF973 PF06157.6 gi|147920396|ref|YP_685829.1| - 0.51 9.2 9.6 0.74 8.7 6.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF4381 PF14316.1 gi|147920396|ref|YP_685829.1| - 4.1 7.4 6.7 45 4.1 0.5 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) SieB PF14163.1 gi|147920396|ref|YP_685829.1| - 4.2 6.9 7.2 10 5.6 0.2 2.5 3 0 0 3 3 3 0 Superinfection exclusion protein B Lipocalin_4 PF13648.1 gi|147920397|ref|YP_685828.1| - 0.006 17.1 0.1 0.0076 16.8 0.0 1.2 1 0 0 1 1 1 1 Lipocalin-like domain TetR_N PF00440.18 gi|147920398|ref|YP_685827.1| - 9.1e-16 57.2 0.6 3e-15 55.5 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.1 gi|147920398|ref|YP_685827.1| - 0.018 14.8 0.1 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TrmB PF01978.14 gi|147920399|ref|YP_685826.1| - 6.7e-21 73.7 1.5 8.1e-21 73.5 0.4 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|147920399|ref|YP_685826.1| - 0.00045 19.8 1.4 0.0012 18.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|147920399|ref|YP_685826.1| - 0.00057 19.9 0.1 0.0017 18.4 0.0 1.7 1 1 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.5 gi|147920399|ref|YP_685826.1| - 0.002 17.6 0.0 0.012 15.1 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|147920399|ref|YP_685826.1| - 0.0057 16.9 0.0 0.051 13.9 0.0 2.5 2 1 0 2 2 2 1 Winged helix DNA-binding domain Regulator_TrmB PF11495.3 gi|147920399|ref|YP_685826.1| - 0.011 14.7 0.0 0.044 12.7 0.0 1.9 1 1 0 1 1 1 0 Archaeal transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|147920399|ref|YP_685826.1| - 0.012 15.5 0.1 0.024 14.5 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Gemini_AC4_5 PF04807.7 gi|147920399|ref|YP_685826.1| - 0.032 13.7 0.1 0.093 12.2 0.1 1.8 1 0 0 1 1 1 0 Geminivirus AC4/5 conserved region DUF2250 PF10007.4 gi|147920399|ref|YP_685826.1| - 0.044 13.6 0.1 0.31 10.9 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|147920399|ref|YP_685826.1| - 0.063 13.0 0.7 1.4 8.7 0.0 3.0 4 0 0 4 4 4 0 Helix-turn-helix domain PPDK_N PF01326.14 gi|147920400|ref|YP_685825.1| - 2.4e-102 342.3 0.0 4e-102 341.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|147920400|ref|YP_685825.1| - 1.1e-23 82.6 0.0 2.4e-23 81.4 0.0 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain AAA PF00004.24 gi|147920402|ref|YP_685823.1| - 5.9e-46 155.9 0.7 2.5e-45 153.9 0.0 2.3 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|147920402|ref|YP_685823.1| - 2.1e-07 31.1 0.0 4.5e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|147920402|ref|YP_685823.1| - 1.3e-06 28.5 0.1 7.4e-05 22.8 0.1 2.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|147920402|ref|YP_685823.1| - 2.1e-06 27.4 1.6 8.5e-06 25.5 0.1 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|147920402|ref|YP_685823.1| - 7.3e-06 25.9 0.0 6.6e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|147920402|ref|YP_685823.1| - 1.3e-05 24.4 0.0 3.8e-05 22.8 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|147920402|ref|YP_685823.1| - 8.1e-05 22.1 0.0 0.00017 21.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|147920402|ref|YP_685823.1| - 0.00012 21.7 0.1 0.00027 20.6 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|147920402|ref|YP_685823.1| - 0.00023 21.9 0.0 0.00063 20.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|147920402|ref|YP_685823.1| - 0.00028 21.0 0.0 0.00081 19.5 0.0 1.8 2 0 0 2 2 1 1 RNA helicase DUF815 PF05673.8 gi|147920402|ref|YP_685823.1| - 0.00033 19.6 0.0 0.00088 18.2 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|147920402|ref|YP_685823.1| - 0.00051 18.8 0.4 0.0016 17.2 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus AAA_14 PF13173.1 gi|147920402|ref|YP_685823.1| - 0.00079 19.3 0.0 0.003 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|147920402|ref|YP_685823.1| - 0.0012 19.1 0.2 0.068 13.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|147920402|ref|YP_685823.1| - 0.0023 17.7 0.0 0.0077 16.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|147920402|ref|YP_685823.1| - 0.0042 16.6 0.0 0.0088 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|147920402|ref|YP_685823.1| - 0.0059 15.7 1.2 0.084 11.9 0.0 3.0 2 1 1 3 3 3 1 KaiC Mg_chelatase PF01078.16 gi|147920402|ref|YP_685823.1| - 0.0062 15.7 0.0 0.015 14.5 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|147920402|ref|YP_685823.1| - 0.0062 15.6 0.1 0.023 13.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_25 PF13481.1 gi|147920402|ref|YP_685823.1| - 0.0084 15.5 1.9 0.064 12.6 0.1 2.6 2 1 1 3 3 3 1 AAA domain PhoH PF02562.11 gi|147920402|ref|YP_685823.1| - 0.013 14.7 0.0 0.051 12.7 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|147920402|ref|YP_685823.1| - 0.016 15.1 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|147920402|ref|YP_685823.1| - 0.022 14.2 0.0 0.096 12.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|147920402|ref|YP_685823.1| - 0.025 14.2 0.0 0.068 12.7 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|147920402|ref|YP_685823.1| - 0.025 14.1 0.1 0.1 12.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|147920402|ref|YP_685823.1| - 0.025 14.6 0.0 0.13 12.2 0.0 2.3 2 0 0 2 2 1 0 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|147920402|ref|YP_685823.1| - 0.04 12.7 0.0 0.077 11.8 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|147920402|ref|YP_685823.1| - 0.04 13.5 0.0 0.15 11.7 0.0 2.0 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|147920402|ref|YP_685823.1| - 0.1 12.8 0.4 0.38 11.0 0.0 2.2 2 1 0 2 2 2 0 ABC transporter SNARE_assoc PF09335.6 gi|147920404|ref|YP_685821.1| - 4.1e-21 75.4 7.5 4.1e-21 75.4 5.2 2.2 3 0 0 3 3 3 1 SNARE associated Golgi protein HHH_8 PF14716.1 gi|147920405|ref|YP_685820.1| - 1.1e-22 80.0 1.9 8.5e-18 64.3 0.0 3.6 2 1 1 3 3 3 3 Helix-hairpin-helix domain DNA_pol_B_thumb PF14791.1 gi|147920405|ref|YP_685820.1| - 3.3e-14 52.3 0.2 8.2e-14 51.0 0.1 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb PHP PF02811.14 gi|147920405|ref|YP_685820.1| - 9.4e-13 48.3 0.3 2.4e-12 46.9 0.1 1.8 2 0 0 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|147920405|ref|YP_685820.1| - 3e-08 33.6 5.5 1.5e-07 31.4 0.4 3.2 4 0 0 4 4 4 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|147920405|ref|YP_685820.1| - 1.3e-06 28.0 0.4 1.9 8.7 0.0 3.9 3 0 0 3 3 3 3 IMS family HHH motif DNA_pol_B_palm PF14792.1 gi|147920405|ref|YP_685820.1| - 0.00022 21.2 0.9 0.0025 17.8 0.0 2.7 2 1 1 3 3 3 1 DNA polymerase beta palm HHH PF00633.18 gi|147920405|ref|YP_685820.1| - 0.00076 19.0 1.3 0.12 12.1 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF3701 PF12482.3 gi|147920405|ref|YP_685820.1| - 0.028 14.1 1.1 1.4 8.6 0.1 3.4 4 1 0 4 4 4 0 Phage integrase protein UPF0020 PF01170.13 gi|147920406|ref|YP_685819.1| - 3.5e-28 98.3 0.0 5.4e-28 97.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|147920406|ref|YP_685819.1| - 1.9e-19 69.8 0.0 8.5e-19 67.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|147920406|ref|YP_685819.1| - 4.1e-09 36.2 0.0 4.2e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_31 PF13847.1 gi|147920406|ref|YP_685819.1| - 5.5e-08 32.5 0.0 8.9e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147920406|ref|YP_685819.1| - 6.2e-08 33.0 0.0 1.5e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920406|ref|YP_685819.1| - 1.9e-06 28.3 0.0 7.4e-06 26.5 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|147920406|ref|YP_685819.1| - 2e-06 27.2 0.0 3.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|147920406|ref|YP_685819.1| - 8.7e-05 22.8 0.0 0.00022 21.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|147920406|ref|YP_685819.1| - 0.0088 15.4 0.0 0.034 13.5 0.0 1.9 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.12 gi|147920406|ref|YP_685819.1| - 0.011 14.7 0.0 0.041 12.9 0.0 1.8 1 1 0 1 1 1 0 Putative methyltransferase Methyltransf_23 PF13489.1 gi|147920406|ref|YP_685819.1| - 0.016 14.9 0.0 0.049 13.3 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920406|ref|YP_685819.1| - 0.022 15.2 0.0 0.29 11.6 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain PrmA PF06325.8 gi|147920406|ref|YP_685819.1| - 0.026 13.6 0.0 0.054 12.6 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AviRa PF11599.3 gi|147920406|ref|YP_685819.1| - 0.046 12.7 0.0 0.13 11.3 0.0 1.7 2 0 0 2 2 2 0 RRNA methyltransferase AviRa Methyltransf_15 PF09445.5 gi|147920406|ref|YP_685819.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase LigT_PEase PF02834.11 gi|147920407|ref|YP_685818.1| - 2.5e-25 88.2 0.0 5.5e-14 51.9 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|147920407|ref|YP_685818.1| - 7.4e-15 54.9 0.0 8.5e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|147920407|ref|YP_685818.1| - 6.7e-07 29.2 0.0 8e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|147920408|ref|YP_685817.1| - 4.8e-43 145.6 0.0 7.5e-43 145.0 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|147920408|ref|YP_685817.1| - 6.5e-09 35.9 0.0 1.5e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|147920409|ref|YP_685816.1| - 2.4e-81 273.4 0.0 3e-81 273.1 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DUF387 PF04079.11 gi|147920410|ref|YP_685815.1| - 0.0018 17.6 0.3 0.0044 16.4 0.1 1.6 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) TrmB PF01978.14 gi|147920410|ref|YP_685815.1| - 0.0062 16.2 0.2 0.023 14.4 0.1 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|147920410|ref|YP_685815.1| - 0.061 13.0 0.1 0.16 11.7 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family JSRP PF15312.1 gi|147920412|ref|YP_685813.1| - 0.89 9.5 4.8 1.7 8.6 3.3 1.7 1 1 0 1 1 1 0 Junctional sarcoplasmic reticulum protein EamA PF00892.15 gi|147920413|ref|YP_685812.1| - 2.4e-44 150.3 40.1 5.7e-24 84.5 10.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|147920413|ref|YP_685812.1| - 9.2e-10 38.7 41.5 3.1e-07 30.5 9.6 3.6 2 2 2 4 4 4 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|147920413|ref|YP_685812.1| - 0.00023 20.1 6.0 0.00029 19.7 4.2 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|147920413|ref|YP_685812.1| - 0.0032 17.1 30.3 0.12 11.9 7.7 2.8 2 1 0 2 2 2 2 Triose-phosphate Transporter family Sensor_TM1 PF13755.1 gi|147920413|ref|YP_685812.1| - 0.015 14.7 1.2 1.5 8.4 0.4 2.9 2 0 0 2 2 2 0 Sensor N-terminal transmembrane domain DUF2919 PF11143.3 gi|147920413|ref|YP_685812.1| - 3.8 7.3 9.5 0.34 10.7 1.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) Metallophos_2 PF12850.2 gi|147920415|ref|YP_685810.1| - 2.2e-09 37.3 0.0 3.5e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147920415|ref|YP_685810.1| - 0.00076 18.9 0.2 0.00076 18.9 0.2 2.4 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.6 gi|147920415|ref|YP_685810.1| - 0.0067 14.5 0.0 0.013 13.5 0.0 1.4 2 0 0 2 2 2 1 Firmicute fructose-1,6-bisphosphatase SdpI PF13630.1 gi|147920416|ref|YP_685809.1| - 0.83 9.4 3.7 1.4 8.7 2.3 1.7 1 1 0 1 1 1 0 SdpI/YhfL protein family Radical_SAM PF04055.16 gi|147920417|ref|YP_685808.1| - 5.7e-18 65.6 0.0 1.4e-17 64.3 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|147920417|ref|YP_685808.1| - 4.1e-09 36.4 0.3 8.5e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|147920417|ref|YP_685808.1| - 1.1e-08 35.2 0.0 2.3e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Abhydrolase_6 PF12697.2 gi|147920418|ref|YP_685807.1| - 1e-24 87.7 0.1 1.2e-24 87.4 0.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|147920418|ref|YP_685807.1| - 3.5e-13 49.5 0.0 4.6e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|147920418|ref|YP_685807.1| - 4.2e-11 42.8 0.0 8.2e-11 41.8 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|147920418|ref|YP_685807.1| - 0.0011 18.8 0.0 0.003 17.4 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein Abhydrolase_3 PF07859.8 gi|147920418|ref|YP_685807.1| - 0.0016 18.0 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|147920418|ref|YP_685807.1| - 0.039 14.1 0.1 0.12 12.6 0.0 1.6 1 1 1 2 2 2 0 Thioesterase domain PAS_9 PF13426.1 gi|147920419|ref|YP_685806.1| - 1.3e-36 125.1 0.0 1.2e-12 48.1 0.0 3.9 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|147920419|ref|YP_685806.1| - 1.5e-34 118.1 0.2 1.2e-14 54.0 0.0 4.6 4 1 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|147920419|ref|YP_685806.1| - 2.2e-32 111.3 0.0 1.8e-12 47.2 0.0 3.5 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|147920419|ref|YP_685806.1| - 2.5e-22 78.6 0.1 5.6e-22 77.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|147920419|ref|YP_685806.1| - 3.7e-16 58.9 0.0 9.3e-06 25.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|147920419|ref|YP_685806.1| - 6e-08 32.2 0.1 0.00065 19.4 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_10 PF13596.1 gi|147920419|ref|YP_685806.1| - 1.3e-07 31.7 0.0 0.3 11.3 0.0 4.1 3 1 0 3 3 3 3 PAS domain HATPase_c_2 PF13581.1 gi|147920419|ref|YP_685806.1| - 0.00041 20.1 0.0 0.0011 18.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147920419|ref|YP_685806.1| - 0.0022 17.6 0.0 0.0043 16.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2111 PF09884.4 gi|147920419|ref|YP_685806.1| - 0.043 13.6 0.5 1.3 8.8 0.0 2.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2111) PEP-utilisers_N PF05524.8 gi|147920419|ref|YP_685806.1| - 0.11 12.2 5.2 1.6 8.5 0.0 2.9 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal PAS_11 PF14598.1 gi|147920419|ref|YP_685806.1| - 0.13 12.1 0.0 6 6.8 0.0 2.9 2 0 0 2 2 2 0 PAS domain Cache_3 PF14827.1 gi|147920419|ref|YP_685806.1| - 0.48 10.3 2.2 62 3.5 0.0 3.8 3 1 1 4 4 4 0 Sensory domain of two-component sensor kinase KGG PF10685.4 gi|147920420|ref|YP_685805.1| - 1.8e-11 43.6 20.3 0.002 18.0 0.1 4.5 5 0 0 5 5 5 4 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|147920420|ref|YP_685805.1| - 1.9e-11 44.1 24.8 1.1e-06 28.9 7.4 2.1 1 1 1 2 2 2 2 Small hydrophilic plant seed protein PARP_reg PF02877.9 gi|147920420|ref|YP_685805.1| - 0.077 12.6 0.0 0.38 10.4 0.0 2.0 1 1 0 1 1 1 0 Poly(ADP-ribose) polymerase, regulatory domain SASP PF00269.15 gi|147920420|ref|YP_685805.1| - 4.3 7.2 9.0 8.1 6.3 0.4 2.6 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type DUF21 PF01595.15 gi|147920421|ref|YP_685804.1| - 5e-53 179.1 6.6 6.7e-53 178.6 4.5 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|147920421|ref|YP_685804.1| - 1.4e-24 85.6 0.0 3.3e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|147920421|ref|YP_685804.1| - 1.4e-19 69.6 0.0 1.8e-08 34.0 0.0 2.5 2 0 0 2 2 2 2 CBS domain Cas_Cas2CT1978 PF09707.5 gi|147920422|ref|YP_685788.1| - 1.2e-32 111.7 0.0 1.3e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) Cas_Cas1 PF01867.11 gi|147920423|ref|YP_685787.1| - 2.8e-25 88.9 0.0 4.8e-23 81.6 0.0 2.0 1 1 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_assoc PF08798.6 gi|147920424|ref|YP_685786.1| - 2.6e-61 207.1 0.0 2.9e-61 206.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas_Cas5d PF09704.5 gi|147920425|ref|YP_685785.1| - 2.2e-53 181.1 0.0 2.6e-53 180.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_CT1975 PF09344.5 gi|147920426|ref|YP_685784.1| - 2.1e-94 316.7 0.8 3.5e-94 316.0 0.6 1.3 1 1 0 1 1 1 1 CT1975-like protein CRISPR_Cse2 PF09485.5 gi|147920427|ref|YP_685783.1| - 3.7e-34 117.8 0.0 5.4e-34 117.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) CRISPR_Cse1 PF09481.5 gi|147920428|ref|YP_685782.1| - 1.3e-107 360.5 0.0 1.5e-107 360.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cse1 (CRISPR_cse1) DEAD PF00270.24 gi|147920429|ref|YP_685781.1| - 2.4e-10 40.1 0.0 3e-09 36.6 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147920429|ref|YP_685781.1| - 0.0022 17.8 0.0 0.04 13.7 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147920429|ref|YP_685781.1| - 0.0046 16.8 0.0 0.042 13.6 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|147920429|ref|YP_685781.1| - 0.01 15.6 0.0 0.031 14.0 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain Zn-ribbon_8 PF09723.5 gi|147920430|ref|YP_685779.1| - 0.00019 21.3 1.3 0.0096 15.8 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|147920430|ref|YP_685779.1| - 0.015 14.7 5.2 0.14 11.6 3.6 2.3 1 1 0 1 1 1 0 InsA N-terminal domain TFIIS_C PF01096.13 gi|147920430|ref|YP_685779.1| - 0.063 12.9 2.1 0.26 10.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-HIT PF04438.11 gi|147920430|ref|YP_685779.1| - 0.14 11.8 2.6 0.5 10.0 0.2 2.3 2 0 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.2 gi|147920430|ref|YP_685779.1| - 0.35 10.7 6.6 1 9.2 4.6 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|147920430|ref|YP_685779.1| - 0.42 10.3 4.4 3.2 7.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_5 PF13719.1 gi|147920430|ref|YP_685779.1| - 0.48 10.0 2.2 5.7 6.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|147920430|ref|YP_685779.1| - 0.56 9.9 2.2 5.1 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain AhpC-TSA PF00578.16 gi|147920432|ref|YP_685777.1| - 3.2e-39 133.4 0.0 4.2e-39 133.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147920432|ref|YP_685777.1| - 1.4e-19 70.1 0.0 1.6e-19 69.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|147920432|ref|YP_685777.1| - 7e-06 25.5 0.1 1.5e-05 24.5 0.1 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin SCO1-SenC PF02630.9 gi|147920432|ref|YP_685777.1| - 0.08 12.5 0.0 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 SCO1/SenC YodA PF09223.6 gi|147920432|ref|YP_685777.1| - 0.095 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 YodA lipocalin-like domain Bactofilin PF04519.8 gi|147920434|ref|YP_685775.1| - 0.0002 21.3 0.1 0.00091 19.2 0.0 2.1 1 1 1 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|147920434|ref|YP_685775.1| - 0.14 11.6 0.9 4 7.1 0.0 3.2 3 2 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Sua5_yciO_yrdC PF01300.13 gi|147920435|ref|YP_685774.1| - 1.3e-42 145.0 0.0 2.1e-42 144.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination Acylphosphatase PF00708.13 gi|147920435|ref|YP_685774.1| - 5.4e-25 87.3 0.2 1.1e-24 86.2 0.1 1.6 1 0 0 1 1 1 1 Acylphosphatase zf-HYPF PF07503.7 gi|147920435|ref|YP_685774.1| - 9.6e-23 79.3 11.3 3.6e-18 64.6 1.9 2.5 2 0 0 2 2 2 2 HypF finger Peptidase_M22 PF00814.20 gi|147920435|ref|YP_685774.1| - 8.9e-07 28.6 1.6 3.7e-05 23.3 0.2 2.2 2 0 0 2 2 2 2 Glycoprotease family PsaM PF07465.8 gi|147920435|ref|YP_685774.1| - 0.038 13.5 0.0 0.078 12.5 0.0 1.5 1 0 0 1 1 1 0 Photosystem I protein M (PsaM) ArsR PF09824.4 gi|147920436|ref|YP_685773.1| - 2.7e-68 228.3 0.0 3e-68 228.1 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator DUF387 PF04079.11 gi|147920436|ref|YP_685773.1| - 0.0073 15.6 0.1 0.02 14.2 0.0 1.7 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) Glyco_hydro_26 PF02156.10 gi|147920436|ref|YP_685773.1| - 0.11 11.8 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 26 MarR_2 PF12802.2 gi|147920437|ref|YP_685772.1| - 5.5e-09 35.5 0.1 3.4e-08 33.0 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|147920437|ref|YP_685772.1| - 1.7e-08 33.7 0.0 4.6e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|147920437|ref|YP_685772.1| - 2.7e-06 27.0 0.0 7.4e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|147920437|ref|YP_685772.1| - 4e-06 27.0 0.0 1.3e-05 25.4 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|147920437|ref|YP_685772.1| - 7e-06 25.6 0.0 1.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|147920437|ref|YP_685772.1| - 1.9e-05 24.1 0.0 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_45 PF14947.1 gi|147920437|ref|YP_685772.1| - 0.00012 21.8 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|147920437|ref|YP_685772.1| - 0.00029 20.4 0.1 0.003 17.1 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|147920437|ref|YP_685772.1| - 0.0004 19.9 0.0 0.00092 18.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|147920437|ref|YP_685772.1| - 0.004 17.2 1.1 0.025 14.6 0.0 2.6 3 0 0 3 3 2 1 Transcriptional regulator HTH_13 PF11972.3 gi|147920437|ref|YP_685772.1| - 0.0065 16.2 0.0 0.028 14.2 0.0 2.1 2 1 1 3 3 2 1 HTH DNA binding domain HTH_3 PF01381.17 gi|147920437|ref|YP_685772.1| - 0.011 15.5 0.0 0.034 13.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix Phage_rep_O PF04492.8 gi|147920437|ref|YP_685772.1| - 0.011 15.9 0.0 0.029 14.5 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage replication protein O HTH_CodY PF08222.6 gi|147920437|ref|YP_685772.1| - 0.02 14.2 0.0 0.68 9.3 0.0 2.5 2 0 0 2 2 2 0 CodY helix-turn-helix domain EAP30 PF04157.11 gi|147920437|ref|YP_685772.1| - 0.026 13.7 0.1 0.4 9.8 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_IclR PF09339.5 gi|147920437|ref|YP_685772.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|147920437|ref|YP_685772.1| - 0.059 13.5 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Fe_dep_repress PF01325.14 gi|147920437|ref|YP_685772.1| - 0.06 13.3 0.1 0.34 10.8 0.0 2.1 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|147920437|ref|YP_685772.1| - 0.067 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein NAD_binding_11 PF14833.1 gi|147920437|ref|YP_685772.1| - 0.067 13.2 0.7 0.2 11.6 0.2 2.0 2 0 0 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KorB PF08535.5 gi|147920437|ref|YP_685772.1| - 0.088 12.9 0.1 0.34 11.0 0.0 2.0 2 0 0 2 2 2 0 KorB domain HTH_10 PF04967.7 gi|147920437|ref|YP_685772.1| - 0.092 12.3 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_1 PF01527.15 gi|147920437|ref|YP_685772.1| - 0.11 12.5 0.0 0.26 11.2 0.0 1.8 1 1 0 1 1 1 0 Transposase Mnd1 PF03962.10 gi|147920437|ref|YP_685772.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family PCI PF01399.22 gi|147920437|ref|YP_685772.1| - 0.15 12.4 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 PCI domain Nitro_FeMo-Co PF02579.12 gi|147920437|ref|YP_685772.1| - 0.16 12.0 1.8 2.5 8.2 0.2 2.6 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor DnaJ PF00226.26 gi|147920439|ref|YP_685770.1| - 9.7e-26 89.3 0.6 1.3e-25 88.8 0.4 1.2 1 0 0 1 1 1 1 DnaJ domain DUF3353 PF11833.3 gi|147920439|ref|YP_685770.1| - 0.13 11.7 4.0 0.26 10.7 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3353) Pam17 PF08566.5 gi|147920439|ref|YP_685770.1| - 0.16 11.6 0.4 0.34 10.5 0.3 1.5 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 DUF4118 PF13493.1 gi|147920439|ref|YP_685770.1| - 0.39 10.9 5.6 0.65 10.2 3.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) Transglut_core PF01841.14 gi|147920440|ref|YP_685769.1| - 1.3e-15 57.5 0.3 2.4e-15 56.7 0.2 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|147920440|ref|YP_685769.1| - 0.00043 20.0 0.1 0.00091 19.0 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily DEAD PF00270.24 gi|147920442|ref|YP_685767.1| - 2.6e-27 95.3 0.0 1.2e-26 93.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147920442|ref|YP_685767.1| - 4.2e-13 48.9 0.0 9.4e-13 47.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147920442|ref|YP_685767.1| - 4.1e-06 26.7 0.0 9.8e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|147920442|ref|YP_685767.1| - 7.1e-05 21.7 0.0 0.00017 20.4 0.0 1.6 2 0 0 2 2 2 1 SNF2 family N-terminal domain SecA_DEAD PF07517.9 gi|147920442|ref|YP_685767.1| - 0.13 11.5 0.0 0.25 10.5 0.0 1.4 1 0 0 1 1 1 0 SecA DEAD-like domain polyprenyl_synt PF00348.12 gi|147920444|ref|YP_001218859.1| - 2.5e-38 131.4 0.3 3e-38 131.1 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase AAA PF00004.24 gi|147920445|ref|YP_685764.1| - 2.4e-96 318.9 0.0 1.3e-47 161.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|147920445|ref|YP_685764.1| - 2.7e-25 88.1 0.2 1.2e-24 86.0 0.3 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|147920445|ref|YP_685764.1| - 3.3e-15 55.4 0.0 7.8e-15 54.2 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.9 gi|147920445|ref|YP_685764.1| - 3e-14 53.3 0.0 1.8e-07 31.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|147920445|ref|YP_685764.1| - 5.5e-14 51.7 0.0 4.8e-06 25.7 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|147920445|ref|YP_685764.1| - 2.6e-13 50.2 0.3 0.00041 20.5 0.0 4.5 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|147920445|ref|YP_685764.1| - 6.8e-13 49.0 0.0 3.8e-05 23.7 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|147920445|ref|YP_685764.1| - 1.4e-11 44.4 0.0 3.8e-05 23.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|147920445|ref|YP_685764.1| - 3e-11 43.2 0.8 0.00019 21.1 0.0 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|147920445|ref|YP_685764.1| - 6.8e-11 43.0 0.1 0.00012 22.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|147920445|ref|YP_685764.1| - 1.5e-10 40.4 0.4 0.0006 18.6 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_14 PF13173.1 gi|147920445|ref|YP_685764.1| - 3.5e-10 39.8 0.0 0.00034 20.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|147920445|ref|YP_685764.1| - 4.2e-10 39.0 0.0 0.00047 19.3 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|147920445|ref|YP_685764.1| - 7.9e-10 38.4 0.1 0.0012 18.3 0.0 3.1 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_19 PF13245.1 gi|147920445|ref|YP_685764.1| - 1.3e-09 37.6 1.4 0.0016 18.1 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain ABC_tran PF00005.22 gi|147920445|ref|YP_685764.1| - 1e-08 35.5 0.0 0.0015 18.8 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|147920445|ref|YP_685764.1| - 1.3e-08 34.6 0.2 0.17 11.5 0.0 4.2 3 1 0 3 3 3 2 NACHT domain AAA_28 PF13521.1 gi|147920445|ref|YP_685764.1| - 3.7e-08 33.5 0.0 0.0056 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|147920445|ref|YP_685764.1| - 6.7e-08 32.9 0.0 0.014 15.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|147920445|ref|YP_685764.1| - 2.8e-07 30.1 0.0 0.042 13.3 0.0 3.0 3 1 0 3 3 2 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|147920445|ref|YP_685764.1| - 3.5e-07 30.1 0.2 0.017 14.8 0.1 3.5 2 2 1 3 3 3 2 Archaeal ATPase RNA_helicase PF00910.17 gi|147920445|ref|YP_685764.1| - 4.2e-07 30.1 0.0 0.027 14.6 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|147920445|ref|YP_685764.1| - 8e-07 28.4 0.4 0.021 14.0 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|147920445|ref|YP_685764.1| - 1.1e-06 28.3 0.0 0.028 14.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|147920445|ref|YP_685764.1| - 2e-06 27.8 0.0 0.024 14.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|147920445|ref|YP_685764.1| - 4.2e-06 26.2 7.9 0.14 11.5 0.3 4.2 2 2 1 3 3 3 2 AAA domain KaiC PF06745.8 gi|147920445|ref|YP_685764.1| - 1e-05 24.8 0.7 0.32 10.0 0.0 3.3 2 1 1 3 3 3 2 KaiC PhoH PF02562.11 gi|147920445|ref|YP_685764.1| - 1.3e-05 24.5 0.2 0.18 11.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.12 gi|147920445|ref|YP_685764.1| - 1.7e-05 23.8 0.1 0.033 13.0 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|147920445|ref|YP_685764.1| - 1.8e-05 23.9 0.0 0.085 11.8 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|147920445|ref|YP_685764.1| - 5.5e-05 22.1 0.0 0.13 11.0 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_3 PF07726.6 gi|147920445|ref|YP_685764.1| - 0.0001 21.9 0.0 0.63 9.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.9 gi|147920445|ref|YP_685764.1| - 0.00017 20.7 0.7 0.083 11.8 0.0 3.1 2 2 1 3 3 3 1 KAP family P-loop domain AAA_11 PF13086.1 gi|147920445|ref|YP_685764.1| - 0.00017 21.2 0.0 0.26 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Bac_DnaA PF00308.13 gi|147920445|ref|YP_685764.1| - 0.00027 20.6 0.0 0.32 10.6 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.8 gi|147920445|ref|YP_685764.1| - 0.00033 19.6 0.0 0.39 9.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ResIII PF04851.10 gi|147920445|ref|YP_685764.1| - 0.00035 20.4 0.0 0.16 11.7 0.0 2.5 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.20 gi|147920445|ref|YP_685764.1| - 0.0013 18.2 0.0 1.1 8.6 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Vps4_C PF09336.5 gi|147920445|ref|YP_685764.1| - 0.002 17.9 0.3 2.4 8.1 0.0 3.3 4 0 0 4 4 2 1 Vps4 C terminal oligomerisation domain AAA_30 PF13604.1 gi|147920445|ref|YP_685764.1| - 0.0024 17.4 0.0 2.9 7.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|147920445|ref|YP_685764.1| - 0.0031 16.4 0.0 1.8 7.4 0.0 2.7 3 0 0 3 3 2 1 Type II/IV secretion system protein Guanylate_kin PF00625.16 gi|147920445|ref|YP_685764.1| - 0.0041 16.5 0.3 21 4.5 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase NTPase_1 PF03266.10 gi|147920445|ref|YP_685764.1| - 0.0047 16.6 0.8 6.7 6.3 0.0 3.4 2 1 0 2 2 2 0 NTPase AAA_10 PF12846.2 gi|147920445|ref|YP_685764.1| - 0.0069 15.8 0.2 2.9 7.2 0.0 2.8 2 1 0 2 2 2 0 AAA-like domain SKI PF01202.17 gi|147920445|ref|YP_685764.1| - 0.008 16.0 0.0 1.5 8.6 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase Viral_helicase1 PF01443.13 gi|147920445|ref|YP_685764.1| - 0.0084 15.6 0.0 3.9 6.9 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase UPF0079 PF02367.12 gi|147920445|ref|YP_685764.1| - 0.011 15.3 0.0 1.5 8.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 MCM PF00493.18 gi|147920445|ref|YP_685764.1| - 0.028 13.2 0.0 7.7 5.2 0.0 3.0 3 0 0 3 3 2 0 MCM2/3/5 family PduV-EutP PF10662.4 gi|147920445|ref|YP_685764.1| - 0.029 13.8 0.0 9.9 5.6 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.5 gi|147920445|ref|YP_685764.1| - 0.043 13.0 0.0 4.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|147920445|ref|YP_685764.1| - 0.048 13.2 0.0 12 5.5 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147920445|ref|YP_685764.1| - 0.059 13.6 0.2 10 6.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|147920445|ref|YP_685764.1| - 0.059 13.3 0.1 18 5.2 0.0 2.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.14 gi|147920445|ref|YP_685764.1| - 0.076 12.4 0.2 11 5.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.5 gi|147920445|ref|YP_685764.1| - 0.091 11.9 0.0 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Miro PF08477.8 gi|147920445|ref|YP_685764.1| - 0.1 13.1 0.0 4.4 7.8 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein ADH_N PF08240.7 gi|147920446|ref|YP_685763.1| - 4.4e-21 74.6 0.2 8.5e-21 73.7 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|147920446|ref|YP_685763.1| - 1.9e-07 30.7 0.0 3e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|147920446|ref|YP_685763.1| - 0.00011 22.3 0.0 0.00017 21.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|147920446|ref|YP_685763.1| - 0.035 13.1 0.1 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|147920446|ref|YP_685763.1| - 0.048 14.0 0.2 0.15 12.4 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Tox-PL PF15644.1 gi|147920447|ref|YP_685762.1| - 0.015 16.0 0.0 0.023 15.4 0.0 1.3 1 0 0 1 1 1 0 Papain fold toxin 1 Glycos_trans_3N PF02885.12 gi|147920448|ref|YP_685761.1| - 1.1e-16 60.1 0.1 1.9e-16 59.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PYNP_C PF07831.8 gi|147920448|ref|YP_685761.1| - 1.8e-13 49.7 0.0 7.1e-13 47.8 0.0 2.1 1 0 0 1 1 1 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|147920448|ref|YP_685761.1| - 6.9e-13 48.5 3.3 3.5e-12 46.2 0.5 3.0 2 2 0 2 2 2 1 Glycosyl transferase family, a/b domain CDC48_N PF02359.13 gi|147920448|ref|YP_685761.1| - 1.2e-05 25.1 0.4 0.00011 22.0 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.16 gi|147920448|ref|YP_685761.1| - 0.00013 21.7 0.2 0.00025 20.8 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HlyD_3 PF13437.1 gi|147920448|ref|YP_685761.1| - 0.0012 19.1 0.6 0.029 14.7 0.0 3.2 4 0 0 4 4 4 1 HlyD family secretion protein DUF2254 PF10011.4 gi|147920448|ref|YP_685761.1| - 0.11 10.9 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Biotin_lipoyl PF00364.17 gi|147920448|ref|YP_685761.1| - 0.15 11.7 5.5 0.75 9.4 0.0 4.1 5 0 0 5 5 5 0 Biotin-requiring enzyme Prok-RING_1 PF14446.1 gi|147920449|ref|YP_685760.1| - 5.7e-15 54.7 9.3 8.1e-15 54.2 6.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|147920449|ref|YP_685760.1| - 0.0015 18.3 8.5 0.0069 16.1 2.2 2.2 1 1 1 2 2 2 1 Double zinc ribbon C1_1 PF00130.17 gi|147920449|ref|YP_685760.1| - 0.0088 15.7 6.6 0.039 13.6 4.8 1.7 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|147920449|ref|YP_685760.1| - 0.028 13.8 5.1 0.03 13.8 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_4 PF14570.1 gi|147920449|ref|YP_685760.1| - 0.049 13.2 1.6 0.049 13.2 1.1 2.2 2 1 0 2 2 2 0 RING/Ubox like zinc-binding domain Auto_anti-p27 PF06677.7 gi|147920449|ref|YP_685760.1| - 0.05 13.3 5.3 0.2 11.4 1.8 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|147920449|ref|YP_685760.1| - 0.08 12.1 6.6 0.13 11.4 1.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.8 gi|147920449|ref|YP_685760.1| - 0.28 8.7 3.2 0.3 8.7 2.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|147920449|ref|YP_685760.1| - 0.35 10.5 7.7 0.36 10.5 3.4 2.0 1 1 2 3 3 2 0 Putative transposase DNA-binding domain DUF4206 PF13901.1 gi|147920449|ref|YP_685760.1| - 0.37 10.3 5.4 0.53 9.8 3.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) A2L_zn_ribbon PF08792.5 gi|147920449|ref|YP_685760.1| - 0.88 9.1 5.5 0.3 10.5 0.8 2.3 2 1 0 2 2 2 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|147920449|ref|YP_685760.1| - 0.96 9.1 11.0 5.5 6.7 2.4 3.0 2 1 0 2 2 2 0 Adenylate kinase, active site lid PHD PF00628.24 gi|147920449|ref|YP_685760.1| - 1.7 8.4 9.1 5.4 6.7 6.3 1.8 1 1 0 1 1 1 0 PHD-finger C1_3 PF07649.7 gi|147920449|ref|YP_685760.1| - 2.4 8.2 5.8 6.5 6.8 1.3 2.3 2 0 0 2 2 2 0 C1-like domain DNA_RNApol_7kD PF03604.8 gi|147920449|ref|YP_685760.1| - 3.6 7.1 6.0 1.5 8.3 0.2 2.7 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|147920449|ref|YP_685760.1| - 9.7 6.2 13.3 3.1 7.8 3.6 3.2 1 1 2 3 3 3 0 Zinc ribbon domain ACBP PF00887.14 gi|147920450|ref|YP_685759.1| - 0.079 12.6 0.1 0.091 12.4 0.1 1.3 1 0 0 1 1 1 0 Acyl CoA binding protein DUF4061 PF13270.1 gi|147920450|ref|YP_685759.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) PIN PF01850.16 gi|147920451|ref|YP_685758.1| - 1.7e-08 34.7 0.1 2.6e-08 34.2 0.1 1.2 1 0 0 1 1 1 1 PIN domain EKR PF10371.4 gi|147920451|ref|YP_685758.1| - 0.036 13.6 0.0 0.057 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function PIN_3 PF13470.1 gi|147920451|ref|YP_685758.1| - 0.13 12.9 0.2 0.32 11.6 0.0 1.6 2 0 0 2 2 2 0 PIN domain DNA_pol_E_B PF04042.11 gi|147920452|ref|YP_685757.1| - 1.6e-14 53.6 0.0 2.4e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|147920452|ref|YP_685757.1| - 8e-10 38.7 0.1 1.5e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.20 gi|147920452|ref|YP_685757.1| - 1.6e-05 24.6 0.0 5.8e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Metallophos PF00149.23 gi|147920452|ref|YP_685757.1| - 3.4e-05 23.3 2.1 8.5e-05 22.0 1.5 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Peptidase_S24 PF00717.18 gi|147920453|ref|YP_685756.1| - 0.0024 17.4 0.0 0.0041 16.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like AhpC-TSA PF00578.16 gi|147920454|ref|YP_685755.1| - 3.3e-25 88.1 0.0 3.9e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147920454|ref|YP_685755.1| - 5.8e-13 48.6 0.0 7.5e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|147920454|ref|YP_685755.1| - 0.077 12.9 0.0 2.3 8.1 0.0 2.1 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme Peptidase_S24 PF00717.18 gi|147920455|ref|YP_685754.1| - 0.00033 20.2 0.1 0.00077 19.0 0.1 1.6 1 1 0 1 1 1 1 Peptidase S24-like Cdc6_C PF09079.6 gi|147920456|ref|YP_685753.1| - 4e-28 96.9 0.8 2.2e-27 94.6 0.2 2.4 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|147920456|ref|YP_685753.1| - 1.6e-13 50.9 0.0 3.6e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|147920456|ref|YP_685753.1| - 1e-10 41.9 0.0 2.3e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|147920456|ref|YP_685753.1| - 3.5e-09 36.9 0.1 5.3e-08 33.0 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|147920456|ref|YP_685753.1| - 1.8e-07 31.0 0.9 4.1e-07 29.9 0.2 1.8 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|147920456|ref|YP_685753.1| - 7.9e-06 25.6 0.0 1.5e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|147920456|ref|YP_685753.1| - 4.4e-05 22.9 0.1 0.00011 21.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|147920456|ref|YP_685753.1| - 0.00019 21.3 0.0 0.00043 20.1 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|147920456|ref|YP_685753.1| - 0.00032 19.7 0.0 0.00058 18.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|147920456|ref|YP_685753.1| - 0.00042 19.8 3.8 0.033 13.6 0.1 2.6 2 1 1 3 3 3 2 DEAD/DEAH box helicase Bac_DnaA PF00308.13 gi|147920456|ref|YP_685753.1| - 0.00069 19.3 0.4 0.0034 17.0 0.2 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_14 PF13173.1 gi|147920456|ref|YP_685753.1| - 0.00077 19.3 0.1 0.0016 18.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|147920456|ref|YP_685753.1| - 0.00082 18.3 0.0 0.0045 15.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|147920456|ref|YP_685753.1| - 0.00092 19.5 2.2 0.0054 17.0 0.2 2.6 2 1 0 2 2 2 1 AAA domain Kinesin PF00225.18 gi|147920456|ref|YP_685753.1| - 0.002 16.8 0.0 0.0026 16.5 0.0 1.3 1 0 0 1 1 1 1 Kinesin motor domain KAP_NTPase PF07693.9 gi|147920456|ref|YP_685753.1| - 0.0021 17.1 2.7 0.3 10.0 0.0 2.3 1 1 1 2 2 2 2 KAP family P-loop domain NB-ARC PF00931.17 gi|147920456|ref|YP_685753.1| - 0.0028 16.5 0.0 0.0045 15.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.4 gi|147920456|ref|YP_685753.1| - 0.0038 16.2 0.0 0.0056 15.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|147920456|ref|YP_685753.1| - 0.0055 16.3 1.2 0.013 15.1 0.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|147920456|ref|YP_685753.1| - 0.01 16.1 4.1 0.089 13.1 2.8 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|147920456|ref|YP_685753.1| - 0.014 14.8 0.1 0.089 12.2 0.0 2.1 3 0 0 3 3 2 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|147920456|ref|YP_685753.1| - 0.016 14.6 0.0 0.059 12.8 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zot PF05707.7 gi|147920456|ref|YP_685753.1| - 0.017 14.5 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_17 PF13207.1 gi|147920456|ref|YP_685753.1| - 0.023 15.5 0.7 0.054 14.3 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|147920456|ref|YP_685753.1| - 0.036 13.7 0.2 0.15 11.7 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) PIF1 PF05970.9 gi|147920456|ref|YP_685753.1| - 0.047 12.6 0.0 0.079 11.8 0.0 1.5 1 1 0 1 1 1 0 PIF1-like helicase AIG1 PF04548.11 gi|147920456|ref|YP_685753.1| - 0.063 12.3 0.3 0.36 9.9 0.0 2.2 2 0 0 2 2 2 0 AIG1 family AAA_2 PF07724.9 gi|147920456|ref|YP_685753.1| - 0.071 13.0 4.9 0.44 10.4 1.3 2.9 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_11 PF13086.1 gi|147920456|ref|YP_685753.1| - 0.077 12.5 0.1 0.15 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|147920456|ref|YP_685753.1| - 0.12 12.5 0.0 0.42 10.8 0.0 1.9 2 0 0 2 2 1 0 RNA helicase MobB PF03205.9 gi|147920456|ref|YP_685753.1| - 0.16 11.7 0.6 1.5 8.5 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Metallophos_2 PF12850.2 gi|147920457|ref|YP_685752.1| - 1.3e-22 80.3 0.0 1.8e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147920457|ref|YP_685752.1| - 3.2e-16 59.3 0.0 4.5e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|147920457|ref|YP_685752.1| - 1.1e-08 34.5 0.0 0.00022 20.4 0.0 2.4 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily IMPDH PF00478.20 gi|147920457|ref|YP_685752.1| - 0.039 12.8 0.0 0.052 12.4 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain APH PF01636.18 gi|147920458|ref|YP_685751.1| - 0.00075 19.2 0.7 0.0011 18.7 0.1 1.6 2 0 0 2 2 2 1 Phosphotransferase enzyme family HD_4 PF13328.1 gi|147920459|ref|YP_685750.1| - 1.4e-12 47.6 0.0 1.6e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 HD domain PRiA4_ORF3 PF07929.6 gi|147920460|ref|YP_685749.1| - 1.3e-30 106.1 0.0 1.7e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein tRNA-synt_1f PF01921.13 gi|147920461|ref|YP_685748.1| - 5.5e-91 304.9 0.2 1.1e-90 303.9 0.2 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|147920461|ref|YP_685748.1| - 0.1 11.2 0.2 0.28 9.8 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (M) TIM21 PF08294.6 gi|147920462|ref|YP_685747.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 TIM21 Peptidase_S8 PF00082.17 gi|147920463|ref|YP_685746.1| - 5.4e-49 166.8 12.9 5.4e-49 166.8 9.0 1.8 2 0 0 2 2 2 1 Subtilase family PPC PF04151.10 gi|147920463|ref|YP_685746.1| - 0.046 14.6 1.3 0.046 14.6 0.9 4.9 3 2 2 5 5 5 0 Bacterial pre-peptidase C-terminal domain DUF1518 PF07469.7 gi|147920463|ref|YP_685746.1| - 7.7 6.7 6.7 11 6.2 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1518) Hexapep PF00132.19 gi|147920464|ref|YP_685744.1| - 3.1e-18 64.3 12.3 1.4e-10 40.1 1.8 3.8 3 1 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|147920464|ref|YP_685744.1| - 0.00015 21.2 15.3 0.0023 17.4 3.4 3.8 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase CTP_transf_2 PF01467.21 gi|147920465|ref|YP_685743.1| - 1.7e-11 44.3 0.0 3.2e-11 43.5 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase NTPase_I-T PF01931.13 gi|147920466|ref|YP_685742.1| - 5.6e-57 192.1 0.0 6.3e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 TGF_beta_GS PF08515.7 gi|147920466|ref|YP_685742.1| - 1.1 8.6 3.3 0.41 10.0 0.2 1.8 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif Pur_DNA_glyco PF02245.11 gi|147920467|ref|YP_685741.1| - 3.5e-72 241.4 0.0 3.9e-72 241.2 0.0 1.0 1 0 0 1 1 1 1 Methylpurine-DNA glycosylase (MPG) HTH_42 PF06224.7 gi|147920469|ref|YP_685739.1| - 1.1e-64 218.8 0.6 1.3e-64 218.5 0.4 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Arg_repressor PF01316.16 gi|147920469|ref|YP_685739.1| - 0.0072 15.8 0.0 0.038 13.5 0.0 2.1 2 0 0 2 2 2 1 Arginine repressor, DNA binding domain HTH_20 PF12840.2 gi|147920470|ref|YP_685738.1| - 3.6e-11 42.7 0.1 1.1e-10 41.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|147920470|ref|YP_685738.1| - 1.7e-06 27.6 0.0 3.4e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|147920470|ref|YP_685738.1| - 2.9e-06 26.5 0.0 5.2e-05 22.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|147920470|ref|YP_685738.1| - 5.9e-05 22.6 0.7 0.00013 21.5 0.2 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|147920470|ref|YP_685738.1| - 0.00017 21.1 0.0 0.0004 19.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|147920470|ref|YP_685738.1| - 0.0003 20.2 0.0 0.00059 19.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147920470|ref|YP_685738.1| - 0.00036 19.9 0.4 0.0037 16.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 PadR PF03551.9 gi|147920470|ref|YP_685738.1| - 0.001 18.8 0.6 0.0027 17.4 0.1 1.9 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family TetR_N PF00440.18 gi|147920470|ref|YP_685738.1| - 0.0085 15.7 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Rrf2 PF02082.15 gi|147920470|ref|YP_685738.1| - 0.0095 16.0 0.1 0.78 9.8 0.0 2.8 3 0 0 3 3 3 1 Transcriptional regulator HTH_27 PF13463.1 gi|147920470|ref|YP_685738.1| - 0.014 15.7 0.0 0.057 13.7 0.0 2.1 3 0 0 3 3 2 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|147920470|ref|YP_685738.1| - 0.024 14.6 0.1 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|147920470|ref|YP_685738.1| - 0.026 14.2 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.7 gi|147920470|ref|YP_685738.1| - 0.03 14.1 0.0 0.073 12.9 0.0 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|147920470|ref|YP_685738.1| - 0.032 14.2 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|147920470|ref|YP_685738.1| - 0.051 13.7 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_1 PF00126.22 gi|147920470|ref|YP_685738.1| - 0.053 13.2 0.0 0.51 10.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.1 gi|147920470|ref|YP_685738.1| - 0.089 12.5 0.0 7.8 6.3 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|147920470|ref|YP_685738.1| - 0.1 12.5 0.5 0.47 10.4 0.0 2.2 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF4357 PF14267.1 gi|147920470|ref|YP_685738.1| - 0.16 11.6 0.2 0.53 9.9 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4357) Abhydrolase_6 PF12697.2 gi|147920471|ref|YP_685737.1| - 1.4e-15 57.7 0.0 1.7e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|147920471|ref|YP_685737.1| - 1.4e-09 37.8 0.0 2.6e-09 37.0 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|147920471|ref|YP_685737.1| - 0.019 14.1 0.0 0.58 9.3 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|147920471|ref|YP_685737.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Fasciclin PF02469.17 gi|147920472|ref|YP_685736.1| - 1.2e-27 96.4 0.0 2.1e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Fasciclin domain DUF4381 PF14316.1 gi|147920472|ref|YP_685736.1| - 0.0098 15.9 0.3 0.022 14.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4381) TrbC PF04956.8 gi|147920472|ref|YP_685736.1| - 0.013 15.4 1.1 0.75 9.8 0.1 3.1 3 1 0 3 3 3 0 TrbC/VIRB2 family DUF4366 PF14283.1 gi|147920472|ref|YP_685736.1| - 0.018 14.4 0.3 0.59 9.5 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4366) CcmH PF03918.9 gi|147920472|ref|YP_685736.1| - 0.11 11.4 0.5 0.21 10.5 0.0 1.7 2 0 0 2 2 2 0 Cytochrome C biogenesis protein Spore_YhaL PF14147.1 gi|147920472|ref|YP_685736.1| - 0.16 11.3 0.1 0.49 9.8 0.0 1.8 1 0 0 1 1 1 0 Sporulation protein YhaL eIF-1a PF01176.14 gi|147920473|ref|YP_685735.1| - 8.3e-23 79.5 1.0 1.1e-22 79.1 0.7 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DnaJ PF00226.26 gi|147920475|ref|YP_685733.1| - 6.7e-20 70.6 0.8 1.2e-19 69.7 0.6 1.4 1 0 0 1 1 1 1 DnaJ domain HEAT_2 PF13646.1 gi|147920475|ref|YP_685733.1| - 1.2e-15 57.5 0.1 3.3e-13 49.7 0.0 2.4 1 1 1 2 2 2 2 HEAT repeats CarboxypepD_reg PF13620.1 gi|147920475|ref|YP_685733.1| - 5.6e-06 26.3 0.7 1.3e-05 25.1 0.5 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain zf-AN1 PF01428.11 gi|147920475|ref|YP_685733.1| - 9.5e-06 25.3 17.5 3.9e-05 23.4 5.9 2.5 2 0 0 2 2 2 2 AN1-like Zinc finger Cna_B PF05738.8 gi|147920475|ref|YP_685733.1| - 4.4e-05 23.1 0.6 0.00011 21.9 0.1 1.9 2 0 0 2 2 2 1 Cna protein B-type domain phage_tail_N PF08400.5 gi|147920475|ref|YP_685733.1| - 0.00011 21.9 0.7 0.00026 20.6 0.5 1.7 1 0 0 1 1 1 1 Prophage tail fibre N-terminal HEAT_PBS PF03130.11 gi|147920475|ref|YP_685733.1| - 0.0003 20.9 0.1 2.1 9.0 0.0 3.2 3 0 0 3 3 3 2 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|147920475|ref|YP_685733.1| - 0.002 18.0 0.2 0.69 10.1 0.0 3.3 3 0 0 3 3 3 1 HEAT repeat Arm PF00514.18 gi|147920475|ref|YP_685733.1| - 0.0048 16.6 0.4 9.6 6.2 0.1 3.3 3 0 0 3 3 3 1 Armadillo/beta-catenin-like repeat fn3_3 PF14686.1 gi|147920475|ref|YP_685733.1| - 0.0048 16.9 1.1 0.011 15.8 0.8 1.7 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II DUF4480 PF13715.1 gi|147920475|ref|YP_685733.1| - 0.0056 16.7 0.1 0.016 15.2 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4480) DUF2012 PF09430.5 gi|147920475|ref|YP_685733.1| - 0.023 14.5 0.5 1.4 8.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2012) HEAT_EZ PF13513.1 gi|147920475|ref|YP_685733.1| - 0.056 13.9 0.2 4.6 7.8 0.0 3.1 1 1 2 3 3 3 0 HEAT-like repeat FYVE PF01363.16 gi|147920475|ref|YP_685733.1| - 0.37 10.7 13.3 8.2 6.4 1.8 2.4 1 1 1 2 2 2 0 FYVE zinc finger 2_5_RNA_ligase2 PF13563.1 gi|147920477|ref|YP_685731.1| - 1.3e-26 93.1 0.0 1.7e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily Metallophos_2 PF12850.2 gi|147920477|ref|YP_685731.1| - 1e-05 25.4 0.4 7.5e-05 22.6 0.2 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147920477|ref|YP_685731.1| - 0.00011 21.7 5.7 0.0002 20.8 3.9 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase LigT_PEase PF02834.11 gi|147920477|ref|YP_685731.1| - 0.00089 19.1 0.0 0.34 10.9 0.0 2.3 2 0 0 2 2 2 2 LigT like Phosphoesterase CPDase PF07823.6 gi|147920477|ref|YP_685731.1| - 0.011 15.2 0.0 0.73 9.2 0.0 2.2 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein WSN PF02206.13 gi|147920477|ref|YP_685731.1| - 0.017 14.8 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF3970 PF13113.1 gi|147920477|ref|YP_685731.1| - 0.063 12.9 3.2 22 4.8 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3970) Polysacc_synt PF01943.12 gi|147920479|ref|YP_685728.1| - 1.6e-08 34.1 31.5 1.6e-08 34.1 21.8 2.1 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|147920479|ref|YP_685728.1| - 0.026 14.0 53.2 0.023 14.1 20.8 3.8 1 1 1 2 2 2 0 Polysaccharide biosynthesis protein HATPase_c PF02518.21 gi|147920480|ref|YP_685727.1| - 3.2e-22 78.3 0.0 6.5e-22 77.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147920480|ref|YP_685727.1| - 2.6e-13 50.2 0.0 1.5e-12 47.7 0.0 2.4 2 0 0 2 2 2 1 PAS domain HAMP PF00672.20 gi|147920480|ref|YP_685727.1| - 3.5e-13 49.5 2.9 1.1e-12 47.9 0.1 2.7 1 1 1 2 2 2 1 HAMP domain PAS_3 PF08447.6 gi|147920480|ref|YP_685727.1| - 7.4e-11 42.0 0.0 2e-10 40.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|147920480|ref|YP_685727.1| - 1.6e-08 34.3 0.0 2.1e-07 30.6 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|147920480|ref|YP_685727.1| - 5.6e-07 29.5 0.0 3.6e-05 23.7 0.0 2.6 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|147920480|ref|YP_685727.1| - 3.6e-05 23.5 0.0 8.6e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cache_1 PF02743.13 gi|147920480|ref|YP_685727.1| - 8.6e-05 22.0 0.1 0.00034 20.0 0.0 2.0 2 0 0 2 2 2 1 Cache domain PAS_8 PF13188.1 gi|147920480|ref|YP_685727.1| - 0.00067 19.4 0.0 0.0021 17.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|147920480|ref|YP_685727.1| - 0.0035 17.0 0.0 0.012 15.3 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.1 gi|147920480|ref|YP_685727.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1045 PF06299.7 gi|147920480|ref|YP_685727.1| - 0.018 14.7 0.5 0.033 13.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1045) SIMPL PF04402.9 gi|147920480|ref|YP_685727.1| - 0.1 12.4 0.2 0.2 11.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF541) Cache_3 PF14827.1 gi|147920480|ref|YP_685727.1| - 0.1 12.4 0.1 0.43 10.5 0.1 2.0 1 0 0 1 1 1 0 Sensory domain of two-component sensor kinase DUF204 PF02659.10 gi|147920480|ref|YP_685727.1| - 0.36 10.9 7.1 0.048 13.7 1.7 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF MEDS PF14417.1 gi|147920481|ref|YP_685726.1| - 4.7e-75 250.8 0.0 1.3e-74 249.4 0.0 1.8 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PAS PF00989.19 gi|147920481|ref|YP_685726.1| - 1.7e-26 92.2 0.0 8.6e-12 44.8 0.0 3.3 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|147920481|ref|YP_685726.1| - 8.3e-25 87.1 0.0 1.7e-15 57.2 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|147920481|ref|YP_685726.1| - 8.7e-22 76.9 0.0 2.4e-21 75.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|147920481|ref|YP_685726.1| - 5.3e-18 64.9 0.0 1.6e-10 40.9 0.0 3.4 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.5 gi|147920481|ref|YP_685726.1| - 7.9e-16 58.0 0.0 9.7e-09 35.2 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|147920481|ref|YP_685726.1| - 6.1e-09 35.4 0.0 3.5e-05 23.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|147920481|ref|YP_685726.1| - 1.8e-06 27.8 0.0 6.3e-06 26.1 0.0 1.9 2 0 0 2 2 1 1 PAS domain HATPase_c_3 PF13589.1 gi|147920481|ref|YP_685726.1| - 0.00029 20.4 0.1 0.0011 18.6 0.0 2.0 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|147920481|ref|YP_685726.1| - 0.0078 16.0 0.0 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|147920481|ref|YP_685726.1| - 0.028 14.0 0.1 0.13 12.0 0.0 2.1 2 0 0 2 2 2 0 GHKL domain PAS_7 PF12860.2 gi|147920481|ref|YP_685726.1| - 0.036 14.0 0.1 0.6 10.1 0.0 2.9 2 1 0 2 2 2 0 PAS fold DRY_EERY PF09750.4 gi|147920481|ref|YP_685726.1| - 0.068 13.2 0.4 4.5 7.3 0.1 2.4 2 0 0 2 2 2 0 Alternative splicing regulator PAS_4 PF08448.5 gi|147920482|ref|YP_685725.1| - 1.3e-22 79.9 0.0 4.9e-11 42.6 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|147920482|ref|YP_685725.1| - 1.8e-22 79.6 0.0 5.8e-13 49.1 0.0 2.7 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|147920482|ref|YP_685725.1| - 2.2e-21 75.6 0.0 5.7e-21 74.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|147920482|ref|YP_685725.1| - 5e-11 42.3 0.4 1.6e-08 34.2 0.0 2.8 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|147920482|ref|YP_685725.1| - 3.1e-10 39.5 0.0 1.4e-06 27.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|147920482|ref|YP_685725.1| - 4.3e-05 23.7 0.0 0.12 12.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c_5 PF14501.1 gi|147920482|ref|YP_685725.1| - 8.7e-05 22.1 0.0 0.0003 20.4 0.0 1.8 2 0 0 2 2 2 1 GHKL domain HisKA PF00512.20 gi|147920482|ref|YP_685725.1| - 0.0003 20.7 0.6 0.00065 19.6 0.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|147920482|ref|YP_685725.1| - 0.0011 19.0 0.5 0.0058 16.6 0.0 2.5 4 0 0 4 4 4 1 PAS fold MEKHLA PF08670.6 gi|147920482|ref|YP_685725.1| - 0.0014 18.1 0.0 0.0034 16.9 0.0 1.6 1 0 0 1 1 1 1 MEKHLA domain PAS_7 PF12860.2 gi|147920482|ref|YP_685725.1| - 0.0051 16.8 0.2 12 5.9 0.0 3.6 3 1 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|147920482|ref|YP_685725.1| - 0.0073 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Thioredoxin PF00085.15 gi|147920483|ref|YP_685724.1| - 6.1e-29 99.7 0.0 7.1e-29 99.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|147920483|ref|YP_685724.1| - 2.9e-10 40.3 0.1 1.7e-09 37.8 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|147920483|ref|YP_685724.1| - 7e-07 29.2 0.0 4.5e-05 23.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Redoxin PF08534.5 gi|147920483|ref|YP_685724.1| - 1.8e-05 24.2 0.0 2.2e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_9 PF14595.1 gi|147920483|ref|YP_685724.1| - 2.5e-05 23.8 0.0 2.8e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|147920483|ref|YP_685724.1| - 0.001 19.0 0.0 0.0014 18.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|147920483|ref|YP_685724.1| - 0.0037 17.0 0.0 0.015 15.1 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|147920483|ref|YP_685724.1| - 0.004 16.8 0.1 0.03 14.0 0.0 1.8 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_6 PF13848.1 gi|147920483|ref|YP_685724.1| - 0.027 14.2 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin PF00085.15 gi|147920484|ref|YP_685723.1| - 3.1e-30 103.9 0.0 3.8e-30 103.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|147920484|ref|YP_685723.1| - 5.5e-10 39.4 0.2 4.9e-09 36.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|147920484|ref|YP_685723.1| - 6.5e-06 26.1 0.0 0.00092 19.2 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|147920484|ref|YP_685723.1| - 7.5e-06 25.5 0.0 8.5e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|147920484|ref|YP_685723.1| - 0.0007 19.1 0.1 0.0012 18.4 0.1 1.3 1 1 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|147920484|ref|YP_685723.1| - 0.0024 17.5 0.1 0.004 16.8 0.1 1.3 1 1 0 1 1 1 1 AhpC/TSA family HyaE PF07449.6 gi|147920484|ref|YP_685723.1| - 0.0082 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.1 gi|147920484|ref|YP_685723.1| - 0.018 15.0 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_6 PF13848.1 gi|147920484|ref|YP_685723.1| - 0.026 14.3 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|147920484|ref|YP_685723.1| - 0.042 13.6 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain TP6A_N PF04406.9 gi|147920485|ref|YP_685722.1| - 1.5e-24 85.4 0.3 2.5e-24 84.6 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|147920486|ref|YP_685721.1| - 1.7e-42 144.6 0.0 3e-42 143.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|147920486|ref|YP_685721.1| - 1.4e-09 37.6 0.1 3.2e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|147920486|ref|YP_685721.1| - 2.3e-08 33.7 0.0 4.3e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LUC7 PF03194.10 gi|147920486|ref|YP_685721.1| - 0.0089 15.5 0.1 0.018 14.6 0.1 1.4 1 0 0 1 1 1 1 LUC7 N_terminus HTH_42 PF06224.7 gi|147920487|ref|YP_685720.1| - 2.4e-62 211.2 7.3 2.8e-62 210.9 5.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HATPase_c_4 PF13749.1 gi|147920487|ref|YP_685720.1| - 0.086 12.6 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 ATP-dependent DNA helicase recG C-terminal ABC2_membrane_3 PF12698.2 gi|147920488|ref|YP_685719.1| - 2.7e-09 36.5 18.8 2.7e-09 36.5 13.0 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920488|ref|YP_685719.1| - 2e-05 23.9 19.9 3.1e-05 23.2 13.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920489|ref|YP_685718.1| - 3.3e-10 39.5 27.5 3.3e-10 39.5 19.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920489|ref|YP_685718.1| - 0.013 14.6 29.0 0.025 13.7 20.1 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4408 PF14364.1 gi|147920489|ref|YP_685718.1| - 0.29 10.7 3.6 0.95 9.0 1.2 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4408) ABC_tran PF00005.22 gi|147920490|ref|YP_685717.1| - 3.2e-27 95.4 0.0 5.4e-27 94.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920490|ref|YP_685717.1| - 2e-12 47.7 1.3 2.2e-11 44.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|147920490|ref|YP_685717.1| - 0.0019 17.6 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|147920490|ref|YP_685717.1| - 0.0037 16.4 0.0 0.0068 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 DUF4162 PF13732.1 gi|147920490|ref|YP_685717.1| - 0.0038 17.6 0.1 0.0095 16.4 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|147920490|ref|YP_685717.1| - 0.022 15.0 0.3 0.034 14.4 0.2 1.5 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|147920490|ref|YP_685717.1| - 0.03 13.0 0.1 0.047 12.4 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|147920490|ref|YP_685717.1| - 0.038 13.5 0.1 0.078 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|147920490|ref|YP_685717.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TetR_N PF00440.18 gi|147920491|ref|YP_685716.1| - 3.5e-13 48.9 0.0 7.2e-13 47.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family LacI PF00356.16 gi|147920491|ref|YP_685716.1| - 0.013 15.1 0.1 0.028 14.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_7 PF02796.10 gi|147920491|ref|YP_685716.1| - 0.068 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Arch_ATPase PF01637.13 gi|147920492|ref|YP_685715.1| - 7.2e-07 29.1 0.0 1.5e-06 28.1 0.0 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|147920492|ref|YP_685715.1| - 1.8e-05 24.7 0.0 0.00057 19.9 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain KAP_NTPase PF07693.9 gi|147920492|ref|YP_685715.1| - 7.5e-05 21.8 0.1 0.00015 20.8 0.0 1.6 2 0 0 2 2 2 1 KAP family P-loop domain Penicillinase_R PF03965.11 gi|147920492|ref|YP_685715.1| - 0.00034 20.6 0.1 0.0011 19.0 0.0 1.8 1 0 0 1 1 1 1 Penicillinase repressor AAA_22 PF13401.1 gi|147920492|ref|YP_685715.1| - 0.00084 19.4 0.0 0.0035 17.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|147920492|ref|YP_685715.1| - 0.009 14.6 0.0 0.019 13.6 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|147920492|ref|YP_685715.1| - 0.0099 16.0 0.0 0.13 12.4 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|147920492|ref|YP_685715.1| - 0.033 13.5 0.2 5.7 6.3 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|147920492|ref|YP_685715.1| - 0.04 13.8 0.0 0.98 9.3 0.0 2.6 1 1 0 1 1 1 0 AAA domain MarR_2 PF12802.2 gi|147920492|ref|YP_685715.1| - 0.058 13.0 0.2 0.19 11.3 0.2 1.9 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|147920492|ref|YP_685715.1| - 0.078 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF2324 PF10086.4 gi|147920493|ref|YP_685714.1| - 7.4e-42 143.0 19.5 9.2e-42 142.7 13.5 1.1 1 0 0 1 1 1 1 Putative membrane peptidase family (DUF2324) DUF2592 PF10766.4 gi|147920493|ref|YP_685714.1| - 0.41 10.0 0.1 0.41 10.0 0.1 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2592) NuA4 PF09340.5 gi|147920494|ref|YP_685713.1| - 0.0019 17.8 0.0 0.0025 17.4 0.0 1.2 1 0 0 1 1 1 1 Histone acetyltransferase subunit NuA4 MecA_N PF05223.6 gi|147920494|ref|YP_685713.1| - 0.026 14.5 0.1 0.036 14.1 0.0 1.2 1 0 0 1 1 1 0 NTF2-like N-terminal transpeptidase domain Lumazine_bd PF12870.2 gi|147920494|ref|YP_685713.1| - 0.031 14.3 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Lumazine-binding domain HTH_IclR PF09339.5 gi|147920495|ref|YP_685711.1| - 1.1e-05 24.9 0.0 1.7e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_9 PF08221.6 gi|147920495|ref|YP_685711.1| - 0.0024 17.6 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.1 gi|147920495|ref|YP_685711.1| - 0.0031 16.8 0.0 0.0049 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|147920495|ref|YP_685711.1| - 0.0069 16.0 0.0 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|147920495|ref|YP_685711.1| - 0.0084 16.2 0.0 0.022 14.8 0.0 1.7 1 1 1 2 2 2 1 Transcriptional regulator HTH_5 PF01022.15 gi|147920495|ref|YP_685711.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|147920495|ref|YP_685711.1| - 0.015 15.0 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|147920495|ref|YP_685711.1| - 0.029 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|147920495|ref|YP_685711.1| - 0.075 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.2 gi|147920495|ref|YP_685711.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.18 gi|147920495|ref|YP_685711.1| - 0.34 10.5 0.1 0.34 10.5 0.0 2.0 3 0 0 3 3 3 0 MerR family regulatory protein Glycos_transf_1 PF00534.15 gi|147920496|ref|YP_685710.1| - 1.2e-37 128.9 0.0 1.1e-36 125.8 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147920496|ref|YP_685710.1| - 2.2e-22 79.6 0.1 3.1e-21 75.9 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147920496|ref|YP_685710.1| - 6.5e-19 68.6 0.0 9.8e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|147920496|ref|YP_685710.1| - 9.5e-14 51.5 0.0 1.4e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|147920496|ref|YP_685710.1| - 2.9e-09 37.0 0.0 8.9e-09 35.5 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147920496|ref|YP_685710.1| - 3.5e-06 26.9 0.0 7.8e-06 25.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Auto_anti-p27 PF06677.7 gi|147920497|ref|YP_685709.1| - 1.2e-12 47.4 4.4 1.8e-12 46.7 3.0 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF165 PF02592.10 gi|147920498|ref|YP_685708.1| - 0.33 11.1 10.2 0.65 10.1 5.0 2.3 1 1 0 1 1 1 0 Uncharacterized ACR, YhhQ family COG1738 TcpE PF12648.2 gi|147920498|ref|YP_685708.1| - 1.3 9.1 4.4 13 5.9 0.2 2.2 2 0 0 2 2 2 0 TcpE family CopD PF05425.8 gi|147920498|ref|YP_685708.1| - 1.4 9.1 10.8 0.15 12.3 4.6 1.5 2 0 0 2 2 2 0 Copper resistance protein D UPF0147 PF03685.8 gi|147920499|ref|YP_685707.1| - 2.1e-37 126.8 3.8 2.3e-37 126.7 2.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|147920499|ref|YP_685707.1| - 0.0065 16.5 0.3 2.5 8.2 0.1 2.1 1 1 0 2 2 2 2 Uncharacterised protein family (UPF0253) RLAN PF14401.1 gi|147920500|ref|YP_685706.1| - 1e-39 135.4 0.0 1.4e-39 135.0 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATPgrasp N-terminal domain RimK PF08443.6 gi|147920501|ref|YP_685705.1| - 3.4e-13 49.4 0.0 9.7e-13 48.0 0.0 1.8 2 1 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|147920501|ref|YP_685705.1| - 1.1e-07 31.7 0.0 3.1e-07 30.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|147920501|ref|YP_685705.1| - 1.6e-05 24.3 0.0 2.9e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus DUF4343 PF14243.1 gi|147920501|ref|YP_685705.1| - 0.00055 19.7 0.0 0.0013 18.5 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4343) ATP-grasp_3 PF02655.9 gi|147920501|ref|YP_685705.1| - 0.00058 19.7 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|147920501|ref|YP_685705.1| - 0.044 12.5 0.0 5.6 5.5 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon Ferritin PF00210.19 gi|147920502|ref|YP_685704.1| - 6.1e-28 97.3 0.4 6.6e-28 97.2 0.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|147920502|ref|YP_685704.1| - 1.8e-11 44.5 0.2 3.4e-11 43.5 0.2 1.4 1 1 0 1 1 1 1 Rubrerythrin Ferritin-like PF12902.2 gi|147920502|ref|YP_685704.1| - 0.00055 19.6 0.0 0.0027 17.3 0.0 1.8 1 1 1 2 2 2 1 Ferritin-like Ferritin_2 PF13668.1 gi|147920502|ref|YP_685704.1| - 0.0025 17.7 0.3 0.28 11.1 0.2 2.1 1 1 0 1 1 1 1 Ferritin-like domain DUF455 PF04305.9 gi|147920502|ref|YP_685704.1| - 0.011 15.0 0.4 0.029 13.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF455) Phenol_Hydrox PF02332.13 gi|147920502|ref|YP_685704.1| - 0.037 13.3 0.0 0.06 12.6 0.0 1.4 1 0 0 1 1 1 0 Methane/Phenol/Toluene Hydroxylase DUF2383 PF09537.5 gi|147920502|ref|YP_685704.1| - 0.049 13.8 0.1 2.7 8.2 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF2383) MiaE_2 PF13794.1 gi|147920502|ref|YP_685704.1| - 0.13 11.6 0.2 2.2 7.7 0.1 2.0 1 1 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like DUF2769 PF10967.3 gi|147920503|ref|YP_685703.1| - 2.2e-15 56.7 13.9 2.8e-15 56.3 9.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Cys_rich_CWC PF14375.1 gi|147920503|ref|YP_685703.1| - 1.1 9.1 11.2 2.6 8.0 7.8 1.6 1 1 0 1 1 1 0 Cysteine-rich CWC Ribosomal_S19e PF01090.14 gi|147920505|ref|YP_685701.1| - 9.2e-57 190.3 0.0 1.1e-56 190.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.1 gi|147920505|ref|YP_685701.1| - 0.029 14.1 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix RuvB_C PF05491.8 gi|147920505|ref|YP_685701.1| - 0.04 13.5 0.0 4.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus dsDNA_bind PF01984.15 gi|147920506|ref|YP_685700.1| - 2.3e-30 104.7 18.1 2.6e-30 104.5 12.6 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain FAM47 PF14642.1 gi|147920506|ref|YP_685700.1| - 0.021 14.1 0.2 0.022 14.0 0.1 1.1 1 0 0 1 1 1 0 FAM47 family ECH_C PF13766.1 gi|147920506|ref|YP_685700.1| - 0.028 14.5 0.5 0.066 13.3 0.3 1.6 1 1 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region Asn_synthase PF00733.16 gi|147920507|ref|YP_685699.1| - 0.0027 17.2 0.0 0.0052 16.3 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_4 PF01902.12 gi|147920507|ref|YP_685699.1| - 0.0046 16.3 0.0 0.0079 15.5 0.0 1.4 1 0 0 1 1 1 1 ATP-binding region ATP_bind_3 PF01171.15 gi|147920507|ref|YP_685699.1| - 0.053 13.0 0.0 1.3 8.4 0.0 2.3 2 1 0 2 2 2 0 PP-loop family tRNA_Me_trans PF03054.11 gi|147920507|ref|YP_685699.1| - 0.1 11.1 0.0 0.14 10.6 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Ribosomal_L31e PF01198.14 gi|147920508|ref|YP_685698.1| - 5.7e-27 93.2 1.7 6.6e-27 93.0 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e ING PF12998.2 gi|147920508|ref|YP_685698.1| - 0.066 13.5 0.2 0.078 13.2 0.1 1.2 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding eIF-6 PF01912.13 gi|147920509|ref|YP_685697.1| - 1.2e-70 236.6 0.6 1.5e-70 236.3 0.4 1.1 1 0 0 1 1 1 1 eIF-6 family dCMP_cyt_deam_2 PF08211.6 gi|147920509|ref|YP_685697.1| - 0.048 13.6 0.2 0.53 10.3 0.0 2.1 2 0 0 2 2 2 0 Cytidine and deoxycytidylate deaminase zinc-binding region Ribosomal_L18ae PF01775.12 gi|147920510|ref|YP_685696.1| - 2.3e-09 37.1 0.3 2.5e-09 37.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain NmrA PF05368.8 gi|147920510|ref|YP_685696.1| - 0.0085 15.3 0.5 0.0093 15.2 0.3 1.0 1 0 0 1 1 1 1 NmrA-like family Prefoldin PF02996.12 gi|147920511|ref|YP_685695.1| - 2.7e-27 94.7 0.3 4.1e-27 94.2 0.1 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|147920511|ref|YP_685695.1| - 2e-05 24.3 2.8 0.0024 17.6 0.1 2.1 2 0 0 2 2 2 2 Prefoldin subunit Syntaxin PF00804.20 gi|147920511|ref|YP_685695.1| - 0.0026 17.8 0.0 0.0083 16.2 0.0 1.8 1 1 0 1 1 1 1 Syntaxin DUF1664 PF07889.7 gi|147920511|ref|YP_685695.1| - 0.0081 15.9 1.4 0.55 10.0 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) CASP_C PF08172.7 gi|147920511|ref|YP_685695.1| - 0.009 15.0 0.1 0.011 14.7 0.0 1.1 1 0 0 1 1 1 1 CASP C terminal HhH-GPD PF00730.20 gi|147920511|ref|YP_685695.1| - 0.01 16.0 0.1 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HAUS-augmin3 PF14932.1 gi|147920511|ref|YP_685695.1| - 0.024 13.8 6.0 0.18 10.9 0.3 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 MerR-DNA-bind PF09278.6 gi|147920511|ref|YP_685695.1| - 0.032 14.6 2.1 7.8 6.9 0.7 2.3 2 0 0 2 2 2 0 MerR, DNA binding Acyl-CoA_dh_C PF12806.2 gi|147920511|ref|YP_685695.1| - 0.084 12.7 1.9 6.8 6.5 0.2 2.1 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Sec2p PF06428.6 gi|147920511|ref|YP_685695.1| - 0.098 12.5 0.7 0.098 12.5 0.5 2.0 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p DUF3584 PF12128.3 gi|147920511|ref|YP_685695.1| - 0.11 9.8 3.8 0.6 7.3 2.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Tropomyosin_1 PF12718.2 gi|147920511|ref|YP_685695.1| - 0.12 12.1 0.3 0.12 12.1 0.2 2.0 2 0 0 2 2 2 0 Tropomyosin like Seryl_tRNA_N PF02403.17 gi|147920511|ref|YP_685695.1| - 0.16 12.0 4.4 0.2 11.7 0.3 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain PspA_IM30 PF04012.7 gi|147920511|ref|YP_685695.1| - 0.25 10.6 10.6 0.52 9.6 2.4 2.0 2 0 0 2 2 2 0 PspA/IM30 family RmuC PF02646.11 gi|147920511|ref|YP_685695.1| - 0.3 9.8 3.6 1.1 7.9 0.4 2.0 2 0 0 2 2 2 0 RmuC family DUF2968 PF11180.3 gi|147920511|ref|YP_685695.1| - 0.3 10.4 6.9 3.7 6.8 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) AAA_27 PF13514.1 gi|147920511|ref|YP_685695.1| - 0.34 8.5 6.7 1.2 6.7 3.1 1.9 1 1 1 2 2 2 0 AAA domain FliJ PF02050.11 gi|147920511|ref|YP_685695.1| - 0.35 10.9 10.3 2.8 8.0 1.6 2.3 2 0 0 2 2 2 0 Flagellar FliJ protein TBPIP PF07106.8 gi|147920511|ref|YP_685695.1| - 0.35 10.4 2.7 0.37 10.3 0.2 1.8 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HrpB7 PF09486.5 gi|147920511|ref|YP_685695.1| - 0.42 10.5 7.7 0.88 9.4 0.4 2.2 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF4200 PF13863.1 gi|147920511|ref|YP_685695.1| - 0.54 10.2 7.5 1.3 8.9 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) SlyX PF04102.7 gi|147920511|ref|YP_685695.1| - 0.99 9.8 6.2 6.5 7.2 0.7 2.3 2 0 0 2 2 2 0 SlyX DUF4140 PF13600.1 gi|147920511|ref|YP_685695.1| - 1.5 9.2 6.7 2.4 8.6 1.2 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) OmpH PF03938.9 gi|147920511|ref|YP_685695.1| - 4.5 7.1 10.3 26 4.7 7.1 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) SRP54 PF00448.17 gi|147920512|ref|YP_685694.1| - 1.1e-72 243.6 1.5 1.4e-72 243.2 1.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|147920512|ref|YP_685694.1| - 1.6e-12 47.3 1.9 2e-12 47.0 0.2 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|147920512|ref|YP_685694.1| - 5.8e-06 25.5 0.3 1.1e-05 24.6 0.2 1.5 1 1 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.12 gi|147920512|ref|YP_685694.1| - 1.1e-05 24.9 0.6 0.00045 19.6 0.2 2.4 2 1 0 2 2 2 1 Thymidylate kinase APS_kinase PF01583.15 gi|147920512|ref|YP_685694.1| - 6.1e-05 22.7 0.0 0.00012 21.7 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase MobB PF03205.9 gi|147920512|ref|YP_685694.1| - 6.6e-05 22.6 0.9 0.00016 21.3 0.3 1.8 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|147920512|ref|YP_685694.1| - 0.00018 20.3 0.1 0.00035 19.4 0.1 1.5 1 0 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|147920512|ref|YP_685694.1| - 0.00026 20.6 1.2 0.00066 19.3 0.9 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147920512|ref|YP_685694.1| - 0.00057 20.6 0.2 0.0016 19.2 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|147920512|ref|YP_685694.1| - 0.00069 19.7 0.0 0.0017 18.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|147920512|ref|YP_685694.1| - 0.0021 17.9 0.0 0.0061 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|147920512|ref|YP_685694.1| - 0.0023 16.9 0.3 0.0034 16.3 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) cobW PF02492.14 gi|147920512|ref|YP_685694.1| - 0.0034 16.8 0.6 0.006 16.0 0.4 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|147920512|ref|YP_685694.1| - 0.0041 16.5 3.5 0.028 13.8 2.4 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_16 PF13191.1 gi|147920512|ref|YP_685694.1| - 0.0074 16.2 0.1 0.024 14.6 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|147920512|ref|YP_685694.1| - 0.01 15.8 0.3 0.018 15.0 0.2 1.5 1 1 0 1 1 1 0 AAA domain DUF853 PF05872.7 gi|147920512|ref|YP_685694.1| - 0.012 13.9 0.1 0.37 9.0 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|147920512|ref|YP_685694.1| - 0.015 15.6 0.0 0.034 14.4 0.0 1.7 2 0 0 2 2 1 0 ABC transporter AAA_19 PF13245.1 gi|147920512|ref|YP_685694.1| - 0.031 14.0 0.1 0.078 12.7 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|147920512|ref|YP_685694.1| - 0.033 13.9 0.1 0.062 12.9 0.1 1.4 1 0 0 1 1 1 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|147920512|ref|YP_685694.1| - 0.042 13.7 0.2 0.087 12.7 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|147920512|ref|YP_685694.1| - 0.044 13.5 1.1 0.15 11.7 0.8 1.9 1 1 0 1 1 1 0 NTPase AAA PF00004.24 gi|147920512|ref|YP_685694.1| - 0.057 13.6 0.8 0.28 11.3 0.5 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) LpxK PF02606.9 gi|147920512|ref|YP_685694.1| - 0.071 12.0 0.1 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase ResIII PF04851.10 gi|147920512|ref|YP_685694.1| - 0.082 12.7 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit KTI12 PF08433.5 gi|147920512|ref|YP_685694.1| - 0.095 11.8 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|147920512|ref|YP_685694.1| - 0.097 12.9 0.2 0.21 11.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain PPK2 PF03976.9 gi|147920512|ref|YP_685694.1| - 0.11 11.7 0.0 0.22 10.7 0.0 1.6 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_23 PF13476.1 gi|147920512|ref|YP_685694.1| - 1.3 9.2 3.3 0.45 10.8 0.1 1.8 2 0 0 2 2 1 0 AAA domain HpaP PF09483.5 gi|147920512|ref|YP_685694.1| - 3.2 7.6 9.5 5.8 6.8 6.6 1.3 1 0 0 1 1 1 0 Type III secretion protein (HpaP) MSA-2c PF12238.3 gi|147920512|ref|YP_685694.1| - 4.7 6.8 6.2 9.5 5.8 4.3 1.5 1 0 0 1 1 1 0 Merozoite surface antigen 2c DUF2721 PF11026.3 gi|147920513|ref|YP_685693.1| - 0.01 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Glyco_hydro_15 PF00723.16 gi|147920514|ref|YP_685692.1| - 5e-18 64.8 0.0 9.2e-11 40.9 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|147920514|ref|YP_685692.1| - 4.5e-07 28.9 0.1 2.6e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF608 Glyco_transf_36 PF06165.6 gi|147920514|ref|YP_685692.1| - 0.024 14.4 0.0 0.06 13.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyltransferase family 36 PQQ_3 PF13570.1 gi|147920515|ref|YP_685691.1| - 3.3e-55 182.9 22.7 2.1e-08 34.1 0.0 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|147920515|ref|YP_685691.1| - 6.5e-47 159.9 7.9 4.3e-14 52.5 0.0 4.0 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|147920515|ref|YP_685691.1| - 9.5e-43 141.6 16.2 7e-07 28.4 0.1 7.5 8 0 0 8 8 8 6 PQQ enzyme repeat PepSY_2 PF13670.1 gi|147920515|ref|YP_685691.1| - 0.21 11.4 0.4 0.69 9.8 0.2 1.9 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Laminin_G_3 PF13385.1 gi|147920515|ref|YP_685691.1| - 8.9 6.5 14.9 23 5.2 3.8 3.1 1 1 1 3 3 3 0 Concanavalin A-like lectin/glucanases superfamily Cupin_2 PF07883.6 gi|147920516|ref|YP_685690.1| - 1.5e-15 56.4 0.0 3.7e-07 29.5 0.0 2.4 2 0 0 2 2 2 2 Cupin domain Cupin_1 PF00190.17 gi|147920516|ref|YP_685690.1| - 4.1e-08 32.7 0.0 0.0018 17.6 0.0 2.4 2 0 0 2 2 2 2 Cupin MannoseP_isomer PF01050.13 gi|147920516|ref|YP_685690.1| - 1.2e-05 25.0 0.0 0.0078 15.8 0.0 2.2 2 0 0 2 2 2 2 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|147920516|ref|YP_685690.1| - 1.4e-05 25.0 0.0 0.012 15.5 0.0 2.4 2 0 0 2 2 2 2 Mif2/CENP-C like AraC_binding PF02311.14 gi|147920516|ref|YP_685690.1| - 0.00047 19.8 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 2 AraC-like ligand binding domain DUF4428 PF14471.1 gi|147920516|ref|YP_685690.1| - 0.00058 19.5 1.0 0.5 10.1 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) Cupin_3 PF05899.7 gi|147920516|ref|YP_685690.1| - 0.0007 18.9 0.0 0.22 10.9 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) Zn-ribbon_8 PF09723.5 gi|147920516|ref|YP_685690.1| - 0.0048 16.8 9.1 0.4 10.6 0.7 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Pirin_C PF05726.8 gi|147920516|ref|YP_685690.1| - 0.0048 16.9 0.0 0.18 11.9 0.0 2.3 2 0 0 2 2 2 1 Pirin C-terminal cupin domain DUF2424 PF10340.4 gi|147920516|ref|YP_685690.1| - 0.031 12.8 0.1 0.089 11.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2424) Peptidase_S28 PF05577.7 gi|147920516|ref|YP_685690.1| - 0.055 12.0 0.0 0.21 10.0 0.0 1.7 2 0 0 2 2 2 0 Serine carboxypeptidase S28 KduI PF04962.7 gi|147920516|ref|YP_685690.1| - 0.094 11.7 0.0 1.4 7.9 0.0 2.1 2 0 0 2 2 2 0 KduI/IolB family Lar_restr_allev PF14354.1 gi|147920516|ref|YP_685690.1| - 0.16 12.2 7.7 0.6 10.4 1.2 3.0 2 1 0 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.2 gi|147920516|ref|YP_685690.1| - 0.5 10.2 7.7 0.8 9.5 0.3 2.8 2 1 0 2 2 2 0 Double zinc ribbon Rubredoxin PF00301.15 gi|147920516|ref|YP_685690.1| - 4.8 7.1 9.7 86 3.1 0.2 4.4 4 0 0 4 4 4 0 Rubredoxin Tox-PL PF15644.1 gi|147920517|ref|YP_685689.1| - 0.00038 21.1 0.1 0.07 13.8 0.0 2.8 3 0 0 3 3 3 2 Papain fold toxin 1 CarboxypepD_reg PF13620.1 gi|147920518|ref|YP_685688.1| - 6.6e-20 70.9 11.5 1.4e-09 37.8 0.1 3.5 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920518|ref|YP_685688.1| - 2.7e-11 43.3 2.9 8.3e-06 25.7 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147920518|ref|YP_685688.1| - 6.6e-08 32.1 1.6 0.0019 17.8 0.5 2.7 2 0 0 2 2 2 2 Cna protein B-type domain Dioxygenase_C PF00775.16 gi|147920518|ref|YP_685688.1| - 1.3e-05 24.5 1.7 0.26 10.5 0.1 4.3 3 2 0 3 3 3 2 Dioxygenase DUF2012 PF09430.5 gi|147920518|ref|YP_685688.1| - 0.00021 21.0 0.0 0.69 9.7 0.0 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF2012) DUF1416 PF07210.7 gi|147920518|ref|YP_685688.1| - 0.00053 19.5 0.5 0.38 10.3 0.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) Big_1 PF02369.11 gi|147920518|ref|YP_685688.1| - 0.0081 16.0 4.0 0.26 11.2 0.6 3.2 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|147920518|ref|YP_685688.1| - 0.012 15.2 1.4 44 3.8 0.0 4.2 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) OTCace_N PF02729.16 gi|147920519|ref|YP_685687.1| - 2.9e-47 159.8 0.0 5.3e-46 155.7 0.0 2.1 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|147920519|ref|YP_685687.1| - 1.7e-38 132.0 0.0 2.5e-38 131.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|147920520|ref|YP_685686.1| - 9.5e-37 124.9 0.5 1.3e-36 124.5 0.3 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|147920520|ref|YP_685686.1| - 6.8e-20 70.2 1.1 1.1e-19 69.6 0.7 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF951 PF06107.6 gi|147920520|ref|YP_685686.1| - 0.0073 15.8 0.1 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF951) TF_Zn_Ribbon PF08271.7 gi|147920520|ref|YP_685686.1| - 0.042 13.1 1.3 0.12 11.7 0.9 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding HMG-CoA_red PF00368.13 gi|147920521|ref|YP_685685.1| - 8.9e-145 482.0 5.5 1e-144 481.8 3.8 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase AF2331-like PF14556.1 gi|147920521|ref|YP_685685.1| - 0.12 12.7 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 AF2331-like DDE_Tnp_1 PF01609.16 gi|147920522|ref|YP_685683.1| - 6.7e-06 25.7 0.1 2.4e-05 24.0 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain Archease PF01951.11 gi|147920522|ref|YP_685683.1| - 0.1 12.5 0.1 0.39 10.6 0.0 1.9 2 0 0 2 2 2 0 Archease protein family (MTH1598/TM1083) GCD14 PF08704.5 gi|147920523|ref|YP_685682.1| - 7.6e-16 58.3 0.0 9e-15 54.8 0.0 1.9 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|147920523|ref|YP_685682.1| - 6.9e-11 41.9 0.0 9.4e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920523|ref|YP_685682.1| - 2.9e-10 40.7 0.0 4.1e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|147920523|ref|YP_685682.1| - 3.4e-08 33.2 0.1 4.8e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|147920523|ref|YP_685682.1| - 1.6e-07 31.3 0.1 3.2e-07 30.3 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147920523|ref|YP_685682.1| - 5.3e-07 29.1 0.3 9.7e-07 28.3 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|147920523|ref|YP_685682.1| - 4e-06 26.0 0.0 5.6e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|147920523|ref|YP_685682.1| - 5.7e-05 22.3 0.0 8e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|147920523|ref|YP_685682.1| - 9.2e-05 22.8 0.1 0.00021 21.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|147920523|ref|YP_685682.1| - 0.00053 19.1 0.0 0.00071 18.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_25 PF13649.1 gi|147920523|ref|YP_685682.1| - 0.002 18.4 0.0 0.0043 17.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|147920523|ref|YP_685682.1| - 0.0032 16.8 0.0 0.0048 16.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|147920523|ref|YP_685682.1| - 0.014 15.8 0.1 0.029 14.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|147920523|ref|YP_685682.1| - 0.02 14.4 0.1 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|147920523|ref|YP_685682.1| - 0.057 12.9 0.1 0.077 12.5 0.1 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|147920523|ref|YP_685682.1| - 0.073 12.7 0.0 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|147920523|ref|YP_685682.1| - 0.083 11.9 0.1 0.16 10.9 0.0 1.5 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase NAC PF01849.13 gi|147920524|ref|YP_685681.1| - 2.6e-17 62.0 1.9 7.8e-17 60.5 0.9 1.9 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|147920524|ref|YP_685681.1| - 0.00013 21.6 0.3 0.0017 18.1 0.0 2.3 2 0 0 2 2 2 1 UBA/TS-N domain DUF3867 PF12983.2 gi|147920524|ref|YP_685681.1| - 0.011 15.7 0.1 0.014 15.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) Semialdhyde_dh PF01118.19 gi|147920524|ref|YP_685681.1| - 0.03 14.6 1.1 0.33 11.2 0.2 2.0 1 1 1 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain GreA_GreB PF01272.14 gi|147920524|ref|YP_685681.1| - 0.077 12.7 0.1 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Transcription elongation factor, GreA/GreB, C-term DUF1471 PF07338.8 gi|147920524|ref|YP_685681.1| - 0.29 10.8 0.1 0.29 10.8 0.0 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1471) Zn_Tnp_IS1595 PF12760.2 gi|147920525|ref|YP_685680.1| - 0.0029 17.3 1.2 0.07 12.9 0.1 2.1 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-CCHC PF00098.18 gi|147920525|ref|YP_685680.1| - 0.0045 16.8 4.5 0.17 11.8 0.4 2.4 2 0 0 2 2 2 2 Zinc knuckle zf-ribbon_3 PF13248.1 gi|147920525|ref|YP_685680.1| - 0.0059 15.7 0.6 1.1 8.5 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|147920525|ref|YP_685680.1| - 0.0079 15.9 0.3 0.011 15.5 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|147920525|ref|YP_685680.1| - 0.0097 15.3 2.0 1.3 8.5 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|147920525|ref|YP_685680.1| - 0.019 14.8 1.2 1 9.3 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|147920525|ref|YP_685680.1| - 0.027 14.1 1.9 0.071 12.8 1.3 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Elf1 PF05129.8 gi|147920525|ref|YP_685680.1| - 0.036 13.7 0.1 0.045 13.4 0.1 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like B2 PF11473.3 gi|147920525|ref|YP_685680.1| - 0.051 13.1 0.0 0.067 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA binding protein B2 Sgf11 PF08209.6 gi|147920525|ref|YP_685680.1| - 0.096 12.0 1.1 3.1 7.1 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.1 gi|147920525|ref|YP_685680.1| - 0.12 12.6 0.5 0.24 11.7 0.4 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2HC5 PF06221.8 gi|147920525|ref|YP_685680.1| - 1.8 8.3 4.9 55 3.6 3.2 2.1 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Cytochrome_C7 PF14522.1 gi|147920526|ref|YP_685679.1| - 0.016 14.8 7.0 0.045 13.3 0.3 2.2 1 1 0 1 1 1 0 Cytochrome c7 NMD3 PF04981.8 gi|147920526|ref|YP_685679.1| - 0.021 13.9 9.7 0.44 9.6 1.5 2.1 2 0 0 2 2 2 0 NMD3 family Fer4 PF00037.22 gi|147920526|ref|YP_685679.1| - 0.027 14.0 1.7 0.027 14.0 1.2 2.9 4 0 0 4 4 3 0 4Fe-4S binding domain Elf1 PF05129.8 gi|147920526|ref|YP_685679.1| - 0.03 13.9 5.9 0.1 12.3 0.4 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like RNHCP PF12647.2 gi|147920526|ref|YP_685679.1| - 0.039 13.7 4.3 0.28 11.0 0.3 2.2 2 0 0 2 2 2 0 RNHCP domain zf-CHY PF05495.7 gi|147920526|ref|YP_685679.1| - 0.068 13.3 6.5 0.89 9.7 0.5 2.2 2 0 0 2 2 2 0 CHY zinc finger zf-MYND PF01753.13 gi|147920526|ref|YP_685679.1| - 0.13 12.1 3.7 2.7 7.9 0.0 2.6 2 1 0 2 2 2 0 MYND finger Fer4_2 PF12797.2 gi|147920526|ref|YP_685679.1| - 0.21 11.5 0.4 0.21 11.5 0.3 3.3 4 0 0 4 4 3 0 4Fe-4S binding domain OrfB_Zn_ribbon PF07282.6 gi|147920526|ref|YP_685679.1| - 0.61 9.7 7.9 3.8 7.2 0.2 2.5 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Cytochrom_c3_2 PF14537.1 gi|147920526|ref|YP_685679.1| - 0.9 9.9 7.5 3.4 8.0 5.2 2.0 1 1 0 1 1 1 0 Cytochrome c3 zf-UBR PF02207.15 gi|147920526|ref|YP_685679.1| - 1.4 8.6 9.5 0.19 11.4 0.3 2.4 2 1 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Zn-ribbon_8 PF09723.5 gi|147920526|ref|YP_685679.1| - 1.6 8.7 11.9 0.99 9.4 1.9 3.0 2 1 1 3 3 3 0 Zinc ribbon domain Cytochrome_C554 PF13435.1 gi|147920526|ref|YP_685679.1| - 1.7 8.7 5.7 3.7 7.5 4.0 1.7 1 1 0 1 1 1 0 Cytochrome c554 and c-prime Fer4_17 PF13534.1 gi|147920526|ref|YP_685679.1| - 2.5 8.5 9.3 1 9.7 3.7 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920526|ref|YP_685679.1| - 4 7.7 11.9 14 6.0 6.3 2.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain zinc_ribbon_2 PF13240.1 gi|147920526|ref|YP_685679.1| - 4.3 6.9 11.0 4.6 6.8 1.6 3.5 3 1 0 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|147920526|ref|YP_685679.1| - 7.7 6.2 11.1 26 4.5 4.6 2.7 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2102 PF09875.4 gi|147920527|ref|YP_685678.1| - 5.3e-12 45.1 0.0 5.9e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) DUF1119 PF06550.6 gi|147920528|ref|YP_685677.1| - 4.3e-88 295.1 28.6 4.8e-88 294.9 19.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) NOG1 PF06858.9 gi|147920529|ref|YP_685676.1| - 7.7e-21 73.7 0.0 1.5e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|147920529|ref|YP_685676.1| - 1e-17 64.1 0.0 2.2e-17 63.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|147920529|ref|YP_685676.1| - 1.9e-10 40.2 0.0 2.9e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|147920529|ref|YP_685676.1| - 7.1e-05 23.2 0.0 0.00018 21.9 0.0 1.7 2 0 0 2 2 2 1 Miro-like protein EIF_2_alpha PF07541.7 gi|147920529|ref|YP_685676.1| - 0.0072 16.0 0.2 0.054 13.2 0.1 2.3 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit Ras PF00071.17 gi|147920529|ref|YP_685676.1| - 0.017 14.5 0.1 0.11 11.8 0.0 2.4 2 2 1 3 3 3 0 Ras family Arf PF00025.16 gi|147920529|ref|YP_685676.1| - 0.025 13.8 0.1 0.13 11.5 0.0 2.0 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.11 gi|147920529|ref|YP_685676.1| - 0.042 12.9 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 AIG1 family DUF1846 PF08903.6 gi|147920529|ref|YP_685676.1| - 0.061 11.7 0.0 0.11 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) DUF4415 PF14384.1 gi|147920531|ref|YP_685674.1| - 0.012 15.7 1.1 0.04 14.0 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4415) GreA_GreB_N PF03449.10 gi|147920531|ref|YP_685674.1| - 0.02 14.9 0.2 0.085 12.9 0.0 2.1 1 1 1 2 2 2 0 Transcription elongation factor, N-terminal Sipho_Gp157 PF05565.6 gi|147920531|ref|YP_685674.1| - 0.022 14.3 0.1 1.9 8.0 0.0 2.2 1 1 1 2 2 2 0 Siphovirus Gp157 AT_hook PF02178.14 gi|147920531|ref|YP_685674.1| - 0.16 11.7 6.6 0.39 10.5 4.5 1.7 1 0 0 1 1 1 0 AT hook motif Peptidase_S24 PF00717.18 gi|147920532|ref|YP_685673.1| - 0.00012 21.6 0.0 0.0013 18.3 0.0 2.3 2 1 0 2 2 2 1 Peptidase S24-like FMN_red PF03358.10 gi|147920533|ref|YP_685672.1| - 1.3e-29 102.6 0.0 1.6e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147920533|ref|YP_685672.1| - 7.3e-12 45.2 0.0 1e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold MH2 PF03166.9 gi|147920533|ref|YP_685672.1| - 0.052 13.3 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 MH2 domain BssS PF13991.1 gi|147920534|ref|YP_685671.1| - 0.13 11.9 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 BssS protein family GAF_3 PF13492.1 gi|147920535|ref|YP_685670.1| - 2e-11 44.0 0.0 3.4e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|147920535|ref|YP_685670.1| - 6.1e-11 42.6 0.0 1.5e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147920535|ref|YP_685670.1| - 3.7e-10 39.5 0.0 1.6e-09 37.5 0.0 2.0 1 1 0 1 1 1 1 PAS fold GAF PF01590.21 gi|147920535|ref|YP_685670.1| - 1.5e-08 34.9 0.0 3.4e-08 33.7 0.0 1.7 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|147920535|ref|YP_685670.1| - 2e-08 34.2 0.4 7.9e-07 29.0 0.0 2.7 2 1 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|147920535|ref|YP_685670.1| - 3.3e-08 34.1 0.0 5.4e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|147920535|ref|YP_685670.1| - 4.3e-08 32.7 0.0 1.4e-06 27.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|147920535|ref|YP_685670.1| - 0.022 15.0 0.0 9.9 6.4 0.0 3.1 3 0 0 3 3 3 0 PAS domain PIG-L PF02585.12 gi|147920536|ref|YP_685669.1| - 1.2e-16 61.3 0.2 1.1e-15 58.2 0.1 2.3 2 1 0 2 2 2 1 GlcNAc-PI de-N-acetylase Glyco_trans_4_2 PF13477.1 gi|147920536|ref|YP_685669.1| - 0.001 18.9 0.0 0.0017 18.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Oxidored_nitro PF00148.14 gi|147920536|ref|YP_685669.1| - 0.018 13.6 0.0 0.073 11.6 0.0 1.8 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase DUF1615 PF07759.7 gi|147920536|ref|YP_685669.1| - 0.076 11.7 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1615) DUF2225 PF09986.4 gi|147920537|ref|YP_685667.1| - 4.8e-21 75.2 0.0 6.6e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) TPR_8 PF13181.1 gi|147920537|ref|YP_685667.1| - 9e-07 28.2 0.2 3.9e-06 26.2 0.0 2.1 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147920537|ref|YP_685667.1| - 2.5e-06 27.3 0.2 1.5e-05 24.8 0.1 2.0 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147920537|ref|YP_685667.1| - 9.2e-06 25.1 1.1 6.7e-05 22.4 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147920537|ref|YP_685667.1| - 1.6e-05 24.2 0.2 8.3e-05 22.0 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147920537|ref|YP_685667.1| - 0.00013 22.2 0.2 0.0019 18.6 0.0 2.5 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147920537|ref|YP_685667.1| - 0.00083 18.9 1.1 0.0095 15.6 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147920537|ref|YP_685667.1| - 0.0014 18.2 0.0 0.0034 17.0 0.0 1.7 1 0 0 1 1 1 1 TPR repeat Sel1 PF08238.7 gi|147920537|ref|YP_685667.1| - 0.0035 17.9 1.2 0.052 14.2 0.1 2.8 2 1 0 2 2 2 1 Sel1 repeat TPR_16 PF13432.1 gi|147920537|ref|YP_685667.1| - 0.0051 17.4 0.7 0.02 15.5 0.1 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147920537|ref|YP_685667.1| - 0.0072 16.7 0.3 0.092 13.2 0.0 2.7 2 1 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|147920537|ref|YP_685667.1| - 0.036 14.4 0.0 0.19 12.2 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147920537|ref|YP_685667.1| - 0.1 12.9 0.1 0.18 12.1 0.1 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat MIT PF04212.13 gi|147920537|ref|YP_685667.1| - 0.18 11.7 0.5 1.5 8.7 0.4 2.2 1 1 0 1 1 1 0 MIT (microtubule interacting and transport) domain zf-C2H2_6 PF13912.1 gi|147920537|ref|YP_685667.1| - 0.49 10.3 4.6 0.89 9.5 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|147920537|ref|YP_685667.1| - 0.5 10.7 5.5 0.81 10.0 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain HTH_AsnC-type PF13404.1 gi|147920538|ref|YP_685666.1| - 6.9e-16 57.5 0.6 4.2e-09 35.8 0.0 2.4 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|147920538|ref|YP_685666.1| - 4.9e-14 51.4 0.0 4.8e-08 32.2 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|147920538|ref|YP_685666.1| - 0.0071 15.9 0.1 0.34 10.5 0.0 2.9 3 0 0 3 3 3 1 HTH domain HTH_23 PF13384.1 gi|147920538|ref|YP_685666.1| - 0.022 14.3 0.0 0.97 9.1 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.14 gi|147920538|ref|YP_685666.1| - 0.044 13.4 0.0 2.9 7.6 0.0 3.1 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_6 PF01418.12 gi|147920538|ref|YP_685666.1| - 0.052 13.2 0.0 13 5.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_20 PF12840.2 gi|147920538|ref|YP_685666.1| - 0.057 13.2 0.0 8.6 6.2 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain Nuc_deoxyrib_tr PF05014.10 gi|147920539|ref|YP_685665.1| - 1.8e-23 82.5 0.0 2.1e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase FmdE PF02663.9 gi|147920540|ref|YP_685664.1| - 9.4e-20 70.8 0.0 1.1e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon ABC_tran PF00005.22 gi|147920541|ref|YP_685663.1| - 9e-27 94.0 0.0 1.4e-26 93.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920541|ref|YP_685663.1| - 3.4e-11 43.6 0.0 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|147920541|ref|YP_685663.1| - 5e-06 26.9 0.0 7.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|147920541|ref|YP_685663.1| - 9.1e-05 22.3 0.1 0.0037 17.1 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|147920541|ref|YP_685663.1| - 0.00012 21.4 0.2 0.046 12.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.10 gi|147920541|ref|YP_685663.1| - 0.00023 20.8 0.4 0.011 15.4 0.1 2.1 2 0 0 2 2 2 1 NTPase AAA_15 PF13175.1 gi|147920541|ref|YP_685663.1| - 0.0018 17.4 0.0 0.34 9.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|147920541|ref|YP_685663.1| - 0.002 17.6 0.3 0.18 11.2 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|147920541|ref|YP_685663.1| - 0.0042 17.0 0.6 0.035 14.0 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|147920541|ref|YP_685663.1| - 0.0043 16.5 0.1 0.0082 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|147920541|ref|YP_685663.1| - 0.0043 16.1 0.1 0.0071 15.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|147920541|ref|YP_685663.1| - 0.01 15.4 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|147920541|ref|YP_685663.1| - 0.011 15.1 0.0 0.022 14.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.17 gi|147920541|ref|YP_685663.1| - 0.023 14.1 0.1 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AFG1_ATPase PF03969.11 gi|147920541|ref|YP_685663.1| - 0.024 13.4 0.1 0.18 10.6 0.0 1.9 2 0 0 2 2 2 0 AFG1-like ATPase NACHT PF05729.7 gi|147920541|ref|YP_685663.1| - 0.028 14.0 0.1 0.064 12.9 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|147920541|ref|YP_685663.1| - 0.03 14.2 0.0 0.095 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|147920541|ref|YP_685663.1| - 0.032 14.3 0.1 0.39 10.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|147920541|ref|YP_685663.1| - 0.032 14.5 0.0 0.5 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|147920541|ref|YP_685663.1| - 0.033 13.6 0.1 0.06 12.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|147920541|ref|YP_685663.1| - 0.034 14.9 0.0 0.19 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|147920541|ref|YP_685663.1| - 0.081 11.4 0.2 0.89 8.0 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|147920541|ref|YP_685663.1| - 0.082 13.1 0.0 1.2 9.3 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.16 gi|147920541|ref|YP_685663.1| - 0.087 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 MutS domain V ArgK PF03308.11 gi|147920541|ref|YP_685663.1| - 0.089 11.5 0.2 0.15 10.8 0.1 1.3 1 0 0 1 1 1 0 ArgK protein DUF258 PF03193.11 gi|147920541|ref|YP_685663.1| - 0.095 11.8 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|147920541|ref|YP_685663.1| - 0.11 12.3 0.1 0.21 11.3 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|147920541|ref|YP_685663.1| - 0.11 11.3 0.1 0.41 9.4 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|147920541|ref|YP_685663.1| - 0.13 12.2 0.1 0.33 10.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|147920541|ref|YP_685663.1| - 0.15 11.6 0.1 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|147920541|ref|YP_685663.1| - 0.16 11.3 0.0 0.7 9.2 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein UPF0079 PF02367.12 gi|147920541|ref|YP_685663.1| - 0.16 11.5 0.1 0.37 10.4 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|147920541|ref|YP_685663.1| - 0.18 10.2 0.1 0.79 8.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|147920541|ref|YP_685663.1| - 0.19 10.5 0.0 0.28 9.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC-3 PF00950.12 gi|147920542|ref|YP_685662.1| - 7.1e-44 150.0 38.1 8.6e-44 149.7 26.4 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|147920542|ref|YP_685662.1| - 0.0064 15.3 35.1 0.014 14.2 24.3 1.6 1 1 0 1 1 1 1 FecCD transport family TroA PF01297.12 gi|147920543|ref|YP_685661.1| - 9.4e-10 38.1 0.2 1.8e-09 37.2 0.1 1.4 1 1 0 1 1 1 1 Periplasmic solute binding protein family Vg_Tdu PF07545.9 gi|147920543|ref|YP_685661.1| - 0.093 12.1 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Vestigial/Tondu family MgtE_N PF03448.12 gi|147920544|ref|YP_685660.1| - 4.6e-23 81.4 3.0 5.8e-23 81.1 0.9 2.0 2 0 0 2 2 2 1 MgtE intracellular N domain MgtE PF01769.11 gi|147920544|ref|YP_685660.1| - 4.2e-22 78.8 12.1 4.2e-22 78.8 8.4 2.0 2 0 0 2 2 2 1 Divalent cation transporter CBS PF00571.23 gi|147920544|ref|YP_685660.1| - 1.7e-12 46.9 0.5 1.3e-06 28.1 0.3 2.8 2 0 0 2 2 2 2 CBS domain DUF3022 PF11226.3 gi|147920544|ref|YP_685660.1| - 0.058 13.2 0.2 0.47 10.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3022) DUF2628 PF10947.3 gi|147920544|ref|YP_685660.1| - 5.4 6.8 19.3 0.15 11.8 2.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2628) CbiA PF01656.18 gi|147920545|ref|YP_685659.1| - 5.5e-22 78.1 0.1 7.5e-22 77.6 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|147920545|ref|YP_685659.1| - 1.2e-09 38.2 0.1 8e-08 32.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain Fer4_NifH PF00142.13 gi|147920545|ref|YP_685659.1| - 8.3e-08 31.7 0.9 1.1e-06 28.0 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|147920545|ref|YP_685659.1| - 5.8e-06 25.9 0.1 1.2e-05 24.9 0.1 1.5 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|147920545|ref|YP_685659.1| - 1.7e-05 24.7 0.1 3.2e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 ArsA_ATPase PF02374.10 gi|147920545|ref|YP_685659.1| - 3.2e-05 23.1 0.2 3.2e-05 23.1 0.1 1.8 2 1 0 2 2 2 1 Anion-transporting ATPase MobB PF03205.9 gi|147920545|ref|YP_685659.1| - 3.6e-05 23.4 0.0 9.1e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|147920545|ref|YP_685659.1| - 3.7e-05 24.5 0.5 8.3e-05 23.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|147920545|ref|YP_685659.1| - 8.1e-05 21.5 1.3 0.00073 18.4 0.1 2.2 2 0 0 2 2 2 1 ArgK protein SRP54 PF00448.17 gi|147920545|ref|YP_685659.1| - 8.7e-05 22.0 1.3 0.0046 16.4 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MipZ PF09140.6 gi|147920545|ref|YP_685659.1| - 0.00012 21.2 0.5 0.00041 19.5 0.0 1.9 2 0 0 2 2 2 1 ATPase MipZ TrwB_AAD_bind PF10412.4 gi|147920545|ref|YP_685659.1| - 0.00031 19.5 0.4 0.0043 15.7 0.1 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain YhjQ PF06564.7 gi|147920545|ref|YP_685659.1| - 0.00059 19.2 0.0 0.0041 16.5 0.0 1.9 2 0 0 2 2 2 1 YhjQ protein ATP_bind_1 PF03029.12 gi|147920545|ref|YP_685659.1| - 0.00069 19.2 0.1 0.0018 17.8 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|147920545|ref|YP_685659.1| - 0.0007 19.0 0.3 0.0019 17.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|147920545|ref|YP_685659.1| - 0.001 18.7 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase KTI12 PF08433.5 gi|147920545|ref|YP_685659.1| - 0.0013 17.9 0.0 0.0029 16.8 0.0 1.6 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.1 gi|147920545|ref|YP_685659.1| - 0.0021 18.3 0.1 0.0044 17.3 0.1 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|147920545|ref|YP_685659.1| - 0.0031 16.6 0.1 0.0062 15.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|147920545|ref|YP_685659.1| - 0.0044 17.0 0.1 0.017 15.0 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain ABC_tran PF00005.22 gi|147920545|ref|YP_685659.1| - 0.0071 16.6 0.1 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|147920545|ref|YP_685659.1| - 0.01 15.2 0.1 0.026 13.9 0.1 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family TrkA_N PF02254.13 gi|147920545|ref|YP_685659.1| - 0.031 14.2 0.3 0.49 10.4 0.0 2.3 2 1 0 2 2 2 0 TrkA-N domain Miro PF08477.8 gi|147920545|ref|YP_685659.1| - 0.036 14.5 0.0 0.087 13.3 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein PRK PF00485.13 gi|147920545|ref|YP_685659.1| - 0.067 12.7 0.1 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Thymidylate_kin PF02223.12 gi|147920545|ref|YP_685659.1| - 0.075 12.4 0.0 0.18 11.1 0.0 1.6 2 0 0 2 2 1 0 Thymidylate kinase IstB_IS21 PF01695.12 gi|147920545|ref|YP_685659.1| - 0.077 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein KaiC PF06745.8 gi|147920545|ref|YP_685659.1| - 0.084 11.9 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 KaiC KAP_NTPase PF07693.9 gi|147920545|ref|YP_685659.1| - 0.093 11.7 0.0 0.16 10.8 0.0 1.5 1 0 0 1 1 1 0 KAP family P-loop domain Mur_ligase_M PF08245.7 gi|147920545|ref|YP_685659.1| - 0.1 12.6 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 2 0 Mur ligase middle domain DUF917 PF06032.7 gi|147920545|ref|YP_685659.1| - 0.1 11.1 0.3 0.37 9.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF917) AAA_26 PF13500.1 gi|147920545|ref|YP_685659.1| - 0.12 11.9 0.9 3 7.3 0.2 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|147920545|ref|YP_685659.1| - 0.13 12.4 0.0 0.34 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase GTP_EFTU PF00009.22 gi|147920545|ref|YP_685659.1| - 0.17 11.3 1.1 1.2 8.4 0.8 2.1 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|147920545|ref|YP_685659.1| - 0.46 10.0 2.1 0.33 10.5 0.2 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain Desulfoferrodox PF01880.13 gi|147920546|ref|YP_685658.1| - 3.3e-06 27.2 0.0 4.6e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|147920546|ref|YP_685658.1| - 0.0044 17.0 0.0 0.0074 16.3 0.0 1.3 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY PhrC_PhrF PF11131.3 gi|147920546|ref|YP_685658.1| - 0.01 15.3 0.0 0.017 14.6 0.0 1.4 1 0 0 1 1 1 0 Rap-phr extracellular signalling A2M_N_2 PF07703.9 gi|147920546|ref|YP_685658.1| - 0.065 13.0 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin family N-terminal region Iso_dh PF00180.15 gi|147920549|ref|YP_685655.1| - 1.1e-92 310.6 0.0 1.4e-92 310.3 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|147920550|ref|YP_685654.1| - 8.6e-23 80.8 0.0 3.5e-22 78.9 0.0 2.0 1 1 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|147920550|ref|YP_685654.1| - 2e-06 27.3 0.1 4.5e-05 22.9 0.1 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus DUF3006 PF11213.3 gi|147920550|ref|YP_685654.1| - 0.0039 16.9 0.0 0.043 13.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3006) Aconitase PF00330.15 gi|147920551|ref|YP_685653.1| - 6.5e-86 288.6 1.1 2e-59 201.2 0.1 2.0 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) TetR_N PF00440.18 gi|147920552|ref|YP_685652.1| - 1.2e-18 66.4 1.1 2.8e-18 65.2 0.2 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|147920552|ref|YP_685652.1| - 0.003 18.1 0.1 0.0071 16.8 0.1 1.7 1 0 0 1 1 1 1 WHG domain CinA PF02464.12 gi|147920552|ref|YP_685652.1| - 0.062 12.7 0.1 0.09 12.2 0.1 1.2 1 0 0 1 1 1 0 Competence-damaged protein Acetyltransf_1 PF00583.19 gi|147920557|ref|YP_685646.1| - 5.8e-18 64.7 0.0 1.2e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147920557|ref|YP_685646.1| - 6.2e-11 42.2 0.0 8.2e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147920557|ref|YP_685646.1| - 1.8e-09 37.7 0.0 2.1e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147920557|ref|YP_685646.1| - 7.7e-07 29.1 0.0 1.4e-06 28.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147920557|ref|YP_685646.1| - 4e-06 26.4 0.0 7e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|147920557|ref|YP_685646.1| - 5.4e-06 26.4 0.0 6.9e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147920557|ref|YP_685646.1| - 1e-05 25.7 0.0 1.3e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147920557|ref|YP_685646.1| - 3.8e-05 23.6 0.0 4.9e-05 23.3 0.0 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147920557|ref|YP_685646.1| - 0.00027 20.7 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|147920557|ref|YP_685646.1| - 0.00086 19.1 0.0 0.0012 18.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Abhydrolase_6 PF12697.2 gi|147920559|ref|YP_685644.1| - 2.2e-30 106.2 0.0 2.7e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|147920559|ref|YP_685644.1| - 1.9e-15 57.0 0.0 1e-07 31.7 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|147920559|ref|YP_685644.1| - 3.4e-15 56.0 0.0 5.4e-15 55.4 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|147920559|ref|YP_685644.1| - 2.1e-08 32.9 0.0 6.2e-07 28.1 0.0 2.0 1 1 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|147920559|ref|YP_685644.1| - 0.00034 20.3 0.0 0.00095 18.9 0.0 1.7 1 1 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|147920559|ref|YP_685644.1| - 0.04 13.1 0.0 0.68 9.1 0.0 2.4 3 0 0 3 3 3 0 Prolyl oligopeptidase family DUF835 PF05763.7 gi|147920560|ref|YP_685643.1| - 2.2e-26 92.0 0.0 6.8e-26 90.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF835) PAS_9 PF13426.1 gi|147920560|ref|YP_685643.1| - 1.6e-24 86.2 0.0 9.6e-11 41.9 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS PF00989.19 gi|147920560|ref|YP_685643.1| - 1.3e-19 70.0 0.0 2.7e-09 36.8 0.0 3.0 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|147920560|ref|YP_685643.1| - 9.3e-19 67.4 0.1 9.7e-18 64.2 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.5 gi|147920560|ref|YP_685643.1| - 2.5e-18 66.1 0.0 7.5e-11 42.0 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|147920560|ref|YP_685643.1| - 1.1e-10 40.9 0.0 0.00065 19.4 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|147920560|ref|YP_685643.1| - 1.9e-06 27.9 0.3 0.00015 21.8 0.1 3.0 3 1 0 3 3 3 1 GAF domain PAS_10 PF13596.1 gi|147920560|ref|YP_685643.1| - 0.0003 20.9 0.0 0.75 10.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|147920560|ref|YP_685643.1| - 0.00071 20.0 0.4 0.003 18.0 0.2 2.2 2 1 0 2 2 1 1 GAF domain PAS_7 PF12860.2 gi|147920560|ref|YP_685643.1| - 0.0057 16.6 0.0 1.1 9.2 0.0 3.6 2 2 0 2 2 2 1 PAS fold GAF PF01590.21 gi|147920560|ref|YP_685643.1| - 0.017 15.2 0.5 0.18 11.9 0.3 2.3 1 1 0 1 1 1 0 GAF domain HisKA_2 PF07568.7 gi|147920561|ref|YP_685642.1| - 6.8e-30 102.7 1.3 1.4e-29 101.7 0.9 1.6 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|147920561|ref|YP_685642.1| - 4.4e-10 39.2 0.0 1.1e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|147920561|ref|YP_685642.1| - 8.6e-08 31.9 0.0 1.8e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|147920561|ref|YP_685642.1| - 1.3e-07 31.8 0.0 9.9e-07 29.0 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|147920561|ref|YP_685642.1| - 1.3e-06 28.4 0.0 3.8e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|147920561|ref|YP_685642.1| - 4.9e-06 26.3 0.1 1.3e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HWE_HK PF07536.9 gi|147920561|ref|YP_685642.1| - 5.1e-06 26.8 0.4 5.1e-06 26.8 0.3 1.9 2 0 0 2 2 2 1 HWE histidine kinase PAS_8 PF13188.1 gi|147920561|ref|YP_685642.1| - 9.2e-05 22.1 0.0 0.00025 20.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain DivIVA PF05103.8 gi|147920561|ref|YP_685642.1| - 0.098 12.7 4.0 0.14 12.2 2.8 1.2 1 0 0 1 1 1 0 DivIVA protein Rad51 PF08423.6 gi|147920562|ref|YP_685641.1| - 1.6e-89 299.2 0.0 2e-89 298.9 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.1 gi|147920562|ref|YP_685641.1| - 2.1e-14 53.4 2.2 3.9e-13 49.3 1.7 2.5 3 0 0 3 3 2 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|147920562|ref|YP_685641.1| - 4.5e-13 49.0 0.0 7e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|147920562|ref|YP_685641.1| - 4.2e-10 39.1 0.1 1.1e-08 34.4 0.1 2.1 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|147920562|ref|YP_685641.1| - 2.6e-07 29.9 0.0 3.5e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 KaiC HHH PF00633.18 gi|147920562|ref|YP_685641.1| - 3.8e-07 29.4 2.7 0.0033 17.0 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|147920562|ref|YP_685641.1| - 1.6e-06 27.8 0.1 5.3e-06 26.2 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|147920562|ref|YP_685641.1| - 0.00017 21.4 0.0 0.00042 20.1 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|147920562|ref|YP_685641.1| - 0.00023 21.0 0.0 0.0009 19.1 0.0 2.1 2 0 0 2 2 1 1 IMS family HHH motif CobU PF02283.11 gi|147920562|ref|YP_685641.1| - 0.0045 16.4 0.0 0.081 12.3 0.0 2.2 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_22 PF13401.1 gi|147920562|ref|YP_685641.1| - 0.0054 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|147920562|ref|YP_685641.1| - 0.0065 16.6 0.1 0.023 14.9 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol_lambd_f PF10391.4 gi|147920562|ref|YP_685641.1| - 0.0067 15.9 0.0 0.027 14.0 0.0 2.1 2 0 0 2 2 1 1 Fingers domain of DNA polymerase lambda ATP-synt_ab PF00006.20 gi|147920562|ref|YP_685641.1| - 0.0074 15.8 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|147920562|ref|YP_685641.1| - 0.051 13.8 0.1 0.29 11.4 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|147920562|ref|YP_685641.1| - 0.056 13.0 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF1009 PF06230.6 gi|147920562|ref|YP_685641.1| - 0.061 12.6 0.1 0.26 10.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1009) DUF4332 PF14229.1 gi|147920562|ref|YP_685641.1| - 0.081 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH_8 PF14716.1 gi|147920562|ref|YP_685641.1| - 0.099 12.8 0.2 1.4 9.1 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain HD PF01966.17 gi|147920563|ref|YP_685640.1| - 3e-15 56.3 0.4 5.5e-15 55.4 0.3 1.5 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|147920563|ref|YP_685640.1| - 0.001 18.3 0.0 0.01 15.1 0.0 2.1 1 1 1 2 2 2 1 HDOD domain PRD PF00874.15 gi|147920564|ref|YP_685639.1| - 0.0018 18.3 1.6 0.016 15.3 0.2 2.3 2 0 0 2 2 2 1 PRD domain TFIIE_alpha PF02002.12 gi|147920564|ref|YP_685639.1| - 0.065 12.7 1.9 0.12 11.8 1.3 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2683 PF10884.3 gi|147920564|ref|YP_685639.1| - 0.07 13.0 0.5 0.21 11.5 0.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2683) DUF4065 PF13274.1 gi|147920564|ref|YP_685639.1| - 0.24 12.1 4.8 0.61 10.8 3.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) Methylase_S PF01420.14 gi|147920565|ref|YP_685638.1| - 8.6e-08 32.3 0.0 1.5e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 Type I restriction modification DNA specificity domain N6_Mtase PF02384.11 gi|147920566|ref|YP_685637.1| - 4.1e-110 367.7 0.0 5.7e-110 367.2 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.3 gi|147920566|ref|YP_685637.1| - 8.3e-36 123.4 2.0 2.2e-35 122.0 1.4 1.7 1 0 0 1 1 1 1 HsdM N-terminal domain UPF0020 PF01170.13 gi|147920566|ref|YP_685637.1| - 7e-09 35.5 0.0 1.3e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|147920566|ref|YP_685637.1| - 2.5e-08 33.9 0.0 4.8e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|147920566|ref|YP_685637.1| - 0.00026 21.3 0.0 0.00067 19.9 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase MTS PF05175.9 gi|147920566|ref|YP_685637.1| - 0.12 11.7 0.0 0.34 10.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase small domain Methylase_S PF01420.14 gi|147920567|ref|YP_685636.1| - 4.7e-22 78.7 0.2 1.8e-10 41.0 0.0 2.3 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain HSDR_N PF04313.9 gi|147920568|ref|YP_685635.1| - 3.6e-32 111.6 0.1 8.7e-32 110.4 0.0 1.6 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF3387 PF11867.3 gi|147920568|ref|YP_685635.1| - 2.3e-27 95.8 1.2 5.1e-27 94.7 0.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) ResIII PF04851.10 gi|147920568|ref|YP_685635.1| - 4.4e-17 62.4 0.0 1.2e-16 61.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|147920568|ref|YP_685635.1| - 0.00024 20.6 0.1 0.002 17.6 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|147920568|ref|YP_685635.1| - 0.0044 17.1 0.0 0.54 10.3 0.0 3.6 3 0 0 3 3 3 1 AAA domain Helicase_C PF00271.26 gi|147920568|ref|YP_685635.1| - 0.012 15.4 0.0 0.031 14.1 0.0 1.7 1 0 0 1 1 1 0 Helicase conserved C-terminal domain DUF45 PF01863.12 gi|147920569|ref|YP_685634.1| - 7.7e-55 185.8 1.1 8.9e-55 185.6 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|147920569|ref|YP_685634.1| - 5.2e-06 26.4 0.1 8.6e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 WLM domain SprT-like PF10263.4 gi|147920569|ref|YP_685634.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 SprT-like family Peptidase_M10 PF00413.19 gi|147920569|ref|YP_685634.1| - 0.078 12.7 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Matrixin Peptidase_M48 PF01435.13 gi|147920569|ref|YP_685634.1| - 0.14 11.6 0.0 0.29 10.6 0.0 1.5 1 1 0 1 1 1 0 Peptidase family M48 CarboxypepD_reg PF13620.1 gi|147920570|ref|YP_685633.1| - 6e-12 45.4 0.8 1.5e-11 44.1 0.5 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|147920570|ref|YP_685633.1| - 1.4e-06 27.9 0.8 1.4e-06 27.9 0.6 1.7 2 0 0 2 2 2 1 Cna protein B-type domain phage_tail_N PF08400.5 gi|147920570|ref|YP_685633.1| - 0.001 18.7 1.1 0.002 17.8 0.5 1.8 1 1 0 1 1 1 1 Prophage tail fibre N-terminal Big_1 PF02369.11 gi|147920570|ref|YP_685633.1| - 0.0013 18.5 1.9 0.0069 16.2 0.3 2.3 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) PEGA PF08308.6 gi|147920570|ref|YP_685633.1| - 0.0042 16.8 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 PEGA domain Y_Y_Y PF07495.8 gi|147920570|ref|YP_685633.1| - 0.0078 15.9 1.0 0.012 15.3 0.1 1.7 2 0 0 2 2 2 1 Y_Y_Y domain DUF4397 PF14344.1 gi|147920570|ref|YP_685633.1| - 1.3 9.3 5.8 3.6 7.9 2.8 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4397) DUF45 PF01863.12 gi|147920571|ref|YP_685632.1| - 2.5e-55 187.4 0.0 2.9e-55 187.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF45 WLM PF08325.5 gi|147920571|ref|YP_685632.1| - 0.00018 21.4 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 WLM domain GCOM2 PF15328.1 gi|147920572|ref|YP_685631.1| - 0.038 13.7 0.2 0.043 13.5 0.2 1.0 1 0 0 1 1 1 0 Putative GRINL1B complex locus protein 2 DUF3584 PF12128.3 gi|147920572|ref|YP_685631.1| - 0.054 10.8 1.2 0.059 10.6 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) KR PF08659.5 gi|147920572|ref|YP_685631.1| - 0.15 11.6 0.3 0.21 11.2 0.2 1.1 1 0 0 1 1 1 0 KR domain Bud13 PF09736.4 gi|147920572|ref|YP_685631.1| - 0.2 11.8 1.8 0.25 11.6 1.2 1.1 1 0 0 1 1 1 0 Pre-mRNA-splicing factor of RES complex Atg14 PF10186.4 gi|147920572|ref|YP_685631.1| - 0.39 9.6 2.4 0.44 9.4 1.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Gly-zipper_OmpA PF13436.1 gi|147920573|ref|YP_685630.1| - 0.0038 16.8 2.0 0.6 9.7 0.1 2.1 1 1 1 2 2 2 2 Glycine-zipper containing OmpA-like membrane domain Romo1 PF10247.4 gi|147920573|ref|YP_685630.1| - 0.017 15.2 3.9 2.8 8.1 1.3 2.2 2 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF1097 PF06496.6 gi|147920573|ref|YP_685630.1| - 0.021 14.6 1.6 0.027 14.2 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1097) DUF3816 PF12822.2 gi|147920573|ref|YP_685630.1| - 0.042 13.7 4.8 0.066 13.0 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Voltage_CLC PF00654.15 gi|147920573|ref|YP_685630.1| - 0.062 12.3 6.8 0.098 11.6 1.1 2.0 1 1 1 2 2 2 0 Voltage gated chloride channel DUF2955 PF11168.3 gi|147920573|ref|YP_685630.1| - 0.22 11.1 4.3 0.3 10.7 3.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2955) DUF1049 PF06305.6 gi|147920573|ref|YP_685630.1| - 0.4 10.2 6.7 1.2 8.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF3767 PF12597.3 gi|147920573|ref|YP_685630.1| - 0.64 9.6 1.9 0.69 9.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3767) Bacteriocin_IIc PF10439.4 gi|147920573|ref|YP_685630.1| - 0.68 10.1 8.3 1.8 8.7 0.2 2.1 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide Phage_holin_2 PF04550.7 gi|147920573|ref|YP_685630.1| - 0.88 9.7 7.5 0.18 11.9 1.8 1.9 1 1 1 2 2 2 0 Phage holin family 2 DUF3169 PF11368.3 gi|147920573|ref|YP_685630.1| - 1.7 7.7 6.6 0.52 9.4 2.9 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3169) Gly-zipper_Omp PF13488.1 gi|147920573|ref|YP_685630.1| - 3.9 7.1 13.1 57 3.4 9.1 2.3 1 1 0 1 1 1 0 Glycine zipper FtsX PF02687.16 gi|147920573|ref|YP_685630.1| - 5.2 6.8 15.0 22 4.8 9.5 2.0 1 1 1 2 2 2 0 FtsX-like permease family Gly-zipper_YMGG PF13441.1 gi|147920573|ref|YP_685630.1| - 7.5 6.1 12.6 2.8e+02 1.1 8.7 2.5 1 1 0 1 1 1 0 YMGG-like Gly-zipper MCR_D PF02505.9 gi|147920574|ref|YP_685629.1| - 2.9e-36 124.3 0.1 3.3e-36 124.1 0.1 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D DUF258 PF03193.11 gi|147920575|ref|YP_685628.1| - 1.1e-47 161.2 0.0 1.6e-47 160.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|147920575|ref|YP_685628.1| - 2.8e-09 37.3 0.0 5e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.18 gi|147920575|ref|YP_685628.1| - 9.3e-07 28.8 0.0 2.6e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|147920575|ref|YP_685628.1| - 4.1e-05 24.0 0.0 0.0058 17.1 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein AAA_29 PF13555.1 gi|147920575|ref|YP_685628.1| - 0.0002 20.8 0.0 0.00054 19.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|147920575|ref|YP_685628.1| - 0.00029 20.3 0.1 0.19 11.2 0.0 2.6 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|147920575|ref|YP_685628.1| - 0.00042 20.3 0.2 0.00096 19.1 0.0 1.6 2 0 0 2 2 1 1 AAA ATPase domain Dynamin_N PF00350.18 gi|147920575|ref|YP_685628.1| - 0.0021 17.8 2.0 0.035 13.9 0.8 3.0 2 1 0 2 2 2 1 Dynamin family AAA_28 PF13521.1 gi|147920575|ref|YP_685628.1| - 0.0036 17.2 0.2 0.011 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain FeoB_N PF02421.13 gi|147920575|ref|YP_685628.1| - 0.0045 16.2 0.1 0.031 13.5 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|147920575|ref|YP_685628.1| - 0.0068 17.2 0.1 0.02 15.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain Septin PF00735.13 gi|147920575|ref|YP_685628.1| - 0.0073 15.3 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 Septin IstB_IS21 PF01695.12 gi|147920575|ref|YP_685628.1| - 0.015 14.7 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein GTP_EFTU PF00009.22 gi|147920575|ref|YP_685628.1| - 0.021 14.2 0.5 5.9 6.2 0.1 2.3 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|147920575|ref|YP_685628.1| - 0.042 14.1 0.0 0.1 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|147920575|ref|YP_685628.1| - 0.043 12.9 0.0 0.083 11.9 0.0 1.4 1 0 0 1 1 1 0 AIG1 family AAA_10 PF12846.2 gi|147920575|ref|YP_685628.1| - 0.051 13.0 0.0 0.078 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|147920575|ref|YP_685628.1| - 0.097 12.5 1.0 0.51 10.2 0.1 2.8 4 1 0 4 4 4 0 AAA domain DUF87 PF01935.12 gi|147920575|ref|YP_685628.1| - 0.13 12.0 0.1 0.24 11.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 cobW PF02492.14 gi|147920575|ref|YP_685628.1| - 0.29 10.5 1.7 11 5.3 0.3 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain HxlR PF01638.12 gi|147920576|ref|YP_685627.1| - 5.7e-33 112.4 0.3 6.9e-33 112.1 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|147920576|ref|YP_685627.1| - 0.0019 17.8 0.1 0.0029 17.3 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.2 gi|147920576|ref|YP_685627.1| - 0.0034 17.1 0.0 0.0056 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|147920576|ref|YP_685627.1| - 0.007 16.1 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|147920576|ref|YP_685627.1| - 0.0076 15.9 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|147920576|ref|YP_685627.1| - 0.042 14.1 0.0 0.067 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|147920576|ref|YP_685627.1| - 0.05 13.2 0.0 0.17 11.5 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|147920576|ref|YP_685627.1| - 0.094 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Tautomerase PF01361.16 gi|147920577|ref|YP_685626.1| - 8e-11 41.3 0.0 8.5e-11 41.3 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|147920577|ref|YP_685626.1| - 0.00038 20.4 0.0 0.0004 20.3 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme NatB_MDM20 PF09797.4 gi|147920579|ref|YP_685624.1| - 0.0062 15.3 0.0 0.0062 15.3 0.0 1.1 1 0 0 1 1 1 1 N-acetyltransferase B complex (NatB) non catalytic subunit FMN_red PF03358.10 gi|147920580|ref|YP_685623.1| - 5.4e-29 100.6 0.0 7e-29 100.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147920580|ref|YP_685623.1| - 0.0014 18.1 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_4 PF12800.2 gi|147920580|ref|YP_685623.1| - 0.16 12.4 1.2 0.41 11.0 0.8 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain Flavoprotein PF02441.14 gi|147920581|ref|YP_685622.1| - 2.4e-20 72.5 0.0 3.2e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein Hydrolase_3 PF08282.7 gi|147920582|ref|YP_685621.1| - 1.2e-32 113.4 0.6 1.1e-22 80.8 0.1 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|147920582|ref|YP_685621.1| - 2e-09 38.2 3.0 7.5e-06 26.5 0.1 3.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147920582|ref|YP_685621.1| - 1.1e-08 35.5 0.7 7.3e-07 29.5 0.0 2.6 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|147920582|ref|YP_685621.1| - 3.4e-06 26.5 0.2 0.00019 20.8 0.0 2.3 3 0 0 3 3 3 2 Sucrose-6F-phosphate phosphohydrolase CarboxypepD_reg PF13620.1 gi|147920583|ref|YP_685620.1| - 7e-06 26.0 1.1 3.2e-05 23.8 0.8 2.0 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|147920583|ref|YP_685620.1| - 0.0011 18.8 0.4 0.0019 18.0 0.2 1.6 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF4480 PF13715.1 gi|147920583|ref|YP_685620.1| - 0.02 14.9 0.2 0.061 13.3 0.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4480) VirB8 PF04335.8 gi|147920583|ref|YP_685620.1| - 0.043 13.3 0.3 0.063 12.8 0.2 1.2 1 0 0 1 1 1 0 VirB8 protein DUF1628 PF07790.6 gi|147920583|ref|YP_685620.1| - 0.18 12.5 1.7 0.54 11.0 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) GHMP_kinases_C PF08544.8 gi|147920584|ref|YP_685619.1| - 0.12 12.6 0.5 4.3 7.5 0.0 2.8 2 0 0 2 2 2 0 GHMP kinases C terminal T2SE PF00437.15 gi|147920585|ref|YP_685618.1| - 3.4e-34 118.0 0.0 4.9e-34 117.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|147920585|ref|YP_685618.1| - 0.0012 18.8 0.0 0.0034 17.4 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|147920585|ref|YP_685618.1| - 0.0033 16.9 0.3 0.012 15.1 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|147920585|ref|YP_685618.1| - 0.0042 16.5 0.0 0.011 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|147920585|ref|YP_685618.1| - 0.022 14.2 0.2 0.048 13.1 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|147920585|ref|YP_685618.1| - 0.05 13.2 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain DUF815 PF05673.8 gi|147920585|ref|YP_685618.1| - 0.062 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) cobW PF02492.14 gi|147920585|ref|YP_685618.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|147920585|ref|YP_685618.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|147920585|ref|YP_685618.1| - 0.14 12.4 0.1 0.23 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|147920585|ref|YP_685618.1| - 0.2 10.2 0.0 0.32 9.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KaiC PF06745.8 gi|147920585|ref|YP_685618.1| - 0.23 10.5 0.0 0.4 9.7 0.0 1.2 1 0 0 1 1 1 0 KaiC Pox_A32 PF04665.7 gi|147920585|ref|YP_685618.1| - 0.33 10.2 0.0 0.53 9.5 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein DJ-1_PfpI PF01965.19 gi|147920586|ref|YP_685617.1| - 5.6e-32 110.2 0.0 6.7e-32 109.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|147920586|ref|YP_685617.1| - 6.6e-15 54.7 0.0 7.6e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|147920586|ref|YP_685617.1| - 0.017 14.6 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|147920586|ref|YP_685617.1| - 0.1 11.4 0.0 0.21 10.4 0.0 1.7 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Pribosyltran PF00156.22 gi|147920587|ref|YP_685616.1| - 6.9e-31 106.5 0.1 1.2e-30 105.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|147920587|ref|YP_685616.1| - 2.4e-05 23.6 0.0 3.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|147920587|ref|YP_685616.1| - 0.0027 17.0 0.0 0.0079 15.5 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase Zeta_toxin PF06414.7 gi|147920587|ref|YP_685616.1| - 0.055 12.5 0.0 0.083 11.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|147920588|ref|YP_685615.1| - 8.5e-16 58.2 0.0 3.4e-12 46.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|147920588|ref|YP_685615.1| - 1.2e-12 48.1 0.0 1e-11 45.0 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|147920588|ref|YP_685615.1| - 1.2e-07 31.3 0.0 0.0074 15.7 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|147920588|ref|YP_685615.1| - 0.00079 17.8 0.0 0.0049 15.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|147920588|ref|YP_685615.1| - 0.0011 18.5 0.0 0.0072 15.8 0.0 2.2 2 1 1 3 3 3 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|147920588|ref|YP_685615.1| - 0.0038 17.3 0.0 1.1 9.3 0.0 3.2 2 1 1 3 3 3 1 AAA domain NrfD PF03916.9 gi|147920589|ref|YP_685614.1| - 0.0008 18.9 2.3 0.001 18.5 1.2 1.6 1 1 0 1 1 1 1 Polysulphide reductase, NrfD EI24 PF07264.6 gi|147920589|ref|YP_685614.1| - 0.021 14.2 3.2 0.025 13.9 2.2 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Peptidase_A24 PF01478.13 gi|147920589|ref|YP_685614.1| - 1.9 8.6 13.1 0.18 11.9 6.2 1.4 2 0 0 2 2 2 0 Type IV leader peptidase family Gln-synt_C PF00120.19 gi|147920591|ref|YP_685612.1| - 8.1e-97 323.4 0.0 9.9e-97 323.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|147920591|ref|YP_685612.1| - 1.5e-30 104.5 0.0 2.9e-30 103.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ATG16 PF08614.6 gi|147920592|ref|YP_685611.1| - 0.0011 18.7 0.4 0.0011 18.7 0.3 1.7 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) DUF869 PF05911.6 gi|147920592|ref|YP_685611.1| - 0.013 13.7 1.8 0.02 13.1 1.3 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Reo_sigmaC PF04582.7 gi|147920592|ref|YP_685611.1| - 0.02 14.0 0.0 0.027 13.6 0.0 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Cortex-I_coil PF09304.5 gi|147920592|ref|YP_685611.1| - 0.049 13.6 1.3 0.11 12.6 0.9 1.6 1 0 0 1 1 1 0 Cortexillin I, coiled coil DUF641 PF04859.7 gi|147920592|ref|YP_685611.1| - 0.05 13.3 2.0 0.68 9.7 1.1 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DivIC PF04977.10 gi|147920592|ref|YP_685611.1| - 0.052 13.0 4.7 0.97 8.9 0.9 2.4 1 1 1 2 2 2 0 Septum formation initiator GvpH PF05455.6 gi|147920592|ref|YP_685611.1| - 0.058 13.0 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 GvpH Fez1 PF06818.10 gi|147920592|ref|YP_685611.1| - 0.086 12.8 2.8 0.87 9.5 2.0 2.3 1 1 0 1 1 1 0 Fez1 TBPIP PF07106.8 gi|147920592|ref|YP_685611.1| - 0.19 11.2 2.5 0.41 10.1 1.7 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Lzipper-MIP1 PF14389.1 gi|147920592|ref|YP_685611.1| - 0.34 11.0 0.1 0.34 11.0 0.1 2.7 3 0 0 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 ROS_MUCR PF05443.6 gi|147920592|ref|YP_685611.1| - 0.64 9.8 7.3 42 3.9 1.4 3.6 2 1 1 3 3 3 0 ROS/MUCR transcriptional regulator protein FlxA PF14282.1 gi|147920592|ref|YP_685611.1| - 9.3 6.2 9.1 0.21 11.5 0.5 2.2 2 0 0 2 2 2 0 FlxA-like protein tRNA-synt_2c PF01411.14 gi|147920593|ref|YP_685610.1| - 2.8e-76 256.9 0.0 3.9e-76 256.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|147920593|ref|YP_685610.1| - 1.2e-10 41.0 0.2 3.2e-10 39.7 0.2 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Alpha_adaptin_C PF02296.11 gi|147920593|ref|YP_685610.1| - 0.0068 16.3 0.0 0.16 11.9 0.0 2.5 2 0 0 2 2 2 1 Alpha adaptin AP2, C-terminal domain DUF1495 PF07381.6 gi|147920594|ref|YP_685609.1| - 1.4e-25 88.7 0.1 1.8e-25 88.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF2806 PF10987.3 gi|147920594|ref|YP_685609.1| - 0.063 12.7 0.0 0.85 9.0 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2806) ETRAMP PF09716.5 gi|147920595|ref|YP_685608.1| - 0.023 14.6 0.6 0.038 13.9 0.4 1.3 1 0 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) DUF4407 PF14362.1 gi|147920595|ref|YP_685608.1| - 0.14 11.0 0.0 0.19 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ABC2_membrane_2 PF12679.2 gi|147920596|ref|YP_685607.1| - 4e-15 55.4 27.9 6.1e-15 54.8 19.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920596|ref|YP_685607.1| - 8.2e-11 41.5 47.2 1.4e-10 40.7 32.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920597|ref|YP_685606.1| - 5.8e-13 48.3 20.0 7.8e-13 47.9 13.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920597|ref|YP_685606.1| - 3.1e-09 36.3 34.3 3.7e-09 36.1 23.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.1 gi|147920598|ref|YP_685605.1| - 0.00028 20.8 4.1 0.35 10.9 0.2 3.7 2 2 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF2012 PF09430.5 gi|147920598|ref|YP_685605.1| - 0.0032 17.2 0.1 0.13 12.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) Cna_B PF05738.8 gi|147920598|ref|YP_685605.1| - 0.0092 15.7 11.2 0.091 12.5 0.7 3.6 2 2 0 2 2 2 2 Cna protein B-type domain DUF1919 PF08942.5 gi|147920598|ref|YP_685605.1| - 0.024 13.9 0.0 0.069 12.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1919) CytB6-F_Fe-S PF08802.5 gi|147920599|ref|YP_685604.1| - 0.029 14.3 1.2 0.14 12.2 0.0 2.8 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Sarcolipin PF05366.6 gi|147920599|ref|YP_685604.1| - 0.092 12.1 0.3 0.2 11.1 0.2 1.6 1 0 0 1 1 1 0 Sarcolipin Ceramidase PF05875.7 gi|147920599|ref|YP_685604.1| - 0.14 11.2 2.1 0.15 11.1 0.7 1.5 2 0 0 2 2 2 0 Ceramidase DUF3561 PF12084.3 gi|147920599|ref|YP_685604.1| - 0.26 11.1 4.9 0.14 12.0 1.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3561) BofA PF07441.6 gi|147920599|ref|YP_685604.1| - 0.39 10.7 12.6 5.3 7.0 5.2 2.7 2 1 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA SK_channel PF03530.9 gi|147920599|ref|YP_685604.1| - 1.2 9.0 6.4 0.28 11.0 1.6 1.9 1 1 1 2 2 2 0 Calcium-activated SK potassium channel PgaD PF13994.1 gi|147920599|ref|YP_685604.1| - 1.7 8.1 5.7 0.97 8.9 1.5 2.1 2 1 0 2 2 2 0 PgaD-like protein Claudin_2 PF13903.1 gi|147920599|ref|YP_685604.1| - 2.8 7.6 14.5 4.7 6.8 0.2 2.8 1 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Robl_LC7 PF03259.12 gi|147920600|ref|YP_685603.1| - 1e-11 44.2 0.4 1.5e-11 43.7 0.3 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain GTP_EFTU_D2 PF03144.20 gi|147920601|ref|YP_685602.1| - 3.8e-11 42.9 1.0 6.9e-08 32.4 0.1 2.6 2 0 0 2 2 2 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|147920601|ref|YP_685602.1| - 9.3e-09 34.8 1.3 4.1e-07 29.5 0.2 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|147920601|ref|YP_685602.1| - 0.00062 19.2 0.2 0.051 13.0 0.0 2.2 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AAA_14 PF13173.1 gi|147920601|ref|YP_685602.1| - 0.0074 16.1 0.0 0.067 13.0 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_28 PF13521.1 gi|147920601|ref|YP_685602.1| - 0.02 14.8 0.1 0.037 13.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|147920601|ref|YP_685602.1| - 0.027 14.7 0.1 0.5 10.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|147920601|ref|YP_685602.1| - 0.066 14.0 0.3 0.38 11.5 0.2 2.1 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|147920601|ref|YP_685602.1| - 0.097 12.1 0.3 0.29 10.6 0.2 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation RNase_HII PF01351.13 gi|147920602|ref|YP_685601.1| - 5.7e-48 163.1 0.0 6.6e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Homez PF11569.3 gi|147920602|ref|YP_685601.1| - 0.016 14.2 0.0 0.034 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain leucine-zipper encoding, Homez HhH-GPD PF00730.20 gi|147920603|ref|YP_685600.1| - 2e-12 47.3 0.0 2.9e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|147920603|ref|YP_685600.1| - 0.0002 20.8 0.1 0.00083 18.9 0.0 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|147920603|ref|YP_685600.1| - 0.022 14.9 0.7 0.045 13.9 0.5 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III PDDEXK_3 PF13366.1 gi|147920604|ref|YP_685598.1| - 4.2e-40 136.4 0.8 4.7e-40 136.3 0.5 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|147920604|ref|YP_685598.1| - 0.0088 15.8 0.2 0.013 15.2 0.1 1.2 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Cas_Cas4 PF01930.12 gi|147920604|ref|YP_685598.1| - 0.061 13.2 0.0 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF83 Tox-REase-7 PF15649.1 gi|147920604|ref|YP_685598.1| - 0.1 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 7 HAD_2 PF13419.1 gi|147920605|ref|YP_685597.1| - 2e-27 96.5 0.0 2.7e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|147920605|ref|YP_685597.1| - 7e-13 48.0 0.0 1.3e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|147920605|ref|YP_685597.1| - 1.1e-10 42.2 0.0 4e-10 40.4 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase A1_Propeptide PF07966.7 gi|147920605|ref|YP_685597.1| - 0.00031 20.4 0.2 0.35 10.7 0.1 2.6 2 0 0 2 2 2 2 A1 Propeptide Hydrolase_6 PF13344.1 gi|147920605|ref|YP_685597.1| - 0.0011 18.8 0.0 0.0032 17.3 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147920605|ref|YP_685597.1| - 0.042 14.0 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|147920606|ref|YP_685596.1| - 1.1e-19 71.3 0.0 1.4e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|147920606|ref|YP_685596.1| - 8e-08 31.8 0.2 2.7e-06 27.0 0.0 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|147920606|ref|YP_685596.1| - 1.2e-05 25.8 0.0 1.6e-05 25.4 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|147920606|ref|YP_685596.1| - 4e-05 23.4 0.0 0.00097 18.9 0.0 2.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase DUF1778 PF08681.6 gi|147920606|ref|YP_685596.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) Rubella_Capsid PF05750.6 gi|147920607|ref|YP_685595.1| - 0.16 11.3 2.3 0.21 10.9 1.6 1.1 1 0 0 1 1 1 0 Rubella capsid protein Neisseria_TspB PF05616.8 gi|147920607|ref|YP_685595.1| - 1.4 7.1 4.7 2.1 6.6 3.2 1.2 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Methyltransf_11 PF08241.7 gi|147920608|ref|YP_684923.1| - 3.9e-22 78.5 0.1 5.5e-22 78.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920608|ref|YP_684923.1| - 8.4e-17 61.3 0.0 1.2e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920608|ref|YP_684923.1| - 8.7e-14 51.7 0.0 1.7e-13 50.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920608|ref|YP_684923.1| - 2.9e-12 46.9 0.0 6e-12 45.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920608|ref|YP_684923.1| - 5.4e-11 43.0 0.3 1.8e-10 41.3 0.2 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920608|ref|YP_684923.1| - 3.5e-10 39.6 0.0 6.8e-10 38.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147920608|ref|YP_684923.1| - 1e-07 31.9 0.3 2.9e-07 30.5 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920608|ref|YP_684923.1| - 5.4e-07 28.9 0.0 1.7e-06 27.3 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|147920608|ref|YP_684923.1| - 2.2e-06 27.2 0.0 3.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.10 gi|147920608|ref|YP_684923.1| - 2.4e-06 27.3 0.0 3.4e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.15 gi|147920608|ref|YP_684923.1| - 8e-06 25.1 0.0 1.4e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.9 gi|147920608|ref|YP_684923.1| - 0.0014 17.8 0.0 0.0029 16.8 0.0 1.5 1 1 0 1 1 1 1 Tellurite resistance protein TehB N6_N4_Mtase PF01555.13 gi|147920608|ref|YP_684923.1| - 0.0057 16.1 0.0 0.099 12.1 0.0 2.0 2 0 0 2 2 2 1 DNA methylase CheR PF01739.13 gi|147920608|ref|YP_684923.1| - 0.008 15.4 0.1 0.021 14.0 0.0 1.7 2 1 0 2 2 2 1 CheR methyltransferase, SAM binding domain NodS PF05401.6 gi|147920608|ref|YP_684923.1| - 0.0092 15.3 0.0 0.019 14.3 0.0 1.5 1 1 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|147920608|ref|YP_684923.1| - 0.016 13.8 0.2 0.034 12.8 0.0 1.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|147920608|ref|YP_684923.1| - 0.021 13.1 0.1 0.24 9.7 0.1 1.9 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|147920608|ref|YP_684923.1| - 0.033 13.5 0.1 0.084 12.2 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.14 gi|147920608|ref|YP_684923.1| - 0.071 12.6 0.1 0.12 11.9 0.1 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AdoMet_MTase PF07757.8 gi|147920608|ref|YP_684923.1| - 0.078 13.1 0.1 0.2 11.8 0.0 1.7 2 0 0 2 2 1 0 Predicted AdoMet-dependent methyltransferase Aldolase_II PF00596.16 gi|147920609|ref|YP_685593.1| - 2.8e-32 111.8 0.0 3.1e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain zf-ribbon_3 PF13248.1 gi|147920610|ref|YP_685591.1| - 4.2e-09 35.3 1.6 6.4e-09 34.7 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147920610|ref|YP_685591.1| - 8.2e-08 31.5 3.0 1.2e-07 30.9 2.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|147920610|ref|YP_685591.1| - 2.1e-06 27.4 0.6 2.7e-06 27.0 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|147920610|ref|YP_685591.1| - 0.0049 16.5 3.8 0.0084 15.7 2.6 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|147920610|ref|YP_685591.1| - 0.021 14.5 5.1 1.7 8.5 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF3273 PF11677.3 gi|147920610|ref|YP_685591.1| - 0.047 12.9 0.6 0.058 12.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3273) Ribosomal_L32p PF01783.18 gi|147920610|ref|YP_685591.1| - 0.067 13.3 0.2 0.11 12.7 0.2 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|147920610|ref|YP_685591.1| - 0.11 12.5 2.1 2.5 8.1 0.1 2.5 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.14 gi|147920610|ref|YP_685591.1| - 0.12 12.1 0.2 0.18 11.5 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-dskA_traR PF01258.12 gi|147920610|ref|YP_685591.1| - 0.3 10.8 3.1 1.2 8.9 2.1 2.0 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-NADH-PPase PF09297.6 gi|147920610|ref|YP_685591.1| - 0.75 9.3 9.7 0.54 9.8 2.8 2.8 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|147920610|ref|YP_685591.1| - 1.1 8.5 4.2 0.82 9.0 0.4 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RNA_POL_M_15KD PF02150.11 gi|147920610|ref|YP_685591.1| - 1.6 8.5 3.8 6.4 6.5 0.7 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2842 PF11003.3 gi|147920610|ref|YP_685591.1| - 2.3 8.1 7.4 2.1 8.2 3.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2842) Nudix_N_2 PF14803.1 gi|147920610|ref|YP_685591.1| - 2.3 7.9 5.6 5.1 6.8 0.6 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-DHHC PF01529.15 gi|147920610|ref|YP_685591.1| - 6.1 6.1 5.4 2.7 7.3 0.3 2.2 2 1 0 2 2 2 0 DHHC palmitoyltransferase Glucos_trans_II PF14264.1 gi|147920611|ref|YP_685590.1| - 0.025 13.5 4.2 0.032 13.2 2.9 1.1 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF4131 PF13567.1 gi|147920611|ref|YP_685590.1| - 1.2 8.5 4.5 1.5 8.2 2.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HEM4 PF02602.10 gi|147920612|ref|YP_685589.1| - 1.1e-53 181.8 0.0 1.4e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD MGS PF02142.17 gi|147920612|ref|YP_685589.1| - 0.013 15.4 0.0 8.5 6.3 0.0 2.7 3 0 0 3 3 3 0 MGS-like domain TP_methylase PF00590.15 gi|147920613|ref|YP_685588.1| - 1.1e-53 182.0 0.3 1.3e-53 181.8 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Imm43 PF15602.1 gi|147920613|ref|YP_685588.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 43 Porphobil_deam PF01379.15 gi|147920614|ref|YP_685587.1| - 2.7e-70 235.6 0.3 3.5e-70 235.2 0.2 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|147920614|ref|YP_685587.1| - 4.1e-11 42.8 0.1 8.1e-11 41.8 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain LysR_substrate PF03466.15 gi|147920614|ref|YP_685587.1| - 0.038 13.0 0.5 0.45 9.5 0.0 2.3 2 1 0 2 2 2 0 LysR substrate binding domain SBP_bac_3 PF00497.15 gi|147920614|ref|YP_685587.1| - 0.079 12.1 0.0 1.5 8.0 0.0 2.3 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 Aminotran_3 PF00202.16 gi|147920615|ref|YP_685586.1| - 1e-67 228.4 0.0 1.4e-67 228.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|147920615|ref|YP_685586.1| - 0.008 15.1 0.0 0.024 13.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|147920615|ref|YP_685586.1| - 0.12 11.4 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase ALAD PF00490.16 gi|147920616|ref|YP_685585.1| - 4.3e-145 482.6 0.4 4.8e-145 482.4 0.3 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Shikimate_DH PF01488.15 gi|147920617|ref|YP_685584.1| - 3.9e-36 124.1 0.1 6.2e-36 123.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.10 gi|147920617|ref|YP_685584.1| - 4.6e-36 123.6 0.0 1.2e-35 122.3 0.0 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|147920617|ref|YP_685584.1| - 2.1e-22 78.9 2.0 2.1e-22 78.9 1.4 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|147920617|ref|YP_685584.1| - 1.5e-06 28.5 0.1 3.9e-06 27.1 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|147920617|ref|YP_685584.1| - 1.6e-05 25.0 0.0 3.5e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|147920617|ref|YP_685584.1| - 4.8e-05 22.5 0.2 0.00013 21.1 0.1 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|147920617|ref|YP_685584.1| - 0.00042 19.4 1.0 0.0049 15.9 0.2 2.7 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.10 gi|147920617|ref|YP_685584.1| - 0.00067 19.5 0.1 0.0012 18.7 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|147920617|ref|YP_685584.1| - 0.0012 18.9 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|147920617|ref|YP_685584.1| - 0.002 18.0 0.3 0.0093 15.8 0.2 2.1 1 1 1 2 2 2 1 short chain dehydrogenase AdoHcyase_NAD PF00670.16 gi|147920617|ref|YP_685584.1| - 0.012 15.4 0.1 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Saccharop_dh PF03435.13 gi|147920617|ref|YP_685584.1| - 0.016 14.2 0.1 0.026 13.5 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase CPSase_L_chain PF00289.17 gi|147920617|ref|YP_685584.1| - 0.018 15.1 0.2 0.043 13.9 0.1 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|147920617|ref|YP_685584.1| - 0.019 14.9 0.2 0.048 13.6 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|147920617|ref|YP_685584.1| - 0.027 14.1 0.1 0.062 12.9 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|147920617|ref|YP_685584.1| - 0.078 12.4 0.1 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Coat_F PF07875.7 gi|147920617|ref|YP_685584.1| - 0.13 12.4 0.1 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Coat F domain PDDEXK_3 PF13366.1 gi|147920618|ref|YP_685583.1| - 3.6e-37 127.0 0.1 4.2e-37 126.7 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily NAD_binding_7 PF13241.1 gi|147920619|ref|YP_685582.1| - 5.7e-21 74.7 0.0 1.5e-20 73.3 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|147920619|ref|YP_685582.1| - 0.0025 16.7 0.0 0.0043 16.0 0.0 1.4 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central TrkA_N PF02254.13 gi|147920619|ref|YP_685582.1| - 0.019 14.9 0.2 0.045 13.7 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain OCD_Mu_crystall PF02423.10 gi|147920619|ref|YP_685582.1| - 0.075 11.7 0.3 0.14 10.8 0.2 1.4 1 1 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family DUF4013 PF13197.1 gi|147920620|ref|YP_685581.1| - 1.6e-24 86.1 33.7 3.3e-24 85.1 23.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Peptidase_M20 PF01546.23 gi|147920621|ref|YP_685580.1| - 2.4e-38 131.5 0.0 2.9e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|147920621|ref|YP_685580.1| - 7.5e-19 67.5 0.0 1.5e-18 66.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|147920621|ref|YP_685580.1| - 0.00025 20.8 0.0 0.068 12.8 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M42 PF05343.9 gi|147920621|ref|YP_685580.1| - 0.00052 18.8 0.0 0.0011 17.7 0.0 1.6 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase DUF998 PF06197.8 gi|147920622|ref|YP_685579.1| - 3.1e-11 42.9 21.7 4.4e-11 42.4 15.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF998 PF06197.8 gi|147920623|ref|YP_685578.1| - 4.2e-27 94.6 24.5 4.8e-27 94.4 16.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF1700 PF08006.6 gi|147920623|ref|YP_685578.1| - 0.92 8.7 3.5 1.4 8.1 2.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Acetyltransf_1 PF00583.19 gi|147920624|ref|YP_685577.1| - 2e-10 40.5 0.0 3.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|147920624|ref|YP_685577.1| - 1.5e-09 37.9 0.0 1.9e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|147920624|ref|YP_685577.1| - 6.3e-07 29.4 0.1 9.1e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147920624|ref|YP_685577.1| - 0.0017 18.2 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MoCF_biosynth PF00994.19 gi|147920625|ref|YP_685576.1| - 5.4e-27 93.9 0.0 6.2e-27 93.7 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain RNase_T PF00929.19 gi|147920626|ref|YP_685575.1| - 1.9e-05 25.0 0.0 2.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Exonuclease HEAT_2 PF13646.1 gi|147920627|ref|YP_685574.1| - 1.6e-15 57.1 1.3 2.7e-15 56.4 0.9 1.4 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.11 gi|147920627|ref|YP_685574.1| - 2.8e-12 45.8 1.7 1.4e-06 28.2 0.1 4.2 5 0 0 5 5 5 2 PBS lyase HEAT-like repeat Arm PF00514.18 gi|147920627|ref|YP_685574.1| - 1.9e-05 24.3 0.1 0.00016 21.3 0.0 2.4 1 1 2 3 3 3 1 Armadillo/beta-catenin-like repeat DUF1469 PF07332.6 gi|147920627|ref|YP_685574.1| - 0.0023 17.6 0.4 0.0032 17.1 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) HEAT_EZ PF13513.1 gi|147920627|ref|YP_685574.1| - 0.004 17.5 0.8 0.004 17.5 0.6 2.8 3 1 0 3 3 3 1 HEAT-like repeat HEAT PF02985.17 gi|147920627|ref|YP_685574.1| - 0.019 14.9 0.2 6.7 7.0 0.0 3.5 3 0 0 3 3 3 0 HEAT repeat NfeD PF01957.13 gi|147920627|ref|YP_685574.1| - 0.03 14.4 0.2 0.041 14.0 0.1 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding TrbC PF04956.8 gi|147920627|ref|YP_685574.1| - 0.042 13.8 1.9 0.067 13.2 1.3 1.3 1 0 0 1 1 1 0 TrbC/VIRB2 family PolC_DP2 PF03833.8 gi|147920628|ref|YP_685573.1| - 0 1216.9 0.1 0 1216.9 0.1 1.3 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 TerY-C PF15616.1 gi|147920628|ref|YP_685573.1| - 0.01 15.7 4.5 0.01 15.7 3.1 2.3 2 0 0 2 2 2 0 TerY-C metal binding domain HypA PF01155.14 gi|147920628|ref|YP_685573.1| - 0.34 10.5 8.0 0.49 10.0 0.1 2.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Peptidase_M50 PF02163.17 gi|147920629|ref|YP_685572.1| - 3.8e-17 61.8 4.6 3.8e-17 61.8 3.2 1.9 2 1 0 2 2 2 1 Peptidase family M50 DUF588 PF04535.7 gi|147920629|ref|YP_685572.1| - 0.0012 18.4 0.7 0.0012 18.4 0.5 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF588) UreF PF01730.11 gi|147920629|ref|YP_685572.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 UreF UPF0060 PF02694.10 gi|147920629|ref|YP_685572.1| - 7.8 6.5 9.5 0.33 10.9 1.1 2.4 2 1 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family GTP_EFTU PF00009.22 gi|147920630|ref|YP_685571.1| - 3e-10 39.8 0.0 7.2e-09 35.3 0.0 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Ras PF00071.17 gi|147920630|ref|YP_685571.1| - 4e-07 29.5 0.0 5.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Ras family Miro PF08477.8 gi|147920630|ref|YP_685571.1| - 1.7e-06 28.4 0.0 2.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|147920630|ref|YP_685571.1| - 0.00014 21.4 0.0 0.00086 18.9 0.0 2.1 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|147920630|ref|YP_685571.1| - 0.00038 19.7 0.0 0.0025 17.0 0.0 2.2 1 1 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|147920630|ref|YP_685571.1| - 0.0016 17.9 0.0 0.56 9.6 0.0 2.1 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|147920630|ref|YP_685571.1| - 0.007 15.6 0.0 0.047 12.9 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1 PF01926.18 gi|147920630|ref|YP_685571.1| - 0.009 15.9 0.0 0.021 14.7 0.0 1.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|147920630|ref|YP_685571.1| - 0.035 14.0 0.1 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DNase-RNase PF02577.9 gi|147920632|ref|YP_685569.1| - 4.7e-44 148.9 0.7 5.5e-44 148.6 0.5 1.0 1 0 0 1 1 1 1 Bifunctional nuclease UPF0104 PF03706.8 gi|147920633|ref|YP_685568.1| - 2.6e-40 138.5 40.1 3.4e-40 138.1 27.8 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF577 PF04510.7 gi|147920633|ref|YP_685568.1| - 0.018 14.7 0.1 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF577) Prenyltransf PF01255.14 gi|147920634|ref|YP_685567.1| - 1.7e-35 122.1 0.0 5.7e-33 113.9 0.0 2.1 2 0 0 2 2 2 2 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|147920635|ref|YP_685566.1| - 8.6e-74 247.4 13.8 8.6e-74 247.4 9.6 2.2 3 0 0 3 3 3 1 Integral membrane protein DUF92 OppC_N PF12911.2 gi|147920635|ref|YP_685566.1| - 1.9 7.8 0.0 1.9 7.8 0.0 4.7 5 0 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C NTP_transf_3 PF12804.2 gi|147920636|ref|YP_685565.1| - 1.5e-35 122.6 0.0 1.8e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|147920636|ref|YP_685565.1| - 0.001 18.7 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Glycos_transf_2 PF00535.21 gi|147920636|ref|YP_685565.1| - 0.0014 18.3 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 CofC PF01983.11 gi|147920636|ref|YP_685565.1| - 0.0042 16.0 0.0 0.006 15.5 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like Ni_hydr_CYTB PF01292.15 gi|147920637|ref|YP_685564.1| - 4.9e-12 45.6 9.0 6e-12 45.3 6.2 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|147920637|ref|YP_685564.1| - 3.7e-11 42.7 10.4 6.1e-11 42.0 7.2 1.3 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.1 gi|147920637|ref|YP_685564.1| - 0.00022 21.2 17.8 0.019 15.0 7.6 3.3 2 1 0 2 2 2 2 Domain of unknown function (DUF4405) DUF307 PF03733.8 gi|147920637|ref|YP_685564.1| - 0.13 12.6 0.4 0.13 12.6 0.3 3.0 4 0 0 4 4 4 0 Domain of unknown function (DUF307) NiFeSe_Hases PF00374.14 gi|147920638|ref|YP_685563.1| - 8.7e-69 232.6 0.0 1.3e-45 156.1 0.0 3.0 3 0 0 3 3 3 3 Nickel-dependent hydrogenase Oxidored_q6 PF01058.17 gi|147920639|ref|YP_685562.1| - 8.4e-29 99.8 0.0 1.3e-28 99.1 0.0 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFe_hyd_SSU_C PF14720.1 gi|147920639|ref|YP_685562.1| - 9.7e-26 89.6 3.8 9.7e-26 89.6 2.7 2.1 2 0 0 2 2 2 1 NiFe/NiFeSe hydrogenase small subunit C-terminal TatC PF00902.13 gi|147920640|ref|YP_685561.1| - 8.5e-48 162.5 20.1 1e-47 162.3 13.9 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) WXG100 PF06013.7 gi|147920641|ref|YP_685560.1| - 0.18 11.8 0.6 3 7.9 0.1 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG TPR_2 PF07719.12 gi|147920642|ref|YP_685559.1| - 0.00034 20.3 4.8 0.43 10.6 0.0 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147920642|ref|YP_685559.1| - 0.005 16.5 1.3 1.3 8.9 0.0 2.9 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147920642|ref|YP_685559.1| - 0.017 14.7 4.1 0.083 12.5 0.4 3.2 3 1 2 5 5 5 0 TPR repeat TPR_1 PF00515.23 gi|147920642|ref|YP_685559.1| - 0.034 13.7 3.1 13 5.6 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147920642|ref|YP_685559.1| - 0.057 13.7 0.5 0.54 10.6 0.0 2.7 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147920642|ref|YP_685559.1| - 0.069 13.8 0.3 7 7.5 0.0 3.5 3 2 1 4 4 4 0 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147920642|ref|YP_685559.1| - 0.11 12.7 0.1 34 4.9 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|147920642|ref|YP_685559.1| - 0.12 12.5 5.4 0.039 14.1 1.3 2.1 2 1 1 3 3 3 0 Anaphase-promoting complex, cyclosome, subunit 3 Tautomerase PF01361.16 gi|147920643|ref|YP_685558.1| - 3.1e-13 49.1 0.4 3.5e-13 48.9 0.2 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|147920643|ref|YP_685558.1| - 8e-08 32.2 0.0 8.6e-08 32.0 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|147920643|ref|YP_685558.1| - 9.1e-06 25.7 0.0 9.1e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme DUF1904 PF08921.6 gi|147920643|ref|YP_685558.1| - 0.011 15.7 0.1 0.012 15.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1904) Peptidase_M28 PF04389.12 gi|147920644|ref|YP_685557.1| - 3.3e-16 59.5 0.0 4.9e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF2365 PF10157.4 gi|147920646|ref|YP_685555.1| - 0.098 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) Metallophos PF00149.23 gi|147920646|ref|YP_685555.1| - 0.12 11.7 0.1 4.2 6.7 0.1 2.1 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase DEAD_assoc PF08494.6 gi|147920647|ref|YP_685554.1| - 1.5e-48 165.0 0.2 3e-48 164.0 0.2 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|147920647|ref|YP_685554.1| - 1.4e-29 102.7 0.0 2.7e-29 101.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147920647|ref|YP_685554.1| - 8.5e-15 54.3 0.0 4.7e-13 48.7 0.0 3.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147920647|ref|YP_685554.1| - 2.1e-06 27.7 0.0 5.4e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|147920647|ref|YP_685554.1| - 0.056 13.5 0.9 0.32 11.1 0.0 2.7 3 0 0 3 3 3 0 AAA domain T2SE PF00437.15 gi|147920647|ref|YP_685554.1| - 0.074 11.9 0.0 0.38 9.6 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein Med4 PF10018.4 gi|147920647|ref|YP_685554.1| - 0.17 11.2 1.5 0.35 10.2 1.0 1.4 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 NAD_synthase PF02540.12 gi|147920648|ref|YP_685553.1| - 5.6e-08 31.9 0.0 3e-07 29.6 0.0 2.0 2 0 0 2 2 2 1 NAD synthase Asn_synthase PF00733.16 gi|147920648|ref|YP_685553.1| - 1.9e-05 24.2 0.1 3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|147920648|ref|YP_685553.1| - 2.3e-05 23.9 0.0 4.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|147920648|ref|YP_685553.1| - 0.0002 20.7 0.0 0.00054 19.3 0.0 1.7 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|147920648|ref|YP_685553.1| - 0.00075 18.1 0.1 0.0022 16.5 0.1 1.8 1 1 0 1 1 1 1 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|147920648|ref|YP_685553.1| - 0.0057 15.7 0.1 0.0089 15.1 0.1 1.2 1 0 0 1 1 1 1 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|147920648|ref|YP_685553.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family DUF883 PF05957.8 gi|147920650|ref|YP_685550.1| - 1e-09 38.6 2.3 1.5e-09 38.1 1.0 1.7 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF883) ApoO PF09769.4 gi|147920650|ref|YP_685550.1| - 0.0024 17.6 0.1 0.0029 17.3 0.0 1.1 1 0 0 1 1 1 1 Apolipoprotein O DUF4337 PF14235.1 gi|147920650|ref|YP_685550.1| - 0.0058 16.4 0.2 0.007 16.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4337) DUF3359 PF11839.3 gi|147920650|ref|YP_685550.1| - 0.016 15.4 2.4 0.024 14.9 1.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) YopD PF05844.7 gi|147920650|ref|YP_685550.1| - 0.026 13.5 0.6 0.036 13.1 0.4 1.2 1 0 0 1 1 1 0 YopD protein HSBP1 PF06825.7 gi|147920650|ref|YP_685550.1| - 0.065 12.8 0.2 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DUF848 PF05852.6 gi|147920650|ref|YP_685550.1| - 0.71 9.7 3.4 11 5.8 2.4 2.1 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF137 PF02006.11 gi|147920651|ref|YP_685549.1| - 5.3e-74 247.4 0.1 6.8e-74 247.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 TPP_enzyme_M PF00205.17 gi|147920651|ref|YP_685549.1| - 0.067 12.9 2.0 0.46 10.2 1.4 2.3 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain DUF2884 PF11101.3 gi|147920651|ref|YP_685549.1| - 0.078 12.3 0.1 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Peptidase_MA_2 PF13485.1 gi|147920652|ref|YP_685548.1| - 0.13 12.2 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase MA superfamily tRNA-synt_1 PF00133.17 gi|147920653|ref|YP_685547.1| - 7.2e-62 209.2 0.1 1.7e-59 201.4 0.1 3.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|147920653|ref|YP_685547.1| - 1.1e-21 76.9 1.7 5.8e-10 38.3 0.0 4.1 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|147920653|ref|YP_685547.1| - 3.4e-20 72.3 0.2 7.1e-20 71.3 0.2 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|147920653|ref|YP_685547.1| - 5.7e-09 35.5 0.0 1.5e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|147920653|ref|YP_685547.1| - 1.2e-05 24.5 0.8 0.00017 20.8 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain PQQ_2 PF13360.1 gi|147920656|ref|YP_685543.1| - 5e-17 62.1 1.7 7.1e-06 25.6 0.2 3.7 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|147920656|ref|YP_685543.1| - 1.8e-08 34.3 16.9 0.37 11.1 0.5 7.9 7 3 1 8 8 7 2 PQQ-like domain HTH_5 PF01022.15 gi|147920656|ref|YP_685543.1| - 1.9e-08 33.8 0.1 0.0031 17.1 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family PQQ PF01011.16 gi|147920656|ref|YP_685543.1| - 9.4e-08 31.2 3.8 0.00032 20.0 0.0 5.4 6 0 0 6 6 6 1 PQQ enzyme repeat HTH_24 PF13412.1 gi|147920656|ref|YP_685543.1| - 1.7e-07 30.5 0.2 0.0045 16.3 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920656|ref|YP_685543.1| - 5.8e-06 26.0 0.1 0.02 14.6 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|147920656|ref|YP_685543.1| - 8.4e-05 22.0 0.1 0.016 14.7 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|147920656|ref|YP_685543.1| - 0.00018 21.0 0.0 0.0019 17.8 0.0 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|147920656|ref|YP_685543.1| - 0.00022 20.8 0.3 0.0013 18.4 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|147920656|ref|YP_685543.1| - 0.0013 18.3 0.0 0.0084 15.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|147920656|ref|YP_685543.1| - 0.016 14.8 0.0 0.7 9.6 0.0 2.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.7 gi|147920656|ref|YP_685543.1| - 0.097 12.3 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 HTH domain HTH_3 PF01381.17 gi|147920656|ref|YP_685543.1| - 0.098 12.5 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix DUF4350 PF14258.1 gi|147920656|ref|YP_685543.1| - 0.11 12.7 0.1 0.52 10.5 0.0 2.3 2 0 0 2 2 1 0 Domain of unknown function (DUF4350) KorB PF08535.5 gi|147920656|ref|YP_685543.1| - 0.14 12.2 0.0 1 9.5 0.0 2.1 2 0 0 2 2 2 0 KorB domain Internalin_N PF12354.3 gi|147920657|ref|YP_685542.1| - 0.092 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal Methyltransf_11 PF08241.7 gi|147920658|ref|YP_685541.1| - 2.3e-21 76.0 0.0 4.5e-21 75.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920658|ref|YP_685541.1| - 4.4e-21 75.0 0.0 6.7e-21 74.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920658|ref|YP_685541.1| - 8.1e-20 70.9 0.0 2e-18 66.3 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|147920658|ref|YP_685541.1| - 2.1e-18 66.6 0.0 3.5e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920658|ref|YP_685541.1| - 1.2e-16 60.8 0.0 2.2e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920658|ref|YP_685541.1| - 4.7e-16 59.3 0.0 1.5e-15 57.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920658|ref|YP_685541.1| - 5.1e-15 55.6 0.0 1.1e-14 54.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147920658|ref|YP_685541.1| - 6.3e-13 48.7 0.9 1.2e-11 44.6 0.1 2.3 1 1 1 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|147920658|ref|YP_685541.1| - 9.6e-08 31.8 0.0 1.6e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|147920658|ref|YP_685541.1| - 1.8e-06 27.4 0.0 3.1e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|147920658|ref|YP_685541.1| - 7.2e-05 21.9 0.0 9.5e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|147920658|ref|YP_685541.1| - 0.0012 18.2 0.0 0.0028 17.0 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|147920658|ref|YP_685541.1| - 0.0044 15.7 0.0 0.0059 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Fibrillarin PF01269.12 gi|147920658|ref|YP_685541.1| - 0.009 14.9 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.1 gi|147920658|ref|YP_685541.1| - 0.015 16.1 0.0 0.052 14.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DUF442 PF04273.8 gi|147920658|ref|YP_685541.1| - 0.037 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) PrmA PF06325.8 gi|147920658|ref|YP_685541.1| - 0.044 12.9 0.0 0.074 12.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.12 gi|147920658|ref|YP_685541.1| - 0.076 12.0 0.0 0.33 9.9 0.0 1.9 1 1 0 1 1 1 0 Putative methyltransferase DUF2313 PF10076.4 gi|147920658|ref|YP_685541.1| - 0.11 11.8 0.0 0.35 10.2 0.0 1.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2313) Polysacc_synt PF01943.12 gi|147920660|ref|YP_685539.1| - 1.7e-12 47.2 33.1 1.7e-12 47.2 22.9 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|147920660|ref|YP_685539.1| - 9.7e-11 41.6 33.9 9.7e-11 41.6 23.5 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|147920660|ref|YP_685539.1| - 7.8 6.2 52.5 0.36 10.6 6.9 4.1 4 1 0 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Lipase_GDSL_2 PF13472.1 gi|147920661|ref|YP_685538.1| - 2.4e-09 37.5 0.0 3.5e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|147920661|ref|YP_685538.1| - 4.7e-06 26.6 0.0 2.9e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase HATPase_c PF02518.21 gi|147920662|ref|YP_685537.1| - 1.2e-19 70.0 0.1 2.1e-19 69.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147920662|ref|YP_685537.1| - 3.3e-09 37.0 0.0 9.7e-09 35.5 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|147920662|ref|YP_685537.1| - 5.8e-08 32.7 0.0 1e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|147920662|ref|YP_685537.1| - 2.8e-06 26.9 0.0 1e-05 25.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147920662|ref|YP_685537.1| - 0.00066 19.4 0.0 0.002 17.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold DUF2499 PF10693.4 gi|147920662|ref|YP_685537.1| - 0.64 10.0 4.9 0.17 11.9 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2499) DUF1905 PF08922.6 gi|147920663|ref|YP_685536.1| - 4.8e-23 80.5 0.1 7.7e-23 79.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1905) OmdA PF13376.1 gi|147920663|ref|YP_685536.1| - 8.5e-21 73.3 0.1 7.7e-20 70.3 0.1 2.0 2 0 0 2 2 2 1 Bacteriocin-protection, YdeI or OmpD-Associated Rubrerythrin PF02915.12 gi|147920664|ref|YP_685535.1| - 2.3e-06 27.9 4.1 2.8e-06 27.6 2.9 1.2 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.8 gi|147920664|ref|YP_685535.1| - 0.00099 18.6 0.6 0.0022 17.5 0.1 1.7 1 1 1 2 2 2 1 Ubiquinone biosynthesis protein COQ7 DUF1657 PF07870.6 gi|147920664|ref|YP_685535.1| - 0.039 13.6 0.4 0.99 9.1 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1657) V-ATPase_H_N PF03224.9 gi|147920664|ref|YP_685535.1| - 0.073 12.1 0.1 0.081 12.0 0.1 1.1 1 0 0 1 1 1 0 V-ATPase subunit H Ferritin PF00210.19 gi|147920664|ref|YP_685535.1| - 0.43 10.3 5.3 0.15 11.7 0.9 1.8 1 1 1 2 2 2 0 Ferritin-like domain Acetyltransf_3 PF13302.1 gi|147920665|ref|YP_685534.1| - 3.5e-25 88.8 0.1 4.1e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147920665|ref|YP_685534.1| - 2.6e-18 66.4 0.0 3e-18 66.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|147920665|ref|YP_685534.1| - 5.7e-09 35.8 0.2 9.3e-09 35.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|147920665|ref|YP_685534.1| - 9.8e-07 28.7 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Abi PF02517.11 gi|147920666|ref|YP_685533.1| - 8.9e-12 44.9 8.8 8.9e-12 44.9 6.1 2.6 3 1 0 3 3 3 1 CAAX protease self-immunity ABA_GPCR PF12430.3 gi|147920667|ref|YP_685532.1| - 0.22 10.6 3.0 0.29 10.2 2.1 1.2 1 0 0 1 1 1 0 Abscisic acid G-protein coupled receptor DUF3493 PF11998.3 gi|147920667|ref|YP_685532.1| - 1.6 8.6 5.0 23 4.9 3.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3493) Usp PF00582.21 gi|147920668|ref|YP_685531.1| - 3.4e-30 105.0 0.5 3.8e-30 104.8 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF99 PF01949.11 gi|147920669|ref|YP_685530.1| - 8.7e-66 220.5 0.0 1e-65 220.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 PhosphMutase PF10143.4 gi|147920671|ref|YP_685528.1| - 6.3e-64 214.7 0.0 9.3e-64 214.1 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|147920671|ref|YP_685528.1| - 1.5e-49 168.6 0.0 1.8e-49 168.3 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|147920671|ref|YP_685528.1| - 0.0025 16.5 0.0 0.0042 15.8 0.0 1.3 1 0 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.17 gi|147920671|ref|YP_685528.1| - 0.11 11.7 0.0 0.33 10.2 0.0 1.8 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase Lactamase_B PF00753.22 gi|147920672|ref|YP_685527.1| - 4.5e-21 75.3 0.0 7.6e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|147920672|ref|YP_685527.1| - 1.4e-12 47.7 0.0 2.2e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.2 gi|147920672|ref|YP_685527.1| - 0.00021 20.8 0.0 0.0012 18.4 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Flavodoxin_5 PF12724.2 gi|147920672|ref|YP_685527.1| - 0.0043 17.0 0.0 0.0091 15.9 0.0 1.6 1 0 0 1 1 1 1 Flavodoxin domain Ham1p_like PF01725.11 gi|147920673|ref|YP_685526.1| - 2.1e-47 160.9 0.0 2.4e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DUF4375 PF14300.1 gi|147920673|ref|YP_685526.1| - 0.13 12.2 1.9 0.23 11.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) MS_channel PF00924.13 gi|147920674|ref|YP_685525.1| - 2e-13 50.1 1.8 5.8e-13 48.6 1.2 1.8 1 1 0 1 1 1 1 Mechanosensitive ion channel HupE_UreJ PF04955.7 gi|147920674|ref|YP_685525.1| - 0.086 12.1 0.9 0.13 11.5 0.6 1.1 1 0 0 1 1 1 0 HupE / UreJ protein ATP-grasp_5 PF13549.1 gi|147920675|ref|YP_685524.1| - 9.6e-82 273.4 0.4 7.2e-81 270.6 0.2 2.1 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|147920675|ref|YP_685524.1| - 6.1e-55 184.6 1.8 1.4e-54 183.4 0.2 2.2 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|147920675|ref|YP_685524.1| - 7.2e-28 97.0 0.6 3.4e-27 94.9 0.4 2.3 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|147920675|ref|YP_685524.1| - 6e-18 65.1 2.7 7.8e-18 64.7 0.7 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_4 PF13535.1 gi|147920675|ref|YP_685524.1| - 0.015 14.9 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Peripla_BP_4 PF13407.1 gi|147920675|ref|YP_685524.1| - 0.035 13.4 2.6 3 7.1 0.0 3.5 3 1 0 3 3 3 0 Periplasmic binding protein domain GHL6 PF14871.1 gi|147920675|ref|YP_685524.1| - 0.065 13.2 0.1 36 4.3 0.0 3.3 3 0 0 3 3 3 0 Hypothetical glycosyl hydrolase 6 ATP-grasp_2 PF08442.5 gi|147920675|ref|YP_685524.1| - 0.068 12.5 0.1 0.068 12.5 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain Peripla_BP_2 PF01497.13 gi|147920676|ref|YP_685523.1| - 1.8e-42 145.0 1.3 2.2e-42 144.8 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein CbiZ PF01955.13 gi|147920677|ref|YP_685522.1| - 6.6e-54 182.6 0.1 9.4e-54 182.1 0.0 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase zf-like PF04071.7 gi|147920677|ref|YP_685522.1| - 1.5e-29 101.5 9.1 2.8e-29 100.6 6.3 1.4 1 0 0 1 1 1 1 Cysteine-rich small domain GATase_3 PF07685.9 gi|147920678|ref|YP_685521.1| - 8.7e-35 119.6 0.2 1.3e-34 119.1 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|147920678|ref|YP_685521.1| - 1.8e-25 89.5 0.0 3.3e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|147920678|ref|YP_685521.1| - 2.6e-13 50.0 0.2 2.6e-11 43.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|147920678|ref|YP_685521.1| - 0.011 15.4 0.0 0.068 12.8 0.0 2.3 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B PRK PF00485.13 gi|147920678|ref|YP_685521.1| - 0.012 15.1 1.1 0.8 9.2 0.1 2.4 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF1611 PF07755.6 gi|147920678|ref|YP_685521.1| - 0.012 14.2 0.0 0.033 12.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) Peptidase_S51 PF03575.12 gi|147920678|ref|YP_685521.1| - 0.029 14.0 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Peptidase family S51 AAA_17 PF13207.1 gi|147920678|ref|YP_685521.1| - 0.086 13.6 0.0 0.27 12.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain TetR_N PF00440.18 gi|147920679|ref|YP_685520.1| - 2.7e-18 65.3 0.7 4e-17 61.5 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family MMPL PF03176.10 gi|147920680|ref|YP_685519.1| - 5.2e-101 337.6 26.0 2.3e-54 184.3 4.4 3.3 4 0 0 4 4 4 2 MMPL family ACR_tran PF00873.14 gi|147920680|ref|YP_685519.1| - 2.5e-08 31.8 30.5 5.5e-06 24.1 9.1 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Sterol-sensing PF12349.3 gi|147920680|ref|YP_685519.1| - 0.0003 20.2 22.2 0.059 12.8 6.9 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|147920680|ref|YP_685519.1| - 0.0051 14.7 25.5 0.068 11.0 4.3 2.2 2 0 0 2 2 2 2 Patched family DUF1495 PF07381.6 gi|147920681|ref|YP_685507.1| - 4.7e-32 109.5 0.5 5.2e-32 109.3 0.3 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.1 gi|147920682|ref|YP_685505.1| - 2.6e-14 52.3 0.0 8.4e-07 28.2 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920682|ref|YP_685505.1| - 1.8e-10 40.4 0.0 0.00025 20.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|147920682|ref|YP_685505.1| - 0.00026 20.6 0.0 0.016 14.8 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|147920682|ref|YP_685505.1| - 0.00082 19.0 0.0 0.085 12.5 0.0 2.4 2 0 0 2 2 2 1 MarR family FaeA PF04703.7 gi|147920682|ref|YP_685505.1| - 0.0046 17.0 0.1 4.5 7.5 0.0 2.6 2 0 0 2 2 2 2 FaeA-like protein GerE PF00196.14 gi|147920682|ref|YP_685505.1| - 0.012 14.9 0.0 0.91 8.8 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.1 gi|147920682|ref|YP_685505.1| - 0.031 14.2 0.0 0.081 12.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|147920682|ref|YP_685505.1| - 0.037 13.4 0.0 0.54 9.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|147920682|ref|YP_685505.1| - 0.049 13.2 0.0 0.74 9.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|147920682|ref|YP_685505.1| - 0.061 13.4 0.0 3.6 7.7 0.0 2.7 3 0 0 3 3 3 0 Transcriptional regulator HTH_28 PF13518.1 gi|147920682|ref|YP_685505.1| - 0.08 12.9 0.1 1.1 9.3 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|147920682|ref|YP_685505.1| - 0.086 12.5 0.0 0.44 10.2 0.0 1.9 1 1 1 2 2 2 0 Transposase DUF2407 PF10302.4 gi|147920682|ref|YP_685505.1| - 0.15 12.3 0.4 6.8 6.9 0.0 2.2 1 1 0 2 2 2 0 DUF2407 ubiquitin-like domain PSII_Ycf12 PF05969.6 gi|147920682|ref|YP_685505.1| - 8.1 6.1 6.3 1.9 8.1 1.0 2.4 2 1 0 2 2 2 0 Photosystem II complex subunit Ycf12 HTH_24 PF13412.1 gi|147920683|ref|YP_685516.1| - 3.3e-15 55.1 0.3 1.8e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920683|ref|YP_685516.1| - 7.6e-07 28.8 0.0 0.00019 21.1 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|147920683|ref|YP_685516.1| - 0.0016 17.9 0.0 0.06 12.8 0.0 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147920683|ref|YP_685516.1| - 0.0017 17.7 0.0 2.2 7.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_23 PF13384.1 gi|147920683|ref|YP_685516.1| - 0.0027 17.3 0.1 0.25 11.0 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|147920683|ref|YP_685516.1| - 0.0083 15.6 0.1 1.3 8.6 0.0 2.5 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) MepB PF08877.5 gi|147920683|ref|YP_685516.1| - 0.022 14.2 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 MepB protein HTH_IclR PF09339.5 gi|147920683|ref|YP_685516.1| - 0.024 14.1 0.0 1.9 8.1 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|147920683|ref|YP_685516.1| - 0.03 13.9 0.0 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|147920683|ref|YP_685516.1| - 0.035 13.4 0.0 5.9 6.2 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family RCC1_2 PF13540.1 gi|147920685|ref|YP_685514.1| - 2.7e-27 93.7 30.7 4.1e-08 32.6 0.4 7.6 7 0 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.13 gi|147920685|ref|YP_685514.1| - 5.1e-23 81.0 23.6 8.8e-06 25.8 0.1 8.1 7 1 1 8 8 8 5 Regulator of chromosome condensation (RCC1) repeat SUKH-3 PF14433.1 gi|147920685|ref|YP_685514.1| - 0.77 9.5 4.7 0.8 9.4 0.1 3.1 4 0 0 4 4 4 0 SUKH-3 immunity protein ABC2_membrane_2 PF12679.2 gi|147920686|ref|YP_685513.1| - 2.9e-18 65.7 22.0 4.6e-18 65.0 15.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920686|ref|YP_685513.1| - 1.8e-14 53.4 33.5 4.3e-14 52.2 23.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920686|ref|YP_685513.1| - 1.3e-05 24.6 29.6 1.3e-05 24.6 20.5 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920686|ref|YP_685513.1| - 0.00011 21.3 29.9 0.00011 21.3 20.8 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920687|ref|YP_685512.1| - 7.9e-22 77.4 22.8 1e-21 77.0 15.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920687|ref|YP_685512.1| - 4.6e-07 29.2 43.4 7e-07 28.6 29.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920687|ref|YP_685512.1| - 0.016 14.2 40.6 0.014 14.4 23.2 2.6 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF1495 PF07381.6 gi|147920689|ref|YP_685510.1| - 3.7e-08 32.9 0.1 3.8e-08 32.8 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DDE_Tnp_1 PF01609.16 gi|147920690|ref|YP_685508.1| - 2.4e-19 69.7 0.2 4.6e-19 68.8 0.1 1.5 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|147920690|ref|YP_685508.1| - 7.1e-12 45.0 0.0 1.4e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147920690|ref|YP_685508.1| - 3.3e-08 33.4 0.0 6.6e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147920690|ref|YP_685508.1| - 0.052 13.5 0.3 0.096 12.6 0.2 1.5 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|147920690|ref|YP_685508.1| - 0.068 13.3 0.1 0.15 12.3 0.1 1.6 1 1 0 1 1 1 0 Transposase DDE domain DUF1495 PF07381.6 gi|147920691|ref|YP_685518.1| - 4.7e-32 109.5 0.5 5.2e-32 109.3 0.3 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.1 gi|147920693|ref|YP_685517.1| - 2.6e-14 52.3 0.0 8.4e-07 28.2 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920693|ref|YP_685517.1| - 1.8e-10 40.4 0.0 0.00025 20.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|147920693|ref|YP_685517.1| - 0.00026 20.6 0.0 0.016 14.8 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|147920693|ref|YP_685517.1| - 0.00082 19.0 0.0 0.085 12.5 0.0 2.4 2 0 0 2 2 2 1 MarR family FaeA PF04703.7 gi|147920693|ref|YP_685517.1| - 0.0046 17.0 0.1 4.5 7.5 0.0 2.6 2 0 0 2 2 2 2 FaeA-like protein GerE PF00196.14 gi|147920693|ref|YP_685517.1| - 0.012 14.9 0.0 0.91 8.8 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family HTH_34 PF13601.1 gi|147920693|ref|YP_685517.1| - 0.031 14.2 0.0 0.081 12.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|147920693|ref|YP_685517.1| - 0.037 13.4 0.0 0.54 9.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|147920693|ref|YP_685517.1| - 0.049 13.2 0.0 0.74 9.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|147920693|ref|YP_685517.1| - 0.061 13.4 0.0 3.6 7.7 0.0 2.7 3 0 0 3 3 3 0 Transcriptional regulator HTH_28 PF13518.1 gi|147920693|ref|YP_685517.1| - 0.08 12.9 0.1 1.1 9.3 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|147920693|ref|YP_685517.1| - 0.086 12.5 0.0 0.44 10.2 0.0 1.9 1 1 1 2 2 2 0 Transposase DUF2407 PF10302.4 gi|147920693|ref|YP_685517.1| - 0.15 12.3 0.4 6.8 6.9 0.0 2.2 1 1 0 2 2 2 0 DUF2407 ubiquitin-like domain PSII_Ycf12 PF05969.6 gi|147920693|ref|YP_685517.1| - 8.1 6.1 6.3 1.9 8.1 1.0 2.4 2 1 0 2 2 2 0 Photosystem II complex subunit Ycf12 HTH_24 PF13412.1 gi|147920694|ref|YP_685504.1| - 3.3e-15 55.1 0.3 1.8e-07 30.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920694|ref|YP_685504.1| - 7.7e-07 28.8 0.0 0.00019 21.1 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|147920694|ref|YP_685504.1| - 0.0016 17.9 0.0 0.06 12.8 0.0 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147920694|ref|YP_685504.1| - 0.0017 17.7 0.0 2.2 7.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_23 PF13384.1 gi|147920694|ref|YP_685504.1| - 0.0027 17.3 0.1 0.25 11.0 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain Terminase_5 PF06056.7 gi|147920694|ref|YP_685504.1| - 0.0082 15.6 0.1 1.3 8.6 0.0 2.5 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) MepB PF08877.5 gi|147920694|ref|YP_685504.1| - 0.022 14.2 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 MepB protein HTH_IclR PF09339.5 gi|147920694|ref|YP_685504.1| - 0.024 14.1 0.0 1.9 8.1 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|147920694|ref|YP_685504.1| - 0.031 13.9 0.0 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|147920694|ref|YP_685504.1| - 0.035 13.4 0.0 5.9 6.2 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family RCC1 PF00415.13 gi|147920696|ref|YP_685502.1| - 3.1e-49 164.9 39.6 6.7e-11 42.2 0.8 9.4 9 1 0 9 9 9 9 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|147920696|ref|YP_685502.1| - 2e-44 148.3 41.8 1.5e-09 37.2 0.8 7.8 7 1 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat ABC2_membrane_2 PF12679.2 gi|147920697|ref|YP_685501.1| - 4.9e-23 81.3 19.4 6.6e-23 80.9 13.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920697|ref|YP_685501.1| - 4.3e-12 45.7 26.9 6.4e-12 45.1 18.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920697|ref|YP_685501.1| - 1.8e-06 27.3 18.6 1.8e-06 27.3 12.9 2.1 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920697|ref|YP_685501.1| - 3.9e-06 26.1 24.3 4.8e-06 25.8 16.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147920698|ref|YP_685500.1| - 7.7e-19 67.5 25.7 1.3e-18 66.8 17.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920698|ref|YP_685500.1| - 7.2e-11 41.6 43.3 1.4e-10 40.7 30.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920698|ref|YP_685500.1| - 9.5e-06 24.8 34.6 9.5e-06 24.8 24.0 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|147920700|ref|YP_685497.1| - 1e-29 103.5 0.0 1.5e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920700|ref|YP_685497.1| - 1.9e-12 47.7 0.0 4.8e-07 30.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|147920700|ref|YP_685497.1| - 1.4e-05 25.5 0.0 2.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|147920700|ref|YP_685497.1| - 0.0038 17.5 0.0 0.0059 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147920700|ref|YP_685497.1| - 0.024 14.1 0.4 0.051 13.0 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|147920700|ref|YP_685497.1| - 0.025 14.0 0.0 0.077 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_15 PF13175.1 gi|147920700|ref|YP_685497.1| - 0.073 12.1 0.0 0.3 10.0 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|147920700|ref|YP_685497.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|147920700|ref|YP_685497.1| - 0.081 11.6 0.1 0.15 10.8 0.1 1.4 1 0 0 1 1 1 0 ArgK protein MMR_HSR1 PF01926.18 gi|147920700|ref|YP_685497.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase CarboxypepD_reg PF13620.1 gi|147920701|ref|YP_685496.1| - 1.9e-20 72.6 21.0 2.5e-12 46.6 2.7 3.9 3 2 1 4 4 4 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147920701|ref|YP_685496.1| - 2.7e-12 46.5 9.7 1.8e-09 37.5 0.3 3.4 4 0 0 4 4 3 2 Domain of unknown function (DUF4480) NPCBM_assoc PF10633.4 gi|147920701|ref|YP_685496.1| - 1.4e-06 28.2 7.1 0.00073 19.5 0.1 3.8 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|147920701|ref|YP_685496.1| - 6.3e-06 26.1 14.4 0.0021 18.0 0.2 4.4 3 1 2 5 5 5 2 CARDB DUF11 PF01345.13 gi|147920701|ref|YP_685496.1| - 2.3e-05 24.3 14.8 0.032 14.2 1.2 4.0 3 0 0 3 3 3 2 Domain of unknown function DUF11 phage_tail_N PF08400.5 gi|147920701|ref|YP_685496.1| - 3.2e-05 23.6 9.2 0.0027 17.4 0.4 3.8 2 1 1 3 3 3 2 Prophage tail fibre N-terminal PEGA PF08308.6 gi|147920701|ref|YP_685496.1| - 0.00039 20.1 0.3 0.086 12.6 0.0 3.0 2 0 0 2 2 2 1 PEGA domain DUF4198 PF10670.4 gi|147920701|ref|YP_685496.1| - 0.0008 19.4 3.5 0.017 15.1 0.1 3.3 3 1 0 3 3 3 1 Domain of unknown function (DUF4198) MG1 PF11974.3 gi|147920701|ref|YP_685496.1| - 0.013 16.0 1.3 0.013 16.0 0.9 3.5 2 2 1 3 3 3 0 Alpha-2-macroglobulin MG1 domain PI3K_rbd PF00794.13 gi|147920701|ref|YP_685496.1| - 0.091 12.7 0.0 0.53 10.2 0.0 2.1 2 0 0 2 2 2 0 PI3-kinase family, ras-binding domain DUF1034 PF06280.7 gi|147920701|ref|YP_685496.1| - 0.46 10.9 9.7 7.9 6.9 0.0 4.1 3 1 0 3 3 3 0 Fn3-like domain (DUF1034) DUF3869 PF12985.2 gi|147920701|ref|YP_685496.1| - 1.2 9.6 11.1 1.2 9.6 0.5 4.0 2 2 2 4 4 4 0 Domain of unknown function (DUF3869) DUF824 PF05688.6 gi|147920701|ref|YP_685496.1| - 2.4 7.8 11.0 1.9 8.2 0.0 4.7 6 0 0 6 6 6 0 Salmonella repeat of unknown function (DUF824) YtkA PF13115.1 gi|147920701|ref|YP_685496.1| - 6.9 7.1 8.9 4.3 7.7 0.0 4.5 5 1 1 6 6 6 0 YtkA-like YbaB_DNA_bd PF02575.11 gi|147920701|ref|YP_685496.1| - 7.1 6.5 6.5 7.4 6.5 0.0 3.6 4 0 0 4 4 4 0 YbaB/EbfC DNA-binding family IGPS PF00218.16 gi|147920702|ref|YP_685494.1| - 3.6e-65 219.5 0.0 4.3e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|147920702|ref|YP_685494.1| - 0.0093 15.2 0.0 0.22 10.7 0.0 2.1 2 0 0 2 2 2 1 Histidine biosynthesis protein Chorismate_bind PF00425.13 gi|147920703|ref|YP_685493.1| - 9.7e-95 316.7 0.0 1.3e-94 316.3 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|147920703|ref|YP_685493.1| - 1e-32 113.0 0.0 6.6e-32 110.4 0.0 2.3 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region DUF1398 PF07166.6 gi|147920703|ref|YP_685493.1| - 0.1 12.5 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1398) Glycos_transf_3 PF00591.16 gi|147920704|ref|YP_685492.1| - 2.7e-97 325.1 0.1 4.6e-97 324.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain GATase PF00117.23 gi|147920704|ref|YP_685492.1| - 2.5e-55 186.9 0.0 3.6e-55 186.3 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Glycos_trans_3N PF02885.12 gi|147920704|ref|YP_685492.1| - 2.1e-24 84.8 0.8 5.1e-24 83.6 0.5 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Peptidase_C26 PF07722.8 gi|147920704|ref|YP_685492.1| - 3.6e-12 46.1 0.1 2e-11 43.7 0.0 2.3 1 1 1 2 2 2 1 Peptidase C26 PRAI PF00697.17 gi|147920705|ref|YP_685491.1| - 4.4e-37 127.5 0.0 5e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ThiG PF05690.9 gi|147920705|ref|YP_685491.1| - 0.022 13.8 0.1 0.04 13.0 0.1 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|147920705|ref|YP_685491.1| - 0.025 13.7 2.0 0.45 9.6 1.4 2.0 1 1 0 1 1 1 0 Nitronate monooxygenase TMP-TENI PF02581.12 gi|147920705|ref|YP_685491.1| - 0.095 11.8 0.0 0.23 10.5 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI PALP PF00291.20 gi|147920706|ref|YP_685490.1| - 4.2e-41 141.1 0.3 5.1e-41 140.8 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|147920706|ref|YP_685490.1| - 0.082 12.5 0.2 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Trp_syntA PF00290.15 gi|147920707|ref|YP_685489.1| - 2.6e-87 291.6 0.6 2.8e-87 291.5 0.4 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|147920707|ref|YP_685489.1| - 0.00016 21.0 0.3 0.00069 18.9 0.2 2.1 1 1 1 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|147920707|ref|YP_685489.1| - 0.019 14.0 1.1 0.033 13.2 0.3 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Staph_haemo PF05480.6 gi|147920707|ref|YP_685489.1| - 0.15 11.8 6.3 0.73 9.5 1.1 3.0 4 0 0 4 4 4 0 Staphylococcus haemolytic protein HTH_24 PF13412.1 gi|147920709|ref|YP_685487.1| - 9.9e-06 24.8 0.0 1.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147920709|ref|YP_685487.1| - 0.0012 18.4 0.1 0.0019 17.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HrcA_DNA-bdg PF03444.10 gi|147920709|ref|YP_685487.1| - 0.0027 17.0 0.0 0.0037 16.6 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.5 gi|147920709|ref|YP_685487.1| - 0.0028 17.1 0.1 0.0038 16.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|147920709|ref|YP_685487.1| - 0.012 15.3 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|147920709|ref|YP_685487.1| - 0.044 14.0 0.0 0.069 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|147920709|ref|YP_685487.1| - 0.063 12.8 0.0 0.072 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|147920709|ref|YP_685487.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|147920709|ref|YP_685487.1| - 0.11 12.3 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NPCBM_assoc PF10633.4 gi|147920710|ref|YP_685486.1| - 2.5e-28 97.9 6.3 1.1e-21 76.6 1.9 3.7 3 0 0 3 3 3 3 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.3 gi|147920710|ref|YP_685486.1| - 2.1e-07 31.0 3.5 0.035 14.2 0.1 3.6 3 1 0 3 3 3 3 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1034 PF06280.7 gi|147920710|ref|YP_685486.1| - 2.2e-06 28.0 4.1 0.017 15.5 0.0 3.6 2 1 0 3 3 3 2 Fn3-like domain (DUF1034) Alpha_adaptinC2 PF02883.15 gi|147920710|ref|YP_685486.1| - 0.00017 21.8 0.3 0.00054 20.2 0.1 1.9 2 0 0 2 2 2 1 Adaptin C-terminal domain Transglut_N PF00868.15 gi|147920710|ref|YP_685486.1| - 0.00032 20.6 1.4 6.1 6.9 0.0 3.7 3 1 0 3 3 3 1 Transglutaminase family A2M_N PF01835.14 gi|147920710|ref|YP_685486.1| - 0.00034 20.8 0.8 2.9 8.1 0.0 3.4 2 1 1 3 3 3 1 MG2 domain DUF4625 PF15418.1 gi|147920710|ref|YP_685486.1| - 0.0047 17.0 0.0 4.8 7.3 0.0 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) CARDB PF07705.6 gi|147920710|ref|YP_685486.1| - 0.0047 16.9 1.3 0.0047 16.9 0.9 3.9 3 1 1 4 4 4 1 CARDB DUF11 PF01345.13 gi|147920710|ref|YP_685486.1| - 0.15 12.1 9.4 0.11 12.5 0.5 3.6 2 1 1 3 3 3 0 Domain of unknown function DUF11 ABC2_membrane_2 PF12679.2 gi|147920711|ref|YP_685485.1| - 7.8e-45 152.8 16.0 9e-45 152.6 11.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920711|ref|YP_685485.1| - 1.9e-20 73.0 20.6 1.9e-20 73.0 14.3 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920711|ref|YP_685485.1| - 7.6e-08 31.7 32.8 1.4e-06 27.6 18.6 2.4 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920711|ref|YP_685485.1| - 9.7e-05 21.7 19.0 9.7e-05 21.7 13.2 2.9 3 0 0 3 3 3 1 ABC-2 family transporter protein DUF4231 PF14015.1 gi|147920711|ref|YP_685485.1| - 2.3 8.2 0.0 2.3 8.2 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) PIG-P PF08510.7 gi|147920711|ref|YP_685485.1| - 3.1 7.4 0.0 3.1 7.4 0.0 3.0 3 1 0 3 3 3 0 PIG-P ABC_tran PF00005.22 gi|147920712|ref|YP_685484.1| - 1e-27 97.1 0.0 1.7e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920712|ref|YP_685484.1| - 4.8e-13 49.7 0.1 1.6e-08 34.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|147920712|ref|YP_685484.1| - 2e-07 31.3 0.0 3.6e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|147920712|ref|YP_685484.1| - 0.0052 17.1 0.1 0.0085 16.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|147920712|ref|YP_685484.1| - 0.014 14.9 0.1 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|147920712|ref|YP_685484.1| - 0.027 13.5 0.0 0.16 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.17 gi|147920712|ref|YP_685484.1| - 0.059 12.8 0.0 0.099 12.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PPC PF04151.10 gi|147920713|ref|YP_685483.1| - 0.0002 22.2 0.2 0.0002 22.2 0.1 2.2 3 0 0 3 3 3 1 Bacterial pre-peptidase C-terminal domain HTH_24 PF13412.1 gi|147920714|ref|YP_685482.1| - 3.8e-17 61.4 0.0 2.1e-10 39.8 0.0 2.5 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|147920714|ref|YP_685482.1| - 4.2e-09 36.0 0.0 0.0018 18.0 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|147920714|ref|YP_685482.1| - 4.6e-07 29.4 0.0 0.00031 20.3 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|147920714|ref|YP_685482.1| - 3.4e-06 26.6 0.0 0.016 14.8 0.0 2.6 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|147920714|ref|YP_685482.1| - 0.00013 21.6 0.0 0.21 11.2 0.0 3.0 3 0 0 3 3 3 2 MarR family TrmB PF01978.14 gi|147920714|ref|YP_685482.1| - 0.00014 21.5 0.0 0.19 11.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|147920714|ref|YP_685482.1| - 0.001 18.5 0.0 0.27 10.8 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|147920714|ref|YP_685482.1| - 0.0011 18.9 0.1 0.11 12.5 0.0 2.2 1 1 1 2 2 2 1 Penicillinase repressor HTH_40 PF14493.1 gi|147920714|ref|YP_685482.1| - 0.0028 17.8 0.0 0.14 12.4 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain FeoC PF09012.5 gi|147920714|ref|YP_685482.1| - 0.027 14.1 0.0 41 3.9 0.0 3.2 2 1 1 3 3 3 0 FeoC like transcriptional regulator B PF02216.11 gi|147920714|ref|YP_685482.1| - 0.07 12.9 0.0 6.4 6.6 0.0 2.3 2 0 0 2 2 2 0 B domain EAP30 PF04157.11 gi|147920714|ref|YP_685482.1| - 0.09 11.9 0.0 9.3 5.3 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family FaeA PF04703.7 gi|147920714|ref|YP_685482.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_AsnC-type PF13404.1 gi|147920714|ref|YP_685482.1| - 0.15 11.5 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain NPCBM_assoc PF10633.4 gi|147920715|ref|YP_685481.1| - 2.3e-22 78.8 3.6 1.2e-17 63.6 0.4 3.6 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.3 gi|147920715|ref|YP_685481.1| - 4.7e-08 33.1 1.2 0.011 15.8 0.0 3.6 2 1 0 3 3 3 2 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1034 PF06280.7 gi|147920715|ref|YP_685481.1| - 1.5e-05 25.3 5.5 0.65 10.4 0.5 4.6 2 2 1 3 3 3 3 Fn3-like domain (DUF1034) CARDB PF07705.6 gi|147920715|ref|YP_685481.1| - 0.00017 21.6 4.8 0.0017 18.3 0.3 3.5 3 1 0 3 3 3 1 CARDB DUF11 PF01345.13 gi|147920715|ref|YP_685481.1| - 0.00048 20.1 0.7 0.00048 20.1 0.5 2.9 4 0 0 4 4 4 1 Domain of unknown function DUF11 PI3K_rbd PF00794.13 gi|147920715|ref|YP_685481.1| - 0.011 15.6 0.3 0.2 11.5 0.0 2.8 2 1 1 3 3 3 0 PI3-kinase family, ras-binding domain DUF4625 PF15418.1 gi|147920715|ref|YP_685481.1| - 0.019 15.1 0.0 10 6.2 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) ABC2_membrane_2 PF12679.2 gi|147920716|ref|YP_685480.1| - 2.5e-72 243.0 7.1 2.8e-72 242.9 4.9 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920716|ref|YP_685480.1| - 1.7e-23 82.9 3.9 3e-23 82.2 2.7 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920716|ref|YP_685480.1| - 4.3e-09 35.8 13.4 4.3e-09 35.8 9.3 2.7 1 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147920716|ref|YP_685480.1| - 9.1e-08 31.6 20.0 3.3e-07 29.7 9.8 2.5 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|147920716|ref|YP_685480.1| - 3.5e-07 29.6 19.6 1.3e-06 27.7 13.6 1.8 1 1 0 1 1 1 1 ABC-2 type transporter CcmB PF03379.8 gi|147920716|ref|YP_685480.1| - 0.0004 19.6 9.9 0.0004 19.6 6.9 1.6 2 0 0 2 2 2 1 CcmB protein Nucleoside_tran PF01733.13 gi|147920716|ref|YP_685480.1| - 0.025 13.7 6.3 0.62 9.1 3.9 2.5 2 1 0 2 2 2 0 Nucleoside transporter MSC PF09402.5 gi|147920716|ref|YP_685480.1| - 0.029 13.0 0.2 0.17 10.5 0.0 2.1 2 0 0 2 2 2 0 Man1-Src1p-C-terminal domain PspA_IM30 PF04012.7 gi|147920716|ref|YP_685480.1| - 0.076 12.3 0.2 0.076 12.3 0.1 1.5 2 0 0 2 2 2 0 PspA/IM30 family DivIC PF04977.10 gi|147920716|ref|YP_685480.1| - 0.11 12.0 3.8 0.26 10.7 0.1 2.6 2 0 0 2 2 2 0 Septum formation initiator ABC_tran_2 PF12848.2 gi|147920716|ref|YP_685480.1| - 0.33 10.8 6.2 0.53 10.1 0.5 2.3 2 0 0 2 2 2 0 ABC transporter DUF3679 PF12438.3 gi|147920716|ref|YP_685480.1| - 2.1 7.7 5.8 0.26 10.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3679) ABC_tran PF00005.22 gi|147920717|ref|YP_685479.1| - 3.1e-26 92.2 0.0 4.8e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920717|ref|YP_685479.1| - 2e-12 47.6 0.0 1.4e-09 38.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|147920717|ref|YP_685479.1| - 5e-06 26.9 0.0 9.3e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|147920717|ref|YP_685479.1| - 0.01 16.1 0.1 0.017 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|147920717|ref|YP_685479.1| - 0.014 14.8 0.1 4.8 6.5 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|147920717|ref|YP_685479.1| - 0.027 13.9 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.1 gi|147920717|ref|YP_685479.1| - 0.041 13.4 0.1 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|147920717|ref|YP_685479.1| - 0.077 12.1 0.1 0.2 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 CCG PF02754.11 gi|147920718|ref|YP_685478.1| - 8.2e-20 70.6 7.8 1.7e-14 53.6 0.1 2.7 3 1 0 3 3 3 2 Cysteine-rich domain Fae PF08714.6 gi|147920721|ref|YP_685475.1| - 8.8e-72 240.0 0.9 1.9e-71 238.9 0.6 1.6 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.19 gi|147920721|ref|YP_685475.1| - 2e-23 83.0 0.6 3.4e-23 82.2 0.4 1.4 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|147920721|ref|YP_685475.1| - 5.4e-06 25.6 0.3 1.1e-05 24.6 0.2 1.6 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|147920721|ref|YP_685475.1| - 5.2e-05 22.8 0.5 9e-05 22.0 0.4 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain PcrB PF01884.12 gi|147920721|ref|YP_685475.1| - 0.0025 17.1 3.1 0.0079 15.4 1.2 2.0 1 1 1 2 2 2 1 PcrB family FMN_dh PF01070.13 gi|147920721|ref|YP_685475.1| - 0.019 13.8 0.2 0.035 12.9 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Glyoxalase PF00903.20 gi|147920722|ref|YP_685474.1| - 2.7e-14 53.2 0.0 3e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|147920722|ref|YP_685474.1| - 9.7e-11 42.2 0.0 1.1e-10 42.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|147920722|ref|YP_685474.1| - 0.00063 19.7 0.0 0.00074 19.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|147920722|ref|YP_685474.1| - 0.15 11.9 0.0 0.43 10.4 0.0 1.8 1 1 1 2 2 2 0 Glyoxalase-like domain DUF3788 PF12663.2 gi|147920723|ref|YP_685473.1| - 1.8e-35 121.5 0.0 2e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3788) Sdh_cyt PF01127.17 gi|147920724|ref|YP_685472.1| - 0.062 13.1 0.4 0.062 13.1 0.3 2.1 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2837 PF10997.3 gi|147920724|ref|YP_685472.1| - 0.28 10.2 5.8 0.064 12.3 1.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2837) DUF1469 PF07332.6 gi|147920724|ref|YP_685472.1| - 1.7 8.3 17.1 0.14 11.8 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Yip1 PF04893.12 gi|147920724|ref|YP_685472.1| - 2.9 7.3 25.6 0.19 11.2 13.1 2.0 1 1 1 2 2 2 0 Yip1 domain DUF3382 PF11862.3 gi|147920724|ref|YP_685472.1| - 6.9 6.6 9.0 9.2 6.2 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3382) TIM PF00121.13 gi|147920725|ref|YP_685471.1| - 5.9e-26 91.0 0.2 1.4e-23 83.2 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase NMO PF03060.10 gi|147920725|ref|YP_685471.1| - 2.3e-06 26.9 0.0 4.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.9 gi|147920725|ref|YP_685471.1| - 7.1e-05 22.0 0.2 0.00014 21.0 0.1 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|147920725|ref|YP_685471.1| - 0.00012 21.0 0.1 0.0002 20.3 0.1 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|147920725|ref|YP_685471.1| - 0.0083 15.4 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein Hydrolase_like PF13242.1 gi|147920725|ref|YP_685471.1| - 0.011 15.4 0.1 0.62 9.8 0.1 2.4 2 0 0 2 2 2 0 HAD-hyrolase-like IGPS PF00218.16 gi|147920725|ref|YP_685471.1| - 0.011 14.8 0.0 0.015 14.3 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Glu_synthase PF01645.12 gi|147920725|ref|YP_685471.1| - 0.1 11.5 0.2 0.16 10.8 0.1 1.4 1 1 0 1 1 1 0 Conserved region in glutamate synthase GHL6 PF14871.1 gi|147920725|ref|YP_685471.1| - 0.12 12.3 0.1 1.8 8.5 0.0 2.4 2 1 1 3 3 3 0 Hypothetical glycosyl hydrolase 6 DUF457 PF04307.9 gi|147920726|ref|YP_685470.1| - 3.8e-17 62.0 8.8 4.5e-17 61.8 6.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Glycos_transf_3 PF00591.16 gi|147920726|ref|YP_685470.1| - 0.21 10.9 2.2 0.34 10.2 1.6 1.2 1 0 0 1 1 1 0 Glycosyl transferase family, a/b domain DeoC PF01791.4 gi|147920727|ref|YP_685469.1| - 2.9e-38 131.5 0.0 3.4e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase OS-D PF03392.8 gi|147920728|ref|YP_685468.1| - 0.057 13.4 2.6 1.5 8.8 1.4 2.4 2 0 0 2 2 2 0 Insect pheromone-binding family, A10/OS-D DUF866 PF05907.8 gi|147920728|ref|YP_685468.1| - 0.13 11.7 3.0 0.062 12.7 0.2 1.8 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF866) Imm37 PF15598.1 gi|147920729|ref|YP_685467.1| - 0.034 14.0 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 37 MarR PF01047.17 gi|147920730|ref|YP_685466.1| - 5.9e-13 48.3 0.0 1.1e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|147920730|ref|YP_685466.1| - 2e-12 46.5 0.1 3.6e-12 45.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|147920730|ref|YP_685466.1| - 3.2e-09 36.9 0.0 5.4e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain FeoC PF09012.5 gi|147920730|ref|YP_685466.1| - 8.4e-05 22.2 0.0 0.00016 21.2 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|147920730|ref|YP_685466.1| - 0.0034 17.4 0.0 0.0047 17.0 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.1 gi|147920730|ref|YP_685466.1| - 0.0044 17.0 0.0 0.0066 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|147920730|ref|YP_685466.1| - 0.0046 16.8 0.0 0.99 9.3 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|147920730|ref|YP_685466.1| - 0.0053 16.3 0.0 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|147920730|ref|YP_685466.1| - 0.0061 15.9 0.1 0.0098 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|147920730|ref|YP_685466.1| - 0.015 14.9 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|147920730|ref|YP_685466.1| - 0.026 14.6 0.0 0.058 13.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|147920730|ref|YP_685466.1| - 0.05 13.5 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|147920730|ref|YP_685466.1| - 0.07 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|147920730|ref|YP_685466.1| - 0.078 12.7 0.0 0.49 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HxlR PF01638.12 gi|147920730|ref|YP_685466.1| - 0.081 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.9 gi|147920730|ref|YP_685466.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.6 gi|147920730|ref|YP_685466.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein CN_hydrolase PF00795.17 gi|147920731|ref|YP_685465.1| - 7.4e-24 84.1 0.0 1e-23 83.6 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF1801 PF08818.6 gi|147920732|ref|YP_685464.1| - 3.4e-18 65.6 0.0 4.1e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) Methyltransf_11 PF08241.7 gi|147920733|ref|YP_685463.1| - 6.9e-11 42.4 0.0 1e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920733|ref|YP_685463.1| - 3.6e-10 40.2 0.0 7.5e-10 39.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920733|ref|YP_685463.1| - 2.3e-08 34.5 0.0 3.4e-08 34.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920733|ref|YP_685463.1| - 1e-07 31.7 0.0 1.3e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|147920733|ref|YP_685463.1| - 3.5e-07 29.7 0.0 4.9e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.1 gi|147920733|ref|YP_685463.1| - 5.4e-07 29.3 0.0 7e-07 28.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920733|ref|YP_685463.1| - 7.8e-06 26.1 0.0 1.4e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|147920733|ref|YP_685463.1| - 0.00025 20.5 0.0 0.00038 19.8 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|147920733|ref|YP_685463.1| - 0.0013 17.9 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|147920733|ref|YP_685463.1| - 0.0022 18.0 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|147920733|ref|YP_685463.1| - 0.005 15.8 0.0 0.0075 15.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|147920733|ref|YP_685463.1| - 0.033 13.8 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920733|ref|YP_685463.1| - 0.039 13.0 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Pro_isomerase PF00160.16 gi|147920734|ref|YP_685462.1| - 1.2e-46 158.7 0.7 1.4e-46 158.5 0.5 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PrsW-protease PF13367.1 gi|147920735|ref|YP_685461.1| - 2.3e-40 137.8 16.9 2.3e-40 137.8 11.7 3.1 2 1 1 3 3 3 1 Protease prsW family Motile_Sperm PF00635.21 gi|147920735|ref|YP_685461.1| - 0.13 11.9 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 MSP (Major sperm protein) domain DUF3485 PF11984.3 gi|147920735|ref|YP_685461.1| - 0.19 10.7 1.4 0.89 8.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3485) PIRT PF15099.1 gi|147920735|ref|YP_685461.1| - 3.2 6.9 8.1 0.26 10.4 0.3 2.8 3 0 0 3 3 3 0 Phosphoinositide-interacting protein family Exonuc_VII_S PF02609.11 gi|147920736|ref|YP_685460.1| - 0.026 14.2 0.1 0.058 13.1 0.1 1.6 1 0 0 1 1 1 0 Exonuclease VII small subunit YtzH PF14165.1 gi|147920736|ref|YP_685460.1| - 0.034 14.3 0.5 0.067 13.4 0.3 1.5 1 1 0 1 1 1 0 YtzH-like protein Peptidase_S24 PF00717.18 gi|147920737|ref|YP_685459.1| - 0.053 13.1 0.2 0.13 11.9 0.2 1.7 1 1 0 1 1 1 0 Peptidase S24-like CPSase_L_D2 PF02786.12 gi|147920738|ref|YP_685458.1| - 4.1e-76 254.9 0.0 6.1e-76 254.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|147920738|ref|YP_685458.1| - 8.8e-46 154.5 0.0 1.8e-45 153.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|147920738|ref|YP_685458.1| - 5.7e-41 138.8 0.0 1.2e-40 137.7 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain BPL_LplA_LipB PF03099.14 gi|147920738|ref|YP_685458.1| - 8e-22 77.5 0.0 2.2e-21 76.1 0.0 1.8 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family ATP-grasp_4 PF13535.1 gi|147920738|ref|YP_685458.1| - 4.6e-15 55.8 0.0 1e-14 54.6 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|147920738|ref|YP_685458.1| - 1.5e-12 46.8 0.0 1.4e-11 43.7 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|147920738|ref|YP_685458.1| - 2.4e-06 27.0 0.0 5.1e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|147920738|ref|YP_685458.1| - 2e-05 24.0 0.0 4.5e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain BPL_C PF02237.12 gi|147920738|ref|YP_685458.1| - 0.00012 21.7 0.0 0.0003 20.4 0.0 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain RimK PF08443.6 gi|147920738|ref|YP_685458.1| - 0.0092 15.4 0.0 0.076 12.4 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain PYC_OADA PF02436.13 gi|147920739|ref|YP_685457.1| - 1.3e-64 217.2 2.0 2.6e-64 216.2 1.4 1.5 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|147920739|ref|YP_685457.1| - 3.6e-42 144.6 0.0 6.1e-42 143.9 0.0 1.4 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.17 gi|147920739|ref|YP_685457.1| - 2e-19 68.9 5.2 5.6e-19 67.5 3.6 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|147920739|ref|YP_685457.1| - 4.8e-09 35.7 0.7 3.6e-06 26.5 0.2 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.1 gi|147920739|ref|YP_685457.1| - 3.3e-05 23.5 2.6 5.7e-05 22.7 0.9 2.2 2 0 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.1 gi|147920739|ref|YP_685457.1| - 7e-05 23.1 2.2 0.063 13.6 0.1 3.4 3 0 0 3 3 3 1 HlyD family secretion protein HlyD PF00529.15 gi|147920739|ref|YP_685457.1| - 0.0004 19.8 1.5 0.0042 16.4 0.3 2.3 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_2 PF12700.2 gi|147920739|ref|YP_685457.1| - 0.0007 18.8 2.4 0.0077 15.4 0.4 2.2 1 1 1 2 2 2 1 HlyD family secretion protein GCV_H PF01597.14 gi|147920739|ref|YP_685457.1| - 0.0024 17.5 1.2 0.013 15.2 0.8 2.3 1 1 0 1 1 1 1 Glycine cleavage H-protein TGT PF01702.13 gi|147920739|ref|YP_685457.1| - 0.0038 16.5 0.1 0.0061 15.8 0.0 1.3 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase NQRA PF05896.6 gi|147920739|ref|YP_685457.1| - 0.0091 15.2 1.0 0.017 14.3 0.7 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PYNP_C PF07831.8 gi|147920739|ref|YP_685457.1| - 0.042 13.3 0.5 0.27 10.6 0.1 2.3 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain PASTA PF03793.14 gi|147920739|ref|YP_685457.1| - 0.27 10.8 3.8 2 8.1 0.3 3.2 2 1 1 3 3 3 0 PASTA domain YqfD PF06898.6 gi|147920739|ref|YP_685457.1| - 9.5 4.8 10.6 8.6 4.9 0.1 3.3 3 1 1 4 4 4 0 Putative stage IV sporulation protein YqfD DEC-1_N PF04625.8 gi|147920741|ref|YP_685455.1| - 0.74 8.4 7.9 0.96 8.0 5.5 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region SAICAR_synt PF01259.13 gi|147920742|ref|YP_685454.1| - 3.1e-33 114.9 0.0 8.2e-19 67.6 0.0 2.0 2 0 0 2 2 2 2 SAICAR synthetase Flavodoxin_1 PF00258.20 gi|147920743|ref|YP_685453.1| - 2.7e-09 37.1 0.1 3.6e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin Fer4_10 PF13237.1 gi|147920743|ref|YP_685453.1| - 5.3e-08 32.5 8.4 8.5e-08 31.8 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Flavodoxin_3 PF12641.2 gi|147920743|ref|YP_685453.1| - 4.4e-07 29.4 0.0 1e-06 28.2 0.0 1.5 1 1 0 1 1 1 1 Flavodoxin domain Fer4_7 PF12838.2 gi|147920743|ref|YP_685453.1| - 1.3e-06 28.6 2.8 0.0037 17.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Flavodoxin_4 PF12682.2 gi|147920743|ref|YP_685453.1| - 2e-05 24.0 0.0 0.0072 15.7 0.0 2.3 1 1 1 2 2 2 2 Flavodoxin Fer4_9 PF13187.1 gi|147920743|ref|YP_685453.1| - 0.00022 21.3 10.8 0.0016 18.6 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920743|ref|YP_685453.1| - 0.00024 21.4 3.7 0.093 13.1 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Flavodoxin_5 PF12724.2 gi|147920743|ref|YP_685453.1| - 0.00027 20.9 0.0 0.00038 20.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Fer4 PF00037.22 gi|147920743|ref|YP_685453.1| - 0.00085 18.8 8.7 0.0027 17.2 0.5 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147920743|ref|YP_685453.1| - 0.001 18.8 11.8 0.061 13.2 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147920743|ref|YP_685453.1| - 0.001 19.7 8.4 0.21 12.3 0.2 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Glyco_transf_4 PF13439.1 gi|147920743|ref|YP_685453.1| - 0.0064 16.2 0.0 0.024 14.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Fer4_17 PF13534.1 gi|147920743|ref|YP_685453.1| - 0.0077 16.5 2.7 0.52 10.6 0.1 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920743|ref|YP_685453.1| - 0.0079 16.0 9.7 0.14 12.1 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147920743|ref|YP_685453.1| - 0.021 15.1 10.4 0.12 12.7 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147920743|ref|YP_685453.1| - 0.027 14.4 9.3 0.15 12.1 0.6 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147920743|ref|YP_685453.1| - 0.1 12.4 10.5 0.17 11.7 1.5 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147920743|ref|YP_685453.1| - 0.19 11.6 5.4 1.7 8.5 3.8 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147920743|ref|YP_685453.1| - 0.38 11.4 13.3 0.74 10.5 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain ABC2_membrane_5 PF13346.1 gi|147920744|ref|YP_685452.1| - 6.3e-05 22.3 12.0 7.3e-05 22.1 8.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Acyl_transf_3 PF01757.17 gi|147920744|ref|YP_685452.1| - 0.00036 19.4 11.6 0.00039 19.3 8.0 1.0 1 0 0 1 1 1 1 Acyltransferase family DUF3397 PF11877.3 gi|147920744|ref|YP_685452.1| - 0.0021 18.0 7.2 0.0028 17.6 5.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3397) Polysacc_synt_3 PF13440.1 gi|147920744|ref|YP_685452.1| - 0.0077 15.7 11.2 0.011 15.2 7.8 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein DUF4396 PF14342.1 gi|147920744|ref|YP_685452.1| - 0.02 15.0 7.5 0.026 14.6 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4396) DUF1516 PF07457.6 gi|147920744|ref|YP_685452.1| - 0.027 14.5 3.3 0.053 13.6 2.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1516) DUF3996 PF13161.1 gi|147920744|ref|YP_685452.1| - 0.095 12.3 0.1 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) NnrU PF07298.6 gi|147920744|ref|YP_685452.1| - 0.66 9.3 5.7 0.8 9.0 4.0 1.1 1 0 0 1 1 1 0 NnrU protein MatE PF01554.13 gi|147920744|ref|YP_685452.1| - 1.7 8.2 11.8 0.38 10.3 1.6 2.6 1 1 1 2 2 2 0 MatE VIT1 PF01988.14 gi|147920744|ref|YP_685452.1| - 1.8 7.9 12.0 0.17 11.3 3.6 1.8 1 1 0 1 1 1 0 VIT family MFS_1 PF07690.11 gi|147920744|ref|YP_685452.1| - 2.8 6.5 14.9 5.3 5.6 10.4 1.4 1 1 0 1 1 1 0 Major Facilitator Superfamily Peptidase_M50 PF02163.17 gi|147920745|ref|YP_685451.1| - 5.5e-29 100.4 0.0 2.7e-28 98.2 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|147920745|ref|YP_685451.1| - 1.6e-20 72.7 1.0 5.8e-10 38.9 0.0 2.3 1 1 1 2 2 2 2 PDZ domain PDZ PF00595.19 gi|147920745|ref|YP_685451.1| - 1.8e-14 53.6 1.8 2e-07 31.1 0.0 2.9 2 1 1 3 3 3 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|147920745|ref|YP_685451.1| - 0.0026 17.5 0.1 0.33 10.7 0.0 2.4 2 0 0 2 2 2 2 Tricorn protease PDZ domain CutA1 PF03091.10 gi|147920746|ref|YP_685450.1| - 5.1e-30 103.1 0.0 5.7e-30 102.9 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein NTP_transf_2 PF01909.18 gi|147920747|ref|YP_685449.1| - 1.6e-05 25.1 0.1 4.2e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain 2-Hacid_dh_C PF02826.14 gi|147920748|ref|YP_685447.1| - 7.8e-65 217.3 0.0 1.1e-64 216.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|147920748|ref|YP_685447.1| - 2.5e-23 81.9 0.0 3.1e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|147920748|ref|YP_685447.1| - 0.0002 21.2 0.0 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|147920748|ref|YP_685447.1| - 0.00068 19.2 0.1 0.12 11.9 0.0 2.7 1 1 1 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|147920748|ref|YP_685447.1| - 0.025 14.2 0.1 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|147920748|ref|YP_685447.1| - 0.091 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_10 PF13460.1 gi|147920748|ref|YP_685447.1| - 0.11 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding Ribosomal_S17e PF00833.13 gi|147920749|ref|YP_685445.1| - 3.1e-14 52.7 0.3 3.2e-14 52.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.17 gi|147920750|ref|YP_685444.1| - 4.6e-96 320.8 0.3 5.3e-96 320.6 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family SIS PF01380.17 gi|147920750|ref|YP_685444.1| - 0.065 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 SIS domain DapB_C PF05173.9 gi|147920751|ref|YP_685443.1| - 5.3e-45 152.4 0.1 7.8e-45 151.8 0.0 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|147920751|ref|YP_685443.1| - 1.9e-27 95.6 3.5 3.1e-27 94.9 2.4 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Peripla_BP_6 PF13458.1 gi|147920751|ref|YP_685443.1| - 0.0018 17.7 0.4 0.017 14.5 0.3 1.9 1 1 1 2 2 2 1 Periplasmic binding protein Gp_dh_N PF00044.19 gi|147920751|ref|YP_685443.1| - 0.0071 16.3 1.1 0.021 14.8 0.8 1.7 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|147920751|ref|YP_685443.1| - 0.016 15.7 0.9 0.056 13.9 0.3 2.0 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.21 gi|147920751|ref|YP_685443.1| - 0.022 14.3 0.4 0.042 13.4 0.2 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Semialdhyde_dh PF01118.19 gi|147920751|ref|YP_685443.1| - 0.054 13.8 1.1 0.12 12.6 0.3 1.7 1 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|147920751|ref|YP_685443.1| - 0.07 13.2 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.11 gi|147920751|ref|YP_685443.1| - 0.12 12.7 1.5 0.26 11.6 0.7 1.8 1 1 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Inhibitor_I42 PF09394.5 gi|147920752|ref|YP_685442.1| - 1e-47 160.3 2.3 4.3e-25 87.8 0.1 2.2 2 0 0 2 2 2 2 Chagasin family peptidase inhibitor I42 Myco_19_kDa PF05481.7 gi|147920752|ref|YP_685442.1| - 2.2 8.0 7.5 0.13 12.1 0.4 2.2 2 1 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen TALPID3 PF15324.1 gi|147920752|ref|YP_685442.1| - 2.8 5.1 3.8 3.3 4.9 2.6 1.0 1 0 0 1 1 1 0 Hedgehog signalling target ThiI PF02568.9 gi|147920753|ref|YP_685441.1| - 3.4e-63 212.6 0.0 5.2e-63 212.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|147920753|ref|YP_685441.1| - 9.8e-18 64.4 0.0 1.8e-17 63.5 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|147920753|ref|YP_685441.1| - 8.5e-07 28.4 0.0 0.061 12.5 0.0 2.8 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|147920753|ref|YP_685441.1| - 7.3e-05 21.4 0.0 0.00026 19.6 0.0 1.9 2 0 0 2 2 2 1 tRNA methyl transferase Radical_SAM PF04055.16 gi|147920756|ref|YP_685438.1| - 6.5e-15 55.6 0.1 9.9e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147920756|ref|YP_685438.1| - 0.028 14.5 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|147920757|ref|YP_685437.1| - 6.1e-28 97.5 59.7 6.3e-15 54.7 19.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|147920757|ref|YP_685437.1| - 0.85 7.6 35.9 7.8 4.4 24.9 1.9 1 1 0 1 1 1 0 Transmembrane secretion effector DUF2099 PF09872.4 gi|147920758|ref|YP_685436.1| - 2.3e-111 370.9 3.4 2.6e-111 370.7 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Semialdhyde_dhC PF02774.13 gi|147920759|ref|YP_685435.1| - 6.7e-40 136.9 0.0 1.5e-39 135.8 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|147920759|ref|YP_685435.1| - 1.5e-35 122.1 0.0 2.8e-35 121.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|147920759|ref|YP_685435.1| - 0.0017 18.9 0.0 0.0032 18.0 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAD_binding_10 PF13460.1 gi|147920759|ref|YP_685435.1| - 0.0045 17.0 0.0 0.0079 16.2 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|147920759|ref|YP_685435.1| - 0.0071 16.2 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DUF2611 PF11022.3 gi|147920760|ref|YP_685434.1| - 0.054 13.5 0.0 0.062 13.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2611) CarboxypepD_reg PF13620.1 gi|147920762|ref|YP_685432.1| - 3.8e-06 26.8 2.2 6.2e-06 26.1 1.5 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|147920762|ref|YP_685432.1| - 0.00065 19.4 0.4 0.0011 18.7 0.2 1.3 1 0 0 1 1 1 1 Cna protein B-type domain fn3_3 PF14686.1 gi|147920762|ref|YP_685432.1| - 0.02 14.9 0.1 0.028 14.5 0.1 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II DUF4040 PF13244.1 gi|147920762|ref|YP_685432.1| - 3.1 7.8 7.6 0.34 10.9 2.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4040) Lactamase_B_2 PF12706.2 gi|147920763|ref|YP_685431.1| - 2.1e-27 95.9 0.0 3.6e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147920763|ref|YP_685431.1| - 3.6e-14 52.8 0.0 2.9e-13 49.8 0.0 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|147920763|ref|YP_685431.1| - 2.2e-07 30.2 0.0 5.1e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease Repressor_Mnt PF11423.3 gi|147920764|ref|YP_685430.1| - 0.29 10.5 2.2 1 8.7 0.1 2.4 2 0 0 2 2 2 0 Regulatory protein Mnt MFS_1 PF07690.11 gi|147920766|ref|YP_685428.1| - 1.1e-34 119.7 42.5 1.1e-34 119.7 29.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147920766|ref|YP_685428.1| - 5.1e-06 25.1 34.9 0.00026 19.5 9.2 2.9 2 1 1 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|147920766|ref|YP_685428.1| - 0.0016 17.0 26.3 0.014 14.0 3.2 4.3 3 2 0 4 4 4 3 Sugar (and other) transporter MFS_1_like PF12832.2 gi|147920766|ref|YP_685428.1| - 0.015 15.1 0.6 0.015 15.1 0.4 3.7 4 0 0 4 4 4 0 MFS_1 like family MFS_1 PF07690.11 gi|147920767|ref|YP_685427.1| - 9.5e-31 106.7 58.7 1e-22 80.3 22.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147920767|ref|YP_685427.1| - 2.6e-05 22.7 32.1 5.9e-05 21.6 22.3 1.7 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|147920767|ref|YP_685427.1| - 3.3e-05 23.5 2.6 0.00014 21.6 0.4 3.0 2 0 0 2 2 2 1 MFS_1 like family OATP PF03137.15 gi|147920767|ref|YP_685427.1| - 0.0033 15.5 12.9 0.0096 14.0 0.8 2.5 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family YtpI PF14007.1 gi|147920767|ref|YP_685427.1| - 0.013 15.3 1.9 0.023 14.6 0.3 2.2 2 0 0 2 2 2 0 YtpI-like protein Sugar_tr PF00083.19 gi|147920767|ref|YP_685427.1| - 0.074 11.6 32.0 0.2 10.1 9.1 2.8 2 1 0 2 2 2 0 Sugar (and other) transporter AP_endonuc_2 PF01261.19 gi|147920768|ref|YP_685426.1| - 2.1e-33 115.4 0.0 2.7e-33 115.0 0.0 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel RNA_binding PF01877.12 gi|147920769|ref|YP_685425.1| - 1.2e-25 89.8 0.0 2.6e-25 88.7 0.0 1.6 1 1 0 1 1 1 1 RNA binding AAA_18 PF13238.1 gi|147920769|ref|YP_685425.1| - 8.2e-16 58.4 0.0 1.6e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147920769|ref|YP_685425.1| - 6.2e-10 39.9 0.0 1.7e-09 38.5 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|147920769|ref|YP_685425.1| - 2.4e-09 37.2 0.0 5.4e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|147920769|ref|YP_685425.1| - 0.0047 16.8 0.1 0.0094 15.8 0.1 1.6 1 1 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|147920769|ref|YP_685425.1| - 0.029 13.4 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin LRRCT PF01463.19 gi|147920770|ref|YP_685424.1| - 0.022 14.9 0.1 0.086 13.1 0.1 2.1 1 0 0 1 1 1 0 Leucine rich repeat C-terminal domain ABC2_membrane_4 PF12730.2 gi|147920771|ref|YP_685423.1| - 0.015 14.4 1.0 0.016 14.3 0.2 1.4 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF970 PF06153.6 gi|147920771|ref|YP_685423.1| - 0.075 13.0 0.0 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF970) DUF2207 PF09972.4 gi|147920771|ref|YP_685423.1| - 0.098 11.2 0.2 0.1 11.1 0.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YlaC PF10777.4 gi|147920771|ref|YP_685423.1| - 0.11 12.0 0.4 0.16 11.5 0.3 1.3 1 0 0 1 1 1 0 Inner membrane protein YlaC DUF4131 PF13567.1 gi|147920771|ref|YP_685423.1| - 0.19 11.1 1.0 0.52 9.7 0.7 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Radical_SAM PF04055.16 gi|147920772|ref|YP_685422.1| - 1.4e-16 61.0 0.0 2.2e-16 60.4 0.0 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147920772|ref|YP_685422.1| - 3.5e-14 53.1 0.0 6.2e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147920772|ref|YP_685422.1| - 9.4e-13 48.2 0.0 2.5e-12 46.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain NRDD PF13597.1 gi|147920773|ref|YP_685421.1| - 5.6e-160 533.0 0.0 6.9e-160 532.7 0.0 1.1 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.11 gi|147920773|ref|YP_685421.1| - 3e-12 46.8 0.3 2.1e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 ATP cone domain HD PF01966.17 gi|147920773|ref|YP_685421.1| - 0.02 14.9 0.7 0.044 13.8 0.5 1.6 1 0 0 1 1 1 0 HD domain DNA_pol3_gamma3 PF12169.3 gi|147920773|ref|YP_685421.1| - 0.075 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III subunits gamma and tau domain III DUF460 PF04312.8 gi|147920775|ref|YP_685419.1| - 0.0043 16.5 0.2 0.0087 15.5 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) PDZ_2 PF13180.1 gi|147920775|ref|YP_685419.1| - 0.062 13.1 0.2 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 PDZ domain Rad51 PF08423.6 gi|147920776|ref|YP_685418.1| - 9.8e-32 109.8 0.1 1.1e-31 109.6 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|147920776|ref|YP_685418.1| - 5.2e-17 61.8 0.0 6.8e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|147920776|ref|YP_685418.1| - 2.9e-13 49.4 0.7 6.3e-13 48.3 0.5 1.6 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|147920776|ref|YP_685418.1| - 1e-10 41.4 0.0 1.2e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) RecA PF00154.16 gi|147920776|ref|YP_685418.1| - 1.5e-10 40.6 0.2 1.8e-10 40.4 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein TrwB_AAD_bind PF10412.4 gi|147920776|ref|YP_685418.1| - 0.00064 18.4 0.0 0.004 15.8 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain Arch_ATPase PF01637.13 gi|147920776|ref|YP_685418.1| - 0.00075 19.2 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|147920776|ref|YP_685418.1| - 0.002 17.6 0.0 0.26 10.6 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain DnaB_C PF03796.10 gi|147920776|ref|YP_685418.1| - 0.004 16.0 0.0 0.29 9.9 0.0 2.2 1 1 0 2 2 2 1 DnaB-like helicase C terminal domain KTI12 PF08433.5 gi|147920776|ref|YP_685418.1| - 0.0055 15.9 0.0 0.0094 15.1 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Isochorismatase PF00857.15 gi|147920776|ref|YP_685418.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Isochorismatase family AAA_18 PF13238.1 gi|147920776|ref|YP_685418.1| - 0.032 14.5 0.0 0.053 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|147920776|ref|YP_685418.1| - 0.036 14.2 0.0 0.062 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|147920776|ref|YP_685418.1| - 0.039 13.8 0.0 0.087 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|147920776|ref|YP_685418.1| - 0.048 13.0 0.0 0.088 12.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.24 gi|147920776|ref|YP_685418.1| - 0.053 13.7 0.0 0.09 12.9 0.0 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|147920776|ref|YP_685418.1| - 0.061 12.8 0.2 0.11 11.9 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|147920776|ref|YP_685418.1| - 0.11 12.2 0.0 0.38 10.4 0.0 2.0 1 1 1 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.1 gi|147920776|ref|YP_685418.1| - 0.12 12.3 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain OmdA PF13376.1 gi|147920777|ref|YP_685417.1| - 1.5e-21 75.7 0.0 3e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated NERD PF08378.6 gi|147920779|ref|YP_685415.1| - 7.1e-15 55.2 0.0 2.3e-14 53.6 0.0 1.9 2 0 0 2 2 2 1 Nuclease-related domain cwf21 PF08312.7 gi|147920779|ref|YP_685415.1| - 1.5 8.7 7.7 1.5 8.7 2.4 2.8 2 1 0 2 2 2 0 cwf21 domain PMT_2 PF13231.1 gi|147920780|ref|YP_685414.1| - 1.6e-18 67.1 40.1 1.2e-12 48.0 12.1 5.0 4 1 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2029 PF09594.5 gi|147920780|ref|YP_685414.1| - 0.34 10.3 82.9 0.0081 15.6 18.5 3.5 1 1 0 3 3 3 0 Protein of unknown function (DUF2029) PMT_2 PF13231.1 gi|147920781|ref|YP_685413.1| - 1.6e-13 50.8 16.6 1.6e-13 50.8 11.5 2.8 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase OMP_b-brl_2 PF13568.1 gi|147920782|ref|YP_685412.1| - 0.046 13.5 1.8 0.052 13.3 1.2 1.1 1 0 0 1 1 1 0 Outer membrane protein beta-barrel domain OMP_b-brl PF13505.1 gi|147920782|ref|YP_685412.1| - 0.41 10.5 7.7 0.64 9.9 5.3 1.5 1 1 0 1 1 1 0 Outer membrane protein beta-barrel domain KRTAP PF11759.3 gi|147920782|ref|YP_685412.1| - 6.5 7.0 22.6 47 4.3 15.6 2.0 1 1 0 1 1 1 0 Keratin-associated matrix DDE_Tnp_1 PF01609.16 gi|147920784|ref|YP_685410.1| - 2.7e-05 23.7 0.1 0.00011 21.8 0.0 1.9 1 1 0 1 1 1 1 Transposase DDE domain AraC_N PF06719.8 gi|147920784|ref|YP_685410.1| - 0.09 12.0 0.1 4.9 6.4 0.0 2.3 2 0 0 2 2 2 0 AraC-type transcriptional regulator N-terminus DUF111 PF01969.12 gi|147920785|ref|YP_685409.1| - 4.7e-86 288.9 0.1 1.5e-78 264.3 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function DUF111 AAA PF00004.24 gi|147920787|ref|YP_685407.1| - 6.6e-98 324.0 0.0 8.5e-50 168.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|147920787|ref|YP_685407.1| - 5.6e-31 106.3 0.0 2.5e-30 104.2 0.1 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|147920787|ref|YP_685407.1| - 2.6e-16 58.9 0.1 2.1e-14 52.8 0.0 2.9 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|147920787|ref|YP_685407.1| - 1.2e-14 54.7 0.0 1.1e-07 31.9 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|147920787|ref|YP_685407.1| - 1.2e-13 50.6 0.0 1e-07 31.2 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|147920787|ref|YP_685407.1| - 3.2e-13 49.9 0.3 8.9e-05 22.6 0.1 4.1 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|147920787|ref|YP_685407.1| - 8.8e-12 45.1 0.0 3.8e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|147920787|ref|YP_685407.1| - 2.1e-11 44.0 0.0 2e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|147920787|ref|YP_685407.1| - 2.2e-11 43.1 0.0 0.00032 19.5 0.0 3.2 3 0 0 3 3 3 2 TIP49 C-terminus AAA_17 PF13207.1 gi|147920787|ref|YP_685407.1| - 3.3e-11 44.0 0.0 7.4e-05 23.5 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|147920787|ref|YP_685407.1| - 1.2e-10 41.2 0.6 0.00013 21.6 0.0 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|147920787|ref|YP_685407.1| - 9.2e-10 38.1 0.7 0.00064 19.4 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|147920787|ref|YP_685407.1| - 6.6e-09 35.7 0.0 0.0032 17.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|147920787|ref|YP_685407.1| - 8.6e-09 34.7 0.0 0.0022 17.1 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|147920787|ref|YP_685407.1| - 2.7e-08 33.4 0.3 0.0082 15.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|147920787|ref|YP_685407.1| - 2.9e-08 33.8 0.0 0.0031 17.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|147920787|ref|YP_685407.1| - 1.1e-07 32.2 0.0 0.0055 17.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|147920787|ref|YP_685407.1| - 5.4e-07 29.2 5.9 0.15 11.4 0.1 4.3 2 2 1 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|147920787|ref|YP_685407.1| - 2.4e-06 26.8 0.5 0.066 12.3 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|147920787|ref|YP_685407.1| - 4e-06 26.9 0.0 0.084 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.11 gi|147920787|ref|YP_685407.1| - 2.4e-05 23.6 0.1 0.23 10.6 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|147920787|ref|YP_685407.1| - 2.6e-05 24.5 0.0 0.06 13.6 0.0 2.6 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.7 gi|147920787|ref|YP_685407.1| - 4.3e-05 23.2 0.1 0.27 10.8 0.0 3.4 4 0 0 4 4 3 2 NACHT domain Arch_ATPase PF01637.13 gi|147920787|ref|YP_685407.1| - 4.5e-05 23.2 0.0 0.14 11.8 0.0 2.9 2 1 0 2 2 2 1 Archaeal ATPase KaiC PF06745.8 gi|147920787|ref|YP_685407.1| - 6e-05 22.2 1.5 0.84 8.7 0.0 3.6 3 1 1 4 4 4 2 KaiC AAA_3 PF07726.6 gi|147920787|ref|YP_685407.1| - 7.1e-05 22.4 0.0 0.11 12.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|147920787|ref|YP_685407.1| - 0.00014 21.4 0.0 0.55 9.6 0.0 3.0 3 0 0 3 3 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|147920787|ref|YP_685407.1| - 0.00014 20.8 0.0 0.11 11.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_24 PF13479.1 gi|147920787|ref|YP_685407.1| - 0.00014 21.5 0.2 0.15 11.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|147920787|ref|YP_685407.1| - 0.00015 20.9 0.0 0.14 11.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) UPF0079 PF02367.12 gi|147920787|ref|YP_685407.1| - 0.00021 20.9 0.3 0.59 9.7 0.0 3.3 2 1 1 3 3 3 1 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activ_2 PF14532.1 gi|147920787|ref|YP_685407.1| - 0.00024 21.1 0.0 0.36 10.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|147920787|ref|YP_685407.1| - 0.00026 20.7 1.0 0.62 9.7 0.0 4.0 3 1 1 4 4 4 1 NTPase AAA_30 PF13604.1 gi|147920787|ref|YP_685407.1| - 0.00031 20.3 0.1 0.5 9.9 0.0 3.2 3 0 0 3 3 3 1 AAA domain DUF815 PF05673.8 gi|147920787|ref|YP_685407.1| - 0.00067 18.6 0.0 0.26 10.1 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Parvo_NS1 PF01057.12 gi|147920787|ref|YP_685407.1| - 0.0013 17.6 0.0 1.2 7.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Cytidylate_kin2 PF13189.1 gi|147920787|ref|YP_685407.1| - 0.002 18.0 0.1 0.038 13.8 0.0 2.6 3 0 0 3 3 2 1 Cytidylate kinase-like family AAA_11 PF13086.1 gi|147920787|ref|YP_685407.1| - 0.0028 17.2 0.0 0.92 9.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|147920787|ref|YP_685407.1| - 0.0051 16.3 0.0 0.67 9.4 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|147920787|ref|YP_685407.1| - 0.007 16.2 0.0 2.2 8.0 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SKI PF01202.17 gi|147920787|ref|YP_685407.1| - 0.013 15.3 0.0 1.5 8.6 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase RRM_DME PF15628.1 gi|147920787|ref|YP_685407.1| - 0.018 14.7 0.0 0.078 12.6 0.0 2.0 1 1 1 2 2 2 0 RRM in Demeter DAP3 PF10236.4 gi|147920787|ref|YP_685407.1| - 0.022 13.6 0.0 1.6 7.5 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AFG1_ATPase PF03969.11 gi|147920787|ref|YP_685407.1| - 0.024 13.4 0.0 4.1 6.1 0.0 2.8 3 0 0 3 3 3 0 AFG1-like ATPase Bac_DnaA PF00308.13 gi|147920787|ref|YP_685407.1| - 0.032 13.8 0.0 8.4 5.9 0.0 2.7 2 1 0 2 2 2 0 Bacterial dnaA protein Guanylate_kin PF00625.16 gi|147920787|ref|YP_685407.1| - 0.046 13.1 0.1 42 3.5 0.0 3.4 2 1 1 3 3 3 0 Guanylate kinase T2SE PF00437.15 gi|147920787|ref|YP_685407.1| - 0.058 12.2 0.0 6.5 5.5 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.6 gi|147920787|ref|YP_685407.1| - 0.082 12.7 0.0 7.4 6.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Vps4_C PF09336.5 gi|147920787|ref|YP_685407.1| - 0.096 12.5 0.1 3.6 7.5 0.0 2.6 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain CPT PF07931.7 gi|147920787|ref|YP_685407.1| - 0.1 12.1 0.0 27 4.3 0.0 2.9 3 0 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein KAP_NTPase PF07693.9 gi|147920787|ref|YP_685407.1| - 0.12 11.3 0.0 4.8 6.0 0.0 2.7 3 0 0 3 3 3 0 KAP family P-loop domain cobW PF02492.14 gi|147920787|ref|YP_685407.1| - 0.14 11.5 0.1 17 4.7 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PRC PF05239.11 gi|147920788|ref|YP_685406.1| - 1.4e-11 44.0 0.1 1.7e-11 43.8 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF1614 PF07758.6 gi|147920789|ref|YP_685405.1| - 1e-36 126.3 10.5 1.4e-36 125.8 7.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) Sec62 PF03839.11 gi|147920789|ref|YP_685405.1| - 0.14 11.5 1.6 0.36 10.2 1.1 1.6 1 0 0 1 1 1 0 Translocation protein Sec62 DUF4131 PF13567.1 gi|147920789|ref|YP_685405.1| - 0.73 9.2 8.8 0.17 11.2 2.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HSP20 PF00011.16 gi|147920790|ref|YP_685404.1| - 4.9e-13 48.8 1.5 1.3e-11 44.2 1.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|147920790|ref|YP_685404.1| - 2e-06 28.2 0.0 3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|147920790|ref|YP_685404.1| - 3.5e-05 23.5 0.0 3.8e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|147920790|ref|YP_685404.1| - 0.018 14.5 0.0 0.024 14.1 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 AAA PF00004.24 gi|147920791|ref|YP_685403.1| - 7.7e-100 330.2 0.5 5.8e-49 165.6 0.0 3.4 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|147920791|ref|YP_685403.1| - 4.1e-30 103.5 0.3 3.1e-29 100.7 0.4 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|147920791|ref|YP_685403.1| - 2.2e-18 66.7 0.2 2.5e-08 34.0 0.0 4.5 5 1 0 5 5 4 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|147920791|ref|YP_685403.1| - 1.8e-15 56.6 0.1 3.6e-08 32.7 0.0 2.9 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|147920791|ref|YP_685403.1| - 5.7e-15 54.6 0.0 1.7e-14 53.1 0.0 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_33 PF13671.1 gi|147920791|ref|YP_685403.1| - 5.2e-13 49.0 0.0 1.5e-05 24.9 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|147920791|ref|YP_685403.1| - 6.3e-13 49.1 0.0 4.6e-05 23.4 0.0 4.0 2 1 2 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|147920791|ref|YP_685403.1| - 2.1e-12 47.9 0.2 2.6e-05 25.0 0.0 3.3 3 2 0 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|147920791|ref|YP_685403.1| - 5.4e-12 45.7 0.0 9.3e-05 22.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|147920791|ref|YP_685403.1| - 6.2e-12 45.7 3.9 0.00023 21.3 0.0 5.3 4 2 0 4 4 3 2 AAA domain Zeta_toxin PF06414.7 gi|147920791|ref|YP_685403.1| - 4.7e-11 42.1 0.6 0.00023 20.3 0.0 3.4 3 0 0 3 3 3 2 Zeta toxin TIP49 PF06068.8 gi|147920791|ref|YP_685403.1| - 9.5e-11 41.0 0.1 0.0004 19.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_5 PF07728.9 gi|147920791|ref|YP_685403.1| - 1.6e-09 37.6 5.2 0.00097 18.8 0.1 4.9 4 2 0 4 4 3 2 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|147920791|ref|YP_685403.1| - 5.7e-08 32.3 0.1 0.011 15.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|147920791|ref|YP_685403.1| - 9e-08 31.5 0.2 0.013 14.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|147920791|ref|YP_685403.1| - 2.2e-07 31.0 0.0 0.018 14.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|147920791|ref|YP_685403.1| - 2.4e-07 31.1 0.0 0.0065 16.7 0.0 3.1 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|147920791|ref|YP_685403.1| - 8.1e-07 28.7 0.0 0.015 14.8 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|147920791|ref|YP_685403.1| - 8.4e-07 28.6 0.4 0.15 11.5 0.0 4.1 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|147920791|ref|YP_685403.1| - 9.2e-07 28.5 3.8 0.021 14.5 0.1 3.2 3 0 0 3 3 3 2 Part of AAA domain Arch_ATPase PF01637.13 gi|147920791|ref|YP_685403.1| - 1.3e-06 28.3 1.9 0.17 11.5 0.0 4.6 3 2 1 4 4 4 1 Archaeal ATPase RNA_helicase PF00910.17 gi|147920791|ref|YP_685403.1| - 1.6e-06 28.2 0.0 0.099 12.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.22 gi|147920791|ref|YP_685403.1| - 7.5e-06 26.2 0.9 0.15 12.3 0.0 3.4 4 0 0 4 4 2 2 ABC transporter Vps4_C PF09336.5 gi|147920791|ref|YP_685403.1| - 1.7e-05 24.6 0.2 0.0023 17.7 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.8 gi|147920791|ref|YP_685403.1| - 1.8e-05 23.8 0.0 0.13 11.1 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.11 gi|147920791|ref|YP_685403.1| - 6e-05 22.3 2.2 0.13 11.4 0.0 3.1 4 0 0 4 4 2 2 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|147920791|ref|YP_685403.1| - 7.9e-05 22.7 0.0 0.39 10.7 0.0 2.9 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|147920791|ref|YP_685403.1| - 8.6e-05 22.0 7.2 0.51 9.7 0.1 4.2 2 2 1 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|147920791|ref|YP_685403.1| - 0.00014 21.5 0.0 0.64 9.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|147920791|ref|YP_685403.1| - 0.00022 20.9 2.3 0.51 9.8 0.0 3.1 2 2 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|147920791|ref|YP_685403.1| - 0.00036 19.4 0.1 0.62 8.8 0.0 2.7 3 0 0 3 3 3 2 Parvovirus non-structural protein NS1 NACHT PF05729.7 gi|147920791|ref|YP_685403.1| - 0.00042 20.0 0.1 2.1 7.9 0.0 3.7 4 0 0 4 4 4 1 NACHT domain ATP-synt_ab PF00006.20 gi|147920791|ref|YP_685403.1| - 0.00048 19.6 0.0 1.1 8.7 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|147920791|ref|YP_685403.1| - 0.0007 18.5 0.0 1.4 7.7 0.0 2.8 2 0 0 2 2 2 2 NB-ARC domain NTPase_1 PF03266.10 gi|147920791|ref|YP_685403.1| - 0.00077 19.2 2.2 4.1 7.0 0.0 4.3 2 2 2 4 4 4 0 NTPase SKI PF01202.17 gi|147920791|ref|YP_685403.1| - 0.0016 18.3 0.0 2 8.2 0.0 3.2 2 0 0 2 2 2 1 Shikimate kinase AAA_30 PF13604.1 gi|147920791|ref|YP_685403.1| - 0.0022 17.6 0.0 2.3 7.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|147920791|ref|YP_685403.1| - 0.0029 16.6 4.2 2.5 6.9 0.0 3.8 4 0 0 4 4 4 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|147920791|ref|YP_685403.1| - 0.0038 16.9 0.0 3.6 7.1 0.0 2.8 2 1 0 2 2 2 0 Bacterial dnaA protein AFG1_ATPase PF03969.11 gi|147920791|ref|YP_685403.1| - 0.0044 15.8 0.0 2.6 6.7 0.0 2.7 3 0 0 3 3 2 1 AFG1-like ATPase KAP_NTPase PF07693.9 gi|147920791|ref|YP_685403.1| - 0.0046 15.9 0.0 0.3 10.0 0.0 2.9 3 0 0 3 3 3 1 KAP family P-loop domain UPF0079 PF02367.12 gi|147920791|ref|YP_685403.1| - 0.0053 16.3 0.0 2.4 7.7 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|147920791|ref|YP_685403.1| - 0.0058 15.7 5.7 2.3 7.2 0.1 4.2 3 1 1 4 4 4 1 KaiC Cytidylate_kin2 PF13189.1 gi|147920791|ref|YP_685403.1| - 0.015 15.2 0.3 1.2 9.0 0.0 3.1 3 0 0 3 3 2 0 Cytidylate kinase-like family DUF234 PF03008.9 gi|147920791|ref|YP_685403.1| - 0.015 15.3 0.0 9.5 6.4 0.0 3.1 2 0 0 2 2 2 0 Archaea bacterial proteins of unknown function KTI12 PF08433.5 gi|147920791|ref|YP_685403.1| - 0.02 14.1 0.5 4 6.5 0.0 3.1 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|147920791|ref|YP_685403.1| - 0.025 14.1 0.0 0.62 9.5 0.0 2.7 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase IPT PF01745.11 gi|147920791|ref|YP_685403.1| - 0.055 12.6 0.8 6.2 5.9 0.0 3.0 3 0 0 3 3 3 0 Isopentenyl transferase PduV-EutP PF10662.4 gi|147920791|ref|YP_685403.1| - 0.074 12.5 0.0 4 6.9 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|147920791|ref|YP_685403.1| - 0.14 12.4 7.2 6.6 6.9 0.0 3.6 3 0 0 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|147920791|ref|YP_685403.1| - 3 7.2 9.9 14 5.0 0.0 4.2 3 1 0 3 3 3 0 AAA-like domain HTH_5 PF01022.15 gi|147920792|ref|YP_685402.1| - 7.1e-24 83.2 1.0 3e-15 55.6 0.1 2.8 3 0 0 3 3 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|147920792|ref|YP_685402.1| - 1.1e-15 57.0 0.5 4.9e-07 29.3 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|147920792|ref|YP_685402.1| - 9e-15 54.2 0.1 3e-11 42.9 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|147920792|ref|YP_685402.1| - 2.1e-12 46.5 0.1 6.4e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|147920792|ref|YP_685402.1| - 3.2e-11 42.4 0.3 9.5e-05 21.7 0.1 2.8 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|147920792|ref|YP_685402.1| - 4.7e-10 39.0 0.0 8.2e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.15 gi|147920792|ref|YP_685402.1| - 3e-09 36.8 0.0 0.0036 17.3 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator HTH_27 PF13463.1 gi|147920792|ref|YP_685402.1| - 5.3e-09 36.2 0.1 0.00048 20.4 0.0 2.6 2 0 0 2 2 2 2 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|147920792|ref|YP_685402.1| - 7.7e-08 32.1 0.7 0.0061 16.4 0.0 2.7 3 0 0 3 3 2 2 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.5 gi|147920792|ref|YP_685402.1| - 1.4e-07 31.0 0.0 0.0026 17.4 0.0 3.2 3 0 0 3 3 3 2 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|147920792|ref|YP_685402.1| - 5.1e-07 29.2 0.0 0.00012 21.6 0.0 2.5 2 0 0 2 2 2 1 HTH domain DUF2250 PF10007.4 gi|147920792|ref|YP_685402.1| - 5.6e-07 29.3 0.1 0.019 14.8 0.0 2.5 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|147920792|ref|YP_685402.1| - 2.3e-06 27.0 1.1 0.0011 18.4 0.0 2.8 2 1 1 3 3 3 1 TFIIE alpha subunit LexA_DNA_bind PF01726.11 gi|147920792|ref|YP_685402.1| - 9.2e-06 25.1 0.0 0.053 13.0 0.0 2.5 2 0 0 2 2 2 2 LexA DNA binding domain PadR PF03551.9 gi|147920792|ref|YP_685402.1| - 5.7e-05 22.8 0.4 0.00078 19.1 0.1 2.7 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|147920792|ref|YP_685402.1| - 7.4e-05 22.6 0.0 0.015 15.2 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|147920792|ref|YP_685402.1| - 7.7e-05 22.2 0.6 0.51 10.0 0.0 2.9 3 0 0 3 3 3 2 HxlR-like helix-turn-helix GntR PF00392.16 gi|147920792|ref|YP_685402.1| - 8e-05 21.9 0.0 0.29 10.6 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_9 PF08221.6 gi|147920792|ref|YP_685402.1| - 0.00016 21.4 0.0 0.032 14.0 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain GerE PF00196.14 gi|147920792|ref|YP_685402.1| - 0.00023 20.3 0.0 0.052 12.8 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family DUF742 PF05331.6 gi|147920792|ref|YP_685402.1| - 0.00031 20.3 0.0 0.016 14.8 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF742) Sigma70_r4 PF04545.11 gi|147920792|ref|YP_685402.1| - 0.00051 19.2 0.7 0.45 9.8 0.0 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|147920792|ref|YP_685402.1| - 0.00053 19.3 0.1 0.33 10.4 0.0 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 DUF4423 PF14394.1 gi|147920792|ref|YP_685402.1| - 0.00076 19.0 0.1 0.61 9.6 0.0 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|147920792|ref|YP_685402.1| - 0.00087 18.8 0.0 1.5 8.5 0.0 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|147920792|ref|YP_685402.1| - 0.00093 18.7 0.0 0.019 14.5 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|147920792|ref|YP_685402.1| - 0.0011 18.7 0.1 2.3 8.0 0.0 2.9 2 1 1 3 3 3 1 Crp-like helix-turn-helix domain IF2_N PF04760.10 gi|147920792|ref|YP_685402.1| - 0.0019 17.7 0.3 0.045 13.4 0.0 2.5 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region EAP30 PF04157.11 gi|147920792|ref|YP_685402.1| - 0.002 17.3 0.1 0.14 11.2 0.0 2.4 2 1 0 2 2 2 1 EAP30/Vps36 family HTH_DeoR PF08220.7 gi|147920792|ref|YP_685402.1| - 0.0027 17.2 0.0 0.6 9.6 0.0 2.4 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|147920792|ref|YP_685402.1| - 0.0044 17.1 0.0 1.6 8.8 0.0 2.6 2 0 0 2 2 2 1 Penicillinase repressor HTH_36 PF13730.1 gi|147920792|ref|YP_685402.1| - 0.0056 16.7 0.0 0.11 12.6 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|147920792|ref|YP_685402.1| - 0.0066 15.9 0.0 2.1 7.9 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain FUR PF01475.14 gi|147920792|ref|YP_685402.1| - 0.011 15.6 0.1 0.022 14.6 0.0 1.6 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_28 PF13518.1 gi|147920792|ref|YP_685402.1| - 0.017 15.1 0.0 0.2 11.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|147920792|ref|YP_685402.1| - 0.017 15.0 0.0 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein RPA_C PF08784.6 gi|147920792|ref|YP_685402.1| - 0.019 15.3 0.4 6.4 7.2 0.1 2.9 2 1 0 2 2 2 0 Replication protein A C terminal HTH_AsnC-type PF13404.1 gi|147920792|ref|YP_685402.1| - 0.022 14.3 0.0 3.1 7.4 0.0 2.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Cdc6_C PF09079.6 gi|147920792|ref|YP_685402.1| - 0.026 14.2 0.2 0.19 11.5 0.0 2.3 2 0 0 2 2 2 0 CDC6, C terminal HTH_40 PF14493.1 gi|147920792|ref|YP_685402.1| - 0.034 14.3 0.8 2.9 8.1 0.1 2.9 2 2 1 3 3 2 0 Helix-turn-helix domain DUF2513 PF10711.4 gi|147920792|ref|YP_685402.1| - 0.039 14.0 0.0 0.089 12.8 0.0 1.7 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) FaeA PF04703.7 gi|147920792|ref|YP_685402.1| - 0.041 14.0 0.1 7.7 6.7 0.0 2.4 2 0 0 2 2 2 0 FaeA-like protein HTH_45 PF14947.1 gi|147920792|ref|YP_685402.1| - 0.062 13.1 0.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix PaaX PF07848.7 gi|147920792|ref|YP_685402.1| - 0.088 12.8 0.0 0.66 10.0 0.0 2.1 2 0 0 2 2 2 0 PaaX-like protein UPF0122 PF04297.9 gi|147920792|ref|YP_685402.1| - 0.092 12.7 0.4 1.5 8.9 0.1 2.6 2 1 1 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like Phage_rep_org_N PF09681.5 gi|147920792|ref|YP_685402.1| - 0.1 12.1 0.0 14 5.2 0.0 2.7 2 1 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF1495 PF07381.6 gi|147920792|ref|YP_685402.1| - 0.1 12.2 0.9 6.9 6.4 0.1 3.4 2 2 2 4 4 3 0 Winged helix DNA-binding domain (DUF1495) B-block_TFIIIC PF04182.7 gi|147920792|ref|YP_685402.1| - 0.12 12.1 0.0 0.37 10.6 0.0 1.7 2 0 0 2 2 1 0 B-block binding subunit of TFIIIC IMPDH PF00478.20 gi|147920793|ref|YP_685401.1| - 3.2e-137 457.1 7.8 3.7e-137 456.9 5.4 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|147920793|ref|YP_685401.1| - 3.7e-29 100.2 3.1 4.3e-14 52.0 0.4 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|147920793|ref|YP_685401.1| - 1.3e-10 40.9 8.0 0.00013 21.2 0.0 2.5 2 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|147920793|ref|YP_685401.1| - 6.9e-10 38.2 2.6 2e-08 33.4 2.0 2.3 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|147920793|ref|YP_685401.1| - 2.9e-05 23.1 5.6 5.4e-05 22.2 3.9 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|147920793|ref|YP_685401.1| - 0.0029 16.8 3.9 0.0067 15.7 2.6 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|147920793|ref|YP_685401.1| - 0.0035 16.4 1.2 0.0035 16.4 0.8 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|147920793|ref|YP_685401.1| - 0.04 12.8 1.5 0.099 11.5 1.1 1.6 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|147920793|ref|YP_685401.1| - 1.8 7.7 11.1 0.83 8.8 0.4 3.6 3 1 1 4 4 4 0 PcrB family DUF556 PF04476.8 gi|147920794|ref|YP_685400.1| - 8.3e-94 313.2 3.5 9.2e-94 313.0 2.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF556) Hydrolase_like PF13242.1 gi|147920794|ref|YP_685400.1| - 0.13 11.9 0.7 0.37 10.5 0.0 2.2 2 1 0 2 2 2 0 HAD-hyrolase-like DsbD PF02683.10 gi|147920796|ref|YP_001218860.1| - 8.9e-15 54.8 15.1 1.4e-14 54.2 10.4 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_3 PF13192.1 gi|147920796|ref|YP_001218860.1| - 0.12 12.2 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin domain His_biosynth PF00977.16 gi|147920797|ref|YP_685397.1| - 1.3e-31 109.7 0.4 1.4e-31 109.5 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|147920797|ref|YP_685397.1| - 1.5e-05 23.7 0.4 0.03 12.8 0.1 2.3 2 0 0 2 2 2 2 Tryptophan synthase alpha chain PcrB PF01884.12 gi|147920797|ref|YP_685397.1| - 0.0049 16.1 1.6 0.31 10.2 0.3 2.1 2 0 0 2 2 2 2 PcrB family PRAI PF00697.17 gi|147920797|ref|YP_685397.1| - 0.0094 15.5 0.1 0.019 14.5 0.1 1.5 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BtpA PF03437.10 gi|147920797|ref|YP_685397.1| - 0.013 14.7 0.3 0.16 11.2 0.0 1.9 1 1 1 2 2 2 0 BtpA family ThiG PF05690.9 gi|147920797|ref|YP_685397.1| - 0.11 11.5 5.0 0.19 10.7 1.4 2.0 1 1 1 2 2 2 0 Thiazole biosynthesis protein ThiG DHH PF01368.15 gi|147920798|ref|YP_685396.1| - 1.7e-14 53.6 0.1 3.4e-14 52.7 0.1 1.5 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|147920798|ref|YP_685396.1| - 7.7e-12 44.7 3.5 2e-11 43.4 2.5 1.7 1 0 0 1 1 1 1 DHHA1 domain NYN PF01936.13 gi|147920799|ref|YP_685395.1| - 4.9e-25 88.5 0.1 6.6e-25 88.1 0.1 1.1 1 0 0 1 1 1 1 NYN domain HMGL-like PF00682.14 gi|147920800|ref|YP_685394.1| - 4.4e-67 226.2 3.8 9.6e-67 225.0 2.6 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|147920800|ref|YP_685394.1| - 3e-33 114.4 2.2 6.2e-33 113.4 1.5 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain HTH_45 PF14947.1 gi|147920801|ref|YP_685393.1| - 1.2e-10 41.0 0.2 2.1e-10 40.2 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.12 gi|147920801|ref|YP_685393.1| - 1.7e-05 24.3 0.0 2.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|147920801|ref|YP_685393.1| - 4.2e-05 23.1 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|147920801|ref|YP_685393.1| - 0.00017 21.8 0.0 0.0003 21.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|147920801|ref|YP_685393.1| - 0.0029 17.6 0.1 0.0042 17.1 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|147920801|ref|YP_685393.1| - 0.0068 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147920801|ref|YP_685393.1| - 0.0073 15.9 0.3 0.026 14.2 0.0 2.1 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|147920801|ref|YP_685393.1| - 0.063 12.6 0.0 0.15 11.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|147920801|ref|YP_685393.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain Reprolysin_5 PF13688.1 gi|147920803|ref|YP_685391.1| - 5.8e-06 26.3 0.0 7.6e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M10 PF00413.19 gi|147920803|ref|YP_685391.1| - 1.6e-05 24.6 0.1 1.8e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|147920803|ref|YP_685391.1| - 0.00034 20.7 0.0 0.00047 20.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|147920803|ref|YP_685391.1| - 0.00078 19.9 0.1 0.0019 18.7 0.0 1.8 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|147920803|ref|YP_685391.1| - 0.0013 18.2 0.0 0.0017 17.9 0.0 1.4 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF955 PF06114.8 gi|147920803|ref|YP_685391.1| - 0.0018 17.9 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) Peptidase_M43 PF05572.8 gi|147920803|ref|YP_685391.1| - 0.006 16.1 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Peptidase_M54 PF07998.6 gi|147920803|ref|YP_685391.1| - 0.014 15.1 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin PF01421.14 gi|147920803|ref|YP_685391.1| - 0.036 13.6 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease OST-HTH PF12872.2 gi|147920803|ref|YP_685391.1| - 0.074 12.8 0.0 2.9 7.7 0.0 2.2 2 0 0 2 2 2 0 OST-HTH/LOTUS domain ABC_tran PF00005.22 gi|147920804|ref|YP_685390.1| - 2.6e-34 118.4 0.0 4.1e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920804|ref|YP_685390.1| - 9.6e-14 52.0 0.0 5.4e-07 29.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147920804|ref|YP_685390.1| - 6.3e-06 25.5 0.2 0.0025 17.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|147920804|ref|YP_685390.1| - 4.7e-05 22.9 0.0 0.0093 15.4 0.0 2.2 2 1 0 2 2 2 1 AAA-like domain AAA_15 PF13175.1 gi|147920804|ref|YP_685390.1| - 9e-05 21.6 0.0 0.076 12.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|147920804|ref|YP_685390.1| - 0.00023 21.1 0.1 0.00042 20.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|147920804|ref|YP_685390.1| - 0.00027 20.1 0.0 0.00041 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|147920804|ref|YP_685390.1| - 0.00043 19.7 0.0 0.0011 18.4 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|147920804|ref|YP_685390.1| - 0.00072 19.4 0.2 0.0058 16.5 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|147920804|ref|YP_685390.1| - 0.0018 18.4 0.1 0.012 15.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|147920804|ref|YP_685390.1| - 0.0025 18.1 0.0 0.005 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|147920804|ref|YP_685390.1| - 0.0038 16.6 0.0 0.43 9.9 0.0 2.8 3 0 0 3 3 3 1 AAA domain ArgK PF03308.11 gi|147920804|ref|YP_685390.1| - 0.0046 15.7 0.2 0.026 13.3 0.0 1.9 1 1 1 2 2 2 1 ArgK protein AAA_19 PF13245.1 gi|147920804|ref|YP_685390.1| - 0.025 14.3 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|147920804|ref|YP_685390.1| - 0.032 13.7 0.0 0.078 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|147920804|ref|YP_685390.1| - 0.047 13.1 0.1 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 MutS domain V AAA_28 PF13521.1 gi|147920804|ref|YP_685390.1| - 0.052 13.5 0.0 0.081 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|147920804|ref|YP_685390.1| - 0.06 13.1 0.0 0.32 10.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|147920804|ref|YP_685390.1| - 0.063 12.9 0.0 0.1 12.2 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|147920804|ref|YP_685390.1| - 0.066 14.0 0.3 0.14 12.9 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|147920804|ref|YP_685390.1| - 0.086 12.7 0.1 0.23 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|147920804|ref|YP_685390.1| - 0.089 12.3 0.0 0.44 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|147920804|ref|YP_685390.1| - 0.096 11.3 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MMR_HSR1 PF01926.18 gi|147920804|ref|YP_685390.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|147920804|ref|YP_685390.1| - 0.11 12.3 0.0 0.8 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|147920804|ref|YP_685390.1| - 0.13 11.1 0.0 0.21 10.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|147920804|ref|YP_685390.1| - 0.13 12.5 0.0 0.39 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|147920804|ref|YP_685390.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|147920804|ref|YP_685390.1| - 0.15 11.7 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|147920804|ref|YP_685390.1| - 0.21 10.0 0.0 4.5 5.6 0.0 2.1 1 1 1 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|147920805|ref|YP_685389.1| - 8.8e-16 57.9 15.5 1.3e-15 57.3 10.8 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MoeA_N PF03453.12 gi|147920807|ref|YP_685387.1| - 1.7e-49 167.2 0.2 3.9e-49 166.1 0.0 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|147920807|ref|YP_685387.1| - 1.9e-27 95.4 0.1 3e-27 94.7 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|147920807|ref|YP_685387.1| - 3.8e-17 62.0 3.6 3.9e-17 61.9 0.0 2.7 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) PBP_like PF12727.2 gi|147920808|ref|YP_685386.1| - 1.7e-58 196.8 0.1 3.5e-58 195.7 0.0 1.6 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|147920808|ref|YP_685386.1| - 1e-52 177.7 1.1 1.9e-52 176.8 0.8 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|147920808|ref|YP_685386.1| - 2.3e-27 95.1 0.0 4.8e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|147920808|ref|YP_685386.1| - 2.8e-14 52.8 0.5 1.4e-13 50.5 0.0 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|147920808|ref|YP_685386.1| - 2.2e-06 27.4 0.0 5.4e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|147920808|ref|YP_685386.1| - 0.0004 19.8 0.0 0.00071 19.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Keratin PF02422.11 gi|147920808|ref|YP_685386.1| - 0.048 13.6 0.1 0.14 12.1 0.0 1.8 1 0 0 1 1 1 0 Keratin LysR_substrate PF03466.15 gi|147920808|ref|YP_685386.1| - 0.088 11.8 0.0 0.85 8.6 0.0 2.6 2 1 0 2 2 2 0 LysR substrate binding domain DUF3753 PF12575.3 gi|147920809|ref|YP_685385.1| - 0.11 12.3 0.4 13 5.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) OppC_N PF12911.2 gi|147920809|ref|YP_685385.1| - 0.12 11.8 2.8 0.37 10.1 0.1 2.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Big_3_4 PF13754.1 gi|147920810|ref|YP_685384.1| - 1.7e-21 76.2 117.0 2.2e-06 27.8 6.0 12.0 10 2 1 11 11 11 7 Bacterial Ig-like domain (group 3) Fn3_assoc PF13287.1 gi|147920810|ref|YP_685384.1| - 5.4e-09 36.0 13.2 6.3e-05 22.9 2.0 4.8 4 0 0 4 4 4 2 Fn3 associated SWM_repeat PF13753.1 gi|147920810|ref|YP_685384.1| - 6.9e-06 25.3 83.8 0.0088 15.1 9.4 6.9 2 1 3 5 5 5 4 Putative flagellar system-associated repeat HYR PF02494.11 gi|147920810|ref|YP_685384.1| - 0.021 14.8 23.3 3.5 7.6 0.1 7.7 7 2 1 8 8 8 0 HYR domain DUF2404 PF10296.4 gi|147920810|ref|YP_685384.1| - 0.036 14.1 0.0 1.9 8.6 0.0 3.1 3 0 0 3 3 3 0 Putative integral membrane protein conserved region (DUF2404) Big_3_2 PF12245.3 gi|147920810|ref|YP_685384.1| - 0.05 13.1 22.3 12 5.5 0.1 8.0 8 0 0 8 8 8 0 Bacterial Ig-like domain (group 3) DUF4366 PF14283.1 gi|147920811|ref|YP_685383.1| - 0.0028 17.1 1.6 0.032 13.6 0.0 2.9 2 1 2 4 4 4 1 Domain of unknown function (DUF4366) ETRAMP PF09716.5 gi|147920811|ref|YP_685383.1| - 0.15 11.9 1.0 4.8 7.1 0.8 2.2 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Peptidase_M50B PF13398.1 gi|147920812|ref|YP_685382.1| - 1e-06 28.3 6.4 1e-06 28.3 4.4 1.9 1 1 1 2 2 2 1 Peptidase M50B-like Peptidase_M50 PF02163.17 gi|147920812|ref|YP_685382.1| - 0.00075 18.5 1.9 0.001 18.0 0.7 1.7 1 1 1 2 2 2 1 Peptidase family M50 S1FA PF04689.8 gi|147920812|ref|YP_685382.1| - 0.23 11.3 1.5 9.4 6.1 0.5 2.3 2 0 0 2 2 2 0 DNA binding protein S1FA CheW PF01584.14 gi|147920813|ref|YP_685381.1| - 8.3e-38 128.9 3.1 1e-37 128.6 2.1 1.0 1 0 0 1 1 1 1 CheW-like domain 7kD_DNA_binding PF02294.13 gi|147920813|ref|YP_685381.1| - 0.041 13.5 0.0 0.077 12.6 0.0 1.5 1 0 0 1 1 1 0 7kD DNA-binding domain SMP_2 PF10144.4 gi|147920813|ref|YP_685381.1| - 0.049 12.7 0.1 0.073 12.1 0.1 1.3 1 1 0 1 1 1 0 Bacterial virulence factor haemolysin AAA_24 PF13479.1 gi|147920813|ref|YP_685381.1| - 0.054 13.0 0.0 0.08 12.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF883 PF05957.8 gi|147920814|ref|YP_685380.1| - 0.026 14.9 1.1 0.06 13.7 0.8 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DivIC PF04977.10 gi|147920814|ref|YP_685380.1| - 0.042 13.3 0.2 0.57 9.7 0.0 2.2 2 0 0 2 2 2 0 Septum formation initiator MFS_1 PF07690.11 gi|147920815|ref|YP_685379.1| - 5.4e-52 176.6 44.9 7.8e-31 107.0 13.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147920815|ref|YP_685379.1| - 5e-15 55.0 34.3 1.2e-09 37.2 6.3 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|147920815|ref|YP_685379.1| - 2.5e-07 29.2 18.8 3.2e-07 28.8 13.0 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|147920815|ref|YP_685379.1| - 9.9e-05 22.0 2.6 0.037 13.8 0.1 2.9 2 0 0 2 2 2 2 MFS_1 like family DUF4293 PF14126.1 gi|147920815|ref|YP_685379.1| - 0.27 11.1 4.1 0.77 9.6 2.8 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) Fe-S_biosyn PF01521.15 gi|147920816|ref|YP_685378.1| - 2.4e-10 40.3 0.0 2.6e-10 40.2 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis P12 PF12669.2 gi|147920816|ref|YP_685378.1| - 0.42 10.8 3.1 0.54 10.5 1.1 1.8 2 0 0 2 2 2 0 Virus attachment protein p12 family Abhydrolase_3 PF07859.8 gi|147920817|ref|YP_685377.1| - 2.4e-72 242.9 0.2 3.1e-72 242.5 0.1 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|147920817|ref|YP_685377.1| - 8.8e-06 25.5 0.6 4.5e-05 23.2 0.3 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF2424 PF10340.4 gi|147920817|ref|YP_685377.1| - 4e-05 22.4 0.0 5.6e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Esterase_phd PF10503.4 gi|147920817|ref|YP_685377.1| - 0.0049 16.1 0.0 0.035 13.3 0.0 2.0 2 0 0 2 2 2 1 Esterase PHB depolymerase Peptidase_S9 PF00326.16 gi|147920817|ref|YP_685377.1| - 0.0054 15.9 0.2 0.0081 15.3 0.1 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.7 gi|147920817|ref|YP_685377.1| - 0.011 14.2 0.0 1.4 7.3 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DUF2974 PF11187.3 gi|147920817|ref|YP_685377.1| - 0.019 14.3 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) COesterase PF00135.23 gi|147920817|ref|YP_685377.1| - 0.094 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Carboxylesterase family Gln-synt_C PF00120.19 gi|147920818|ref|YP_685376.1| - 3.8e-99 331.0 0.0 4.7e-99 330.7 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|147920818|ref|YP_685376.1| - 1.7e-28 98.0 0.1 3.1e-28 97.1 0.1 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DDE_Tnp_1 PF01609.16 gi|147920819|ref|YP_687311.1| - 1.6e-16 60.4 0.1 2.5e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147920819|ref|YP_687311.1| - 7e-13 48.2 0.1 2e-12 46.8 0.1 1.8 1 1 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147920819|ref|YP_687311.1| - 3.8e-05 23.4 0.0 7.5e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147920819|ref|YP_687311.1| - 0.022 14.7 0.5 0.043 13.8 0.3 1.5 1 0 0 1 1 1 0 Transposase DDE domain DUF1415 PF07209.7 gi|147920820|ref|YP_685374.1| - 0.041 13.6 0.4 0.054 13.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1415) BLOC1_2 PF10046.4 gi|147920820|ref|YP_685374.1| - 0.1 12.7 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0370 PF13980.1 gi|147920822|ref|YP_685372.1| - 0.14 11.9 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0370) CoxIIa PF08113.6 gi|147920823|ref|YP_685371.1| - 0.1 12.3 0.3 0.19 11.4 0.2 1.5 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IIa family Telethonin PF09470.5 gi|147920824|ref|YP_685370.1| - 0.15 11.5 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Telethonin protein T2SF PF00482.18 gi|147920826|ref|YP_685368.1| - 6.2e-11 42.2 4.4 1.4e-10 41.1 3.0 1.7 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F MASE2 PF05230.6 gi|147920826|ref|YP_685368.1| - 0.13 12.2 0.1 0.13 12.2 0.1 2.8 3 1 0 3 3 3 0 MASE2 domain HAMP PF00672.20 gi|147920826|ref|YP_685368.1| - 2 8.6 7.0 13 6.0 0.1 3.3 3 0 0 3 3 3 0 HAMP domain T2SF PF00482.18 gi|147920827|ref|YP_685367.1| - 0.0072 16.2 3.0 0.0072 16.2 2.1 1.7 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF389 PF04087.9 gi|147920827|ref|YP_685367.1| - 2.2 8.2 14.3 0.23 11.3 5.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF389) T2SE PF00437.15 gi|147920828|ref|YP_685366.1| - 1.3e-40 139.0 0.0 2e-40 138.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|147920828|ref|YP_685366.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain HTH_32 PF13565.1 gi|147920828|ref|YP_685366.1| - 0.58 10.9 6.4 24 5.8 0.1 3.9 2 2 1 3 3 3 0 Homeodomain-like domain GCHY-1 PF02649.9 gi|147920830|ref|YP_685364.1| - 1.7e-93 312.8 0.4 1.9e-93 312.7 0.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DHBP_synthase PF00926.14 gi|147920831|ref|YP_685363.1| - 7.5e-66 221.0 0.0 8.7e-66 220.8 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Ish1 PF10281.4 gi|147920831|ref|YP_685363.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein ETC_C1_NDUFA4 PF04800.7 gi|147920831|ref|YP_685363.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 ETC complex I subunit conserved region CTP-dep_RFKase PF01982.11 gi|147920832|ref|YP_685362.1| - 1.5e-43 147.2 0.0 2.3e-43 146.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.1 gi|147920832|ref|YP_685362.1| - 1.1e-05 24.7 0.0 1.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147920832|ref|YP_685362.1| - 0.00012 21.6 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147920832|ref|YP_685362.1| - 0.0011 18.5 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|147920832|ref|YP_685362.1| - 0.0019 17.9 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|147920832|ref|YP_685362.1| - 0.0035 17.6 0.1 0.0054 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|147920832|ref|YP_685362.1| - 0.0044 16.7 0.0 0.0077 15.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|147920832|ref|YP_685362.1| - 0.0054 16.2 0.0 0.11 12.0 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_12 PF08461.5 gi|147920832|ref|YP_685362.1| - 0.014 15.1 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Antitoxin-MazE PF04014.13 gi|147920832|ref|YP_685362.1| - 0.018 14.7 0.2 0.045 13.4 0.1 1.7 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DDRGK PF09756.4 gi|147920832|ref|YP_685362.1| - 0.049 13.0 0.0 0.066 12.6 0.0 1.1 1 0 0 1 1 1 0 DDRGK domain Rrf2 PF02082.15 gi|147920832|ref|YP_685362.1| - 0.052 13.6 0.0 0.085 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|147920832|ref|YP_685362.1| - 0.068 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|147920832|ref|YP_685362.1| - 0.069 13.1 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|147920832|ref|YP_685362.1| - 0.071 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_AsnC-type PF13404.1 gi|147920832|ref|YP_685362.1| - 0.078 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain 2-ph_phosp PF04029.9 gi|147920833|ref|YP_685360.1| - 1.5e-55 187.7 0.0 1.7e-55 187.5 0.0 1.0 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase Methyltransf_23 PF13489.1 gi|147920835|ref|YP_685358.1| - 7e-12 45.3 0.0 8.6e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920835|ref|YP_685358.1| - 8.7e-12 44.8 0.0 1.4e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147920835|ref|YP_685358.1| - 2.5e-11 43.9 0.0 4e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920835|ref|YP_685358.1| - 2.5e-11 44.1 0.0 4e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920835|ref|YP_685358.1| - 1.8e-09 37.8 0.0 3e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920835|ref|YP_685358.1| - 6e-09 36.2 0.0 2.3e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920835|ref|YP_685358.1| - 5.4e-07 28.9 0.0 7.8e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|147920835|ref|YP_685358.1| - 7.3e-07 29.2 0.1 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|147920835|ref|YP_685358.1| - 7.5e-06 25.1 0.0 9.9e-06 24.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|147920835|ref|YP_685358.1| - 0.00022 20.6 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|147920835|ref|YP_685358.1| - 0.00069 18.7 0.0 0.00078 18.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|147920835|ref|YP_685358.1| - 0.002 16.8 0.0 0.003 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|147920835|ref|YP_685358.1| - 0.0022 17.5 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|147920835|ref|YP_685358.1| - 0.0049 16.8 0.0 0.0068 16.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_32 PF13679.1 gi|147920835|ref|YP_685358.1| - 0.015 15.0 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TPMT PF05724.6 gi|147920835|ref|YP_685358.1| - 0.016 14.6 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|147920835|ref|YP_685358.1| - 0.085 12.2 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Ribosomal_S27 PF01599.14 gi|147920837|ref|YP_685356.1| - 3e-19 68.5 5.0 3.3e-19 68.4 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|147920837|ref|YP_685356.1| - 0.0011 18.7 1.0 0.0012 18.5 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|147920837|ref|YP_685356.1| - 0.0024 17.4 1.4 0.0024 17.4 0.9 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Ribosomal_L37e PF01907.14 gi|147920837|ref|YP_685356.1| - 0.003 17.3 3.8 0.0037 17.0 2.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e GCC2_GCC3 PF07699.8 gi|147920837|ref|YP_685356.1| - 0.0056 16.2 2.4 0.0061 16.1 1.7 1.1 1 0 0 1 1 1 1 GCC2 and GCC3 DNA_RNApol_7kD PF03604.8 gi|147920837|ref|YP_685356.1| - 0.0074 15.7 1.6 0.011 15.1 1.1 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|147920837|ref|YP_685356.1| - 0.0092 15.6 1.1 0.011 15.4 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 IBR PF01485.16 gi|147920837|ref|YP_685356.1| - 0.012 15.4 0.7 0.013 15.3 0.5 1.1 1 0 0 1 1 1 0 IBR domain DUF2082 PF09855.4 gi|147920837|ref|YP_685356.1| - 0.022 14.6 4.1 0.091 12.6 0.4 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Nudix_N_2 PF14803.1 gi|147920837|ref|YP_685356.1| - 0.032 13.9 4.1 0.31 10.7 2.8 2.0 1 1 0 1 1 1 0 Nudix N-terminal DUF2387 PF09526.5 gi|147920837|ref|YP_685356.1| - 0.041 13.7 2.8 0.072 13.0 1.9 1.4 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|147920837|ref|YP_685356.1| - 0.048 13.4 5.1 0.39 10.5 3.6 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|147920837|ref|YP_685356.1| - 0.053 13.2 1.0 0.12 12.1 0.6 1.7 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit C1_1 PF00130.17 gi|147920837|ref|YP_685356.1| - 0.058 13.1 1.0 0.06 13.0 0.7 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_4 PF13717.1 gi|147920837|ref|YP_685356.1| - 0.064 12.9 5.6 3.2 7.5 1.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|147920837|ref|YP_685356.1| - 0.073 12.8 3.9 0.11 12.3 1.9 1.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) A2L_zn_ribbon PF08792.5 gi|147920837|ref|YP_685356.1| - 0.083 12.3 1.7 0.21 11.1 1.2 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain HypA PF01155.14 gi|147920837|ref|YP_685356.1| - 0.15 11.7 1.2 0.18 11.5 0.9 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|147920837|ref|YP_685356.1| - 0.18 11.7 4.5 3 7.8 0.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Stig1 PF04885.8 gi|147920837|ref|YP_685356.1| - 0.19 11.9 2.5 0.19 11.9 1.7 1.1 1 0 0 1 1 1 0 Stigma-specific protein, Stig1 zinc_ribbon_5 PF13719.1 gi|147920837|ref|YP_685356.1| - 0.19 11.3 7.5 1.7 8.2 0.9 2.6 1 1 1 2 2 2 0 zinc-ribbon domain DUF1936 PF09151.5 gi|147920837|ref|YP_685356.1| - 0.25 10.8 4.0 0.29 10.6 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1936) TFIIS_C PF01096.13 gi|147920837|ref|YP_685356.1| - 0.27 10.9 1.4 13 5.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.1 gi|147920837|ref|YP_685356.1| - 0.36 11.1 3.4 0.79 10.0 2.4 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|147920837|ref|YP_685356.1| - 0.44 10.1 5.1 6.6 6.3 3.6 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|147920837|ref|YP_685356.1| - 0.56 9.4 7.9 9.9 5.5 5.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Opy2 PF09463.5 gi|147920837|ref|YP_685356.1| - 0.66 10.1 3.2 2.8 8.0 2.2 1.8 1 1 0 1 1 1 0 Opy2 protein zinc_ribbon_2 PF13240.1 gi|147920837|ref|YP_685356.1| - 0.76 9.3 7.7 1.2 8.6 0.5 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|147920837|ref|YP_685356.1| - 0.87 9.6 3.7 1.3 9.0 0.5 2.0 1 1 1 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|147920837|ref|YP_685356.1| - 2.2 8.0 5.5 11 5.8 3.8 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|147920837|ref|YP_685356.1| - 2.2 7.6 5.4 6.3 6.1 3.7 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|147920837|ref|YP_685356.1| - 5.4 6.7 6.2 14 5.4 0.4 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid FeS PF04060.8 gi|147920837|ref|YP_685356.1| - 5.5 6.6 5.9 0.53 9.8 0.3 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster zf-ISL3 PF14690.1 gi|147920837|ref|YP_685356.1| - 5.9 7.0 8.1 2.9 7.9 0.8 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S24e PF01282.14 gi|297616211|ref|YP_003710350.1| - 9.3e-26 89.4 1.1 1.1e-25 89.2 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|147920838|ref|YP_685355.1| - 5.8e-43 145.1 0.2 7.5e-43 144.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|147920839|ref|YP_685354.1| - 4.6e-13 48.8 0.0 6.7e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.10 gi|147920839|ref|YP_685354.1| - 3.2e-07 29.6 0.7 4.9e-07 29.0 0.5 1.3 1 0 0 1 1 1 1 RecR protein DUF3279 PF11682.3 gi|147920839|ref|YP_685354.1| - 0.029 13.9 0.6 0.091 12.3 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3279) DZR PF12773.2 gi|147920839|ref|YP_685354.1| - 0.054 13.3 0.8 0.079 12.7 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-P11 PF03854.9 gi|147920839|ref|YP_685354.1| - 0.054 12.9 0.5 0.078 12.4 0.4 1.2 1 0 0 1 1 1 0 P-11 zinc finger Laminin_EGF PF00053.19 gi|147920839|ref|YP_685354.1| - 0.058 13.3 0.5 0.072 13.0 0.4 1.2 1 0 0 1 1 1 0 Laminin EGF-like (Domains III and V) zf-RING_4 PF14570.1 gi|147920839|ref|YP_685354.1| - 0.081 12.5 0.5 0.1 12.1 0.3 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-C3HC4_3 PF13920.1 gi|147920839|ref|YP_685354.1| - 0.092 12.4 1.1 0.13 11.9 0.8 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RRN7 PF11781.3 gi|147920839|ref|YP_685354.1| - 4.1 7.0 5.8 5.2 6.6 0.1 2.2 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Isochorismatase PF00857.15 gi|147920840|ref|YP_685353.1| - 7.4e-29 100.8 0.0 9.2e-29 100.5 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family PAC2 PF09754.4 gi|147920840|ref|YP_685353.1| - 0.033 14.0 0.0 0.049 13.4 0.0 1.3 1 1 0 1 1 1 0 PAC2 family NeuB PF03102.9 gi|147920840|ref|YP_685353.1| - 0.13 11.3 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 NeuB family DFP PF04127.10 gi|147920841|ref|YP_685352.1| - 2.7e-46 157.5 0.2 9.3e-45 152.5 0.0 2.1 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|147920841|ref|YP_685352.1| - 1.3e-29 102.5 1.0 2.4e-29 101.6 0.7 1.5 1 0 0 1 1 1 1 Flavoprotein Pyr_redox PF00070.22 gi|147920841|ref|YP_685352.1| - 0.0046 17.3 0.7 1.3 9.4 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GHMP_kinases_N PF00288.21 gi|147920842|ref|YP_685351.1| - 1.1e-08 34.9 2.8 2.7e-08 33.7 2.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|147920842|ref|YP_685351.1| - 0.017 15.3 2.6 0.026 14.6 0.0 2.4 2 1 1 3 3 3 0 GHMP kinases C terminal Catalase PF00199.14 gi|147920843|ref|YP_685350.1| - 6.6e-173 574.7 0.0 8.5e-173 574.4 0.0 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|147920843|ref|YP_685350.1| - 3.1e-23 81.3 0.0 6.6e-23 80.3 0.0 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive DJ-1_PfpI PF01965.19 gi|147920843|ref|YP_685350.1| - 1.8e-13 50.1 0.0 4.8e-13 48.8 0.0 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family GDE_N_bis PF14742.1 gi|147920844|ref|YP_685349.1| - 5.4e-53 179.2 0.1 7.7e-53 178.7 0.1 1.2 1 0 0 1 1 1 1 N-terminal domain of (some) glycogen debranching enzymes GDE_C PF06202.9 gi|147920844|ref|YP_685349.1| - 2.3e-18 66.0 0.0 4.9e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase Bac_rhamnosid PF05592.6 gi|147920844|ref|YP_685349.1| - 0.00078 17.7 0.0 0.0019 16.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase Trehalase PF01204.13 gi|147920844|ref|YP_685349.1| - 0.002 16.8 0.0 0.003 16.2 0.0 1.1 1 0 0 1 1 1 1 Trehalase E1-E2_ATPase PF00122.15 gi|147920845|ref|YP_685348.1| - 4e-71 238.7 5.7 4e-71 238.7 3.9 3.0 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|147920845|ref|YP_685348.1| - 6.1e-42 143.2 8.0 6.1e-42 143.2 5.6 2.0 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|147920845|ref|YP_685348.1| - 1e-29 104.4 0.0 8.5e-29 101.4 0.0 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|147920845|ref|YP_685348.1| - 1.2e-17 63.0 0.0 3e-17 61.8 0.0 1.7 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|147920845|ref|YP_685348.1| - 6.9e-14 52.4 0.0 1.6e-13 51.2 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|147920845|ref|YP_685348.1| - 7.5e-13 48.2 0.0 1.4e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|147920845|ref|YP_685348.1| - 1.9e-09 37.4 0.2 7.4e-05 22.4 0.1 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|147920845|ref|YP_685348.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase eRF1_1 PF03463.10 gi|147920848|ref|YP_685345.1| - 4.3e-33 113.7 0.1 7.1e-33 112.9 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|147920848|ref|YP_685345.1| - 5.9e-24 84.9 0.4 8.7e-24 84.3 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|147920848|ref|YP_685345.1| - 1.5e-23 83.1 0.1 5.1e-23 81.4 0.0 1.9 1 0 0 1 1 1 1 eRF1 domain 3 FbpA PF05833.6 gi|147920849|ref|YP_685344.1| - 1.2e-97 327.3 5.2 1.6e-97 326.9 3.6 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|147920849|ref|YP_685344.1| - 4.9e-30 103.2 0.0 1.1e-29 102.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) H2TH PF06831.9 gi|147920849|ref|YP_685344.1| - 0.00012 21.7 0.0 0.00063 19.4 0.0 2.2 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain RNA_pol_Rpb2_45 PF10385.4 gi|147920849|ref|YP_685344.1| - 0.019 14.7 0.3 0.33 10.7 0.0 2.7 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain MerR-DNA-bind PF09278.6 gi|147920849|ref|YP_685344.1| - 0.1 13.0 2.7 0.86 10.0 0.0 3.1 3 0 0 3 3 3 0 MerR, DNA binding DUF2229 PF09989.4 gi|147920849|ref|YP_685344.1| - 1.5 8.2 4.7 0.63 9.4 0.2 2.3 2 0 0 2 2 2 0 CoA enzyme activase uncharacterised domain (DUF2229) DUF1183 PF06682.7 gi|147920851|ref|YP_685342.1| - 6.2 6.3 13.8 0.38 10.3 6.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1183) Rpr2 PF04032.11 gi|147920852|ref|YP_685341.1| - 2.1e-19 69.1 0.0 2.5e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|147920852|ref|YP_685341.1| - 0.0041 16.9 0.6 0.0069 16.1 0.4 1.4 1 0 0 1 1 1 1 Putative zinc ribbon domain DUF1411 PF07199.6 gi|147920852|ref|YP_685341.1| - 0.0083 15.5 0.0 0.0099 15.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1411) Ribosomal_L40e PF01020.12 gi|147920852|ref|YP_685341.1| - 0.014 14.9 3.3 0.025 14.1 2.3 1.5 1 0 0 1 1 1 0 Ribosomal L40e family NMD3 PF04981.8 gi|147920852|ref|YP_685341.1| - 0.073 12.1 0.3 0.13 11.3 0.2 1.5 1 1 0 1 1 1 0 NMD3 family XPG_I PF00867.13 gi|147920854|ref|YP_685339.1| - 1.8e-29 101.6 0.0 3.8e-29 100.5 0.0 1.6 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|147920854|ref|YP_685339.1| - 8.6e-21 74.1 0.0 1.6e-20 73.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|147920854|ref|YP_685339.1| - 0.00017 21.7 0.0 0.00043 20.4 0.0 1.7 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold DUF169 PF02596.10 gi|147920855|ref|YP_685338.1| - 4.4e-74 248.5 0.0 5e-74 248.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 PAS_9 PF13426.1 gi|147920856|ref|YP_685337.1| - 1.1e-35 122.1 0.0 6.6e-14 52.1 0.0 3.8 4 0 0 4 4 4 3 PAS domain PAS_3 PF08447.6 gi|147920856|ref|YP_685337.1| - 3.7e-23 81.4 0.1 1.9e-09 37.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|147920856|ref|YP_685337.1| - 4.2e-20 71.6 0.0 5.3e-09 35.8 0.0 3.6 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|147920856|ref|YP_685337.1| - 8.3e-18 64.1 0.1 2.5e-17 62.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147920856|ref|YP_685337.1| - 5.4e-15 55.3 0.0 2.8e-06 27.3 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|147920856|ref|YP_685337.1| - 7.3e-14 51.0 0.0 0.00028 20.6 0.0 3.6 3 0 0 3 3 3 3 PAS domain HATPase_c_2 PF13581.1 gi|147920856|ref|YP_685337.1| - 0.0002 21.1 0.0 0.00046 19.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|147920856|ref|YP_685337.1| - 0.027 14.1 0.0 0.077 12.7 0.0 1.7 1 0 0 1 1 1 0 GHKL domain CARD PF00619.16 gi|147920856|ref|YP_685337.1| - 0.036 13.9 0.2 0.083 12.7 0.1 1.5 1 0 0 1 1 1 0 Caspase recruitment domain KaiC PF06745.8 gi|147920856|ref|YP_685337.1| - 0.044 12.8 0.1 0.085 11.9 0.0 1.4 1 0 0 1 1 1 0 KaiC AP_endonuc_2 PF01261.19 gi|147920857|ref|YP_685336.1| - 1.8e-08 33.9 0.0 7.3e-06 25.4 0.0 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel GXGXG PF01493.14 gi|147920859|ref|YP_685334.1| - 9.1e-34 116.2 21.0 1.7e-33 115.3 14.5 1.4 1 1 0 1 1 1 1 GXGXG motif Gp5_C PF06715.7 gi|147920859|ref|YP_685334.1| - 1.6 8.8 4.4 3.6 7.6 0.8 3.3 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) Amidohydro_3 PF07969.6 gi|147920860|ref|YP_685333.1| - 1.5e-63 215.4 0.6 1.8e-63 215.1 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|147920860|ref|YP_685333.1| - 1.8e-12 46.8 3.1 5.1e-12 45.4 0.1 2.8 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|147920860|ref|YP_685333.1| - 1.1e-08 35.5 0.6 0.0004 20.5 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|147920860|ref|YP_685333.1| - 3.1e-08 33.6 0.7 0.0017 18.0 0.2 2.5 2 1 1 3 3 3 2 Amidohydrolase family Molybdopterin PF00384.17 gi|147920861|ref|YP_685332.1| - 3.6e-10 39.1 0.0 3.5e-09 35.8 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin oxidoreductase TPP_enzyme_M PF00205.17 gi|147920861|ref|YP_685332.1| - 0.025 14.3 0.0 0.56 9.9 0.0 2.7 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain zf-ribbon_3 PF13248.1 gi|147920861|ref|YP_685332.1| - 0.082 12.1 1.0 1.3 8.3 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Molydop_binding PF01568.16 gi|147920862|ref|YP_685331.1| - 3e-14 52.7 0.0 3.8e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain FlpD PF02662.11 gi|147920863|ref|YP_685330.1| - 3.8e-51 171.9 0.1 5.7e-51 171.3 0.1 1.3 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Hexapep PF00132.19 gi|147920863|ref|YP_685330.1| - 0.12 11.9 0.1 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Fer4 PF00037.22 gi|147920864|ref|YP_685329.1| - 3.1e-16 58.2 40.8 1.9e-05 24.0 2.2 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920864|ref|YP_685329.1| - 1.3e-14 53.7 27.1 1.3e-07 31.3 5.2 4.2 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147920864|ref|YP_685329.1| - 3e-13 49.9 36.1 2.9e-09 37.1 7.2 4.2 3 1 2 5 5 5 3 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|147920864|ref|YP_685329.1| - 4.5e-11 43.0 0.9 1.3e-09 38.2 0.6 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.1 gi|147920864|ref|YP_685329.1| - 3.4e-08 34.1 26.0 0.0092 16.7 0.5 4.9 5 0 0 5 5 4 4 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|147920864|ref|YP_685329.1| - 6.8e-08 32.0 44.5 9.4e-05 22.1 3.3 5.1 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147920864|ref|YP_685329.1| - 2.5e-07 30.8 39.9 1.6e-06 28.2 6.2 4.5 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147920864|ref|YP_685329.1| - 2.8e-07 30.4 30.5 0.00033 20.6 7.1 3.8 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147920864|ref|YP_685329.1| - 4.9e-07 29.4 38.0 0.00074 19.2 7.1 4.7 4 2 1 5 5 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920864|ref|YP_685329.1| - 1.3e-05 24.8 42.1 0.01 15.7 3.4 5.2 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147920864|ref|YP_685329.1| - 3.2e-05 24.1 31.0 0.00042 20.5 4.8 4.6 3 2 2 5 5 5 3 4Fe-4S dicluster domain GIDA PF01134.17 gi|147920864|ref|YP_685329.1| - 0.00028 19.8 0.1 0.00066 18.6 0.1 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.19 gi|147920864|ref|YP_685329.1| - 0.00036 19.5 0.0 0.09 11.6 0.2 3.1 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|147920864|ref|YP_685329.1| - 0.00054 19.1 0.1 0.00054 19.1 0.1 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|147920864|ref|YP_685329.1| - 0.00067 19.6 0.0 0.0019 18.1 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_15 PF13459.1 gi|147920864|ref|YP_685329.1| - 0.00067 20.1 29.2 0.18 12.3 1.5 4.9 3 1 1 4 4 4 3 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|147920864|ref|YP_685329.1| - 0.0007 18.5 0.7 0.0011 17.8 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|147920864|ref|YP_685329.1| - 0.0044 17.1 0.0 0.0089 16.1 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|147920864|ref|YP_685329.1| - 0.0057 17.0 0.7 0.019 15.3 0.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|147920864|ref|YP_685329.1| - 0.038 13.0 0.0 0.085 11.9 0.0 1.5 1 0 0 1 1 1 0 Thi4 family FAD_binding_3 PF01494.14 gi|147920864|ref|YP_685329.1| - 0.069 12.1 0.5 0.12 11.3 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain Fer4_18 PF13746.1 gi|147920864|ref|YP_685329.1| - 0.12 12.8 39.2 1.3 9.4 4.1 5.3 4 2 1 5 5 5 0 4Fe-4S dicluster domain HI0933_like PF03486.9 gi|147920864|ref|YP_685329.1| - 0.38 9.1 1.7 0.88 7.9 0.7 1.9 2 0 0 2 2 2 0 HI0933-like protein CCG PF02754.11 gi|147920865|ref|YP_685328.1| - 3e-33 113.6 2.7 4.1e-20 71.5 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|147920866|ref|YP_687321.1| - 1.2e-10 41.2 8.3 1.8e-10 40.7 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147920866|ref|YP_687321.1| - 1.6e-10 41.1 8.7 2.6e-10 40.5 6.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920866|ref|YP_687321.1| - 3.1e-06 27.3 8.7 1.1e-05 25.6 6.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147920866|ref|YP_687321.1| - 2.1e-05 24.2 7.6 3.8e-05 23.3 5.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920866|ref|YP_687321.1| - 2.4e-05 24.9 1.7 0.11 13.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|147920866|ref|YP_687321.1| - 0.003 17.9 10.5 0.0086 16.4 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920866|ref|YP_687321.1| - 0.0052 17.1 13.0 0.23 11.9 2.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147920866|ref|YP_687321.1| - 0.0068 16.2 5.7 0.015 15.1 3.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920866|ref|YP_687321.1| - 0.12 12.3 12.5 1.4 9.0 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147920866|ref|YP_687321.1| - 0.27 11.6 12.1 3.1 8.3 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|147920866|ref|YP_687321.1| - 0.36 10.5 14.2 2.1 8.0 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|147920866|ref|YP_687321.1| - 1.4 8.6 6.7 2.5 7.7 0.4 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|147920866|ref|YP_687321.1| - 1.8 8.5 11.6 0.51 10.3 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|147920867|ref|YP_687320.1| - 1.6e-41 138.2 86.0 2e-08 33.4 2.9 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147920867|ref|YP_687320.1| - 5.2e-35 119.5 66.4 1.6e-11 44.3 6.8 5.4 3 1 1 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147920867|ref|YP_687320.1| - 6.3e-29 99.5 69.5 1.9e-08 33.9 5.1 5.8 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147920867|ref|YP_687320.1| - 1.5e-26 92.0 64.2 2e-06 27.5 6.8 6.2 5 1 1 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147920867|ref|YP_687320.1| - 5e-26 89.4 88.0 7.6e-06 25.5 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147920867|ref|YP_687320.1| - 3.5e-25 88.5 70.7 5.8e-08 33.3 5.9 6.5 4 2 2 6 6 6 5 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|147920867|ref|YP_687320.1| - 1.6e-24 84.3 77.9 5.6e-06 25.9 2.4 8.2 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147920867|ref|YP_687320.1| - 1.6e-23 82.6 73.0 1.2e-07 31.8 6.5 6.2 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147920867|ref|YP_687320.1| - 5.4e-18 64.7 63.5 2.1e-05 24.4 6.1 5.8 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147920867|ref|YP_687320.1| - 1.6e-13 50.9 56.3 0.0049 17.4 1.3 8.2 8 0 0 8 8 8 7 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|147920867|ref|YP_687320.1| - 5.3e-13 49.1 59.7 0.00038 20.7 5.0 7.0 3 1 5 8 8 8 7 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920867|ref|YP_687320.1| - 1.5e-09 37.4 80.8 9.3e-05 22.4 1.5 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147920867|ref|YP_687320.1| - 2.8e-07 30.6 100.1 0.11 13.1 3.0 8.4 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147920867|ref|YP_687320.1| - 2.2e-06 27.9 73.4 0.0026 18.1 0.2 8.2 5 2 3 8 8 8 4 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147920867|ref|YP_687320.1| - 8.1e-06 26.1 77.2 0.068 13.5 0.3 8.2 8 0 0 8 8 7 7 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|147920867|ref|YP_687320.1| - 0.0045 16.8 48.7 0.11 12.4 10.5 5.6 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147920868|ref|YP_685325.1| - 9.7e-16 56.6 16.1 9.8e-09 34.4 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920868|ref|YP_685325.1| - 4.5e-13 48.8 23.4 5.9e-10 38.8 8.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920868|ref|YP_685325.1| - 6.6e-13 49.2 18.2 1e-09 38.9 6.3 1.8 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|147920868|ref|YP_685325.1| - 1.5e-12 47.7 9.9 2.2e-12 47.1 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920868|ref|YP_685325.1| - 6.5e-12 44.6 14.4 4.8e-06 26.1 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147920868|ref|YP_685325.1| - 2.6e-11 43.1 7.1 2.6e-05 23.9 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147920868|ref|YP_685325.1| - 3e-11 42.6 14.9 3.1e-06 26.8 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147920868|ref|YP_685325.1| - 2.1e-10 40.6 10.3 3.2e-10 40.1 7.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920868|ref|YP_685325.1| - 1.7e-07 30.9 12.0 0.00093 19.3 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147920868|ref|YP_685325.1| - 2.7e-07 30.9 9.3 0.0026 18.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147920868|ref|YP_685325.1| - 7.7e-07 29.5 9.1 0.0013 19.2 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|147920868|ref|YP_685325.1| - 9.7e-07 28.9 21.3 0.0021 18.4 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147920868|ref|YP_685325.1| - 2.1e-06 27.6 25.3 5e-05 23.2 9.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147920868|ref|YP_685325.1| - 3.2e-05 24.1 11.0 0.00047 20.4 8.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147920868|ref|YP_685325.1| - 0.00051 19.8 4.9 0.21 11.4 0.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147920868|ref|YP_685325.1| - 0.0035 17.6 13.1 0.087 13.2 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain DUF164 PF02591.10 gi|147920868|ref|YP_685325.1| - 0.059 13.1 5.8 2.3 8.1 0.4 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain POC1 PF10450.4 gi|147920869|ref|YP_685324.1| - 0.043 12.5 0.1 0.048 12.4 0.1 1.0 1 0 0 1 1 1 0 POC1 chaperone Oxidored_q6 PF01058.17 gi|147920870|ref|YP_685323.1| - 2.9e-28 98.1 0.1 4.5e-28 97.4 0.1 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DHHA1 PF02272.14 gi|147920870|ref|YP_685323.1| - 0.06 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 DHHA1 domain KR PF08659.5 gi|147920870|ref|YP_685323.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 KR domain NiFeSe_Hases PF00374.14 gi|147920871|ref|YP_685322.1| - 5.3e-40 137.6 0.1 6.6e-25 87.8 0.0 2.1 2 0 0 2 2 2 2 Nickel-dependent hydrogenase EamA PF00892.15 gi|147920872|ref|YP_685321.1| - 6.7e-45 152.1 41.2 1.2e-23 83.5 12.2 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|147920872|ref|YP_685321.1| - 6.7e-11 42.3 38.0 4.6e-10 39.6 6.8 3.2 3 1 0 3 3 3 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|147920872|ref|YP_685321.1| - 0.004 16.0 11.1 0.0066 15.3 7.7 1.4 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) UAA PF08449.6 gi|147920872|ref|YP_685321.1| - 0.0051 15.7 17.3 0.015 14.2 3.4 2.1 2 0 0 2 2 2 2 UAA transporter family TPT PF03151.11 gi|147920872|ref|YP_685321.1| - 0.018 14.6 26.6 0.1 12.2 5.1 2.6 2 1 0 2 2 2 0 Triose-phosphate Transporter family PIRT PF15099.1 gi|147920872|ref|YP_685321.1| - 0.43 9.8 5.8 0.092 11.9 0.5 2.3 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family Cadherin-like PF12733.2 gi|147920873|ref|YP_685320.1| - 0.0075 16.5 1.3 1.6 9.0 0.1 2.4 2 0 0 2 2 2 2 Cadherin-like beta sandwich domain Myco_19_kDa PF05481.7 gi|147920873|ref|YP_685320.1| - 0.017 14.9 5.4 0.017 14.9 3.7 2.1 2 1 1 3 3 3 0 Mycobacterium 19 kDa lipoprotein antigen DIM PF08194.7 gi|147920873|ref|YP_685320.1| - 0.7 9.8 3.9 13 5.7 0.1 2.6 2 0 0 2 2 2 0 DIM protein TctA PF01970.11 gi|147920874|ref|YP_685319.1| - 5.4e-74 249.0 48.6 6.2e-74 248.8 33.7 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family PLDc_N PF13396.1 gi|147920874|ref|YP_685319.1| - 9.3 6.0 14.3 1.2 8.8 0.7 3.6 3 0 0 3 3 3 0 Phospholipase_D-nuclease N-terminal Rieske_2 PF13806.1 gi|147920875|ref|YP_685318.1| - 5.4e-15 54.9 0.0 6.1e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.21 gi|147920875|ref|YP_685318.1| - 4.1e-14 51.9 0.0 4.4e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF3789 PF12664.2 gi|147920875|ref|YP_685318.1| - 1.9 7.8 5.7 0.78 9.1 2.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3789) DNA_processg_A PF02481.10 gi|147920876|ref|YP_685317.1| - 0.0012 17.7 0.1 0.0067 15.3 0.0 1.9 2 0 0 2 2 2 1 DNA recombination-mediator protein A Lysine_decarbox PF03641.9 gi|147920876|ref|YP_685317.1| - 0.032 14.0 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 Possible lysine decarboxylase Neocarzinostat PF00960.13 gi|147920876|ref|YP_685317.1| - 0.11 12.4 0.6 0.2 11.5 0.5 1.4 1 0 0 1 1 1 0 Neocarzinostatin family HisG PF01634.13 gi|147920877|ref|YP_685316.1| - 3.7e-51 172.9 0.4 8.3e-51 171.7 0.2 1.6 2 0 0 2 2 2 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|147920877|ref|YP_685316.1| - 4.3e-26 90.6 0.1 8.5e-26 89.7 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|147920877|ref|YP_685316.1| - 0.00022 20.8 0.0 0.00084 18.9 0.0 2.0 1 1 0 1 1 1 1 NMT1/THI5 like PcrB PF01884.12 gi|147920878|ref|YP_685315.1| - 1.2e-57 194.8 0.1 1.4e-57 194.6 0.1 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|147920878|ref|YP_685315.1| - 0.0028 16.2 0.0 0.0057 15.2 0.0 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|147920878|ref|YP_685315.1| - 0.019 14.2 0.1 0.078 12.2 0.0 1.8 2 0 0 2 2 2 0 Histidine biosynthesis protein PcrB PF01884.12 gi|147920879|ref|YP_685314.1| - 5.1e-60 202.5 2.1 5.9e-60 202.3 1.5 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|147920879|ref|YP_685314.1| - 0.0014 17.1 0.2 0.0039 15.7 0.0 1.7 2 0 0 2 2 2 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|147920879|ref|YP_685314.1| - 0.0015 17.8 0.0 0.016 14.4 0.0 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein DapB_N PF01113.15 gi|147920879|ref|YP_685314.1| - 0.045 13.6 0.3 0.65 9.9 0.0 2.5 2 1 1 3 3 3 0 Dihydrodipicolinate reductase, N-terminus Methyltransf_11 PF08241.7 gi|147920880|ref|YP_684471.1| - 1.6e-24 86.1 0.0 2.4e-24 85.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147920880|ref|YP_684471.1| - 6.4e-22 77.7 0.0 7.5e-22 77.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147920880|ref|YP_684471.1| - 9.3e-18 64.4 0.0 1.5e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147920880|ref|YP_684471.1| - 1.1e-16 61.3 0.0 1.7e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147920880|ref|YP_684471.1| - 1.6e-16 60.5 0.0 2.5e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147920880|ref|YP_684471.1| - 3.3e-16 59.4 0.0 4.3e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147920880|ref|YP_684471.1| - 4.6e-15 55.3 0.0 6.1e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|147920880|ref|YP_684471.1| - 5.3e-12 45.8 0.0 8.1e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147920880|ref|YP_684471.1| - 1.8e-11 43.7 0.0 2.4e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|147920880|ref|YP_684471.1| - 1.5e-07 30.9 0.0 2.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.12 gi|147920880|ref|YP_684471.1| - 2.7e-07 29.8 0.0 4.7e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|147920880|ref|YP_684471.1| - 0.00018 21.2 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|147920880|ref|YP_684471.1| - 0.001 18.1 0.0 0.0013 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|147920880|ref|YP_684471.1| - 0.0011 18.5 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.13 gi|147920880|ref|YP_684471.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TehB PF03848.9 gi|147920880|ref|YP_684471.1| - 0.0018 17.4 0.0 0.0026 16.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB FmrO PF07091.6 gi|147920880|ref|YP_684471.1| - 0.0028 16.6 0.0 0.004 16.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_8 PF05148.10 gi|147920880|ref|YP_684471.1| - 0.0071 15.9 0.0 0.012 15.2 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase GidB PF02527.10 gi|147920880|ref|YP_684471.1| - 0.016 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PrmA PF06325.8 gi|147920880|ref|YP_684471.1| - 0.059 12.4 0.0 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|147920880|ref|YP_684471.1| - 0.08 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase DUF938 PF06080.7 gi|147920880|ref|YP_684471.1| - 0.087 12.3 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Vg_Tdu PF07545.9 gi|147920880|ref|YP_684471.1| - 0.1 12.0 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Vestigial/Tondu family DREV PF05219.7 gi|147920880|ref|YP_684471.1| - 0.11 11.2 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_9 PF08003.6 gi|147920880|ref|YP_684471.1| - 0.12 11.0 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UbiA PF01040.13 gi|147920881|ref|YP_685312.1| - 2.1e-37 128.7 19.7 3.2e-37 128.1 13.7 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF21 PF01595.15 gi|147920881|ref|YP_685312.1| - 1.8 7.8 20.6 0.13 11.4 0.3 3.0 4 0 0 4 4 4 0 Domain of unknown function DUF21 DUF3488 PF11992.3 gi|147920881|ref|YP_685312.1| - 4.1 5.9 15.5 2.7 6.5 1.2 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3488) DUF367 PF04034.8 gi|147920882|ref|YP_685311.1| - 1.5e-45 153.8 0.0 2e-45 153.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|147920882|ref|YP_685311.1| - 1.5e-09 37.2 0.0 2.4e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Cupin_2 PF07883.6 gi|147920883|ref|YP_685310.1| - 2.5e-16 58.9 0.0 4e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|147920883|ref|YP_685310.1| - 8.4e-08 31.9 0.1 1.2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|147920883|ref|YP_685310.1| - 2.1e-05 24.1 0.0 2.5e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|147920883|ref|YP_685310.1| - 7.9e-05 22.1 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|147920883|ref|YP_685310.1| - 0.012 15.1 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_7 PF12973.2 gi|147920883|ref|YP_685310.1| - 0.013 15.3 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain GPI PF06560.6 gi|147920883|ref|YP_685310.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 2 0 0 2 2 2 0 Glucose-6-phosphate isomerase (GPI) PAS_9 PF13426.1 gi|147920884|ref|YP_685309.1| - 1.7e-85 282.1 0.1 1.1e-19 70.6 0.0 6.4 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|147920884|ref|YP_685309.1| - 4.9e-68 226.1 0.0 6.6e-13 48.6 0.0 6.8 6 1 0 6 6 6 6 PAS fold PAS PF00989.19 gi|147920884|ref|YP_685309.1| - 1.9e-65 217.7 0.1 1.2e-13 50.8 0.0 7.6 6 2 0 6 6 6 5 PAS fold PAS_3 PF08447.6 gi|147920884|ref|YP_685309.1| - 4.1e-38 129.3 0.0 2.1e-09 37.3 0.1 6.7 7 0 0 7 7 7 4 PAS fold PAS_8 PF13188.1 gi|147920884|ref|YP_685309.1| - 1e-21 75.9 0.0 0.00049 19.8 0.0 5.8 6 0 0 6 6 6 4 PAS domain PAS_10 PF13596.1 gi|147920884|ref|YP_685309.1| - 3.7e-13 49.6 0.1 0.0025 18.0 0.0 6.6 7 1 0 7 7 7 2 PAS domain PAS_7 PF12860.2 gi|147920884|ref|YP_685309.1| - 6.3e-08 32.6 1.2 0.24 11.4 0.0 5.6 5 2 0 5 5 5 2 PAS fold DUF4118 PF13493.1 gi|147920884|ref|YP_685309.1| - 3.2e-06 27.2 6.8 6.2e-06 26.3 4.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) Cache_3 PF14827.1 gi|147920884|ref|YP_685309.1| - 0.002 18.0 5.0 1 9.2 0.0 3.8 4 0 0 4 4 4 2 Sensory domain of two-component sensor kinase SapC PF07277.6 gi|147920884|ref|YP_685309.1| - 0.011 15.0 0.4 0.025 13.9 0.3 1.5 1 0 0 1 1 1 0 SapC IncA PF04156.9 gi|147920884|ref|YP_685309.1| - 0.017 14.7 2.3 1.6 8.2 0.2 3.0 3 0 0 3 3 3 0 IncA protein PAS_11 PF14598.1 gi|147920884|ref|YP_685309.1| - 0.036 14.0 0.0 5 7.1 0.0 2.8 2 0 0 2 2 2 0 PAS domain HALZ PF02183.13 gi|147920884|ref|YP_685309.1| - 1.3 8.7 9.4 0.81 9.4 0.4 3.0 3 0 0 3 3 3 0 Homeobox associated leucine zipper DEAD PF00270.24 gi|147920885|ref|YP_685308.1| - 2.2e-29 102.0 0.0 1.6e-28 99.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|147920885|ref|YP_685308.1| - 4.1e-11 42.8 0.9 2.5e-10 40.3 0.3 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|147920885|ref|YP_685308.1| - 6.7e-08 32.2 0.0 1.6e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147920885|ref|YP_685308.1| - 2.2e-07 30.8 0.0 7.1e-07 29.2 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|147920885|ref|YP_685308.1| - 4e-05 23.4 0.2 0.00019 21.2 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|147920885|ref|YP_685308.1| - 0.00017 21.1 2.8 0.6 9.9 0.1 3.6 3 0 0 3 3 3 2 Helix-hairpin-helix motif CheC PF04509.7 gi|147920885|ref|YP_685308.1| - 0.031 14.0 0.0 0.08 12.6 0.0 1.7 1 0 0 1 1 1 0 CheC-like family DNA_pol_lambd_f PF10391.4 gi|147920885|ref|YP_685308.1| - 0.038 13.5 0.0 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda CGI-121 PF08617.5 gi|147920886|ref|YP_685307.1| - 1.6e-21 76.6 0.0 1.8e-21 76.4 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 DUF3795 PF12675.2 gi|147920887|ref|YP_685306.1| - 2.5e-08 33.9 16.5 2.5e-08 33.9 11.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3795) FdhD-NarQ PF02634.10 gi|147920888|ref|YP_685305.1| - 6.6e-53 179.5 0.0 7.6e-53 179.3 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family TFX_C PF14601.1 gi|147920889|ref|YP_685304.1| - 7.9e-31 105.6 0.9 7.9e-31 105.6 0.6 1.6 2 0 0 2 2 2 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|147920889|ref|YP_685304.1| - 3.7e-06 26.1 2.5 6.3e-06 25.4 1.7 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|147920889|ref|YP_685304.1| - 0.00021 20.5 0.9 0.00034 19.8 0.5 1.5 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|147920889|ref|YP_685304.1| - 0.00023 20.9 0.8 0.0005 19.8 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147920889|ref|YP_685304.1| - 0.00031 20.7 0.6 0.00056 19.9 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|147920889|ref|YP_685304.1| - 0.00095 19.3 0.3 0.0014 18.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|147920889|ref|YP_685304.1| - 0.0029 17.2 1.3 0.0061 16.1 0.9 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.1 gi|147920889|ref|YP_685304.1| - 0.0033 17.1 0.7 0.0056 16.4 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2201 PF09967.4 gi|147920889|ref|YP_685304.1| - 0.011 15.7 0.2 0.015 15.2 0.1 1.2 1 0 0 1 1 1 0 VWA-like domain (DUF2201) HTH_7 PF02796.10 gi|147920889|ref|YP_685304.1| - 0.011 15.5 0.2 0.033 14.0 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF2481 PF10654.4 gi|147920889|ref|YP_685304.1| - 0.011 15.3 0.1 0.023 14.4 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_38 PF13936.1 gi|147920889|ref|YP_685304.1| - 0.019 14.4 0.3 0.062 12.8 0.2 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147920889|ref|YP_685304.1| - 0.022 14.2 0.1 0.037 13.4 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DMAP1 PF05499.7 gi|147920889|ref|YP_685304.1| - 0.026 14.0 0.6 0.044 13.3 0.4 1.4 1 1 0 1 1 1 0 DNA methyltransferase 1-associated protein 1 (DMAP1) Cupredoxin_1 PF13473.1 gi|147920889|ref|YP_685304.1| - 0.028 14.3 0.4 0.041 13.7 0.3 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain Cation_ATPase_N PF00690.21 gi|147920889|ref|YP_685304.1| - 0.038 13.4 0.1 0.063 12.7 0.1 1.4 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus UPF0122 PF04297.9 gi|147920889|ref|YP_685304.1| - 0.04 13.9 0.1 0.063 13.3 0.1 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.17 gi|147920889|ref|YP_685304.1| - 0.074 12.7 0.2 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 MarR family RepB PF07506.6 gi|147920889|ref|YP_685304.1| - 0.13 12.0 0.8 0.29 10.9 0.3 1.7 1 1 1 2 2 2 0 RepB plasmid partitioning protein DUF1786 PF08735.5 gi|147920890|ref|YP_685303.1| - 2.2e-91 305.5 1.0 2.6e-91 305.3 0.7 1.0 1 0 0 1 1 1 1 Putative pyruvate format-lyase activating enzyme (DUF1786) SrfB PF07520.6 gi|147920890|ref|YP_685303.1| - 0.0019 15.8 0.0 0.0033 14.9 0.0 1.4 2 0 0 2 2 2 1 Virulence factor SrfB tRNA-synt_1d PF00750.14 gi|147920891|ref|YP_685302.1| - 5.1e-64 216.3 0.0 6.5e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|147920891|ref|YP_685302.1| - 7.6e-31 106.5 0.6 3.3e-30 104.4 0.4 2.2 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|147920891|ref|YP_685302.1| - 1.1e-14 54.7 0.7 4.5e-14 52.7 0.0 2.5 3 0 0 3 3 3 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|147920891|ref|YP_685302.1| - 0.00011 20.9 0.0 0.3 9.7 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (K) DUF4338 PF14236.1 gi|147920891|ref|YP_685302.1| - 0.011 14.4 0.1 0.019 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4338) tRNA-synt_1g PF09334.6 gi|147920891|ref|YP_685302.1| - 0.022 13.4 0.2 20 3.7 0.0 3.5 4 0 0 4 4 4 0 tRNA synthetases class I (M) DUF4146 PF13652.1 gi|147920891|ref|YP_685302.1| - 0.03 14.1 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4146) eRF1_2 PF03464.10 gi|147920892|ref|YP_685301.1| - 3.1e-34 118.1 0.0 5.4e-34 117.3 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|147920892|ref|YP_685301.1| - 1.7e-32 112.0 0.8 5.6e-32 110.3 0.2 2.0 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|147920892|ref|YP_685301.1| - 2.6e-25 88.5 0.0 7.4e-25 87.0 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 1 zf-DNL PF05180.7 gi|147920892|ref|YP_685301.1| - 0.0012 18.5 0.2 0.0036 16.9 0.1 1.8 1 0 0 1 1 1 1 DNL zinc finger Clr5 PF14420.1 gi|147920892|ref|YP_685301.1| - 0.033 14.0 0.1 0.21 11.5 0.0 2.3 2 0 0 2 2 2 0 Clr5 domain zf-TFIIB PF13453.1 gi|147920892|ref|YP_685301.1| - 0.11 11.6 0.1 0.39 9.9 0.0 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger Lactamase_B PF00753.22 gi|147920894|ref|YP_685299.1| - 7.8e-20 71.3 1.1 9e-20 71.1 0.1 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|147920894|ref|YP_685299.1| - 8.7e-09 35.0 0.3 1.9e-08 34.0 0.2 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|147920894|ref|YP_685299.1| - 3.7e-07 29.8 0.3 2.3e-05 24.0 0.1 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Bac_luciferase PF00296.15 gi|147920895|ref|YP_685298.1| - 2.6e-59 200.8 0.0 3e-59 200.6 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Chon_Sulph_att PF06566.6 gi|147920895|ref|YP_685298.1| - 0.0046 16.6 0.1 0.0076 15.9 0.1 1.3 1 0 0 1 1 1 1 Chondroitin sulphate attachment domain DeoC PF01791.4 gi|147920896|ref|YP_685297.1| - 1.4e-48 165.2 0.5 1.6e-48 165.0 0.3 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|147920896|ref|YP_685297.1| - 0.0052 16.0 0.2 0.024 13.8 0.0 2.0 1 1 0 2 2 2 1 Histidine biosynthesis protein IMPDH PF00478.20 gi|147920896|ref|YP_685297.1| - 0.016 14.1 0.1 0.016 14.1 0.1 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|147920896|ref|YP_685297.1| - 0.022 13.7 0.2 0.097 11.6 0.2 1.9 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|147920896|ref|YP_685297.1| - 0.12 11.5 0.4 0.25 10.5 0.1 1.7 1 1 1 2 2 2 0 PcrB family Big_3_4 PF13754.1 gi|147920897|ref|YP_685296.1| - 1.7e-36 124.3 148.5 3e-07 30.6 4.0 14.9 17 0 0 17 17 17 11 Bacterial Ig-like domain (group 3) CHB_HEX_C_1 PF13290.1 gi|147920897|ref|YP_685296.1| - 1.1e-21 76.3 58.7 2.1e-06 27.3 1.9 10.1 10 1 0 10 10 10 5 Chitobiase/beta-hexosaminidase C-terminal domain HYR PF02494.11 gi|147920897|ref|YP_685296.1| - 4.5e-09 36.1 48.3 0.26 11.3 0.1 11.2 10 1 1 11 11 11 5 HYR domain SWM_repeat PF13753.1 gi|147920897|ref|YP_685296.1| - 6.1e-05 22.2 112.3 0.097 11.6 7.9 9.0 1 1 2 6 6 6 4 Putative flagellar system-associated repeat Big_3_2 PF12245.3 gi|147920897|ref|YP_685296.1| - 7.1e-05 22.2 16.7 2.1 7.9 0.0 7.8 7 0 0 7 7 7 1 Bacterial Ig-like domain (group 3) DUF4366 PF14283.1 gi|147920897|ref|YP_685296.1| - 0.0024 17.3 0.1 0.014 14.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) Bunya_G2 PF03563.8 gi|147920897|ref|YP_685296.1| - 0.013 14.4 0.6 8.7 5.1 0.0 3.3 3 0 0 3 3 3 0 Bunyavirus glycoprotein G2 Trypan_PARP PF05887.6 gi|147920897|ref|YP_685296.1| - 0.11 12.3 5.8 0.24 11.1 4.0 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF4625 PF15418.1 gi|147920897|ref|YP_685296.1| - 0.16 12.0 2.7 30 4.7 0.0 4.7 5 1 2 7 7 7 0 Domain of unknown function (DUF4625) Ribosomal_S27 PF01599.14 gi|147920897|ref|YP_685296.1| - 3.9 7.3 4.8 20 5.1 0.0 3.6 4 0 0 4 4 4 0 Ribosomal protein S27a TPR_1 PF00515.23 gi|147920898|ref|YP_685295.1| - 1.7e-63 207.8 14.9 2.4e-08 33.2 0.0 10.2 10 1 0 10 10 10 9 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147920898|ref|YP_685295.1| - 2.6e-60 195.5 18.4 6.2e-07 28.8 0.2 10.2 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147920898|ref|YP_685295.1| - 1.3e-59 197.7 17.3 1.2e-13 50.5 0.1 6.4 2 2 2 6 6 6 6 TPR repeat TPR_17 PF13431.1 gi|147920898|ref|YP_685295.1| - 4.5e-55 179.3 9.9 2.9e-06 27.0 0.0 10.1 10 0 0 10 10 10 9 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147920898|ref|YP_685295.1| - 1.7e-44 149.6 17.5 2.4e-09 37.6 0.0 6.7 3 2 4 7 7 7 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147920898|ref|YP_685295.1| - 6.1e-41 135.1 17.9 5.2e-06 26.6 0.3 9.7 1 1 9 10 10 10 9 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147920898|ref|YP_685295.1| - 2.3e-38 127.0 6.0 0.00027 20.4 0.0 9.9 9 1 1 10 10 10 8 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147920898|ref|YP_685295.1| - 2.5e-33 114.2 7.8 1.2e-05 25.5 0.0 6.3 4 1 2 6 6 6 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147920898|ref|YP_685295.1| - 6.7e-31 106.0 27.1 1.7e-05 24.6 0.1 6.6 2 2 6 8 8 8 8 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147920898|ref|YP_685295.1| - 2.2e-24 85.0 15.6 2.2e-05 24.2 0.0 6.1 2 1 5 7 7 7 7 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147920898|ref|YP_685295.1| - 1.5e-23 81.5 9.0 0.001 19.3 0.1 8.7 9 0 0 9 9 9 4 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147920898|ref|YP_685295.1| - 2.4e-16 58.1 9.4 0.0057 16.3 0.1 9.3 8 1 2 10 10 10 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|147920898|ref|YP_685295.1| - 1.3e-14 54.0 6.6 0.0029 17.7 1.2 5.1 1 1 4 5 5 5 5 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.3 gi|147920898|ref|YP_685295.1| - 4.4e-13 48.8 0.4 0.00044 19.1 0.0 4.7 2 1 2 5 5 5 4 NMDA receptor-regulated protein 1 FAT PF02259.18 gi|147920898|ref|YP_685295.1| - 4e-05 22.7 0.2 0.18 10.7 0.6 4.3 1 1 1 2 2 2 1 FAT domain DUF3856 PF12968.2 gi|147920898|ref|YP_685295.1| - 7.9e-05 22.5 9.4 1.8 8.3 0.0 6.2 2 2 3 7 7 7 1 Domain of Unknown Function (DUF3856) Apc5 PF12862.2 gi|147920898|ref|YP_685295.1| - 0.00015 21.4 0.9 5.2 6.9 0.0 5.0 3 1 3 6 6 5 1 Anaphase-promoting complex subunit 5 Alkyl_sulf_dimr PF14863.1 gi|147920898|ref|YP_685295.1| - 0.00051 20.2 0.4 0.11 12.7 0.0 3.4 3 1 0 3 3 3 1 Alkyl sulfatase dimerisation TPR_20 PF14561.1 gi|147920898|ref|YP_685295.1| - 0.00063 19.8 0.8 15 5.8 0.0 4.7 4 1 1 5 5 4 0 Tetratricopeptide repeat MIT PF04212.13 gi|147920898|ref|YP_685295.1| - 0.0023 17.7 16.1 4.1 7.3 0.7 7.0 8 2 0 9 9 7 1 MIT (microtubule interacting and transport) domain BTAD PF03704.12 gi|147920898|ref|YP_685295.1| - 0.0024 18.2 8.2 0.027 14.7 0.1 4.4 2 2 3 5 5 5 1 Bacterial transcriptional activator domain TPR_3 PF07720.7 gi|147920898|ref|YP_685295.1| - 0.0079 15.9 1.3 28 4.6 0.1 4.3 4 0 0 4 4 3 0 Tetratricopeptide repeat DUF3808 PF10300.4 gi|147920898|ref|YP_685295.1| - 0.0092 14.5 1.2 0.73 8.3 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3808) TPR_4 PF07721.9 gi|147920898|ref|YP_685295.1| - 0.022 15.1 16.5 0.03 14.7 0.8 5.0 5 0 0 5 5 3 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.1 gi|147920898|ref|YP_685295.1| - 0.024 14.5 0.1 40 4.1 0.0 4.2 3 1 1 4 4 3 0 Fis1 C-terminal tetratricopeptide repeat TPR_21 PF09976.4 gi|147920898|ref|YP_685295.1| - 0.11 12.4 0.1 0.11 12.4 0.1 3.5 3 1 0 3 3 3 0 Tetratricopeptide repeat PPTA PF01239.17 gi|147920898|ref|YP_685295.1| - 0.19 11.1 1.3 2.5 7.6 0.0 3.4 4 0 0 4 4 3 0 Protein prenyltransferase alpha subunit repeat TPR_10 PF13374.1 gi|147920898|ref|YP_685295.1| - 5.2 7.1 18.0 3 7.9 0.0 6.1 8 0 0 8 8 7 0 Tetratricopeptide repeat Aminotran_4 PF01063.14 gi|147920899|ref|YP_685294.1| - 1.3e-53 181.8 0.0 1.6e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV Oxidored_q1 PF00361.15 gi|147920900|ref|YP_685293.1| - 1.6e-50 171.8 24.8 1.6e-50 171.8 17.2 2.7 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains HycI PF01750.13 gi|147920901|ref|YP_685292.1| - 2.1e-13 49.9 0.1 2.8e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease DUF1256 PF06866.6 gi|147920901|ref|YP_685292.1| - 0.13 11.4 0.0 0.28 10.3 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1256) Acylphosphatase PF00708.13 gi|147920902|ref|YP_685291.1| - 3.5e-27 94.3 0.1 3.8e-27 94.2 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.7 gi|147920902|ref|YP_685291.1| - 0.018 14.7 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD Gp_dh_C PF02800.15 gi|147920903|ref|YP_685290.1| - 4.2e-23 81.5 0.0 6.3e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|147920903|ref|YP_685290.1| - 5.9e-20 71.7 0.4 1.3e-19 70.5 0.3 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|147920903|ref|YP_685290.1| - 3.2e-09 36.7 0.3 9.5e-09 35.2 0.1 1.9 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|147920903|ref|YP_685290.1| - 0.00053 20.3 0.3 0.0025 18.2 0.1 2.1 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|147920903|ref|YP_685290.1| - 0.0011 18.1 0.1 0.42 9.7 0.0 2.5 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|147920903|ref|YP_685290.1| - 0.0015 17.5 0.1 0.0028 16.7 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|147920903|ref|YP_685290.1| - 0.0084 16.5 0.3 0.1 13.0 0.2 2.3 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|147920903|ref|YP_685290.1| - 0.018 15.5 0.9 0.26 11.7 0.0 2.6 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|147920903|ref|YP_685290.1| - 0.052 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF2085 PF09858.4 gi|147920904|ref|YP_685289.1| - 2.9e-30 104.2 0.5 5.3e-30 103.3 0.4 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) DUF3099 PF11298.3 gi|147920904|ref|YP_685289.1| - 7.7 6.3 6.2 0.57 9.9 0.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) DUF2085 PF09858.4 gi|147920905|ref|YP_685288.1| - 1.5e-38 130.7 1.9 2.9e-38 129.8 1.3 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) UPF0118 PF01594.11 gi|147920906|ref|YP_685287.1| - 6e-24 84.6 46.6 1.3e-23 83.5 32.3 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF20 UPF0118 PF01594.11 gi|147920907|ref|YP_685286.1| - 5.3e-25 88.1 38.3 8.4e-25 87.4 26.5 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 Peptidase_M32 PF02074.10 gi|147920908|ref|YP_685285.1| - 5.2e-164 546.5 0.0 5.8e-164 546.3 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Acetyltransf_9 PF13527.1 gi|147920909|ref|YP_685284.1| - 5.3e-16 58.6 0.0 6.7e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|147920909|ref|YP_685284.1| - 1.3e-11 44.3 0.0 2.5e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147920909|ref|YP_685284.1| - 2.7e-08 33.8 0.0 5.7e-08 32.8 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147920909|ref|YP_685284.1| - 4.7e-05 23.1 0.0 0.00014 21.6 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_10 PF13673.1 gi|147920909|ref|YP_685284.1| - 0.00017 21.6 0.0 0.00026 21.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147920909|ref|YP_685284.1| - 0.003 17.2 0.0 0.005 16.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Hexapep PF00132.19 gi|147920909|ref|YP_685284.1| - 0.083 12.4 0.4 0.15 11.6 0.3 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Acetyltransf_6 PF13480.1 gi|147920909|ref|YP_685284.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF89 PF01937.14 gi|147920910|ref|YP_685283.1| - 5.4e-58 196.4 0.0 6.2e-58 196.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 Pyr_redox PF00070.22 gi|147920910|ref|YP_685283.1| - 0.028 14.8 0.1 0.092 13.1 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UPF0150 PF03681.10 gi|147920910|ref|YP_685283.1| - 0.068 12.8 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Glycos_transf_1 PF00534.15 gi|147920911|ref|YP_685282.1| - 1.1e-33 116.0 0.0 1.6e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147920911|ref|YP_685282.1| - 2.5e-24 86.2 1.3 4.1e-24 85.5 0.4 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|147920911|ref|YP_685282.1| - 1.1e-17 64.4 0.0 8.5e-08 31.9 0.0 2.2 2 0 0 2 2 2 2 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|147920911|ref|YP_685282.1| - 2.1e-16 60.1 1.2 9.7e-16 57.9 0.8 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|147920911|ref|YP_685282.1| - 2.4e-16 60.0 0.0 4.3e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147920911|ref|YP_685282.1| - 1.5e-05 24.8 0.0 3.3e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|147920911|ref|YP_685282.1| - 0.0012 19.0 0.0 0.0027 17.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 He_PIG PF05345.7 gi|147920912|ref|YP_685281.1| - 0.33 11.0 4.6 1.6 8.8 0.2 3.4 4 0 0 4 4 4 0 Putative Ig domain Abhydrolase_6 PF12697.2 gi|147920913|ref|YP_685280.1| - 1.8e-40 139.2 5.4 2.1e-40 139.0 3.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|147920913|ref|YP_685280.1| - 2.7e-22 79.4 0.1 2.7e-13 50.0 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|147920913|ref|YP_685280.1| - 2.1e-17 63.2 0.2 4.3e-17 62.2 0.1 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|147920913|ref|YP_685280.1| - 1e-06 29.1 0.3 1.6e-06 28.5 0.2 1.6 1 1 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.3 gi|147920913|ref|YP_685280.1| - 1.8e-06 27.6 0.2 4e-06 26.5 0.2 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Ndr PF03096.9 gi|147920913|ref|YP_685280.1| - 0.015 13.7 0.0 0.043 12.2 0.0 1.7 2 0 0 2 2 2 0 Ndr family DUF1057 PF06342.7 gi|147920913|ref|YP_685280.1| - 0.021 13.6 0.0 0.031 13.1 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Peptidase_S9 PF00326.16 gi|147920913|ref|YP_685280.1| - 0.054 12.7 0.1 1.6 7.8 0.0 2.5 2 2 0 2 2 2 0 Prolyl oligopeptidase family GyrI-like PF06445.10 gi|147920915|ref|YP_685278.1| - 2e-21 76.6 0.2 2.9e-21 76.1 0.1 1.3 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cytochrom_D1 PF02239.11 gi|147920917|ref|YP_685276.1| - 4.2e-09 35.1 0.1 1.3e-05 23.6 0.0 2.4 1 1 1 2 2 2 2 Cytochrome D1 heme domain Lactonase PF10282.4 gi|147920917|ref|YP_685276.1| - 3.7e-06 26.2 0.0 0.024 13.7 0.0 3.5 1 1 4 5 5 5 4 Lactonase, 7-bladed beta-propeller PQQ_3 PF13570.1 gi|147920917|ref|YP_685276.1| - 5.4e-06 26.4 3.8 0.46 10.8 0.1 4.9 5 0 0 5 5 5 2 PQQ-like domain SGL PF08450.7 gi|147920917|ref|YP_685276.1| - 0.00011 21.6 0.3 0.55 9.5 0.1 3.6 1 1 0 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region DUF2233 PF09992.4 gi|147920917|ref|YP_685276.1| - 0.0022 18.0 0.3 0.16 11.9 0.0 3.3 2 1 0 3 3 3 1 Predicted periplasmic protein (DUF2233) PD40 PF07676.7 gi|147920917|ref|YP_685276.1| - 0.0037 16.8 1.0 8.1 6.2 0.0 5.2 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat NHL PF01436.16 gi|147920917|ref|YP_685276.1| - 0.014 15.2 2.5 0.2 11.7 0.0 3.6 4 0 0 4 4 4 0 NHL repeat SBP56 PF05694.6 gi|147920917|ref|YP_685276.1| - 0.015 13.7 0.3 10 4.4 0.0 3.4 2 1 0 3 3 3 0 56kDa selenium binding protein (SBP56) Beta_propel PF09826.4 gi|147920917|ref|YP_685276.1| - 0.15 10.4 0.0 0.6 8.3 0.0 1.8 2 1 0 2 2 2 0 Beta propeller domain Peptidase_M29 PF02073.10 gi|147920918|ref|YP_685275.1| - 1.2e-38 132.9 0.0 2e-38 132.2 0.0 1.3 1 1 0 1 1 1 1 Thermophilic metalloprotease (M29) ATE_C PF04377.10 gi|147920918|ref|YP_685275.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Arginine-tRNA-protein transferase, C terminus Cation_ATPase_C PF00689.16 gi|147920919|ref|YP_685274.1| - 0.044 13.3 0.1 0.059 12.8 0.0 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF650 PF04894.7 gi|147920920|ref|YP_685273.1| - 2.8e-98 328.7 0.0 3.7e-98 328.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|147920920|ref|YP_685273.1| - 4e-34 116.5 0.0 6.3e-34 115.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) HupF_HypC PF01455.13 gi|147920922|ref|YP_685271.1| - 1.6e-23 82.4 0.5 1.9e-23 82.1 0.3 1.1 1 0 0 1 1 1 1 HupF/HypC family HypA PF01155.14 gi|147920923|ref|YP_685270.1| - 2e-29 101.5 1.1 2.2e-29 101.3 0.7 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family AIRS_C PF02769.17 gi|147920924|ref|YP_685269.1| - 7.5e-23 81.2 1.2 1.1e-22 80.6 0.9 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|147920924|ref|YP_685269.1| - 5.1e-15 55.4 0.3 1.1e-14 54.4 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF46 PF01864.12 gi|147920925|ref|YP_685268.1| - 1.1e-46 158.9 3.4 1.2e-46 158.7 2.3 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|147920925|ref|YP_685268.1| - 1.5e-05 24.8 1.8 1.5e-05 24.8 1.2 2.0 1 1 1 2 2 2 1 Cytidylyltransferase family DUF204 PF02659.10 gi|147920925|ref|YP_685268.1| - 0.22 11.6 6.0 1.5 9.0 0.1 3.1 2 1 0 2 2 2 0 Domain of unknown function DUF Pribosyltran PF00156.22 gi|147920926|ref|YP_685267.1| - 3.8e-07 29.8 4.6 4.9e-06 26.2 3.2 2.1 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|147920926|ref|YP_685267.1| - 0.056 12.6 0.0 0.071 12.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase DUF1724 PF08350.5 gi|147920927|ref|YP_685266.1| - 7.4e-18 63.8 0.3 1.6e-17 62.7 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_20 PF12840.2 gi|147920927|ref|YP_685266.1| - 7e-09 35.3 0.5 1.5e-08 34.2 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|147920927|ref|YP_685266.1| - 1e-05 25.0 0.1 2.3e-05 23.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|147920927|ref|YP_685266.1| - 0.00011 22.3 0.2 0.0016 18.6 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|147920927|ref|YP_685266.1| - 0.00075 18.8 2.9 0.012 15.0 0.0 3.2 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147920927|ref|YP_685266.1| - 0.0023 17.5 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|147920927|ref|YP_685266.1| - 0.0034 17.1 0.3 0.024 14.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|147920927|ref|YP_685266.1| - 0.024 14.6 0.0 0.34 10.9 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain Phage_tail_2 PF06199.6 gi|147920927|ref|YP_685266.1| - 0.05 13.6 0.4 0.25 11.4 0.1 1.9 1 1 1 2 2 2 0 Phage major tail protein 2 HxlR PF01638.12 gi|147920927|ref|YP_685266.1| - 0.071 12.7 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TrmB PF01978.14 gi|147920927|ref|YP_685266.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GARS_A PF01071.14 gi|147920928|ref|YP_685265.1| - 8.2e-60 201.7 0.3 1.1e-59 201.2 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|147920928|ref|YP_685265.1| - 9.9e-34 115.7 0.1 2.1e-33 114.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|147920928|ref|YP_685265.1| - 2.8e-20 72.2 0.1 2.7e-19 69.1 0.0 2.4 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|147920928|ref|YP_685265.1| - 1.3e-14 54.3 0.0 4e-14 52.7 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|147920928|ref|YP_685265.1| - 3.7e-06 25.9 0.0 7.6e-06 24.8 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|147920928|ref|YP_685265.1| - 0.00014 21.8 0.0 0.00028 20.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|147920928|ref|YP_685265.1| - 0.0037 16.5 0.0 0.028 13.6 0.0 2.3 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|147920928|ref|YP_685265.1| - 0.026 13.8 0.0 0.061 12.7 0.0 1.5 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus DUF3182 PF11379.3 gi|147920928|ref|YP_685265.1| - 0.035 12.7 0.0 0.056 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) ATPgrasp_ST PF14397.1 gi|147920928|ref|YP_685265.1| - 0.038 13.0 0.0 0.087 11.9 0.0 1.5 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.11 gi|147920928|ref|YP_685265.1| - 0.099 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_chain PF00289.17 gi|147920928|ref|YP_685265.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain HATPase_c PF02518.21 gi|147920929|ref|YP_685264.1| - 1.8e-31 108.1 0.0 5.4e-31 106.5 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|147920929|ref|YP_685264.1| - 7.1e-17 61.1 0.0 1.9e-16 59.7 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|147920929|ref|YP_685264.1| - 9.6e-13 48.3 0.0 1.7e-12 47.5 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|147920929|ref|YP_685264.1| - 7.5e-11 42.7 0.0 2.3e-10 41.1 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|147920929|ref|YP_685264.1| - 1.2e-10 41.6 0.0 2.2e-10 40.8 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|147920929|ref|YP_685264.1| - 0.004 16.8 0.0 0.0081 15.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|147920929|ref|YP_685264.1| - 0.017 14.8 0.0 0.054 13.2 0.0 1.9 1 0 0 1 1 1 0 GHKL domain PAS_4 PF08448.5 gi|147920929|ref|YP_685264.1| - 0.041 13.9 0.0 0.49 10.4 0.0 2.4 2 0 0 2 2 2 0 PAS fold PAS_8 PF13188.1 gi|147920929|ref|YP_685264.1| - 0.076 12.9 0.0 0.51 10.2 0.0 2.3 2 0 0 2 2 2 0 PAS domain HAD_2 PF13419.1 gi|147920930|ref|YP_685263.1| - 5.3e-28 98.4 0.0 7.1e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|147920930|ref|YP_685263.1| - 1.3e-16 61.6 0.2 2e-16 61.0 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|147920930|ref|YP_685263.1| - 1.2e-06 28.1 0.1 2.9e-05 23.7 0.0 2.3 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|147920930|ref|YP_685263.1| - 2.7e-06 27.7 0.0 5.4e-06 26.6 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|147920930|ref|YP_685263.1| - 0.00064 19.5 0.7 0.0098 15.7 0.3 2.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|147920930|ref|YP_685263.1| - 0.0015 18.0 0.0 0.0027 17.2 0.0 1.5 1 1 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) TPR_12 PF13424.1 gi|147920931|ref|YP_685262.1| - 5.5e-13 48.6 9.8 1.1e-06 28.5 0.4 4.5 2 1 3 5 5 5 4 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147920931|ref|YP_685262.1| - 1.1e-11 44.2 7.0 3.8e-06 26.4 0.0 3.6 3 1 0 3 3 3 2 TPR repeat TPR_2 PF07719.12 gi|147920931|ref|YP_685262.1| - 1.5e-09 37.0 9.3 0.045 13.6 0.1 6.2 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147920931|ref|YP_685262.1| - 2.1e-08 34.6 8.6 0.0091 16.6 0.2 4.2 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147920931|ref|YP_685262.1| - 1.2e-07 30.9 1.4 0.093 12.5 0.1 5.5 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147920931|ref|YP_685262.1| - 2.8e-07 29.8 7.6 0.24 11.0 0.3 5.5 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147920931|ref|YP_685262.1| - 3.2e-05 24.1 11.2 8.6 7.3 0.4 6.4 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147920931|ref|YP_685262.1| - 0.00016 21.9 6.1 2.3 8.8 0.1 6.4 6 0 0 6 6 6 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147920931|ref|YP_685262.1| - 0.00025 20.6 2.0 4.5 7.3 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_21 PF09976.4 gi|147920931|ref|YP_685262.1| - 0.0069 16.3 0.4 1.2 9.1 0.2 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat Foie-gras_1 PF11817.3 gi|147920931|ref|YP_685262.1| - 0.0076 15.7 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Foie gras liver health family 1 TPR_19 PF14559.1 gi|147920931|ref|YP_685262.1| - 0.024 14.9 5.9 0.63 10.4 0.1 3.6 3 1 1 4 4 3 0 Tetratricopeptide repeat Sel1 PF08238.7 gi|147920931|ref|YP_685262.1| - 0.059 14.0 1.2 2.3 8.9 0.0 3.2 2 0 0 2 2 2 0 Sel1 repeat Rapsyn_N PF10579.4 gi|147920931|ref|YP_685262.1| - 0.11 12.3 0.0 2.5 7.9 0.0 2.8 3 0 0 3 3 3 0 Rapsyn N-terminal myristoylation and linker region Fis1_TPR_C PF14853.1 gi|147920931|ref|YP_685262.1| - 0.45 10.4 2.8 1.7 8.5 0.0 3.4 4 0 0 4 4 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_10 PF13374.1 gi|147920931|ref|YP_685262.1| - 1.9 8.5 16.6 0.3 11.0 0.6 4.7 5 0 0 5 5 4 0 Tetratricopeptide repeat Chorismate_synt PF01264.16 gi|147920932|ref|YP_685261.1| - 5.4e-149 495.3 3.4 6.1e-149 495.2 2.3 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|147920933|ref|YP_685260.1| - 1.7e-112 375.9 0.0 2e-112 375.7 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GYD PF08734.6 gi|147920933|ref|YP_685260.1| - 0.0082 15.8 0.4 3.1 7.5 0.0 3.0 3 1 0 3 3 3 2 GYD domain HTH_39 PF14090.1 gi|147920933|ref|YP_685260.1| - 0.073 12.5 0.2 1.2 8.6 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Fig1 PF12351.3 gi|147920934|ref|YP_685259.1| - 0.36 10.6 10.0 0.13 12.1 2.8 2.2 1 1 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 COX15-CtaA PF02628.10 gi|147920934|ref|YP_685259.1| - 2.4 6.9 11.7 5.8 5.6 8.1 1.8 1 1 0 1 1 1 0 Cytochrome oxidase assembly protein DUF998 PF06197.8 gi|147920936|ref|YP_685257.1| - 7e-05 22.2 23.8 9.9e-05 21.7 16.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) HTH_5 PF01022.15 gi|147920937|ref|YP_685255.1| - 0.0075 15.9 0.2 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|147920937|ref|YP_685255.1| - 0.022 14.4 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|147920937|ref|YP_685255.1| - 0.024 14.2 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|147920937|ref|YP_685255.1| - 0.04 13.3 0.1 0.065 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|147920937|ref|YP_685255.1| - 0.06 13.0 0.1 0.11 12.1 0.0 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|147920937|ref|YP_685255.1| - 0.067 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|147920937|ref|YP_685255.1| - 0.082 12.4 0.0 0.11 12.0 0.0 1.3 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) RNA_pol_Rpc34 PF05158.7 gi|147920937|ref|YP_685255.1| - 0.12 11.5 0.1 0.21 10.7 0.0 1.4 1 1 1 2 2 2 0 RNA polymerase Rpc34 subunit Pyr_redox_2 PF07992.9 gi|147920938|ref|YP_685254.1| - 2.8e-32 112.2 1.2 6.2e-31 107.8 0.4 3.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|147920938|ref|YP_685254.1| - 3.5e-23 81.8 0.5 3.5e-18 65.7 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|147920938|ref|YP_685254.1| - 2.9e-14 52.7 6.1 0.0031 16.4 0.2 4.1 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|147920938|ref|YP_685254.1| - 1.1e-13 51.6 0.0 7.2e-10 39.2 0.0 3.1 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|147920938|ref|YP_685254.1| - 1.5e-11 43.8 0.8 0.00023 20.1 0.0 3.3 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_dim PF02852.17 gi|147920938|ref|YP_685254.1| - 1e-09 38.4 0.0 1.9e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.9 gi|147920938|ref|YP_685254.1| - 1e-07 30.7 0.2 0.086 11.2 0.0 3.3 3 0 0 3 3 3 3 HI0933-like protein NAD_binding_7 PF13241.1 gi|147920938|ref|YP_685254.1| - 1.3e-07 31.7 0.1 0.00059 20.0 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Thi4 PF01946.12 gi|147920938|ref|YP_685254.1| - 1.3e-06 27.7 0.1 0.0096 15.0 0.0 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_9 PF13454.1 gi|147920938|ref|YP_685254.1| - 2e-06 27.6 3.6 0.14 11.8 0.0 3.9 4 0 0 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|147920938|ref|YP_685254.1| - 5.7e-06 26.2 0.3 0.009 16.0 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|147920938|ref|YP_685254.1| - 6e-05 22.0 2.0 0.97 8.2 0.1 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|147920938|ref|YP_685254.1| - 6e-05 22.2 0.9 0.0038 16.3 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain K_oxygenase PF13434.1 gi|147920938|ref|YP_685254.1| - 8.6e-05 21.6 0.0 0.0076 15.2 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|147920938|ref|YP_685254.1| - 0.00066 18.6 2.2 1.2 7.9 0.0 3.5 4 0 0 4 4 4 1 Lycopene cyclase protein Amino_oxidase PF01593.19 gi|147920938|ref|YP_685254.1| - 0.0016 17.6 1.3 0.71 8.8 0.0 2.5 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase adh_short PF00106.20 gi|147920938|ref|YP_685254.1| - 0.0025 17.7 1.2 0.0045 16.9 0.2 1.8 2 0 0 2 2 2 1 short chain dehydrogenase AlaDh_PNT_C PF01262.16 gi|147920938|ref|YP_685254.1| - 0.003 17.1 1.6 0.32 10.5 0.0 2.8 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|147920938|ref|YP_685254.1| - 0.0049 16.9 0.4 1.9 8.6 0.0 2.7 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.9 gi|147920938|ref|YP_685254.1| - 0.0095 14.6 1.3 0.65 8.5 0.0 3.0 4 0 0 4 4 4 1 Tryptophan halogenase TrkA_N PF02254.13 gi|147920938|ref|YP_685254.1| - 0.015 15.2 0.0 0.68 9.9 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|147920938|ref|YP_685254.1| - 0.03 13.9 0.4 0.063 12.9 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|147920938|ref|YP_685254.1| - 0.077 12.8 0.2 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 ThiF family DUF1724 PF08350.5 gi|147920940|ref|YP_685252.1| - 7.5e-20 70.2 0.5 1.5e-19 69.2 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|147920940|ref|YP_685252.1| - 6.8e-05 22.5 0.1 0.00017 21.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|147920940|ref|YP_685252.1| - 0.00021 21.5 0.1 0.0005 20.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|147920940|ref|YP_685252.1| - 0.0011 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147920940|ref|YP_685252.1| - 0.0013 18.4 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DDRGK PF09756.4 gi|147920940|ref|YP_685252.1| - 0.0051 16.2 0.0 0.0084 15.5 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain MarR_2 PF12802.2 gi|147920940|ref|YP_685252.1| - 0.0075 15.9 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|147920940|ref|YP_685252.1| - 0.012 15.3 0.0 0.03 14.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|147920940|ref|YP_685252.1| - 0.014 14.9 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 HTH domain UbiA PF01040.13 gi|147920941|ref|YP_685251.1| - 1.9e-25 89.5 17.9 2.2e-25 89.3 12.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1724 PF08350.5 gi|147920942|ref|YP_685250.1| - 9.1e-20 69.9 0.2 5.6e-19 67.4 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1724) HTH_45 PF14947.1 gi|147920942|ref|YP_685250.1| - 0.00057 19.6 0.2 0.0025 17.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix HemN_C PF06969.11 gi|147920942|ref|YP_685250.1| - 0.011 15.7 0.0 0.033 14.2 0.0 1.8 2 0 0 2 2 2 0 HemN C-terminal domain HTH_11 PF08279.7 gi|147920942|ref|YP_685250.1| - 0.056 13.0 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 HTH domain Chordopox_E11 PF06138.7 gi|147920942|ref|YP_685250.1| - 0.088 12.9 0.3 0.19 11.8 0.2 1.6 1 1 0 1 1 1 0 Chordopoxvirus E11 protein ABC2_membrane_2 PF12679.2 gi|147920944|ref|YP_685248.1| - 8.9e-17 60.8 25.8 3.8e-16 58.7 17.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920944|ref|YP_685248.1| - 6.1e-09 35.3 39.8 8.5e-09 34.9 26.1 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein Cation_ATPase_C PF00689.16 gi|147920944|ref|YP_685248.1| - 0.49 9.9 19.9 0.76 9.2 8.6 2.6 1 1 1 2 2 2 0 Cation transporting ATPase, C-terminus ABC2_membrane_2 PF12679.2 gi|147920945|ref|YP_685247.1| - 1.1e-16 60.5 25.4 1.4e-16 60.1 17.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147920945|ref|YP_685247.1| - 1.2e-12 47.5 37.2 1.7e-12 47.0 25.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147920945|ref|YP_685247.1| - 0.14 11.1 39.1 0.0028 16.7 21.9 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein RCC1 PF00415.13 gi|147920946|ref|YP_685246.1| - 2.9e-43 145.8 36.1 3.5e-09 36.7 0.0 9.1 8 3 0 8 8 8 6 Regulator of chromosome condensation (RCC1) repeat RCC1_2 PF13540.1 gi|147920946|ref|YP_685246.1| - 1.7e-38 129.4 32.3 1.6e-08 33.9 1.0 7.3 7 0 0 7 7 7 7 Regulator of chromosome condensation (RCC1) repeat Reg_prop PF07494.6 gi|147920946|ref|YP_685246.1| - 0.037 14.0 4.9 73 3.9 0.0 5.8 6 0 0 6 6 6 0 Two component regulator propeller IMP_cyclohyd PF07826.6 gi|147920947|ref|YP_685245.1| - 3.4e-64 215.8 0.3 4.1e-64 215.6 0.2 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein TPP_enzyme_C PF02775.16 gi|147920948|ref|YP_685244.1| - 9.6e-27 93.4 0.1 1.4e-26 92.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|147920949|ref|YP_685243.1| - 1e-70 237.8 3.3 1.3e-70 237.4 2.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|147920949|ref|YP_685243.1| - 1.1e-08 35.0 0.1 2.3e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|147920950|ref|YP_685242.1| - 3.9e-15 54.7 19.3 5.7e-08 32.0 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920950|ref|YP_685242.1| - 5.4e-12 45.3 14.1 6.8e-12 45.0 9.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147920950|ref|YP_685242.1| - 3.8e-11 43.1 28.4 5.8e-08 32.9 12.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147920950|ref|YP_685242.1| - 4.9e-10 38.8 16.4 3.8e-06 26.5 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147920950|ref|YP_685242.1| - 2.3e-09 36.5 16.9 5.1e-06 26.0 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147920950|ref|YP_685242.1| - 9.7e-09 34.9 30.3 3.5e-07 29.9 12.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920950|ref|YP_685242.1| - 1.4e-07 31.6 19.2 2.2e-07 31.0 13.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920950|ref|YP_685242.1| - 8.8e-07 29.5 16.0 0.0005 20.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|147920950|ref|YP_685242.1| - 5.2e-06 26.3 21.4 9.4 6.8 14.8 2.6 1 1 0 1 1 1 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147920950|ref|YP_685242.1| - 0.0002 21.6 1.7 0.0002 21.6 1.2 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147920950|ref|YP_685242.1| - 0.00031 20.6 17.4 0.0015 18.5 12.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147920950|ref|YP_685242.1| - 0.0007 19.9 20.0 0.071 13.7 3.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147920950|ref|YP_685242.1| - 0.00098 19.6 16.5 0.085 13.4 3.4 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|147920950|ref|YP_685242.1| - 0.0049 17.1 16.7 0.019 15.3 1.8 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147920950|ref|YP_685242.1| - 0.062 13.7 14.5 0.13 12.6 1.9 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain POR PF01558.13 gi|147920951|ref|YP_685241.1| - 1.6e-38 132.3 0.5 1.8e-38 132.1 0.4 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase HATPase_c PF02518.21 gi|147920952|ref|YP_685240.1| - 4.8e-20 71.3 0.0 1.2e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147920952|ref|YP_685240.1| - 8.9e-13 48.5 0.0 5.2e-12 46.0 0.0 2.2 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|147920952|ref|YP_685240.1| - 1e-11 44.8 0.0 2.2e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|147920952|ref|YP_685240.1| - 3.4e-09 36.4 0.0 1.1e-08 34.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|147920952|ref|YP_685240.1| - 3.5e-06 26.6 0.0 8.3e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|147920952|ref|YP_685240.1| - 1.6e-05 24.7 0.0 3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147920952|ref|YP_685240.1| - 0.00025 20.6 0.0 0.00068 19.3 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|147920952|ref|YP_685240.1| - 0.029 14.3 0.0 0.14 12.1 0.0 2.1 1 1 0 1 1 1 0 PAS fold DUF615 PF04751.9 gi|147920952|ref|YP_685240.1| - 0.058 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF615) PAS_9 PF13426.1 gi|147920953|ref|YP_685239.1| - 6.9e-30 103.4 0.0 5.6e-16 58.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|147920953|ref|YP_685239.1| - 4.3e-22 78.0 0.0 4.2e-13 49.0 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|147920953|ref|YP_685239.1| - 4.5e-19 68.2 0.0 1.3e-18 66.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|147920953|ref|YP_685239.1| - 6.9e-19 66.9 0.0 2.7e-08 33.3 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|147920953|ref|YP_685239.1| - 1e-15 57.7 0.0 1.7e-08 34.4 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c_2 PF13581.1 gi|147920953|ref|YP_685239.1| - 1.4e-07 31.3 0.0 4.1e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|147920953|ref|YP_685239.1| - 1.2e-05 25.2 0.1 0.00073 19.5 0.0 3.1 3 1 0 3 3 3 1 PAS fold PAS_3 PF08447.6 gi|147920953|ref|YP_685239.1| - 0.0024 17.9 0.2 0.86 9.7 0.0 3.1 3 1 0 3 3 2 1 PAS fold DUF4118 PF13493.1 gi|147920953|ref|YP_685239.1| - 0.0054 16.9 11.9 0.01 16.0 8.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4118) PAS_11 PF14598.1 gi|147920953|ref|YP_685239.1| - 0.0062 16.4 0.1 2.3 8.2 0.0 3.2 3 0 0 3 3 3 1 PAS domain HisKA PF00512.20 gi|147920953|ref|YP_685239.1| - 0.051 13.5 1.7 5 7.1 0.4 2.6 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|147920953|ref|YP_685239.1| - 0.057 13.6 0.0 2.3 8.5 0.0 3.0 2 1 0 2 2 2 0 PAS domain Oxidored_q6 PF01058.17 gi|147920954|ref|YP_685238.1| - 1.2e-27 96.0 0.3 1.4e-27 95.8 0.2 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4_7 PF12838.2 gi|147920955|ref|YP_685237.1| - 7.3e-11 42.2 31.2 7.9e-10 38.9 8.4 2.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147920955|ref|YP_685237.1| - 2.1e-10 39.7 11.4 4.1e-07 29.3 1.7 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147920955|ref|YP_685237.1| - 3.8e-09 36.0 21.3 7e-07 28.8 2.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147920955|ref|YP_685237.1| - 4.3e-09 36.4 9.9 4.3e-09 36.4 6.8 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147920955|ref|YP_685237.1| - 8.3e-08 31.9 7.6 8.3e-08 31.9 5.3 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147920955|ref|YP_685237.1| - 3.8e-07 29.8 12.0 3.8e-07 29.8 8.3 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920955|ref|YP_685237.1| - 5.2e-07 30.3 14.6 0.00037 21.1 4.3 3.2 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|147920955|ref|YP_685237.1| - 5.3e-06 26.8 14.6 0.00059 20.3 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|147920955|ref|YP_685237.1| - 9.9e-06 25.4 19.7 2.1e-05 24.4 8.2 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147920955|ref|YP_685237.1| - 8.5e-05 22.2 23.9 0.001 18.8 2.4 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147920955|ref|YP_685237.1| - 0.00037 20.7 19.2 0.039 14.3 1.0 3.8 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920955|ref|YP_685237.1| - 0.0048 17.1 1.5 0.0048 17.1 1.0 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147920955|ref|YP_685237.1| - 0.0058 17.0 23.2 0.11 12.9 2.8 3.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147920955|ref|YP_685237.1| - 0.036 14.6 5.3 0.036 14.6 3.7 3.1 4 0 0 4 4 2 0 4Fe-4S binding domain zf-ribbon_3 PF13248.1 gi|147920955|ref|YP_685237.1| - 0.11 11.7 7.4 5.9 6.2 0.0 3.6 3 0 0 3 3 3 0 zinc-ribbon domain Fer4_11 PF13247.1 gi|147920955|ref|YP_685237.1| - 0.74 9.7 8.4 0.086 12.7 1.9 2.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain A2L_zn_ribbon PF08792.5 gi|147920955|ref|YP_685237.1| - 3.5 7.2 11.5 18 4.9 0.6 3.5 3 0 0 3 3 3 0 A2L zinc ribbon domain NADHdh PF00146.16 gi|147920956|ref|YP_685236.1| - 2.6e-32 112.1 16.0 3.5e-32 111.7 11.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.14 gi|147920957|ref|YP_685235.1| - 4.8e-41 140.5 0.0 1.4e-30 106.2 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|147920957|ref|YP_685235.1| - 5.1e-22 78.0 0.0 7.4e-21 74.3 0.0 2.2 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|147920957|ref|YP_685235.1| - 8.8e-09 34.6 2.3 1.7e-08 33.7 0.3 2.3 2 1 0 2 2 2 1 Nickel-dependent hydrogenase CCG PF02754.11 gi|147920958|ref|YP_685234.1| - 1.7e-23 82.4 0.2 4e-12 45.9 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Asp_Glu_race PF01177.17 gi|147920958|ref|YP_685234.1| - 0.027 14.3 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase Fer4_11 PF13247.1 gi|147920959|ref|YP_685232.1| - 1.8e-20 72.6 22.5 3.1e-17 62.2 11.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147920959|ref|YP_685232.1| - 3e-11 42.6 39.7 4.3e-05 23.2 0.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147920959|ref|YP_685232.1| - 2.1e-10 39.9 30.1 1e-05 25.1 1.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147920959|ref|YP_685232.1| - 5e-10 39.6 38.0 2.7e-05 24.4 11.5 3.6 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147920959|ref|YP_685232.1| - 1.2e-08 34.9 41.6 0.0056 17.1 5.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4 PF00037.22 gi|147920959|ref|YP_685232.1| - 4.8e-08 32.2 9.9 3.6e-05 23.1 2.0 5.0 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147920959|ref|YP_685232.1| - 5.5e-08 32.4 37.3 0.0001 22.0 8.2 3.3 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920959|ref|YP_685232.1| - 3.5e-07 30.3 38.7 0.00017 21.8 10.9 3.3 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920959|ref|YP_685232.1| - 4.2e-07 29.7 33.3 0.0057 16.8 1.1 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920959|ref|YP_685232.1| - 8.6e-05 22.3 34.4 0.0058 16.4 9.0 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147920959|ref|YP_685232.1| - 0.0022 17.9 36.7 0.018 15.0 10.7 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920959|ref|YP_685232.1| - 0.015 15.6 3.0 0.015 15.6 2.1 4.6 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147920959|ref|YP_685232.1| - 0.018 15.5 1.1 0.018 15.5 0.8 4.0 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|147920959|ref|YP_685232.1| - 0.06 13.7 38.4 0.46 10.8 2.1 4.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920959|ref|YP_685232.1| - 0.59 10.9 42.1 3.4 8.4 1.6 4.9 3 2 2 5 5 5 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|147920960|ref|YP_685231.1| - 4.1e-13 48.3 15.1 7.2e-08 31.7 1.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147920960|ref|YP_685231.1| - 4.9e-12 45.4 21.6 5.6e-09 35.6 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147920960|ref|YP_685231.1| - 1.5e-09 37.9 11.3 2.1e-09 37.5 7.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147920960|ref|YP_685231.1| - 2.9e-09 37.1 12.9 3.6e-09 36.8 8.4 1.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147920960|ref|YP_685231.1| - 7.6e-09 35.0 16.0 5.2e-05 22.9 2.0 2.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147920960|ref|YP_685231.1| - 1.4e-08 34.1 13.1 0.00021 21.0 1.8 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147920960|ref|YP_685231.1| - 1.7e-08 34.1 13.8 1.8e-08 34.1 9.0 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147920960|ref|YP_685231.1| - 2.4e-07 31.4 7.9 0.00092 19.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|147920960|ref|YP_685231.1| - 6.8e-07 29.7 10.1 0.00017 22.0 0.5 2.3 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|147920960|ref|YP_685231.1| - 1.6e-06 28.0 24.2 4.1e-05 23.5 9.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147920960|ref|YP_685231.1| - 2.3e-05 24.7 11.1 0.0034 17.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147920960|ref|YP_685231.1| - 2.6e-05 24.2 15.3 0.0072 16.5 1.8 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147920960|ref|YP_685231.1| - 4.9e-05 23.6 13.8 0.013 15.8 1.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147920960|ref|YP_685231.1| - 5.7e-05 23.4 12.7 0.0073 16.6 8.8 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|147920960|ref|YP_685231.1| - 0.016 15.0 7.5 0.24 11.3 5.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|147920960|ref|YP_685231.1| - 0.1 12.4 5.8 0.16 11.7 4.0 1.3 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_3 PF12798.2 gi|147920960|ref|YP_685231.1| - 0.33 11.6 21.1 0.21 12.2 3.0 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Ubiquitin_3 PF14836.1 gi|147920961|ref|YP_685230.1| - 0.022 14.4 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin-like domain V4R PF02830.13 gi|147920961|ref|YP_685230.1| - 0.035 13.9 0.0 0.061 13.1 0.0 1.4 1 0 0 1 1 1 0 V4R domain ATC_hydrolase PF14196.1 gi|147920961|ref|YP_685230.1| - 0.059 13.7 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Oxidored_q6 PF01058.17 gi|147920962|ref|YP_685229.1| - 6.4e-31 106.6 0.0 1.8e-30 105.2 0.0 1.7 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit A2L_zn_ribbon PF08792.5 gi|147920962|ref|YP_685229.1| - 3.5 7.2 8.0 0.6 9.6 0.2 2.8 3 0 0 3 3 3 0 A2L zinc ribbon domain NiFeSe_Hases PF00374.14 gi|147920963|ref|YP_685228.1| - 2.5e-33 115.6 0.0 1.4e-18 67.0 0.0 2.7 1 1 1 3 3 3 2 Nickel-dependent hydrogenase Robl_LC7 PF03259.12 gi|147920964|ref|YP_685227.1| - 1.1e-12 47.3 0.8 1.4e-12 47.0 0.6 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|147920964|ref|YP_685227.1| - 0.0011 18.6 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF2173 PF09941.4 gi|147920964|ref|YP_685227.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) Robl_LC7 PF03259.12 gi|147920965|ref|YP_685226.1| - 2.3e-07 30.2 0.0 5.6e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|147920965|ref|YP_685226.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Mitogen-activated protein kinase kinase 1 interacting Ribosomal_60s PF00428.14 gi|147920965|ref|YP_685226.1| - 0.19 12.1 2.1 0.51 10.7 1.4 1.7 2 0 0 2 2 2 0 60s Acidic ribosomal protein DUF2360 PF10152.4 gi|147920966|ref|YP_685225.1| - 1.4 9.2 5.4 5.9 7.1 0.1 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein (DUF2360) CbiA PF01656.18 gi|147920968|ref|YP_685223.1| - 3.1e-26 92.0 1.5 3.9e-26 91.6 1.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|147920968|ref|YP_685223.1| - 3.1e-15 56.1 1.3 5.4e-10 38.9 0.0 2.0 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|147920968|ref|YP_685223.1| - 5.8e-13 49.0 0.0 8e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|147920968|ref|YP_685223.1| - 5.7e-07 29.1 0.0 1.3e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|147920968|ref|YP_685223.1| - 1.5e-06 27.4 0.1 3.9e-06 26.1 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.4 gi|147920968|ref|YP_685223.1| - 0.00028 20.6 0.1 0.00067 19.4 0.1 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|147920968|ref|YP_685223.1| - 0.00064 19.3 0.1 0.00064 19.3 0.1 1.7 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|147920968|ref|YP_685223.1| - 0.0014 17.7 0.9 0.0014 17.7 0.6 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.6 gi|147920968|ref|YP_685223.1| - 0.015 14.4 0.6 0.028 13.5 0.4 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_25 PF13481.1 gi|147920968|ref|YP_685223.1| - 0.029 13.7 0.2 0.064 12.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain HAMP PF00672.20 gi|147920969|ref|YP_685222.1| - 0.0025 17.9 0.2 0.0032 17.6 0.1 1.1 1 0 0 1 1 1 1 HAMP domain DUF1049 PF06305.6 gi|147920969|ref|YP_685222.1| - 0.0067 15.8 0.3 0.0096 15.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1049) DUF2304 PF10066.4 gi|147920969|ref|YP_685222.1| - 0.016 15.0 0.7 0.02 14.7 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF2721 PF11026.3 gi|147920969|ref|YP_685222.1| - 0.025 14.1 0.6 0.036 13.6 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) CCDC155 PF14662.1 gi|147920969|ref|YP_685222.1| - 0.036 13.6 0.3 0.043 13.4 0.2 1.0 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 PgaD PF13994.1 gi|147920969|ref|YP_685222.1| - 0.069 12.6 0.1 0.084 12.3 0.1 1.1 1 0 0 1 1 1 0 PgaD-like protein DUF4446 PF14584.1 gi|147920969|ref|YP_685222.1| - 0.077 12.8 0.8 0.093 12.5 0.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF2681 PF10883.3 gi|147920969|ref|YP_685222.1| - 0.084 13.0 0.2 0.1 12.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) DUF2205 PF10224.4 gi|147920969|ref|YP_685222.1| - 0.12 11.9 0.4 0.15 11.6 0.3 1.2 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) OsmC PF02566.14 gi|147920969|ref|YP_685222.1| - 0.12 12.5 0.1 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 OsmC-like protein N_methyl_3 PF13633.1 gi|147920969|ref|YP_685222.1| - 0.33 10.9 2.7 0.55 10.2 1.9 1.4 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation site Syndecan PF01034.15 gi|147920969|ref|YP_685222.1| - 0.35 10.5 1.5 0.49 10.0 1.1 1.2 1 0 0 1 1 1 0 Syndecan domain NYN PF01936.13 gi|147920970|ref|YP_685221.1| - 1.5e-28 99.9 0.0 2.4e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 NYN domain OST-HTH PF12872.2 gi|147920970|ref|YP_685221.1| - 3.4e-13 49.2 0.1 1e-12 47.6 0.1 1.8 2 0 0 2 2 2 1 OST-HTH/LOTUS domain Tub_2 PF04525.7 gi|147920971|ref|YP_685219.1| - 6.2e-05 22.4 0.1 0.011 15.1 0.0 2.3 1 1 1 2 2 2 2 Tubby C 2 FAM91_N PF14647.1 gi|147920971|ref|YP_685219.1| - 0.089 11.8 0.0 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 FAM91 N-terminus CofC PF01983.11 gi|147920972|ref|YP_685218.1| - 7.9e-51 172.0 0.1 9.7e-51 171.7 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|147920972|ref|YP_685218.1| - 0.012 15.7 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Glyco_trans_4_4 PF13579.1 gi|147920972|ref|YP_685218.1| - 0.092 12.8 0.0 0.15 12.2 0.0 1.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Radical_SAM PF04055.16 gi|147920974|ref|YP_685216.1| - 7e-16 58.8 0.0 1.5e-14 54.5 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|147920975|ref|YP_685215.1| - 5.9e-18 65.5 0.1 9.8e-18 64.8 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|147920976|ref|YP_685214.1| - 8.9e-18 65.0 0.1 5.1e-17 62.5 0.1 2.0 2 0 0 2 2 2 1 Radical SAM superfamily SinI PF08671.5 gi|147920976|ref|YP_685214.1| - 0.01 15.2 0.3 0.18 11.2 0.0 3.0 3 0 0 3 3 3 0 Anti-repressor SinI GPI2 PF06432.6 gi|147920977|ref|YP_685213.1| - 0.09 12.1 4.3 0.13 11.6 3.0 1.5 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF2085 PF09858.4 gi|147920977|ref|YP_685213.1| - 0.11 12.5 6.2 0.14 12.2 1.4 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2085) DUF3733 PF12534.3 gi|147920977|ref|YP_685213.1| - 0.19 11.0 0.7 0.4 10.0 0.5 1.5 1 0 0 1 1 1 0 Leucine-rich repeat containing protein 8 DUF3754 PF12576.3 gi|147920977|ref|YP_685213.1| - 7.9 6.1 7.4 20 4.7 5.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3754) RIC3 PF15361.1 gi|147920978|ref|YP_685212.1| - 0.12 12.5 0.5 3.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 Thg1C PF14413.1 gi|147920979|ref|YP_685211.1| - 1.9e-28 98.5 0.0 2.4e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 Thg1 C terminal domain Thg1 PF04446.7 gi|147920979|ref|YP_685211.1| - 1.1e-26 92.9 0.0 1.6e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Bac_DNA_binding PF00216.16 gi|147920979|ref|YP_685211.1| - 0.013 15.5 0.2 0.026 14.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial DNA-binding protein MFS_1 PF07690.11 gi|147920980|ref|YP_685210.1| - 1.9e-47 161.7 56.2 8.6e-29 100.3 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|147920980|ref|YP_685210.1| - 1.5e-07 29.9 27.2 1.8e-06 26.3 18.8 2.1 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.1 gi|147920980|ref|YP_685210.1| - 1.6e-05 23.5 39.7 1.6e-05 23.5 27.5 1.9 1 1 0 1 1 1 1 MFS/sugar transport protein Peptidase_M50 PF02163.17 gi|147920980|ref|YP_685210.1| - 0.00018 20.5 0.0 0.058 12.3 0.0 2.5 1 1 1 2 2 2 1 Peptidase family M50 MFS_1_like PF12832.2 gi|147920980|ref|YP_685210.1| - 0.00044 19.9 11.9 0.021 14.6 0.1 3.5 2 1 1 3 3 3 2 MFS_1 like family LacY_symp PF01306.14 gi|147920980|ref|YP_685210.1| - 0.0078 14.8 33.9 0.064 11.8 8.6 2.3 1 1 1 2 2 2 2 LacY proton/sugar symporter PRC PF05239.11 gi|147920981|ref|YP_685209.1| - 7.3e-11 41.7 0.3 9.9e-11 41.3 0.2 1.2 1 0 0 1 1 1 1 PRC-barrel domain HIN PF02760.10 gi|147920981|ref|YP_685209.1| - 0.11 11.8 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 HIN-200/IF120x domain CBS PF00571.23 gi|147920982|ref|YP_685208.1| - 1.5e-29 101.5 2.0 7.9e-17 60.7 0.7 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|147920982|ref|YP_685208.1| - 2.1e-14 52.9 16.8 1.6e-10 40.3 7.9 2.5 1 1 1 2 2 2 2 Peptidase family M50 TraB PF01963.12 gi|147920983|ref|YP_685207.1| - 1.8e-43 148.8 0.3 2.6e-43 148.3 0.2 1.2 1 0 0 1 1 1 1 TraB family Fe_dep_repr_C PF02742.10 gi|147920983|ref|YP_685207.1| - 0.35 10.5 2.1 1.8 8.3 0.1 2.6 3 0 0 3 3 3 0 Iron dependent repressor, metal binding and dimerisation domain HTH_3 PF01381.17 gi|147920984|ref|YP_685206.1| - 6e-09 35.6 0.0 1.4e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|147920984|ref|YP_685206.1| - 6.2e-06 26.3 0.0 1.8e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|147920984|ref|YP_685206.1| - 8.8e-06 25.6 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Herpes_US12 PF05363.7 gi|147920984|ref|YP_685206.1| - 0.074 13.5 0.4 0.13 12.7 0.3 1.4 1 0 0 1 1 1 0 Herpesvirus US12 family PrpR_N PF06506.6 gi|147920984|ref|YP_685206.1| - 0.091 12.1 5.2 0.066 12.6 1.2 2.4 3 1 0 3 3 3 0 Propionate catabolism activator NMT1_2 PF13379.1 gi|147920985|ref|YP_685205.1| - 3.3e-46 157.7 0.3 4.7e-46 157.2 0.2 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|147920985|ref|YP_685205.1| - 5e-28 98.1 0.1 6.5e-28 97.7 0.1 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|147920985|ref|YP_685205.1| - 4.9e-09 35.9 0.0 6.8e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Lipoprotein_9 PF03180.9 gi|147920985|ref|YP_685205.1| - 3.2e-08 32.7 0.0 5.8e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 NLPA lipoprotein OpuAC PF04069.7 gi|147920985|ref|YP_685205.1| - 2.3e-07 30.4 0.0 3.3e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_3 PF00497.15 gi|147920985|ref|YP_685205.1| - 1.7e-06 27.4 0.0 3.7e-06 26.3 0.0 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.4 gi|147920985|ref|YP_685205.1| - 0.0011 18.7 0.8 0.0034 17.2 0.6 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF3834 PF12916.2 gi|147920985|ref|YP_685205.1| - 0.013 14.5 0.0 0.05 12.6 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3834) Voltage_CLC PF00654.15 gi|147920985|ref|YP_685205.1| - 0.063 12.2 0.3 0.11 11.4 0.0 1.5 2 0 0 2 2 2 0 Voltage gated chloride channel BPD_transp_1 PF00528.17 gi|147920986|ref|YP_685204.1| - 9.4e-25 87.1 16.4 9.4e-25 87.1 11.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|147920987|ref|YP_685203.1| - 3.2e-32 111.6 0.0 5.4e-32 110.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147920987|ref|YP_685203.1| - 2.8e-10 40.6 0.0 0.0007 19.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|147920987|ref|YP_685203.1| - 3e-07 29.8 0.0 0.00025 20.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|147920987|ref|YP_685203.1| - 1.6e-05 24.2 0.0 0.06 12.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|147920987|ref|YP_685203.1| - 2.7e-05 24.4 0.2 0.12 12.5 0.1 2.4 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|147920987|ref|YP_685203.1| - 4e-05 22.8 0.0 9.8e-05 21.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|147920987|ref|YP_685203.1| - 0.00029 20.8 0.1 0.00057 19.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|147920987|ref|YP_685203.1| - 0.00047 20.2 0.2 0.0024 18.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|147920987|ref|YP_685203.1| - 0.0014 19.4 0.9 0.011 16.5 0.1 2.2 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|147920987|ref|YP_685203.1| - 0.0018 17.0 0.0 0.0025 16.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|147920987|ref|YP_685203.1| - 0.0033 16.9 0.0 0.0079 15.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|147920987|ref|YP_685203.1| - 0.0042 17.0 0.2 0.13 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|147920987|ref|YP_685203.1| - 0.0049 16.8 0.0 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase NACHT PF05729.7 gi|147920987|ref|YP_685203.1| - 0.0063 16.1 0.4 0.015 14.9 0.1 1.7 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.1 gi|147920987|ref|YP_685203.1| - 0.007 16.7 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|147920987|ref|YP_685203.1| - 0.0085 15.8 0.2 0.094 12.4 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|147920987|ref|YP_685203.1| - 0.0092 16.2 0.4 0.048 13.9 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|147920987|ref|YP_685203.1| - 0.01 15.5 0.3 0.031 13.9 0.0 1.9 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|147920987|ref|YP_685203.1| - 0.011 15.5 0.2 0.036 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|147920987|ref|YP_685203.1| - 0.012 15.1 0.1 0.077 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|147920987|ref|YP_685203.1| - 0.018 14.4 0.0 0.045 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|147920987|ref|YP_685203.1| - 0.02 13.5 0.1 0.87 8.0 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|147920987|ref|YP_685203.1| - 0.024 13.5 0.1 0.049 12.4 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain Mg_chelatase PF01078.16 gi|147920987|ref|YP_685203.1| - 0.038 13.1 0.0 0.11 11.6 0.0 1.8 2 1 1 3 3 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|147920987|ref|YP_685203.1| - 0.04 14.0 0.1 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_14 PF13173.1 gi|147920987|ref|YP_685203.1| - 0.051 13.4 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|147920987|ref|YP_685203.1| - 0.081 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin PduV-EutP PF10662.4 gi|147920987|ref|YP_685203.1| - 0.083 12.3 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Adeno_IVa2 PF02456.10 gi|147920987|ref|YP_685203.1| - 0.097 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_30 PF13604.1 gi|147920987|ref|YP_685203.1| - 0.12 11.9 0.0 0.5 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|147920987|ref|YP_685203.1| - 0.14 11.5 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|147920987|ref|YP_685203.1| - 0.14 12.0 0.1 0.36 10.7 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Response_reg PF00072.19 gi|147920988|ref|YP_685202.1| - 5.4e-29 100.4 0.7 6.1e-29 100.2 0.5 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Glyco_trans_4_2 PF13477.1 gi|147920988|ref|YP_685202.1| - 0.024 14.4 0.1 2.8 7.7 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like IF3_C PF00707.17 gi|147920988|ref|YP_685202.1| - 0.053 13.2 0.1 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 Translation initiation factor IF-3, C-terminal domain B12-binding PF02310.14 gi|147920988|ref|YP_685202.1| - 0.11 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain PPC PF04151.10 gi|147920989|ref|YP_685201.1| - 0.056 14.4 2.6 0.056 14.4 1.8 2.9 2 1 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain MMPL PF03176.10 gi|147920990|ref|YP_685200.1| - 2.7e-46 157.8 21.3 8.3e-26 90.4 5.8 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|147920990|ref|YP_685200.1| - 1.3e-06 27.9 7.8 1.3e-06 27.9 5.4 4.3 3 1 0 3 3 3 1 Sterol-sensing domain of SREBP cleavage-activation NPCBM_assoc PF10633.4 gi|147920991|ref|YP_685199.1| - 6.8e-13 48.4 0.1 3.8e-05 23.6 0.0 5.2 5 0 0 5 5 5 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|147920991|ref|YP_685199.1| - 3e-05 24.0 2.8 0.21 11.6 0.0 4.3 4 1 0 4 4 4 2 CARDB Lon_C PF05362.8 gi|147920992|ref|YP_685198.1| - 1.6e-31 109.1 3.4 3.1e-31 108.3 2.3 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|147920992|ref|YP_685198.1| - 3.9e-31 108.3 0.1 1.2e-21 76.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|147920992|ref|YP_685198.1| - 1.3e-17 63.6 0.1 6.1e-11 41.8 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|147920992|ref|YP_685198.1| - 7.5e-16 58.0 0.2 1.1e-08 34.7 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|147920992|ref|YP_685198.1| - 1.9e-10 40.0 0.6 0.0031 16.3 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|147920992|ref|YP_685198.1| - 3.2e-09 36.6 0.0 0.00023 20.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|147920992|ref|YP_685198.1| - 9.1e-09 34.8 1.5 1.3e-08 34.3 0.2 1.9 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|147920992|ref|YP_685198.1| - 4.7e-07 30.0 0.0 0.0058 16.8 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|147920992|ref|YP_685198.1| - 2.1e-06 27.9 0.0 0.0017 18.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|147920992|ref|YP_685198.1| - 1.3e-05 24.4 0.1 0.0066 15.5 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|147920992|ref|YP_685198.1| - 1.3e-05 25.4 0.0 3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|147920992|ref|YP_685198.1| - 1.3e-05 25.2 0.0 0.034 14.2 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_3 PF07726.6 gi|147920992|ref|YP_685198.1| - 0.0002 20.9 0.1 0.89 9.1 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|147920992|ref|YP_685198.1| - 0.00027 20.2 0.2 0.0014 17.9 0.0 2.2 2 1 0 2 2 2 1 PhoH-like protein AAA_19 PF13245.1 gi|147920992|ref|YP_685198.1| - 0.00031 20.4 0.0 0.00079 19.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|147920992|ref|YP_685198.1| - 0.0007 19.2 0.0 0.0025 17.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|147920992|ref|YP_685198.1| - 0.0008 18.2 0.4 0.3 9.7 0.0 2.5 3 0 0 3 3 3 1 TIP49 C-terminus NACHT PF05729.7 gi|147920992|ref|YP_685198.1| - 0.003 17.2 0.0 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_2 PF07724.9 gi|147920992|ref|YP_685198.1| - 0.0031 17.4 0.1 1.6 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|147920992|ref|YP_685198.1| - 0.0031 16.4 0.0 0.0083 15.0 0.0 1.7 2 0 0 2 2 1 1 Type II/IV secretion system protein Parvo_NS1 PF01057.12 gi|147920992|ref|YP_685198.1| - 0.0039 16.1 0.0 0.0066 15.3 0.0 1.2 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 AAA_33 PF13671.1 gi|147920992|ref|YP_685198.1| - 0.0058 16.5 0.0 0.019 14.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|147920992|ref|YP_685198.1| - 0.0087 16.0 0.0 0.1 12.5 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain KTI12 PF08433.5 gi|147920992|ref|YP_685198.1| - 0.0088 15.2 0.0 0.047 12.9 0.0 2.1 2 0 0 2 2 2 1 Chromatin associated protein KTI12 ABC_tran PF00005.22 gi|147920992|ref|YP_685198.1| - 0.011 16.0 0.0 0.053 13.8 0.0 2.1 2 0 0 2 2 2 0 ABC transporter TrwB_AAD_bind PF10412.4 gi|147920992|ref|YP_685198.1| - 0.013 14.1 0.0 0.023 13.3 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|147920992|ref|YP_685198.1| - 0.014 14.3 0.0 0.054 12.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|147920992|ref|YP_685198.1| - 0.014 14.7 0.0 0.062 12.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|147920992|ref|YP_685198.1| - 0.025 14.5 0.0 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|147920992|ref|YP_685198.1| - 0.026 13.1 0.0 1.4 7.5 0.0 2.4 2 0 0 2 2 2 0 PrkA AAA domain DUF4191 PF13829.1 gi|147920992|ref|YP_685198.1| - 0.028 13.5 1.3 0.052 12.6 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) FtsK_SpoIIIE PF01580.13 gi|147920992|ref|YP_685198.1| - 0.031 13.7 0.3 0.085 12.3 0.0 1.9 2 0 0 2 2 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|147920992|ref|YP_685198.1| - 0.042 14.6 0.0 0.11 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|147920992|ref|YP_685198.1| - 0.052 12.6 0.0 0.11 11.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|147920992|ref|YP_685198.1| - 0.065 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain FA_desaturase PF00487.19 gi|147920992|ref|YP_685198.1| - 0.084 12.2 0.6 0.14 11.6 0.4 1.2 1 0 0 1 1 1 0 Fatty acid desaturase RNA_helicase PF00910.17 gi|147920992|ref|YP_685198.1| - 0.12 12.5 0.0 0.34 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase PmbA_TldD PF01523.11 gi|147920994|ref|YP_685196.1| - 1.3e-71 241.3 0.1 1.6e-71 241.0 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|147920995|ref|YP_685195.1| - 1.5e-62 211.5 2.9 1.9e-62 211.2 2.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Pyridox_ox_2 PF12900.2 gi|147920999|ref|YP_685191.1| - 2.5e-32 111.6 0.0 2.8e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|147920999|ref|YP_685191.1| - 2.7e-16 59.3 0.0 4.7e-16 58.5 0.0 1.4 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.7 gi|147920999|ref|YP_685191.1| - 0.0027 17.2 0.0 0.02 14.3 0.0 1.9 1 1 0 1 1 1 1 Putative FMN-binding domain Asp-Al_Ex PF06826.7 gi|147921000|ref|YP_685190.1| - 0.071 12.5 0.6 0.099 12.1 0.4 1.2 1 0 0 1 1 1 0 Predicted Permease Membrane Region DUF711 PF05167.7 gi|147921001|ref|YP_685189.1| - 2.9e-169 563.0 6.9 3.6e-169 562.7 4.8 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) ACT_6 PF13740.1 gi|147921002|ref|YP_685188.1| - 1.7e-16 59.6 1.3 1.9e-16 59.5 0.9 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|147921002|ref|YP_685188.1| - 5.9e-13 48.0 0.5 7.5e-13 47.6 0.3 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|147921002|ref|YP_685188.1| - 2.7e-08 34.0 1.1 3.4e-08 33.7 0.8 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|147921002|ref|YP_685188.1| - 9.5e-05 21.8 0.1 0.00016 21.1 0.1 1.4 1 0 0 1 1 1 1 ACT domain DUF4277 PF14104.1 gi|147921002|ref|YP_685188.1| - 0.057 13.6 0.6 1.6 8.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4277) UPF0020 PF01170.13 gi|147921003|ref|YP_685187.1| - 9.8e-31 106.7 0.0 1.4e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|147921003|ref|YP_685187.1| - 2.2e-13 50.2 0.0 3.9e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.12 gi|147921003|ref|YP_685187.1| - 7.1e-11 42.1 0.0 1.1e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.1 gi|147921003|ref|YP_685187.1| - 2.3e-09 37.0 0.0 3.9e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147921003|ref|YP_685187.1| - 3.5e-06 26.3 0.0 6.5e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|147921003|ref|YP_685187.1| - 6e-06 26.6 0.0 2.1e-05 24.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147921003|ref|YP_685187.1| - 3.5e-05 23.2 0.0 5.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|147921003|ref|YP_685187.1| - 8.9e-05 22.0 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|147921003|ref|YP_685187.1| - 0.00013 21.5 0.0 0.0044 16.5 0.0 2.3 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.1 gi|147921003|ref|YP_685187.1| - 0.007 16.7 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|147921003|ref|YP_685187.1| - 0.012 15.0 0.0 0.046 13.1 0.0 1.8 1 1 0 2 2 2 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|147921003|ref|YP_685187.1| - 0.012 16.1 0.0 0.026 15.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain N6_Mtase PF02384.11 gi|147921003|ref|YP_685187.1| - 0.052 12.6 0.0 0.076 12.0 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_12 PF08242.7 gi|147921003|ref|YP_685187.1| - 0.075 13.5 0.0 0.4 11.1 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain HisKA_2 PF07568.7 gi|147921004|ref|YP_685186.1| - 3.6e-31 106.8 4.3 7.8e-31 105.7 0.8 2.6 2 0 0 2 2 2 1 Histidine kinase PAS_3 PF08447.6 gi|147921004|ref|YP_685186.1| - 8.8e-17 60.9 0.0 3e-16 59.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|147921004|ref|YP_685186.1| - 2.2e-15 56.8 0.0 1.1e-14 54.6 0.0 2.2 3 0 0 3 3 2 1 PAS domain PAS PF00989.19 gi|147921004|ref|YP_685186.1| - 1.6e-11 43.9 0.0 5.9e-11 42.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|147921004|ref|YP_685186.1| - 1.9e-10 40.7 0.0 3.4e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|147921004|ref|YP_685186.1| - 5e-08 32.6 0.8 8.8e-08 31.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HWE_HK PF07536.9 gi|147921004|ref|YP_685186.1| - 3.7e-06 27.2 0.1 7.8e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|147921004|ref|YP_685186.1| - 2e-05 24.3 0.0 4.7e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|147921004|ref|YP_685186.1| - 0.00092 19.1 0.0 0.0034 17.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.1 gi|147921004|ref|YP_685186.1| - 0.0016 18.2 0.0 0.0042 16.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain Kinesin-related PF06548.6 gi|147921004|ref|YP_685186.1| - 0.02 13.4 0.2 0.029 12.9 0.1 1.2 1 0 0 1 1 1 0 Kinesin-related DUF1449 PF07290.6 gi|147921004|ref|YP_685186.1| - 0.071 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) CCDC155 PF14662.1 gi|147921005|ref|YP_685185.1| - 0.0041 16.7 0.7 0.0062 16.1 0.5 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 Kinesin-related PF06548.6 gi|147921005|ref|YP_685185.1| - 0.027 13.0 0.1 0.034 12.7 0.0 1.1 1 0 0 1 1 1 0 Kinesin-related DivIC PF04977.10 gi|147921005|ref|YP_685185.1| - 0.032 13.7 1.6 0.077 12.4 0.4 2.0 2 0 0 2 2 2 0 Septum formation initiator Seryl_tRNA_N PF02403.17 gi|147921005|ref|YP_685185.1| - 0.035 14.1 1.2 0.043 13.8 0.3 1.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HALZ PF02183.13 gi|147921005|ref|YP_685185.1| - 0.064 12.9 1.4 0.099 12.3 1.0 1.3 1 0 0 1 1 1 0 Homeobox associated leucine zipper Fzo_mitofusin PF04799.8 gi|147921005|ref|YP_685185.1| - 0.11 11.8 0.0 0.39 10.0 0.0 1.7 2 0 0 2 2 2 0 fzo-like conserved region DUF4363 PF14276.1 gi|147921005|ref|YP_685185.1| - 0.13 12.0 0.9 0.17 11.5 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) TGT_C2 PF14810.1 gi|147921008|ref|YP_685182.1| - 4.4e-31 106.5 0.1 7.8e-31 105.7 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|147921008|ref|YP_685182.1| - 3.1e-16 58.8 0.1 7.3e-16 57.6 0.0 1.6 2 0 0 2 2 2 1 PUA domain HTH_24 PF13412.1 gi|147921009|ref|YP_685181.1| - 4.3e-15 54.8 0.0 1.2e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ_2 PF13360.1 gi|147921009|ref|YP_685181.1| - 1.5e-12 47.5 1.2 0.00043 19.8 0.0 4.2 2 2 1 3 3 3 3 PQQ-like domain HTH_5 PF01022.15 gi|147921009|ref|YP_685181.1| - 1.6e-09 37.2 0.0 7.1e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|147921009|ref|YP_685181.1| - 2.2e-08 33.7 0.0 1.6e-06 27.7 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|147921009|ref|YP_685181.1| - 1.5e-07 30.9 0.0 1.4e-05 24.7 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|147921009|ref|YP_685181.1| - 1.9e-06 27.7 0.0 0.0031 17.5 0.0 2.8 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|147921009|ref|YP_685181.1| - 2e-06 27.4 0.0 0.0081 15.9 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|147921009|ref|YP_685181.1| - 0.00018 21.1 0.0 0.0052 16.4 0.0 2.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PQQ PF01011.16 gi|147921009|ref|YP_685181.1| - 0.00056 19.3 8.1 0.048 13.2 0.0 4.3 5 0 0 5 5 4 2 PQQ enzyme repeat GerE PF00196.14 gi|147921009|ref|YP_685181.1| - 0.00071 18.8 0.0 0.016 14.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family PQQ_3 PF13570.1 gi|147921009|ref|YP_685181.1| - 0.001 19.2 11.4 0.006 16.8 0.1 6.1 6 2 1 7 7 5 1 PQQ-like domain Sigma70_r4 PF04545.11 gi|147921009|ref|YP_685181.1| - 0.0014 17.8 0.0 0.33 10.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|147921009|ref|YP_685181.1| - 0.0015 18.0 0.0 0.0059 16.1 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|147921009|ref|YP_685181.1| - 0.0036 17.6 0.0 0.015 15.6 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|147921009|ref|YP_685181.1| - 0.011 15.1 0.0 2.6 7.5 0.1 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|147921009|ref|YP_685181.1| - 0.015 14.8 0.0 0.037 13.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CHASE4 PF05228.8 gi|147921009|ref|YP_685181.1| - 0.029 13.9 0.0 1 8.9 0.0 2.7 2 0 0 2 2 2 0 CHASE4 domain HTH_23 PF13384.1 gi|147921009|ref|YP_685181.1| - 0.034 13.8 0.0 0.71 9.6 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain FaeA PF04703.7 gi|147921009|ref|YP_685181.1| - 0.036 14.2 0.2 0.26 11.4 0.0 2.4 3 0 0 3 3 3 0 FaeA-like protein HTH_24 PF13412.1 gi|147921010|ref|YP_685180.1| - 2.2e-08 33.3 0.0 4e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147921010|ref|YP_685180.1| - 1.9e-06 27.4 0.1 5.2e-06 26.0 0.0 1.9 1 1 1 2 2 2 1 MarR family HTH_5 PF01022.15 gi|147921010|ref|YP_685180.1| - 2.7e-06 26.9 0.0 8.2e-06 25.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|147921010|ref|YP_685180.1| - 4.9e-06 26.7 0.0 7.6e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|147921010|ref|YP_685180.1| - 1e-05 25.0 0.0 2.7e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|147921010|ref|YP_685180.1| - 3.1e-05 23.4 0.0 0.0067 15.9 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|147921010|ref|YP_685180.1| - 5.4e-05 22.7 0.0 0.00074 19.0 0.0 2.4 3 0 0 3 3 3 1 Homeodomain-like domain TrmB PF01978.14 gi|147921010|ref|YP_685180.1| - 9.1e-05 22.0 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|147921010|ref|YP_685180.1| - 0.00032 20.3 0.0 0.00085 18.9 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|147921010|ref|YP_685180.1| - 0.00034 20.3 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|147921010|ref|YP_685180.1| - 0.00066 19.7 0.0 0.00096 19.2 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|147921010|ref|YP_685180.1| - 0.00099 18.8 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix MotA_activ PF09114.5 gi|147921010|ref|YP_685180.1| - 0.0033 17.1 0.0 0.0041 16.8 0.0 1.1 1 0 0 1 1 1 1 Transcription factor MotA, activation domain RNA_pol_Rpc34 PF05158.7 gi|147921010|ref|YP_685180.1| - 0.005 16.0 0.0 0.0066 15.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpc34 subunit HTH_Crp_2 PF13545.1 gi|147921010|ref|YP_685180.1| - 0.012 15.4 0.0 0.038 13.7 0.0 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|147921010|ref|YP_685180.1| - 0.015 15.0 0.0 0.024 14.3 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|147921010|ref|YP_685180.1| - 0.017 14.7 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Tnp_1 PF01527.15 gi|147921010|ref|YP_685180.1| - 0.026 14.4 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Transposase HTH_28 PF13518.1 gi|147921010|ref|YP_685180.1| - 0.045 13.7 0.0 0.098 12.6 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147921010|ref|YP_685180.1| - 0.074 12.5 0.0 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 DUF742 PF05331.6 gi|147921010|ref|YP_685180.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF742) HTH_3 PF01381.17 gi|147921010|ref|YP_685180.1| - 0.13 12.1 0.0 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix RPA_C PF08784.6 gi|147921010|ref|YP_685180.1| - 0.14 12.6 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal PQQ_2 PF13360.1 gi|147921011|ref|YP_685179.1| - 2.7e-15 56.4 0.4 1.5e-05 24.5 0.0 4.4 2 2 0 3 3 3 3 PQQ-like domain HTH_24 PF13412.1 gi|147921011|ref|YP_685179.1| - 1.7e-13 49.7 0.2 6.7e-08 31.7 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|147921011|ref|YP_685179.1| - 3.4e-09 36.2 0.0 5e-08 32.4 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|147921011|ref|YP_685179.1| - 4.9e-09 35.7 0.0 0.0026 17.3 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|147921011|ref|YP_685179.1| - 2.9e-08 33.2 0.1 0.0002 20.9 0.1 2.6 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|147921011|ref|YP_685179.1| - 7.9e-08 31.9 0.1 0.0025 17.5 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain PQQ PF01011.16 gi|147921011|ref|YP_685179.1| - 3.4e-07 29.4 4.9 0.11 12.0 0.1 6.1 6 0 0 6 6 5 2 PQQ enzyme repeat PQQ_3 PF13570.1 gi|147921011|ref|YP_685179.1| - 1.9e-06 27.9 16.4 0.011 15.9 0.1 6.7 8 0 0 8 8 7 2 PQQ-like domain HTH_IclR PF09339.5 gi|147921011|ref|YP_685179.1| - 4.4e-06 26.1 0.0 0.0038 16.7 0.0 2.4 2 0 0 2 2 2 2 IclR helix-turn-helix domain TrmB PF01978.14 gi|147921011|ref|YP_685179.1| - 9e-05 22.1 0.1 0.00048 19.7 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|147921011|ref|YP_685179.1| - 0.004 16.8 0.0 0.011 15.4 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|147921011|ref|YP_685179.1| - 0.016 15.4 0.0 9.1 6.6 0.0 2.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|147921011|ref|YP_685179.1| - 0.017 14.7 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain EAP30 PF04157.11 gi|147921011|ref|YP_685179.1| - 0.047 12.8 0.0 7.4 5.6 0.0 2.1 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_AsnC-type PF13404.1 gi|147921011|ref|YP_685179.1| - 0.048 13.1 0.1 0.088 12.3 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain SGL PF08450.7 gi|147921011|ref|YP_685179.1| - 0.053 12.8 0.1 2.7 7.3 0.0 3.2 3 0 0 3 3 3 0 SMP-30/Gluconolaconase/LRE-like region Sigma70_r4_2 PF08281.7 gi|147921011|ref|YP_685179.1| - 0.099 12.1 0.0 8.5 5.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 RNB PF00773.14 gi|147921012|ref|YP_685178.1| - 1.3e-12 47.6 0.0 1.7e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 RNB domain S1 PF00575.18 gi|147921012|ref|YP_685178.1| - 4.5e-05 23.4 0.0 0.002 18.2 0.0 2.2 1 1 0 1 1 1 1 S1 RNA binding domain NHL PF01436.16 gi|147921014|ref|YP_685176.1| - 6.2e-21 73.2 1.9 2.5e-06 27.1 0.0 4.8 4 0 0 4 4 4 4 NHL repeat SGL PF08450.7 gi|147921014|ref|YP_685176.1| - 5.9e-07 29.1 0.3 1.3 8.3 0.0 4.2 2 2 2 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|147921014|ref|YP_685176.1| - 2e-06 27.4 0.7 0.0039 16.9 0.4 4.2 5 0 0 5 5 5 2 Beta-propeller repeat PQQ_3 PF13570.1 gi|147921014|ref|YP_685176.1| - 0.0083 16.3 5.8 20 5.6 0.1 5.2 5 0 0 5 5 5 1 PQQ-like domain CPSF_A PF03178.10 gi|147921014|ref|YP_685176.1| - 0.018 14.1 0.0 0.042 12.9 0.0 1.5 2 0 0 2 2 2 0 CPSF A subunit region PQQ_2 PF13360.1 gi|147921015|ref|YP_685175.1| - 2.2e-15 56.7 0.1 1.8e-08 34.1 0.0 3.9 2 1 0 3 3 3 2 PQQ-like domain HTH_24 PF13412.1 gi|147921015|ref|YP_685175.1| - 5.5e-12 44.8 0.1 5.2e-09 35.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|147921015|ref|YP_685175.1| - 1.6e-09 37.2 0.0 4.1e-09 35.9 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|147921015|ref|YP_685175.1| - 2.5e-08 33.4 0.0 1.7e-05 24.4 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147921015|ref|YP_685175.1| - 4e-08 32.9 0.5 0.00014 21.5 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain PQQ PF01011.16 gi|147921015|ref|YP_685175.1| - 5.3e-07 28.8 8.7 0.045 13.3 0.5 6.0 5 1 1 6 6 6 2 PQQ enzyme repeat TrmB PF01978.14 gi|147921015|ref|YP_685175.1| - 1.7e-05 24.4 0.1 6e-05 22.6 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|147921015|ref|YP_685175.1| - 4e-05 23.0 0.0 7.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|147921015|ref|YP_685175.1| - 0.00015 21.7 0.0 0.42 10.6 0.0 2.7 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|147921015|ref|YP_685175.1| - 0.0002 20.8 0.3 0.00072 19.0 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|147921015|ref|YP_685175.1| - 0.00038 20.0 0.0 0.0034 17.0 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.7 gi|147921015|ref|YP_685175.1| - 0.0017 17.9 0.2 0.4 10.2 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR PF01047.17 gi|147921015|ref|YP_685175.1| - 0.0027 17.3 0.0 0.006 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Tnp_IS630 PF01710.11 gi|147921015|ref|YP_685175.1| - 0.022 14.4 0.0 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 Transposase Sulfolobus_pRN PF05584.6 gi|147921015|ref|YP_685175.1| - 0.03 14.2 0.1 0.056 13.4 0.1 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|147921015|ref|YP_685175.1| - 0.04 13.5 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain PQQ_3 PF13570.1 gi|147921015|ref|YP_685175.1| - 0.077 13.2 24.7 0.31 11.3 0.0 8.0 8 3 1 9 9 8 0 PQQ-like domain HTH_DeoR PF08220.7 gi|147921015|ref|YP_685175.1| - 0.15 11.5 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_26 PF13443.1 gi|147921015|ref|YP_685175.1| - 0.19 11.9 0.0 0.42 10.8 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain tRNA_anti-codon PF01336.20 gi|147921017|ref|YP_685173.1| - 0.044 13.6 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|147921018|ref|YP_685172.1| - 0.00021 21.1 0.2 0.0038 17.0 0.0 2.7 2 1 0 2 2 2 1 OB-fold nucleic acid binding domain DUF91 PF01939.11 gi|147921020|ref|YP_685170.1| - 0.055 12.6 0.0 0.089 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF91 DUF2874 PF11396.3 gi|147921020|ref|YP_685170.1| - 0.13 12.1 0.1 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2874) GATase PF00117.23 gi|147921021|ref|YP_685169.1| - 4.4e-37 127.3 0.0 5e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|147921021|ref|YP_685169.1| - 9.3e-15 54.6 0.1 1.9e-13 50.3 0.0 2.3 1 1 1 2 2 2 1 Peptidase C26 CxxCxxCC PF03692.10 gi|147921022|ref|YP_685168.1| - 3.2e-12 46.7 0.1 8.9e-12 45.3 0.0 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Fer4_15 PF13459.1 gi|147921022|ref|YP_685168.1| - 0.017 15.6 1.3 1.9 9.1 0.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain LURAP PF14854.1 gi|147921022|ref|YP_685168.1| - 0.079 12.6 0.1 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Leucine rich adaptor protein AhpC-TSA PF00578.16 gi|147921023|ref|YP_685167.1| - 4.1e-23 81.4 0.0 4.8e-23 81.1 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|147921023|ref|YP_685167.1| - 3.3e-10 39.6 0.0 4.1e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|147921023|ref|YP_685167.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like CxxCxxCC PF03692.10 gi|147921024|ref|YP_685166.1| - 1.1e-09 38.5 2.5 1.9e-08 34.6 1.7 2.2 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Exc PF07825.6 gi|147921024|ref|YP_685166.1| - 0.11 12.2 0.8 0.51 10.1 0.5 2.2 1 1 0 1 1 1 0 Excisionase-like protein Cupredoxin_1 PF13473.1 gi|147921025|ref|YP_685165.1| - 4.7e-06 26.4 0.0 5.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Cupredoxin-like domain Aa_trans PF01490.13 gi|147921026|ref|YP_685164.1| - 0.01 14.3 4.5 0.011 14.2 3.1 1.0 1 0 0 1 1 1 0 Transmembrane amino acid transporter protein DUF4199 PF13858.1 gi|147921026|ref|YP_685164.1| - 0.033 14.1 4.3 0.035 14.0 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Ferric_reduct PF01794.14 gi|147921026|ref|YP_685164.1| - 0.084 12.9 6.0 0.13 12.3 4.2 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Herpes_LMP1 PF05297.6 gi|147921026|ref|YP_685164.1| - 1.6 7.6 3.9 1.7 7.5 2.7 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Cupredoxin_1 PF13473.1 gi|147921027|ref|YP_685163.1| - 4.4e-11 42.5 0.0 6e-11 42.1 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.15 gi|147921027|ref|YP_685163.1| - 2e-09 37.5 1.3 1.6e-07 31.4 0.9 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PT PF04886.7 gi|147921027|ref|YP_685163.1| - 1.2e-05 24.4 25.8 2.2e-05 23.6 17.9 1.4 1 0 0 1 1 1 1 PT repeat DUF4402 PF14352.1 gi|147921027|ref|YP_685163.1| - 0.14 12.6 2.3 0.2 12.1 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4402) DUF1180 PF06679.7 gi|147921027|ref|YP_685163.1| - 0.17 11.7 8.2 0.23 11.3 5.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) DUF4106 PF13388.1 gi|147921027|ref|YP_685163.1| - 0.81 8.5 5.3 1 8.2 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) Copper-bind PF00127.15 gi|147921028|ref|YP_685162.1| - 5.3e-17 61.8 0.7 6.4e-17 61.6 0.5 1.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|147921028|ref|YP_685162.1| - 1.5e-16 60.1 0.0 1.9e-16 59.7 0.0 1.0 1 0 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.15 gi|147921028|ref|YP_685162.1| - 0.00019 21.1 0.1 0.00028 20.5 0.1 1.3 1 0 0 1 1 1 1 PKD domain DUF2946 PF11162.3 gi|147921028|ref|YP_685162.1| - 0.035 14.3 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) Glyco_transf_10 PF00852.14 gi|147921028|ref|YP_685162.1| - 0.041 12.4 0.0 0.045 12.3 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase family 10 (fucosyltransferase) SEF14_adhesin PF06443.6 gi|147921028|ref|YP_685162.1| - 0.044 13.4 0.4 0.058 13.0 0.3 1.1 1 0 0 1 1 1 0 SEF14-like adhesin DUF3761 PF12587.3 gi|147921028|ref|YP_685162.1| - 0.59 10.2 3.4 25 5.0 2.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3761) PBP1_TM PF14812.1 gi|147921028|ref|YP_685162.1| - 3.8 7.8 9.2 0.29 11.4 1.3 2.0 2 0 0 2 2 2 0 Transmembrane domain of transglycosylase PBP1 at N-terminal Radical_SAM PF04055.16 gi|147921029|ref|YP_685161.1| - 4.1e-16 59.5 0.0 1.2e-15 58.1 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.2 gi|147921029|ref|YP_685161.1| - 0.0046 16.8 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HEAT_EZ PF13513.1 gi|147921030|ref|YP_685160.1| - 0.097 13.1 0.0 0.39 11.2 0.0 2.0 1 1 0 1 1 1 0 HEAT-like repeat YbjM PF11045.3 gi|147921030|ref|YP_685160.1| - 0.45 10.2 8.4 0.89 9.3 5.8 1.5 1 1 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae DDE_Tnp_1 PF01609.16 gi|147921031|ref|YP_686766.1| - 1.9e-16 60.2 0.0 3.2e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147921031|ref|YP_686766.1| - 2e-10 40.4 0.0 4e-10 39.4 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147921031|ref|YP_686766.1| - 3.6e-06 26.8 0.0 6.9e-06 25.8 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_assoc PF13808.1 gi|147921031|ref|YP_686766.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.8 1 0 0 1 1 1 0 DDE_Tnp_1-associated zf-ribbon_3 PF13248.1 gi|147921032|ref|YP_685158.1| - 6e-07 28.4 2.9 1.2e-06 27.5 2.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147921032|ref|YP_685158.1| - 9.2e-07 28.1 4.1 2.4e-06 26.8 2.8 1.7 1 0 0 1 1 1 1 zinc-ribbon domain HEAT_2 PF13646.1 gi|147921032|ref|YP_685158.1| - 3.8e-05 23.8 0.1 0.00012 22.2 0.0 1.8 2 0 0 2 2 2 1 HEAT repeats DZR PF12773.2 gi|147921032|ref|YP_685158.1| - 0.00028 20.6 1.7 0.00056 19.6 1.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF1772 PF08592.6 gi|147921032|ref|YP_685158.1| - 0.023 14.4 0.9 0.073 12.7 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) Prok-RING_1 PF14446.1 gi|147921032|ref|YP_685158.1| - 0.027 14.1 0.7 0.049 13.3 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 AMOP PF03782.12 gi|147921033|ref|YP_685157.1| - 0.028 14.4 0.1 0.038 13.9 0.1 1.2 1 0 0 1 1 1 0 AMOP domain DUF4352 PF11611.3 gi|147921034|ref|YP_685156.1| - 8.9e-05 22.6 0.1 0.00026 21.1 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) Mucin PF01456.12 gi|147921034|ref|YP_685156.1| - 0.048 13.4 6.5 0.069 12.9 4.5 1.2 1 0 0 1 1 1 0 Mucin-like glycoprotein Permease PF02405.11 gi|147921034|ref|YP_685156.1| - 0.099 12.1 0.1 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Permease Cut8_N PF14482.1 gi|147921034|ref|YP_685156.1| - 2 8.4 5.0 3.9 7.5 3.5 1.4 1 0 0 1 1 1 0 Cut8 proteasome-binding domain DDE_Tnp_ISL3 PF01610.12 gi|147921035|ref|YP_684985.1| - 6.6e-73 245.3 2.9 8.6e-73 244.9 2.0 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|147921035|ref|YP_684985.1| - 3.9e-12 45.1 0.0 7.4e-12 44.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.1 gi|147921035|ref|YP_684985.1| - 1.1e-05 25.4 7.2 2.8e-05 24.0 5.0 1.8 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 GIIM PF08388.6 gi|147921035|ref|YP_684985.1| - 0.074 12.8 1.9 0.13 12.0 0.2 2.2 2 0 0 2 2 2 0 Group II intron, maturase-specific domain DUF4352 PF11611.3 gi|147921036|ref|YP_685154.1| - 7.4e-05 22.8 2.1 0.00011 22.3 1.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) DUF2634 PF10934.3 gi|147921036|ref|YP_685154.1| - 0.055 13.2 0.1 0.094 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) ODV-E18 PF10717.4 gi|147921036|ref|YP_685154.1| - 0.075 12.4 2.2 0.077 12.4 0.5 1.8 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 DUF4013 PF13197.1 gi|147921037|ref|YP_685153.1| - 0.021 14.1 16.6 0.033 13.5 11.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4013) Dispanin PF04505.7 gi|147921037|ref|YP_685153.1| - 0.25 10.9 7.7 3.8 7.1 0.3 2.6 2 0 0 2 2 2 0 Interferon-induced transmembrane protein DUF373 PF04123.8 gi|147921038|ref|YP_685152.1| - 0.46 9.4 6.5 0.74 8.7 4.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) BRI3BP PF14965.1 gi|147921039|ref|YP_685151.1| - 3.4 7.0 8.9 0.18 11.1 1.3 2.1 1 1 1 2 2 2 0 Negative regulator of p53/TP53 MAF_flag10 PF01973.13 gi|147921040|ref|YP_685150.1| - 7.5e-36 123.1 0.0 9.8e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|147921040|ref|YP_685150.1| - 0.0024 17.4 0.2 0.013 15.0 0.1 2.0 1 1 1 2 2 2 1 Thiamin pyrophosphokinase, catalytic domain tRNA-synt_1 PF00133.17 gi|147921041|ref|YP_685149.1| - 2.3e-193 643.5 1.3 1.6e-112 376.5 0.0 2.4 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|147921041|ref|YP_685149.1| - 5e-33 114.0 1.4 2.4e-32 111.8 0.5 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|147921041|ref|YP_685149.1| - 1.8e-25 89.4 0.3 3.5e-10 39.1 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|147921041|ref|YP_685149.1| - 4.8e-05 22.6 0.0 0.00051 19.2 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|147921041|ref|YP_685149.1| - 0.00015 20.5 0.0 0.00084 18.1 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) P68HR PF08061.6 gi|147921042|ref|YP_685148.1| - 0.084 12.6 1.0 0.19 11.4 0.7 1.6 1 0 0 1 1 1 0 P68HR (NUC004) repeat HTH_42 PF06224.7 gi|147921043|ref|YP_685147.1| - 2.8e-50 171.5 0.7 3.2e-50 171.3 0.5 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HMG-CoA_red PF00368.13 gi|147921044|ref|YP_685146.1| - 1.9e-92 309.7 6.1 2.5e-92 309.4 4.2 1.1 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF2897 PF11446.3 gi|147921047|ref|YP_685143.1| - 2.1 8.2 4.6 3.9 7.3 3.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2897) VWA_2 PF13519.1 gi|147921050|ref|YP_685140.1| - 1.7e-25 90.1 1.6 3.4e-22 79.3 0.3 2.6 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA PF00092.23 gi|147921050|ref|YP_685140.1| - 2.2e-22 79.6 2.9 2.1e-21 76.4 0.5 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain Big_1 PF02369.11 gi|147921050|ref|YP_685140.1| - 1.6e-20 72.8 27.3 7.6e-08 32.1 0.9 6.8 6 0 0 6 6 6 5 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|147921050|ref|YP_685140.1| - 1.5e-11 44.1 26.4 0.00044 20.2 1.3 7.2 7 0 0 7 7 7 4 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|147921050|ref|YP_685140.1| - 6.3e-09 36.1 9.4 0.13 12.2 0.0 6.4 6 1 0 7 7 7 3 Domain of unknown function (DUF4198) VWA_3 PF13768.1 gi|147921050|ref|YP_685140.1| - 5.4e-07 29.4 0.1 1.7e-06 27.8 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|147921050|ref|YP_685140.1| - 0.00048 19.3 0.0 0.33 10.0 0.0 2.2 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein Big_3_4 PF13754.1 gi|147921050|ref|YP_685140.1| - 0.0049 17.1 0.6 0.0049 17.1 0.4 7.9 7 1 0 8 8 8 2 Bacterial Ig-like domain (group 3) vWA-TerF-like PF10138.4 gi|147921050|ref|YP_685140.1| - 0.019 14.7 0.6 0.58 9.9 0.0 2.4 2 0 0 2 2 2 0 vWA found in TerF C terminus CAMSAP_CKK PF08683.6 gi|147921050|ref|YP_685140.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated DUF1743 PF08489.6 gi|147921051|ref|YP_685139.1| - 1.8e-11 43.8 0.2 4.4e-10 39.3 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1743) PTA_PTB PF01515.14 gi|147921052|ref|YP_685138.1| - 2.5e-06 26.7 0.0 1.6e-05 24.1 0.0 2.3 1 1 0 1 1 1 1 Phosphate acetyl/butaryl transferase Methyltrans_Mon PF14314.1 gi|147921052|ref|YP_685138.1| - 0.15 9.9 0.0 0.19 9.5 0.0 1.1 1 0 0 1 1 1 0 Virus-capping methyltransferase DUF362 PF04015.7 gi|147921053|ref|YP_685137.1| - 6.4e-23 81.3 0.0 1.5e-22 80.0 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Fer4 PF00037.22 gi|147921053|ref|YP_685137.1| - 2.7e-07 29.9 15.0 0.00064 19.2 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147921053|ref|YP_685137.1| - 8.1e-07 28.6 19.1 5.4e-05 22.8 1.0 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147921053|ref|YP_685137.1| - 1.5e-06 28.3 11.7 1.5e-06 28.3 8.1 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147921053|ref|YP_685137.1| - 3.1e-05 24.2 13.6 3.1e-05 24.2 9.4 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147921053|ref|YP_685137.1| - 5.5e-05 22.8 24.6 0.00032 20.4 9.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147921053|ref|YP_685137.1| - 8.7e-05 22.3 8.1 8.7e-05 22.3 5.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147921053|ref|YP_685137.1| - 9.3e-05 22.4 16.2 0.012 15.8 2.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147921053|ref|YP_685137.1| - 0.00033 21.0 12.9 0.028 14.8 1.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921053|ref|YP_685137.1| - 0.00083 19.1 17.7 0.016 15.1 0.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147921053|ref|YP_685137.1| - 0.0019 18.1 17.8 0.0032 17.4 10.4 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921053|ref|YP_685137.1| - 0.0025 18.5 0.9 0.0025 18.5 0.6 2.6 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain DUF2088 PF09861.4 gi|147921053|ref|YP_685137.1| - 0.0067 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) Fer4_3 PF12798.2 gi|147921053|ref|YP_685137.1| - 0.024 15.1 7.4 0.024 15.1 5.1 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|147921053|ref|YP_685137.1| - 0.17 11.7 5.6 0.37 10.6 3.9 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147921053|ref|YP_685137.1| - 0.18 12.1 15.6 0.94 9.8 1.5 2.7 1 1 3 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|147921053|ref|YP_685137.1| - 1.7 9.0 13.6 3 8.3 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transferase PF00483.18 gi|147921054|ref|YP_685136.1| - 5.6e-27 94.6 0.0 1.1e-26 93.6 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase MannoseP_isomer PF01050.13 gi|147921054|ref|YP_685136.1| - 3.4e-08 33.2 0.1 8.7e-08 31.9 0.1 1.7 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Cupin_2 PF07883.6 gi|147921054|ref|YP_685136.1| - 1.3e-07 30.9 0.5 3.3e-07 29.6 0.3 1.6 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.2 gi|147921054|ref|YP_685136.1| - 1.8e-06 28.1 0.0 2.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Ectoine_synth PF06339.7 gi|147921054|ref|YP_685136.1| - 0.0023 17.8 0.6 0.0037 17.1 0.1 1.6 2 0 0 2 2 2 1 Ectoine synthase AraC_binding PF02311.14 gi|147921054|ref|YP_685136.1| - 0.021 14.5 0.2 0.046 13.4 0.1 1.5 1 0 0 1 1 1 0 AraC-like ligand binding domain NTP_transferase PF00483.18 gi|147921055|ref|YP_685135.1| - 6.3e-35 120.6 0.0 7.4e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|147921055|ref|YP_685135.1| - 4.5e-11 43.0 0.0 6e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|147921055|ref|YP_685135.1| - 0.091 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EamA PF00892.15 gi|147921056|ref|YP_685134.1| - 5.1e-20 71.7 29.3 6.3e-15 55.3 6.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|147921056|ref|YP_685134.1| - 0.00024 21.3 8.5 0.00024 21.3 5.9 2.9 2 1 1 3 3 3 1 Multidrug resistance efflux transporter DUF4491 PF14898.1 gi|147921056|ref|YP_685134.1| - 6 7.0 10.4 0.23 11.6 0.8 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4491) Thioredoxin PF00085.15 gi|147921057|ref|YP_685133.1| - 1.7e-12 46.8 0.0 2.2e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|147921057|ref|YP_685133.1| - 0.00085 19.4 0.0 0.0058 16.8 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|147921057|ref|YP_685133.1| - 0.0021 18.0 0.1 0.0039 17.1 0.1 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|147921057|ref|YP_685133.1| - 0.0036 17.3 0.0 0.31 11.1 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|147921057|ref|YP_685133.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin NAD_synthase PF02540.12 gi|147921058|ref|YP_685132.1| - 2.9e-74 249.0 0.0 3.4e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|147921058|ref|YP_685132.1| - 3.4e-08 32.4 0.0 0.00027 19.6 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|147921058|ref|YP_685132.1| - 5.8e-06 25.9 0.0 8.2e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QRPTase_C PF01729.14 gi|147921058|ref|YP_685132.1| - 0.033 13.7 0.1 0.081 12.4 0.0 1.6 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain QueC PF06508.8 gi|147921058|ref|YP_685132.1| - 0.074 12.3 0.0 0.24 10.6 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF4277 PF14104.1 gi|147921059|ref|YP_687222.1| - 1.7e-44 150.7 0.0 3.5e-44 149.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4277) DDE_Tnp_1 PF01609.16 gi|147921059|ref|YP_687222.1| - 1.8e-11 43.9 0.1 5.8e-11 42.3 0.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain UPF0542 PF15086.1 gi|147921059|ref|YP_687222.1| - 0.033 13.9 0.4 0.082 12.6 0.3 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0542 CBM_4_9 PF02018.12 gi|147921060|ref|YP_685130.1| - 0.055 13.4 1.9 0.23 11.4 0.1 2.8 3 0 0 3 3 3 0 Carbohydrate binding domain DUF1628 PF07790.6 gi|147921060|ref|YP_685130.1| - 0.11 13.2 0.8 0.35 11.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) PLRV_ORF5 PF01690.12 gi|147921063|ref|YP_685127.1| - 0.0026 16.9 11.5 0.0043 16.2 8.0 1.3 1 0 0 1 1 1 1 Potato leaf roll virus readthrough protein Trypan_PARP PF05887.6 gi|147921063|ref|YP_685127.1| - 0.091 12.5 2.1 0.26 11.0 1.4 1.8 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Sigma_reg_N PF13800.1 gi|147921063|ref|YP_685127.1| - 0.18 11.8 1.8 4.8 7.2 0.7 2.5 2 0 0 2 2 2 0 Sigma factor regulator N-terminal TALPID3 PF15324.1 gi|147921063|ref|YP_685127.1| - 0.34 8.2 3.9 0.56 7.4 2.7 1.3 1 0 0 1 1 1 0 Hedgehog signalling target Lamp PF01299.12 gi|147921063|ref|YP_685127.1| - 2.9 6.9 13.5 6.7 5.7 5.7 2.3 2 0 0 2 2 2 0 Lysosome-associated membrane glycoprotein (Lamp) DUF1628 PF07790.6 gi|147921066|ref|YP_685124.1| - 0.036 14.8 0.3 0.43 11.3 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) Big_1 PF02369.11 gi|147921069|ref|YP_685121.1| - 1.2e-05 25.1 0.7 3.4e-05 23.6 0.5 1.8 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) Hid1 PF12722.2 gi|147921070|ref|YP_685120.1| - 0.013 13.2 0.5 0.015 13.0 0.4 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF192 PF02643.10 gi|147921072|ref|YP_685118.1| - 2.1e-20 72.4 0.0 2.3e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GPI PF06560.6 gi|147921073|ref|YP_685117.1| - 5.5e-56 188.4 0.1 7e-56 188.1 0.1 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_2 PF07883.6 gi|147921073|ref|YP_685117.1| - 0.0043 16.5 0.5 0.0089 15.5 0.4 1.7 1 1 0 1 1 1 1 Cupin domain Conotoxin PF02950.12 gi|147921075|ref|YP_685115.1| - 0.017 15.9 0.0 0.024 15.4 0.0 1.3 1 0 0 1 1 1 0 Conotoxin Cache_3 PF14827.1 gi|147921077|ref|YP_685113.1| - 0.052 13.4 0.1 1 9.3 0.0 2.3 2 0 0 2 2 2 0 Sensory domain of two-component sensor kinase adh_short PF00106.20 gi|147921079|ref|YP_685111.1| - 0.12 12.2 1.9 0.46 10.3 1.3 2.0 1 0 0 1 1 1 0 short chain dehydrogenase Radical_SAM PF04055.16 gi|147921081|ref|YP_685109.1| - 4.5e-16 59.4 0.0 6e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|147921081|ref|YP_685109.1| - 0.0026 17.7 0.1 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|147921081|ref|YP_685109.1| - 0.053 13.6 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF970 PF06153.6 gi|147921081|ref|YP_685109.1| - 0.077 12.9 0.0 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF970) CarboxypepD_reg PF13620.1 gi|147921082|ref|YP_685108.1| - 6.5e-09 35.7 0.1 1.3e-08 34.8 0.1 1.6 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921082|ref|YP_685108.1| - 2.4e-06 27.4 0.0 3.3e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) Big_1 PF02369.11 gi|147921082|ref|YP_685108.1| - 2.2e-05 24.3 0.0 3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) Dioxygenase_C PF00775.16 gi|147921082|ref|YP_685108.1| - 0.0044 16.3 0.0 0.013 14.7 0.0 1.7 1 1 0 1 1 1 1 Dioxygenase DUF290 PF01060.18 gi|147921082|ref|YP_685108.1| - 0.021 14.8 0.0 0.052 13.5 0.0 1.5 1 1 0 1 1 1 0 Transthyretin-like family DUF4198 PF10670.4 gi|147921082|ref|YP_685108.1| - 0.043 13.8 0.0 0.1 12.5 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4198) Zip PF02535.17 gi|147921083|ref|YP_685107.1| - 1.3e-05 24.4 8.0 1.3e-05 24.4 5.5 2.1 2 0 0 2 2 2 1 ZIP Zinc transporter AftA_N PF12250.3 gi|147921083|ref|YP_685107.1| - 0.19 10.3 11.8 0.22 10.2 3.0 2.1 2 0 0 2 2 2 0 Arabinofuranosyltransferase N terminal MFS_1 PF07690.11 gi|147921083|ref|YP_685107.1| - 8.2 5.0 32.2 0.011 14.4 3.9 2.4 2 1 0 2 2 2 0 Major Facilitator Superfamily Tautomerase PF01361.16 gi|147921084|ref|YP_685106.1| - 7.1e-15 54.3 0.0 7.5e-15 54.2 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|147921084|ref|YP_685106.1| - 0.00024 21.0 0.0 0.00026 20.9 0.0 1.0 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|147921084|ref|YP_685106.1| - 0.00066 19.7 0.0 0.00076 19.5 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Aldo_ket_red PF00248.16 gi|147921085|ref|YP_685105.1| - 2.9e-45 154.2 0.0 3.5e-45 154.0 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Fer4_17 PF13534.1 gi|147921085|ref|YP_685105.1| - 1.5e-10 41.2 8.6 3.1e-10 40.2 6.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921085|ref|YP_685105.1| - 1.7e-09 37.7 11.2 3.4e-09 36.8 7.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147921085|ref|YP_685105.1| - 6e-09 35.8 8.6 1.1e-08 34.9 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147921085|ref|YP_685105.1| - 1.4e-08 35.0 1.5 4.7e-05 23.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147921085|ref|YP_685105.1| - 2.6e-05 23.6 4.7 2.6e-05 23.6 3.2 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147921085|ref|YP_685105.1| - 6.9e-05 22.6 4.7 0.025 14.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147921085|ref|YP_685105.1| - 0.00035 20.3 15.5 0.0027 17.4 11.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147921085|ref|YP_685105.1| - 0.00039 20.7 13.4 0.0014 18.9 9.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921085|ref|YP_685105.1| - 0.00086 20.0 7.7 0.061 14.0 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|147921085|ref|YP_685105.1| - 0.0029 17.3 2.8 0.0029 17.3 1.9 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147921085|ref|YP_685105.1| - 0.0076 16.1 3.5 0.0076 16.1 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147921085|ref|YP_685105.1| - 0.022 15.0 16.3 0.031 14.6 2.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|147921085|ref|YP_685105.1| - 0.04 14.4 6.6 0.04 14.4 4.6 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147921085|ref|YP_685105.1| - 0.078 13.5 1.3 0.078 13.5 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|147921085|ref|YP_685105.1| - 0.082 12.5 5.3 0.083 12.5 0.2 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H_PPase PF03030.11 gi|147921086|ref|YP_685103.1| - 1e-273 909.7 54.2 1.2e-273 909.5 37.6 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Antitoxin-MazE PF04014.13 gi|147921087|ref|YP_685102.1| - 0.00023 20.8 0.3 0.00052 19.6 0.2 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF4388 PF14332.1 gi|147921087|ref|YP_685102.1| - 0.0044 16.8 0.0 0.76 9.6 0.0 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4388) HpaP PF09483.5 gi|147921087|ref|YP_685102.1| - 0.006 16.5 2.6 0.0089 15.9 1.8 1.3 1 0 0 1 1 1 1 Type III secretion protein (HpaP) HlyIII PF03006.15 gi|147921088|ref|YP_685101.1| - 0.067 12.5 7.0 0.083 12.2 4.9 1.0 1 0 0 1 1 1 0 Haemolysin-III related Glucos_trans_II PF14264.1 gi|147921088|ref|YP_685101.1| - 0.89 8.4 12.9 1 8.2 8.9 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF981 PF06168.6 gi|147921088|ref|YP_685101.1| - 1.2 8.8 11.4 1.4 8.6 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) PsbN PF02468.10 gi|147921088|ref|YP_685101.1| - 7.7 6.2 8.2 6.8 6.3 2.4 2.3 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) Radical_SAM PF04055.16 gi|147921089|ref|YP_685100.1| - 5.8e-23 81.8 0.0 6.7e-22 78.4 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|147921089|ref|YP_685100.1| - 1.5e-09 37.7 0.0 3e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain Peptidase_S49 PF01343.13 gi|147921090|ref|YP_685099.1| - 1.8e-43 147.9 0.1 2.5e-43 147.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|147921090|ref|YP_685099.1| - 1.5e-09 37.7 0.1 4e-07 29.8 0.0 2.2 2 0 0 2 2 2 2 Clp protease Bro-N PF02498.12 gi|147921090|ref|YP_685099.1| - 0.02 15.1 0.0 7 7.0 0.0 2.6 2 1 0 2 2 2 0 BRO family, N-terminal domain TipAS PF07739.8 gi|147921090|ref|YP_685099.1| - 0.029 14.7 0.0 0.066 13.5 0.0 1.6 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain SDH_sah PF01972.11 gi|147921090|ref|YP_685099.1| - 0.06 12.1 0.0 0.091 11.5 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase MarR_2 PF12802.2 gi|147921091|ref|YP_685098.1| - 0.024 14.3 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_17 PF12728.2 gi|147921091|ref|YP_685098.1| - 0.025 14.8 0.1 0.038 14.2 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|147921091|ref|YP_685098.1| - 0.058 13.4 0.1 0.13 12.3 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|147921091|ref|YP_685098.1| - 0.091 12.9 0.1 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Phage_rep_O PF04492.8 gi|147921091|ref|YP_685098.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O MarR PF01047.17 gi|147921091|ref|YP_685098.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family PA14 PF07691.7 gi|147921092|ref|YP_685097.1| - 3.5e-17 62.3 0.0 4.9e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 PA14 domain DUF1628 PF07790.6 gi|147921093|ref|YP_685096.1| - 1.3e-07 32.2 3.9 1.8e-07 31.7 1.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) MacB_PCD PF12704.2 gi|147921093|ref|YP_685096.1| - 0.25 10.9 3.2 0.36 10.3 2.2 1.3 1 1 0 1 1 1 0 MacB-like periplasmic core domain Flavodoxin_5 PF12724.2 gi|147921094|ref|YP_685095.1| - 3.2e-18 66.1 0.0 4e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|147921094|ref|YP_685095.1| - 5.7e-07 29.0 0.0 6.8e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|147921094|ref|YP_685095.1| - 2e-06 27.8 0.0 2.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|147921094|ref|YP_685095.1| - 9.1e-06 25.2 0.0 0.00023 20.7 0.0 2.3 1 1 1 2 2 2 1 NADPH-dependent FMN reductase Flavodoxin_4 PF12682.2 gi|147921094|ref|YP_685095.1| - 0.0033 16.7 0.1 1.4 8.2 0.0 2.2 1 1 1 2 2 2 2 Flavodoxin dCMP_cyt_deam_1 PF00383.17 gi|147921095|ref|YP_685094.1| - 6.2e-30 102.8 2.7 9.3e-30 102.2 1.9 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region Bd3614-deam PF14439.1 gi|147921095|ref|YP_685094.1| - 0.0074 16.1 1.3 0.01 15.7 0.2 1.8 2 1 1 3 3 3 1 Bd3614-like deaminase XOO_2897-deam PF14440.1 gi|147921095|ref|YP_685094.1| - 0.011 15.4 0.6 0.015 15.0 0.4 1.4 1 1 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase APOBEC_N PF08210.6 gi|147921095|ref|YP_685094.1| - 0.018 14.6 0.6 0.031 13.9 0.4 1.4 1 0 0 1 1 1 0 APOBEC-like N-terminal domain MafB19-deam PF14437.1 gi|147921095|ref|YP_685094.1| - 0.056 13.0 1.7 0.07 12.7 1.2 1.2 1 0 0 1 1 1 0 MafB19-like deaminase DUF4388 PF14332.1 gi|147921095|ref|YP_685094.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4388) zf-C3HC4 PF00097.20 gi|147921095|ref|YP_685094.1| - 0.66 9.6 4.7 0.35 10.5 1.2 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DS PF01916.12 gi|147921096|ref|YP_685093.1| - 2.5e-71 240.2 0.4 3e-71 239.9 0.3 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase HC2 PF07382.6 gi|147921096|ref|YP_685093.1| - 0.045 13.6 26.7 0.076 12.8 18.5 1.3 1 0 0 1 1 1 0 Histone H1-like nucleoprotein HC2 EBP50_C-term PF09007.6 gi|147921096|ref|YP_685093.1| - 0.17 11.7 0.0 0.17 11.7 0.0 2.5 2 1 0 2 2 2 0 EBP50, C-terminal DUF128 PF01995.11 gi|147921097|ref|YP_685092.1| - 1.5e-94 315.3 0.2 1.7e-94 315.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF128 Mrr_cat PF04471.7 gi|147921098|ref|YP_685091.1| - 3.3e-05 23.6 0.1 7.7e-05 22.4 0.1 1.6 1 0 0 1 1 1 1 Restriction endonuclease DUF4349 PF14257.1 gi|147921099|ref|YP_685090.1| - 3e-75 252.8 0.1 4.5e-75 252.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DUF4097 PF13349.1 gi|147921099|ref|YP_685090.1| - 0.16 11.5 5.5 0.24 10.9 0.6 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4097) IncA PF04156.9 gi|147921099|ref|YP_685090.1| - 1.9 8.0 14.3 2.7 7.5 0.0 3.7 3 1 1 4 4 4 0 IncA protein NTP_transferase PF00483.18 gi|147921100|ref|YP_685089.1| - 4.4e-46 157.1 0.0 5.4e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|147921100|ref|YP_685089.1| - 6.7e-22 75.9 28.0 2.3e-07 30.0 1.3 5.6 1 1 4 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|147921100|ref|YP_685089.1| - 4.5e-10 39.8 0.0 6.7e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|147921100|ref|YP_685089.1| - 4.8e-09 35.6 30.4 0.001 18.5 5.7 5.2 1 1 4 5 5 5 5 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.8 gi|147921100|ref|YP_685089.1| - 0.22 11.5 3.7 0.33 10.9 1.1 2.1 1 1 1 2 2 2 0 Polymer-forming cytoskeletal Fucokinase PF07959.7 gi|147921100|ref|YP_685089.1| - 1.8 7.0 4.6 2.6 6.5 0.4 2.3 1 1 0 2 2 2 0 L-fucokinase HSP20 PF00011.16 gi|147921102|ref|YP_685087.1| - 2.2e-21 75.5 0.1 2.9e-21 75.2 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|147921102|ref|YP_685087.1| - 0.00075 19.1 0.2 0.007 16.0 0.1 2.1 2 0 0 2 2 2 1 GvpH CS PF04969.11 gi|147921102|ref|YP_685087.1| - 0.0011 19.4 0.0 0.0024 18.3 0.0 1.5 1 1 0 1 1 1 1 CS domain PIH1 PF08190.7 gi|147921102|ref|YP_685087.1| - 0.0045 16.4 0.0 0.0056 16.1 0.0 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 PAT1 PF09770.4 gi|147921103|ref|YP_685086.1| - 6.9 4.7 18.8 6.9 4.7 13.1 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 TFIIA PF03153.8 gi|147921103|ref|YP_685086.1| - 8.1 6.2 14.3 9.2 6.0 9.9 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Macoilin PF09726.4 gi|147921103|ref|YP_685086.1| - 9.3 4.3 8.8 9.7 4.3 6.1 1.0 1 0 0 1 1 1 0 Transmembrane protein Robl_LC7 PF03259.12 gi|147921104|ref|YP_685085.1| - 2.7e-12 46.0 0.2 3.4e-12 45.7 0.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain KaiC PF06745.8 gi|147921105|ref|YP_685084.1| - 2.2e-14 53.1 0.0 2.4e-13 49.7 0.0 2.2 2 0 0 2 2 2 1 KaiC Arf PF00025.16 gi|147921105|ref|YP_685084.1| - 2.2e-11 43.3 0.0 3.4e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|147921105|ref|YP_685084.1| - 8.8e-11 42.3 0.0 3.3e-09 37.2 0.0 2.6 3 1 1 4 4 3 1 Miro-like protein Ras PF00071.17 gi|147921105|ref|YP_685084.1| - 5.7e-10 38.8 0.0 1.5e-09 37.4 0.0 1.7 2 0 0 2 2 2 1 Ras family ATP_bind_1 PF03029.12 gi|147921105|ref|YP_685084.1| - 7.2e-07 28.9 0.5 0.00063 19.3 0.0 2.3 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein SRPRB PF09439.5 gi|147921105|ref|YP_685084.1| - 1.6e-05 24.1 0.0 4.1e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|147921105|ref|YP_685084.1| - 0.00011 21.7 0.4 0.0011 18.4 0.3 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|147921105|ref|YP_685084.1| - 0.00033 20.5 0.0 0.0023 17.8 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase B12-binding PF02310.14 gi|147921105|ref|YP_685084.1| - 0.007 16.2 0.0 0.86 9.4 0.0 2.5 2 0 0 2 2 2 1 B12 binding domain Gtr1_RagA PF04670.7 gi|147921105|ref|YP_685084.1| - 0.0079 15.3 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region AAA_28 PF13521.1 gi|147921105|ref|YP_685084.1| - 0.021 14.7 0.1 0.053 13.4 0.1 1.7 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|147921105|ref|YP_685084.1| - 0.022 14.4 0.1 0.053 13.2 0.1 1.7 1 0 0 1 1 1 0 NTPase AAA_25 PF13481.1 gi|147921105|ref|YP_685084.1| - 0.026 13.9 0.2 7.4 5.9 0.0 2.8 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|147921105|ref|YP_685084.1| - 0.035 13.8 0.5 0.26 11.0 0.4 2.2 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|147921105|ref|YP_685084.1| - 0.089 11.6 0.6 0.15 10.9 0.4 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein PAXNEB PF05625.6 gi|147921105|ref|YP_685084.1| - 0.093 11.5 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein AAA_33 PF13671.1 gi|147921105|ref|YP_685084.1| - 0.13 12.1 0.1 0.35 10.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|147921105|ref|YP_685084.1| - 0.16 11.8 0.0 0.71 9.7 0.0 2.1 3 0 0 3 3 1 0 AAA domain AAA_17 PF13207.1 gi|147921105|ref|YP_685084.1| - 0.3 11.9 2.0 0.94 10.3 0.6 2.3 2 1 0 2 2 2 0 AAA domain AMMECR1 PF01871.12 gi|147921107|ref|YP_685082.1| - 1.4e-58 196.7 0.0 1.7e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PhoU_div PF01865.11 gi|147921108|ref|YP_685081.1| - 2.5e-49 167.3 6.2 2.8e-49 167.2 4.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|147921108|ref|YP_685081.1| - 0.0049 17.2 3.1 0.22 12.0 0.1 2.4 2 1 0 2 2 2 1 PhoU domain DnaB PF00772.16 gi|147921108|ref|YP_685081.1| - 0.037 13.8 0.8 0.12 12.2 0.2 2.0 1 1 1 2 2 2 0 DnaB-like helicase N terminal domain NPV_P10 PF05531.7 gi|147921108|ref|YP_685081.1| - 0.22 11.7 8.6 0.34 11.1 2.4 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein GM_CSF PF01109.12 gi|147921108|ref|YP_685081.1| - 0.27 11.1 1.9 0.39 10.6 0.3 2.0 2 0 0 2 2 2 0 Granulocyte-macrophage colony-stimulating factor Orthopox_A5L PF06193.6 gi|147921108|ref|YP_685081.1| - 6.9 6.5 7.1 20 5.0 4.9 1.8 1 1 0 1 1 1 0 Orthopoxvirus A5L protein-like PHO4 PF01384.15 gi|147921109|ref|YP_685080.1| - 1.9e-87 292.9 43.2 2.4e-87 292.6 30.0 1.1 1 0 0 1 1 1 1 Phosphate transporter family Myc_target_1 PF15179.1 gi|147921109|ref|YP_685080.1| - 0.72 9.4 5.0 5.8 6.4 0.4 2.4 2 0 0 2 2 2 0 Myc target protein 1 DUF4131 PF13567.1 gi|147921109|ref|YP_685080.1| - 2.8 7.3 5.9 33 3.8 4.1 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Amidohydro_4 PF13147.1 gi|147921110|ref|YP_685079.1| - 6.8e-37 127.9 1.9 8.7e-37 127.6 1.3 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|147921110|ref|YP_685079.1| - 2.7e-23 83.1 0.1 5.2e-23 82.2 0.1 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|147921110|ref|YP_685079.1| - 3.9e-14 52.2 0.0 1e-13 50.8 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|147921110|ref|YP_685079.1| - 2.7e-07 30.1 0.6 6.2e-05 22.3 0.2 2.8 2 1 0 2 2 2 2 Amidohydrolase family DUF167 PF02594.11 gi|147921111|ref|YP_685078.1| - 6.8e-21 73.9 0.0 8.6e-21 73.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 DUF2805 PF10985.3 gi|147921111|ref|YP_685078.1| - 0.033 14.1 0.0 0.67 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) Toprim PF01751.17 gi|147921112|ref|YP_685077.1| - 0.0015 18.4 0.1 0.0059 16.5 0.0 2.0 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|147921112|ref|YP_685077.1| - 0.0032 17.4 0.0 0.0063 16.5 0.0 1.5 1 1 0 1 1 1 1 Toprim domain Toprim_4 PF13662.1 gi|147921113|ref|YP_685076.1| - 1.4e-10 41.0 0.2 4.3e-10 39.4 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|147921113|ref|YP_685076.1| - 6.9e-07 29.1 1.7 5.9e-05 22.9 0.1 3.1 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|147921113|ref|YP_685076.1| - 0.018 15.3 0.0 0.048 13.9 0.0 1.8 1 0 0 1 1 1 0 Toprim-like TFIIA PF03153.8 gi|147921113|ref|YP_685076.1| - 0.81 9.5 10.6 1.2 9.0 7.3 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF2422 PF10337.4 gi|147921113|ref|YP_685076.1| - 7.8 5.1 11.6 2.4 6.8 5.5 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2422) UPF0058 PF01893.11 gi|147921114|ref|YP_685075.1| - 4.1e-28 97.2 0.2 4.4e-28 97.1 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Phage_endo_I PF05367.6 gi|147921114|ref|YP_685075.1| - 0.1 11.9 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Phage endonuclease I Acetyltransf_1 PF00583.19 gi|147921115|ref|YP_685074.1| - 5.2e-12 45.6 0.2 7.4e-12 45.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|147921115|ref|YP_685074.1| - 1.2e-08 34.9 0.2 1.9e-08 34.3 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147921115|ref|YP_685074.1| - 1.8e-08 34.5 0.0 2.3e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147921115|ref|YP_685074.1| - 3.3e-07 30.2 0.0 1.1e-06 28.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147921115|ref|YP_685074.1| - 1.5e-06 28.2 0.1 2e-06 27.8 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147921115|ref|YP_685074.1| - 0.0078 15.9 0.0 0.015 15.0 0.1 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|147921115|ref|YP_685074.1| - 0.013 15.3 0.0 0.053 13.3 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0146 PF03686.8 gi|147921116|ref|YP_685073.1| - 2.1e-33 114.8 0.0 2.4e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|147921116|ref|YP_685073.1| - 0.07 12.8 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Isochorismatase PF00857.15 gi|147921119|ref|YP_685070.1| - 1.2e-39 136.0 0.1 1.3e-39 135.9 0.1 1.1 1 0 0 1 1 1 1 Isochorismatase family H2TH PF06831.9 gi|147921120|ref|YP_685069.1| - 2.6e-21 75.1 0.0 4.1e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Fapy_DNA_glyco PF01149.19 gi|147921120|ref|YP_685069.1| - 1.1e-15 57.9 0.0 1.9e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase N-terminal domain zf-FPG_IleRS PF06827.9 gi|147921120|ref|YP_685069.1| - 8.7e-09 34.8 1.3 2.1e-08 33.6 0.9 1.7 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS FbpA PF05833.6 gi|147921120|ref|YP_685069.1| - 4.6e-06 25.4 0.0 0.00029 19.5 0.0 2.1 2 0 0 2 2 2 2 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|147921120|ref|YP_685069.1| - 0.0016 18.8 0.0 0.0034 17.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S13/S18 zf-TFIIB PF13453.1 gi|147921120|ref|YP_685069.1| - 0.019 14.1 2.4 0.036 13.2 1.6 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.7 gi|147921120|ref|YP_685069.1| - 0.045 13.5 1.3 0.045 13.5 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbons DUF4428 PF14471.1 gi|147921120|ref|YP_685069.1| - 0.59 9.9 5.7 0.65 9.7 0.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) UPF0547 PF10571.4 gi|147921120|ref|YP_685069.1| - 0.65 9.7 3.0 1.5 8.6 2.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF3397 PF11877.3 gi|147921121|ref|YP_685068.1| - 0.014 15.3 6.1 0.014 15.3 4.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3397) DUF2178 PF09946.4 gi|147921121|ref|YP_685068.1| - 8.3 6.2 9.8 0.55 9.9 1.2 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2178) GatB_N PF02934.10 gi|147921122|ref|YP_685067.1| - 6.3e-72 241.8 0.1 8.7e-72 241.4 0.1 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|147921122|ref|YP_685067.1| - 2.9e-26 91.9 1.2 2.9e-26 91.9 0.8 1.8 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|147921122|ref|YP_685067.1| - 5.6e-15 55.2 4.8 7.2e-15 54.9 0.1 3.1 3 1 1 4 4 4 1 GAD domain YqeY PF09424.5 gi|147921122|ref|YP_685067.1| - 6.3e-05 22.8 0.8 6.3e-05 22.8 0.6 1.9 2 0 0 2 2 2 1 Yqey-like protein Memo PF01875.12 gi|147921122|ref|YP_685067.1| - 0.041 12.7 0.0 0.08 11.8 0.0 1.4 1 0 0 1 1 1 0 Memo-like protein Asparaginase PF00710.15 gi|147921123|ref|YP_685066.1| - 1.4e-91 306.6 1.1 1.7e-91 306.3 0.7 1.0 1 0 0 1 1 1 1 Asparaginase Lyase_1 PF00206.15 gi|147921124|ref|YP_685065.1| - 5.9e-63 212.9 0.0 7.7e-63 212.5 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|147921124|ref|YP_685065.1| - 1.9e-11 43.8 0.0 7.9e-11 41.8 0.0 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal PAF-AH_p_II PF03403.8 gi|147921125|ref|YP_685064.1| - 1.5e-12 46.5 0.0 1.9e-11 42.9 0.0 2.4 1 1 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II Abhydrolase_5 PF12695.2 gi|147921125|ref|YP_685064.1| - 1.1e-10 41.4 0.0 4.1e-10 39.5 0.0 2.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Radical_SAM PF04055.16 gi|147921126|ref|YP_685063.1| - 1.2e-22 80.7 0.0 2.3e-22 79.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147921126|ref|YP_685063.1| - 3.9e-05 23.8 0.0 6.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147921126|ref|YP_685063.1| - 0.00012 22.0 0.0 0.00022 21.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fcf1 PF04900.7 gi|147921126|ref|YP_685063.1| - 0.048 13.7 0.1 0.28 11.2 0.0 2.3 2 0 0 2 2 2 0 Fcf1 Peptidase_S8 PF00082.17 gi|147921129|ref|YP_685060.1| - 1.3e-64 218.1 3.2 2.7e-64 217.0 2.2 1.6 1 0 0 1 1 1 1 Subtilase family Lactonase PF10282.4 gi|147921129|ref|YP_685060.1| - 1.3e-19 70.4 1.3 5.1e-07 29.1 0.0 3.5 1 1 1 3 3 3 3 Lactonase, 7-bladed beta-propeller Inhibitor_I9 PF05922.11 gi|147921129|ref|YP_685060.1| - 1.3e-10 41.6 0.2 2.7e-10 40.6 0.2 1.5 1 0 0 1 1 1 1 Peptidase inhibitor I9 Cytochrom_D1 PF02239.11 gi|147921129|ref|YP_685060.1| - 3.4e-09 35.4 1.3 0.00029 19.2 0.1 2.4 1 1 0 2 2 2 2 Cytochrome D1 heme domain SGL PF08450.7 gi|147921129|ref|YP_685060.1| - 2.2e-05 23.9 0.4 1.7 7.9 0.0 4.0 1 1 4 5 5 5 2 SMP-30/Gluconolaconase/LRE-like region Arylesterase PF01731.15 gi|147921129|ref|YP_685060.1| - 2.6e-05 24.0 1.1 6.9 6.7 0.0 5.4 4 1 1 5 5 5 1 Arylesterase PD40 PF07676.7 gi|147921129|ref|YP_685060.1| - 0.00018 21.0 0.2 0.37 10.5 0.0 4.4 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat NHL PF01436.16 gi|147921129|ref|YP_685060.1| - 0.0035 17.2 15.6 0.16 11.9 0.0 6.3 7 0 0 7 7 7 1 NHL repeat Borrelia_lipo_2 PF06238.6 gi|147921129|ref|YP_685060.1| - 0.0098 15.9 0.0 0.023 14.7 0.0 1.6 1 0 0 1 1 1 1 Borrelia burgdorferi BBR25 lipoprotein Beta_propel PF09826.4 gi|147921129|ref|YP_685060.1| - 0.042 12.1 0.0 1.2 7.4 0.0 2.3 1 1 0 2 2 2 0 Beta propeller domain DUF1513 PF07433.6 gi|147921129|ref|YP_685060.1| - 0.071 11.9 0.2 1.2 7.9 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1513) DUF4221 PF13970.1 gi|147921129|ref|YP_685060.1| - 0.25 10.6 0.1 28 3.9 0.0 3.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4221) Fanconi_A PF03511.9 gi|147921130|ref|YP_685059.1| - 0.075 12.8 2.7 0.31 10.8 1.7 2.0 1 1 0 1 1 1 0 Fanconi anaemia group A protein Acetyltransf_6 PF13480.1 gi|147921131|ref|YP_685058.1| - 6.7e-05 22.8 0.0 0.00012 22.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|147921132|ref|YP_685057.1| - 4.3e-12 46.1 0.0 1.2e-11 44.7 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147921132|ref|YP_685057.1| - 0.0034 16.1 0.0 0.072 11.7 0.0 2.5 3 0 0 3 3 3 1 FemAB family NAAA-beta PF15508.1 gi|147921132|ref|YP_685057.1| - 0.059 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase FemAB PF02388.11 gi|147921133|ref|YP_685056.1| - 2.8e-10 39.4 0.3 3.9e-05 22.5 0.0 3.0 2 1 0 3 3 3 3 FemAB family Acetyltransf_6 PF13480.1 gi|147921133|ref|YP_685056.1| - 3.1e-09 36.9 0.0 5.9e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|147921134|ref|YP_685055.1| - 5.3e-16 58.8 0.2 1.9e-15 57.0 0.2 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|147921134|ref|YP_685055.1| - 7.4e-09 34.7 0.2 0.00085 18.1 0.1 3.1 3 0 0 3 3 3 3 FemAB family DUF482 PF04339.7 gi|147921134|ref|YP_685055.1| - 0.00084 18.3 0.1 0.0033 16.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function, DUF482 FemAB PF02388.11 gi|147921135|ref|YP_685054.1| - 2.6e-11 42.8 5.9 4.6e-06 25.5 0.2 3.1 2 1 1 3 3 3 3 FemAB family Acetyltransf_6 PF13480.1 gi|147921135|ref|YP_685054.1| - 5.9e-11 42.4 0.0 9.8e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF1514 PF07438.6 gi|147921135|ref|YP_685054.1| - 0.078 12.9 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1514) Acetyltransf_1 PF00583.19 gi|147921136|ref|YP_685053.1| - 3.2e-15 55.9 0.1 6e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Peptidase_M48 PF01435.13 gi|147921136|ref|YP_685053.1| - 3.9e-14 52.7 0.0 5.9e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Acetyltransf_7 PF13508.1 gi|147921136|ref|YP_685053.1| - 4.4e-09 36.3 0.0 8.1e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147921136|ref|YP_685053.1| - 3.5e-07 30.3 0.0 5.7e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147921136|ref|YP_685053.1| - 1.1e-05 25.1 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Peptidase_M56 PF05569.6 gi|147921136|ref|YP_685053.1| - 3.8e-05 22.7 0.0 5.6e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 Acetyltransf_6 PF13480.1 gi|147921136|ref|YP_685053.1| - 0.00043 20.2 0.0 0.0026 17.7 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147921136|ref|YP_685053.1| - 0.003 17.4 0.0 0.0047 16.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147921136|ref|YP_685053.1| - 0.0041 16.9 0.0 0.0081 16.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|147921136|ref|YP_685053.1| - 0.009 15.9 0.0 0.019 14.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147921136|ref|YP_685053.1| - 0.013 15.3 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Gemini_mov PF01708.11 gi|147921136|ref|YP_685053.1| - 0.03 13.8 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Geminivirus putative movement protein Alginate_lyase PF05426.7 gi|147921137|ref|YP_685052.1| - 0.076 12.3 1.1 0.97 8.7 0.1 2.3 2 0 0 2 2 2 0 Alginate lyase GPI2 PF06432.6 gi|147921139|ref|YP_685050.1| - 0.37 10.0 2.5 0.44 9.8 1.8 1.1 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase PilX_N PF14341.1 gi|147921139|ref|YP_685050.1| - 1.1 9.0 4.3 2.9 7.6 0.0 2.4 1 1 1 2 2 2 0 PilX N-terminal DUF3329 PF11808.3 gi|147921139|ref|YP_685050.1| - 9.4 6.4 6.6 5.6 7.1 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3329) Lipase_GDSL_2 PF13472.1 gi|147921140|ref|YP_685049.1| - 3.1e-08 33.9 0.0 7.4e-08 32.7 0.0 1.6 2 1 0 2 2 2 1 GDSL-like Lipase/Acylhydrolase family Polysacc_synt PF01943.12 gi|147921142|ref|YP_685047.1| - 1.7e-10 40.6 38.1 1.7e-10 40.6 26.4 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|147921142|ref|YP_685047.1| - 2.2e-09 37.1 32.8 2.2e-09 37.1 22.7 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|147921142|ref|YP_685047.1| - 0.13 12.0 53.6 0.2 11.4 8.6 4.1 3 1 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain Acetyltransf_6 PF13480.1 gi|147921143|ref|YP_685046.1| - 1e-13 51.4 0.5 2.1e-13 50.4 0.1 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF354 PF04007.7 gi|147921144|ref|YP_685045.1| - 2.8e-21 75.7 0.0 4.1e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) DUF3473 PF11959.3 gi|147921145|ref|YP_685044.1| - 1.2e-05 24.7 0.0 1.5e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|147921146|ref|YP_685043.1| - 1.1e-19 70.2 0.0 1.3e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF3473 PF11959.3 gi|147921146|ref|YP_685043.1| - 9e-06 25.1 0.0 1.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) PIG-L PF02585.12 gi|147921147|ref|YP_685042.1| - 4.1e-20 72.5 0.0 6.5e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase VASP_tetra PF08776.6 gi|147921147|ref|YP_685042.1| - 0.022 14.0 0.7 0.041 13.1 0.5 1.4 1 0 0 1 1 1 0 VASP tetramerisation domain TcdA_TcdB PF12919.2 gi|147921147|ref|YP_685042.1| - 0.062 11.7 0.2 0.078 11.4 0.1 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain WbqC PF08889.6 gi|147921148|ref|YP_685041.1| - 9.4e-74 247.5 0.2 1.1e-73 247.3 0.1 1.0 1 0 0 1 1 1 1 WbqC-like protein family HTH_33 PF13592.1 gi|147921149|ref|YP_685040.1| - 0.038 13.5 0.1 3.4 7.2 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn helix DUF1616 PF07760.6 gi|147921150|ref|YP_685039.1| - 1.4e-87 293.5 3.4 1.6e-87 293.3 2.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) MFS_1 PF07690.11 gi|147921150|ref|YP_685039.1| - 2.2e-06 26.6 11.5 3.1e-06 26.1 8.0 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily APH PF01636.18 gi|147921151|ref|YP_685038.1| - 1.9e-08 34.3 0.1 0.0017 18.1 0.1 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|147921151|ref|YP_685038.1| - 2.5e-06 26.9 0.0 4.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|147921151|ref|YP_685038.1| - 1.1e-05 24.7 0.0 1.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|147921151|ref|YP_685038.1| - 0.007 15.6 0.1 0.023 13.9 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|147921151|ref|YP_685038.1| - 0.032 13.2 0.0 0.065 12.2 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|147921152|ref|YP_685037.1| - 3e-07 30.4 0.2 0.009 15.7 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|147921152|ref|YP_685037.1| - 1.8e-06 27.3 0.0 3.7e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.17 gi|147921152|ref|YP_685037.1| - 2.9e-06 26.7 0.1 4.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family WaaY PF06176.6 gi|147921152|ref|YP_685037.1| - 0.0004 19.6 0.1 0.0008 18.6 0.1 1.5 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kdo PF06293.9 gi|147921152|ref|YP_685037.1| - 0.0005 19.1 0.1 0.0015 17.6 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.15 gi|147921152|ref|YP_685037.1| - 0.16 11.5 0.2 1.7 8.1 0.1 2.3 2 1 1 3 3 3 0 Choline/ethanolamine kinase ILVD_EDD PF00920.16 gi|147921153|ref|YP_685036.1| - 3.8e-185 616.2 0.0 4.3e-185 616.0 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family AIRC PF00731.15 gi|147921154|ref|YP_685035.1| - 5.6e-45 152.2 2.5 6.2e-45 152.1 1.7 1.0 1 0 0 1 1 1 1 AIR carboxylase DXP_reductoisom PF02670.11 gi|147921154|ref|YP_685035.1| - 0.037 14.5 0.0 0.052 14.0 0.0 1.5 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase YrhC PF14143.1 gi|147921155|ref|YP_685034.1| - 0.0047 16.8 2.0 0.0065 16.3 1.4 1.3 1 0 0 1 1 1 1 YrhC-like protein Pox_P21 PF05313.7 gi|147921155|ref|YP_685034.1| - 0.048 12.9 2.0 0.059 12.6 1.4 1.2 1 0 0 1 1 1 0 Poxvirus P21 membrane protein DUF2427 PF10348.4 gi|147921155|ref|YP_685034.1| - 0.062 12.8 1.4 0.08 12.5 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF3784 PF12650.2 gi|147921155|ref|YP_685034.1| - 0.068 13.1 4.1 0.079 12.9 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF2393 PF09624.5 gi|147921155|ref|YP_685034.1| - 0.13 11.8 2.1 0.16 11.5 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) SieB PF14163.1 gi|147921155|ref|YP_685034.1| - 0.19 11.2 3.2 0.22 11.0 2.0 1.3 1 1 0 1 1 1 0 Superinfection exclusion protein B DUF1469 PF07332.6 gi|147921155|ref|YP_685034.1| - 0.24 11.1 3.1 0.29 10.8 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Arif-1 PF06770.6 gi|147921155|ref|YP_685034.1| - 0.25 10.6 2.1 0.26 10.6 1.4 1.0 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) DUF2244 PF10003.4 gi|147921155|ref|YP_685034.1| - 0.27 10.6 2.7 0.29 10.4 1.9 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) PepSY_TM PF03929.11 gi|147921155|ref|YP_685034.1| - 0.32 11.4 5.1 6.7 7.3 0.4 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix SdpI PF13630.1 gi|147921155|ref|YP_685034.1| - 0.96 9.1 5.3 1.2 8.8 3.7 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family CcmD PF04995.9 gi|147921155|ref|YP_685034.1| - 8.7 6.1 6.3 4.6 7.0 0.5 2.3 1 1 1 2 2 2 0 Heme exporter protein D (CcmD) Transpep_BrtH PF14399.1 gi|147921157|ref|YP_685032.1| - 2.4e-87 293.1 0.0 2.7e-87 293.0 0.0 1.0 1 0 0 1 1 1 1 NlpC/p60-like transpeptidase DEAD_assoc PF08494.6 gi|147921158|ref|YP_685031.1| - 3.7e-44 150.7 0.0 7e-44 149.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|147921158|ref|YP_685031.1| - 5e-33 113.9 0.0 4.1e-31 107.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147921158|ref|YP_685031.1| - 4.9e-19 67.9 0.1 1.4e-17 63.3 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|147921158|ref|YP_685031.1| - 1.1e-07 31.9 0.0 2.2e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|147921158|ref|YP_685031.1| - 8.5e-07 28.0 0.0 1.6e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|147921158|ref|YP_685031.1| - 0.0016 17.8 0.3 0.0057 16.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|147921158|ref|YP_685031.1| - 0.0017 17.6 0.1 0.042 13.0 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|147921158|ref|YP_685031.1| - 0.0092 16.1 0.1 0.052 13.6 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|147921158|ref|YP_685031.1| - 0.016 14.9 0.0 0.076 12.7 0.0 2.2 1 1 1 2 2 2 0 Part of AAA domain Zn-ribbon_8 PF09723.5 gi|147921158|ref|YP_685031.1| - 0.049 13.6 1.1 0.12 12.3 0.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain YdjO PF14169.1 gi|147921158|ref|YP_685031.1| - 0.11 12.0 0.1 0.36 10.3 0.0 1.8 1 0 0 1 1 1 0 Cold-inducible protein YdjO RRM PF10378.4 gi|147921159|ref|YP_685030.1| - 0.0092 15.5 0.8 0.02 14.4 0.6 1.5 1 0 0 1 1 1 1 Putative RRM domain DUF108 PF01958.13 gi|147921160|ref|YP_685029.1| - 6.1e-34 116.1 0.4 1.2e-33 115.1 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.11 gi|147921160|ref|YP_685029.1| - 1e-21 77.4 0.9 1.6e-21 76.8 0.2 1.6 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|147921160|ref|YP_685029.1| - 9.6e-07 29.3 0.2 3.9e-06 27.3 0.1 1.9 1 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|147921160|ref|YP_685029.1| - 1.1e-05 25.7 1.5 2.6e-05 24.5 1.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|147921160|ref|YP_685029.1| - 0.001 18.2 0.1 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|147921160|ref|YP_685029.1| - 0.002 18.2 0.2 0.0043 17.1 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|147921160|ref|YP_685029.1| - 0.013 15.1 1.6 0.96 9.0 0.8 2.5 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.19 gi|147921160|ref|YP_685029.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ThiF PF00899.16 gi|147921160|ref|YP_685029.1| - 0.19 11.5 1.1 2 8.2 0.2 2.3 1 1 1 2 2 2 0 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|147921160|ref|YP_685029.1| - 0.32 10.7 2.8 2.7 7.6 2.0 2.1 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus QRPTase_C PF01729.14 gi|147921161|ref|YP_685028.1| - 4e-58 195.6 0.7 4.9e-58 195.3 0.5 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|147921161|ref|YP_685028.1| - 5.1e-26 90.3 0.0 3.1e-24 84.6 0.0 2.2 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|147921161|ref|YP_685028.1| - 0.016 14.3 0.3 0.028 13.5 0.1 1.4 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Biotin_lipoyl_2 PF13533.1 gi|147921161|ref|YP_685028.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Biotin-lipoyl like AAA_26 PF13500.1 gi|147921162|ref|YP_685027.1| - 3.1e-33 115.0 0.3 9.1e-33 113.5 0.1 1.8 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.7 gi|147921162|ref|YP_685027.1| - 1.2e-27 95.5 0.2 2.6e-27 94.4 0.1 1.6 1 0 0 1 1 1 1 DRTGG domain CbiA PF01656.18 gi|147921162|ref|YP_685027.1| - 0.00039 19.8 0.8 0.001 18.5 0.6 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CW_binding_2 PF04122.7 gi|147921162|ref|YP_685027.1| - 0.0019 18.3 0.9 3.4 7.9 0.0 4.1 2 2 2 4 4 4 1 Putative cell wall binding repeat 2 Hpr_kinase_N PF02603.11 gi|147921162|ref|YP_685027.1| - 0.0075 15.9 0.0 0.03 14.0 0.0 2.0 2 0 0 2 2 2 1 HPr Serine kinase N terminus MobB PF03205.9 gi|147921162|ref|YP_685027.1| - 0.0077 15.9 0.1 0.088 12.5 0.1 2.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.1 gi|147921162|ref|YP_685027.1| - 0.045 13.6 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Flu_B_M2 PF04772.7 gi|147921162|ref|YP_685027.1| - 0.045 13.8 0.8 4.3 7.4 0.0 3.1 3 0 0 3 3 3 0 Influenza B matrix protein 2 (BM2) RuBisCO_large PF00016.15 gi|147921163|ref|YP_685026.1| - 6.2e-64 215.7 0.6 6.9e-63 212.3 0.4 2.0 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|147921163|ref|YP_685026.1| - 3.4e-09 36.4 0.3 3.7e-08 33.1 0.1 2.5 2 2 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Glycos_transf_1 PF00534.15 gi|147921164|ref|YP_685025.1| - 9e-26 90.3 0.0 1.5e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921164|ref|YP_685025.1| - 6.2e-14 52.3 0.0 1.5e-13 51.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921164|ref|YP_685025.1| - 2.9e-08 33.6 0.1 1.4e-07 31.4 0.1 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|147921164|ref|YP_685025.1| - 0.053 13.8 0.0 0.22 11.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|147921165|ref|YP_685024.1| - 9e-21 74.0 0.0 1.7e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921165|ref|YP_685024.1| - 1.2e-13 51.3 0.1 2.5e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921165|ref|YP_685024.1| - 1.3e-09 38.0 0.0 2.6e-09 37.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|147921165|ref|YP_685024.1| - 2.2e-06 27.9 0.0 8.5e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|147921166|ref|YP_685023.1| - 2.6e-16 59.5 0.0 8.8e-16 57.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921166|ref|YP_685023.1| - 5.9e-10 39.4 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|147921166|ref|YP_685023.1| - 2.9e-06 27.4 0.0 7.1e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 ABC2_membrane PF01061.19 gi|147921167|ref|YP_685022.1| - 2.3e-21 75.9 24.0 2.3e-21 75.9 16.6 1.8 1 1 1 2 2 2 1 ABC-2 type transporter Wzt_C PF14524.1 gi|147921168|ref|YP_685021.1| - 2.7e-32 111.4 0.5 4.4e-32 110.7 0.4 1.3 1 0 0 1 1 1 1 Wzt C-terminal domain ABC_tran PF00005.22 gi|147921168|ref|YP_685021.1| - 8.1e-24 84.4 0.7 2.7e-23 82.7 0.1 2.1 2 1 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|147921168|ref|YP_685021.1| - 3.2e-13 50.2 3.0 1.5e-05 25.1 0.0 2.7 2 1 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|147921168|ref|YP_685021.1| - 9.9e-06 24.9 0.1 2.1e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147921168|ref|YP_685021.1| - 0.0015 18.8 3.3 0.0027 18.0 2.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|147921168|ref|YP_685021.1| - 0.0018 18.5 0.2 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Miro PF08477.8 gi|147921168|ref|YP_685021.1| - 0.0047 17.4 0.2 0.045 14.2 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein AAA_16 PF13191.1 gi|147921168|ref|YP_685021.1| - 0.006 16.5 0.0 0.0085 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|147921168|ref|YP_685021.1| - 0.0081 15.2 2.6 0.09 11.8 1.2 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|147921168|ref|YP_685021.1| - 0.0082 16.3 0.2 0.09 12.9 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|147921168|ref|YP_685021.1| - 0.0084 15.8 0.7 0.034 13.8 0.1 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|147921168|ref|YP_685021.1| - 0.0089 16.8 0.4 0.11 13.3 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|147921168|ref|YP_685021.1| - 0.011 15.8 0.1 0.034 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|147921168|ref|YP_685021.1| - 0.016 14.7 0.4 0.24 10.8 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|147921168|ref|YP_685021.1| - 0.018 14.9 0.1 0.046 13.6 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|147921168|ref|YP_685021.1| - 0.035 13.8 0.5 0.3 10.7 0.2 2.3 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|147921168|ref|YP_685021.1| - 0.042 13.0 0.1 0.078 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|147921168|ref|YP_685021.1| - 0.043 13.4 0.1 0.072 12.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.14 gi|147921168|ref|YP_685021.1| - 0.056 12.6 0.7 0.13 11.4 0.0 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|147921168|ref|YP_685021.1| - 0.064 12.8 0.1 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain FDX-ACB PF03147.9 gi|147921168|ref|YP_685021.1| - 0.081 13.1 0.0 0.28 11.3 0.0 1.9 1 0 0 1 1 1 0 Ferredoxin-fold anticodon binding domain RCC1_2 PF13540.1 gi|147921168|ref|YP_685021.1| - 0.089 12.4 0.0 7.7 6.2 0.0 2.7 2 0 0 2 2 2 0 Regulator of chromosome condensation (RCC1) repeat Methyltransf_23 PF13489.1 gi|147921169|ref|YP_685020.1| - 4.4e-13 49.2 0.0 7.5e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|147921169|ref|YP_685020.1| - 3e-11 43.0 0.0 6.7e-11 41.9 0.0 1.6 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.7 gi|147921169|ref|YP_685020.1| - 6.6e-10 39.3 0.0 1.7e-09 38.0 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147921169|ref|YP_685020.1| - 1.2e-05 24.9 0.0 2.6e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147921169|ref|YP_685020.1| - 0.00038 20.8 0.1 0.0018 18.7 0.1 2.3 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|147921169|ref|YP_685020.1| - 0.00098 19.1 0.0 0.0055 16.7 0.0 2.2 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.2 gi|147921169|ref|YP_685020.1| - 0.0018 18.8 0.1 0.0093 16.5 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|147921169|ref|YP_685020.1| - 0.0043 16.1 1.4 0.021 13.8 0.0 2.7 3 0 0 3 3 3 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|147921169|ref|YP_685020.1| - 0.011 15.7 0.0 0.042 13.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147921169|ref|YP_685020.1| - 0.02 15.2 0.0 0.043 14.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain AdoMet_MTase PF07757.8 gi|147921169|ref|YP_685020.1| - 0.1 12.6 0.5 0.38 10.8 0.1 2.1 2 0 0 2 2 2 0 Predicted AdoMet-dependent methyltransferase Glycos_transf_1 PF00534.15 gi|147921170|ref|YP_685019.1| - 3e-33 114.6 0.0 6.9e-21 74.4 0.0 2.6 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921170|ref|YP_685019.1| - 1.4e-24 86.7 0.1 4.3e-13 49.5 0.0 2.7 2 0 0 2 2 2 2 Glycosyl transferases group 1 Methyltransf_24 PF13578.1 gi|147921170|ref|YP_685019.1| - 1.4e-08 35.5 0.0 5.6e-08 33.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Glyco_transf_4 PF13439.1 gi|147921170|ref|YP_685019.1| - 0.00042 20.0 0.0 0.00086 19.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 CmcI PF04989.7 gi|147921170|ref|YP_685019.1| - 0.0037 16.6 0.0 0.0073 15.6 0.0 1.5 1 0 0 1 1 1 1 Cephalosporin hydroxylase Glyco_trans_1_2 PF13524.1 gi|147921170|ref|YP_685019.1| - 0.0097 16.1 0.0 0.053 13.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|147921171|ref|YP_685018.1| - 9.7e-36 122.7 0.0 2.8e-35 121.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147921171|ref|YP_685018.1| - 2.1e-17 63.7 0.0 4.7e-17 62.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|147921171|ref|YP_685018.1| - 8.9e-15 55.0 0.0 2.2e-14 53.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921171|ref|YP_685018.1| - 1.6e-13 50.7 1.3 6.7e-13 48.7 0.2 2.5 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|147921171|ref|YP_685018.1| - 1e-10 41.7 0.0 4.2e-07 30.1 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147921171|ref|YP_685018.1| - 6.6e-05 22.7 0.2 0.00019 21.2 0.1 1.8 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_3 PF12000.3 gi|147921171|ref|YP_685018.1| - 0.00013 21.6 0.1 0.0027 17.3 0.0 2.5 3 0 0 3 3 3 1 Gkycosyl transferase family 4 group Glyco_transf_5 PF08323.6 gi|147921171|ref|YP_685018.1| - 0.025 14.0 0.7 0.36 10.2 0.5 2.3 1 1 0 1 1 1 0 Starch synthase catalytic domain PIGA PF08288.7 gi|147921171|ref|YP_685018.1| - 0.062 13.6 0.1 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) PMT_2 PF13231.1 gi|147921172|ref|YP_685017.1| - 1.7e-16 60.5 18.7 1.7e-16 60.5 12.9 3.3 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|147921172|ref|YP_685017.1| - 2e-08 33.9 17.5 2e-08 33.9 12.1 2.3 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2723 PF11028.3 gi|147921172|ref|YP_685017.1| - 4.2e-07 29.6 8.2 4.2e-07 29.6 5.7 3.2 2 1 0 2 2 2 1 Protein of unknown function (DUF2723) BcsB PF03170.8 gi|147921172|ref|YP_685017.1| - 0.12 10.4 0.2 0.58 8.1 0.0 1.8 2 0 0 2 2 2 0 Bacterial cellulose synthase subunit PMT_2 PF13231.1 gi|147921174|ref|YP_685015.1| - 3.3e-08 33.5 19.4 3.3e-08 33.5 13.4 2.8 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Methyltransf_11 PF08241.7 gi|147921175|ref|YP_685014.1| - 1.4e-20 73.6 0.0 1.9e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147921175|ref|YP_685014.1| - 1.4e-16 60.4 0.0 1.8e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921175|ref|YP_685014.1| - 1.5e-14 53.9 0.0 1.8e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|147921175|ref|YP_685014.1| - 1.8e-10 40.4 0.0 2.5e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|147921175|ref|YP_685014.1| - 2.4e-09 37.4 0.0 4.3e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147921175|ref|YP_685014.1| - 2e-08 34.5 0.0 3.8e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921175|ref|YP_685014.1| - 2.1e-05 25.0 0.0 3.5e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147921175|ref|YP_685014.1| - 0.00063 19.7 0.0 0.0011 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147921175|ref|YP_685014.1| - 0.025 13.9 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.15 gi|147921175|ref|YP_685014.1| - 0.039 13.0 0.0 0.059 12.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|147921175|ref|YP_685014.1| - 0.1 11.2 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Glycos_transf_2 PF00535.21 gi|147921176|ref|YP_685013.1| - 3e-26 92.1 0.0 4.4e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147921176|ref|YP_685013.1| - 5.5e-11 42.7 0.0 7.9e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|147921176|ref|YP_685013.1| - 2.2e-06 26.9 0.1 3e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|147921176|ref|YP_685013.1| - 0.018 15.3 0.1 0.066 13.5 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase family 2 PCIF1_WW PF12237.3 gi|147921176|ref|YP_685013.1| - 0.045 13.0 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphorylated CTD interacting factor 1 WW domain Radical_SAM PF04055.16 gi|147921177|ref|YP_685012.1| - 8.8e-27 94.3 1.9 3.4e-26 92.3 0.8 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|147921177|ref|YP_685012.1| - 3.3e-16 59.2 0.0 1.1e-15 57.5 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain UPF0180 PF03698.8 gi|147921177|ref|YP_685012.1| - 0.066 13.0 0.1 2.3 8.1 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) UPF0104 PF03706.8 gi|147921178|ref|YP_685011.1| - 2e-39 135.6 32.1 2.5e-39 135.3 22.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Epimerase PF01370.16 gi|147921179|ref|YP_685010.1| - 1.8e-66 223.9 0.0 2.1e-66 223.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|147921179|ref|YP_685010.1| - 9.9e-29 99.9 0.0 1.4e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|147921179|ref|YP_685010.1| - 3.9e-23 81.7 0.0 5e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|147921179|ref|YP_685010.1| - 1.2e-22 80.0 0.1 7.7e-18 64.3 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|147921179|ref|YP_685010.1| - 2.8e-22 79.6 0.0 3.4e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|147921179|ref|YP_685010.1| - 3.4e-22 78.6 0.1 8.6e-20 70.8 0.1 2.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|147921179|ref|YP_685010.1| - 3.5e-07 30.2 2.6 6.1e-07 29.4 0.3 2.3 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|147921179|ref|YP_685010.1| - 2.8e-06 26.7 0.0 5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|147921179|ref|YP_685010.1| - 0.065 12.8 0.2 0.23 11.1 0.1 1.9 1 1 0 1 1 1 0 KR domain Epimerase PF01370.16 gi|147921180|ref|YP_685009.1| - 7.7e-68 228.4 0.0 9.2e-68 228.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|147921180|ref|YP_685009.1| - 1.1e-11 44.1 0.0 1.6e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|147921180|ref|YP_685009.1| - 1e-06 28.8 0.0 1.7e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|147921180|ref|YP_685009.1| - 2.4e-06 27.0 0.0 3.9e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|147921180|ref|YP_685009.1| - 0.0037 15.9 0.0 0.0049 15.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|147921180|ref|YP_685009.1| - 0.0049 16.7 0.1 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|147921180|ref|YP_685009.1| - 0.006 15.5 0.0 0.0084 15.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|147921180|ref|YP_685009.1| - 0.013 14.4 0.0 0.024 13.5 0.0 1.5 1 1 0 1 1 1 0 Male sterility protein Epimerase_Csub PF13950.1 gi|147921180|ref|YP_685009.1| - 0.029 14.2 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit TrkA_N PF02254.13 gi|147921180|ref|YP_685009.1| - 0.062 13.3 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.5 gi|147921180|ref|YP_685009.1| - 0.14 11.7 0.1 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 KR domain dTDP_sugar_isom PF00908.12 gi|147921181|ref|YP_685008.1| - 4.5e-11 42.3 0.0 5.9e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|147921181|ref|YP_685008.1| - 4.6e-08 32.6 0.0 5.2e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|147921181|ref|YP_685008.1| - 0.00024 20.5 0.1 0.0022 17.4 0.0 2.1 1 1 0 1 1 1 1 Cupin domain Epimerase PF01370.16 gi|147921182|ref|YP_685007.1| - 5.6e-68 228.8 0.0 8.1e-68 228.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|147921182|ref|YP_685007.1| - 2.5e-26 91.9 0.0 3.7e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|147921182|ref|YP_685007.1| - 1.4e-22 80.0 0.0 6.5e-22 77.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|147921182|ref|YP_685007.1| - 3.6e-19 68.7 0.0 5.7e-19 68.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|147921182|ref|YP_685007.1| - 1.6e-18 66.5 0.0 9.8e-14 50.8 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|147921182|ref|YP_685007.1| - 6.8e-07 29.4 0.0 1e-06 28.8 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|147921182|ref|YP_685007.1| - 3.8e-05 23.0 0.0 5.7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|147921182|ref|YP_685007.1| - 0.00025 21.0 0.3 0.0018 18.2 0.2 2.3 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|147921182|ref|YP_685007.1| - 0.0062 16.2 0.0 0.015 14.9 0.0 1.6 1 1 0 1 1 1 1 KR domain DUF1450 PF07293.6 gi|147921182|ref|YP_685007.1| - 0.049 13.6 0.1 0.2 11.6 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1450) Semialdhyde_dh PF01118.19 gi|147921182|ref|YP_685007.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|147921183|ref|YP_685006.1| - 4.8e-94 314.4 0.0 5.7e-94 314.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|147921183|ref|YP_685006.1| - 3.5e-19 69.1 0.6 7.3e-19 68.1 0.4 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|147921183|ref|YP_685006.1| - 2.4e-11 43.0 0.6 1e-10 41.0 0.1 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|147921183|ref|YP_685006.1| - 1.8e-06 27.1 0.1 3e-06 26.3 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|147921183|ref|YP_685006.1| - 5.7e-06 25.2 0.7 8.2e-06 24.7 0.1 1.6 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF4394 PF14339.1 gi|147921183|ref|YP_685006.1| - 0.018 14.3 0.1 0.056 12.7 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4394) NAD_binding_10 PF13460.1 gi|147921183|ref|YP_685006.1| - 0.019 14.9 0.3 0.036 14.0 0.2 1.5 1 1 0 1 1 1 0 NADH(P)-binding adh_short PF00106.20 gi|147921183|ref|YP_685006.1| - 0.033 14.1 0.8 0.047 13.6 0.1 1.6 1 1 0 1 1 1 0 short chain dehydrogenase NTP_transferase PF00483.18 gi|147921184|ref|YP_685005.1| - 2.6e-59 200.5 0.0 2.9e-59 200.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|147921184|ref|YP_685005.1| - 1.8e-10 41.1 0.0 2.1e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.21 gi|147921185|ref|YP_685004.1| - 2.1e-28 99.1 0.0 2.6e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147921185|ref|YP_685004.1| - 7e-13 48.9 0.0 1e-12 48.3 0.0 1.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|147921185|ref|YP_685004.1| - 4.7e-05 22.6 0.0 0.00012 21.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|147921185|ref|YP_685004.1| - 0.00055 20.1 0.0 0.0028 17.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|147921186|ref|YP_685003.1| - 1.6e-33 115.5 0.0 2.3e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921186|ref|YP_685003.1| - 1.3e-20 73.8 0.0 2.1e-20 73.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|147921186|ref|YP_685003.1| - 4e-20 72.5 0.1 6.9e-20 71.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|147921186|ref|YP_685003.1| - 5.4e-19 68.6 0.0 9.6e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|147921186|ref|YP_685003.1| - 3.8e-09 36.7 0.0 8.3e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147921186|ref|YP_685003.1| - 0.015 15.0 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.21 gi|147921187|ref|YP_685002.1| - 3.1e-20 72.5 0.0 4.2e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147921187|ref|YP_685002.1| - 9.3e-09 35.4 0.0 1.3e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HisG_C PF08029.6 gi|147921187|ref|YP_685002.1| - 0.065 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 HisG, C-terminal domain MCPsignal PF00015.16 gi|147921188|ref|YP_685001.1| - 3.5e-48 163.9 53.0 8.8e-45 152.8 25.0 3.0 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|147921188|ref|YP_685001.1| - 4.4e-20 71.9 0.1 3.9e-09 36.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|147921188|ref|YP_685001.1| - 2.8e-17 62.5 0.0 1.2e-07 31.4 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|147921188|ref|YP_685001.1| - 3.5e-13 49.5 0.0 2.4e-05 24.3 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|147921188|ref|YP_685001.1| - 2.5e-09 36.6 0.0 1.8e-05 24.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_10 PF13596.1 gi|147921188|ref|YP_685001.1| - 3.5e-06 27.2 3.4 7.5e-05 22.9 0.0 4.1 4 0 0 4 4 4 1 PAS domain Myosin_tail_1 PF01576.14 gi|147921188|ref|YP_685001.1| - 0.00037 18.3 7.2 0.00037 18.3 5.0 2.3 2 0 0 2 2 2 2 Myosin tail HAMP PF00672.20 gi|147921188|ref|YP_685001.1| - 0.0064 16.6 3.4 0.19 11.9 0.1 3.7 3 1 0 3 3 3 1 HAMP domain DUF948 PF06103.6 gi|147921188|ref|YP_685001.1| - 0.021 14.6 27.0 0.36 10.7 2.3 5.3 2 2 4 6 6 6 0 Bacterial protein of unknown function (DUF948) HisK_N PF09385.5 gi|147921188|ref|YP_685001.1| - 0.13 11.8 5.6 0.38 10.3 0.3 3.1 1 1 1 2 2 2 0 Histidine kinase N terminal PXA PF02194.10 gi|147921188|ref|YP_685001.1| - 0.63 9.5 11.6 0.063 12.8 1.1 2.8 1 1 0 2 2 2 0 PXA domain Laminin_II PF06009.7 gi|147921188|ref|YP_685001.1| - 8.8 6.0 40.3 0.57 9.9 2.0 5.0 3 2 2 5 5 5 0 Laminin Domain II Rubrerythrin PF02915.12 gi|147921189|ref|YP_685000.1| - 1e-13 51.8 5.7 1e-12 48.5 3.9 1.9 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|147921189|ref|YP_685000.1| - 5.8e-05 22.8 2.4 0.0006 19.5 1.6 1.9 1 1 0 1 1 1 1 Ferritin-like domain tRNA_anti-codon PF01336.20 gi|147921191|ref|YP_684998.1| - 2.8e-06 27.0 0.0 3.5e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Trep_Strep PF09605.5 gi|147921191|ref|YP_684998.1| - 0.035 13.7 0.1 0.043 13.4 0.1 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF4131 PF13567.1 gi|147921191|ref|YP_684998.1| - 0.051 12.9 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DDE_Tnp_1 PF01609.16 gi|147921192|ref|YP_684997.1| - 1.6e-11 44.1 0.1 3.3e-11 43.1 0.1 1.5 1 0 0 1 1 1 1 Transposase DDE domain Na_H_Exchanger PF00999.16 gi|147921193|ref|YP_684995.1| - 6.8e-45 153.2 57.8 8.1e-45 152.9 40.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MFS_1 PF07690.11 gi|147921195|ref|YP_684993.1| - 2.1e-34 118.8 52.5 4.3e-30 104.6 25.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|147921195|ref|YP_684993.1| - 0.00014 21.6 8.5 0.15 11.8 0.5 3.9 3 0 0 3 3 3 2 MFS_1 like family Sugar_tr PF00083.19 gi|147921195|ref|YP_684993.1| - 0.091 11.3 26.5 0.008 14.7 4.9 2.6 1 1 0 2 2 2 0 Sugar (and other) transporter MFS_1 PF07690.11 gi|147921196|ref|YP_684992.1| - 5.4e-33 114.1 38.0 9.1e-29 100.2 22.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147921196|ref|YP_684992.1| - 2.6e-13 49.1 27.0 1.3e-07 30.4 11.5 2.1 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|147921196|ref|YP_684992.1| - 6.9e-09 34.3 14.6 5.3e-06 24.8 8.5 2.1 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.2 gi|147921196|ref|YP_684992.1| - 5.5e-06 26.0 9.6 0.0011 18.7 0.9 3.4 3 0 0 3 3 3 2 MFS_1 like family MFS_1 PF07690.11 gi|147921197|ref|YP_684991.1| - 6.3e-37 127.1 40.7 8.9e-33 113.4 22.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147921197|ref|YP_684991.1| - 3.2e-12 45.5 17.9 3.2e-12 45.5 12.4 2.1 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|147921197|ref|YP_684991.1| - 0.00013 21.6 7.0 0.0009 18.9 0.3 3.3 3 0 0 3 3 3 2 MFS_1 like family MFS_3 PF05977.8 gi|147921197|ref|YP_684991.1| - 0.093 10.8 21.4 0.093 10.8 0.1 2.4 1 1 1 2 2 2 0 Transmembrane secretion effector Gemini_mov PF01708.11 gi|147921197|ref|YP_684991.1| - 0.16 11.4 1.0 0.61 9.6 0.1 2.3 2 0 0 2 2 2 0 Geminivirus putative movement protein AP_endonuc_2 PF01261.19 gi|147921198|ref|YP_684990.1| - 2.2e-30 105.5 0.0 2.8e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel SprT-like PF10263.4 gi|147921199|ref|YP_684989.1| - 1.3e-24 86.6 9.3 1.7e-22 79.7 0.4 2.0 1 1 1 2 2 2 2 SprT-like family Zn-ribbon_8 PF09723.5 gi|147921199|ref|YP_684989.1| - 0.00011 22.0 12.3 0.0067 16.3 1.6 2.4 2 0 0 2 2 2 2 Zinc ribbon domain HypA PF01155.14 gi|147921199|ref|YP_684989.1| - 0.0067 16.1 8.3 1.4 8.6 5.7 2.2 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Desulfoferrod_N PF06397.7 gi|147921199|ref|YP_684989.1| - 0.0074 15.6 6.5 0.083 12.2 0.1 2.8 3 0 0 3 3 3 2 Desulfoferrodoxin, N-terminal domain NOB1_Zn_bind PF08772.6 gi|147921199|ref|YP_684989.1| - 0.069 12.9 8.6 0.028 14.2 3.3 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.13 gi|147921199|ref|YP_684989.1| - 0.077 12.6 3.7 1.1 8.9 0.1 2.8 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CHC2 PF01807.15 gi|147921199|ref|YP_684989.1| - 0.36 10.3 2.4 0.91 9.1 0.4 2.1 2 0 0 2 2 2 0 CHC2 zinc finger C1_3 PF07649.7 gi|147921199|ref|YP_684989.1| - 1.2 9.2 6.7 7.6 6.6 0.1 3.2 3 0 0 3 3 3 0 C1-like domain zinc_ribbon_2 PF13240.1 gi|147921199|ref|YP_684989.1| - 2.1 7.9 6.2 2.7 7.5 0.0 2.7 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|147921199|ref|YP_684989.1| - 5.6 6.8 10.9 24 4.8 1.2 2.7 1 1 1 2 2 2 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|147921199|ref|YP_684989.1| - 5.8 7.4 9.0 7.9 6.9 0.2 3.0 3 0 0 3 3 2 0 Zinc-finger double domain GCC2_GCC3 PF07699.8 gi|147921199|ref|YP_684989.1| - 7.6 6.2 9.1 9.2 5.9 0.3 2.7 2 1 0 2 2 2 0 GCC2 and GCC3 OrfB_Zn_ribbon PF07282.6 gi|147921199|ref|YP_684989.1| - 9.6 5.9 8.3 5.9 6.6 1.0 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Acetyltransf_4 PF13420.1 gi|147921201|ref|YP_684987.1| - 6.4e-16 58.6 0.0 7.4e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147921201|ref|YP_684987.1| - 1.8e-09 37.8 0.0 2.1e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|147921201|ref|YP_684987.1| - 4.5e-09 36.2 0.1 9e-09 35.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|147921201|ref|YP_684987.1| - 2.6e-07 30.6 0.0 3.2e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147921201|ref|YP_684987.1| - 6.8e-06 26.1 0.0 8.5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|147921201|ref|YP_684987.1| - 3.1e-05 23.6 0.0 4.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|147921201|ref|YP_684987.1| - 3.1e-05 24.0 0.1 4.8e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CxxCxxCC PF03692.10 gi|147921202|ref|YP_684986.1| - 2e-10 40.9 4.5 3.3e-10 40.2 3.1 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Pox_vIL-18BP PF05566.7 gi|147921202|ref|YP_684986.1| - 0.0043 17.0 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 Orthopoxvirus interleukin 18 binding protein DDE_Tnp_ISL3 PF01610.12 gi|147921203|ref|YP_685155.1| - 6.6e-73 245.3 2.9 8.6e-73 244.9 2.0 1.2 1 0 0 1 1 1 1 Transposase HTH_Tnp_ISL3 PF13542.1 gi|147921203|ref|YP_685155.1| - 3.9e-12 45.1 0.0 7.4e-12 44.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 zf-ISL3 PF14690.1 gi|147921203|ref|YP_685155.1| - 1.1e-05 25.4 7.2 2.8e-05 24.0 5.0 1.8 1 0 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 GIIM PF08388.6 gi|147921203|ref|YP_685155.1| - 0.074 12.8 1.9 0.13 12.0 0.2 2.2 2 0 0 2 2 2 0 Group II intron, maturase-specific domain HATPase_c PF02518.21 gi|147921204|ref|YP_684984.1| - 5.3e-17 61.5 0.0 1.4e-16 60.1 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147921204|ref|YP_684984.1| - 1.3e-13 51.1 0.0 4.6e-13 49.4 0.0 1.9 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|147921204|ref|YP_684984.1| - 3.8e-11 42.7 0.0 7.5e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|147921204|ref|YP_684984.1| - 3.8e-05 23.6 0.0 7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|147921204|ref|YP_684984.1| - 0.0001 22.0 0.0 0.00031 20.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|147921204|ref|YP_684984.1| - 0.00079 19.4 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.1 gi|147921204|ref|YP_684984.1| - 0.0054 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|147921204|ref|YP_684984.1| - 0.052 13.2 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Flavodoxin_5 PF12724.2 gi|147921205|ref|YP_684983.1| - 1.1e-08 35.1 0.0 7.7e-07 29.2 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.2 gi|147921205|ref|YP_684983.1| - 0.0013 18.1 0.0 0.043 13.2 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|147921205|ref|YP_684983.1| - 0.0039 17.1 0.1 0.02 14.8 0.1 2.0 1 1 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|147921205|ref|YP_684983.1| - 0.0067 15.9 0.3 0.036 13.5 0.2 2.0 1 1 0 1 1 1 1 NADPH-dependent FMN reductase DUF169 PF02596.10 gi|147921206|ref|YP_684982.1| - 9.2e-20 70.9 0.0 1.1e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 EGL-1 PF11430.3 gi|147921206|ref|YP_684982.1| - 0.056 13.0 0.2 8.1 6.1 0.0 2.4 2 0 0 2 2 2 0 Programmed cell death activator EGL-1 SOUL PF04832.7 gi|147921207|ref|YP_684981.1| - 3.7e-54 182.9 0.0 2.2e-52 177.1 0.0 2.0 1 1 0 1 1 1 1 SOUL heme-binding protein GyrI-like PF06445.10 gi|147921207|ref|YP_684981.1| - 0.00071 19.6 0.0 0.001 19.1 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Antibiotic_NAT PF02522.9 gi|147921208|ref|YP_684980.1| - 2.4e-85 285.4 0.0 2.8e-85 285.1 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase GyrI-like PF06445.10 gi|147921209|ref|YP_684979.1| - 2e-14 53.9 0.0 2.2e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 GyrI-like small molecule binding domain SOUL PF04832.7 gi|147921209|ref|YP_684979.1| - 0.011 15.3 0.0 0.11 11.9 0.0 2.0 1 1 1 2 2 2 0 SOUL heme-binding protein TrkH PF02386.11 gi|147921210|ref|YP_684978.1| - 3e-57 193.8 20.4 3e-57 193.8 14.1 2.3 2 1 0 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|147921211|ref|YP_684977.1| - 1e-23 83.5 4.5 1.8e-23 82.7 3.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|147921211|ref|YP_684977.1| - 4.8e-17 61.3 3.2 1.8e-16 59.4 0.2 2.5 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|147921211|ref|YP_684977.1| - 7e-08 32.6 0.2 1e-07 32.1 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|147921211|ref|YP_684977.1| - 8e-08 31.6 0.4 9.3e-08 31.4 0.3 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase F420_oxidored PF03807.12 gi|147921211|ref|YP_684977.1| - 1.2e-06 28.8 1.0 2.8e-06 27.6 0.4 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|147921211|ref|YP_684977.1| - 3.8e-06 27.0 1.3 5.6e-06 26.4 0.9 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|147921211|ref|YP_684977.1| - 6.8e-06 26.0 2.3 1.8e-05 24.6 0.3 2.2 1 1 2 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.8 gi|147921211|ref|YP_684977.1| - 9.8e-05 21.7 0.7 0.00017 20.9 0.5 1.5 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|147921211|ref|YP_684977.1| - 0.00046 19.3 0.2 0.00079 18.6 0.1 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|147921211|ref|YP_684977.1| - 0.00084 19.0 1.1 0.0043 16.7 0.6 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|147921211|ref|YP_684977.1| - 0.00086 19.5 0.5 0.0015 18.7 0.4 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|147921211|ref|YP_684977.1| - 0.001 19.3 0.1 0.0015 18.8 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|147921211|ref|YP_684977.1| - 0.0013 18.4 0.9 0.0019 17.9 0.6 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|147921211|ref|YP_684977.1| - 0.0021 17.4 0.4 0.015 14.7 0.1 2.0 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|147921211|ref|YP_684977.1| - 0.0035 17.8 0.1 0.0062 17.0 0.1 1.5 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.9 gi|147921211|ref|YP_684977.1| - 0.014 14.8 0.8 0.028 13.8 0.5 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.20 gi|147921211|ref|YP_684977.1| - 0.024 14.5 0.3 0.042 13.7 0.2 1.5 1 1 0 1 1 1 0 short chain dehydrogenase Gp_dh_N PF00044.19 gi|147921211|ref|YP_684977.1| - 0.041 13.8 0.7 0.066 13.1 0.5 1.5 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|147921211|ref|YP_684977.1| - 0.056 12.9 1.0 6 6.4 0.0 2.5 1 1 1 2 2 2 0 Zinc-binding dehydrogenase HisKA_2 PF07568.7 gi|147921212|ref|YP_684976.1| - 4.3e-28 96.9 2.5 8.9e-28 95.9 1.7 1.6 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|147921212|ref|YP_684976.1| - 8.8e-10 38.2 0.2 3.7e-09 36.2 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|147921212|ref|YP_684976.1| - 1.1e-07 31.4 0.0 3.1e-07 30.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|147921212|ref|YP_684976.1| - 4.3e-06 26.4 0.0 7.6e-05 22.4 0.0 2.4 2 0 0 2 2 2 1 PAS fold HWE_HK PF07536.9 gi|147921212|ref|YP_684976.1| - 6.3e-06 26.5 1.6 2.3e-05 24.7 0.4 2.2 2 0 0 2 2 2 1 HWE histidine kinase PAS_4 PF08448.5 gi|147921212|ref|YP_684976.1| - 1.3e-05 25.1 0.0 0.00082 19.3 0.0 2.3 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|147921212|ref|YP_684976.1| - 1.6e-05 25.1 0.2 0.00011 22.4 0.0 2.4 2 1 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|147921212|ref|YP_684976.1| - 0.00073 19.3 0.0 0.0022 17.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|147921212|ref|YP_684976.1| - 0.02 14.8 0.3 0.17 11.9 0.0 2.3 2 1 1 3 3 3 0 PAS fold HisKA_2 PF07568.7 gi|147921215|ref|YP_684973.1| - 2.2e-29 101.0 3.6 2.2e-29 101.0 2.5 2.3 2 0 0 2 2 2 1 Histidine kinase PAS_9 PF13426.1 gi|147921215|ref|YP_684973.1| - 1.2e-08 35.1 0.0 2.8e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c PF02518.21 gi|147921215|ref|YP_684973.1| - 1.7e-08 34.1 0.0 3.9e-08 32.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147921215|ref|YP_684973.1| - 4.9e-07 29.7 0.0 8.2e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|147921215|ref|YP_684973.1| - 1.3e-05 25.5 0.8 3.3e-05 24.2 0.5 1.7 1 0 0 1 1 1 1 HWE histidine kinase PAS PF00989.19 gi|147921215|ref|YP_684973.1| - 2.8e-05 23.8 0.0 5.6e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|147921215|ref|YP_684973.1| - 0.017 14.8 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Kinesin-related PF06548.6 gi|147921215|ref|YP_684973.1| - 0.023 13.2 0.5 0.032 12.7 0.3 1.1 1 0 0 1 1 1 0 Kinesin-related DUF4131 PF13567.1 gi|147921215|ref|YP_684973.1| - 5.5 6.3 9.9 1 8.7 1.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) zf-ribbon_3 PF13248.1 gi|147921216|ref|YP_684972.1| - 0.087 12.0 0.9 0.21 10.8 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|147921216|ref|YP_684972.1| - 0.2 11.9 0.7 0.29 11.4 0.5 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar CorA PF01544.13 gi|147921217|ref|YP_684971.1| - 3.8e-73 246.0 2.5 4.3e-73 245.8 1.7 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein HisKA PF00512.20 gi|147921217|ref|YP_684971.1| - 0.37 10.8 2.6 4.5 7.3 0.1 3.0 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain DUF35 PF01796.12 gi|147921218|ref|YP_684970.1| - 1.6e-16 60.2 0.3 2.1e-16 59.8 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|147921218|ref|YP_684970.1| - 3.4e-12 45.8 2.6 5.8e-12 45.1 1.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|147921218|ref|YP_684970.1| - 0.036 13.8 0.8 0.059 13.2 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|147921218|ref|YP_684970.1| - 0.12 12.0 1.6 0.19 11.4 1.1 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FdhE PF04216.7 gi|147921218|ref|YP_684970.1| - 0.2 11.3 0.7 0.25 11.0 0.5 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Thiolase_N PF00108.18 gi|147921219|ref|YP_684969.1| - 4.1e-13 48.9 2.8 9.6e-12 44.4 1.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|147921219|ref|YP_684969.1| - 6.5e-13 48.1 1.4 2.6e-11 42.9 1.1 2.6 1 1 1 2 2 2 2 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|147921219|ref|YP_684969.1| - 2.3e-06 27.2 8.3 4.3e-06 26.4 3.2 2.8 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|147921219|ref|YP_684969.1| - 0.00047 19.9 0.2 0.054 13.3 0.0 2.8 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain SpoVAD PF07451.6 gi|147921219|ref|YP_684969.1| - 0.004 15.6 0.1 0.0076 14.7 0.1 1.4 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) ACP_syn_III PF08545.5 gi|147921219|ref|YP_684969.1| - 0.66 9.6 5.6 1.9 8.2 0.3 2.9 2 1 1 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACP_syn_III_C PF08541.5 gi|147921220|ref|YP_684968.1| - 8.3e-07 28.9 0.0 2.3e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|147921220|ref|YP_684968.1| - 5e-05 22.8 3.2 5e-05 22.8 2.2 2.4 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_N PF01154.12 gi|147921220|ref|YP_684968.1| - 0.0029 17.1 0.1 0.0044 16.5 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|147921220|ref|YP_684968.1| - 0.025 13.5 0.8 0.034 13.1 0.6 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.5 gi|147921220|ref|YP_684968.1| - 0.07 12.5 0.1 0.26 10.7 0.0 1.7 1 1 1 2 2 2 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_3 PF01381.17 gi|147921221|ref|YP_684967.1| - 5.7e-12 45.2 0.0 1.6e-11 43.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147921221|ref|YP_684967.1| - 1.3e-10 41.1 0.0 3.5e-10 39.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|147921221|ref|YP_684967.1| - 5.6e-06 26.4 0.0 1.3e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|147921221|ref|YP_684967.1| - 0.1 12.8 0.0 0.31 11.2 0.0 1.9 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_38 PF13936.1 gi|147921221|ref|YP_684967.1| - 0.12 11.9 0.0 0.37 10.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|147921222|ref|YP_684966.1| - 3.2e-38 131.1 0.2 4.2e-38 130.7 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921222|ref|YP_684966.1| - 1.7e-13 51.1 0.0 6.4e-07 29.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147921222|ref|YP_684966.1| - 1.4e-09 37.4 2.0 1.8e-08 33.8 1.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|147921222|ref|YP_684966.1| - 8.6e-07 28.8 0.3 2.5e-06 27.3 0.2 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|147921222|ref|YP_684966.1| - 4e-06 27.0 0.1 3.5e-05 23.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147921222|ref|YP_684966.1| - 1.6e-05 24.9 0.0 2.3e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|147921222|ref|YP_684966.1| - 2.9e-05 23.6 0.2 0.012 15.0 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|147921222|ref|YP_684966.1| - 3.7e-05 23.1 0.0 7.3e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|147921222|ref|YP_684966.1| - 9.5e-05 22.8 0.9 0.00034 20.9 0.6 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|147921222|ref|YP_684966.1| - 0.00015 20.4 0.8 0.16 10.5 0.0 2.7 2 1 0 2 2 2 2 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|147921222|ref|YP_684966.1| - 0.00026 20.2 0.2 0.00058 19.0 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|147921222|ref|YP_684966.1| - 0.00033 19.6 0.4 0.088 11.6 0.0 2.1 2 0 0 2 2 2 2 NB-ARC domain AAA_18 PF13238.1 gi|147921222|ref|YP_684966.1| - 0.00052 20.3 0.1 0.033 14.4 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|147921222|ref|YP_684966.1| - 0.00057 19.5 0.1 0.0023 17.6 0.0 2.0 2 1 0 2 2 2 1 Part of AAA domain AAA_15 PF13175.1 gi|147921222|ref|YP_684966.1| - 0.0014 17.8 0.0 0.048 12.7 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|147921222|ref|YP_684966.1| - 0.0035 16.2 0.1 0.025 13.4 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein G-alpha PF00503.15 gi|147921222|ref|YP_684966.1| - 0.004 15.9 0.0 0.006 15.3 0.0 1.3 1 1 0 1 1 1 1 G-protein alpha subunit AAA_14 PF13173.1 gi|147921222|ref|YP_684966.1| - 0.0043 16.9 0.0 0.095 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|147921222|ref|YP_684966.1| - 0.0045 16.7 0.1 1.1 9.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.10 gi|147921222|ref|YP_684966.1| - 0.0046 15.6 0.2 0.035 12.7 0.0 2.1 2 0 0 2 2 2 1 Adenovirus IVa2 protein TK PF00265.13 gi|147921222|ref|YP_684966.1| - 0.0054 16.3 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 1 Thymidine kinase Mg_chelatase PF01078.16 gi|147921222|ref|YP_684966.1| - 0.0066 15.6 0.2 0.16 11.1 0.0 2.2 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.1 gi|147921222|ref|YP_684966.1| - 0.0079 16.0 0.4 0.084 12.8 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|147921222|ref|YP_684966.1| - 0.0087 15.6 0.2 0.027 14.0 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|147921222|ref|YP_684966.1| - 0.0097 16.1 0.1 2.9 8.0 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|147921222|ref|YP_684966.1| - 0.011 16.5 0.0 0.025 15.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|147921222|ref|YP_684966.1| - 0.015 14.7 0.1 0.054 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|147921222|ref|YP_684966.1| - 0.017 15.0 0.1 0.043 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|147921222|ref|YP_684966.1| - 0.021 14.3 0.6 0.044 13.2 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|147921222|ref|YP_684966.1| - 0.023 14.3 1.2 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 NTPase UPF0079 PF02367.12 gi|147921222|ref|YP_684966.1| - 0.05 13.2 0.1 0.13 11.9 0.0 1.6 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|147921222|ref|YP_684966.1| - 0.059 12.0 0.0 0.068 11.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DAP3 PF10236.4 gi|147921222|ref|YP_684966.1| - 0.064 12.1 0.3 2.7 6.8 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Sigma54_activat PF00158.21 gi|147921222|ref|YP_684966.1| - 0.066 12.6 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|147921222|ref|YP_684966.1| - 0.084 12.4 0.1 0.22 11.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|147921222|ref|YP_684966.1| - 0.095 13.1 0.0 0.17 12.4 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|147921222|ref|YP_684966.1| - 0.099 12.6 0.0 0.33 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|147921222|ref|YP_684966.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|147921222|ref|YP_684966.1| - 0.14 10.6 0.0 0.65 8.3 0.0 1.9 1 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|147921222|ref|YP_684966.1| - 0.14 11.5 0.2 0.65 9.3 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_1 PF00528.17 gi|147921223|ref|YP_684965.1| - 1.1e-19 70.7 7.3 1.7e-19 70.0 5.0 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PEGA PF08308.6 gi|147921223|ref|YP_684965.1| - 3.8e-12 45.8 0.7 4.6e-05 23.1 0.1 2.5 2 0 0 2 2 2 2 PEGA domain CarboxypepD_reg PF13620.1 gi|147921223|ref|YP_684965.1| - 3.8e-10 39.6 0.8 0.00045 20.2 0.1 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921223|ref|YP_684965.1| - 4.4e-09 36.2 3.0 0.00038 20.4 0.2 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) SBP_bac_3 PF00497.15 gi|147921224|ref|YP_684964.1| - 4.6e-64 215.7 0.2 5.3e-64 215.5 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|147921224|ref|YP_684964.1| - 6.9e-06 25.8 0.0 1.2e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like MFS_1 PF07690.11 gi|147921225|ref|YP_684963.1| - 1.5e-23 83.0 37.9 1.3e-17 63.5 14.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TauE PF01925.14 gi|147921225|ref|YP_684963.1| - 2.6 7.4 32.8 0.79 9.1 8.2 3.3 1 1 1 2 2 2 0 Sulfite exporter TauE/SafE 2TM PF13239.1 gi|147921225|ref|YP_684963.1| - 8.4 6.5 0.0 8.4 6.5 0.0 4.6 5 1 1 6 6 6 0 2TM domain Rhodanese PF00581.15 gi|147921226|ref|YP_684961.1| - 1.8e-21 76.5 0.0 2.1e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Grp1_Fun34_YaaH PF01184.14 gi|147921227|ref|YP_684960.1| - 3.9e-58 196.2 23.0 4.6e-58 195.9 15.9 1.0 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family SSF PF00474.12 gi|147921228|ref|YP_684959.1| - 3.5e-85 286.0 33.3 4.3e-85 285.8 23.1 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.21 gi|147921229|ref|YP_684958.1| - 8.5e-25 87.5 1.5 1.3e-24 87.0 1.1 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF485 PF04341.7 gi|147921229|ref|YP_684958.1| - 2.7e-06 27.0 3.0 4.5e-06 26.2 2.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF485 Claudin_2 PF13903.1 gi|147921229|ref|YP_684958.1| - 0.12 12.0 1.8 0.19 11.4 1.3 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF1469 PF07332.6 gi|147921229|ref|YP_684958.1| - 0.94 9.2 6.6 2.1 8.0 4.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Band_7_1 PF13421.1 gi|147921231|ref|YP_684956.1| - 1.7e-39 135.5 0.1 2.1e-39 135.2 0.0 1.1 1 0 0 1 1 1 1 SPFH domain-Band 7 family DZR PF12773.2 gi|147921231|ref|YP_684956.1| - 8.9e-23 79.8 34.8 1.1e-12 47.6 8.4 2.3 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|147921231|ref|YP_684956.1| - 4e-22 76.7 34.1 6.1e-08 31.6 3.6 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147921231|ref|YP_684956.1| - 3.1e-19 67.8 31.2 7.2e-07 28.5 3.1 3.3 3 0 0 3 3 3 3 zinc-ribbon domain UPF0547 PF10571.4 gi|147921231|ref|YP_684956.1| - 3e-07 29.9 31.5 0.00014 21.4 3.3 3.3 3 0 0 3 3 3 3 Uncharacterised protein family UPF0547 Band_7 PF01145.20 gi|147921231|ref|YP_684956.1| - 7e-06 26.0 0.2 1.1e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family zf-DHHC PF01529.15 gi|147921231|ref|YP_684956.1| - 0.0017 17.7 14.2 0.18 11.2 1.1 3.2 1 1 2 3 3 3 3 DHHC palmitoyltransferase DNA_ligase_ZBD PF03119.11 gi|147921231|ref|YP_684956.1| - 0.005 16.5 16.4 2.8 7.7 0.4 4.7 4 0 0 4 4 4 3 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.1 gi|147921231|ref|YP_684956.1| - 0.041 13.5 17.1 0.6 9.8 0.6 3.2 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.8 gi|147921231|ref|YP_684956.1| - 1 6.9 15.6 0.75 7.3 8.0 2.1 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 zf-TRM13_CCCH PF11722.3 gi|147921231|ref|YP_684956.1| - 2 7.8 6.5 0.35 10.2 0.2 2.7 3 0 0 3 3 3 0 CCCH zinc finger in TRM13 protein DUF35_N PF12172.3 gi|147921231|ref|YP_684956.1| - 3.1 7.8 25.1 0.28 11.1 3.0 3.6 2 2 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|147921231|ref|YP_684956.1| - 4 7.2 35.6 1.6 8.4 0.6 6.1 5 1 1 6 6 6 0 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|147921231|ref|YP_684956.1| - 4.4 6.9 37.8 14 5.2 4.8 6.2 3 2 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.7 gi|147921231|ref|YP_684956.1| - 5.4 6.8 27.7 2 8.2 2.5 3.8 2 1 1 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|147921232|ref|YP_684955.1| - 2.7e-05 23.5 1.7 4.5e-05 22.7 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|147921232|ref|YP_684955.1| - 3e-05 23.0 1.2 5.1e-05 22.3 0.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|147921232|ref|YP_684955.1| - 0.024 14.1 0.5 0.043 13.3 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|147921232|ref|YP_684955.1| - 0.042 13.6 0.3 0.074 12.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|147921232|ref|YP_684955.1| - 0.077 12.9 0.7 0.67 9.9 0.0 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme IBR PF01485.16 gi|147921232|ref|YP_684955.1| - 0.098 12.5 0.7 0.14 12.0 0.5 1.2 1 0 0 1 1 1 0 IBR domain Zn_ribbon_recom PF13408.1 gi|147921232|ref|YP_684955.1| - 0.14 12.4 1.0 3.8 7.8 0.1 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|147921232|ref|YP_684955.1| - 0.21 11.1 3.4 0.58 9.6 2.3 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Mu-like_Com PF10122.4 gi|147921232|ref|YP_684955.1| - 0.28 10.2 1.7 7.7 5.6 0.3 2.2 2 0 0 2 2 2 0 Mu-like prophage protein Com Tetraspannin PF00335.15 gi|147921232|ref|YP_684955.1| - 0.53 9.5 4.1 0.69 9.1 2.8 1.2 1 0 0 1 1 1 0 Tetraspanin family zinc_ribbon_5 PF13719.1 gi|147921232|ref|YP_684955.1| - 0.56 9.8 5.7 46 3.7 4.0 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|147921232|ref|YP_684955.1| - 0.85 9.3 5.8 63 3.3 4.0 2.3 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|147921233|ref|YP_684954.1| - 0.0049 16.1 1.6 0.011 15.0 1.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding ClpB_D2-small PF10431.4 gi|147921234|ref|YP_684953.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 C-terminal, D2-small domain, of ClpB protein PBP PF01161.15 gi|147921235|ref|YP_684952.1| - 3.7e-38 130.6 0.0 4.3e-38 130.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Cupin_2 PF07883.6 gi|147921236|ref|YP_684951.1| - 6.5e-09 35.1 0.0 8.7e-09 34.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|147921236|ref|YP_684951.1| - 5.9e-06 26.0 0.0 7.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|147921236|ref|YP_684951.1| - 0.00046 19.5 0.0 0.0006 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|147921236|ref|YP_684951.1| - 0.0075 15.8 0.0 0.0086 15.6 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ MannoseP_isomer PF01050.13 gi|147921236|ref|YP_684951.1| - 0.04 13.5 0.0 0.041 13.4 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Pirin_C PF05726.8 gi|147921236|ref|YP_684951.1| - 0.061 13.3 0.0 0.094 12.7 0.0 1.3 1 1 0 1 1 1 0 Pirin C-terminal cupin domain Cupin_1 PF00190.17 gi|147921236|ref|YP_684951.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 Cupin PIG-F PF06699.6 gi|147921237|ref|YP_684950.1| - 0.00011 22.2 1.6 0.00012 22.0 1.1 1.0 1 0 0 1 1 1 1 GPI biosynthesis protein family Pig-F DUF2178 PF09946.4 gi|147921237|ref|YP_684950.1| - 0.0022 17.7 0.4 0.0027 17.4 0.3 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2178) SLAC1 PF03595.12 gi|147921237|ref|YP_684950.1| - 0.04 12.5 2.1 0.047 12.3 1.5 1.0 1 0 0 1 1 1 0 Voltage-dependent anion channel DUF1109 PF06532.6 gi|147921237|ref|YP_684950.1| - 0.052 12.9 1.4 0.062 12.7 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1109) DUF3796 PF12676.2 gi|147921237|ref|YP_684950.1| - 0.053 13.7 0.2 0.13 12.5 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3796) DUF2231 PF09990.4 gi|147921237|ref|YP_684950.1| - 0.054 13.8 1.6 0.39 11.0 1.1 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2231) GPI2 PF06432.6 gi|147921237|ref|YP_684950.1| - 0.063 12.6 2.0 0.071 12.4 1.4 1.0 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase EphA2_TM PF14575.1 gi|147921237|ref|YP_684950.1| - 0.16 12.3 0.2 0.16 12.3 0.1 1.8 1 1 1 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain P12 PF12669.2 gi|147921237|ref|YP_684950.1| - 0.16 12.1 1.4 0.29 11.3 0.0 1.9 2 0 0 2 2 2 0 Virus attachment protein p12 family PsbN PF02468.10 gi|147921237|ref|YP_684950.1| - 1.2 8.8 7.9 0.2 11.2 1.6 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) DUF4006 PF13179.1 gi|147921237|ref|YP_684950.1| - 2.4 7.7 5.4 2 8.0 0.2 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF4006) HTH_3 PF01381.17 gi|147921238|ref|YP_684949.1| - 4.4e-17 61.6 0.0 4.9e-17 61.5 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|147921238|ref|YP_684949.1| - 5.9e-15 55.0 0.0 6.9e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|147921238|ref|YP_684949.1| - 2.8e-12 46.6 0.0 3.2e-12 46.4 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|147921238|ref|YP_684949.1| - 6.7e-09 35.8 0.0 7.5e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.1 gi|147921238|ref|YP_684949.1| - 1e-05 25.0 0.2 1.4e-05 24.6 0.1 1.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|147921238|ref|YP_684949.1| - 9e-05 22.0 0.1 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|147921238|ref|YP_684949.1| - 0.0006 19.0 0.1 0.0011 18.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|147921238|ref|YP_684949.1| - 0.0015 18.0 0.1 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|147921238|ref|YP_684949.1| - 0.0025 17.5 0.1 0.0045 16.7 0.0 1.5 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|147921238|ref|YP_684949.1| - 0.0033 17.0 0.0 0.006 16.1 0.0 1.4 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.2 gi|147921238|ref|YP_684949.1| - 0.0041 16.7 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|147921238|ref|YP_684949.1| - 0.0091 15.3 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|147921238|ref|YP_684949.1| - 0.011 15.4 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|147921238|ref|YP_684949.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|147921238|ref|YP_684949.1| - 0.016 14.9 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 MarR family CENP-B_N PF04218.8 gi|147921238|ref|YP_684949.1| - 0.032 13.6 0.3 0.059 12.7 0.0 1.5 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain Sigma70_r4_2 PF08281.7 gi|147921238|ref|YP_684949.1| - 0.033 13.6 0.0 0.39 10.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF134 PF02001.11 gi|147921238|ref|YP_684949.1| - 0.044 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_Tnp_4 PF13613.1 gi|147921238|ref|YP_684949.1| - 0.049 13.1 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_28 PF13518.1 gi|147921238|ref|YP_684949.1| - 0.05 13.6 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1323 PF07037.6 gi|147921238|ref|YP_684949.1| - 0.057 13.6 0.0 0.076 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) GntR PF00392.16 gi|147921238|ref|YP_684949.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_7 PF02796.10 gi|147921238|ref|YP_684949.1| - 0.074 12.9 0.1 0.14 12.0 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_DeoR PF08220.7 gi|147921238|ref|YP_684949.1| - 0.11 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|147921238|ref|YP_684949.1| - 0.13 12.0 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase SDH_sah PF01972.11 gi|147921240|ref|YP_684947.1| - 9.5e-106 352.7 0.4 1.1e-105 352.4 0.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|147921240|ref|YP_684947.1| - 3.7e-06 26.7 0.0 1.6e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|147921240|ref|YP_684947.1| - 0.00069 19.4 0.1 0.0019 17.9 0.0 1.7 2 0 0 2 2 2 1 Peptidase family S49 HATPase_c PF02518.21 gi|147921241|ref|YP_684946.1| - 6.3e-18 64.5 0.0 1.4e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|147921241|ref|YP_684946.1| - 2.2e-10 40.4 0.0 1.2e-08 34.9 0.0 2.4 1 1 1 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|147921241|ref|YP_684946.1| - 0.00078 19.2 0.0 0.0022 17.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147921241|ref|YP_684946.1| - 0.06 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYVE PF01363.16 gi|147921242|ref|YP_684944.1| - 0.003 17.4 0.9 0.0055 16.5 0.6 1.4 1 0 0 1 1 1 1 FYVE zinc finger NMD3 PF04981.8 gi|147921242|ref|YP_684944.1| - 0.0083 15.2 1.8 0.0085 15.2 1.3 1.1 1 0 0 1 1 1 1 NMD3 family TF_Zn_Ribbon PF08271.7 gi|147921242|ref|YP_684944.1| - 0.032 13.5 0.7 0.047 13.0 0.5 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding DUF4206 PF13901.1 gi|147921242|ref|YP_684944.1| - 0.18 11.3 1.9 0.18 11.3 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) DUF326 PF03860.11 gi|147921242|ref|YP_684944.1| - 0.37 10.6 3.1 1.7 8.5 0.1 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) DUF3039 PF11238.3 gi|147921242|ref|YP_684944.1| - 0.41 10.1 2.1 0.51 9.8 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3039) KaiC PF06745.8 gi|147921243|ref|YP_684943.1| - 2.8e-35 121.4 0.2 4.2e-35 120.9 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|147921243|ref|YP_684943.1| - 1.7e-10 40.5 0.0 2.8e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|147921243|ref|YP_684943.1| - 2.3e-05 24.3 0.0 6.2e-05 22.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|147921243|ref|YP_684943.1| - 5.6e-05 22.3 0.0 0.12 11.4 0.0 2.2 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|147921243|ref|YP_684943.1| - 0.00065 19.1 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein MEDS PF14417.1 gi|147921243|ref|YP_684943.1| - 0.0014 17.7 0.1 0.0029 16.6 0.0 1.6 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_22 PF13401.1 gi|147921243|ref|YP_684943.1| - 0.0028 17.7 0.0 0.0069 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|147921243|ref|YP_684943.1| - 0.0032 16.1 0.1 0.0069 15.0 0.0 1.5 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.11 gi|147921243|ref|YP_684943.1| - 0.0084 15.3 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_30 PF13604.1 gi|147921243|ref|YP_684943.1| - 0.0088 15.6 0.0 0.023 14.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|147921243|ref|YP_684943.1| - 0.0089 14.9 0.2 0.014 14.2 0.1 1.3 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.10 gi|147921243|ref|YP_684943.1| - 0.0098 14.8 0.0 0.023 13.6 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_19 PF13245.1 gi|147921243|ref|YP_684943.1| - 0.013 15.2 0.0 0.037 13.7 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain DUF258 PF03193.11 gi|147921243|ref|YP_684943.1| - 0.015 14.4 0.0 1.8 7.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Thymidylate_kin PF02223.12 gi|147921243|ref|YP_684943.1| - 0.019 14.3 0.0 0.062 12.6 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase DUF2075 PF09848.4 gi|147921243|ref|YP_684943.1| - 0.02 13.8 0.0 0.034 13.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF2288 PF10052.4 gi|147921243|ref|YP_684943.1| - 0.022 14.4 0.1 0.48 10.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2288) Arch_ATPase PF01637.13 gi|147921243|ref|YP_684943.1| - 0.034 13.8 0.1 0.078 12.6 0.0 1.6 2 0 0 2 2 1 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|147921243|ref|YP_684943.1| - 0.048 13.7 0.0 0.64 10.0 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|147921243|ref|YP_684943.1| - 0.048 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|147921243|ref|YP_684943.1| - 0.051 13.8 0.1 0.11 12.7 0.0 1.8 2 1 0 2 2 1 0 ABC transporter RecA PF00154.16 gi|147921243|ref|YP_684943.1| - 0.052 12.5 0.0 0.083 11.9 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA PF00004.24 gi|147921243|ref|YP_684943.1| - 0.055 13.6 0.1 0.16 12.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.4 gi|147921243|ref|YP_684943.1| - 0.065 12.7 0.5 5 6.6 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Zot PF05707.7 gi|147921243|ref|YP_684943.1| - 0.065 12.6 0.0 0.36 10.2 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ATP-synt_ab PF00006.20 gi|147921243|ref|YP_684943.1| - 0.072 12.5 0.1 0.21 11.0 0.1 1.9 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|147921243|ref|YP_684943.1| - 0.083 12.7 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.4 gi|147921243|ref|YP_684943.1| - 0.11 11.4 0.1 1.4 7.8 0.0 2.4 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 AAA_18 PF13238.1 gi|147921243|ref|YP_684943.1| - 0.12 12.7 0.3 0.46 10.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|147921243|ref|YP_684943.1| - 0.12 12.3 0.1 0.18 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|147921243|ref|YP_684943.1| - 0.17 11.3 0.8 0.89 8.9 0.3 2.2 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Robl_LC7 PF03259.12 gi|147921244|ref|YP_684942.1| - 0.079 12.5 0.2 0.31 10.6 0.1 2.0 1 1 0 1 1 1 0 Roadblock/LC7 domain UPF0184 PF03670.8 gi|147921244|ref|YP_684942.1| - 0.26 11.5 1.9 0.58 10.3 0.2 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0184) KaiC PF06745.8 gi|147921245|ref|YP_684941.1| - 1e-62 211.2 0.5 1.1e-62 211.0 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|147921245|ref|YP_684941.1| - 5.2e-09 35.7 0.0 6.8e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|147921245|ref|YP_684941.1| - 3.2e-05 23.4 0.2 0.0011 18.4 0.0 2.1 1 1 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|147921245|ref|YP_684941.1| - 6.1e-05 22.0 0.1 0.00042 19.2 0.0 2.0 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Rad51 PF08423.6 gi|147921245|ref|YP_684941.1| - 8.1e-05 21.6 0.0 0.0001 21.2 0.0 1.2 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|147921245|ref|YP_684941.1| - 0.0001 21.5 0.1 0.00039 19.5 0.0 1.8 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_14 PF13173.1 gi|147921245|ref|YP_684941.1| - 0.00011 22.1 0.1 0.00037 20.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|147921245|ref|YP_684941.1| - 0.00066 18.7 0.0 0.00098 18.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) GvpD PF07088.6 gi|147921245|ref|YP_684941.1| - 0.0008 17.8 1.0 0.0069 14.7 0.7 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein Arch_ATPase PF01637.13 gi|147921245|ref|YP_684941.1| - 0.0012 18.5 0.1 0.0018 18.0 0.1 1.3 1 1 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|147921245|ref|YP_684941.1| - 0.0059 16.0 0.0 0.0071 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain PAXNEB PF05625.6 gi|147921245|ref|YP_684941.1| - 0.0061 15.4 1.4 0.0098 14.7 0.4 1.7 1 1 1 2 2 2 1 PAXNEB protein AAA_19 PF13245.1 gi|147921245|ref|YP_684941.1| - 0.0078 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|147921245|ref|YP_684941.1| - 0.012 15.6 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain T2SE PF00437.15 gi|147921245|ref|YP_684941.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|147921245|ref|YP_684941.1| - 0.025 14.7 0.4 0.059 13.5 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|147921245|ref|YP_684941.1| - 0.032 15.0 0.7 0.082 13.7 0.5 1.9 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|147921245|ref|YP_684941.1| - 0.049 12.8 0.2 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.1 gi|147921245|ref|YP_684941.1| - 0.052 13.1 0.6 0.16 11.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|147921245|ref|YP_684941.1| - 0.053 13.4 0.0 0.098 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|147921245|ref|YP_684941.1| - 0.056 12.0 0.1 0.091 11.3 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATP-synt_ab PF00006.20 gi|147921245|ref|YP_684941.1| - 0.058 12.8 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zot PF05707.7 gi|147921245|ref|YP_684941.1| - 0.071 12.5 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_18 PF13238.1 gi|147921245|ref|YP_684941.1| - 0.088 13.1 1.2 0.18 12.0 0.8 1.7 1 1 0 1 1 1 0 AAA domain DUF2084 PF09857.4 gi|147921245|ref|YP_684941.1| - 0.097 12.3 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2084) Ras PF00071.17 gi|147921245|ref|YP_684941.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Ras family ABC_tran PF00005.22 gi|147921245|ref|YP_684941.1| - 0.14 12.4 0.4 0.19 12.0 0.3 1.5 1 1 0 1 1 1 0 ABC transporter CobU PF02283.11 gi|147921245|ref|YP_684941.1| - 0.14 11.5 0.1 0.56 9.6 0.0 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_29 PF13555.1 gi|147921245|ref|YP_684941.1| - 0.15 11.5 0.2 0.29 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain KaiC PF06745.8 gi|147921246|ref|YP_684940.1| - 3.7e-14 52.4 0.1 1e-06 28.0 0.0 2.0 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|147921246|ref|YP_684940.1| - 1.5e-06 27.7 0.0 3.8e-06 26.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|147921246|ref|YP_684940.1| - 0.0054 15.6 0.3 0.1 11.4 0.0 2.1 2 0 0 2 2 2 1 PAXNEB protein Elong_Iki1 PF10483.4 gi|147921246|ref|YP_684940.1| - 0.042 13.2 0.1 0.063 12.6 0.1 1.3 1 0 0 1 1 1 0 Elongator subunit Iki1 T2SE PF00437.15 gi|147921247|ref|YP_684939.1| - 1.7e-49 168.2 0.1 2.5e-49 167.6 0.1 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|147921247|ref|YP_684939.1| - 0.032 13.7 0.0 0.1 12.0 0.0 1.8 2 1 0 2 2 2 0 DEAD/DEAH box helicase T2SF PF00482.18 gi|147921248|ref|YP_684938.1| - 1.3e-26 92.9 16.6 1.7e-15 56.9 1.0 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|147921249|ref|YP_684937.1| - 2.3e-08 34.6 7.7 4.2e-08 33.8 5.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) M11L PF11099.3 gi|147921249|ref|YP_684937.1| - 0.15 11.8 1.8 0.23 11.1 1.3 1.4 1 0 0 1 1 1 0 Apoptosis regulator M11L like AJAP1_PANP_C PF15298.1 gi|147921249|ref|YP_684937.1| - 0.57 10.0 3.0 5.2 6.9 1.0 2.0 2 0 0 2 2 2 0 AJAP1/PANP C-terminus TMEM154 PF15102.1 gi|147921249|ref|YP_684937.1| - 1.2 8.8 4.1 0.84 9.3 1.8 1.6 1 1 1 2 2 2 0 TMEM154 protein family PKD PF00801.15 gi|147921250|ref|YP_684936.1| - 4.2e-15 55.2 11.9 6.9e-13 48.1 3.9 3.0 2 0 0 2 2 2 2 PKD domain DUF1628 PF07790.6 gi|147921250|ref|YP_684936.1| - 0.0013 19.4 4.0 0.0026 18.4 1.3 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF1628) DUF2149 PF09919.4 gi|147921250|ref|YP_684936.1| - 0.039 14.0 1.1 0.14 12.2 0.6 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2149) Peptidase_M29 PF02073.10 gi|147921251|ref|YP_684935.1| - 2.1e-26 92.6 2.8 6e-23 81.2 0.4 2.8 2 1 0 2 2 2 2 Thermophilic metalloprotease (M29) KaiC PF06745.8 gi|147921252|ref|YP_684934.1| - 2.4e-38 131.5 0.0 2.1e-36 125.1 0.0 2.9 3 0 0 3 3 3 1 KaiC AAA_25 PF13481.1 gi|147921252|ref|YP_684934.1| - 4.1e-10 39.3 0.0 1e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|147921252|ref|YP_684934.1| - 1.1e-05 25.0 0.2 5.3e-05 22.8 0.1 2.1 2 0 0 2 2 2 1 Part of AAA domain PAXNEB PF05625.6 gi|147921252|ref|YP_684934.1| - 3.9e-05 22.6 2.3 0.016 14.0 0.9 2.1 2 0 0 2 2 2 2 PAXNEB protein RecA PF00154.16 gi|147921252|ref|YP_684934.1| - 5.4e-05 22.4 0.0 0.00011 21.4 0.0 1.5 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.12 gi|147921252|ref|YP_684934.1| - 9.2e-05 21.9 0.0 0.00053 19.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|147921252|ref|YP_684934.1| - 0.0002 20.3 0.0 0.0025 16.7 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_16 PF13191.1 gi|147921252|ref|YP_684934.1| - 0.0033 17.4 0.1 0.02 14.8 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain DUF2075 PF09848.4 gi|147921252|ref|YP_684934.1| - 0.0036 16.3 0.0 0.0044 16.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|147921252|ref|YP_684934.1| - 0.007 16.5 0.0 0.026 14.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|147921252|ref|YP_684934.1| - 0.017 14.7 0.7 0.32 10.5 0.5 2.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|147921252|ref|YP_684934.1| - 0.017 14.5 0.0 0.094 12.1 0.0 2.1 2 1 0 3 3 3 0 AAA-like domain AAA PF00004.24 gi|147921252|ref|YP_684934.1| - 0.027 14.6 0.1 0.055 13.6 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|147921252|ref|YP_684934.1| - 0.039 13.5 0.2 0.12 12.0 0.0 1.8 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|147921252|ref|YP_684934.1| - 0.047 13.5 0.0 0.54 10.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain SecA_DEAD PF07517.9 gi|147921252|ref|YP_684934.1| - 0.051 12.8 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain PhoH PF02562.11 gi|147921252|ref|YP_684934.1| - 0.058 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein ATP-synt_ab PF00006.20 gi|147921252|ref|YP_684934.1| - 0.086 12.3 0.0 0.086 12.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.1 gi|147921252|ref|YP_684934.1| - 0.097 12.2 0.0 0.81 9.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|147921252|ref|YP_684934.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|147921252|ref|YP_684934.1| - 0.12 11.4 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.9 gi|147921252|ref|YP_684934.1| - 0.12 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|147921252|ref|YP_684934.1| - 0.14 11.8 0.0 0.82 9.3 0.0 2.0 2 0 0 2 2 2 0 NACHT domain ResIII PF04851.10 gi|147921252|ref|YP_684934.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit HTH_24 PF13412.1 gi|147921253|ref|YP_684933.1| - 1.9e-13 49.5 0.7 1.9e-13 49.5 0.5 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|147921253|ref|YP_684933.1| - 2e-11 43.2 1.3 4.4e-11 42.1 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|147921253|ref|YP_684933.1| - 7.4e-10 38.3 0.1 1.5e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|147921253|ref|YP_684933.1| - 6.1e-06 25.9 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.6 gi|147921253|ref|YP_684933.1| - 7.2e-05 22.4 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.1 gi|147921253|ref|YP_684933.1| - 0.0006 19.3 0.1 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|147921253|ref|YP_684933.1| - 0.001 18.7 0.2 0.0026 17.4 0.0 1.8 2 1 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|147921253|ref|YP_684933.1| - 0.0031 17.0 0.1 0.0059 16.1 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|147921253|ref|YP_684933.1| - 0.0055 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|147921253|ref|YP_684933.1| - 0.014 15.0 0.2 0.024 14.3 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_12 PF08461.5 gi|147921253|ref|YP_684933.1| - 0.028 14.1 2.4 0.2 11.4 0.2 2.6 3 1 0 3 3 2 0 Ribonuclease R winged-helix domain Ribosomal_S6 PF01250.12 gi|147921253|ref|YP_684933.1| - 0.032 14.0 0.1 0.085 12.7 0.1 1.8 1 1 0 1 1 1 0 Ribosomal protein S6 HTH_5 PF01022.15 gi|147921253|ref|YP_684933.1| - 0.032 13.8 0.0 0.072 12.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Tn7_Tnp_TnsA_C PF08721.6 gi|147921253|ref|YP_684933.1| - 0.049 13.6 0.1 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 TnsA endonuclease C terminal MarR_2 PF12802.2 gi|147921253|ref|YP_684933.1| - 0.05 13.2 0.0 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|147921253|ref|YP_684933.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|147921253|ref|YP_684933.1| - 0.079 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|147921253|ref|YP_684933.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Imm17 PF15591.1 gi|147921253|ref|YP_684933.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 Immunity protein 17 DUF2250 PF10007.4 gi|147921253|ref|YP_684933.1| - 0.13 12.1 0.5 0.25 11.2 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Matrilin_ccoil PF10393.4 gi|147921253|ref|YP_684933.1| - 0.32 10.4 0.1 0.32 10.4 0.1 2.4 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin AsnC_trans_reg PF01037.16 gi|147921254|ref|YP_684932.1| - 2.7e-12 46.1 0.1 3.9e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|147921254|ref|YP_684932.1| - 3.8e-12 45.5 0.4 1e-11 44.1 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|147921254|ref|YP_684932.1| - 5.5e-08 32.0 0.1 1.1e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|147921254|ref|YP_684932.1| - 2.3e-06 27.1 0.1 7.2e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.1 gi|147921254|ref|YP_684932.1| - 4.7e-05 22.8 0.0 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|147921254|ref|YP_684932.1| - 0.00047 19.7 0.0 0.00078 19.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|147921254|ref|YP_684932.1| - 0.0012 18.7 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|147921254|ref|YP_684932.1| - 0.0015 18.0 0.1 0.0038 16.8 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|147921254|ref|YP_684932.1| - 0.0021 17.7 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|147921254|ref|YP_684932.1| - 0.0055 16.1 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|147921254|ref|YP_684932.1| - 0.0086 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|147921254|ref|YP_684932.1| - 0.0087 15.8 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.8 gi|147921254|ref|YP_684932.1| - 0.024 14.8 0.1 1.5 9.1 0.0 2.3 1 1 0 2 2 2 0 Mga helix-turn-helix domain HTH_27 PF13463.1 gi|147921254|ref|YP_684932.1| - 0.027 14.8 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|147921254|ref|YP_684932.1| - 0.04 13.0 0.0 0.081 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|147921254|ref|YP_684932.1| - 0.049 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|147921254|ref|YP_684932.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain ACT_4 PF13291.1 gi|147921254|ref|YP_684932.1| - 0.084 13.2 0.2 0.37 11.1 0.1 2.0 1 1 0 1 1 1 0 ACT domain HTH_10 PF04967.7 gi|147921254|ref|YP_684932.1| - 0.12 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|147921255|ref|YP_684931.1| - 5.7e-14 51.3 0.1 1.1e-13 50.5 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|147921255|ref|YP_684931.1| - 5.2e-12 44.9 0.3 9.3e-12 44.1 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|147921255|ref|YP_684931.1| - 8.6e-12 44.5 0.0 1.7e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|147921255|ref|YP_684931.1| - 4.2e-06 26.3 0.1 1.1e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|147921255|ref|YP_684931.1| - 8.6e-06 24.8 0.2 2.6e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.1 gi|147921255|ref|YP_684931.1| - 2.9e-05 23.5 0.0 5.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|147921255|ref|YP_684931.1| - 4.1e-05 23.3 0.0 7.5e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|147921255|ref|YP_684931.1| - 9.9e-05 21.9 0.0 0.00025 20.6 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_23 PF13384.1 gi|147921255|ref|YP_684931.1| - 0.00011 21.6 0.1 0.00028 20.4 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_5 PF01022.15 gi|147921255|ref|YP_684931.1| - 0.00015 21.3 0.2 0.00027 20.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|147921255|ref|YP_684931.1| - 0.00022 20.7 0.0 0.00043 19.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|147921255|ref|YP_684931.1| - 0.00028 20.3 0.1 0.0006 19.2 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|147921255|ref|YP_684931.1| - 0.00029 20.5 0.0 0.00056 19.6 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|147921255|ref|YP_684931.1| - 0.00035 20.5 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.8 gi|147921255|ref|YP_684931.1| - 0.00039 20.6 0.3 0.007 16.6 0.0 2.2 2 0 0 2 2 2 1 Mga helix-turn-helix domain Fe_dep_repress PF01325.14 gi|147921255|ref|YP_684931.1| - 0.00042 20.1 0.0 0.00083 19.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.7 gi|147921255|ref|YP_684931.1| - 0.00069 19.1 0.1 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.14 gi|147921255|ref|YP_684931.1| - 0.00096 18.8 0.0 0.0027 17.3 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|147921255|ref|YP_684931.1| - 0.0022 17.7 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|147921255|ref|YP_684931.1| - 0.003 17.2 0.1 0.0052 16.4 0.1 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|147921255|ref|YP_684931.1| - 0.0032 16.7 0.0 0.0071 15.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|147921255|ref|YP_684931.1| - 0.0033 16.8 0.1 0.0064 15.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 B-block_TFIIIC PF04182.7 gi|147921255|ref|YP_684931.1| - 0.0073 16.1 0.0 0.011 15.4 0.0 1.6 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_30 PF13556.1 gi|147921255|ref|YP_684931.1| - 0.0074 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain LacI PF00356.16 gi|147921255|ref|YP_684931.1| - 0.0082 15.7 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_27 PF13463.1 gi|147921255|ref|YP_684931.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|147921255|ref|YP_684931.1| - 0.029 14.1 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family SpoIIID PF12116.3 gi|147921255|ref|YP_684931.1| - 0.029 14.2 0.0 0.082 12.8 0.0 1.8 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_Tnp_4 PF13613.1 gi|147921255|ref|YP_684931.1| - 0.036 13.6 0.0 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease TFIIE_alpha PF02002.12 gi|147921255|ref|YP_684931.1| - 0.038 13.4 0.1 0.087 12.3 0.1 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit ACT_4 PF13291.1 gi|147921255|ref|YP_684931.1| - 0.047 14.0 0.7 0.3 11.4 0.0 2.3 2 1 0 2 2 2 0 ACT domain Rrf2 PF02082.15 gi|147921255|ref|YP_684931.1| - 0.065 13.3 0.1 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TetR_N PF00440.18 gi|147921255|ref|YP_684931.1| - 0.069 12.8 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_IS630 PF01710.11 gi|147921255|ref|YP_684931.1| - 0.07 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Transposase HTH_AraC PF00165.18 gi|147921255|ref|YP_684931.1| - 0.085 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_26 PF13443.1 gi|147921255|ref|YP_684931.1| - 0.087 13.0 0.1 0.41 10.8 0.0 2.1 2 1 1 3 3 3 0 Cro/C1-type HTH DNA-binding domain HTH_6 PF01418.12 gi|147921255|ref|YP_684931.1| - 0.091 12.5 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_36 PF13730.1 gi|147921255|ref|YP_684931.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|147921255|ref|YP_684931.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family UPF0122 PF04297.9 gi|147921255|ref|YP_684931.1| - 0.13 12.2 0.4 0.35 10.9 0.1 1.8 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like LZ_Tnp_IS481 PF13011.1 gi|147921255|ref|YP_684931.1| - 0.14 12.5 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RepL PF05732.6 gi|147921255|ref|YP_684931.1| - 0.15 11.2 0.6 0.48 9.6 0.0 1.9 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) PKD PF00801.15 gi|147921256|ref|YP_684930.1| - 8.5e-20 70.2 22.8 1.4e-11 43.9 1.5 4.1 4 1 0 4 4 4 2 PKD domain CarboxypepD_reg PF13620.1 gi|147921256|ref|YP_684930.1| - 3e-12 46.4 0.1 3e-12 46.4 0.1 5.1 5 2 2 7 7 7 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921256|ref|YP_684930.1| - 3.4e-11 43.0 0.2 6.6e-10 38.9 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Y_Y_Y PF07495.8 gi|147921256|ref|YP_684930.1| - 8.4e-05 22.2 2.1 0.76 9.5 0.0 3.5 3 0 0 3 3 3 2 Y_Y_Y domain Cna_B PF05738.8 gi|147921256|ref|YP_684930.1| - 0.00022 20.9 6.5 0.14 11.9 0.0 4.2 4 0 0 4 4 4 2 Cna protein B-type domain PEGA PF08308.6 gi|147921256|ref|YP_684930.1| - 0.032 14.0 0.0 0.5 10.2 0.0 2.7 2 0 0 2 2 2 0 PEGA domain DUF2012 PF09430.5 gi|147921256|ref|YP_684930.1| - 0.034 13.9 0.0 0.072 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) Big_3 PF07523.7 gi|147921256|ref|YP_684930.1| - 0.25 11.4 0.1 0.25 11.4 0.1 4.0 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 3) MGC-24 PF05283.6 gi|147921256|ref|YP_684930.1| - 8.2 6.1 10.9 0.15 11.7 2.3 2.0 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24) Lactamase_B PF00753.22 gi|147921257|ref|YP_684929.1| - 5.3e-33 114.3 1.6 6.1e-33 114.1 1.1 1.0 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147921257|ref|YP_684929.1| - 2.4e-06 27.2 0.0 2.9e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|147921257|ref|YP_684929.1| - 0.0015 18.2 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RE_ApaLI PF09499.5 gi|147921257|ref|YP_684929.1| - 0.15 11.4 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 ApaLI-like restriction endonuclease ThiC PF01964.13 gi|147921258|ref|YP_684928.1| - 1.2e-182 607.1 0.1 1.4e-182 606.9 0.1 1.0 1 0 0 1 1 1 1 ThiC family CbiX PF01903.12 gi|147921259|ref|YP_684927.1| - 6.6e-20 71.1 0.0 7.6e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|147921259|ref|YP_684927.1| - 0.008 15.3 0.0 0.0098 15.0 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) DUF2976 PF11190.3 gi|147921260|ref|YP_684926.1| - 1.3 8.5 9.5 0.29 10.6 0.6 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2976) DUF1863 PF08937.6 gi|147921261|ref|YP_684925.1| - 0.13 12.3 0.1 0.18 11.8 0.1 1.2 1 0 0 1 1 1 0 MTH538 TIR-like domain (DUF1863) MC1 PF05854.6 gi|147921262|ref|YP_684924.1| - 4.2e-24 84.3 0.5 6.7e-24 83.6 0.4 1.4 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF4412 PF14371.1 gi|147921262|ref|YP_684924.1| - 0.034 14.6 0.1 0.047 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4412) Methyltransf_25 PF13649.1 gi|147921263|ref|YP_001218861.1| - 7.5e-09 35.8 0.0 1.3e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147921263|ref|YP_001218861.1| - 0.00031 21.1 0.0 0.00072 19.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921263|ref|YP_001218861.1| - 0.0011 18.6 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921263|ref|YP_001218861.1| - 0.0067 16.9 0.0 0.11 13.0 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain GlgS PF08971.6 gi|147921263|ref|YP_001218861.1| - 0.026 14.4 0.1 0.085 12.7 0.0 1.8 2 0 0 2 2 2 0 Glycogen synthesis protein MTS PF05175.9 gi|147921263|ref|YP_001218861.1| - 0.058 12.7 0.0 0.27 10.6 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase small domain RrnaAD PF00398.15 gi|147921263|ref|YP_001218861.1| - 0.079 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|147921263|ref|YP_001218861.1| - 0.13 10.9 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase QLQ PF08880.6 gi|147921264|ref|YP_684922.1| - 0.0031 16.8 0.0 0.0072 15.7 0.0 1.6 1 0 0 1 1 1 1 QLQ Aldedh PF00171.17 gi|147921265|ref|YP_684921.1| - 9.4e-166 551.7 0.0 1.1e-165 551.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|147921265|ref|YP_684921.1| - 0.19 10.9 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) TrmB PF01978.14 gi|147921266|ref|YP_684920.1| - 8.4e-19 67.0 0.1 1.7e-18 66.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB V4R PF02830.13 gi|147921266|ref|YP_684920.1| - 0.021 14.6 0.9 0.035 13.9 0.6 1.4 1 0 0 1 1 1 0 V4R domain HTH_27 PF13463.1 gi|147921266|ref|YP_684920.1| - 0.072 13.4 0.0 0.24 11.7 0.0 2.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.22 gi|147921267|ref|YP_684919.1| - 1.2e-29 103.3 0.0 1.9e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921267|ref|YP_684919.1| - 1.1e-14 55.1 0.4 2.4e-09 37.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|147921267|ref|YP_684919.1| - 1.3e-05 25.6 0.1 0.00078 19.9 0.0 2.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|147921267|ref|YP_684919.1| - 8e-05 21.8 0.3 0.0029 16.7 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|147921267|ref|YP_684919.1| - 0.0051 16.2 0.1 2.3 7.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_33 PF13671.1 gi|147921267|ref|YP_684919.1| - 0.0087 15.9 0.0 0.013 15.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|147921267|ref|YP_684919.1| - 0.012 15.9 0.3 0.024 14.9 0.2 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|147921267|ref|YP_684919.1| - 0.015 14.5 0.2 3.1 6.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|147921267|ref|YP_684919.1| - 0.016 14.6 0.1 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|147921267|ref|YP_684919.1| - 0.068 12.3 0.1 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|147921267|ref|YP_684919.1| - 0.11 12.4 0.2 0.81 9.6 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|147921267|ref|YP_684919.1| - 0.13 11.9 0.3 0.88 9.2 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane_2 PF12679.2 gi|147921268|ref|YP_684918.1| - 8.7e-33 113.3 22.7 1.2e-32 112.9 15.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921268|ref|YP_684918.1| - 3.5e-24 85.2 29.9 1e-23 83.7 20.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147921268|ref|YP_684918.1| - 3.6e-06 26.2 34.5 0.00011 21.4 23.9 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147921268|ref|YP_684918.1| - 0.0043 16.3 32.8 0.067 12.4 22.8 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein VirB8 PF04335.8 gi|147921268|ref|YP_684918.1| - 0.32 10.5 0.0 0.32 10.5 0.0 2.3 3 0 0 3 3 3 0 VirB8 protein DUF165 PF02592.10 gi|147921268|ref|YP_684918.1| - 2.2 8.4 19.1 0.52 10.4 1.2 3.3 1 1 1 3 3 3 0 Uncharacterized ACR, YhhQ family COG1738 MFS_1 PF07690.11 gi|147921269|ref|YP_684917.1| - 1.1e-38 132.9 42.0 2.3e-34 118.6 24.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|147921269|ref|YP_684917.1| - 2.9e-10 39.1 42.4 3.8e-10 38.7 11.9 2.7 1 1 2 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|147921269|ref|YP_684917.1| - 5e-05 22.0 10.6 5e-05 22.0 7.4 3.0 2 1 1 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.2 gi|147921269|ref|YP_684917.1| - 0.0094 15.7 0.5 0.0094 15.7 0.4 3.8 4 0 0 4 4 4 2 MFS_1 like family DDE_Tnp_1 PF01609.16 gi|147921270|ref|YP_687362.1| - 1.1e-05 25.0 0.1 3.9e-05 23.2 0.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain Archease PF01951.11 gi|147921270|ref|YP_687362.1| - 0.11 12.4 0.1 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 Archease protein family (MTH1598/TM1083) Tox-GHH PF15636.1 gi|147921271|ref|YP_684915.1| - 0.072 12.7 0.1 0.47 10.1 0.0 2.0 2 0 0 2 2 2 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin NLPC_P60 PF00877.14 gi|147921271|ref|YP_684915.1| - 0.12 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 NlpC/P60 family Flavodoxin_1 PF00258.20 gi|147921272|ref|YP_684914.1| - 1.2e-11 44.8 0.0 2e-11 44.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|147921272|ref|YP_684914.1| - 1.6e-05 24.3 0.0 2.7e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain FMN_red PF03358.10 gi|147921272|ref|YP_684914.1| - 0.00047 19.6 0.1 0.26 10.7 0.0 2.1 1 1 1 2 2 2 2 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|147921272|ref|YP_684914.1| - 0.0047 16.9 0.0 0.0058 16.6 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|147921272|ref|YP_684914.1| - 0.0094 15.3 0.1 0.21 10.9 0.0 2.1 1 1 1 2 2 2 1 Flavodoxin Fer4_7 PF12838.2 gi|147921273|ref|YP_684913.1| - 1.4e-08 34.9 9.3 2.6e-08 34.1 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921273|ref|YP_684913.1| - 1.1e-07 32.4 8.9 2e-07 31.6 6.1 1.4 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|147921273|ref|YP_684913.1| - 9.6e-07 28.5 9.4 1.9e-06 27.5 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921273|ref|YP_684913.1| - 9.1e-05 22.1 11.1 0.015 15.1 2.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|147921273|ref|YP_684913.1| - 0.00011 21.6 12.1 0.0074 15.8 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147921273|ref|YP_684913.1| - 0.00012 22.3 8.8 0.00023 21.4 6.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921273|ref|YP_684913.1| - 0.00063 19.9 11.5 0.0025 18.0 8.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|147921273|ref|YP_684913.1| - 0.023 15.2 16.9 0.34 11.5 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147921273|ref|YP_684913.1| - 0.023 15.0 10.5 0.073 13.5 1.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147921273|ref|YP_684913.1| - 0.025 14.6 11.6 0.081 12.9 7.9 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147921273|ref|YP_684913.1| - 0.11 12.9 10.9 0.52 10.7 2.1 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147921273|ref|YP_684913.1| - 0.46 10.5 14.9 3.6 7.6 1.5 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147921273|ref|YP_684913.1| - 3 7.7 12.1 64 3.5 8.4 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Rubrerythrin PF02915.12 gi|147921274|ref|YP_684912.1| - 0.0032 17.7 2.9 0.4 10.9 0.0 3.2 3 0 0 3 3 3 2 Rubrerythrin Pyr_redox_2 PF07992.9 gi|147921275|ref|YP_684911.1| - 2.5e-32 112.4 1.8 1.3e-31 110.1 1.3 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|147921275|ref|YP_684911.1| - 2.8e-26 91.6 1.0 6.6e-26 90.4 0.7 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|147921275|ref|YP_684911.1| - 3.4e-15 56.1 0.1 2e-14 53.7 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|147921275|ref|YP_684911.1| - 3.7e-07 30.4 0.2 0.0049 16.9 0.0 2.8 2 2 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|147921275|ref|YP_684911.1| - 0.00024 20.1 0.6 0.36 9.6 0.0 2.6 2 1 0 2 2 2 2 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.14 gi|147921275|ref|YP_684911.1| - 0.0012 18.0 0.0 0.099 11.7 0.0 2.7 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|147921275|ref|YP_684911.1| - 0.0037 16.2 0.1 0.0037 16.2 0.1 3.5 4 1 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|147921275|ref|YP_684911.1| - 0.0062 16.7 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|147921275|ref|YP_684911.1| - 0.007 16.0 0.2 0.069 12.7 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|147921275|ref|YP_684911.1| - 0.0083 15.5 0.1 0.066 12.6 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|147921275|ref|YP_684911.1| - 0.051 12.9 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Tmemb_18A PF09771.4 gi|147921276|ref|YP_684910.1| - 0.0089 16.0 0.6 0.0089 16.0 0.4 2.2 2 1 1 3 3 3 1 Transmembrane protein 188 Oxidored_q2 PF00420.19 gi|147921276|ref|YP_684910.1| - 0.021 14.4 0.9 0.021 14.4 0.6 2.6 3 1 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF3753 PF12575.3 gi|147921276|ref|YP_684910.1| - 2.1 8.2 10.4 3.4 7.5 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3753) PKD_channel PF08016.7 gi|147921276|ref|YP_684910.1| - 6.1 5.1 12.3 29 2.9 8.6 2.2 1 1 0 1 1 1 0 Polycystin cation channel DAO PF01266.19 gi|147921277|ref|YP_684909.1| - 5.1e-47 160.5 0.0 6.3e-47 160.2 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|147921277|ref|YP_684909.1| - 3.2e-14 52.2 0.6 7.8e-14 51.0 0.4 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Pyr_redox_2 PF07992.9 gi|147921277|ref|YP_684909.1| - 4.8e-07 29.8 0.2 1.5e-06 28.2 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|147921277|ref|YP_684909.1| - 1.3e-05 24.2 0.0 1.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|147921277|ref|YP_684909.1| - 2.2e-05 23.7 0.3 3.5e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|147921277|ref|YP_684909.1| - 0.00016 20.6 1.1 0.00044 19.2 0.3 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|147921277|ref|YP_684909.1| - 0.0005 19.2 0.0 0.00074 18.6 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|147921277|ref|YP_684909.1| - 0.00054 19.9 0.8 0.0019 18.2 0.6 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|147921277|ref|YP_684909.1| - 0.00094 19.5 0.7 0.0024 18.2 0.5 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|147921277|ref|YP_684909.1| - 0.0011 18.0 0.1 0.0023 17.0 0.1 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|147921277|ref|YP_684909.1| - 0.0026 16.2 1.2 0.0065 14.9 0.3 1.9 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|147921277|ref|YP_684909.1| - 0.0062 15.4 0.6 0.02 13.7 0.4 1.8 1 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|147921277|ref|YP_684909.1| - 0.0095 16.0 0.5 0.061 13.3 0.4 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|147921277|ref|YP_684909.1| - 0.11 12.1 0.9 0.15 11.6 0.2 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|147921277|ref|YP_684909.1| - 0.11 11.8 0.2 0.2 11.0 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|147921277|ref|YP_684909.1| - 0.14 12.4 0.1 0.51 10.6 0.1 1.9 2 0 0 2 2 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|147921277|ref|YP_684909.1| - 0.14 10.7 0.7 0.21 10.1 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Hemerythrin PF01814.18 gi|147921278|ref|YP_684908.1| - 0.042 14.0 1.5 0.083 13.0 1.0 1.6 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DegS PF05384.6 gi|147921278|ref|YP_684908.1| - 0.045 12.9 0.2 0.06 12.5 0.1 1.3 1 0 0 1 1 1 0 Sensor protein DegS DUF1359 PF07097.6 gi|147921278|ref|YP_684908.1| - 0.13 12.3 0.1 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1359) TPR_1 PF00515.23 gi|147921279|ref|YP_684907.1| - 1.2e-39 132.3 0.0 1.1e-06 27.9 0.0 6.7 6 1 1 7 7 7 6 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147921279|ref|YP_684907.1| - 6.4e-39 131.4 0.0 4.7e-14 51.7 0.0 3.3 2 1 0 3 3 3 3 TPR repeat TPR_2 PF07719.12 gi|147921279|ref|YP_684907.1| - 8.8e-35 115.8 0.5 4.8e-07 29.2 0.0 6.3 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147921279|ref|YP_684907.1| - 6.6e-28 96.7 0.0 1.7e-07 31.7 0.0 4.3 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147921279|ref|YP_684907.1| - 3.3e-23 79.9 0.0 6e-05 22.9 0.0 5.6 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147921279|ref|YP_684907.1| - 2.5e-20 70.6 0.0 0.0049 16.5 0.0 6.3 6 1 0 6 6 6 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147921279|ref|YP_684907.1| - 1.2e-19 69.8 0.3 3.7e-07 29.9 0.0 3.9 1 1 2 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147921279|ref|YP_684907.1| - 1.5e-17 62.5 0.3 2.6e-05 24.4 0.1 5.0 2 2 3 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147921279|ref|YP_684907.1| - 6.9e-17 61.5 0.0 1.2e-05 25.4 0.0 3.5 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147921279|ref|YP_684907.1| - 2.9e-15 55.5 0.0 0.013 15.9 0.0 5.1 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147921279|ref|YP_684907.1| - 2.3e-13 49.8 0.0 0.001 18.9 0.0 4.5 1 1 4 5 5 5 5 Tetratricopeptide repeat NARP1 PF12569.3 gi|147921279|ref|YP_684907.1| - 3.1e-08 32.8 0.0 0.0024 16.7 0.0 2.8 2 1 1 3 3 3 3 NMDA receptor-regulated protein 1 TPR_4 PF07721.9 gi|147921279|ref|YP_684907.1| - 1.1e-07 31.5 2.8 2.2 8.9 0.0 4.6 5 0 0 5 5 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147921279|ref|YP_684907.1| - 1.9e-05 24.1 0.0 20 5.2 0.0 5.4 5 1 1 6 6 6 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|147921279|ref|YP_684907.1| - 0.00052 20.0 0.0 1.6 8.8 0.0 3.3 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.12 gi|147921279|ref|YP_684907.1| - 0.0054 17.0 0.2 0.6 10.4 0.0 3.1 2 2 2 4 4 4 1 Bacterial transcriptional activator domain PPR PF01535.15 gi|147921279|ref|YP_684907.1| - 0.0082 16.0 0.1 41 4.4 0.0 4.2 4 0 0 4 4 4 0 PPR repeat TPR_15 PF13429.1 gi|147921279|ref|YP_684907.1| - 0.026 13.5 0.0 6.6 5.6 0.0 2.9 2 1 1 3 3 3 0 Tetratricopeptide repeat FAT PF02259.18 gi|147921279|ref|YP_684907.1| - 0.055 12.4 0.0 4.4 6.2 0.0 2.9 1 1 2 3 3 3 0 FAT domain DUF362 PF04015.7 gi|147921281|ref|YP_684905.1| - 2.4e-53 180.6 0.0 3e-53 180.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DUF1447 PF07288.6 gi|147921282|ref|YP_684904.1| - 0.0052 16.5 0.6 0.061 13.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1447) SBF PF01758.11 gi|147921283|ref|YP_684903.1| - 7.2e-10 38.5 18.6 1.4e-09 37.5 12.9 1.6 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|147921283|ref|YP_684903.1| - 4e-09 36.0 17.8 6e-09 35.4 12.3 1.3 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) HlyIII PF03006.15 gi|147921283|ref|YP_684903.1| - 0.31 10.4 12.3 0.027 13.8 3.4 2.6 1 1 2 3 3 3 0 Haemolysin-III related DUF202 PF02656.10 gi|147921284|ref|YP_684902.1| - 5.4e-15 55.3 1.9 5.4e-15 55.3 1.3 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF202) DUF1422 PF07226.6 gi|147921284|ref|YP_684902.1| - 0.017 14.8 1.0 0.02 14.6 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1422) DUF2324 PF10086.4 gi|147921284|ref|YP_684902.1| - 0.032 13.4 1.6 0.049 12.8 1.1 1.4 1 0 0 1 1 1 0 Putative membrane peptidase family (DUF2324) DUF360 PF04020.8 gi|147921284|ref|YP_684902.1| - 0.068 13.5 4.1 0.19 12.0 2.9 1.8 1 1 0 1 1 1 0 Membrane protein of unknown function Abhydrolase_9_N PF15420.1 gi|147921284|ref|YP_684902.1| - 0.088 12.5 0.9 0.1 12.3 0.6 1.2 1 0 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus DUF2905 PF11146.3 gi|147921284|ref|YP_684902.1| - 0.84 9.6 4.2 4.6 7.2 2.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2905) AA_permease_C PF13906.1 gi|147921284|ref|YP_684902.1| - 8 6.4 7.8 1.1 9.1 0.3 2.6 3 0 0 3 3 3 0 C-terminus of AA_permease DUF1622 PF07784.6 gi|147921285|ref|YP_684901.1| - 3.3e-27 93.9 0.3 4.9e-27 93.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1622) DUF2976 PF11190.3 gi|147921285|ref|YP_684901.1| - 0.22 11.0 3.7 5.1 6.6 2.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) EamA PF00892.15 gi|147921285|ref|YP_684901.1| - 1 9.4 4.7 0.75 9.8 1.4 1.8 1 1 1 2 2 2 0 EamA-like transporter family HAD PF12710.2 gi|147921286|ref|YP_684900.1| - 8.7e-18 65.1 0.0 1.4e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|147921286|ref|YP_684900.1| - 3.4e-05 24.1 0.0 0.00021 21.5 0.0 2.0 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Lactonase PF10282.4 gi|147921286|ref|YP_684900.1| - 0.053 12.6 0.0 0.077 12.0 0.0 1.1 1 0 0 1 1 1 0 Lactonase, 7-bladed beta-propeller Hydrolase PF00702.21 gi|147921286|ref|YP_684900.1| - 0.081 13.3 0.0 0.46 10.8 0.0 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase RHS_repeat PF05593.9 gi|147921286|ref|YP_684900.1| - 0.15 12.2 1.8 0.82 9.9 0.0 2.7 2 1 0 2 2 2 0 RHS Repeat Sulfatase PF00884.18 gi|147921287|ref|YP_684899.1| - 2.6e-60 204.2 0.0 3.4e-60 203.8 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Sulfatase_C PF14707.1 gi|147921287|ref|YP_684899.1| - 5.4e-07 29.9 0.2 1.1e-06 28.9 0.2 1.5 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Phosphodiest PF01663.17 gi|147921287|ref|YP_684899.1| - 0.0021 17.4 0.0 0.0053 16.1 0.0 1.7 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Radical_SAM PF04055.16 gi|147921288|ref|YP_684898.1| - 5.7e-11 42.8 0.0 8.7e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|147921288|ref|YP_684898.1| - 3.9e-09 36.7 0.4 7.9e-09 35.7 0.3 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|147921288|ref|YP_684898.1| - 1.9e-07 31.2 0.0 5.6e-07 29.7 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147921288|ref|YP_684898.1| - 6.5e-05 22.9 0.0 0.00027 20.9 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain S4 PF01479.20 gi|147921289|ref|YP_684897.1| - 4.5e-14 51.6 0.2 1.1e-13 50.3 0.1 1.8 2 0 0 2 2 2 1 S4 domain Methyltransf_18 PF12847.2 gi|147921289|ref|YP_684897.1| - 2.2e-08 34.6 0.0 3.6e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain S4_2 PF13275.1 gi|147921289|ref|YP_684897.1| - 5.8e-08 32.2 0.0 1.3e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 S4 domain FtsJ PF01728.14 gi|147921289|ref|YP_684897.1| - 2.6e-07 30.7 0.0 5e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|147921289|ref|YP_684897.1| - 3.5e-05 23.4 0.0 4.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147921289|ref|YP_684897.1| - 6.1e-05 23.0 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921289|ref|YP_684897.1| - 0.00058 19.6 0.0 0.0014 18.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|147921289|ref|YP_684897.1| - 0.0029 16.5 0.0 0.0038 16.1 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|147921289|ref|YP_684897.1| - 0.02 14.4 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|147921289|ref|YP_684897.1| - 0.14 11.2 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DNA_gyraseB PF00204.20 gi|147921290|ref|YP_684896.1| - 5.9e-63 211.1 1.2 7.7e-63 210.8 0.1 1.7 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|147921290|ref|YP_684896.1| - 2.6e-30 103.9 0.3 6e-30 102.7 0.2 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|147921290|ref|YP_684896.1| - 5.6e-26 90.4 0.0 1.7e-25 88.9 0.0 1.9 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|147921290|ref|YP_684896.1| - 3.3e-19 68.6 0.1 7.4e-19 67.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|147921290|ref|YP_684896.1| - 2e-05 24.2 0.0 3.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|147921290|ref|YP_684896.1| - 0.013 15.5 0.0 0.58 10.2 0.0 3.1 3 0 0 3 3 3 0 Toprim domain DNA_topoisoIV PF00521.15 gi|147921291|ref|YP_684895.1| - 8.7e-162 538.8 0.1 1.2e-161 538.3 0.1 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|147921291|ref|YP_684895.1| - 1e-60 200.8 10.9 5.1e-13 48.1 0.0 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller LigA PF07746.6 gi|147921291|ref|YP_684895.1| - 0.058 13.4 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit GATase_2 PF00310.16 gi|147921292|ref|YP_684894.1| - 2.7e-22 78.9 0.0 3.3e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|147921292|ref|YP_684894.1| - 2.7e-12 46.7 0.0 1.9e-11 44.0 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|147921292|ref|YP_684894.1| - 5.2e-07 29.4 0.0 1.2e-05 25.0 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain Glu_synthase PF01645.12 gi|147921293|ref|YP_684893.1| - 7.2e-132 439.7 0.0 1.1e-131 439.1 0.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|147921293|ref|YP_684893.1| - 1.4e-10 40.9 0.0 1.1e-06 28.1 0.0 2.5 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.13 gi|147921293|ref|YP_684893.1| - 1.5e-10 40.4 3.5 4.3e-08 32.3 0.9 2.6 3 0 0 3 3 3 2 FMN-dependent dehydrogenase Fer4_7 PF12838.2 gi|147921293|ref|YP_684893.1| - 1.4e-06 28.5 18.9 2.9e-06 27.5 9.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921293|ref|YP_684893.1| - 2.6e-06 28.0 15.3 0.00019 22.1 1.0 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|147921293|ref|YP_684893.1| - 4e-06 26.5 11.4 4e-06 26.5 7.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921293|ref|YP_684893.1| - 8.4e-06 25.9 12.8 8.4e-06 25.9 8.9 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147921293|ref|YP_684893.1| - 2.1e-05 23.9 12.7 0.00016 21.1 2.3 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain IMPDH PF00478.20 gi|147921293|ref|YP_684893.1| - 3.5e-05 22.8 6.6 4e-05 22.6 3.8 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Fer4_10 PF13237.1 gi|147921293|ref|YP_684893.1| - 4e-05 23.3 21.8 0.00069 19.3 10.9 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain His_biosynth PF00977.16 gi|147921293|ref|YP_684893.1| - 0.00023 20.4 0.0 0.00043 19.6 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_17 PF13534.1 gi|147921293|ref|YP_684893.1| - 0.0013 19.0 14.0 0.046 14.0 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain NMO PF03060.10 gi|147921293|ref|YP_684893.1| - 0.0018 17.5 3.5 0.015 14.4 2.5 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase Fer4_8 PF13183.1 gi|147921293|ref|YP_684893.1| - 0.0035 17.3 17.2 0.039 13.9 9.8 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain PcrB PF01884.12 gi|147921293|ref|YP_684893.1| - 0.0062 15.8 1.8 0.016 14.4 0.4 2.0 1 1 1 2 2 2 1 PcrB family Fer4_11 PF13247.1 gi|147921293|ref|YP_684893.1| - 0.013 15.3 13.7 0.019 14.8 6.3 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147921293|ref|YP_684893.1| - 0.026 14.4 3.7 0.026 14.4 2.5 3.5 3 0 0 3 3 2 0 4Fe-4S binding domain DHO_dh PF01180.16 gi|147921293|ref|YP_684893.1| - 0.11 11.4 0.7 0.25 10.2 0.3 1.7 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Trp_syntA PF00290.15 gi|147921293|ref|YP_684893.1| - 0.16 10.4 0.1 0.29 9.6 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Fer4_4 PF12800.2 gi|147921293|ref|YP_684893.1| - 1.8 9.1 24.4 0.2 12.0 0.8 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147921293|ref|YP_684893.1| - 2.9 7.9 28.1 0.039 13.8 1.8 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain GXGXG PF01493.14 gi|147921294|ref|YP_684892.1| - 8e-37 126.2 10.8 9.6e-37 125.9 7.5 1.1 1 0 0 1 1 1 1 GXGXG motif ABC_tran PF00005.22 gi|147921295|ref|YP_684891.1| - 5.4e-29 101.2 0.0 8.8e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921295|ref|YP_684891.1| - 3.7e-13 50.0 0.1 3.9e-07 30.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|147921295|ref|YP_684891.1| - 4.8e-05 22.5 0.0 0.00024 20.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|147921295|ref|YP_684891.1| - 0.00091 18.5 0.2 0.56 9.3 0.0 2.6 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.1 gi|147921295|ref|YP_684891.1| - 0.0014 19.1 0.0 0.0025 18.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SbcCD_C PF13558.1 gi|147921295|ref|YP_684891.1| - 0.0021 17.9 0.1 0.045 13.6 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|147921295|ref|YP_684891.1| - 0.0044 17.3 0.0 0.0059 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|147921295|ref|YP_684891.1| - 0.021 14.2 0.0 0.051 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|147921295|ref|YP_684891.1| - 0.032 13.7 0.2 0.06 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|147921295|ref|YP_684891.1| - 0.032 14.2 1.0 0.4 10.6 0.3 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|147921295|ref|YP_684891.1| - 0.04 14.0 0.5 2 8.5 0.4 2.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|147921295|ref|YP_684891.1| - 0.047 13.1 0.1 0.14 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_13 PF13166.1 gi|147921295|ref|YP_684891.1| - 0.066 11.6 0.1 4.9 5.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|147921295|ref|YP_684891.1| - 0.077 12.7 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|147921295|ref|YP_684891.1| - 0.12 11.1 0.1 0.24 10.1 0.1 1.4 1 0 0 1 1 1 0 ArgK protein IstB_IS21 PF01695.12 gi|147921295|ref|YP_684891.1| - 0.22 10.9 1.8 2.7 7.3 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein ABC2_membrane_2 PF12679.2 gi|147921296|ref|YP_684890.1| - 2.2e-20 72.6 21.7 2.7e-20 72.3 15.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921296|ref|YP_684890.1| - 1.5e-17 63.5 27.6 2.2e-17 62.9 19.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147921296|ref|YP_684890.1| - 1.4e-06 27.6 30.3 1.4e-06 27.6 21.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147921296|ref|YP_684890.1| - 0.00018 20.8 20.2 0.00018 20.8 14.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein Transglut_core PF01841.14 gi|147921297|ref|YP_684889.1| - 2.2e-05 24.6 0.1 3.7e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4017 PF13209.1 gi|147921299|ref|YP_684887.1| - 0.019 14.7 3.8 0.022 14.5 0.4 2.7 2 1 0 3 3 3 0 Protein of unknown function (DUF4017) DUF504 PF04457.7 gi|147921300|ref|YP_684886.1| - 2e-15 56.6 0.2 2.7e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF504) Lactamase_B PF00753.22 gi|147921301|ref|YP_684885.1| - 6.8e-19 68.2 0.7 1.1e-18 67.5 0.5 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147921301|ref|YP_684885.1| - 0.00014 21.4 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|147921301|ref|YP_684885.1| - 0.014 15.1 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain tRNA-synt_2 PF00152.15 gi|147921302|ref|YP_684884.1| - 3.3e-88 295.6 0.0 4.1e-88 295.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|147921302|ref|YP_684884.1| - 1.8e-13 50.1 0.1 3.4e-13 49.2 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Histidinol_dh PF00815.15 gi|147921303|ref|YP_684883.1| - 2.9e-155 516.9 8.2 3.3e-155 516.7 5.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Acetyltransf_1 PF00583.19 gi|147921304|ref|YP_684882.1| - 4.8e-17 61.7 0.1 6.9e-17 61.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|147921304|ref|YP_684882.1| - 6.1e-10 38.7 0.0 1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|147921304|ref|YP_684882.1| - 4.6e-09 36.3 0.2 7.5e-09 35.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|147921304|ref|YP_684882.1| - 2.8e-07 30.5 0.0 4.4e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|147921304|ref|YP_684882.1| - 1.2e-06 28.6 0.0 1.5e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|147921304|ref|YP_684882.1| - 6.3e-06 26.4 0.0 7.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|147921304|ref|YP_684882.1| - 4.4e-05 23.4 0.1 9.1e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|147921304|ref|YP_684882.1| - 0.0023 17.7 0.0 0.0041 16.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|147921304|ref|YP_684882.1| - 0.028 14.3 0.0 0.06 13.2 0.0 1.6 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Peptidase_M50B PF13398.1 gi|147921305|ref|YP_684881.1| - 0.071 12.4 10.0 0.088 12.1 3.8 2.1 1 1 1 2 2 2 0 Peptidase M50B-like RHH_1 PF01402.16 gi|147921306|ref|YP_684880.1| - 0.0044 16.8 3.5 0.088 12.7 0.3 2.7 1 1 1 2 2 2 2 Ribbon-helix-helix protein, copG family QueC PF06508.8 gi|147921307|ref|YP_684879.1| - 6.1e-56 189.0 0.0 6.9e-56 188.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|147921307|ref|YP_684879.1| - 0.00037 20.0 0.0 0.0014 18.1 0.0 1.8 2 0 0 2 2 2 1 PP-loop family ThiI PF02568.9 gi|147921307|ref|YP_684879.1| - 0.011 15.1 0.0 0.96 8.8 0.0 2.2 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) F420_ligase PF01996.11 gi|147921307|ref|YP_684879.1| - 0.04 12.9 0.0 0.15 11.1 0.0 1.7 1 1 1 2 2 2 0 F420-0:Gamma-glutamyl ligase DUF366 PF04017.7 gi|147921308|ref|YP_684878.1| - 3.6e-73 244.7 0.0 4e-73 244.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) Fer4_14 PF13394.1 gi|147921309|ref|YP_684877.1| - 8.8e-16 58.0 0.0 1.4e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|147921309|ref|YP_684877.1| - 2.7e-09 37.4 0.1 4.2e-09 36.8 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147921309|ref|YP_684877.1| - 3.3e-07 30.5 0.0 4.9e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PTPS PF01242.14 gi|147921310|ref|YP_684876.1| - 2.1e-27 95.2 0.0 2.4e-27 95.0 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase DUF4013 PF13197.1 gi|147921311|ref|YP_684875.1| - 1.1e-20 73.7 31.5 1.1e-20 73.7 21.8 2.2 2 1 0 2 2 2 1 Protein of unknown function (DUF4013) PhoU PF01895.14 gi|147921312|ref|YP_001218862.1| - 2e-30 105.0 3.9 1.2e-14 54.5 0.4 2.1 2 0 0 2 2 2 2 PhoU domain HAD_2 PF13419.1 gi|147921313|ref|YP_684873.1| - 8.8e-25 87.9 0.0 1.3e-24 87.4 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|147921313|ref|YP_684873.1| - 1.6e-13 50.1 0.0 2.8e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|147921313|ref|YP_684873.1| - 4.5e-07 30.5 0.0 9.9e-07 29.3 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|147921313|ref|YP_684873.1| - 0.036 13.7 0.1 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase DUF3895 PF13034.1 gi|147921313|ref|YP_684873.1| - 0.045 13.2 2.2 0.14 11.6 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3895) MazG-like PF12643.2 gi|147921314|ref|YP_684872.1| - 0.005 16.7 0.3 0.0089 15.9 0.2 1.5 1 0 0 1 1 1 1 MazG-like family PTPlike_phytase PF14566.1 gi|147921314|ref|YP_684872.1| - 0.1 12.6 0.4 0.2 11.7 0.2 1.5 1 1 0 1 1 1 0 Inositol hexakisphosphate PspA_IM30 PF04012.7 gi|147921314|ref|YP_684872.1| - 0.39 10.0 13.1 0.62 9.3 8.4 1.6 1 1 1 2 2 2 0 PspA/IM30 family HALZ PF02183.13 gi|147921314|ref|YP_684872.1| - 0.46 10.2 3.6 2.2 8.0 0.5 2.7 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF972 PF06156.8 gi|147921314|ref|YP_684872.1| - 0.64 10.3 4.0 10 6.5 0.8 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF972) CENP-Q PF13094.1 gi|147921314|ref|YP_684872.1| - 5.3 7.0 8.2 0.48 10.4 0.2 2.5 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Peptidase_M48 PF01435.13 gi|147921317|ref|YP_684869.1| - 2.2e-43 148.4 0.1 2.9e-43 148.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|147921317|ref|YP_684869.1| - 6.2e-07 28.6 1.1 8.7e-07 28.2 0.1 1.8 2 0 0 2 2 2 1 BlaR1 peptidase M56 G3P_acyltransf PF02660.10 gi|147921317|ref|YP_684869.1| - 0.048 13.2 0.2 0.048 13.2 0.1 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate acyltransferase DUF2201_N PF13203.1 gi|147921317|ref|YP_684869.1| - 0.16 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF2254 PF10011.4 gi|147921317|ref|YP_684869.1| - 0.41 9.0 8.3 0.017 13.6 1.5 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) DUF1129 PF06570.6 gi|147921317|ref|YP_684869.1| - 0.48 9.7 7.3 1.9 7.7 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF2207 PF09972.4 gi|147921317|ref|YP_684869.1| - 0.75 8.3 7.6 0.17 10.4 0.2 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) YwiC PF14256.1 gi|147921317|ref|YP_684869.1| - 0.87 9.6 8.3 7.5 6.6 0.2 2.5 2 0 0 2 2 2 0 YwiC-like protein UPF0104 PF03706.8 gi|147921317|ref|YP_684869.1| - 0.95 8.6 11.7 0.2 10.9 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0104) PAS_9 PF13426.1 gi|147921318|ref|YP_684868.1| - 4e-23 81.7 0.0 9.8e-10 38.7 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|147921318|ref|YP_684868.1| - 3.2e-22 78.4 0.0 5.5e-11 42.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|147921318|ref|YP_684868.1| - 1.2e-16 60.7 0.0 1.3e-06 28.4 0.0 3.9 4 0 0 4 4 4 2 PAS fold GAF_2 PF13185.1 gi|147921318|ref|YP_684868.1| - 2.2e-13 50.9 0.0 1.9e-09 38.1 0.0 3.5 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|147921318|ref|YP_684868.1| - 1.2e-12 48.0 0.0 5.4e-10 39.4 0.0 3.4 3 1 1 4 4 4 1 GAF domain PAS_8 PF13188.1 gi|147921318|ref|YP_684868.1| - 3.4e-11 42.5 0.1 0.0018 18.0 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF PF01590.21 gi|147921318|ref|YP_684868.1| - 2.5e-05 24.4 0.3 0.0001 22.4 0.1 2.2 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|147921318|ref|YP_684868.1| - 0.00028 20.9 0.0 0.0026 17.8 0.0 2.5 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.2 gi|147921318|ref|YP_684868.1| - 0.00037 20.4 0.0 0.02 14.8 0.0 2.8 2 1 0 2 2 2 1 PAS fold DoxX_2 PF13564.1 gi|147921319|ref|YP_684867.1| - 0.16 11.9 4.5 0.2 11.6 3.1 1.0 1 0 0 1 1 1 0 DoxX-like family Rab5ip PF07019.7 gi|147921319|ref|YP_684867.1| - 9.1 6.5 8.7 16 5.7 6.0 1.5 1 1 0 1 1 1 0 Rab5-interacting protein (Rab5ip) PRA-CH PF01502.13 gi|147921320|ref|YP_684866.1| - 5.4e-37 125.2 1.5 6.5e-37 125.0 1.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase T2SE PF00437.15 gi|147921321|ref|YP_684865.1| - 1.4e-13 50.4 0.0 2.2e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|147921321|ref|YP_684865.1| - 7.7e-08 31.8 0.6 3.6e-07 29.7 0.2 2.4 2 0 0 2 2 2 1 KH domain AAA_17 PF13207.1 gi|147921321|ref|YP_684865.1| - 7.3e-05 23.5 0.0 0.00028 21.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain KH_3 PF13014.1 gi|147921321|ref|YP_684865.1| - 0.00015 21.3 0.3 0.0013 18.3 0.0 2.7 3 0 0 3 3 2 1 KH domain AAA_33 PF13671.1 gi|147921321|ref|YP_684865.1| - 0.00064 19.6 0.0 0.0019 18.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|147921321|ref|YP_684865.1| - 0.0007 19.0 0.1 0.0029 17.1 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|147921321|ref|YP_684865.1| - 0.0019 18.5 0.0 0.015 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain PIN PF01850.16 gi|147921321|ref|YP_684865.1| - 0.0019 18.5 0.0 0.0054 17.0 0.0 1.8 1 0 0 1 1 1 1 PIN domain AAA_19 PF13245.1 gi|147921321|ref|YP_684865.1| - 0.004 16.8 0.0 0.0091 15.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|147921321|ref|YP_684865.1| - 0.0046 16.0 0.0 0.0082 15.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|147921321|ref|YP_684865.1| - 0.0052 16.6 0.0 0.016 15.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|147921321|ref|YP_684865.1| - 0.0061 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|147921321|ref|YP_684865.1| - 0.0069 16.5 0.0 0.022 14.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|147921321|ref|YP_684865.1| - 0.0084 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain PIN_4 PF13638.1 gi|147921321|ref|YP_684865.1| - 0.016 15.2 0.1 0.3 11.1 0.0 2.8 3 0 0 3 3 3 0 PIN domain KH_2 PF07650.12 gi|147921321|ref|YP_684865.1| - 0.017 14.6 2.4 0.017 14.6 1.6 2.0 2 0 0 2 2 2 0 KH domain AAA PF00004.24 gi|147921321|ref|YP_684865.1| - 0.023 14.9 0.0 0.058 13.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|147921321|ref|YP_684865.1| - 0.025 14.2 0.0 0.08 12.6 0.0 1.9 1 0 0 1 1 1 0 NTPase AAA_25 PF13481.1 gi|147921321|ref|YP_684865.1| - 0.036 13.4 0.0 0.087 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|147921321|ref|YP_684865.1| - 0.058 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|147921321|ref|YP_684865.1| - 0.064 13.5 0.0 0.2 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|147921321|ref|YP_684865.1| - 0.066 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PPV_E1_C PF00519.12 gi|147921321|ref|YP_684865.1| - 0.09 11.3 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus helicase RNA_helicase PF00910.17 gi|147921321|ref|YP_684865.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|147921321|ref|YP_684865.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain DUF378 PF04070.7 gi|147921323|ref|YP_684863.1| - 4.9e-18 64.5 5.6 5.5e-18 64.3 3.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF378) DUF4282 PF14110.1 gi|147921323|ref|YP_684863.1| - 0.3 11.2 3.7 0.42 10.8 2.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF788 PF05620.6 gi|147921323|ref|YP_684863.1| - 1.2 8.9 3.4 0.94 9.3 0.1 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF788) DUF2628 PF10947.3 gi|147921323|ref|YP_684863.1| - 2.4 8.0 6.1 2.9 7.7 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF4234 PF14018.1 gi|147921323|ref|YP_684863.1| - 6.2 6.6 7.1 1.3e+02 2.3 4.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) DDE_Tnp_1 PF01609.16 gi|147921324|ref|YP_684862.1| - 9.3e-17 61.2 0.0 1.5e-16 60.5 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.6 gi|147921324|ref|YP_684862.1| - 1.6e-11 43.9 0.1 3.2e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_3 PF13612.1 gi|147921324|ref|YP_684862.1| - 2.8e-06 27.1 0.0 5.6e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_assoc PF13808.1 gi|147921324|ref|YP_684862.1| - 0.046 13.3 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 DDE_Tnp_1-associated DDE_Tnp_1_5 PF13737.1 gi|147921324|ref|YP_684862.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|147921324|ref|YP_684862.1| - 0.21 11.6 1.2 0.38 10.7 0.5 1.6 2 0 0 2 2 2 0 Transposase DDE domain SIR2_2 PF13289.1 gi|147921325|ref|YP_684861.1| - 7e-33 113.5 3.3 1.5e-32 112.4 2.3 1.6 1 0 0 1 1 1 1 SIR2-like domain CAAP1 PF15335.1 gi|147921325|ref|YP_684861.1| - 0.032 14.4 9.4 4.8 7.4 0.0 5.1 5 0 0 5 5 5 0 Caspase activity and apoptosis inhibitor 1 Tmpp129 PF10272.4 gi|147921325|ref|YP_684861.1| - 0.05 12.3 0.5 0.099 11.3 0.4 1.5 1 0 0 1 1 1 0 Putative transmembrane protein precursor zf-ISL3 PF14690.1 gi|147921326|ref|YP_684860.1| - 0.074 13.0 0.5 4 7.5 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.6 gi|147921326|ref|YP_684860.1| - 0.091 12.5 1.7 0.22 11.3 1.2 1.6 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like ATC_hydrolase PF14196.1 gi|147921326|ref|YP_684860.1| - 0.2 12.0 1.7 0.29 11.5 0.3 1.9 2 1 0 2 2 2 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Cas_Cas1 PF01867.11 gi|147921327|ref|YP_684859.1| - 9.5e-68 228.2 1.2 1.2e-67 227.9 0.8 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Mad3_BUB1_II PF08171.6 gi|147921327|ref|YP_684859.1| - 0.093 12.6 2.6 0.47 10.3 0.2 2.5 2 0 0 2 2 2 0 Mad3/BUB1 homology region 2 HTH_42 PF06224.7 gi|147921329|ref|YP_684857.1| - 0.041 13.2 0.0 0.046 13.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain zf-CHY PF05495.7 gi|147921330|ref|YP_684856.1| - 0.012 15.7 0.5 0.012 15.7 0.4 2.3 3 0 0 3 3 3 0 CHY zinc finger DNA_pol_B PF00136.16 gi|147921331|ref|YP_684855.1| - 2e-07 30.1 0.0 0.0052 15.6 0.0 2.5 2 1 0 2 2 2 2 DNA polymerase family B Caveolin PF01146.12 gi|147921332|ref|YP_684854.1| - 0.094 12.2 1.5 0.28 10.7 1.0 1.8 1 0 0 1 1 1 0 Caveolin Claudin_2 PF13903.1 gi|147921332|ref|YP_684854.1| - 0.66 9.6 5.4 0.48 10.0 2.1 2.1 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction zf-AN1 PF01428.11 gi|147921333|ref|YP_684853.1| - 9e-12 44.6 5.6 1.5e-11 43.9 3.9 1.3 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1183 PF06682.7 gi|147921333|ref|YP_684853.1| - 0.13 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1183) zf-HIT PF04438.11 gi|147921333|ref|YP_684853.1| - 1.6 8.4 9.5 3.6 7.3 6.6 1.5 1 0 0 1 1 1 0 HIT zinc finger UbiA PF01040.13 gi|147921335|ref|YP_684851.1| - 9.3e-21 74.1 18.7 9.3e-21 74.1 13.0 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family Tic20 PF09685.5 gi|147921335|ref|YP_684851.1| - 0.00052 19.9 2.6 0.00052 19.9 1.8 4.5 3 3 1 4 4 4 1 Tic20-like protein PAS_3 PF08447.6 gi|147921336|ref|YP_684850.1| - 8e-24 83.5 0.0 1.3e-15 57.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|147921336|ref|YP_684850.1| - 1.1e-21 76.6 0.0 2.5e-21 75.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147921336|ref|YP_684850.1| - 8.9e-17 61.3 0.1 1.3e-07 31.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|147921336|ref|YP_684850.1| - 7.3e-14 51.7 0.0 7.6e-06 25.9 0.0 2.6 2 1 0 2 2 2 2 PAS fold PAS PF00989.19 gi|147921336|ref|YP_684850.1| - 1.7e-07 30.9 0.0 6.1e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|147921336|ref|YP_684850.1| - 2.4e-07 30.3 0.0 7.1e-07 28.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|147921336|ref|YP_684850.1| - 8.8e-05 22.2 0.0 0.00022 21.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|147921336|ref|YP_684850.1| - 0.0017 18.0 0.0 0.0047 16.5 0.0 1.7 1 0 0 1 1 1 1 GHKL domain Mtc PF03820.12 gi|147921337|ref|YP_684849.1| - 0.053 12.1 0.0 0.063 11.9 0.0 1.2 1 0 0 1 1 1 0 Tricarboxylate carrier Ada_Zn_binding PF02805.11 gi|147921338|ref|YP_684848.1| - 0.00094 18.7 0.1 0.0026 17.3 0.0 1.8 1 0 0 1 1 1 1 Metal binding domain of Ada TFIIA PF03153.8 gi|147921338|ref|YP_684848.1| - 3.5 7.4 11.4 4.2 7.1 7.9 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Response_reg PF00072.19 gi|147921339|ref|YP_684847.1| - 1.6e-05 24.8 0.0 2.5e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 Response regulator receiver domain Glyco_trans_4_3 PF12000.3 gi|147921339|ref|YP_684847.1| - 0.066 12.8 0.0 0.067 12.8 0.0 1.1 1 0 0 1 1 1 0 Gkycosyl transferase family 4 group Aldolase_2 PF10120.4 gi|147921339|ref|YP_684847.1| - 0.07 12.5 0.0 0.081 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative aldolase PAS_3 PF08447.6 gi|147921340|ref|YP_684846.1| - 6.8e-25 86.9 0.1 1.1e-20 73.5 0.2 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|147921340|ref|YP_684846.1| - 1.5e-23 82.6 0.1 4e-13 49.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|147921340|ref|YP_684846.1| - 4e-23 81.7 0.0 2.5e-13 50.2 0.0 2.5 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|147921340|ref|YP_684846.1| - 8.9e-23 80.1 0.1 2e-22 78.9 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147921340|ref|YP_684846.1| - 2.7e-13 49.9 0.1 6.5e-06 26.1 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|147921340|ref|YP_684846.1| - 1.4e-07 31.1 0.3 7.4e-07 28.8 0.0 2.4 4 0 0 4 4 4 1 PAS domain HATPase_c_2 PF13581.1 gi|147921340|ref|YP_684846.1| - 0.00013 21.7 0.1 0.16 11.7 0.0 2.4 2 0 0 2 2 2 2 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147921340|ref|YP_684846.1| - 0.00024 20.7 0.0 0.00043 19.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|147921340|ref|YP_684846.1| - 0.00045 20.1 0.0 0.027 14.4 0.0 3.0 2 1 1 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|147921340|ref|YP_684846.1| - 0.00089 19.2 1.6 4.1 7.4 0.0 4.2 3 2 0 3 3 3 1 PAS fold HATPase_c_5 PF14501.1 gi|147921340|ref|YP_684846.1| - 0.0025 17.4 0.0 0.0079 15.8 0.0 1.8 1 0 0 1 1 1 1 GHKL domain DUF1408 PF07193.6 gi|147921340|ref|YP_684846.1| - 0.035 13.6 0.3 2.3 7.8 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1408) ACT PF01842.20 gi|147921340|ref|YP_684846.1| - 0.078 12.4 1.5 2.5 7.6 0.1 3.2 3 0 0 3 3 3 0 ACT domain 4HBT_2 PF13279.1 gi|147921340|ref|YP_684846.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.6 1 0 0 1 1 1 0 Thioesterase-like superfamily HisKA PF00512.20 gi|147921340|ref|YP_684846.1| - 0.27 11.2 3.4 0.7 9.9 0.2 2.6 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF4480 PF13715.1 gi|147921342|ref|YP_684844.1| - 0.67 10.0 4.7 0.43 10.6 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4480) Glyoxalase PF00903.20 gi|147921343|ref|YP_684843.1| - 8.4e-16 58.1 0.1 1.1e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|147921343|ref|YP_684843.1| - 1.1e-15 58.1 0.0 1.5e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|147921343|ref|YP_684843.1| - 0.00082 19.3 0.0 0.01 15.8 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HEAT_2 PF13646.1 gi|147921344|ref|YP_684842.1| - 4.5e-20 71.7 2.9 4e-14 52.6 0.7 2.3 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|147921344|ref|YP_684842.1| - 2.3e-11 43.0 6.4 0.0092 16.3 0.0 4.2 4 0 0 4 4 4 3 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|147921344|ref|YP_684842.1| - 1.2e-07 31.1 0.6 0.0045 16.9 0.0 3.9 4 0 0 4 4 4 2 HEAT repeat Arm PF00514.18 gi|147921344|ref|YP_684842.1| - 1.3e-06 27.9 0.3 0.61 9.9 0.1 4.1 3 1 1 4 4 4 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.1 gi|147921344|ref|YP_684842.1| - 2.1e-06 28.0 8.4 0.0016 18.9 0.8 4.0 3 1 1 4 4 4 3 HEAT-like repeat ERAP1_C PF11838.3 gi|147921344|ref|YP_684842.1| - 0.051 12.8 0.0 0.11 11.7 0.0 1.5 2 0 0 2 2 2 0 ERAP1-like C-terminal domain eIF-1a PF01176.14 gi|147921345|ref|YP_684841.1| - 2.2e-23 81.4 1.9 4.6e-23 80.4 1.0 1.6 1 1 1 2 2 2 1 Translation initiation factor 1A / IF-1 CarboxypepD_reg PF13620.1 gi|147921346|ref|YP_684840.1| - 0.0023 17.9 0.0 0.0059 16.6 0.0 1.8 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.16 gi|147921346|ref|YP_684840.1| - 0.053 12.7 0.0 0.09 12.0 0.0 1.4 1 1 0 1 1 1 0 Dioxygenase CxxCxxCC PF03692.10 gi|147921348|ref|YP_684838.1| - 1e-07 32.3 0.2 1.8e-07 31.5 0.2 1.4 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain CheR PF01739.13 gi|147921349|ref|YP_684837.1| - 4.6e-56 189.2 0.0 5.6e-56 188.9 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|147921349|ref|YP_684837.1| - 2e-17 62.2 0.8 3.8e-17 61.3 0.5 1.5 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|147921349|ref|YP_684837.1| - 1.9e-06 28.2 0.1 2.5e-05 24.6 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921349|ref|YP_684837.1| - 3.8e-05 24.2 0.0 7.1e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921349|ref|YP_684837.1| - 0.00051 19.7 0.0 0.00077 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147921349|ref|YP_684837.1| - 0.0011 19.4 0.0 0.0085 16.5 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147921349|ref|YP_684837.1| - 0.0054 17.0 0.0 0.031 14.6 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147921349|ref|YP_684837.1| - 0.016 14.7 0.0 0.45 10.1 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|147921349|ref|YP_684837.1| - 0.035 12.4 0.0 0.054 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Pox_MCEL PF03291.11 gi|147921349|ref|YP_684837.1| - 0.038 12.8 0.0 0.059 12.2 0.0 1.3 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_2 PF00891.13 gi|147921349|ref|YP_684837.1| - 0.12 11.4 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase PALP PF00291.20 gi|147921350|ref|YP_684836.1| - 1.7e-75 254.1 0.2 1.9e-75 253.9 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_24 PF13412.1 gi|147921351|ref|YP_684835.1| - 1.4e-07 30.8 0.2 2.8e-05 23.3 0.1 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147921351|ref|YP_684835.1| - 4.4e-06 26.2 0.0 4.1e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 MarR family PQQ_3 PF13570.1 gi|147921351|ref|YP_684835.1| - 0.00031 20.9 13.2 0.8 10.0 0.0 7.7 8 2 0 8 8 8 1 PQQ-like domain HTH_IclR PF09339.5 gi|147921351|ref|YP_684835.1| - 0.00031 20.2 0.0 0.069 12.7 0.0 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|147921351|ref|YP_684835.1| - 0.00052 19.6 0.0 0.22 11.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family CarboxypepD_reg PF13620.1 gi|147921351|ref|YP_684835.1| - 0.0007 19.6 0.8 0.023 14.7 0.1 3.0 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain HTH_27 PF13463.1 gi|147921351|ref|YP_684835.1| - 0.017 15.4 0.0 0.039 14.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.8 gi|147921351|ref|YP_684835.1| - 0.049 13.0 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Cna_B PF05738.8 gi|147921351|ref|YP_684835.1| - 0.15 11.8 1.1 3.1 7.6 0.0 3.3 3 0 0 3 3 3 0 Cna protein B-type domain OAD_gamma PF04277.8 gi|147921352|ref|YP_684834.1| - 0.0063 16.8 0.1 0.014 15.7 0.0 1.6 1 0 0 1 1 1 1 Oxaloacetate decarboxylase, gamma chain TALPID3 PF15324.1 gi|147921352|ref|YP_684834.1| - 0.035 11.4 3.5 0.037 11.3 2.4 1.1 1 0 0 1 1 1 0 Hedgehog signalling target Keratin PF02422.11 gi|147921352|ref|YP_684834.1| - 0.044 13.7 0.9 0.078 12.9 0.6 1.4 1 0 0 1 1 1 0 Keratin FAP PF07174.6 gi|147921352|ref|YP_684834.1| - 0.09 12.0 6.2 0.13 11.5 4.3 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) Trypan_PARP PF05887.6 gi|147921352|ref|YP_684834.1| - 0.19 11.5 6.2 0.4 10.5 4.3 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF1180 PF06679.7 gi|147921352|ref|YP_684834.1| - 7.4 6.4 7.2 23 4.8 5.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) CbiM PF01891.11 gi|147921353|ref|YP_684833.1| - 4.8e-34 117.7 24.8 5.5e-34 117.5 17.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|147921353|ref|YP_684833.1| - 2.6e-08 33.9 24.1 2.6e-08 33.9 16.7 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3816) DUF4131 PF13567.1 gi|147921353|ref|YP_684833.1| - 2.6 7.4 16.2 0.043 13.2 4.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Polysacc_synt_C PF14667.1 gi|147921353|ref|YP_684833.1| - 4.8 6.9 32.7 10 5.9 14.2 2.8 1 1 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain ABC_tran PF00005.22 gi|147921354|ref|YP_684832.1| - 3.5e-29 101.8 0.0 4.9e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921354|ref|YP_684832.1| - 2.7e-12 47.2 0.0 3.8e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147921354|ref|YP_684832.1| - 1.4e-09 37.5 0.3 2.1e-08 33.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|147921354|ref|YP_684832.1| - 1.4e-05 24.3 0.0 0.045 12.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|147921354|ref|YP_684832.1| - 5.7e-05 22.5 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ArgK PF03308.11 gi|147921354|ref|YP_684832.1| - 0.00039 19.2 0.0 0.00072 18.4 0.0 1.4 1 0 0 1 1 1 1 ArgK protein AAA_22 PF13401.1 gi|147921354|ref|YP_684832.1| - 0.0008 19.5 0.2 0.0075 16.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|147921354|ref|YP_684832.1| - 0.00087 17.8 0.1 0.1 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|147921354|ref|YP_684832.1| - 0.0013 18.1 0.0 0.11 11.9 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain AAA_28 PF13521.1 gi|147921354|ref|YP_684832.1| - 0.0022 17.9 0.1 0.32 10.9 0.1 2.7 3 0 0 3 3 3 1 AAA domain cobW PF02492.14 gi|147921354|ref|YP_684832.1| - 0.0054 16.1 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|147921354|ref|YP_684832.1| - 0.0055 17.0 0.1 0.032 14.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|147921354|ref|YP_684832.1| - 0.0072 16.6 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147921354|ref|YP_684832.1| - 0.0077 16.2 0.2 0.07 13.1 0.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|147921354|ref|YP_684832.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|147921354|ref|YP_684832.1| - 0.015 15.1 0.1 0.022 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|147921354|ref|YP_684832.1| - 0.016 14.4 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|147921354|ref|YP_684832.1| - 0.031 13.6 0.1 1.5 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|147921354|ref|YP_684832.1| - 0.046 14.5 0.2 0.098 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|147921354|ref|YP_684832.1| - 0.079 12.6 0.0 0.29 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BCA_ABC_TP_C PF12399.3 gi|147921354|ref|YP_684832.1| - 0.13 12.0 0.0 0.37 10.5 0.0 1.9 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter Miro PF08477.8 gi|147921354|ref|YP_684832.1| - 0.14 12.6 0.0 0.3 11.6 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein CbiQ PF02361.11 gi|147921355|ref|YP_684831.1| - 8e-24 84.4 19.9 1.1e-23 84.0 13.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein Fe_dep_repr_C PF02742.10 gi|147921356|ref|YP_684830.1| - 1.2e-13 50.5 0.0 2.2e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|147921356|ref|YP_684830.1| - 3.2e-10 39.8 0.0 4.5e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|147921356|ref|YP_684830.1| - 4.8e-05 22.9 0.0 0.00014 21.4 0.0 1.7 2 1 0 2 2 2 1 MarR family FeoC PF09012.5 gi|147921356|ref|YP_684830.1| - 0.0026 17.4 0.7 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|147921356|ref|YP_684830.1| - 0.0034 17.0 0.0 0.015 14.9 0.0 2.0 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|147921356|ref|YP_684830.1| - 0.004 16.8 0.0 0.0073 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|147921356|ref|YP_684830.1| - 0.0052 16.4 0.0 0.025 14.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|147921356|ref|YP_684830.1| - 0.018 15.1 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|147921356|ref|YP_684830.1| - 0.035 13.8 0.0 0.1 12.4 0.0 1.8 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|147921356|ref|YP_684830.1| - 0.059 13.0 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 HTH domain HTH_45 PF14947.1 gi|147921356|ref|YP_684830.1| - 0.064 13.0 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|147921356|ref|YP_684830.1| - 0.073 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|147921356|ref|YP_684830.1| - 0.082 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FaeA PF04703.7 gi|147921356|ref|YP_684830.1| - 0.085 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_27 PF13463.1 gi|147921356|ref|YP_684830.1| - 0.089 13.1 0.0 0.19 12.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain CheD PF03975.8 gi|147921357|ref|YP_684829.1| - 1.8e-28 98.6 0.1 2.2e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|147921358|ref|YP_684828.1| - 5.8e-20 70.7 1.3 5.8e-10 38.7 0.1 2.6 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|147921358|ref|YP_684828.1| - 6.2e-06 25.9 0.3 0.0056 16.5 0.0 2.8 2 1 0 3 3 3 2 Chemotaxis phosphatase CheX PAS_5 PF07310.8 gi|147921358|ref|YP_684828.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 PAS domain Hpt PF01627.18 gi|147921359|ref|YP_684827.1| - 6.1e-25 87.0 0.2 1.5e-24 85.7 0.2 1.7 1 0 0 1 1 1 1 Hpt domain CheW PF01584.14 gi|147921359|ref|YP_684827.1| - 7.5e-25 87.0 3.0 7.6e-25 86.9 0.9 1.9 2 0 0 2 2 2 1 CheW-like domain P2 PF07194.6 gi|147921359|ref|YP_684827.1| - 2.6e-23 81.6 3.5 4.1e-23 81.0 1.1 2.4 2 0 0 2 2 2 1 P2 response regulator binding domain HATPase_c PF02518.21 gi|147921359|ref|YP_684827.1| - 9.6e-21 73.5 0.4 3e-20 71.9 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.9 gi|147921359|ref|YP_684827.1| - 1.1e-15 57.6 2.1 1.8e-15 57.0 0.6 2.1 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|147921359|ref|YP_684827.1| - 0.0092 15.6 0.6 0.033 13.8 0.4 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheB_methylest PF01339.12 gi|147921360|ref|YP_684826.1| - 1.4e-66 223.4 1.5 3.9e-66 221.9 0.2 2.0 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|147921360|ref|YP_684826.1| - 1.4e-23 82.9 0.7 3.3e-23 81.8 0.2 1.8 2 0 0 2 2 2 1 Response regulator receiver domain Response_reg PF00072.19 gi|147921361|ref|YP_684825.1| - 5e-31 107.0 0.2 5.5e-31 106.8 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain LEDGF PF11467.3 gi|147921361|ref|YP_684825.1| - 0.017 14.7 0.0 0.023 14.4 0.0 1.3 1 1 0 1 1 1 0 Lens epithelium-derived growth factor (LEDGF) CheF-arch PF04283.7 gi|147921362|ref|YP_684824.1| - 8.7e-24 83.9 0.0 1.8e-23 82.9 0.0 1.5 1 1 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea GerE PF00196.14 gi|147921362|ref|YP_684824.1| - 0.0093 15.2 0.0 0.022 14.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|147921363|ref|YP_684823.1| - 2e-14 52.9 0.3 3.1e-14 52.3 0.1 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147921363|ref|YP_684823.1| - 6.5e-12 45.0 0.0 8.7e-12 44.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|147921363|ref|YP_684823.1| - 1e-08 34.3 0.3 1.7e-08 33.7 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|147921363|ref|YP_684823.1| - 5.8e-08 32.1 0.1 1.2e-07 31.2 0.1 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|147921363|ref|YP_684823.1| - 1e-07 31.5 0.1 3.1e-07 29.9 0.0 1.7 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|147921363|ref|YP_684823.1| - 2.8e-07 30.5 0.0 3.4e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|147921363|ref|YP_684823.1| - 4.9e-07 29.3 0.0 9.1e-07 28.4 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|147921363|ref|YP_684823.1| - 5.2e-07 29.2 0.0 3.1e-06 26.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|147921363|ref|YP_684823.1| - 8.1e-07 28.9 0.0 2.6e-06 27.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|147921363|ref|YP_684823.1| - 3.3e-06 26.9 0.0 6.9e-06 25.9 0.0 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|147921363|ref|YP_684823.1| - 5.9e-06 25.8 0.0 8.2e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|147921363|ref|YP_684823.1| - 4.9e-05 23.0 0.0 6.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|147921363|ref|YP_684823.1| - 0.00015 21.4 0.1 0.00032 20.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family PaaX PF07848.7 gi|147921363|ref|YP_684823.1| - 0.00024 21.0 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 PaaX-like protein HTH_10 PF04967.7 gi|147921363|ref|YP_684823.1| - 0.00037 20.0 0.0 0.00071 19.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.1 gi|147921363|ref|YP_684823.1| - 0.0009 18.8 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|147921363|ref|YP_684823.1| - 0.0011 19.2 0.0 0.0018 18.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|147921363|ref|YP_684823.1| - 0.0015 17.9 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|147921363|ref|YP_684823.1| - 0.007 15.7 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|147921363|ref|YP_684823.1| - 0.01 15.3 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_DeoR PF08220.7 gi|147921363|ref|YP_684823.1| - 0.012 15.0 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Arg_repressor PF01316.16 gi|147921363|ref|YP_684823.1| - 0.017 14.6 0.0 0.038 13.5 0.0 1.6 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_26 PF13443.1 gi|147921363|ref|YP_684823.1| - 0.031 14.4 0.0 0.053 13.7 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain RP-C PF03428.8 gi|147921363|ref|YP_684823.1| - 0.033 13.6 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain LexA_DNA_bind PF01726.11 gi|147921363|ref|YP_684823.1| - 0.04 13.4 0.0 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 LexA DNA binding domain HTH_17 PF12728.2 gi|147921363|ref|YP_684823.1| - 0.042 14.0 0.0 0.068 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|147921363|ref|YP_684823.1| - 0.043 13.8 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor RepL PF05732.6 gi|147921363|ref|YP_684823.1| - 0.045 12.9 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.1 gi|147921363|ref|YP_684823.1| - 0.046 13.8 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|147921363|ref|YP_684823.1| - 0.049 13.2 0.0 0.077 12.6 0.0 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix TFIIE_alpha PF02002.12 gi|147921363|ref|YP_684823.1| - 0.062 12.8 0.1 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_41 PF14502.1 gi|147921363|ref|YP_684823.1| - 0.078 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|147921363|ref|YP_684823.1| - 0.088 13.2 0.0 0.13 12.7 0.0 1.4 1 1 0 1 1 1 0 Replication protein A C terminal TetR_N PF00440.18 gi|147921363|ref|YP_684823.1| - 0.097 12.3 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_37 PF13744.1 gi|147921363|ref|YP_684823.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4_7 PF12838.2 gi|147921364|ref|YP_684822.1| - 4.6e-10 39.7 3.7 3.1e-05 24.2 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147921364|ref|YP_684822.1| - 2.1e-08 34.0 2.3 0.00012 22.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147921364|ref|YP_684822.1| - 5.4e-08 32.1 12.8 6.1e-07 28.7 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147921364|ref|YP_684822.1| - 8.6e-08 31.9 5.0 0.00014 21.6 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147921364|ref|YP_684822.1| - 2e-07 30.5 11.9 2.7e-05 23.8 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|147921364|ref|YP_684822.1| - 2.8e-07 30.1 14.7 6.2e-05 22.6 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|147921364|ref|YP_684822.1| - 5.8e-07 29.6 24.8 3e-05 24.1 8.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147921364|ref|YP_684822.1| - 1.4e-06 27.9 12.1 0.00016 21.4 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147921364|ref|YP_684822.1| - 3.5e-05 24.1 9.9 0.0037 17.6 0.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147921364|ref|YP_684822.1| - 4.2e-05 23.8 8.0 0.015 15.6 1.8 2.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921364|ref|YP_684822.1| - 0.00013 22.5 10.1 0.014 16.1 1.8 2.4 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|147921364|ref|YP_684822.1| - 0.00021 21.5 19.1 0.026 15.0 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|147921364|ref|YP_684822.1| - 0.00038 20.5 12.9 0.00098 19.2 2.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain DUF678 PF05077.7 gi|147921364|ref|YP_684822.1| - 0.076 13.0 3.5 0.31 11.0 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_13 PF13370.1 gi|147921364|ref|YP_684822.1| - 0.12 12.8 13.5 0.34 11.3 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|147921364|ref|YP_684822.1| - 0.31 11.6 9.7 0.38 11.3 0.9 2.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fasciclin PF02469.17 gi|147921366|ref|YP_684820.1| - 6.8e-17 61.6 0.0 9.1e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain Fer4 PF00037.22 gi|147921367|ref|YP_684819.1| - 9.3e-11 40.8 17.1 8.4e-09 34.6 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147921367|ref|YP_684819.1| - 2e-09 37.6 19.8 1.6e-06 28.4 6.1 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921367|ref|YP_684819.1| - 2.3e-08 33.5 12.6 1.6e-07 30.8 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147921367|ref|YP_684819.1| - 2.9e-08 33.3 5.9 9.1e-08 31.7 4.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921367|ref|YP_684819.1| - 8.1e-08 32.4 6.6 1.8e-07 31.2 4.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147921367|ref|YP_684819.1| - 1.5e-05 24.7 9.5 3.6e-05 23.5 6.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147921367|ref|YP_684819.1| - 2.3e-05 24.0 4.4 2.3e-05 24.0 3.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147921367|ref|YP_684819.1| - 4.9e-05 23.9 8.7 0.011 16.5 1.7 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|147921367|ref|YP_684819.1| - 0.00016 21.9 3.4 0.0085 16.4 0.4 2.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|147921367|ref|YP_684819.1| - 0.00025 21.5 9.7 0.0069 16.9 6.7 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|147921367|ref|YP_684819.1| - 0.031 14.3 9.6 0.082 12.9 2.9 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147921367|ref|YP_684819.1| - 0.033 14.5 4.5 0.033 14.5 3.1 3.0 4 0 0 4 4 2 0 4Fe-4S binding domain YcbB PF08664.5 gi|147921367|ref|YP_684819.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 YcbB domain Fer4_18 PF13746.1 gi|147921367|ref|YP_684819.1| - 1.6 9.2 10.6 0.16 12.4 1.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|147921367|ref|YP_684819.1| - 3.8 7.3 7.4 4.6 7.1 0.8 2.8 2 1 0 2 2 2 0 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|147921367|ref|YP_684819.1| - 7.4 7.0 10.7 1.1 9.6 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain MMPL PF03176.10 gi|147921368|ref|YP_684818.1| - 9.2e-100 333.5 21.8 9.7e-52 175.7 3.5 3.5 3 0 0 3 3 3 3 MMPL family ACR_tran PF00873.14 gi|147921368|ref|YP_684818.1| - 2.8e-05 21.7 15.9 2.8e-05 21.7 11.0 2.4 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family MarR PF01047.17 gi|147921369|ref|YP_684817.1| - 5.6e-14 51.5 0.5 1.8e-13 49.9 0.1 2.0 2 1 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|147921369|ref|YP_684817.1| - 1.2e-08 34.4 0.0 1.9e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|147921369|ref|YP_684817.1| - 1.2e-08 35.0 0.2 2e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|147921369|ref|YP_684817.1| - 0.00012 21.9 0.1 0.00021 21.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|147921369|ref|YP_684817.1| - 0.00031 20.4 0.0 0.00072 19.3 0.0 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|147921369|ref|YP_684817.1| - 0.00034 19.9 0.0 0.00071 18.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|147921369|ref|YP_684817.1| - 0.001 18.9 0.1 0.0018 18.1 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|147921369|ref|YP_684817.1| - 0.0011 18.5 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|147921369|ref|YP_684817.1| - 0.0014 18.4 0.0 0.0022 17.7 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC FeoC PF09012.5 gi|147921369|ref|YP_684817.1| - 0.002 17.8 0.2 0.0031 17.1 0.1 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator GntR PF00392.16 gi|147921369|ref|YP_684817.1| - 0.0027 17.0 0.0 0.0057 16.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PadR PF03551.9 gi|147921369|ref|YP_684817.1| - 0.0037 17.0 0.1 0.008 15.9 0.0 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.11 gi|147921369|ref|YP_684817.1| - 0.0045 16.5 0.0 0.0095 15.4 0.0 1.6 1 1 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.1 gi|147921369|ref|YP_684817.1| - 0.0047 16.7 0.0 0.009 15.8 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|147921369|ref|YP_684817.1| - 0.012 15.6 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HxlR PF01638.12 gi|147921369|ref|YP_684817.1| - 0.023 14.3 0.1 0.047 13.3 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_15 PF12324.3 gi|147921369|ref|YP_684817.1| - 0.027 14.1 0.1 0.048 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_36 PF13730.1 gi|147921369|ref|YP_684817.1| - 0.043 13.9 0.1 2 8.6 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain Replic_Relax PF13814.1 gi|147921369|ref|YP_684817.1| - 0.071 12.9 0.0 0.096 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Ribosomal_S19e PF01090.14 gi|147921369|ref|YP_684817.1| - 0.074 12.4 0.1 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein S19e STT3 PF02516.9 gi|147921370|ref|YP_684816.1| - 2e-34 119.3 36.9 1e-33 117.0 25.6 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PQQ_3 PF13570.1 gi|147921371|ref|YP_684815.1| - 6.8e-54 178.7 37.5 2.2e-09 37.2 0.9 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|147921371|ref|YP_684815.1| - 6.4e-51 173.1 10.9 3.7e-21 75.6 0.2 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|147921371|ref|YP_684815.1| - 1.3e-39 131.7 26.4 4.3e-09 35.4 0.0 8.0 8 0 0 8 8 8 7 PQQ enzyme repeat SUKH-4 PF14435.1 gi|147921371|ref|YP_684815.1| - 0.04 13.6 0.7 2 8.0 0.2 3.0 1 1 1 2 2 2 0 SUKH-4 immunity protein Kelch_6 PF13964.1 gi|147921371|ref|YP_684815.1| - 0.54 10.5 3.7 6.1 7.1 0.0 3.9 4 0 0 4 4 4 0 Kelch motif NTP_transferase PF00483.18 gi|147921372|ref|YP_684814.1| - 4.8e-33 114.4 0.0 5.7e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|147921372|ref|YP_684814.1| - 2.1e-11 44.1 0.0 3.2e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|147921372|ref|YP_684814.1| - 0.00015 21.3 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.19 gi|147921372|ref|YP_684814.1| - 0.002 17.5 7.3 0.17 11.4 0.5 4.2 2 1 2 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Epimerase PF01370.16 gi|147921373|ref|YP_684813.1| - 4.4e-48 163.7 0.0 5.5e-48 163.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|147921373|ref|YP_684813.1| - 3.7e-10 39.1 0.0 1.4e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|147921373|ref|YP_684813.1| - 2.3e-09 36.3 0.0 3.7e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|147921373|ref|YP_684813.1| - 3.3e-09 36.0 0.0 4.9e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|147921373|ref|YP_684813.1| - 1.2e-08 34.1 0.0 0.002 17.1 0.0 2.6 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|147921373|ref|YP_684813.1| - 0.0012 18.8 0.0 0.0029 17.5 0.0 1.7 1 1 0 1 1 1 1 short chain dehydrogenase PMT_2 PF13231.1 gi|147921374|ref|YP_684812.1| - 1.8e-20 73.4 8.6 1.8e-20 73.4 6.0 3.5 4 1 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|147921374|ref|YP_684812.1| - 3.5e-11 42.9 17.6 3.5e-11 42.9 12.2 3.2 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|147921374|ref|YP_684812.1| - 0.00015 20.9 32.6 0.00047 19.2 20.6 2.7 1 1 1 2 2 2 1 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.3 gi|147921374|ref|YP_684812.1| - 0.0042 16.5 6.9 0.0042 16.5 4.7 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2723) Glycos_transf_1 PF00534.15 gi|147921375|ref|YP_684811.1| - 5e-36 123.6 0.0 9.6e-36 122.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921375|ref|YP_684811.1| - 8.4e-15 55.1 0.0 1.4e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921375|ref|YP_684811.1| - 4.7e-07 29.6 0.0 7.4e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|147921375|ref|YP_684811.1| - 4.7e-06 26.7 0.0 9.1e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147921375|ref|YP_684811.1| - 6.8e-05 23.0 0.0 0.00021 21.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Epimerase_2 PF02350.14 gi|147921375|ref|YP_684811.1| - 0.022 13.5 0.0 0.12 11.0 0.0 2.0 1 1 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Polysacc_synt PF01943.12 gi|147921376|ref|YP_684810.1| - 6.7e-47 160.0 40.1 6.7e-47 160.0 27.8 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|147921376|ref|YP_684810.1| - 1.2e-18 67.3 27.4 1.2e-18 67.3 19.0 3.9 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|147921376|ref|YP_684810.1| - 1.2e-14 54.3 34.1 1.2e-14 54.3 23.6 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|147921376|ref|YP_684810.1| - 1.2e-09 37.0 50.6 1.2e-09 37.0 35.1 1.9 1 1 0 2 2 2 1 MviN-like protein Glycos_transf_1 PF00534.15 gi|147921377|ref|YP_684809.1| - 2.5e-23 82.3 0.0 4.9e-23 81.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921377|ref|YP_684809.1| - 2.2e-13 50.5 0.0 8.1e-13 48.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|147921377|ref|YP_684809.1| - 4e-09 36.6 0.0 1.6e-08 34.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_tranf_2_3 PF13641.1 gi|147921378|ref|YP_684808.1| - 9.7e-29 100.7 0.0 1.2e-28 100.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|147921378|ref|YP_684808.1| - 7e-25 87.6 0.0 1e-24 87.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|147921378|ref|YP_684808.1| - 7.5e-13 48.6 0.0 1e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|147921378|ref|YP_684808.1| - 3.9e-09 36.0 0.0 6.5e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|147921378|ref|YP_684808.1| - 5.2e-06 25.8 0.0 1.7e-05 24.2 0.0 1.7 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|147921378|ref|YP_684808.1| - 0.00063 20.0 0.0 0.0019 18.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|147921379|ref|YP_684807.1| - 6.2e-21 74.5 0.0 1.6e-20 73.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921379|ref|YP_684807.1| - 3.1e-14 53.2 0.0 5.6e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147921379|ref|YP_684807.1| - 8e-07 29.3 0.3 3e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|147921379|ref|YP_684807.1| - 0.0024 17.6 0.0 0.0056 16.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Catalase-rel PF06628.7 gi|147921379|ref|YP_684807.1| - 0.0031 17.3 0.0 0.056 13.3 0.0 2.6 2 1 0 2 2 2 1 Catalase-related immune-responsive Glycos_transf_1 PF00534.15 gi|147921380|ref|YP_684806.1| - 1.5e-31 109.0 0.0 2.5e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921380|ref|YP_684806.1| - 5.4e-20 71.9 0.1 2.2e-19 69.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147921380|ref|YP_684806.1| - 1.5e-06 28.4 0.1 4.8e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|147921380|ref|YP_684806.1| - 4.9e-05 23.1 0.0 7.5e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|147921380|ref|YP_684806.1| - 0.011 15.9 0.0 0.031 14.5 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|147921381|ref|YP_684805.1| - 1.3e-44 151.6 0.0 1.8e-44 151.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|147921381|ref|YP_684805.1| - 1.9e-24 86.3 0.0 6.2e-24 84.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|147921381|ref|YP_684805.1| - 3.2e-13 49.7 0.0 6.6e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147921381|ref|YP_684805.1| - 3.9e-09 36.8 0.2 8.1e-09 35.8 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|147921381|ref|YP_684805.1| - 9.9e-07 28.6 0.0 2.6e-06 27.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|147921381|ref|YP_684805.1| - 0.0042 16.9 0.0 0.0082 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|147921382|ref|YP_684804.1| - 1.1e-29 103.6 0.4 2.3e-29 102.6 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|147921382|ref|YP_684804.1| - 4.9e-27 94.4 0.0 9.1e-27 93.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921382|ref|YP_684804.1| - 2.3e-25 89.3 0.0 7.2e-25 87.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|147921382|ref|YP_684804.1| - 2e-11 44.1 0.0 6.1e-11 42.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|147921382|ref|YP_684804.1| - 1.3e-08 34.7 0.0 2.1e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|147921382|ref|YP_684804.1| - 0.00013 21.5 0.4 0.27 10.7 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glycogen_syn PF05693.8 gi|147921382|ref|YP_684804.1| - 0.072 11.3 0.0 0.11 10.7 0.0 1.2 1 0 0 1 1 1 0 Glycogen synthase Glycos_transf_1 PF00534.15 gi|147921383|ref|YP_684803.1| - 1e-20 73.8 0.0 1.6e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|147921383|ref|YP_684803.1| - 3.1e-11 43.6 0.0 8.6e-11 42.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|147921383|ref|YP_684803.1| - 1.3e-10 41.4 0.0 2.8e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|147921383|ref|YP_684803.1| - 0.0081 15.8 0.2 0.027 14.2 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.16 gi|147921383|ref|YP_684803.1| - 0.013 14.0 0.0 0.039 12.4 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase family 20 STT3 PF02516.9 gi|147921384|ref|YP_684802.1| - 6.7e-28 97.9 39.8 1.3e-25 90.3 25.2 2.5 2 1 0 2 2 2 2 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|147921384|ref|YP_684802.1| - 2.5e-05 24.2 2.6 2.5e-05 24.2 1.8 4.5 3 1 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|147921385|ref|YP_684801.1| - 3.8e-30 105.2 51.1 1.8e-29 103.0 35.3 2.0 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT_2 PF13231.1 gi|147921385|ref|YP_684801.1| - 2.9e-05 24.0 3.0 2.9e-05 24.0 2.1 5.3 6 0 0 6 6 6 3 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4064 PF13273.1 gi|147921385|ref|YP_684801.1| - 1.7 8.7 11.6 1.1 9.4 0.8 4.3 3 1 2 5 5 5 0 Protein of unknown function (DUF4064) Glycos_transf_2 PF00535.21 gi|147921386|ref|YP_684800.1| - 1.5e-20 73.5 0.0 2.1e-20 73.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|147921386|ref|YP_684800.1| - 3.5e-11 43.3 0.0 4.6e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|147921386|ref|YP_684800.1| - 4.5e-05 23.6 0.0 7.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|147921386|ref|YP_684800.1| - 0.091 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain HemY_N PF07219.8 gi|147921386|ref|YP_684800.1| - 6.1 6.4 5.7 30 4.2 1.6 2.4 1 1 1 2 2 2 0 HemY protein N-terminus CarboxypepD_reg PF13620.1 gi|147921387|ref|YP_684799.1| - 3.5e-14 52.6 0.9 3.5e-14 52.6 0.6 2.3 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921387|ref|YP_684799.1| - 1.1e-08 34.9 2.0 1.4e-08 34.6 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147921387|ref|YP_684799.1| - 1.3e-06 28.0 2.7 1.4e-06 27.9 0.4 2.1 2 0 0 2 2 2 1 Cna protein B-type domain fn3_3 PF14686.1 gi|147921387|ref|YP_684799.1| - 0.00035 20.6 0.1 0.00071 19.6 0.1 1.5 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II DUF3823 PF12866.2 gi|147921387|ref|YP_684799.1| - 0.015 14.7 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3823) Herpes_U34 PF04541.8 gi|147921387|ref|YP_684799.1| - 0.058 12.2 0.0 0.1 11.4 0.0 1.4 1 0 0 1 1 1 0 Herpesvirus virion protein U34 Ycf9 PF01737.12 gi|147921387|ref|YP_684799.1| - 0.076 12.4 0.2 0.16 11.4 0.2 1.5 1 0 0 1 1 1 0 YCF9 DUF1180 PF06679.7 gi|147921387|ref|YP_684799.1| - 0.38 10.6 18.5 2.9 7.7 0.2 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1180) HMGL-like PF00682.14 gi|147921388|ref|YP_684798.1| - 8.7e-71 238.3 0.6 1.5e-70 237.5 0.4 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|147921388|ref|YP_684798.1| - 7.7e-34 116.3 0.2 1.6e-33 115.3 0.1 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain TPP_enzyme_N PF02776.13 gi|147921389|ref|YP_684797.1| - 1.5e-60 203.5 0.2 2.6e-60 202.8 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|147921389|ref|YP_684797.1| - 6.3e-51 171.7 0.1 1.4e-50 170.6 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|147921389|ref|YP_684797.1| - 8.5e-50 168.2 1.2 7.9e-49 165.1 0.1 2.7 2 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Dala_Dala_lig_C PF07478.8 gi|147921389|ref|YP_684797.1| - 0.0025 17.2 0.0 0.005 16.2 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus POR_N PF01855.14 gi|147921389|ref|YP_684797.1| - 0.0036 16.8 0.1 0.0064 16.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ALS_ss_C PF10369.4 gi|147921390|ref|YP_684796.1| - 3.1e-34 116.5 6.2 2.4e-33 113.6 1.2 2.2 2 0 0 2 2 2 2 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|147921390|ref|YP_684796.1| - 3.1e-19 68.5 0.4 8.3e-19 67.1 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|147921390|ref|YP_684796.1| - 2.1e-15 55.8 2.8 3.7e-15 55.0 0.1 2.3 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|147921390|ref|YP_684796.1| - 0.00043 20.5 0.6 0.00043 20.5 0.4 2.2 2 1 0 2 2 2 1 ACT domain NIL PF09383.5 gi|147921390|ref|YP_684796.1| - 0.058 12.9 0.0 11 5.6 0.0 2.5 2 0 0 2 2 2 0 NIL domain GyrI-like PF06445.10 gi|147921391|ref|YP_684795.1| - 5.4e-19 68.7 0.0 2.3e-18 66.6 0.0 1.9 1 1 0 1 1 1 1 GyrI-like small molecule binding domain MerR_1 PF13411.1 gi|147921391|ref|YP_684795.1| - 3.4e-14 52.3 0.2 6.8e-14 51.3 0.0 1.6 2 0 0 2 2 2 1 MerR HTH family regulatory protein MerR PF00376.18 gi|147921391|ref|YP_684795.1| - 3.2e-09 36.1 0.0 7.1e-09 35.0 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein Cass2 PF14526.1 gi|147921391|ref|YP_684795.1| - 6.2e-07 29.5 0.1 2.3e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 Integron-associated effector binding protein MerR-DNA-bind PF09278.6 gi|147921391|ref|YP_684795.1| - 9.4e-05 22.7 0.2 0.00017 21.8 0.1 1.4 1 0 0 1 1 1 1 MerR, DNA binding HD_assoc PF13286.1 gi|147921392|ref|YP_684794.1| - 4.5e-12 46.0 1.9 1e-11 44.9 1.3 1.6 1 1 0 1 1 1 1 Phosphohydrolase-associated domain HD PF01966.17 gi|147921392|ref|YP_684794.1| - 1.9e-10 40.7 0.3 4.2e-10 39.6 0.2 1.5 1 0 0 1 1 1 1 HD domain Hormone_1 PF00103.15 gi|147921392|ref|YP_684794.1| - 0.044 13.1 0.4 0.07 12.4 0.3 1.2 1 0 0 1 1 1 0 Somatotropin hormone family Baculo_gp41 PF04700.7 gi|147921392|ref|YP_684794.1| - 0.087 12.2 4.1 0.27 10.6 0.4 2.6 2 1 1 3 3 3 0 Structural glycoprotein p40/gp41 conserved region Methyltransf_23 PF13489.1 gi|147921393|ref|YP_684793.1| - 1.6e-18 66.9 0.0 2.2e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147921393|ref|YP_684793.1| - 2e-16 59.9 0.0 2.3e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147921393|ref|YP_684793.1| - 2.6e-15 56.6 0.0 4e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147921393|ref|YP_684793.1| - 6.5e-15 55.3 0.0 1e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921393|ref|YP_684793.1| - 4.3e-11 43.3 0.0 7.1e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147921393|ref|YP_684793.1| - 1.8e-10 40.3 0.0 1.3e-08 34.2 0.0 2.1 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|147921393|ref|YP_684793.1| - 2.5e-09 37.3 0.0 5.1e-09 36.4 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.9 gi|147921393|ref|YP_684793.1| - 1.2e-07 31.2 0.0 1.7e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|147921393|ref|YP_684793.1| - 6.3e-07 28.7 0.0 7.6e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|147921393|ref|YP_684793.1| - 1.4e-05 24.2 0.0 1.9e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|147921393|ref|YP_684793.1| - 2.5e-05 23.9 0.0 3.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|147921393|ref|YP_684793.1| - 0.0024 17.8 0.0 0.0045 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|147921393|ref|YP_684793.1| - 0.0031 16.9 0.0 0.0048 16.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|147921393|ref|YP_684793.1| - 0.0039 16.3 0.0 0.005 16.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|147921393|ref|YP_684793.1| - 0.011 14.7 0.0 0.014 14.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|147921393|ref|YP_684793.1| - 0.018 14.7 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain GidB PF02527.10 gi|147921393|ref|YP_684793.1| - 0.034 13.2 0.0 0.046 12.8 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G ABC_tran PF00005.22 gi|147921394|ref|YP_684792.1| - 1.1e-51 174.7 0.0 7.6e-27 94.2 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|147921394|ref|YP_684792.1| - 1.8e-11 44.5 0.2 0.12 12.2 0.0 4.3 3 1 0 4 4 4 3 AAA domain AAA_16 PF13191.1 gi|147921394|ref|YP_684792.1| - 1e-07 32.1 0.2 0.00069 19.6 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|147921394|ref|YP_684792.1| - 1.3e-07 30.9 0.1 0.014 14.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|147921394|ref|YP_684792.1| - 2.5e-05 23.7 1.0 0.19 11.2 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|147921394|ref|YP_684792.1| - 0.00011 21.4 5.7 0.73 9.0 0.0 4.0 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|147921394|ref|YP_684792.1| - 0.00014 21.7 0.1 0.65 9.9 0.0 3.4 3 0 0 3 3 3 1 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|147921394|ref|YP_684792.1| - 0.00016 21.2 0.2 0.078 12.4 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain FtsK_SpoIIIE PF01580.13 gi|147921394|ref|YP_684792.1| - 0.0002 20.8 0.2 0.84 9.0 0.0 2.7 3 0 0 3 3 2 2 FtsK/SpoIIIE family SbcCD_C PF13558.1 gi|147921394|ref|YP_684792.1| - 0.00023 20.9 0.0 1 9.3 0.0 3.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|147921394|ref|YP_684792.1| - 0.00029 20.9 1.0 0.27 11.3 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|147921394|ref|YP_684792.1| - 0.00058 19.0 0.9 1.8 7.5 0.0 3.5 4 0 0 4 4 4 1 AAA ATPase domain PduV-EutP PF10662.4 gi|147921394|ref|YP_684792.1| - 0.00089 18.7 0.0 0.83 9.1 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation PIF1 PF05970.9 gi|147921394|ref|YP_684792.1| - 0.0013 17.7 0.1 3 6.6 0.0 3.2 3 0 0 3 3 3 1 PIF1-like helicase AAA_17 PF13207.1 gi|147921394|ref|YP_684792.1| - 0.0015 19.3 3.3 0.95 10.2 0.1 2.7 2 0 0 2 2 2 2 AAA domain Miro PF08477.8 gi|147921394|ref|YP_684792.1| - 0.0015 18.9 0.1 1 9.8 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein AAA_30 PF13604.1 gi|147921394|ref|YP_684792.1| - 0.0028 17.2 0.1 2.5 7.6 0.1 2.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|147921394|ref|YP_684792.1| - 0.0037 16.6 0.1 2.6 7.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain UPF0079 PF02367.12 gi|147921394|ref|YP_684792.1| - 0.0037 16.8 0.7 0.49 10.0 0.1 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|147921394|ref|YP_684792.1| - 0.0051 16.2 4.3 1.5 8.1 0.0 3.3 3 1 0 3 3 3 1 AAA-like domain AAA_23 PF13476.1 gi|147921394|ref|YP_684792.1| - 0.0058 16.9 3.8 0.44 10.8 0.6 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|147921394|ref|YP_684792.1| - 0.0059 16.9 0.8 1.1 9.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|147921394|ref|YP_684792.1| - 0.0063 15.4 1.6 1.2 7.9 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain PRK PF00485.13 gi|147921394|ref|YP_684792.1| - 0.0067 16.0 0.1 1.2 8.6 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family MobB PF03205.9 gi|147921394|ref|YP_684792.1| - 0.01 15.5 2.0 1.4 8.5 0.1 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|147921394|ref|YP_684792.1| - 0.012 15.3 0.4 1.7 8.2 0.0 2.9 3 0 0 3 3 3 0 NACHT domain AAA_28 PF13521.1 gi|147921394|ref|YP_684792.1| - 0.022 14.7 0.5 14 5.5 0.0 3.3 3 0 0 3 3 3 0 AAA domain KAP_NTPase PF07693.9 gi|147921394|ref|YP_684792.1| - 0.022 13.7 0.0 0.82 8.6 0.0 2.3 2 1 0 2 2 2 0 KAP family P-loop domain DUF87 PF01935.12 gi|147921394|ref|YP_684792.1| - 0.035 13.9 4.4 1.4 8.6 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function DUF87 T2SE PF00437.15 gi|147921394|ref|YP_684792.1| - 0.049 12.5 0.1 0.97 8.2 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein PhoH PF02562.11 gi|147921394|ref|YP_684792.1| - 0.05 12.8 0.3 16 4.6 0.0 3.1 3 0 0 3 3 3 0 PhoH-like protein cobW PF02492.14 gi|147921394|ref|YP_684792.1| - 0.056 12.8 3.9 4.8 6.5 0.0 3.4 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain DZR PF12773.2 gi|147921394|ref|YP_684792.1| - 0.096 12.5 0.3 0.18 11.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Arch_ATPase PF01637.13 gi|147921394|ref|YP_684792.1| - 0.099 12.3 0.2 9.8 5.7 0.0 2.8 3 0 0 3 3 3 0 Archaeal ATPase Carla_C4 PF01623.12 gi|147921394|ref|YP_684792.1| - 0.13 12.0 1.9 0.39 10.4 1.3 1.8 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein Zeta_toxin PF06414.7 gi|147921394|ref|YP_684792.1| - 0.15 11.1 0.1 1 8.4 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin Pox_A32 PF04665.7 gi|147921394|ref|YP_684792.1| - 0.15 11.3 1.8 1.7 7.8 0.0 2.6 3 0 0 3 3 3 0 Poxvirus A32 protein AAA_24 PF13479.1 gi|147921394|ref|YP_684792.1| - 0.26 10.8 1.9 13 5.3 0.2 2.5 2 0 0 2 2 2 0 AAA domain zf-ribbon_3 PF13248.1 gi|147921394|ref|YP_684792.1| - 0.3 10.3 2.8 0.54 9.5 2.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain AAA PF00004.24 gi|147921394|ref|YP_684792.1| - 0.32 11.1 2.8 6 7.0 0.3 3.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|147921394|ref|YP_684792.1| - 1.2 8.2 4.8 6 5.9 0.1 2.9 3 0 0 3 3 3 0 KaiC ParA PF10609.4 gi|147921395|ref|YP_684791.1| - 1.4e-33 114.6 0.1 2.2e-33 113.9 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|147921395|ref|YP_684791.1| - 2.2e-22 79.4 0.1 2.9e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|147921395|ref|YP_684791.1| - 2.4e-08 33.4 0.1 4.1e-07 29.3 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|147921395|ref|YP_684791.1| - 2.6e-06 26.7 0.0 3.8e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|147921395|ref|YP_684791.1| - 7.1e-06 25.7 0.3 0.07 12.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|147921395|ref|YP_684791.1| - 8.7e-06 25.7 0.1 3.6e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|147921395|ref|YP_684791.1| - 0.00074 18.3 0.4 0.0012 17.6 0.2 1.3 1 0 0 1 1 1 1 ArgK protein AAA_25 PF13481.1 gi|147921395|ref|YP_684791.1| - 0.0011 18.4 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|147921395|ref|YP_684791.1| - 0.0012 18.1 0.1 0.005 16.0 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|147921395|ref|YP_684791.1| - 0.0035 17.0 0.3 0.027 14.1 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|147921395|ref|YP_684791.1| - 0.01 15.3 0.1 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|147921395|ref|YP_684791.1| - 0.013 15.2 2.0 0.025 14.3 0.5 2.0 2 0 0 2 2 2 0 Part of AAA domain VirC1 PF07015.6 gi|147921395|ref|YP_684791.1| - 0.017 14.2 0.0 0.033 13.2 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein SRP54 PF00448.17 gi|147921395|ref|YP_684791.1| - 0.018 14.5 0.0 0.026 13.9 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|147921395|ref|YP_684791.1| - 0.019 14.7 0.8 0.068 12.8 0.1 1.9 2 0 0 2 2 2 0 NTPase YhjQ PF06564.7 gi|147921395|ref|YP_684791.1| - 0.03 13.6 0.1 0.098 11.9 0.0 1.8 2 0 0 2 2 2 0 YhjQ protein Torsin PF06309.6 gi|147921395|ref|YP_684791.1| - 0.036 13.9 0.0 0.097 12.5 0.0 1.7 2 0 0 2 2 1 0 Torsin DUF258 PF03193.11 gi|147921395|ref|YP_684791.1| - 0.069 12.3 0.1 0.14 11.2 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|147921395|ref|YP_684791.1| - 0.091 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.7 gi|147921395|ref|YP_684791.1| - 0.17 11.5 0.3 0.29 10.7 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Nitro_FeMo-Co PF02579.12 gi|147921396|ref|YP_684790.1| - 9.1e-23 80.1 0.1 1.1e-22 79.9 0.1 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor PRC PF05239.11 gi|147921396|ref|YP_684790.1| - 0.23 11.3 1.1 2.8 7.8 0.0 2.5 2 1 0 3 3 3 0 PRC-barrel domain DUF134 PF02001.11 gi|147921397|ref|YP_684789.1| - 1.6e-24 85.8 0.0 2.2e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|147921397|ref|YP_684789.1| - 2.5e-05 23.6 0.0 3.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|147921397|ref|YP_684789.1| - 0.00057 19.4 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HypA PF01155.14 gi|147921397|ref|YP_684789.1| - 0.0033 17.0 3.8 0.006 16.2 2.7 1.7 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|147921397|ref|YP_684789.1| - 0.0075 16.2 3.9 0.0075 16.2 2.7 2.0 2 0 0 2 2 2 1 Zinc ribbon domain Sigma70_ECF PF07638.6 gi|147921397|ref|YP_684789.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor PhnA_Zn_Ribbon PF08274.7 gi|147921397|ref|YP_684789.1| - 0.021 14.6 4.4 0.056 13.2 0.1 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HTH_23 PF13384.1 gi|147921397|ref|YP_684789.1| - 0.06 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.7 gi|147921397|ref|YP_684789.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF4379 PF14311.1 gi|147921397|ref|YP_684789.1| - 0.32 10.8 8.4 0.67 9.8 5.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) TFIIS_C PF01096.13 gi|147921397|ref|YP_684789.1| - 0.37 10.4 4.8 7 6.3 0.2 2.6 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF1451 PF07295.6 gi|147921397|ref|YP_684789.1| - 9.3 6.0 7.7 12 5.6 3.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1451) Arginase PF00491.16 gi|147921398|ref|YP_684788.1| - 2.3e-73 246.8 0.1 2.7e-73 246.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family PAS PF00989.19 gi|147921399|ref|YP_684787.1| - 2.2e-39 133.7 0.0 5.6e-15 55.1 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|147921399|ref|YP_684787.1| - 5.2e-33 113.5 0.1 4.1e-12 46.4 0.1 4.0 3 0 0 3 3 3 3 PAS domain HisKA_2 PF07568.7 gi|147921399|ref|YP_684787.1| - 2.8e-29 100.7 1.8 4.5e-29 100.1 0.2 2.3 2 0 0 2 2 2 1 Histidine kinase GAF_3 PF13492.1 gi|147921399|ref|YP_684787.1| - 4e-25 88.3 0.0 2.3e-18 66.5 0.0 3.2 3 1 0 3 3 3 2 GAF domain PAS_3 PF08447.6 gi|147921399|ref|YP_684787.1| - 1.7e-19 69.6 0.1 3.5e-09 36.6 0.0 4.5 4 1 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|147921399|ref|YP_684787.1| - 7.4e-19 67.8 0.0 2.5e-07 30.7 0.0 3.8 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|147921399|ref|YP_684787.1| - 7.5e-17 60.5 0.1 2.9e-06 26.9 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|147921399|ref|YP_684787.1| - 4.8e-14 53.0 0.0 1.1e-05 25.9 0.0 2.8 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.21 gi|147921399|ref|YP_684787.1| - 3.4e-08 33.2 0.1 7.7e-08 32.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.21 gi|147921399|ref|YP_684787.1| - 1.4e-06 28.5 0.0 0.057 13.5 0.0 2.6 2 0 0 2 2 2 2 GAF domain HWE_HK PF07536.9 gi|147921399|ref|YP_684787.1| - 1.9e-06 28.1 0.1 6.2e-06 26.5 0.0 1.9 1 0 0 1 1 1 1 HWE histidine kinase PAS_11 PF14598.1 gi|147921399|ref|YP_684787.1| - 5.1e-06 26.4 0.0 0.015 15.2 0.0 3.3 4 0 0 4 4 3 2 PAS domain HATPase_c_2 PF13581.1 gi|147921399|ref|YP_684787.1| - 0.013 15.3 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain EMP24_GP25L PF01105.19 gi|147921399|ref|YP_684787.1| - 0.02 14.5 0.1 0.053 13.2 0.1 1.6 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD HTH_10 PF04967.7 gi|147921400|ref|YP_684786.1| - 5.4e-23 80.3 0.1 1.3e-22 79.0 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|147921400|ref|YP_684786.1| - 0.0042 16.4 0.1 0.0085 15.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|147921400|ref|YP_684786.1| - 0.005 16.4 0.3 0.013 15.1 0.2 1.8 1 1 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|147921400|ref|YP_684786.1| - 0.021 14.3 0.6 0.83 9.2 0.2 2.9 2 1 0 2 2 2 0 LexA DNA binding domain Sigma70_r4_2 PF08281.7 gi|147921400|ref|YP_684786.1| - 0.026 13.9 5.9 0.13 11.7 0.3 3.4 3 1 0 3 3 3 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|147921400|ref|YP_684786.1| - 0.046 13.3 0.0 0.14 11.8 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|147921400|ref|YP_684786.1| - 0.056 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.11 gi|147921400|ref|YP_684786.1| - 0.057 12.7 0.1 0.16 11.2 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|147921400|ref|YP_684786.1| - 0.062 13.6 0.1 0.22 11.8 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|147921400|ref|YP_684786.1| - 0.073 13.3 0.1 0.15 12.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|147921400|ref|YP_684786.1| - 0.075 12.5 0.4 0.15 11.5 0.3 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MRFAP1 PF15155.1 gi|147921400|ref|YP_684786.1| - 0.094 13.0 0.8 0.15 12.3 0.6 1.2 1 0 0 1 1 1 0 MORF4 family-associated protein1 HTH_5 PF01022.15 gi|147921400|ref|YP_684786.1| - 0.11 12.2 0.2 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family IlvN PF07991.7 gi|147921401|ref|YP_684785.1| - 4.3e-76 253.8 2.8 5.8e-76 253.4 2.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|147921401|ref|YP_684785.1| - 1.6e-56 190.2 0.1 2.3e-56 189.7 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|147921401|ref|YP_684785.1| - 1.1e-06 27.9 0.1 1.9e-06 27.1 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|147921401|ref|YP_684785.1| - 6.4e-06 26.0 0.1 1.3e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|147921401|ref|YP_684785.1| - 7.6e-06 25.8 0.1 1.4e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|147921401|ref|YP_684785.1| - 5.9e-05 23.4 0.1 0.00018 21.8 0.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent HP_OMP PF01856.12 gi|147921401|ref|YP_684785.1| - 0.015 15.0 0.1 1.1 9.0 0.0 2.4 1 1 2 3 3 3 0 Helicobacter outer membrane protein Oxidored_nitro PF00148.14 gi|147921401|ref|YP_684785.1| - 0.023 13.3 0.0 0.044 12.4 0.0 1.4 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.11 gi|147921401|ref|YP_684785.1| - 0.065 12.6 0.1 0.12 11.7 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|147921401|ref|YP_684785.1| - 0.097 12.9 0.1 0.2 11.9 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding E1-E2_ATPase PF00122.15 gi|147921402|ref|YP_684784.1| - 4.4e-54 182.9 0.3 4.4e-54 182.9 0.2 2.0 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|147921402|ref|YP_684784.1| - 1.8e-34 120.0 0.0 2.8e-34 119.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|147921402|ref|YP_684784.1| - 4.3e-31 107.8 6.4 4.3e-31 107.8 4.4 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus HAD PF12710.2 gi|147921402|ref|YP_684784.1| - 1.2e-16 61.4 0.0 2.7e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|147921402|ref|YP_684784.1| - 2.4e-10 39.7 0.0 4.7e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|147921402|ref|YP_684784.1| - 1.1e-05 25.1 1.1 0.002 17.7 0.5 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.1 gi|147921402|ref|YP_684784.1| - 0.002 18.2 0.4 0.0084 16.2 0.3 2.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain HAD_2 PF13419.1 gi|147921402|ref|YP_684784.1| - 0.17 12.0 0.0 0.49 10.5 0.0 1.7 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase TraW_N PF12477.3 gi|147921403|ref|YP_684783.1| - 0.7 9.9 3.0 1.4 8.9 2.1 1.4 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal RAB3GAP2_N PF14655.1 gi|147921403|ref|YP_684783.1| - 1 8.3 4.0 1.3 7.9 2.8 1.2 1 0 0 1 1 1 0 Rab3 GTPase-activating protein regulatory subunit N-terminus TFIIA PF03153.8 gi|147921403|ref|YP_684783.1| - 4.2 7.1 15.3 6.7 6.4 10.6 1.3 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit DUF4175 PF13779.1 gi|147921403|ref|YP_684783.1| - 6.7 4.2 22.2 8.6 3.9 15.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Arch_flagellin PF01917.11 gi|147921404|ref|YP_684781.1| - 2.3e-28 99.1 11.2 9.6e-28 97.1 7.7 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|147921405|ref|YP_684782.1| - 2.3e-28 99.1 11.2 9.6e-28 97.1 7.7 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.8 gi|147921407|ref|YP_684779.1| - 0.00084 19.1 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 Archaeal flagella protein TFIIF_alpha PF05793.7 gi|147921407|ref|YP_684779.1| - 0.0027 16.1 7.7 0.0037 15.7 5.3 1.2 1 0 0 1 1 1 1 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Arch_flagellin PF01917.11 gi|147921408|ref|YP_684778.1| - 1.3e-11 44.4 1.2 2.2e-11 43.7 0.8 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin MacB_PCD PF12704.2 gi|147921408|ref|YP_684778.1| - 0.0013 18.4 1.0 0.0014 18.2 0.7 1.1 1 0 0 1 1 1 1 MacB-like periplasmic core domain Ldh_1_N PF00056.18 gi|147921408|ref|YP_684778.1| - 0.092 12.5 0.0 0.55 10.0 0.0 2.0 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Arch_flagellin PF01917.11 gi|147921409|ref|YP_684777.1| - 1.9e-06 27.6 0.4 2.3e-06 27.3 0.3 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|147921410|ref|YP_684776.1| - 4.6e-09 36.1 2.1 1e-08 35.0 1.5 1.5 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|147921411|ref|YP_684775.1| - 1.2e-10 41.3 5.4 5.6e-10 39.1 3.7 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin CBM49 PF09478.5 gi|147921411|ref|YP_684775.1| - 0.053 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain CBM49 Arch_flagellin PF01917.11 gi|147921412|ref|YP_684774.1| - 1.9e-06 27.6 1.0 2.7e-06 27.1 0.7 1.4 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|147921414|ref|YP_684772.1| - 1.3e-08 34.7 0.0 1.7e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin KaiC PF06745.8 gi|147921415|ref|YP_684771.1| - 1.9e-22 79.4 0.3 2.2e-22 79.2 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|147921415|ref|YP_684771.1| - 4.1e-07 29.6 0.1 4.5e-06 26.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|147921415|ref|YP_684771.1| - 0.0019 17.0 0.2 0.041 12.7 0.0 2.1 1 1 0 2 2 2 1 PAXNEB protein DUF835 PF05763.7 gi|147921415|ref|YP_684771.1| - 0.0048 16.4 0.1 0.0084 15.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Rad51 PF08423.6 gi|147921415|ref|YP_684771.1| - 0.027 13.3 0.1 0.1 11.5 0.0 1.8 2 0 0 2 2 2 0 Rad51 AAA_15 PF13175.1 gi|147921415|ref|YP_684771.1| - 0.028 13.4 0.1 0.051 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.1 gi|147921415|ref|YP_684771.1| - 0.14 12.4 0.5 0.2 11.9 0.3 1.5 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|147921416|ref|YP_684770.1| - 2.4e-48 164.4 0.0 3.2e-48 164.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|147921416|ref|YP_684770.1| - 0.00045 19.7 0.0 0.00096 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|147921416|ref|YP_684770.1| - 0.0028 17.9 0.0 0.0077 16.5 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.1 gi|147921416|ref|YP_684770.1| - 0.005 16.9 0.0 0.052 13.6 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|147921416|ref|YP_684770.1| - 0.0092 15.9 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain PIF1 PF05970.9 gi|147921416|ref|YP_684770.1| - 0.076 11.9 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_23 PF13476.1 gi|147921416|ref|YP_684770.1| - 0.1 12.9 0.6 0.24 11.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|147921416|ref|YP_684770.1| - 0.13 11.7 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain T2SF PF00482.18 gi|147921417|ref|YP_684769.1| - 2.6e-12 46.7 2.8 9.2e-11 41.7 0.2 3.5 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F APOBEC_C PF05240.9 gi|147921417|ref|YP_684769.1| - 0.062 12.7 1.1 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 APOBEC-like C-terminal domain Reticulon PF02453.12 gi|147921417|ref|YP_684769.1| - 0.18 11.3 0.1 0.18 11.3 0.1 2.8 2 1 0 2 2 2 0 Reticulon SOBP PF15279.1 gi|147921418|ref|YP_684768.1| - 0.005 17.2 3.3 0.0064 16.9 2.3 1.1 1 0 0 1 1 1 1 Sine oculis-binding protein TIP120 PF08623.5 gi|147921418|ref|YP_684768.1| - 0.096 12.2 1.8 0.11 12.1 0.2 1.8 2 0 0 2 2 2 0 TATA-binding protein interacting (TIP20) DUF948 PF06103.6 gi|147921418|ref|YP_684768.1| - 1.3 8.8 6.8 1.4 8.8 0.1 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) NUDIX PF00293.23 gi|147921420|ref|YP_684766.1| - 3.7e-21 75.1 0.0 4.5e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|147921420|ref|YP_684766.1| - 0.1 12.0 0.0 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 NUDIX domain Claudin_2 PF13903.1 gi|147921421|ref|YP_684765.1| - 2.2 7.9 7.8 9 5.9 5.3 2.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF1970 PF09301.5 gi|147921423|ref|YP_684763.1| - 0.041 13.9 0.8 0.087 12.8 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1970) DUF4366 PF14283.1 gi|147921425|ref|YP_684761.1| - 0.032 13.6 0.1 0.077 12.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) Cna_B PF05738.8 gi|147921425|ref|YP_684761.1| - 0.054 13.2 0.8 0.12 12.1 0.6 1.6 1 1 0 1 1 1 0 Cna protein B-type domain CarboxypepD_reg PF13620.1 gi|147921425|ref|YP_684761.1| - 0.066 13.2 0.3 0.066 13.2 0.2 1.9 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF2012 PF09430.5 gi|147921425|ref|YP_684761.1| - 0.08 12.7 0.0 0.098 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) FlgD_ig PF13860.1 gi|147921425|ref|YP_684761.1| - 0.18 11.5 0.9 1.5 8.5 0.6 2.2 1 1 0 1 1 1 0 FlgD Ig-like domain MGC-24 PF05283.6 gi|147921425|ref|YP_684761.1| - 0.59 9.9 6.0 0.95 9.2 4.2 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) Gag_spuma PF03276.9 gi|147921425|ref|YP_684761.1| - 0.62 8.3 4.6 0.77 8.0 3.2 1.1 1 0 0 1 1 1 0 Spumavirus gag protein HEAT_2 PF13646.1 gi|147921426|ref|YP_684760.1| - 4.6e-45 151.8 16.0 1.6e-13 50.7 0.3 5.5 1 1 6 7 7 7 7 HEAT repeats HEAT_PBS PF03130.11 gi|147921426|ref|YP_684760.1| - 6e-20 69.6 1.4 0.033 14.6 0.0 8.5 8 0 0 8 8 8 4 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|147921426|ref|YP_684760.1| - 3.5e-17 60.8 0.1 0.038 14.0 0.0 7.0 6 0 0 6 6 6 4 HEAT repeat HEAT_EZ PF13513.1 gi|147921426|ref|YP_684760.1| - 5e-15 55.4 3.0 0.0011 19.3 0.1 6.6 8 1 0 8 8 8 3 HEAT-like repeat Arm PF00514.18 gi|147921426|ref|YP_684760.1| - 6.1e-08 32.1 0.1 0.02 14.7 0.0 5.4 5 0 0 5 5 5 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|147921426|ref|YP_684760.1| - 1.4e-07 30.2 1.4 3.1e-06 25.7 0.2 3.2 2 1 0 2 2 2 1 Adaptin N terminal region Cnd1 PF12717.2 gi|147921426|ref|YP_684760.1| - 0.00016 21.5 1.8 0.16 11.8 0.1 5.3 4 2 2 6 6 6 1 non-SMC mitotic condensation complex subunit 1 Rifin_STEVOR PF02009.11 gi|147921426|ref|YP_684760.1| - 0.017 14.7 4.8 0.03 13.9 3.3 1.3 1 0 0 1 1 1 0 Rifin/stevor family A2L_zn_ribbon PF08792.5 gi|147921427|ref|YP_684759.1| - 0.054 12.9 0.2 0.095 12.1 0.1 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Archease PF01951.11 gi|147921428|ref|YP_684758.1| - 2.3e-41 140.9 0.2 2.5e-41 140.8 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) CstA PF02554.9 gi|147921428|ref|YP_684758.1| - 0.12 10.9 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Carbon starvation protein CstA RtcB PF01139.12 gi|147921429|ref|YP_684757.1| - 1.4e-157 525.0 0.6 1.6e-157 524.8 0.4 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB HHH_5 PF14520.1 gi|147921430|ref|YP_684756.1| - 0.19 11.9 1.4 1.2 9.3 0.1 2.6 3 0 0 3 3 3 0 Helix-hairpin-helix domain ATP_bind_3 PF01171.15 gi|147921431|ref|YP_684755.1| - 5.5e-17 61.8 0.0 7.8e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|147921431|ref|YP_684755.1| - 2.7e-09 36.0 0.0 4.7e-09 35.2 0.0 1.3 1 1 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|147921431|ref|YP_684755.1| - 0.00017 21.4 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|147921431|ref|YP_684755.1| - 0.001 18.5 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|147921431|ref|YP_684755.1| - 0.016 14.1 0.0 0.021 13.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase IL8 PF00048.15 gi|147921431|ref|YP_684755.1| - 0.017 15.0 0.2 0.041 13.8 0.1 1.6 1 0 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like QueC PF06508.8 gi|147921431|ref|YP_684755.1| - 0.021 14.1 1.2 0.071 12.3 0.0 2.2 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF2392 PF10288.4 gi|147921431|ref|YP_684755.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2392) Tet_res_leader PF08050.7 gi|147921431|ref|YP_684755.1| - 2.9 7.6 6.1 6.8 6.3 4.2 1.6 1 0 0 1 1 1 0 Tetracycline resistance leader peptide M20_dimer PF07687.9 gi|147921432|ref|YP_684753.1| - 7e-18 64.3 0.0 1.1e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.23 gi|147921432|ref|YP_684753.1| - 4.4e-14 52.4 0.0 5.3e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M20 PF01546.23 gi|147921433|ref|YP_684752.1| - 1.2e-06 28.1 0.0 1.7e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 LCM PF04072.9 gi|147921434|ref|YP_684751.1| - 5.7e-42 143.3 0.0 7.5e-42 142.9 0.0 1.2 1 0 0 1 1 1 1 Leucine carboxyl methyltransferase UbiA PF01040.13 gi|147921435|ref|YP_684750.1| - 2.5e-40 138.3 23.4 2.9e-40 138.0 16.2 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Hemerythrin PF01814.18 gi|147921436|ref|YP_684749.1| - 9.6e-13 48.4 8.2 4.2e-11 43.1 0.3 2.7 1 1 2 3 3 3 2 Hemerythrin HHE cation binding domain 4HBT PF03061.17 gi|147921437|ref|YP_684748.1| - 1.3e-17 63.6 0.5 2.2e-17 62.9 0.3 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|147921437|ref|YP_684748.1| - 1.7e-05 24.7 0.0 2.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|147921437|ref|YP_684748.1| - 0.0049 16.6 0.1 0.0064 16.2 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|147921437|ref|YP_684748.1| - 0.021 14.0 0.0 0.027 13.6 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase KaiC PF06745.8 gi|147921438|ref|YP_684747.1| - 1e-55 188.3 0.8 1.1e-55 188.2 0.6 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|147921438|ref|YP_684747.1| - 2.9e-12 46.3 0.0 3.9e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|147921438|ref|YP_684747.1| - 6.1e-08 32.1 0.1 1.3e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|147921438|ref|YP_684747.1| - 2.4e-07 29.4 0.7 4.8e-07 28.4 0.4 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|147921438|ref|YP_684747.1| - 4e-07 29.6 0.1 8.7e-06 25.2 0.0 2.3 1 1 1 2 2 2 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|147921438|ref|YP_684747.1| - 2.7e-05 23.3 0.0 3.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|147921438|ref|YP_684747.1| - 0.00013 21.6 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|147921438|ref|YP_684747.1| - 0.00024 20.0 0.0 0.0013 17.7 0.0 2.0 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain ResIII PF04851.10 gi|147921438|ref|YP_684747.1| - 0.00024 20.9 0.1 0.0013 18.5 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|147921438|ref|YP_684747.1| - 0.00036 20.0 0.0 0.0005 19.6 0.0 1.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase MEDS PF14417.1 gi|147921438|ref|YP_684747.1| - 0.0011 18.0 0.0 0.0019 17.2 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Zot PF05707.7 gi|147921438|ref|YP_684747.1| - 0.0011 18.4 0.1 0.0016 17.9 0.0 1.5 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) CobU PF02283.11 gi|147921438|ref|YP_684747.1| - 0.0012 18.2 0.0 0.027 13.8 0.0 2.2 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase NTPase_1 PF03266.10 gi|147921438|ref|YP_684747.1| - 0.0015 18.2 0.2 0.0026 17.4 0.2 1.4 1 1 0 1 1 1 1 NTPase PAXNEB PF05625.6 gi|147921438|ref|YP_684747.1| - 0.0017 17.2 0.0 0.0026 16.6 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein AAA_18 PF13238.1 gi|147921438|ref|YP_684747.1| - 0.0026 18.0 0.1 0.0043 17.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|147921438|ref|YP_684747.1| - 0.0035 17.2 0.2 0.0086 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|147921438|ref|YP_684747.1| - 0.0042 16.6 0.0 0.0068 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|147921438|ref|YP_684747.1| - 0.015 15.2 0.1 0.024 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.14 gi|147921438|ref|YP_684747.1| - 0.016 14.6 0.1 0.031 13.7 0.0 1.3 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|147921438|ref|YP_684747.1| - 0.019 15.1 0.5 0.053 13.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|147921438|ref|YP_684747.1| - 0.031 13.0 0.0 0.048 12.3 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus KTI12 PF08433.5 gi|147921438|ref|YP_684747.1| - 0.035 13.3 0.1 0.14 11.3 0.0 1.9 1 1 1 2 2 2 0 Chromatin associated protein KTI12 ATP-synt_ab PF00006.20 gi|147921438|ref|YP_684747.1| - 0.065 12.7 0.1 0.16 11.4 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|147921438|ref|YP_684747.1| - 0.089 12.2 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|147921438|ref|YP_684747.1| - 0.091 13.5 2.5 0.21 12.3 1.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|147921438|ref|YP_684747.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|147921438|ref|YP_684747.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|147921438|ref|YP_684747.1| - 0.15 11.1 0.0 0.5 9.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.24 gi|147921438|ref|YP_684747.1| - 0.18 12.0 0.4 0.44 10.7 0.3 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GrpE PF01025.14 gi|147921439|ref|YP_684746.1| - 4.4e-51 172.7 5.0 5.1e-51 172.5 3.4 1.0 1 0 0 1 1 1 1 GrpE PDCD2_C PF04194.8 gi|147921439|ref|YP_684746.1| - 0.00025 20.6 0.3 0.00038 20.0 0.2 1.3 1 0 0 1 1 1 1 Programmed cell death protein 2, C-terminal putative domain DUF148 PF02520.12 gi|147921439|ref|YP_684746.1| - 0.012 15.3 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF148 SYF2 PF08231.7 gi|147921439|ref|YP_684746.1| - 0.061 13.4 0.9 0.089 12.9 0.6 1.2 1 0 0 1 1 1 0 SYF2 splicing factor CENP-F_leu_zip PF10473.4 gi|147921439|ref|YP_684746.1| - 0.12 12.2 2.5 0.27 11.0 0.6 1.9 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HSP70 PF00012.15 gi|147921440|ref|YP_684745.1| - 7.5e-236 783.7 15.5 5.5e-233 774.2 10.8 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|147921440|ref|YP_684745.1| - 2.3e-21 75.7 6.8 5.9e-21 74.3 4.7 1.7 1 0 0 1 1 1 1 MreB/Mbl protein StbA PF06406.6 gi|147921440|ref|YP_684745.1| - 2.7e-07 29.8 0.2 0.00051 19.0 0.1 2.9 2 1 0 3 3 3 2 StbA protein FtsA PF14450.1 gi|147921440|ref|YP_684745.1| - 0.0017 18.1 10.4 0.33 10.7 0.2 4.9 3 3 0 3 3 3 2 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|147921440|ref|YP_684745.1| - 0.0064 15.6 6.8 0.098 11.7 0.1 3.5 2 1 1 3 3 3 1 Hydantoinase/oxoprolinase CTDII PF01556.13 gi|147921441|ref|YP_684744.1| - 8e-33 112.1 0.3 2.8e-21 75.1 0.0 3.3 3 0 0 3 3 3 3 DnaJ C terminal domain DnaJ PF00226.26 gi|147921441|ref|YP_684744.1| - 2.1e-29 101.0 2.0 3.9e-29 100.1 1.4 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|147921441|ref|YP_684744.1| - 5.9e-15 55.0 16.4 1e-14 54.2 11.4 1.4 1 0 0 1 1 1 1 DnaJ central domain Ogr_Delta PF04606.7 gi|147921441|ref|YP_684744.1| - 0.064 12.9 2.0 0.71 9.5 0.1 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Lar_restr_allev PF14354.1 gi|147921441|ref|YP_684744.1| - 0.24 11.7 10.1 13 6.1 3.7 3.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C3HC4_3 PF13920.1 gi|147921441|ref|YP_684744.1| - 1.8 8.3 5.1 4.3 7.0 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) CbiA PF01656.18 gi|147921442|ref|YP_684743.1| - 2.7e-18 66.1 0.0 3.3e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YhjQ PF06564.7 gi|147921442|ref|YP_684743.1| - 1.4e-07 31.1 0.0 0.011 15.1 0.0 2.2 2 0 0 2 2 2 2 YhjQ protein ArsA_ATPase PF02374.10 gi|147921442|ref|YP_684743.1| - 9.7e-07 28.1 0.0 0.00011 21.4 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_31 PF13614.1 gi|147921442|ref|YP_684743.1| - 6.4e-06 26.1 0.0 0.074 12.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|147921442|ref|YP_684743.1| - 0.0031 16.9 0.0 0.54 9.6 0.0 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain Methyltransf_31 PF13847.1 gi|147921442|ref|YP_684743.1| - 0.01 15.4 0.0 0.09 12.3 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain DUF87 PF01935.12 gi|147921442|ref|YP_684743.1| - 0.026 14.3 0.0 0.085 12.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 MipZ PF09140.6 gi|147921442|ref|YP_684743.1| - 0.035 13.1 0.0 2.9 6.9 0.0 2.1 2 0 0 2 2 2 0 ATPase MipZ MobB PF03205.9 gi|147921442|ref|YP_684743.1| - 0.051 13.2 0.1 0.13 11.9 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|147921442|ref|YP_684743.1| - 0.089 12.3 0.0 0.16 11.5 0.0 1.5 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein ParA PF10609.4 gi|147921442|ref|YP_684743.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 ParA/MinD ATPase like CbiA PF01656.18 gi|147921443|ref|YP_684742.1| - 1.5e-25 89.7 0.1 1.8e-25 89.5 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|147921443|ref|YP_684742.1| - 2e-08 33.7 0.1 0.0026 17.0 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|147921443|ref|YP_684742.1| - 2.3e-08 33.4 0.0 3.4e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|147921443|ref|YP_684742.1| - 7.6e-06 25.4 0.2 0.005 16.2 0.1 2.1 2 0 0 2 2 2 2 YhjQ protein AAA_31 PF13614.1 gi|147921443|ref|YP_684742.1| - 0.00017 21.5 0.1 0.0029 17.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|147921443|ref|YP_684742.1| - 0.0029 17.2 0.1 0.032 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|147921443|ref|YP_684742.1| - 0.0036 16.7 0.2 0.0062 15.9 0.1 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_26 PF13500.1 gi|147921443|ref|YP_684742.1| - 0.005 16.4 2.1 0.018 14.6 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|147921443|ref|YP_684742.1| - 0.0062 15.9 1.3 0.0062 15.9 0.9 1.7 2 1 0 2 2 2 1 AAA domain DAP_epimerase PF01678.14 gi|147921443|ref|YP_684742.1| - 0.0089 15.9 0.1 0.39 10.6 0.0 2.2 1 1 1 2 2 2 1 Diaminopimelate epimerase AAA_10 PF12846.2 gi|147921443|ref|YP_684742.1| - 0.014 14.8 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain KaiC PF06745.8 gi|147921443|ref|YP_684742.1| - 0.019 14.0 0.0 0.053 12.6 0.0 1.9 1 1 0 1 1 1 0 KaiC AAA_16 PF13191.1 gi|147921443|ref|YP_684742.1| - 0.023 14.6 0.4 0.42 10.5 0.0 2.5 3 0 0 3 3 3 0 AAA ATPase domain NACHT PF05729.7 gi|147921443|ref|YP_684742.1| - 0.024 14.2 0.3 0.062 12.9 0.2 1.6 1 0 0 1 1 1 0 NACHT domain MobB PF03205.9 gi|147921443|ref|YP_684742.1| - 0.031 13.9 0.0 0.096 12.3 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|147921443|ref|YP_684742.1| - 0.047 12.5 1.1 0.066 12.0 0.3 1.5 2 0 0 2 2 2 0 NB-ARC domain MipZ PF09140.6 gi|147921443|ref|YP_684742.1| - 0.063 12.3 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 ATPase MipZ DUF87 PF01935.12 gi|147921443|ref|YP_684742.1| - 0.067 13.0 0.2 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF4445 PF14574.1 gi|147921444|ref|YP_684741.1| - 1.5e-136 454.8 1.0 1.8e-136 454.6 0.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer2 PF00111.22 gi|147921444|ref|YP_684741.1| - 9.7e-11 41.2 0.7 2.3e-10 40.0 0.5 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain BcrAD_BadFG PF01869.15 gi|147921444|ref|YP_684741.1| - 5.9e-05 22.5 0.3 0.00023 20.5 0.1 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family CdhD PF03599.11 gi|147921445|ref|YP_684740.1| - 6.9e-120 400.0 0.0 8.1e-120 399.8 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.8 gi|147921445|ref|YP_684740.1| - 7.6e-13 47.8 0.5 1.4e-12 46.9 0.4 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster CdhD PF03599.11 gi|147921446|ref|YP_684739.1| - 1.7e-47 161.7 0.1 7.8e-46 156.2 0.0 2.3 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit Dus PF01207.12 gi|147921446|ref|YP_684739.1| - 0.14 10.9 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) CdhC PF03598.10 gi|147921447|ref|YP_684738.1| - 2.5e-181 602.6 0.0 3.1e-181 602.3 0.0 1.0 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CO_dh PF02552.11 gi|147921448|ref|YP_684737.1| - 5.6e-27 94.3 0.0 9.2e-27 93.6 0.0 1.3 1 1 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit Prismane PF03063.15 gi|147921449|ref|YP_684736.1| - 2.2e-96 323.2 7.2 6.2e-82 275.6 0.0 2.1 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_2 PF12797.2 gi|147921449|ref|YP_684736.1| - 1.2e-05 24.9 14.8 0.0049 16.7 2.4 3.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147921449|ref|YP_684736.1| - 1.3e-05 25.4 11.9 6.2e-05 23.2 8.3 2.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921449|ref|YP_684736.1| - 2.4e-05 24.4 12.3 2.4e-05 24.4 8.5 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147921449|ref|YP_684736.1| - 2.8e-05 24.3 5.0 0.00041 20.6 0.3 3.2 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147921449|ref|YP_684736.1| - 5.9e-05 22.7 25.6 0.00034 20.3 10.7 3.0 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|147921449|ref|YP_684736.1| - 0.00068 19.6 25.6 0.00098 19.1 10.5 2.7 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147921449|ref|YP_684736.1| - 0.00094 18.9 8.2 0.00094 18.9 5.7 2.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147921449|ref|YP_684736.1| - 0.0082 16.5 16.8 0.029 14.7 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|147921449|ref|YP_684736.1| - 0.03 13.9 8.8 0.048 13.2 0.5 2.6 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|147921449|ref|YP_684736.1| - 0.044 13.6 15.0 0.53 10.2 2.6 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147921449|ref|YP_684736.1| - 1.1 10.0 15.8 0.58 10.9 1.0 3.1 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|147921449|ref|YP_684736.1| - 6.8 6.4 27.9 0.043 13.4 1.5 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain AnfG_VnfG PF03139.10 gi|147921450|ref|YP_684735.1| - 0.0057 16.4 0.4 0.0074 16.0 0.3 1.1 1 0 0 1 1 1 1 Vanadium/alternative nitrogenase delta subunit DUF507 PF04368.8 gi|147921450|ref|YP_684735.1| - 0.044 13.4 2.0 0.063 12.9 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF507) TelA PF05816.6 gi|147921450|ref|YP_684735.1| - 0.13 10.9 0.7 0.17 10.5 0.5 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) RBD-FIP PF09457.5 gi|147921450|ref|YP_684735.1| - 0.14 11.9 0.7 0.28 10.9 0.5 1.6 1 0 0 1 1 1 0 FIP domain Rsm22 PF09243.5 gi|147921451|ref|YP_684734.1| - 1e-07 31.2 0.0 1.5e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_23 PF13489.1 gi|147921451|ref|YP_684734.1| - 3.9e-07 29.9 0.0 9.9e-07 28.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921451|ref|YP_684734.1| - 2e-05 25.1 0.0 5.4e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147921451|ref|YP_684734.1| - 0.00013 21.5 0.0 0.0003 20.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147921451|ref|YP_684734.1| - 0.0015 18.9 0.0 0.0069 16.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain CheR PF01739.13 gi|147921451|ref|YP_684734.1| - 0.041 13.1 0.1 1.5 8.0 0.0 2.4 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain TPR_1 PF00515.23 gi|147921452|ref|YP_684733.1| - 9.1e-15 53.5 6.5 0.012 15.2 0.0 5.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|147921452|ref|YP_684733.1| - 2.8e-13 48.6 12.6 0.087 12.7 0.0 6.8 7 0 0 7 7 7 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147921452|ref|YP_684733.1| - 4.4e-13 48.6 11.8 0.0001 21.8 0.2 4.8 3 2 3 6 6 6 4 TPR repeat TPR_12 PF13424.1 gi|147921452|ref|YP_684733.1| - 8.7e-12 44.8 17.8 1.2e-07 31.5 1.4 5.5 3 1 4 7 7 7 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147921452|ref|YP_684733.1| - 1.2e-07 30.9 8.7 1.1 9.1 0.1 6.1 6 0 0 6 6 6 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147921452|ref|YP_684733.1| - 1.8e-06 27.3 3.1 1.6 8.6 0.1 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147921452|ref|YP_684733.1| - 2.5e-05 24.5 8.7 13 6.7 0.0 6.9 3 2 4 7 7 7 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147921452|ref|YP_684733.1| - 2.6e-05 24.3 8.5 3.6 8.2 0.0 6.7 7 0 0 7 7 5 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147921452|ref|YP_684733.1| - 3.9e-05 24.1 12.5 0.05 14.2 0.0 5.1 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147921452|ref|YP_684733.1| - 0.00016 21.9 5.3 2.2 8.6 0.0 5.5 5 2 1 6 6 5 1 Tetratricopeptide repeat RPN7 PF10602.4 gi|147921452|ref|YP_684733.1| - 0.0015 17.9 0.3 0.61 9.4 0.2 3.2 1 1 1 2 2 2 1 26S proteasome subunit RPN7 BLUF PF04940.7 gi|147921452|ref|YP_684733.1| - 0.028 14.1 0.2 0.18 11.5 0.1 2.1 1 1 0 1 1 1 0 Sensors of blue-light using FAD DUF1187 PF06688.6 gi|147921452|ref|YP_684733.1| - 0.081 13.0 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1187) UPF0150 PF03681.10 gi|147921453|ref|YP_684732.1| - 0.00051 19.6 0.0 1.5 8.5 0.0 3.7 3 1 1 4 4 4 2 Uncharacterised protein family (UPF0150) Tautomerase_3 PF14832.1 gi|147921453|ref|YP_684732.1| - 0.075 13.0 0.0 0.32 11.0 0.0 1.9 2 0 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme Usp PF00582.21 gi|147921454|ref|YP_684731.1| - 1.5e-30 106.2 0.0 1.8e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family LysE PF01810.13 gi|147921455|ref|YP_684730.1| - 5.7e-29 100.7 9.6 6.5e-29 100.5 6.6 1.0 1 0 0 1 1 1 1 LysE type translocator Chlam_OMP PF01308.12 gi|147921455|ref|YP_684730.1| - 0.046 12.3 0.8 0.27 9.8 0.2 1.9 1 1 1 2 2 2 0 Chlamydia major outer membrane protein CAAD PF14159.1 gi|147921455|ref|YP_684730.1| - 0.078 12.6 0.8 0.17 11.5 0.1 1.9 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF308 PF03729.8 gi|147921455|ref|YP_684730.1| - 6.9 6.7 10.4 2.2 8.3 2.0 2.6 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) FMN_red PF03358.10 gi|147921456|ref|YP_684729.1| - 5.5e-25 87.6 0.0 7.7e-25 87.1 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147921456|ref|YP_684729.1| - 6.4e-12 45.4 0.0 7.9e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold CarboxypepD_reg PF13620.1 gi|147921457|ref|YP_684728.1| - 2e-11 43.7 2.5 3.8e-11 42.9 1.1 1.9 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.16 gi|147921457|ref|YP_684728.1| - 1.2e-06 27.8 0.1 1.8e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Dioxygenase DUF4480 PF13715.1 gi|147921457|ref|YP_684728.1| - 8.6e-06 25.7 0.2 1.8e-05 24.7 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4480) phage_tail_N PF08400.5 gi|147921457|ref|YP_684728.1| - 0.00057 19.6 0.6 0.0012 18.5 0.4 1.6 1 1 0 1 1 1 1 Prophage tail fibre N-terminal fn3_3 PF14686.1 gi|147921457|ref|YP_684728.1| - 0.0013 18.7 0.1 0.0019 18.2 0.1 1.3 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II Cna_B PF05738.8 gi|147921457|ref|YP_684728.1| - 0.0037 16.9 1.2 0.011 15.4 0.8 1.8 1 1 0 1 1 1 1 Cna protein B-type domain Big_1 PF02369.11 gi|147921457|ref|YP_684728.1| - 0.061 13.2 0.7 0.3 11.0 0.2 2.2 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 1) DnaJ PF00226.26 gi|147921458|ref|YP_684727.1| - 6.4e-26 89.8 0.7 1.2e-25 89.0 0.5 1.4 1 0 0 1 1 1 1 DnaJ domain HAD_2 PF13419.1 gi|147921459|ref|YP_684726.1| - 5.2e-30 104.9 0.0 9.3e-30 104.1 0.0 1.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|147921459|ref|YP_684726.1| - 1.7e-16 61.2 0.0 4.3e-16 59.9 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147921459|ref|YP_684726.1| - 3.6e-07 30.5 0.0 1.1e-06 29.0 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|147921459|ref|YP_684726.1| - 6.4e-06 25.7 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|147921459|ref|YP_684726.1| - 3.6e-05 23.5 0.0 0.011 15.5 0.0 2.8 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|147921459|ref|YP_684726.1| - 0.00073 19.0 0.0 0.0012 18.3 0.0 1.5 1 1 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Put_Phosphatase PF06888.7 gi|147921459|ref|YP_684726.1| - 0.01 15.0 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Putative Phosphatase DUF310 PF03750.8 gi|147921459|ref|YP_684726.1| - 0.049 13.8 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF310) DUF1474 PF07342.6 gi|147921459|ref|YP_684726.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1474) DUF705 PF05152.7 gi|147921459|ref|YP_684726.1| - 0.16 10.9 0.0 0.28 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF705) E3_binding PF02817.12 gi|147921459|ref|YP_684726.1| - 1 9.0 0.0 1 9.0 0.0 3.0 4 0 0 4 4 4 0 e3 binding domain TPP_enzyme_N PF02776.13 gi|147921461|ref|YP_684724.1| - 1.6e-17 63.5 0.0 8.2e-17 61.2 0.0 2.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|147921461|ref|YP_684724.1| - 2.5e-13 49.8 0.0 1.5e-12 47.3 0.1 2.2 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PALP PF00291.20 gi|147921462|ref|YP_684723.1| - 2.5e-26 92.6 0.1 3.2e-26 92.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Fer4_8 PF13183.1 gi|147921463|ref|YP_684722.1| - 6.1e-11 42.1 8.3 1.3e-10 41.1 5.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921463|ref|YP_684722.1| - 1.3e-07 31.7 7.3 3.6e-07 30.3 5.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147921463|ref|YP_684722.1| - 5.8e-07 29.7 8.9 1.5e-06 28.4 6.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147921463|ref|YP_684722.1| - 1.6e-06 27.7 11.0 1.6e-06 27.7 7.6 2.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147921463|ref|YP_684722.1| - 4.1e-06 27.0 7.9 1e-05 25.8 5.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147921463|ref|YP_684722.1| - 0.00012 22.1 12.9 0.0013 18.8 1.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|147921463|ref|YP_684722.1| - 0.00018 21.8 8.7 0.019 15.3 1.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147921463|ref|YP_684722.1| - 0.00039 20.1 15.9 0.0025 17.6 3.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|147921463|ref|YP_684722.1| - 0.0016 17.9 14.2 0.0039 16.7 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147921463|ref|YP_684722.1| - 0.0088 16.7 10.1 0.34 11.6 1.4 2.6 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|147921463|ref|YP_684722.1| - 0.01 15.6 3.1 0.01 15.6 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|147921463|ref|YP_684722.1| - 0.029 14.7 1.0 0.029 14.7 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|147921463|ref|YP_684722.1| - 0.034 13.7 6.0 0.99 9.0 0.4 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|147921463|ref|YP_684722.1| - 0.037 13.8 9.8 0.24 11.3 6.8 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Extensin-like_C PF06904.7 gi|147921463|ref|YP_684722.1| - 0.11 12.2 0.7 0.16 11.6 0.5 1.2 1 0 0 1 1 1 0 Extensin-like protein C-terminus Fer4_15 PF13459.1 gi|147921463|ref|YP_684722.1| - 0.35 11.4 10.2 0.16 12.5 0.8 2.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain stn_TNFRSF12A PF12191.3 gi|147921463|ref|YP_684722.1| - 0.76 9.8 4.0 1.1 9.3 0.3 2.1 2 0 0 2 2 2 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Fer4_3 PF12798.2 gi|147921463|ref|YP_684722.1| - 3.6 8.3 15.3 7.9 7.3 3.5 3.0 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.11 gi|147921464|ref|YP_684721.1| - 2.3e-21 75.5 0.1 5.5e-13 48.7 0.0 2.7 3 0 0 3 3 3 2 Cysteine-rich domain FlpD PF02662.11 gi|147921465|ref|YP_684720.1| - 6.7e-27 93.6 0.2 7.4e-26 90.2 0.0 2.7 2 1 1 3 3 3 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.22 gi|147921465|ref|YP_684720.1| - 4.9e-21 73.4 31.9 3.7e-07 29.4 2.0 4.8 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147921465|ref|YP_684720.1| - 1.8e-16 59.6 24.5 9.3e-09 34.9 2.7 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147921465|ref|YP_684720.1| - 4.7e-15 55.7 23.9 6.5e-08 32.8 2.6 4.2 3 2 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921465|ref|YP_684720.1| - 5.2e-12 45.0 42.7 3.6e-05 23.4 1.3 5.0 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147921465|ref|YP_684720.1| - 9e-12 44.1 31.2 0.00014 21.6 2.2 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|147921465|ref|YP_684720.1| - 2.5e-09 37.3 0.0 6.5e-08 32.6 0.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.1 gi|147921465|ref|YP_684720.1| - 1.3e-08 35.2 18.2 0.038 14.5 0.4 4.8 4 0 0 4 4 4 4 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|147921465|ref|YP_684720.1| - 2.1e-08 33.8 26.8 0.0069 16.2 0.6 5.1 4 1 2 6 6 6 5 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|147921465|ref|YP_684720.1| - 3.7e-08 32.8 0.2 6.3e-08 32.1 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|147921465|ref|YP_684720.1| - 1.5e-07 30.6 4.0 5.7e-05 22.1 1.8 3.5 3 1 0 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|147921465|ref|YP_684720.1| - 1e-06 28.6 0.4 2.4e-06 27.4 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_16 PF13484.1 gi|147921465|ref|YP_684720.1| - 4.3e-06 27.3 28.4 0.0036 18.0 0.3 5.0 5 0 0 5 5 4 3 4Fe-4S double cluster binding domain Thi4 PF01946.12 gi|147921465|ref|YP_684720.1| - 6.4e-06 25.4 0.1 1.5e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Thi4 family Fer4_8 PF13183.1 gi|147921465|ref|YP_684720.1| - 7.4e-06 25.9 28.6 0.013 15.5 4.1 4.1 3 2 2 5 5 4 4 4Fe-4S dicluster domain GIDA PF01134.17 gi|147921465|ref|YP_684720.1| - 1.4e-05 24.1 0.6 3.7e-05 22.7 0.2 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Fer4_9 PF13187.1 gi|147921465|ref|YP_684720.1| - 1.5e-05 25.1 34.8 5.4e-05 23.3 3.6 4.5 3 2 2 5 5 4 3 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|147921465|ref|YP_684720.1| - 5.9e-05 23.3 1.8 0.02 15.2 1.0 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|147921465|ref|YP_684720.1| - 0.00015 20.7 3.1 0.00015 20.7 2.2 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|147921465|ref|YP_684720.1| - 0.00017 21.7 0.1 0.0072 16.4 0.1 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_17 PF13534.1 gi|147921465|ref|YP_684720.1| - 0.00019 21.7 32.6 0.21 11.9 0.9 4.9 3 2 2 5 5 4 4 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147921465|ref|YP_684720.1| - 0.00043 20.6 16.9 0.49 10.8 0.3 4.8 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|147921465|ref|YP_684720.1| - 0.00053 19.8 15.3 0.38 10.6 0.6 4.9 4 1 0 4 4 4 2 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|147921465|ref|YP_684720.1| - 0.00091 18.3 1.3 0.0015 17.6 0.9 1.3 1 0 0 1 1 1 1 FAD binding domain K_oxygenase PF13434.1 gi|147921465|ref|YP_684720.1| - 0.0033 16.4 0.0 2.1 7.1 0.0 2.9 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|147921465|ref|YP_684720.1| - 0.0045 15.5 2.0 0.0094 14.4 1.3 1.6 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.1 gi|147921465|ref|YP_684720.1| - 0.094 12.4 0.6 5.2 6.8 0.4 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|147921465|ref|YP_684720.1| - 0.31 9.6 0.2 0.56 8.7 0.2 1.5 1 0 0 1 1 1 0 Tryptophan halogenase Fer4_13 PF13370.1 gi|147921465|ref|YP_684720.1| - 8.6 6.8 31.5 0.44 10.9 0.9 4.7 4 0 0 4 4 4 0 4Fe-4S single cluster domain UPF0179 PF03684.8 gi|147921466|ref|YP_684719.1| - 7.7e-48 161.7 3.4 8.5e-48 161.5 2.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) FKBP_C PF00254.23 gi|147921467|ref|YP_684718.1| - 6.2e-19 67.8 1.8 1.2e-17 63.6 1.2 2.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DREPP PF05558.7 gi|147921467|ref|YP_684718.1| - 0.13 12.0 3.8 0.069 12.9 1.3 1.5 2 0 0 2 2 2 0 DREPP plasma membrane polypeptide FKBP_C PF00254.23 gi|147921468|ref|YP_684717.1| - 2e-16 59.7 0.8 3.6e-14 52.5 0.1 2.4 1 1 1 2 2 2 2 FKBP-type peptidyl-prolyl cis-trans isomerase HAD_2 PF13419.1 gi|147921469|ref|YP_684716.1| - 1.3e-09 38.4 0.2 2.5e-09 37.6 0.1 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|147921469|ref|YP_684716.1| - 9.6e-08 31.6 0.0 0.00016 21.1 0.0 2.1 2 0 0 2 2 2 2 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase PF00702.21 gi|147921469|ref|YP_684716.1| - 3.5e-05 24.3 0.0 4.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|147921469|ref|YP_684716.1| - 0.038 13.8 0.0 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CYTH PF01928.16 gi|147921470|ref|YP_684715.1| - 2.7e-38 131.4 3.9 3e-38 131.3 2.7 1.0 1 0 0 1 1 1 1 CYTH domain Nitroreductase PF00881.19 gi|147921471|ref|YP_684714.1| - 5.1e-38 130.4 0.0 5.9e-38 130.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family ACT PF01842.20 gi|147921472|ref|YP_684713.1| - 0.02 14.3 0.0 0.06 12.8 0.0 1.8 1 0 0 1 1 1 0 ACT domain Homoserine_dh PF00742.14 gi|147921473|ref|YP_684712.1| - 2.5e-60 203.1 0.1 5.3e-60 202.1 0.0 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|147921473|ref|YP_684712.1| - 3.5e-14 53.1 0.0 6.1e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|147921473|ref|YP_684712.1| - 0.0098 15.4 0.4 0.12 11.9 0.0 2.4 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Malic_M PF03949.10 gi|147921473|ref|YP_684712.1| - 0.039 13.4 0.8 0.067 12.7 0.0 1.7 2 0 0 2 2 2 0 Malic enzyme, NAD binding domain GFO_IDH_MocA PF01408.17 gi|147921473|ref|YP_684712.1| - 0.12 12.8 0.0 0.28 11.7 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold SNO PF01174.14 gi|147921474|ref|YP_684711.1| - 1.1e-56 191.4 0.0 1.3e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|147921474|ref|YP_684711.1| - 1.6e-11 44.0 0.0 2.3e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|147921474|ref|YP_684711.1| - 1.3e-06 28.2 0.0 1.8e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|147921474|ref|YP_684711.1| - 7.6e-06 25.5 0.0 1.4e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I BPL_N PF09825.4 gi|147921474|ref|YP_684711.1| - 0.0019 17.0 0.1 0.08 11.7 0.0 2.1 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal DUF4066 PF13278.1 gi|147921474|ref|YP_684711.1| - 0.0062 15.8 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|147921474|ref|YP_684711.1| - 0.013 14.9 0.0 0.056 12.8 0.0 2.1 1 1 0 1 1 1 0 Peptidase C26 UPF0180 PF03698.8 gi|147921474|ref|YP_684711.1| - 0.019 14.8 0.1 0.15 11.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) DJ-1_PfpI PF01965.19 gi|147921474|ref|YP_684711.1| - 0.066 12.6 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family ST7 PF04184.7 gi|147921474|ref|YP_684711.1| - 0.096 10.8 0.0 0.17 10.1 0.0 1.4 2 0 0 2 2 2 0 ST7 protein Metallophos PF00149.23 gi|147921476|ref|YP_684709.1| - 7e-07 28.8 0.7 9.1e-07 28.4 0.5 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|147921476|ref|YP_684709.1| - 3.4e-05 23.7 0.1 6.2e-05 22.8 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PQ-loop PF04193.9 gi|147921477|ref|YP_684708.1| - 1.5e-09 37.2 2.5 1.5e-09 37.2 1.7 1.9 1 1 1 2 2 2 1 PQ loop repeat MtN3_slv PF03083.11 gi|147921477|ref|YP_684708.1| - 2.7e-05 23.9 3.0 3.3e-05 23.6 2.1 1.1 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.6 gi|147921477|ref|YP_684708.1| - 0.034 14.0 1.0 0.046 13.6 0.7 1.1 1 0 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain ELFV_dehydrog PF00208.16 gi|147921478|ref|YP_684707.1| - 5.1e-64 216.1 0.4 6.7e-64 215.7 0.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|147921478|ref|YP_684707.1| - 3.4e-42 143.1 0.0 8.8e-42 141.7 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|147921478|ref|YP_684707.1| - 0.0016 17.6 0.2 0.0037 16.4 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PhoU_div PF01865.11 gi|147921478|ref|YP_684707.1| - 0.086 12.0 0.1 1.2 8.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF47 ELFV_dehydrog PF00208.16 gi|147921479|ref|YP_684706.1| - 7e-64 215.7 2.2 1.2e-63 214.9 1.5 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|147921479|ref|YP_684706.1| - 2e-50 169.7 0.0 4.8e-50 168.5 0.0 1.7 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ApbA PF02558.11 gi|147921479|ref|YP_684706.1| - 0.026 13.9 0.1 0.044 13.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|147921479|ref|YP_684706.1| - 0.026 14.5 0.3 0.081 12.9 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|147921479|ref|YP_684706.1| - 0.11 11.6 0.1 0.23 10.6 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ribosomal_S6e PF01092.14 gi|147921480|ref|YP_684705.1| - 1e-32 112.4 0.3 1.2e-32 112.2 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e KRTAP PF11759.3 gi|147921487|ref|YP_684698.1| - 2 8.7 27.6 0.37 11.0 9.2 2.4 2 0 0 2 2 2 0 Keratin-associated matrix MS_channel PF00924.13 gi|147921489|ref|YP_684696.1| - 1.5e-33 115.8 2.2 1.5e-33 115.8 1.5 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel Cornichon PF03311.9 gi|147921489|ref|YP_684696.1| - 0.089 12.9 6.4 0.15 12.2 4.5 1.4 1 0 0 1 1 1 0 Cornichon protein DUF2919 PF11143.3 gi|147921489|ref|YP_684696.1| - 0.14 12.0 4.8 0.21 11.3 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2919) Ribosomal_L18e PF00828.14 gi|147921490|ref|YP_684695.1| - 1.3e-14 54.6 0.1 1.7e-14 54.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 XPC-binding PF09280.6 gi|147921490|ref|YP_684695.1| - 0.13 11.6 0.0 0.51 9.8 0.0 1.8 2 0 0 2 2 2 0 XPC-binding domain Ribosomal_L13 PF00572.13 gi|147921491|ref|YP_684694.1| - 1.2e-26 93.2 0.0 1.5e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|147921492|ref|YP_684693.1| - 1.1e-33 116.0 0.4 1.3e-33 115.8 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|147921493|ref|YP_684692.1| - 1e-27 95.8 0.4 1.2e-27 95.6 0.3 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|147921493|ref|YP_684692.1| - 0.041 13.9 1.5 0.41 10.7 1.0 2.1 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) YhfH PF14149.1 gi|147921493|ref|YP_684692.1| - 0.077 12.7 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 YhfH-like protein RNA_pol_Rpb6 PF01192.17 gi|147921494|ref|YP_684691.1| - 1.2e-17 63.3 0.3 1.8e-17 62.8 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|147921495|ref|YP_684690.1| - 2.5e-73 246.6 0.1 3.8e-73 246.0 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|147921495|ref|YP_684690.1| - 7.3e-42 142.4 0.1 1.8e-41 141.1 0.1 1.7 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|147921495|ref|YP_684690.1| - 0.0027 18.2 0.0 0.0061 17.0 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Ribosomal_S2 PF00318.15 gi|147921496|ref|YP_684689.1| - 1.2e-40 139.0 0.0 1.3e-19 70.2 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|147921496|ref|YP_684689.1| - 0.081 11.6 0.1 0.11 11.1 0.0 1.4 1 1 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Mito_fiss_Elm1 PF06258.6 gi|147921496|ref|YP_684689.1| - 0.15 11.0 0.0 0.2 10.5 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial fission ELM1 Memo PF01875.12 gi|147921497|ref|YP_684688.1| - 6.8e-77 258.0 0.0 7.8e-77 257.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein GHMP_kinases_N PF00288.21 gi|147921498|ref|YP_684687.1| - 6e-17 61.4 0.8 1.6e-16 60.0 0.6 1.8 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|147921498|ref|YP_684687.1| - 2.3e-15 56.5 0.4 1.6e-14 53.8 0.2 2.4 3 0 0 3 3 3 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|147921498|ref|YP_684687.1| - 0.0038 16.4 0.0 0.01 15.0 0.0 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|147921499|ref|YP_684686.1| - 3.4e-42 144.6 1.2 3.9e-42 144.4 0.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|147921500|ref|YP_684685.1| - 3.9e-33 114.7 0.2 3.4e-19 68.9 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|147921500|ref|YP_684685.1| - 9.6e-08 31.2 1.8 0.008 15.1 0.6 3.2 2 1 1 3 3 3 3 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|147921500|ref|YP_684685.1| - 0.00033 19.7 0.7 0.22 10.4 0.0 2.3 2 1 0 2 2 2 2 Dihydroorotate dehydrogenase NMO PF03060.10 gi|147921500|ref|YP_684685.1| - 0.0005 19.3 0.6 0.003 16.7 0.2 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase DUF561 PF04481.7 gi|147921500|ref|YP_684685.1| - 0.015 14.2 1.2 0.2 10.5 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|147921500|ref|YP_684685.1| - 0.056 12.6 1.7 1.5 8.0 0.0 2.8 2 1 2 4 4 4 0 Histidine biosynthesis protein Lactamase_B PF00753.22 gi|147921501|ref|YP_684684.1| - 1.1e-16 61.1 0.0 2.2e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147921501|ref|YP_684684.1| - 4.3e-09 36.2 0.1 1.5e-07 31.2 0.0 2.2 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|147921501|ref|YP_684684.1| - 1e-08 34.8 0.3 2.5e-08 33.5 0.2 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DUF422 PF04240.7 gi|147921502|ref|YP_684683.1| - 1.3e-28 99.9 14.2 1.3e-28 99.9 9.9 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF422) Yip1 PF04893.12 gi|147921502|ref|YP_684683.1| - 0.1 12.0 33.3 0.68 9.4 2.9 3.2 1 1 0 2 2 2 0 Yip1 domain UbiA PF01040.13 gi|147921503|ref|YP_684682.1| - 2e-10 40.3 35.1 3e-10 39.7 23.6 1.9 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF4405 PF14358.1 gi|147921503|ref|YP_684682.1| - 5.5 7.2 17.6 0.58 10.3 6.0 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) FA_desaturase PF00487.19 gi|147921503|ref|YP_684682.1| - 7 5.9 14.8 0.31 10.4 4.1 2.1 1 1 1 2 2 2 0 Fatty acid desaturase HisKA_2 PF07568.7 gi|147921504|ref|YP_684681.1| - 4.2e-28 97.0 5.1 1.3e-27 95.4 3.5 1.9 1 0 0 1 1 1 1 Histidine kinase HATPase_c PF02518.21 gi|147921504|ref|YP_684681.1| - 1.2e-12 47.5 0.1 2.8e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|147921504|ref|YP_684681.1| - 6.7e-07 29.6 0.1 3.3e-06 27.4 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|147921504|ref|YP_684681.1| - 3.3e-06 26.8 0.0 7.9e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold HWE_HK PF07536.9 gi|147921504|ref|YP_684681.1| - 4.9e-06 26.8 0.3 1.1e-05 25.7 0.2 1.6 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|147921504|ref|YP_684681.1| - 1.8e-05 24.5 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|147921504|ref|YP_684681.1| - 2.3e-05 24.3 0.0 0.00015 21.7 0.0 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|147921504|ref|YP_684681.1| - 0.0025 17.4 0.1 0.0054 16.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|147921504|ref|YP_684681.1| - 0.017 14.9 0.0 0.068 13.0 0.0 2.0 1 0 0 1 1 1 0 PAS domain FAA_hydrolase PF01557.13 gi|147921505|ref|YP_684680.1| - 2.3e-70 236.4 0.0 2.8e-70 236.1 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family NAD_binding_1 PF00175.16 gi|147921506|ref|YP_684679.1| - 6.3e-13 49.2 0.0 1.2e-12 48.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain DHODB_Fe-S_bind PF10418.4 gi|147921506|ref|YP_684679.1| - 7.2e-13 47.7 5.6 1.3e-12 46.9 3.9 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_6 PF00970.19 gi|147921506|ref|YP_684679.1| - 7.1e-08 32.4 0.0 3e-07 30.4 0.0 2.0 2 1 0 2 2 2 1 Oxidoreductase FAD-binding domain Fer2_3 PF13085.1 gi|147921506|ref|YP_684679.1| - 0.24 11.2 1.9 0.49 10.2 1.3 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHO_dh PF01180.16 gi|147921507|ref|YP_684678.1| - 6.3e-67 225.6 0.7 7.2e-67 225.4 0.5 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|147921507|ref|YP_684678.1| - 3.3e-10 39.3 0.8 2.4e-05 23.3 0.0 2.9 1 1 2 3 3 3 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|147921507|ref|YP_684678.1| - 0.00028 20.2 0.1 0.0068 15.6 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.10 gi|147921507|ref|YP_684678.1| - 0.00055 19.1 1.6 0.0012 18.0 0.9 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.7 gi|147921507|ref|YP_684678.1| - 0.0091 14.9 0.5 0.027 13.3 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Methyltransf_26 PF13659.1 gi|147921508|ref|YP_684677.1| - 8.3e-17 61.2 0.0 1.6e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|147921508|ref|YP_684677.1| - 1.7e-13 50.8 0.0 3.9e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.11 gi|147921508|ref|YP_684677.1| - 5e-12 45.5 0.0 2e-11 43.5 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase TaqI_C PF12950.2 gi|147921508|ref|YP_684677.1| - 2.5e-09 36.8 0.0 5.3e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain UPF0020 PF01170.13 gi|147921508|ref|YP_684677.1| - 0.00026 20.6 0.0 0.00065 19.3 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|147921508|ref|YP_684677.1| - 0.0036 16.7 0.0 0.49 9.7 0.0 2.9 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|147921508|ref|YP_684677.1| - 0.017 14.7 0.0 0.048 13.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Kri1 PF05178.7 gi|147921508|ref|YP_684677.1| - 0.042 14.1 0.0 0.086 13.1 0.0 1.5 1 0 0 1 1 1 0 KRI1-like family Methyltransf_18 PF12847.2 gi|147921508|ref|YP_684677.1| - 0.064 13.8 0.0 0.54 10.8 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147921508|ref|YP_684677.1| - 0.081 13.4 0.0 0.22 12.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921508|ref|YP_684677.1| - 0.14 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain GHMP_kinases_C PF08544.8 gi|147921509|ref|YP_684675.1| - 3.1e-10 40.0 0.1 1.1e-09 38.3 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|147921509|ref|YP_684675.1| - 1.8e-06 27.9 0.5 3.3e-06 27.0 0.3 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Nop PF01798.13 gi|147921510|ref|YP_684674.1| - 1.4e-43 147.7 0.1 2.4e-43 147.0 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|147921510|ref|YP_684674.1| - 7.9e-08 31.9 0.1 1.5e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|147921511|ref|YP_684673.1| - 5.7e-69 231.5 0.0 6.7e-69 231.3 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin PqqD PF05402.7 gi|147921512|ref|YP_684672.1| - 1.8e-14 53.5 0.0 2.5e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) MttA_Hcf106 PF02416.11 gi|147921513|ref|YP_684671.1| - 4e-12 45.0 0.1 6.6e-12 44.3 0.1 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family Di19_C PF14571.1 gi|147921513|ref|YP_684671.1| - 0.029 14.6 0.2 0.039 14.2 0.1 1.3 1 1 0 1 1 1 0 Stress-induced protein Di19, C-terminal DUF4463 PF14703.1 gi|147921513|ref|YP_684671.1| - 0.18 12.3 1.5 1.8 9.1 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4463) ABC_tran PF00005.22 gi|147921514|ref|YP_684670.1| - 8.7e-33 113.5 0.0 1.1e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|147921514|ref|YP_684670.1| - 4.3e-20 71.8 0.2 7.1e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|147921514|ref|YP_684670.1| - 8e-11 42.4 0.2 6.9e-08 32.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|147921514|ref|YP_684670.1| - 5.3e-05 22.5 0.0 9.8e-05 21.6 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|147921514|ref|YP_684670.1| - 0.00053 19.1 0.1 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|147921514|ref|YP_684670.1| - 0.0051 16.9 0.1 0.025 14.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|147921514|ref|YP_684670.1| - 0.0062 16.7 0.1 0.072 13.2 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|147921514|ref|YP_684670.1| - 0.044 13.1 0.1 2.6 7.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|147921514|ref|YP_684670.1| - 0.054 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP-synt_ab PF00006.20 gi|147921514|ref|YP_684670.1| - 0.057 12.9 0.1 0.092 12.2 0.1 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|147921514|ref|YP_684670.1| - 0.065 12.7 0.0 3.5 7.0 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|147921514|ref|YP_684670.1| - 0.079 12.1 0.1 0.079 12.1 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|147921514|ref|YP_684670.1| - 0.097 12.6 0.2 0.17 11.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|147921514|ref|YP_684670.1| - 0.098 12.9 0.0 0.59 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|147921514|ref|YP_684670.1| - 0.11 12.0 0.1 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|147921514|ref|YP_684670.1| - 0.21 9.9 0.4 0.76 8.1 0.0 2.0 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|147921515|ref|YP_684669.1| - 1.6e-26 93.2 0.0 2.1e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|147921515|ref|YP_684669.1| - 8.6e-19 67.6 0.1 1.6e-18 66.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|147921515|ref|YP_684669.1| - 2.3e-08 34.3 0.5 9.9e-08 32.2 0.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|147921515|ref|YP_684669.1| - 0.0023 17.2 0.1 0.0055 15.9 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.20 gi|147921515|ref|YP_684669.1| - 0.0059 16.1 0.2 0.012 15.0 0.1 1.5 1 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|147921515|ref|YP_684669.1| - 0.015 15.4 0.3 0.1 12.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|147921515|ref|YP_684669.1| - 0.067 12.5 0.1 0.25 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|147921515|ref|YP_684669.1| - 0.17 10.8 0.9 0.51 9.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|147921516|ref|YP_684668.1| - 4.1e-39 134.0 6.8 2.9e-38 131.2 2.9 2.2 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|147921516|ref|YP_684668.1| - 7.2e-13 47.6 0.2 7.2e-13 47.6 0.1 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C Pox_P21 PF05313.7 gi|147921516|ref|YP_684668.1| - 0.1 11.8 2.0 0.13 11.4 0.4 1.9 2 0 0 2 2 2 0 Poxvirus P21 membrane protein PsbL PF02419.12 gi|147921516|ref|YP_684668.1| - 7.7 6.0 7.5 0.2 11.1 0.5 1.8 2 0 0 2 2 2 0 PsbL protein BPD_transp_1 PF00528.17 gi|147921517|ref|YP_684667.1| - 3.6e-43 147.2 14.6 3.6e-43 147.2 10.1 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3671 PF12420.3 gi|147921517|ref|YP_684667.1| - 9.8 6.2 8.4 10 6.1 0.1 3.0 4 0 0 4 4 4 0 Protein of unknown function SBP_bac_5 PF00496.17 gi|147921518|ref|YP_684666.1| - 2.2e-90 303.1 1.7 3e-90 302.7 1.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PALP PF00291.20 gi|147921519|ref|YP_684665.1| - 1.4e-66 224.8 2.8 1.6e-66 224.5 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|147921519|ref|YP_684665.1| - 0.014 14.8 0.2 0.11 12.0 0.0 2.3 2 1 0 2 2 2 0 Pyruvate kinase, alpha/beta domain DUF835 PF05763.7 gi|147921520|ref|YP_684664.1| - 1.7e-23 82.7 1.0 3e-23 81.8 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF835) PAS_9 PF13426.1 gi|147921520|ref|YP_684664.1| - 2.8e-18 66.1 0.0 2e-10 40.9 0.0 2.9 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|147921520|ref|YP_684664.1| - 3.2e-13 49.4 0.0 3.8e-05 23.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|147921520|ref|YP_684664.1| - 6.2e-12 45.4 0.1 1.2e-11 44.5 0.1 1.5 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|147921520|ref|YP_684664.1| - 2.8e-10 40.3 0.0 6.8e-10 39.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|147921520|ref|YP_684664.1| - 4.3e-08 33.1 0.0 3.6e-05 23.7 0.0 2.5 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|147921520|ref|YP_684664.1| - 1.2e-05 25.8 0.1 4.5e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 GAF domain DUF4118 PF13493.1 gi|147921520|ref|YP_684664.1| - 0.13 12.4 6.3 0.28 11.4 4.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) DUF2284 PF10050.4 gi|147921521|ref|YP_684663.1| - 3e-49 166.8 0.0 3.4e-49 166.6 0.0 1.0 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2284) DUF4013 PF13197.1 gi|147921522|ref|YP_684662.1| - 3.2e-29 101.4 31.6 5.4e-29 100.6 21.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) DUF1180 PF06679.7 gi|147921523|ref|YP_684661.1| - 0.13 12.1 2.0 0.25 11.2 1.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) GSDH PF07995.6 gi|147921524|ref|YP_684660.1| - 2.7e-29 102.2 0.0 1.4e-28 99.9 0.0 1.9 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase PQQ_3 PF13570.1 gi|147921524|ref|YP_684660.1| - 0.0096 16.1 0.5 0.21 11.9 0.0 3.2 3 0 0 3 3 3 1 PQQ-like domain NHL PF01436.16 gi|147921524|ref|YP_684660.1| - 0.05 13.5 4.8 1.4 9.0 0.0 4.5 5 0 0 5 5 5 0 NHL repeat Reg_prop PF07494.6 gi|147921524|ref|YP_684660.1| - 0.36 11.0 3.3 49 4.4 0.0 3.8 3 0 0 3 3 3 0 Two component regulator propeller GSDH PF07995.6 gi|147921525|ref|YP_684659.1| - 1.3e-25 90.1 0.0 1e-24 87.2 0.0 2.0 1 1 0 1 1 1 1 Glucose / Sorbosone dehydrogenase NHL PF01436.16 gi|147921525|ref|YP_684659.1| - 0.058 13.3 0.0 12 6.1 0.0 3.7 3 0 0 3 3 3 0 NHL repeat Apyrase PF06079.6 gi|147921525|ref|YP_684659.1| - 0.19 10.8 0.0 0.35 9.9 0.0 1.3 1 0 0 1 1 1 0 Apyrase Ribosomal_S10 PF00338.17 gi|147921526|ref|YP_684658.1| - 9.3e-30 102.3 0.0 1e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|147921527|ref|YP_684657.1| - 7.1e-59 198.4 0.0 1.1e-58 197.8 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|147921527|ref|YP_684657.1| - 2.3e-31 107.8 0.5 9.7e-31 105.8 0.2 2.1 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|147921527|ref|YP_684657.1| - 6e-15 55.1 2.0 1e-14 54.4 0.8 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|147921527|ref|YP_684657.1| - 4.7e-07 29.7 0.0 1.3e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.1 gi|147921527|ref|YP_684657.1| - 1.8e-05 24.2 0.8 4.4e-05 23.0 0.5 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Miro PF08477.8 gi|147921527|ref|YP_684657.1| - 4.3e-05 24.0 0.0 0.0012 19.2 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein Gtr1_RagA PF04670.7 gi|147921527|ref|YP_684657.1| - 0.00034 19.8 0.0 0.096 11.8 0.0 2.1 2 0 0 2 2 2 2 Gtr1/RagA G protein conserved region FeoB_N PF02421.13 gi|147921527|ref|YP_684657.1| - 0.0092 15.2 0.1 0.21 10.8 0.0 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|147921527|ref|YP_684657.1| - 0.024 14.4 0.1 1.8 8.3 0.0 2.3 1 1 0 1 1 1 0 Dynamin family 7TM_GPCR_Srsx PF10320.4 gi|147921527|ref|YP_684657.1| - 0.043 12.9 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srsx NTP_transf_3 PF12804.2 gi|147921527|ref|YP_684657.1| - 0.064 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Septin PF00735.13 gi|147921527|ref|YP_684657.1| - 0.074 12.0 0.0 0.16 10.9 0.0 1.5 1 0 0 1 1 1 0 Septin GTP_EFTU PF00009.22 gi|147921528|ref|YP_684656.1| - 5e-59 198.8 0.1 8.9e-59 198.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|147921528|ref|YP_684656.1| - 5.1e-27 93.8 0.0 1.4e-26 92.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|147921528|ref|YP_684656.1| - 8e-24 83.2 3.4 3.1e-23 81.3 0.4 2.5 2 0 0 2 2 2 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|147921528|ref|YP_684656.1| - 4.1e-22 77.8 0.0 2e-21 75.6 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|147921528|ref|YP_684656.1| - 4.5e-11 42.6 0.7 1.4e-10 41.0 0.5 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|147921528|ref|YP_684656.1| - 0.00013 21.8 0.0 0.00031 20.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|147921528|ref|YP_684656.1| - 0.049 13.0 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Ras family Ribosomal_S7 PF00177.16 gi|147921529|ref|YP_684655.1| - 3.8e-39 133.6 0.6 4.9e-39 133.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GreA_GreB PF01272.14 gi|147921529|ref|YP_684655.1| - 0.016 14.8 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcription elongation factor, GreA/GreB, C-term Ribosom_S12_S23 PF00164.20 gi|147921530|ref|YP_684654.1| - 2.7e-39 133.3 0.0 3.2e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|147921531|ref|YP_684653.1| - 5.7e-22 77.0 4.9 9.6e-15 53.9 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|147921531|ref|YP_684653.1| - 1.8e-16 59.6 3.9 2.1e-15 56.2 0.4 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|147921531|ref|YP_684653.1| - 6.9e-11 41.6 1.0 5.1e-06 26.0 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|147921531|ref|YP_684653.1| - 6.5e-06 25.6 5.4 0.0068 16.0 0.3 2.4 2 0 0 2 2 2 2 KH domain ATP-synt PF00231.14 gi|147921531|ref|YP_684653.1| - 0.00052 19.4 0.4 0.15 11.4 0.1 2.0 1 1 1 2 2 2 2 ATP synthase XS PF03468.9 gi|147921531|ref|YP_684653.1| - 0.047 13.6 0.0 0.085 12.7 0.0 1.5 1 1 0 1 1 1 0 XS domain KH_3 PF13014.1 gi|147921531|ref|YP_684653.1| - 0.28 10.8 9.3 1.9 8.2 1.1 2.8 3 0 0 3 3 3 0 KH domain Ribosomal_L7Ae PF01248.21 gi|147921532|ref|YP_684652.1| - 1.8e-15 56.2 0.0 2.5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|147921533|ref|YP_684651.1| - 9.6e-50 169.3 1.1 1.6e-49 168.6 0.8 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 NAC PF01849.13 gi|147921533|ref|YP_684651.1| - 0.0037 16.7 0.7 0.012 15.0 0.1 2.2 2 0 0 2 2 2 1 NAC domain Striatin PF08232.7 gi|147921533|ref|YP_684651.1| - 0.037 14.3 0.0 0.063 13.6 0.0 1.4 1 0 0 1 1 1 0 Striatin family RNA_pol_Rpb1_7 PF04990.7 gi|147921533|ref|YP_684651.1| - 0.055 13.1 0.2 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 7 Lip_prot_lig_C PF10437.4 gi|147921533|ref|YP_684651.1| - 0.084 12.5 0.3 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus FTA4 PF13093.1 gi|147921533|ref|YP_684651.1| - 0.09 12.2 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 RNA_pol_Rpb1_1 PF04997.7 gi|147921534|ref|YP_684650.1| - 3.9e-88 295.9 0.0 7.3e-86 288.4 0.0 2.4 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|147921534|ref|YP_684650.1| - 2.5e-68 229.1 0.1 4.1e-68 228.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_5 PF04998.12 gi|147921534|ref|YP_684650.1| - 2.5e-31 108.9 0.0 4.9e-31 108.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|147921534|ref|YP_684650.1| - 5.1e-30 103.3 0.0 1e-29 102.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|147921534|ref|YP_684650.1| - 1.4e-29 102.8 0.0 2.4e-29 102.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 Rpr2 PF04032.11 gi|147921534|ref|YP_684650.1| - 0.95 9.3 5.1 0.6 10.0 0.1 2.7 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_2 PF13240.1 gi|147921534|ref|YP_684650.1| - 4 7.0 9.9 1.3 8.5 0.3 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|147921534|ref|YP_684650.1| - 4.4 7.1 10.2 0.89 9.3 0.1 3.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb2_6 PF00562.23 gi|147921535|ref|YP_684649.1| - 2.1e-122 408.6 0.0 2.8e-122 408.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|147921535|ref|YP_684649.1| - 3.5e-28 97.6 0.1 6.2e-28 96.8 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|147921535|ref|YP_684649.1| - 1.4e-25 88.8 0.7 2.9e-25 87.8 0.5 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|147921535|ref|YP_684649.1| - 6.8e-14 51.5 0.4 1.3e-13 50.6 0.3 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Auto_anti-p27 PF06677.7 gi|147921535|ref|YP_684649.1| - 0.0027 17.4 0.6 0.0051 16.5 0.4 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|147921535|ref|YP_684649.1| - 0.0082 15.3 4.2 0.021 14.0 2.9 1.7 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|147921535|ref|YP_684649.1| - 0.016 15.1 0.9 0.031 14.2 0.6 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|147921535|ref|YP_684649.1| - 0.019 14.7 0.4 0.038 13.8 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|147921535|ref|YP_684649.1| - 0.027 13.9 3.2 0.05 13.0 2.2 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|147921535|ref|YP_684649.1| - 0.029 14.0 1.3 0.058 13.0 0.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|147921535|ref|YP_684649.1| - 0.12 12.0 0.1 11 5.8 0.0 2.5 2 0 0 2 2 2 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|147921535|ref|YP_684649.1| - 0.14 11.9 0.3 0.31 10.8 0.2 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|147921535|ref|YP_684649.1| - 0.15 11.5 0.8 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|147921535|ref|YP_684649.1| - 0.21 10.9 5.4 4.5 6.6 0.5 2.4 1 1 0 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|147921535|ref|YP_684649.1| - 0.72 10.0 5.5 6 7.0 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNA_pol_Rpb2_1 PF04563.10 gi|147921536|ref|YP_684648.1| - 6e-57 191.8 0.0 7.2e-57 191.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|147921536|ref|YP_684648.1| - 4.4e-26 91.4 0.1 6.9e-26 90.8 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|147921536|ref|YP_684648.1| - 2.4e-24 84.8 0.0 4.1e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|297616212|ref|YP_003710351.1| - 1.1e-31 108.2 0.2 1.2e-31 108.0 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Clp_N PF02861.15 gi|297616212|ref|YP_003710351.1| - 0.07 13.0 0.1 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Clp amino terminal domain LEM PF03020.10 gi|297616212|ref|YP_003710351.1| - 0.1 12.0 0.1 0.52 9.8 0.0 1.9 2 0 0 2 2 2 0 LEM domain Beta-Casp PF10996.3 gi|147921537|ref|YP_684647.1| - 1.2e-24 86.6 0.0 3.7e-24 85.0 0.0 1.8 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|147921537|ref|YP_684647.1| - 3.7e-13 49.5 1.3 1.4e-12 47.7 0.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|147921537|ref|YP_684647.1| - 5.2e-11 42.4 0.0 7.8e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|147921537|ref|YP_684647.1| - 1.5e-10 40.6 0.0 1.5e-10 40.6 0.0 2.6 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|147921537|ref|YP_684647.1| - 0.00034 20.3 0.1 0.00068 19.3 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Hemerythrin PF01814.18 gi|147921538|ref|YP_684646.1| - 7.5e-11 42.3 2.9 7.5e-11 42.3 2.0 2.1 1 1 0 2 2 2 1 Hemerythrin HHE cation binding domain SRR1 PF07985.7 gi|147921538|ref|YP_684646.1| - 0.024 14.5 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 SRR1 FCD PF07729.7 gi|147921538|ref|YP_684646.1| - 6.1 7.1 7.2 49 4.2 3.5 2.6 2 1 0 2 2 2 0 FCD domain eIF-1a PF01176.14 gi|147921539|ref|YP_684645.1| - 8.8e-22 76.3 1.4 8.8e-22 76.3 1.0 1.4 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 Pyridox_ox_2 PF12900.2 gi|147921540|ref|YP_684644.1| - 1.8e-22 79.7 0.0 2.2e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|147921540|ref|YP_684644.1| - 1.9e-05 24.5 0.0 2.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1938 PF09153.5 gi|147921540|ref|YP_684644.1| - 0.065 13.0 0.0 0.15 11.8 0.0 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1938) PqqD PF05402.7 gi|147921540|ref|YP_684644.1| - 0.087 12.8 0.2 0.83 9.7 0.0 2.2 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DUF1045 PF06299.7 gi|147921540|ref|YP_684644.1| - 0.09 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1045) SelR PF01641.13 gi|147921541|ref|YP_684643.1| - 7.7e-54 180.6 0.0 1e-53 180.3 0.0 1.1 1 0 0 1 1 1 1 SelR domain DEAD PF00270.24 gi|147921542|ref|YP_684642.1| - 1e-46 158.4 0.1 3.4e-46 156.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|147921542|ref|YP_684642.1| - 3.6e-28 97.2 0.1 9.3e-27 92.7 0.0 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain TPR_14 PF13428.1 gi|147921542|ref|YP_684642.1| - 0.0018 18.7 0.3 0.45 11.2 0.0 3.1 2 0 0 2 2 2 1 Tetratricopeptide repeat ResIII PF04851.10 gi|147921542|ref|YP_684642.1| - 0.0053 16.6 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|147921542|ref|YP_684642.1| - 0.006 15.4 0.0 0.0082 14.9 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_RecD PF05127.9 gi|147921542|ref|YP_684642.1| - 0.066 12.8 0.1 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 Helicase TPR_19 PF14559.1 gi|147921542|ref|YP_684642.1| - 0.14 12.5 1.4 1.4 9.2 0.0 3.0 3 1 0 3 3 3 0 Tetratricopeptide repeat DUF4137 PF13593.1 gi|147921542|ref|YP_684642.1| - 0.23 10.5 0.0 0.37 9.8 0.0 1.2 1 0 0 1 1 1 0 SBF-like CPA transporter family (DUF4137) Na_Ca_ex PF01699.19 gi|147921544|ref|YP_684640.1| - 8.5e-23 80.5 23.3 6.6e-13 48.4 3.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4017 PF13209.1 gi|147921544|ref|YP_684640.1| - 1.1 9.0 4.7 4.8 7.0 0.9 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4017) Usp PF00582.21 gi|147921545|ref|YP_684639.1| - 6.5e-30 104.1 0.0 7.6e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|147921545|ref|YP_684639.1| - 0.13 11.5 0.0 0.51 9.5 0.0 1.8 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel HisKA_2 PF07568.7 gi|147921546|ref|YP_684637.1| - 3.1e-32 110.2 0.6 8.5e-32 108.8 0.4 1.8 1 0 0 1 1 1 1 Histidine kinase PAS_9 PF13426.1 gi|147921546|ref|YP_684637.1| - 1e-24 86.8 0.2 6e-11 42.6 0.0 2.6 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|147921546|ref|YP_684637.1| - 1.5e-22 79.5 0.1 8.1e-11 41.7 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|147921546|ref|YP_684637.1| - 9.5e-16 57.0 0.1 2e-07 30.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|147921546|ref|YP_684637.1| - 6.6e-15 54.7 0.0 1.2e-14 53.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147921546|ref|YP_684637.1| - 1.7e-08 34.4 0.0 0.0007 19.6 0.0 2.7 3 0 0 3 3 3 2 PAS fold HWE_HK PF07536.9 gi|147921546|ref|YP_684637.1| - 8.3e-08 32.5 0.2 3e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|147921546|ref|YP_684637.1| - 5e-07 29.5 0.0 1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|147921546|ref|YP_684637.1| - 0.0024 17.9 0.0 1.3 9.1 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c_3 PF13589.1 gi|147921546|ref|YP_684637.1| - 0.0084 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abhydrolase_6 PF12697.2 gi|147921547|ref|YP_684636.1| - 6.4e-35 121.0 1.6 7.3e-35 120.8 1.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|147921547|ref|YP_684636.1| - 1.9e-16 60.1 0.0 3.7e-16 59.2 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|147921547|ref|YP_684636.1| - 3.6e-12 46.3 0.0 5.2e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.15 gi|147921547|ref|YP_684636.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Thymidylat_synt PF00303.14 gi|147921548|ref|YP_684635.1| - 1.7e-17 63.3 0.3 2.8e-17 62.5 0.2 1.4 1 1 0 1 1 1 1 Thymidylate synthase TatD_DNase PF01026.16 gi|147921549|ref|YP_684634.1| - 2.4e-27 95.7 0.1 2.8e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.9 gi|147921549|ref|YP_684634.1| - 0.0072 15.9 0.0 0.88 9.0 0.0 3.1 1 1 0 1 1 1 1 Amidohydrolase PTE PF02126.13 gi|147921549|ref|YP_684634.1| - 0.034 13.1 0.1 0.17 10.8 0.0 2.1 2 0 0 2 2 2 0 Phosphotriesterase family PAS_9 PF13426.1 gi|147921550|ref|YP_684633.1| - 3.2e-09 37.0 0.0 5.4e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|147921550|ref|YP_684633.1| - 2.4e-05 24.3 0.0 0.00017 21.5 0.0 2.1 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|147921550|ref|YP_684633.1| - 2.5e-05 24.0 0.0 8.6e-05 22.2 0.0 1.9 1 1 0 1 1 1 1 PAS fold TIL PF01826.12 gi|147921550|ref|YP_684633.1| - 0.085 12.9 2.8 0.16 12.1 1.9 1.3 1 0 0 1 1 1 0 Trypsin Inhibitor like cysteine rich domain PTE PF02126.13 gi|147921550|ref|YP_684633.1| - 0.12 11.4 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Phosphotriesterase family PBP_like_2 PF12849.2 gi|147921551|ref|YP_684632.1| - 4.4e-24 85.4 0.6 5.5e-24 85.0 0.4 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|147921551|ref|YP_684632.1| - 1.4e-08 34.7 0.0 1.9e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.15 gi|147921551|ref|YP_684632.1| - 0.017 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain PBP_like PF12727.2 gi|147921551|ref|YP_684632.1| - 0.045 12.7 0.0 0.077 11.9 0.0 1.3 1 0 0 1 1 1 0 PBP superfamily domain CCG PF02754.11 gi|147921552|ref|YP_684631.1| - 6.2e-19 67.7 1.9 9.1e-14 51.2 0.0 2.8 2 1 0 2 2 2 2 Cysteine-rich domain APH PF01636.18 gi|147921553|ref|YP_684630.1| - 2e-10 40.7 0.0 1.1e-06 28.6 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|147921553|ref|YP_684630.1| - 6.8e-07 28.8 0.0 1.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|147921553|ref|YP_684630.1| - 0.063 12.3 0.0 0.13 11.3 0.0 1.6 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Phosphodiest PF01663.17 gi|147921554|ref|YP_684629.1| - 3.7e-11 42.9 0.1 1.7e-09 37.5 0.0 2.2 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|147921554|ref|YP_684629.1| - 3.6e-07 29.8 0.2 5.7e-07 29.1 0.2 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Alpha_E2_glycop PF00943.14 gi|147921554|ref|YP_684629.1| - 0.054 12.1 0.0 0.091 11.3 0.0 1.3 1 0 0 1 1 1 0 Alphavirus E2 glycoprotein PglZ PF08665.7 gi|147921554|ref|YP_684629.1| - 0.076 12.6 0.0 0.2 11.3 0.0 1.7 1 1 0 1 1 1 0 PglZ domain Paired_CXXCH_1 PF09699.5 gi|147921555|ref|YP_684628.1| - 0.07 12.6 0.5 0.13 11.8 0.3 1.3 1 0 0 1 1 1 0 Doubled CXXCH motif (Paired_CXXCH_1) Prokineticin PF06607.6 gi|147921555|ref|YP_684628.1| - 0.14 12.2 0.0 9.3 6.4 0.0 2.3 2 0 0 2 2 2 0 Prokineticin Oxidored_molyb PF00174.14 gi|147921556|ref|YP_684627.1| - 3e-13 49.5 0.0 3.1e-06 26.7 0.0 2.7 1 1 1 2 2 2 2 Oxidoreductase molybdopterin binding domain LPAM_1 PF08139.7 gi|147921556|ref|YP_684627.1| - 0.63 10.3 3.2 1.4 9.2 2.2 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site LPAM_2 PF13627.1 gi|147921556|ref|YP_684627.1| - 3.1 7.6 5.7 6.7 6.5 4.0 1.6 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site CbiQ PF02361.11 gi|147921557|ref|YP_684626.1| - 1.6e-33 116.1 13.4 1.6e-33 116.1 9.3 1.5 1 1 1 2 2 2 1 Cobalt transport protein DUF2556 PF10831.3 gi|147921557|ref|YP_684626.1| - 3.7 7.2 6.6 0.69 9.6 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2556) ABC_tran PF00005.22 gi|147921558|ref|YP_684625.1| - 3e-50 170.0 0.0 4.4e-24 85.3 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|147921558|ref|YP_684625.1| - 2.9e-20 73.4 2.8 5.8e-07 29.7 0.0 4.1 4 0 0 4 4 4 4 AAA domain SMC_N PF02463.14 gi|147921558|ref|YP_684625.1| - 5.1e-09 35.6 3.3 2.6e-05 23.5 0.1 3.7 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|147921558|ref|YP_684625.1| - 9.8e-09 35.8 0.2 0.0012 19.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|147921558|ref|YP_684625.1| - 2e-08 33.9 0.1 0.00058 19.3 0.0 3.7 4 0 0 4 4 3 1 AAA domain AAA_29 PF13555.1 gi|147921558|ref|YP_684625.1| - 2.9e-08 33.0 0.4 0.0014 18.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|147921558|ref|YP_684625.1| - 8.5e-07 28.5 0.4 0.0029 17.0 0.0 3.3 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|147921558|ref|YP_684625.1| - 4.3e-05 24.3 6.3 0.0028 18.4 0.1 3.2 3 0 0 3 3 2 1 AAA domain DUF258 PF03193.11 gi|147921558|ref|YP_684625.1| - 5.5e-05 22.4 0.1 0.024 13.8 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|147921558|ref|YP_684625.1| - 9.8e-05 22.5 5.1 0.061 13.4 0.1 3.5 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.1 gi|147921558|ref|YP_684625.1| - 0.00011 21.4 0.0 1.6 7.6 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain AAA_14 PF13173.1 gi|147921558|ref|YP_684625.1| - 0.00012 21.9 1.1 0.04 13.8 0.0 3.3 4 0 0 4 4 3 1 AAA domain SbcCD_C PF13558.1 gi|147921558|ref|YP_684625.1| - 0.00022 21.1 0.1 0.014 15.2 0.0 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|147921558|ref|YP_684625.1| - 0.00037 20.2 0.1 0.65 9.6 0.0 2.5 2 0 0 2 2 2 2 Archaeal ATPase AAA_18 PF13238.1 gi|147921558|ref|YP_684625.1| - 0.0004 20.6 3.0 0.15 12.3 0.1 3.7 3 1 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|147921558|ref|YP_684625.1| - 0.00043 19.9 4.0 0.28 10.8 0.1 2.4 2 0 0 2 2 2 2 NACHT domain AAA_16 PF13191.1 gi|147921558|ref|YP_684625.1| - 0.00062 19.8 5.0 0.019 14.9 0.0 3.4 4 0 0 4 4 3 1 AAA ATPase domain PhoH PF02562.11 gi|147921558|ref|YP_684625.1| - 0.00077 18.7 0.3 0.1 11.7 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein NB-ARC PF00931.17 gi|147921558|ref|YP_684625.1| - 0.00086 18.2 1.6 0.45 9.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PRK PF00485.13 gi|147921558|ref|YP_684625.1| - 0.001 18.6 2.3 0.52 9.8 0.2 3.2 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family T2SE PF00437.15 gi|147921558|ref|YP_684625.1| - 0.0012 17.8 0.0 0.64 8.8 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein KaiC PF06745.8 gi|147921558|ref|YP_684625.1| - 0.0013 17.9 2.9 0.21 10.6 0.0 2.9 4 0 0 4 4 3 1 KaiC NTPase_1 PF03266.10 gi|147921558|ref|YP_684625.1| - 0.0017 18.1 3.8 0.69 9.6 0.1 3.5 3 0 0 3 3 3 1 NTPase AAA_28 PF13521.1 gi|147921558|ref|YP_684625.1| - 0.0018 18.2 0.2 0.09 12.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|147921558|ref|YP_684625.1| - 0.002 17.8 1.8 0.07 12.8 0.1 2.8 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|147921558|ref|YP_684625.1| - 0.002 17.9 1.5 0.71 9.7 0.6 2.8 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|147921558|ref|YP_684625.1| - 0.0023 16.5 0.1 3 6.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain ArgK PF03308.11 gi|147921558|ref|YP_684625.1| - 0.003 16.3 1.0 0.76 8.5 0.2 2.3 2 0 0 2 2 2 1 ArgK protein UPF0079 PF02367.12 gi|147921558|ref|YP_684625.1| - 0.003 17.1 0.5 3.2 7.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|147921558|ref|YP_684625.1| - 0.0046 17.4 1.2 0.45 11.0 0.0 2.8 3 0 0 3 3 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|147921558|ref|YP_684625.1| - 0.0051 16.7 0.1 2.7 7.9 0.0 2.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|147921558|ref|YP_684625.1| - 0.0051 16.4 0.6 2.9 7.4 0.1 2.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|147921558|ref|YP_684625.1| - 0.0084 16.2 0.8 0.55 10.4 0.0 2.6 2 0 0 2 2 2 1 RNA helicase ATP-synt_ab PF00006.20 gi|147921558|ref|YP_684625.1| - 0.01 15.3 0.1 4.7 6.6 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|147921558|ref|YP_684625.1| - 0.014 15.0 0.4 1.7 8.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|147921558|ref|YP_684625.1| - 0.02 14.0 0.5 0.41 9.7 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|147921558|ref|YP_684625.1| - 0.025 14.1 1.9 4.3 6.8 0.1 2.9 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.10 gi|147921558|ref|YP_684625.1| - 0.026 13.2 0.0 0.043 12.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein MutS_V PF00488.16 gi|147921558|ref|YP_684625.1| - 0.044 13.1 0.0 0.48 9.8 0.0 2.1 2 0 0 2 2 2 0 MutS domain V ABC_ATPase PF09818.4 gi|147921558|ref|YP_684625.1| - 0.064 11.8 6.0 0.21 10.1 0.1 3.4 3 1 0 3 3 3 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|147921558|ref|YP_684625.1| - 0.066 13.4 3.0 0.48 10.6 0.1 3.2 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|147921558|ref|YP_684625.1| - 0.073 12.7 5.1 3.6 7.2 0.3 3.0 3 1 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|147921558|ref|YP_684625.1| - 0.077 12.4 0.1 6.8 6.1 0.1 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family APS_kinase PF01583.15 gi|147921558|ref|YP_684625.1| - 0.092 12.3 0.6 0.51 9.9 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_10 PF12846.2 gi|147921558|ref|YP_684625.1| - 0.11 11.9 6.9 0.73 9.2 0.1 3.1 3 0 0 3 3 3 0 AAA-like domain RecA PF00154.16 gi|147921558|ref|YP_684625.1| - 0.14 11.2 0.4 6.1 5.8 0.0 2.3 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Sigma54_activat PF00158.21 gi|147921558|ref|YP_684625.1| - 0.14 11.6 0.1 3 7.3 0.0 2.6 3 0 0 3 3 2 0 Sigma-54 interaction domain DLIC PF05783.6 gi|147921558|ref|YP_684625.1| - 0.25 9.9 0.1 0.45 9.1 0.1 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) cobW PF02492.14 gi|147921558|ref|YP_684625.1| - 0.27 10.6 7.4 0.48 9.8 0.3 3.0 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|147921558|ref|YP_684625.1| - 0.36 10.2 3.0 0.44 9.9 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|147921558|ref|YP_684625.1| - 0.57 9.6 3.2 1.4 8.4 0.3 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ABC_cobalt PF09819.4 gi|147921559|ref|YP_684624.1| - 1.3e-21 76.8 13.2 1.3e-21 76.8 9.2 2.5 3 0 0 3 3 3 1 ABC-type cobalt transport system, permease component Oxidored_molyb PF00174.14 gi|147921559|ref|YP_684624.1| - 0.014 14.8 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase molybdopterin binding domain Solute_trans_a PF03619.11 gi|147921559|ref|YP_684624.1| - 1.2 8.4 5.7 0.087 12.1 0.4 1.6 2 0 0 2 2 2 0 Organic solute transporter Ostalpha Cytochrom_C_asm PF01578.15 gi|147921560|ref|YP_684623.1| - 7.8e-43 146.5 15.3 7.8e-43 146.5 10.6 1.4 2 0 0 2 2 2 1 Cytochrome C assembly protein 7TMR-DISM_7TM PF07695.6 gi|147921560|ref|YP_684623.1| - 0.003 17.2 21.4 0.013 15.1 4.0 2.1 1 1 1 2 2 2 2 7TM diverse intracellular signalling 7TM_GPCR_Srh PF10318.4 gi|147921560|ref|YP_684623.1| - 0.03 13.1 0.2 0.03 13.1 0.2 1.5 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srh E1-E2_ATPase PF00122.15 gi|147921560|ref|YP_684623.1| - 8.8 5.2 7.3 12 4.8 0.1 2.5 2 1 0 2 2 2 0 E1-E2 ATPase Metallophos_2 PF12850.2 gi|147921561|ref|YP_684622.1| - 1.9e-12 47.3 0.0 2.3e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|147921561|ref|YP_684622.1| - 8.3e-07 28.6 0.3 1.8e-06 27.5 0.0 1.6 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|147921561|ref|YP_684622.1| - 0.0011 18.1 0.1 0.021 13.9 0.0 2.2 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Ribosomal_S5 PF00333.15 gi|147921561|ref|YP_684622.1| - 0.038 13.7 0.2 0.064 13.0 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S5, N-terminal domain ABC2_membrane_3 PF12698.2 gi|147921562|ref|YP_684621.1| - 4.3e-49 167.3 34.8 5.2e-49 167.1 24.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|147921562|ref|YP_684621.1| - 1e-31 109.7 37.6 4.3e-30 104.4 16.9 3.2 3 1 0 3 3 3 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|147921562|ref|YP_684621.1| - 2.5e-18 65.9 20.7 5.1e-18 64.9 14.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921562|ref|YP_684621.1| - 6e-10 38.6 25.3 1.1e-09 37.7 17.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.8 gi|147921562|ref|YP_684621.1| - 1.4 8.0 24.9 0.0097 15.1 9.3 2.7 3 1 0 3 3 3 0 CcmB protein ABC_tran PF00005.22 gi|147921563|ref|YP_684620.1| - 2.6e-30 105.5 0.0 4.2e-30 104.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921563|ref|YP_684620.1| - 2.2e-15 57.3 0.1 4.8e-10 39.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|147921563|ref|YP_684620.1| - 2.6e-06 26.7 0.0 0.00076 18.6 0.0 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|147921563|ref|YP_684620.1| - 0.00018 21.8 2.8 0.00053 20.3 2.1 1.7 1 1 1 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|147921563|ref|YP_684620.1| - 0.0013 19.1 0.0 0.003 18.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|147921563|ref|YP_684620.1| - 0.0018 17.7 0.3 1.1 8.5 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|147921563|ref|YP_684620.1| - 0.0027 17.1 0.0 0.0064 15.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|147921563|ref|YP_684620.1| - 0.014 15.5 0.8 0.19 11.9 0.5 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|147921563|ref|YP_684620.1| - 0.022 13.9 0.0 0.043 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|147921563|ref|YP_684620.1| - 0.034 14.0 0.2 0.12 12.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain Cellulase PF00150.13 gi|147921563|ref|YP_684620.1| - 0.046 12.9 0.4 0.11 11.6 0.0 1.7 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) MobB PF03205.9 gi|147921563|ref|YP_684620.1| - 0.06 13.0 0.1 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|147921563|ref|YP_684620.1| - 0.12 12.5 0.6 1.2 9.2 0.2 2.4 1 1 1 2 2 2 0 AAA domain PadR PF03551.9 gi|147921564|ref|YP_684619.1| - 7.4e-20 70.5 0.0 1e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF3116 PF11313.3 gi|147921564|ref|YP_684619.1| - 0.00049 19.6 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_27 PF13463.1 gi|147921564|ref|YP_684619.1| - 0.00049 20.3 0.0 0.00099 19.3 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|147921564|ref|YP_684619.1| - 0.00077 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|147921564|ref|YP_684619.1| - 0.00093 18.9 0.0 0.0021 17.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|147921564|ref|YP_684619.1| - 0.0023 17.5 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|147921564|ref|YP_684619.1| - 0.024 14.3 0.1 0.12 12.0 0.0 2.2 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|147921564|ref|YP_684619.1| - 0.048 13.7 0.0 0.07 13.2 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor HATPase_c PF02518.21 gi|147921565|ref|YP_684618.1| - 4.9e-19 68.1 0.1 1.5e-17 63.3 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147921565|ref|YP_684618.1| - 3.7e-14 52.7 0.6 6.4e-07 29.3 0.0 3.2 3 1 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|147921565|ref|YP_684618.1| - 2.3e-09 37.5 0.0 0.00049 20.4 0.0 3.2 3 1 0 3 3 3 2 PAS domain PAS PF00989.19 gi|147921565|ref|YP_684618.1| - 3.7e-08 33.1 0.0 0.029 14.1 0.0 3.7 3 1 0 3 3 3 2 PAS fold PAS_10 PF13596.1 gi|147921565|ref|YP_684618.1| - 6.1e-08 32.8 0.0 0.00037 20.7 0.0 2.8 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.1 gi|147921565|ref|YP_684618.1| - 8.4e-07 28.6 0.0 0.031 14.1 0.0 2.7 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|147921565|ref|YP_684618.1| - 0.00057 19.8 0.1 0.0015 18.4 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF1021 PF06257.6 gi|147921565|ref|YP_684618.1| - 0.0078 15.8 0.2 5.2 6.8 0.0 3.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1021) HATPase_c_5 PF14501.1 gi|147921565|ref|YP_684618.1| - 0.044 13.4 0.0 0.14 11.9 0.0 1.8 2 0 0 2 2 2 0 GHKL domain PAS_7 PF12860.2 gi|147921565|ref|YP_684618.1| - 0.08 12.9 0.0 29 4.7 0.0 3.3 3 0 0 3 3 3 0 PAS fold HATPase_c_2 PF13581.1 gi|147921565|ref|YP_684618.1| - 0.097 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain DUF3659 PF12396.3 gi|147921565|ref|YP_684618.1| - 0.1 12.2 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) MethyltransfD12 PF02086.10 gi|147921567|ref|YP_684616.1| - 2e-58 197.8 1.3 2.5e-58 197.5 0.9 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_26 PF13659.1 gi|147921567|ref|YP_684616.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain HHH_4 PF14490.1 gi|147921568|ref|YP_684615.1| - 0.012 15.4 0.0 0.035 13.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain Fasciclin PF02469.17 gi|147921569|ref|YP_684614.1| - 9.7e-11 41.7 0.1 1.3e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain Fasciclin PF02469.17 gi|147921570|ref|YP_684613.1| - 1.4e-12 47.7 0.0 2.5e-12 46.9 0.0 1.3 1 1 0 1 1 1 1 Fasciclin domain DUF4098 PF13345.1 gi|147921570|ref|YP_684613.1| - 0.029 14.3 0.4 0.058 13.3 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4098) TrbC PF04956.8 gi|147921570|ref|YP_684613.1| - 0.29 11.1 3.8 0.51 10.3 2.4 1.7 1 1 0 1 1 1 0 TrbC/VIRB2 family DUF2946 PF11162.3 gi|147921570|ref|YP_684613.1| - 0.95 9.6 5.9 0.38 10.9 2.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) PepSY_2 PF13670.1 gi|147921570|ref|YP_684613.1| - 1.2 9.0 4.4 3 7.8 2.7 1.9 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Fasciclin PF02469.17 gi|147921571|ref|YP_684612.1| - 7.9e-16 58.2 0.1 2e-15 56.8 0.0 1.5 1 1 1 2 2 2 1 Fasciclin domain Arf PF00025.16 gi|147921571|ref|YP_684612.1| - 0.0021 17.3 0.4 0.079 12.1 0.0 2.2 1 1 1 2 2 2 1 ADP-ribosylation factor family DUF2946 PF11162.3 gi|147921571|ref|YP_684612.1| - 0.6 10.3 17.0 1.9 8.6 11.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2946) PepSY_2 PF13670.1 gi|147921571|ref|YP_684612.1| - 5.3 7.0 6.1 2.5 8.0 1.8 2.0 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain PDDEXK_3 PF13366.1 gi|147921572|ref|YP_684611.1| - 6.1e-37 126.2 1.7 7.1e-37 126.0 1.2 1.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|147921572|ref|YP_684611.1| - 0.07 12.9 0.1 0.09 12.5 0.0 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Tox-REase-7 PF15649.1 gi|147921572|ref|YP_684611.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 7 UvrD-helicase PF00580.16 gi|147921573|ref|YP_684610.1| - 6.2e-56 189.9 0.1 1.4e-55 188.8 0.1 1.6 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|147921573|ref|YP_684610.1| - 3.6e-52 177.9 0.0 1.9e-51 175.6 0.0 2.1 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|147921573|ref|YP_684610.1| - 2.5e-36 125.3 0.4 2.5e-36 125.3 0.3 2.7 3 1 0 3 3 3 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|147921573|ref|YP_684610.1| - 3.8e-13 48.9 0.9 1.6e-12 47.0 0.1 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|147921573|ref|YP_684610.1| - 4.5e-11 42.7 0.0 1.9e-06 27.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain UvrD_C_2 PF13538.1 gi|147921573|ref|YP_684610.1| - 7e-09 35.7 0.3 3.6e-07 30.2 0.2 3.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain PhoH PF02562.11 gi|147921573|ref|YP_684610.1| - 8.4e-06 25.1 0.0 0.055 12.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_11 PF13086.1 gi|147921573|ref|YP_684610.1| - 1.4e-05 24.7 0.1 0.00012 21.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|147921573|ref|YP_684610.1| - 0.00019 21.0 0.3 4.6 6.6 0.0 4.2 4 0 0 4 4 4 1 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|147921573|ref|YP_684610.1| - 0.0013 18.7 2.0 1.5 8.7 0.0 3.7 5 0 0 5 5 5 2 AAA ATPase domain ResIII PF04851.10 gi|147921573|ref|YP_684610.1| - 0.0053 16.6 0.3 0.44 10.3 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|147921573|ref|YP_684610.1| - 0.0082 15.6 0.6 0.25 10.8 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|147921573|ref|YP_684610.1| - 0.022 14.8 0.8 4.1 7.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain DUF3799 PF12684.2 gi|147921573|ref|YP_684610.1| - 0.025 13.9 0.0 0.055 12.8 0.0 1.6 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) TPR_11 PF13414.1 gi|147921574|ref|YP_684609.1| - 2.7e-59 196.7 22.0 1.5e-13 50.1 0.5 7.1 5 2 1 7 7 7 6 TPR repeat TPR_2 PF07719.12 gi|147921574|ref|YP_684609.1| - 1.6e-47 155.6 17.8 2e-06 27.2 0.0 12.0 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147921574|ref|YP_684609.1| - 3.2e-43 143.6 16.0 2.7e-06 26.7 0.1 12.0 12 0 0 12 12 12 7 Tetratricopeptide repeat TPR_16 PF13432.1 gi|147921574|ref|YP_684609.1| - 1.4e-42 143.4 19.5 9.2e-09 35.7 0.5 6.6 3 2 1 6 6 6 6 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147921574|ref|YP_684609.1| - 8.5e-41 134.7 16.2 8.6e-06 25.5 0.1 9.3 9 0 0 9 9 9 7 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147921574|ref|YP_684609.1| - 1.2e-31 106.3 22.2 1.2e-06 28.5 0.0 11.1 2 2 9 11 11 11 10 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147921574|ref|YP_684609.1| - 1.9e-30 104.5 22.0 1.8e-06 27.8 0.2 7.1 2 2 5 7 7 7 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147921574|ref|YP_684609.1| - 5.3e-30 103.5 24.2 4.9e-08 33.1 0.4 7.7 3 3 4 7 7 7 7 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147921574|ref|YP_684609.1| - 2.9e-29 98.6 7.2 0.0023 17.5 0.0 10.9 7 3 5 12 12 11 5 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147921574|ref|YP_684609.1| - 2.6e-21 74.5 5.9 0.16 12.4 0.0 10.0 10 0 0 10 10 10 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|147921574|ref|YP_684609.1| - 3.9e-20 69.9 10.1 0.0081 15.8 0.0 9.9 9 1 1 10 10 10 4 Tetratricopeptide repeat TPR_20 PF14561.1 gi|147921574|ref|YP_684609.1| - 5.9e-17 61.5 5.2 0.053 13.6 0.0 6.1 5 2 2 7 7 7 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|147921574|ref|YP_684609.1| - 5.5e-13 48.5 17.7 0.007 16.1 0.2 6.5 2 2 4 6 6 6 5 Tetratricopeptide repeat Apc3 PF12895.2 gi|147921574|ref|YP_684609.1| - 3.4e-12 46.3 11.8 2.3e-05 24.4 0.1 5.0 3 2 2 6 6 6 3 Anaphase-promoting complex, cyclosome, subunit 3 BTAD PF03704.12 gi|147921574|ref|YP_684609.1| - 1.7e-10 41.3 15.3 6.9e-05 23.1 0.2 4.6 3 1 2 5 5 5 4 Bacterial transcriptional activator domain TPR_4 PF07721.9 gi|147921574|ref|YP_684609.1| - 4.3e-10 39.0 17.4 1.5 9.4 0.0 8.6 8 0 0 8 8 8 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|147921574|ref|YP_684609.1| - 4e-09 35.7 0.3 0.36 9.5 0.0 4.8 3 2 1 5 5 5 2 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|147921574|ref|YP_684609.1| - 1.4e-06 27.6 2.7 0.0005 19.2 0.0 3.6 2 1 2 4 4 4 1 Tetratricopeptide repeat TOM20_plant PF06552.7 gi|147921574|ref|YP_684609.1| - 5.1e-06 26.2 0.1 2.8 7.5 0.0 5.9 4 3 3 7 7 7 1 Plant specific mitochondrial import receptor subunit TOM20 TPR_21 PF09976.4 gi|147921574|ref|YP_684609.1| - 0.0023 17.8 5.2 0.16 11.8 0.1 4.2 4 3 0 4 4 4 1 Tetratricopeptide repeat Apc5 PF12862.2 gi|147921574|ref|YP_684609.1| - 0.0032 17.2 1.1 30 4.5 0.1 4.8 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 5 TPR_10 PF13374.1 gi|147921574|ref|YP_684609.1| - 0.015 15.2 25.9 0.99 9.4 0.0 7.0 7 0 0 7 7 6 0 Tetratricopeptide repeat FAT PF02259.18 gi|147921574|ref|YP_684609.1| - 0.016 14.2 0.0 2.7 6.9 0.0 3.0 3 1 1 4 4 4 0 FAT domain MIT PF04212.13 gi|147921574|ref|YP_684609.1| - 0.027 14.3 6.8 34 4.4 0.1 6.4 6 1 1 7 7 7 0 MIT (microtubule interacting and transport) domain KorB PF08535.5 gi|147921574|ref|YP_684609.1| - 0.041 14.0 0.0 19 5.4 0.0 3.6 3 1 1 4 4 4 0 KorB domain Sel1 PF08238.7 gi|147921574|ref|YP_684609.1| - 0.32 11.7 0.1 0.32 11.7 0.1 6.1 6 1 1 7 7 6 0 Sel1 repeat SHNi-TPR PF10516.4 gi|147921574|ref|YP_684609.1| - 0.33 10.2 4.0 17 4.7 0.0 4.3 6 0 0 6 6 5 0 SHNi-TPR Fis1_TPR_C PF14853.1 gi|147921574|ref|YP_684609.1| - 0.41 10.5 4.2 31 4.5 0.0 4.6 5 1 1 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat CpXC PF14353.1 gi|147921575|ref|YP_684608.1| - 2.9e-20 72.5 0.1 3.4e-20 72.3 0.1 1.1 1 0 0 1 1 1 1 CpXC protein Terminase_GpA PF05876.7 gi|147921575|ref|YP_684608.1| - 0.12 10.6 0.1 0.15 10.4 0.1 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) tRNA-synt_1c PF00749.16 gi|147921576|ref|YP_684607.1| - 1.2e-60 204.8 0.0 1.5e-60 204.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|147921576|ref|YP_684607.1| - 7.9e-26 90.7 0.0 1.9e-25 89.5 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), anti-codon binding domain MFS_1 PF07690.11 gi|147921578|ref|YP_684605.1| - 4.3e-61 206.5 51.6 4.3e-61 206.5 35.8 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|147921578|ref|YP_684605.1| - 2.5e-11 42.8 33.6 6e-09 34.9 7.9 3.0 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|147921578|ref|YP_684605.1| - 1.7e-07 29.7 25.3 4.1e-05 21.9 6.7 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|147921578|ref|YP_684605.1| - 0.0021 16.5 10.9 0.0021 16.5 7.6 3.4 2 2 1 3 3 3 2 MFS/sugar transport protein TrmB PF01978.14 gi|147921579|ref|YP_684604.1| - 2.4e-19 68.8 0.4 2.4e-19 68.8 0.3 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|147921579|ref|YP_684604.1| - 0.0073 15.9 0.0 0.023 14.3 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|147921579|ref|YP_684604.1| - 0.047 14.0 0.0 0.13 12.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|147921579|ref|YP_684604.1| - 0.11 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_9 PF08221.6 gi|147921579|ref|YP_684604.1| - 0.12 12.3 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain tRNA-synt_1 PF00133.17 gi|147921580|ref|YP_684603.1| - 3.1e-124 415.2 0.0 1.7e-123 412.7 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|147921580|ref|YP_684603.1| - 2.1e-40 138.0 0.2 3.2e-40 137.3 0.2 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|147921580|ref|YP_684603.1| - 1.5e-21 76.4 0.0 2.9e-11 42.6 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|147921580|ref|YP_684603.1| - 1.3e-05 24.6 0.0 8.2e-05 21.9 0.0 2.1 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|147921580|ref|YP_684603.1| - 0.0026 16.9 0.0 0.11 11.6 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Lar_restr_allev PF14354.1 gi|147921580|ref|YP_684603.1| - 0.0092 16.2 1.5 0.6 10.4 0.1 3.4 3 0 0 3 3 3 1 Restriction alleviation protein Lar HypA PF01155.14 gi|147921580|ref|YP_684603.1| - 0.041 13.5 0.1 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|147921580|ref|YP_684603.1| - 0.053 13.3 1.1 2.7 7.8 0.1 2.8 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|147921580|ref|YP_684603.1| - 0.054 12.9 0.0 0.4 10.2 0.0 2.5 2 1 0 2 2 2 0 zinc-ribbon domain DUF4013 PF13197.1 gi|147921581|ref|YP_684602.1| - 3.6 6.8 36.3 4.2 6.6 7.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) DUF1129 PF06570.6 gi|147921581|ref|YP_684602.1| - 4.6 6.4 18.4 0.32 10.2 0.9 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1129) DUF373 PF04123.8 gi|147921581|ref|YP_684602.1| - 7.3 5.4 19.5 9.8 5.0 13.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) TMP_2 PF06791.8 gi|147921581|ref|YP_684602.1| - 8.2 5.9 9.0 8.7 5.8 5.2 1.8 1 1 1 2 2 2 0 Prophage tail length tape measure protein CarboxypepD_reg PF13620.1 gi|147921583|ref|YP_684600.1| - 0.006 16.6 2.6 0.019 14.9 1.8 2.0 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921583|ref|YP_684600.1| - 0.23 11.5 1.3 0.28 11.2 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) DNA_primase_S PF01896.14 gi|147921584|ref|YP_684599.1| - 1.2e-27 96.4 0.0 1.9e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Sigma54_CBD PF04963.8 gi|147921584|ref|YP_684599.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain AAA_5 PF07728.9 gi|147921585|ref|YP_684598.1| - 0.023 14.4 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Ribosomal_L44 PF00935.14 gi|147921586|ref|YP_684597.1| - 2.7e-27 94.5 8.0 4.4e-27 93.9 5.5 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 DUF2296 PF10058.4 gi|147921586|ref|YP_684597.1| - 0.017 14.8 1.5 3.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) C1_4 PF07975.7 gi|147921586|ref|YP_684597.1| - 0.21 11.5 2.5 1.2 9.2 0.1 2.2 2 0 0 2 2 2 0 TFIIH C1-like domain Zn-ribbon_8 PF09723.5 gi|147921586|ref|YP_684597.1| - 2.4 8.1 6.1 16 5.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|147921586|ref|YP_684597.1| - 3.6 7.1 8.4 8.1 6.0 0.1 2.6 3 0 0 3 3 3 0 InsA N-terminal domain Ribosomal_S27e PF01667.12 gi|147921587|ref|YP_684596.1| - 2.4e-24 84.6 0.5 2.6e-24 84.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn_Tnp_IS91 PF14319.1 gi|147921587|ref|YP_684596.1| - 0.0073 15.7 0.1 0.0073 15.7 0.1 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain ZZ PF00569.12 gi|147921587|ref|YP_684596.1| - 0.038 13.5 1.2 1 8.9 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type HypA PF01155.14 gi|147921587|ref|YP_684596.1| - 0.048 13.3 0.4 0.056 13.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|147921587|ref|YP_684596.1| - 0.052 13.7 0.4 0.067 13.3 0.3 1.1 1 0 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|147921587|ref|YP_684596.1| - 0.052 13.5 1.1 0.081 12.8 0.8 1.2 1 0 0 1 1 1 0 Zinc ribbon domain C1_1 PF00130.17 gi|147921587|ref|YP_684596.1| - 0.078 12.7 0.3 0.1 12.3 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE PF01363.16 gi|147921587|ref|YP_684596.1| - 0.087 12.7 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 FYVE zinc finger Sgf11 PF08209.6 gi|147921587|ref|YP_684596.1| - 0.087 12.1 3.3 0.36 10.1 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2_3 PF13878.1 gi|147921587|ref|YP_684596.1| - 0.14 11.7 1.1 5.5 6.6 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO A2L_zn_ribbon PF08792.5 gi|147921587|ref|YP_684596.1| - 0.2 11.1 1.9 11 5.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_6 PF14599.1 gi|147921587|ref|YP_684596.1| - 0.44 10.3 3.2 1 9.1 2.3 1.7 1 1 0 1 1 1 0 Zinc-ribbon DUF3797 PF12677.2 gi|147921587|ref|YP_684596.1| - 0.52 9.9 3.9 1.1 8.9 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_4 PF13717.1 gi|147921587|ref|YP_684596.1| - 0.73 9.5 5.6 6 6.6 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|147921587|ref|YP_684596.1| - 0.91 9.1 5.4 5.9 6.5 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|147921588|ref|YP_684595.1| - 9.4e-28 96.2 0.0 1.6e-27 95.4 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|147921588|ref|YP_684595.1| - 3.9e-13 49.2 0.1 8e-13 48.2 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain MBT PF02820.13 gi|147921588|ref|YP_684595.1| - 0.057 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 mbt repeat Nop10p PF04135.7 gi|297616213|ref|YP_003710352.1| - 7e-21 73.7 2.8 8.1e-21 73.5 2.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-FPG_IleRS PF06827.9 gi|297616213|ref|YP_003710352.1| - 0.013 15.1 0.5 0.02 14.5 0.4 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS RecR PF02132.10 gi|297616213|ref|YP_003710352.1| - 0.033 13.6 2.0 0.043 13.2 1.4 1.2 1 0 0 1 1 1 0 RecR protein YhfH PF14149.1 gi|297616213|ref|YP_003710352.1| - 0.11 12.3 3.6 0.15 11.8 2.5 1.3 1 0 0 1 1 1 0 YhfH-like protein PAC2 PF09754.4 gi|147921589|ref|YP_684594.1| - 1.6e-52 178.5 0.0 1.9e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family NADH_u_ox_C PF12853.2 gi|147921590|ref|YP_684593.1| - 0.14 11.8 0.3 0.39 10.4 0.0 1.7 1 1 1 2 2 2 0 C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit KH_1 PF00013.24 gi|147921591|ref|YP_684592.1| - 1.9e-17 62.6 12.1 6.6e-09 35.2 0.5 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|147921591|ref|YP_684592.1| - 2.1e-09 36.8 14.0 0.00021 20.8 0.5 2.6 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|147921591|ref|YP_684592.1| - 0.017 14.6 9.6 0.082 12.4 1.6 2.5 2 1 0 2 2 2 0 KH domain KH_5 PF13184.1 gi|147921591|ref|YP_684592.1| - 0.95 9.3 4.3 13 5.7 0.2 2.5 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.1 gi|147921591|ref|YP_684592.1| - 1.2 8.7 8.0 2.7 7.6 0.8 3.2 2 1 1 3 3 3 0 KH domain RIO1 PF01163.17 gi|147921592|ref|YP_684591.1| - 1e-68 230.4 0.1 1.3e-68 230.0 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|147921592|ref|YP_684591.1| - 3.5e-06 26.3 0.0 5.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|147921592|ref|YP_684591.1| - 0.0002 21.1 0.2 0.39 10.4 0.0 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|147921592|ref|YP_684591.1| - 0.00031 19.8 0.1 0.7 8.9 0.0 2.2 2 0 0 2 2 2 2 Lipopolysaccharide kinase (Kdo/WaaP) family Epimerase PF01370.16 gi|147921593|ref|YP_684590.1| - 3e-46 157.7 0.0 3.5e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|147921593|ref|YP_684590.1| - 1.4e-15 56.7 0.0 1.6e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|147921593|ref|YP_684590.1| - 3.2e-15 55.8 0.0 3.3e-14 52.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|147921593|ref|YP_684590.1| - 3.6e-15 55.5 0.0 4.3e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|147921593|ref|YP_684590.1| - 3.8e-12 45.6 0.1 2.7e-07 29.7 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|147921593|ref|YP_684590.1| - 1.8e-10 41.1 0.0 2.6e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|147921593|ref|YP_684590.1| - 0.0017 17.6 0.0 0.0028 16.9 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|147921593|ref|YP_684590.1| - 0.0049 16.7 0.3 0.0049 16.7 0.2 2.1 2 1 0 2 2 2 1 short chain dehydrogenase NAD_binding_7 PF13241.1 gi|147921593|ref|YP_684590.1| - 0.021 15.0 0.0 0.037 14.2 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|147921593|ref|YP_684590.1| - 0.096 12.0 0.2 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PK PF00224.16 gi|147921594|ref|YP_684589.1| - 3e-129 430.5 7.3 4.9e-129 429.8 5.0 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|147921594|ref|YP_684589.1| - 2.4e-36 123.8 0.1 5.1e-36 122.7 0.1 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|147921594|ref|YP_684589.1| - 3.5e-19 68.1 2.5 1.8e-18 65.8 0.4 3.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|147921594|ref|YP_684589.1| - 0.00079 18.3 1.8 0.00079 18.3 1.2 2.1 3 1 0 3 3 3 1 HpcH/HpaI aldolase/citrate lyase family DUF3006 PF11213.3 gi|147921594|ref|YP_684589.1| - 0.035 13.8 0.3 0.59 9.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) CarboxypepD_reg PF13620.1 gi|147921595|ref|YP_684588.1| - 9.4e-15 54.4 1.7 2.5e-08 33.8 0.1 3.6 2 2 0 2 2 2 2 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.16 gi|147921595|ref|YP_684588.1| - 0.00045 19.5 0.0 0.0013 18.0 0.0 1.8 3 0 0 3 3 3 1 Dioxygenase DUF2012 PF09430.5 gi|147921595|ref|YP_684588.1| - 0.0037 17.0 0.0 0.068 13.0 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2012) LEA_5 PF00477.12 gi|147921596|ref|YP_684587.1| - 0.0022 18.2 5.9 0.0027 17.9 4.1 1.2 1 0 0 1 1 1 1 Small hydrophilic plant seed protein SASP PF00269.15 gi|147921596|ref|YP_684587.1| - 0.082 12.7 8.4 0.17 11.7 1.3 2.1 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type KGG PF10685.4 gi|147921596|ref|YP_684587.1| - 0.4 10.6 9.6 1.7 8.7 0.1 3.0 3 0 0 3 3 3 0 Stress-induced bacterial acidophilic repeat motif TGT PF01702.13 gi|147921597|ref|YP_684586.1| - 7.9e-20 71.1 0.0 1.4e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|147921597|ref|YP_684586.1| - 4.9e-14 51.8 0.1 1.2e-13 50.6 0.1 1.6 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|147921597|ref|YP_684586.1| - 8e-13 48.0 0.2 4.3e-12 45.7 0.0 2.2 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Radical_SAM PF04055.16 gi|147921598|ref|YP_684585.1| - 4.8e-06 26.8 0.0 1.1e-05 25.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily ACT PF01842.20 gi|147921599|ref|YP_684584.1| - 0.0023 17.3 0.4 0.0079 15.6 0.2 2.0 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|147921599|ref|YP_684584.1| - 0.29 11.5 3.1 6.1 7.2 0.1 3.1 3 0 0 3 3 3 0 ACT domain NinE PF05322.6 gi|147921600|ref|YP_684583.1| - 0.052 13.2 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 NINE Protein HD PF01966.17 gi|147921601|ref|YP_684582.1| - 8.1e-15 54.9 1.6 1.3e-14 54.2 1.1 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|147921601|ref|YP_684582.1| - 0.039 13.2 0.1 0.35 10.1 0.1 2.0 1 1 0 1 1 1 0 HDOD domain TFIIE_alpha PF02002.12 gi|147921602|ref|YP_684581.1| - 9.4e-21 73.2 3.0 1.5e-20 72.6 2.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit DUF3734 PF12536.3 gi|147921602|ref|YP_684581.1| - 0.41 10.7 2.1 42 4.3 0.0 2.9 3 0 0 3 3 3 0 Patatin phospholipase Pox_A_type_inc PF04508.7 gi|147921602|ref|YP_684581.1| - 1.9 8.4 6.8 2.7 7.9 0.2 2.6 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat ATP-grasp_3 PF02655.9 gi|147921603|ref|YP_684580.1| - 6.1e-37 126.9 0.0 9.1e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|147921603|ref|YP_684580.1| - 7.2e-13 48.6 0.0 1.7e-12 47.4 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|147921603|ref|YP_684580.1| - 2.1e-08 33.2 0.0 1.5e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|147921603|ref|YP_684580.1| - 1.7e-05 24.2 0.0 0.0035 16.6 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|147921603|ref|YP_684580.1| - 0.0048 16.0 0.0 0.56 9.2 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp RimK PF08443.6 gi|147921603|ref|YP_684580.1| - 0.0095 15.4 0.0 0.22 10.9 0.0 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Trm56 PF01994.11 gi|147921604|ref|YP_684579.1| - 3.7e-50 168.7 0.0 4.6e-50 168.4 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SpoU_methylase PF00588.14 gi|147921604|ref|YP_684579.1| - 0.04 13.8 0.0 0.054 13.3 0.0 1.2 1 0 0 1 1 1 0 SpoU rRNA Methylase family His_biosynth PF00977.16 gi|147921604|ref|YP_684579.1| - 0.075 12.2 0.0 0.092 11.9 0.0 1.1 1 0 0 1 1 1 0 Histidine biosynthesis protein RNA_pol_L_2 PF13656.1 gi|147921605|ref|YP_684578.1| - 2.8e-22 77.9 0.1 3.4e-22 77.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|147921605|ref|YP_684578.1| - 7.8e-10 37.7 0.0 1e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Lipocalin_6 PF13944.1 gi|147921605|ref|YP_684578.1| - 0.1 12.7 0.3 0.16 12.1 0.2 1.3 1 1 0 1 1 1 0 Lipocalin-like domain ECR1_N PF14382.1 gi|147921606|ref|YP_684577.1| - 2e-15 55.7 0.1 3.3e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|147921606|ref|YP_684577.1| - 0.0001 22.1 0.5 0.00028 20.7 0.3 1.8 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|147921606|ref|YP_684577.1| - 0.00025 21.0 0.9 0.048 13.7 0.7 2.4 1 1 0 1 1 1 1 S1 RNA binding domain HypA PF01155.14 gi|147921606|ref|YP_684577.1| - 0.039 13.6 0.1 0.057 13.1 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|147921606|ref|YP_684577.1| - 0.12 12.2 2.7 0.18 11.6 1.9 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Methyltransf_26 PF13659.1 gi|147921607|ref|YP_684576.1| - 7.7e-14 51.7 0.0 1.1e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147921607|ref|YP_684576.1| - 1.6e-12 47.1 0.2 4.4e-12 45.6 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|147921607|ref|YP_684576.1| - 2.3e-11 43.4 0.0 2.7e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921607|ref|YP_684576.1| - 5e-10 39.9 0.1 7.9e-10 39.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|147921607|ref|YP_684576.1| - 8.1e-10 38.5 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|147921607|ref|YP_684576.1| - 2.1e-08 34.4 0.0 4.3e-08 33.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.8 gi|147921607|ref|YP_684576.1| - 2.7e-08 33.2 1.3 4e-08 32.7 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) N6_Mtase PF02384.11 gi|147921607|ref|YP_684576.1| - 3.7e-07 29.5 0.0 4.7e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.5 gi|147921607|ref|YP_684576.1| - 1.9e-06 27.5 0.0 3.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|147921607|ref|YP_684576.1| - 0.00038 19.8 0.0 0.00088 18.7 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|147921607|ref|YP_684576.1| - 0.0004 20.0 0.0 0.0005 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147921607|ref|YP_684576.1| - 0.00045 20.6 0.1 0.0014 19.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921607|ref|YP_684576.1| - 0.00061 19.5 0.0 0.00096 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|147921607|ref|YP_684576.1| - 0.0063 16.9 0.0 0.015 15.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|147921607|ref|YP_684576.1| - 0.0074 15.2 0.1 0.0099 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF43 Ubie_methyltran PF01209.13 gi|147921607|ref|YP_684576.1| - 0.0098 15.0 0.1 0.016 14.3 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CmcI PF04989.7 gi|147921607|ref|YP_684576.1| - 0.033 13.5 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 Cephalosporin hydroxylase PCMT PF01135.14 gi|147921607|ref|YP_684576.1| - 0.048 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|147921607|ref|YP_684576.1| - 0.054 12.4 0.2 0.076 11.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) MetW PF07021.7 gi|147921607|ref|YP_684576.1| - 0.058 12.7 0.2 0.29 10.4 0.1 1.9 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Inhibitor_I42 PF09394.5 gi|147921608|ref|YP_684575.1| - 7.6e-30 103.1 0.0 9.7e-30 102.7 0.0 1.1 1 0 0 1 1 1 1 Chagasin family peptidase inhibitor I42 AAA_28 PF13521.1 gi|147921609|ref|YP_684574.1| - 0.13 12.1 0.1 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain RPA_C PF08784.6 gi|147921610|ref|YP_684573.1| - 0.0018 18.6 0.1 0.0037 17.6 0.1 1.5 1 1 0 1 1 1 1 Replication protein A C terminal Pex19 PF04614.7 gi|147921610|ref|YP_684573.1| - 0.061 12.9 0.2 0.091 12.3 0.1 1.2 1 0 0 1 1 1 0 Pex19 protein family DUF313 PF03754.8 gi|147921612|ref|YP_684571.1| - 0.35 10.8 2.2 1.5 8.7 1.5 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF313) CarboxypepD_reg PF13620.1 gi|147921613|ref|YP_684570.1| - 1.8e-23 82.3 10.2 5.6e-11 42.3 0.3 3.3 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921613|ref|YP_684570.1| - 5.9e-13 48.6 1.6 1.6e-06 28.0 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147921613|ref|YP_684570.1| - 1.2e-09 37.7 4.4 0.0002 21.0 0.0 3.6 3 1 0 3 3 3 2 Cna protein B-type domain MG1 PF11974.3 gi|147921613|ref|YP_684570.1| - 5e-09 36.5 0.7 0.004 17.6 0.0 3.5 1 1 2 3 3 3 2 Alpha-2-macroglobulin MG1 domain Dioxygenase_C PF00775.16 gi|147921613|ref|YP_684570.1| - 3e-07 29.8 0.4 0.069 12.3 0.0 3.8 3 2 0 3 3 3 2 Dioxygenase DUF4198 PF10670.4 gi|147921613|ref|YP_684570.1| - 7e-06 26.1 0.2 0.0048 16.9 0.1 2.6 2 0 0 2 2 2 2 Domain of unknown function (DUF4198) DUF1416 PF07210.7 gi|147921613|ref|YP_684570.1| - 8.4e-06 25.3 0.6 0.085 12.4 0.0 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF1416) DUF824 PF05688.6 gi|147921613|ref|YP_684570.1| - 6.2e-05 22.5 2.9 0.13 11.9 0.1 4.0 4 0 0 4 4 4 2 Salmonella repeat of unknown function (DUF824) Big_1 PF02369.11 gi|147921613|ref|YP_684570.1| - 0.00022 21.0 3.1 1.3 8.9 0.1 3.2 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) DUF290 PF01060.18 gi|147921613|ref|YP_684570.1| - 0.0049 16.8 0.0 0.66 10.0 0.0 2.5 2 0 0 2 2 2 1 Transthyretin-like family Pollen_Ole_e_I PF01190.12 gi|147921613|ref|YP_684570.1| - 0.015 15.0 0.0 0.23 11.3 0.0 2.3 2 0 0 2 2 2 0 Pollen proteins Ole e I like fn3_3 PF14686.1 gi|147921613|ref|YP_684570.1| - 0.3 11.2 2.2 19 5.4 0.1 3.3 3 0 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF294 PF03445.8 gi|147921614|ref|YP_684569.1| - 7e-35 119.6 0.0 1.1e-34 118.9 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF294_C PF10335.4 gi|147921614|ref|YP_684569.1| - 6.8e-26 90.6 0.0 2.3e-25 88.9 0.0 1.8 2 0 0 2 2 2 1 Putative nucleotidyltransferase substrate binding domain AP_endonuc_2 PF01261.19 gi|147921614|ref|YP_684569.1| - 2.3e-22 79.3 0.1 4.2e-22 78.4 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel NTP_transf_2 PF01909.18 gi|147921614|ref|YP_684569.1| - 0.0059 16.9 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain GlnE PF03710.10 gi|147921614|ref|YP_684569.1| - 0.0077 15.5 0.0 0.017 14.3 0.0 1.5 1 0 0 1 1 1 1 Glutamate-ammonia ligase adenylyltransferase HTH_20 PF12840.2 gi|147921614|ref|YP_684569.1| - 0.081 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_hydro_3 PF00933.16 gi|147921615|ref|YP_684568.1| - 8.9e-91 303.9 0.0 1.3e-90 303.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|147921615|ref|YP_684568.1| - 3.1e-54 183.8 0.0 6.8e-53 179.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|147921615|ref|YP_684568.1| - 2.3e-26 91.5 0.0 8.2e-26 89.7 0.0 2.0 2 0 0 2 2 2 1 Fibronectin type III-like domain DUF2975 PF11188.3 gi|147921616|ref|YP_684567.1| - 0.00065 19.4 9.6 0.0014 18.4 6.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2975) DUF4234 PF14018.1 gi|147921616|ref|YP_684567.1| - 0.0013 18.4 0.3 0.0013 18.4 0.2 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4234) TM2 PF05154.11 gi|147921616|ref|YP_684567.1| - 0.016 15.3 7.4 0.016 15.3 5.1 2.6 2 2 0 2 2 2 0 TM2 domain zf-DHHC PF01529.15 gi|147921616|ref|YP_684567.1| - 0.56 9.5 4.4 0.74 9.1 3.1 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DUF4191 PF13829.1 gi|147921616|ref|YP_684567.1| - 1.1 8.3 5.2 0.77 8.8 2.7 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4064 PF13273.1 gi|147921616|ref|YP_684567.1| - 2 8.5 13.7 0.28 11.2 6.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) FMN_red PF03358.10 gi|147921617|ref|YP_684566.1| - 4.4e-22 78.2 0.0 5.8e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|147921617|ref|YP_684566.1| - 9.3e-10 38.3 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold HypA PF01155.14 gi|147921617|ref|YP_684566.1| - 0.0011 18.6 0.3 0.0011 18.6 0.2 1.8 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family SIS PF01380.17 gi|147921618|ref|YP_684565.1| - 3.4e-09 36.3 0.0 4.7e-05 22.9 0.0 2.7 2 1 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|147921618|ref|YP_684565.1| - 2.1e-05 24.2 0.1 0.27 10.9 0.0 3.3 2 1 1 3 3 3 2 SIS domain PepSY PF03413.14 gi|147921619|ref|YP_684564.1| - 0.00084 19.9 0.1 0.019 15.5 0.0 2.4 2 1 0 2 2 2 1 Peptidase propeptide and YPEB domain TrkA_N PF02254.13 gi|147921619|ref|YP_684564.1| - 0.061 13.3 0.0 0.16 11.9 0.0 1.8 1 1 0 1 1 1 0 TrkA-N domain ThiF PF00899.16 gi|147921619|ref|YP_684564.1| - 0.072 12.9 0.2 0.18 11.5 0.0 1.7 2 0 0 2 2 2 0 ThiF family Mrr_cat PF04471.7 gi|147921620|ref|YP_684563.1| - 0.0013 18.5 0.1 0.0016 18.2 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.6 gi|147921620|ref|YP_684563.1| - 0.0035 17.5 0.2 0.0041 17.3 0.1 1.2 1 0 0 1 1 1 1 Nuclease-related domain CBS PF00571.23 gi|147921621|ref|YP_684562.1| - 5.9e-41 138.0 8.0 2.1e-11 43.4 0.2 4.3 4 0 0 4 4 4 4 CBS domain SID-1_RNA_chan PF13965.1 gi|147921622|ref|YP_684561.1| - 0.00097 17.4 2.9 0.001 17.3 2.0 1.0 1 0 0 1 1 1 1 dsRNA-gated channel SID-1 DUF4446 PF14584.1 gi|147921622|ref|YP_684561.1| - 0.0047 16.7 1.2 0.0047 16.7 0.8 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF4446) DUF1948 PF09185.5 gi|147921622|ref|YP_684561.1| - 0.015 14.9 2.6 0.016 14.8 0.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1948) DUF2207 PF09972.4 gi|147921622|ref|YP_684561.1| - 0.024 13.2 0.1 0.051 12.1 0.0 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) T2SF PF00482.18 gi|147921622|ref|YP_684561.1| - 0.045 13.6 0.0 0.081 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F DUF1616 PF07760.6 gi|147921622|ref|YP_684561.1| - 0.059 12.4 0.6 0.062 12.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) IncA PF04156.9 gi|147921622|ref|YP_684561.1| - 0.059 12.9 0.4 0.059 12.9 0.3 1.5 2 0 0 2 2 2 0 IncA protein OPT PF03169.10 gi|147921622|ref|YP_684561.1| - 0.065 11.6 0.0 0.087 11.2 0.0 1.1 1 0 0 1 1 1 0 OPT oligopeptide transporter protein Herpes_gE PF02480.11 gi|147921622|ref|YP_684561.1| - 0.066 11.4 0.0 0.068 11.4 0.0 1.1 1 0 0 1 1 1 0 Alphaherpesvirus glycoprotein E DUF1628 PF07790.6 gi|147921622|ref|YP_684561.1| - 0.13 13.0 1.4 0.75 10.5 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) DUF912 PF06024.7 gi|147921622|ref|YP_684561.1| - 0.23 11.5 2.0 0.24 11.4 0.6 1.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF843 PF05814.6 gi|147921622|ref|YP_684561.1| - 0.33 10.7 4.7 8.3 6.2 0.8 2.3 1 1 1 2 2 2 0 Baculovirus protein of unknown function (DUF843) DUF1510 PF07423.6 gi|147921622|ref|YP_684561.1| - 0.59 9.4 3.3 0.69 9.2 2.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1510) Lumazine_bd PF12870.2 gi|147921623|ref|YP_684560.1| - 0.00022 21.2 0.2 0.0021 18.0 0.2 2.1 1 1 0 1 1 1 1 Lumazine-binding domain Cpn60_TCP1 PF00118.19 gi|147921624|ref|YP_684559.1| - 5e-155 516.8 16.7 5.7e-155 516.6 11.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF59 PF01883.14 gi|147921624|ref|YP_684559.1| - 0.036 14.0 1.8 1.5 8.8 0.0 3.7 3 0 0 3 3 3 0 Domain of unknown function DUF59 Flavodoxin_5 PF12724.2 gi|147921625|ref|YP_684558.1| - 0.00059 19.8 0.0 0.00085 19.3 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain DUF521 PF04412.8 gi|147921626|ref|YP_684557.1| - 3.4e-156 519.8 0.0 3.8e-156 519.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_binding_2 PF13380.1 gi|147921626|ref|YP_684557.1| - 0.0016 18.6 0.1 0.0042 17.2 0.0 1.7 2 0 0 2 2 2 1 CoA binding domain DUF126 PF01989.11 gi|147921627|ref|YP_684556.1| - 3.7e-36 122.6 1.1 5.5e-36 122.0 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 PEP-utilizers PF00391.18 gi|147921627|ref|YP_684556.1| - 0.00095 18.6 0.5 0.0018 17.8 0.4 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Peptidase_M50 PF02163.17 gi|147921628|ref|YP_684555.1| - 3.1e-16 58.9 5.3 3.1e-16 58.9 3.7 2.6 2 1 0 2 2 2 1 Peptidase family M50 DBI_PRT PF02277.12 gi|147921629|ref|YP_684554.1| - 1.8e-22 79.8 2.3 3e-22 79.1 1.6 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase zf-ZPR1 PF03367.8 gi|147921630|ref|YP_684553.1| - 3.7e-41 139.9 0.1 4.5e-41 139.7 0.1 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Rad50_zn_hook PF04423.9 gi|147921630|ref|YP_684553.1| - 0.034 13.6 0.1 0.068 12.6 0.1 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif DUF552 PF04472.7 gi|147921631|ref|YP_684552.1| - 1.4e-17 63.3 0.6 1.8e-17 62.9 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF552) PUA PF01472.15 gi|147921632|ref|YP_684551.1| - 1e-17 63.6 2.3 1.6e-17 62.9 1.6 1.3 1 0 0 1 1 1 1 PUA domain LSM PF01423.17 gi|147921633|ref|YP_684550.1| - 4.1e-24 83.9 0.1 4.4e-24 83.7 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|147921633|ref|YP_684550.1| - 0.0033 17.3 0.0 0.0042 16.9 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain GATase_2 PF00310.16 gi|147921634|ref|YP_684549.1| - 6.3e-27 94.2 0.0 2.2e-20 72.6 0.0 2.9 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|147921634|ref|YP_684549.1| - 2e-25 88.9 0.0 4.7e-25 87.7 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|147921634|ref|YP_684549.1| - 1.1e-24 86.9 0.0 2.3e-24 85.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|147921634|ref|YP_684549.1| - 2.6e-12 46.5 0.4 5.6e-12 45.4 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|147921634|ref|YP_684549.1| - 4e-10 38.8 0.0 6.8e-10 38.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DsbD PF02683.10 gi|147921636|ref|YP_684547.1| - 4.3e-41 140.8 20.9 5.2e-41 140.5 14.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|147921636|ref|YP_684547.1| - 5.9e-16 58.7 21.3 7.2e-16 58.5 14.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region UPF0016 PF01169.14 gi|147921636|ref|YP_684547.1| - 0.31 11.2 15.1 0.096 12.8 2.3 3.2 2 1 1 3 3 3 0 Uncharacterized protein family UPF0016 Mito_morph_reg PF14972.1 gi|147921636|ref|YP_684547.1| - 0.78 9.1 2.5 1.8 7.9 0.1 2.1 1 1 1 2 2 2 0 Mitochondrial morphogenesis regulator Thioredoxin PF00085.15 gi|147921637|ref|YP_684546.1| - 3.9e-12 45.7 0.0 5.5e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|147921637|ref|YP_684546.1| - 0.00015 21.7 0.0 0.00024 21.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_6 PF13848.1 gi|147921637|ref|YP_684546.1| - 0.0022 17.8 0.0 0.0029 17.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_2 PF13098.1 gi|147921637|ref|YP_684546.1| - 0.0036 17.5 0.3 0.02 15.1 0.2 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|147921637|ref|YP_684546.1| - 0.0095 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.1 gi|147921637|ref|YP_684546.1| - 0.054 13.5 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like Flavodoxin_5 PF12724.2 gi|147921638|ref|YP_684545.1| - 8.3e-14 51.7 0.0 1.4e-13 51.0 0.0 1.4 1 1 0 1 1 1 1 Flavodoxin domain Flavodoxin_4 PF12682.2 gi|147921638|ref|YP_684545.1| - 0.029 13.7 0.0 0.059 12.7 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin FMN_red PF03358.10 gi|147921638|ref|YP_684545.1| - 0.083 12.4 0.0 0.76 9.2 0.0 2.0 1 1 1 2 2 2 0 NADPH-dependent FMN reductase tRNA-synt_2b PF00587.20 gi|147921639|ref|YP_684544.1| - 2.9e-39 134.4 0.0 4.3e-39 133.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|147921639|ref|YP_684544.1| - 2.7e-27 94.9 5.5 4.5e-27 94.1 3.8 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain ApbE PF02424.10 gi|147921639|ref|YP_684544.1| - 0.1 11.8 0.0 0.33 10.1 0.0 1.9 1 1 0 1 1 1 0 ApbE family Mnd1 PF03962.10 gi|147921639|ref|YP_684544.1| - 0.21 11.2 2.5 0.37 10.4 1.7 1.3 1 0 0 1 1 1 0 Mnd1 family DUF362 PF04015.7 gi|147921640|ref|YP_684543.1| - 4.6e-14 52.3 0.0 7.1e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Fer4_8 PF13183.1 gi|147921640|ref|YP_684543.1| - 1.5e-07 31.2 3.9 0.0037 17.2 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147921640|ref|YP_684543.1| - 4.3e-07 29.4 17.4 0.00016 21.3 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|147921640|ref|YP_684543.1| - 5.9e-07 29.7 13.5 9.7e-07 29.0 9.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147921640|ref|YP_684543.1| - 1.2e-06 27.8 16.8 0.00076 18.9 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147921640|ref|YP_684543.1| - 4.7e-06 26.2 42.1 3.2e-05 23.6 11.6 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921640|ref|YP_684543.1| - 2.3e-05 24.5 14.9 3.5e-05 23.9 10.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921640|ref|YP_684543.1| - 0.00082 19.1 17.1 0.093 12.6 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147921640|ref|YP_684543.1| - 0.0014 18.8 9.5 0.13 12.6 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147921640|ref|YP_684543.1| - 0.0082 15.9 13.6 0.025 14.4 9.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921640|ref|YP_684543.1| - 0.02 15.6 15.0 0.13 13.0 2.9 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|147921640|ref|YP_684543.1| - 0.73 10.3 21.4 0.13 12.6 2.3 2.5 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147921640|ref|YP_684543.1| - 1.1 9.8 14.4 2.4 8.7 3.0 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147921640|ref|YP_684543.1| - 1.9 8.9 14.0 0.65 10.4 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|147921640|ref|YP_684543.1| - 5.1 7.5 13.4 5.9 7.4 2.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF362 PF04015.7 gi|147921641|ref|YP_684542.1| - 2.1e-12 46.9 0.0 2.6e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Aminotran_1_2 PF00155.16 gi|147921642|ref|YP_684541.1| - 5.2e-67 226.3 0.0 6.4e-67 226.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|147921642|ref|YP_684541.1| - 7.2e-14 51.5 0.1 1.9e-13 50.2 0.0 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|147921642|ref|YP_684541.1| - 5.1e-10 38.9 0.0 9.2e-10 38.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|147921642|ref|YP_684541.1| - 1.5e-08 33.8 0.0 2.3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|147921642|ref|YP_684541.1| - 9.7e-08 30.6 0.0 1.4e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|147921642|ref|YP_684541.1| - 0.0092 14.5 0.0 0.014 13.9 0.0 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain UvdE PF03851.9 gi|147921644|ref|YP_684539.1| - 2e-28 99.2 0.0 2.8e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 UV-endonuclease UvdE AP_endonuc_2 PF01261.19 gi|147921644|ref|YP_684539.1| - 0.00025 20.3 0.3 0.048 12.9 0.0 2.4 2 1 1 3 3 3 2 Xylose isomerase-like TIM barrel MlrC_C PF07171.7 gi|147921644|ref|YP_684539.1| - 0.016 14.7 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 MlrC C-terminus FAD_binding_2 PF00890.19 gi|147921645|ref|YP_684538.1| - 4e-12 45.7 0.3 6.1e-12 45.1 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|147921645|ref|YP_684538.1| - 0.00039 20.3 1.5 0.29 10.9 0.6 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|147921645|ref|YP_684538.1| - 0.044 13.8 3.0 0.13 12.2 1.6 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|147921645|ref|YP_684538.1| - 0.25 10.1 1.1 0.85 8.4 0.3 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Adeno_shaft PF00608.12 gi|147921645|ref|YP_684538.1| - 0.27 10.9 1.3 0.5 10.0 0.1 2.2 3 0 0 3 3 3 0 Adenoviral fibre protein (repeat/shaft region) HI0933_like PF03486.9 gi|147921645|ref|YP_684538.1| - 0.56 8.6 6.1 3.3 6.0 0.3 2.4 3 0 0 3 3 3 0 HI0933-like protein DAO PF01266.19 gi|147921645|ref|YP_684538.1| - 2.4 6.9 6.0 12 4.6 4.2 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase CCG PF02754.11 gi|147921646|ref|YP_684537.1| - 8.8e-29 99.3 7.1 5.4e-15 55.1 0.0 2.6 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|147921646|ref|YP_684537.1| - 1.8e-07 31.0 8.4 1.8e-07 31.0 5.8 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|147921646|ref|YP_684537.1| - 1.4e-05 24.7 11.4 1.4e-05 24.7 7.9 2.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921646|ref|YP_684537.1| - 2.9e-05 24.2 17.0 0.0064 16.7 1.2 3.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|147921646|ref|YP_684537.1| - 9.6e-05 22.6 27.0 0.00034 20.9 10.6 3.1 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|147921646|ref|YP_684537.1| - 0.00013 21.7 10.8 0.00013 21.7 7.5 2.8 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|147921646|ref|YP_684537.1| - 0.00024 20.5 20.3 0.0011 18.4 3.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|147921646|ref|YP_684537.1| - 0.00034 21.2 12.3 0.077 13.7 2.5 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|147921646|ref|YP_684537.1| - 0.0026 18.1 22.2 0.011 16.1 0.9 4.0 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921646|ref|YP_684537.1| - 0.0053 16.5 23.1 0.0071 16.1 2.1 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|147921646|ref|YP_684537.1| - 0.0095 16.2 22.2 0.012 15.9 8.6 4.2 3 2 2 5 5 5 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|147921646|ref|YP_684537.1| - 0.0096 16.1 24.8 0.028 14.7 1.4 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|147921646|ref|YP_684537.1| - 0.011 15.6 4.1 0.011 15.6 2.9 3.8 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|147921646|ref|YP_684537.1| - 0.24 12.0 8.1 1.2 9.7 0.2 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147921646|ref|YP_684537.1| - 1.4 9.3 11.1 1.9 8.9 1.0 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|147921646|ref|YP_684537.1| - 5.4 7.8 30.8 0.62 10.7 3.2 4.5 4 0 0 4 4 4 0 4Fe-4S binding domain ABC2_membrane_2 PF12679.2 gi|147921647|ref|YP_684536.1| - 1.1e-11 44.1 23.4 2.5e-11 42.9 16.1 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147921647|ref|YP_684536.1| - 7.3e-06 25.2 27.2 1.4e-05 24.2 18.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921647|ref|YP_684536.1| - 7e-05 22.1 29.9 0.00049 19.3 20.8 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|147921648|ref|YP_684535.1| - 7.7e-30 103.9 0.0 1.1e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921648|ref|YP_684535.1| - 2.5e-13 50.6 0.0 1.3e-10 41.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|147921648|ref|YP_684535.1| - 6.4e-05 23.3 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|147921648|ref|YP_684535.1| - 0.00022 21.5 0.0 0.00029 21.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|147921648|ref|YP_684535.1| - 0.0021 16.6 0.0 0.018 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|147921648|ref|YP_684535.1| - 0.0092 15.9 0.1 0.061 13.3 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|147921648|ref|YP_684535.1| - 0.013 15.0 0.2 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|147921648|ref|YP_684535.1| - 0.043 13.7 0.0 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|147921648|ref|YP_684535.1| - 0.046 13.9 0.2 0.34 11.1 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgK PF03308.11 gi|147921648|ref|YP_684535.1| - 0.066 11.9 0.1 0.14 10.8 0.1 1.5 2 0 0 2 2 2 0 ArgK protein SRP54 PF00448.17 gi|147921648|ref|YP_684535.1| - 0.081 12.3 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|147921648|ref|YP_684535.1| - 0.097 11.8 0.0 0.44 9.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|147921648|ref|YP_684535.1| - 0.13 11.6 0.1 1.2 8.4 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|147921649|ref|YP_684533.1| - 2.6e-18 65.8 18.9 2.6e-18 65.8 13.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147921649|ref|YP_684533.1| - 3.5e-13 49.2 15.3 3.5e-13 49.2 10.6 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921649|ref|YP_684533.1| - 2.2e-09 36.8 19.6 2.2e-09 36.8 13.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147921649|ref|YP_684533.1| - 0.0035 16.6 27.5 0.0042 16.4 10.5 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein RseC_MucC PF04246.7 gi|147921649|ref|YP_684533.1| - 2.2 7.8 9.1 0.099 12.2 0.8 2.3 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC ABC_tran PF00005.22 gi|147921650|ref|YP_684532.1| - 3.8e-30 104.9 0.0 5.6e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|147921650|ref|YP_684532.1| - 5.7e-15 56.0 0.0 1.1e-12 48.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|147921650|ref|YP_684532.1| - 0.00024 19.7 0.0 0.23 9.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|147921650|ref|YP_684532.1| - 0.0014 18.8 0.0 0.013 15.7 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|147921650|ref|YP_684532.1| - 0.0019 17.7 0.0 1.1 8.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|147921650|ref|YP_684532.1| - 0.0026 17.7 0.1 0.031 14.2 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.17 gi|147921650|ref|YP_684532.1| - 0.01 15.2 0.2 0.016 14.6 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|147921650|ref|YP_684532.1| - 0.018 15.3 0.1 0.029 14.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|147921650|ref|YP_684532.1| - 0.039 13.4 0.1 0.076 12.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|147921650|ref|YP_684532.1| - 0.047 14.2 0.0 0.44 11.0 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) AAA_19 PF13245.1 gi|147921650|ref|YP_684532.1| - 0.079 12.7 0.6 1.2 8.9 0.1 2.6 3 0 0 3 3 3 0 Part of AAA domain MobB PF03205.9 gi|147921650|ref|YP_684532.1| - 0.079 12.6 0.1 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|147921650|ref|YP_684532.1| - 0.1 11.9 0.1 0.28 10.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|147921650|ref|YP_684532.1| - 0.11 12.6 0.1 1.2 9.2 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|147921650|ref|YP_684532.1| - 0.11 12.3 0.0 0.32 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Ibs_toxin PF13956.1 gi|147921651|ref|YP_684531.1| - 1.6 8.6 4.0 3.2 7.6 2.8 1.5 1 0 0 1 1 1 0 Toxin Ibs, type I toxin-antitoxin system FTR_C PF02741.10 gi|147921653|ref|YP_684528.1| - 8.5e-69 230.0 2.7 1.4e-68 229.3 1.9 1.4 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.13 gi|147921653|ref|YP_684528.1| - 3.3e-60 201.9 0.1 3.3e-60 201.9 0.0 1.8 3 0 0 3 3 3 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Fer4_15 PF13459.1 gi|147921654|ref|YP_684527.1| - 4.7e-14 52.6 11.0 6.7e-14 52.2 7.6 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|147921654|ref|YP_684527.1| - 1.3e-13 51.0 11.5 1.8e-13 50.6 8.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|147921654|ref|YP_684527.1| - 5.7e-09 36.2 31.7 7.9e-05 22.9 9.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|147921654|ref|YP_684527.1| - 2.1e-08 33.6 16.2 4e-07 29.6 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|147921654|ref|YP_684527.1| - 1.2e-07 31.0 10.3 6.1e-07 28.7 4.5 3.4 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|147921654|ref|YP_684527.1| - 2.9e-07 30.1 13.4 7.6e-06 25.6 9.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|147921654|ref|YP_684527.1| - 4.3e-07 30.0 12.2 7.4e-07 29.3 8.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|147921654|ref|YP_684527.1| - 1.6e-05 24.5 4.8 1.6e-05 24.5 3.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.6 gi|147921654|ref|YP_684527.1| - 2.8e-05 23.8 5.7 3.7e-05 23.4 3.9 1.2 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_4 PF12800.2 gi|147921654|ref|YP_684527.1| - 5.1e-05 23.2 1.5 5.1e-05 23.2 1.1 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|147921654|ref|YP_684527.1| - 7e-05 22.6 10.8 0.0001 22.0 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|147921654|ref|YP_684527.1| - 0.00012 22.7 12.0 0.041 14.6 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|147921654|ref|YP_684527.1| - 0.0092 16.4 16.3 0.026 15.0 2.3 3.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|147921654|ref|YP_684527.1| - 0.021 14.8 11.6 0.57 10.2 8.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|147921654|ref|YP_684527.1| - 0.08 13.3 2.3 0.08 13.3 1.6 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|147921654|ref|YP_684527.1| - 0.92 9.9 15.2 0.3 11.5 3.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF2099 PF09872.4 gi|147921655|ref|YP_684526.1| - 1.6e-113 378.0 2.0 1.8e-113 377.8 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2099) Radical_SAM PF04055.16 gi|147921657|ref|YP_684524.1| - 8.8e-13 48.7 1.1 2.3e-12 47.3 0.8 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147921657|ref|YP_684524.1| - 5e-11 42.8 0.0 9.3e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147921657|ref|YP_684524.1| - 1.3e-07 31.6 0.0 2.4e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|147921657|ref|YP_684524.1| - 0.0032 17.7 0.8 0.012 15.9 0.5 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Apc3 PF12895.2 gi|147921657|ref|YP_684524.1| - 0.085 12.9 0.2 0.2 11.8 0.2 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 Alpha_GJ PF03229.8 gi|147921658|ref|YP_684523.1| - 0.0024 18.2 3.8 0.0024 18.2 2.6 1.7 2 0 0 2 2 2 1 Alphavirus glycoprotein J GCHY-1 PF02649.9 gi|147921659|ref|YP_684522.1| - 4.3e-90 301.6 3.3 4.9e-90 301.5 2.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FolB PF02152.13 gi|147921659|ref|YP_684522.1| - 0.024 14.8 0.7 0.31 11.2 0.0 2.6 3 0 0 3 3 3 0 Dihydroneopterin aldolase SicP-binding PF09119.5 gi|147921659|ref|YP_684522.1| - 0.092 12.4 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 SicP binding MCH PF02289.11 gi|147921661|ref|YP_684520.1| - 9.1e-133 442.1 2.0 1e-132 441.9 1.4 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HTH_24 PF13412.1 gi|147921662|ref|YP_684519.1| - 2.4e-16 58.8 0.3 9.8e-08 31.2 0.0 2.8 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding PQQ_2 PF13360.1 gi|147921662|ref|YP_684519.1| - 1.4e-12 47.6 4.8 1e-06 28.3 0.7 4.3 2 1 1 4 4 4 3 PQQ-like domain HTH_5 PF01022.15 gi|147921662|ref|YP_684519.1| - 2.1e-09 36.9 0.2 0.0018 17.8 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147921662|ref|YP_684519.1| - 2.2e-08 33.7 0.3 0.00012 21.7 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_IclR PF09339.5 gi|147921662|ref|YP_684519.1| - 2.4e-08 33.4 0.1 0.0013 18.2 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain MarR PF01047.17 gi|147921662|ref|YP_684519.1| - 4.9e-08 32.5 0.1 0.0056 16.3 0.0 2.6 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.2 gi|147921662|ref|YP_684519.1| - 1.1e-06 28.1 1.9 0.0045 16.6 0.1 2.9 3 0 0 3 3 2 2 MarR family HTH_38 PF13936.1 gi|147921662|ref|YP_684519.1| - 1.8e-05 24.1 0.0 0.17 11.4 0.1 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_23 PF13384.1 gi|147921662|ref|YP_684519.1| - 3.5e-05 23.2 0.0 0.21 11.2 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|147921662|ref|YP_684519.1| - 0.00011 21.5 0.0 0.16 11.4 0.0 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 PQQ PF01011.16 gi|147921662|ref|YP_684519.1| - 0.00022 20.6 6.9 0.015 14.8 0.0 6.0 7 0 0 7 7 7 1 PQQ enzyme repeat TrmB PF01978.14 gi|147921662|ref|YP_684519.1| - 0.00049 19.7 0.1 0.011 15.4 0.0 3.0 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_3 PF01381.17 gi|147921662|ref|YP_684519.1| - 0.00081 19.1 0.1 1.9 8.4 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix Sigma70_r4 PF04545.11 gi|147921662|ref|YP_684519.1| - 0.0017 17.5 0.0 0.18 11.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|147921662|ref|YP_684519.1| - 0.0037 16.8 0.1 1 9.0 0.0 2.5 2 0 0 2 2 2 1 HTH domain KorB PF08535.5 gi|147921662|ref|YP_684519.1| - 0.0088 16.1 0.0 0.87 9.7 0.0 2.4 2 0 0 2 2 2 1 KorB domain FaeA PF04703.7 gi|147921662|ref|YP_684519.1| - 0.013 15.6 0.2 9.2 6.5 0.0 3.4 3 0 0 3 3 3 0 FaeA-like protein DUF742 PF05331.6 gi|147921662|ref|YP_684519.1| - 0.018 14.5 0.0 0.13 11.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF742) GerE PF00196.14 gi|147921662|ref|YP_684519.1| - 0.022 14.0 0.0 1.5 8.1 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family PQQ_3 PF13570.1 gi|147921662|ref|YP_684519.1| - 0.037 14.3 8.8 12 6.3 0.0 6.5 6 1 1 7 7 6 0 PQQ-like domain Herpes_UL36 PF03586.8 gi|147921662|ref|YP_684519.1| - 0.04 12.9 0.0 0.063 12.3 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL36 tegument protein HTH_15 PF12324.3 gi|147921662|ref|YP_684519.1| - 0.053 13.1 0.0 0.19 11.4 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of alkylmercury lyase TFIIE_alpha PF02002.12 gi|147921662|ref|YP_684519.1| - 0.059 12.8 0.0 16 5.0 0.0 2.6 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_1 PF00126.22 gi|147921662|ref|YP_684519.1| - 0.093 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r3 PF04539.11 gi|147921662|ref|YP_684519.1| - 0.097 12.5 0.0 0.41 10.5 0.0 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_27 PF13463.1 gi|147921662|ref|YP_684519.1| - 0.11 12.8 0.0 0.62 10.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_IS630 PF01710.11 gi|147921662|ref|YP_684519.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Transposase HTH_37 PF13744.1 gi|147921662|ref|YP_684519.1| - 0.14 11.9 0.1 2.7 7.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|147921663|ref|YP_684518.1| - 0.15 11.9 1.0 0.55 10.1 0.1 2.2 2 1 0 2 2 2 0 NUMOD1 domain RHH_2 PF03693.9 gi|147921664|ref|YP_684517.1| - 5.5e-05 23.2 0.1 6.5e-05 23.0 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) GPW_gp25 PF04965.9 gi|147921664|ref|YP_684517.1| - 0.08 12.4 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Gene 25-like lysozyme DUF2956 PF11169.3 gi|147921664|ref|YP_684517.1| - 0.14 12.1 0.6 0.2 11.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) HTH_24 PF13412.1 gi|147921665|ref|YP_684516.1| - 1.7e-10 40.1 0.1 0.00019 20.7 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|147921665|ref|YP_684516.1| - 3.7e-08 32.9 0.1 0.00017 21.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|147921665|ref|YP_684516.1| - 7.5e-06 25.5 0.1 0.037 13.7 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|147921665|ref|YP_684516.1| - 9.4e-06 25.1 0.0 0.084 12.4 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|147921665|ref|YP_684516.1| - 7.2e-05 22.8 0.3 0.00024 21.1 0.1 1.9 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.2 gi|147921665|ref|YP_684516.1| - 0.00046 19.7 0.1 0.37 10.5 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|147921665|ref|YP_684516.1| - 0.00076 19.2 0.0 0.055 13.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.10 gi|147921665|ref|YP_684516.1| - 0.0015 17.9 0.4 0.077 12.4 0.1 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_34 PF13601.1 gi|147921665|ref|YP_684516.1| - 0.0024 17.8 0.1 1 9.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|147921665|ref|YP_684516.1| - 0.0026 17.3 0.0 2 8.1 0.0 2.4 2 0 0 2 2 2 2 Homeodomain-like domain EAP30 PF04157.11 gi|147921665|ref|YP_684516.1| - 0.0052 15.9 0.0 1.2 8.3 0.0 2.1 2 0 0 2 2 2 2 EAP30/Vps36 family RPA_C PF08784.6 gi|147921665|ref|YP_684516.1| - 0.0053 17.1 0.1 0.63 10.4 0.0 2.2 2 0 0 2 2 2 1 Replication protein A C terminal HTH_11 PF08279.7 gi|147921665|ref|YP_684516.1| - 0.0057 16.2 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_Tnp_Tc3_2 PF01498.13 gi|147921665|ref|YP_684516.1| - 0.0066 16.4 0.0 1 9.4 0.0 2.3 2 0 0 2 2 2 1 Transposase Sigma70_r4 PF04545.11 gi|147921665|ref|YP_684516.1| - 0.01 15.1 0.1 3.3 7.0 0.0 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|147921665|ref|YP_684516.1| - 0.016 14.7 0.0 4.8 6.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain PaaX PF07848.7 gi|147921665|ref|YP_684516.1| - 0.062 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.1 gi|147921665|ref|YP_684516.1| - 0.13 12.1 0.4 0.56 10.0 0.2 2.1 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|147921665|ref|YP_684516.1| - 0.13 11.7 0.1 0.35 10.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PMT_2 PF13231.1 gi|147921666|ref|YP_684515.1| - 2.3e-10 40.5 17.3 2.3e-10 40.5 12.0 4.6 4 1 1 5 5 5 2 Dolichyl-phosphate-mannose-protein mannosyltransferase GHMP_kinases_C PF08544.8 gi|147921667|ref|YP_684514.1| - 2.8e-09 37.0 0.0 7.3e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|147921667|ref|YP_684514.1| - 0.00014 21.8 0.0 0.00029 20.8 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF1628 PF07790.6 gi|147921668|ref|YP_684513.1| - 8e-19 68.1 6.4 1.4e-18 67.3 4.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|147921669|ref|YP_684512.1| - 2.7e-19 69.6 7.2 4.9e-19 68.8 5.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) GldM_C PF12080.3 gi|147921669|ref|YP_684512.1| - 0.24 11.3 2.0 0.35 10.7 0.2 1.9 1 1 1 2 2 2 0 GldM C-terminal domain DUF512 PF04459.7 gi|147921671|ref|YP_684510.1| - 4.3e-28 97.7 0.0 6.1e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF512) Radical_SAM PF04055.16 gi|147921671|ref|YP_684510.1| - 1.6e-15 57.7 8.7 1e-13 51.8 5.5 3.0 1 1 0 1 1 1 1 Radical SAM superfamily Rpr2 PF04032.11 gi|147921671|ref|YP_684510.1| - 0.32 10.8 0.0 0.32 10.8 0.0 2.4 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Abhydrolase_5 PF12695.2 gi|147921672|ref|YP_684509.1| - 1.5e-23 83.1 0.0 1.8e-23 82.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|147921672|ref|YP_684509.1| - 4.6e-14 52.8 0.2 4.9e-09 36.4 0.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|147921672|ref|YP_684509.1| - 7e-10 38.4 0.0 0.00045 19.5 0.0 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family DLH PF01738.13 gi|147921672|ref|YP_684509.1| - 3.8e-07 29.6 0.0 4.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|147921672|ref|YP_684509.1| - 8.8e-07 28.7 0.1 0.001 18.6 0.1 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|147921672|ref|YP_684509.1| - 0.00015 21.5 0.1 0.00052 19.7 0.0 1.7 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.11 gi|147921672|ref|YP_684509.1| - 0.00015 21.2 0.3 0.015 14.7 0.0 2.4 2 1 0 2 2 2 1 Phospholipase/Carboxylesterase AXE1 PF05448.7 gi|147921672|ref|YP_684509.1| - 0.00049 18.6 0.1 0.00081 17.9 0.1 1.3 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) PAF-AH_p_II PF03403.8 gi|147921672|ref|YP_684509.1| - 0.00055 18.3 0.0 0.00062 18.1 0.0 1.3 1 0 0 1 1 1 1 Platelet-activating factor acetylhydrolase, isoform II PGAP1 PF07819.8 gi|147921672|ref|YP_684509.1| - 0.00095 18.8 0.0 0.012 15.2 0.0 2.1 2 0 0 2 2 2 1 PGAP1-like protein Abhydrolase_4 PF08386.5 gi|147921672|ref|YP_684509.1| - 0.0028 17.5 0.0 0.0063 16.3 0.0 1.6 2 0 0 2 2 2 1 TAP-like protein VirJ PF06057.6 gi|147921672|ref|YP_684509.1| - 0.0087 15.8 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial virulence protein (VirJ) DUF1100 PF06500.6 gi|147921672|ref|YP_684509.1| - 0.018 13.6 0.0 0.025 13.1 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1100) Thioesterase PF00975.15 gi|147921672|ref|YP_684509.1| - 0.041 14.1 0.0 0.082 13.1 0.0 1.5 2 0 0 2 2 2 0 Thioesterase domain Abhydrolase_3 PF07859.8 gi|147921672|ref|YP_684509.1| - 0.046 13.2 0.2 0.091 12.3 0.1 1.6 1 1 0 1 1 1 0 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|147921672|ref|YP_684509.1| - 0.048 13.3 0.0 6.3 6.4 0.0 2.2 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0227) Peptidase_S15 PF02129.13 gi|147921672|ref|YP_684509.1| - 0.063 12.6 0.1 0.18 11.1 0.1 1.6 1 1 1 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) DUF915 PF06028.6 gi|147921672|ref|YP_684509.1| - 0.076 12.0 0.0 0.35 9.9 0.0 2.0 2 1 1 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_7 PF12715.2 gi|147921672|ref|YP_684509.1| - 0.11 11.4 0.0 0.63 8.8 0.0 1.8 1 1 1 2 2 2 0 Abhydrolase family CMD PF02627.15 gi|147921673|ref|YP_684508.1| - 6.5e-17 61.1 0.3 1.1e-16 60.4 0.2 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family NifU_N PF01592.11 gi|147921673|ref|YP_684508.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 NifU-like N terminal domain Tetraspannin PF00335.15 gi|147921674|ref|YP_684507.1| - 0.74 9.0 9.9 9.9 5.3 6.8 2.0 1 1 0 1 1 1 0 Tetraspanin family MCR_C PF04609.7 gi|147921676|ref|YP_684504.1| - 9.6e-116 385.2 0.6 1.1e-115 385.0 0.4 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2113 PF09886.4 gi|147921677|ref|YP_684503.1| - 1.1e-68 230.0 0.4 1.3e-68 229.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) BcrAD_BadFG PF01869.15 gi|147921678|ref|YP_684502.1| - 7.3e-59 199.2 6.6 1e-58 198.8 4.6 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_C PF02782.11 gi|147921678|ref|YP_684502.1| - 1.4e-05 24.8 0.1 3.4e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain CmcH_NodU PF02543.10 gi|147921678|ref|YP_684502.1| - 0.022 13.9 0.1 0.041 13.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyltransferase Jag_N PF14804.1 gi|147921678|ref|YP_684502.1| - 0.052 13.5 0.2 0.052 13.5 0.2 2.0 2 0 0 2 2 2 0 Jag N-terminus Hydant_A_N PF05378.8 gi|147921678|ref|YP_684502.1| - 0.38 10.2 2.3 0.4 10.1 0.3 2.0 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.1 gi|147921678|ref|YP_684502.1| - 0.4 10.5 6.9 1.1 9.1 3.1 3.0 2 1 0 2 2 2 0 Cell division protein FtsA DUF2112 PF09885.4 gi|147921679|ref|YP_684501.1| - 3.3e-69 231.0 0.1 3.7e-69 230.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) DUF2102 PF09875.4 gi|147921680|ref|YP_684500.1| - 2e-42 142.9 0.0 3.2e-42 142.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) Fer2_4 PF13510.1 gi|147921681|ref|YP_684499.1| - 2.3e-06 27.2 0.5 0.00021 21.0 0.1 2.5 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Pro_isomerase PF00160.16 gi|147921681|ref|YP_684499.1| - 5.2e-06 26.7 0.2 0.22 11.7 0.0 3.9 2 1 0 3 3 3 3 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PASTA PF03793.14 gi|147921681|ref|YP_684499.1| - 0.014 15.0 0.2 0.059 13.0 0.0 2.2 2 0 0 2 2 2 0 PASTA domain DUF871 PF05913.6 gi|147921681|ref|YP_684499.1| - 0.11 11.3 0.0 0.21 10.3 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF871) ABC_tran PF00005.22 gi|147921682|ref|YP_684498.1| - 2.5e-52 176.8 0.0 6.3e-25 88.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|147921682|ref|YP_684498.1| - 9.7e-10 38.8 0.9 0.0022 18.0 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|147921682|ref|YP_684498.1| - 7.2e-09 35.8 0.0 0.00041 20.4 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|147921682|ref|YP_684498.1| - 3.3e-07 29.6 0.3 0.0024 17.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|147921682|ref|YP_684498.1| - 2.6e-05 23.5 9.5 0.016 14.4 0.2 4.0 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|147921682|ref|YP_684498.1| - 0.0001 23.0 0.4 0.034 14.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|147921682|ref|YP_684498.1| - 0.00012 21.9 0.1 0.55 10.1 0.0 3.8 3 1 0 3 3 3 1 Putative exonuclease SbcCD, C subunit PIF1 PF05970.9 gi|147921682|ref|YP_684498.1| - 0.00016 20.7 0.2 0.5 9.2 0.0 2.5 2 0 0 2 2 2 2 PIF1-like helicase UPF0079 PF02367.12 gi|147921682|ref|YP_684498.1| - 0.00023 20.7 0.5 0.42 10.2 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|147921682|ref|YP_684498.1| - 0.0009 18.1 0.8 0.66 8.7 0.1 2.6 2 0 0 2 2 2 2 NB-ARC domain AAA_30 PF13604.1 gi|147921682|ref|YP_684498.1| - 0.00095 18.7 0.0 1.7 8.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|147921682|ref|YP_684498.1| - 0.0011 19.1 2.4 3.1 7.9 0.1 3.7 3 2 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|147921682|ref|YP_684498.1| - 0.0014 17.7 5.1 2.1 7.2 0.0 4.4 5 0 0 5 5 5 1 AAA ATPase domain PduV-EutP PF10662.4 gi|147921682|ref|YP_684498.1| - 0.0016 17.9 0.0 1.3 8.5 0.0 3.0 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|147921682|ref|YP_684498.1| - 0.002 17.6 0.8 0.9 9.1 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|147921682|ref|YP_684498.1| - 0.006 15.7 0.0 0.079 12.0 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin NACHT PF05729.7 gi|147921682|ref|YP_684498.1| - 0.0072 16.0 0.1 2.5 7.7 0.0 3.1 3 0 0 3 3 3 1 NACHT domain PhoH PF02562.11 gi|147921682|ref|YP_684498.1| - 0.01 15.0 0.3 3.8 6.6 0.1 2.9 2 1 0 2 2 2 0 PhoH-like protein MMR_HSR1 PF01926.18 gi|147921682|ref|YP_684498.1| - 0.014 15.3 4.5 0.16 11.9 0.2 3.2 3 2 1 4 4 3 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|147921682|ref|YP_684498.1| - 0.017 14.6 0.0 6.3 6.2 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|147921682|ref|YP_684498.1| - 0.019 15.2 5.0 0.51 10.6 0.5 2.5 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|147921682|ref|YP_684498.1| - 0.028 13.9 0.3 1.8 8.1 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DZR PF12773.2 gi|147921682|ref|YP_684498.1| - 0.028 14.2 0.4 0.052 13.3 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon AAA_18 PF13238.1 gi|147921682|ref|YP_684498.1| - 0.031 14.5 0.1 5.9 7.2 0.0 3.1 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|147921682|ref|YP_684498.1| - 0.048 13.0 2.5 1.4 8.2 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|147921682|ref|YP_684498.1| - 0.049 13.0 0.4 7.4 5.9 0.0 3.4 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|147921682|ref|YP_684498.1| - 0.053 13.2 0.4 5 6.9 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain Miro PF08477.8 gi|147921682|ref|YP_684498.1| - 0.094 13.2 0.3 16 6.0 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein AAA_33 PF13671.1 gi|147921682|ref|YP_684498.1| - 0.12 12.2 1.5 1.7 8.4 0.1 3.1 3 1 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|147921682|ref|YP_684498.1| - 0.12 12.0 1.1 9.6 5.8 0.1 2.6 2 0 0 2 2 2 0 Archaeal ATPase cobW PF02492.14 gi|147921682|ref|YP_684498.1| - 0.16 11.4 3.7 9.9 5.5 0.1 3.3 4 0 0 4 4 4 0 CobW/HypB/UreG, nucleotide-binding domain RNA_POL_M_15KD PF02150.11 gi|147921682|ref|YP_684498.1| - 0.16 11.6 0.6 19 5.0 0.1 2.5 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|147921682|ref|YP_684498.1| - 1.7 7.9 6.9 3.8 6.8 4.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|147921682|ref|YP_684498.1| - 3.1 7.3 6.1 6.4 6.4 4.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain AAA_10 PF12846.2 gi|147921682|ref|YP_684498.1| - 3.2 7.1 6.8 3.1 7.1 0.2 3.3 3 1 0 3 3 3 0 AAA-like domain zf-HC2 PF13490.1 gi|147921682|ref|YP_684498.1| - 8.6 6.4 6.0 10 6.1 0.1 3.6 4 0 0 4 4 4 0 Putative zinc-finger Hydrolase PF00702.21 gi|147921683|ref|YP_684497.1| - 3.5e-15 57.0 0.1 6.4e-15 56.1 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147921683|ref|YP_684497.1| - 1e-08 35.6 0.1 2e-08 34.6 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|147921683|ref|YP_684497.1| - 0.01 15.6 0.0 0.071 13.0 0.0 2.2 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|147921683|ref|YP_684497.1| - 0.011 15.3 0.0 0.63 9.5 0.0 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|147921683|ref|YP_684497.1| - 0.029 14.6 0.0 0.59 10.3 0.0 2.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase TrmB PF01978.14 gi|147921683|ref|YP_684497.1| - 0.034 13.8 0.1 0.1 12.3 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|147921683|ref|YP_684497.1| - 0.11 12.0 0.1 0.47 10.0 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|147921684|ref|YP_684496.1| - 0.016 15.3 0.0 0.038 14.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MCM PF00493.18 gi|147921684|ref|YP_684496.1| - 0.04 12.7 1.1 0.11 11.2 0.6 1.6 1 1 1 2 2 2 0 MCM2/3/5 family HTH_34 PF13601.1 gi|147921684|ref|YP_684496.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|147921684|ref|YP_684496.1| - 0.056 13.7 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain RPN7 PF10602.4 gi|147921684|ref|YP_684496.1| - 0.073 12.4 0.3 6 6.2 0.0 2.2 2 0 0 2 2 2 0 26S proteasome subunit RPN7 FeoC PF09012.5 gi|147921684|ref|YP_684496.1| - 0.16 11.6 0.2 0.32 10.7 0.1 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator CarboxypepD_reg PF13620.1 gi|147921685|ref|YP_684495.1| - 3.2e-29 100.8 13.9 1.7e-10 40.7 0.0 4.3 4 1 0 4 4 4 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|147921685|ref|YP_684495.1| - 3.1e-14 52.7 0.7 0.0017 18.3 0.1 3.8 3 1 0 3 3 3 3 Domain of unknown function (DUF4480) Cna_B PF05738.8 gi|147921685|ref|YP_684495.1| - 3.7e-11 42.6 3.1 0.011 15.4 0.1 4.1 4 0 0 4 4 4 3 Cna protein B-type domain DUF4198 PF10670.4 gi|147921685|ref|YP_684495.1| - 1.9e-07 31.3 2.9 0.1 12.6 0.0 3.7 4 0 0 4 4 4 3 Domain of unknown function (DUF4198) MG1 PF11974.3 gi|147921685|ref|YP_684495.1| - 3.9e-07 30.5 0.0 0.28 11.7 0.0 3.9 2 1 1 4 4 4 2 Alpha-2-macroglobulin MG1 domain Dioxygenase_C PF00775.16 gi|147921685|ref|YP_684495.1| - 1.1e-06 27.9 1.8 0.00086 18.6 0.2 4.2 4 1 0 4 4 4 1 Dioxygenase fn3_3 PF14686.1 gi|147921685|ref|YP_684495.1| - 1.7e-06 28.0 6.1 0.039 14.0 0.1 3.7 3 1 0 3 3 3 2 Polysaccharide lyase family 4, domain II DUF2012 PF09430.5 gi|147921685|ref|YP_684495.1| - 2.1e-05 24.3 0.0 0.008 16.0 0.0 3.2 3 0 0 3 3 3 1 Protein of unknown function (DUF2012) DUF3823 PF12866.2 gi|147921685|ref|YP_684495.1| - 0.0062 16.0 0.7 2.1 7.7 0.1 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF3823) DUF290 PF01060.18 gi|147921685|ref|YP_684495.1| - 0.016 15.2 0.8 1.2 9.1 0.0 3.2 3 0 0 3 3 3 0 Transthyretin-like family Pex14_N PF04695.8 gi|147921685|ref|YP_684495.1| - 0.02 14.9 0.1 0.035 14.1 0.1 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Pollen_Ole_e_I PF01190.12 gi|147921685|ref|YP_684495.1| - 0.065 13.0 0.1 2.7 7.9 0.0 3.0 3 0 0 3 3 3 0 Pollen proteins Ole e I like Bunya_NS-S_2 PF03231.8 gi|147921685|ref|YP_684495.1| - 0.11 11.0 0.0 0.19 10.2 0.0 1.3 1 0 0 1 1 1 0 Bunyavirus non-structural protein NS-S DUF1180 PF06679.7 gi|147921685|ref|YP_684495.1| - 0.73 9.7 3.8 1.6 8.6 2.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) DUF824 PF05688.6 gi|147921685|ref|YP_684495.1| - 1.4 8.6 11.1 5.1 6.8 0.0 5.5 7 0 0 7 7 7 0 Salmonella repeat of unknown function (DUF824) Pyocin_S PF06958.7 gi|147921685|ref|YP_684495.1| - 1.4 9.2 7.4 3.9 7.8 3.9 2.4 2 0 0 2 2 2 0 S-type Pyocin Alpha_GJ PF03229.8 gi|147921685|ref|YP_684495.1| - 1.8 8.8 6.9 7.4 6.9 4.8 2.0 1 0 0 1 1 1 0 Alphavirus glycoprotein J Sod_Cu PF00080.15 gi|147921686|ref|YP_684494.1| - 9.8e-44 148.9 0.6 1.1e-43 148.7 0.4 1.0 1 0 0 1 1 1 1 Copper/zinc superoxide dismutase (SODC) UPF0113 PF03657.8 gi|147921687|ref|YP_684493.1| - 3.8e-22 78.6 0.1 4.3e-22 78.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) PUA PF01472.15 gi|147921687|ref|YP_684493.1| - 1.3e-07 31.2 0.2 6.2e-07 29.0 0.2 1.9 2 0 0 2 2 2 1 PUA domain Nol1_Nop2_Fmu PF01189.12 gi|147921688|ref|YP_684492.1| - 1e-67 228.5 0.0 1.2e-67 228.3 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family FtsJ PF01728.14 gi|147921688|ref|YP_684492.1| - 4.7e-07 29.9 0.0 7.9e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|147921688|ref|YP_684492.1| - 2.4e-06 27.2 0.0 5e-06 26.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921688|ref|YP_684492.1| - 9.7e-06 26.1 0.0 2e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|147921688|ref|YP_684492.1| - 1.7e-05 24.8 0.0 2.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|147921688|ref|YP_684492.1| - 0.0022 17.3 0.0 0.0034 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|147921688|ref|YP_684492.1| - 0.011 14.7 0.0 0.019 13.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|147921688|ref|YP_684492.1| - 0.018 14.1 0.1 1 8.4 0.0 2.6 3 0 0 3 3 3 0 Putative methyltransferase POR PF01558.13 gi|147921688|ref|YP_684492.1| - 0.087 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase PCMT PF01135.14 gi|147921688|ref|YP_684492.1| - 0.093 12.2 0.0 0.24 10.9 0.0 1.6 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RibD_C PF01872.12 gi|147921689|ref|YP_684491.1| - 3.4e-53 180.2 0.3 3.8e-53 180.0 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DNA_pol_B PF00136.16 gi|147921691|ref|YP_684489.1| - 2.5e-69 234.2 0.0 3.7e-69 233.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|147921691|ref|YP_684489.1| - 7e-20 71.1 1.2 1.2e-19 70.3 0.8 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.8 gi|147921691|ref|YP_684489.1| - 0.0017 17.1 0.4 0.063 11.9 0.0 2.5 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral RNase_H_2 PF13482.1 gi|147921691|ref|YP_684489.1| - 0.025 14.3 0.0 0.2 11.4 0.0 2.5 1 1 0 1 1 1 0 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|147921691|ref|YP_684489.1| - 0.066 12.7 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF3299 PF11736.3 gi|147921692|ref|YP_684488.1| - 0.18 11.7 0.7 0.85 9.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3299) DUF1628 PF07790.6 gi|147921692|ref|YP_684488.1| - 0.36 11.6 3.1 0.86 10.4 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1628) PKD PF00801.15 gi|147921693|ref|YP_684487.1| - 1.3e-16 60.0 7.2 3e-16 58.9 5.0 1.7 1 1 0 1 1 1 1 PKD domain Big_5 PF13205.1 gi|147921693|ref|YP_684487.1| - 0.0087 16.6 2.5 0.014 15.9 1.7 1.3 1 0 0 1 1 1 1 Bacterial Ig-like domain DUF1388 PF07142.7 gi|147921693|ref|YP_684487.1| - 0.045 13.4 21.0 0.15 11.7 5.7 2.6 1 1 1 2 2 2 0 Repeat of unknown function (DUF1388) Big_3_4 PF13754.1 gi|147921693|ref|YP_684487.1| - 0.11 12.8 11.1 0.044 14.1 5.7 1.8 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) He_PIG PF05345.7 gi|147921693|ref|YP_684487.1| - 3.1 7.9 12.6 0.54 10.3 5.4 2.3 2 1 0 2 2 2 0 Putative Ig domain DUF3185 PF11381.3 gi|147921696|ref|YP_684484.1| - 6.2e-05 22.6 9.2 0.19 11.5 4.6 2.4 1 1 2 3 3 3 2 Protein of unknown function (DUF3185) DUF373 PF04123.8 gi|147921696|ref|YP_684484.1| - 0.00036 19.6 1.4 0.00038 19.5 1.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF4203 PF13886.1 gi|147921696|ref|YP_684484.1| - 0.00038 19.9 1.8 0.0004 19.9 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4203) DUF4131 PF13567.1 gi|147921696|ref|YP_684484.1| - 0.0017 17.7 0.5 0.0018 17.7 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF308 PF03729.8 gi|147921696|ref|YP_684484.1| - 0.0049 16.8 4.4 0.0057 16.6 3.0 1.1 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) NfeD PF01957.13 gi|147921696|ref|YP_684484.1| - 0.008 16.3 2.7 0.008 16.3 1.9 1.0 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF1206 PF06724.6 gi|147921696|ref|YP_684484.1| - 0.0087 15.7 5.4 0.073 12.8 0.0 2.1 2 0 0 2 2 2 1 Domain of Unknown Function (DUF1206) PIRT PF15099.1 gi|147921696|ref|YP_684484.1| - 0.017 14.3 2.1 0.031 13.5 1.5 1.4 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family DUF1212 PF06738.7 gi|147921696|ref|YP_684484.1| - 0.018 14.5 1.2 0.02 14.3 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) DUF202 PF02656.10 gi|147921696|ref|YP_684484.1| - 0.018 15.2 7.8 0.018 15.2 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Lactate_perm PF02652.9 gi|147921696|ref|YP_684484.1| - 0.018 13.5 0.2 0.02 13.4 0.1 1.0 1 0 0 1 1 1 0 L-lactate permease Cation_efflux PF01545.16 gi|147921696|ref|YP_684484.1| - 0.019 14.0 1.1 0.02 13.9 0.8 1.0 1 0 0 1 1 1 0 Cation efflux family UPF0104 PF03706.8 gi|147921696|ref|YP_684484.1| - 0.037 13.2 2.1 0.04 13.2 1.5 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF981 PF06168.6 gi|147921696|ref|YP_684484.1| - 0.041 13.6 2.5 0.049 13.4 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF981) DUF3040 PF11239.3 gi|147921696|ref|YP_684484.1| - 0.062 13.3 7.0 0.081 12.9 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Exosortase_EpsH PF09721.5 gi|147921696|ref|YP_684484.1| - 0.076 12.2 4.6 0.092 11.9 3.2 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) DUF4199 PF13858.1 gi|147921696|ref|YP_684484.1| - 0.11 12.4 1.5 0.13 12.2 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) Neurensin PF14927.1 gi|147921696|ref|YP_684484.1| - 0.29 10.4 4.5 1.1 8.6 2.3 1.9 1 1 1 2 2 2 0 Neurensin Ycf66_N PF07444.6 gi|147921696|ref|YP_684484.1| - 0.31 10.7 3.2 1 9.1 2.3 1.7 1 1 0 1 1 1 0 Ycf66 protein N-terminus DUF2207 PF09972.4 gi|147921696|ref|YP_684484.1| - 0.34 9.4 2.7 0.36 9.3 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CSF-1 PF05337.6 gi|147921696|ref|YP_684484.1| - 0.51 9.6 1.9 0.7 9.1 0.0 1.8 2 0 0 2 2 2 0 Macrophage colony stimulating factor-1 (CSF-1) Syndecan PF01034.15 gi|147921696|ref|YP_684484.1| - 0.55 9.9 7.6 0.75 9.4 0.0 2.1 1 1 1 2 2 2 0 Syndecan domain DUF973 PF06157.6 gi|147921696|ref|YP_684484.1| - 1 8.2 5.5 1.2 8.0 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF2198 PF09964.4 gi|147921696|ref|YP_684484.1| - 1.3 8.8 4.9 2.5 7.9 3.4 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) SdpI PF13630.1 gi|147921696|ref|YP_684484.1| - 2.8 7.7 6.7 3.5 7.4 4.6 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Ribosomal_L7Ae PF01248.21 gi|147921697|ref|YP_684483.1| - 2e-27 94.5 0.6 2.3e-27 94.3 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.10 gi|147921697|ref|YP_684483.1| - 0.016 15.4 0.1 0.018 15.2 0.1 1.3 1 0 0 1 1 1 0 eRF1 domain 3 PELOTA_1 PF15608.1 gi|147921697|ref|YP_684483.1| - 0.032 13.9 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain DUF1269 PF06897.7 gi|147921697|ref|YP_684483.1| - 0.095 12.7 1.1 4 7.5 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|147921698|ref|YP_684482.1| - 1.2e-28 98.6 1.2 1.2e-28 98.5 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|297616210|ref|YP_003710353.1| - 8.3e-21 73.6 0.9 8.9e-21 73.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|297616210|ref|YP_003710353.1| - 3.4e-07 29.7 2.8 4.4e-07 29.4 1.9 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ecl1 PF12855.2 gi|297616210|ref|YP_003710353.1| - 0.00053 19.2 0.6 0.00089 18.5 0.4 1.3 1 0 0 1 1 1 1 Life-span regulatory factor DUF2175 PF09943.4 gi|297616210|ref|YP_003710353.1| - 0.0045 17.0 1.6 0.0047 16.9 0.6 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) ICAM_N PF03921.9 gi|297616210|ref|YP_003710353.1| - 0.017 14.5 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain YHS PF04945.8 gi|297616210|ref|YP_003710353.1| - 0.026 14.3 0.4 0.04 13.7 0.3 1.2 1 0 0 1 1 1 0 YHS domain zf-MYND PF01753.13 gi|297616210|ref|YP_003710353.1| - 0.051 13.4 0.0 0.097 12.5 0.0 1.5 1 1 0 1 1 1 0 MYND finger Fer4 PF00037.22 gi|297616210|ref|YP_003710353.1| - 0.066 12.8 1.1 0.76 9.4 0.2 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain zinc_ribbon_2 PF13240.1 gi|297616210|ref|YP_003710353.1| - 0.17 11.4 0.4 0.17 11.4 0.3 1.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|297616210|ref|YP_003710353.1| - 0.57 9.4 2.9 0.45 9.8 0.2 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF2256 PF10013.4 gi|297616210|ref|YP_003710353.1| - 0.69 9.7 4.0 6.4 6.6 0.4 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF329 PF03884.9 gi|297616210|ref|YP_003710353.1| - 1.3 8.6 4.7 21 4.7 3.3 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-HIT PF04438.11 gi|297616210|ref|YP_003710353.1| - 5.5 6.7 7.1 58 3.4 4.9 2.1 1 1 0 1 1 1 0 HIT zinc finger NDK PF00334.14 gi|147921699|ref|YP_684481.1| - 2.1e-59 199.1 0.0 2.4e-59 198.9 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU PF00009.22 gi|147921700|ref|YP_684480.1| - 1.3e-32 112.7 0.1 1.6e-31 109.2 0.0 2.6 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|147921700|ref|YP_684480.1| - 7.7e-26 90.1 1.7 2.1e-25 88.7 1.2 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|147921700|ref|YP_684480.1| - 9.2e-17 60.4 0.8 9.2e-17 60.4 0.6 2.9 3 0 0 3 3 3 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|147921700|ref|YP_684480.1| - 7.4e-09 35.6 0.2 7.4e-09 35.6 0.1 3.6 3 1 1 4 4 4 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|147921700|ref|YP_684480.1| - 3.7e-07 30.1 1.3 4.2e-06 26.7 0.0 3.0 3 1 0 3 3 3 1 50S ribosome-binding GTPase Miro PF08477.8 gi|147921700|ref|YP_684480.1| - 3.1e-05 24.4 0.1 0.00024 21.5 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein Dynamin_N PF00350.18 gi|147921700|ref|YP_684480.1| - 0.0059 16.4 0.3 0.34 10.6 0.0 3.0 3 0 0 3 3 3 1 Dynamin family PduV-EutP PF10662.4 gi|147921700|ref|YP_684480.1| - 0.049 13.1 0.7 0.6 9.5 0.0 3.0 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|147921700|ref|YP_684480.1| - 0.067 12.7 0.5 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|147921700|ref|YP_684480.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|147921700|ref|YP_684480.1| - 0.14 11.3 0.0 0.47 9.6 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 NAD_binding_1 PF00175.16 gi|147921701|ref|YP_684479.1| - 1.8e-25 89.6 0.0 3.1e-25 88.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|147921701|ref|YP_684479.1| - 7.8e-13 48.4 0.0 1.2e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain FAD_binding_8 PF08022.7 gi|147921701|ref|YP_684479.1| - 5.6e-06 26.1 0.1 1.3e-05 24.9 0.0 1.7 1 1 0 1 1 1 1 FAD-binding domain NAD_binding_6 PF08030.7 gi|147921701|ref|YP_684479.1| - 5.9e-05 23.0 0.0 0.0038 17.1 0.0 2.2 1 1 1 2 2 2 1 Ferric reductase NAD binding domain Topo-VIb_trans PF09239.6 gi|147921702|ref|YP_684478.1| - 4.6e-65 218.0 0.0 7.3e-65 217.3 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|147921702|ref|YP_684478.1| - 9.4e-13 47.8 0.0 1.7e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|147921702|ref|YP_684478.1| - 1.5e-10 40.8 0.0 2.6e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TarH PF02203.10 gi|147921702|ref|YP_684478.1| - 0.015 15.1 1.1 0.027 14.3 0.7 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue FbpA PF05833.6 gi|147921702|ref|YP_684478.1| - 0.085 11.3 1.2 0.16 10.4 0.0 2.0 3 0 0 3 3 3 0 Fibronectin-binding protein A N-terminus (FbpA) CFEM PF05730.6 gi|147921702|ref|YP_684478.1| - 0.15 11.8 0.2 0.28 11.0 0.1 1.4 1 0 0 1 1 1 0 CFEM domain AAA_13 PF13166.1 gi|147921702|ref|YP_684478.1| - 0.29 9.5 0.9 0.41 9.0 0.6 1.1 1 0 0 1 1 1 0 AAA domain TP6A_N PF04406.9 gi|147921703|ref|YP_684477.1| - 2.4e-18 65.5 0.0 4.5e-18 64.6 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase PAS_9 PF13426.1 gi|147921704|ref|YP_684476.1| - 3.2e-60 200.9 0.1 1.2e-22 80.2 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|147921704|ref|YP_684476.1| - 2.2e-43 146.7 0.0 2e-21 76.0 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|147921704|ref|YP_684476.1| - 6.7e-38 128.9 0.0 5.7e-16 58.3 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|147921704|ref|YP_684476.1| - 3.6e-37 126.3 0.1 8.7e-12 44.9 0.0 3.6 4 0 0 4 4 4 3 PAS fold HisKA_2 PF07568.7 gi|147921704|ref|YP_684476.1| - 2.3e-26 91.4 2.4 2.3e-26 91.4 1.6 2.4 2 0 0 2 2 2 1 Histidine kinase PAS_8 PF13188.1 gi|147921704|ref|YP_684476.1| - 1.8e-22 78.3 0.0 1.2e-07 31.3 0.0 3.7 3 0 0 3 3 3 3 PAS domain PAS_10 PF13596.1 gi|147921704|ref|YP_684476.1| - 1.2e-15 57.7 0.0 5.7e-09 36.1 0.0 3.3 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.21 gi|147921704|ref|YP_684476.1| - 2.4e-13 49.7 0.0 8.8e-13 47.9 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|147921704|ref|YP_684476.1| - 1.4e-05 25.1 0.0 0.25 11.3 0.0 4.5 3 2 0 3 3 3 2 PAS fold HWE_HK PF07536.9 gi|147921704|ref|YP_684476.1| - 1.6e-05 25.2 0.2 5.7e-05 23.4 0.1 2.1 1 0 0 1 1 1 1 HWE histidine kinase HATPase_c_2 PF13581.1 gi|147921704|ref|YP_684476.1| - 6e-05 22.8 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147921704|ref|YP_684476.1| - 0.0037 16.9 0.0 0.0079 15.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1100 PF06500.6 gi|147921705|ref|YP_684475.1| - 2.4e-19 69.2 0.0 3.5e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) Abhydrolase_5 PF12695.2 gi|147921705|ref|YP_684475.1| - 5e-13 49.0 0.0 1.3e-12 47.6 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|147921705|ref|YP_684475.1| - 3.7e-09 36.8 0.0 6.7e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|147921705|ref|YP_684475.1| - 9.7e-08 31.9 0.0 1.4e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S9 PF00326.16 gi|147921705|ref|YP_684475.1| - 1.2e-07 31.1 0.0 2.5e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|147921705|ref|YP_684475.1| - 0.00013 21.2 0.0 0.0034 16.7 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|147921705|ref|YP_684475.1| - 0.0037 16.8 0.0 0.39 10.2 0.0 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|147921705|ref|YP_684475.1| - 0.016 14.6 0.0 0.034 13.5 0.0 1.6 2 0 0 2 2 2 0 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|147921705|ref|YP_684475.1| - 0.021 13.3 0.0 0.036 12.5 0.0 1.3 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) Exo5 PF09810.4 gi|147921706|ref|YP_684474.1| - 9.2e-57 192.6 0.1 5.9e-56 190.0 0.1 2.1 1 1 0 1 1 1 1 Exonuclease V - a 5' deoxyribonuclease PDDEXK_1 PF12705.2 gi|147921706|ref|YP_684474.1| - 2.4e-10 40.2 0.1 9.9e-10 38.2 0.0 1.9 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|147921706|ref|YP_684474.1| - 0.0044 16.9 0.0 0.57 10.0 0.0 2.9 2 1 0 2 2 2 1 Domain of unknown function DUF83 Thioredoxin_2 PF13098.1 gi|147921707|ref|YP_684473.1| - 8.4e-14 51.7 0.0 4.6e-13 49.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain YfiO PF13525.1 gi|147921707|ref|YP_684473.1| - 3.5e-07 29.9 1.5 6.6e-07 28.9 1.0 1.4 1 1 0 1 1 1 1 Outer membrane lipoprotein Thioredoxin_7 PF13899.1 gi|147921707|ref|YP_684473.1| - 1.2e-06 28.4 0.0 1.9e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|147921707|ref|YP_684473.1| - 1.9e-06 27.4 0.0 4.1e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|147921707|ref|YP_684473.1| - 5.1e-06 26.5 0.1 0.088 12.9 0.0 2.5 1 1 1 2 2 2 2 Thioredoxin-like TPR_18 PF13512.1 gi|147921707|ref|YP_684473.1| - 0.00074 19.5 0.7 0.0021 18.1 0.4 1.6 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147921707|ref|YP_684473.1| - 0.0015 18.8 0.9 0.27 11.7 0.0 2.7 2 1 0 2 2 2 1 Tetratricopeptide repeat Redoxin PF08534.5 gi|147921707|ref|YP_684473.1| - 0.0036 16.8 0.0 0.21 11.1 0.0 2.2 1 1 1 2 2 2 1 Redoxin TPR_16 PF13432.1 gi|147921707|ref|YP_684473.1| - 0.0044 17.6 0.0 0.02 15.5 0.0 2.0 1 1 1 2 2 2 1 Tetratricopeptide repeat Thioredox_DsbH PF03190.10 gi|147921707|ref|YP_684473.1| - 0.0047 16.6 0.0 0.0086 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 TPR_2 PF07719.12 gi|147921707|ref|YP_684473.1| - 0.014 15.2 0.0 0.15 12.0 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat AhpC-TSA PF00578.16 gi|147921707|ref|YP_684473.1| - 0.064 12.9 0.0 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 AhpC/TSA family TPR_8 PF13181.1 gi|147921707|ref|YP_684473.1| - 0.11 12.2 0.1 0.51 10.2 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat DNA_alkylation PF08713.6 gi|147921708|ref|YP_684472.1| - 1.7e-37 129.0 1.9 2.1e-37 128.6 1.3 1.1 1 0 0 1 1 1 1 DNA alkylation repair enzyme HEAT_2 PF13646.1 gi|147921708|ref|YP_684472.1| - 0.021 15.1 0.1 0.52 10.6 0.1 2.6 1 1 1 2 2 2 0 HEAT repeats Phage_Mu_Gam PF07352.7 gi|147921708|ref|YP_684472.1| - 0.1 12.1 1.0 0.18 11.3 0.7 1.4 1 0 0 1 1 1 0 Bacteriophage Mu Gam like protein Methyltransf_11 PF08241.7 gi|147921709|ref|YP_001218863.1| - 1.8e-22 79.6 0.1 2.7e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|147921709|ref|YP_001218863.1| - 3.8e-17 62.4 0.0 5.8e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|147921709|ref|YP_001218863.1| - 1.7e-14 53.6 0.0 3e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|147921709|ref|YP_001218863.1| - 4.3e-14 53.0 0.1 6.7e-14 52.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|147921709|ref|YP_001218863.1| - 4.5e-14 52.6 0.1 7.4e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|147921709|ref|YP_001218863.1| - 9.8e-13 48.4 0.0 1.5e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|147921709|ref|YP_001218863.1| - 8.7e-11 41.3 0.0 1.2e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_29 PF03141.11 gi|147921709|ref|YP_001218863.1| - 9.5e-09 34.1 0.0 1.3e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|147921709|ref|YP_001218863.1| - 6e-07 29.5 0.1 1.5e-06 28.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|147921709|ref|YP_001218863.1| - 7.4e-05 21.9 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|147921709|ref|YP_001218863.1| - 0.00035 20.2 0.0 0.0006 19.5 0.0 1.4 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_4 PF02390.12 gi|147921709|ref|YP_001218863.1| - 0.00049 19.2 0.0 0.8 8.7 0.0 2.2 2 0 0 2 2 2 2 Putative methyltransferase PCMT PF01135.14 gi|147921709|ref|YP_001218863.1| - 0.00057 19.4 0.0 0.00085 18.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|147921709|ref|YP_001218863.1| - 0.0045 16.3 0.0 0.0067 15.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|147921709|ref|YP_001218863.1| - 0.012 14.9 0.0 0.027 13.8 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase small domain TPMT PF05724.6 gi|147921709|ref|YP_001218863.1| - 0.019 14.3 0.0 0.041 13.3 0.0 1.4 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) FmrO PF07091.6 gi|147921709|ref|YP_001218863.1| - 0.024 13.6 0.1 0.88 8.5 0.0 2.1 1 1 1 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) TehB PF03848.9 gi|147921709|ref|YP_001218863.1| - 0.056 12.6 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB N6_N4_Mtase PF01555.13 gi|147921709|ref|YP_001218863.1| - 0.057 12.9 0.0 5.4 6.4 0.0 2.2 2 0 0 2 2 2 0 DNA methylase RrnaAD PF00398.15 gi|147921709|ref|YP_001218863.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|147921709|ref|YP_001218863.1| - 0.21 10.7 0.0 0.32 10.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RCC1_2 PF13540.1 gi|147921710|ref|YP_684470.1| - 6.3e-22 76.6 38.5 2e-07 30.4 0.5 7.9 7 2 0 7 7 7 6 Regulator of chromosome condensation (RCC1) repeat RCC1 PF00415.13 gi|147921710|ref|YP_684470.1| - 3.1e-15 56.1 40.8 0.00012 22.1 0.2 8.8 8 4 0 8 8 8 5 Regulator of chromosome condensation (RCC1) repeat Lamp PF01299.12 gi|147921710|ref|YP_684470.1| - 0.21 10.6 0.6 0.47 9.5 0.4 1.6 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) ABC2_membrane_2 PF12679.2 gi|147921711|ref|YP_684469.1| - 3.4e-16 58.9 20.1 4.5e-16 58.5 13.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921711|ref|YP_684469.1| - 5e-13 48.7 29.7 1.1e-12 47.6 20.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|147921711|ref|YP_684469.1| - 3.7e-05 23.1 22.2 3.7e-05 23.1 15.4 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147921711|ref|YP_684469.1| - 0.071 12.1 27.9 0.027 13.4 17.2 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|147921712|ref|YP_684468.1| - 9.2e-19 67.3 20.4 2.3e-18 66.0 14.1 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|147921712|ref|YP_684468.1| - 3e-06 26.5 33.6 6.7e-06 25.4 23.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|147921712|ref|YP_684468.1| - 0.023 13.7 23.6 0.0059 15.6 14.3 1.6 2 0 0 2 2 2 0 ABC-2 family transporter protein HisKA_2 PF07568.7 gi|147921715|ref|YP_684465.1| - 1e-32 111.8 2.1 1e-32 111.8 1.4 2.5 3 0 0 3 3 3 1 Histidine kinase PAS_9 PF13426.1 gi|147921715|ref|YP_684465.1| - 7.2e-17 61.6 0.7 9.1e-15 54.9 0.0 3.5 3 1 0 3 3 3 1 PAS domain HAMP PF00672.20 gi|147921715|ref|YP_684465.1| - 3.3e-13 49.6 0.2 3.3e-13 49.6 0.1 2.0 2 0 0 2 2 2 1 HAMP domain PAS PF00989.19 gi|147921715|ref|YP_684465.1| - 3.6e-13 49.2 0.0 1.5e-12 47.2 0.0 2.2 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|147921715|ref|YP_684465.1| - 2.8e-11 43.1 0.4 4.9e-10 39.1 0.3 2.6 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|147921715|ref|YP_684465.1| - 8.6e-10 38.6 0.0 3.4e-08 33.4 0.0 2.6 3 0 0 3 3 3 1 PAS fold Cache_3 PF14827.1 gi|147921715|ref|YP_684465.1| - 1.3e-09 37.9 2.6 1.3e-06 28.3 0.6 4.1 3 1 1 4 4 4 1 Sensory domain of two-component sensor kinase PAS_10 PF13596.1 gi|147921715|ref|YP_684465.1| - 8.1e-08 32.4 4.4 1.4e-05 25.2 0.0 4.6 4 1 1 5 5 4 1 PAS domain HATPase_c_2 PF13581.1 gi|147921715|ref|YP_684465.1| - 8e-06 25.6 0.0 1.8e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|147921715|ref|YP_684465.1| - 4.8e-05 23.0 0.0 0.00017 21.2 0.0 2.0 1 0 0 1 1 1 1 PAS domain HWE_HK PF07536.9 gi|147921715|ref|YP_684465.1| - 0.00013 22.3 0.0 0.00041 20.7 0.0 1.9 1 0 0 1 1 1 1 HWE histidine kinase LuxQ-periplasm PF09308.5 gi|147921715|ref|YP_684465.1| - 0.00071 18.9 4.4 0.0014 17.9 0.8 2.4 2 0 0 2 2 2 1 LuxQ, periplasmic Kinesin-related PF06548.6 gi|147921715|ref|YP_684465.1| - 0.017 13.7 0.6 0.017 13.7 0.4 1.7 2 0 0 2 2 2 0 Kinesin-related TPR_16 PF13432.1 gi|147921718|ref|YP_684462.1| - 2.2e-35 120.5 24.8 2.2e-07 31.3 0.4 7.2 4 3 2 7 7 7 7 Tetratricopeptide repeat TPR_11 PF13414.1 gi|147921718|ref|YP_684462.1| - 1.8e-34 117.2 16.8 4.5e-10 39.0 0.3 6.5 2 2 6 9 9 9 9 TPR repeat TPR_2 PF07719.12 gi|147921718|ref|YP_684462.1| - 2.4e-26 89.4 25.7 0.00017 21.2 1.0 9.8 10 1 1 11 11 10 9 Tetratricopeptide repeat TPR_17 PF13431.1 gi|147921718|ref|YP_684462.1| - 2e-22 77.4 0.5 0.005 16.9 0.0 9.6 9 1 0 9 9 9 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|147921718|ref|YP_684462.1| - 6e-20 69.9 26.2 0.015 15.9 0.0 10.0 2 2 9 11 11 11 6 Tetratricopeptide repeat TPR_19 PF14559.1 gi|147921718|ref|YP_684462.1| - 1.4e-19 70.1 12.4 0.0028 17.9 0.1 7.4 3 3 4 7 7 7 5 Tetratricopeptide repeat TPR_1 PF00515.23 gi|147921718|ref|YP_684462.1| - 4.3e-18 64.0 15.0 0.00014 21.3 0.3 8.8 8 1 1 9 9 9 6 Tetratricopeptide repeat TPR_12 PF13424.1 gi|147921718|ref|YP_684462.1| - 1.2e-14 53.9 23.4 0.00011 22.1 1.2 7.6 5 1 3 8 8 8 4 Tetratricopeptide repeat TPR_8 PF13181.1 gi|147921718|ref|YP_684462.1| - 1.1e-13 49.8 8.6 0.97 9.3 0.1 8.9 9 1 1 10 10 8 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|147921718|ref|YP_684462.1| - 1.6e-11 43.8 12.5 0.72 10.4 0.1 8.3 8 1 1 9 9 8 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|147921718|ref|YP_684462.1| - 2.6e-11 43.4 5.2 0.00054 20.0 0.1 5.6 2 2 3 6 6 6 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_20 PF14561.1 gi|147921718|ref|YP_684462.1| - 1.7e-07 31.2 7.7 3 8.0 0.0 6.8 3 3 5 8 8 7 2 Tetratricopeptide repeat BTAD PF03704.12 gi|147921718|ref|YP_684462.1| - 0.00051 20.3 20.0 0.0093 16.2 0.6 4.3 3 1 1 4 4 4 2 Bacterial transcriptional activator domain TPR_9 PF13371.1 gi|147921718|ref|YP_684462.1| - 0.00054 19.7 20.9 0.0031 17.3 0.2 5.9 4 2 2 6 6 6 2 Tetratricopeptide repeat DUF3856 PF12968.2 gi|147921718|ref|YP_684462.1| - 0.057 13.2 0.8 16 5.3 0.0 4.3 5 1 0 5 5 5 0 Domain of Unknown Function (DUF3856) DUF630 PF04783.7 gi|147921718|ref|YP_684462.1| - 0.067 13.1 5.7 20 5.1 0.0 5.2 4 1 0 4 4 4 0 Protein of unknown function (DUF630) Rapsyn_N PF10579.4 gi|147921718|ref|YP_684462.1| - 0.081 12.7 0.0 0.31 10.8 0.0 2.1 1 1 0 1 1 1 0 Rapsyn N-terminal myristoylation and linker region TPR_15 PF13429.1 gi|147921718|ref|YP_684462.1| - 0.17 10.9 4.6 5 6.0 0.0 3.4 3 1 0 4 4 4 0 Tetratricopeptide repeat MIT PF04212.13 gi|147921718|ref|YP_684462.1| - 0.66 9.8 11.9 9.2 6.2 0.1 6.0 6 1 1 7 7 7 0 MIT (microtubule interacting and transport) domain AIRS_C PF02769.17 gi|147921719|ref|YP_684461.1| - 4.9e-48 163.0 0.3 2.8e-24 85.8 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|147921719|ref|YP_684461.1| - 2.1e-29 101.6 0.2 1.9e-17 63.3 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain PurS PF02700.9 gi|147921719|ref|YP_684461.1| - 3.5e-10 39.6 0.0 0.0029 17.5 0.0 3.6 3 0 0 3 3 3 2 Phosphoribosylformylglycinamidine (FGAM) synthase NLE PF08154.7 gi|147921719|ref|YP_684461.1| - 0.021 14.8 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 NLE (NUC135) domain GATase_5 PF13507.1 gi|147921720|ref|YP_684460.1| - 1.8e-80 269.6 0.0 2e-80 269.4 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|147921720|ref|YP_684460.1| - 3.8e-05 23.1 0.0 7.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|147921720|ref|YP_684460.1| - 0.00047 19.7 0.1 0.0038 16.8 0.1 2.5 3 1 0 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|147921720|ref|YP_684460.1| - 0.0032 16.9 0.0 0.0046 16.4 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Gly_reductase PF09338.6 gi|147921720|ref|YP_684460.1| - 0.02 13.0 0.0 0.026 12.7 0.0 1.1 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits HATPase_c PF02518.21 gi|147921721|ref|YP_684459.1| - 2e-19 69.3 0.1 3.9e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|147921721|ref|YP_684459.1| - 5.6e-14 52.0 0.0 5.6e-14 52.0 0.0 2.2 2 0 0 2 2 2 1 HAMP domain Cache_1 PF02743.13 gi|147921721|ref|YP_684459.1| - 0.00084 18.8 0.1 0.0024 17.4 0.1 1.8 1 0 0 1 1 1 1 Cache domain Cache_3 PF14827.1 gi|147921721|ref|YP_684459.1| - 0.002 18.0 0.8 0.081 12.8 0.2 2.4 2 0 0 2 2 2 1 Sensory domain of two-component sensor kinase HATPase_c_2 PF13581.1 gi|147921721|ref|YP_684459.1| - 0.0097 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|147921721|ref|YP_684459.1| - 0.026 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF221 PF02714.10 gi|147921721|ref|YP_684459.1| - 0.11 11.3 4.5 2.6 6.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function DUF221 YbjQ_1 PF01906.12 gi|147921722|ref|YP_684458.1| - 8.4e-36 122.5 0.1 9.5e-36 122.4 0.1 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|147921722|ref|YP_684458.1| - 0.013 15.3 0.1 0.02 14.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4156) Nramp PF01566.13 gi|147921723|ref|YP_684457.1| - 3.2e-94 315.6 32.1 4.7e-94 315.1 22.3 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF3270 PF11674.3 gi|147921723|ref|YP_684457.1| - 0.99 9.4 4.0 1.5 8.9 0.6 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3270) MgtE_N PF03448.12 gi|147921724|ref|YP_684456.1| - 2.1e-30 105.0 12.0 2.3e-30 104.9 6.6 2.2 2 0 0 2 2 2 1 MgtE intracellular N domain CBS PF00571.23 gi|147921724|ref|YP_684456.1| - 3.1e-19 68.4 4.9 1.1e-08 34.7 0.5 3.6 3 0 0 3 3 3 2 CBS domain PRC PF05239.11 gi|147921724|ref|YP_684456.1| - 1.3e-07 31.3 1.6 0.00082 19.1 0.0 3.3 4 0 0 4 4 4 2 PRC-barrel domain FliG_M PF14841.1 gi|147921724|ref|YP_684456.1| - 1.9e-07 31.0 2.2 0.018 15.0 0.0 3.5 2 1 1 3 3 3 2 FliG middle domain FliG_N PF14842.1 gi|147921724|ref|YP_684456.1| - 0.004 17.2 1.7 0.21 11.7 0.1 2.8 1 1 1 2 2 2 1 FliG N-terminal domain PYRIN PF02758.11 gi|147921724|ref|YP_684456.1| - 0.011 15.4 1.2 3.3 7.4 0.1 3.2 1 1 2 3 3 3 0 PAAD/DAPIN/Pyrin domain Transket_pyr PF02779.19 gi|147921724|ref|YP_684456.1| - 0.16 11.4 0.0 0.4 10.1 0.0 1.6 2 0 0 2 2 2 0 Transketolase, pyrimidine binding domain AsnC_trans_reg PF01037.16 gi|147921725|ref|YP_684455.1| - 4.9e-18 64.6 0.4 9.2e-18 63.7 0.1 1.6 2 0 0 2 2 1 1 AsnC family HTH_24 PF13412.1 gi|147921725|ref|YP_684455.1| - 6.2e-14 51.1 0.5 9.7e-14 50.4 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|147921725|ref|YP_684455.1| - 8.6e-13 47.6 1.1 1.4e-12 46.9 0.8 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|147921725|ref|YP_684455.1| - 2.4e-05 23.9 0.0 3.9e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|147921725|ref|YP_684455.1| - 0.00014 21.5 0.1 0.00031 20.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|147921725|ref|YP_684455.1| - 0.00023 20.7 0.1 0.00046 19.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|147921725|ref|YP_684455.1| - 0.00026 20.4 0.6 0.0006 19.2 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|147921725|ref|YP_684455.1| - 0.00031 20.2 0.1 0.00074 19.0 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|147921725|ref|YP_684455.1| - 0.00041 19.9 0.1 0.00068 19.2 0.1 1.4 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|147921725|ref|YP_684455.1| - 0.00068 19.2 0.1 0.0013 18.3 0.1 1.5 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_Mga PF08280.6 gi|147921725|ref|YP_684455.1| - 0.00096 18.8 0.1 0.0021 17.7 0.0 1.6 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.14 gi|147921725|ref|YP_684455.1| - 0.0015 18.1 0.0 0.0039 16.8 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|147921725|ref|YP_684455.1| - 0.0021 18.3 0.1 0.0039 17.4 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|147921725|ref|YP_684455.1| - 0.0046 16.4 0.1 0.0089 15.5 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_28 PF13518.1 gi|147921725|ref|YP_684455.1| - 0.0052 16.7 0.1 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|147921725|ref|YP_684455.1| - 0.0083 15.6 0.1 0.015 14.8 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain RepL PF05732.6 gi|147921725|ref|YP_684455.1| - 0.012 14.8 0.1 0.017 14.3 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MarR PF01047.17 gi|147921725|ref|YP_684455.1| - 0.012 15.2 0.2 0.023 14.3 0.1 1.4 1 0 0 1 1 1 0 MarR family Sulfolobus_pRN PF05584.6 gi|147921725|ref|YP_684455.1| - 0.016 15.1 0.2 0.045 13.7 0.2 1.7 2 0 0 2 2 1 0 Sulfolobus plasmid regulatory protein EAP30 PF04157.11 gi|147921725|ref|YP_684455.1| - 0.024 13.7 0.0 0.076 12.1 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_3 PF01381.17 gi|147921725|ref|YP_684455.1| - 0.038 13.8 0.4 0.085 12.7 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix Replic_Relax PF13814.1 gi|147921725|ref|YP_684455.1| - 0.041 13.7 0.1 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF2250 PF10007.4 gi|147921725|ref|YP_684455.1| - 0.062 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|147921725|ref|YP_684455.1| - 0.062 13.3 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF977 PF06163.6 gi|147921725|ref|YP_684455.1| - 0.063 13.0 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_31 PF13560.1 gi|147921725|ref|YP_684455.1| - 0.079 13.1 1.8 0.16 12.1 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|147921725|ref|YP_684455.1| - 0.079 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_19 PF12844.2 gi|147921725|ref|YP_684455.1| - 0.08 12.9 1.2 0.17 11.9 0.2 1.9 1 1 1 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|147921725|ref|YP_684455.1| - 0.095 12.2 0.1 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Vps35 PF03635.12 gi|147921725|ref|YP_684455.1| - 0.11 10.6 0.0 0.13 10.3 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 HTH_Tnp_Tc3_2 PF01498.13 gi|147921725|ref|YP_684455.1| - 0.13 12.3 0.4 0.22 11.6 0.3 1.4 1 0 0 1 1 1 0 Transposase FeoC PF09012.5 gi|147921725|ref|YP_684455.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|147921725|ref|YP_684455.1| - 0.15 11.5 0.5 0.27 10.8 0.4 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain E1-E2_ATPase PF00122.15 gi|147921726|ref|YP_684454.1| - 6.5e-70 234.7 3.2 6.5e-70 234.7 2.2 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|147921726|ref|YP_684454.1| - 1.9e-52 177.4 5.5 1.9e-52 177.4 3.8 1.8 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|147921726|ref|YP_684454.1| - 1.1e-32 114.2 0.0 2.9e-32 112.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|147921726|ref|YP_684454.1| - 1.7e-18 67.5 0.3 5.6e-18 65.7 0.1 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|147921726|ref|YP_684454.1| - 3.6e-16 58.3 0.0 8e-16 57.2 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|147921726|ref|YP_684454.1| - 1.1e-13 50.8 0.0 5.4e-13 48.7 0.0 2.0 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|147921726|ref|YP_684454.1| - 3.4e-08 33.3 0.2 6.4e-05 22.6 0.2 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase SWIM PF04434.12 gi|147921727|ref|YP_684453.1| - 1.4e-05 24.4 0.9 2.5e-05 23.6 0.6 1.4 1 0 0 1 1 1 1 SWIM zinc finger DUF2769 PF10967.3 gi|147921728|ref|YP_684452.1| - 2.5e-19 69.2 9.4 3.1e-19 69.0 6.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2769) Cys_rich_CWC PF14375.1 gi|147921728|ref|YP_684452.1| - 0.057 13.3 5.1 0.26 11.2 0.2 2.4 2 0 0 2 2 2 0 Cysteine-rich CWC Radical_SAM PF04055.16 gi|147921729|ref|YP_684451.1| - 3.1e-11 43.7 0.1 1.3e-10 41.7 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|147921729|ref|YP_684451.1| - 3.1e-09 37.0 0.0 5.5e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|147921729|ref|YP_684451.1| - 3.3e-07 30.3 0.0 7.6e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain SGL PF08450.7 gi|147921730|ref|YP_684450.1| - 0.003 16.9 1.7 0.91 8.8 0.1 2.4 2 0 0 2 2 2 2 SMP-30/Gluconolaconase/LRE-like region Arylesterase PF01731.15 gi|147921730|ref|YP_684450.1| - 1.6 8.7 13.3 0.9 9.5 0.1 4.8 4 2 3 7 7 7 0 Arylesterase PQQ_3 PF13570.1 gi|147921730|ref|YP_684450.1| - 5.5 7.3 14.7 5.9 7.3 0.5 5.0 5 0 0 5 5 5 0 PQQ-like domain Pox_E2-like PF04497.7 gi|147921731|ref|YP_684449.1| - 0.043 11.8 0.6 0.054 11.5 0.4 1.0 1 0 0 1 1 1 0 Poxviridae protein IBR PF01485.16 gi|147921731|ref|YP_684449.1| - 0.35 10.7 25.2 9.9e+02 -0.3 1.4 3.0 1 1 1 2 2 2 0 IBR domain Glutaredoxin PF00462.19 gi|147921731|ref|YP_684449.1| - 1.5 8.8 8.4 0.37 10.8 0.7 3.1 3 2 0 3 3 3 0 Glutaredoxin zf-C2HC_2 PF13913.1 gi|147921731|ref|YP_684449.1| - 2.1 8.1 12.4 2.6 7.8 0.1 4.4 4 0 0 4 4 4 0 zinc-finger of a C2HC-type zf-C2H2_6 PF13912.1 gi|147921731|ref|YP_684449.1| - 2.3 8.2 8.0 4.8 7.2 0.2 3.7 4 0 0 4 4 4 0 C2H2-type zinc finger DNA_ligase_ZBD PF03119.11 gi|147921731|ref|YP_684449.1| - 8.1 6.2 11.1 14 5.4 0.3 3.7 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Nitro_FeMo-Co PF02579.12 gi|147921732|ref|YP_684448.1| - 1.6e-20 72.9 0.0 1.8e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Peptidase_C62 PF12380.3 gi|147921732|ref|YP_684448.1| - 0.092 11.5 0.1 0.43 9.3 0.1 1.8 1 1 1 2 2 2 0 Gill-associated viral 3C-like peptidase Radical_SAM PF04055.16 gi|147921733|ref|YP_684447.1| - 3.7e-16 59.7 0.1 1e-15 58.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|147921733|ref|YP_684447.1| - 9.1e-08 32.3 1.5 9.1e-08 32.3 1.0 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|147921733|ref|YP_684447.1| - 2.6e-06 27.4 0.0 6.2e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|147921733|ref|YP_684447.1| - 9.4e-05 22.5 0.0 0.0002 21.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Acetyltransf_CG PF14542.1 gi|147921733|ref|YP_684447.1| - 0.069 13.0 0.1 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase HEPN PF05168.9 gi|147921734|ref|YP_684446.1| - 2.3e-17 62.9 2.9 2.7e-17 62.7 2.0 1.1 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|147921734|ref|YP_684446.1| - 0.024 14.7 2.6 0.17 11.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) Luciferase_N PF05295.6 gi|147921734|ref|YP_684446.1| - 0.036 13.8 0.0 0.089 12.6 0.0 1.6 2 0 0 2 2 2 0 Luciferase/LBP N-terminal domain NTP_transf_2 PF01909.18 gi|147921735|ref|YP_684445.1| - 1.5e-10 41.2 0.1 2.7e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|147921735|ref|YP_684445.1| - 0.029 13.9 0.0 0.062 12.9 0.0 1.6 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Cas_Cas02710 PF09670.5 gi|147921736|ref|YP_684444.1| - 1.8e-05 23.5 0.1 3e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) HTH_20 PF12840.2 gi|147921736|ref|YP_684444.1| - 0.0029 17.3 0.0 0.0065 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|147921736|ref|YP_684444.1| - 0.066 12.8 0.1 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|147921736|ref|YP_684444.1| - 0.6 10.4 2.5 8.7 6.7 0.1 2.9 2 1 1 3 3 3 0 Winged helix DNA-binding domain Lactamase_B_2 PF12706.2 gi|147921737|ref|YP_684443.1| - 1.1e-12 47.8 0.0 8.2e-12 45.0 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|147921737|ref|YP_684443.1| - 1.5e-10 41.0 0.2 3.6e-10 39.7 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|147921737|ref|YP_684443.1| - 2.3e-06 27.3 0.2 5.5e-06 26.1 0.2 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|147921737|ref|YP_684443.1| - 0.0044 16.7 0.1 0.65 9.6 0.0 3.0 2 1 0 2 2 2 1 Beta-lactamase superfamily domain MGDG_synth PF06925.6 gi|147921737|ref|YP_684443.1| - 0.1 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase RNase_T PF00929.19 gi|147921738|ref|YP_684442.1| - 6.6e-12 46.0 0.0 8.4e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Exonuclease HEAT_2 PF13646.1 gi|147921741|ref|YP_684439.1| - 3.3e-07 30.4 1.5 4.8e-07 29.9 1.0 1.2 1 0 0 1 1 1 1 HEAT repeats HEAT_EZ PF13513.1 gi|147921741|ref|YP_684439.1| - 0.001 19.4 0.4 0.0019 18.6 0.3 1.4 1 0 0 1 1 1 1 HEAT-like repeat Adaptin_N PF01602.15 gi|147921741|ref|YP_684439.1| - 0.0028 16.0 0.1 0.0034 15.7 0.0 1.1 1 0 0 1 1 1 1 Adaptin N terminal region HEAT PF02985.17 gi|147921741|ref|YP_684439.1| - 0.01 15.8 0.1 0.38 10.9 0.0 2.4 2 0 0 2 2 2 0 HEAT repeat DUF1401 PF07180.6 gi|147921742|ref|YP_684438.1| - 0.0057 16.4 0.1 0.0071 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1401) HTH_29 PF13551.1 gi|147921744|ref|YP_684435.1| - 5.1e-17 62.0 0.1 8.4e-17 61.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|147921744|ref|YP_684435.1| - 2.2e-14 53.9 2.6 8.9e-14 52.0 0.1 2.4 3 0 0 3 3 3 1 Homeodomain-like domain HTH_33 PF13592.1 gi|147921744|ref|YP_684435.1| - 2.6e-08 33.2 0.0 6.2e-08 32.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|147921744|ref|YP_684435.1| - 3.8e-06 26.3 0.4 0.00011 21.6 0.0 2.7 3 0 0 3 3 3 1 Homeodomain-like domain LZ_Tnp_IS481 PF13011.1 gi|147921744|ref|YP_684435.1| - 0.0014 18.9 0.7 0.0044 17.3 0.2 2.0 1 1 1 2 2 2 1 leucine-zipper of insertion element IS481 HTH_28 PF13518.1 gi|147921744|ref|YP_684435.1| - 0.0038 17.2 0.2 0.05 13.6 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain DDE_3 PF13358.1 gi|147921745|ref|YP_684434.1| - 2.5e-20 72.7 0.0 2.8e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease DDE_1 PF03184.14 gi|147921745|ref|YP_684434.1| - 1.1e-05 24.6 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|147921745|ref|YP_684434.1| - 3.9e-05 23.7 0.0 5.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain N6_N4_Mtase PF01555.13 gi|147921746|ref|YP_684432.1| - 6.2e-33 114.2 0.0 9.8e-33 113.5 0.0 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|147921746|ref|YP_684432.1| - 7.2e-07 29.2 0.0 0.00068 19.6 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|147921746|ref|YP_684432.1| - 0.0018 17.8 0.0 0.16 11.5 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|147921746|ref|YP_684432.1| - 0.039 13.5 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain ResIII PF04851.10 gi|147921747|ref|YP_684431.1| - 1.6e-11 44.3 0.0 3.9e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|147921747|ref|YP_684431.1| - 0.017 14.6 0.2 0.22 11.0 0.0 2.7 3 1 0 3 3 3 0 DEAD/DEAH box helicase MFS_1 PF07690.11 gi|147921748|ref|YP_684430.1| - 0.0029 16.3 0.3 0.0035 16.1 0.2 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily SWIM PF04434.12 gi|147921749|ref|YP_684429.1| - 2.3e-06 26.9 0.0 4.9e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 SWIM zinc finger Acyl-CoA_dh_1 PF00441.19 gi|147921749|ref|YP_684429.1| - 0.017 15.1 0.3 0.034 14.2 0.2 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Fic PF02661.13 gi|147921750|ref|YP_684428.1| - 5.1e-09 36.7 0.0 7.9e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Fic/DOC family Phage_rep_O PF04492.8 gi|147921750|ref|YP_684428.1| - 0.12 12.5 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O SWIM PF04434.12 gi|147921751|ref|YP_684427.1| - 1e-07 31.2 0.2 1.9e-07 30.4 0.2 1.4 1 0 0 1 1 1 1 SWIM zinc finger SNF2_N PF00176.18 gi|147921752|ref|YP_684426.1| - 1.3e-65 221.1 0.1 1.8e-65 220.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DUF3670 PF12419.3 gi|147921752|ref|YP_684426.1| - 3.4e-39 133.5 0.2 9.3e-39 132.0 0.1 1.8 1 0 0 1 1 1 1 SNF2 Helicase protein Helicase_C PF00271.26 gi|147921752|ref|YP_684426.1| - 7.4e-13 48.1 0.0 3.5e-12 46.0 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|147921752|ref|YP_684426.1| - 3.8e-05 23.2 0.0 0.0001 21.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|147921752|ref|YP_684426.1| - 0.11 12.5 0.4 0.42 10.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain AT_hook PF02178.14 gi|147921752|ref|YP_684426.1| - 0.2 11.4 2.9 0.46 10.3 2.0 1.7 1 0 0 1 1 1 0 AT hook motif UPF0150 PF03681.10 gi|147921753|ref|YP_684425.1| - 0.0013 18.3 0.0 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) tRNA-synt_His PF13393.1 gi|147921754|ref|YP_684424.1| - 4.7e-54 183.5 0.0 6.4e-54 183.0 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|147921754|ref|YP_684424.1| - 1.5e-19 70.2 0.1 5.8e-19 68.3 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|147921754|ref|YP_684424.1| - 6.6e-14 51.6 0.1 1.4e-13 50.6 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|147921754|ref|YP_684424.1| - 1.3e-06 27.7 0.0 3e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) EF-hand_1 PF00036.27 gi|147921754|ref|YP_684424.1| - 0.02 14.1 0.0 0.11 11.8 0.0 2.3 2 0 0 2 2 2 0 EF hand EF-hand_5 PF13202.1 gi|147921754|ref|YP_684424.1| - 0.098 12.0 0.4 0.54 9.7 0.0 2.5 3 0 0 3 3 3 0 EF hand ArgJ PF01960.13 gi|147921756|ref|YP_684422.1| - 3.3e-137 457.0 5.1 4e-137 456.7 3.5 1.0 1 0 0 1 1 1 1 ArgJ family CBS PF00571.23 gi|147921757|ref|YP_684421.1| - 1e-33 114.8 3.8 4.6e-17 61.5 0.3 2.1 2 0 0 2 2 2 2 CBS domain CDC48_2 PF02933.12 gi|147921757|ref|YP_684421.1| - 0.045 13.3 0.0 0.37 10.4 0.0 2.3 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 Semialdhyde_dh PF01118.19 gi|147921758|ref|YP_684420.1| - 4e-36 123.9 0.0 7.2e-36 123.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|147921758|ref|YP_684420.1| - 2.5e-24 86.1 0.0 3.5e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.1 gi|147921758|ref|YP_684420.1| - 0.00018 21.5 0.0 0.0006 19.8 0.0 1.9 2 0 0 2 2 2 1 NADH(P)-binding F420_oxidored PF03807.12 gi|147921758|ref|YP_684420.1| - 0.0002 21.7 0.0 0.00052 20.3 0.0 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|147921758|ref|YP_684420.1| - 0.002 18.6 0.0 0.0097 16.4 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|147921758|ref|YP_684420.1| - 0.055 13.2 0.0 0.84 9.3 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DapB_N PF01113.15 gi|147921758|ref|YP_684420.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CTP_transf_2 PF01467.21 gi|147921759|ref|YP_684419.1| - 1.6e-14 54.2 0.2 2.4e-14 53.6 0.1 1.3 1 1 0 1 1 1 1 Cytidylyltransferase Tox-PL-2 PF15643.1 gi|147921759|ref|YP_684419.1| - 0.041 13.8 0.1 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Papain fold toxin 2 Prok-JAB PF14464.1 gi|147921760|ref|YP_684418.1| - 3.1e-10 39.5 0.0 3.8e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Phosphodiest PF01663.17 gi|147921761|ref|YP_684417.1| - 1.6e-30 106.6 0.0 4.9e-30 105.0 0.0 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|147921761|ref|YP_684417.1| - 0.029 14.0 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 PglZ domain ATG2_CAD PF13329.1 gi|147921762|ref|YP_684416.1| - 0.028 13.9 0.0 0.033 13.7 0.0 1.1 1 0 0 1 1 1 0 Autophagy-related protein 2 CAD motif DHHA1 PF02272.14 gi|147921763|ref|YP_684415.1| - 2.4e-15 55.9 0.9 6.1e-15 54.6 0.2 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|147921763|ref|YP_684415.1| - 3.8e-09 36.3 0.3 6.1e-09 35.6 0.2 1.3 1 0 0 1 1 1 1 DHH family Ribosomal_S13_N PF08069.7 gi|147921764|ref|YP_684414.1| - 2.2e-27 94.6 0.4 4.5e-27 93.6 0.3 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|147921764|ref|YP_684414.1| - 4.5e-20 71.2 0.1 6e-20 70.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 KGG PF10685.4 gi|147921765|ref|YP_684413.1| - 3.7e-09 36.2 10.1 0.0081 16.0 1.1 3.7 2 1 1 3 3 3 3 Stress-induced bacterial acidophilic repeat motif LEA_5 PF00477.12 gi|147921765|ref|YP_684413.1| - 4.7e-07 30.0 7.4 6.7e-07 29.5 5.1 1.3 1 0 0 1 1 1 1 Small hydrophilic plant seed protein TUSC2 PF15000.1 gi|147921765|ref|YP_684413.1| - 0.005 16.8 2.7 1.5 8.9 0.1 2.4 1 1 1 2 2 2 2 Tumour suppressor candidate 2 SASP PF00269.15 gi|147921765|ref|YP_684413.1| - 2.1 8.2 7.1 7.2 6.5 0.1 2.3 2 1 0 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type Arginase PF00491.16 gi|147921766|ref|YP_684412.1| - 9.8e-74 248.1 0.0 1.1e-73 247.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family eIF-5a PF01287.15 gi|147921767|ref|YP_684411.1| - 5.4e-15 55.1 0.1 1e-14 54.1 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|147921767|ref|YP_684411.1| - 1.6e-07 31.0 0.0 3e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|147921767|ref|YP_684411.1| - 0.077 12.7 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 KOW motif