# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- CRISPR_Cas2 PF09827.9 gi|261402132|ref|YP_003246356.1| - 5.1e-22 77.9 0.4 6.2e-22 77.6 0.4 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SHOCT PF09851.9 gi|261402132|ref|YP_003246356.1| - 0.0051 16.5 1.1 0.0051 16.5 1.1 1.9 2 0 0 2 2 2 1 Short C-terminal domain GvpG PF05120.12 gi|261402132|ref|YP_003246356.1| - 0.006 16.6 0.0 0.0078 16.2 0.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein G Cas_Cas1 PF01867.16 gi|261402133|ref|YP_003246357.1| - 8.3e-83 277.8 0.8 9.8e-83 277.5 0.8 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF5603 PF18231.1 gi|261402133|ref|YP_003246357.1| - 0.063 13.6 0.4 0.24 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5603) Cas_Cas4 PF01930.17 gi|261402134|ref|YP_003246358.1| - 4.5e-54 182.9 6.8 5.1e-54 182.8 6.8 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|261402134|ref|YP_003246358.1| - 0.00017 21.6 1.2 0.00023 21.2 1.2 1.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DEAD PF00270.29 gi|261402135|ref|YP_003246359.1| - 2.2e-18 66.6 0.0 9e-18 64.7 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|261402135|ref|YP_003246359.1| - 5e-12 46.2 0.7 1.1e-11 45.1 0.1 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|261402135|ref|YP_003246359.1| - 4.9e-09 36.5 2.0 6.2e-07 29.7 0.3 3.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_19 PF13245.6 gi|261402135|ref|YP_003246359.1| - 0.00051 20.4 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Flavi_DEAD PF07652.14 gi|261402135|ref|YP_003246359.1| - 0.002 18.1 0.0 1 9.3 0.0 2.7 3 0 0 3 3 3 2 Flavivirus DEAD domain AAA_30 PF13604.6 gi|261402135|ref|YP_003246359.1| - 0.026 14.3 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rhabdo_ncap_2 PF03216.13 gi|261402135|ref|YP_003246359.1| - 0.046 13.2 0.3 0.07 12.6 0.3 1.2 1 0 0 1 1 1 0 Rhabdovirus nucleoprotein EKLF_TAD1 PF16832.5 gi|261402135|ref|YP_003246359.1| - 0.39 10.6 1.0 0.75 9.7 1.0 1.4 1 0 0 1 1 1 0 Erythroid krueppel-like transcription factor, transactivation 1 Csc2 PF18320.1 gi|261402137|ref|YP_003246361.1| - 1.1e-30 106.6 0.9 1.2e-29 103.2 0.9 2.0 1 1 0 1 1 1 1 Csc2 Crispr HTH_5 PF01022.20 gi|261402139|ref|YP_003246363.1| - 5.1e-07 29.5 1.3 1.1e-06 28.4 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|261402139|ref|YP_003246363.1| - 1.2e-05 25.1 0.3 4.7e-05 23.2 0.2 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|261402139|ref|YP_003246363.1| - 1.3e-05 24.7 0.1 2.8e-05 23.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|261402139|ref|YP_003246363.1| - 6.4e-05 22.8 0.3 0.00015 21.6 0.3 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|261402139|ref|YP_003246363.1| - 0.00075 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 MarR family Cas_APE2256 PF09651.10 gi|261402139|ref|YP_003246363.1| - 0.00097 19.0 0.1 0.002 18.1 0.1 1.6 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_NE0113 PF09623.10 gi|261402139|ref|YP_003246363.1| - 0.001 18.8 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) HTH_27 PF13463.6 gi|261402139|ref|YP_003246363.1| - 0.001 19.5 0.5 0.0042 17.6 0.1 2.2 3 0 0 3 3 2 1 Winged helix DNA-binding domain PheRS_DBD1 PF18552.1 gi|261402139|ref|YP_003246363.1| - 0.0011 18.6 0.0 0.003 17.3 0.0 1.7 1 0 0 1 1 1 1 PheRS DNA binding domain 1 DUF1887 PF09002.11 gi|261402139|ref|YP_003246363.1| - 0.0017 17.1 0.3 0.0023 16.7 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|261402139|ref|YP_003246363.1| - 0.0017 17.3 0.4 0.0023 16.8 0.4 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) MarR PF01047.22 gi|261402139|ref|YP_003246363.1| - 0.0019 18.1 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|261402139|ref|YP_003246363.1| - 0.0041 17.4 0.1 0.01 16.2 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_41 PF14502.6 gi|261402139|ref|YP_003246363.1| - 0.0054 16.4 0.1 0.017 14.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|261402139|ref|YP_003246363.1| - 0.0084 15.6 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_45 PF14947.6 gi|261402139|ref|YP_003246363.1| - 0.015 15.3 0.3 0.054 13.5 0.3 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.12 gi|261402139|ref|YP_003246363.1| - 0.016 15.0 0.3 0.063 13.1 0.0 2.1 3 0 0 3 3 2 0 HTH DNA binding domain HTH_29 PF13551.6 gi|261402139|ref|YP_003246363.1| - 0.017 15.2 0.0 0.039 14.0 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix PGK PF00162.19 gi|261402139|ref|YP_003246363.1| - 0.018 14.0 0.4 0.037 13.0 0.2 1.5 1 1 0 1 1 1 0 Phosphoglycerate kinase HTH_17 PF12728.7 gi|261402139|ref|YP_003246363.1| - 0.019 15.1 1.3 0.1 12.8 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain IF2_N PF04760.15 gi|261402139|ref|YP_003246363.1| - 0.023 14.5 0.2 0.082 12.7 0.2 2.0 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_36 PF13730.6 gi|261402139|ref|YP_003246363.1| - 0.028 14.4 0.0 0.099 12.6 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_6 PF01418.17 gi|261402139|ref|YP_003246363.1| - 0.029 14.3 0.0 0.1 12.6 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HI0933_like PF03486.14 gi|261402139|ref|YP_003246363.1| - 0.047 12.4 0.2 0.06 12.0 0.2 1.1 1 0 0 1 1 1 0 HI0933-like protein Pterin_bind PF00809.22 gi|261402139|ref|YP_003246363.1| - 0.096 12.3 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Pterin binding enzyme Cas_Cas6 PF01881.16 gi|261402140|ref|YP_003246364.1| - 1.3e-35 123.1 3.3 1.3e-35 123.1 3.3 1.8 2 0 0 2 2 2 1 CRISPR associated protein Cas6 CRISPR_Cas6 PF10040.9 gi|261402140|ref|YP_003246364.1| - 0.0061 17.2 0.0 0.018 15.7 0.0 1.8 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 AA_kinase PF00696.28 gi|261402141|ref|YP_003246365.1| - 1.8e-56 191.5 0.5 1.8e-56 191.5 0.5 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT PF01842.25 gi|261402141|ref|YP_003246365.1| - 5.1e-20 70.9 3.0 2.8e-10 39.8 0.1 2.9 3 0 0 3 3 3 2 ACT domain ACT_7 PF13840.6 gi|261402141|ref|YP_003246365.1| - 7.9e-18 64.0 5.0 2.4e-10 40.1 0.2 3.1 3 0 0 3 3 3 2 ACT domain HrcA PF01628.21 gi|261402141|ref|YP_003246365.1| - 0.019 14.9 1.8 0.13 12.2 0.6 2.3 2 0 0 2 2 2 0 HrcA protein C terminal domain Ribosomal_S21 PF01165.20 gi|261402141|ref|YP_003246365.1| - 0.064 13.0 0.6 0.16 11.7 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein S21 TP_methylase PF00590.20 gi|261402141|ref|YP_003246365.1| - 0.11 12.5 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Antimicrobial_8 PF08103.11 gi|261402141|ref|YP_003246365.1| - 0.26 11.5 6.9 0.087 13.0 1.7 2.8 2 0 0 2 2 2 0 Uperin family TPR_2 PF07719.17 gi|261402142|ref|YP_003246366.1| - 5.8e-14 51.0 6.2 9.3e-06 25.4 0.6 3.1 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|261402142|ref|YP_003246366.1| - 6.9e-14 51.0 5.3 1.6e-05 24.5 0.3 3.1 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261402142|ref|YP_003246366.1| - 3.3e-12 45.6 4.5 0.0009 19.3 0.2 3.2 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|261402142|ref|YP_003246366.1| - 4.6e-10 40.0 0.3 5.5e-10 39.7 0.3 1.2 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|261402142|ref|YP_003246366.1| - 4.3e-09 36.5 1.1 4.2e-07 30.2 0.5 2.8 1 1 1 2 2 2 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261402142|ref|YP_003246366.1| - 3e-08 33.2 2.0 7.8e-06 25.5 0.3 2.9 1 1 2 3 3 3 2 TPR repeat TPR_17 PF13431.6 gi|261402142|ref|YP_003246366.1| - 2.8e-07 30.4 2.5 5.4e-07 29.5 0.1 2.6 3 1 0 3 3 2 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|261402142|ref|YP_003246366.1| - 3e-06 27.6 1.5 9.5e-06 26.0 0.7 1.9 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|261402142|ref|YP_003246366.1| - 3.7e-06 27.3 0.5 0.037 14.8 0.0 2.8 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|261402142|ref|YP_003246366.1| - 4.6e-06 26.9 0.8 0.58 10.9 0.2 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|261402142|ref|YP_003246366.1| - 6.7e-06 25.8 1.7 0.0024 17.7 0.1 3.0 2 1 1 3 3 3 1 Tetratricopeptide repeat NARP1 PF12569.8 gi|261402142|ref|YP_003246366.1| - 0.0002 20.5 0.0 0.00021 20.3 0.0 1.2 1 0 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_7 PF13176.6 gi|261402142|ref|YP_003246366.1| - 0.00079 19.3 0.6 1.1 9.5 0.0 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|261402142|ref|YP_003246366.1| - 0.00089 19.7 0.3 0.0043 17.6 0.1 2.0 2 0 0 2 2 2 1 Tetratricopeptide repeat MIT PF04212.18 gi|261402142|ref|YP_003246366.1| - 0.0009 19.3 1.9 0.0053 16.8 1.9 2.3 1 1 0 1 1 1 1 MIT (microtubule interacting and transport) domain Sel1 PF08238.12 gi|261402142|ref|YP_003246366.1| - 0.0025 18.4 2.4 0.051 14.3 0.0 3.3 2 2 1 4 4 4 1 Sel1 repeat PPR PF01535.20 gi|261402142|ref|YP_003246366.1| - 0.0026 17.9 0.7 1.9 8.9 0.0 3.2 2 1 1 3 3 3 1 PPR repeat DUF3856 PF12968.7 gi|261402142|ref|YP_003246366.1| - 0.012 15.7 0.1 0.037 14.1 0.0 1.7 1 1 1 2 2 2 0 Domain of Unknown Function (DUF3856) Suppressor_APC PF11414.8 gi|261402142|ref|YP_003246366.1| - 0.058 13.5 0.1 0.17 12.0 0.1 1.8 2 0 0 2 2 2 0 Adenomatous polyposis coli tumour suppressor protein BPL_LplA_LipB PF03099.19 gi|261402143|ref|YP_003246367.1| - 1e-14 54.5 0.0 1.6e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|261402143|ref|YP_003246367.1| - 0.0076 16.1 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Xpo1 PF08389.12 gi|261402143|ref|YP_003246367.1| - 0.037 14.1 0.1 0.068 13.2 0.1 1.3 1 0 0 1 1 1 0 Exportin 1-like protein SPOR PF05036.13 gi|261402143|ref|YP_003246367.1| - 0.19 12.2 0.1 0.3 11.5 0.1 1.3 1 0 0 1 1 1 0 Sporulation related domain IGPS PF00218.21 gi|261402144|ref|YP_003246368.1| - 8.9e-75 251.1 5.5 1e-74 251.0 5.5 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|261402144|ref|YP_003246368.1| - 4.9e-05 23.2 0.8 8.4e-05 22.4 0.1 1.7 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Cellulase PF00150.18 gi|261402144|ref|YP_003246368.1| - 0.041 13.3 0.2 0.087 12.2 0.0 1.6 2 0 0 2 2 2 0 Cellulase (glycosyl hydrolase family 5) SepF PF04472.12 gi|261402145|ref|YP_003246369.1| - 9e-07 29.1 0.5 1.4e-06 28.4 0.5 1.3 1 0 0 1 1 1 1 Cell division protein SepF KNTase_C PF07827.11 gi|261402145|ref|YP_003246369.1| - 0.026 14.4 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 KNTase C-terminal domain PIF1 PF05970.14 gi|261402145|ref|YP_003246369.1| - 0.064 12.4 0.2 0.078 12.1 0.2 1.1 1 0 0 1 1 1 0 PIF1-like helicase KptA_kDCL PF18176.1 gi|261402145|ref|YP_003246369.1| - 0.089 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 KptA in kinetoplastid DICER domain MMR_HSR1 PF01926.23 gi|261402146|ref|YP_003246370.1| - 3.7e-21 75.3 0.1 5.8e-21 74.7 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261402146|ref|YP_003246370.1| - 4.6e-13 49.0 0.0 5.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|261402146|ref|YP_003246370.1| - 1e-08 34.9 0.1 2.4e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|261402146|ref|YP_003246370.1| - 1.1e-08 35.3 0.2 5.8e-05 23.2 0.1 2.3 2 0 0 2 2 2 2 Dynamin family RsgA_GTPase PF03193.16 gi|261402146|ref|YP_003246370.1| - 1e-07 32.1 1.1 0.0018 18.2 0.1 2.2 2 0 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|261402146|ref|YP_003246370.1| - 1.6e-05 24.6 0.0 3e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|261402146|ref|YP_003246370.1| - 2.5e-05 24.2 0.1 4.7e-05 23.4 0.1 1.4 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|261402146|ref|YP_003246370.1| - 2.9e-05 23.5 0.8 0.039 13.2 0.1 2.1 1 1 1 2 2 2 2 Septin Roc PF08477.13 gi|261402146|ref|YP_003246370.1| - 4.5e-05 23.7 0.1 0.019 15.2 0.1 2.3 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|261402146|ref|YP_003246370.1| - 6.3e-05 22.5 0.2 0.12 11.9 0.1 2.2 2 0 0 2 2 2 2 ADP-ribosylation factor family Ras PF00071.22 gi|261402146|ref|YP_003246370.1| - 0.00017 21.2 0.4 0.29 10.7 0.0 2.2 2 0 0 2 2 2 2 Ras family Gtr1_RagA PF04670.12 gi|261402146|ref|YP_003246370.1| - 0.00043 19.7 0.1 0.00063 19.2 0.1 1.2 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region PduV-EutP PF10662.9 gi|261402146|ref|YP_003246370.1| - 0.0063 16.3 0.1 0.23 11.2 0.1 2.1 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|261402146|ref|YP_003246370.1| - 0.01 16.1 0.2 0.023 14.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain NOG1 PF06858.14 gi|261402146|ref|YP_003246370.1| - 0.017 14.8 1.1 0.25 11.2 0.3 2.5 2 1 0 2 2 2 0 Nucleolar GTP-binding protein 1 (NOG1) DUF3388 PF11868.8 gi|261402146|ref|YP_003246370.1| - 0.051 12.9 0.2 0.085 12.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3388) AAA_15 PF13175.6 gi|261402146|ref|YP_003246370.1| - 0.051 13.3 1.4 0.083 12.6 1.4 1.7 1 1 0 1 1 1 0 AAA ATPase domain G-alpha PF00503.20 gi|261402146|ref|YP_003246370.1| - 0.069 12.3 0.3 2.7 7.1 0.1 2.2 2 0 0 2 2 2 0 G-protein alpha subunit ATP_bind_1 PF03029.17 gi|261402146|ref|YP_003246370.1| - 0.12 12.1 0.2 0.44 10.3 0.0 2.0 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|261402146|ref|YP_003246370.1| - 0.12 12.0 0.2 0.61 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AIG1 PF04548.16 gi|261402146|ref|YP_003246370.1| - 0.13 11.6 0.8 0.5 9.7 0.8 2.0 1 1 0 1 1 1 0 AIG1 family DUF1743 PF08489.11 gi|261402147|ref|YP_003246371.1| - 3.5e-11 43.2 1.6 1.3e-08 34.9 0.1 3.6 3 1 0 3 3 3 1 Domain of unknown function (DUF1743) Lyase_1 PF00206.20 gi|261402148|ref|YP_003246372.1| - 7.9e-61 206.1 0.0 1.3e-60 205.4 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|261402148|ref|YP_003246372.1| - 1.5e-20 73.7 0.0 7.2e-20 71.5 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal ZnuA PF01297.17 gi|261402148|ref|YP_003246372.1| - 0.0054 16.2 0.0 2.2 7.6 0.0 2.4 1 1 0 2 2 2 2 Zinc-uptake complex component A periplasmic DUF1048 PF06304.11 gi|261402148|ref|YP_003246372.1| - 0.054 14.0 7.1 0.075 13.5 0.0 4.4 5 1 1 6 6 6 0 Protein of unknown function (DUF1048) DUF1002 PF06207.11 gi|261402148|ref|YP_003246372.1| - 0.29 10.6 4.2 0.17 11.4 0.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1002) Inhibitor_G39P PF11417.8 gi|261402148|ref|YP_003246372.1| - 0.38 11.3 2.8 2.1 9.0 0.2 3.0 3 0 0 3 3 3 0 Loader and inhibitor of phage G40P DUF2150 PF09920.9 gi|261402148|ref|YP_003246372.1| - 0.52 10.3 5.9 0.071 13.1 0.8 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) XhlA PF10779.9 gi|261402148|ref|YP_003246372.1| - 2.6 8.3 7.0 3.6 7.9 2.9 3.0 2 0 0 2 2 2 0 Haemolysin XhlA MCM_N PF14551.6 gi|261402148|ref|YP_003246372.1| - 7.3 7.2 6.1 3.7 8.2 0.2 3.1 3 1 0 3 3 3 0 MCM N-terminal domain PQQ_3 PF13570.6 gi|261402149|ref|YP_003246373.1| - 2.6e-07 30.9 0.6 0.027 14.9 0.0 4.6 4 0 0 4 4 4 2 PQQ-like domain PQQ PF01011.21 gi|261402149|ref|YP_003246373.1| - 1.8e-06 27.6 1.6 0.061 13.3 0.0 4.5 5 0 0 5 5 5 2 PQQ enzyme repeat PQQ_2 PF13360.6 gi|261402149|ref|YP_003246373.1| - 2.3e-06 27.3 0.0 0.0085 15.7 0.0 2.2 1 1 0 2 2 2 2 PQQ-like domain WD40 PF00400.32 gi|261402149|ref|YP_003246373.1| - 9.1e-06 26.3 1.4 0.23 12.4 0.0 5.1 5 0 0 5 5 5 1 WD domain, G-beta repeat PD40 PF07676.12 gi|261402149|ref|YP_003246373.1| - 0.0024 17.8 1.5 0.16 11.9 0.1 3.1 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat VID27 PF08553.10 gi|261402149|ref|YP_003246373.1| - 0.0047 16.0 0.2 4.8 6.1 0.0 3.3 2 1 0 3 3 3 2 VID27 C-terminal WD40-like domain YdjM PF04307.14 gi|261402150|ref|YP_003246374.1| - 1.4e-20 73.3 0.6 7.5e-20 70.9 0.6 2.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2283 PF10049.9 gi|261402151|ref|YP_003246375.1| - 3.2e-07 30.5 2.5 6.1e-07 29.6 2.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) Fibrillarin_2 PF10113.9 gi|261402152|ref|YP_003246376.1| - 6.3e-244 810.2 2.0 7.4e-244 809.9 2.0 1.0 1 0 0 1 1 1 1 Fibrillarin-like archaeal protein NTP_transf_2 PF01909.23 gi|261402153|ref|YP_003246377.1| - 3.5e-13 49.7 0.0 4e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|261402153|ref|YP_003246377.1| - 1.2e-07 31.7 0.1 1.3e-07 31.6 0.1 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|261402153|ref|YP_003246377.1| - 0.02 14.7 0.0 0.022 14.6 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 T3RM_EcoP15I_C PF18273.1 gi|261402153|ref|YP_003246377.1| - 0.071 13.4 0.0 0.071 13.4 0.0 1.1 1 0 0 1 1 1 0 Type III R-M EcoP15I C-terminal domain BolA PF01722.18 gi|261402153|ref|YP_003246377.1| - 0.19 12.0 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 BolA-like protein Cauli_AT PF03233.13 gi|261402154|ref|YP_003246378.1| - 0.0052 16.7 4.2 0.0089 16.0 4.2 1.4 1 0 0 1 1 1 1 Aphid transmission protein DUF16 PF01519.16 gi|261402154|ref|YP_003246378.1| - 0.026 15.0 2.5 0.053 14.0 2.5 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 Radical_SAM PF04055.21 gi|261402156|ref|YP_003246380.1| - 1.7e-13 51.3 0.6 1.7e-13 51.3 0.6 2.4 3 0 0 3 3 3 1 Radical SAM superfamily BATS PF06968.13 gi|261402156|ref|YP_003246380.1| - 1.5e-10 41.0 0.0 7.7e-10 38.8 0.0 2.1 2 1 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain IMPDH PF00478.25 gi|261402156|ref|YP_003246380.1| - 0.024 13.6 0.1 0.044 12.8 0.1 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain HMD PF03201.16 gi|261402157|ref|YP_003246381.1| - 5.2e-41 138.8 0.4 9.5e-41 137.9 0.4 1.4 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|261402157|ref|YP_003246381.1| - 0.0035 17.5 0.0 0.0078 16.4 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase FliH PF02108.16 gi|261402157|ref|YP_003246381.1| - 0.025 14.7 0.1 0.064 13.3 0.1 1.7 1 0 0 1 1 1 0 Flagellar assembly protein FliH IlvC PF01450.19 gi|261402157|ref|YP_003246381.1| - 0.12 12.7 0.8 0.95 9.7 0.0 2.4 3 0 0 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain Cyclase PF04199.13 gi|261402158|ref|YP_003246382.1| - 2.7e-10 40.6 0.0 8.8e-09 35.7 0.0 2.1 1 1 0 1 1 1 1 Putative cyclase Gar1 PF04410.14 gi|261402159|ref|YP_003246383.1| - 2.8e-05 23.9 1.8 3.8e-05 23.5 1.8 1.4 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.19 gi|261402160|ref|YP_003246384.1| - 1.1e-41 140.7 0.9 3.6e-20 71.8 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Intein_splicing PF14890.6 gi|261402160|ref|YP_003246384.1| - 7.9e-25 87.4 0.0 2.6e-24 85.7 0.0 1.9 1 1 0 1 1 1 1 Intein splicing domain TF_Zn_Ribbon PF08271.12 gi|261402160|ref|YP_003246384.1| - 4.5e-16 58.1 2.3 1.4e-15 56.5 2.3 1.9 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|261402160|ref|YP_003246384.1| - 0.0015 18.8 2.5 0.0062 16.9 1.5 2.3 2 0 0 2 2 2 1 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|261402160|ref|YP_003246384.1| - 0.0062 16.0 0.8 0.062 12.8 0.2 2.7 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|261402160|ref|YP_003246384.1| - 0.0087 15.9 1.4 0.023 14.5 0.2 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain mTERF PF02536.14 gi|261402160|ref|YP_003246384.1| - 0.0099 14.8 2.8 0.011 14.7 1.3 1.7 1 1 0 1 1 1 1 mTERF zf-ribbon_3 PF13248.6 gi|261402160|ref|YP_003246384.1| - 0.036 13.5 2.6 0.43 10.1 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RB_B PF01857.20 gi|261402160|ref|YP_003246384.1| - 0.046 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HTH_3 PF01381.22 gi|261402160|ref|YP_003246384.1| - 0.1 12.7 0.0 4 7.6 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix TMIE PF16038.5 gi|261402160|ref|YP_003246384.1| - 0.13 12.1 0.2 0.13 12.1 0.2 2.2 2 0 0 2 2 1 0 TMIE protein UPF0253 PF06786.12 gi|261402160|ref|YP_003246384.1| - 0.13 12.5 0.1 1.7 9.0 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) RPA_interact_C PF14768.6 gi|261402160|ref|YP_003246384.1| - 0.17 12.5 0.5 0.89 10.2 0.2 2.1 2 0 0 2 2 2 0 Replication protein A interacting C-terminal HTH_Tnp_ISL3 PF13542.6 gi|261402160|ref|YP_003246384.1| - 0.23 10.9 1.1 0.52 9.8 0.2 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DZR PF12773.7 gi|261402160|ref|YP_003246384.1| - 0.37 10.8 3.5 0.2 11.7 1.1 1.7 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|261402160|ref|YP_003246384.1| - 0.68 10.1 3.6 1.1 9.5 0.1 2.7 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_S27e PF01667.17 gi|261402160|ref|YP_003246384.1| - 0.89 9.3 3.2 2.3 8.0 3.2 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 DUF2318 PF10080.9 gi|261402160|ref|YP_003246384.1| - 3 8.0 6.0 3.8 7.7 1.3 2.7 3 0 0 3 3 2 0 Predicted membrane protein (DUF2318) T2SSE PF00437.20 gi|261402161|ref|YP_003246385.1| - 5.7e-54 183.0 0.0 9.5e-51 172.4 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein Intein_splicing PF14890.6 gi|261402161|ref|YP_003246385.1| - 6.7e-19 68.2 4.1 2e-18 66.6 4.0 1.9 1 1 0 1 1 1 1 Intein splicing domain ABC_tran PF00005.27 gi|261402161|ref|YP_003246385.1| - 0.00014 22.4 0.0 0.00044 20.8 0.0 1.8 1 0 0 1 1 1 1 ABC transporter Hint PF01079.20 gi|261402161|ref|YP_003246385.1| - 0.00016 21.2 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Hint module FtsK_SpoIIIE PF01580.18 gi|261402161|ref|YP_003246385.1| - 0.00058 19.3 2.1 0.00079 18.9 0.0 2.1 3 0 0 3 3 3 1 FtsK/SpoIIIE family PT-HINT PF07591.11 gi|261402161|ref|YP_003246385.1| - 0.00074 19.8 0.6 0.0016 18.7 0.6 1.5 1 0 0 1 1 1 1 Pretoxin HINT domain AAA_29 PF13555.6 gi|261402161|ref|YP_003246385.1| - 0.0017 18.1 0.1 0.0059 16.3 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|261402161|ref|YP_003246385.1| - 0.0027 18.3 0.1 0.0027 18.3 0.1 3.0 4 0 0 4 4 4 1 AAA domain Zeta_toxin PF06414.12 gi|261402161|ref|YP_003246385.1| - 0.027 13.7 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_21 PF13304.6 gi|261402161|ref|YP_003246385.1| - 0.039 13.8 1.7 0.058 13.2 0.0 2.1 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|261402161|ref|YP_003246385.1| - 0.18 12.0 0.0 0.44 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain T2SSF PF00482.23 gi|261402162|ref|YP_003246386.1| - 6e-16 58.5 1.0 6e-16 58.5 1.0 2.8 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F T2SSF PF00482.23 gi|261402163|ref|YP_003246387.1| - 2.8e-15 56.4 1.1 2.8e-15 56.4 1.1 2.8 3 1 0 3 3 3 1 Type II secretion system (T2SS), protein F RNA12 PF10443.9 gi|261402163|ref|YP_003246387.1| - 0.0068 15.2 0.4 0.012 14.3 0.4 1.3 1 0 0 1 1 1 1 RNA12 protein Phasin PF05597.11 gi|261402163|ref|YP_003246387.1| - 0.11 12.6 0.2 0.17 11.9 0.2 1.2 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) FTCD_C PF04961.12 gi|261402163|ref|YP_003246387.1| - 1.6 8.5 4.9 0.42 10.4 0.2 2.1 2 1 1 3 3 3 0 Formiminotransferase-cyclodeaminase HD PF01966.22 gi|261402164|ref|YP_003246388.1| - 3.9e-17 62.6 0.6 5.2e-17 62.2 0.6 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|261402164|ref|YP_003246388.1| - 0.001 18.6 0.0 0.032 13.7 0.0 2.1 1 1 1 2 2 2 2 HDOD domain TFIIE_alpha PF02002.17 gi|261402165|ref|YP_003246389.1| - 1e-39 134.6 5.9 1e-39 134.6 5.9 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|261402165|ref|YP_003246389.1| - 2.6e-06 26.8 1.1 5.4e-06 25.8 1.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_9 PF08221.11 gi|261402165|ref|YP_003246389.1| - 8.1e-05 22.6 0.0 0.00016 21.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r3 PF04539.16 gi|261402165|ref|YP_003246389.1| - 0.00022 21.3 0.6 0.00045 20.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70 region 3 HypA PF01155.19 gi|261402165|ref|YP_003246389.1| - 0.00073 19.5 0.0 0.00095 19.2 0.0 1.5 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_24 PF13412.6 gi|261402165|ref|YP_003246389.1| - 0.0021 17.6 0.2 0.0061 16.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|261402165|ref|YP_003246389.1| - 0.0068 16.3 1.6 0.014 15.3 0.9 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|261402165|ref|YP_003246389.1| - 0.008 16.5 0.0 0.015 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Rad50_zn_hook PF04423.14 gi|261402165|ref|YP_003246389.1| - 0.019 14.8 0.2 0.019 14.8 0.2 3.0 3 1 0 3 3 3 0 Rad50 zinc hook motif HTH_IclR PF09339.10 gi|261402165|ref|YP_003246389.1| - 0.023 14.5 0.0 0.039 13.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|261402165|ref|YP_003246389.1| - 0.025 14.4 0.6 0.078 12.9 0.0 2.1 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|261402165|ref|YP_003246389.1| - 0.032 14.3 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2095 PF09868.9 gi|261402165|ref|YP_003246389.1| - 0.055 13.4 1.0 0.096 12.7 0.2 1.8 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2095) zf-met PF12874.7 gi|261402165|ref|YP_003246389.1| - 0.091 13.2 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger of C2H2 type Sigma70_r4_2 PF08281.12 gi|261402165|ref|YP_003246389.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 zf-Di19 PF05605.12 gi|261402165|ref|YP_003246389.1| - 0.13 12.5 0.1 8 6.8 0.0 2.3 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-TFIIB PF13453.6 gi|261402165|ref|YP_003246389.1| - 0.14 11.5 1.8 0.76 9.2 1.8 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger HTH_40 PF14493.6 gi|261402165|ref|YP_003246389.1| - 0.16 12.4 1.9 0.36 11.3 0.2 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain zf-RRN7 PF11781.8 gi|261402165|ref|YP_003246389.1| - 0.2 11.3 1.6 11 5.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_4 PF13717.6 gi|261402165|ref|YP_003246389.1| - 0.26 11.3 2.7 0.33 10.9 0.5 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Prefoldin_2 PF01920.20 gi|261402165|ref|YP_003246389.1| - 0.33 10.9 0.1 0.33 10.9 0.1 2.8 3 0 0 3 3 3 0 Prefoldin subunit Ribosomal_L12_N PF16320.5 gi|261402165|ref|YP_003246389.1| - 8.4 6.2 6.4 20 5.0 1.5 2.4 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain ATP-grasp_3 PF02655.14 gi|261402166|ref|YP_003246390.1| - 3.8e-35 121.3 0.7 7.7e-35 120.3 0.7 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|261402166|ref|YP_003246390.1| - 6.6e-06 25.6 2.1 8.3e-06 25.2 0.6 1.9 2 1 1 3 3 3 1 YheC/D like ATP-grasp ATPgrasp_Ter PF15632.6 gi|261402166|ref|YP_003246390.1| - 0.0011 18.8 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon RimK PF08443.11 gi|261402166|ref|YP_003246390.1| - 0.0053 16.4 0.9 0.032 13.8 0.9 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_ST PF14397.6 gi|261402166|ref|YP_003246390.1| - 0.055 12.7 1.1 0.11 11.7 0.6 1.8 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|261402166|ref|YP_003246390.1| - 0.15 11.6 0.1 2.5 7.6 0.0 2.3 1 1 1 2 2 2 0 ATP-grasp domain Drc1-Sld2 PF11719.8 gi|261402166|ref|YP_003246390.1| - 0.18 11.3 2.5 0.27 10.8 2.5 1.1 1 0 0 1 1 1 0 DNA replication and checkpoint protein GCHY-1 PF02649.14 gi|261402167|ref|YP_003246391.1| - 3.4e-78 262.7 4.2 4.1e-78 262.5 4.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 FRP PF18032.1 gi|261402167|ref|YP_003246391.1| - 0.009 16.6 0.3 0.25 12.0 0.0 2.6 2 0 0 2 2 2 1 Photoprotection regulator fluorescence recovery protein CPSase_L_D3 PF02787.19 gi|261402167|ref|YP_003246391.1| - 0.089 13.1 0.1 0.22 11.9 0.1 1.8 1 1 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HTH_5 PF01022.20 gi|261402168|ref|YP_003246392.1| - 1.8e-13 50.1 0.0 5.8e-13 48.5 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family ATPase_2 PF01637.18 gi|261402168|ref|YP_003246392.1| - 6.7e-09 36.0 0.1 3.5e-08 33.7 0.1 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|261402168|ref|YP_003246392.1| - 1.1e-08 35.7 0.0 2.8e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|261402168|ref|YP_003246392.1| - 2.9e-06 27.6 0.0 7.5e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|261402168|ref|YP_003246392.1| - 9.6e-06 26.1 0.1 5.5e-05 23.6 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF2791 PF10923.8 gi|261402168|ref|YP_003246392.1| - 1.6e-05 24.0 0.0 0.00061 18.8 0.1 2.2 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) Penicillinase_R PF03965.16 gi|261402168|ref|YP_003246392.1| - 0.00014 22.2 0.0 0.00039 20.7 0.0 1.8 1 0 0 1 1 1 1 Penicillinase repressor NB-ARC PF00931.22 gi|261402168|ref|YP_003246392.1| - 0.00027 20.2 0.1 0.072 12.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain MarR_2 PF12802.7 gi|261402168|ref|YP_003246392.1| - 0.00042 20.1 0.0 0.00089 19.1 0.0 1.5 1 0 0 1 1 1 1 MarR family ABC_tran PF00005.27 gi|261402168|ref|YP_003246392.1| - 0.00065 20.2 0.3 0.003 18.1 0.2 2.2 2 1 0 2 2 2 1 ABC transporter MarR PF01047.22 gi|261402168|ref|YP_003246392.1| - 0.0013 18.7 0.0 0.0029 17.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|261402168|ref|YP_003246392.1| - 0.0021 18.5 0.0 0.0054 17.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|261402168|ref|YP_003246392.1| - 0.0072 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|261402168|ref|YP_003246392.1| - 0.01 16.1 0.2 0.83 10.0 0.0 2.5 2 0 0 2 2 2 0 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|261402168|ref|YP_003246392.1| - 0.01 15.5 0.0 0.046 13.4 0.0 2.1 1 1 0 1 1 1 0 Sigma-70, region 4 PaaX PF07848.12 gi|261402168|ref|YP_003246392.1| - 0.014 15.6 0.0 0.035 14.3 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein DUF815 PF05673.13 gi|261402168|ref|YP_003246392.1| - 0.015 14.5 0.6 0.037 13.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) HTH_38 PF13936.6 gi|261402168|ref|YP_003246392.1| - 0.017 14.9 0.1 0.076 12.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|261402168|ref|YP_003246392.1| - 0.074 12.6 0.0 1.2 8.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 TrmB PF01978.19 gi|261402168|ref|YP_003246392.1| - 0.075 12.9 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA_5 PF07728.14 gi|261402168|ref|YP_003246392.1| - 0.087 12.8 0.1 0.66 10.0 0.1 2.5 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) AAA_35 PF14516.6 gi|261402168|ref|YP_003246392.1| - 0.087 11.6 0.0 0.17 10.7 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain RsgA_GTPase PF03193.16 gi|261402168|ref|YP_003246392.1| - 0.11 12.4 0.1 0.35 10.8 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase HTH_11 PF08279.12 gi|261402168|ref|YP_003246392.1| - 0.13 12.2 0.0 0.45 10.5 0.0 1.9 1 0 0 1 1 1 0 HTH domain Methyltransf_18 PF12847.7 gi|261402168|ref|YP_003246392.1| - 0.14 12.1 1.0 0.63 10.0 0.1 2.1 2 0 0 2 2 2 0 Methyltransferase domain HTH_20 PF12840.7 gi|261402168|ref|YP_003246392.1| - 0.17 12.0 0.0 0.72 10.0 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain Ezh2_MCSS PF18600.1 gi|261402169|ref|YP_003246393.1| - 0.021 14.4 0.1 0.042 13.5 0.1 1.4 1 0 0 1 1 1 0 MCSS domain ER PF01133.17 gi|261402170|ref|YP_003246394.1| - 0.0058 16.6 1.1 0.0058 16.6 1.1 2.2 2 0 0 2 2 2 1 Enhancer of rudimentary TrmB PF01978.19 gi|261402170|ref|YP_003246394.1| - 0.039 13.9 0.5 0.11 12.4 0.5 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TP_methylase PF00590.20 gi|261402171|ref|YP_003246395.1| - 7.7e-45 153.4 0.0 8.6e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M48 PF01435.18 gi|261402172|ref|YP_003246396.1| - 1.6e-24 86.8 0.0 3.7e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|261402172|ref|YP_003246396.1| - 3.2e-07 29.8 2.8 3.2e-07 29.8 2.8 2.8 4 0 0 4 4 4 1 BlaR1 peptidase M56 NnrU PF07298.11 gi|261402172|ref|YP_003246396.1| - 0.0031 17.0 1.6 0.0049 16.4 0.2 2.0 1 1 1 2 2 2 1 NnrU protein SprT-like PF10263.9 gi|261402172|ref|YP_003246396.1| - 0.023 14.5 0.2 0.054 13.4 0.2 1.6 1 0 0 1 1 1 0 SprT-like family Trigger_N PF05697.13 gi|261402172|ref|YP_003246396.1| - 0.09 13.1 2.2 0.14 12.5 0.3 2.1 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) Radical_SAM PF04055.21 gi|261402173|ref|YP_003246397.1| - 7.7e-19 68.7 0.1 1.7e-18 67.6 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.20 gi|261402173|ref|YP_003246397.1| - 1.7e-12 47.1 0.2 4.2e-12 45.9 0.2 1.7 1 0 0 1 1 1 1 TRAM domain B12-binding PF02310.19 gi|261402173|ref|YP_003246397.1| - 1e-08 35.2 0.0 2.6e-08 33.9 0.0 1.7 1 1 0 1 1 1 1 B12 binding domain KH_1 PF00013.29 gi|261402173|ref|YP_003246397.1| - 0.003 17.3 0.9 0.02 14.7 0.1 2.7 3 0 0 3 3 3 1 KH domain OrfB_Zn_ribbon PF07282.11 gi|261402175|ref|YP_003246399.1| - 9.5e-25 86.3 1.4 1.8e-24 85.5 0.9 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|261402175|ref|YP_003246399.1| - 2e-19 70.0 0.2 4.6e-19 68.8 0.2 1.6 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|261402175|ref|YP_003246399.1| - 0.0072 16.6 0.6 0.015 15.6 0.6 1.5 1 0 0 1 1 1 1 C1 domain TF_Zn_Ribbon PF08271.12 gi|261402175|ref|YP_003246399.1| - 0.016 14.7 0.6 0.038 13.5 0.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|261402175|ref|YP_003246399.1| - 0.16 11.4 1.8 0.83 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|261402175|ref|YP_003246399.1| - 0.52 10.0 1.6 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DrsE PF02635.15 gi|261402176|ref|YP_003246400.1| - 3.3e-20 72.6 0.0 6.6e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|261402176|ref|YP_003246400.1| - 7.3e-17 61.0 0.5 4.2e-14 52.1 0.0 2.3 2 0 0 2 2 2 2 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|261402176|ref|YP_003246400.1| - 6e-11 42.5 0.3 9.4e-07 28.8 0.0 2.7 1 1 2 3 3 3 2 DsrE/DsrF/DrsH-like family UPF0180 PF03698.13 gi|261402176|ref|YP_003246400.1| - 0.091 12.9 0.4 0.091 12.9 0.4 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) DUF5400 PF17379.2 gi|261402177|ref|YP_003246401.1| - 5e-44 148.9 13.7 5.8e-44 148.7 13.7 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5400) Dicty_CAR PF05462.11 gi|261402177|ref|YP_003246401.1| - 0.19 10.8 5.8 0.061 12.5 2.3 1.7 1 1 1 2 2 2 0 Slime mold cyclic AMP receptor IgaA PF07095.11 gi|261402177|ref|YP_003246401.1| - 0.29 9.1 1.9 0.32 8.9 1.9 1.0 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA PAPS_reduct PF01507.19 gi|261402178|ref|YP_003246402.1| - 2.8e-50 170.7 0.1 5.3e-50 169.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family PUA PF01472.20 gi|261402178|ref|YP_003246402.1| - 2.5e-13 49.8 3.0 4.9e-13 48.8 3.0 1.5 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|261402178|ref|YP_003246402.1| - 0.00018 21.7 0.3 0.00057 20.1 0.3 1.8 1 0 0 1 1 1 1 UPF0113 PUA domain ATP_bind_3 PF01171.20 gi|261402178|ref|YP_003246402.1| - 0.0021 17.8 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|261402178|ref|YP_003246402.1| - 0.0025 17.3 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|261402178|ref|YP_003246402.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 NAD synthase Transketolase_C PF02780.20 gi|261402178|ref|YP_003246402.1| - 0.092 12.6 0.0 5.1 7.0 0.0 2.4 2 0 0 2 2 2 0 Transketolase, C-terminal domain FUN14 PF04930.15 gi|261402179|ref|YP_003246403.1| - 1.3e-11 44.8 11.7 2.3e-11 44.0 11.7 1.3 1 1 0 1 1 1 1 FUN14 family SPC12 PF06645.13 gi|261402179|ref|YP_003246403.1| - 6.8 6.9 6.7 8.1 6.6 3.5 2.4 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF555 PF04475.12 gi|261402180|ref|YP_003246404.1| - 1e-42 144.6 0.5 1.2e-42 144.4 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) DUF348 PF03990.14 gi|261402180|ref|YP_003246404.1| - 0.024 14.4 0.4 0.084 12.6 0.0 2.0 2 1 0 2 2 2 0 G5-linked-Ubiquitin-like domain AA_kinase PF00696.28 gi|261402181|ref|YP_003246405.1| - 3.8e-47 160.9 4.6 4.3e-47 160.7 4.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family SIS_2 PF13580.6 gi|261402182|ref|YP_003246406.1| - 3.9e-38 130.6 0.1 4.8e-38 130.3 0.1 1.1 1 0 0 1 1 1 1 SIS domain SIS PF01380.22 gi|261402182|ref|YP_003246406.1| - 3e-06 27.1 0.1 6.1e-05 22.9 0.0 2.3 1 1 2 3 3 3 1 SIS domain Ribosomal_S2 PF00318.20 gi|261402182|ref|YP_003246406.1| - 0.004 16.4 0.2 0.013 14.7 0.2 1.9 1 1 0 1 1 1 1 Ribosomal protein S2 MSC PF09402.10 gi|261402182|ref|YP_003246406.1| - 0.059 12.8 0.0 0.067 12.6 0.0 1.1 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain CTP_transf_like PF01467.26 gi|261402183|ref|YP_003246407.1| - 3.1e-17 63.1 0.0 5.4e-17 62.3 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|261402183|ref|YP_003246407.1| - 0.015 15.2 0.1 0.021 14.7 0.1 1.4 1 1 0 1 1 1 0 FAD synthetase Pantoate_ligase PF02569.15 gi|261402183|ref|YP_003246407.1| - 0.028 13.6 0.0 0.041 13.1 0.0 1.2 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase PfkB PF00294.24 gi|261402184|ref|YP_003246408.1| - 2.3e-38 132.2 0.0 2.9e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|261402184|ref|YP_003246408.1| - 1e-09 38.2 0.0 1.6e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase RE_MjaI PF09568.10 gi|261402184|ref|YP_003246408.1| - 0.058 13.2 0.2 0.16 11.8 0.0 1.7 1 1 1 2 2 2 0 MjaI restriction endonuclease Ribosomal_L7Ae PF01248.26 gi|261402184|ref|YP_003246408.1| - 0.11 12.2 0.2 0.59 9.9 0.1 2.3 1 1 1 2 2 2 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family HAD_2 PF13419.6 gi|261402186|ref|YP_003246410.1| - 3.6e-13 50.0 0.0 7.6e-12 45.7 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|261402186|ref|YP_003246410.1| - 3.3e-11 43.1 0.0 5.8e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like PNK3P PF08645.11 gi|261402186|ref|YP_003246410.1| - 6.7e-09 35.6 0.0 8.2e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase Hydrolase PF00702.26 gi|261402186|ref|YP_003246410.1| - 3.7e-05 24.1 0.0 7.8e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|261402186|ref|YP_003246410.1| - 0.0028 18.1 0.0 0.0045 17.4 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|261402186|ref|YP_003246410.1| - 0.007 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase eIF-6 PF01912.18 gi|261402186|ref|YP_003246410.1| - 0.17 11.2 0.1 0.35 10.2 0.0 1.5 2 0 0 2 2 2 0 eIF-6 family Polysacc_synt PF01943.17 gi|261402187|ref|YP_003246411.1| - 1.1e-47 162.7 28.6 1.1e-47 162.7 28.6 2.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|261402187|ref|YP_003246411.1| - 7.4e-24 84.4 26.2 7.4e-24 84.4 26.2 4.2 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|261402187|ref|YP_003246411.1| - 3.2e-13 49.6 17.0 3.2e-13 49.6 17.0 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|261402187|ref|YP_003246411.1| - 3.7e-11 42.9 27.6 4.7e-08 32.8 10.6 3.8 3 1 0 3 3 3 2 MatE MurJ PF03023.14 gi|261402187|ref|YP_003246411.1| - 1.5e-05 23.8 40.8 2.4e-05 23.1 40.8 1.3 1 0 0 1 1 1 1 Lipid II flippase MurJ UDPG_MGDP_dh_N PF03721.14 gi|261402188|ref|YP_003246412.1| - 8.4e-63 211.3 0.2 1.5e-62 210.5 0.2 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|261402188|ref|YP_003246412.1| - 1.2e-32 112.0 1.4 3.2e-26 91.4 0.0 3.4 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|261402188|ref|YP_003246412.1| - 1.1e-28 99.7 0.6 7.7e-28 97.0 0.1 2.7 2 1 1 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LAGLIDADG_3 PF14528.6 gi|261402188|ref|YP_003246412.1| - 1.2e-20 73.6 6.9 8.1e-11 42.1 0.2 4.0 3 1 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|261402188|ref|YP_003246412.1| - 6.8e-15 55.2 0.0 6.7e-14 52.0 0.0 2.7 2 1 0 2 2 2 1 Intein splicing domain NAD_binding_2 PF03446.15 gi|261402188|ref|YP_003246412.1| - 4e-05 23.8 0.0 0.0016 18.6 0.0 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|261402188|ref|YP_003246412.1| - 0.00086 19.0 0.3 0.0028 17.3 0.0 2.0 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA Hom_end PF05204.14 gi|261402188|ref|YP_003246412.1| - 0.002 18.3 0.0 0.0046 17.1 0.0 1.6 1 0 0 1 1 1 1 Homing endonuclease LAGLIDADG_WhiA PF14527.6 gi|261402188|ref|YP_003246412.1| - 0.002 18.1 0.1 0.18 11.9 0.0 3.1 2 0 0 2 2 2 1 WhiA LAGLIDADG-like domain F420_oxidored PF03807.17 gi|261402188|ref|YP_003246412.1| - 0.0075 16.8 0.9 0.73 10.5 0.0 4.3 4 1 1 5 5 5 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|261402188|ref|YP_003246412.1| - 0.011 15.6 0.0 0.029 14.3 0.0 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|261402188|ref|YP_003246412.1| - 0.023 14.7 0.1 4.2 7.3 0.0 3.7 2 1 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.6 gi|261402188|ref|YP_003246412.1| - 0.046 14.2 0.2 0.69 10.4 0.0 2.9 2 1 1 3 3 3 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|261402188|ref|YP_003246412.1| - 0.14 11.5 0.0 0.41 10.0 0.0 1.9 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-sulfurylase PF01747.17 gi|261402189|ref|YP_003246413.1| - 3.4e-87 291.4 0.1 4.6e-87 290.9 0.1 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|261402189|ref|YP_003246413.1| - 2.7e-49 166.9 0.0 4.7e-49 166.1 0.0 1.4 1 0 0 1 1 1 1 PUA-like domain DHHA1 PF02272.19 gi|261402190|ref|YP_003246414.1| - 1.4e-05 25.5 3.6 1.7e-05 25.3 2.3 1.8 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|261402190|ref|YP_003246414.1| - 0.001 19.3 0.0 0.0017 18.5 0.0 1.5 1 0 0 1 1 1 1 DHH family DUF2179 PF10035.9 gi|261402190|ref|YP_003246414.1| - 0.07 12.9 2.6 0.1 12.3 0.2 2.5 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2179) APS_kinase PF01583.20 gi|261402191|ref|YP_003246415.1| - 1.3e-58 197.4 0.0 1.5e-58 197.2 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_18 PF13238.6 gi|261402191|ref|YP_003246415.1| - 9.2e-09 35.9 0.0 1.5e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|261402191|ref|YP_003246415.1| - 1e-07 31.7 0.0 1.3e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|261402191|ref|YP_003246415.1| - 8e-06 26.1 0.0 1e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|261402191|ref|YP_003246415.1| - 2.5e-05 23.6 0.0 4.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|261402191|ref|YP_003246415.1| - 0.00018 22.0 0.0 0.00027 21.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|261402191|ref|YP_003246415.1| - 0.0002 21.6 0.0 0.00029 21.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|261402191|ref|YP_003246415.1| - 0.00031 21.3 0.0 0.0005 20.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|261402191|ref|YP_003246415.1| - 0.00033 20.9 0.0 0.00046 20.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|261402191|ref|YP_003246415.1| - 0.00034 20.6 0.0 0.00054 19.9 0.0 1.5 1 0 0 1 1 1 1 NTPase Cytidylate_kin PF02224.18 gi|261402191|ref|YP_003246415.1| - 0.00037 20.3 1.2 0.13 11.9 0.0 3.2 2 1 2 4 4 4 1 Cytidylate kinase PRK PF00485.18 gi|261402191|ref|YP_003246415.1| - 0.0005 19.9 0.0 0.00095 19.0 0.0 1.5 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|261402191|ref|YP_003246415.1| - 0.00054 20.4 0.0 0.00073 20.0 0.0 1.2 1 1 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|261402191|ref|YP_003246415.1| - 0.00072 19.3 0.0 0.001 18.8 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase AAA_24 PF13479.6 gi|261402191|ref|YP_003246415.1| - 0.0011 18.7 0.0 0.0024 17.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|261402191|ref|YP_003246415.1| - 0.0016 18.1 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain CLP1_P PF16575.5 gi|261402191|ref|YP_003246415.1| - 0.0021 17.9 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|261402191|ref|YP_003246415.1| - 0.0034 17.1 0.0 0.0055 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|261402191|ref|YP_003246415.1| - 0.0035 17.7 0.0 0.0086 16.5 0.0 1.6 1 1 0 1 1 1 1 RNA helicase NACHT PF05729.12 gi|261402191|ref|YP_003246415.1| - 0.0037 17.2 0.1 0.007 16.3 0.1 1.5 1 1 0 1 1 1 1 NACHT domain CbiA PF01656.23 gi|261402191|ref|YP_003246415.1| - 0.0052 16.8 0.0 0.0073 16.4 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|261402191|ref|YP_003246415.1| - 0.0055 17.1 0.0 0.0093 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|261402191|ref|YP_003246415.1| - 0.0065 16.2 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein PduV-EutP PF10662.9 gi|261402191|ref|YP_003246415.1| - 0.011 15.4 0.0 0.028 14.2 0.0 1.6 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation CPT PF07931.12 gi|261402191|ref|YP_003246415.1| - 0.013 15.4 0.1 0.051 13.4 0.1 2.2 1 1 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein MobB PF03205.14 gi|261402191|ref|YP_003246415.1| - 0.015 15.2 0.1 0.047 13.6 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 gi|261402191|ref|YP_003246415.1| - 0.016 15.2 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|261402191|ref|YP_003246415.1| - 0.017 15.6 0.4 0.042 14.3 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|261402191|ref|YP_003246415.1| - 0.017 15.1 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Parvo_NS1 PF01057.17 gi|261402191|ref|YP_003246415.1| - 0.018 14.1 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATP_bind_1 PF03029.17 gi|261402191|ref|YP_003246415.1| - 0.019 14.8 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|261402191|ref|YP_003246415.1| - 0.022 14.5 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MeaB PF03308.16 gi|261402191|ref|YP_003246415.1| - 0.023 13.7 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 gi|261402191|ref|YP_003246415.1| - 0.024 14.6 0.1 0.027 14.4 0.1 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|261402191|ref|YP_003246415.1| - 0.027 14.4 0.0 0.061 13.2 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase ParA PF10609.9 gi|261402191|ref|YP_003246415.1| - 0.03 13.8 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase cobW PF02492.19 gi|261402191|ref|YP_003246415.1| - 0.048 13.3 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|261402191|ref|YP_003246415.1| - 0.049 12.8 0.0 0.082 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|261402191|ref|YP_003246415.1| - 0.059 12.8 0.0 0.078 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|261402191|ref|YP_003246415.1| - 0.061 12.4 0.0 0.082 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_21 PF13304.6 gi|261402191|ref|YP_003246415.1| - 0.098 12.4 0.1 0.098 12.4 0.1 1.3 1 1 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system RuvB_N PF05496.12 gi|261402191|ref|YP_003246415.1| - 0.11 12.3 0.0 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain CoaE PF01121.20 gi|261402191|ref|YP_003246415.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.5 1 1 0 1 1 1 0 Dephospho-CoA kinase Sigma54_activat PF00158.26 gi|261402191|ref|YP_003246415.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain TauE PF01925.19 gi|261402192|ref|YP_003246416.1| - 1.4e-45 155.8 26.6 1.7e-45 155.5 26.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4311 PF14188.6 gi|261402192|ref|YP_003246416.1| - 0.39 10.4 14.8 0.26 11.0 2.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4311) GDP_Man_Dehyd PF16363.5 gi|261402193|ref|YP_003246417.1| - 3.2e-58 197.7 0.0 3.8e-58 197.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|261402193|ref|YP_003246417.1| - 8.1e-49 166.3 0.0 1e-48 166.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|261402193|ref|YP_003246417.1| - 5.9e-11 41.9 0.0 8.4e-11 41.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|261402193|ref|YP_003246417.1| - 5.4e-10 38.9 0.0 8.7e-06 25.1 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|261402193|ref|YP_003246417.1| - 6.5e-10 38.6 0.0 0.00035 19.8 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|261402193|ref|YP_003246417.1| - 9.2e-09 34.8 0.0 1.6e-08 34.0 0.0 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|261402193|ref|YP_003246417.1| - 1.9e-05 24.2 0.0 2.8e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|261402193|ref|YP_003246417.1| - 0.0039 17.1 0.0 0.0055 16.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 gi|261402193|ref|YP_003246417.1| - 0.025 14.9 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|261402193|ref|YP_003246417.1| - 0.15 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 KR domain Sulfotransfer_1 PF00685.27 gi|261402194|ref|YP_003246418.1| - 1.1e-21 77.5 2.9 2.4e-21 76.4 2.9 1.7 1 1 0 1 1 1 1 Sulfotransferase domain Sulfotransfer_3 PF13469.6 gi|261402194|ref|YP_003246418.1| - 7.9e-19 68.9 0.0 9.1e-11 42.5 0.0 2.3 1 1 1 2 2 2 2 Sulfotransferase family Glyco_trans_1_2 PF13524.6 gi|261402195|ref|YP_003246419.1| - 1.1e-05 25.7 0.0 3e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 FANCL_C PF11793.8 gi|261402195|ref|YP_003246419.1| - 0.09 13.0 0.1 26 5.1 0.0 2.7 2 0 0 2 2 2 0 FANCL C-terminal domain SAC3 PF12209.8 gi|261402195|ref|YP_003246419.1| - 0.27 11.4 0.2 0.27 11.4 0.2 2.6 3 0 0 3 3 3 0 Leucine permease transcriptional regulator helical domain Glycos_transf_2 PF00535.26 gi|261402196|ref|YP_003246420.1| - 3.4e-22 79.0 0.8 3.4e-22 79.0 0.8 1.8 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|261402196|ref|YP_003246420.1| - 1e-13 51.7 0.0 1.7e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|261402196|ref|YP_003246420.1| - 1.6e-08 34.4 4.6 2.8e-08 33.6 4.4 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|261402196|ref|YP_003246420.1| - 4.7e-06 26.2 0.1 9.7e-06 25.2 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_trans_2_3 PF13632.6 gi|261402196|ref|YP_003246420.1| - 2e-05 24.6 0.0 9.9e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|261402196|ref|YP_003246420.1| - 0.00014 21.6 1.9 0.00033 20.4 1.9 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_transf_21 PF13506.6 gi|261402196|ref|YP_003246420.1| - 0.036 13.5 0.0 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|261402197|ref|YP_003246421.1| - 4e-34 117.6 0.1 2e-33 115.3 0.1 2.1 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|261402197|ref|YP_003246421.1| - 3.4e-19 69.6 0.0 6.2e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|261402197|ref|YP_003246421.1| - 2.4e-07 31.1 0.0 5.8e-07 29.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|261402197|ref|YP_003246421.1| - 2.2e-06 27.8 0.0 4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_20 PF00982.21 gi|261402197|ref|YP_003246421.1| - 0.012 14.3 0.7 0.023 13.4 0.1 1.7 2 0 0 2 2 2 0 Glycosyltransferase family 20 Glyco_transf_9 PF01075.17 gi|261402198|ref|YP_003246422.1| - 6.1e-16 58.5 0.0 1.1e-15 57.7 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase family 9 (heptosyltransferase) PS_pyruv_trans PF04230.13 gi|261402198|ref|YP_003246422.1| - 2.9 7.7 8.6 57 3.5 8.6 2.4 1 1 0 1 1 1 0 Polysaccharide pyruvyl transferase Epimerase PF01370.21 gi|261402199|ref|YP_003246423.1| - 3.4e-44 151.1 0.0 4e-44 150.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|261402199|ref|YP_003246423.1| - 1.6e-34 119.8 0.4 5.9e-34 118.0 0.4 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|261402199|ref|YP_003246423.1| - 3.5e-13 49.3 0.0 5.1e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|261402199|ref|YP_003246423.1| - 8e-13 48.0 0.1 1.6e-12 47.0 0.1 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|261402199|ref|YP_003246423.1| - 5.6e-10 38.8 0.2 3.7e-08 32.8 0.0 2.3 2 1 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|261402199|ref|YP_003246423.1| - 4.2e-07 29.4 0.1 1.2e-05 24.7 0.1 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Ldh_1_N PF00056.23 gi|261402199|ref|YP_003246423.1| - 0.0031 17.6 0.1 0.005 16.9 0.1 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain adh_short PF00106.25 gi|261402199|ref|YP_003246423.1| - 0.004 16.6 0.6 0.015 14.8 0.1 2.2 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|261402199|ref|YP_003246423.1| - 0.024 14.2 0.3 0.044 13.3 0.3 1.4 1 0 0 1 1 1 0 NmrA-like family NAD_binding_8 PF13450.6 gi|261402199|ref|YP_003246423.1| - 0.051 13.8 0.1 0.21 11.8 0.0 2.1 3 0 0 3 3 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.15 gi|261402199|ref|YP_003246423.1| - 0.081 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|261402199|ref|YP_003246423.1| - 0.085 13.4 0.2 0.3 11.7 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|261402199|ref|YP_003246423.1| - 0.15 11.6 0.1 1.2 8.7 0.1 2.1 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Glycos_transf_1 PF00534.20 gi|261402200|ref|YP_003246424.1| - 4.8e-42 143.4 1.4 7.4e-42 142.8 1.4 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|261402200|ref|YP_003246424.1| - 1.2e-27 97.0 0.0 1.6e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|261402200|ref|YP_003246424.1| - 7.9e-27 94.3 0.0 1.3e-26 93.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|261402200|ref|YP_003246424.1| - 3.7e-12 46.4 0.4 7.1e-12 45.5 0.4 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|261402200|ref|YP_003246424.1| - 4.6e-12 46.7 0.0 5.8e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|261402200|ref|YP_003246424.1| - 1.8e-10 41.0 0.0 3.8e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_9 PF01075.17 gi|261402201|ref|YP_003246425.1| - 6.9e-36 123.8 0.0 1.6e-35 122.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase family 9 (heptosyltransferase) Flavoprotein PF02441.19 gi|261402201|ref|YP_003246425.1| - 0.036 13.8 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 0 Flavoprotein UvrA_inter PF17760.1 gi|261402201|ref|YP_003246425.1| - 0.1 12.7 0.1 18 5.5 0.0 2.9 3 0 0 3 3 3 0 UvrA interaction domain Ta0938 PF11494.8 gi|261402203|ref|YP_003246427.1| - 0.035 14.4 1.1 0.085 13.1 1.1 1.7 1 0 0 1 1 1 0 Ta0938 NAD_kinase PF01513.21 gi|261402204|ref|YP_003246428.1| - 4.2e-77 259.2 0.6 1.5e-74 250.8 0.3 2.9 2 1 0 2 2 2 1 ATP-NAD kinase Inositol_P PF00459.25 gi|261402204|ref|YP_003246428.1| - 4.7e-24 85.3 0.1 5e-14 52.5 0.0 2.2 2 0 0 2 2 2 2 Inositol monophosphatase family FBPase PF00316.20 gi|261402204|ref|YP_003246428.1| - 0.0013 18.2 0.0 0.0029 17.1 0.0 1.5 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DAGK_cat PF00781.24 gi|261402204|ref|YP_003246428.1| - 0.021 14.4 0.1 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain OapA PF04225.12 gi|261402204|ref|YP_003246428.1| - 0.048 13.8 1.1 15 5.7 0.0 3.4 3 1 1 4 4 4 0 Opacity-associated protein A LysM-like domain PRC PF05239.16 gi|261402205|ref|YP_003246429.1| - 1.1e-16 60.6 0.4 1.3e-16 60.4 0.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF108 PF01958.18 gi|261402206|ref|YP_003246430.1| - 8.7e-27 93.3 1.0 1.4e-26 92.7 1.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF108 NAD_binding_3 PF03447.16 gi|261402206|ref|YP_003246430.1| - 7.6e-25 87.8 1.5 1.2e-24 87.2 0.6 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|261402206|ref|YP_003246430.1| - 2e-06 28.6 0.4 5e-06 27.3 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|261402206|ref|YP_003246430.1| - 2.5e-06 28.0 1.7 2.5e-06 28.0 1.7 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|261402206|ref|YP_003246430.1| - 0.088 13.0 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|261402206|ref|YP_003246430.1| - 0.091 12.4 1.6 0.26 10.9 1.1 2.1 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|261402206|ref|YP_003246430.1| - 0.096 12.9 1.1 0.27 11.5 1.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain IPT PF01745.16 gi|261402206|ref|YP_003246430.1| - 0.1 12.0 0.2 0.23 10.8 0.1 1.5 2 0 0 2 2 2 0 Isopentenyl transferase ThiF PF00899.21 gi|261402206|ref|YP_003246430.1| - 0.13 11.6 0.1 0.84 8.9 0.1 2.1 2 0 0 2 2 2 0 ThiF family Arm_3 PF16186.5 gi|261402206|ref|YP_003246430.1| - 0.15 11.6 1.7 12 5.6 0.0 3.0 2 1 1 3 3 3 0 Atypical Arm repeat ATP-grasp_3 PF02655.14 gi|261402207|ref|YP_003246431.1| - 1.4e-38 132.5 1.7 2.5e-38 131.6 1.7 1.4 1 0 0 1 1 1 1 ATP-grasp domain preATP-grasp_3 PF18301.1 gi|261402207|ref|YP_003246431.1| - 6.4e-10 39.2 0.0 1.2e-09 38.3 0.0 1.5 1 1 0 1 1 1 1 pre ATP-grasp 3 domain ATPgrasp_ST PF14397.6 gi|261402207|ref|YP_003246431.1| - 0.00047 19.5 1.4 0.0049 16.2 0.0 2.7 2 1 0 3 3 3 1 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|261402207|ref|YP_003246431.1| - 0.0027 17.4 2.5 0.045 13.5 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|261402207|ref|YP_003246431.1| - 0.0029 17.2 0.6 0.0073 15.9 0.1 1.8 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|261402207|ref|YP_003246431.1| - 0.0039 16.7 0.4 0.0081 15.7 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|261402207|ref|YP_003246431.1| - 0.022 14.3 0.8 0.022 14.3 0.8 2.0 2 1 0 2 2 2 0 RimK-like ATP-grasp domain DS PF01916.17 gi|261402208|ref|YP_003246432.1| - 4.8e-115 383.8 0.0 5.4e-115 383.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase TP_methylase PF00590.20 gi|261402209|ref|YP_003246433.1| - 4.1e-35 121.7 0.0 4.8e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases AAA_5 PF07728.14 gi|261402210|ref|YP_003246434.1| - 7.4e-26 90.8 0.0 2.7e-25 89.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|261402210|ref|YP_003246434.1| - 7.7e-16 57.8 0.1 2.3e-15 56.2 0.1 1.9 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|261402210|ref|YP_003246434.1| - 0.00021 21.7 0.7 0.00068 20.1 0.0 2.2 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|261402210|ref|YP_003246434.1| - 0.00045 19.4 0.0 0.0017 17.5 0.0 1.9 1 1 1 2 2 2 1 MCM P-loop domain AAA_3 PF07726.11 gi|261402210|ref|YP_003246434.1| - 0.00058 19.7 0.0 0.00099 19.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|261402210|ref|YP_003246434.1| - 0.0035 17.3 0.1 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase IstB_IS21 PF01695.17 gi|261402210|ref|YP_003246434.1| - 0.0052 16.5 0.0 0.0077 16.0 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein Viral_helicase1 PF01443.18 gi|261402210|ref|YP_003246434.1| - 0.013 15.3 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|261402210|ref|YP_003246434.1| - 0.014 15.8 0.0 0.03 14.7 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|261402210|ref|YP_003246434.1| - 0.03 13.9 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region VWA_2 PF13519.6 gi|261402211|ref|YP_003246435.1| - 1.3e-05 25.8 0.0 5.5e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|261402211|ref|YP_003246435.1| - 6.1e-05 22.5 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|261402211|ref|YP_003246435.1| - 0.0014 18.9 2.9 0.011 16.0 0.1 2.7 2 1 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.9 gi|261402211|ref|YP_003246435.1| - 0.0062 16.7 0.0 0.022 14.9 0.0 2.0 1 1 1 2 2 2 1 VWA-like domain (DUF2201) YojJ PF10372.9 gi|261402211|ref|YP_003246435.1| - 0.17 12.0 1.7 11 6.1 0.1 2.8 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus AMMECR1 PF01871.17 gi|261402212|ref|YP_003246436.1| - 8.4e-56 188.1 0.0 9.6e-56 188.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DNA_pol_B PF00136.21 gi|261402213|ref|YP_003246437.1| - 2.2e-62 211.3 10.8 1.9e-31 109.3 3.6 4.5 4 0 0 4 4 4 4 DNA polymerase family B Intein_splicing PF14890.6 gi|261402213|ref|YP_003246437.1| - 1.1e-52 177.5 34.3 1.5e-29 102.6 7.0 5.4 5 1 0 5 5 5 3 Intein splicing domain DNA_pol_B_exo1 PF03104.19 gi|261402213|ref|YP_003246437.1| - 1.1e-45 156.2 9.3 1.1e-45 156.2 9.3 3.0 4 0 0 4 4 4 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|261402213|ref|YP_003246437.1| - 5.2e-09 36.3 0.3 3.2e-08 33.7 0.3 2.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|261402213|ref|YP_003246437.1| - 0.00014 21.7 0.1 0.0003 20.5 0.1 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Hom_end_hint PF05203.16 gi|261402213|ref|YP_003246437.1| - 0.0014 18.6 0.0 0.012 15.5 0.0 2.6 2 0 0 2 2 2 1 Hom_end-associated Hint Vint PF14623.6 gi|261402213|ref|YP_003246437.1| - 0.03 14.1 0.0 0.19 11.5 0.0 2.3 2 0 0 2 2 2 0 Hint-domain Hint PF01079.20 gi|261402213|ref|YP_003246437.1| - 0.12 11.8 0.0 7.7 6.0 0.0 2.6 2 0 0 2 2 2 0 Hint module PBP_like PF12727.7 gi|261402214|ref|YP_003246438.1| - 1e-59 201.0 0.0 2e-59 200.0 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|261402214|ref|YP_003246438.1| - 4.6e-44 149.9 0.1 7.8e-44 149.2 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|261402214|ref|YP_003246438.1| - 2.5e-26 92.0 0.0 5e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|261402214|ref|YP_003246438.1| - 3.8e-17 62.2 0.0 1.2e-16 60.7 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) OpuAC PF04069.12 gi|261402214|ref|YP_003246438.1| - 0.017 14.7 0.0 0.045 13.3 0.0 1.7 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system CofC PF01983.16 gi|261402215|ref|YP_003246439.1| - 4.4e-97 323.5 4.6 4.9e-97 323.3 4.6 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|261402215|ref|YP_003246439.1| - 2.2e-07 31.3 0.0 3.2e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|261402215|ref|YP_003246439.1| - 4.9e-06 26.4 0.0 7.2e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) DUF5426 PF17473.2 gi|261402215|ref|YP_003246439.1| - 0.016 15.5 1.3 0.026 14.8 1.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5426) PHD_like PF12910.7 gi|261402215|ref|YP_003246439.1| - 0.11 12.5 1.4 0.29 11.2 0.4 1.9 1 1 1 2 2 2 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system Lactamase_B PF00753.27 gi|261402216|ref|YP_003246440.1| - 1.4e-21 77.4 0.0 1.6e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|261402216|ref|YP_003246440.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|261402216|ref|YP_003246440.1| - 0.00018 21.1 0.0 0.0002 20.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|261402216|ref|YP_003246440.1| - 0.063 12.7 0.1 0.091 12.2 0.1 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Auto_anti-p27 PF06677.12 gi|261402218|ref|YP_003246442.1| - 1.3e-13 50.8 1.8 2e-13 50.2 1.8 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|261402218|ref|YP_003246442.1| - 0.0065 16.5 0.8 0.011 15.8 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|261402218|ref|YP_003246442.1| - 0.0075 16.2 0.7 0.011 15.7 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbons CsgA PF17334.2 gi|261402218|ref|YP_003246442.1| - 0.015 16.0 1.8 0.026 15.2 1.8 1.5 1 0 0 1 1 1 0 Minor curli fiber component A MTHFR_C PF12225.8 gi|261402218|ref|YP_003246442.1| - 0.021 14.5 1.1 0.025 14.2 1.1 1.4 1 1 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal zf-C3HC4_2 PF13923.6 gi|261402218|ref|YP_003246442.1| - 0.03 14.2 1.7 0.055 13.3 1.7 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2688 PF10892.8 gi|261402218|ref|YP_003246442.1| - 0.03 13.8 0.6 0.1 12.1 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) Prok-RING_1 PF14446.6 gi|261402218|ref|YP_003246442.1| - 0.033 14.1 0.3 0.049 13.6 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|261402218|ref|YP_003246442.1| - 0.051 13.5 0.4 0.093 12.7 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|261402218|ref|YP_003246442.1| - 0.066 12.8 0.6 0.61 9.7 0.1 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region zf-C4_Topoisom PF01396.19 gi|261402218|ref|YP_003246442.1| - 0.074 12.8 5.5 0.43 10.4 0.4 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger MqsA_antitoxin PF15731.5 gi|261402218|ref|YP_003246442.1| - 0.083 13.0 0.6 0.94 9.6 0.6 2.0 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Elf1 PF05129.13 gi|261402218|ref|YP_003246442.1| - 0.096 12.7 1.5 6.1 7.0 0.1 2.4 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.11 gi|261402218|ref|YP_003246442.1| - 0.11 12.2 1.1 0.22 11.2 1.1 1.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|261402218|ref|YP_003246442.1| - 0.11 12.0 6.1 19 4.8 0.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|261402218|ref|YP_003246442.1| - 0.12 12.4 2.0 1.4 8.9 0.1 2.4 3 0 0 3 3 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.6 gi|261402218|ref|YP_003246442.1| - 0.13 12.8 3.6 1.2 9.7 0.3 2.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain RecR PF02132.15 gi|261402218|ref|YP_003246442.1| - 0.18 11.4 1.3 0.62 9.7 1.3 2.0 1 1 0 1 1 1 0 RecR protein NOB1_Zn_bind PF08772.11 gi|261402218|ref|YP_003246442.1| - 0.21 11.8 2.5 0.7 10.1 2.5 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|261402218|ref|YP_003246442.1| - 0.38 10.5 4.5 3.4 7.5 4.6 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|261402218|ref|YP_003246442.1| - 2.5 8.3 5.8 20 5.4 0.2 2.8 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Arch_flagellin PF01917.16 gi|261402219|ref|YP_003246443.1| - 4.2e-51 173.4 6.5 5e-51 173.1 6.5 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|261402220|ref|YP_003246444.1| - 6.4e-54 182.5 2.7 7.4e-54 182.3 2.7 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|261402221|ref|YP_003246445.1| - 6e-44 150.1 5.6 6.8e-44 149.9 5.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Pilin_N PF07790.11 gi|261402221|ref|YP_003246445.1| - 7.5 7.6 8.8 7.3 7.6 6.8 2.0 2 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal FlaC_arch PF05377.11 gi|261402222|ref|YP_003246446.1| - 2.6e-20 72.5 15.8 4.4e-19 68.6 4.2 3.5 3 1 0 3 3 3 1 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|261402222|ref|YP_003246446.1| - 0.00021 21.7 10.0 0.0076 16.7 2.4 2.3 2 0 0 2 2 2 2 Cell division protein ZapB CENP-F_leu_zip PF10473.9 gi|261402222|ref|YP_003246446.1| - 0.00027 21.0 9.7 0.00047 20.2 2.7 2.3 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BAR_3 PF16746.5 gi|261402222|ref|YP_003246446.1| - 0.00029 20.6 2.7 0.00035 20.4 2.7 1.1 1 0 0 1 1 1 1 BAR domain of APPL family SHE3 PF17078.5 gi|261402222|ref|YP_003246446.1| - 0.00089 19.0 8.9 0.0032 17.2 8.8 1.8 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 Syntaxin-6_N PF09177.11 gi|261402222|ref|YP_003246446.1| - 0.0011 19.5 3.2 0.11 13.0 0.7 2.3 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Prefoldin_2 PF01920.20 gi|261402222|ref|YP_003246446.1| - 0.0018 18.2 5.3 0.2 11.7 0.5 2.7 2 1 0 2 2 2 2 Prefoldin subunit MAD PF05557.13 gi|261402222|ref|YP_003246446.1| - 0.0021 16.6 5.1 0.0024 16.3 5.1 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein Sec34 PF04136.15 gi|261402222|ref|YP_003246446.1| - 0.0022 17.9 4.3 0.017 15.0 0.5 2.3 1 1 1 2 2 2 2 Sec34-like family Prominin PF05478.11 gi|261402222|ref|YP_003246446.1| - 0.0022 16.0 4.1 0.0027 15.7 4.1 1.0 1 0 0 1 1 1 1 Prominin TBK1_CCD1 PF18394.1 gi|261402222|ref|YP_003246446.1| - 0.0035 16.9 5.1 0.016 14.8 2.9 2.1 1 1 1 2 2 2 1 TANK-binding kinase 1 coiled-coil domain 1 APG6_N PF17675.1 gi|261402222|ref|YP_003246446.1| - 0.0036 17.8 5.1 0.068 13.7 1.6 2.2 2 0 0 2 2 2 1 Apg6 coiled-coil region DHR10 PF18595.1 gi|261402222|ref|YP_003246446.1| - 0.0066 16.5 2.9 1.6 8.8 0.3 2.3 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain Tropomyosin_1 PF12718.7 gi|261402222|ref|YP_003246446.1| - 0.0073 16.5 6.5 0.0073 16.5 6.5 2.5 1 1 2 3 3 3 1 Tropomyosin like TMPIT PF07851.13 gi|261402222|ref|YP_003246446.1| - 0.008 15.5 1.1 0.01 15.1 1.1 1.1 1 0 0 1 1 1 1 TMPIT-like protein HALZ PF02183.18 gi|261402222|ref|YP_003246446.1| - 0.0093 16.2 8.7 0.12 12.6 1.7 3.2 3 0 0 3 3 3 1 Homeobox associated leucine zipper PilJ PF13675.6 gi|261402222|ref|YP_003246446.1| - 0.01 15.9 0.0 0.053 13.5 0.0 1.8 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term TMF_TATA_bd PF12325.8 gi|261402222|ref|YP_003246446.1| - 0.011 16.0 3.6 0.011 16.0 3.6 2.3 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding HMMR_C PF15908.5 gi|261402222|ref|YP_003246446.1| - 0.013 15.8 1.8 0.043 14.1 1.8 2.0 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor C-terminal CorA PF01544.18 gi|261402222|ref|YP_003246446.1| - 0.014 14.7 6.7 0.019 14.3 6.7 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein BRE1 PF08647.11 gi|261402222|ref|YP_003246446.1| - 0.017 15.2 4.7 0.62 10.2 1.1 2.3 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase HCR PF07111.12 gi|261402222|ref|YP_003246446.1| - 0.019 13.0 2.7 0.022 12.9 2.7 1.0 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) Jnk-SapK_ap_N PF09744.9 gi|261402222|ref|YP_003246446.1| - 0.02 15.1 6.9 0.11 12.7 0.9 2.2 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF1664 PF07889.12 gi|261402222|ref|YP_003246446.1| - 0.022 14.8 3.5 0.19 11.7 2.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) ADIP PF11559.8 gi|261402222|ref|YP_003246446.1| - 0.022 14.9 3.6 0.35 10.9 0.6 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding FapA PF03961.13 gi|261402222|ref|YP_003246446.1| - 0.022 13.4 4.4 0.029 13.0 3.9 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A Fib_alpha PF08702.10 gi|261402222|ref|YP_003246446.1| - 0.023 14.9 4.1 0.032 14.4 3.5 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family TACC_C PF05010.14 gi|261402222|ref|YP_003246446.1| - 0.026 14.3 3.4 0.043 13.6 3.4 1.4 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal PspA_IM30 PF04012.12 gi|261402222|ref|YP_003246446.1| - 0.026 14.1 0.2 0.97 9.0 0.1 2.1 2 0 0 2 2 2 0 PspA/IM30 family Glutaminase PF04960.15 gi|261402222|ref|YP_003246446.1| - 0.027 13.7 0.1 0.034 13.3 0.1 1.3 1 0 0 1 1 1 0 Glutaminase BLOC1_2 PF10046.9 gi|261402222|ref|YP_003246446.1| - 0.027 14.7 7.3 1.4 9.2 1.2 3.0 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.21 gi|261402222|ref|YP_003246446.1| - 0.028 14.9 1.9 0.093 13.2 1.9 1.9 1 1 0 1 1 1 0 Spectrin repeat DUF2431 PF10354.9 gi|261402222|ref|YP_003246446.1| - 0.031 14.5 0.3 0.087 13.1 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2431) Snapin_Pallidin PF14712.6 gi|261402222|ref|YP_003246446.1| - 0.035 14.5 4.3 0.27 11.7 3.3 2.5 1 1 1 2 2 2 0 Snapin/Pallidin Fez1 PF06818.15 gi|261402222|ref|YP_003246446.1| - 0.035 14.6 1.6 0.044 14.2 1.6 1.2 1 0 0 1 1 1 0 Fez1 Laminin_II PF06009.12 gi|261402222|ref|YP_003246446.1| - 0.039 14.0 5.8 0.13 12.2 1.7 2.3 1 1 1 2 2 2 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|261402222|ref|YP_003246446.1| - 0.044 13.8 3.0 1.4 9.0 0.7 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein CLZ PF16526.5 gi|261402222|ref|YP_003246446.1| - 0.048 14.0 6.8 0.77 10.2 1.9 2.9 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels COG5 PF10392.9 gi|261402222|ref|YP_003246446.1| - 0.052 13.7 4.4 2.4 8.3 1.7 2.8 1 1 1 2 2 2 0 Golgi transport complex subunit 5 PI_PP_I PF18363.1 gi|261402222|ref|YP_003246446.1| - 0.085 13.0 1.5 0.55 10.4 0.3 2.3 1 1 1 2 2 2 0 Phosphoinositide phosphatase insertion domain KxDL PF10241.9 gi|261402222|ref|YP_003246446.1| - 0.088 13.1 2.7 4.8 7.5 0.0 2.7 2 1 0 2 2 2 0 Uncharacterized conserved protein Spc7 PF08317.11 gi|261402222|ref|YP_003246446.1| - 0.096 11.6 6.9 0.2 10.5 6.0 1.7 1 1 1 2 2 2 0 Spc7 kinetochore protein ATG16 PF08614.11 gi|261402222|ref|YP_003246446.1| - 0.099 12.9 5.8 0.091 13.0 1.6 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) YabA PF06156.13 gi|261402222|ref|YP_003246446.1| - 0.11 13.1 8.9 0.86 10.3 8.9 2.2 1 1 0 1 1 1 0 Initiation control protein YabA DUF4446 PF14584.6 gi|261402222|ref|YP_003246446.1| - 0.12 12.3 4.3 0.43 10.6 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) COG2 PF06148.11 gi|261402222|ref|YP_003246446.1| - 0.18 11.9 8.1 0.13 12.4 1.1 2.8 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Cnn_1N PF07989.11 gi|261402222|ref|YP_003246446.1| - 0.2 11.8 8.6 0.2 11.8 6.0 2.3 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 TraF_2 PF13729.6 gi|261402222|ref|YP_003246446.1| - 0.21 10.9 1.5 2.9 7.2 0.1 2.1 1 1 0 2 2 2 0 F plasmid transfer operon, TraF, protein WXG100 PF06013.12 gi|261402222|ref|YP_003246446.1| - 0.23 11.7 0.6 19 5.6 0.1 2.9 2 1 1 3 3 3 0 Proteins of 100 residues with WXG Cep57_CLD PF14073.6 gi|261402222|ref|YP_003246446.1| - 0.24 11.4 7.8 3 7.8 7.8 2.2 1 1 0 1 1 1 0 Centrosome localisation domain of Cep57 Fungal_TACC PF12709.7 gi|261402222|ref|YP_003246446.1| - 0.27 11.7 5.1 2.3 8.7 0.8 2.6 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins TolA_bind_tri PF16331.5 gi|261402222|ref|YP_003246446.1| - 0.28 11.3 3.2 2.3 8.3 1.4 2.4 2 1 0 2 2 2 0 TolA binding protein trimerisation zf-C4H2 PF10146.9 gi|261402222|ref|YP_003246446.1| - 0.31 11.3 7.7 0.44 10.8 7.7 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein KASH_CCD PF14662.6 gi|261402222|ref|YP_003246446.1| - 0.32 10.8 11.1 0.11 12.3 7.3 1.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH XhlA PF10779.9 gi|261402222|ref|YP_003246446.1| - 0.35 11.1 8.4 5.4 7.3 1.2 3.0 2 2 0 2 2 2 0 Haemolysin XhlA KELK PF15796.5 gi|261402222|ref|YP_003246446.1| - 0.37 11.3 5.1 0.25 11.8 1.4 2.1 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase HalX PF08663.10 gi|261402222|ref|YP_003246446.1| - 0.39 11.1 4.0 9.2 6.7 0.4 2.9 2 1 0 2 2 2 0 HalX domain LMBR1 PF04791.16 gi|261402222|ref|YP_003246446.1| - 0.39 9.6 1.8 0.39 9.6 1.8 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF1640 PF07798.11 gi|261402222|ref|YP_003246446.1| - 0.51 10.4 7.3 3 7.8 6.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) bZIP_1 PF00170.21 gi|261402222|ref|YP_003246446.1| - 0.53 10.4 13.9 1.9 8.6 2.3 3.2 2 1 1 3 3 3 0 bZIP transcription factor SAS4 PF15460.6 gi|261402222|ref|YP_003246446.1| - 0.66 10.1 5.2 0.5 10.5 2.9 2.0 2 1 0 2 2 1 0 Something about silencing, SAS, complex subunit 4 Mod_r PF07200.13 gi|261402222|ref|YP_003246446.1| - 0.68 10.0 6.9 8.3 6.5 6.9 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF4795 PF16043.5 gi|261402222|ref|YP_003246446.1| - 0.72 9.4 10.8 9.6 5.7 10.8 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Fzo_mitofusin PF04799.13 gi|261402222|ref|YP_003246446.1| - 0.92 9.0 4.9 6.9 6.2 1.0 2.1 1 1 1 2 2 2 0 fzo-like conserved region SlyX PF04102.12 gi|261402222|ref|YP_003246446.1| - 1.3 9.7 6.3 4.8 7.9 0.7 2.7 2 1 0 2 2 2 0 SlyX DUF4806 PF16064.5 gi|261402222|ref|YP_003246446.1| - 1.9 8.9 5.5 0.98 9.8 0.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4806) DASH_Dad3 PF08656.10 gi|261402222|ref|YP_003246446.1| - 2.5 8.2 9.9 11 6.2 1.7 3.0 1 1 1 2 2 2 0 DASH complex subunit Dad3 Spc24 PF08286.11 gi|261402222|ref|YP_003246446.1| - 2.9 8.2 10.1 1.9e+02 2.4 10.1 2.8 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF5595 PF18077.1 gi|261402222|ref|YP_003246446.1| - 3.1 7.9 7.2 9.8 6.3 0.1 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF5595) Arch_fla_DE PF04659.13 gi|261402223|ref|YP_003246447.1| - 8.8e-29 99.2 0.4 3e-28 97.5 0.0 2.1 2 0 0 2 2 2 1 Archaeal flagella protein TFIIE_beta PF02186.15 gi|261402223|ref|YP_003246447.1| - 0.055 13.8 2.3 1.1 9.5 0.0 3.1 2 1 1 3 3 3 0 TFIIE beta subunit core domain DUF4175 PF13779.6 gi|261402223|ref|YP_003246447.1| - 0.083 10.8 1.9 0.11 10.4 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) RP-C_C PF11800.8 gi|261402223|ref|YP_003246447.1| - 0.21 11.7 2.0 0.3 11.1 2.0 1.3 1 0 0 1 1 1 0 Replication protein C C-terminal region Allexi_40kDa PF05549.11 gi|261402223|ref|YP_003246447.1| - 0.51 9.8 4.8 3.5 7.1 4.4 2.2 2 1 0 2 2 2 0 Allexivirus 40kDa protein Arch_fla_DE PF04659.13 gi|261402224|ref|YP_003246448.1| - 1e-27 95.8 0.0 1.4e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal flagella protein Arch_flagellin PF01917.16 gi|261402225|ref|YP_003246449.1| - 0.00013 22.2 0.3 0.00016 21.9 0.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Col_cuticle_N PF01484.17 gi|261402225|ref|YP_003246449.1| - 0.049 13.7 0.7 0.095 12.8 0.7 1.5 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain ABC_export PF16962.5 gi|261402225|ref|YP_003246449.1| - 0.052 12.0 0.4 0.066 11.7 0.4 1.2 1 0 0 1 1 1 0 Putative ABC exporter Cadherin_5 PF17892.1 gi|261402225|ref|YP_003246449.1| - 0.49 10.4 3.8 1.5 8.8 0.2 2.3 1 1 1 2 2 2 0 Cadherin-like domain Arch_flagellin PF01917.16 gi|261402226|ref|YP_003246450.1| - 5.8e-29 101.4 2.4 6.4e-29 101.2 2.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4926 PF16277.5 gi|261402226|ref|YP_003246450.1| - 0.081 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4926) ATPase PF06745.13 gi|261402227|ref|YP_003246451.1| - 3e-12 46.4 0.1 4.1e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|261402227|ref|YP_003246451.1| - 3.2e-05 23.6 0.0 0.00015 21.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|261402227|ref|YP_003246451.1| - 5.8e-05 22.5 0.2 9.8e-05 21.7 0.2 1.6 1 1 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|261402227|ref|YP_003246451.1| - 6.6e-05 22.4 0.0 0.00011 21.7 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|261402227|ref|YP_003246451.1| - 0.0024 18.1 0.1 0.0039 17.5 0.1 1.3 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|261402227|ref|YP_003246451.1| - 0.0048 16.4 0.0 0.074 12.5 0.0 2.0 2 0 0 2 2 2 1 recA bacterial DNA recombination protein PAXNEB PF05625.11 gi|261402227|ref|YP_003246451.1| - 0.0049 16.1 0.0 0.011 14.9 0.0 1.5 2 0 0 2 2 2 1 PAXNEB protein AAA PF00004.29 gi|261402227|ref|YP_003246451.1| - 0.0058 17.1 0.4 0.014 15.9 0.4 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|261402227|ref|YP_003246451.1| - 0.0064 16.5 0.5 0.019 15.0 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.6 gi|261402227|ref|YP_003246451.1| - 0.018 13.9 0.0 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Elong_Iki1 PF10483.9 gi|261402227|ref|YP_003246451.1| - 0.029 13.9 0.4 0.04 13.4 0.4 1.3 1 1 0 1 1 1 0 Elongator subunit Iki1 IstB_IS21 PF01695.17 gi|261402227|ref|YP_003246451.1| - 0.032 14.0 0.1 0.063 13.0 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein SEN1_N PF12726.7 gi|261402227|ref|YP_003246451.1| - 0.049 11.9 0.1 0.058 11.6 0.1 1.0 1 0 0 1 1 1 0 SEN1 N terminal AAA_28 PF13521.6 gi|261402227|ref|YP_003246451.1| - 0.062 13.5 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.9 gi|261402227|ref|YP_003246451.1| - 0.068 12.3 0.1 0.15 11.2 0.0 1.6 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 T2SSE PF00437.20 gi|261402228|ref|YP_003246452.1| - 4.3e-46 157.2 0.0 6.6e-46 156.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|261402228|ref|YP_003246452.1| - 0.00053 19.7 0.0 0.0014 18.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|261402228|ref|YP_003246452.1| - 0.015 15.8 0.0 0.029 14.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|261402228|ref|YP_003246452.1| - 0.017 15.4 0.0 0.071 13.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain YaiA PF16362.5 gi|261402228|ref|YP_003246452.1| - 0.02 15.0 0.0 0.068 13.3 0.0 1.8 2 0 0 2 2 2 0 YaiA protein AAA_15 PF13175.6 gi|261402228|ref|YP_003246452.1| - 0.026 14.3 0.1 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|261402228|ref|YP_003246452.1| - 0.098 13.2 3.1 0.18 12.3 1.2 2.2 2 0 0 2 2 2 0 AAA domain Microtub_bd PF16796.5 gi|261402228|ref|YP_003246452.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding DUF4303 PF14136.6 gi|261402228|ref|YP_003246452.1| - 0.12 12.1 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) AAA_16 PF13191.6 gi|261402228|ref|YP_003246452.1| - 0.21 12.0 0.0 0.9 9.9 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain T2SSF PF00482.23 gi|261402229|ref|YP_003246453.1| - 2.9e-20 72.5 0.0 1.2e-12 47.9 0.2 3.7 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F Peptidase_A24 PF01478.18 gi|261402230|ref|YP_003246454.1| - 7.9e-13 48.8 13.9 1.4e-12 48.0 13.9 1.4 1 0 0 1 1 1 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|261402230|ref|YP_003246454.1| - 0.00041 20.8 1.3 0.00041 20.8 1.3 4.1 3 1 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II DUF1495 PF07381.11 gi|261402232|ref|YP_003246456.1| - 9.3e-36 121.5 0.6 1.1e-35 121.4 0.6 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|261402232|ref|YP_003246456.1| - 0.027 14.2 0.0 0.027 14.2 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) DUF505 PF04458.12 gi|261402232|ref|YP_003246456.1| - 0.13 10.6 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Methyltransf_31 PF13847.6 gi|261402233|ref|YP_003246457.1| - 1.2e-16 60.8 0.1 1.8e-15 57.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261402233|ref|YP_003246457.1| - 5.4e-10 39.8 0.0 1.2e-09 38.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|261402233|ref|YP_003246457.1| - 8.2e-10 39.3 0.0 7.9e-09 36.2 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|261402233|ref|YP_003246457.1| - 1.2e-09 38.7 0.0 2.8e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261402233|ref|YP_003246457.1| - 2.1e-08 34.2 0.0 3.7e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|261402233|ref|YP_003246457.1| - 3.3e-07 29.9 0.4 1.5e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|261402233|ref|YP_003246457.1| - 0.0032 17.3 0.0 0.0046 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|261402233|ref|YP_003246457.1| - 0.0088 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|261402233|ref|YP_003246457.1| - 0.0098 15.2 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_33 PF10017.9 gi|261402233|ref|YP_003246457.1| - 0.061 12.5 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Radical_SAM PF04055.21 gi|261402234|ref|YP_003246458.1| - 5.9e-20 72.3 0.1 1.3e-17 64.6 0.1 2.1 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|261402234|ref|YP_003246458.1| - 3.3e-13 50.1 0.2 3.3e-13 50.1 0.2 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|261402234|ref|YP_003246458.1| - 2.4e-10 40.6 3.1 4.5e-10 39.7 0.3 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF4980 PF16352.5 gi|261402234|ref|YP_003246458.1| - 0.0022 17.9 0.1 0.0043 17.0 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4980) SPASM PF13186.6 gi|261402234|ref|YP_003246458.1| - 0.0043 17.5 0.2 0.011 16.2 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain DUF1844 PF08899.11 gi|261402234|ref|YP_003246458.1| - 0.059 13.7 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1844) CobN-Mg_chel PF02514.16 gi|261402235|ref|YP_003246459.1| - 0 1337.9 0.0 0 1337.7 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|261402235|ref|YP_003246459.1| - 0.00095 18.9 0.0 0.0028 17.4 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain DUF3921 PF13060.6 gi|261402235|ref|YP_003246459.1| - 0.06 13.4 0.1 0.42 10.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3921) HTH_Crp_2 PF13545.6 gi|261402235|ref|YP_003246459.1| - 0.086 12.8 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4509 PF14970.6 gi|261402235|ref|YP_003246459.1| - 0.087 12.7 0.2 0.18 11.7 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4509) JmjN PF02375.17 gi|261402235|ref|YP_003246459.1| - 2.1 8.4 5.8 4.5 7.3 0.2 4.3 5 0 0 5 5 5 0 jmjN domain DUF104 PF01954.16 gi|261402236|ref|YP_003246460.1| - 2.7e-15 56.5 5.7 3.2e-15 56.3 5.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 AAA_lid_2 PF17863.1 gi|261402237|ref|YP_003246461.1| - 2e-22 78.8 0.0 3.8e-22 77.9 0.0 1.5 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|261402237|ref|YP_003246461.1| - 1.1e-11 44.5 0.1 1.3e-06 28.0 0.0 2.6 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|261402237|ref|YP_003246461.1| - 2.6e-10 40.4 0.0 4.2e-06 26.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|261402237|ref|YP_003246461.1| - 0.00014 21.0 0.3 0.021 13.9 0.0 3.0 2 2 0 2 2 2 1 MCM P-loop domain AAA_16 PF13191.6 gi|261402237|ref|YP_003246461.1| - 0.0038 17.6 0.0 0.0098 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|261402237|ref|YP_003246461.1| - 0.0039 17.5 0.1 0.016 15.5 0.0 2.0 2 2 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|261402237|ref|YP_003246461.1| - 0.0082 15.9 0.0 3.2 7.4 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49_C PF17856.1 gi|261402237|ref|YP_003246461.1| - 0.024 14.8 1.3 0.061 13.5 1.3 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_3 PF07726.11 gi|261402237|ref|YP_003246461.1| - 0.038 13.8 0.0 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|261402237|ref|YP_003246461.1| - 0.056 13.9 0.3 0.55 10.7 0.1 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF853 PF05872.12 gi|261402237|ref|YP_003246461.1| - 0.13 10.8 0.0 0.13 10.8 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Metallophos_2 PF12850.7 gi|261402238|ref|YP_003246462.1| - 3.8e-29 102.0 0.0 6.1e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|261402238|ref|YP_003246462.1| - 8.7e-13 49.2 2.1 6.5e-12 46.4 2.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|261402238|ref|YP_003246462.1| - 0.039 13.3 0.0 0.086 12.1 0.0 1.6 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily FBPase_2 PF06874.11 gi|261402238|ref|YP_003246462.1| - 0.046 12.0 0.2 0.069 11.4 0.2 1.3 1 0 0 1 1 1 0 Firmicute fructose-1,6-bisphosphatase Sec61_beta PF03911.16 gi|261402239|ref|YP_003246463.1| - 2.2e-12 46.8 0.1 2.5e-12 46.6 0.1 1.1 1 0 0 1 1 1 1 Sec61beta family AAA_21 PF13304.6 gi|261402241|ref|YP_003246465.1| - 2.2e-24 86.8 5.2 5.1e-23 82.3 5.2 2.2 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|261402241|ref|YP_003246465.1| - 3.9e-24 86.1 33.2 3.7e-23 82.8 25.7 2.7 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|261402241|ref|YP_003246465.1| - 1.2e-06 28.1 1.9 3.4e-05 23.4 1.9 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.8 gi|261402241|ref|YP_003246465.1| - 6.3e-05 22.4 0.1 0.00087 18.6 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|261402241|ref|YP_003246465.1| - 0.00027 21.5 12.0 0.0035 17.9 8.4 3.0 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|261402241|ref|YP_003246465.1| - 0.0081 16.2 0.9 1.5 8.8 0.1 2.5 2 0 0 2 2 2 2 AAA domain FlgI PF02119.16 gi|261402241|ref|YP_003246465.1| - 0.013 14.4 0.9 0.02 13.8 0.9 1.2 1 0 0 1 1 1 0 Flagellar P-ring protein AAA_13 PF13166.6 gi|261402241|ref|YP_003246465.1| - 0.024 13.3 6.0 0.066 11.8 0.6 2.2 2 0 0 2 2 2 0 AAA domain Mqo PF06039.15 gi|261402241|ref|YP_003246465.1| - 0.052 12.1 0.0 0.085 11.4 0.0 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) DFP PF04127.15 gi|261402242|ref|YP_003246466.1| - 3.6e-49 167.1 0.0 1e-48 165.6 0.0 1.7 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|261402242|ref|YP_003246466.1| - 5.1e-34 117.3 3.8 5.4e-34 117.2 1.4 2.1 2 0 0 2 2 2 1 Flavoprotein CompInhib_SCIN PF11546.8 gi|261402242|ref|YP_003246466.1| - 0.8 9.8 6.1 0.16 12.0 1.7 2.3 2 0 0 2 2 2 0 Staphylococcal complement inhibitor SCIN KHA PF11834.8 gi|261402242|ref|YP_003246466.1| - 1.2 9.3 4.5 17 5.6 0.3 3.9 4 1 0 4 4 4 0 KHA, dimerisation domain of potassium ion channel UPF0113_N PF17833.1 gi|261402242|ref|YP_003246466.1| - 2.2 8.9 7.3 6 7.5 1.3 4.1 3 1 1 4 4 4 0 UPF0113 Pre-PUA domain zinc_ribbon_4 PF13717.6 gi|261402243|ref|YP_003246467.1| - 0.001 18.9 1.7 0.18 11.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|261402243|ref|YP_003246467.1| - 0.0022 17.8 5.0 0.0028 17.5 5.0 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|261402243|ref|YP_003246467.1| - 0.0037 17.2 0.5 0.94 9.5 0.0 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon HypA PF01155.19 gi|261402243|ref|YP_003246467.1| - 0.0073 16.3 0.4 0.0073 16.3 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2614 PF11023.8 gi|261402243|ref|YP_003246467.1| - 0.02 14.9 0.6 0.02 14.9 0.6 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-ribbon_3 PF13248.6 gi|261402243|ref|YP_003246467.1| - 0.062 12.7 4.2 3.9 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|261402243|ref|YP_003246467.1| - 0.09 13.0 2.7 0.25 11.6 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain IBR PF01485.21 gi|261402243|ref|YP_003246467.1| - 0.11 12.7 4.5 0.89 9.8 0.5 1.9 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_5 PF13719.6 gi|261402243|ref|YP_003246467.1| - 0.29 10.9 6.3 1.4 8.7 6.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|261402243|ref|YP_003246467.1| - 0.44 10.6 6.6 2.5 8.2 0.7 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C3H2C3 PF17122.5 gi|261402243|ref|YP_003246467.1| - 0.95 9.6 8.0 5.7 7.1 8.0 1.9 1 1 1 2 2 2 0 Zinc-finger zf-H2C2_2 PF13465.6 gi|261402243|ref|YP_003246467.1| - 8 7.1 9.3 0.64 10.5 1.8 2.1 2 0 0 2 2 2 0 Zinc-finger double domain KH_2 PF07650.17 gi|261402244|ref|YP_003246468.1| - 0.0024 17.7 1.2 0.0065 16.3 1.2 1.8 1 0 0 1 1 1 1 KH domain PS_Dcarbxylase PF02666.15 gi|261402245|ref|YP_003246469.1| - 7.6e-39 133.3 0.1 9.1e-39 133.1 0.1 1.1 1 0 0 1 1 1 1 Phosphatidylserine decarboxylase Biotin_lipoyl PF00364.22 gi|261402245|ref|YP_003246469.1| - 0.0086 15.9 0.1 11 5.9 0.0 3.3 3 0 0 3 3 3 2 Biotin-requiring enzyme tRNA_anti-codon PF01336.25 gi|261402246|ref|YP_003246470.1| - 2.3e-12 46.7 0.6 1.9e-08 34.2 0.2 2.3 1 1 1 2 2 2 2 OB-fold nucleic acid binding domain Ada_Zn_binding PF02805.16 gi|261402246|ref|YP_003246470.1| - 0.00017 21.5 0.0 0.00027 20.9 0.0 1.5 1 1 0 1 1 1 1 Metal binding domain of Ada RMI2 PF16100.5 gi|261402246|ref|YP_003246470.1| - 0.00037 20.3 0.4 0.25 11.2 0.0 2.2 1 1 1 2 2 2 2 RecQ-mediated genome instability protein 2 DUF4131 PF13567.6 gi|261402246|ref|YP_003246470.1| - 0.0028 17.3 0.0 0.0059 16.3 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4131) tRNA_anti_2 PF13742.6 gi|261402246|ref|YP_003246470.1| - 0.0062 16.7 0.1 0.014 15.6 0.1 1.6 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain S_layer_N PF05123.12 gi|261402247|ref|YP_003246471.1| - 1.5e-72 244.8 28.1 2.7e-40 139.0 6.3 2.6 3 0 0 3 3 3 2 S-layer like family, N-terminal region S_layer_C PF05124.12 gi|261402247|ref|YP_003246471.1| - 8e-66 222.2 5.2 8e-66 222.2 5.2 2.6 2 1 0 2 2 2 1 S-layer like family, C-terminal region CbiA PF01656.23 gi|261402248|ref|YP_003246472.1| - 2.4e-27 95.5 0.3 3e-27 95.2 0.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|261402248|ref|YP_003246472.1| - 1.1e-10 41.5 1.7 3e-05 23.6 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|261402248|ref|YP_003246472.1| - 2e-10 40.4 2.2 7.2e-06 25.4 0.0 3.1 2 1 1 3 3 3 2 Anion-transporting ATPase AAA_31 PF13614.6 gi|261402248|ref|YP_003246472.1| - 1.1e-08 35.1 0.0 1.4e-07 31.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|261402248|ref|YP_003246472.1| - 1.1e-07 31.6 2.1 0.0017 17.8 0.0 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|261402248|ref|YP_003246472.1| - 5.2e-07 29.4 0.0 0.0038 16.7 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|261402248|ref|YP_003246472.1| - 4.6e-06 26.6 1.8 0.0052 16.6 0.2 2.3 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|261402248|ref|YP_003246472.1| - 8.4e-05 22.5 3.3 0.0019 18.1 0.0 2.3 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|261402248|ref|YP_003246472.1| - 0.00071 20.0 0.0 0.0012 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain PTS_IIB PF02302.17 gi|261402248|ref|YP_003246472.1| - 0.0039 17.9 0.1 3.6 8.3 0.1 2.7 3 0 0 3 3 2 2 PTS system, Lactose/Cellobiose specific IIB subunit AAA_24 PF13479.6 gi|261402248|ref|YP_003246472.1| - 0.0057 16.4 0.8 0.15 11.8 0.1 2.8 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|261402248|ref|YP_003246472.1| - 0.035 13.8 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1847 PF08901.11 gi|261402248|ref|YP_003246472.1| - 0.052 13.2 0.1 10 5.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1847) ATP_bind_1 PF03029.17 gi|261402248|ref|YP_003246472.1| - 0.064 13.0 0.2 0.14 12.0 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CENP-S PF15630.6 gi|261402248|ref|YP_003246472.1| - 0.1 13.0 0.0 0.38 11.2 0.0 2.0 1 0 0 1 1 1 0 CENP-S protein Sigma54_activat PF00158.26 gi|261402248|ref|YP_003246472.1| - 0.12 12.1 0.1 0.35 10.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|261402248|ref|YP_003246472.1| - 0.25 11.6 0.8 0.79 10.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain Radical_SAM PF04055.21 gi|261402249|ref|YP_003246473.1| - 1.3e-26 93.9 0.1 2.2e-26 93.2 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|261402249|ref|YP_003246473.1| - 1.3e-19 70.4 1.1 1.5e-19 70.2 0.1 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|261402249|ref|YP_003246473.1| - 6.5e-12 45.9 0.5 1.7e-11 44.6 0.3 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|261402249|ref|YP_003246473.1| - 4.4e-11 42.9 0.2 1e-10 41.8 0.2 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Baculo_p48 PF04878.13 gi|261402249|ref|YP_003246473.1| - 0.027 13.4 6.2 0.22 10.4 2.1 2.2 1 1 1 2 2 2 0 Baculovirus P48 protein zf-CCHC PF00098.23 gi|261402249|ref|YP_003246473.1| - 0.054 13.6 0.9 0.096 12.8 0.9 1.4 1 0 0 1 1 1 0 Zinc knuckle zf-C2H2_10 PF16588.5 gi|261402249|ref|YP_003246473.1| - 1.2 8.9 6.1 0.65 9.8 3.5 1.8 2 0 0 2 2 2 0 C2H2 zinc-finger FKBP26_C PF18046.1 gi|261402250|ref|YP_003246474.1| - 3.3e-27 94.4 4.3 7.1e-27 93.3 4.3 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|261402250|ref|YP_003246474.1| - 3.8e-15 56.0 0.0 6.8e-15 55.2 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase NfeD PF01957.18 gi|261402251|ref|YP_003246475.1| - 4.2e-18 65.5 1.1 7.7e-18 64.7 1.1 1.4 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Band_7 PF01145.25 gi|261402252|ref|YP_003246476.1| - 8e-37 127.0 1.7 8e-37 127.0 1.7 1.5 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|261402252|ref|YP_003246476.1| - 0.004 16.9 0.3 0.0065 16.2 0.3 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family Flot PF15975.5 gi|261402252|ref|YP_003246476.1| - 0.013 15.7 2.6 0.013 15.7 2.6 2.3 1 1 0 2 2 2 0 Flotillin Glyco_hydro_38 PF18438.1 gi|261402252|ref|YP_003246476.1| - 0.14 12.2 1.2 2.1 8.4 0.1 2.4 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal domain 1 SirA PF10747.9 gi|261402252|ref|YP_003246476.1| - 0.29 11.5 3.0 1.4 9.3 0.4 2.3 1 1 1 2 2 2 0 Sporulation inhibitor of replication protein SirA FlgN PF05130.12 gi|261402252|ref|YP_003246476.1| - 0.45 11.0 7.7 0.7 10.4 7.7 1.2 1 0 0 1 1 1 0 FlgN protein eRF1_2 PF03464.15 gi|261402253|ref|YP_003246477.1| - 7.6e-46 155.7 0.0 1.9e-45 154.4 0.0 1.7 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|261402253|ref|YP_003246477.1| - 2.1e-33 115.2 2.2 6.7e-33 113.5 2.2 1.9 1 0 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|261402253|ref|YP_003246477.1| - 1.2e-13 51.4 0.0 4.9e-13 49.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|261402253|ref|YP_003246477.1| - 1.3e-13 51.1 0.0 2.5e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 acVLRF1 PF18859.1 gi|261402253|ref|YP_003246477.1| - 3.4e-12 46.8 0.0 2.8e-11 43.8 0.0 2.1 1 1 1 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor Zn-ribbon_8 PF09723.10 gi|261402253|ref|YP_003246477.1| - 0.0056 16.8 3.1 0.058 13.5 0.2 2.7 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|261402253|ref|YP_003246477.1| - 0.012 15.6 0.3 0.026 14.6 0.3 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|261402253|ref|YP_003246477.1| - 0.02 14.8 0.5 2.1 8.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|261402253|ref|YP_003246477.1| - 0.11 13.3 1.0 0.22 12.3 1.0 1.4 1 0 0 1 1 1 0 zinc-ribbon family Lar_restr_allev PF14354.6 gi|261402253|ref|YP_003246477.1| - 0.18 12.2 0.6 4.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.16 gi|261402253|ref|YP_003246477.1| - 0.63 10.0 4.4 1 9.3 0.2 2.7 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit NAD_synthase PF02540.17 gi|261402254|ref|YP_003246478.1| - 1.1e-05 24.7 0.0 2.6e-05 23.5 0.0 1.7 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 gi|261402254|ref|YP_003246478.1| - 0.0007 19.4 0.5 0.0064 16.3 0.5 2.4 1 1 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|261402254|ref|YP_003246478.1| - 0.0028 17.2 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|261402254|ref|YP_003246478.1| - 0.0057 16.7 0.3 0.037 14.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family DHHA1 PF02272.19 gi|261402256|ref|YP_003246480.1| - 6.1e-16 59.1 0.9 6.1e-16 59.1 0.9 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|261402256|ref|YP_003246480.1| - 0.034 14.4 0.0 0.076 13.3 0.0 1.5 1 0 0 1 1 1 0 DHH family NRDD PF13597.6 gi|261402257|ref|YP_003246481.1| - 8.7e-174 579.4 0.3 1.3e-173 578.8 0.3 1.2 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase ATP-cone PF03477.16 gi|261402257|ref|YP_003246481.1| - 6.6e-20 71.5 4.8 5.5e-10 39.7 0.2 2.7 2 0 0 2 2 2 2 ATP cone domain YtzH PF14165.6 gi|261402257|ref|YP_003246481.1| - 0.11 13.0 1.3 0.47 10.9 0.1 2.6 3 0 0 3 3 3 0 YtzH-like protein TackOD1 PF18551.1 gi|261402257|ref|YP_003246481.1| - 0.18 11.4 0.5 0.44 10.2 0.0 1.8 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Class_IIIsignal PF04021.12 gi|261402258|ref|YP_003246482.1| - 1.2e-10 41.0 0.6 1.8e-10 40.4 0.6 1.3 1 0 0 1 1 1 1 Class III signal peptide DUF3333 PF11812.8 gi|261402258|ref|YP_003246482.1| - 0.0029 17.8 0.3 0.0041 17.3 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3333) DUF515 PF04415.12 gi|261402260|ref|YP_003246484.1| - 5.3e-116 387.7 35.7 4.8e-87 292.2 27.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF515) GA PF01468.17 gi|261402260|ref|YP_003246484.1| - 0.00012 22.2 4.1 0.00012 22.2 4.1 3.0 3 0 0 3 3 3 2 GA module Class_IIIsignal PF04021.12 gi|261402261|ref|YP_003246485.1| - 1.3e-07 31.3 0.5 1.3e-07 31.3 0.5 1.7 2 0 0 2 2 2 1 Class III signal peptide Arc_PepC PF06819.11 gi|261402262|ref|YP_003246486.1| - 1.5e-33 115.3 9.9 1.5e-33 115.3 9.9 1.6 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminal Domain Peptidase_A24 PF01478.18 gi|261402262|ref|YP_003246486.1| - 1.6e-11 44.6 11.1 1.6e-11 44.6 11.1 2.9 3 1 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|261402262|ref|YP_003246486.1| - 0.00036 21.0 0.3 0.00036 21.0 0.3 2.3 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II zf-like PF04071.12 gi|261402263|ref|YP_003246487.1| - 4.2e-28 97.1 8.0 6.3e-28 96.5 8.0 1.2 1 0 0 1 1 1 1 Cysteine-rich small domain AIG1 PF04548.16 gi|261402263|ref|YP_003246487.1| - 0.046 13.0 0.0 0.1 11.9 0.0 1.5 2 0 0 2 2 2 0 AIG1 family Zf_RING PF16744.5 gi|261402263|ref|YP_003246487.1| - 0.53 10.4 8.2 0.85 9.8 8.2 1.3 1 0 0 1 1 1 0 KIAA1045 RING finger HD PF01966.22 gi|261402264|ref|YP_003246488.1| - 8.9e-16 58.2 1.5 1.8e-15 57.2 1.5 1.5 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|261402264|ref|YP_003246488.1| - 1.7e-06 27.2 0.3 1.6e-05 24.0 0.1 2.3 2 1 0 2 2 2 1 Putative helicase HD_2 PF12917.7 gi|261402264|ref|YP_003246488.1| - 0.00045 20.0 0.1 0.0011 18.8 0.1 1.6 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme DUF166 PF02593.14 gi|261402265|ref|YP_003246489.1| - 3.1e-57 193.6 0.2 3.8e-57 193.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function Ribonuc_P_40 PF08584.11 gi|261402265|ref|YP_003246489.1| - 0.051 12.9 0.0 0.07 12.4 0.0 1.1 1 0 0 1 1 1 0 Ribonuclease P 40kDa (Rpp40) subunit DNA_primase_S PF01896.19 gi|261402266|ref|YP_003246490.1| - 1.3e-11 44.9 2.5 4.1e-11 43.2 2.5 1.9 1 1 0 1 1 1 1 DNA primase small subunit D5_N PF08706.11 gi|261402266|ref|YP_003246490.1| - 0.011 16.0 0.6 0.018 15.3 0.6 1.4 1 0 0 1 1 1 0 D5 N terminal like DUF4272 PF14094.6 gi|261402268|ref|YP_003246492.1| - 0.01 15.1 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4272) Hydantoinase_A PF01968.18 gi|261402269|ref|YP_003246493.1| - 1.3e-44 152.6 0.0 1e-43 149.7 0.0 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase MutL PF13941.6 gi|261402269|ref|YP_003246493.1| - 0.01 14.5 0.0 0.79 8.2 0.0 2.2 2 0 0 2 2 2 0 MutL protein StbA PF06406.11 gi|261402269|ref|YP_003246493.1| - 0.028 13.7 2.2 1.7 7.8 0.0 2.7 2 1 0 2 2 2 0 StbA protein Hydant_A_N PF05378.13 gi|261402269|ref|YP_003246493.1| - 0.074 12.7 2.7 1.9 8.2 0.0 3.0 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|261402269|ref|YP_003246493.1| - 0.3 11.5 2.5 2 8.9 0.1 2.8 2 2 0 2 2 2 0 Cell division protein FtsA Radical_SAM PF04055.21 gi|261402270|ref|YP_003246494.1| - 1.9e-15 57.7 13.0 2.9e-14 53.8 1.7 3.8 3 2 0 3 3 3 3 Radical SAM superfamily DUF512 PF04459.12 gi|261402270|ref|YP_003246494.1| - 0.023 14.0 0.1 0.15 11.4 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF512) MCR_beta PF02241.18 gi|261402271|ref|YP_003246495.1| - 4.8e-143 475.1 4.9 6.7e-143 474.7 4.9 1.2 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|261402271|ref|YP_003246495.1| - 4.2e-81 270.9 1.6 9.1e-81 269.8 1.6 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|261402272|ref|YP_003246496.1| - 1.5e-59 199.9 0.0 1.7e-59 199.8 0.0 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D MCR_C PF04609.12 gi|261402273|ref|YP_003246497.1| - 2e-09 37.0 0.6 4e-09 36.0 0.6 1.4 1 1 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C MCR_gamma PF02240.16 gi|261402274|ref|YP_003246498.1| - 1.1e-131 437.5 0.5 1.2e-131 437.4 0.5 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|261402275|ref|YP_003246499.1| - 1.3e-153 510.0 0.0 1.7e-153 509.6 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|261402275|ref|YP_003246499.1| - 3.4e-71 237.6 3.9 7.1e-71 236.6 3.9 1.6 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MtrE PF04206.12 gi|261402276|ref|YP_003246500.1| - 1.8e-125 417.7 14.6 2e-125 417.6 14.6 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit E MtrD PF04207.12 gi|261402277|ref|YP_003246501.1| - 1.5e-92 309.3 27.4 1.8e-92 309.0 27.4 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D MtrC PF04211.13 gi|261402278|ref|YP_003246502.1| - 5.6e-97 324.0 21.3 6.4e-97 323.8 21.3 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit C Myc_target_1 PF15179.6 gi|261402278|ref|YP_003246502.1| - 0.18 11.7 1.0 0.98 9.3 0.0 2.1 2 0 0 2 2 2 0 Myc target protein 1 DUF2456 PF10445.9 gi|261402278|ref|YP_003246502.1| - 2.7 8.1 7.5 6.4 6.9 1.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2456) Phage_holin_3_1 PF05106.12 gi|261402278|ref|YP_003246502.1| - 2.7 8.5 11.9 0.16 12.4 0.7 3.5 1 1 1 2 2 2 0 Phage holin family (Lysis protein S) Vpu PF00558.19 gi|261402278|ref|YP_003246502.1| - 3.9 7.3 5.5 0.63 9.9 0.9 2.0 2 0 0 2 2 2 0 Vpu protein MtrB PF05440.12 gi|261402279|ref|YP_003246503.1| - 1.1e-30 105.9 0.0 1.3e-30 105.6 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase subunit B MtrA PF04208.14 gi|261402280|ref|YP_003246504.1| - 2.1e-84 281.4 0.9 2.6e-84 281.1 0.9 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit A MtrF PF09472.10 gi|261402281|ref|YP_003246505.1| - 1.7e-24 85.0 0.2 1.9e-24 84.8 0.2 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) MtrG PF04210.13 gi|261402282|ref|YP_003246506.1| - 3.7e-28 97.2 0.1 4.5e-28 96.9 0.1 1.1 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit G HalX PF08663.10 gi|261402282|ref|YP_003246506.1| - 0.024 14.9 0.1 0.03 14.6 0.1 1.2 1 0 0 1 1 1 0 HalX domain DUF2951 PF11166.8 gi|261402282|ref|YP_003246506.1| - 0.029 14.6 0.1 0.036 14.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) DUF2605 PF10792.9 gi|261402282|ref|YP_003246506.1| - 0.063 13.2 0.0 0.093 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2605) TraE PF05309.11 gi|261402282|ref|YP_003246506.1| - 0.13 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 TraE protein MtrH PF02007.18 gi|261402283|ref|YP_003246507.1| - 1.6e-159 529.8 0.7 1.8e-159 529.6 0.7 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit DUF2092 PF09865.9 gi|261402283|ref|YP_003246507.1| - 0.12 11.8 0.0 0.55 9.6 0.0 1.8 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2092) DUF723 PF05265.13 gi|261402284|ref|YP_003246508.1| - 0.075 13.0 0.2 13 5.8 0.1 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF723) Chlorophyllase2 PF12740.7 gi|261402284|ref|YP_003246508.1| - 0.078 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Bac_luciferase PF00296.20 gi|261402285|ref|YP_003246509.1| - 5.7e-71 239.5 0.0 6.8e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase FlgM PF04316.13 gi|261402285|ref|YP_003246509.1| - 0.014 15.7 0.1 0.036 14.4 0.1 1.7 1 0 0 1 1 1 0 Anti-sigma-28 factor, FlgM Arc PF03869.14 gi|261402285|ref|YP_003246509.1| - 0.14 12.0 0.0 10 6.0 0.0 2.4 2 0 0 2 2 2 0 Arc-like DNA binding domain Pkinase PF00069.25 gi|261402286|ref|YP_003246510.1| - 2.5e-07 30.4 0.5 3.5e-07 29.8 0.5 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|261402286|ref|YP_003246510.1| - 5.2e-05 22.6 0.0 5.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase RIO1 PF01163.22 gi|261402286|ref|YP_003246510.1| - 0.00052 19.7 0.0 0.00087 18.9 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|261402286|ref|YP_003246510.1| - 0.057 12.8 0.0 0.1 11.9 0.0 1.8 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Choline_kinase PF01633.20 gi|261402286|ref|YP_003246510.1| - 0.097 12.2 0.0 0.29 10.7 0.0 1.8 2 0 0 2 2 2 0 Choline/ethanolamine kinase FTA2 PF13095.6 gi|261402286|ref|YP_003246510.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 PAC2 PF09754.9 gi|261402287|ref|YP_003246511.1| - 4e-47 161.0 0.0 4.6e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family 5_3_exonuc PF01367.20 gi|261402287|ref|YP_003246511.1| - 0.018 15.6 0.4 4.7 7.9 0.1 2.9 3 0 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|261402287|ref|YP_003246511.1| - 0.024 14.7 0.7 2.5 8.3 0.0 3.4 3 0 0 3 3 3 0 Helix-hairpin-helix motif Pyr_redox PF00070.27 gi|261402287|ref|YP_003246511.1| - 0.11 13.1 0.1 8.8 7.0 0.0 2.4 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF825 PF05695.12 gi|261402287|ref|YP_003246511.1| - 0.29 8.2 0.0 0.39 7.8 0.0 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF825) EcsC PF12787.7 gi|261402287|ref|YP_003246511.1| - 3.5 7.2 4.7 12 5.5 0.1 2.9 3 0 0 3 3 3 0 EcsC protein family Pribosyltran PF00156.27 gi|261402288|ref|YP_003246512.1| - 5.7e-16 58.4 3.8 7.2e-16 58.1 3.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|261402288|ref|YP_003246512.1| - 0.00046 19.7 0.0 0.0007 19.1 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PfkB PF00294.24 gi|261402288|ref|YP_003246512.1| - 0.0097 15.2 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PRTase_2 PF15609.6 gi|261402288|ref|YP_003246512.1| - 0.018 14.6 0.1 0.092 12.2 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase PDZ PF00595.24 gi|261402288|ref|YP_003246512.1| - 0.07 13.5 1.3 0.13 12.7 0.3 1.9 2 0 0 2 2 2 0 PDZ domain Asn_synthase PF00733.21 gi|261402289|ref|YP_003246513.1| - 8.6e-58 196.7 0.1 4.4e-30 105.5 0.0 2.1 1 1 1 2 2 2 2 Asparagine synthase GATase_6 PF13522.6 gi|261402289|ref|YP_003246513.1| - 7e-35 120.2 0.0 1.2e-34 119.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|261402289|ref|YP_003246513.1| - 1.6e-34 118.4 0.0 4.2e-34 117.1 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|261402289|ref|YP_003246513.1| - 0.0017 17.9 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein HTH_38 PF13936.6 gi|261402290|ref|YP_003246514.1| - 1.8e-06 27.6 1.5 4.6e-06 26.3 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|261402290|ref|YP_003246514.1| - 1.1e-05 25.0 0.1 2.5e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|261402290|ref|YP_003246514.1| - 0.00021 20.9 1.5 0.00026 20.6 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|261402290|ref|YP_003246514.1| - 0.00026 20.9 0.9 0.00096 19.0 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|261402290|ref|YP_003246514.1| - 0.00035 20.1 0.0 0.0013 18.3 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|261402290|ref|YP_003246514.1| - 0.0004 20.8 9.6 0.002 18.6 8.5 2.8 2 1 0 2 2 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|261402290|ref|YP_003246514.1| - 0.00066 19.8 0.1 0.0015 18.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|261402290|ref|YP_003246514.1| - 0.00098 19.1 0.0 0.0024 17.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_3 PF01381.22 gi|261402290|ref|YP_003246514.1| - 0.0015 18.5 0.5 0.0069 16.4 0.5 2.2 1 0 0 1 1 1 1 Helix-turn-helix Cluap1 PF10234.9 gi|261402290|ref|YP_003246514.1| - 0.0017 17.8 7.9 0.0019 17.6 7.9 1.1 1 0 0 1 1 1 1 Clusterin-associated protein-1 Terminase_5 PF06056.12 gi|261402290|ref|YP_003246514.1| - 0.0028 17.5 0.2 0.0086 15.9 0.0 1.9 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) HIGH_NTase1 PF05636.11 gi|261402290|ref|YP_003246514.1| - 0.003 16.8 0.8 0.0038 16.5 0.8 1.1 1 0 0 1 1 1 1 HIGH Nucleotidyl Transferase HTH_31 PF13560.6 gi|261402290|ref|YP_003246514.1| - 0.005 17.2 0.2 0.014 15.7 0.2 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain TnsD PF15978.5 gi|261402290|ref|YP_003246514.1| - 0.0052 15.8 1.0 0.0087 15.1 1.0 1.4 1 1 0 1 1 1 1 Tn7-like transposition protein D HTH_19 PF12844.7 gi|261402290|ref|YP_003246514.1| - 0.0059 16.6 1.2 0.0059 16.6 1.2 2.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|261402290|ref|YP_003246514.1| - 0.0062 16.3 1.1 0.019 14.7 0.1 2.4 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain GerE PF00196.19 gi|261402290|ref|YP_003246514.1| - 0.0063 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|261402290|ref|YP_003246514.1| - 0.0068 15.9 0.3 0.0068 15.9 0.3 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|261402290|ref|YP_003246514.1| - 0.018 15.1 0.0 0.045 13.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|261402290|ref|YP_003246514.1| - 0.021 14.7 5.7 0.18 11.7 0.1 2.2 1 1 1 2 2 2 0 ECF sigma factor DUF3489 PF11994.8 gi|261402290|ref|YP_003246514.1| - 0.025 14.6 0.3 0.053 13.6 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_5 PF01022.20 gi|261402290|ref|YP_003246514.1| - 0.05 13.5 0.0 0.17 11.8 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|261402290|ref|YP_003246514.1| - 0.06 13.2 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.15 gi|261402290|ref|YP_003246514.1| - 0.09 12.9 0.1 0.3 11.2 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_1 PF01527.20 gi|261402290|ref|YP_003246514.1| - 0.14 12.5 5.1 3.4 8.1 5.1 2.3 1 1 0 1 1 1 0 Transposase HTH_17 PF12728.7 gi|261402290|ref|YP_003246514.1| - 0.23 11.7 4.8 0.19 12.0 0.7 2.9 2 1 0 2 2 1 0 Helix-turn-helix domain Med30 PF11315.8 gi|261402290|ref|YP_003246514.1| - 0.35 11.1 6.9 0.46 10.7 6.9 1.2 1 0 0 1 1 1 0 Mediator complex subunit 30 Laminin_II PF06009.12 gi|261402290|ref|YP_003246514.1| - 0.38 10.7 7.3 2.2 8.3 7.3 1.9 1 1 0 1 1 1 0 Laminin Domain II DUF948 PF06103.11 gi|261402290|ref|YP_003246514.1| - 1.1 9.5 5.1 1.4e+02 2.8 5.1 2.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) AAA_23 PF13476.6 gi|261402290|ref|YP_003246514.1| - 1.4 9.4 10.0 1.6 9.2 10.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2203 PF09969.9 gi|261402290|ref|YP_003246514.1| - 1.9 9.2 7.4 1.7 9.4 5.5 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) APG6_N PF17675.1 gi|261402290|ref|YP_003246514.1| - 3 8.4 15.9 1.2 9.7 13.3 1.7 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF16 PF01519.16 gi|261402290|ref|YP_003246514.1| - 3 8.4 9.9 32 5.1 10.0 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 Thiamine_BP PF01910.17 gi|261402291|ref|YP_003246515.1| - 1.2e-28 98.9 0.3 1.3e-28 98.7 0.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Ykof PF07615.11 gi|261402291|ref|YP_003246515.1| - 3.6e-05 24.2 0.0 4.2e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 YKOF-related Family RuvA_C PF07499.13 gi|261402291|ref|YP_003246515.1| - 0.013 16.0 0.6 0.15 12.5 0.0 2.4 3 0 0 3 3 3 0 RuvA, C-terminal domain DUF1424 PF07232.11 gi|261402291|ref|YP_003246515.1| - 0.051 12.6 0.0 0.06 12.3 0.0 1.0 1 0 0 1 1 1 0 Putative rep protein (DUF1424) DUF3510 PF12022.8 gi|261402291|ref|YP_003246515.1| - 0.054 13.9 0.1 0.067 13.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) Rib_5-P_isom_A PF06026.14 gi|261402292|ref|YP_003246516.1| - 1.7e-60 203.6 0.1 2.1e-60 203.3 0.1 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|261402292|ref|YP_003246516.1| - 9.6e-09 35.4 0.0 1.7e-06 28.1 0.0 2.3 1 1 0 1 1 1 1 DeoR C terminal sensor domain DUF1297 PF06973.12 gi|261402293|ref|YP_003246517.1| - 8.5e-87 289.6 0.0 1.2e-86 289.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|261402293|ref|YP_003246517.1| - 8e-49 164.7 0.0 1.2e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) RNase_HII PF01351.18 gi|261402294|ref|YP_003246518.1| - 8.5e-63 211.8 0.7 1e-62 211.5 0.7 1.0 1 0 0 1 1 1 1 Ribonuclease HII NRDD PF13597.6 gi|261402294|ref|YP_003246518.1| - 0.011 14.6 0.3 0.014 14.2 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase KaiA PF07688.12 gi|261402294|ref|YP_003246518.1| - 0.061 13.5 1.3 1.6 8.9 0.6 2.4 2 1 0 2 2 2 0 KaiA C-terminal domain CNOT11 PF10155.9 gi|261402294|ref|YP_003246518.1| - 0.063 13.4 0.9 0.11 12.7 0.9 1.4 1 0 0 1 1 1 0 CCR4-NOT transcription complex subunit 11 GCD14 PF08704.10 gi|261402295|ref|YP_003246519.1| - 1.8e-30 106.4 0.1 1.4e-27 97.0 0.0 3.0 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|261402295|ref|YP_003246519.1| - 4.2e-07 29.9 0.0 0.00075 19.3 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Ubie_methyltran PF01209.18 gi|261402295|ref|YP_003246519.1| - 3.1e-06 26.7 0.1 7.8e-06 25.4 0.0 1.6 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|261402295|ref|YP_003246519.1| - 7.6e-06 25.8 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|261402295|ref|YP_003246519.1| - 3.3e-05 23.1 0.1 8.3e-05 21.8 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|261402295|ref|YP_003246519.1| - 4.3e-05 24.1 0.0 0.00018 22.2 0.0 2.2 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|261402295|ref|YP_003246519.1| - 0.0031 18.2 0.1 0.0073 17.0 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|261402295|ref|YP_003246519.1| - 0.0062 17.6 0.0 0.015 16.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|261402295|ref|YP_003246519.1| - 0.0074 15.7 0.3 0.033 13.6 0.1 1.9 1 1 1 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|261402295|ref|YP_003246519.1| - 0.0076 16.9 0.1 0.029 15.0 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261402295|ref|YP_003246519.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|261402295|ref|YP_003246519.1| - 0.011 15.9 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|261402295|ref|YP_003246519.1| - 0.022 14.8 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261402295|ref|YP_003246519.1| - 0.027 14.4 0.1 0.084 12.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain ProRS-C_2 PF09181.10 gi|261402296|ref|YP_003246520.1| - 2.2e-27 95.0 4.1 2.2e-27 95.0 4.1 2.6 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.25 gi|261402296|ref|YP_003246520.1| - 6.2e-26 91.4 0.2 1.5e-25 90.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|261402296|ref|YP_003246520.1| - 3e-20 72.1 1.0 7.6e-20 70.9 1.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain P22_AR_C PF10548.9 gi|261402296|ref|YP_003246520.1| - 0.036 14.2 0.1 0.16 12.1 0.0 2.1 2 0 0 2 2 2 0 P22AR C-terminal domain TIR_2 PF13676.6 gi|261402296|ref|YP_003246520.1| - 0.053 14.1 0.0 0.2 12.3 0.0 2.0 1 0 0 1 1 1 0 TIR domain Zincin_1 PF06262.11 gi|261402296|ref|YP_003246520.1| - 0.1 12.7 0.1 0.58 10.3 0.0 2.2 2 0 0 2 2 2 0 Zincin-like metallopeptidase LEDGF PF11467.8 gi|261402296|ref|YP_003246520.1| - 0.27 10.9 6.1 1.1 8.9 0.1 3.2 3 0 0 3 3 3 0 Lens epithelium-derived growth factor (LEDGF) Importin_rep_6 PF18829.1 gi|261402296|ref|YP_003246520.1| - 9.5 6.4 8.4 0.45 10.7 0.6 2.6 3 0 0 3 3 3 0 Importin repeat 6 Proteasome PF00227.26 gi|261402297|ref|YP_003246521.1| - 2.8e-60 203.1 0.2 4.3e-60 202.5 0.2 1.3 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.8 gi|261402298|ref|YP_003246522.1| - 1.5e-27 96.0 0.0 3.1e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain KH_7 PF17214.3 gi|261402298|ref|YP_003246522.1| - 1.7e-27 95.1 15.7 1e-26 92.7 3.9 4.0 4 0 0 4 4 4 2 KH domain RMMBL PF07521.12 gi|261402298|ref|YP_003246522.1| - 5.9e-16 58.2 0.0 2.8e-15 56.0 0.0 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|261402298|ref|YP_003246522.1| - 2.6e-13 50.4 0.6 6.3e-13 49.2 0.6 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|261402298|ref|YP_003246522.1| - 1.8e-12 47.1 0.0 3e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|261402298|ref|YP_003246522.1| - 1.6e-10 40.9 0.1 3.7e-10 39.6 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|261402298|ref|YP_003246522.1| - 2.7e-05 23.9 1.4 2.7e-05 23.9 1.4 3.0 1 1 1 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|261402298|ref|YP_003246522.1| - 0.0003 20.7 0.0 0.00098 19.0 0.0 1.9 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|261402298|ref|YP_003246522.1| - 0.0016 18.3 0.1 0.0067 16.3 0.1 2.1 1 0 0 1 1 1 1 KH domain DUF2870 PF11069.8 gi|261402298|ref|YP_003246522.1| - 0.037 14.4 0.2 0.16 12.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2870) MOEP19 PF16005.5 gi|261402298|ref|YP_003246522.1| - 0.08 13.0 0.0 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 KH-like RNA-binding domain TatD_DNase PF01026.21 gi|261402299|ref|YP_003246523.1| - 1.5e-21 76.9 0.6 1.9e-21 76.6 0.6 1.1 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|261402299|ref|YP_003246523.1| - 0.0029 17.4 0.0 0.016 15.0 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase ANF_receptor PF01094.28 gi|261402299|ref|YP_003246523.1| - 0.021 13.9 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region DUF4862 PF16154.5 gi|261402299|ref|YP_003246523.1| - 0.039 13.3 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4862) Amidohydro_1 PF01979.20 gi|261402299|ref|YP_003246523.1| - 0.054 12.8 2.4 0.17 11.1 2.4 1.9 1 1 0 1 1 1 0 Amidohydrolase family Nitroreductase PF00881.24 gi|261402300|ref|YP_003246524.1| - 3.5e-31 108.5 0.0 4.1e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|261402300|ref|YP_003246524.1| - 0.00013 21.6 0.1 0.013 15.0 0.0 2.2 1 1 0 2 2 2 2 Putative TM nitroreductase Trm56 PF01994.16 gi|261402301|ref|YP_003246525.1| - 9.1e-53 177.2 0.3 1.2e-52 176.8 0.3 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 SPOUT_MTase_2 PF14419.6 gi|261402301|ref|YP_003246525.1| - 8.9e-06 25.2 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP DUF1694 PF07997.11 gi|261402301|ref|YP_003246525.1| - 0.0096 16.0 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1694) AA_kinase PF00696.28 gi|261402301|ref|YP_003246525.1| - 0.01 15.5 0.1 3 7.4 0.0 2.1 2 0 0 2 2 2 0 Amino acid kinase family F420_ligase PF01996.16 gi|261402301|ref|YP_003246525.1| - 0.041 13.2 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase DUF531 PF04407.12 gi|261402301|ref|YP_003246525.1| - 0.12 12.4 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF531) DUF1269 PF06897.12 gi|261402302|ref|YP_003246526.1| - 0.0018 18.5 1.5 0.0021 18.3 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1269) SPC12 PF06645.13 gi|261402302|ref|YP_003246526.1| - 0.53 10.4 2.5 2.8 8.1 2.6 1.8 1 1 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF3172 PF11371.8 gi|261402302|ref|YP_003246526.1| - 4.7 6.9 5.0 3.7 7.3 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3172) TGT PF01702.18 gi|261402303|ref|YP_003246527.1| - 1.5e-85 287.4 0.0 2.2e-85 286.9 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|261402303|ref|YP_003246527.1| - 6.7e-16 58.0 0.1 2.7e-15 56.1 0.1 2.1 2 0 0 2 2 2 1 PUA domain TGT_C2 PF14810.6 gi|261402303|ref|YP_003246527.1| - 4.1e-15 55.7 0.0 1.1e-14 54.3 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase UPF0113 PF03657.13 gi|261402303|ref|YP_003246527.1| - 3.6e-05 23.9 0.2 0.0086 16.3 0.0 2.6 2 0 0 2 2 2 1 UPF0113 PUA domain TGT_C1 PF14809.6 gi|261402303|ref|YP_003246527.1| - 0.00012 22.3 3.8 0.02 15.2 0.3 2.5 1 1 1 2 2 2 2 C1 domain of tRNA-guanine transglycosylase dimerisation DUF5591 PF17884.1 gi|261402303|ref|YP_003246527.1| - 0.0035 17.2 0.2 0.0073 16.2 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PUA_3 PF17785.1 gi|261402303|ref|YP_003246527.1| - 0.046 13.5 0.7 1.4 8.7 0.0 2.9 3 0 0 3 3 3 0 PUA-like domain RNA_pol_Rpb5_C PF01191.19 gi|261402303|ref|YP_003246527.1| - 0.071 13.0 0.8 0.88 9.5 0.0 3.3 4 0 0 4 4 4 0 RNA polymerase Rpb5, C-terminal domain Kin17_mid PF10357.9 gi|261402303|ref|YP_003246527.1| - 6.4 6.7 6.6 0.44 10.5 1.0 1.9 2 0 0 2 2 2 0 Domain of Kin17 curved DNA-binding protein DUF4040 PF13244.6 gi|261402304|ref|YP_003246528.1| - 1.2e-17 63.8 4.2 1.4e-17 63.5 4.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) Caps_synth_CapC PF14102.6 gi|261402304|ref|YP_003246528.1| - 0.0053 17.2 1.5 0.0067 16.8 1.5 1.0 1 0 0 1 1 1 1 Capsule biosynthesis CapC UPF0020 PF01170.18 gi|261402305|ref|YP_003246529.1| - 3e-63 213.1 0.0 3.7e-63 212.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|261402305|ref|YP_003246529.1| - 9.5e-27 93.9 2.9 9.5e-27 93.9 2.9 1.7 2 0 0 2 2 2 1 THUMP domain Methyltransf_31 PF13847.6 gi|261402305|ref|YP_003246529.1| - 3.4e-06 26.9 0.1 3.5e-05 23.6 0.1 2.1 2 0 0 2 2 2 1 Methyltransferase domain N6_Mtase PF02384.16 gi|261402305|ref|YP_003246529.1| - 3.5e-05 23.2 0.0 0.0002 20.8 0.0 2.2 1 1 0 1 1 1 1 N-6 DNA Methylase N6_N4_Mtase PF01555.18 gi|261402305|ref|YP_003246529.1| - 7.6e-05 22.5 0.0 0.0011 18.7 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Eco57I PF07669.11 gi|261402305|ref|YP_003246529.1| - 0.00015 22.2 0.1 0.00054 20.4 0.0 1.9 2 0 0 2 2 2 1 Eco57I restriction-modification methylase MTS PF05175.14 gi|261402305|ref|YP_003246529.1| - 0.0003 20.4 0.0 0.00096 18.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|261402305|ref|YP_003246529.1| - 0.00041 20.0 0.0 0.0015 18.1 0.0 2.0 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase AviRa PF11599.8 gi|261402305|ref|YP_003246529.1| - 0.0011 18.4 0.0 0.031 13.7 0.0 2.5 2 1 1 3 3 3 1 RRNA methyltransferase AviRa Methyltransf_25 PF13649.6 gi|261402305|ref|YP_003246529.1| - 0.011 16.4 0.0 0.059 14.1 0.0 2.3 3 1 0 3 3 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261402305|ref|YP_003246529.1| - 0.014 15.4 0.2 0.042 13.8 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|261402305|ref|YP_003246529.1| - 0.035 13.8 0.0 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF63 PF01889.17 gi|261402306|ref|YP_003246530.1| - 3.2e-81 273.5 21.1 3.6e-81 273.3 21.1 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF2070 PF09843.9 gi|261402306|ref|YP_003246530.1| - 0.49 8.6 13.0 0.76 8.0 13.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1761 PF08570.10 gi|261402306|ref|YP_003246530.1| - 2.1 8.6 8.6 2.4 8.5 4.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) TauE PF01925.19 gi|261402307|ref|YP_003246531.1| - 1.2e-45 156.0 27.7 1.5e-45 155.7 27.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1689 PF07954.11 gi|261402307|ref|YP_003246531.1| - 0.33 11.3 0.6 1.1 9.7 0.2 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1689) Ceramidase PF05875.12 gi|261402307|ref|YP_003246531.1| - 0.9 8.9 5.3 0.14 11.6 1.4 1.5 2 0 0 2 2 2 0 Ceramidase cobW PF02492.19 gi|261402308|ref|YP_003246532.1| - 2e-31 109.0 2.2 2.5e-31 108.6 2.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|261402308|ref|YP_003246532.1| - 4.7e-08 32.3 0.9 2.8e-05 23.2 0.3 2.2 2 1 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|261402308|ref|YP_003246532.1| - 6.7e-05 22.6 0.2 0.00055 19.6 0.2 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.14 gi|261402308|ref|YP_003246532.1| - 0.00019 21.3 0.6 0.0011 18.8 0.3 2.3 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|261402308|ref|YP_003246532.1| - 0.00021 21.3 0.5 0.081 12.8 0.2 2.2 2 0 0 2 2 2 2 RsgA GTPase ATP_bind_1 PF03029.17 gi|261402308|ref|YP_003246532.1| - 0.0071 16.1 0.2 3.7 7.2 0.1 2.1 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|261402308|ref|YP_003246532.1| - 0.0088 16.0 0.0 0.03 14.2 0.0 1.9 2 0 0 2 2 2 1 NTPase ATPase_2 PF01637.18 gi|261402308|ref|YP_003246532.1| - 0.049 13.5 0.3 0.074 12.9 0.3 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|261402308|ref|YP_003246532.1| - 0.051 13.6 0.1 0.094 12.7 0.1 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TrwB_AAD_bind PF10412.9 gi|261402308|ref|YP_003246532.1| - 0.056 12.4 0.0 0.084 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1_Xtn PF16897.5 gi|261402308|ref|YP_003246532.1| - 0.075 13.1 1.9 0.23 11.5 0.2 2.2 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain AAA_7 PF12775.7 gi|261402308|ref|YP_003246532.1| - 0.081 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Arf PF00025.21 gi|261402308|ref|YP_003246532.1| - 0.1 12.0 0.7 0.24 10.8 0.1 1.8 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_22 PF13401.6 gi|261402308|ref|YP_003246532.1| - 0.11 12.7 0.0 0.29 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain IMPDH PF00478.25 gi|261402308|ref|YP_003246532.1| - 0.12 11.3 2.0 0.47 9.4 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain KH_1 PF00013.29 gi|261402309|ref|YP_003246533.1| - 1.2e-17 63.5 4.8 2.8e-10 39.9 0.5 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|261402309|ref|YP_003246533.1| - 2e-06 27.5 8.8 9.7e-05 22.1 2.6 2.6 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|261402309|ref|YP_003246533.1| - 0.0001 22.3 0.1 0.00026 21.0 0.0 1.7 2 0 0 2 2 2 1 Krr1 KH1 domain KH_4 PF13083.6 gi|261402309|ref|YP_003246533.1| - 0.015 15.2 7.0 0.16 11.9 0.6 3.0 2 1 1 3 3 3 0 KH domain vWA-TerF-like PF10138.9 gi|261402309|ref|YP_003246533.1| - 0.023 14.8 0.2 0.055 13.6 0.0 1.7 2 0 0 2 2 2 0 vWA found in TerF C terminus KH_5 PF13184.6 gi|261402309|ref|YP_003246533.1| - 0.18 11.9 3.9 0.14 12.2 0.8 2.3 2 0 0 2 2 2 0 NusA-like KH domain RIO1 PF01163.22 gi|261402310|ref|YP_003246534.1| - 7e-60 201.9 0.5 7e-60 201.9 0.5 1.6 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|261402310|ref|YP_003246534.1| - 0.00034 20.6 0.0 0.00063 19.7 0.0 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|261402310|ref|YP_003246534.1| - 0.0033 16.3 0.1 0.0043 15.9 0.1 1.3 1 1 0 1 1 1 1 Fungal protein kinase Pkinase PF00069.25 gi|261402310|ref|YP_003246534.1| - 0.0056 16.1 1.0 0.0075 15.7 0.3 1.7 1 1 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.20 gi|261402310|ref|YP_003246534.1| - 0.026 14.1 1.6 0.093 12.3 0.9 2.2 1 1 0 1 1 1 0 Choline/ethanolamine kinase Pkinase_Tyr PF07714.17 gi|261402310|ref|YP_003246534.1| - 0.065 12.5 0.3 0.17 11.1 0.3 1.8 1 1 0 1 1 1 0 Protein tyrosine kinase eIF-1a PF01176.19 gi|261402311|ref|YP_003246535.1| - 1.6e-22 79.1 2.3 2.4e-22 78.5 1.5 1.7 2 0 0 2 2 2 1 Translation initiation factor 1A / IF-1 Radical_SAM PF04055.21 gi|261402312|ref|YP_003246536.1| - 2.8e-13 50.6 0.1 6.3e-13 49.4 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily DUF1335 PF07056.11 gi|261402312|ref|YP_003246536.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1335) Mem_trans PF03547.18 gi|261402313|ref|YP_003246537.1| - 2.4e-36 125.0 33.0 6.4e-19 67.6 11.7 2.0 2 0 0 2 2 2 2 Membrane transport protein CTP_transf_like PF01467.26 gi|261402314|ref|YP_003246538.1| - 4.1e-18 66.0 0.1 4.8e-18 65.7 0.1 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like ABC_transp_aux PF09822.9 gi|261402314|ref|YP_003246538.1| - 0.0041 16.6 0.1 0.0051 16.3 0.1 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system FAD_syn PF06574.12 gi|261402314|ref|YP_003246538.1| - 0.009 15.9 1.5 0.017 15.0 0.7 2.0 2 1 0 2 2 2 1 FAD synthetase PTS_IIB PF02302.17 gi|261402314|ref|YP_003246538.1| - 0.012 16.3 0.9 0.022 15.4 0.9 1.4 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit CRISPR_Cas2 PF09827.9 gi|261402314|ref|YP_003246538.1| - 0.044 14.0 0.2 6.1 7.1 0.0 2.4 2 1 0 2 2 2 0 CRISPR associated protein Cas2 Nuc_deoxyri_tr3 PF11071.8 gi|261402314|ref|YP_003246538.1| - 0.045 13.8 0.3 11 6.1 0.1 2.2 1 1 0 2 2 2 0 Nucleoside 2-deoxyribosyltransferase YtoQ RrnaAD PF00398.20 gi|261402315|ref|YP_003246539.1| - 7.4e-54 182.6 4.2 8.5e-54 182.4 4.2 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|261402315|ref|YP_003246539.1| - 1.2e-06 29.1 0.0 2.6e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|261402315|ref|YP_003246539.1| - 2.5e-05 23.9 0.0 4.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|261402315|ref|YP_003246539.1| - 8.6e-05 23.1 0.0 0.00019 22.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|261402315|ref|YP_003246539.1| - 0.00045 19.7 0.1 0.00085 18.8 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase NodS PF05401.11 gi|261402315|ref|YP_003246539.1| - 0.00068 19.3 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_23 PF13489.6 gi|261402315|ref|YP_003246539.1| - 0.0011 18.8 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|261402315|ref|YP_003246539.1| - 0.0016 17.6 0.1 0.003 16.7 0.1 1.4 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.6 gi|261402315|ref|YP_003246539.1| - 0.0043 17.0 0.1 0.0086 16.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF5471 PF17565.2 gi|261402315|ref|YP_003246539.1| - 0.02 15.2 0.4 0.69 10.2 0.0 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5471) Methyltransf_12 PF08242.12 gi|261402315|ref|YP_003246539.1| - 0.034 14.9 0.0 0.069 13.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|261402315|ref|YP_003246539.1| - 0.034 13.9 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF4760 PF15956.5 gi|261402315|ref|YP_003246539.1| - 0.036 14.2 2.7 0.037 14.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4760) Spore_III_AB PF09548.10 gi|261402315|ref|YP_003246539.1| - 0.043 13.9 0.3 4 7.5 0.0 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Methyltransf_17 PF12692.7 gi|261402315|ref|YP_003246539.1| - 0.16 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase Pro_sub2 PF18513.1 gi|261402315|ref|YP_003246539.1| - 2 8.6 6.4 16 5.7 0.1 3.2 2 2 1 3 3 3 0 Prodomain subtilisin 2 Shikimate_dh_N PF08501.11 gi|261402316|ref|YP_003246540.1| - 1.6e-31 108.3 0.0 4.6e-31 106.9 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|261402316|ref|YP_003246540.1| - 2.2e-16 59.3 0.0 4.7e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|261402316|ref|YP_003246540.1| - 2.6e-12 47.0 0.7 5e-12 46.1 0.7 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|261402316|ref|YP_003246540.1| - 6.1e-06 26.5 0.8 1.4e-05 25.3 0.3 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|261402316|ref|YP_003246540.1| - 0.00019 21.9 0.2 0.00048 20.7 0.2 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|261402316|ref|YP_003246540.1| - 0.0037 16.8 0.1 0.0066 15.9 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase Glyco_hydro_4 PF02056.16 gi|261402316|ref|YP_003246540.1| - 0.032 13.8 0.1 0.37 10.3 0.1 2.2 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase CoA_binding PF02629.19 gi|261402316|ref|YP_003246540.1| - 0.035 14.8 1.6 1.9 9.2 0.2 2.7 2 1 0 2 2 2 0 CoA binding domain TrkA_N PF02254.18 gi|261402316|ref|YP_003246540.1| - 0.043 14.1 0.7 0.12 12.6 0.4 1.9 1 1 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 gi|261402316|ref|YP_003246540.1| - 0.053 13.2 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|261402316|ref|YP_003246540.1| - 0.064 12.6 0.1 0.14 11.5 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peptidase_M60_C PF18630.1 gi|261402316|ref|YP_003246540.1| - 0.072 13.2 3.6 1.6 8.9 0.4 3.0 3 0 0 3 3 3 0 Peptidase M60 C-terminal domain PHA_gran_rgn PF09650.10 gi|261402316|ref|YP_003246540.1| - 0.11 12.8 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) IPT PF01745.16 gi|261402316|ref|YP_003246540.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase NAD_Gly3P_dh_N PF01210.23 gi|261402316|ref|YP_003246540.1| - 0.16 11.9 1.6 0.53 10.3 0.2 2.4 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FMN_red PF03358.15 gi|261402317|ref|YP_003246541.1| - 4.9e-40 136.8 0.0 5.8e-40 136.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|261402317|ref|YP_003246541.1| - 7.5e-13 48.6 0.0 8.9e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Fer4_21 PF14697.6 gi|261402317|ref|YP_003246541.1| - 0.017 15.2 0.5 0.028 14.5 0.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Flavodoxin_5 PF12724.7 gi|261402317|ref|YP_003246541.1| - 0.02 15.1 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 Flavodoxin domain TrmB PF01978.19 gi|261402318|ref|YP_003246542.1| - 3e-20 71.9 0.1 4.4e-20 71.3 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|261402318|ref|YP_003246542.1| - 2e-05 24.0 0.1 4.3e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|261402318|ref|YP_003246542.1| - 0.0011 19.2 0.1 0.0016 18.8 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|261402318|ref|YP_003246542.1| - 0.0013 18.4 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|261402318|ref|YP_003246542.1| - 0.0021 17.9 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_47 PF16221.5 gi|261402318|ref|YP_003246542.1| - 0.0034 16.9 0.0 0.0076 15.8 0.0 1.6 2 0 0 2 2 2 1 winged helix-turn-helix TFIIE_alpha PF02002.17 gi|261402318|ref|YP_003246542.1| - 0.0043 16.9 1.2 0.0051 16.7 1.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.21 gi|261402318|ref|YP_003246542.1| - 0.0047 16.6 0.0 0.0077 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|261402318|ref|YP_003246542.1| - 0.0049 16.7 0.0 0.044 13.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|261402318|ref|YP_003246542.1| - 0.0072 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|261402318|ref|YP_003246542.1| - 0.0084 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|261402318|ref|YP_003246542.1| - 0.009 15.8 0.1 0.012 15.4 0.1 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Ribosomal_L12 PF00542.19 gi|261402318|ref|YP_003246542.1| - 0.023 15.0 0.1 0.039 14.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L7/L12 C-terminal domain Fe_dep_repress PF01325.19 gi|261402318|ref|YP_003246542.1| - 0.023 14.9 0.0 0.13 12.5 0.0 2.2 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|261402318|ref|YP_003246542.1| - 0.031 14.1 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|261402318|ref|YP_003246542.1| - 0.076 13.1 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_27 PF13463.6 gi|261402318|ref|YP_003246542.1| - 0.081 13.4 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|261402318|ref|YP_003246542.1| - 0.089 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain RP-C PF03428.13 gi|261402318|ref|YP_003246542.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain UPF0047 PF01894.17 gi|261402319|ref|YP_003246543.1| - 1e-39 135.3 0.0 1.2e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Thioredoxin_8 PF13905.6 gi|261402320|ref|YP_003246544.1| - 0.0053 17.0 3.0 0.17 12.2 0.2 3.5 3 1 0 3 3 3 1 Thioredoxin-like DUF2517 PF10725.9 gi|261402320|ref|YP_003246544.1| - 0.12 12.1 1.6 0.51 10.1 0.4 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) Phage_holin_2_3 PF16080.5 gi|261402320|ref|YP_003246544.1| - 2.6 7.9 12.3 2.2 8.1 1.5 4.0 3 0 0 3 3 3 0 Bacteriophage holin family HP1 Glycos_transf_2 PF00535.26 gi|261402321|ref|YP_003246545.1| - 9.3e-29 100.4 0.1 1.2e-28 100.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|261402321|ref|YP_003246545.1| - 2e-09 37.7 0.0 2.4e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|261402321|ref|YP_003246545.1| - 0.0066 16.9 0.0 0.014 15.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 ADH_zinc_N PF00107.26 gi|261402321|ref|YP_003246545.1| - 0.11 12.4 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase XRCC4 PF06632.12 gi|261402322|ref|YP_003246546.1| - 0.32 9.8 0.1 0.35 9.7 0.1 1.1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 TctA PF01970.16 gi|261402323|ref|YP_003246547.1| - 7.4e-49 166.6 42.4 8.8e-49 166.3 42.4 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family LPG_synthase_TM PF03706.13 gi|261402324|ref|YP_003246548.1| - 4.1e-50 171.0 18.9 4.6e-50 170.9 18.9 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region MobB PF03205.14 gi|261402325|ref|YP_003246549.1| - 2.7e-26 92.0 0.5 4.4e-26 91.3 0.5 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.13 gi|261402325|ref|YP_003246549.1| - 1.2e-07 31.3 0.5 2e-07 30.5 0.5 1.4 1 0 0 1 1 1 1 Putative Fe-S cluster cobW PF02492.19 gi|261402325|ref|YP_003246549.1| - 6.7e-06 25.8 0.1 6.7e-06 25.8 0.1 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|261402325|ref|YP_003246549.1| - 0.00039 20.0 1.8 0.00051 19.6 0.4 1.8 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_14 PF13173.6 gi|261402325|ref|YP_003246549.1| - 0.0012 18.8 0.3 0.0024 17.9 0.2 1.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|261402325|ref|YP_003246549.1| - 0.016 15.3 0.5 0.031 14.4 0.2 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|261402325|ref|YP_003246549.1| - 0.027 15.0 0.0 0.039 14.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter ATP-synt_ab PF00006.25 gi|261402325|ref|YP_003246549.1| - 0.068 12.8 0.1 0.079 12.6 0.1 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 gi|261402325|ref|YP_003246549.1| - 0.1 13.1 0.4 0.29 11.7 0.4 1.8 1 1 0 1 1 1 0 AAA domain HTH_5 PF01022.20 gi|261402326|ref|YP_003246550.1| - 8.9e-22 76.7 0.1 1.4e-21 76.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|261402326|ref|YP_003246550.1| - 1.5e-14 53.8 0.0 1.8e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|261402326|ref|YP_003246550.1| - 3e-07 29.9 0.0 4.8e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|261402326|ref|YP_003246550.1| - 3.4e-05 23.6 0.0 5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|261402326|ref|YP_003246550.1| - 0.00048 20.3 0.0 0.00065 19.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|261402326|ref|YP_003246550.1| - 0.0018 18.6 0.0 0.0022 18.3 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor TFIIE_alpha PF02002.17 gi|261402326|ref|YP_003246550.1| - 0.012 15.4 0.1 0.018 14.9 0.1 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.22 gi|261402326|ref|YP_003246550.1| - 0.017 15.0 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 gi|261402326|ref|YP_003246550.1| - 0.022 14.8 0.0 0.032 14.3 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.10 gi|261402326|ref|YP_003246550.1| - 0.026 14.3 0.0 0.1 12.4 0.0 1.9 1 1 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|261402326|ref|YP_003246550.1| - 0.027 14.8 0.0 0.039 14.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|261402326|ref|YP_003246550.1| - 0.037 13.8 0.1 0.083 12.6 0.0 1.6 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|261402326|ref|YP_003246550.1| - 0.041 13.8 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|261402326|ref|YP_003246550.1| - 0.096 12.5 0.0 0.24 11.2 0.0 1.8 2 1 0 2 2 2 0 Homeodomain-like domain MMR_HSR1_Xtn PF16897.5 gi|261402327|ref|YP_003246551.1| - 1.9e-38 130.7 1.5 3.9e-38 129.7 1.5 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain TGS PF02824.21 gi|261402327|ref|YP_003246551.1| - 5.6e-25 87.2 0.0 1.2e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|261402327|ref|YP_003246551.1| - 2.1e-21 76.2 0.2 5e-21 74.9 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261402327|ref|YP_003246551.1| - 4.3e-14 52.3 1.7 1.7e-11 43.9 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|261402327|ref|YP_003246551.1| - 5.4e-08 32.9 1.8 0.0018 18.2 0.2 2.5 2 0 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|261402327|ref|YP_003246551.1| - 0.0016 18.0 0.7 1 8.9 0.1 2.5 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|261402327|ref|YP_003246551.1| - 0.0024 17.4 0.6 0.28 10.7 0.1 3.2 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain RRG8 PF17068.5 gi|261402327|ref|YP_003246551.1| - 0.0057 16.1 0.6 0.0091 15.4 0.6 1.3 1 0 0 1 1 1 1 Required for respiratory growth protein 8 mitochondrial Dynamin_N PF00350.23 gi|261402327|ref|YP_003246551.1| - 0.0099 16.0 0.2 1.3 9.0 0.2 2.4 1 1 1 2 2 2 1 Dynamin family YchF-GTPase_C PF06071.13 gi|261402327|ref|YP_003246551.1| - 0.01 16.0 0.2 0.097 12.9 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF933) SRPRB PF09439.10 gi|261402327|ref|YP_003246551.1| - 0.014 14.8 0.1 0.16 11.4 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|261402327|ref|YP_003246551.1| - 0.025 14.3 0.2 2.6 7.8 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|261402327|ref|YP_003246551.1| - 0.048 13.1 0.3 5.1 6.5 0.0 2.4 2 0 0 2 2 2 0 ADP-ribosylation factor family MeaB PF03308.16 gi|261402327|ref|YP_003246551.1| - 0.1 11.6 0.2 0.26 10.2 0.0 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PduV-EutP PF10662.9 gi|261402327|ref|YP_003246551.1| - 0.12 12.2 0.1 0.67 9.7 0.1 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|261402327|ref|YP_003246551.1| - 0.17 12.1 0.1 0.39 10.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain Diphthamide_syn PF01866.17 gi|261402328|ref|YP_003246552.1| - 5.1e-56 190.3 0.4 4.6e-34 118.2 0.1 2.1 1 1 1 2 2 2 2 Putative diphthamide synthesis protein SBP_bac_3 PF00497.20 gi|261402328|ref|YP_003246552.1| - 0.084 12.3 0.0 0.37 10.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DAPDH_C PF16654.5 gi|261402328|ref|YP_003246552.1| - 0.15 11.9 0.4 0.35 10.7 0.1 1.7 2 0 0 2 2 2 0 Diaminopimelic acid dehydrogenase C-terminal domain Ribosomal_S30AE PF02482.19 gi|261402328|ref|YP_003246552.1| - 0.18 12.6 4.0 19 6.2 0.1 3.1 2 1 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein HAD_SAK_1 PF10307.9 gi|261402328|ref|YP_003246552.1| - 0.47 10.2 3.9 36 4.1 1.0 3.0 3 0 0 3 3 3 0 HAD domain family 1 in Swiss Army Knife RNA repair proteins zf-ribbon_3 PF13248.6 gi|261402329|ref|YP_003246553.1| - 3.5e-05 23.0 10.4 0.074 12.5 0.1 3.3 3 0 0 3 3 3 2 zinc-ribbon domain zf-RING_7 PF02591.15 gi|261402329|ref|YP_003246553.1| - 0.00015 21.9 7.1 0.018 15.2 0.0 3.2 3 0 0 3 3 3 1 C4-type zinc ribbon domain zf-C2H2 PF00096.26 gi|261402329|ref|YP_003246553.1| - 0.00025 21.3 8.6 0.59 10.7 0.7 3.6 3 0 0 3 3 3 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|261402329|ref|YP_003246553.1| - 0.00055 20.5 8.8 1.2 10.1 0.9 3.5 3 0 0 3 3 3 1 C2H2-type zinc finger DZR PF12773.7 gi|261402329|ref|YP_003246553.1| - 0.0012 18.9 8.0 0.016 15.2 2.8 2.3 2 0 0 2 2 2 1 Double zinc ribbon zf-Di19 PF05605.12 gi|261402329|ref|YP_003246553.1| - 0.0028 17.9 10.1 1.9 8.8 0.5 3.2 3 0 0 3 3 3 1 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS91 PF14319.6 gi|261402329|ref|YP_003246553.1| - 0.0085 16.1 0.5 0.0085 16.1 0.5 2.0 1 1 1 2 2 2 1 Transposase zinc-binding domain zf-C2HC5 PF06221.13 gi|261402329|ref|YP_003246553.1| - 0.0099 15.8 9.1 1.8 8.6 1.0 3.1 2 1 1 3 3 3 1 Putative zinc finger motif, C2HC5-type Prok-RING_1 PF14446.6 gi|261402329|ref|YP_003246553.1| - 0.011 15.7 4.6 0.026 14.4 0.3 2.5 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Anti-TRAP PF15777.5 gi|261402329|ref|YP_003246553.1| - 0.055 13.4 1.8 0.46 10.5 0.2 2.3 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein CpXC PF14353.6 gi|261402329|ref|YP_003246553.1| - 0.056 13.5 7.7 2.3 8.3 0.3 3.0 1 1 2 3 3 3 0 CpXC protein Ribosomal_S27e PF01667.17 gi|261402329|ref|YP_003246553.1| - 0.064 13.0 0.2 0.064 13.0 0.2 2.4 2 1 1 3 3 3 0 Ribosomal protein S27 Cys_rich_CPXG PF14255.6 gi|261402329|ref|YP_003246553.1| - 0.078 12.9 13.2 2.1 8.3 0.2 3.3 3 0 0 3 3 3 0 Cysteine-rich CPXCG zf-ISL3 PF14690.6 gi|261402329|ref|YP_003246553.1| - 0.078 13.7 8.3 6.6 7.5 0.1 3.4 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|261402329|ref|YP_003246553.1| - 0.078 13.0 0.1 0.078 13.0 0.1 2.6 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YacG PF03884.14 gi|261402329|ref|YP_003246553.1| - 0.086 12.6 8.5 6.1 6.7 0.3 3.2 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG DUF3268 PF11672.8 gi|261402329|ref|YP_003246553.1| - 0.11 12.9 8.2 0.66 10.3 1.0 3.0 1 1 2 3 3 3 0 zinc-finger-containing domain Zn_Tnp_IS1595 PF12760.7 gi|261402329|ref|YP_003246553.1| - 0.11 12.5 11.0 1 9.4 0.4 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Mcm10 PF09332.11 gi|261402329|ref|YP_003246553.1| - 0.12 11.8 0.2 0.19 11.1 0.2 1.3 1 0 0 1 1 1 0 Mcm10 replication factor zf-C2H2_jaz PF12171.8 gi|261402329|ref|YP_003246553.1| - 0.12 12.7 11.3 1 9.7 0.5 3.8 3 1 1 4 4 4 0 Zinc-finger double-stranded RNA-binding DUF4451 PF14616.6 gi|261402329|ref|YP_003246553.1| - 0.15 12.2 9.9 6.7 6.9 0.4 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4451) Ogr_Delta PF04606.12 gi|261402329|ref|YP_003246553.1| - 0.2 11.7 7.6 4.9 7.2 0.2 3.3 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Sgf11 PF08209.11 gi|261402329|ref|YP_003246553.1| - 0.24 11.0 5.8 14 5.3 0.7 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-RRPl_C4 PF17026.5 gi|261402329|ref|YP_003246553.1| - 0.26 11.4 8.9 0.46 10.6 8.2 1.7 1 1 1 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type PyrI_C PF02748.15 gi|261402329|ref|YP_003246553.1| - 0.27 11.2 13.9 0.81 9.6 0.9 3.5 2 2 2 4 4 4 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-AN1 PF01428.16 gi|261402329|ref|YP_003246553.1| - 0.28 11.4 11.0 0.95 9.7 0.3 3.3 3 0 0 3 3 3 0 AN1-like Zinc finger Ribosomal_L37ae PF01780.19 gi|261402329|ref|YP_003246553.1| - 0.32 11.1 3.4 6.5 6.9 0.2 2.4 2 1 0 2 2 2 0 Ribosomal L37ae protein family zf-CHCC PF10276.9 gi|261402329|ref|YP_003246553.1| - 0.39 10.8 11.1 1.9 8.6 0.5 3.4 3 0 0 3 3 3 0 Zinc-finger domain zinc_ribbon_9 PF14369.6 gi|261402329|ref|YP_003246553.1| - 0.47 10.7 11.7 11 6.4 0.6 3.3 3 0 0 3 3 3 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|261402329|ref|YP_003246553.1| - 0.64 10.2 12.3 0.16 12.1 4.2 2.7 2 1 1 3 3 3 0 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|261402329|ref|YP_003246553.1| - 0.73 9.6 4.5 1.1 9.1 0.9 2.7 2 1 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|261402329|ref|YP_003246553.1| - 0.76 9.8 8.5 13 5.8 1.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.12 gi|261402329|ref|YP_003246553.1| - 0.83 9.7 8.0 18 5.4 8.0 2.7 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.6 gi|261402329|ref|YP_003246553.1| - 1 9.9 15.8 1 9.9 0.5 3.5 2 1 1 3 3 3 0 Zinc-finger double domain zf-HYPF PF07503.12 gi|261402329|ref|YP_003246553.1| - 1 9.2 9.3 2.2 8.1 0.1 3.6 3 0 0 3 3 3 0 HypF finger UPF0547 PF10571.9 gi|261402329|ref|YP_003246553.1| - 1.3 9.1 11.1 3.9 7.6 0.1 3.4 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF1360 PF07098.11 gi|261402329|ref|YP_003246553.1| - 1.6 8.7 5.9 0.27 11.2 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1360) DpnI PF06044.12 gi|261402329|ref|YP_003246553.1| - 1.7 8.2 6.8 1.9 8.1 1.3 2.1 2 0 0 2 2 2 0 Dam-replacing family SoxD PF04267.12 gi|261402329|ref|YP_003246553.1| - 1.9 8.6 4.6 27 4.9 0.1 2.9 3 0 0 3 3 3 0 Sarcosine oxidase, delta subunit family zf_UBZ PF18439.1 gi|261402329|ref|YP_003246553.1| - 2.1 8.0 7.7 19 5.0 0.0 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger FANCL_C PF11793.8 gi|261402329|ref|YP_003246553.1| - 2.5 8.3 9.6 16 5.8 0.7 3.3 3 0 0 3 3 3 0 FANCL C-terminal domain zf-TFIIB PF13453.6 gi|261402329|ref|YP_003246553.1| - 4.3 6.8 8.8 0.15 11.4 1.2 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-BED PF02892.15 gi|261402329|ref|YP_003246553.1| - 4.8 7.3 10.1 1.6 8.8 0.1 3.2 2 1 1 3 3 3 0 BED zinc finger TF_Zn_Ribbon PF08271.12 gi|261402329|ref|YP_003246553.1| - 5.9 6.5 11.3 9 5.9 2.8 2.8 2 1 1 3 3 3 0 TFIIB zinc-binding zf-LITAF-like PF10601.9 gi|261402329|ref|YP_003246553.1| - 7.6 6.9 11.9 4.5 7.6 2.8 2.9 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain DUF2256 PF10013.9 gi|261402329|ref|YP_003246553.1| - 8.6 6.6 9.9 29 4.9 3.4 3.1 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) NYN PF01936.18 gi|261402330|ref|YP_003246554.1| - 1.3e-26 93.8 0.2 2.1e-26 93.2 0.2 1.4 1 1 0 1 1 1 1 NYN domain EMC3_TMCO1 PF01956.16 gi|261402331|ref|YP_003246555.1| - 3e-28 98.7 8.8 3.6e-28 98.4 8.8 1.0 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF2232 PF09991.9 gi|261402331|ref|YP_003246555.1| - 0.00048 19.4 2.9 0.00082 18.6 2.9 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2232) 60KD_IMP PF02096.20 gi|261402331|ref|YP_003246555.1| - 0.0033 17.4 10.1 0.0058 16.5 10.1 1.6 1 1 0 1 1 1 1 60Kd inner membrane protein DUF4199 PF13858.6 gi|261402331|ref|YP_003246555.1| - 0.0034 17.8 4.6 0.0034 17.8 4.6 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4199) Uds1 PF15456.6 gi|261402331|ref|YP_003246555.1| - 0.012 15.7 1.8 0.017 15.3 1.8 1.1 1 0 0 1 1 1 0 Up-regulated During Septation DUF4079 PF13301.6 gi|261402331|ref|YP_003246555.1| - 0.015 15.4 1.0 0.028 14.6 0.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) Bul1_C PF04426.12 gi|261402331|ref|YP_003246555.1| - 0.019 14.4 2.1 0.025 14.0 2.1 1.1 1 0 0 1 1 1 0 Bul1 C terminus T2SSF PF00482.23 gi|261402331|ref|YP_003246555.1| - 0.066 13.2 0.7 0.066 13.2 0.7 2.2 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F FlgM PF04316.13 gi|261402331|ref|YP_003246555.1| - 0.092 13.1 0.2 0.092 13.1 0.2 1.6 2 0 0 2 2 2 0 Anti-sigma-28 factor, FlgM Bac_export_2 PF01312.19 gi|261402331|ref|YP_003246555.1| - 0.13 11.4 6.2 0.11 11.6 5.3 1.4 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family AAA_17 PF13207.6 gi|261402332|ref|YP_003246556.1| - 4.2e-41 140.5 0.2 5.8e-41 140.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|261402332|ref|YP_003246556.1| - 1.3e-09 38.7 0.1 4.1e-09 37.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|261402332|ref|YP_003246556.1| - 0.00037 20.7 0.0 0.00068 19.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|261402332|ref|YP_003246556.1| - 0.0021 18.0 0.7 0.0038 17.2 0.2 1.7 2 0 0 2 2 2 1 NTPase SRP54 PF00448.22 gi|261402332|ref|YP_003246556.1| - 0.0021 17.7 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain 6PF2K PF01591.18 gi|261402332|ref|YP_003246556.1| - 0.0025 17.1 0.3 0.012 14.9 0.0 1.8 2 0 0 2 2 2 1 6-phosphofructo-2-kinase DUF1884 PF08967.10 gi|261402332|ref|YP_003246556.1| - 0.0081 16.4 1.3 0.033 14.4 0.5 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF1884) MeaB PF03308.16 gi|261402332|ref|YP_003246556.1| - 0.011 14.7 0.2 0.027 13.5 0.2 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|261402332|ref|YP_003246556.1| - 0.012 14.8 0.0 0.016 14.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 gi|261402332|ref|YP_003246556.1| - 0.015 15.6 2.0 0.034 14.5 2.0 2.0 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|261402332|ref|YP_003246556.1| - 0.026 14.0 0.1 0.035 13.6 0.1 1.3 1 1 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.14 gi|261402332|ref|YP_003246556.1| - 0.031 14.2 0.1 0.071 13.0 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.21 gi|261402332|ref|YP_003246556.1| - 0.039 13.6 0.8 6.7 6.4 0.3 2.3 2 0 0 2 2 2 0 Guanylate kinase Thymidylate_kin PF02223.17 gi|261402332|ref|YP_003246556.1| - 0.04 13.6 1.5 4.4 6.9 0.0 2.7 2 1 0 2 2 2 0 Thymidylate kinase DUF1611 PF07755.11 gi|261402332|ref|YP_003246556.1| - 0.042 13.1 0.1 0.14 11.5 0.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_7 PF12775.7 gi|261402332|ref|YP_003246556.1| - 0.046 13.2 1.6 0.055 13.0 0.2 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|261402332|ref|YP_003246556.1| - 0.06 13.6 0.3 0.13 12.5 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|261402332|ref|YP_003246556.1| - 0.072 13.5 0.0 0.11 12.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|261402332|ref|YP_003246556.1| - 0.084 12.6 0.5 0.16 11.7 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein APS_kinase PF01583.20 gi|261402332|ref|YP_003246556.1| - 0.097 12.6 0.1 0.27 11.1 0.1 1.8 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.6 gi|261402332|ref|YP_003246556.1| - 0.12 12.6 0.1 0.19 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|261402332|ref|YP_003246556.1| - 0.19 11.4 1.0 0.27 10.9 0.2 1.8 2 1 0 2 2 2 0 AAA domain SecY PF00344.20 gi|261402333|ref|YP_003246557.1| - 8.2e-66 222.3 21.8 1.1e-65 222.0 21.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|261402333|ref|YP_003246557.1| - 7.3e-06 25.7 1.9 0.0001 22.1 0.2 3.3 3 0 0 3 3 3 1 Plug domain of Sec61p DUF5527 PF17665.1 gi|261402333|ref|YP_003246557.1| - 0.052 13.1 0.5 0.8 9.2 0.0 2.8 2 1 1 3 3 3 0 Family of unknown function (DUF5527) Ribosomal_L27A PF00828.19 gi|261402334|ref|YP_003246558.1| - 5.4e-24 85.3 0.5 7.8e-24 84.8 0.5 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|261402334|ref|YP_003246558.1| - 0.12 11.8 0.9 0.12 11.7 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein 60S L18 and 50S L18e DUF4221 PF13970.6 gi|261402334|ref|YP_003246558.1| - 0.21 11.1 0.1 0.27 10.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4221) Ribosomal_L30 PF00327.20 gi|261402335|ref|YP_003246559.1| - 1.9e-17 62.8 0.4 4.3e-17 61.7 0.4 1.6 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|261402336|ref|YP_003246560.1| - 7.4e-27 93.1 7.5 1.2e-26 92.5 6.2 1.9 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|261402336|ref|YP_003246560.1| - 5.8e-24 83.3 0.1 9.4e-24 82.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|261402337|ref|YP_003246561.1| - 4e-31 108.2 5.2 9.3e-19 68.0 1.0 2.9 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|261402337|ref|YP_003246561.1| - 2e-14 54.3 1.3 4.1e-14 53.3 1.3 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|261402337|ref|YP_003246561.1| - 5.3e-07 30.0 0.1 7.9e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|261402338|ref|YP_003246562.1| - 4.2e-56 189.0 9.2 4.6e-56 188.9 9.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e baeRF_family12 PF18856.1 gi|261402338|ref|YP_003246562.1| - 0.024 15.2 0.2 0.037 14.6 0.2 1.4 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 Ribosomal_L32e PF01655.18 gi|261402339|ref|YP_003246563.1| - 1.2e-39 135.1 1.0 1.5e-39 134.7 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|261402340|ref|YP_003246564.1| - 2.4e-35 121.0 12.7 1.9e-17 63.7 2.7 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DNA_pol3_beta PF00712.19 gi|261402340|ref|YP_003246564.1| - 0.11 12.6 0.3 20 5.3 0.0 2.7 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DUF4073 PF13285.6 gi|261402340|ref|YP_003246564.1| - 0.16 11.6 1.6 2.2 7.9 0.1 3.0 1 1 2 4 4 4 0 Domain of unknown function (DUF4073) CooT PF10133.9 gi|261402340|ref|YP_003246564.1| - 0.73 10.2 4.9 1.2 9.5 0.1 3.2 2 2 2 4 4 4 0 CO dehydrogenase accessory protein CooT Ribosomal_S8 PF00410.19 gi|261402341|ref|YP_003246565.1| - 4.1e-28 97.9 0.0 4.7e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|261402342|ref|YP_003246566.1| - 3.9e-11 42.6 2.1 4.2e-11 42.4 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e RecR PF02132.15 gi|261402342|ref|YP_003246566.1| - 0.088 12.4 2.1 0.45 10.1 0.1 2.0 2 0 0 2 2 2 0 RecR protein Ribosomal_L5_C PF00673.21 gi|261402343|ref|YP_003246567.1| - 1.9e-26 92.0 0.0 5.5e-26 90.6 0.0 1.8 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|261402343|ref|YP_003246567.1| - 6.9e-20 71.1 0.1 1.3e-19 70.3 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|261402344|ref|YP_003246568.1| - 7.2e-25 86.7 0.6 1.5e-24 85.7 0.6 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|261402344|ref|YP_003246568.1| - 2.1e-14 53.3 6.2 4e-14 52.4 6.2 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|261402344|ref|YP_003246568.1| - 1.7e-07 30.8 2.7 2e-07 30.6 0.3 2.3 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|261402344|ref|YP_003246568.1| - 0.0002 21.2 0.3 0.0002 21.2 0.3 2.3 2 0 0 2 2 2 1 KOW motif S4_2 PF13275.6 gi|261402344|ref|YP_003246568.1| - 0.00021 21.0 1.4 0.00042 20.1 0.2 2.1 2 0 0 2 2 2 1 S4 domain Ribosomal_L26 PF16906.5 gi|261402345|ref|YP_003246569.1| - 8.9e-30 103.0 1.3 1.1e-29 102.7 1.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|261402345|ref|YP_003246569.1| - 8.2e-10 38.3 3.0 8.2e-10 38.3 3.0 1.6 2 0 0 2 2 2 1 KOW motif ribosomal_L24 PF17136.4 gi|261402345|ref|YP_003246569.1| - 0.01 16.2 2.5 0.047 14.1 0.3 2.3 2 0 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 AAL_decarboxy PF03306.13 gi|261402345|ref|YP_003246569.1| - 0.021 14.2 0.0 0.03 13.7 0.0 1.3 1 1 0 1 1 1 0 Alpha-acetolactate decarboxylase Dermcidin PF15291.6 gi|261402345|ref|YP_003246569.1| - 0.17 12.4 0.2 0.27 11.8 0.2 1.4 1 0 0 1 1 1 0 Dermcidin, antibiotic peptide Ribosomal_L14 PF00238.19 gi|261402346|ref|YP_003246570.1| - 2e-35 121.5 1.6 2.5e-35 121.2 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e SBP_bac_11 PF13531.6 gi|261402346|ref|YP_003246570.1| - 0.13 12.0 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Ribosomal_S17 PF00366.20 gi|261402347|ref|YP_003246571.1| - 4.4e-25 87.6 2.9 6.2e-25 87.1 2.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|261402347|ref|YP_003246571.1| - 0.00065 20.0 0.6 0.0011 19.3 0.1 1.7 2 0 0 2 2 2 1 Ribosomal_S17 N-terminal DUF2535 PF10751.9 gi|261402347|ref|YP_003246571.1| - 0.11 13.0 0.0 0.18 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2535) UPF0086 PF01868.16 gi|261402348|ref|YP_003246572.1| - 2.9e-25 88.0 0.3 3.3e-25 87.8 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 TFIIA_gamma_C PF02751.14 gi|261402348|ref|YP_003246572.1| - 0.044 13.9 0.1 0.085 13.0 0.1 1.5 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit ATP-grasp_6 PF18419.1 gi|261402348|ref|YP_003246572.1| - 0.094 12.4 1.1 1.1 8.9 0.1 2.1 1 1 1 2 2 2 0 ATP-grasp-like domain Myco_arth_vir_N PF09610.10 gi|261402348|ref|YP_003246572.1| - 0.32 11.1 3.3 0.75 9.9 3.3 1.7 1 0 0 1 1 1 0 Mycoplasma virulence signal region (Myco_arth_vir_N) SUI1 PF01253.22 gi|261402349|ref|YP_003246573.1| - 5.2e-22 78.2 0.9 6.4e-22 77.9 0.9 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 DTW PF03942.15 gi|261402349|ref|YP_003246573.1| - 0.00026 20.8 0.8 0.00036 20.3 0.8 1.2 1 0 0 1 1 1 1 DTW domain Img2 PF05046.14 gi|261402349|ref|YP_003246573.1| - 0.037 14.3 0.1 0.054 13.8 0.1 1.3 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF1421 PF07223.11 gi|261402349|ref|YP_003246573.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 UBA-like domain (DUF1421) Ribosomal_L29 PF00831.23 gi|261402350|ref|YP_003246574.1| - 1.6e-21 76.0 1.4 1.8e-21 75.9 1.4 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DUF1192 PF06698.11 gi|261402350|ref|YP_003246574.1| - 0.012 15.6 0.6 0.012 15.6 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) MRP-L47 PF06984.13 gi|261402350|ref|YP_003246574.1| - 0.037 14.2 0.4 0.18 11.9 0.4 1.8 1 1 0 1 1 1 0 Mitochondrial 39-S ribosomal protein L47 (MRP-L47) FlgM PF04316.13 gi|261402350|ref|YP_003246574.1| - 0.086 13.2 0.7 2.4 8.6 0.1 2.1 1 1 1 2 2 2 0 Anti-sigma-28 factor, FlgM Ribosomal_S3_C PF00189.20 gi|261402351|ref|YP_003246575.1| - 2.1e-26 92.3 2.1 3.5e-26 91.5 2.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|261402351|ref|YP_003246575.1| - 7.7e-17 60.9 0.6 3.4e-16 58.8 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|261402351|ref|YP_003246575.1| - 0.0037 17.0 0.1 0.011 15.6 0.1 1.8 1 0 0 1 1 1 1 KH domain KH_5 PF13184.6 gi|261402351|ref|YP_003246575.1| - 0.032 14.3 0.2 0.083 13.0 0.0 1.8 2 0 0 2 2 2 0 NusA-like KH domain Ribosomal_L22 PF00237.19 gi|261402352|ref|YP_003246576.1| - 2e-32 111.5 0.6 2.3e-32 111.3 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e RE_CfrBI PF09516.10 gi|261402352|ref|YP_003246576.1| - 0.032 13.7 0.1 0.048 13.1 0.0 1.4 1 1 0 1 1 1 0 CfrBI restriction endonuclease EF1_GNE PF00736.19 gi|261402353|ref|YP_003246577.1| - 1.4e-16 60.5 1.5 1.6e-16 60.3 1.5 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3375 PF11855.8 gi|261402353|ref|YP_003246577.1| - 0.064 12.2 0.1 0.068 12.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) DUF1610 PF07754.11 gi|261402354|ref|YP_003246578.1| - 8.9e-15 54.3 15.8 1.1e-14 54.0 6.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-CHY PF05495.12 gi|261402354|ref|YP_003246578.1| - 0.0014 19.1 8.4 0.0017 18.8 8.4 1.2 1 0 0 1 1 1 1 CHY zinc finger zf-HIT PF04438.16 gi|261402354|ref|YP_003246578.1| - 0.0015 18.3 14.4 0.063 13.2 5.2 3.1 3 0 0 3 3 3 1 HIT zinc finger zinc_ribbon_2 PF13240.6 gi|261402354|ref|YP_003246578.1| - 0.0028 17.3 20.9 0.013 15.2 3.7 3.5 2 2 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|261402354|ref|YP_003246578.1| - 0.0031 17.2 14.6 1.1 9.0 0.1 3.9 3 1 0 3 3 3 2 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|261402354|ref|YP_003246578.1| - 0.0036 17.2 14.1 1.3 9.1 2.6 4.0 3 1 0 3 3 3 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|261402354|ref|YP_003246578.1| - 0.0062 16.1 13.9 3.1 7.5 0.2 4.0 3 1 1 4 4 4 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_9 PF14369.6 gi|261402354|ref|YP_003246578.1| - 0.0095 16.2 1.0 0.0095 16.2 1.0 2.4 1 1 1 2 2 2 1 zinc-ribbon DZR PF12773.7 gi|261402354|ref|YP_003246578.1| - 0.011 15.7 13.9 0.15 12.1 13.9 2.2 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|261402354|ref|YP_003246578.1| - 0.015 15.4 16.1 0.025 14.7 4.3 2.9 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|261402354|ref|YP_003246578.1| - 0.021 14.9 12.3 0.04 13.9 1.2 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|261402354|ref|YP_003246578.1| - 0.025 14.5 4.1 0.025 14.5 4.1 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF2752 PF10825.8 gi|261402354|ref|YP_003246578.1| - 0.064 13.3 3.9 0.46 10.6 0.0 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF2752) MCM_OB PF17207.3 gi|261402354|ref|YP_003246578.1| - 0.16 11.8 6.6 0.2 11.5 6.6 1.2 1 0 0 1 1 1 0 MCM OB domain zf-H2C2_2 PF13465.6 gi|261402354|ref|YP_003246578.1| - 0.22 12.0 20.3 0.28 11.7 0.8 4.0 3 1 1 4 4 4 0 Zinc-finger double domain tRNA-synt_1f PF01921.18 gi|261402354|ref|YP_003246578.1| - 0.27 10.1 0.4 0.26 10.2 0.4 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (K) Elf1 PF05129.13 gi|261402354|ref|YP_003246578.1| - 0.28 11.3 11.9 0.15 12.1 6.7 2.6 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-AN1 PF01428.16 gi|261402354|ref|YP_003246578.1| - 0.37 11.0 12.5 2.2 8.5 4.4 2.5 1 1 0 2 2 2 0 AN1-like Zinc finger OrfB_Zn_ribbon PF07282.11 gi|261402354|ref|YP_003246578.1| - 0.38 10.7 11.6 0.44 10.5 1.0 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|261402354|ref|YP_003246578.1| - 0.39 10.2 17.7 2 8.0 0.9 3.7 3 1 0 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|261402354|ref|YP_003246578.1| - 0.39 10.5 14.1 2.3 8.0 0.2 3.9 4 0 0 4 4 4 0 Rubredoxin metal binding domain NOB1_Zn_bind PF08772.11 gi|261402354|ref|YP_003246578.1| - 0.42 10.8 10.9 0.078 13.1 2.0 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DNA_RNApol_7kD PF03604.13 gi|261402354|ref|YP_003246578.1| - 0.6 9.8 15.4 4.4 7.1 2.1 3.3 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit PolC_DP2 PF03833.13 gi|261402354|ref|YP_003246578.1| - 0.61 7.9 7.1 0.62 7.8 7.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Prim_Zn_Ribbon PF08273.12 gi|261402354|ref|YP_003246578.1| - 0.84 10.0 0.4 0.84 10.0 0.4 3.5 3 1 1 4 4 4 0 Zinc-binding domain of primase-helicase zf-Mss51 PF13824.6 gi|261402354|ref|YP_003246578.1| - 0.91 9.7 13.2 8.5e+02 0.2 13.1 2.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TFIIS_C PF01096.18 gi|261402354|ref|YP_003246578.1| - 1.3 8.9 17.9 5.4 7.0 0.4 4.0 3 1 1 4 4 4 0 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.10 gi|261402354|ref|YP_003246578.1| - 1.6 8.6 15.6 4 7.3 0.3 3.9 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-MYND PF01753.18 gi|261402354|ref|YP_003246578.1| - 1.7 8.8 12.5 2.6 8.2 1.1 2.2 2 0 0 2 2 2 0 MYND finger zf-NADH-PPase PF09297.11 gi|261402354|ref|YP_003246578.1| - 1.8 8.3 9.0 13 5.6 0.1 3.8 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain C1_2 PF03107.16 gi|261402354|ref|YP_003246578.1| - 2 8.8 14.7 6.4 7.2 8.0 2.9 1 1 1 2 2 2 0 C1 domain zf-ACC PF17848.1 gi|261402354|ref|YP_003246578.1| - 2.4 8.3 17.5 14 5.9 1.6 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L37ae PF01780.19 gi|261402354|ref|YP_003246578.1| - 4.3 7.5 10.4 6 7.0 0.9 3.1 1 1 2 3 3 3 0 Ribosomal L37ae protein family Zn_ribbon_SprT PF17283.2 gi|261402354|ref|YP_003246578.1| - 5.2 7.1 16.7 1.7e+04 -4.2 16.7 3.8 1 1 0 1 1 0 0 SprT-like zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|261402354|ref|YP_003246578.1| - 6.6 6.8 16.4 10 6.2 0.4 3.8 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Zn_Tnp_IS91 PF14319.6 gi|261402354|ref|YP_003246578.1| - 8.1 6.6 10.5 1.7 8.7 1.0 2.3 1 1 1 2 2 2 0 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.12 gi|261402354|ref|YP_003246578.1| - 9.3 5.9 19.5 7.3 6.2 1.1 3.4 2 1 0 3 3 3 0 TFIIB zinc-binding RNHCP PF12647.7 gi|261402354|ref|YP_003246578.1| - 9.9 6.2 13.2 0.78 9.8 1.5 2.8 1 1 2 3 3 3 0 RNHCP domain AA_kinase PF00696.28 gi|261402355|ref|YP_003246579.1| - 7.6e-15 55.2 0.8 9.9e-13 48.2 0.8 2.1 1 1 0 1 1 1 1 Amino acid kinase family Glycos_transf_2 PF00535.26 gi|261402356|ref|YP_003246580.1| - 1.9e-28 99.4 0.0 2.4e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|261402356|ref|YP_003246580.1| - 6.5e-06 26.2 0.0 7.7e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|261402356|ref|YP_003246580.1| - 9.4e-06 26.1 0.0 1.5e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Dala_Dala_lig_N PF01820.21 gi|261402356|ref|YP_003246580.1| - 0.092 13.2 0.1 0.28 11.7 0.0 1.8 2 0 0 2 2 2 0 D-ala D-ala ligase N-terminus DUF3767 PF12597.8 gi|261402357|ref|YP_003246581.1| - 0.04 13.7 1.1 0.07 13.0 1.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3767) TssN PF17555.2 gi|261402357|ref|YP_003246581.1| - 0.44 9.9 3.5 0.53 9.6 3.5 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN MrpF_PhaF PF04066.13 gi|261402357|ref|YP_003246581.1| - 2 8.9 10.9 0.19 12.2 5.1 1.9 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) ATP-grasp PF02222.22 gi|261402358|ref|YP_003246582.1| - 2.5e-61 206.2 0.0 4.7e-61 205.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|261402358|ref|YP_003246582.1| - 3.4e-09 36.5 0.1 1.3e-08 34.7 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|261402358|ref|YP_003246582.1| - 1.3e-07 31.3 0.0 2.5e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|261402358|ref|YP_003246582.1| - 5e-07 29.7 0.3 2e-06 27.7 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.14 gi|261402358|ref|YP_003246582.1| - 6e-06 26.4 0.1 2.4e-05 24.5 0.1 2.0 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|261402358|ref|YP_003246582.1| - 1.9e-05 24.4 0.0 0.00015 21.4 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain Epimerase PF01370.21 gi|261402358|ref|YP_003246582.1| - 0.0015 18.0 0.0 0.0061 16.1 0.0 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|261402358|ref|YP_003246582.1| - 0.0046 16.3 0.1 0.016 14.5 0.0 1.9 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|261402358|ref|YP_003246582.1| - 0.007 16.0 0.1 0.039 13.6 0.1 2.2 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|261402358|ref|YP_003246582.1| - 0.02 14.1 0.1 0.058 12.6 0.1 1.8 1 1 0 1 1 1 0 Sugar-transfer associated ATP-grasp ATPgrasp_N PF18130.1 gi|261402358|ref|YP_003246582.1| - 0.04 14.5 0.0 0.2 12.3 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp N-terminal domain Beta-Casp PF10996.8 gi|261402359|ref|YP_003246583.1| - 1.5e-17 63.9 0.0 3e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|261402359|ref|YP_003246583.1| - 4.8e-12 46.3 0.0 4.8e-10 39.8 0.0 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|261402359|ref|YP_003246583.1| - 3.6e-11 42.8 0.1 6.9e-11 41.9 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|261402359|ref|YP_003246583.1| - 2.1e-07 30.6 0.0 5.3e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|261402359|ref|YP_003246583.1| - 2.7e-07 30.4 0.0 6.4e-07 29.2 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_3 PF13483.6 gi|261402359|ref|YP_003246583.1| - 0.013 15.4 0.1 0.052 13.4 0.0 2.2 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Methyltransf_10 PF05971.12 gi|261402360|ref|YP_003246584.1| - 2.7e-14 53.2 0.2 4.4e-14 52.5 0.2 1.5 1 1 0 1 1 1 1 RNA methyltransferase MTS PF05175.14 gi|261402360|ref|YP_003246584.1| - 1.3e-10 41.0 0.0 5.7e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|261402360|ref|YP_003246584.1| - 4.9e-09 36.0 0.1 7.2e-09 35.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|261402360|ref|YP_003246584.1| - 1.9e-07 31.7 0.0 3.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|261402360|ref|YP_003246584.1| - 3.7e-07 30.0 0.0 6.1e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261402360|ref|YP_003246584.1| - 3.4e-06 27.1 1.3 7.4e-06 26.0 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|261402360|ref|YP_003246584.1| - 5.9e-06 26.9 0.2 2.2e-05 25.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|261402360|ref|YP_003246584.1| - 3.5e-05 24.4 0.0 6.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|261402360|ref|YP_003246584.1| - 0.00016 21.5 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 Lysine methyltransferase DUF4467 PF14729.6 gi|261402360|ref|YP_003246584.1| - 0.007 16.7 6.6 0.012 16.0 0.9 2.5 2 0 0 2 2 2 1 Domain of unknown function with cystatin-like fold (DUF4467) Methyltransf_3 PF01596.17 gi|261402360|ref|YP_003246584.1| - 0.011 15.0 1.1 0.025 13.8 0.1 1.8 2 0 0 2 2 2 0 O-methyltransferase TrmK PF04816.12 gi|261402360|ref|YP_003246584.1| - 0.018 14.6 0.1 0.041 13.4 0.1 1.6 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase N6_Mtase PF02384.16 gi|261402360|ref|YP_003246584.1| - 0.03 13.6 0.0 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase N6-adenineMlase PF10237.9 gi|261402360|ref|YP_003246584.1| - 0.046 13.5 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase UPF0020 PF01170.18 gi|261402360|ref|YP_003246584.1| - 0.075 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|261402360|ref|YP_003246584.1| - 0.079 12.5 0.1 0.15 11.6 0.1 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DBI_PRT PF02277.17 gi|261402361|ref|YP_003246585.1| - 1.3e-07 31.2 0.1 1.8e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyltransferase Pribosyltran PF00156.27 gi|261402362|ref|YP_003246586.1| - 5.5e-18 65.0 0.1 8.3e-18 64.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_11 PF08279.12 gi|261402362|ref|YP_003246586.1| - 0.00073 19.4 0.0 0.0034 17.3 0.0 2.2 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|261402362|ref|YP_003246586.1| - 0.0013 18.3 0.5 0.0026 17.4 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|261402362|ref|YP_003246586.1| - 0.0039 16.7 0.0 0.01 15.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|261402362|ref|YP_003246586.1| - 0.0039 17.2 0.0 0.01 15.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|261402362|ref|YP_003246586.1| - 0.013 15.3 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.19 gi|261402362|ref|YP_003246586.1| - 0.041 13.4 0.1 0.078 12.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|261402362|ref|YP_003246586.1| - 0.046 13.3 0.1 0.37 10.4 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_ECF PF07638.11 gi|261402362|ref|YP_003246586.1| - 0.052 13.4 0.1 0.081 12.8 0.1 1.3 1 0 0 1 1 1 0 ECF sigma factor HisG PF01634.18 gi|261402362|ref|YP_003246586.1| - 0.055 13.4 0.2 0.13 12.3 0.1 1.6 1 1 1 2 2 2 0 ATP phosphoribosyltransferase HTH_DeoR PF08220.12 gi|261402362|ref|YP_003246586.1| - 0.073 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_40 PF14493.6 gi|261402362|ref|YP_003246586.1| - 0.087 13.3 0.7 0.65 10.5 0.2 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|261402362|ref|YP_003246586.1| - 0.093 12.9 0.1 0.24 11.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.23 gi|261402362|ref|YP_003246586.1| - 0.099 12.4 0.2 0.33 10.7 0.0 1.9 2 0 0 2 2 2 0 MerR family regulatory protein PRTase_2 PF15609.6 gi|261402362|ref|YP_003246586.1| - 0.13 11.7 0.1 0.31 10.5 0.0 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase TnsD PF15978.5 gi|261402362|ref|YP_003246586.1| - 0.18 10.8 0.1 0.35 9.8 0.1 1.5 2 0 0 2 2 2 0 Tn7-like transposition protein D CBFD_NFYB_HMF PF00808.23 gi|261402363|ref|YP_003246587.1| - 1e-12 48.1 2.8 1e-12 48.1 2.8 1.5 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF1931 PF09123.11 gi|261402363|ref|YP_003246587.1| - 4.1e-05 23.7 1.7 4.5e-05 23.6 1.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.24 gi|261402363|ref|YP_003246587.1| - 9.4e-05 22.8 0.5 9.4e-05 22.8 0.5 1.4 2 0 0 2 2 2 1 Core histone H2A/H2B/H3/H4 PBECR1 PF18809.1 gi|261402363|ref|YP_003246587.1| - 0.0075 16.9 1.9 0.01 16.5 1.2 1.6 1 1 1 2 2 2 1 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1 CENP-T_C PF15511.6 gi|261402363|ref|YP_003246587.1| - 0.0087 16.2 0.2 0.012 15.8 0.2 1.3 1 1 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|261402363|ref|YP_003246587.1| - 0.018 15.4 0.2 0.024 15.0 0.2 1.3 1 0 0 1 1 1 0 CENP-S protein MerR_2 PF13591.6 gi|261402363|ref|YP_003246587.1| - 0.025 14.4 0.3 0.045 13.6 0.0 1.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein TIP49_C PF17856.1 gi|261402363|ref|YP_003246587.1| - 0.05 13.7 1.1 1.2 9.3 1.1 2.3 1 1 0 1 1 1 0 TIP49 AAA-lid domain GATase_5 PF13507.6 gi|261402364|ref|YP_003246588.1| - 7.9e-47 159.5 0.0 1.1e-46 159.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|261402364|ref|YP_003246588.1| - 6.7e-06 26.0 0.1 1.4e-05 25.0 0.0 1.5 2 0 0 2 2 2 1 DJ-1/PfpI family GATase PF00117.28 gi|261402364|ref|YP_003246588.1| - 0.00013 21.8 0.1 0.00016 21.5 0.1 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|261402364|ref|YP_003246588.1| - 0.00045 19.9 0.1 0.00077 19.1 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|261402364|ref|YP_003246588.1| - 0.036 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 DUF1364 PF07102.12 gi|261402364|ref|YP_003246588.1| - 0.15 11.9 0.2 3.2 7.7 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1364) Arginase PF00491.21 gi|261402365|ref|YP_003246589.1| - 4.2e-72 243.0 0.0 4.9e-72 242.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family NMT1_2 PF13379.6 gi|261402366|ref|YP_003246590.1| - 7.4e-29 101.2 0.1 9.6e-29 100.8 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family OpuAC PF04069.12 gi|261402366|ref|YP_003246590.1| - 0.00046 19.8 0.1 0.0024 17.5 0.1 2.2 1 1 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system NMT1 PF09084.11 gi|261402366|ref|YP_003246590.1| - 0.00078 19.4 0.2 0.0032 17.4 0.2 2.0 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|261402366|ref|YP_003246590.1| - 0.013 14.9 0.1 0.13 11.7 0.0 2.3 2 1 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 MS_channel PF00924.18 gi|261402367|ref|YP_003246591.1| - 4.5e-63 212.5 1.8 9.6e-63 211.4 1.8 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel TRAPPC-Trs85 PF12739.7 gi|261402367|ref|YP_003246591.1| - 0.027 13.5 0.0 0.048 12.6 0.0 1.4 1 0 0 1 1 1 0 ER-Golgi trafficking TRAPP I complex 85 kDa subunit PelG PF16933.5 gi|261402367|ref|YP_003246591.1| - 0.11 11.3 7.9 0.39 9.5 2.7 2.0 2 0 0 2 2 2 0 Putative exopolysaccharide Exporter (EPS-E) STT3 PF02516.14 gi|261402368|ref|YP_003246592.1| - 4.1e-142 474.6 35.5 5.4e-142 474.2 35.5 1.1 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit DUF190 PF02641.15 gi|261402369|ref|YP_003246593.1| - 1.4e-28 99.1 0.0 1.6e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CRCB PF02537.15 gi|261402370|ref|YP_003246594.1| - 4.3e-26 91.1 10.5 5.1e-26 90.8 10.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF5500 PF17604.2 gi|261402370|ref|YP_003246594.1| - 0.17 12.0 0.0 0.24 11.5 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5500) Vma12 PF11712.8 gi|261402370|ref|YP_003246594.1| - 6.1 6.9 4.8 5.6 7.0 0.7 2.0 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase TP_methylase PF00590.20 gi|261402371|ref|YP_003246595.1| - 1.6e-35 123.0 0.0 1.8e-35 122.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Na_H_Exchanger PF00999.21 gi|261402372|ref|YP_003246596.1| - 1.1e-53 182.5 38.1 1.3e-53 182.2 38.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family FAD_binding_3 PF01494.19 gi|261402373|ref|YP_003246597.1| - 2.1e-12 47.0 0.3 1.5e-10 40.9 0.3 2.4 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|261402373|ref|YP_003246597.1| - 0.00042 19.5 0.0 0.0031 16.6 0.0 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|261402373|ref|YP_003246597.1| - 0.00059 18.8 0.2 0.043 12.7 0.0 2.3 2 0 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|261402373|ref|YP_003246597.1| - 0.0032 17.1 2.0 0.0073 15.9 1.9 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|261402373|ref|YP_003246597.1| - 0.021 13.6 0.5 0.035 12.8 0.5 1.3 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_2 PF07992.14 gi|261402373|ref|YP_003246597.1| - 0.059 12.6 0.4 0.099 11.9 0.4 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|261402373|ref|YP_003246597.1| - 0.063 12.5 0.3 0.12 11.6 0.3 1.5 1 0 0 1 1 1 0 Thi4 family DEAD PF00270.29 gi|261402374|ref|YP_003246598.1| - 9.3e-50 168.8 0.2 5.2e-49 166.4 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|261402374|ref|YP_003246598.1| - 2.3e-30 105.2 13.3 2.4e-29 101.9 0.2 4.0 5 0 0 5 5 5 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|261402374|ref|YP_003246598.1| - 1.6e-11 44.5 3.0 3.5e-11 43.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit CMS1 PF14617.6 gi|261402374|ref|YP_003246598.1| - 0.0002 20.8 0.0 0.0002 20.8 0.0 2.3 3 0 0 3 3 3 1 U3-containing 90S pre-ribosomal complex subunit AAA_30 PF13604.6 gi|261402374|ref|YP_003246598.1| - 0.00071 19.3 0.0 0.0048 16.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|261402374|ref|YP_003246598.1| - 0.021 15.2 0.7 0.38 11.1 0.1 2.5 1 1 1 2 2 2 0 AAA domain DUF563 PF04577.14 gi|261402374|ref|YP_003246598.1| - 0.052 13.7 0.2 12 6.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF563) Helicase_RecD PF05127.14 gi|261402374|ref|YP_003246598.1| - 0.11 12.4 1.5 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Helicase CRISPR_Cas6 PF10040.9 gi|261402375|ref|YP_003246599.1| - 0.017 15.7 0.0 0.15 12.7 0.0 2.2 2 0 0 2 2 2 0 CRISPR-associated endoribonuclease Cas6 HIPIP PF01355.17 gi|261402377|ref|YP_003246601.1| - 0.041 14.2 1.0 0.078 13.3 1.0 1.4 1 0 0 1 1 1 0 High potential iron-sulfur protein F-box_5 PF18511.1 gi|261402377|ref|YP_003246601.1| - 0.096 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 F-box AIRS_C PF02769.22 gi|261402378|ref|YP_003246602.1| - 6.5e-23 81.6 0.1 1.3e-22 80.6 0.1 1.5 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|261402378|ref|YP_003246602.1| - 5e-13 49.5 0.1 1.1e-12 48.4 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GATase PF00117.28 gi|261402379|ref|YP_003246603.1| - 8e-45 152.9 0.1 8.9e-45 152.8 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|261402379|ref|YP_003246603.1| - 6.8e-17 61.9 0.7 1.3e-14 54.5 0.3 2.6 1 1 1 2 2 2 2 Peptidase C26 MCPsignal PF00015.21 gi|261402380|ref|YP_003246604.1| - 5.6e-37 127.2 55.4 1.2e-32 113.1 16.3 5.5 2 1 4 6 6 5 4 Methyl-accepting chemotaxis protein (MCP) signalling domain PilJ PF13675.6 gi|261402380|ref|YP_003246604.1| - 6.6e-25 87.3 5.2 1.9e-21 76.2 0.0 4.7 4 1 1 5 5 5 1 Type IV pili methyl-accepting chemotaxis transducer N-term HAMP PF00672.25 gi|261402380|ref|YP_003246604.1| - 2.4e-11 43.8 3.9 8.7e-07 29.2 0.0 5.4 6 1 0 6 6 4 2 HAMP domain DUF948 PF06103.11 gi|261402380|ref|YP_003246604.1| - 1.4e-09 38.1 39.6 0.0029 17.8 4.9 7.0 4 2 2 6 6 6 4 Bacterial protein of unknown function (DUF948) Collagen_mid PF15984.5 gi|261402380|ref|YP_003246604.1| - 4.4e-08 33.1 1.3 0.0056 16.4 0.1 3.2 2 1 0 3 3 3 2 Bacterial collagen, middle region IFT57 PF10498.9 gi|261402380|ref|YP_003246604.1| - 0.00069 18.7 39.2 0.023 13.7 20.3 4.5 3 1 0 3 3 3 2 Intra-flagellar transport protein 57 NPV_P10 PF05531.12 gi|261402380|ref|YP_003246604.1| - 0.001 19.5 38.6 0.036 14.5 8.7 6.3 3 2 1 5 5 5 2 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 gi|261402380|ref|YP_003246604.1| - 0.0014 18.7 43.9 0.12 12.3 3.6 4.7 2 2 2 4 4 4 2 Laminin Domain II Fib_alpha PF08702.10 gi|261402380|ref|YP_003246604.1| - 0.0021 18.2 34.3 0.0035 17.5 6.7 5.3 1 1 4 5 5 5 2 Fibrinogen alpha/beta chain family T7SS_ESX_EspC PF10824.8 gi|261402380|ref|YP_003246604.1| - 0.0041 17.6 12.9 1.8 9.1 1.1 4.4 2 1 2 4 4 3 2 Excreted virulence factor EspC, type VII ESX diderm AAA_13 PF13166.6 gi|261402380|ref|YP_003246604.1| - 0.0042 15.8 41.7 0.0071 15.0 13.8 2.3 2 0 0 2 2 2 2 AAA domain DUF1664 PF07889.12 gi|261402380|ref|YP_003246604.1| - 0.019 15.0 41.4 0.5 10.4 5.8 6.0 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|261402380|ref|YP_003246604.1| - 0.021 14.7 32.8 0.036 13.9 0.9 6.1 7 1 0 7 7 6 0 Sec34-like family ApoLp-III PF07464.11 gi|261402380|ref|YP_003246604.1| - 0.031 14.4 46.2 0.49 10.5 5.9 6.1 3 1 2 6 6 6 0 Apolipophorin-III precursor (apoLp-III) Syntaxin-6_N PF09177.11 gi|261402380|ref|YP_003246604.1| - 0.043 14.4 30.8 0.12 12.9 2.2 6.5 2 1 3 5 5 5 0 Syntaxin 6, N-terminal Mce4_CUP1 PF11887.8 gi|261402380|ref|YP_003246604.1| - 0.056 12.9 14.4 0.13 11.7 2.5 4.2 3 1 1 5 5 5 0 Cholesterol uptake porter CUP1 of Mce4, putative COMP PF11598.8 gi|261402380|ref|YP_003246604.1| - 0.064 13.7 10.2 1.1 9.8 1.2 4.5 4 0 0 4 4 3 0 Cartilage oligomeric matrix protein MIS13 PF08202.11 gi|261402380|ref|YP_003246604.1| - 0.085 12.1 24.7 0.21 10.8 12.7 3.9 2 1 1 3 3 3 0 Mis12-Mtw1 protein family Sec8_exocyst PF04048.14 gi|261402380|ref|YP_003246604.1| - 0.09 12.7 24.6 0.35 10.7 3.4 4.8 3 2 1 4 4 4 0 Sec8 exocyst complex component specific domain DUF883 PF05957.13 gi|261402380|ref|YP_003246604.1| - 0.16 12.6 20.6 0.13 12.9 2.5 5.0 4 2 1 5 5 4 0 Bacterial protein of unknown function (DUF883) BLOC1_2 PF10046.9 gi|261402380|ref|YP_003246604.1| - 0.16 12.3 44.4 2.4 8.5 7.4 7.1 6 1 0 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SesA PF17107.5 gi|261402380|ref|YP_003246604.1| - 0.2 11.9 26.9 0.31 11.2 3.7 4.8 3 1 2 5 5 4 0 N-terminal domain on NACHT_NTPase and P-loop NTPases CheZ PF04344.13 gi|261402380|ref|YP_003246604.1| - 0.23 11.3 30.5 0.93 9.4 9.5 5.3 3 2 1 4 4 4 0 Chemotaxis phosphatase, CheZ Syntaxin_2 PF14523.6 gi|261402380|ref|YP_003246604.1| - 0.25 11.8 33.5 3.3 8.2 2.4 6.5 4 1 2 6 6 5 0 Syntaxin-like protein Peptidase_M24 PF00557.24 gi|261402380|ref|YP_003246604.1| - 0.3 10.8 4.9 1.5 8.4 0.0 3.7 2 1 2 4 4 4 0 Metallopeptidase family M24 WXG100 PF06013.12 gi|261402380|ref|YP_003246604.1| - 0.31 11.3 22.9 21 5.4 0.2 7.1 5 2 1 6 6 6 0 Proteins of 100 residues with WXG BORCS8 PF10167.9 gi|261402380|ref|YP_003246604.1| - 0.4 10.6 21.2 1.7 8.6 0.4 6.1 3 1 1 5 5 5 0 BLOC-1-related complex sub-unit 8 Rogdi_lz PF10259.9 gi|261402380|ref|YP_003246604.1| - 0.4 10.1 8.7 6.5 6.1 0.0 3.9 2 1 1 4 4 4 0 Rogdi leucine zipper containing protein PMEI PF04043.15 gi|261402380|ref|YP_003246604.1| - 0.46 10.8 7.2 2.7 8.3 0.1 3.3 2 1 0 2 2 2 0 Plant invertase/pectin methylesterase inhibitor Nup88 PF10168.9 gi|261402380|ref|YP_003246604.1| - 0.47 8.2 38.3 0.22 9.3 5.8 3.7 2 2 1 3 3 3 0 Nuclear pore component Hemerythrin PF01814.23 gi|261402380|ref|YP_003246604.1| - 0.56 10.8 5.1 25 5.5 0.2 4.2 2 1 1 3 3 3 0 Hemerythrin HHE cation binding domain DUF2524 PF10732.9 gi|261402380|ref|YP_003246604.1| - 0.79 10.1 19.8 3.6 8.0 2.4 5.1 3 2 0 4 4 4 0 Protein of unknown function (DUF2524) Laminin_I PF06008.14 gi|261402380|ref|YP_003246604.1| - 0.82 9.3 40.3 0.64 9.7 1.8 3.6 2 2 0 3 3 3 0 Laminin Domain I Tweety PF04906.13 gi|261402380|ref|YP_003246604.1| - 0.98 8.0 21.6 0.1 11.2 0.9 3.8 2 1 1 3 3 3 0 Tweety APG17 PF04108.12 gi|261402380|ref|YP_003246604.1| - 1.1 8.3 33.8 6.9 5.7 9.5 4.8 1 1 2 4 4 4 0 Autophagy protein Apg17 DUF3800 PF12686.7 gi|261402380|ref|YP_003246604.1| - 1.3 9.7 7.8 7.9e+02 0.7 7.8 3.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) ANAPC4 PF12896.7 gi|261402380|ref|YP_003246604.1| - 1.3 8.5 13.7 2.6 7.5 0.1 5.1 4 1 1 5 5 5 0 Anaphase-promoting complex, cyclosome, subunit 4 DASH_Duo1 PF08651.10 gi|261402380|ref|YP_003246604.1| - 1.3 8.9 32.0 0.35 10.7 1.3 7.2 6 2 0 7 7 6 0 DASH complex subunit Duo1 Occludin_ELL PF07303.13 gi|261402380|ref|YP_003246604.1| - 1.6 9.5 21.4 0.65 10.7 1.1 5.6 4 2 1 6 6 5 0 Occludin homology domain HD_assoc PF13286.6 gi|261402380|ref|YP_003246604.1| - 1.6 9.3 6.5 2 9.0 0.2 3.4 2 1 1 3 3 3 0 Phosphohydrolase-associated domain CHASE7 PF17151.4 gi|261402380|ref|YP_003246604.1| - 1.7 8.2 4.9 1.4 8.5 0.1 2.8 2 1 1 3 3 3 0 Periplasmic sensor domain TMPIT PF07851.13 gi|261402380|ref|YP_003246604.1| - 1.7 7.8 32.6 0.32 10.2 4.9 4.9 2 1 4 6 6 6 0 TMPIT-like protein Spc7 PF08317.11 gi|261402380|ref|YP_003246604.1| - 1.7 7.4 43.6 1.4 7.8 18.3 3.4 1 1 1 3 3 3 0 Spc7 kinetochore protein NRN1 PF15056.6 gi|261402380|ref|YP_003246604.1| - 1.8 8.7 5.5 99 3.1 0.0 4.7 5 1 1 6 6 4 0 Neuritin protein family Fez1 PF06818.15 gi|261402380|ref|YP_003246604.1| - 2.5 8.5 27.0 0.34 11.3 8.4 3.4 2 1 1 3 3 3 0 Fez1 DUF4795 PF16043.5 gi|261402380|ref|YP_003246604.1| - 2.6 7.6 41.3 1.2 8.6 5.1 5.2 1 1 3 4 4 3 0 Domain of unknown function (DUF4795) Goodbye PF17109.5 gi|261402380|ref|YP_003246604.1| - 2.8 8.4 21.4 6.3 7.3 1.9 5.3 2 2 3 5 5 4 0 fungal STAND N-terminal Goodbye domain TPR_MLP1_2 PF07926.12 gi|261402380|ref|YP_003246604.1| - 4.7 7.3 35.2 0.48 10.5 0.6 5.2 4 2 0 5 5 4 0 TPR/MLP1/MLP2-like protein FlgN PF05130.12 gi|261402380|ref|YP_003246604.1| - 5.6 7.5 29.6 3 8.3 1.3 4.8 2 1 1 4 4 4 0 FlgN protein DUF3450 PF11932.8 gi|261402380|ref|YP_003246604.1| - 5.7 6.2 35.8 0.089 12.1 3.3 5.0 2 1 3 6 6 6 0 Protein of unknown function (DUF3450) T3SSipB PF16535.5 gi|261402380|ref|YP_003246604.1| - 5.8 7.4 30.5 0.14 12.6 4.5 4.4 1 1 4 5 5 5 0 Type III cell invasion protein SipB COG5 PF10392.9 gi|261402380|ref|YP_003246604.1| - 8.4 6.6 20.6 4.5 7.5 4.3 4.8 3 1 1 4 4 4 0 Golgi transport complex subunit 5 Nup54 PF13874.6 gi|261402380|ref|YP_003246604.1| - 10 6.3 18.6 2.7 8.1 2.8 4.2 3 1 1 4 4 3 0 Nucleoporin complex subunit 54 CheW PF01584.19 gi|261402381|ref|YP_003246605.1| - 2.1e-35 121.4 0.7 2.3e-35 121.2 0.7 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 gi|261402382|ref|YP_003246606.1| - 3.3e-60 202.7 0.1 1e-59 201.1 0.0 1.8 2 1 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|261402382|ref|YP_003246606.1| - 1.6e-28 99.1 1.1 9e-27 93.5 0.6 2.8 2 1 0 2 2 2 1 Response regulator receiver domain QRPTase_C PF01729.19 gi|261402382|ref|YP_003246606.1| - 0.05 13.4 0.3 0.11 12.3 0.3 1.6 1 1 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain P2 PF07194.11 gi|261402383|ref|YP_003246607.1| - 1.7e-36 124.1 8.3 7.8e-22 77.1 1.2 4.6 6 0 0 6 6 5 2 P2 response regulator binding domain CheW PF01584.19 gi|261402383|ref|YP_003246607.1| - 5.8e-23 81.0 0.8 1.9e-22 79.4 0.8 2.0 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|261402383|ref|YP_003246607.1| - 2.7e-21 75.6 0.1 9.3e-21 73.9 0.1 2.0 1 0 0 1 1 1 1 Hpt domain HATPase_c PF02518.26 gi|261402383|ref|YP_003246607.1| - 1.4e-18 67.4 0.1 6.5e-18 65.3 0.1 2.2 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H-kinase_dim PF02895.14 gi|261402383|ref|YP_003246607.1| - 2.7e-17 62.9 3.5 2.7e-17 62.9 3.5 2.8 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|261402383|ref|YP_003246607.1| - 0.005 16.7 0.0 0.005 16.7 0.0 2.9 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MitMem_reg PF13012.6 gi|261402383|ref|YP_003246607.1| - 0.06 13.8 7.9 2.7 8.5 4.1 4.0 3 1 0 3 3 3 0 Maintenance of mitochondrial structure and function Neur_chan_memb PF02932.16 gi|261402383|ref|YP_003246607.1| - 0.19 11.8 6.2 2.1 8.4 0.4 2.4 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region DUF908 PF06012.12 gi|261402383|ref|YP_003246607.1| - 0.8 9.1 6.7 0.84 9.0 0.7 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF908) DUF913 PF06025.12 gi|261402383|ref|YP_003246607.1| - 0.85 8.5 12.4 0.2 10.6 0.4 2.8 3 0 0 3 3 3 0 Domain of Unknown Function (DUF913) GAGA_bind PF06217.12 gi|261402383|ref|YP_003246607.1| - 3.7 7.7 23.6 1.5 9.1 3.7 2.6 2 1 0 2 2 2 0 GAGA binding protein-like family Draxin PF15550.6 gi|261402383|ref|YP_003246607.1| - 4.1 7.2 15.6 0.73 9.6 4.5 2.3 2 0 0 2 2 2 0 Draxin RNA_pol_Rpc4 PF05132.14 gi|261402383|ref|YP_003246607.1| - 8.6 6.8 26.6 0.88 10.0 8.7 2.5 2 0 0 2 2 2 0 RNA polymerase III RPC4 CheD PF03975.13 gi|261402384|ref|YP_003246608.1| - 1.2e-32 112.2 0.7 1.6e-32 111.8 0.7 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction DUF389 PF04087.14 gi|261402385|ref|YP_003246609.1| - 2.2e-18 66.7 16.7 3.5e-18 66.0 13.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF389) LAGLIDADG_3 PF14528.6 gi|261402386|ref|YP_003246610.1| - 0.038 14.3 0.0 0.18 12.2 0.0 2.0 2 0 0 2 2 2 0 LAGLIDADG-like domain Zn_ribbon_SprT PF17283.2 gi|261402386|ref|YP_003246610.1| - 8.2 6.4 7.6 7 6.7 1.7 2.4 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Metallophos_2 PF12850.7 gi|261402388|ref|YP_003246612.1| - 1.3e-30 106.8 0.0 1.4e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|261402388|ref|YP_003246612.1| - 3.1e-05 24.6 5.5 0.0076 16.8 2.5 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase 3Beta_HSD PF01073.19 gi|261402388|ref|YP_003246612.1| - 0.14 11.1 0.1 0.19 10.7 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Aminotran_1_2 PF00155.21 gi|261402390|ref|YP_003246614.1| - 6.7e-61 206.5 0.0 7.7e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|261402390|ref|YP_003246614.1| - 4.9e-08 31.9 0.0 8.5e-08 31.1 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|261402390|ref|YP_003246614.1| - 0.0011 18.3 0.6 0.0094 15.3 0.6 2.0 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SHMT PF00464.19 gi|261402390|ref|YP_003246614.1| - 0.0086 14.7 0.1 0.024 13.3 0.1 1.8 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_5 PF00266.19 gi|261402390|ref|YP_003246614.1| - 0.014 14.4 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|261402390|ref|YP_003246614.1| - 0.018 14.3 0.0 0.045 13.0 0.0 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|261402390|ref|YP_003246614.1| - 0.024 13.4 0.1 0.13 10.9 0.1 1.9 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain BioW PF03744.13 gi|261402391|ref|YP_003246615.1| - 2.1e-88 296.0 1.3 2.3e-88 295.8 1.3 1.0 1 0 0 1 1 1 1 6-carboxyhexanoate--CoA ligase Radical_SAM PF04055.21 gi|261402392|ref|YP_003246616.1| - 3.1e-14 53.7 1.8 3.9e-13 50.1 1.6 2.4 1 1 1 2 2 2 1 Radical SAM superfamily BATS PF06968.13 gi|261402392|ref|YP_003246616.1| - 4.6e-12 45.9 0.0 1.2e-11 44.5 0.0 1.7 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain UPF0228 PF05727.11 gi|261402392|ref|YP_003246616.1| - 0.027 14.3 0.7 0.069 13.0 0.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0228) Radical_SAM_C PF16199.5 gi|261402392|ref|YP_003246616.1| - 0.059 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Radical_SAM C-terminal domain PHP PF02811.19 gi|261402393|ref|YP_003246617.1| - 1.5e-09 38.3 0.4 3.7e-09 37.1 0.4 1.8 1 1 0 1 1 1 1 PHP domain PGA_cap PF09587.10 gi|261402393|ref|YP_003246617.1| - 0.0026 17.3 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap RNase_P_p30 PF01876.16 gi|261402393|ref|YP_003246617.1| - 0.0043 16.5 0.2 0.0085 15.6 0.2 1.5 1 1 0 1 1 1 1 RNase P subunit p30 RgpF PF05045.12 gi|261402393|ref|YP_003246617.1| - 0.028 13.2 0.2 0.043 12.6 0.1 1.4 1 1 0 1 1 1 0 Rhamnan synthesis protein F PALP PF00291.25 gi|261402393|ref|YP_003246617.1| - 0.17 11.3 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DivIC PF04977.15 gi|261402394|ref|YP_003246618.1| - 0.009 15.8 0.2 0.0098 15.6 0.2 1.1 1 0 0 1 1 1 1 Septum formation initiator DMPK_coil PF08826.10 gi|261402394|ref|YP_003246618.1| - 0.01 15.9 2.5 0.013 15.6 2.5 1.1 1 0 0 1 1 1 0 DMPK coiled coil domain like FAM209 PF15206.6 gi|261402394|ref|YP_003246618.1| - 0.018 14.9 0.0 0.02 14.7 0.0 1.0 1 0 0 1 1 1 0 FAM209 family Phlebovirus_NSM PF07246.11 gi|261402394|ref|YP_003246618.1| - 0.034 13.5 0.4 0.037 13.4 0.4 1.0 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M MscL PF01741.18 gi|261402394|ref|YP_003246618.1| - 0.043 14.1 0.0 0.048 14.0 0.0 1.1 1 0 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL DUF1192 PF06698.11 gi|261402394|ref|YP_003246618.1| - 0.051 13.6 3.5 0.06 13.4 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) OPA3 PF07047.12 gi|261402394|ref|YP_003246618.1| - 0.057 13.2 0.1 0.072 12.9 0.1 1.0 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) HALZ PF02183.18 gi|261402394|ref|YP_003246618.1| - 0.075 13.3 5.1 0.091 13.0 5.1 1.1 1 0 0 1 1 1 0 Homeobox associated leucine zipper SUa-2TM PF18179.1 gi|261402394|ref|YP_003246618.1| - 0.12 11.6 0.1 0.12 11.6 0.1 1.1 1 0 0 1 1 1 0 SMODS- and Ubiquitin system-associated 2TM effector domain LapA_dom PF06305.11 gi|261402394|ref|YP_003246618.1| - 0.34 10.8 8.1 0.8 9.6 8.1 1.6 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain XhlA PF10779.9 gi|261402394|ref|YP_003246618.1| - 5.3 7.3 9.9 0.71 10.1 4.4 1.9 1 1 1 2 2 2 0 Haemolysin XhlA HTH_20 PF12840.7 gi|261402395|ref|YP_003246619.1| - 1.6e-11 44.1 0.1 2.7e-11 43.4 0.1 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|261402395|ref|YP_003246619.1| - 6e-08 32.4 2.2 1.1e-07 31.6 2.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|261402395|ref|YP_003246619.1| - 4.7e-05 23.5 0.2 6.6e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|261402395|ref|YP_003246619.1| - 0.00028 20.4 0.6 0.00059 19.3 0.6 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|261402395|ref|YP_003246619.1| - 0.00031 20.6 1.2 0.00033 20.5 1.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|261402395|ref|YP_003246619.1| - 0.0017 18.2 0.0 0.0022 17.9 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|261402395|ref|YP_003246619.1| - 0.015 15.2 0.1 0.026 14.4 0.1 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|261402395|ref|YP_003246619.1| - 0.019 15.3 0.1 0.031 14.6 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator Pcc1 PF09341.10 gi|261402395|ref|YP_003246619.1| - 0.038 14.1 0.1 0.81 9.9 0.1 2.1 1 1 0 1 1 1 0 Transcription factor Pcc1 HTH_11 PF08279.12 gi|261402395|ref|YP_003246619.1| - 0.048 13.6 1.1 0.15 12.0 1.0 1.9 1 1 1 2 2 2 0 HTH domain Ribosomal_L36e PF01158.18 gi|261402396|ref|YP_003246620.1| - 0.014 15.7 1.4 0.018 15.3 1.4 1.2 1 0 0 1 1 1 0 Ribosomal protein L36e DUF4404 PF14357.6 gi|261402396|ref|YP_003246620.1| - 0.028 15.1 1.3 0.034 14.8 1.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) AAA_23 PF13476.6 gi|261402396|ref|YP_003246620.1| - 0.61 10.5 7.3 0.62 10.5 7.3 1.1 1 0 0 1 1 1 0 AAA domain L_lactis_ph-MCP PF06673.11 gi|261402396|ref|YP_003246620.1| - 0.62 9.0 4.0 0.69 8.9 4.0 1.0 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major capsid protein DUF2304 PF10066.9 gi|261402397|ref|YP_003246621.1| - 9.9e-30 102.9 4.9 1.1e-29 102.8 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Polysacc_synt_3 PF13440.6 gi|261402397|ref|YP_003246621.1| - 0.0066 15.7 2.2 0.0076 15.5 2.2 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein YvrJ PF12841.7 gi|261402397|ref|YP_003246621.1| - 0.073 12.6 0.3 0.17 11.4 0.3 1.6 1 0 0 1 1 1 0 YvrJ protein family Spore_YabQ PF09578.10 gi|261402397|ref|YP_003246621.1| - 0.63 10.3 10.6 0.17 12.1 6.2 1.9 1 1 1 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) V4R PF02830.18 gi|261402398|ref|YP_003246622.1| - 5.7e-10 39.0 1.3 5.7e-10 39.0 1.3 1.8 2 0 0 2 2 2 1 V4R domain DUF2507 PF10702.9 gi|261402398|ref|YP_003246622.1| - 2.6e-06 27.4 0.0 4.8e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2507) DUF2096 PF09869.9 gi|261402399|ref|YP_003246623.1| - 1.6e-57 194.3 3.5 1.7e-57 194.1 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2096) DUF749 PF05370.11 gi|261402400|ref|YP_003246624.1| - 6.6e-33 112.7 5.9 7.4e-33 112.5 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF749) Swi5 PF07061.11 gi|261402400|ref|YP_003246624.1| - 0.019 15.0 1.2 0.028 14.5 0.4 1.6 2 0 0 2 2 2 0 Swi5 DUF3216 PF11505.8 gi|261402400|ref|YP_003246624.1| - 0.032 14.4 1.6 0.04 14.1 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) DUF2118 PF09891.9 gi|261402401|ref|YP_003246625.1| - 6.3e-53 178.8 3.5 7.1e-53 178.6 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) polyprenyl_synt PF00348.17 gi|261402402|ref|YP_003246626.1| - 1.2e-79 267.0 0.5 1.5e-79 266.7 0.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase SQS_PSY PF00494.19 gi|261402402|ref|YP_003246626.1| - 0.00069 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Squalene/phytoene synthase Terpene_synth_C PF03936.16 gi|261402402|ref|YP_003246626.1| - 0.0037 16.6 1.0 0.0079 15.6 0.0 1.9 3 0 0 3 3 3 1 Terpene synthase family, metal binding domain PNMA PF14893.6 gi|261402402|ref|YP_003246626.1| - 0.083 12.3 0.6 0.17 11.2 0.3 1.7 1 1 0 1 1 1 0 PNMA CAP_N PF01213.19 gi|261402402|ref|YP_003246626.1| - 0.14 11.6 1.1 0.45 10.0 0.1 2.3 2 1 1 3 3 3 0 Adenylate cyclase associated (CAP) N terminal Fer4_7 PF12838.7 gi|261402402|ref|YP_003246626.1| - 0.18 12.4 0.1 0.34 11.5 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Cytochrom_B562 PF07361.11 gi|261402402|ref|YP_003246626.1| - 0.37 11.5 3.2 2.1 9.1 0.6 2.6 2 0 0 2 2 2 0 Cytochrome b562 RMMBL PF07521.12 gi|261402403|ref|YP_003246627.1| - 1.7e-11 43.8 1.0 1.7e-10 40.7 0.1 2.9 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|261402403|ref|YP_003246627.1| - 1.4e-08 35.0 2.7 1.9e-08 34.5 1.2 2.1 3 1 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|261402403|ref|YP_003246627.1| - 2e-08 34.0 0.0 4e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|261402403|ref|YP_003246627.1| - 0.0085 15.2 0.1 0.013 14.6 0.1 1.2 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II FMN_dh PF01070.18 gi|261402404|ref|YP_003246628.1| - 7.4e-23 81.1 0.0 3.2e-15 56.0 0.0 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|261402404|ref|YP_003246628.1| - 9.5e-06 25.0 0.1 0.0004 19.6 0.0 2.3 2 1 0 2 2 2 2 Conserved region in glutamate synthase IMPDH PF00478.25 gi|261402404|ref|YP_003246628.1| - 4.3e-05 22.7 5.2 0.0067 15.5 0.9 3.3 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain CCG PF02754.16 gi|261402405|ref|YP_003246629.1| - 2.8e-41 139.6 3.0 1.4e-19 70.1 0.1 2.4 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|261402406|ref|YP_003246630.1| - 1.6e-10 41.2 5.8 2.9e-10 40.4 5.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402406|ref|YP_003246630.1| - 4.2e-09 36.4 17.2 7.9e-08 32.4 7.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402406|ref|YP_003246630.1| - 5.3e-09 36.5 5.6 9.2e-09 35.7 5.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402406|ref|YP_003246630.1| - 1.1e-07 31.8 7.8 3.1e-07 30.4 7.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261402406|ref|YP_003246630.1| - 2.8e-06 27.8 7.7 7e-06 26.5 7.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402406|ref|YP_003246630.1| - 2e-05 25.4 3.0 0.11 13.5 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|261402406|ref|YP_003246630.1| - 0.0039 17.3 6.4 0.0099 16.0 6.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261402406|ref|YP_003246630.1| - 0.0076 16.0 13.6 0.089 12.6 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|261402406|ref|YP_003246630.1| - 0.016 15.6 11.6 0.2 12.2 3.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261402406|ref|YP_003246630.1| - 0.068 13.3 13.4 0.38 11.0 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|261402406|ref|YP_003246630.1| - 0.11 12.3 0.4 0.11 12.3 0.4 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|261402406|ref|YP_003246630.1| - 0.23 12.5 16.6 0.56 11.3 3.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261402406|ref|YP_003246630.1| - 2.5 9.0 10.3 7 7.6 0.2 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402406|ref|YP_003246630.1| - 2.5 8.3 11.4 5.4 7.3 1.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261402406|ref|YP_003246630.1| - 4.3 7.6 8.4 4.3 7.6 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|261402407|ref|YP_003246631.1| - 1.7e-24 87.1 0.1 3.9e-24 85.9 0.1 1.7 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|261402407|ref|YP_003246631.1| - 1.1e-10 41.6 0.0 1.8e-09 37.7 0.0 2.5 2 1 0 2 2 2 1 B12 binding domain Shisa PF13908.6 gi|261402409|ref|YP_003246633.1| - 0.0013 19.0 0.5 0.0019 18.4 0.5 1.2 1 0 0 1 1 1 1 Wnt and FGF inhibitory regulator Uteroglobin PF01099.17 gi|261402409|ref|YP_003246633.1| - 0.12 12.8 2.6 16 5.9 0.1 3.2 3 0 0 3 3 3 0 Uteroglobin family DUF3439 PF11921.8 gi|261402409|ref|YP_003246633.1| - 0.16 12.0 8.6 0.28 11.2 8.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) Med3 PF11593.8 gi|261402409|ref|YP_003246633.1| - 5.9 6.0 8.5 9.2 5.3 8.5 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal HIT PF01230.23 gi|261402411|ref|YP_003246635.1| - 8.2e-33 113.1 0.1 9.9e-33 112.8 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|261402411|ref|YP_003246635.1| - 3.4e-17 63.0 0.1 4.1e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DUF420 PF04238.12 gi|261402412|ref|YP_003246636.1| - 0.0014 18.9 1.9 0.0014 18.9 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF420) CrgA PF06781.12 gi|261402412|ref|YP_003246636.1| - 0.04 14.0 2.9 0.05 13.7 2.9 1.2 1 0 0 1 1 1 0 Cell division protein CrgA OSTbeta PF15048.6 gi|261402412|ref|YP_003246636.1| - 0.22 11.7 0.3 0.28 11.3 0.3 1.3 1 0 0 1 1 1 0 Organic solute transporter subunit beta protein DUF3043 PF11241.8 gi|261402412|ref|YP_003246636.1| - 0.5 10.4 1.8 0.54 10.3 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) DUF2207 PF09972.9 gi|261402412|ref|YP_003246636.1| - 2.3 6.9 5.0 2.7 6.6 5.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) EI24 PF07264.11 gi|261402413|ref|YP_003246637.1| - 0.017 15.4 10.8 0.032 14.5 10.8 1.4 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) 7tm_7 PF08395.12 gi|261402413|ref|YP_003246637.1| - 0.02 14.1 0.0 0.024 13.8 0.0 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor Phage_holin_3_6 PF07332.11 gi|261402413|ref|YP_003246637.1| - 0.024 14.7 11.2 0.24 11.5 2.0 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III PHO4 PF01384.20 gi|261402413|ref|YP_003246637.1| - 0.086 11.9 2.2 0.12 11.4 2.2 1.2 1 0 0 1 1 1 0 Phosphate transporter family COPI_assoc PF08507.10 gi|261402413|ref|YP_003246637.1| - 0.23 11.5 12.1 0.6 10.2 1.1 2.2 2 0 0 2 2 2 0 COPI associated protein Sugar_transport PF06800.12 gi|261402413|ref|YP_003246637.1| - 0.4 10.0 10.0 0.067 12.5 1.9 2.1 1 1 1 2 2 2 0 Sugar transport protein DUF2207 PF09972.9 gi|261402413|ref|YP_003246637.1| - 2.2 7.0 17.7 0.25 10.1 3.6 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2975 PF11188.8 gi|261402413|ref|YP_003246637.1| - 2.7 7.9 13.9 4.4 7.2 1.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Metallophos PF00149.28 gi|261402414|ref|YP_003246638.1| - 6.9e-16 59.4 0.7 9.7e-16 58.9 0.7 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|261402414|ref|YP_003246638.1| - 1.8e-12 47.7 0.0 3.2e-12 46.9 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|261402414|ref|YP_003246638.1| - 1.1e-05 24.9 0.2 0.00012 21.6 0.1 2.3 1 1 1 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Lactamase_B_3 PF13483.6 gi|261402415|ref|YP_003246639.1| - 3.9e-23 82.1 0.1 5.9e-23 81.6 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|261402415|ref|YP_003246639.1| - 1.5e-21 76.9 0.0 1.8e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|261402415|ref|YP_003246639.1| - 7.1e-12 45.7 1.3 1.8e-11 44.4 1.3 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PYNP_C PF07831.13 gi|261402416|ref|YP_003246640.1| - 1e-17 63.5 0.7 1.8e-16 59.6 0.4 2.5 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_trans_3N PF02885.17 gi|261402416|ref|YP_003246640.1| - 1.8e-16 59.7 1.0 4.9e-16 58.3 0.3 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Glycos_transf_3 PF00591.21 gi|261402416|ref|YP_003246640.1| - 1.1e-15 58.0 0.1 2.3e-15 56.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Biotin_lipoyl_2 PF13533.6 gi|261402416|ref|YP_003246640.1| - 7.5e-05 22.5 0.5 0.015 15.1 0.0 3.3 3 0 0 3 3 3 1 Biotin-lipoyl like DUF2254 PF10011.9 gi|261402416|ref|YP_003246640.1| - 0.0017 17.2 0.0 0.0026 16.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Mucin_bdg PF03272.13 gi|261402416|ref|YP_003246640.1| - 0.0018 18.3 0.2 0.009 16.0 0.1 2.1 2 0 0 2 2 2 1 Putative mucin or carbohydrate-binding module Biotin_lipoyl PF00364.22 gi|261402416|ref|YP_003246640.1| - 0.0032 17.2 3.1 1 9.2 0.0 3.4 3 0 0 3 3 3 2 Biotin-requiring enzyme CDC48_N PF02359.18 gi|261402416|ref|YP_003246640.1| - 0.012 15.7 0.1 0.034 14.3 0.1 1.8 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain MazE_antitoxin PF04014.18 gi|261402416|ref|YP_003246640.1| - 0.037 14.0 0.7 0.1 12.6 0.1 2.0 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin DNA_ligase_OB PF03120.16 gi|261402416|ref|YP_003246640.1| - 0.057 13.3 0.1 2.8 7.9 0.2 3.0 2 1 1 3 3 3 0 NAD-dependent DNA ligase OB-fold domain RnfC_N PF13375.6 gi|261402416|ref|YP_003246640.1| - 1.1 9.3 3.5 2.2 8.3 0.1 2.8 2 1 1 3 3 3 0 RnfC Barrel sandwich hybrid domain MoeA_N PF03453.17 gi|261402417|ref|YP_003246641.1| - 1e-36 126.1 0.0 1.7e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|261402417|ref|YP_003246641.1| - 1.8e-30 105.5 0.0 3.3e-30 104.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|261402417|ref|YP_003246641.1| - 1.7e-16 60.1 0.0 3.7e-16 59.1 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) 7TMR-HDED PF07697.11 gi|261402417|ref|YP_003246641.1| - 9.6e-05 22.6 0.3 0.00091 19.4 0.1 2.4 3 0 0 3 3 3 1 7TM-HD extracellular DUF354 PF04007.12 gi|261402418|ref|YP_003246642.1| - 2e-161 536.7 3.7 2.3e-161 536.5 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase_2 PF02350.19 gi|261402418|ref|YP_003246642.1| - 0.00044 19.2 0.0 0.00066 18.6 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Yqai PF09466.10 gi|261402418|ref|YP_003246642.1| - 0.015 15.6 0.1 0.039 14.3 0.1 1.7 1 0 0 1 1 1 0 Hypothetical protein Yqai LpxB PF02684.15 gi|261402418|ref|YP_003246642.1| - 0.035 13.0 0.0 0.079 11.8 0.0 1.6 2 0 0 2 2 2 0 Lipid-A-disaccharide synthetase DUF357 PF04010.13 gi|261402419|ref|YP_003246643.1| - 4.5e-29 100.3 0.2 5.3e-29 100.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) PaREP1 PF05942.11 gi|261402419|ref|YP_003246643.1| - 0.031 14.2 0.0 0.88 9.5 0.0 2.1 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family TPR_1 PF00515.28 gi|261402419|ref|YP_003246643.1| - 0.095 12.6 2.3 1.1 9.2 0.7 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261402419|ref|YP_003246643.1| - 0.12 12.6 2.8 7.9 7.0 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Ribosomal_S8e PF01201.22 gi|261402420|ref|YP_003246644.1| - 3e-37 127.8 3.8 3.6e-37 127.6 3.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Ntox46 PF15538.6 gi|261402420|ref|YP_003246644.1| - 0.052 13.5 0.0 0.066 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial toxin 46 TrkA_N PF02254.18 gi|261402421|ref|YP_003246645.1| - 2.5e-33 114.8 0.4 4.6e-33 113.9 0.1 1.6 2 0 0 2 2 2 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|261402421|ref|YP_003246645.1| - 1.7e-16 59.9 12.7 3e-16 59.1 12.7 1.4 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|261402421|ref|YP_003246645.1| - 6.2e-15 54.8 0.0 1.1e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 TrkA-C domain Ion_trans PF00520.31 gi|261402421|ref|YP_003246645.1| - 0.00025 20.4 6.6 0.00044 19.6 6.6 1.4 1 0 0 1 1 1 1 Ion transport protein Sacchrp_dh_NADP PF03435.18 gi|261402421|ref|YP_003246645.1| - 0.041 14.2 0.2 0.41 10.9 0.0 2.2 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|261402421|ref|YP_003246645.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding Methyltransf_25 PF13649.6 gi|261402421|ref|YP_003246645.1| - 0.11 13.2 0.0 0.33 11.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Ion_trans PF00520.31 gi|261402422|ref|YP_003246646.1| - 1.4e-17 63.7 28.3 3.7e-17 62.4 28.3 1.6 1 1 0 1 1 1 1 Ion transport protein Ion_trans_2 PF07885.16 gi|261402422|ref|YP_003246646.1| - 6.4e-16 58.1 7.2 6.4e-16 58.1 7.2 2.8 1 1 2 3 3 3 1 Ion channel HlyIII PF03006.20 gi|261402422|ref|YP_003246646.1| - 6.4 6.4 15.0 0.7 9.6 3.1 2.3 1 1 1 2 2 2 0 Haemolysin-III related AAA_26 PF13500.6 gi|261402423|ref|YP_003246647.1| - 7.2e-11 42.3 4.7 4e-08 33.3 0.1 2.7 3 0 0 3 3 3 2 AAA domain GATase_3 PF07685.14 gi|261402423|ref|YP_003246647.1| - 1.8e-10 40.7 0.0 3.3e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|261402423|ref|YP_003246647.1| - 2e-05 24.7 0.7 3.9e-05 23.7 0.1 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|261402423|ref|YP_003246647.1| - 0.00021 21.2 0.2 0.00067 19.5 0.1 1.9 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Zeta_toxin PF06414.12 gi|261402423|ref|YP_003246647.1| - 0.0065 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin GATase_5 PF13507.6 gi|261402423|ref|YP_003246647.1| - 0.013 14.6 0.0 0.096 11.8 0.0 2.2 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|261402423|ref|YP_003246647.1| - 0.024 14.4 0.0 0.094 12.5 0.0 1.9 2 0 0 2 2 2 0 DJ-1/PfpI family GATase PF00117.28 gi|261402423|ref|YP_003246647.1| - 0.027 14.2 0.3 0.06 13.1 0.1 1.8 1 1 1 2 2 2 0 Glutamine amidotransferase class-I Tae4 PF14113.6 gi|261402423|ref|YP_003246647.1| - 0.091 13.0 0.8 0.2 11.9 0.8 1.5 1 0 0 1 1 1 0 Type VI secretion system (T6SS), amidase effector protein 4 DUF373 PF04123.13 gi|261402424|ref|YP_003246648.1| - 1.7e-85 287.5 14.8 2e-85 287.2 14.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Phage_holin_5_2 PF16079.5 gi|261402424|ref|YP_003246648.1| - 0.047 14.0 1.0 0.047 14.0 1.0 3.1 3 1 0 3 3 3 0 Phage holin family Hol44, in holin superfamily V CorA PF01544.18 gi|261402425|ref|YP_003246649.1| - 2.6e-67 227.2 8.8 2.9e-67 227.0 8.8 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein Internalin_N PF12354.8 gi|261402425|ref|YP_003246649.1| - 0.079 13.0 0.6 0.079 13.0 0.6 2.1 2 0 0 2 2 2 0 Bacterial adhesion/invasion protein N terminal SRP19 PF01922.17 gi|261402426|ref|YP_003246650.1| - 1.6e-22 80.2 0.8 1.9e-22 80.0 0.8 1.1 1 0 0 1 1 1 1 SRP19 protein DUF2863 PF11062.8 gi|261402426|ref|YP_003246650.1| - 0.087 11.2 0.0 0.095 11.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) MTD PF01993.18 gi|261402427|ref|YP_003246651.1| - 2.7e-140 466.4 5.3 3.1e-140 466.2 5.3 1.0 1 0 0 1 1 1 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Bac_DNA_binding PF00216.21 gi|261402427|ref|YP_003246651.1| - 0.024 14.8 0.3 0.087 13.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial DNA-binding protein Zip PF02535.22 gi|261402428|ref|YP_003246652.1| - 2e-16 60.1 18.7 5.8e-16 58.6 5.1 2.4 1 1 1 2 2 2 2 ZIP Zinc transporter TauE PF01925.19 gi|261402428|ref|YP_003246652.1| - 0.0093 15.6 14.2 0.01 15.5 8.9 2.2 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE Halogen_Hydrol PF10112.9 gi|261402428|ref|YP_003246652.1| - 9.3 6.2 7.3 1.7 8.6 0.9 2.4 2 1 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF3882 PF07066.11 gi|261402429|ref|YP_003246653.1| - 0.13 12.3 5.4 2.5 8.1 0.3 2.8 1 1 2 3 3 3 0 Lactococcus phage M3 protein Radical_SAM PF04055.21 gi|261402430|ref|YP_003246654.1| - 1.2e-21 77.8 2.4 7.1e-20 72.0 2.4 2.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|261402430|ref|YP_003246654.1| - 0.11 12.2 3.2 1 9.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Intein_splicing PF14890.6 gi|261402431|ref|YP_003246655.1| - 1.6e-09 37.8 3.5 2.2e-06 27.7 0.0 3.0 3 1 0 3 3 3 2 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|261402431|ref|YP_003246655.1| - 0.00031 21.0 0.2 0.0069 16.7 0.1 2.8 3 0 0 3 3 2 1 LAGLIDADG-like domain PHP_C PF13263.6 gi|261402431|ref|YP_003246655.1| - 0.0036 17.0 0.0 0.0078 15.9 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PT-HINT PF07591.11 gi|261402431|ref|YP_003246655.1| - 0.005 17.1 0.5 0.79 10.0 0.1 2.7 2 0 0 2 2 2 1 Pretoxin HINT domain HypA PF01155.19 gi|261402431|ref|YP_003246655.1| - 0.0091 16.0 0.1 0.024 14.6 0.1 1.7 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PHP PF02811.19 gi|261402431|ref|YP_003246655.1| - 0.011 16.1 0.0 0.026 14.8 0.0 1.7 1 0 0 1 1 1 0 PHP domain EntA_Immun PF08951.10 gi|261402431|ref|YP_003246655.1| - 0.028 14.8 0.2 0.12 12.8 0.2 2.1 1 0 0 1 1 1 0 Enterocin A Immunity Hint_2 PF13403.6 gi|261402431|ref|YP_003246655.1| - 0.028 14.7 0.0 0.06 13.6 0.0 1.6 1 0 0 1 1 1 0 Hint domain DUF4379 PF14311.6 gi|261402431|ref|YP_003246655.1| - 0.029 14.7 0.8 0.16 12.4 0.8 2.3 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Tox-REase-9 PF15650.6 gi|261402431|ref|YP_003246655.1| - 0.043 14.1 0.1 0.15 12.3 0.1 1.9 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 9 zinc_ribbon_5 PF13719.6 gi|261402431|ref|YP_003246655.1| - 0.063 13.1 3.2 0.15 11.8 3.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|261402431|ref|YP_003246655.1| - 0.065 13.0 1.2 0.2 11.4 1.0 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|261402431|ref|YP_003246655.1| - 0.065 13.4 0.8 0.16 12.1 0.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|261402431|ref|YP_003246655.1| - 0.065 13.2 6.6 0.055 13.4 2.4 2.7 2 0 0 2 2 2 0 zinc-ribbon domain DUF272 PF03312.15 gi|261402431|ref|YP_003246655.1| - 0.2 11.9 4.4 3.3 8.0 0.1 3.7 3 1 0 4 4 4 0 Protein of unknown function (DUF272) AA_kinase PF00696.28 gi|261402432|ref|YP_003246656.1| - 5.6e-43 147.3 0.0 6.3e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Thioredoxin_12 PF18400.1 gi|261402432|ref|YP_003246656.1| - 0.23 11.3 0.0 0.49 10.2 0.0 1.5 2 0 0 2 2 2 0 Thioredoxin-like domain Terminase_3 PF04466.13 gi|261402433|ref|YP_003246657.1| - 0.0075 15.8 2.6 0.013 15.1 2.6 1.3 1 0 0 1 1 1 1 Phage terminase large subunit DUF2113 PF09886.9 gi|261402434|ref|YP_003246658.1| - 1.8e-50 170.8 5.3 2.2e-50 170.6 5.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2113) DUF3445 PF11927.8 gi|261402434|ref|YP_003246658.1| - 0.062 12.9 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3445) RNase_H2-Ydr279 PF09468.10 gi|261402434|ref|YP_003246658.1| - 0.083 13.1 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) wHTH domain Ribosomal_S13 PF00416.22 gi|261402434|ref|YP_003246658.1| - 0.1 13.0 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S13/S18 ATPase_2 PF01637.18 gi|261402435|ref|YP_003246659.1| - 3.1e-91 305.5 10.2 3.6e-91 305.2 10.2 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|261402435|ref|YP_003246659.1| - 1.9e-10 41.4 0.0 4.5e-10 40.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|261402435|ref|YP_003246659.1| - 2.7e-10 40.4 6.8 4.3e-05 23.6 0.7 2.6 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|261402435|ref|YP_003246659.1| - 3.2e-05 24.2 0.1 0.00013 22.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|261402435|ref|YP_003246659.1| - 5.8e-05 23.5 0.2 0.0085 16.5 0.1 2.7 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_35 PF14516.6 gi|261402435|ref|YP_003246659.1| - 0.00024 20.0 1.1 0.03 13.2 0.6 2.7 2 1 0 2 2 2 1 AAA-like domain Elong_Iki1 PF10483.9 gi|261402435|ref|YP_003246659.1| - 0.0027 17.2 0.1 0.02 14.4 0.1 1.9 1 1 0 1 1 1 1 Elongator subunit Iki1 AAA_7 PF12775.7 gi|261402435|ref|YP_003246659.1| - 0.0048 16.4 0.0 0.0098 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region MobB PF03205.14 gi|261402435|ref|YP_003246659.1| - 0.013 15.4 0.0 0.15 12.0 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Bac_DnaA PF00308.18 gi|261402435|ref|YP_003246659.1| - 0.033 14.0 0.5 0.033 14.0 0.5 1.9 1 1 1 2 2 2 0 Bacterial dnaA protein TniB PF05621.11 gi|261402435|ref|YP_003246659.1| - 0.035 13.5 0.1 2.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|261402435|ref|YP_003246659.1| - 0.06 12.5 0.0 0.18 11.0 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain cobW PF02492.19 gi|261402435|ref|YP_003246659.1| - 0.13 11.9 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF4065 PF13274.6 gi|261402435|ref|YP_003246659.1| - 0.54 11.2 4.4 1.4 9.8 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4065) TetR_C_8 PF14278.6 gi|261402435|ref|YP_003246659.1| - 0.65 10.1 8.7 5.5 7.2 0.0 4.0 3 1 1 4 4 4 0 Transcriptional regulator C-terminal region BcrAD_BadFG PF01869.20 gi|261402436|ref|YP_003246660.1| - 4.4e-65 219.8 7.1 5.9e-65 219.4 7.1 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Peptidase_M22 PF00814.25 gi|261402436|ref|YP_003246660.1| - 0.0013 18.4 0.0 0.5 10.0 0.0 2.4 2 0 0 2 2 2 2 Glycoprotease family FtsA PF14450.6 gi|261402436|ref|YP_003246660.1| - 0.017 15.5 2.5 0.35 11.3 2.5 2.7 1 1 0 1 1 1 0 Cell division protein FtsA FGGY_N PF00370.21 gi|261402436|ref|YP_003246660.1| - 0.12 11.9 0.3 8.6 5.8 0.0 2.3 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain Hydant_A_N PF05378.13 gi|261402436|ref|YP_003246660.1| - 0.75 9.5 8.9 0.13 11.9 2.0 2.7 3 1 0 3 3 3 0 Hydantoinase/oxoprolinase N-terminal region AIRS_C PF02769.22 gi|261402437|ref|YP_003246661.1| - 3.8e-10 40.1 0.0 2.3e-09 37.6 0.0 2.2 1 1 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|261402437|ref|YP_003246661.1| - 4.6e-10 40.0 0.2 7.8e-10 39.3 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TPR_8 PF13181.6 gi|261402438|ref|YP_003246662.1| - 0.016 15.4 3.1 1.8 9.0 0.5 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|261402438|ref|YP_003246662.1| - 0.05 13.7 1.0 6.3 7.2 0.4 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|261402438|ref|YP_003246662.1| - 0.051 13.4 1.1 9.7 6.2 0.1 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat MacB_PCD PF12704.7 gi|261402440|ref|YP_003246664.1| - 2.1e-16 60.8 0.1 2.1e-16 60.8 0.1 2.1 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|261402440|ref|YP_003246664.1| - 7e-13 48.9 8.4 7e-13 48.9 8.4 2.9 3 0 0 3 3 3 1 FtsX-like permease family EI24 PF07264.11 gi|261402440|ref|YP_003246664.1| - 0.029 14.6 3.0 0.032 14.5 1.9 1.9 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF4191 PF13829.6 gi|261402440|ref|YP_003246664.1| - 0.46 9.8 7.4 1.8 7.9 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4191) ZYG-11_interact PF05884.12 gi|261402441|ref|YP_003246665.1| - 0.013 14.9 0.4 0.013 14.9 0.4 2.1 2 0 0 2 2 2 0 Interactor of ZYG-11 Peptidase_U4 PF03419.13 gi|261402441|ref|YP_003246665.1| - 1.7 7.9 13.5 2.4 7.4 13.5 1.4 1 1 0 1 1 1 0 Sporulation factor SpoIIGA RseC_MucC PF04246.12 gi|261402441|ref|YP_003246665.1| - 1.7 8.6 4.1 1.4 8.9 2.6 1.6 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC ABC_tran PF00005.27 gi|261402442|ref|YP_003246666.1| - 2.3e-37 128.5 0.1 3.8e-37 127.9 0.0 1.3 2 0 0 2 2 1 1 ABC transporter SMC_N PF02463.19 gi|261402442|ref|YP_003246666.1| - 1.6e-08 34.3 1.7 7.7e-07 28.8 1.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|261402442|ref|YP_003246666.1| - 4.9e-07 29.8 0.0 0.003 17.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|261402442|ref|YP_003246666.1| - 4.9e-05 23.8 0.1 0.00013 22.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|261402442|ref|YP_003246666.1| - 0.00021 21.3 0.2 0.0017 18.4 0.2 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|261402442|ref|YP_003246666.1| - 0.00056 19.6 0.1 0.00095 18.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|261402442|ref|YP_003246666.1| - 0.001 18.9 0.1 0.011 15.5 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|261402442|ref|YP_003246666.1| - 0.0022 18.6 0.2 0.01 16.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|261402442|ref|YP_003246666.1| - 0.0027 17.6 0.1 0.0064 16.4 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|261402442|ref|YP_003246666.1| - 0.03 14.0 0.0 0.4 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|261402442|ref|YP_003246666.1| - 0.05 12.7 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit IstB_IS21 PF01695.17 gi|261402442|ref|YP_003246666.1| - 0.051 13.3 0.0 3.2 7.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein PIN_4 PF13638.6 gi|261402442|ref|YP_003246666.1| - 0.072 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 PIN domain Rad17 PF03215.15 gi|261402442|ref|YP_003246666.1| - 0.08 12.9 0.1 0.13 12.1 0.1 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|261402442|ref|YP_003246666.1| - 0.092 12.5 0.0 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|261402442|ref|YP_003246666.1| - 0.11 12.8 0.8 0.48 10.7 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|261402442|ref|YP_003246666.1| - 0.11 12.9 0.4 3.8 7.9 0.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|261402442|ref|YP_003246666.1| - 0.12 11.9 0.1 0.55 9.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|261402442|ref|YP_003246666.1| - 0.13 12.4 1.2 0.83 9.8 1.2 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|261402442|ref|YP_003246666.1| - 0.13 12.7 0.3 0.13 12.7 0.3 2.4 2 1 0 2 2 2 0 AAA domain CRF-BP PF05428.11 gi|261402442|ref|YP_003246666.1| - 0.25 10.1 0.8 8.9 5.0 0.0 2.4 3 0 0 3 3 3 0 Corticotropin-releasing factor binding protein (CRF-BP) Yip1 PF04893.17 gi|261402443|ref|YP_003246667.1| - 2.4e-14 53.4 20.9 2.9e-14 53.2 20.9 1.1 1 0 0 1 1 1 1 Yip1 domain DUF417 PF04224.12 gi|261402444|ref|YP_003246668.1| - 0.024 14.2 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Imm31 PF15591.6 gi|261402444|ref|YP_003246668.1| - 0.035 14.0 0.5 0.19 11.6 0.1 2.0 2 1 0 2 2 2 0 Immunity protein 31 CmlA_N PF18456.1 gi|261402445|ref|YP_003246669.1| - 0.032 13.6 0.1 0.044 13.1 0.1 1.1 1 0 0 1 1 1 0 Diiron non-heme beta-hydroxylase N-terminal domain Fib_alpha PF08702.10 gi|261402445|ref|YP_003246669.1| - 0.13 12.4 0.4 0.19 11.9 0.4 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family TRAP_beta PF05753.14 gi|261402446|ref|YP_003246670.1| - 0.0031 16.9 1.1 0.1 12.0 0.6 2.8 3 0 0 3 3 3 1 Translocon-associated protein beta (TRAPB) Orf78 PF06024.12 gi|261402446|ref|YP_003246670.1| - 0.048 14.0 0.1 0.048 14.0 0.1 2.6 3 0 0 3 3 3 0 Orf78 (ac78) Gemini_mov PF01708.16 gi|261402446|ref|YP_003246670.1| - 0.14 11.9 0.0 0.43 10.4 0.0 1.8 2 0 0 2 2 2 0 Geminivirus putative movement protein Thioredoxin_9 PF14595.6 gi|261402446|ref|YP_003246670.1| - 0.37 10.6 1.9 5 6.9 0.1 2.9 3 0 0 3 3 3 0 Thioredoxin Yip1 PF04893.17 gi|261402447|ref|YP_003246671.1| - 2.1e-34 118.7 16.5 2.6e-34 118.4 16.5 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|261402447|ref|YP_003246671.1| - 9e-09 35.3 17.2 2.4e-08 33.9 17.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1282) Colicin_V PF02674.16 gi|261402447|ref|YP_003246671.1| - 0.54 10.2 14.1 0.1 12.6 9.2 2.1 1 1 1 2 2 2 0 Colicin V production protein SpoIIM PF01944.17 gi|261402448|ref|YP_003246672.1| - 1.4e-33 116.1 17.5 1.7e-33 115.8 17.5 1.0 1 0 0 1 1 1 1 Stage II sporulation protein M DUF1129 PF06570.11 gi|261402448|ref|YP_003246672.1| - 0.091 12.2 5.8 0.25 10.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) FtsX PF02687.21 gi|261402448|ref|YP_003246672.1| - 1.5 9.3 15.3 0.63 10.6 3.4 2.5 1 1 1 2 2 2 0 FtsX-like permease family MpPF26 PF07666.11 gi|261402448|ref|YP_003246672.1| - 8.4 6.5 23.4 10 6.2 17.5 2.8 1 1 1 2 2 2 0 M penetrans paralogue family 26 ATP-synt_Z PF16594.5 gi|261402450|ref|YP_003246674.1| - 4.2 6.9 6.4 2.6 7.6 0.5 2.5 2 1 0 2 2 2 0 Putative AtpZ or ATP-synthase-associated SpoIIM PF01944.17 gi|261402451|ref|YP_003246675.1| - 6.7e-05 23.0 4.5 8.5e-05 22.6 4.5 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M HicA_toxin PF07927.12 gi|261402451|ref|YP_003246675.1| - 0.0015 18.5 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, FtsX PF02687.21 gi|261402451|ref|YP_003246675.1| - 0.027 15.0 1.4 0.036 14.5 1.4 1.2 1 0 0 1 1 1 0 FtsX-like permease family 4HB_MCP_1 PF12729.7 gi|261402451|ref|YP_003246675.1| - 0.027 14.0 0.9 0.04 13.5 0.9 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction DUF5336 PF17270.2 gi|261402451|ref|YP_003246675.1| - 0.052 13.2 0.1 0.063 12.9 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) DUF4131 PF13567.6 gi|261402452|ref|YP_003246676.1| - 2.2 7.9 4.9 4.7 6.8 1.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) RseC_MucC PF04246.12 gi|261402452|ref|YP_003246676.1| - 3 7.8 6.2 0.97 9.4 2.0 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC TssN PF17555.2 gi|261402452|ref|YP_003246676.1| - 3.1 7.1 17.4 3.8 6.8 17.4 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF2070 PF09843.9 gi|261402452|ref|YP_003246676.1| - 8.5 4.5 15.9 9.4 4.4 15.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4006 PF13179.6 gi|261402453|ref|YP_003246677.1| - 0.18 11.8 1.5 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF4006) ATPase_2 PF01637.18 gi|261402454|ref|YP_003246678.1| - 4.3e-88 295.2 7.1 4.3e-88 295.2 7.1 1.6 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|261402454|ref|YP_003246678.1| - 3.6e-08 33.5 6.1 0.00046 20.2 0.2 3.1 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|261402454|ref|YP_003246678.1| - 1.4e-07 32.1 0.0 7.4e-07 29.7 0.0 2.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|261402454|ref|YP_003246678.1| - 2.1e-05 24.8 0.0 0.00019 21.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.15 gi|261402454|ref|YP_003246678.1| - 0.0011 17.8 0.0 0.053 12.3 0.0 2.5 2 0 0 2 2 2 1 Adenovirus IVa2 protein TK PF00265.18 gi|261402454|ref|YP_003246678.1| - 0.0035 17.2 0.0 0.0095 15.8 0.0 1.7 1 0 0 1 1 1 1 Thymidine kinase AAA_7 PF12775.7 gi|261402454|ref|YP_003246678.1| - 0.0081 15.7 0.0 0.023 14.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|261402454|ref|YP_003246678.1| - 0.01 15.9 0.0 0.033 14.3 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF2624 PF11116.8 gi|261402454|ref|YP_003246678.1| - 0.027 15.3 0.3 0.087 13.7 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2624) AAA PF00004.29 gi|261402454|ref|YP_003246678.1| - 0.029 14.8 0.1 0.86 10.0 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|261402454|ref|YP_003246678.1| - 0.032 14.0 2.4 0.081 12.6 2.3 1.9 1 1 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|261402454|ref|YP_003246678.1| - 0.04 12.7 0.1 0.17 10.6 0.0 1.9 2 0 0 2 2 2 0 RNA12 protein Roc PF08477.13 gi|261402454|ref|YP_003246678.1| - 0.045 14.0 0.0 0.097 12.9 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|261402454|ref|YP_003246678.1| - 0.08 12.1 0.0 0.94 8.6 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_29 PF13555.6 gi|261402454|ref|YP_003246678.1| - 0.14 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|261402454|ref|YP_003246678.1| - 0.4 11.2 12.7 25 5.3 12.7 2.7 1 1 0 1 1 1 0 AAA domain BaxI_1 PF12811.7 gi|261402455|ref|YP_003246679.1| - 1.6e-53 181.6 25.0 1.8e-53 181.5 25.0 1.0 1 0 0 1 1 1 1 Bax inhibitor 1 like Polysacc_synt_C PF14667.6 gi|261402455|ref|YP_003246679.1| - 0.83 9.7 26.5 0.14 12.2 12.2 2.3 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF5367 PF17329.2 gi|261402455|ref|YP_003246679.1| - 6.2 7.0 24.5 0.51 10.5 7.9 3.4 1 1 1 3 3 3 0 Family of unknown function (DUF5367) YwiC PF14256.6 gi|261402456|ref|YP_003246680.1| - 0.0069 16.7 2.9 0.0078 16.5 2.9 1.0 1 0 0 1 1 1 1 YwiC-like protein 7tm_1 PF00001.21 gi|261402456|ref|YP_003246680.1| - 0.8 9.0 6.3 0.22 10.8 0.7 1.9 1 1 1 2 2 2 0 7 transmembrane receptor (rhodopsin family) Tmemb_9 PF05434.11 gi|261402456|ref|YP_003246680.1| - 2.2 8.1 6.2 2.6 7.9 6.2 1.3 1 0 0 1 1 1 0 TMEM9 DUF2207 PF09972.9 gi|261402456|ref|YP_003246680.1| - 3.3 6.4 5.6 3.4 6.3 5.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SNARE PF05739.19 gi|261402456|ref|YP_003246680.1| - 6.2 6.9 10.8 0.21 11.6 4.9 1.6 2 0 0 2 2 2 0 SNARE domain Orf78 PF06024.12 gi|261402456|ref|YP_003246680.1| - 7.2 7.0 14.9 0.47 10.8 4.4 2.1 1 1 1 2 2 2 0 Orf78 (ac78) Stevor PF17410.2 gi|261402457|ref|YP_003246681.1| - 4.4 6.8 8.8 9.6 5.7 8.9 1.5 1 1 1 2 2 2 0 Subtelomeric Variable Open Reading frame Herpes_LMP1 PF05297.11 gi|261402457|ref|YP_003246681.1| - 5.8 6.0 6.2 6.4 5.9 6.2 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF1201 PF06716.11 gi|261402458|ref|YP_003246682.1| - 2.5 8.2 15.1 4.8 7.3 5.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1201) DUF2070 PF09843.9 gi|261402458|ref|YP_003246682.1| - 3.8 5.7 10.9 4.1 5.6 10.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ATPase_2 PF01637.18 gi|261402459|ref|YP_003246683.1| - 2.5e-81 273.0 5.7 2.5e-81 273.0 5.7 1.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|261402459|ref|YP_003246683.1| - 6e-09 36.0 5.8 1.2e-05 25.4 0.1 3.1 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|261402459|ref|YP_003246683.1| - 3.5e-07 30.8 0.0 8.4e-07 29.5 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|261402459|ref|YP_003246683.1| - 1.1e-05 25.7 0.0 4e-05 23.9 0.0 2.0 2 1 1 3 3 3 1 AAA domain AAA_35 PF14516.6 gi|261402459|ref|YP_003246683.1| - 0.00052 18.9 0.1 0.15 10.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain cobW PF02492.19 gi|261402459|ref|YP_003246683.1| - 0.00069 19.2 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|261402459|ref|YP_003246683.1| - 0.0042 17.2 0.1 0.013 15.6 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|261402459|ref|YP_003246683.1| - 0.0096 15.1 0.0 0.018 14.2 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.29 gi|261402459|ref|YP_003246683.1| - 0.016 15.6 0.5 0.21 12.0 0.1 2.7 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NAD_binding_6 PF08030.12 gi|261402459|ref|YP_003246683.1| - 0.033 14.3 0.1 0.057 13.5 0.1 1.4 1 0 0 1 1 1 0 Ferric reductase NAD binding domain TsaE PF02367.17 gi|261402459|ref|YP_003246683.1| - 0.041 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|261402459|ref|YP_003246683.1| - 0.042 14.2 1.2 0.17 12.3 0.0 2.6 3 0 0 3 3 2 0 RNA helicase TK PF00265.18 gi|261402459|ref|YP_003246683.1| - 0.082 12.8 0.1 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 Thymidine kinase KAP_NTPase PF07693.14 gi|261402459|ref|YP_003246683.1| - 0.11 11.7 1.7 0.26 10.5 1.7 2.0 1 1 0 1 1 1 0 KAP family P-loop domain NACHT PF05729.12 gi|261402459|ref|YP_003246683.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 NACHT domain AAA_19 PF13245.6 gi|261402459|ref|YP_003246683.1| - 0.15 12.4 0.0 1.9 8.8 0.0 2.6 2 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|261402459|ref|YP_003246683.1| - 0.28 10.6 1.6 0.76 9.2 0.0 2.3 3 0 0 3 3 3 0 Bacterial TniB protein PIG-Y PF15159.6 gi|261402460|ref|YP_003246684.1| - 4.5 8.3 8.4 0.76 10.7 3.6 1.9 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y PPK2 PF03976.14 gi|261402461|ref|YP_003246685.1| - 0.086 12.3 0.1 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) DUF1858 PF08984.11 gi|261402461|ref|YP_003246685.1| - 0.11 12.7 0.0 0.45 10.7 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1858) DUF5367 PF17329.2 gi|261402462|ref|YP_003246686.1| - 0.0062 16.6 3.4 0.0062 16.6 3.4 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF5367) Acyl_transf_3 PF01757.22 gi|261402462|ref|YP_003246686.1| - 0.015 14.3 5.4 0.02 14.0 5.4 1.2 1 0 0 1 1 1 0 Acyltransferase family DUF4131 PF13567.6 gi|261402462|ref|YP_003246686.1| - 0.08 12.6 1.3 0.12 12.0 0.5 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HECT PF00632.25 gi|261402462|ref|YP_003246686.1| - 0.11 12.0 0.5 0.12 11.8 0.5 1.1 1 0 0 1 1 1 0 HECT-domain (ubiquitin-transferase) ATPase_gene1 PF09527.10 gi|261402462|ref|YP_003246686.1| - 0.3 11.3 6.9 5.3 7.3 0.1 2.8 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter TMEM72 PF16054.5 gi|261402462|ref|YP_003246686.1| - 3.9 7.1 9.0 0.92 9.2 0.5 2.4 1 1 1 2 2 2 0 Transmembrane protein family 72 AAA_11 PF13086.6 gi|261402463|ref|YP_003246687.1| - 1.4e-59 202.1 0.4 1.4e-59 202.1 0.4 1.7 2 0 0 2 2 2 1 AAA domain AAA_12 PF13087.6 gi|261402463|ref|YP_003246687.1| - 7.2e-56 189.0 3.0 7.2e-56 189.0 3.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|261402463|ref|YP_003246687.1| - 1.9e-11 44.0 0.0 2.7e-08 33.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|261402463|ref|YP_003246687.1| - 1.1e-08 35.6 0.0 5.2e-08 33.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|261402463|ref|YP_003246687.1| - 2.9e-06 27.2 0.0 1.3 8.7 0.0 3.2 2 1 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Helicase_RecD PF05127.14 gi|261402463|ref|YP_003246687.1| - 0.00023 21.1 0.1 0.0042 16.9 0.0 2.8 3 0 0 3 3 3 1 Helicase AAA PF00004.29 gi|261402463|ref|YP_003246687.1| - 0.00035 21.0 0.6 0.023 15.1 0.0 3.0 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) PIF1 PF05970.14 gi|261402463|ref|YP_003246687.1| - 0.00037 19.8 0.3 0.14 11.3 0.0 2.5 2 1 0 2 2 2 2 PIF1-like helicase ResIII PF04851.15 gi|261402463|ref|YP_003246687.1| - 0.00049 20.1 0.0 0.0057 16.7 0.0 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|261402463|ref|YP_003246687.1| - 0.00057 20.2 0.0 0.0028 17.9 0.0 2.2 2 0 0 2 2 1 1 AAA domain UvrD-helicase PF00580.21 gi|261402463|ref|YP_003246687.1| - 0.00061 19.4 7.3 0.0045 16.5 0.0 2.7 2 1 1 3 3 3 2 UvrD/REP helicase N-terminal domain T2SSE PF00437.20 gi|261402463|ref|YP_003246687.1| - 0.0024 17.0 0.0 0.0051 15.9 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.29 gi|261402463|ref|YP_003246687.1| - 0.0035 17.1 2.2 0.055 13.2 0.1 3.0 2 1 1 3 3 3 1 DEAD/DEAH box helicase RuvB_N PF05496.12 gi|261402463|ref|YP_003246687.1| - 0.0045 16.7 0.1 0.018 14.8 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|261402463|ref|YP_003246687.1| - 0.011 15.0 0.1 0.22 10.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.6 gi|261402463|ref|YP_003246687.1| - 0.013 15.3 0.1 0.065 13.1 0.0 2.2 2 0 0 2 2 2 0 UvrD-like helicase C-terminal domain TPR_6 PF13174.6 gi|261402463|ref|YP_003246687.1| - 0.013 16.0 0.2 2.6 8.9 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_16 PF13191.6 gi|261402463|ref|YP_003246687.1| - 0.014 15.8 0.0 0.034 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|261402463|ref|YP_003246687.1| - 0.072 13.6 1.6 1.5 9.3 0.0 3.6 3 1 1 4 4 4 0 AAA domain Mod_r PF07200.13 gi|261402463|ref|YP_003246687.1| - 0.096 12.8 2.5 0.3 11.2 2.5 1.9 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF2183 PF09949.9 gi|261402463|ref|YP_003246687.1| - 0.11 12.9 2.9 37 4.8 0.0 4.2 4 0 0 4 4 4 0 Uncharacterized conserved protein (DUF2183) AAA_25 PF13481.6 gi|261402463|ref|YP_003246687.1| - 0.18 11.4 0.0 3.2 7.3 0.0 2.6 3 0 0 3 3 3 0 AAA domain GluRS_N PF18466.1 gi|261402463|ref|YP_003246687.1| - 0.77 10.2 5.6 11 6.5 0.1 3.6 3 0 0 3 3 3 0 Glutamate--tRNA ligase N-terminal domain Radical_SAM PF04055.21 gi|261402464|ref|YP_003246688.1| - 2.7e-24 86.4 0.0 6.2e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|261402464|ref|YP_003246688.1| - 0.00093 19.3 0.1 0.0046 17.1 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain UPF0020 PF01170.18 gi|261402465|ref|YP_003246689.1| - 0.027 14.2 0.0 0.027 14.2 0.0 1.1 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 N6_Mtase PF02384.16 gi|261402465|ref|YP_003246689.1| - 0.054 12.8 0.0 0.054 12.8 0.0 1.0 1 0 0 1 1 1 0 N-6 DNA Methylase MTS PF05175.14 gi|261402465|ref|YP_003246689.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.0 1 0 0 1 1 1 0 Methyltransferase small domain GHMP_kinases_C PF08544.13 gi|261402466|ref|YP_003246690.1| - 6.8e-15 55.2 0.0 1.3e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|261402466|ref|YP_003246690.1| - 1.7e-14 53.8 0.0 3.2e-14 52.9 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Cas6b_C PF17262.2 gi|261402466|ref|YP_003246690.1| - 0.033 14.3 2.1 0.52 10.4 0.0 3.0 3 0 0 3 3 3 0 Cas6b C-terminal domain UvrD-helicase PF00580.21 gi|261402466|ref|YP_003246690.1| - 0.05 13.1 3.9 0.066 12.7 3.9 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain SDH_beta PF03315.15 gi|261402466|ref|YP_003246690.1| - 0.055 13.9 0.0 0.087 13.2 0.0 1.4 1 0 0 1 1 1 0 Serine dehydratase beta chain Csm1_B PF18211.1 gi|261402466|ref|YP_003246690.1| - 0.11 12.3 1.7 0.62 9.9 0.0 2.7 2 1 0 2 2 2 0 Csm1 subunit domain B Aminotran_1_2 PF00155.21 gi|261402467|ref|YP_003246691.1| - 7.4e-54 183.3 0.0 8.3e-54 183.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|261402467|ref|YP_003246691.1| - 1.5e-05 23.7 0.0 2.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|261402467|ref|YP_003246691.1| - 0.00011 21.7 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|261402467|ref|YP_003246691.1| - 0.0059 15.4 0.0 0.0092 14.7 0.0 1.2 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain DUF4600 PF15372.6 gi|261402467|ref|YP_003246691.1| - 0.02 15.3 0.0 0.041 14.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4600) CbiA PF01656.23 gi|261402468|ref|YP_003246692.1| - 2.4e-24 85.8 0.2 3.3e-24 85.4 0.2 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|261402468|ref|YP_003246692.1| - 9.5e-17 61.5 0.3 1.5e-16 60.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|261402468|ref|YP_003246692.1| - 2.3e-13 50.2 2.1 5.9e-12 45.6 2.1 2.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|261402468|ref|YP_003246692.1| - 2.5e-13 50.1 3.8 4.3e-07 29.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|261402468|ref|YP_003246692.1| - 8.9e-10 38.4 0.0 3.7e-05 23.3 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|261402468|ref|YP_003246692.1| - 1.2e-09 37.8 1.9 4.2e-09 36.0 1.9 2.1 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|261402468|ref|YP_003246692.1| - 0.0005 19.9 5.7 0.11 12.2 0.3 2.9 2 1 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|261402468|ref|YP_003246692.1| - 0.0007 19.4 0.5 0.57 9.9 0.1 2.6 1 1 1 2 2 2 2 AAA domain ATP_bind_1 PF03029.17 gi|261402468|ref|YP_003246692.1| - 0.00089 19.1 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MipZ PF09140.11 gi|261402468|ref|YP_003246692.1| - 0.00093 18.6 0.3 0.41 9.9 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ KAP_NTPase PF07693.14 gi|261402468|ref|YP_003246692.1| - 0.0011 18.3 0.1 0.0025 17.1 0.0 1.6 2 0 0 2 2 2 1 KAP family P-loop domain CLP1_P PF16575.5 gi|261402468|ref|YP_003246692.1| - 0.0025 17.6 0.3 0.047 13.5 0.0 2.2 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|261402468|ref|YP_003246692.1| - 0.0053 17.1 0.0 0.0096 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain TrkA_N PF02254.18 gi|261402468|ref|YP_003246692.1| - 0.0068 16.7 0.8 5.4 7.3 0.1 2.8 2 1 1 3 3 3 1 TrkA-N domain GTP_EFTU PF00009.27 gi|261402468|ref|YP_003246692.1| - 0.0088 15.6 1.0 0.12 11.9 1.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain DUF87 PF01935.17 gi|261402468|ref|YP_003246692.1| - 0.011 15.9 0.9 0.011 15.9 0.9 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain Ras PF00071.22 gi|261402468|ref|YP_003246692.1| - 0.011 15.3 0.5 1.3 8.6 0.1 2.5 2 0 0 2 2 2 0 Ras family PDDEXK_10 PF07788.11 gi|261402468|ref|YP_003246692.1| - 0.026 14.4 0.4 0.084 12.8 0.4 1.9 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily Toprim PF01751.22 gi|261402468|ref|YP_003246692.1| - 0.027 14.7 0.1 0.089 13.0 0.1 2.1 1 1 0 1 1 1 0 Toprim domain RNA_helicase PF00910.22 gi|261402468|ref|YP_003246692.1| - 0.028 14.8 0.0 0.15 12.5 0.0 2.1 2 0 0 2 2 2 0 RNA helicase T2SSE PF00437.20 gi|261402468|ref|YP_003246692.1| - 0.037 13.1 0.2 0.072 12.1 0.2 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|261402468|ref|YP_003246692.1| - 0.038 13.9 1.5 2.1 8.2 0.2 2.3 2 0 0 2 2 2 0 RsgA GTPase Pox_A32 PF04665.12 gi|261402468|ref|YP_003246692.1| - 0.058 12.8 0.1 4.8 6.6 0.0 2.4 2 1 0 2 2 2 0 Poxvirus A32 protein Toprim_4 PF13662.6 gi|261402468|ref|YP_003246692.1| - 0.087 13.3 0.3 0.5 10.9 0.1 2.2 2 0 0 2 2 2 0 Toprim domain KTI12 PF08433.10 gi|261402468|ref|YP_003246692.1| - 0.088 12.2 0.4 0.25 10.8 0.0 1.9 2 1 0 2 2 2 0 Chromatin associated protein KTI12 SRP54 PF00448.22 gi|261402468|ref|YP_003246692.1| - 0.095 12.3 4.2 0.88 9.2 0.4 2.7 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|261402468|ref|YP_003246692.1| - 0.16 11.1 1.7 0.36 10.0 1.7 1.8 1 1 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|261402468|ref|YP_003246692.1| - 0.17 12.0 3.0 4.3 7.4 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase DUF1998 PF09369.10 gi|261402468|ref|YP_003246692.1| - 0.19 12.5 0.0 2 9.2 0.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1998) DUF2092 PF09865.9 gi|261402469|ref|YP_003246693.1| - 3e-08 33.3 10.2 8.5e-06 25.3 7.1 3.4 2 1 0 2 2 2 1 Predicted periplasmic protein (DUF2092) DUF4367 PF14285.6 gi|261402469|ref|YP_003246693.1| - 4.7e-08 33.4 3.4 4.7e-08 33.4 3.4 3.5 2 1 1 3 3 3 2 Domain of unknown function (DUF4367) LolA_like PF17131.4 gi|261402469|ref|YP_003246693.1| - 4.2e-07 29.9 5.3 7.2e-07 29.1 1.9 2.4 1 1 1 2 2 2 1 Outer membrane lipoprotein-sorting protein LolA PF03548.15 gi|261402469|ref|YP_003246693.1| - 0.00044 20.0 2.2 0.00048 19.9 0.6 1.8 2 1 0 2 2 2 1 Outer membrane lipoprotein carrier protein LolA Spo7 PF03907.13 gi|261402469|ref|YP_003246693.1| - 0.024 14.1 0.1 0.033 13.7 0.1 1.3 1 0 0 1 1 1 0 Spo7-like protein Ycf70 PF17382.2 gi|261402469|ref|YP_003246693.1| - 0.041 14.3 1.5 0.14 12.6 0.1 2.5 3 0 0 3 3 3 0 Uncharacterized Ycf70-like UPF0146 PF03686.13 gi|261402470|ref|YP_003246694.1| - 2e-40 137.7 0.3 2.3e-40 137.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) TrkA_N PF02254.18 gi|261402470|ref|YP_003246694.1| - 0.0086 16.3 0.1 0.13 12.6 0.0 2.1 1 1 0 2 2 2 1 TrkA-N domain ADH_zinc_N PF00107.26 gi|261402470|ref|YP_003246694.1| - 0.029 14.4 0.0 0.22 11.5 0.0 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Ribosomal_L39 PF00832.20 gi|261402471|ref|YP_003246695.1| - 6.2e-20 70.5 8.2 7.5e-20 70.3 8.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein QueC PF06508.13 gi|261402472|ref|YP_003246696.1| - 0.0015 18.0 0.0 0.0045 16.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|261402472|ref|YP_003246696.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase Ribosomal_S17e PF00833.18 gi|261402472|ref|YP_003246696.1| - 0.045 13.7 0.5 3.6 7.5 0.3 2.7 2 1 1 3 3 3 0 Ribosomal S17 tRNA_Me_trans PF03054.16 gi|261402472|ref|YP_003246696.1| - 0.057 12.2 0.0 0.093 11.5 0.0 1.5 1 1 0 1 1 1 0 tRNA methyl transferase dsDNA_bind PF01984.20 gi|261402473|ref|YP_003246697.1| - 4.1e-22 78.6 13.9 4.9e-22 78.3 13.9 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Ribosomal_S19e PF01090.19 gi|261402474|ref|YP_003246698.1| - 9.9e-59 197.0 0.0 1.1e-58 196.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|261402474|ref|YP_003246698.1| - 5.1e-05 23.1 0.0 0.002 17.9 0.0 2.4 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|261402474|ref|YP_003246698.1| - 0.0052 16.8 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|261402474|ref|YP_003246698.1| - 0.016 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain NTS PF15447.6 gi|261402474|ref|YP_003246698.1| - 0.12 12.9 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 N-terminal segments of PfEMP1 HemN_C PF06969.16 gi|261402474|ref|YP_003246698.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain ThiF PF00899.21 gi|261402475|ref|YP_003246699.1| - 1.6e-11 44.1 0.0 2.1e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.6 gi|261402475|ref|YP_003246699.1| - 0.19 11.7 0.1 0.39 10.7 0.1 1.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Nop PF01798.18 gi|261402476|ref|YP_003246700.1| - 1.2e-64 218.0 0.1 1.2e-64 218.0 0.1 1.5 2 0 0 2 2 2 1 snoRNA binding domain, fibrillarin Vfa1 PF08432.10 gi|261402476|ref|YP_003246700.1| - 1 9.7 22.8 2.3 8.5 22.8 1.6 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 RP-C_C PF11800.8 gi|261402476|ref|YP_003246700.1| - 1.1 9.3 6.1 2.4 8.2 6.1 1.5 1 0 0 1 1 1 0 Replication protein C C-terminal region AIRS_C PF02769.22 gi|261402479|ref|YP_003246703.1| - 3.5e-26 92.2 0.0 6.6e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|261402479|ref|YP_003246703.1| - 3.7e-16 59.6 0.7 6.1e-16 58.9 0.7 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GATase_7 PF13537.6 gi|261402480|ref|YP_003246704.1| - 1.5e-23 83.1 0.0 2.2e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|261402480|ref|YP_003246704.1| - 8.9e-22 77.7 0.0 1.6e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|261402480|ref|YP_003246704.1| - 5.7e-09 35.3 0.0 1.7e-08 33.7 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Pribosyltran PF00156.27 gi|261402480|ref|YP_003246704.1| - 5.8e-07 29.2 0.1 1.2e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain MctB PF11382.8 gi|261402480|ref|YP_003246704.1| - 0.22 11.2 0.1 0.36 10.5 0.1 1.2 1 0 0 1 1 1 0 Copper transport outer membrane protein, MctB TctA PF01970.16 gi|261402481|ref|YP_003246705.1| - 0.17 10.6 3.7 0.17 10.5 3.7 1.0 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family DUF3236 PF11576.8 gi|261402482|ref|YP_003246706.1| - 1.1e-68 229.8 3.8 1.2e-68 229.6 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3236) DUF1188 PF06690.11 gi|261402483|ref|YP_003246707.1| - 1.2e-89 300.1 3.4 1.4e-89 299.9 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Glyco_hydro_1 PF00232.18 gi|261402483|ref|YP_003246707.1| - 0.064 11.7 0.0 0.078 11.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 1 Ldh_1_N PF00056.23 gi|261402484|ref|YP_003246708.1| - 2.4e-32 111.9 1.0 4.5e-32 111.1 0.4 1.7 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|261402484|ref|YP_003246708.1| - 1e-26 93.9 0.0 1.8e-26 93.0 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Semialdhyde_dh PF01118.24 gi|261402484|ref|YP_003246708.1| - 3.7e-05 24.2 0.0 7.7e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|261402484|ref|YP_003246708.1| - 7.3e-05 22.4 1.3 0.00046 19.8 0.1 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|261402484|ref|YP_003246708.1| - 0.0017 18.6 0.1 0.0054 17.0 0.0 1.9 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|261402484|ref|YP_003246708.1| - 0.0033 17.5 0.1 0.0061 16.7 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|261402484|ref|YP_003246708.1| - 0.0039 17.7 0.1 0.0084 16.7 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Ribosom_S12_S23 PF00164.25 gi|261402484|ref|YP_003246708.1| - 0.021 14.4 0.0 0.052 13.2 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S12/S23 CobW_C PF07683.14 gi|261402484|ref|YP_003246708.1| - 0.061 13.3 0.0 4 7.4 0.0 2.4 2 0 0 2 2 2 0 Cobalamin synthesis protein cobW C-terminal domain DUF2120 PF09893.9 gi|261402485|ref|YP_003246709.1| - 2.7e-41 140.8 1.3 3.3e-41 140.6 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) TraT PF05818.12 gi|261402485|ref|YP_003246709.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein GHMP_kinases_N PF00288.26 gi|261402486|ref|YP_003246710.1| - 0.0028 17.9 0.0 0.0065 16.7 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|261402486|ref|YP_003246710.1| - 0.024 15.0 0.1 0.28 11.6 0.0 2.6 3 0 0 3 3 3 0 GHMP kinases C terminal tRNA-synt_2c PF01411.19 gi|261402487|ref|YP_003246711.1| - 1.4e-162 542.1 1.8 2.3e-162 541.4 1.8 1.4 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|261402487|ref|YP_003246711.1| - 3.5e-13 50.2 4.1 2e-12 47.7 4.1 2.4 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|261402487|ref|YP_003246711.1| - 2.6e-12 46.6 1.5 8.8e-12 44.9 1.5 1.9 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TMPIT PF07851.13 gi|261402487|ref|YP_003246711.1| - 0.29 10.3 1.0 0.56 9.4 1.0 1.3 1 0 0 1 1 1 0 TMPIT-like protein DUF327 PF03885.13 gi|261402487|ref|YP_003246711.1| - 0.99 9.4 0.0 0.99 9.4 0.0 4.6 7 0 0 7 7 7 0 Protein of unknown function (DUF327) XhlA PF10779.9 gi|261402487|ref|YP_003246711.1| - 4.4 7.6 6.9 7.5 6.8 0.2 3.7 3 0 0 3 3 3 0 Haemolysin XhlA TPR_3 PF07720.12 gi|261402488|ref|YP_003246712.1| - 8.8e-07 28.8 1.5 8.8e-07 28.8 1.5 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat pPIWI_RE_Z PF18155.1 gi|261402488|ref|YP_003246712.1| - 0.0033 17.3 0.1 0.096 12.6 0.0 2.4 2 0 0 2 2 2 1 pPIWI RE three-gene island domain Z ArAE_1_C PF11728.8 gi|261402488|ref|YP_003246712.1| - 0.01 15.9 7.3 0.095 12.7 0.0 3.2 2 1 1 3 3 3 1 Putative aromatic acid exporter C-terminal domain Chol_subst-bind PF09129.11 gi|261402488|ref|YP_003246712.1| - 0.06 12.3 0.6 0.57 9.1 0.0 2.2 2 0 0 2 2 2 0 Cholesterol oxidase, substrate-binding PPR PF01535.20 gi|261402488|ref|YP_003246712.1| - 0.16 12.3 0.8 3.9 7.9 0.3 3.1 3 0 0 3 3 3 0 PPR repeat TPR_2 PF07719.17 gi|261402488|ref|YP_003246712.1| - 0.83 9.9 5.4 8.7 6.7 1.2 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|261402488|ref|YP_003246712.1| - 6.2 6.8 8.7 1.1 9.2 0.7 3.3 4 0 0 4 4 4 0 Tetratricopeptide repeat DNA_methylase PF00145.17 gi|261402489|ref|YP_003246713.1| - 3.8e-46 158.0 1.2 5e-31 108.3 1.6 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|261402489|ref|YP_003246713.1| - 0.0041 16.7 0.2 0.0089 15.6 0.0 1.8 2 1 0 2 2 2 1 RNA cap guanine-N2 methyltransferase NCD1 PF04904.13 gi|261402489|ref|YP_003246713.1| - 0.061 13.3 0.1 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 NAB conserved region 1 (NCD1) HD PF01966.22 gi|261402490|ref|YP_003246714.1| - 5e-09 36.4 1.2 9.1e-09 35.6 1.2 1.5 1 0 0 1 1 1 1 HD domain DUF3751 PF12571.8 gi|261402490|ref|YP_003246714.1| - 0.096 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Phage tail-collar fibre protein DeoC PF01791.9 gi|261402491|ref|YP_003246715.1| - 2.3e-45 155.0 0.0 2.8e-45 154.8 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase YlbD_coat PF14071.6 gi|261402492|ref|YP_003246716.1| - 0.011 16.0 0.1 0.018 15.3 0.1 1.4 1 0 0 1 1 1 0 Putative coat protein SIS PF01380.22 gi|261402493|ref|YP_003246717.1| - 1.1e-35 122.3 4.7 8.4e-20 71.0 1.0 2.4 2 0 0 2 2 2 2 SIS domain Intein_splicing PF14890.6 gi|261402493|ref|YP_003246717.1| - 4.6e-34 117.2 0.0 1.4e-31 109.2 0.0 3.9 3 3 0 4 4 4 1 Intein splicing domain GATase_7 PF13537.6 gi|261402493|ref|YP_003246717.1| - 1.3e-18 67.1 0.0 3.8e-18 65.6 0.0 1.8 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|261402493|ref|YP_003246717.1| - 4.5e-17 62.5 0.0 9.1e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Hint PF01079.20 gi|261402493|ref|YP_003246717.1| - 3.2e-05 23.6 0.1 0.00016 21.3 0.0 2.1 2 0 0 2 2 2 1 Hint module LAGLIDADG_3 PF14528.6 gi|261402493|ref|YP_003246717.1| - 0.00062 20.0 1.0 0.0039 17.5 0.1 3.0 2 0 0 2 2 2 1 LAGLIDADG-like domain SIS_2 PF13580.6 gi|261402493|ref|YP_003246717.1| - 0.0071 16.4 1.1 11 6.0 0.0 3.7 3 1 1 4 4 4 1 SIS domain GATase_4 PF13230.6 gi|261402493|ref|YP_003246717.1| - 0.017 14.0 0.1 0.062 12.2 0.0 1.8 2 0 0 2 2 2 0 Glutamine amidotransferases class-II MCR_C PF04609.12 gi|261402493|ref|YP_003246717.1| - 0.018 14.1 6.5 0.48 9.5 0.2 3.2 3 0 0 3 3 3 0 Methyl-coenzyme M reductase operon protein C Ligase_CoA PF00549.19 gi|261402493|ref|YP_003246717.1| - 0.59 9.9 2.4 1.5 8.6 0.4 2.6 2 0 0 2 2 2 0 CoA-ligase DUF327 PF03885.13 gi|261402493|ref|YP_003246717.1| - 2.1 8.3 15.3 1.7 8.6 0.2 4.1 4 1 0 4 4 4 0 Protein of unknown function (DUF327) UPF0147 PF03685.13 gi|261402494|ref|YP_003246718.1| - 1.7e-34 117.7 1.8 1.9e-34 117.6 1.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|261402494|ref|YP_003246718.1| - 0.0038 17.5 0.1 1.4 9.3 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0253) Caskin-tail PF16632.5 gi|261402494|ref|YP_003246718.1| - 0.059 13.8 0.8 1 9.8 0.6 2.1 1 1 1 2 2 2 0 C-terminal region of Caskin Aldolase_II PF00596.21 gi|261402495|ref|YP_003246719.1| - 4.8e-40 137.5 0.0 5.4e-40 137.3 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain 2-ph_phosp PF04029.14 gi|261402496|ref|YP_003246720.1| - 2.9e-49 167.3 0.2 3.7e-49 166.9 0.2 1.1 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase RNase_P_p30 PF01876.16 gi|261402497|ref|YP_003246721.1| - 1.5e-38 132.4 0.8 1.8e-38 132.1 0.8 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Nudix_N PF12535.8 gi|261402497|ref|YP_003246721.1| - 0.026 14.1 0.4 0.062 12.9 0.4 1.6 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal CNOT11 PF10155.9 gi|261402497|ref|YP_003246721.1| - 0.17 12.0 2.0 6.3 7.0 0.5 2.2 2 0 0 2 2 2 0 CCR4-NOT transcription complex subunit 11 LEA_2 PF03168.13 gi|261402498|ref|YP_003246722.1| - 1.6e-09 38.2 0.3 2.3e-09 37.7 0.3 1.2 1 0 0 1 1 1 1 Late embryogenesis abundant protein Vac7 PF12751.7 gi|261402498|ref|YP_003246722.1| - 0.037 13.5 0.1 0.053 13.0 0.1 1.2 1 0 0 1 1 1 0 Vacuolar segregation subunit 7 Kindlin_2_N PF18124.1 gi|261402498|ref|YP_003246722.1| - 0.083 13.1 1.3 0.28 11.4 0.2 2.1 2 0 0 2 2 2 0 Kindlin-2 N-terminal domain Spore_GerAC PF05504.11 gi|261402498|ref|YP_003246722.1| - 0.74 10.0 6.6 0.23 11.7 3.1 1.8 1 1 1 2 2 2 0 Spore germination B3/ GerAC like, C-terminal OrfB_Zn_ribbon PF07282.11 gi|261402499|ref|YP_003246723.1| - 5.2e-17 61.5 1.3 9.7e-17 60.7 1.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|261402499|ref|YP_003246723.1| - 2.3e-08 34.3 0.2 4.9e-08 33.2 0.2 1.6 1 0 0 1 1 1 1 Probable transposase Prok-RING_1 PF14446.6 gi|261402499|ref|YP_003246723.1| - 0.0013 18.6 2.7 0.0023 17.8 2.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HypA PF01155.19 gi|261402499|ref|YP_003246723.1| - 0.024 14.6 0.3 0.045 13.8 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PHD PF00628.29 gi|261402499|ref|YP_003246723.1| - 0.052 13.4 1.5 0.086 12.7 1.5 1.4 1 0 0 1 1 1 0 PHD-finger DZR PF12773.7 gi|261402499|ref|YP_003246723.1| - 0.059 13.4 1.4 0.11 12.6 1.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|261402499|ref|YP_003246723.1| - 0.063 13.3 0.9 0.13 12.3 0.9 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|261402499|ref|YP_003246723.1| - 0.15 11.7 1.4 0.27 11.0 1.4 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|261402499|ref|YP_003246723.1| - 0.21 11.3 4.3 0.51 10.1 4.3 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.6 gi|261402499|ref|YP_003246723.1| - 0.28 10.6 3.0 0.58 9.5 3.0 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger C1_1 PF00130.22 gi|261402499|ref|YP_003246723.1| - 0.3 11.0 2.3 0.53 10.2 2.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|261402499|ref|YP_003246723.1| - 0.75 9.3 4.6 2.8 7.5 4.6 1.9 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.6 gi|261402499|ref|YP_003246723.1| - 0.88 9.6 6.1 2 8.4 5.8 1.9 1 1 0 1 1 1 0 YhfH-like protein RNA_POL_M_15KD PF02150.16 gi|261402499|ref|YP_003246723.1| - 1.1 9.2 4.8 0.39 10.6 1.9 1.7 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rad50_zn_hook PF04423.14 gi|261402499|ref|YP_003246723.1| - 1.5 8.7 5.6 1.4 8.8 0.1 3.3 4 0 0 4 4 4 0 Rad50 zinc hook motif zinc_ribbon_5 PF13719.6 gi|261402499|ref|YP_003246723.1| - 2.5 7.9 5.3 7.6 6.4 5.3 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|261402499|ref|YP_003246723.1| - 4.9 7.4 5.4 58 4.0 3.3 2.9 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.6 gi|261402499|ref|YP_003246723.1| - 8.1 6.9 7.8 0.87 10.0 2.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar HEM4 PF02602.15 gi|261402501|ref|YP_003246725.1| - 5.4e-39 133.9 0.0 6.3e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD FF PF01846.19 gi|261402501|ref|YP_003246725.1| - 0.034 14.3 0.2 19 5.5 0.0 3.3 3 0 0 3 3 3 0 FF domain MreB_Mbl PF06723.13 gi|261402501|ref|YP_003246725.1| - 0.036 12.9 0.4 5 5.8 0.0 2.1 2 0 0 2 2 2 0 MreB/Mbl protein UPF0258 PF06789.12 gi|261402501|ref|YP_003246725.1| - 0.063 13.4 0.5 0.11 12.7 0.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0258) PYC_OADA PF02436.18 gi|261402501|ref|YP_003246725.1| - 0.092 12.5 0.8 0.23 11.2 0.8 1.6 1 1 0 1 1 1 0 Conserved carboxylase domain RRM_2 PF04059.12 gi|261402501|ref|YP_003246725.1| - 0.25 11.6 2.8 27 5.1 0.1 3.4 1 1 1 3 3 3 0 RNA recognition motif 2 HypD PF01924.16 gi|261402502|ref|YP_003246726.1| - 7.1e-146 485.8 1.1 8.1e-146 485.6 1.1 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family ZapB PF06005.12 gi|261402502|ref|YP_003246726.1| - 0.13 12.8 0.1 0.26 11.8 0.1 1.4 1 0 0 1 1 1 0 Cell division protein ZapB MS_channel PF00924.18 gi|261402503|ref|YP_003246727.1| - 8.8e-66 221.4 6.1 8.8e-66 221.4 6.1 1.7 3 0 0 3 3 3 1 Mechanosensitive ion channel DUF3382 PF11862.8 gi|261402503|ref|YP_003246727.1| - 0.0044 17.2 2.0 0.01 16.1 2.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3382) CTP_transf_like PF01467.26 gi|261402504|ref|YP_003246728.1| - 1.7e-20 73.6 0.0 2e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|261402504|ref|YP_003246728.1| - 0.0019 18.1 0.0 0.0032 17.4 0.0 1.7 1 1 0 1 1 1 1 FAD synthetase DUF1884 PF08967.10 gi|261402504|ref|YP_003246728.1| - 0.008 16.4 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1884) Peripla_BP_2 PF01497.18 gi|261402504|ref|YP_003246728.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein AI-2E_transport PF01594.16 gi|261402505|ref|YP_003246729.1| - 3.2e-59 200.7 36.8 4.1e-59 200.4 36.8 1.0 1 0 0 1 1 1 1 AI-2E family transporter GIT1_C PF12205.8 gi|261402505|ref|YP_003246729.1| - 0.18 11.9 0.0 6.1 7.0 0.0 2.1 2 0 0 2 2 2 0 G protein-coupled receptor kinase-interacting protein 1 C term Glycos_transf_1 PF00534.20 gi|261402506|ref|YP_003246730.1| - 2.3e-39 134.7 1.5 3.7e-39 134.0 0.2 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|261402506|ref|YP_003246730.1| - 1.9e-28 99.5 0.1 5.7e-28 98.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|261402506|ref|YP_003246730.1| - 2.6e-26 92.6 0.1 4.7e-26 91.8 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|261402506|ref|YP_003246730.1| - 4.5e-15 55.9 2.7 8.2e-15 55.1 1.3 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|261402506|ref|YP_003246730.1| - 3.8e-14 52.9 0.0 7.7e-14 51.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|261402506|ref|YP_003246730.1| - 2.7e-07 31.2 0.0 5e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF3492 PF11997.8 gi|261402506|ref|YP_003246730.1| - 0.0072 16.1 1.8 0.48 10.1 0.0 2.4 1 1 0 2 2 2 1 Domain of unknown function (DUF3492) PIGA PF08288.12 gi|261402506|ref|YP_003246730.1| - 0.045 14.3 0.1 0.12 13.0 0.1 1.8 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) TFIIS_C PF01096.18 gi|261402507|ref|YP_003246731.1| - 2.8e-20 71.9 8.5 2.8e-20 71.9 8.5 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|261402507|ref|YP_003246731.1| - 5.7e-13 48.5 1.9 5.7e-13 48.5 1.9 3.7 4 0 0 4 4 4 1 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|261402507|ref|YP_003246731.1| - 2.3e-05 24.2 13.9 0.062 13.2 0.5 4.3 3 1 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|261402507|ref|YP_003246731.1| - 2.8e-05 23.4 13.0 0.002 17.4 1.1 3.3 3 0 0 3 3 3 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|261402507|ref|YP_003246731.1| - 0.00015 21.2 11.5 0.043 13.3 2.0 3.4 3 1 0 3 3 3 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|261402507|ref|YP_003246731.1| - 0.00023 21.1 15.6 0.00072 19.5 5.5 2.8 2 1 1 3 3 3 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|261402507|ref|YP_003246731.1| - 0.004 16.8 16.5 1.2 8.9 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain UPF0547 PF10571.9 gi|261402507|ref|YP_003246731.1| - 0.0042 17.1 15.7 0.74 10.0 0.1 4.2 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|261402507|ref|YP_003246731.1| - 0.0071 16.2 12.7 0.078 12.9 5.7 2.5 1 1 0 2 2 2 2 Putative transposase DNA-binding domain RecR PF02132.15 gi|261402507|ref|YP_003246731.1| - 0.0091 15.6 5.0 0.14 11.8 0.2 3.3 3 0 0 3 3 3 1 RecR protein DZR PF12773.7 gi|261402507|ref|YP_003246731.1| - 0.063 13.3 14.1 4.3e+02 1.0 14.3 3.0 1 1 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|261402507|ref|YP_003246731.1| - 0.064 12.9 9.8 5.5 6.6 9.8 2.7 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|261402507|ref|YP_003246731.1| - 0.081 12.9 13.3 0.13 12.2 1.1 2.6 2 1 0 2 2 2 0 zinc-ribbons zf-Mss51 PF13824.6 gi|261402507|ref|YP_003246731.1| - 0.13 12.4 14.9 0.45 10.7 1.4 3.0 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2752 PF10825.8 gi|261402507|ref|YP_003246731.1| - 0.16 12.1 0.2 0.16 12.1 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Zn-ribbon_8 PF09723.10 gi|261402507|ref|YP_003246731.1| - 0.17 12.0 16.4 2.5 8.3 1.0 4.4 4 1 0 4 4 4 0 Zinc ribbon domain CxC3 PF18804.1 gi|261402507|ref|YP_003246731.1| - 0.31 10.9 5.9 0.18 11.6 1.6 2.6 1 1 1 2 2 2 0 CxC3 like cysteine cluster associated with KDZ transposases zf-IS66 PF13005.7 gi|261402507|ref|YP_003246731.1| - 0.32 11.4 10.8 25 5.4 0.1 4.2 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|261402507|ref|YP_003246731.1| - 0.63 10.1 12.8 0.052 13.6 0.9 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 gi|261402507|ref|YP_003246731.1| - 0.71 10.0 14.9 8 6.6 0.1 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L32p PF01783.23 gi|261402507|ref|YP_003246731.1| - 0.72 10.1 8.1 12 6.2 0.8 3.4 3 1 0 3 3 3 0 Ribosomal L32p protein family PriA_CRR PF18319.1 gi|261402507|ref|YP_003246731.1| - 0.73 9.9 0.0 0.73 9.9 0.0 3.8 4 0 0 4 4 4 0 PriA DNA helicase Cys-rich region (CRR) domain DNA_RNApol_7kD PF03604.13 gi|261402507|ref|YP_003246731.1| - 1.5 8.5 14.2 7.6 6.3 0.1 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_13 PF09855.9 gi|261402507|ref|YP_003246731.1| - 2 8.6 14.8 1.8 8.8 0.2 4.0 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) GFA PF04828.14 gi|261402507|ref|YP_003246731.1| - 3.4 8.1 8.4 2.9 8.3 0.2 3.0 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-C4_Topoisom PF01396.19 gi|261402507|ref|YP_003246731.1| - 3.5 7.5 15.7 1.2 9.0 1.9 3.4 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-HIT PF04438.16 gi|261402507|ref|YP_003246731.1| - 4.2 7.3 16.2 9.8 6.1 0.7 4.2 4 0 0 4 4 4 0 HIT zinc finger Desulfoferrod_N PF06397.12 gi|261402507|ref|YP_003246731.1| - 5 6.8 9.4 3.3 7.4 0.3 2.8 3 0 0 3 3 2 0 Desulfoferrodoxin, N-terminal domain zf-NADH-PPase PF09297.11 gi|261402507|ref|YP_003246731.1| - 6 6.6 13.3 17 5.1 0.2 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|261402507|ref|YP_003246731.1| - 6.7 6.7 16.8 8.7 6.4 0.2 4.0 3 1 0 3 3 3 0 Nudix N-terminal zf_UBZ PF18439.1 gi|261402507|ref|YP_003246731.1| - 6.9 6.3 14.5 16 5.2 0.1 3.9 5 0 0 5 5 5 0 Ubiquitin-Binding Zinc Finger DUF2387 PF09526.10 gi|261402507|ref|YP_003246731.1| - 8.4 6.6 16.3 4.2 7.6 0.5 3.4 1 1 2 3 3 3 0 Probable metal-binding protein (DUF2387) A2L_zn_ribbon PF08792.10 gi|261402507|ref|YP_003246731.1| - 8.9 6.2 16.8 24 4.8 1.5 3.7 3 1 0 3 3 3 0 A2L zinc ribbon domain HscB_4_cys PF18256.1 gi|261402507|ref|YP_003246731.1| - 9.6 6.1 9.9 10 6.0 0.1 3.6 4 0 0 4 4 4 0 Co-chaperone HscB tetracysteine metal binding motif NUDIX PF00293.28 gi|261402508|ref|YP_003246732.1| - 2e-23 82.9 0.0 2.5e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|261402508|ref|YP_003246732.1| - 0.00042 19.9 0.0 0.012 15.1 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) DUF99 PF01949.16 gi|261402509|ref|YP_003246733.1| - 2.9e-56 189.8 0.0 3.3e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 BORCS8 PF10167.9 gi|261402509|ref|YP_003246733.1| - 0.01 15.7 0.2 0.021 14.8 0.0 1.5 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 8 SDH_sah PF01972.16 gi|261402510|ref|YP_003246734.1| - 2.6e-157 522.2 0.9 2.8e-157 522.0 0.9 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|261402510|ref|YP_003246734.1| - 3.2e-08 33.7 0.3 3.8e-07 30.2 0.0 2.0 2 0 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|261402510|ref|YP_003246734.1| - 9.8e-06 25.0 0.0 0.00036 19.9 0.0 2.2 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|261402510|ref|YP_003246734.1| - 0.021 14.8 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Peptidase family S49 Gp_dh_C PF02800.20 gi|261402511|ref|YP_003246735.1| - 2.5e-34 118.2 0.4 3.4e-34 117.7 0.4 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|261402511|ref|YP_003246735.1| - 1.3e-07 31.8 0.2 2.9e-07 30.6 0.2 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|261402511|ref|YP_003246735.1| - 1.6e-05 25.2 0.5 7.6e-05 23.0 0.1 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|261402511|ref|YP_003246735.1| - 0.0049 16.2 0.1 0.017 14.5 0.1 1.9 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|261402511|ref|YP_003246735.1| - 0.027 14.7 0.1 0.11 12.7 0.1 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DUF5498 PF17602.2 gi|261402511|ref|YP_003246735.1| - 0.13 12.8 0.3 0.44 11.0 0.1 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5498) Aida_N PF08910.10 gi|261402512|ref|YP_003246736.1| - 0.031 14.7 0.3 5.4 7.5 0.1 2.1 2 0 0 2 2 2 0 Aida N-terminus SIS PF01380.22 gi|261402513|ref|YP_003246737.1| - 9.9e-15 54.6 0.0 1.3e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|261402513|ref|YP_003246737.1| - 2.4e-07 30.8 0.6 5e-05 23.3 0.2 2.3 1 1 1 2 2 2 2 SIS domain TM1586_NiRdase PF14512.6 gi|261402513|ref|YP_003246737.1| - 0.0011 18.6 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Putative TM nitroreductase CoA_binding PF02629.19 gi|261402514|ref|YP_003246738.1| - 1.3e-30 105.9 1.5 1.3e-30 105.9 1.5 2.6 2 1 1 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|261402514|ref|YP_003246738.1| - 6.1e-17 61.8 0.4 9.9e-17 61.2 0.4 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|261402514|ref|YP_003246738.1| - 2.8e-12 46.6 0.0 5.9e-12 45.6 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|261402514|ref|YP_003246738.1| - 0.00016 22.1 0.0 0.00055 20.4 0.0 1.9 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|261402514|ref|YP_003246738.1| - 0.048 14.5 0.2 0.12 13.3 0.1 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DUF1611_N PF17396.2 gi|261402514|ref|YP_003246738.1| - 0.12 12.6 0.0 0.71 10.1 0.0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain PHP PF02811.19 gi|261402514|ref|YP_003246738.1| - 0.14 12.4 0.2 0.28 11.5 0.2 1.7 1 1 0 1 1 1 0 PHP domain tRNA_synthFbeta PF17759.1 gi|261402515|ref|YP_003246739.1| - 2e-41 141.8 0.0 2.8e-41 141.3 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|261402515|ref|YP_003246739.1| - 2.2e-18 66.3 0.0 4.1e-15 55.8 0.0 3.6 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|261402515|ref|YP_003246739.1| - 2.6e-17 63.1 0.3 1.8e-16 60.3 0.1 2.0 2 0 0 2 2 2 1 B3/4 domain PhetRS_B1 PF18262.1 gi|261402515|ref|YP_003246739.1| - 1.4e-09 38.0 0.3 2.9e-08 33.8 0.1 2.8 2 0 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|261402515|ref|YP_003246739.1| - 4.6e-06 26.3 0.0 1e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) TrbC PF04956.13 gi|261402516|ref|YP_003246740.1| - 0.062 13.5 0.6 0.062 13.5 0.6 2.9 3 2 0 3 3 3 0 TrbC/VIRB2 family UcrQ PF02939.16 gi|261402516|ref|YP_003246740.1| - 0.065 13.2 3.3 0.47 10.4 0.1 2.7 2 0 0 2 2 2 0 UcrQ family NTP_transf_2 PF01909.23 gi|261402517|ref|YP_003246741.1| - 5.8e-16 58.6 0.1 8.6e-16 58.0 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|261402517|ref|YP_003246741.1| - 4e-09 36.4 0.1 6.8e-09 35.7 0.1 1.6 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase SMODS PF18144.1 gi|261402517|ref|YP_003246741.1| - 0.0016 18.6 0.0 0.0028 17.9 0.0 1.7 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DNA_pol_B_palm PF14792.6 gi|261402517|ref|YP_003246741.1| - 0.0051 17.0 0.0 0.0076 16.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm NTF-like PF14540.6 gi|261402517|ref|YP_003246741.1| - 0.014 15.1 0.2 0.12 12.1 0.2 2.1 1 1 0 1 1 1 0 Nucleotidyltransferase-like HEPN PF05168.14 gi|261402518|ref|YP_003246742.1| - 8.4e-15 54.9 0.2 9.5e-15 54.8 0.2 1.0 1 0 0 1 1 1 1 HEPN domain HEPN_AbiV PF18728.1 gi|261402518|ref|YP_003246742.1| - 3.6e-06 27.2 0.1 4.2e-06 27.0 0.1 1.0 1 0 0 1 1 1 1 AbiV Peripla_BP_1 PF00532.21 gi|261402518|ref|YP_003246742.1| - 0.067 12.6 0.0 0.072 12.5 0.0 1.0 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family NTP_transf_2 PF01909.23 gi|261402520|ref|YP_003246744.1| - 6.6e-20 71.2 2.6 7.7e-20 71.0 2.6 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|261402520|ref|YP_003246744.1| - 1.8e-14 53.6 3.4 2.3e-14 53.2 3.4 1.2 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|261402520|ref|YP_003246744.1| - 0.002 18.3 0.0 0.0021 18.3 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm Adenyl_cycl_N PF12633.7 gi|261402520|ref|YP_003246744.1| - 0.0077 16.2 0.0 0.0084 16.0 0.0 1.1 1 0 0 1 1 1 1 Adenylate cyclase NT domain SMODS PF18144.1 gi|261402520|ref|YP_003246744.1| - 0.015 15.5 0.2 0.025 14.8 0.2 1.4 1 1 0 1 1 1 0 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Baculo_FP PF03258.14 gi|261402520|ref|YP_003246744.1| - 0.037 14.2 1.4 0.1 12.8 0.7 1.8 1 1 1 2 2 2 0 Baculovirus FP protein DUF294 PF03445.13 gi|261402520|ref|YP_003246744.1| - 0.044 13.6 0.0 0.049 13.4 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF86 PF01934.17 gi|261402521|ref|YP_003246745.1| - 1.4e-27 95.9 0.9 1.7e-27 95.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polysacc_synt_3 PF13440.6 gi|261402522|ref|YP_003246746.1| - 2.5e-18 66.3 20.4 2.5e-18 66.3 20.4 2.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|261402522|ref|YP_003246746.1| - 1.7e-08 34.2 34.9 1.7e-08 34.2 34.9 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|261402522|ref|YP_003246746.1| - 4.9e-05 23.4 14.9 4.9e-05 23.4 14.9 5.1 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain DUF3367 PF11847.8 gi|261402523|ref|YP_003246747.1| - 9.1e-07 27.1 0.1 2.7e-06 25.6 0.1 1.6 1 1 0 1 1 1 1 Alpha-(1->3)-arabinofuranosyltransferase ARL2_Bind_BART PF11527.8 gi|261402523|ref|YP_003246747.1| - 0.082 13.0 1.4 0.15 12.2 0.1 2.1 2 0 0 2 2 2 0 The ARF-like 2 binding protein BART MannoseP_isomer PF01050.18 gi|261402524|ref|YP_003246748.1| - 1.4e-62 210.0 3.2 1.5e-62 209.9 1.3 2.0 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase NTP_transferase PF00483.23 gi|261402524|ref|YP_003246748.1| - 1.2e-57 195.3 0.1 5.9e-57 193.1 0.0 1.8 2 0 0 2 2 2 1 Nucleotidyl transferase Cupin_2 PF07883.11 gi|261402524|ref|YP_003246748.1| - 2.9e-10 39.7 0.1 7.6e-10 38.4 0.1 1.7 1 0 0 1 1 1 1 Cupin domain NTP_transf_3 PF12804.7 gi|261402524|ref|YP_003246748.1| - 0.00013 22.3 0.0 0.00023 21.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain ID PF18543.1 gi|261402524|ref|YP_003246748.1| - 3 7.9 5.2 1 9.4 0.7 2.4 3 0 0 3 3 3 0 Intracellular delivery domain DUF483 PF04467.12 gi|261402525|ref|YP_003246749.1| - 6.5e-58 194.0 1.8 9.3e-58 193.5 1.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF483) RecG_N PF17190.4 gi|261402525|ref|YP_003246749.1| - 0.83 10.4 7.1 0.41 11.4 0.7 3.1 3 1 0 3 3 3 0 RecG N-terminal helical domain TrkA_N PF02254.18 gi|261402526|ref|YP_003246750.1| - 2.6e-33 114.7 1.4 4.8e-33 113.9 1.4 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|261402526|ref|YP_003246750.1| - 1.1e-15 57.2 0.3 3.1e-15 55.7 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|261402526|ref|YP_003246750.1| - 7.8e-06 25.6 0.4 9.6e-05 22.0 0.1 2.2 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|261402526|ref|YP_003246750.1| - 1.1e-05 25.8 0.4 4.3e-05 23.9 0.2 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|261402526|ref|YP_003246750.1| - 3.9e-05 23.9 0.1 7.3e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|261402526|ref|YP_003246750.1| - 0.00019 22.0 0.5 0.00071 20.1 0.1 2.2 3 1 0 3 3 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|261402526|ref|YP_003246750.1| - 0.00037 20.4 0.0 0.00057 19.8 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding ApbA PF02558.16 gi|261402526|ref|YP_003246750.1| - 0.00052 19.7 0.2 0.0016 18.1 0.0 1.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|261402526|ref|YP_003246750.1| - 0.0023 17.9 0.0 0.0041 17.0 0.0 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|261402526|ref|YP_003246750.1| - 0.0027 17.2 0.0 0.0037 16.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|261402526|ref|YP_003246750.1| - 0.0034 17.6 0.2 0.0084 16.4 0.2 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|261402526|ref|YP_003246750.1| - 0.0053 16.0 0.0 0.0063 15.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain UPF0180 PF03698.13 gi|261402526|ref|YP_003246750.1| - 0.0094 16.1 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0180) KR PF08659.10 gi|261402526|ref|YP_003246750.1| - 0.013 15.4 0.1 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 KR domain AdoHcyase_NAD PF00670.21 gi|261402526|ref|YP_003246750.1| - 0.014 15.5 0.7 0.024 14.7 0.7 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LpxI_N PF17930.1 gi|261402526|ref|YP_003246750.1| - 0.018 14.9 0.0 0.041 13.8 0.0 1.7 1 0 0 1 1 1 0 LpxI N-terminal domain adh_short PF00106.25 gi|261402526|ref|YP_003246750.1| - 0.021 14.3 0.1 0.029 13.9 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|261402526|ref|YP_003246750.1| - 0.036 14.0 0.0 0.065 13.2 0.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|261402526|ref|YP_003246750.1| - 0.081 12.1 0.2 0.16 11.2 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|261402526|ref|YP_003246750.1| - 0.083 12.4 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Thi4 PF01946.17 gi|261402526|ref|YP_003246750.1| - 0.095 11.9 1.2 0.19 10.9 1.1 1.5 1 1 0 1 1 1 0 Thi4 family Glyco_trans_4_2 PF13477.6 gi|261402526|ref|YP_003246750.1| - 0.11 12.5 0.1 0.44 10.6 0.1 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|261402526|ref|YP_003246750.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.8 1 1 0 1 1 1 0 Glycosyltransferase Family 4 NmrA PF05368.13 gi|261402526|ref|YP_003246750.1| - 0.13 11.7 0.1 0.29 10.7 0.1 1.5 1 0 0 1 1 1 0 NmrA-like family GHMP_kinases_N PF00288.26 gi|261402527|ref|YP_003246751.1| - 1.2e-12 47.9 1.0 2.2e-12 47.0 1.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|261402527|ref|YP_003246751.1| - 4.2e-07 30.2 0.0 1.2e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal TRM PF02005.16 gi|261402528|ref|YP_003246752.1| - 1.7e-123 412.5 0.2 3.3e-123 411.6 0.2 1.4 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.6 gi|261402528|ref|YP_003246752.1| - 3.3e-07 30.2 0.1 1.5e-06 28.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|261402528|ref|YP_003246752.1| - 1.3e-05 25.1 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|261402528|ref|YP_003246752.1| - 0.056 13.1 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|261402528|ref|YP_003246752.1| - 0.099 12.0 0.0 0.32 10.3 0.0 1.8 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family MarR PF01047.22 gi|261402528|ref|YP_003246752.1| - 0.11 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF1080 PF06439.11 gi|261402529|ref|YP_003246753.1| - 1.7e-07 31.5 0.0 2.3e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Domain of Unknown Function (DUF1080) Cation_efflux PF01545.21 gi|261402530|ref|YP_003246754.1| - 2.1e-47 161.4 16.4 2.5e-47 161.2 16.4 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|261402530|ref|YP_003246754.1| - 4.6e-17 61.9 1.2 8.8e-17 61.0 1.2 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter PAP2 PF01569.21 gi|261402530|ref|YP_003246754.1| - 1.4 8.6 13.6 0.62 9.8 0.8 3.7 1 1 2 3 3 3 0 PAP2 superfamily Lactamase_B PF00753.27 gi|261402531|ref|YP_003246755.1| - 5e-10 39.7 0.0 7.6e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|261402531|ref|YP_003246755.1| - 1.1e-05 25.1 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|261402531|ref|YP_003246755.1| - 4.6e-05 23.4 0.0 7.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Phage_holin_3_6 PF07332.11 gi|261402532|ref|YP_003246756.1| - 0.26 11.3 4.7 2.7 8.1 2.4 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III TraL PF07178.11 gi|261402532|ref|YP_003246756.1| - 2.8 8.5 8.2 14 6.3 3.8 2.4 2 1 0 2 2 2 0 TraL protein DUF5585 PF17823.1 gi|261402532|ref|YP_003246756.1| - 8.8 5.2 4.8 5.7 5.8 3.4 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5585) DUF505 PF04458.12 gi|261402533|ref|YP_003246757.1| - 4.7e-151 504.2 29.3 5.3e-77 259.6 11.3 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF505) HxlR PF01638.17 gi|261402533|ref|YP_003246757.1| - 0.0028 17.5 0.1 0.26 11.2 0.0 3.6 3 0 0 3 3 3 1 HxlR-like helix-turn-helix AAA_assoc_C PF09821.9 gi|261402533|ref|YP_003246757.1| - 0.043 14.4 6.1 0.5 10.9 0.1 4.0 3 1 1 4 4 4 0 C-terminal AAA-associated domain HTH_45 PF14947.6 gi|261402533|ref|YP_003246757.1| - 0.088 12.8 15.0 3.7 7.6 0.1 6.4 6 0 0 6 6 6 0 Winged helix-turn-helix Protoglobin PF11563.8 gi|261402534|ref|YP_003246758.1| - 1.4e-09 38.1 0.6 1.8e-09 37.7 0.6 1.1 1 0 0 1 1 1 1 Protoglobin IlvC PF01450.19 gi|261402534|ref|YP_003246758.1| - 0.0048 17.2 1.0 0.0048 17.2 1.0 1.6 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain SecA_SW PF07516.13 gi|261402534|ref|YP_003246758.1| - 0.0066 16.5 2.7 0.012 15.7 2.7 1.5 1 1 0 1 1 1 1 SecA Wing and Scaffold domain Phage_connect_1 PF05135.13 gi|261402534|ref|YP_003246758.1| - 0.024 15.1 3.8 0.035 14.6 1.1 2.2 1 1 1 2 2 2 0 Phage gp6-like head-tail connector protein PolyA_pol PF01743.20 gi|261402534|ref|YP_003246758.1| - 0.038 14.4 1.0 0.083 13.3 1.0 1.7 1 1 0 1 1 1 0 Poly A polymerase head domain Dna2 PF08696.11 gi|261402534|ref|YP_003246758.1| - 0.097 12.5 2.8 0.1 12.4 1.2 1.8 1 1 1 2 2 2 0 DNA replication factor Dna2 RAMPs PF03787.15 gi|261402534|ref|YP_003246758.1| - 0.33 10.9 4.8 0.42 10.6 4.8 1.2 1 0 0 1 1 1 0 RAMP superfamily ApoC-I PF04691.12 gi|261402534|ref|YP_003246758.1| - 0.41 10.6 7.6 0.11 12.5 2.3 2.5 2 1 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) YtxH PF12732.7 gi|261402534|ref|YP_003246758.1| - 0.5 10.9 3.4 60 4.3 3.3 3.0 1 1 0 1 1 1 0 YtxH-like protein ACDC PF14733.6 gi|261402534|ref|YP_003246758.1| - 0.7 10.2 5.2 12 6.3 0.1 3.2 2 1 1 3 3 3 0 AP2-coincident C-terminal SAM_Exu PF18609.1 gi|261402534|ref|YP_003246758.1| - 5.2 7.2 9.0 33 4.6 0.3 3.5 2 1 2 4 4 4 0 Exuperantia SAM-like domain TrkA_N PF02254.18 gi|261402535|ref|YP_003246759.1| - 1.3e-31 109.2 0.1 2.2e-31 108.5 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|261402535|ref|YP_003246759.1| - 5.8e-16 58.2 16.4 9.7e-16 57.5 16.4 1.3 1 0 0 1 1 1 1 Ion channel TrkA_C PF02080.21 gi|261402535|ref|YP_003246759.1| - 7e-15 54.6 0.0 1.3e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 TrkA-C domain GPDPase_memb PF10110.9 gi|261402535|ref|YP_003246759.1| - 0.054 12.3 6.4 0.073 11.8 6.4 1.1 1 0 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF1027 PF06265.11 gi|261402535|ref|YP_003246759.1| - 0.058 13.4 0.4 0.27 11.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1027) Ion_trans PF00520.31 gi|261402535|ref|YP_003246759.1| - 0.13 11.5 10.2 0.32 10.2 10.2 1.6 1 1 0 1 1 1 0 Ion transport protein Lig_chan PF00060.26 gi|261402535|ref|YP_003246759.1| - 0.39 10.5 1.7 1.6 8.6 1.8 1.9 1 1 1 2 2 2 0 Ligand-gated ion channel DEAD PF00270.29 gi|261402536|ref|YP_003246760.1| - 4e-24 85.3 0.1 1.8e-23 83.2 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|261402536|ref|YP_003246760.1| - 9.9e-17 61.3 0.1 6.5e-16 58.7 0.0 2.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|261402536|ref|YP_003246760.1| - 2.6e-09 37.3 0.0 7e-09 35.9 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit MTHFR PF02219.17 gi|261402536|ref|YP_003246760.1| - 0.025 13.9 0.6 0.051 12.9 0.6 1.4 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase AAA_19 PF13245.6 gi|261402536|ref|YP_003246760.1| - 0.026 14.9 0.2 4.6 7.6 0.2 3.1 2 1 0 2 2 2 0 AAA domain Prefoldin_3 PF13758.6 gi|261402536|ref|YP_003246760.1| - 0.091 12.8 1.2 0.32 11.1 0.4 2.4 2 0 0 2 2 2 0 Prefoldin subunit Class_IIIsignal PF04021.12 gi|261402537|ref|YP_003246761.1| - 6.7e-09 35.5 3.9 1e-08 34.9 3.9 1.3 1 0 0 1 1 1 1 Class III signal peptide DUF2106 PF09879.9 gi|261402537|ref|YP_003246761.1| - 0.022 14.3 0.3 0.026 14.1 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) Glycoprotein_G PF00802.19 gi|261402537|ref|YP_003246761.1| - 0.44 9.9 3.5 0.41 10.0 3.5 1.1 1 0 0 1 1 1 0 Pneumovirus attachment glycoprotein G AAA_18 PF13238.6 gi|261402538|ref|YP_003246762.1| - 4.8e-16 59.5 0.2 1.8e-14 54.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|261402538|ref|YP_003246762.1| - 6e-16 59.1 0.0 9.2e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|261402538|ref|YP_003246762.1| - 0.0078 16.3 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase P-mevalo_kinase PF04275.14 gi|261402538|ref|YP_003246762.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.4 1 1 0 1 1 1 0 Phosphomevalonate kinase AAA_33 PF13671.6 gi|261402538|ref|YP_003246762.1| - 0.013 15.7 0.0 5.6 7.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|261402538|ref|YP_003246762.1| - 0.014 14.4 0.2 0.052 12.5 0.0 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PRK PF00485.18 gi|261402538|ref|YP_003246762.1| - 0.018 14.7 1.0 2.9 7.6 0.1 2.3 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family CoaE PF01121.20 gi|261402538|ref|YP_003246762.1| - 0.063 12.9 0.0 0.35 10.5 0.0 2.0 1 1 1 2 2 2 0 Dephospho-CoA kinase dNK PF01712.19 gi|261402538|ref|YP_003246762.1| - 0.081 12.8 1.2 0.68 9.7 0.0 2.4 2 1 1 3 3 3 0 Deoxynucleoside kinase HTH_24 PF13412.6 gi|261402539|ref|YP_003246763.1| - 4.6e-17 61.3 1.9 1.4e-09 37.4 0.2 2.7 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|261402539|ref|YP_003246763.1| - 4.8e-14 51.9 0.0 1.1e-05 25.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|261402539|ref|YP_003246763.1| - 6.2e-14 51.8 0.0 8.9e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|261402539|ref|YP_003246763.1| - 3.9e-12 45.9 0.8 5.1e-05 23.1 0.0 2.7 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|261402539|ref|YP_003246763.1| - 3.9e-07 30.4 0.2 0.0031 17.9 0.0 2.5 2 0 0 2 2 2 2 Penicillinase repressor DUF2250 PF10007.9 gi|261402539|ref|YP_003246763.1| - 2.9e-05 24.1 2.1 0.0058 16.7 0.3 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) RepL PF05732.11 gi|261402539|ref|YP_003246763.1| - 4e-05 23.1 2.2 0.16 11.4 0.2 2.5 1 1 1 2 2 2 2 Firmicute plasmid replication protein (RepL) HTH_12 PF08461.10 gi|261402539|ref|YP_003246763.1| - 0.00011 22.1 0.2 0.034 14.1 0.1 2.5 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_CodY PF08222.11 gi|261402539|ref|YP_003246763.1| - 0.00026 20.5 0.1 0.62 9.7 0.0 2.4 2 0 0 2 2 2 2 CodY helix-turn-helix domain MarR PF01047.22 gi|261402539|ref|YP_003246763.1| - 0.00039 20.3 0.1 0.21 11.5 0.0 2.5 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|261402539|ref|YP_003246763.1| - 0.0008 19.7 0.1 2.1 8.8 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_38 PF13936.6 gi|261402539|ref|YP_003246763.1| - 0.00082 19.1 0.1 0.31 10.8 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|261402539|ref|YP_003246763.1| - 0.00083 19.3 0.8 0.59 10.1 0.1 2.7 1 1 1 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) MarR_2 PF12802.7 gi|261402539|ref|YP_003246763.1| - 0.0067 16.3 0.0 2.2 8.2 0.0 2.3 2 0 0 2 2 2 1 MarR family Glyco_hydro_42M PF08532.10 gi|261402539|ref|YP_003246763.1| - 0.0092 15.5 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Bot1p PF12298.8 gi|261402539|ref|YP_003246763.1| - 0.011 15.9 0.2 0.79 9.9 0.0 2.2 2 0 0 2 2 2 0 Eukaryotic mitochondrial regulator protein HTH_Crp_2 PF13545.6 gi|261402539|ref|YP_003246763.1| - 0.022 14.7 0.0 0.38 10.8 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain FaeA PF04703.12 gi|261402539|ref|YP_003246763.1| - 0.035 14.5 0.2 0.26 11.7 0.1 2.4 2 0 0 2 2 2 0 FaeA-like protein RPA_C PF08784.11 gi|261402539|ref|YP_003246763.1| - 0.043 14.5 0.1 20 5.9 0.0 2.5 3 0 0 3 3 2 0 Replication protein A C terminal HTH_34 PF13601.6 gi|261402539|ref|YP_003246763.1| - 0.044 14.0 0.1 0.33 11.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_30 PF13556.6 gi|261402539|ref|YP_003246763.1| - 0.058 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain PaaX PF07848.12 gi|261402539|ref|YP_003246763.1| - 0.063 13.5 0.0 0.28 11.4 0.0 2.0 2 0 0 2 2 1 0 PaaX-like protein HTH_27 PF13463.6 gi|261402539|ref|YP_003246763.1| - 0.065 13.7 0.1 6.5 7.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|261402539|ref|YP_003246763.1| - 0.087 12.7 0.0 9.3 6.2 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|261402539|ref|YP_003246763.1| - 0.1 12.8 0.0 4.6 7.5 0.0 2.4 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Strep_his_triad PF04270.13 gi|261402539|ref|YP_003246763.1| - 0.15 12.1 0.0 0.89 9.6 0.0 2.2 2 0 0 2 2 2 0 Streptococcal histidine triad protein DUF1673 PF07895.11 gi|261402540|ref|YP_003246764.1| - 0.053 13.2 3.4 0.062 13.0 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Jiraiya PF15038.6 gi|261402540|ref|YP_003246764.1| - 0.067 12.6 3.3 0.088 12.2 3.3 1.2 1 0 0 1 1 1 0 Jiraiya DUF2207 PF09972.9 gi|261402540|ref|YP_003246764.1| - 0.5 9.1 2.1 0.54 9.0 2.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF515 PF04415.12 gi|261402540|ref|YP_003246764.1| - 3.3 6.0 5.9 0.56 8.5 1.9 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF515) AglB_L1 PF18079.1 gi|261402541|ref|YP_003246765.1| - 0.039 14.2 0.8 8.5 6.7 0.2 2.8 2 0 0 2 2 2 0 Archaeal glycosylation protein B long peripheral domain Bact_lectin PF18483.1 gi|261402542|ref|YP_003246766.1| - 1.4e-74 250.4 17.9 3.6e-39 134.8 6.0 6.3 6 1 0 6 6 6 2 Bacterial lectin Beta_helix PF13229.6 gi|261402542|ref|YP_003246766.1| - 9.2e-12 45.1 107.3 2e-08 34.3 45.6 11.9 6 3 5 11 11 11 5 Right handed beta helix region Lectin_leg-like PF03388.13 gi|261402542|ref|YP_003246766.1| - 5.5e-06 25.9 14.4 0.002 17.5 0.8 3.7 3 0 0 3 3 3 2 Legume-like lectin family SdrD_B PF17210.3 gi|261402542|ref|YP_003246766.1| - 0.00027 21.1 2.8 0.00027 21.1 2.8 3.6 3 0 0 3 3 3 1 SdrD B-like domain ESPR PF13018.6 gi|261402542|ref|YP_003246766.1| - 0.07 12.9 5.4 4.7 7.1 0.5 3.0 2 0 0 2 2 2 0 Extended Signal Peptide of Type V secretion system Ribophorin_I PF04597.14 gi|261402543|ref|YP_003246767.1| - 0.042 13.0 0.0 0.062 12.5 0.0 1.1 1 0 0 1 1 1 0 Ribophorin I DUF4212 PF13937.6 gi|261402543|ref|YP_003246767.1| - 0.073 13.5 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) CTP_synth_N PF06418.14 gi|261402546|ref|YP_003246770.1| - 3.4e-130 433.1 0.4 4.8e-130 432.6 0.4 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|261402546|ref|YP_003246770.1| - 1.3e-57 194.7 0.0 2.1e-57 193.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|261402546|ref|YP_003246770.1| - 2.6e-06 27.3 0.2 1.5e-05 24.8 0.0 2.3 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|261402546|ref|YP_003246770.1| - 0.0069 16.4 0.0 0.014 15.5 0.0 1.8 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain DJ-1_PfpI PF01965.24 gi|261402546|ref|YP_003246770.1| - 0.16 11.8 0.0 0.37 10.6 0.0 1.6 1 0 0 1 1 1 0 DJ-1/PfpI family Chorismate_synt PF01264.21 gi|261402547|ref|YP_003246771.1| - 2.6e-140 466.8 0.0 3e-140 466.6 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase BCIP PF13862.6 gi|261402547|ref|YP_003246771.1| - 0.024 14.4 0.1 0.037 13.8 0.1 1.2 1 0 0 1 1 1 0 p21-C-terminal region-binding protein FMN_red PF03358.15 gi|261402548|ref|YP_003246772.1| - 5.6e-37 126.9 0.0 6.5e-37 126.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|261402548|ref|YP_003246772.1| - 9.1e-09 35.3 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|261402548|ref|YP_003246772.1| - 0.00086 19.6 0.0 0.0013 19.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|261402549|ref|YP_003246773.1| - 3e-16 59.9 0.0 4.8e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|261402549|ref|YP_003246773.1| - 2.3e-10 40.8 0.0 5e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily PGM_PMM_I PF02878.16 gi|261402549|ref|YP_003246773.1| - 0.0001 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Flavodoxin_5 PF12724.7 gi|261402549|ref|YP_003246773.1| - 0.00015 22.0 0.0 0.00025 21.3 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Lactamase_B_2 PF12706.7 gi|261402549|ref|YP_003246773.1| - 0.00019 21.0 0.0 0.00036 20.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain UPF0160 PF03690.13 gi|261402549|ref|YP_003246773.1| - 0.0016 18.1 0.5 0.0038 16.9 0.5 1.5 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0160) FMN_red PF03358.15 gi|261402549|ref|YP_003246773.1| - 0.013 15.2 0.0 0.48 10.2 0.0 2.2 1 1 0 1 1 1 0 NADPH-dependent FMN reductase DrsE PF02635.15 gi|261402550|ref|YP_003246774.1| - 2.7e-07 30.9 0.0 3.1e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family zinc_ribbon_5 PF13719.6 gi|261402550|ref|YP_003246774.1| - 0.035 13.9 0.4 0.18 11.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain MazE_antitoxin PF04014.18 gi|261402550|ref|YP_003246774.1| - 0.035 14.0 0.2 0.078 12.9 0.1 1.6 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Rubrerythrin PF02915.17 gi|261402551|ref|YP_003246775.1| - 4.9e-38 130.6 12.4 6e-38 130.3 12.4 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|261402551|ref|YP_003246775.1| - 6.3e-09 35.9 5.8 8.2e-09 35.5 5.8 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.12 gi|261402551|ref|YP_003246775.1| - 0.00015 21.8 7.1 0.026 14.5 1.5 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF892) HypA PF01155.19 gi|261402551|ref|YP_003246775.1| - 0.0014 18.7 2.1 0.025 14.6 0.5 2.2 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin PF00301.20 gi|261402551|ref|YP_003246775.1| - 0.013 15.5 3.8 0.35 10.9 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin Peptidase_M55 PF04951.13 gi|261402551|ref|YP_003246775.1| - 0.092 12.1 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 D-aminopeptidase Rubredoxin PF00301.20 gi|261402552|ref|YP_003246776.1| - 2e-23 82.2 4.9 2.8e-23 81.7 4.9 1.2 1 0 0 1 1 1 1 Rubredoxin Zn-ribbon_8 PF09723.10 gi|261402552|ref|YP_003246776.1| - 0.0012 18.9 0.7 0.014 15.5 0.7 2.4 1 1 0 1 1 1 1 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|261402552|ref|YP_003246776.1| - 0.075 12.8 3.3 3 7.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2_4 PF13894.6 gi|261402552|ref|YP_003246776.1| - 0.16 12.9 2.1 5.9 8.0 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_3 PF13878.6 gi|261402552|ref|YP_003246776.1| - 0.17 11.8 1.9 0.4 10.5 0.4 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.11 gi|261402552|ref|YP_003246776.1| - 0.22 11.5 2.4 1.9 8.5 0.8 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Cys_rich_CPCC PF14206.6 gi|261402552|ref|YP_003246776.1| - 0.55 10.1 4.7 0.63 9.9 0.4 2.1 1 1 1 2 2 2 0 Cysteine-rich CPCC zinc_ribbon_10 PF10058.9 gi|261402552|ref|YP_003246776.1| - 0.67 9.7 4.3 10 5.9 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein AhpC-TSA PF00578.21 gi|261402553|ref|YP_003246777.1| - 6.1e-32 110.2 0.0 1e-31 109.4 0.0 1.4 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 gi|261402553|ref|YP_003246777.1| - 7.1e-13 48.5 0.0 1e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|261402553|ref|YP_003246777.1| - 1.7e-12 46.9 0.1 3.5e-12 45.9 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|261402553|ref|YP_003246777.1| - 0.15 12.2 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Zn-ribbon_8 PF09723.10 gi|261402554|ref|YP_003246778.1| - 0.0031 17.6 6.3 0.0031 17.6 6.3 2.0 2 0 0 2 2 2 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|261402554|ref|YP_003246778.1| - 0.011 15.6 0.1 0.011 15.6 0.1 2.5 3 0 0 3 3 2 0 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|261402554|ref|YP_003246778.1| - 0.02 14.9 3.8 0.02 14.9 3.8 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HalOD2 PF18547.1 gi|261402554|ref|YP_003246778.1| - 0.021 14.7 8.6 0.089 12.7 0.2 2.5 1 1 1 2 2 2 0 Halobacterial output domain 2 DZR PF12773.7 gi|261402554|ref|YP_003246778.1| - 0.021 14.8 10.1 0.037 14.1 10.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|261402554|ref|YP_003246778.1| - 0.039 13.5 9.9 0.9 9.1 0.0 2.7 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|261402554|ref|YP_003246778.1| - 0.043 13.2 13.3 1.7 8.1 0.2 2.7 2 1 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|261402554|ref|YP_003246778.1| - 0.045 13.9 0.6 0.045 13.9 0.6 3.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|261402554|ref|YP_003246778.1| - 0.1 12.4 10.4 0.33 10.7 0.5 3.0 3 0 0 3 3 3 0 Rubredoxin metal binding domain OrfB_Zn_ribbon PF07282.11 gi|261402554|ref|YP_003246778.1| - 0.1 12.5 8.3 1.4 8.9 7.0 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Fer4_2 PF12797.7 gi|261402554|ref|YP_003246778.1| - 0.18 12.0 7.9 1.7 8.9 4.6 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain DUF4379 PF14311.6 gi|261402554|ref|YP_003246778.1| - 0.42 11.0 10.8 3.1 8.2 9.9 2.5 1 1 1 2 2 2 0 Probable Zinc-ribbon domain NRDD PF13597.6 gi|261402554|ref|YP_003246778.1| - 0.5 9.1 5.9 0.53 9.0 5.9 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ISL3 PF14690.6 gi|261402554|ref|YP_003246778.1| - 0.75 10.5 8.7 0.93 10.2 2.6 2.5 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|261402554|ref|YP_003246778.1| - 0.79 9.5 16.3 1.8 8.4 3.6 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|261402554|ref|YP_003246778.1| - 0.86 9.4 0.1 0.86 9.4 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.14 gi|261402554|ref|YP_003246778.1| - 1.3 9.0 7.5 0.66 10.0 5.0 1.9 2 1 0 2 2 2 0 Adenylate kinase, active site lid C1_1 PF00130.22 gi|261402554|ref|YP_003246778.1| - 1.5 8.8 9.4 0.8 9.6 0.5 2.2 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.6 gi|261402554|ref|YP_003246778.1| - 1.6 9.3 0.1 1.6 9.3 0.1 2.7 3 0 0 3 3 2 0 Zinc-finger double domain zf-tcix PF14952.6 gi|261402554|ref|YP_003246778.1| - 3.2 7.4 10.0 21 4.8 0.1 2.3 2 1 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_4 PF13717.6 gi|261402554|ref|YP_003246778.1| - 3.2 7.7 12.2 0.75 9.8 0.4 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DUF983 PF06170.12 gi|261402554|ref|YP_003246778.1| - 4.7 7.7 7.3 3.1 8.3 2.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Ogr_Delta PF04606.12 gi|261402554|ref|YP_003246778.1| - 5.3 7.1 11.9 30 4.7 3.1 3.2 2 1 1 3 3 3 0 Ogr/Delta-like zinc finger DUF2072 PF09845.9 gi|261402554|ref|YP_003246778.1| - 6.2 7.1 8.0 8.9 6.6 8.0 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein DUF35_N PF12172.8 gi|261402554|ref|YP_003246778.1| - 8.9 6.3 10.3 13 5.8 2.1 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|261402554|ref|YP_003246778.1| - 9.1 6.4 12.3 6.5 6.8 4.7 2.4 2 1 0 2 2 2 0 Transposase zinc-ribbon domain MTH865 PF07747.11 gi|261402555|ref|YP_003246779.1| - 4.1e-20 71.3 0.2 5.4e-20 70.9 0.2 1.2 1 0 0 1 1 1 1 MTH865-like family V4R PF02830.18 gi|261402556|ref|YP_003246780.1| - 3.2e-18 65.5 1.4 4.4e-18 65.0 1.4 1.2 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|261402556|ref|YP_003246780.1| - 3e-10 40.1 0.1 3.6e-10 39.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2507) MSV199 PF10553.9 gi|261402556|ref|YP_003246780.1| - 0.0045 17.2 0.3 0.0069 16.6 0.3 1.3 1 0 0 1 1 1 1 MSV199 domain MAAL_C PF07476.11 gi|261402556|ref|YP_003246780.1| - 0.035 13.3 0.0 0.051 12.7 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Chlorophyllase PF07224.11 gi|261402556|ref|YP_003246780.1| - 0.081 11.9 0.1 0.11 11.4 0.1 1.2 1 0 0 1 1 1 0 Chlorophyllase ATC_hydrolase PF14196.6 gi|261402556|ref|YP_003246780.1| - 0.13 13.0 3.3 0.32 11.8 3.4 1.8 1 1 0 1 1 1 0 L-2-amino-thiazoline-4-carboxylic acid hydrolase Desulfoferrodox PF01880.18 gi|261402557|ref|YP_003246781.1| - 2.8e-31 108.0 0.2 3.3e-31 107.7 0.2 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin CMD PF02627.20 gi|261402558|ref|YP_003246782.1| - 2.3e-12 46.8 0.0 2.6e-12 46.6 0.0 1.0 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family NAC PF01849.18 gi|261402558|ref|YP_003246782.1| - 0.0011 19.0 0.8 0.0011 19.0 0.8 2.0 2 0 0 2 2 2 1 NAC domain WIYLD PF10440.9 gi|261402558|ref|YP_003246782.1| - 0.07 12.9 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain CCG PF02754.16 gi|261402559|ref|YP_003246783.1| - 2.2e-39 133.5 6.6 4.6e-21 74.8 0.7 2.7 3 0 0 3 3 3 2 Cysteine-rich domain DUF2024 PF09630.10 gi|261402559|ref|YP_003246783.1| - 0.0052 16.6 0.1 0.046 13.6 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2024) Fer4_17 PF13534.6 gi|261402560|ref|YP_003246784.1| - 4.8e-10 39.8 7.9 4.8e-10 39.8 7.9 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402560|ref|YP_003246784.1| - 7e-10 39.2 7.0 1.7e-09 38.0 6.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402560|ref|YP_003246784.1| - 1.5e-09 37.9 7.5 1.5e-09 37.9 7.5 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402560|ref|YP_003246784.1| - 4.5e-09 36.3 7.8 1.3e-08 34.9 6.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261402560|ref|YP_003246784.1| - 3.8e-07 30.6 7.6 8.1e-07 29.5 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402560|ref|YP_003246784.1| - 0.00048 21.0 12.4 0.00068 20.5 9.5 2.4 1 1 1 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|261402560|ref|YP_003246784.1| - 0.0021 18.1 6.0 0.0065 16.6 6.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402560|ref|YP_003246784.1| - 0.0083 16.6 10.5 0.11 13.1 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|261402560|ref|YP_003246784.1| - 0.011 15.5 12.6 0.32 10.9 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|261402560|ref|YP_003246784.1| - 0.47 11.5 16.8 1.6 9.9 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261402560|ref|YP_003246784.1| - 0.51 10.5 16.9 0.3 11.3 3.8 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261402560|ref|YP_003246784.1| - 0.76 10.0 7.5 2.4 8.4 0.8 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402560|ref|YP_003246784.1| - 1.9 8.7 13.3 6.2 7.1 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261402560|ref|YP_003246784.1| - 2 9.0 8.5 2.1 8.9 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|261402560|ref|YP_003246784.1| - 3.2 7.6 9.0 0.45 10.3 1.0 2.3 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|261402560|ref|YP_003246784.1| - 5.6 7.9 12.4 6.7 7.6 0.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain V4R PF02830.18 gi|261402561|ref|YP_003246785.1| - 2.3e-20 72.4 1.7 3.2e-20 71.9 1.7 1.2 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|261402561|ref|YP_003246785.1| - 0.00019 21.3 0.0 0.00037 20.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2507) DUF3937 PF13073.6 gi|261402561|ref|YP_003246785.1| - 0.041 14.0 0.1 0.066 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3937) DUF573 PF04504.14 gi|261402561|ref|YP_003246785.1| - 0.8 10.4 5.1 0.3 11.7 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF573 Rubrerythrin PF02915.17 gi|261402562|ref|YP_003246786.1| - 1.7e-15 57.6 7.5 2.7e-14 53.7 7.1 2.0 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|261402562|ref|YP_003246786.1| - 1.2e-07 31.7 4.2 1.1e-05 25.4 4.1 2.1 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|261402562|ref|YP_003246786.1| - 0.012 15.8 0.6 2.2 8.5 0.2 2.1 2 0 0 2 2 2 0 Ferritin-like domain Haem_oxygenas_2 PF14518.6 gi|261402562|ref|YP_003246786.1| - 0.047 13.5 0.2 0.083 12.7 0.2 1.3 1 1 0 1 1 1 0 Iron-containing redox enzyme FA_desaturase_2 PF03405.14 gi|261402562|ref|YP_003246786.1| - 0.049 12.5 2.0 0.23 10.3 0.4 2.0 1 1 1 2 2 2 0 Fatty acid desaturase Hemerythrin PF01814.23 gi|261402563|ref|YP_003246787.1| - 3.7e-14 53.5 0.6 4.3e-14 53.3 0.6 1.1 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain AsnA PF03590.15 gi|261402563|ref|YP_003246787.1| - 0.0091 15.8 0.8 0.012 15.3 0.8 1.1 1 0 0 1 1 1 1 Aspartate-ammonia ligase 4HB_MCP_1 PF12729.7 gi|261402563|ref|YP_003246787.1| - 0.031 13.8 0.4 0.047 13.2 0.4 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction CRM1_repeat_3 PF18787.1 gi|261402563|ref|YP_003246787.1| - 0.087 13.0 0.1 0.98 9.6 0.0 2.2 2 0 0 2 2 2 0 CRM1 / Exportin repeat 3 PNPase PF03726.14 gi|261402563|ref|YP_003246787.1| - 0.1 13.1 1.9 13 6.4 0.1 2.2 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain Lactamase_B PF00753.27 gi|261402564|ref|YP_003246788.1| - 2.6e-11 43.9 0.1 6.1e-11 42.7 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.25 gi|261402564|ref|YP_003246788.1| - 1e-10 42.0 0.0 2.3e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 Flavodoxin Lactamase_B_2 PF12706.7 gi|261402564|ref|YP_003246788.1| - 0.00019 21.0 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PGM_PMM_I PF02878.16 gi|261402564|ref|YP_003246788.1| - 0.0034 17.1 0.0 0.0089 15.7 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Fer4_5 PF12801.7 gi|261402565|ref|YP_003246789.1| - 8.8e-17 60.8 24.2 1.6e-11 43.9 4.1 3.1 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|261402565|ref|YP_003246789.1| - 6.7e-09 35.2 16.8 9.3e-05 22.1 1.2 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261402565|ref|YP_003246789.1| - 4.8e-06 26.6 14.7 0.0033 17.5 2.1 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261402565|ref|YP_003246789.1| - 5.3e-06 26.9 11.9 0.0013 19.3 1.4 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402565|ref|YP_003246789.1| - 0.00014 22.0 14.3 0.0059 16.7 15.2 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261402565|ref|YP_003246789.1| - 0.00034 20.8 9.7 0.00034 20.8 9.7 2.6 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402565|ref|YP_003246789.1| - 0.0028 17.7 2.4 0.0028 17.7 2.4 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402565|ref|YP_003246789.1| - 0.0029 18.0 11.9 0.24 11.9 1.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402565|ref|YP_003246789.1| - 0.0051 16.8 0.6 0.0051 16.8 0.6 3.5 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402565|ref|YP_003246789.1| - 0.0055 16.8 15.5 0.0055 16.8 15.5 2.9 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402565|ref|YP_003246789.1| - 0.033 14.7 3.9 0.033 14.7 3.9 2.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|261402565|ref|YP_003246789.1| - 0.11 12.7 0.4 0.11 12.7 0.4 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S LRR_3 PF07725.12 gi|261402565|ref|YP_003246789.1| - 0.2 11.6 0.2 0.47 10.4 0.2 1.7 1 0 0 1 1 1 0 Leucine Rich Repeat Fer4_16 PF13484.6 gi|261402565|ref|YP_003246789.1| - 0.3 12.0 19.3 1.2 10.1 2.8 3.5 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_5 PF12801.7 gi|261402566|ref|YP_003246790.1| - 2.9e-20 72.0 33.3 8.4e-15 54.5 1.6 4.1 3 1 1 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|261402566|ref|YP_003246790.1| - 4.8e-06 26.2 16.3 0.0068 16.2 2.0 4.4 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261402566|ref|YP_003246790.1| - 7.7e-05 22.9 9.3 7.7e-05 22.9 9.3 2.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402566|ref|YP_003246790.1| - 0.00014 22.0 14.4 0.0074 16.4 15.3 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402566|ref|YP_003246790.1| - 0.00057 19.9 12.0 0.018 15.1 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261402566|ref|YP_003246790.1| - 0.00084 19.4 11.2 0.0058 16.7 0.9 3.0 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261402566|ref|YP_003246790.1| - 0.0074 16.9 15.9 0.38 11.4 2.4 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402566|ref|YP_003246790.1| - 0.028 14.5 19.8 0.1 12.7 16.4 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402566|ref|YP_003246790.1| - 0.032 14.7 14.8 0.3 11.6 1.9 3.0 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402566|ref|YP_003246790.1| - 0.093 13.3 20.9 0.11 13.0 7.0 3.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402566|ref|YP_003246790.1| - 0.55 11.2 19.0 1.5 9.8 3.0 3.7 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain ETF_QO PF05187.13 gi|261402566|ref|YP_003246790.1| - 0.67 10.1 8.4 0.64 10.2 0.9 2.3 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S LPG_synthase_TM PF03706.13 gi|261402566|ref|YP_003246790.1| - 1.1 8.7 10.0 1.5 8.3 10.0 1.1 1 0 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region EAP30 PF04157.16 gi|261402567|ref|YP_003246791.1| - 0.057 12.7 0.0 0.093 12.0 0.0 1.3 1 1 0 1 1 1 0 EAP30/Vps36 family ubiquitin PF00240.23 gi|261402567|ref|YP_003246791.1| - 0.1 12.4 0.1 0.32 10.8 0.1 1.9 1 1 0 1 1 1 0 Ubiquitin family DUF2202 PF09968.9 gi|261402568|ref|YP_003246792.1| - 1e-77 259.5 2.2 1.3e-77 259.2 2.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) Rubrerythrin PF02915.17 gi|261402568|ref|YP_003246792.1| - 0.00029 21.2 1.2 0.003 17.9 0.8 2.2 1 1 1 2 2 2 1 Rubrerythrin HAD_2 PF13419.6 gi|261402568|ref|YP_003246792.1| - 0.0011 19.1 0.7 0.0082 16.2 0.1 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase MiaE PF06175.11 gi|261402568|ref|YP_003246792.1| - 0.0023 17.6 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) GAGBD PF16828.5 gi|261402568|ref|YP_003246792.1| - 0.0032 17.6 0.5 0.0032 17.6 0.5 1.8 2 0 0 2 2 2 1 GAG-binding domain on surface antigen DUF4223 PF13978.6 gi|261402568|ref|YP_003246792.1| - 0.24 11.4 0.8 0.43 10.6 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4223) LPAM_1 PF08139.12 gi|261402568|ref|YP_003246792.1| - 8.7 7.0 9.4 2.8 8.6 2.8 2.4 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site CW_binding_2 PF04122.12 gi|261402569|ref|YP_003246793.1| - 0.00012 22.7 0.1 0.087 13.5 0.0 2.3 2 0 0 2 2 2 2 Putative cell wall binding repeat 2 Vps39_2 PF10367.9 gi|261402569|ref|YP_003246793.1| - 0.029 14.8 0.2 0.029 14.8 0.2 2.5 2 1 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 Humanin PF15040.6 gi|261402569|ref|YP_003246793.1| - 0.076 12.5 0.5 0.22 11.0 0.5 1.7 1 0 0 1 1 1 0 Humanin family UBA_2 PF08587.11 gi|261402569|ref|YP_003246793.1| - 0.19 11.9 1.3 0.57 10.3 1.3 1.8 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) OAD_gamma PF04277.13 gi|261402570|ref|YP_003246794.1| - 0.054 14.1 1.2 0.054 14.1 1.2 1.1 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain DUF166 PF02593.14 gi|261402572|ref|YP_003246796.1| - 3.2e-73 245.9 2.5 3.6e-73 245.7 2.5 1.0 1 0 0 1 1 1 1 Domain of unknown function CDI PF02234.19 gi|261402572|ref|YP_003246796.1| - 0.09 13.0 0.1 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 Cyclin-dependent kinase inhibitor Chordopox_E11 PF06138.12 gi|261402572|ref|YP_003246796.1| - 0.091 13.1 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 Chordopoxvirus E11 protein AA_permease_2 PF13520.6 gi|261402574|ref|YP_003246798.1| - 2.6e-35 122.1 52.1 3.8e-35 121.6 52.1 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|261402574|ref|YP_003246798.1| - 2.5e-22 79.2 53.2 5.2e-22 78.1 53.2 1.6 1 1 0 1 1 1 1 Amino acid permease SepSecS PF05889.13 gi|261402575|ref|YP_003246799.1| - 3.8e-161 536.1 0.1 4.4e-161 535.9 0.1 1.0 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|261402575|ref|YP_003246799.1| - 6.1e-09 35.6 0.0 7.9e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|261402575|ref|YP_003246799.1| - 0.0093 14.7 0.0 0.015 14.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain MGS PF02142.22 gi|261402575|ref|YP_003246799.1| - 0.066 13.4 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 MGS-like domain Rhomboid PF01694.22 gi|261402576|ref|YP_003246800.1| - 2.7e-33 115.1 15.5 2.7e-33 115.1 15.5 1.4 1 1 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|261402576|ref|YP_003246800.1| - 8.6e-10 39.1 1.7 8.6e-10 39.1 1.7 2.1 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Peptidase_M50 PF02163.22 gi|261402577|ref|YP_003246801.1| - 2.1e-07 30.5 11.7 0.001 18.4 0.3 3.2 2 1 1 3 3 3 3 Peptidase family M50 Met_10 PF02475.16 gi|261402578|ref|YP_003246802.1| - 6.7e-74 248.0 1.5 8.1e-74 247.7 1.5 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|261402578|ref|YP_003246802.1| - 0.00018 21.1 0.0 0.00054 19.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|261402578|ref|YP_003246802.1| - 0.0017 17.8 0.0 0.0036 16.7 0.0 1.4 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|261402578|ref|YP_003246802.1| - 0.0023 17.5 0.1 0.0039 16.8 0.1 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|261402578|ref|YP_003246802.1| - 0.0025 18.5 0.0 0.0069 17.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261402578|ref|YP_003246802.1| - 0.0029 17.6 0.6 0.0059 16.6 0.2 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|261402578|ref|YP_003246802.1| - 0.003 17.0 0.2 0.021 14.3 0.0 2.0 1 1 1 2 2 2 1 Putative methyltransferase GidB PF02527.15 gi|261402578|ref|YP_003246802.1| - 0.0045 16.3 0.2 0.0097 15.2 0.0 1.6 2 0 0 2 2 2 1 rRNA small subunit methyltransferase G Methyltr_RsmB-F PF01189.17 gi|261402578|ref|YP_003246802.1| - 0.012 15.2 0.0 0.31 10.6 0.0 2.2 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F PRMT5 PF05185.16 gi|261402578|ref|YP_003246802.1| - 0.042 13.7 0.0 0.082 12.8 0.0 1.5 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase PDCD9 PF07147.12 gi|261402578|ref|YP_003246802.1| - 0.15 11.3 1.0 0.2 10.9 1.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S30 (PDCD9) TPR_2 PF07719.17 gi|261402579|ref|YP_003246803.1| - 4.4e-13 48.2 19.8 0.03 14.4 0.1 8.4 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_1 PF00515.28 gi|261402579|ref|YP_003246803.1| - 5.1e-11 41.9 28.2 0.012 15.4 1.0 7.9 7 1 1 8 8 8 6 Tetratricopeptide repeat TPR_7 PF13176.6 gi|261402579|ref|YP_003246803.1| - 2.7e-07 30.2 3.9 0.016 15.2 0.1 4.8 5 1 1 6 6 5 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261402579|ref|YP_003246803.1| - 8e-07 28.8 25.6 0.011 15.9 0.1 8.0 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|261402579|ref|YP_003246803.1| - 9.1e-07 29.1 2.3 1.2 9.4 0.1 4.8 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|261402579|ref|YP_003246803.1| - 1.1e-06 29.0 8.2 0.49 10.9 0.5 5.9 5 1 1 6 6 6 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|261402579|ref|YP_003246803.1| - 0.00023 21.7 3.5 11 7.2 0.0 6.1 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_17 PF13431.6 gi|261402579|ref|YP_003246803.1| - 0.00035 20.7 9.2 0.033 14.6 1.0 5.4 6 0 0 6 6 5 1 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261402579|ref|YP_003246803.1| - 0.00047 19.8 13.7 0.2 11.4 1.0 5.9 6 0 0 6 6 6 2 TPR repeat TPR_10 PF13374.6 gi|261402579|ref|YP_003246803.1| - 0.0034 17.2 5.1 3.1 7.8 0.1 4.4 5 0 0 5 5 5 2 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|261402579|ref|YP_003246803.1| - 0.013 15.5 0.3 0.013 15.5 0.3 5.7 6 0 0 6 6 5 0 Fis1 C-terminal tetratricopeptide repeat SPOB_a PF14689.6 gi|261402579|ref|YP_003246803.1| - 0.021 14.5 0.1 0.53 10.0 0.1 2.6 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain TPR_6 PF13174.6 gi|261402579|ref|YP_003246803.1| - 0.037 14.7 8.8 2.7 8.8 0.1 5.4 5 0 0 5 5 5 0 Tetratricopeptide repeat SapB_2 PF03489.17 gi|261402579|ref|YP_003246803.1| - 0.037 14.1 1.3 0.31 11.2 0.0 3.1 4 0 0 4 4 4 0 Saposin-like type B, region 2 SMBP PF16785.5 gi|261402579|ref|YP_003246803.1| - 0.13 12.5 0.0 44 4.3 0.0 3.1 3 0 0 3 3 3 0 Small metal-binding protein Radical_SAM PF04055.21 gi|261402581|ref|YP_003246805.1| - 2.8e-11 44.1 2.1 8e-11 42.6 2.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|261402581|ref|YP_003246805.1| - 0.00017 21.9 2.9 0.00049 20.4 2.3 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|261402581|ref|YP_003246805.1| - 0.001 19.2 1.1 0.0019 18.3 0.4 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|261402581|ref|YP_003246805.1| - 0.0083 16.6 0.5 0.026 15.0 0.5 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Phage_DsbA PF11126.8 gi|261402581|ref|YP_003246805.1| - 0.026 14.7 1.2 0.047 13.9 0.4 1.9 2 0 0 2 2 2 0 Transcriptional regulator DsbA HMGL-like PF00682.19 gi|261402581|ref|YP_003246805.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 HMGL-like DNA_ligase_A_M PF01068.21 gi|261402581|ref|YP_003246805.1| - 0.05 13.2 0.1 0.092 12.4 0.1 1.5 1 0 0 1 1 1 0 ATP dependent DNA ligase domain PHP PF02811.19 gi|261402581|ref|YP_003246805.1| - 0.18 12.1 0.1 0.47 10.7 0.1 1.7 1 1 0 1 1 1 0 PHP domain AP_endonuc_2 PF01261.24 gi|261402581|ref|YP_003246805.1| - 0.18 11.2 0.0 0.4 10.1 0.0 1.6 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF2070 PF09843.9 gi|261402584|ref|YP_003246808.1| - 8.3 4.6 19.9 11 4.2 19.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) NIF3 PF01784.18 gi|261402585|ref|YP_003246809.1| - 1.6e-54 185.1 0.1 2e-54 184.8 0.1 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Fer4 PF00037.27 gi|261402586|ref|YP_003246810.1| - 3.4e-13 48.8 14.6 1.9e-07 30.6 3.2 2.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402586|ref|YP_003246810.1| - 2.2e-08 34.0 8.5 3.1e-05 24.0 1.1 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402586|ref|YP_003246810.1| - 6.4e-08 32.2 11.8 7.4e-05 22.6 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261402586|ref|YP_003246810.1| - 1.6e-07 31.3 11.8 2.2e-07 30.9 11.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402586|ref|YP_003246810.1| - 2.6e-07 30.4 12.9 2e-05 24.5 3.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402586|ref|YP_003246810.1| - 2.6e-07 31.1 10.9 6.7e-07 29.8 11.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402586|ref|YP_003246810.1| - 4e-06 27.7 9.8 0.0052 17.7 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|261402586|ref|YP_003246810.1| - 0.00011 22.3 11.1 0.0013 18.9 11.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261402586|ref|YP_003246810.1| - 0.00043 21.0 6.9 0.17 12.6 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|261402586|ref|YP_003246810.1| - 0.0063 16.9 12.4 0.058 13.9 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261402586|ref|YP_003246810.1| - 0.025 15.1 10.0 0.11 13.0 2.6 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|261402586|ref|YP_003246810.1| - 0.028 14.9 11.9 0.81 10.3 3.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402586|ref|YP_003246810.1| - 0.042 14.3 12.8 0.44 11.0 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261402586|ref|YP_003246810.1| - 0.076 14.0 3.5 0.076 14.0 3.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261402586|ref|YP_003246810.1| - 0.91 9.7 12.3 0.63 10.3 2.9 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|261402587|ref|YP_003246811.1| - 1.8e-16 60.3 0.1 9e-09 35.0 0.0 2.3 2 1 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|261402587|ref|YP_003246811.1| - 6.1e-10 38.5 0.6 6.3e-06 25.3 0.0 2.4 1 1 2 3 3 3 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|261402587|ref|YP_003246811.1| - 2.3e-08 33.9 2.8 5.3e-08 32.6 2.8 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|261402587|ref|YP_003246811.1| - 5.1e-07 28.7 1.4 2.8e-06 26.3 0.1 2.4 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|261402587|ref|YP_003246811.1| - 8.8e-07 28.3 0.3 8.8e-07 28.3 0.3 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|261402587|ref|YP_003246811.1| - 5.6e-06 25.7 0.8 1.1e-05 24.7 0.3 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|261402587|ref|YP_003246811.1| - 1.4e-05 24.5 4.4 0.00043 19.6 0.2 2.5 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|261402587|ref|YP_003246811.1| - 1.6e-05 24.1 0.0 0.0001 21.5 0.0 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|261402587|ref|YP_003246811.1| - 1.8e-05 24.5 0.5 0.039 13.5 0.1 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|261402587|ref|YP_003246811.1| - 1.8e-05 24.1 0.1 6.8e-05 22.2 0.1 1.9 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|261402587|ref|YP_003246811.1| - 3.5e-05 23.9 0.0 8e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain SE PF08491.10 gi|261402587|ref|YP_003246811.1| - 0.0069 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Squalene epoxidase Pyr_redox_3 PF13738.6 gi|261402587|ref|YP_003246811.1| - 0.027 13.7 1.2 0.094 11.9 1.2 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Big_3_4 PF13754.6 gi|261402587|ref|YP_003246811.1| - 0.092 12.5 0.0 0.59 9.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function PQQ_3 PF13570.6 gi|261402587|ref|YP_003246811.1| - 2.1 8.9 4.0 0.76 10.3 0.5 2.1 2 0 0 2 2 2 0 PQQ-like domain Usp PF00582.26 gi|261402588|ref|YP_003246812.1| - 1.8e-41 141.9 0.9 2.1e-41 141.8 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family Glycos_transf_1 PF00534.20 gi|261402588|ref|YP_003246812.1| - 0.004 16.7 0.1 0.0063 16.1 0.1 1.5 1 1 0 1 1 1 1 Glycosyl transferases group 1 PTS_IIB PF02302.17 gi|261402588|ref|YP_003246812.1| - 0.034 14.8 0.3 0.084 13.6 0.1 1.7 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit DXP_reductoisom PF02670.16 gi|261402588|ref|YP_003246812.1| - 0.047 14.4 0.3 0.063 14.0 0.3 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Histone_HNS PF00816.21 gi|261402588|ref|YP_003246812.1| - 0.062 14.1 0.1 0.1 13.4 0.1 1.4 1 0 0 1 1 1 0 H-NS histone family AP_endonuc_2 PF01261.24 gi|261402588|ref|YP_003246812.1| - 0.089 12.2 0.1 0.19 11.2 0.1 1.5 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-ZPR1 PF03367.13 gi|261402589|ref|YP_003246813.1| - 1.4e-38 132.2 0.0 1.7e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Prim_Zn_Ribbon PF08273.12 gi|261402589|ref|YP_003246813.1| - 0.0015 18.8 0.6 0.0031 17.7 0.6 1.5 1 1 0 1 1 1 1 Zinc-binding domain of primase-helicase DnaJ_CXXCXGXG PF00684.19 gi|261402589|ref|YP_003246813.1| - 0.0034 17.7 0.1 0.0058 17.0 0.1 1.4 1 0 0 1 1 1 1 DnaJ central domain Lar_restr_allev PF14354.6 gi|261402589|ref|YP_003246813.1| - 0.024 15.0 0.1 0.06 13.7 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar Hrs_helical PF12210.8 gi|261402589|ref|YP_003246813.1| - 0.044 14.3 0.2 0.09 13.3 0.2 1.5 1 0 0 1 1 1 0 Hepatocyte growth factor-regulated tyrosine kinase substrate HTH_3 PF01381.22 gi|261402590|ref|YP_003246814.1| - 2.9e-10 40.1 0.4 6e-10 39.0 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|261402590|ref|YP_003246814.1| - 1.7e-07 31.2 1.5 2.8e-07 30.4 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|261402590|ref|YP_003246814.1| - 2.8e-05 24.0 0.9 6.1e-05 22.9 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|261402590|ref|YP_003246814.1| - 3.7e-05 24.0 0.0 7.3e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|261402590|ref|YP_003246814.1| - 0.006 16.4 0.1 0.02 14.8 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HNF-1_N PF04814.13 gi|261402590|ref|YP_003246814.1| - 0.014 16.0 0.0 0.026 15.1 0.0 1.3 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus YdaS_antitoxin PF15943.5 gi|261402590|ref|YP_003246814.1| - 0.015 15.1 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 gi|261402590|ref|YP_003246814.1| - 0.026 15.0 0.1 0.058 13.8 0.1 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|261402590|ref|YP_003246814.1| - 0.028 14.5 0.0 0.082 13.0 0.0 1.8 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA NiFe_hyd_3_EhaA PF17367.2 gi|261402591|ref|YP_003246815.1| - 1.9e-27 95.2 2.8 2.1e-27 95.1 2.8 1.0 1 0 0 1 1 1 1 NiFe-hydrogenase-type-3 Eha complex subunit A FeoB_C PF07664.12 gi|261402591|ref|YP_003246815.1| - 0.045 13.4 1.9 0.53 10.0 0.3 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus FtsX PF02687.21 gi|261402591|ref|YP_003246815.1| - 0.25 11.8 4.4 2.8 8.5 1.6 2.0 1 1 1 2 2 2 0 FtsX-like permease family DUF2109 PF09882.9 gi|261402593|ref|YP_003246817.1| - 1.2e-34 118.2 3.8 1.3e-34 118.0 3.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2109) DUF4131 PF13567.6 gi|261402593|ref|YP_003246817.1| - 0.0011 18.6 1.3 0.0012 18.5 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) CarS-like PF01864.17 gi|261402593|ref|YP_003246817.1| - 0.034 14.1 0.8 0.047 13.7 0.8 1.3 1 1 0 1 1 1 0 CDP-archaeol synthase DUF3488 PF11992.8 gi|261402593|ref|YP_003246817.1| - 0.21 10.5 1.8 0.21 10.5 1.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) DUF4282 PF14110.6 gi|261402593|ref|YP_003246817.1| - 0.99 10.2 6.6 5.5 7.8 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF2108 PF09881.9 gi|261402594|ref|YP_003246818.1| - 3.7e-27 94.1 9.7 4.4e-27 93.8 9.7 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2108) DUF2107 PF09880.9 gi|261402595|ref|YP_003246819.1| - 2.7e-31 107.5 4.6 3.2e-31 107.2 4.6 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) DUF2106 PF09879.9 gi|261402596|ref|YP_003246820.1| - 1.1e-71 239.3 0.4 1.3e-71 239.1 0.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2106) DUF2105 PF09878.9 gi|261402597|ref|YP_003246821.1| - 2.3e-83 278.9 11.9 2.6e-83 278.7 11.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2105) DUF2232 PF09991.9 gi|261402597|ref|YP_003246821.1| - 0.046 12.9 0.0 0.046 12.9 0.0 2.7 3 1 0 3 3 3 0 Predicted membrane protein (DUF2232) NADHdeh_related PF10125.9 gi|261402598|ref|YP_003246822.1| - 1e-102 342.2 12.9 1.1e-102 342.0 12.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase I, subunit N related protein NAD_binding_1 PF00175.21 gi|261402598|ref|YP_003246822.1| - 0.053 14.2 0.0 4.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase NAD-binding domain Wzy_C PF04932.15 gi|261402598|ref|YP_003246822.1| - 0.52 9.9 4.7 1.4 8.5 4.7 1.9 1 1 0 1 1 1 0 O-Antigen ligase DUF4199 PF13858.6 gi|261402599|ref|YP_003246823.1| - 0.029 14.8 2.0 0.034 14.6 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) NADHdh PF00146.21 gi|261402600|ref|YP_003246824.1| - 3.2e-31 108.8 18.5 4e-31 108.5 18.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase SARAF PF06682.12 gi|261402601|ref|YP_003246825.1| - 0.45 10.1 1.5 0.38 10.3 0.5 1.4 1 1 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis PRA1 PF03208.19 gi|261402601|ref|YP_003246825.1| - 1.6 8.3 10.8 2 8.1 10.8 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF2104 PF09877.9 gi|261402602|ref|YP_003246826.1| - 1.1e-31 109.1 5.9 1.4e-31 108.7 5.9 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2104) LptF_LptG PF03739.14 gi|261402602|ref|YP_003246826.1| - 0.0036 16.2 2.1 0.0036 16.2 2.1 1.5 1 1 0 1 1 1 1 Lipopolysaccharide export system permease LptF/LptG DUF751 PF05421.11 gi|261402602|ref|YP_003246826.1| - 0.07 13.9 1.9 0.14 12.9 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF751) Matrix PF00661.21 gi|261402602|ref|YP_003246826.1| - 0.22 10.2 0.0 0.26 9.9 0.0 1.1 1 0 0 1 1 1 0 Viral matrix protein DUF1959 PF09218.10 gi|261402603|ref|YP_003246827.1| - 6.7e-50 168.1 0.7 8.4e-50 167.7 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1959) Oxidored_q6 PF01058.22 gi|261402604|ref|YP_003246828.1| - 5.6e-30 103.9 0.4 7e-30 103.5 0.4 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|261402605|ref|YP_003246829.1| - 8.1e-48 162.9 1.8 1.4e-39 135.9 0.6 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|261402605|ref|YP_003246829.1| - 3.6e-13 49.2 3.2 3.6e-13 49.2 3.2 3.7 2 2 1 3 3 3 1 Nickel-dependent hydrogenase GP3_package PF16677.5 gi|261402605|ref|YP_003246829.1| - 0.17 12.0 0.1 7.8 6.7 0.0 2.5 2 0 0 2 2 2 0 DNA-packaging protein gp3 Fur_reg_FbpB PF13040.6 gi|261402605|ref|YP_003246829.1| - 0.21 11.2 2.7 0.69 9.5 2.7 1.9 1 0 0 1 1 1 0 Fur-regulated basic protein B Fer4 PF00037.27 gi|261402606|ref|YP_003246830.1| - 1.1e-38 129.5 83.1 1e-06 28.3 2.2 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402606|ref|YP_003246830.1| - 1.3e-35 121.7 117.1 5e-10 39.8 13.1 5.6 2 2 5 7 7 7 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402606|ref|YP_003246830.1| - 2.6e-25 89.1 59.6 5.8e-05 23.9 8.2 7.5 6 2 1 7 7 7 7 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|261402606|ref|YP_003246830.1| - 3.4e-25 87.0 81.1 0.00014 21.8 3.8 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402606|ref|YP_003246830.1| - 5e-25 87.4 71.5 1.2e-07 31.7 13.6 7.2 2 2 6 8 8 8 8 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402606|ref|YP_003246830.1| - 1.7e-23 82.5 71.4 2.5e-07 30.7 14.1 5.3 3 1 3 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402606|ref|YP_003246830.1| - 4e-23 81.3 62.2 7.5e-08 32.4 11.8 5.7 2 2 3 7 7 7 7 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402606|ref|YP_003246830.1| - 7.8e-20 69.7 76.1 0.0028 17.7 3.1 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261402606|ref|YP_003246830.1| - 3.4e-15 56.3 62.1 0.00029 21.3 7.7 7.7 2 2 7 9 9 9 8 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402606|ref|YP_003246830.1| - 5.9e-15 55.5 60.9 4.1e-05 23.9 3.8 6.4 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261402606|ref|YP_003246830.1| - 2.7e-09 37.2 64.3 4.3e-05 23.7 11.0 5.6 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402606|ref|YP_003246830.1| - 3e-08 33.6 80.0 0.071 13.6 5.2 8.3 7 1 0 8 8 8 5 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261402606|ref|YP_003246830.1| - 0.0013 19.2 75.7 0.0046 17.5 1.7 8.5 7 1 1 8 8 8 5 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|261402606|ref|YP_003246830.1| - 0.0045 17.8 88.5 0.13 13.3 5.8 8.3 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261402606|ref|YP_003246830.1| - 0.016 16.1 70.3 0.21 12.4 0.5 8.4 4 4 3 8 8 8 0 4Fe-4S dicluster domain PDZ_4 PF17816.1 gi|261402606|ref|YP_003246830.1| - 0.029 14.8 0.1 2.1 8.8 0.0 2.7 2 1 1 3 3 3 0 PDZ domain Fer4 PF00037.27 gi|261402607|ref|YP_003246831.1| - 6.9e-30 101.7 38.2 8.5e-10 38.0 5.3 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261402607|ref|YP_003246831.1| - 5.5e-22 76.9 33.3 2e-06 27.6 3.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402607|ref|YP_003246831.1| - 1.7e-19 69.6 31.3 2.3e-07 30.8 10.2 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261402607|ref|YP_003246831.1| - 4.5e-19 68.8 29.6 2.4e-11 44.0 12.8 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402607|ref|YP_003246831.1| - 8.1e-19 66.5 26.6 7.4e-07 28.9 1.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261402607|ref|YP_003246831.1| - 2.9e-18 65.8 26.8 1.2e-10 41.4 10.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402607|ref|YP_003246831.1| - 1.3e-16 61.3 31.8 4e-06 27.7 1.9 4.2 2 2 2 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|261402607|ref|YP_003246831.1| - 5.5e-16 58.4 33.0 1.1e-10 41.4 13.8 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402607|ref|YP_003246831.1| - 7e-08 32.4 37.1 0.0017 18.7 4.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261402607|ref|YP_003246831.1| - 9.7e-08 32.4 35.5 0.015 15.8 2.9 4.1 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261402607|ref|YP_003246831.1| - 2.7e-07 31.0 41.0 0.0016 19.3 5.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402607|ref|YP_003246831.1| - 4.8e-07 30.1 36.8 0.08 13.4 15.3 4.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261402607|ref|YP_003246831.1| - 4.8e-06 27.0 29.0 0.0082 16.7 2.4 4.3 4 0 0 4 4 4 4 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|261402607|ref|YP_003246831.1| - 0.00014 22.5 26.1 0.32 11.8 1.2 4.9 4 1 0 4 4 4 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|261402607|ref|YP_003246831.1| - 0.00051 20.8 30.9 0.011 16.6 2.0 4.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261402607|ref|YP_003246831.1| - 0.065 13.4 29.8 0.47 10.7 2.2 4.0 1 1 3 4 4 4 0 4Fe-4S dicluster domain COX2 PF00116.20 gi|261402607|ref|YP_003246831.1| - 1.4 8.8 5.9 1.7 8.6 0.2 2.9 2 1 1 3 3 3 0 Cytochrome C oxidase subunit II, periplasmic domain Fer4 PF00037.27 gi|261402608|ref|YP_003246832.1| - 2.8e-48 159.9 67.9 9.6e-11 41.0 4.3 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402608|ref|YP_003246832.1| - 5.5e-35 119.7 98.0 3.8e-09 37.0 15.6 4.5 2 1 4 6 6 6 6 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402608|ref|YP_003246832.1| - 2.5e-33 112.8 63.8 1.3e-08 34.5 3.8 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261402608|ref|YP_003246832.1| - 3.1e-30 104.1 58.4 7.8e-11 41.9 14.0 3.8 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402608|ref|YP_003246832.1| - 8.1e-28 97.2 48.3 5.7e-05 24.0 1.7 6.2 5 1 1 6 6 6 6 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261402608|ref|YP_003246832.1| - 9.6e-28 94.6 48.9 4.1e-06 26.6 2.2 6.3 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402608|ref|YP_003246832.1| - 1e-25 89.6 99.7 3.8e-07 30.1 12.0 5.3 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402608|ref|YP_003246832.1| - 1.3e-24 86.1 89.2 2.2e-08 34.1 11.1 4.1 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402608|ref|YP_003246832.1| - 2.1e-12 46.5 62.2 0.00057 20.2 3.4 6.2 6 0 0 6 6 6 5 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261402608|ref|YP_003246832.1| - 3.1e-12 46.8 50.3 0.00046 20.7 8.9 5.6 2 2 4 6 6 6 6 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402608|ref|YP_003246832.1| - 5.3e-12 46.0 55.2 0.0058 17.1 11.7 5.8 2 2 4 6 6 5 5 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261402608|ref|YP_003246832.1| - 4.2e-11 43.2 49.7 0.025 15.1 1.9 6.8 6 0 0 6 6 6 6 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|261402608|ref|YP_003246832.1| - 1.2e-09 38.4 74.2 0.0012 19.7 4.5 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261402608|ref|YP_003246832.1| - 3.1e-09 37.6 45.0 0.1 13.5 1.4 6.1 3 1 5 8 8 8 8 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261402608|ref|YP_003246832.1| - 1.8e-08 35.0 52.8 0.03 15.0 1.3 7.1 5 2 1 6 6 6 5 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|261402608|ref|YP_003246832.1| - 0.00061 20.0 52.8 0.67 10.2 13.4 5.3 1 1 4 5 5 4 4 4Fe-4S dicluster domain NAD_binding_7 PF13241.6 gi|261402609|ref|YP_003246833.1| - 2.1e-20 73.1 0.2 3.9e-20 72.2 0.1 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|261402609|ref|YP_003246833.1| - 6e-07 29.8 0.3 1.4e-06 28.6 0.1 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|261402609|ref|YP_003246833.1| - 0.00021 20.6 0.0 0.00047 19.5 0.0 1.5 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|261402609|ref|YP_003246833.1| - 0.0024 17.9 0.1 0.0052 16.9 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|261402609|ref|YP_003246833.1| - 0.0072 16.2 0.0 0.066 13.1 0.0 2.0 1 1 1 2 2 2 1 NAD(P)H-binding DUF1340 PF07067.11 gi|261402609|ref|YP_003246833.1| - 0.0082 15.5 0.1 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1340) NAD_Gly3P_dh_N PF01210.23 gi|261402609|ref|YP_003246833.1| - 0.011 15.7 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|261402609|ref|YP_003246833.1| - 0.012 15.9 0.1 0.021 15.1 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.21 gi|261402609|ref|YP_003246833.1| - 0.019 14.3 1.4 2.2 7.6 0.0 2.1 2 0 0 2 2 2 0 ThiF family F420_oxidored PF03807.17 gi|261402609|ref|YP_003246833.1| - 0.023 15.3 0.1 0.053 14.1 0.0 1.7 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|261402609|ref|YP_003246833.1| - 0.048 13.2 0.2 0.1 12.2 0.2 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|261402609|ref|YP_003246833.1| - 0.067 12.5 0.3 0.19 11.1 0.3 1.8 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LEM PF03020.15 gi|261402609|ref|YP_003246833.1| - 0.092 12.3 1.0 0.21 11.2 0.0 2.0 2 0 0 2 2 2 0 LEM domain CysG_dimeriser PF10414.9 gi|261402609|ref|YP_003246833.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region Sirohm_synth_M PF14824.6 gi|261402609|ref|YP_003246833.1| - 0.15 11.6 0.0 0.39 10.2 0.0 1.7 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central DHBP_synthase PF00926.19 gi|261402610|ref|YP_003246834.1| - 7.6e-66 221.3 0.0 8.7e-66 221.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase UPF0270 PF06794.12 gi|261402610|ref|YP_003246834.1| - 0.14 12.3 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0270) CTP-dep_RFKase PF01982.16 gi|261402611|ref|YP_003246835.1| - 2.8e-38 130.7 0.1 3.2e-38 130.5 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 Thioredoxin_2 PF13098.6 gi|261402611|ref|YP_003246835.1| - 0.024 15.1 0.1 0.032 14.7 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Na_H_Exchanger PF00999.21 gi|261402612|ref|YP_003246836.1| - 2.3e-54 184.7 34.1 3.1e-54 184.2 34.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF211 PF02680.14 gi|261402613|ref|YP_003246837.1| - 7.4e-40 135.0 3.3 8.2e-40 134.9 3.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 PilN PF05137.13 gi|261402613|ref|YP_003246837.1| - 0.11 12.6 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Fimbrial assembly protein (PilN) DUF2730 PF10805.8 gi|261402613|ref|YP_003246837.1| - 0.12 12.4 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) FTR_C PF02741.15 gi|261402614|ref|YP_003246838.1| - 8.3e-67 223.8 4.6 1.3e-66 223.2 4.6 1.3 1 0 0 1 1 1 1 FTR, proximal lobe FTR PF01913.18 gi|261402614|ref|YP_003246838.1| - 3.1e-66 221.7 1.7 1.4e-65 219.6 0.0 2.5 3 0 0 3 3 3 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase DUF5461 PF17545.2 gi|261402615|ref|YP_003246839.1| - 0.011 16.0 0.5 0.086 13.2 0.0 2.4 3 0 0 3 3 3 0 Family of unknown function (DUF5461) PvlArgDC PF01862.16 gi|261402616|ref|YP_003246840.1| - 5.3e-47 159.6 0.0 6e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AdoMet_dc PF02675.15 gi|261402617|ref|YP_003246841.1| - 7.4e-40 135.5 0.0 8.4e-40 135.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Spermine_synth PF01564.17 gi|261402618|ref|YP_003246842.1| - 1.1e-70 236.9 0.2 1.4e-70 236.5 0.2 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|261402618|ref|YP_003246842.1| - 2.1e-23 82.0 0.5 2.1e-23 82.0 0.5 2.1 2 0 0 2 2 2 1 Spermidine synthase tetramerisation domain Methyltransf_PK PF05891.12 gi|261402618|ref|YP_003246842.1| - 0.00049 19.7 0.2 0.001 18.7 0.2 1.6 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_12 PF08242.12 gi|261402618|ref|YP_003246842.1| - 0.0028 18.4 0.0 0.019 15.7 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|261402618|ref|YP_003246842.1| - 0.003 17.5 0.0 0.019 14.8 0.0 2.2 1 1 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|261402618|ref|YP_003246842.1| - 0.0045 16.3 0.0 0.0088 15.4 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|261402618|ref|YP_003246842.1| - 0.0078 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|261402618|ref|YP_003246842.1| - 0.0082 16.8 0.0 0.016 15.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain DUF3800 PF12686.7 gi|261402618|ref|YP_003246842.1| - 0.011 16.4 0.0 8.6 7.0 0.0 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF3800) ssDNA-exonuc_C PF10141.9 gi|261402618|ref|YP_003246842.1| - 0.051 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Single-strand DNA-specific exonuclease, C terminal domain MTS PF05175.14 gi|261402618|ref|YP_003246842.1| - 0.061 12.9 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain AAA_31 PF13614.6 gi|261402618|ref|YP_003246842.1| - 0.1 12.5 1.3 0.2 11.5 0.1 2.2 2 0 0 2 2 2 0 AAA domain LAGLIDADG_3 PF14528.6 gi|261402619|ref|YP_003246843.1| - 0.071 13.4 0.1 1.9 8.9 0.0 2.3 2 0 0 2 2 2 0 LAGLIDADG-like domain Robl_LC7 PF03259.17 gi|261402620|ref|YP_003246844.1| - 7.6e-24 83.3 1.1 9.4e-24 83.0 1.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|261402620|ref|YP_003246844.1| - 0.0069 16.2 0.0 0.0078 16.0 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting ATP_bind_3 PF01171.20 gi|261402621|ref|YP_003246845.1| - 3.5e-16 59.5 0.0 1.9e-14 53.8 0.0 2.6 2 1 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|261402621|ref|YP_003246845.1| - 0.0015 17.4 0.0 0.0021 16.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase GATase_3 PF07685.14 gi|261402622|ref|YP_003246846.1| - 1.8e-48 164.8 0.1 3e-48 164.1 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|261402622|ref|YP_003246846.1| - 2.5e-26 92.2 0.1 6.6e-26 90.9 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|261402622|ref|YP_003246846.1| - 2e-23 83.3 0.4 1.8e-22 80.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain DJ-1_PfpI PF01965.24 gi|261402622|ref|YP_003246846.1| - 0.00031 20.6 0.0 0.0011 18.8 0.0 1.8 2 0 0 2 2 2 1 DJ-1/PfpI family MobB PF03205.14 gi|261402622|ref|YP_003246846.1| - 0.00039 20.3 0.1 0.0022 17.9 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SNO PF01174.19 gi|261402622|ref|YP_003246846.1| - 0.0072 16.2 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 SNO glutamine amidotransferase family BPL_N PF09825.9 gi|261402622|ref|YP_003246846.1| - 0.013 14.6 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal DUF1611 PF07755.11 gi|261402622|ref|YP_003246846.1| - 0.024 13.9 0.0 0.58 9.4 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_31 PF13614.6 gi|261402622|ref|YP_003246846.1| - 0.037 13.9 0.2 0.12 12.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain GATase_5 PF13507.6 gi|261402622|ref|YP_003246846.1| - 0.11 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain VirC1 PF07015.11 gi|261402622|ref|YP_003246846.1| - 0.19 11.0 0.0 0.34 10.2 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein DUF553 PF04473.12 gi|261402623|ref|YP_003246847.1| - 1.9e-37 128.1 3.2 5.8e-37 126.6 3.2 1.8 1 1 0 1 1 1 1 Transglutaminase-like domain S_layer_C PF05124.12 gi|261402623|ref|YP_003246847.1| - 5.6e-06 26.5 3.7 1.3e-05 25.3 0.1 2.7 2 1 1 3 3 3 1 S-layer like family, C-terminal region Transglut_core PF01841.19 gi|261402623|ref|YP_003246847.1| - 2.2e-05 24.9 0.0 3.8e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily HobA PF12163.8 gi|261402623|ref|YP_003246847.1| - 0.021 14.4 0.0 4.3 6.9 0.0 2.4 2 0 0 2 2 2 0 DNA replication regulator PTPS PF01242.19 gi|261402623|ref|YP_003246847.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 6-pyruvoyl tetrahydropterin synthase Peptidase_A24 PF01478.18 gi|261402624|ref|YP_003246848.1| - 8.2e-19 68.0 22.3 6.6e-18 65.1 22.3 2.2 1 1 0 1 1 1 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|261402624|ref|YP_003246848.1| - 1.8e-06 28.4 0.4 1.8e-06 28.4 0.4 2.1 2 1 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II T2SSF PF00482.23 gi|261402628|ref|YP_003246852.1| - 1.3e-25 89.7 0.9 3.4e-15 56.1 0.1 4.6 3 1 1 4 4 4 2 Type II secretion system (T2SS), protein F DUF3566 PF12089.8 gi|261402628|ref|YP_003246852.1| - 0.61 10.5 0.0 0.61 10.5 0.0 4.6 5 1 1 6 6 6 0 Transmembrane domain of unknown function (DUF3566) T2SSE PF00437.20 gi|261402629|ref|YP_003246853.1| - 3e-45 154.4 0.0 7.7e-45 153.1 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|261402629|ref|YP_003246853.1| - 0.034 14.7 0.0 0.81 10.2 0.0 2.7 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|261402629|ref|YP_003246853.1| - 0.069 12.7 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|261402629|ref|YP_003246853.1| - 0.071 13.5 0.0 0.3 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|261402629|ref|YP_003246853.1| - 0.094 13.0 0.0 1.4 9.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|261402629|ref|YP_003246853.1| - 0.17 11.7 0.0 0.41 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain FidL_like PF15941.5 gi|261402630|ref|YP_003246854.1| - 0.081 13.4 1.1 0.95 10.0 0.2 2.3 1 1 1 2 2 2 0 FidL-like putative membrane protein MNSV_P7B PF06692.11 gi|261402630|ref|YP_003246854.1| - 0.24 11.4 3.1 0.52 10.3 0.4 2.3 2 1 0 2 2 2 0 Melon necrotic spot virus P7B protein pXO2-34 PF17362.2 gi|261402634|ref|YP_003246858.1| - 0.1 12.5 2.1 6.3 6.8 0.1 2.9 2 0 0 2 2 2 0 Family of unknown function MG2 PF01835.19 gi|261402634|ref|YP_003246858.1| - 0.17 12.4 0.0 1.4 9.5 0.0 2.5 2 0 0 2 2 2 0 MG2 domain Fumerase PF05681.14 gi|261402635|ref|YP_003246859.1| - 7.7e-102 340.3 0.7 8.8e-102 340.1 0.7 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) AAA PF00004.29 gi|261402636|ref|YP_003246860.1| - 1.4e-44 151.7 0.0 3.7e-44 150.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|261402636|ref|YP_003246860.1| - 3.6e-18 65.1 0.4 3.6e-18 65.1 0.4 2.2 2 0 0 2 2 2 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|261402636|ref|YP_003246860.1| - 1.7e-10 40.7 0.4 6.4e-10 38.8 0.4 2.0 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|261402636|ref|YP_003246860.1| - 1.9e-07 31.4 0.0 1.9e-07 31.4 0.0 2.5 3 1 1 4 4 3 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|261402636|ref|YP_003246860.1| - 9e-07 28.8 0.0 2.7e-06 27.2 0.0 1.8 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|261402636|ref|YP_003246860.1| - 4.9e-06 26.6 0.1 3.6e-05 23.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|261402636|ref|YP_003246860.1| - 6.2e-06 26.7 0.4 0.00083 19.8 0.1 2.5 1 1 1 2 2 2 1 AAA ATPase domain Prot_ATP_OB_N PF17758.1 gi|261402636|ref|YP_003246860.1| - 3.2e-05 23.5 0.1 9e-05 22.0 0.1 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain DUF815 PF05673.13 gi|261402636|ref|YP_003246860.1| - 6.5e-05 22.2 0.0 0.00018 20.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|261402636|ref|YP_003246860.1| - 0.00014 22.2 0.4 0.0078 16.5 0.1 2.6 1 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|261402636|ref|YP_003246860.1| - 0.0011 19.3 0.0 0.0055 17.1 0.0 2.2 3 0 0 3 3 1 1 RNA helicase AAA_24 PF13479.6 gi|261402636|ref|YP_003246860.1| - 0.0012 18.6 0.3 0.0092 15.7 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|261402636|ref|YP_003246860.1| - 0.0015 19.1 0.1 0.0092 16.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|261402636|ref|YP_003246860.1| - 0.0022 17.3 0.1 0.0022 17.3 0.1 2.0 2 0 0 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|261402636|ref|YP_003246860.1| - 0.0022 17.7 0.0 0.0051 16.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|261402636|ref|YP_003246860.1| - 0.0025 17.7 0.1 0.0076 16.1 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|261402636|ref|YP_003246860.1| - 0.0044 17.0 1.7 0.012 15.6 0.0 2.5 2 1 1 3 3 3 1 AAA domain Mg_chelatase PF01078.21 gi|261402636|ref|YP_003246860.1| - 0.0058 16.0 0.1 0.015 14.7 0.1 1.6 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|261402636|ref|YP_003246860.1| - 0.0074 16.5 1.0 0.012 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|261402636|ref|YP_003246860.1| - 0.0079 16.4 0.0 0.018 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|261402636|ref|YP_003246860.1| - 0.033 13.9 0.1 0.27 10.9 0.1 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|261402636|ref|YP_003246860.1| - 0.034 13.4 0.0 0.074 12.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Bac_DnaA PF00308.18 gi|261402636|ref|YP_003246860.1| - 0.036 13.9 0.7 0.55 10.0 0.1 2.9 1 1 1 2 2 2 0 Bacterial dnaA protein TsaE PF02367.17 gi|261402636|ref|YP_003246860.1| - 0.044 13.8 0.7 0.094 12.7 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|261402636|ref|YP_003246860.1| - 0.076 12.5 0.0 0.22 11.0 0.0 1.7 2 0 0 2 2 1 0 P-loop containing dynein motor region PhoH PF02562.16 gi|261402636|ref|YP_003246860.1| - 0.09 12.2 0.8 0.19 11.2 0.1 1.8 2 0 0 2 2 2 0 PhoH-like protein ATPase PF06745.13 gi|261402636|ref|YP_003246860.1| - 0.1 12.0 6.2 0.071 12.4 0.7 2.8 2 1 0 2 2 2 0 KaiC AAA_17 PF13207.6 gi|261402636|ref|YP_003246860.1| - 0.11 13.0 0.1 0.11 13.0 0.1 3.1 2 2 1 3 3 2 0 AAA domain Parvo_NS1 PF01057.17 gi|261402636|ref|YP_003246860.1| - 0.12 11.5 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|261402636|ref|YP_003246860.1| - 0.12 12.0 0.1 0.42 10.1 0.1 1.9 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|261402636|ref|YP_003246860.1| - 0.13 12.0 0.3 0.47 10.1 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|261402636|ref|YP_003246860.1| - 1 9.1 6.5 1.2 8.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|261402637|ref|YP_003246861.1| - 7.3e-78 260.7 1.2 7.3e-78 260.7 1.2 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|261402637|ref|YP_003246861.1| - 5.1e-31 107.2 8.4 1.2e-30 106.0 2.6 3.3 3 0 0 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|261402637|ref|YP_003246861.1| - 2.5e-17 62.9 9.8 5.5e-17 61.8 6.3 3.4 3 1 1 4 4 2 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|261402637|ref|YP_003246861.1| - 4.1e-07 30.4 0.2 1.5e-06 28.5 0.1 2.2 2 0 0 2 2 1 1 AAA domain CbiA PF01656.23 gi|261402637|ref|YP_003246861.1| - 5.1e-07 29.8 0.0 2.2e-06 27.7 0.0 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|261402637|ref|YP_003246861.1| - 6.3e-07 29.1 1.1 2.6e-06 27.1 1.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 gi|261402637|ref|YP_003246861.1| - 4.3e-06 27.2 0.6 4.3e-06 27.2 0.6 3.6 4 1 0 4 4 3 1 AAA domain AAA_30 PF13604.6 gi|261402637|ref|YP_003246861.1| - 4.2e-05 23.3 0.7 0.00016 21.4 0.2 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|261402637|ref|YP_003246861.1| - 7e-05 22.2 0.1 0.00017 20.9 0.1 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_19 PF13245.6 gi|261402637|ref|YP_003246861.1| - 0.00046 20.5 0.2 0.0012 19.2 0.2 1.7 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|261402637|ref|YP_003246861.1| - 0.00055 19.8 0.5 0.077 12.8 0.1 2.9 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_33 PF13671.6 gi|261402637|ref|YP_003246861.1| - 0.00058 20.0 0.0 0.001 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|261402637|ref|YP_003246861.1| - 0.00072 19.6 1.5 0.0029 17.6 1.5 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit 6PF2K PF01591.18 gi|261402637|ref|YP_003246861.1| - 0.00076 18.8 0.2 0.0021 17.4 0.0 1.9 2 0 0 2 2 1 1 6-phosphofructo-2-kinase AAA_16 PF13191.6 gi|261402637|ref|YP_003246861.1| - 0.00089 19.7 0.1 0.0028 18.1 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|261402637|ref|YP_003246861.1| - 0.0015 18.3 0.1 0.0045 16.7 0.1 1.9 1 0 0 1 1 1 1 AAA domain MT0933_antitox PF14013.6 gi|261402637|ref|YP_003246861.1| - 0.0015 18.8 1.0 0.01 16.1 0.1 2.7 2 0 0 2 2 2 1 MT0933-like antitoxin protein APS_kinase PF01583.20 gi|261402637|ref|YP_003246861.1| - 0.0021 17.9 0.1 0.0079 16.1 0.0 1.9 2 0 0 2 2 2 1 Adenylylsulphate kinase G-alpha PF00503.20 gi|261402637|ref|YP_003246861.1| - 0.0023 17.2 0.0 0.0047 16.1 0.0 1.6 1 1 0 1 1 1 1 G-protein alpha subunit MMR_HSR1 PF01926.23 gi|261402637|ref|YP_003246861.1| - 0.0023 18.0 3.6 0.0026 17.8 0.9 2.4 2 1 0 2 2 1 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|261402637|ref|YP_003246861.1| - 0.0027 18.2 0.0 0.011 16.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|261402637|ref|YP_003246861.1| - 0.0041 16.4 0.3 0.0041 16.4 0.3 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|261402637|ref|YP_003246861.1| - 0.0076 16.5 0.0 0.019 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|261402637|ref|YP_003246861.1| - 0.0079 15.2 0.4 0.032 13.2 0.0 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB TrwB_AAD_bind PF10412.9 gi|261402637|ref|YP_003246861.1| - 0.012 14.5 0.0 0.026 13.5 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRPRB PF09439.10 gi|261402637|ref|YP_003246861.1| - 0.013 15.0 4.6 0.44 10.0 1.0 2.9 2 1 0 2 2 1 0 Signal recognition particle receptor beta subunit MobB PF03205.14 gi|261402637|ref|YP_003246861.1| - 0.013 15.4 0.0 0.031 14.2 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B LpxK PF02606.14 gi|261402637|ref|YP_003246861.1| - 0.015 14.4 0.1 0.041 13.0 0.0 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase NTPase_1 PF03266.15 gi|261402637|ref|YP_003246861.1| - 0.016 15.2 0.6 0.61 10.0 0.0 2.7 2 0 0 2 2 2 0 NTPase KTI12 PF08433.10 gi|261402637|ref|YP_003246861.1| - 0.016 14.6 0.0 0.038 13.4 0.0 1.7 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TsaE PF02367.17 gi|261402637|ref|YP_003246861.1| - 0.019 15.0 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SWI2_SNF2 PF18766.1 gi|261402637|ref|YP_003246861.1| - 0.019 14.6 2.1 0.025 14.2 0.1 2.0 1 1 1 2 2 2 0 SWI2/SNF2 ATPase AAA_31 PF13614.6 gi|261402637|ref|YP_003246861.1| - 0.021 14.7 1.1 0.063 13.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|261402637|ref|YP_003246861.1| - 0.023 14.6 0.6 0.096 12.6 0.6 2.2 1 1 0 1 1 1 0 NACHT domain ParA PF10609.9 gi|261402637|ref|YP_003246861.1| - 0.035 13.6 0.0 0.092 12.2 0.0 1.7 1 1 1 2 2 1 0 NUBPL iron-transfer P-loop NTPase KduI PF04962.12 gi|261402637|ref|YP_003246861.1| - 0.041 13.2 0.0 0.077 12.3 0.0 1.4 1 0 0 1 1 1 0 KduI/IolB family AAA_14 PF13173.6 gi|261402637|ref|YP_003246861.1| - 0.042 13.9 0.2 0.14 12.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|261402637|ref|YP_003246861.1| - 0.042 13.8 0.1 0.12 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|261402637|ref|YP_003246861.1| - 0.043 13.6 0.4 0.18 11.6 0.0 2.4 3 1 0 3 3 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|261402637|ref|YP_003246861.1| - 0.051 14.0 0.1 0.48 10.8 0.1 2.3 1 1 0 1 1 1 0 RNA helicase DUF1611 PF07755.11 gi|261402637|ref|YP_003246861.1| - 0.055 12.7 0.0 0.16 11.2 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF1611_C) P-loop domain Thymidylate_kin PF02223.17 gi|261402637|ref|YP_003246861.1| - 0.056 13.1 0.0 0.056 13.1 0.0 2.7 3 0 0 3 3 3 0 Thymidylate kinase PBECR2 PF18810.1 gi|261402637|ref|YP_003246861.1| - 0.061 13.6 0.2 3 8.2 0.0 2.7 2 0 0 2 2 2 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2 AAA_25 PF13481.6 gi|261402637|ref|YP_003246861.1| - 0.08 12.5 0.5 0.85 9.2 0.1 2.3 1 1 1 2 2 2 0 AAA domain AAA_8 PF12780.7 gi|261402637|ref|YP_003246861.1| - 0.092 12.1 0.1 0.26 10.6 0.0 1.8 2 0 0 2 2 1 0 P-loop containing dynein motor region D4 IstB_IS21 PF01695.17 gi|261402637|ref|YP_003246861.1| - 0.094 12.4 0.7 6.9 6.4 0.0 2.9 4 0 0 4 4 2 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|261402637|ref|YP_003246861.1| - 0.11 12.0 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region PPV_E1_C PF00519.17 gi|261402637|ref|YP_003246861.1| - 0.2 10.5 0.1 0.3 9.9 0.1 1.2 1 0 0 1 1 1 0 Papillomavirus helicase AAA PF00004.29 gi|261402637|ref|YP_003246861.1| - 0.72 10.3 8.6 0.068 13.6 0.6 3.4 3 3 1 4 4 2 0 ATPase family associated with various cellular activities (AAA) Flavoprotein PF02441.19 gi|261402638|ref|YP_003246862.1| - 2.4e-30 105.4 0.1 3.2e-30 104.9 0.1 1.2 1 0 0 1 1 1 1 Flavoprotein MNHE PF01899.16 gi|261402639|ref|YP_003246863.1| - 2.6e-15 56.5 0.1 2.6e-15 56.4 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Prefoldin PF02996.17 gi|261402640|ref|YP_003246864.1| - 4.1e-20 71.9 9.2 5.6e-20 71.4 9.2 1.3 1 0 0 1 1 1 1 Prefoldin subunit DUF848 PF05852.11 gi|261402640|ref|YP_003246864.1| - 0.0012 18.9 7.6 0.0012 18.9 7.6 2.0 2 0 0 2 2 2 1 Gammaherpesvirus protein of unknown function (DUF848) Prefoldin_2 PF01920.20 gi|261402640|ref|YP_003246864.1| - 0.0026 17.7 17.6 0.065 13.2 0.3 2.7 1 1 2 3 3 3 2 Prefoldin subunit Hormone_1 PF00103.20 gi|261402640|ref|YP_003246864.1| - 0.0053 16.5 8.8 0.0095 15.7 2.5 2.0 2 0 0 2 2 2 1 Somatotropin hormone family IL11 PF07400.11 gi|261402640|ref|YP_003246864.1| - 0.059 13.0 0.3 0.059 13.0 0.3 1.6 2 0 0 2 2 2 0 Interleukin 11 Amidohydro_1 PF01979.20 gi|261402640|ref|YP_003246864.1| - 0.1 11.9 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family FlxA PF14282.6 gi|261402640|ref|YP_003246864.1| - 0.19 11.7 20.5 0.18 11.8 10.9 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF1840 PF08895.11 gi|261402640|ref|YP_003246864.1| - 0.25 11.7 6.7 0.042 14.2 2.7 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) DUF4175 PF13779.6 gi|261402640|ref|YP_003246864.1| - 0.27 9.1 7.2 0.34 8.8 7.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) APG6_N PF17675.1 gi|261402640|ref|YP_003246864.1| - 0.37 11.3 17.4 1.3 9.5 17.4 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF1993 PF09351.10 gi|261402640|ref|YP_003246864.1| - 0.5 10.5 3.2 0.62 10.2 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1993) BST2 PF16716.5 gi|261402640|ref|YP_003246864.1| - 1.5 9.4 12.1 0.066 13.8 4.1 2.3 2 1 0 2 2 2 0 Bone marrow stromal antigen 2 YabA PF06156.13 gi|261402640|ref|YP_003246864.1| - 4.7 7.9 15.8 2.9 8.6 8.1 2.1 2 0 0 2 2 2 0 Initiation control protein YabA CheR PF01739.18 gi|261402641|ref|YP_003246865.1| - 1.6e-57 194.2 0.1 2.4e-57 193.6 0.1 1.3 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|261402641|ref|YP_003246865.1| - 3.8e-15 55.3 0.9 1e-14 54.0 0.9 1.7 1 0 0 1 1 1 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|261402641|ref|YP_003246865.1| - 4e-06 27.5 0.1 2.2e-05 25.1 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261402641|ref|YP_003246865.1| - 0.00019 22.1 0.0 0.064 14.0 0.0 2.5 1 1 1 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.12 gi|261402641|ref|YP_003246865.1| - 0.004 17.8 0.2 0.06 14.0 0.1 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261402641|ref|YP_003246865.1| - 0.0056 16.5 0.0 0.008 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HMGL-like PF00682.19 gi|261402642|ref|YP_003246866.1| - 1e-82 277.6 0.3 1.7e-82 277.0 0.3 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|261402642|ref|YP_003246866.1| - 5.6e-32 110.4 1.8 1.2e-31 109.4 1.8 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain ArsA_ATPase PF02374.15 gi|261402643|ref|YP_003246867.1| - 1.7e-124 415.0 1.3 2e-124 414.7 1.3 1.1 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|261402643|ref|YP_003246867.1| - 1.8e-11 44.2 0.0 1.5e-10 41.2 0.0 2.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|261402643|ref|YP_003246867.1| - 1.5e-10 41.3 0.0 3.3e-10 40.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|261402643|ref|YP_003246867.1| - 6.9e-09 35.5 5.0 0.00019 20.9 3.1 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|261402643|ref|YP_003246867.1| - 1.7e-06 27.7 0.0 7.3e-06 25.6 0.0 1.9 1 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|261402643|ref|YP_003246867.1| - 8.1e-06 25.6 2.9 0.00068 19.3 0.7 2.8 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|261402643|ref|YP_003246867.1| - 0.00044 19.3 0.4 0.0015 17.6 0.2 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|261402643|ref|YP_003246867.1| - 0.00047 19.7 0.1 0.0011 18.5 0.1 1.6 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CTP_synth_N PF06418.14 gi|261402643|ref|YP_003246867.1| - 0.005 16.2 0.8 0.33 10.2 0.4 2.2 2 0 0 2 2 2 1 CTP synthase N-terminus NB-ARC PF00931.22 gi|261402643|ref|YP_003246867.1| - 0.022 13.9 0.1 0.057 12.6 0.1 1.8 1 0 0 1 1 1 0 NB-ARC domain ATP_bind_1 PF03029.17 gi|261402643|ref|YP_003246867.1| - 0.031 14.1 0.4 0.08 12.7 0.1 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF815 PF05673.13 gi|261402643|ref|YP_003246867.1| - 0.039 13.1 0.5 0.078 12.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|261402643|ref|YP_003246867.1| - 0.13 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ResIII PF04851.15 gi|261402643|ref|YP_003246867.1| - 0.17 11.9 4.0 0.059 13.4 0.5 2.1 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_26 PF13500.6 gi|261402643|ref|YP_003246867.1| - 0.2 11.5 1.1 0.9 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF116 PF01976.17 gi|261402644|ref|YP_003246868.1| - 1.4e-46 157.8 0.0 1.8e-46 157.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF116 CbiX PF01903.17 gi|261402645|ref|YP_003246869.1| - 2.4e-36 124.3 1.2 3.1e-36 124.0 1.2 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|261402645|ref|YP_003246869.1| - 1.2e-06 28.0 0.1 1.2e-06 28.0 0.1 1.2 1 1 0 1 1 1 1 Cobalt chelatase (CbiK) NTPase_1 PF03266.15 gi|261402645|ref|YP_003246869.1| - 0.00011 22.2 0.1 0.00014 21.8 0.1 1.2 1 0 0 1 1 1 1 NTPase Ferrochelatase PF00762.19 gi|261402645|ref|YP_003246869.1| - 0.0012 18.0 0.0 0.0016 17.6 0.0 1.3 1 1 0 1 1 1 1 Ferrochelatase SelP_N PF04592.14 gi|261402645|ref|YP_003246869.1| - 2.1 7.7 9.7 2.8 7.3 9.7 1.2 1 0 0 1 1 1 0 Selenoprotein P, N terminal region DUF643 PF04867.12 gi|261402646|ref|YP_003246870.1| - 0.012 16.2 3.9 0.016 15.8 3.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF643) SieB PF14163.6 gi|261402646|ref|YP_003246870.1| - 0.16 11.4 3.8 2.9 7.4 3.8 2.0 1 1 0 1 1 1 0 Super-infection exclusion protein B UPF0154 PF03672.13 gi|261402646|ref|YP_003246870.1| - 7.6 6.7 6.3 32 4.6 4.4 2.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0154) QRPTase_C PF01729.19 gi|261402647|ref|YP_003246871.1| - 3e-63 212.6 0.9 3.8e-63 212.3 0.9 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|261402647|ref|YP_003246871.1| - 9.7e-24 83.2 0.0 1.8e-23 82.4 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain IMPDH PF00478.25 gi|261402647|ref|YP_003246871.1| - 0.01 14.9 0.4 0.013 14.5 0.4 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain B12-binding PF02310.19 gi|261402647|ref|YP_003246871.1| - 0.022 14.8 0.2 0.13 12.3 0.0 2.2 1 1 0 2 2 2 0 B12 binding domain TMP-TENI PF02581.17 gi|261402647|ref|YP_003246871.1| - 0.052 12.9 0.0 0.093 12.0 0.0 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase RNase_P_Rpp14 PF01900.19 gi|261402648|ref|YP_003246872.1| - 2.2e-22 79.2 0.0 2.6e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family GTP_EFTU PF00009.27 gi|261402649|ref|YP_003246873.1| - 6.8e-36 123.6 1.2 1.1e-35 122.9 1.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|261402649|ref|YP_003246873.1| - 7.3e-12 45.5 0.4 7.3e-12 45.5 0.4 3.0 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|261402649|ref|YP_003246873.1| - 8.6e-09 35.5 1.0 1.3e-08 34.9 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261402649|ref|YP_003246873.1| - 1.9e-07 30.8 1.0 8.7e-07 28.6 1.0 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B MeaB PF03308.16 gi|261402649|ref|YP_003246873.1| - 2.5e-07 29.9 0.4 9.7e-07 28.0 0.3 1.9 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|261402649|ref|YP_003246873.1| - 5.1e-06 26.5 0.7 1.1e-05 25.5 0.5 1.6 1 1 0 1 1 1 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|261402649|ref|YP_003246873.1| - 2.5e-05 24.2 0.4 7.9e-05 22.6 0.4 1.8 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|261402649|ref|YP_003246873.1| - 0.00091 19.0 0.7 0.013 15.2 0.7 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|261402649|ref|YP_003246873.1| - 0.0014 18.2 0.0 0.0038 16.8 0.0 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MnmE_helical PF12631.7 gi|261402649|ref|YP_003246873.1| - 0.0016 18.7 0.1 0.0025 18.0 0.1 1.3 1 0 0 1 1 1 1 MnmE helical domain SRPRB PF09439.10 gi|261402649|ref|YP_003246873.1| - 0.007 15.8 1.2 0.031 13.7 1.2 2.0 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Arf PF00025.21 gi|261402649|ref|YP_003246873.1| - 0.013 14.9 0.1 0.025 14.0 0.1 1.5 1 0 0 1 1 1 0 ADP-ribosylation factor family ATP_bind_1 PF03029.17 gi|261402649|ref|YP_003246873.1| - 0.017 14.9 0.2 0.049 13.4 0.2 1.8 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Hjc PF01870.18 gi|261402651|ref|YP_003246875.1| - 2e-29 101.4 0.0 3e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Mrr_cat PF04471.12 gi|261402651|ref|YP_003246875.1| - 4.6e-06 26.6 0.1 6.6e-06 26.1 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease HicA_toxin PF07927.12 gi|261402651|ref|YP_003246875.1| - 0.029 14.4 0.1 0.071 13.2 0.1 1.6 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, DUF2102 PF09875.9 gi|261402652|ref|YP_003246876.1| - 5.8e-38 128.7 0.0 8.6e-38 128.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2102) BLUF PF04940.12 gi|261402652|ref|YP_003246876.1| - 0.097 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Sensors of blue-light using FAD CBS PF00571.28 gi|261402653|ref|YP_003246877.1| - 6.6e-34 116.1 7.7 3.8e-18 65.7 0.5 2.1 2 0 0 2 2 2 2 CBS domain CAAD PF14159.6 gi|261402653|ref|YP_003246877.1| - 0.0041 16.9 0.1 5.8 6.8 0.0 2.7 2 1 1 3 3 3 2 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Succ_DH_flav_C PF02910.20 gi|261402653|ref|YP_003246877.1| - 0.079 13.0 1.3 0.88 9.6 0.3 2.0 2 0 0 2 2 2 0 Fumarate reductase flavoprotein C-term Thioredoxin_3 PF13192.6 gi|261402653|ref|YP_003246877.1| - 0.43 10.7 4.6 0.41 10.7 0.5 2.3 2 1 0 2 2 2 0 Thioredoxin domain Intein_splicing PF14890.6 gi|261402653|ref|YP_003246877.1| - 0.76 9.7 5.0 0.96 9.4 5.0 1.1 1 0 0 1 1 1 0 Intein splicing domain PRC PF05239.16 gi|261402653|ref|YP_003246877.1| - 1.3 9.2 8.3 11 6.2 0.2 3.3 2 1 1 3 3 3 0 PRC-barrel domain Prefoldin PF02996.17 gi|261402654|ref|YP_003246878.1| - 1.2e-27 96.2 5.5 1.4e-27 95.9 5.5 1.1 1 0 0 1 1 1 1 Prefoldin subunit DUF4407 PF14362.6 gi|261402654|ref|YP_003246878.1| - 0.0094 15.3 1.3 0.013 14.9 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|261402654|ref|YP_003246878.1| - 0.025 14.8 1.4 4.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Fibin PF15819.5 gi|261402654|ref|YP_003246878.1| - 0.029 14.2 1.6 0.045 13.5 1.6 1.3 1 0 0 1 1 1 0 Fin bud initiation factor homologue YabA PF06156.13 gi|261402654|ref|YP_003246878.1| - 0.11 13.1 7.2 6 7.6 2.0 3.0 1 1 1 3 3 3 0 Initiation control protein YabA DivIC PF04977.15 gi|261402654|ref|YP_003246878.1| - 0.16 11.7 7.4 0.9 9.4 0.0 2.8 2 1 0 2 2 2 0 Septum formation initiator APG6_N PF17675.1 gi|261402654|ref|YP_003246878.1| - 0.2 12.2 12.4 6.6 7.3 0.0 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region SlyX PF04102.12 gi|261402654|ref|YP_003246878.1| - 0.24 12.0 10.4 22 5.7 0.0 3.1 2 1 0 3 3 3 0 SlyX DUF2076 PF09849.9 gi|261402654|ref|YP_003246878.1| - 0.77 9.7 3.3 0.66 10.0 1.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2076) ZapB PF06005.12 gi|261402654|ref|YP_003246878.1| - 1.1 9.8 11.4 2.7 8.5 0.2 2.5 1 1 1 2 2 2 0 Cell division protein ZapB MerR-DNA-bind PF09278.11 gi|261402654|ref|YP_003246878.1| - 1.1 9.9 5.9 8.2 7.0 0.3 2.8 2 2 0 2 2 2 0 MerR, DNA binding Spc24 PF08286.11 gi|261402654|ref|YP_003246878.1| - 2 8.7 7.2 28 5.0 0.0 2.4 1 1 0 2 2 2 0 Spc24 subunit of Ndc80 Prefoldin_2 PF01920.20 gi|261402655|ref|YP_003246879.1| - 0.0017 18.3 0.0 0.002 18.0 0.0 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.17 gi|261402655|ref|YP_003246879.1| - 0.0031 17.4 0.1 0.006 16.5 0.1 1.5 1 1 1 2 2 2 1 Prefoldin subunit DUF2115 PF09888.9 gi|261402656|ref|YP_003246880.1| - 7e-50 169.8 10.7 7.9e-50 169.6 10.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2115) rRNA_proc-arch PF13234.6 gi|261402656|ref|YP_003246880.1| - 0.0073 16.3 3.1 0.011 15.6 3.1 1.3 1 0 0 1 1 1 1 rRNA-processing arch domain VIT1 PF01988.19 gi|261402657|ref|YP_003246881.1| - 6.1e-17 62.2 18.7 8.3e-11 42.2 6.0 2.0 1 1 1 2 2 2 2 VIT family DUF3810 PF12725.7 gi|261402657|ref|YP_003246881.1| - 3.2 7.0 5.9 3.7 6.8 5.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) RraA-like PF03737.15 gi|261402658|ref|YP_003246882.1| - 3.6e-35 121.3 0.1 4.5e-35 121.0 0.1 1.1 1 0 0 1 1 1 1 Aldolase/RraA ALAD PF00490.21 gi|261402659|ref|YP_003246883.1| - 5.8e-150 498.8 0.1 6.5e-150 498.6 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Peripla_BP_2 PF01497.18 gi|261402660|ref|YP_003246884.1| - 9.7e-18 64.6 0.0 1.8e-17 63.7 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein PGK PF00162.19 gi|261402661|ref|YP_003246885.1| - 2e-120 402.2 2.5 2.3e-120 402.0 2.5 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Yqai PF09466.10 gi|261402661|ref|YP_003246885.1| - 0.1 12.9 2.6 1.7 9.0 0.1 2.7 2 0 0 2 2 2 0 Hypothetical protein Yqai AIRS PF00586.24 gi|261402662|ref|YP_003246886.1| - 1e-15 58.2 0.8 2.5e-15 56.9 0.6 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|261402662|ref|YP_003246886.1| - 1.3e-11 44.9 0.0 2.1e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain SMC_N PF02463.19 gi|261402663|ref|YP_003246887.1| - 2.9e-51 174.0 84.8 8.1e-36 123.5 1.5 3.7 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|261402663|ref|YP_003246887.1| - 9.7e-32 109.7 0.1 4.6e-31 107.6 0.1 2.3 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|261402663|ref|YP_003246887.1| - 2e-13 50.8 37.8 2e-13 50.8 37.8 5.0 2 2 3 5 5 5 2 AAA ATPase domain AAA_29 PF13555.6 gi|261402663|ref|YP_003246887.1| - 5.4e-10 38.9 0.0 1.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|261402663|ref|YP_003246887.1| - 9.3e-10 38.8 57.6 2e-06 27.9 18.4 5.3 2 2 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|261402663|ref|YP_003246887.1| - 2.8e-05 24.7 61.7 2.8e-05 24.7 61.7 7.9 2 2 3 5 5 5 2 AAA domain TMF_DNA_bd PF12329.8 gi|261402663|ref|YP_003246887.1| - 0.00073 19.5 17.9 0.00073 19.5 17.9 14.5 3 2 8 12 12 12 3 TATA element modulatory factor 1 DNA binding AAA_27 PF13514.6 gi|261402663|ref|YP_003246887.1| - 0.0023 17.5 0.0 0.0023 17.5 0.0 4.6 5 1 0 5 5 5 1 AAA domain ABC_tran PF00005.27 gi|261402663|ref|YP_003246887.1| - 0.0097 16.4 1.7 0.0097 16.4 1.7 6.8 2 2 1 3 3 3 1 ABC transporter AAA_22 PF13401.6 gi|261402663|ref|YP_003246887.1| - 3.7 7.8 6.9 7.1 6.9 0.0 4.5 4 0 0 4 4 4 0 AAA domain CbiA PF01656.23 gi|261402664|ref|YP_003246888.1| - 2.7e-13 50.1 0.0 1.1e-12 48.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|261402664|ref|YP_003246888.1| - 3.2e-08 33.3 0.3 2.9e-07 30.2 0.1 2.3 2 1 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|261402664|ref|YP_003246888.1| - 2.5e-07 30.4 1.4 8.8e-06 25.4 0.1 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|261402664|ref|YP_003246888.1| - 4.9e-07 29.8 0.2 5e-06 26.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|261402664|ref|YP_003246888.1| - 2.6e-05 23.8 0.0 0.00094 18.7 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|261402664|ref|YP_003246888.1| - 6e-05 23.0 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase ArsA_ATPase PF02374.15 gi|261402664|ref|YP_003246888.1| - 8.1e-05 21.9 0.1 0.0002 20.7 0.1 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|261402664|ref|YP_003246888.1| - 0.0019 17.6 0.0 0.0079 15.5 0.0 1.8 2 0 0 2 2 2 1 ATPase MipZ DUF87 PF01935.17 gi|261402664|ref|YP_003246888.1| - 0.0021 18.2 3.8 0.0036 17.4 0.1 2.6 2 2 0 3 3 3 1 Helicase HerA, central domain AAA_24 PF13479.6 gi|261402664|ref|YP_003246888.1| - 0.0055 16.4 0.0 0.016 14.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|261402664|ref|YP_003246888.1| - 0.0078 15.5 0.0 0.018 14.3 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin PRK PF00485.18 gi|261402664|ref|YP_003246888.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 gi|261402664|ref|YP_003246888.1| - 0.012 16.1 1.5 0.031 14.8 1.6 2.0 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|261402664|ref|YP_003246888.1| - 0.015 15.7 0.0 0.12 12.8 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain MeaB PF03308.16 gi|261402664|ref|YP_003246888.1| - 0.019 14.0 0.0 0.034 13.1 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_15 PF13175.6 gi|261402664|ref|YP_003246888.1| - 0.021 14.6 0.3 0.15 11.7 0.4 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|261402664|ref|YP_003246888.1| - 0.022 15.3 0.3 0.057 14.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|261402664|ref|YP_003246888.1| - 0.022 14.5 0.1 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop LpxK PF02606.14 gi|261402664|ref|YP_003246888.1| - 0.038 13.1 0.0 0.86 8.6 0.0 2.1 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase TrkA_N PF02254.18 gi|261402664|ref|YP_003246888.1| - 0.051 13.8 0.6 2.3 8.5 0.0 2.7 2 1 0 2 2 2 0 TrkA-N domain MobB PF03205.14 gi|261402664|ref|YP_003246888.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.10 gi|261402664|ref|YP_003246888.1| - 0.078 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.23 gi|261402664|ref|YP_003246888.1| - 0.091 12.8 0.4 14 5.8 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|261402664|ref|YP_003246888.1| - 0.17 12.3 0.1 0.41 11.1 0.1 1.6 1 0 0 1 1 1 0 RNA helicase GTP_EFTU PF00009.27 gi|261402664|ref|YP_003246888.1| - 0.43 10.1 2.3 5.2 6.5 0.7 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain HTH_3 PF01381.22 gi|261402665|ref|YP_003246889.1| - 1.7e-10 40.8 0.6 5.2e-10 39.2 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix HTH_19 PF12844.7 gi|261402665|ref|YP_003246889.1| - 5.1e-05 23.2 0.3 0.00032 20.7 0.0 2.3 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|261402665|ref|YP_003246889.1| - 0.017 15.4 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_MocR PF12897.7 gi|261402665|ref|YP_003246889.1| - 0.017 13.9 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase NusA_N PF08529.11 gi|261402665|ref|YP_003246889.1| - 0.095 13.1 0.3 0.15 12.4 0.3 1.4 1 0 0 1 1 1 0 NusA N-terminal domain ACP_syn_III_C PF08541.10 gi|261402666|ref|YP_003246890.1| - 5.6e-12 45.7 0.0 2e-11 43.9 0.0 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|261402666|ref|YP_003246890.1| - 1.8e-05 24.5 0.1 0.0002 21.1 0.1 2.0 1 1 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Thiolase_N PF00108.23 gi|261402666|ref|YP_003246890.1| - 6.2e-05 22.5 0.1 0.0001 21.8 0.1 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|261402666|ref|YP_003246890.1| - 0.00018 21.5 0.1 0.00024 21.0 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|261402666|ref|YP_003246890.1| - 0.001 18.9 0.9 0.0027 17.5 0.9 1.7 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Phosphatase PF15698.5 gi|261402666|ref|YP_003246890.1| - 0.086 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphatase Thiolase_N PF00108.23 gi|261402667|ref|YP_003246891.1| - 7.9e-29 100.8 0.2 1.6e-28 99.8 0.2 1.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|261402667|ref|YP_003246891.1| - 3.2e-11 42.9 0.2 2.8e-10 39.9 0.1 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|261402667|ref|YP_003246891.1| - 2.6e-08 33.8 4.3 4.8e-07 29.6 2.7 2.5 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|261402667|ref|YP_003246891.1| - 1.8e-05 24.5 0.7 0.0013 18.6 0.4 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|261402667|ref|YP_003246891.1| - 0.0052 16.8 0.3 0.77 9.8 0.1 2.9 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain Popeye PF04831.13 gi|261402668|ref|YP_003246892.1| - 0.18 12.0 4.9 0.21 11.7 4.9 1.1 1 0 0 1 1 1 0 Popeye protein conserved region DUF2207 PF09972.9 gi|261402668|ref|YP_003246892.1| - 4.2 6.0 6.3 5 5.8 6.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) CooT PF10133.9 gi|261402670|ref|YP_003246894.1| - 3.2e-14 52.9 5.7 3.4e-14 52.8 5.7 1.0 1 0 0 1 1 1 1 CO dehydrogenase accessory protein CooT KOW PF00467.29 gi|261402670|ref|YP_003246894.1| - 0.44 10.6 3.2 1.1 9.3 0.1 2.0 2 0 0 2 2 2 0 KOW motif OB_aCoA_assoc PF01796.17 gi|261402671|ref|YP_003246895.1| - 7.7e-25 86.7 0.2 1.1e-24 86.2 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|261402671|ref|YP_003246895.1| - 1e-11 44.4 0.5 1.5e-11 43.9 0.5 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|261402671|ref|YP_003246895.1| - 0.00085 19.2 1.4 0.53 10.3 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|261402671|ref|YP_003246895.1| - 0.017 15.2 0.6 0.03 14.5 0.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|261402671|ref|YP_003246895.1| - 0.029 14.4 0.5 0.046 13.8 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|261402671|ref|YP_003246895.1| - 0.037 13.5 0.9 4.2 7.0 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding TackOD1 PF18551.1 gi|261402671|ref|YP_003246895.1| - 0.068 12.8 0.3 0.098 12.3 0.3 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 HypA PF01155.19 gi|261402671|ref|YP_003246895.1| - 0.092 12.8 0.3 0.15 12.1 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_3 PF13878.6 gi|261402671|ref|YP_003246895.1| - 0.26 11.2 0.1 0.26 11.2 0.1 2.0 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.6 gi|261402671|ref|YP_003246895.1| - 1.1 8.7 4.7 2.9 7.4 4.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|261402671|ref|YP_003246895.1| - 4.9 7.0 7.0 23 4.9 7.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S3Ae PF01015.18 gi|261402672|ref|YP_003246896.1| - 2.6e-61 206.7 1.9 3.1e-61 206.5 1.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Tcp11 PF05794.13 gi|261402672|ref|YP_003246896.1| - 0.072 12.2 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 T-complex protein 11 DUF5333 PF17267.2 gi|261402672|ref|YP_003246896.1| - 0.11 12.7 0.8 1.1 9.5 0.0 2.4 1 1 2 3 3 3 0 Family of unknown function (DUF5333) DUF3888 PF13027.6 gi|261402672|ref|YP_003246896.1| - 0.11 12.9 1.3 5.5 7.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3888) TF_Zn_Ribbon PF08271.12 gi|261402673|ref|YP_003246897.1| - 0.0024 17.3 3.7 0.87 9.2 0.4 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding zf-DNL PF05180.12 gi|261402673|ref|YP_003246897.1| - 0.0065 16.4 0.9 0.011 15.7 0.9 1.5 1 0 0 1 1 1 1 DNL zinc finger zf-RING_7 PF02591.15 gi|261402673|ref|YP_003246897.1| - 0.029 14.6 3.2 0.19 11.9 0.0 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ISL3 PF14690.6 gi|261402673|ref|YP_003246897.1| - 0.053 14.2 1.3 2.5 8.9 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|261402673|ref|YP_003246897.1| - 0.072 13.2 2.0 0.17 12.1 2.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF2171 PF09939.9 gi|261402673|ref|YP_003246897.1| - 0.28 11.5 2.2 0.65 10.3 0.1 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2171) HypA PF01155.19 gi|261402673|ref|YP_003246897.1| - 0.66 10.0 5.0 0.3 11.1 1.6 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|261402673|ref|YP_003246897.1| - 0.69 9.7 6.7 1.7 8.5 0.2 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|261402673|ref|YP_003246897.1| - 0.75 9.8 0.1 0.75 9.8 0.1 3.2 4 0 0 4 4 4 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|261402673|ref|YP_003246897.1| - 1.8 8.5 5.5 0.91 9.5 1.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Sgf11 PF08209.11 gi|261402673|ref|YP_003246897.1| - 2.4 7.8 6.8 0.97 9.1 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RRN7 PF11781.8 gi|261402673|ref|YP_003246897.1| - 5.5 6.8 9.8 5.6 6.7 1.9 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|261402673|ref|YP_003246897.1| - 5.9 6.9 7.3 6.6 6.8 2.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Ribosomal_S2 PF00318.20 gi|261402674|ref|YP_003246898.1| - 3e-25 88.7 0.0 1.1e-13 51.0 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Ribosomal_L15e PF00827.17 gi|261402675|ref|YP_003246899.1| - 3.5e-90 300.9 5.0 3.9e-90 300.7 5.0 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF2628 PF10947.8 gi|261402677|ref|YP_003246901.1| - 0.034 14.5 0.3 0.062 13.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) Med9 PF07544.13 gi|261402678|ref|YP_003246902.1| - 0.0018 18.3 0.1 0.0034 17.5 0.1 1.5 1 1 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 Linker_histone PF00538.19 gi|261402678|ref|YP_003246902.1| - 0.031 14.6 2.1 0.32 11.4 0.2 2.3 2 0 0 2 2 2 0 linker histone H1 and H5 family Myb_DNA-bind_6 PF13921.6 gi|261402678|ref|YP_003246902.1| - 0.081 13.2 0.8 0.28 11.5 0.7 1.9 1 1 1 2 2 2 0 Myb-like DNA-binding domain DUF2280 PF10045.9 gi|261402678|ref|YP_003246902.1| - 0.12 12.6 0.4 0.18 12.1 0.4 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2280) Phage_holin_6_1 PF09682.10 gi|261402678|ref|YP_003246902.1| - 0.33 11.4 4.2 0.52 10.8 4.2 1.4 1 0 0 1 1 1 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Terminase_6 PF03237.15 gi|261402679|ref|YP_003246903.1| - 1.5e-12 47.6 0.0 2.2e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Terminase-like family Terminase_6C PF17289.2 gi|261402679|ref|YP_003246903.1| - 1.2e-11 44.9 0.0 2.7e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Terminase RNaseH-like domain Terminase_3 PF04466.13 gi|261402679|ref|YP_003246903.1| - 1.9e-06 27.6 0.1 3.9e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Phage terminase large subunit Terminase_1 PF03354.15 gi|261402679|ref|YP_003246903.1| - 6.5e-06 24.9 0.1 0.0001 21.0 0.0 2.0 2 0 0 2 2 2 1 Phage Terminase Helicase_RecD PF05127.14 gi|261402679|ref|YP_003246903.1| - 7.1e-06 26.0 0.0 1.4e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Helicase Terminase_GpA PF05876.12 gi|261402679|ref|YP_003246903.1| - 0.00017 20.3 0.0 0.0003 19.5 0.0 1.3 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) AAA_30 PF13604.6 gi|261402679|ref|YP_003246903.1| - 0.0037 17.0 0.0 0.0054 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Pox_H7 PF04787.12 gi|261402679|ref|YP_003246903.1| - 0.042 14.4 0.1 0.15 12.6 0.1 2.0 1 0 0 1 1 1 0 Late protein H7 DUF2053 PF09767.9 gi|261402679|ref|YP_003246903.1| - 0.094 12.9 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2053) DUF3627 PF12299.8 gi|261402679|ref|YP_003246903.1| - 0.15 12.1 2.1 0.78 9.9 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3627) Phage_Mu_F PF04233.14 gi|261402680|ref|YP_003246904.1| - 8.9e-15 55.4 0.7 8.9e-15 55.4 0.7 2.5 2 1 0 2 2 2 1 Phage Mu protein F like protein PG_binding_4 PF12229.8 gi|261402680|ref|YP_003246904.1| - 0.015 15.6 2.1 0.064 13.5 1.8 2.2 1 1 0 1 1 1 0 Putative peptidoglycan binding domain DUF3243 PF11588.8 gi|261402680|ref|YP_003246904.1| - 0.12 12.7 0.4 0.5 10.7 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) GlutR_dimer PF00745.20 gi|261402680|ref|YP_003246904.1| - 3.7 8.1 10.9 2.3 8.7 1.0 3.6 2 1 1 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain EF-G-binding_N PF07299.11 gi|261402680|ref|YP_003246904.1| - 6.6 7.3 14.8 11 6.6 1.0 4.0 4 0 0 4 4 4 0 Elongation factor G-binding protein, N-terminal HK97-gp10_like PF04883.12 gi|261402681|ref|YP_003246905.1| - 3.9e-06 27.8 1.8 2.8e-05 25.0 0.1 2.4 2 1 0 2 2 2 1 Bacteriophage HK97-gp10, putative tail-component YbaB_DNA_bd PF02575.16 gi|261402681|ref|YP_003246905.1| - 0.0012 19.0 1.2 0.77 10.0 0.6 2.5 3 0 0 3 3 3 2 YbaB/EbfC DNA-binding family Arg_decarbox_C PF17944.1 gi|261402681|ref|YP_003246905.1| - 0.018 15.6 0.1 2 9.0 0.0 2.5 1 1 1 2 2 2 0 Arginine decarboxylase C-terminal helical extension p450 PF00067.22 gi|261402681|ref|YP_003246905.1| - 0.087 11.6 0.1 0.16 10.6 0.0 1.5 2 0 0 2 2 2 0 Cytochrome P450 CarboxypepD_reg PF13620.6 gi|261402682|ref|YP_003246906.1| - 0.00022 21.4 3.3 0.48 10.7 0.2 3.9 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 gi|261402682|ref|YP_003246906.1| - 0.011 16.0 0.3 0.011 16.0 0.3 3.7 4 1 1 5 5 5 0 Invasin, domain 3 Big_1 PF02369.16 gi|261402682|ref|YP_003246906.1| - 0.024 14.6 8.9 0.16 12.0 0.1 5.4 6 0 0 6 6 6 0 Bacterial Ig-like domain (group 1) Y_Y_Y PF07495.13 gi|261402682|ref|YP_003246906.1| - 0.38 10.7 10.1 0.47 10.5 0.9 4.8 6 1 0 6 6 6 0 Y_Y_Y domain DUF2341 PF10102.9 gi|261402684|ref|YP_003246908.1| - 3.5e-05 24.3 0.3 0.004 17.7 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF2341) DUF2341 PF10102.9 gi|261402685|ref|YP_003246909.1| - 2.8e-25 88.7 3.6 4.8e-25 88.0 0.2 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF2341) DUF2460 PF09343.10 gi|261402685|ref|YP_003246909.1| - 3.6e-08 33.2 0.6 1.2e-07 31.5 0.6 1.8 1 1 0 1 1 1 1 Conserved hypothetical protein 2217 (DUF2460) Big_6 PF17936.1 gi|261402685|ref|YP_003246909.1| - 1.8e-05 24.9 0.7 1.8e-05 24.9 0.7 2.9 3 1 0 3 3 3 1 Bacterial Ig domain Phage_T7_tail PF03906.14 gi|261402685|ref|YP_003246909.1| - 2.9e-05 23.8 1.7 6.8e-05 22.6 1.7 1.7 1 0 0 1 1 1 1 Phage T7 tail fibre protein CarboxypepD_reg PF13620.6 gi|261402685|ref|YP_003246909.1| - 0.00045 20.4 0.6 0.00045 20.4 0.6 2.3 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain FlgD_ig PF13860.6 gi|261402685|ref|YP_003246909.1| - 0.057 13.3 0.1 0.31 10.9 0.1 2.3 1 0 0 1 1 1 0 FlgD Ig-like domain bMG3 PF11974.8 gi|261402685|ref|YP_003246909.1| - 0.088 12.8 0.1 0.25 11.4 0.1 1.8 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Sigma70_r4_2 PF08281.12 gi|261402686|ref|YP_003246910.1| - 0.022 14.4 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Baculo_LEF-11 PF06385.12 gi|261402686|ref|YP_003246910.1| - 0.022 15.2 0.8 0.035 14.6 0.3 1.5 2 0 0 2 2 2 0 Baculovirus LEF-11 protein HTH_40 PF14493.6 gi|261402686|ref|YP_003246910.1| - 0.067 13.7 0.2 0.57 10.7 0.0 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain FdhD-NarQ PF02634.15 gi|261402686|ref|YP_003246910.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 FdhD/NarQ family PhageMin_Tail PF10145.9 gi|261402688|ref|YP_003246912.1| - 1.2e-44 152.6 13.9 1.2e-44 152.6 13.9 4.4 2 1 1 4 4 4 1 Phage-related minor tail protein FlaC_arch PF05377.11 gi|261402688|ref|YP_003246912.1| - 0.0062 16.9 3.5 3.7 8.0 0.1 4.6 4 0 0 4 4 4 1 Flagella accessory protein C (FlaC) DUF5344 PF17279.2 gi|261402688|ref|YP_003246912.1| - 0.092 13.3 2.1 0.93 10.1 0.2 3.5 3 0 0 3 3 3 0 Family of unknown function (DUF5344) Peptidase_M41 PF01434.18 gi|261402688|ref|YP_003246912.1| - 0.14 12.0 6.5 0.098 12.5 0.3 3.0 2 1 1 3 3 3 0 Peptidase family M41 TubC_N PF18563.1 gi|261402688|ref|YP_003246912.1| - 0.81 9.7 4.2 7.2 6.7 0.5 3.7 3 0 0 3 3 3 0 TubC N-terminal docking domain GrpE PF01025.19 gi|261402688|ref|YP_003246912.1| - 2.2 7.9 5.1 11 5.7 0.2 3.7 4 1 0 4 4 4 0 GrpE Phasin PF05597.11 gi|261402688|ref|YP_003246912.1| - 2.4 8.2 5.5 29 4.7 0.2 4.2 4 1 1 5 5 5 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF16 PF01519.16 gi|261402688|ref|YP_003246912.1| - 3 8.4 6.3 5.9 7.4 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function DUF16 DASH_Duo1 PF08651.10 gi|261402688|ref|YP_003246912.1| - 4.2 7.2 8.5 1.1 9.1 0.3 4.0 4 0 0 4 4 4 0 DASH complex subunit Duo1 WXG100 PF06013.12 gi|261402688|ref|YP_003246912.1| - 5.2 7.4 7.9 5.6 7.3 0.1 4.4 4 2 0 4 4 4 0 Proteins of 100 residues with WXG DUF5082 PF16888.5 gi|261402688|ref|YP_003246912.1| - 5.3 7.3 8.7 11 6.4 0.0 4.0 5 0 0 5 5 4 0 Domain of unknown function (DUF5082) DUF1640 PF07798.11 gi|261402688|ref|YP_003246912.1| - 8.3 6.4 10.8 0.53 10.3 0.4 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF1640) Baculo_11_kDa PF06143.11 gi|261402690|ref|YP_003246914.1| - 0.03 13.9 0.0 0.096 12.3 0.0 1.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family SapB_1 PF05184.15 gi|261402690|ref|YP_003246914.1| - 0.65 10.1 4.2 4.3 7.5 0.4 2.9 3 0 0 3 3 3 0 Saposin-like type B, region 1 DUF1087 PF06465.13 gi|261402692|ref|YP_003246916.1| - 0.037 14.1 0.4 0.056 13.5 0.4 1.4 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1087) CHS5_N PF16892.5 gi|261402693|ref|YP_003246917.1| - 0.081 12.9 0.1 0.22 11.5 0.1 1.7 1 0 0 1 1 1 0 Chitin biosynthesis protein CHS5 N-terminus DUF1081 PF06448.11 gi|261402693|ref|YP_003246917.1| - 0.14 12.6 1.4 1.7 9.1 0.2 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1081) Unpaired PF15972.5 gi|261402693|ref|YP_003246917.1| - 0.19 11.2 0.6 1.2 8.7 0.1 1.9 1 1 1 2 2 2 0 Unpaired protein DUF2190 PF09956.9 gi|261402694|ref|YP_003246918.1| - 0.002 18.6 6.8 0.0029 18.0 6.8 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2190) Endonuc_Holl PF10107.9 gi|261402695|ref|YP_003246919.1| - 0.034 14.0 4.5 0.042 13.7 4.5 1.3 1 0 0 1 1 1 0 Endonuclease related to archaeal Holliday junction resolvase Tn7_Tnp_TnsA_C PF08721.11 gi|261402695|ref|YP_003246919.1| - 0.035 14.8 1.5 3.4 8.4 1.2 3.1 2 1 2 4 4 4 0 TnsA endonuclease C terminal SNF5 PF04855.12 gi|261402695|ref|YP_003246919.1| - 0.039 13.8 3.6 0.049 13.4 3.6 1.1 1 0 0 1 1 1 0 SNF5 / SMARCB1 / INI1 DUF1048 PF06304.11 gi|261402695|ref|YP_003246919.1| - 0.049 14.1 0.4 0.049 14.1 0.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1048) Cas_Cas1 PF01867.16 gi|261402695|ref|YP_003246919.1| - 0.052 12.7 1.7 0.062 12.4 1.7 1.2 1 0 0 1 1 1 0 CRISPR associated protein Cas1 OTU PF02338.19 gi|261402695|ref|YP_003246919.1| - 0.062 13.8 0.4 0.082 13.4 0.4 1.2 1 0 0 1 1 1 0 OTU-like cysteine protease Peptidase_C23 PF05379.11 gi|261402695|ref|YP_003246919.1| - 0.066 13.3 0.6 0.14 12.3 0.6 1.5 1 0 0 1 1 1 0 Carlavirus endopeptidase EcKinase PF02958.20 gi|261402695|ref|YP_003246919.1| - 0.19 11.0 5.3 0.24 10.7 5.3 1.1 1 0 0 1 1 1 0 Ecdysteroid kinase COQ7 PF03232.13 gi|261402695|ref|YP_003246919.1| - 0.22 11.3 4.9 0.047 13.5 1.9 1.5 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 EAP30 PF04157.16 gi|261402695|ref|YP_003246919.1| - 0.4 9.9 4.0 0.64 9.3 2.4 1.8 1 1 1 2 2 2 0 EAP30/Vps36 family UCH PF00443.29 gi|261402695|ref|YP_003246919.1| - 0.54 9.7 2.5 0.57 9.6 2.5 1.2 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase DUF2232 PF09991.9 gi|261402695|ref|YP_003246919.1| - 1.3 8.1 2.3 1.6 7.8 2.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) PKcGMP_CC PF16808.5 gi|261402697|ref|YP_003246921.1| - 0.00021 21.1 6.4 0.00041 20.1 5.9 1.9 1 1 1 2 2 2 1 Coiled-coil N-terminus of cGMP-dependent protein kinase DivIC PF04977.15 gi|261402697|ref|YP_003246921.1| - 0.00038 20.2 4.0 0.00038 20.2 4.0 2.1 1 1 0 2 2 2 1 Septum formation initiator SlyX PF04102.12 gi|261402697|ref|YP_003246921.1| - 0.0013 19.3 0.2 0.0022 18.5 0.2 1.5 1 1 0 1 1 1 1 SlyX VPS38 PF17649.1 gi|261402697|ref|YP_003246921.1| - 0.0031 16.5 2.4 0.0037 16.2 2.4 1.0 1 0 0 1 1 1 1 Vacuolar protein sorting 38 DUF641 PF04859.12 gi|261402697|ref|YP_003246921.1| - 0.0034 17.7 2.2 0.0049 17.2 2.2 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) Spc7 PF08317.11 gi|261402697|ref|YP_003246921.1| - 0.0036 16.2 4.2 0.0045 15.9 4.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein IFT20 PF14931.6 gi|261402697|ref|YP_003246921.1| - 0.0054 16.9 2.9 0.0066 16.6 2.9 1.0 1 0 0 1 1 1 1 Intraflagellar transport complex B, subunit 20 DUF16 PF01519.16 gi|261402697|ref|YP_003246921.1| - 0.0058 17.1 1.5 0.0076 16.7 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF16 DUF4407 PF14362.6 gi|261402697|ref|YP_003246921.1| - 0.016 14.6 1.1 0.018 14.4 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HIP1_clath_bdg PF16515.5 gi|261402697|ref|YP_003246921.1| - 0.016 15.8 3.0 0.02 15.5 3.0 1.2 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 AAA_13 PF13166.6 gi|261402697|ref|YP_003246921.1| - 0.019 13.7 2.2 0.022 13.4 2.2 1.0 1 0 0 1 1 1 0 AAA domain FlgN PF05130.12 gi|261402697|ref|YP_003246921.1| - 0.019 15.4 1.8 0.026 15.0 1.8 1.2 1 0 0 1 1 1 0 FlgN protein CREPT PF16566.5 gi|261402697|ref|YP_003246921.1| - 0.02 15.1 3.3 0.024 14.8 3.3 1.0 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour DUF3584 PF12128.8 gi|261402697|ref|YP_003246921.1| - 0.02 12.4 3.2 0.022 12.3 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PEARLI-4 PF05278.12 gi|261402697|ref|YP_003246921.1| - 0.02 14.5 2.1 0.028 14.0 2.1 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF3138 PF11336.8 gi|261402697|ref|YP_003246921.1| - 0.027 13.1 0.0 0.03 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) FAM76 PF16046.5 gi|261402697|ref|YP_003246921.1| - 0.031 13.6 1.9 0.034 13.5 1.9 1.1 1 0 0 1 1 1 0 FAM76 protein Spc42p PF11544.8 gi|261402697|ref|YP_003246921.1| - 0.041 13.9 2.9 0.049 13.6 2.0 1.6 1 1 0 1 1 1 0 Spindle pole body component Spc42p Bap31_Bap29_C PF18035.1 gi|261402697|ref|YP_003246921.1| - 0.048 13.7 5.6 0.048 13.7 5.6 2.1 2 1 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain Golgin_A5 PF09787.9 gi|261402697|ref|YP_003246921.1| - 0.051 13.0 4.8 0.061 12.8 4.8 1.0 1 0 0 1 1 1 0 Golgin subfamily A member 5 Troponin PF00992.20 gi|261402697|ref|YP_003246921.1| - 0.056 13.8 7.4 0.1 12.9 7.4 1.5 1 1 0 1 1 1 0 Troponin Atg14 PF10186.9 gi|261402697|ref|YP_003246921.1| - 0.065 12.3 2.1 0.079 12.0 2.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 XLF PF09302.11 gi|261402697|ref|YP_003246921.1| - 0.07 13.3 2.3 0.091 12.9 2.4 1.3 1 1 0 1 1 1 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component I_LWEQ PF01608.17 gi|261402697|ref|YP_003246921.1| - 0.076 13.2 3.5 0.095 12.9 3.5 1.0 1 0 0 1 1 1 0 I/LWEQ domain Vps51 PF08700.11 gi|261402697|ref|YP_003246921.1| - 0.082 13.0 2.7 0.11 12.5 2.0 1.6 1 1 1 2 2 2 0 Vps51/Vps67 FemAB PF02388.16 gi|261402697|ref|YP_003246921.1| - 0.093 11.6 3.3 0.11 11.4 3.3 1.0 1 0 0 1 1 1 0 FemAB family IATP PF04568.12 gi|261402697|ref|YP_003246921.1| - 0.33 11.4 6.1 0.48 10.9 6.0 1.4 1 1 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP DUF4140 PF13600.6 gi|261402697|ref|YP_003246921.1| - 0.48 10.9 3.9 0.64 10.5 3.9 1.3 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Sigma70_r4 PF04545.16 gi|261402698|ref|YP_003246922.1| - 1.3e-06 27.8 0.2 9.1e-05 21.9 0.0 2.7 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|261402698|ref|YP_003246922.1| - 5e-06 26.5 0.1 2.3e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|261402698|ref|YP_003246922.1| - 6.3e-06 25.7 0.5 0.056 13.0 0.0 3.3 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|261402698|ref|YP_003246922.1| - 6.3e-05 22.6 0.0 0.00018 21.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|261402698|ref|YP_003246922.1| - 0.00078 19.5 0.1 0.00078 19.5 0.1 2.0 3 0 0 3 3 1 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|261402698|ref|YP_003246922.1| - 0.00085 18.9 0.1 0.0017 18.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|261402698|ref|YP_003246922.1| - 0.0015 18.0 0.1 0.0034 16.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|261402698|ref|YP_003246922.1| - 0.0018 18.0 0.0 0.0045 16.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|261402698|ref|YP_003246922.1| - 0.0031 17.8 0.2 1.4 9.4 0.2 2.3 2 0 0 2 2 2 1 Transcriptional regulator MerR_1 PF13411.6 gi|261402698|ref|YP_003246922.1| - 0.0041 17.2 0.2 0.01 15.9 0.2 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein Sigma70_ECF PF07638.11 gi|261402698|ref|YP_003246922.1| - 0.019 14.8 0.0 0.034 14.0 0.0 1.4 2 0 0 2 2 2 0 ECF sigma factor HTH_Tnp_1 PF01527.20 gi|261402698|ref|YP_003246922.1| - 0.027 14.8 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 Transposase Phg_2220_C PF09524.10 gi|261402698|ref|YP_003246922.1| - 0.042 13.9 0.8 0.088 12.9 0.2 1.8 2 0 0 2 2 2 0 Conserved phage C-terminus (Phg_2220_C) WYL_3 PF18488.1 gi|261402698|ref|YP_003246922.1| - 0.06 13.7 0.5 0.12 12.7 0.1 1.8 2 0 0 2 2 2 0 WYL domain HTH_40 PF14493.6 gi|261402698|ref|YP_003246922.1| - 0.068 13.6 0.2 0.35 11.4 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain Linker_histone PF00538.19 gi|261402698|ref|YP_003246922.1| - 0.076 13.4 0.8 0.14 12.5 0.1 1.7 2 0 0 2 2 2 0 linker histone H1 and H5 family HTH_3 PF01381.22 gi|261402698|ref|YP_003246922.1| - 0.086 12.9 2.0 0.18 11.9 0.0 2.5 2 1 1 3 3 3 0 Helix-turn-helix HTH_26 PF13443.6 gi|261402698|ref|YP_003246922.1| - 0.14 12.6 0.3 4 8.0 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain UCH PF00443.29 gi|261402700|ref|YP_003246924.1| - 0.048 13.1 0.0 0.048 13.1 0.0 1.1 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase eIF3_N PF09440.10 gi|261402701|ref|YP_003246925.1| - 0.035 14.5 1.2 0.061 13.8 0.3 1.8 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain NAPRTase_N PF17767.1 gi|261402701|ref|YP_003246925.1| - 0.075 13.4 0.1 0.18 12.2 0.1 1.7 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DUF730 PF05325.11 gi|261402701|ref|YP_003246925.1| - 0.15 12.1 1.7 0.27 11.3 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF730) Glyco_hydro_92N PF17678.1 gi|261402702|ref|YP_003246926.1| - 0.054 13.4 0.0 0.054 13.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 92 N-terminal domain FliS PF02561.14 gi|261402703|ref|YP_003246927.1| - 0.0032 17.7 0.1 0.0033 17.7 0.1 1.0 1 0 0 1 1 1 1 Flagellar protein FliS CBFD_NFYB_HMF PF00808.23 gi|261402704|ref|YP_003246928.1| - 6e-09 36.1 1.1 1e-08 35.3 1.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|261402704|ref|YP_003246928.1| - 6.2e-09 36.3 0.2 7.9e-09 36.0 0.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 DUF1931 PF09123.11 gi|261402704|ref|YP_003246928.1| - 0.00026 21.1 0.2 0.00034 20.7 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CENP-T_C PF15511.6 gi|261402704|ref|YP_003246928.1| - 0.00041 20.4 0.0 0.00046 20.3 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|261402704|ref|YP_003246928.1| - 0.00098 19.1 0.0 0.0011 18.9 0.0 1.4 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit CENP-X PF09415.10 gi|261402704|ref|YP_003246928.1| - 0.0042 17.4 0.1 0.0046 17.2 0.1 1.1 1 0 0 1 1 1 1 CENP-S associating Centromere protein X CENP-S PF15630.6 gi|261402704|ref|YP_003246928.1| - 0.082 13.3 0.0 0.11 12.9 0.0 1.2 1 0 0 1 1 1 0 CENP-S protein TFIID-31kDa PF02291.15 gi|261402704|ref|YP_003246928.1| - 0.11 12.5 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit RelB_N PF18506.1 gi|261402706|ref|YP_003246930.1| - 2.5e-13 49.6 3.8 2.5e-13 49.6 3.8 1.6 2 0 0 2 2 2 1 RelB Antitoxin alpha helical domain ParE_toxin PF05016.15 gi|261402707|ref|YP_003246931.1| - 7.6e-10 39.3 1.2 8.9e-10 39.1 1.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE SPOR PF05036.13 gi|261402707|ref|YP_003246931.1| - 0.091 13.2 0.1 0.16 12.4 0.1 1.6 1 1 0 1 1 1 0 Sporulation related domain PCP_red PF08369.10 gi|261402707|ref|YP_003246931.1| - 0.15 12.3 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit DUF1828 PF08861.10 gi|261402708|ref|YP_003246932.1| - 6.7e-23 80.8 0.1 1.3e-22 79.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF1828 DUF1829 PF08862.10 gi|261402708|ref|YP_003246932.1| - 3.1e-16 59.6 0.2 6.4e-16 58.6 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF1829 CAP PF00188.26 gi|261402710|ref|YP_003246934.1| - 1e-08 36.0 0.6 1.9e-07 32.0 0.6 2.2 1 1 0 1 1 1 1 Cysteine-rich secretory protein family Orf78 PF06024.12 gi|261402710|ref|YP_003246934.1| - 0.078 13.3 3.4 0.14 12.5 0.3 2.1 2 0 0 2 2 2 0 Orf78 (ac78) AAA_21 PF13304.6 gi|261402710|ref|YP_003246934.1| - 0.12 12.2 1.1 0.14 12.0 1.1 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF3899 PF13038.6 gi|261402710|ref|YP_003246934.1| - 1.4 9.4 4.5 0.35 11.4 1.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) Cullin_Nedd8 PF10557.9 gi|261402711|ref|YP_003246935.1| - 1.9 8.6 5.7 11 6.1 0.2 2.8 2 1 0 2 2 2 0 Cullin protein neddylation domain ScsC_N PF18312.1 gi|261402712|ref|YP_003246936.1| - 0.033 14.0 0.2 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain HTH_5 PF01022.20 gi|261402713|ref|YP_003246937.1| - 3.7e-08 33.1 0.5 6e-08 32.4 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|261402713|ref|YP_003246937.1| - 3e-07 29.9 0.4 4.8e-07 29.2 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|261402713|ref|YP_003246937.1| - 3.9e-07 29.9 0.2 9.6e-07 28.6 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|261402713|ref|YP_003246937.1| - 4e-07 30.1 0.2 6.3e-07 29.5 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|261402713|ref|YP_003246937.1| - 2e-06 27.5 0.2 3.2e-06 26.8 0.2 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|261402713|ref|YP_003246937.1| - 2.1e-06 27.6 0.4 4.1e-06 26.7 0.4 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 gi|261402713|ref|YP_003246937.1| - 3.4e-06 26.9 1.8 3.9e-06 26.7 1.8 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|261402713|ref|YP_003246937.1| - 1.6e-05 24.7 0.0 2.4e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|261402713|ref|YP_003246937.1| - 1.7e-05 24.7 1.3 4.8e-05 23.3 1.3 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|261402713|ref|YP_003246937.1| - 2.8e-05 24.1 0.0 3.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.6 gi|261402713|ref|YP_003246937.1| - 0.00063 19.5 0.6 0.0014 18.4 0.5 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|261402713|ref|YP_003246937.1| - 0.00066 19.8 0.0 0.0007 19.7 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation TrmB PF01978.19 gi|261402713|ref|YP_003246937.1| - 0.00082 19.2 0.1 0.0013 18.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|261402713|ref|YP_003246937.1| - 0.0026 17.8 0.1 0.0039 17.3 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_26 PF13443.6 gi|261402713|ref|YP_003246937.1| - 0.0054 17.1 0.1 0.0093 16.4 0.1 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_27 PF13463.6 gi|261402713|ref|YP_003246937.1| - 0.0084 16.6 0.1 0.013 15.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain RTP PF02334.16 gi|261402713|ref|YP_003246937.1| - 0.011 16.3 0.5 0.014 16.0 0.5 1.3 1 0 0 1 1 1 0 Replication terminator protein Fe_dep_repress PF01325.19 gi|261402713|ref|YP_003246937.1| - 0.014 15.5 0.2 0.024 14.8 0.2 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rio2_N PF09202.11 gi|261402713|ref|YP_003246937.1| - 0.015 15.5 0.2 0.021 15.0 0.2 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Rrf2 PF02082.20 gi|261402713|ref|YP_003246937.1| - 0.018 15.4 0.3 0.51 10.7 0.1 2.1 1 1 1 2 2 2 0 Transcriptional regulator DUF1803 PF08820.10 gi|261402713|ref|YP_003246937.1| - 0.039 14.0 0.0 0.064 13.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) FeoC PF09012.10 gi|261402713|ref|YP_003246937.1| - 0.043 13.9 0.1 0.098 12.7 0.1 1.7 1 1 0 1 1 1 0 FeoC like transcriptional regulator DUF1495 PF07381.11 gi|261402713|ref|YP_003246937.1| - 0.058 13.2 0.1 0.15 11.9 0.1 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) RQC PF09382.10 gi|261402713|ref|YP_003246937.1| - 0.058 13.2 0.3 1.8 8.4 0.1 2.2 1 1 1 2 2 2 0 RQC domain HTH_36 PF13730.6 gi|261402713|ref|YP_003246937.1| - 0.07 13.1 0.2 0.23 11.5 0.1 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|261402713|ref|YP_003246937.1| - 0.1 12.6 0.4 0.19 11.7 0.4 1.4 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|261402713|ref|YP_003246937.1| - 0.11 12.5 0.1 0.24 11.4 0.1 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|261402713|ref|YP_003246937.1| - 0.52 10.4 3.0 1.6 8.9 0.7 2.7 2 2 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) DNA_ligase_A_N PF04675.14 gi|261402714|ref|YP_003246938.1| - 0.055 13.8 0.3 0.17 12.2 0.3 1.8 1 1 0 1 1 1 0 DNA ligase N terminus HTH_24 PF13412.6 gi|261402715|ref|YP_003246939.1| - 0.00079 18.9 0.8 0.0025 17.3 0.8 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|261402715|ref|YP_003246939.1| - 0.0014 18.5 0.6 0.0083 16.0 0.6 2.4 1 0 0 1 1 1 1 HTH domain Mg_chelatase PF01078.21 gi|261402715|ref|YP_003246939.1| - 0.0018 17.7 0.0 0.14 11.5 0.0 2.5 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI PCI PF01399.27 gi|261402715|ref|YP_003246939.1| - 0.0025 18.3 0.8 0.0025 18.3 0.8 3.1 3 0 0 3 3 3 1 PCI domain MarR PF01047.22 gi|261402715|ref|YP_003246939.1| - 0.0041 17.0 0.1 0.015 15.2 0.1 1.9 1 0 0 1 1 1 1 MarR family AAA_5 PF07728.14 gi|261402715|ref|YP_003246939.1| - 0.019 14.9 0.0 0.42 10.6 0.0 2.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HemN_C PF06969.16 gi|261402715|ref|YP_003246939.1| - 0.094 12.8 1.4 0.32 11.1 0.9 2.2 2 0 0 2 2 2 0 HemN C-terminal domain AAA_16 PF13191.6 gi|261402715|ref|YP_003246939.1| - 0.1 13.0 0.0 0.32 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Sigma54_activ_2 PF14532.6 gi|261402715|ref|YP_003246939.1| - 0.1 12.7 0.3 0.84 9.7 0.0 2.7 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|261402715|ref|YP_003246939.1| - 0.14 12.7 3.2 3.4 8.2 0.0 3.6 4 0 0 4 4 4 0 AAA domain DUF2080 PF09853.9 gi|261402716|ref|YP_003246940.1| - 2e-08 33.8 1.7 2.8e-08 33.4 1.7 1.2 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) DUF3042 PF11240.8 gi|261402716|ref|YP_003246940.1| - 9.4 6.4 8.5 0.63 10.1 0.4 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3042) DUF1959 PF09218.10 gi|261402718|ref|YP_003246942.1| - 0.015 15.4 0.2 0.016 15.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1959) HHH_2 PF12826.7 gi|261402718|ref|YP_003246942.1| - 0.084 13.0 0.2 0.17 12.0 0.2 1.6 1 1 0 1 1 1 0 Helix-hairpin-helix motif DUF2540 PF10802.8 gi|261402719|ref|YP_003246943.1| - 1.9e-33 114.4 3.7 2.1e-33 114.2 3.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2540) HTH_micro PF17007.5 gi|261402719|ref|YP_003246943.1| - 0.0034 16.3 0.5 0.0041 16.0 0.5 1.0 1 0 0 1 1 1 1 HTH-like Sde2_N_Ubi PF13019.6 gi|261402719|ref|YP_003246943.1| - 0.0041 17.0 0.6 0.0048 16.7 0.6 1.1 1 0 0 1 1 1 1 Silencing defective 2 N-terminal ubiquitin domain Phage_integrase PF00589.22 gi|261402720|ref|YP_003246944.1| - 3.9e-35 121.2 0.1 1.1e-34 119.8 0.1 1.7 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|261402720|ref|YP_003246944.1| - 1.5e-15 57.4 1.3 3.2e-15 56.4 1.3 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|261402720|ref|YP_003246944.1| - 3.7e-07 30.4 3.6 0.004 17.4 2.2 3.3 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|261402720|ref|YP_003246944.1| - 0.00031 21.0 5.2 0.00031 21.0 5.2 2.6 3 1 0 3 3 3 1 Phage integrase SAM-like domain DUF1801 PF08818.11 gi|261402720|ref|YP_003246944.1| - 0.026 15.0 0.1 0.089 13.3 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DU1801) DED PF01335.21 gi|261402720|ref|YP_003246944.1| - 0.042 14.2 0.4 0.042 14.2 0.4 3.4 5 0 0 5 5 5 0 Death effector domain tRNA-synt_1 PF00133.22 gi|261402721|ref|YP_003246945.1| - 6.3e-156 520.1 12.6 8.1e-156 519.8 8.8 2.3 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|261402721|ref|YP_003246945.1| - 1.9e-35 122.1 1.1 5.3e-35 120.6 1.1 1.8 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|261402721|ref|YP_003246945.1| - 2.2e-25 89.2 10.7 5.1e-15 55.1 0.0 3.8 4 0 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|261402721|ref|YP_003246945.1| - 1.7e-06 27.6 0.0 0.013 14.8 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|261402721|ref|YP_003246945.1| - 2.6e-05 23.3 0.6 0.0012 17.9 3.1 2.5 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|261402721|ref|YP_003246945.1| - 0.00016 21.3 0.2 0.00085 18.9 0.0 2.4 2 1 1 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.7 gi|261402721|ref|YP_003246945.1| - 0.0036 17.3 1.2 0.15 12.1 0.2 3.1 3 0 0 3 3 3 1 Double zinc ribbon tRNA-synt_1c PF00749.21 gi|261402721|ref|YP_003246945.1| - 0.036 13.0 0.4 4.6 6.0 0.1 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1b PF00579.25 gi|261402721|ref|YP_003246945.1| - 0.042 13.2 0.0 1.1 8.6 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) ADK_lid PF05191.14 gi|261402721|ref|YP_003246945.1| - 0.11 12.5 4.3 0.075 13.0 2.0 2.0 2 0 0 2 2 2 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.6 gi|261402721|ref|YP_003246945.1| - 0.14 12.1 2.9 0.19 11.7 0.4 2.5 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|261402721|ref|YP_003246945.1| - 1.1 8.8 7.7 3.7 7.1 4.5 3.2 2 1 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|261402721|ref|YP_003246945.1| - 2.6 7.7 8.0 9.9 5.9 0.1 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Aminotran_4 PF01063.19 gi|261402722|ref|YP_003246946.1| - 7.1e-56 189.6 0.0 8.3e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV LysE PF01810.18 gi|261402723|ref|YP_003246947.1| - 0.08 12.4 0.0 0.08 12.4 0.0 1.0 1 0 0 1 1 1 0 LysE type translocator DUF4870 PF09685.10 gi|261402724|ref|YP_003246948.1| - 6.1e-07 29.5 12.0 8.1e-07 29.1 12.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) WBP-1 PF11669.8 gi|261402724|ref|YP_003246948.1| - 0.36 11.5 0.2 0.36 11.5 0.2 1.7 2 0 0 2 2 2 0 WW domain-binding protein 1 Peptidase_U4 PF03419.13 gi|261402724|ref|YP_003246948.1| - 0.47 9.7 11.9 0.57 9.4 11.9 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA EMP70 PF02990.16 gi|261402724|ref|YP_003246948.1| - 2.5 6.7 11.5 3.3 6.2 11.5 1.3 1 1 0 1 1 1 0 Endomembrane protein 70 Phage_holin_3_6 PF07332.11 gi|261402724|ref|YP_003246948.1| - 7.3 6.7 13.6 6.6 6.8 1.3 2.1 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane_5 PF13346.6 gi|261402728|ref|YP_003246952.1| - 0.0032 17.1 22.9 0.004 16.7 22.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Fumarate_red_C PF02300.17 gi|261402728|ref|YP_003246952.1| - 2.3 8.3 9.1 1.2 9.2 3.2 2.3 2 1 1 3 3 3 0 Fumarate reductase subunit C DUF2304 PF10066.9 gi|261402728|ref|YP_003246952.1| - 6.6 7.0 15.5 5.1 7.4 13.7 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF2663 PF10864.8 gi|261402728|ref|YP_003246952.1| - 8.3 6.8 9.4 0.62 10.5 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) TMEM138 PF14935.6 gi|261402729|ref|YP_003246953.1| - 1.5 9.5 8.3 1.9 9.1 8.3 1.1 1 0 0 1 1 1 0 Transmembrane protein 138 DUF5408 PF17402.2 gi|261402729|ref|YP_003246953.1| - 2.3 8.1 5.2 0.62 10.0 1.9 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5408) DUF2070 PF09843.9 gi|261402729|ref|YP_003246953.1| - 4.4 5.5 12.7 5.2 5.3 12.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC2_membrane_3 PF12698.7 gi|261402730|ref|YP_003246954.1| - 0.009 15.2 0.2 0.012 14.7 0.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF4302 PF14135.6 gi|261402730|ref|YP_003246954.1| - 0.011 15.6 2.4 0.015 15.2 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4302) Nitro_FeMo-Co PF02579.17 gi|261402731|ref|YP_003246955.1| - 3.1e-08 33.9 0.2 4.2e-07 30.2 0.2 2.0 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Pedibin PF08182.11 gi|261402731|ref|YP_003246955.1| - 0.003 17.3 0.3 0.0088 15.8 0.3 1.8 1 0 0 1 1 1 1 Pedibin/Hym-346 family TnpW PF14202.6 gi|261402731|ref|YP_003246955.1| - 0.0085 15.9 0.1 0.02 14.7 0.1 1.7 1 0 0 1 1 1 1 Transposon-encoded protein TnpW Xan_ur_permease PF00860.20 gi|261402732|ref|YP_003246956.1| - 2.3e-55 187.9 48.6 2.7e-55 187.7 48.6 1.0 1 0 0 1 1 1 1 Permease family DUF3333 PF11812.8 gi|261402732|ref|YP_003246956.1| - 0.73 10.0 2.2 2.7 8.2 2.2 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) ABC2_membrane_3 PF12698.7 gi|261402733|ref|YP_003246957.1| - 7.9e-52 176.5 34.0 9.2e-52 176.3 34.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|261402733|ref|YP_003246957.1| - 3.6e-13 49.4 16.8 4.8e-13 49.0 16.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein YwiC PF14256.6 gi|261402733|ref|YP_003246957.1| - 0.021 15.2 6.0 0.032 14.6 4.6 2.0 2 0 0 2 2 2 0 YwiC-like protein ABC_tran PF00005.27 gi|261402734|ref|YP_003246958.1| - 2e-24 86.7 0.0 5.3e-24 85.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|261402734|ref|YP_003246958.1| - 1e-11 45.2 0.6 8e-07 29.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|261402734|ref|YP_003246958.1| - 0.0025 16.5 0.3 1.1 7.8 0.1 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|261402734|ref|YP_003246958.1| - 0.0058 17.2 10.3 0.027 15.0 10.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|261402734|ref|YP_003246958.1| - 0.006 16.1 3.8 0.34 10.3 0.9 2.9 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|261402734|ref|YP_003246958.1| - 0.029 14.1 0.1 0.05 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|261402734|ref|YP_003246958.1| - 0.18 11.5 0.5 1.7 8.4 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|261402734|ref|YP_003246958.1| - 0.22 11.8 0.0 0.57 10.5 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF5591 PF17884.1 gi|261402735|ref|YP_003246959.1| - 1.2e-41 142.1 0.9 1.2e-41 142.1 0.9 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) PUA PF01472.20 gi|261402735|ref|YP_003246959.1| - 4.1e-12 45.9 0.0 1.1e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 PUA domain TGT PF01702.18 gi|261402735|ref|YP_003246959.1| - 0.00012 21.3 0.0 0.3 10.2 0.1 2.2 2 0 0 2 2 2 2 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.6 gi|261402735|ref|YP_003246959.1| - 0.0012 18.9 0.0 0.0034 17.5 0.0 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase Par3_HAL_N_term PF12053.8 gi|261402735|ref|YP_003246959.1| - 0.027 14.7 0.0 0.18 12.0 0.0 2.2 2 0 0 2 2 2 0 N-terminal of Par3 and HAL proteins Methyltransf_9 PF08003.11 gi|261402735|ref|YP_003246959.1| - 0.11 11.4 0.1 0.24 10.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) NPM1-C PF16276.5 gi|261402735|ref|YP_003246959.1| - 0.63 10.1 3.1 26 4.9 0.4 3.1 2 0 0 2 2 2 0 Nucleophosmin C-terminal domain Prefoldin_2 PF01920.20 gi|261402736|ref|YP_003246960.1| - 0.0012 18.8 3.3 0.0047 16.9 1.0 2.2 1 1 1 2 2 2 1 Prefoldin subunit HMMR_N PF15905.5 gi|261402736|ref|YP_003246960.1| - 0.0026 17.3 3.6 0.0038 16.8 3.6 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Prefoldin PF02996.17 gi|261402736|ref|YP_003246960.1| - 0.0083 16.0 3.2 0.15 12.0 0.7 2.5 2 0 0 2 2 2 1 Prefoldin subunit Mei5 PF10376.9 gi|261402736|ref|YP_003246960.1| - 0.01 15.7 4.5 0.012 15.5 4.5 1.2 1 0 0 1 1 1 1 Double-strand recombination repair protein Occludin_ELL PF07303.13 gi|261402736|ref|YP_003246960.1| - 0.011 16.5 1.9 1.1 10.0 0.1 2.2 2 0 0 2 2 2 0 Occludin homology domain Prominin PF05478.11 gi|261402736|ref|YP_003246960.1| - 0.023 12.7 4.1 0.024 12.6 2.9 1.5 1 1 1 2 2 2 0 Prominin DUF2115 PF09888.9 gi|261402736|ref|YP_003246960.1| - 0.025 15.1 1.5 0.044 14.3 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) YgaB PF14182.6 gi|261402736|ref|YP_003246960.1| - 0.04 14.3 1.7 4.8 7.6 0.0 2.3 2 0 0 2 2 2 0 YgaB-like protein DUF1664 PF07889.12 gi|261402736|ref|YP_003246960.1| - 0.051 13.6 1.9 0.79 9.8 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|261402736|ref|YP_003246960.1| - 0.058 13.9 5.1 32 5.1 5.1 2.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Cauli_DNA-bind PF03310.13 gi|261402736|ref|YP_003246960.1| - 0.065 13.3 1.7 0.13 12.3 0.4 2.0 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein Baculo_PEP_C PF04513.12 gi|261402736|ref|YP_003246960.1| - 0.076 13.0 2.0 2.2 8.3 1.0 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus GLTSCR1 PF15249.6 gi|261402736|ref|YP_003246960.1| - 0.084 13.3 0.3 0.19 12.2 0.3 1.6 1 0 0 1 1 1 0 Conserved region of unknown function on GLTSCR protein Rho_Binding PF08912.11 gi|261402736|ref|YP_003246960.1| - 0.09 13.6 1.5 0.09 13.6 1.5 2.2 2 0 0 2 2 2 0 Rho Binding BLOC1_2 PF10046.9 gi|261402736|ref|YP_003246960.1| - 0.099 13.0 9.8 1.7 9.0 0.4 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Synaptonemal_3 PF15191.6 gi|261402736|ref|YP_003246960.1| - 0.1 12.4 3.4 1.1 9.1 1.1 2.3 2 0 0 2 2 2 0 Synaptonemal complex central element protein 3 PCRF PF03462.18 gi|261402736|ref|YP_003246960.1| - 0.11 12.4 3.8 0.86 9.4 3.8 1.9 1 1 0 1 1 1 0 PCRF domain CompInhib_SCIN PF11546.8 gi|261402736|ref|YP_003246960.1| - 0.11 12.5 0.4 0.11 12.5 0.4 1.9 1 1 0 2 2 2 0 Staphylococcal complement inhibitor SCIN APG6_N PF17675.1 gi|261402736|ref|YP_003246960.1| - 0.14 12.7 5.6 0.43 11.1 2.1 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region Fzo_mitofusin PF04799.13 gi|261402736|ref|YP_003246960.1| - 0.17 11.4 3.0 2.1 7.8 0.1 2.1 2 0 0 2 2 2 0 fzo-like conserved region KELK PF15796.5 gi|261402736|ref|YP_003246960.1| - 0.19 12.2 4.3 0.27 11.7 0.4 2.3 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DASH_Duo1 PF08651.10 gi|261402736|ref|YP_003246960.1| - 0.25 11.2 7.1 4.3 7.2 0.1 3.5 2 2 1 4 4 4 0 DASH complex subunit Duo1 DUF4665 PF15679.5 gi|261402736|ref|YP_003246960.1| - 0.29 11.8 7.0 4.6 7.9 1.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4665) DASH_Dad3 PF08656.10 gi|261402736|ref|YP_003246960.1| - 0.33 11.0 4.8 8.4 6.6 4.8 2.8 1 1 0 1 1 1 0 DASH complex subunit Dad3 IFP_35_N PF07334.13 gi|261402736|ref|YP_003246960.1| - 0.42 10.7 4.2 1.6 8.9 0.8 2.7 2 1 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus DASH_Dam1 PF08653.10 gi|261402736|ref|YP_003246960.1| - 0.68 9.8 3.6 7.2 6.5 0.1 3.0 2 1 1 3 3 3 0 DASH complex subunit Dam1 Rx_N PF18052.1 gi|261402736|ref|YP_003246960.1| - 0.74 10.1 4.4 17 5.7 0.4 2.7 2 1 1 3 3 3 0 Rx N-terminal domain Med4 PF10018.9 gi|261402736|ref|YP_003246960.1| - 1.9 8.2 5.1 0.74 9.5 1.0 2.0 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 CCDC-167 PF15188.6 gi|261402736|ref|YP_003246960.1| - 3.1 8.2 8.7 1.7 9.0 2.7 2.5 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 XhlA PF10779.9 gi|261402736|ref|YP_003246960.1| - 4.9 7.4 10.8 1.5 9.0 5.2 2.5 2 1 0 2 2 2 0 Haemolysin XhlA Prefoldin_2 PF01920.20 gi|261402737|ref|YP_003246961.1| - 2.5e-29 101.3 27.1 2.8e-29 101.2 27.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit FlaC_arch PF05377.11 gi|261402737|ref|YP_003246961.1| - 1.4e-05 25.4 17.8 0.00027 21.3 6.3 2.3 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) DUF4795 PF16043.5 gi|261402737|ref|YP_003246961.1| - 0.00047 19.8 15.3 0.00068 19.3 15.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) CLZ PF16526.5 gi|261402737|ref|YP_003246961.1| - 0.0011 19.3 17.6 0.0017 18.7 6.1 2.2 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Laminin_II PF06009.12 gi|261402737|ref|YP_003246961.1| - 0.0039 17.2 14.1 0.0096 15.9 14.1 1.6 1 1 0 1 1 1 1 Laminin Domain II XhlA PF10779.9 gi|261402737|ref|YP_003246961.1| - 0.0039 17.4 7.4 0.0039 17.4 7.4 2.2 2 0 0 2 2 2 1 Haemolysin XhlA Fib_alpha PF08702.10 gi|261402737|ref|YP_003246961.1| - 0.0045 17.2 14.8 0.008 16.4 14.8 1.6 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family BRI3BP PF14965.6 gi|261402737|ref|YP_003246961.1| - 0.0056 16.2 0.7 0.0056 16.2 0.7 2.0 1 1 2 3 3 2 1 Negative regulator of p53/TP53 FUSC PF04632.12 gi|261402737|ref|YP_003246961.1| - 0.0074 14.9 1.3 0.0088 14.6 1.3 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein family DHR10 PF18595.1 gi|261402737|ref|YP_003246961.1| - 0.0075 16.3 25.8 0.2 11.7 6.8 2.0 2 0 0 2 2 2 2 Designed helical repeat protein 10 domain Prefoldin PF02996.17 gi|261402737|ref|YP_003246961.1| - 0.0077 16.1 21.8 0.013 15.5 8.2 2.5 1 1 1 2 2 2 1 Prefoldin subunit UBN_AB PF14075.6 gi|261402737|ref|YP_003246961.1| - 0.0086 15.8 14.5 0.012 15.4 14.5 1.2 1 0 0 1 1 1 1 Ubinuclein conserved middle domain GIT_CC PF16559.5 gi|261402737|ref|YP_003246961.1| - 0.0089 15.9 4.4 0.0089 15.9 4.4 2.6 2 1 0 2 2 1 1 GIT coiled-coil Rho guanine nucleotide exchange factor TPR_MLP1_2 PF07926.12 gi|261402737|ref|YP_003246961.1| - 0.013 15.5 22.4 0.3 11.1 5.4 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4201 PF13870.6 gi|261402737|ref|YP_003246961.1| - 0.015 15.1 3.8 0.015 15.1 3.8 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4201) Syntaxin-6_N PF09177.11 gi|261402737|ref|YP_003246961.1| - 0.02 15.5 8.7 1 9.9 1.8 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Cep57_MT_bd PF06657.13 gi|261402737|ref|YP_003246961.1| - 0.02 15.3 3.2 0.02 15.3 3.2 3.1 1 1 1 2 2 1 0 Centrosome microtubule-binding domain of Cep57 CENP-F_leu_zip PF10473.9 gi|261402737|ref|YP_003246961.1| - 0.024 14.7 25.2 0.067 13.2 6.7 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.11 gi|261402737|ref|YP_003246961.1| - 0.026 12.5 8.7 0.033 12.2 8.7 1.1 1 0 0 1 1 1 0 Prominin Snf7 PF03357.21 gi|261402737|ref|YP_003246961.1| - 0.031 13.9 17.3 0.25 10.9 6.9 2.1 2 0 0 2 2 2 0 Snf7 Prefoldin_3 PF13758.6 gi|261402737|ref|YP_003246961.1| - 0.037 14.1 7.4 0.051 13.6 7.4 1.2 1 0 0 1 1 1 0 Prefoldin subunit KASH_CCD PF14662.6 gi|261402737|ref|YP_003246961.1| - 0.044 13.6 23.1 0.06 13.2 8.0 2.0 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Filament PF00038.21 gi|261402737|ref|YP_003246961.1| - 0.069 12.7 20.8 0.5 9.9 7.4 2.0 1 1 1 2 2 2 0 Intermediate filament protein Tektin PF03148.14 gi|261402737|ref|YP_003246961.1| - 0.071 11.8 17.2 0.48 9.1 5.9 2.1 2 0 0 2 2 2 0 Tektin family Spc24 PF08286.11 gi|261402737|ref|YP_003246961.1| - 0.082 13.2 20.6 0.78 10.0 7.7 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Uds1 PF15456.6 gi|261402737|ref|YP_003246961.1| - 0.11 12.6 13.6 0.16 12.2 13.6 1.2 1 0 0 1 1 1 0 Up-regulated During Septation LppA PF16708.5 gi|261402737|ref|YP_003246961.1| - 0.13 12.2 5.8 3.6 7.5 0.4 2.2 1 1 1 2 2 2 0 Lipoprotein confined to pathogenic Mycobacterium Spc7 PF08317.11 gi|261402737|ref|YP_003246961.1| - 0.18 10.7 23.3 0.099 11.5 5.4 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein FPP PF05911.11 gi|261402737|ref|YP_003246961.1| - 0.18 10.0 20.9 0.23 9.6 20.9 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Bcr-Abl_Oligo PF09036.10 gi|261402737|ref|YP_003246961.1| - 0.19 11.8 15.3 0.032 14.2 3.5 2.6 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain Baculo_PEP_C PF04513.12 gi|261402737|ref|YP_003246961.1| - 0.19 11.7 10.5 4.2 7.4 10.5 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ABC1 PF03109.16 gi|261402737|ref|YP_003246961.1| - 0.2 11.9 3.4 0.44 10.7 0.3 2.0 2 0 0 2 2 2 0 ABC1 family APG6_N PF17675.1 gi|261402737|ref|YP_003246961.1| - 0.27 11.8 25.9 0.92 10.0 10.6 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region YabA PF06156.13 gi|261402737|ref|YP_003246961.1| - 0.28 11.8 18.9 0.63 10.7 5.7 2.1 1 1 0 2 2 2 0 Initiation control protein YabA GCN5L1 PF06320.13 gi|261402737|ref|YP_003246961.1| - 0.31 11.2 13.5 1.1 9.5 2.2 2.0 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Uso1_p115_C PF04871.13 gi|261402737|ref|YP_003246961.1| - 0.31 11.4 20.9 0.92 9.9 20.9 1.7 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4988 PF16378.5 gi|261402737|ref|YP_003246961.1| - 0.32 10.6 3.8 0.4 10.3 0.7 2.0 2 0 0 2 2 2 0 Domain of unknown function YlqD PF11068.8 gi|261402737|ref|YP_003246961.1| - 0.34 11.3 21.7 1.1 9.6 7.5 2.1 2 0 0 2 2 2 0 YlqD protein PRP1_N PF06424.12 gi|261402737|ref|YP_003246961.1| - 0.36 11.2 10.1 0.87 10.0 10.1 1.6 1 1 0 1 1 1 0 PRP1 splicing factor, N-terminal AAA_11 PF13086.6 gi|261402737|ref|YP_003246961.1| - 0.41 10.4 8.7 0.46 10.2 8.7 1.0 1 0 0 1 1 1 0 AAA domain CdvA PF18822.1 gi|261402737|ref|YP_003246961.1| - 0.43 10.4 22.6 0.67 9.8 2.3 2.6 2 1 0 2 2 2 0 CdvA-like coiled-coil domain DUF1664 PF07889.12 gi|261402737|ref|YP_003246961.1| - 0.44 10.6 14.2 0.59 10.2 4.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) YojJ PF10372.9 gi|261402737|ref|YP_003246961.1| - 0.44 10.7 18.1 0.13 12.4 5.3 2.1 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus WXG100 PF06013.12 gi|261402737|ref|YP_003246961.1| - 0.49 10.7 9.5 2.6 8.3 0.3 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG COG5 PF10392.9 gi|261402737|ref|YP_003246961.1| - 0.51 10.5 9.8 1.1 9.5 9.0 1.9 1 1 0 1 1 1 0 Golgi transport complex subunit 5 HemX PF04375.14 gi|261402737|ref|YP_003246961.1| - 0.57 9.4 22.2 6.8 5.9 22.2 1.9 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase FAA_hydro_N_2 PF18288.1 gi|261402737|ref|YP_003246961.1| - 0.58 10.6 4.2 2.3 8.7 1.4 2.2 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal domain 2 DUF4404 PF14357.6 gi|261402737|ref|YP_003246961.1| - 0.69 10.6 16.4 1.1 9.9 2.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) DUF4618 PF15397.6 gi|261402737|ref|YP_003246961.1| - 0.71 9.2 25.9 0.33 10.3 10.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Exonuc_VII_L PF02601.15 gi|261402737|ref|YP_003246961.1| - 0.73 9.3 10.1 0.86 9.1 10.1 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit E2R135 PF11570.8 gi|261402737|ref|YP_003246961.1| - 0.77 10.1 5.7 0.32 11.3 1.6 1.9 1 1 1 2 2 2 0 Coiled-coil receptor-binding R-domain of colicin E2 Herpes_UL6 PF01763.16 gi|261402737|ref|YP_003246961.1| - 0.89 8.0 18.0 0.65 8.4 4.2 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like Seryl_tRNA_N PF02403.22 gi|261402737|ref|YP_003246961.1| - 0.98 9.7 21.4 0.41 10.9 15.7 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Sipho_Gp157 PF05565.11 gi|261402737|ref|YP_003246961.1| - 1.1 9.2 18.2 3.1 7.8 18.2 1.7 1 1 0 1 1 1 0 Siphovirus Gp157 Rotamase PF00639.21 gi|261402737|ref|YP_003246961.1| - 1.2 10.2 8.6 0.4 11.7 1.0 2.2 1 1 1 2 2 2 0 PPIC-type PPIASE domain DUF5082 PF16888.5 gi|261402737|ref|YP_003246961.1| - 1.4 9.2 16.0 3.8 7.8 15.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) DASH_Dam1 PF08653.10 gi|261402737|ref|YP_003246961.1| - 1.4 8.8 7.5 5.3 6.9 0.6 3.4 3 1 0 3 3 3 0 DASH complex subunit Dam1 Tropomyosin_1 PF12718.7 gi|261402737|ref|YP_003246961.1| - 1.4 9.0 27.3 1.9 8.6 13.4 2.0 1 1 0 2 2 2 0 Tropomyosin like DUF4446 PF14584.6 gi|261402737|ref|YP_003246961.1| - 1.5 8.8 15.8 0.76 9.8 5.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Laminin_I PF06008.14 gi|261402737|ref|YP_003246961.1| - 1.5 8.4 20.2 8.2 6.1 20.4 1.7 1 1 0 1 1 1 0 Laminin Domain I DUF4407 PF14362.6 gi|261402737|ref|YP_003246961.1| - 1.6 8.0 12.5 3 7.1 12.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) NPV_P10 PF05531.12 gi|261402737|ref|YP_003246961.1| - 1.7 9.2 11.8 2.3 8.7 1.2 2.4 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ParD_antitoxin PF03693.14 gi|261402737|ref|YP_003246961.1| - 1.8 9.1 5.7 2.9 8.4 0.1 2.4 2 1 0 2 2 2 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Cob_adeno_trans PF01923.18 gi|261402737|ref|YP_003246961.1| - 2.1 8.5 6.9 4.1 7.5 6.9 1.5 1 1 0 1 1 1 0 Cobalamin adenosyltransferase Nup54 PF13874.6 gi|261402737|ref|YP_003246961.1| - 2.1 8.4 17.5 26 4.9 17.5 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 FliD_C PF07195.12 gi|261402737|ref|YP_003246961.1| - 2.2 7.7 10.6 0.29 10.5 2.1 2.0 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus GrpE PF01025.19 gi|261402737|ref|YP_003246961.1| - 2.3 7.9 16.8 4.6 6.9 8.7 2.1 2 0 0 2 2 2 0 GrpE Golgin_A5 PF09787.9 gi|261402737|ref|YP_003246961.1| - 2.7 7.4 23.1 7 6.0 23.1 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 CENP-Q PF13094.6 gi|261402737|ref|YP_003246961.1| - 3.3 7.9 21.2 1.4 9.1 5.3 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Jnk-SapK_ap_N PF09744.9 gi|261402737|ref|YP_003246961.1| - 3.5 7.9 24.1 6.7 6.9 24.1 1.5 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 Ribosomal_S20p PF01649.18 gi|261402737|ref|YP_003246961.1| - 3.6 8.3 9.7 5.8e+02 1.2 9.7 2.3 1 1 0 1 1 1 0 Ribosomal protein S20 MapZ_EC1 PF18041.1 gi|261402737|ref|YP_003246961.1| - 3.9 7.7 14.5 1.4 9.2 10.1 2.0 1 1 1 2 2 2 0 MapZ extracellular domain 1 ATG16 PF08614.11 gi|261402737|ref|YP_003246961.1| - 3.9 7.6 22.4 2 8.6 5.4 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Nup88 PF10168.9 gi|261402737|ref|YP_003246961.1| - 4.7 4.9 16.8 5.6 4.7 16.8 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF3450 PF11932.8 gi|261402737|ref|YP_003246961.1| - 4.8 6.4 19.9 1 8.6 6.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF5320 PF17253.2 gi|261402737|ref|YP_003246961.1| - 5.1 8.2 15.5 2.9 9.0 3.8 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Anti-adapt_IraP PF10796.9 gi|261402737|ref|YP_003246961.1| - 5.1 7.7 17.0 0.08 13.5 5.6 2.1 1 1 1 2 2 2 0 Sigma-S stabilisation anti-adaptor protein HAUS-augmin3 PF14932.6 gi|261402737|ref|YP_003246961.1| - 5.3 6.5 22.8 2.1 7.9 8.0 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 GAGBD PF16828.5 gi|261402737|ref|YP_003246961.1| - 5.4 7.1 15.1 4.8 7.3 1.1 2.5 2 1 0 2 2 2 0 GAG-binding domain on surface antigen FapA PF03961.13 gi|261402737|ref|YP_003246961.1| - 5.6 5.5 18.8 9.7 4.7 18.8 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A BLOC1_2 PF10046.9 gi|261402737|ref|YP_003246961.1| - 5.7 7.3 18.7 3.9 7.8 6.6 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.19 gi|261402737|ref|YP_003246961.1| - 5.7 4.7 14.2 8.5 4.1 14.2 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family FAM76 PF16046.5 gi|261402737|ref|YP_003246961.1| - 5.8 6.2 15.6 8.2 5.7 15.6 1.3 1 0 0 1 1 1 0 FAM76 protein Sec34 PF04136.15 gi|261402737|ref|YP_003246961.1| - 6.1 6.7 14.2 4.5 7.1 4.1 2.1 2 0 0 2 2 2 0 Sec34-like family SPACA9 PF15120.6 gi|261402737|ref|YP_003246961.1| - 7.1 6.4 10.4 9.5 6.0 1.8 2.1 2 0 0 2 2 2 0 Sperm acrosome-associated protein 9 DUF4140 PF13600.6 gi|261402737|ref|YP_003246961.1| - 7.5 7.1 17.2 2.7e+03 -1.1 17.2 2.4 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) AAA_13 PF13166.6 gi|261402737|ref|YP_003246961.1| - 7.5 5.1 17.3 47 2.4 17.6 1.8 1 1 0 1 1 1 0 AAA domain DASH_Spc19 PF08287.11 gi|261402737|ref|YP_003246961.1| - 8.4 6.3 21.1 0.15 12.0 8.4 2.2 1 1 1 2 2 2 0 Spc19 DivIVA PF05103.13 gi|261402737|ref|YP_003246961.1| - 8.4 6.5 18.3 5.2 7.2 7.0 2.3 2 0 0 2 2 2 0 DivIVA protein DUF2968 PF11180.8 gi|261402737|ref|YP_003246961.1| - 8.9 5.9 22.5 2.3 7.8 4.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) MctB PF11382.8 gi|261402737|ref|YP_003246961.1| - 9.4 5.8 8.0 1 9.0 0.8 2.0 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB Med9 PF07544.13 gi|261402737|ref|YP_003246961.1| - 9.4 6.4 22.5 6.6e+03 -2.7 22.5 3.0 1 1 0 1 1 0 0 RNA polymerase II transcription mediator complex subunit 9 DHH PF01368.20 gi|261402738|ref|YP_003246962.1| - 5.2e-15 55.5 0.3 1.1e-14 54.5 0.1 1.6 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|261402738|ref|YP_003246962.1| - 2.9e-12 47.2 0.2 1.2e-11 45.2 0.1 2.0 2 0 0 2 2 2 1 DHHA1 domain TMEM251 PF15190.6 gi|261402738|ref|YP_003246962.1| - 0.061 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Transmembrane protein 251 YpjP PF14005.6 gi|261402738|ref|YP_003246962.1| - 0.15 12.1 1.6 0.33 11.0 1.6 1.5 1 0 0 1 1 1 0 YpjP-like protein DrsE PF02635.15 gi|261402739|ref|YP_003246963.1| - 8.4e-29 100.3 0.0 9.3e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|261402739|ref|YP_003246963.1| - 0.00036 20.5 0.4 0.036 14.0 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DsrH PF04077.12 gi|261402739|ref|YP_003246963.1| - 0.0039 17.3 0.0 0.0074 16.4 0.0 1.5 1 1 0 1 1 1 1 DsrH like protein TusA PF01206.17 gi|261402740|ref|YP_003246964.1| - 2e-25 88.4 0.1 2.2e-25 88.3 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|261402740|ref|YP_003246964.1| - 5.4e-05 23.0 0.0 8.2e-05 22.4 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) UPF0180 PF03698.13 gi|261402740|ref|YP_003246964.1| - 0.021 15.0 0.0 0.035 14.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) PCC_BT PF18140.1 gi|261402740|ref|YP_003246964.1| - 0.17 12.3 0.0 0.19 12.1 0.0 1.1 1 0 0 1 1 1 0 Propionyl-coenzyme A carboxylase BT domain Radical_SAM PF04055.21 gi|261402741|ref|YP_003246965.1| - 1.8e-19 70.7 0.1 1.8e-19 70.7 0.1 2.1 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|261402741|ref|YP_003246965.1| - 2.2e-05 24.8 0.0 4.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|261402741|ref|YP_003246965.1| - 0.015 14.7 0.0 0.015 14.7 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|261402741|ref|YP_003246965.1| - 0.074 13.1 0.1 0.074 13.1 0.1 2.8 4 0 0 4 4 4 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|261402741|ref|YP_003246965.1| - 0.087 13.0 3.8 0.93 9.7 0.0 3.7 4 0 0 4 4 4 0 Zinc ribbon domain Fer4_14 PF13394.6 gi|261402741|ref|YP_003246965.1| - 0.12 12.5 2.0 0.63 10.2 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain zinc_ribbon_2 PF13240.6 gi|261402741|ref|YP_003246965.1| - 0.17 11.6 0.1 0.17 11.6 0.1 3.3 4 0 0 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|261402741|ref|YP_003246965.1| - 7.7 6.1 9.4 1.3 8.6 0.1 3.1 2 1 1 3 3 3 0 TFIIB zinc-binding DUF98 PF01947.16 gi|261402742|ref|YP_003246966.1| - 2.1e-20 73.2 0.4 3e-18 66.2 0.4 2.1 1 1 0 1 1 1 1 p-hydroxybenzoic acid synthase Peptidase_M24 PF00557.24 gi|261402743|ref|YP_003246967.1| - 2e-51 174.6 0.0 2.5e-51 174.3 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|261402743|ref|YP_003246967.1| - 7e-06 26.7 0.0 1.4e-05 25.7 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CBS PF00571.28 gi|261402744|ref|YP_003246968.1| - 4.5e-16 59.0 0.6 5.3e-08 33.2 0.0 2.2 2 0 0 2 2 2 2 CBS domain DUF1462 PF07315.11 gi|261402744|ref|YP_003246968.1| - 0.019 15.2 1.7 0.026 14.8 0.8 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1462) SH3_3 PF08239.11 gi|261402744|ref|YP_003246968.1| - 0.41 11.0 1.6 1.1 9.6 0.1 2.3 3 0 0 3 3 3 0 Bacterial SH3 domain Prismane PF03063.20 gi|261402745|ref|YP_003246969.1| - 7.4e-146 486.8 1.9 8.6e-146 486.6 1.9 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family NiFeSe_Hases PF00374.19 gi|261402746|ref|YP_003246970.1| - 1.1e-09 37.8 0.1 1.8e-08 33.8 0.0 2.6 1 1 3 4 4 4 1 Nickel-dependent hydrogenase Oxidored_q6 PF01058.22 gi|261402747|ref|YP_003246971.1| - 6.3e-19 68.1 0.2 6.3e-19 68.1 0.2 1.7 2 0 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|261402747|ref|YP_003246971.1| - 1e-08 34.6 27.1 2.5e-07 30.2 3.1 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261402747|ref|YP_003246971.1| - 3.2e-07 30.4 11.2 3.2e-07 30.4 11.2 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402747|ref|YP_003246971.1| - 3.6e-07 30.2 11.8 3.6e-07 30.2 11.8 3.4 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402747|ref|YP_003246971.1| - 3.3e-06 26.9 27.0 0.00025 21.0 3.0 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402747|ref|YP_003246971.1| - 8e-05 23.2 13.2 8e-05 23.2 13.2 3.4 3 3 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402747|ref|YP_003246971.1| - 0.0015 19.4 9.2 0.0015 19.4 9.2 3.6 3 1 1 4 4 4 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|261402747|ref|YP_003246971.1| - 0.0018 18.4 20.2 0.028 14.5 3.1 3.9 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402747|ref|YP_003246971.1| - 0.002 18.1 29.0 0.0044 17.0 5.4 4.3 3 1 1 4 4 4 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|261402747|ref|YP_003246971.1| - 0.019 15.4 3.6 0.019 15.4 3.6 4.6 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402747|ref|YP_003246971.1| - 0.023 15.1 18.1 0.18 12.3 2.1 3.3 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402747|ref|YP_003246971.1| - 0.042 14.4 2.3 0.042 14.4 2.3 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261402747|ref|YP_003246971.1| - 0.075 13.2 9.4 0.19 11.9 9.4 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261402747|ref|YP_003246971.1| - 2.3 9.1 19.8 3.4 8.6 6.1 4.0 3 1 0 3 3 3 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|261402748|ref|YP_003246972.1| - 3e-35 121.3 1.1 5e-35 120.6 1.1 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|261402748|ref|YP_003246972.1| - 1.6e-17 63.4 0.0 4.9e-17 61.8 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Adhesin_P1_N PF18652.1 gi|261402748|ref|YP_003246972.1| - 0.11 12.5 0.3 0.25 11.4 0.3 1.5 1 0 0 1 1 1 0 Adhesin P1 N-terminal domain HTH_Crp_2 PF13545.6 gi|261402748|ref|YP_003246972.1| - 0.27 11.2 0.4 0.72 9.9 0.2 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GrpE PF01025.19 gi|261402749|ref|YP_003246973.1| - 0.002 17.8 3.8 0.013 15.1 0.5 2.3 2 0 0 2 2 2 1 GrpE DUF4924 PF16271.5 gi|261402749|ref|YP_003246973.1| - 0.026 14.5 0.1 0.054 13.5 0.0 1.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4924) HhH-GPD PF00730.25 gi|261402749|ref|YP_003246973.1| - 0.097 13.1 0.0 0.23 11.9 0.0 1.7 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein Ribosomal_L12 PF00542.19 gi|261402749|ref|YP_003246973.1| - 1.8 9.0 6.1 4.1 7.8 0.0 3.4 4 0 0 4 4 4 0 Ribosomal protein L7/L12 C-terminal domain HTH_AsnC-type PF13404.6 gi|261402750|ref|YP_003246974.1| - 6.1e-17 61.2 0.3 8.4e-17 60.7 0.3 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|261402750|ref|YP_003246974.1| - 8.7e-17 60.4 0.9 1.3e-16 59.8 0.9 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|261402750|ref|YP_003246974.1| - 8.2e-13 48.1 0.0 1.4e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_28 PF13518.6 gi|261402750|ref|YP_003246974.1| - 1.8e-07 31.2 0.0 2.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|261402750|ref|YP_003246974.1| - 3.2e-07 30.2 0.2 4.8e-07 29.6 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|261402750|ref|YP_003246974.1| - 1.5e-06 28.2 0.0 2.7e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.7 gi|261402750|ref|YP_003246974.1| - 2.6e-06 27.4 0.0 4.1e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|261402750|ref|YP_003246974.1| - 5.3e-06 26.2 0.1 8.4e-06 25.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|261402750|ref|YP_003246974.1| - 2.9e-05 23.9 0.0 4.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|261402750|ref|YP_003246974.1| - 5.6e-05 22.8 0.1 8.6e-05 22.2 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.6 gi|261402750|ref|YP_003246974.1| - 0.00011 21.9 0.4 0.0002 21.1 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|261402750|ref|YP_003246974.1| - 0.00023 20.9 0.0 0.00033 20.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|261402750|ref|YP_003246974.1| - 0.00041 20.2 0.1 0.00059 19.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|261402750|ref|YP_003246974.1| - 0.00054 19.8 0.0 0.002 18.0 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|261402750|ref|YP_003246974.1| - 0.00054 19.9 0.1 0.00081 19.3 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|261402750|ref|YP_003246974.1| - 0.00067 19.4 0.1 0.0011 18.7 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HxlR PF01638.17 gi|261402750|ref|YP_003246974.1| - 0.00092 19.0 0.0 0.0016 18.2 0.0 1.5 1 1 0 1 1 1 1 HxlR-like helix-turn-helix Sigma70_r4_2 PF08281.12 gi|261402750|ref|YP_003246974.1| - 0.001 18.7 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|261402750|ref|YP_003246974.1| - 0.0012 18.9 0.0 0.0022 18.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|261402750|ref|YP_003246974.1| - 0.0021 18.0 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_34 PF13601.6 gi|261402750|ref|YP_003246974.1| - 0.0023 18.1 0.0 0.0051 17.0 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|261402750|ref|YP_003246974.1| - 0.0025 17.7 0.1 0.0032 17.3 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|261402750|ref|YP_003246974.1| - 0.0029 18.0 0.1 0.0058 17.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|261402750|ref|YP_003246974.1| - 0.0034 17.3 0.1 0.0069 16.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|261402750|ref|YP_003246974.1| - 0.0049 16.2 0.0 0.0074 15.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.27 gi|261402750|ref|YP_003246974.1| - 0.0074 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|261402750|ref|YP_003246974.1| - 0.013 15.8 0.0 0.025 14.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_47 PF16221.5 gi|261402750|ref|YP_003246974.1| - 0.017 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Sigma70_r4 PF04545.16 gi|261402750|ref|YP_003246974.1| - 0.018 14.5 0.1 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_9 PF08221.11 gi|261402750|ref|YP_003246974.1| - 0.023 14.8 0.1 0.04 14.0 0.1 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_6 PF01418.17 gi|261402750|ref|YP_003246974.1| - 0.04 13.9 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family B-block_TFIIIC PF04182.12 gi|261402750|ref|YP_003246974.1| - 0.05 13.8 0.0 0.096 12.9 0.0 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC Mga PF05043.13 gi|261402750|ref|YP_003246974.1| - 0.055 14.1 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_30 PF13556.6 gi|261402750|ref|YP_003246974.1| - 0.08 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_12 PF08461.10 gi|261402750|ref|YP_003246974.1| - 0.089 12.8 0.5 0.19 11.7 0.5 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Fer4 PF00037.27 gi|261402751|ref|YP_003246975.1| - 1.1e-13 50.3 13.4 5.1e-08 32.4 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402751|ref|YP_003246975.1| - 1.2e-09 38.7 10.3 1.2e-09 38.7 10.3 1.4 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402751|ref|YP_003246975.1| - 1.3e-09 38.1 6.8 1.8e-09 37.6 6.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402751|ref|YP_003246975.1| - 1.8e-09 37.6 21.3 5.5e-07 29.6 11.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402751|ref|YP_003246975.1| - 3.7e-09 36.3 14.3 3.1e-08 33.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402751|ref|YP_003246975.1| - 8.8e-09 35.4 11.9 1.2e-06 28.6 12.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402751|ref|YP_003246975.1| - 3e-08 34.5 9.3 0.001 19.9 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261402751|ref|YP_003246975.1| - 7.2e-08 32.1 13.0 1.3e-06 28.1 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402751|ref|YP_003246975.1| - 5.3e-06 26.8 12.7 0.00024 21.5 12.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402751|ref|YP_003246975.1| - 6.6e-06 26.2 12.5 9.8e-06 25.7 1.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261402751|ref|YP_003246975.1| - 4e-05 24.4 6.9 0.00087 20.1 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261402751|ref|YP_003246975.1| - 5.3e-05 23.9 10.7 0.0033 18.1 10.7 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|261402751|ref|YP_003246975.1| - 5.6e-05 23.6 12.2 0.0014 19.1 12.2 2.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|261402751|ref|YP_003246975.1| - 0.00039 20.9 12.9 0.066 13.8 3.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261402751|ref|YP_003246975.1| - 0.0057 17.5 3.8 0.0057 17.5 3.8 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Tau95_N PF17682.1 gi|261402751|ref|YP_003246975.1| - 0.038 14.2 0.0 0.041 14.1 0.0 1.1 1 0 0 1 1 1 0 Tau95 Triple barrel domain DUF4138 PF13595.6 gi|261402751|ref|YP_003246975.1| - 0.084 12.1 0.0 0.098 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4138) Fer4_18 PF13746.6 gi|261402751|ref|YP_003246975.1| - 0.092 12.9 9.1 0.78 10.0 2.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Aminotran_3 PF00202.21 gi|261402752|ref|YP_003246976.1| - 1.4e-126 422.5 0.0 1.7e-126 422.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|261402752|ref|YP_003246976.1| - 1.7e-08 34.0 0.0 4.8e-06 26.0 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|261402752|ref|YP_003246976.1| - 0.00058 19.2 0.0 0.0013 18.1 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|261402752|ref|YP_003246976.1| - 0.023 14.0 0.1 0.036 13.4 0.1 1.4 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Iso_dh PF00180.20 gi|261402753|ref|YP_003246977.1| - 1.1e-105 353.6 0.4 1.2e-105 353.5 0.4 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase ABC_tran PF00005.27 gi|261402754|ref|YP_003246978.1| - 4.8e-44 150.2 0.0 1.2e-21 77.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|261402754|ref|YP_003246978.1| - 4.5e-14 53.0 6.2 0.012 15.5 0.2 4.2 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|261402754|ref|YP_003246978.1| - 6e-14 51.6 4.9 1.4e-13 50.4 4.9 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|261402754|ref|YP_003246978.1| - 1.9e-12 47.1 3.9 6.8e-06 25.7 0.0 3.3 2 1 1 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.7 gi|261402754|ref|YP_003246978.1| - 5e-06 26.4 10.9 0.0015 18.5 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|261402754|ref|YP_003246978.1| - 5.7e-06 25.9 2.7 5.7e-06 25.9 2.7 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_16 PF13191.6 gi|261402754|ref|YP_003246978.1| - 1.5e-05 25.5 0.0 0.12 12.7 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_24 PF13479.6 gi|261402754|ref|YP_003246978.1| - 9.2e-05 22.2 0.4 0.055 13.2 0.0 2.6 3 0 0 3 3 2 1 AAA domain Fer4_10 PF13237.6 gi|261402754|ref|YP_003246978.1| - 0.00013 22.0 10.3 0.0051 16.9 0.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_18 PF13238.6 gi|261402754|ref|YP_003246978.1| - 0.00013 22.5 0.2 1.3 9.6 0.0 3.5 2 1 1 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|261402754|ref|YP_003246978.1| - 0.00029 20.8 0.5 0.69 9.8 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Fer4_21 PF14697.6 gi|261402754|ref|YP_003246978.1| - 0.00043 20.3 8.2 0.00071 19.7 8.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.22 gi|261402754|ref|YP_003246978.1| - 0.00048 20.5 0.1 1.6 9.1 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_23 PF13476.6 gi|261402754|ref|YP_003246978.1| - 0.00062 20.3 7.1 0.4 11.1 0.3 2.7 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|261402754|ref|YP_003246978.1| - 0.00062 20.2 0.2 0.92 9.9 0.1 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|261402754|ref|YP_003246978.1| - 0.00071 19.5 0.4 0.75 9.7 0.1 2.4 2 0 0 2 2 2 2 NACHT domain AAA_29 PF13555.6 gi|261402754|ref|YP_003246978.1| - 0.00089 19.0 0.8 0.52 10.1 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|261402754|ref|YP_003246978.1| - 0.0011 19.2 0.0 1.5 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain Fer4_7 PF12838.7 gi|261402754|ref|YP_003246978.1| - 0.002 18.7 8.4 0.0051 17.4 8.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_33 PF13671.6 gi|261402754|ref|YP_003246978.1| - 0.0026 17.9 0.0 1.2 9.2 0.0 2.8 2 2 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|261402754|ref|YP_003246978.1| - 0.0031 17.5 0.0 2.9 7.8 0.0 2.5 2 0 0 2 2 2 1 Rad17 P-loop domain Fer4_9 PF13187.6 gi|261402754|ref|YP_003246978.1| - 0.0044 17.1 9.3 0.0085 16.2 9.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain MMR_HSR1 PF01926.23 gi|261402754|ref|YP_003246978.1| - 0.0061 16.6 0.5 2 8.5 0.0 3.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|261402754|ref|YP_003246978.1| - 0.0082 16.2 3.4 3.5 7.7 0.1 3.4 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|261402754|ref|YP_003246978.1| - 0.0091 15.6 2.6 2 7.9 0.0 3.0 4 0 0 4 4 3 1 AAA domain KAP_NTPase PF07693.14 gi|261402754|ref|YP_003246978.1| - 0.015 14.6 0.0 0.32 10.2 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain DUF87 PF01935.17 gi|261402754|ref|YP_003246978.1| - 0.027 14.6 2.4 6.7 6.7 0.0 3.5 4 0 0 4 4 3 0 Helicase HerA, central domain Fer4_16 PF13484.6 gi|261402754|ref|YP_003246978.1| - 0.032 15.2 6.3 0.041 14.8 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain NTPase_1 PF03266.15 gi|261402754|ref|YP_003246978.1| - 0.036 14.0 1.6 1.2 9.0 0.2 2.9 2 0 0 2 2 2 0 NTPase Lactococcin PF04369.13 gi|261402754|ref|YP_003246978.1| - 0.053 13.7 0.0 0.27 11.4 0.0 2.1 2 0 0 2 2 2 0 Lactococcin-like family AAA_5 PF07728.14 gi|261402754|ref|YP_003246978.1| - 0.053 13.5 1.0 4.1 7.4 0.1 3.0 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|261402754|ref|YP_003246978.1| - 0.056 13.7 0.0 7.3 6.8 0.1 2.6 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|261402754|ref|YP_003246978.1| - 0.063 13.0 9.9 2.7 7.6 0.1 3.7 3 2 1 4 4 3 0 AAA ATPase domain PRK PF00485.18 gi|261402754|ref|YP_003246978.1| - 0.074 12.8 0.0 5.9 6.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family SRP54 PF00448.22 gi|261402754|ref|YP_003246978.1| - 0.091 12.4 0.9 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|261402754|ref|YP_003246978.1| - 0.12 12.0 0.7 7.7 6.2 0.2 2.5 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|261402754|ref|YP_003246978.1| - 0.21 11.6 0.3 3.3 7.7 0.2 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|261402754|ref|YP_003246978.1| - 0.25 10.5 2.0 17 4.5 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain MeaB PF03308.16 gi|261402754|ref|YP_003246978.1| - 0.35 9.8 3.1 2.7 6.9 0.2 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_19 PF13245.6 gi|261402754|ref|YP_003246978.1| - 0.6 10.4 1.7 40 4.5 0.3 2.6 2 0 0 2 2 2 0 AAA domain Fer4_2 PF12797.7 gi|261402754|ref|YP_003246978.1| - 0.64 10.2 10.4 0.1 12.8 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ABC_ATPase PF09818.9 gi|261402754|ref|YP_003246978.1| - 1.5 7.5 4.4 6.3 5.5 0.1 2.6 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Fer4_3 PF12798.7 gi|261402754|ref|YP_003246978.1| - 7.7 7.7 16.3 0.73 10.9 4.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain SDH_alpha PF03313.15 gi|261402755|ref|YP_003246979.1| - 2.9e-29 102.6 0.3 6.2e-29 101.5 0.0 1.6 1 1 1 2 2 2 1 Serine dehydratase alpha chain SBDS PF01172.18 gi|261402755|ref|YP_003246979.1| - 6 7.0 9.8 0.29 11.2 1.3 3.2 4 1 0 4 4 4 0 Shwachman-Bodian-Diamond syndrome (SBDS) protein ThiC_Rad_SAM PF01964.18 gi|261402756|ref|YP_003246980.1| - 1.4e-196 653.3 1.1 1.5e-196 653.2 1.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family tRNA_int_endo PF01974.17 gi|261402756|ref|YP_003246980.1| - 0.13 12.3 0.0 7.3 6.7 0.0 2.9 2 1 0 2 2 2 0 tRNA intron endonuclease, catalytic C-terminal domain Complex1_49kDa PF00346.19 gi|261402757|ref|YP_003246981.1| - 1.3e-47 162.2 0.0 4.6e-37 127.6 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|261402757|ref|YP_003246981.1| - 8.1e-15 54.7 4.5 2.3e-14 53.2 0.2 2.7 2 1 1 3 3 3 1 Nickel-dependent hydrogenase G-7-MTase PF12803.7 gi|261402757|ref|YP_003246981.1| - 0.12 11.5 0.0 0.43 9.7 0.0 1.9 2 0 0 2 2 2 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) Sortase PF04203.13 gi|261402757|ref|YP_003246981.1| - 0.19 11.5 0.1 0.37 10.6 0.1 1.5 1 0 0 1 1 1 0 Sortase domain Amidohydro_1 PF01979.20 gi|261402758|ref|YP_003246982.1| - 1.6e-40 139.5 0.0 2.1e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|261402758|ref|YP_003246982.1| - 0.024 14.1 0.0 3 7.2 0.0 2.5 3 0 0 3 3 3 0 Amidohydrolase family DUF1574 PF07611.11 gi|261402758|ref|YP_003246982.1| - 0.19 11.1 3.1 7.6 5.8 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1574) MS_channel PF00924.18 gi|261402759|ref|YP_003246983.1| - 3.3e-41 141.1 6.4 3.3e-41 141.1 6.4 1.8 2 1 0 2 2 2 1 Mechanosensitive ion channel DUF2976 PF11190.8 gi|261402759|ref|YP_003246983.1| - 0.00077 19.2 4.7 0.0024 17.7 4.7 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2976) GWT1 PF06423.12 gi|261402759|ref|YP_003246983.1| - 0.2 11.8 7.8 0.2 11.8 0.1 2.7 2 1 0 2 2 2 0 GWT1 PMT_4TMC PF16192.5 gi|261402759|ref|YP_003246983.1| - 2.9 7.4 8.0 0.91 9.1 4.4 1.8 1 1 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase DNA_primase_lrg PF04104.14 gi|261402760|ref|YP_003246984.1| - 7.3e-27 94.4 1.0 1.5e-26 93.4 0.1 1.9 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase, large subunit Vac14_Fab1_bd PF12755.7 gi|261402760|ref|YP_003246984.1| - 1.1e-05 26.0 0.7 0.0019 18.7 0.0 3.2 3 0 0 3 3 3 1 Vacuolar 14 Fab1-binding region ATG101 PF07855.12 gi|261402760|ref|YP_003246984.1| - 0.074 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Autophagy-related protein 101 Metallophos PF00149.28 gi|261402761|ref|YP_003246985.1| - 7.2e-11 43.0 8.2 1.1e-10 42.4 1.0 2.3 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.16 gi|261402761|ref|YP_003246985.1| - 4.4e-10 39.3 0.0 9.9e-10 38.1 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|261402761|ref|YP_003246985.1| - 8.8e-06 26.0 0.5 2.9e-05 24.3 0.0 2.1 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain tRNA_anti-codon PF01336.25 gi|261402761|ref|YP_003246985.1| - 0.0047 16.9 1.7 0.01 15.8 1.7 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CRR7 PF12095.8 gi|261402761|ref|YP_003246985.1| - 0.15 12.5 4.3 0.27 11.7 0.6 2.7 2 1 0 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 GAGA_bind PF06217.12 gi|261402761|ref|YP_003246985.1| - 1.3 9.3 7.5 2 8.6 7.5 1.2 1 0 0 1 1 1 0 GAGA binding protein-like family Lon_C PF05362.13 gi|261402762|ref|YP_003246986.1| - 4.5e-12 45.9 1.0 8e-12 45.1 1.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|261402762|ref|YP_003246986.1| - 0.0011 18.8 0.1 0.013 15.4 0.0 2.3 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase UPF0154 PF03672.13 gi|261402762|ref|YP_003246986.1| - 0.95 9.5 3.4 4.4 7.4 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) XPG_I PF00867.18 gi|261402763|ref|YP_003246987.1| - 2.6e-28 98.2 0.5 1.4e-27 95.8 0.0 2.2 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|261402763|ref|YP_003246987.1| - 3.2e-18 66.1 0.0 6e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain DUF1002 PF06207.11 gi|261402763|ref|YP_003246987.1| - 0.015 14.9 0.7 0.024 14.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) 5_3_exonuc PF01367.20 gi|261402763|ref|YP_003246987.1| - 0.11 13.1 2.8 0.17 12.5 0.1 2.5 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold PMBR PF09373.10 gi|261402763|ref|YP_003246987.1| - 0.52 10.6 2.2 57 4.1 0.2 3.4 3 0 0 3 3 3 0 Pseudomurein-binding repeat Metallophos PF00149.28 gi|261402764|ref|YP_003246988.1| - 2.2e-10 41.4 2.0 2.7e-10 41.1 2.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|261402764|ref|YP_003246988.1| - 1.3e-08 35.2 0.1 1.9e-08 34.7 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TraB PF01963.17 gi|261402765|ref|YP_003246989.1| - 4.3e-29 102.2 0.0 7.1e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 TraB family YukC PF10140.9 gi|261402765|ref|YP_003246989.1| - 3.5e-05 22.8 0.5 5.3e-05 22.2 0.5 1.2 1 0 0 1 1 1 1 WXG100 protein secretion system (Wss), protein YukC PucR PF07905.11 gi|261402765|ref|YP_003246989.1| - 0.061 13.6 0.0 0.99 9.7 0.0 2.6 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family IlvN PF07991.12 gi|261402766|ref|YP_003246990.1| - 2.7e-75 251.5 0.5 3.8e-75 251.0 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|261402766|ref|YP_003246990.1| - 1.1e-64 217.1 1.0 1.7e-64 216.5 1.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|261402766|ref|YP_003246990.1| - 4.2e-07 30.5 0.0 9.2e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|261402766|ref|YP_003246990.1| - 1.9e-06 27.3 0.0 3.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|261402766|ref|YP_003246990.1| - 5.5e-06 26.6 0.0 1.3e-05 25.4 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|261402766|ref|YP_003246990.1| - 0.00033 20.8 0.1 0.00082 19.5 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CoA_binding PF02629.19 gi|261402766|ref|YP_003246990.1| - 0.021 15.5 0.1 0.057 14.1 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain YfaZ PF07437.11 gi|261402766|ref|YP_003246990.1| - 0.063 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 YfaZ precursor NAD_Gly3P_dh_N PF01210.23 gi|261402766|ref|YP_003246990.1| - 0.1 12.6 1.0 17 5.3 0.1 3.0 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|261402766|ref|YP_003246990.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AAA_15 PF13175.6 gi|261402767|ref|YP_003246991.1| - 1e-16 61.6 50.5 1.8e-12 47.6 27.7 3.0 2 1 1 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|261402767|ref|YP_003246991.1| - 8e-11 42.3 10.2 6.5e-06 26.2 0.2 3.3 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|261402767|ref|YP_003246991.1| - 3.9e-05 24.2 7.2 3.9e-05 24.2 7.2 3.6 2 2 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|261402767|ref|YP_003246991.1| - 0.00042 20.8 0.2 0.0018 18.8 0.3 2.1 2 1 0 2 2 2 1 ABC transporter HTH_1 PF00126.27 gi|261402767|ref|YP_003246991.1| - 0.028 14.3 0.0 0.15 12.0 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family AAA_27 PF13514.6 gi|261402767|ref|YP_003246991.1| - 0.041 13.5 0.1 0.089 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|261402767|ref|YP_003246991.1| - 0.08 12.4 3.8 0.027 13.9 0.9 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain UPF0180 PF03698.13 gi|261402767|ref|YP_003246991.1| - 0.11 12.7 0.6 1.2 9.3 0.0 2.8 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) AAA_18 PF13238.6 gi|261402767|ref|YP_003246991.1| - 0.13 12.9 0.7 1.6 9.3 0.5 3.0 2 1 0 2 2 2 0 AAA domain Amidohydro_1 PF01979.20 gi|261402768|ref|YP_003246992.1| - 4.4e-86 289.3 0.1 5.2e-86 289.1 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|261402768|ref|YP_003246992.1| - 3.8e-15 56.3 0.0 7.2e-13 48.8 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|261402768|ref|YP_003246992.1| - 0.0014 18.0 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 TatD related DNase NPV_P10 PF05531.12 gi|261402770|ref|YP_003246994.1| - 0.0071 16.8 1.7 0.55 10.7 1.7 2.1 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|261402770|ref|YP_003246994.1| - 0.012 15.9 2.1 0.017 15.4 2.1 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|261402770|ref|YP_003246994.1| - 0.054 13.5 0.1 0.072 13.1 0.1 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus EC042_2821 PF18740.1 gi|261402770|ref|YP_003246994.1| - 0.13 12.2 4.1 0.56 10.1 0.8 2.1 1 1 0 2 2 2 0 EC042_2821-lke REase DUF4559 PF15112.6 gi|261402770|ref|YP_003246994.1| - 0.18 11.5 3.2 0.2 11.3 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Pro_dh PF01619.18 gi|261402770|ref|YP_003246994.1| - 0.19 11.2 0.3 0.19 11.2 0.3 1.1 1 0 0 1 1 1 0 Proline dehydrogenase TRPM_tetra PF16519.5 gi|261402770|ref|YP_003246994.1| - 0.29 11.3 4.0 0.43 10.7 1.2 2.2 1 1 2 3 3 3 0 Tetramerisation domain of TRPM CCDC14 PF15254.6 gi|261402770|ref|YP_003246994.1| - 0.34 9.5 5.8 2.7 6.5 5.8 1.9 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 14 KTI12 PF08433.10 gi|261402771|ref|YP_003246995.1| - 8.7e-50 169.7 6.7 9.5e-50 169.6 2.4 1.9 1 1 1 2 2 2 1 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|261402771|ref|YP_003246995.1| - 6.9e-15 55.5 0.0 1.6e-14 54.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|261402771|ref|YP_003246995.1| - 1.7e-10 41.5 1.8 2.8e-10 40.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|261402771|ref|YP_003246995.1| - 3.6e-06 26.9 0.0 1.4e-05 25.1 0.0 1.9 1 1 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.6 gi|261402771|ref|YP_003246995.1| - 0.00013 22.4 3.1 0.0018 18.7 0.0 3.2 2 2 0 2 2 2 1 AAA domain 6PF2K PF01591.18 gi|261402771|ref|YP_003246995.1| - 0.00016 21.0 6.3 0.00025 20.4 0.0 2.9 2 1 1 3 3 3 1 6-phosphofructo-2-kinase Zeta_toxin PF06414.12 gi|261402771|ref|YP_003246995.1| - 0.00056 19.2 0.0 0.0011 18.3 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin SKI PF01202.22 gi|261402771|ref|YP_003246995.1| - 0.00082 19.5 0.3 0.0032 17.6 0.3 2.0 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.17 gi|261402771|ref|YP_003246995.1| - 0.00098 18.8 3.6 0.15 11.7 0.3 2.8 2 1 0 2 2 2 2 Thymidylate kinase ParA PF10609.9 gi|261402771|ref|YP_003246995.1| - 0.0024 17.4 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_14 PF13173.6 gi|261402771|ref|YP_003246995.1| - 0.0024 17.9 0.2 0.0024 17.9 0.2 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|261402771|ref|YP_003246995.1| - 0.0028 17.6 2.0 0.0051 16.7 0.0 2.2 2 1 0 2 2 2 1 NTPase CbiA PF01656.23 gi|261402771|ref|YP_003246995.1| - 0.0046 17.0 0.0 0.0074 16.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|261402771|ref|YP_003246995.1| - 0.0084 15.1 0.4 0.017 14.1 0.0 1.7 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|261402771|ref|YP_003246995.1| - 0.0086 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain CPT PF07931.12 gi|261402771|ref|YP_003246995.1| - 0.009 15.9 0.0 0.22 11.4 0.0 2.2 1 1 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein DnaB_C PF03796.15 gi|261402771|ref|YP_003246995.1| - 0.0092 15.3 0.4 0.054 12.8 0.0 2.1 1 1 0 2 2 2 1 DnaB-like helicase C terminal domain AAA PF00004.29 gi|261402771|ref|YP_003246995.1| - 0.01 16.3 0.2 0.06 13.8 0.0 2.2 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|261402771|ref|YP_003246995.1| - 0.017 15.4 0.1 0.042 14.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF243 PF03103.17 gi|261402771|ref|YP_003246995.1| - 0.019 15.2 0.9 0.044 14.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF243) RNA_helicase PF00910.22 gi|261402771|ref|YP_003246995.1| - 0.084 13.3 0.1 0.19 12.1 0.1 1.7 1 1 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|261402771|ref|YP_003246995.1| - 0.097 12.8 5.2 0.31 11.1 0.1 3.1 2 2 1 3 3 3 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|261402771|ref|YP_003246995.1| - 0.1 12.3 0.1 0.47 10.2 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|261402771|ref|YP_003246995.1| - 0.12 12.3 0.1 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) dNK PF01712.19 gi|261402771|ref|YP_003246995.1| - 0.13 12.1 8.5 0.17 11.7 2.4 2.7 1 1 0 2 2 2 0 Deoxynucleoside kinase Ribosomal_L17 PF01196.19 gi|261402771|ref|YP_003246995.1| - 0.16 12.9 3.9 0.23 12.4 1.9 2.0 2 0 0 2 2 2 0 Ribosomal protein L17 DHHA1 PF02272.19 gi|261402773|ref|YP_003246997.1| - 5.5e-16 59.2 0.2 3.2e-15 56.7 0.0 2.1 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|261402773|ref|YP_003246997.1| - 0.00019 21.6 0.0 0.00034 20.8 0.0 1.4 1 0 0 1 1 1 1 DHH family Rubrerythrin PF02915.17 gi|261402773|ref|YP_003246997.1| - 0.056 13.8 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Rubrerythrin SRP54 PF00448.22 gi|261402774|ref|YP_003246998.1| - 2.1e-78 262.5 3.8 4.5e-78 261.4 3.8 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|261402774|ref|YP_003246998.1| - 4.6e-13 49.2 8.9 4.6e-13 49.2 8.9 4.0 3 2 1 4 4 2 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|261402774|ref|YP_003246998.1| - 2.4e-07 30.7 2.8 4.3e-07 29.8 2.8 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|261402774|ref|YP_003246998.1| - 4.7e-07 29.3 0.6 4.7e-07 29.3 0.6 2.2 2 0 0 2 2 2 1 Zeta toxin AAA_17 PF13207.6 gi|261402774|ref|YP_003246998.1| - 1.5e-06 28.7 0.5 1.5e-06 28.7 0.5 2.8 2 1 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.17 gi|261402774|ref|YP_003246998.1| - 3.7e-06 26.7 5.7 2.6e-05 24.0 0.5 3.0 2 1 0 2 2 2 1 Thymidylate kinase AAA_33 PF13671.6 gi|261402774|ref|YP_003246998.1| - 4.5e-06 26.9 0.2 1.3e-05 25.4 0.1 1.8 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|261402774|ref|YP_003246998.1| - 6.5e-06 26.5 0.4 0.00014 22.2 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|261402774|ref|YP_003246998.1| - 2.5e-05 24.6 0.1 7.1e-05 23.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain APS_kinase PF01583.20 gi|261402774|ref|YP_003246998.1| - 2.6e-05 24.1 0.0 5.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase MeaB PF03308.16 gi|261402774|ref|YP_003246998.1| - 4.4e-05 22.6 1.9 4.4e-05 22.6 1.9 2.1 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2075 PF09848.9 gi|261402774|ref|YP_003246998.1| - 6.7e-05 22.3 1.0 6.7e-05 22.3 1.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) YjeF_N PF03853.15 gi|261402774|ref|YP_003246998.1| - 0.00012 22.0 2.7 0.11 12.3 1.5 2.4 1 1 1 2 2 2 2 YjeF-related protein N-terminus AAA_16 PF13191.6 gi|261402774|ref|YP_003246998.1| - 0.00015 22.2 1.0 0.00067 20.1 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain CbiA PF01656.23 gi|261402774|ref|YP_003246998.1| - 0.00019 21.5 10.4 0.00053 20.1 4.3 3.2 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|261402774|ref|YP_003246998.1| - 0.00074 19.6 3.4 0.00074 19.6 3.4 2.4 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit cobW PF02492.19 gi|261402774|ref|YP_003246998.1| - 0.0017 18.0 1.7 0.0017 18.0 1.7 1.9 2 0 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain PPK2 PF03976.14 gi|261402774|ref|YP_003246998.1| - 0.0025 17.3 0.3 0.011 15.2 0.2 2.1 1 1 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) VirC1 PF07015.11 gi|261402774|ref|YP_003246998.1| - 0.0026 17.1 0.0 0.0046 16.3 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein ABC_tran PF00005.27 gi|261402774|ref|YP_003246998.1| - 0.0033 17.9 3.5 0.015 15.8 0.1 2.3 2 0 0 2 2 2 1 ABC transporter MobB PF03205.14 gi|261402774|ref|YP_003246998.1| - 0.0048 16.8 0.4 0.0048 16.8 0.4 2.8 2 1 1 3 3 2 1 Molybdopterin guanine dinucleotide synthesis protein B Peripla_BP_6 PF13458.6 gi|261402774|ref|YP_003246998.1| - 0.0073 16.0 0.2 0.011 15.4 0.2 1.4 1 0 0 1 1 1 1 Periplasmic binding protein AAA_7 PF12775.7 gi|261402774|ref|YP_003246998.1| - 0.011 15.2 0.1 0.022 14.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Fe-ADH PF00465.19 gi|261402774|ref|YP_003246998.1| - 0.011 14.5 8.4 0.029 13.2 0.7 2.7 3 0 0 3 3 3 0 Iron-containing alcohol dehydrogenase AAA PF00004.29 gi|261402774|ref|YP_003246998.1| - 0.017 15.6 0.6 0.017 15.6 0.6 3.1 1 1 2 3 3 3 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|261402774|ref|YP_003246998.1| - 0.018 15.1 8.8 0.022 14.8 1.6 3.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase 6PF2K PF01591.18 gi|261402774|ref|YP_003246998.1| - 0.019 14.3 0.3 0.019 14.3 0.3 1.9 2 1 0 2 2 2 0 6-phosphofructo-2-kinase AAA_31 PF13614.6 gi|261402774|ref|YP_003246998.1| - 0.021 14.7 1.0 0.021 14.7 1.0 2.8 1 1 1 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|261402774|ref|YP_003246998.1| - 0.027 14.5 4.5 0.034 14.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain LpxK PF02606.14 gi|261402774|ref|YP_003246998.1| - 0.045 12.9 1.9 0.18 10.8 0.3 2.2 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.10 gi|261402774|ref|YP_003246998.1| - 0.056 12.9 0.1 0.056 12.9 0.1 3.0 2 2 0 2 2 1 0 Chromatin associated protein KTI12 Glyco_trans_4_5 PF16994.5 gi|261402774|ref|YP_003246998.1| - 0.059 13.0 0.1 0.059 13.0 0.1 2.2 2 1 0 2 2 2 0 Glycosyl-transferase family 4 Metallophos PF00149.28 gi|261402774|ref|YP_003246998.1| - 0.061 13.8 0.0 0.79 10.2 0.0 2.3 2 0 0 2 2 2 0 Calcineurin-like phosphoesterase LytR_C PF13399.6 gi|261402774|ref|YP_003246998.1| - 0.068 14.2 3.7 0.45 11.5 3.4 2.6 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator AAA_23 PF13476.6 gi|261402774|ref|YP_003246998.1| - 0.076 13.5 0.2 0.076 13.5 0.2 2.7 1 1 1 2 2 1 0 AAA domain NACHT PF05729.12 gi|261402774|ref|YP_003246998.1| - 0.079 12.9 0.2 0.17 11.8 0.2 1.5 1 0 0 1 1 1 0 NACHT domain Ribosomal_L14e PF01929.17 gi|261402774|ref|YP_003246998.1| - 0.11 13.0 2.3 0.37 11.3 2.3 2.0 1 0 0 1 1 1 0 Ribosomal protein L14 DUF2855 PF11017.8 gi|261402774|ref|YP_003246998.1| - 0.12 12.1 0.3 0.38 10.5 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2855) ORC3_N PF07034.11 gi|261402774|ref|YP_003246998.1| - 0.22 10.6 4.3 0.73 8.9 0.0 2.2 2 0 0 2 2 2 0 Origin recognition complex (ORC) subunit 3 N-terminus CBP_BcsQ PF06564.12 gi|261402774|ref|YP_003246998.1| - 0.27 10.7 0.6 0.73 9.3 0.1 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ DUF815 PF05673.13 gi|261402774|ref|YP_003246998.1| - 0.4 9.8 8.2 2 7.5 1.7 2.6 2 1 0 3 3 3 0 Protein of unknown function (DUF815) RsgA_GTPase PF03193.16 gi|261402774|ref|YP_003246998.1| - 0.6 10.0 7.0 0.29 11.0 1.0 3.2 1 1 3 4 4 4 0 RsgA GTPase AAA_5 PF07728.14 gi|261402774|ref|YP_003246998.1| - 0.62 10.1 3.7 1.2 9.1 0.0 2.8 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) Efg1 PF10153.9 gi|261402774|ref|YP_003246998.1| - 0.67 10.3 9.7 1.6 9.1 9.7 1.8 1 1 0 1 1 1 0 rRNA-processing protein Efg1 AAA_26 PF13500.6 gi|261402774|ref|YP_003246998.1| - 0.81 9.5 8.0 3 7.6 2.9 3.2 1 1 1 2 2 2 0 AAA domain PIG-L PF02585.17 gi|261402774|ref|YP_003246998.1| - 0.84 10.3 5.5 0.35 11.5 0.4 2.4 2 2 0 2 2 2 0 GlcNAc-PI de-N-acetylase Bindin PF02084.15 gi|261402774|ref|YP_003246998.1| - 1.3 9.2 4.2 2.1 8.6 0.2 2.4 2 0 0 2 2 2 0 Bindin AAA_19 PF13245.6 gi|261402774|ref|YP_003246998.1| - 1.8 8.9 7.9 0.33 11.3 1.8 2.3 2 1 0 2 2 2 0 AAA domain DUF5063 PF16702.5 gi|261402774|ref|YP_003246998.1| - 2 8.8 5.0 15 5.9 0.1 2.8 1 1 1 3 3 3 0 Domain of unknown function (DUF5063) PTPlike_phytase PF14566.6 gi|261402774|ref|YP_003246998.1| - 2.2 8.4 12.9 1.4e+02 2.5 12.9 3.2 1 1 0 1 1 1 0 Inositol hexakisphosphate ZnuA PF01297.17 gi|261402774|ref|YP_003246998.1| - 4.6 6.6 7.3 1.2e+02 1.9 7.2 2.9 1 1 0 1 1 1 0 Zinc-uptake complex component A periplasmic SPOUT_MTase PF02590.17 gi|261402774|ref|YP_003246998.1| - 6.1 6.8 9.3 1.2 9.1 0.0 3.0 2 1 1 3 3 3 0 Predicted SPOUT methyltransferase HTH_45 PF14947.6 gi|261402775|ref|YP_003246999.1| - 3.9e-25 87.6 6.6 1.2e-24 86.0 6.6 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix Cnd1 PF12717.7 gi|261402775|ref|YP_003246999.1| - 0.00076 19.6 2.8 0.001 19.2 2.0 1.6 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 Mrr_N PF14338.6 gi|261402775|ref|YP_003246999.1| - 0.0042 17.2 0.1 0.0095 16.0 0.1 1.7 1 0 0 1 1 1 1 Mrr N-terminal domain Transposase_22 PF02994.14 gi|261402775|ref|YP_003246999.1| - 0.089 13.0 1.2 0.21 11.8 0.4 2.1 2 1 0 2 2 2 0 L1 transposable element RBD-like domain HTH_45 PF14947.6 gi|261402778|ref|YP_003247002.1| - 2.1e-25 88.5 0.4 2.4e-25 88.3 0.4 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|261402778|ref|YP_003247002.1| - 0.0097 16.4 0.0 0.013 16.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|261402778|ref|YP_003247002.1| - 0.11 10.9 0.0 0.12 10.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) ArsA_HSP20 PF17886.1 gi|261402780|ref|YP_003247004.1| - 3.6e-12 45.6 0.0 5.5e-12 45.1 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|261402780|ref|YP_003247004.1| - 2.5e-11 43.6 0.1 3.1e-11 43.3 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Semialdhyde_dh PF01118.24 gi|261402781|ref|YP_003247005.1| - 2e-36 125.1 0.0 3.1e-36 124.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|261402781|ref|YP_003247005.1| - 2.6e-26 92.8 0.0 3.6e-26 92.4 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Sacchrp_dh_NADP PF03435.18 gi|261402781|ref|YP_003247005.1| - 0.0011 19.3 0.0 0.0029 17.9 0.0 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|261402781|ref|YP_003247005.1| - 0.0011 19.8 0.0 0.0017 19.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|261402781|ref|YP_003247005.1| - 0.0051 16.9 0.1 0.0098 16.0 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.6 gi|261402781|ref|YP_003247005.1| - 0.017 15.6 0.0 0.046 14.2 0.0 1.8 2 0 0 2 2 2 0 CoA binding domain NAD_binding_3 PF03447.16 gi|261402781|ref|YP_003247005.1| - 0.032 14.9 0.0 0.056 14.1 0.0 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|261402781|ref|YP_003247005.1| - 0.039 13.4 0.1 0.1 12.0 0.1 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family DUF2098 PF09871.9 gi|261402782|ref|YP_003247006.1| - 1.4e-21 76.6 0.3 1.5e-21 76.5 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2098) SH3_12 PF18129.1 gi|261402782|ref|YP_003247006.1| - 0.049 13.7 0.8 0.067 13.3 0.8 1.3 1 0 0 1 1 1 0 Xrn1 SH3-like domain Reg_prop PF07494.11 gi|261402782|ref|YP_003247006.1| - 0.087 13.1 0.1 0.17 12.2 0.1 1.5 1 0 0 1 1 1 0 Two component regulator propeller MTS PF05175.14 gi|261402782|ref|YP_003247006.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain HAS-barrel PF09378.10 gi|261402782|ref|YP_003247006.1| - 0.19 11.9 4.2 0.4 10.9 4.2 1.7 1 1 0 1 1 1 0 HAS barrel domain CarD_CdnL_TRCF PF02559.16 gi|261402782|ref|YP_003247006.1| - 0.33 11.7 2.8 0.63 10.8 2.8 1.6 1 1 0 1 1 1 0 CarD-like/TRCF domain TrkH PF02386.16 gi|261402783|ref|YP_003247007.1| - 6.2e-48 163.5 31.3 8.6e-26 90.4 13.1 2.1 1 1 1 2 2 2 2 Cation transport protein PrmA PF06325.13 gi|261402784|ref|YP_003247008.1| - 4.6e-13 49.2 0.1 6.6e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|261402784|ref|YP_003247008.1| - 1.1e-12 48.1 0.1 1.4e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|261402784|ref|YP_003247008.1| - 1.9e-11 43.8 0.0 3.5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|261402784|ref|YP_003247008.1| - 1.9e-10 41.3 0.0 2.9e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|261402784|ref|YP_003247008.1| - 6.2e-07 30.0 0.0 1e-06 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|261402784|ref|YP_003247008.1| - 7.7e-07 28.9 0.0 1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|261402784|ref|YP_003247008.1| - 6.2e-06 25.9 0.1 1.1e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|261402784|ref|YP_003247008.1| - 3.4e-05 23.6 0.4 0.0001 22.0 0.4 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|261402784|ref|YP_003247008.1| - 0.0001 22.4 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|261402784|ref|YP_003247008.1| - 0.00023 20.7 0.1 0.00037 20.0 0.1 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_23 PF13489.6 gi|261402784|ref|YP_003247008.1| - 0.00026 20.9 0.0 0.00033 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|261402784|ref|YP_003247008.1| - 0.00037 20.1 0.1 0.00068 19.2 0.1 1.3 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_10 PF05971.12 gi|261402784|ref|YP_003247008.1| - 0.0006 19.2 0.0 0.00075 18.9 0.0 1.1 1 0 0 1 1 1 1 RNA methyltransferase Methyltransf_12 PF08242.12 gi|261402784|ref|YP_003247008.1| - 0.0031 18.2 0.2 0.0064 17.2 0.2 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|261402784|ref|YP_003247008.1| - 0.0059 16.0 0.1 0.01 15.2 0.1 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|261402784|ref|YP_003247008.1| - 0.0061 16.5 0.1 0.01 15.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|261402784|ref|YP_003247008.1| - 0.012 15.1 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 MraW methylase family CMAS PF02353.20 gi|261402784|ref|YP_003247008.1| - 0.031 13.6 0.0 0.058 12.7 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Peptidase_S24 PF00717.23 gi|261402784|ref|YP_003247008.1| - 0.038 14.0 0.1 0.038 14.0 0.1 2.7 3 1 0 3 3 3 0 Peptidase S24-like ROS_MUCR PF05443.11 gi|261402784|ref|YP_003247008.1| - 0.043 13.8 0.1 0.068 13.2 0.1 1.4 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein PCMT PF01135.19 gi|261402784|ref|YP_003247008.1| - 0.063 13.0 0.2 0.13 12.0 0.1 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HipN PF18253.1 gi|261402784|ref|YP_003247008.1| - 0.11 12.2 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Hsp70-interacting protein N N-terminal domain DUF2830 PF11125.8 gi|261402785|ref|YP_003247009.1| - 0.1 12.6 1.7 0.1 12.6 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2830) DUF4131 PF13567.6 gi|261402785|ref|YP_003247009.1| - 0.17 11.5 9.2 0.089 12.4 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) TrbC PF04956.13 gi|261402785|ref|YP_003247009.1| - 0.52 10.6 10.1 0.048 13.9 3.9 1.9 2 0 0 2 2 2 0 TrbC/VIRB2 family Cation_ATPase_C PF00689.21 gi|261402785|ref|YP_003247009.1| - 0.56 9.9 14.2 0.72 9.5 14.2 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF1129 PF06570.11 gi|261402785|ref|YP_003247009.1| - 1.4 8.4 12.4 0.73 9.3 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) O-antigen_lig PF13425.6 gi|261402786|ref|YP_003247010.1| - 0.38 9.5 27.1 0.5 9.1 27.1 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Aminotran_1_2 PF00155.21 gi|261402787|ref|YP_003247011.1| - 1.9e-68 231.3 0.0 2.2e-68 231.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|261402787|ref|YP_003247011.1| - 1.9e-09 36.6 0.0 2.8e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|261402787|ref|YP_003247011.1| - 2.1e-09 36.8 0.0 2.7e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|261402787|ref|YP_003247011.1| - 8.9e-07 28.5 0.0 1.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|261402787|ref|YP_003247011.1| - 1.7e-05 24.3 0.0 3.3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_MocR PF12897.7 gi|261402787|ref|YP_003247011.1| - 0.039 12.7 0.0 0.072 11.9 0.0 1.6 1 1 0 1 1 1 0 Alanine-glyoxylate amino-transferase DUF1246 PF06849.12 gi|261402787|ref|YP_003247011.1| - 0.072 13.1 1.0 0.79 9.7 0.0 3.0 3 1 1 4 4 4 0 Protein of unknown function (DUF1246) UPF0179 PF03684.13 gi|261402788|ref|YP_003247012.1| - 3.6e-50 169.5 5.9 4.3e-50 169.2 5.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DUF1410 PF07198.11 gi|261402788|ref|YP_003247012.1| - 0.032 14.7 0.1 7.7 7.1 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1410) ABC_ATPase PF09818.9 gi|261402789|ref|YP_003247013.1| - 2e-96 323.6 0.0 2.3e-96 323.3 0.0 1.0 1 0 0 1 1 1 1 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|261402789|ref|YP_003247013.1| - 4.8e-05 23.9 0.3 0.01 16.4 0.1 2.5 1 1 1 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|261402789|ref|YP_003247013.1| - 0.00067 19.6 0.1 0.0016 18.3 0.1 1.7 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|261402789|ref|YP_003247013.1| - 0.00074 20.1 0.1 0.00074 20.1 0.1 3.1 2 1 0 2 2 2 1 AAA domain EutA PF06277.11 gi|261402789|ref|YP_003247013.1| - 0.0021 17.0 0.1 0.0078 15.1 0.0 1.8 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA AAA_22 PF13401.6 gi|261402789|ref|YP_003247013.1| - 0.0068 16.7 0.1 0.021 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|261402789|ref|YP_003247013.1| - 0.014 15.1 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|261402789|ref|YP_003247013.1| - 0.045 13.8 0.1 8.7 6.4 0.0 3.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|261402789|ref|YP_003247013.1| - 0.064 13.0 0.1 0.064 13.0 0.1 2.5 2 1 0 2 2 2 0 AAA ATPase domain HD PF01966.22 gi|261402790|ref|YP_003247014.1| - 3.3e-17 62.8 1.6 6.4e-17 61.9 0.1 2.3 3 0 0 3 3 3 1 HD domain HDOD PF08668.12 gi|261402790|ref|YP_003247014.1| - 0.00047 19.7 0.0 0.00099 18.6 0.0 1.5 1 0 0 1 1 1 1 HDOD domain DUF2100 PF09873.9 gi|261402790|ref|YP_003247014.1| - 0.0023 17.8 1.9 2 8.3 0.8 3.2 3 0 0 3 3 3 2 Uncharacterized protein conserved in archaea (DUF2100) IF2_N PF04760.15 gi|261402790|ref|YP_003247014.1| - 0.013 15.3 0.6 7.9 6.4 0.0 3.2 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Cellulase PF00150.18 gi|261402791|ref|YP_003247015.1| - 2.1e-14 53.6 1.5 2.4e-14 53.5 0.3 1.6 1 1 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) GAPT PF11770.8 gi|261402791|ref|YP_003247015.1| - 0.023 14.6 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 GRB2-binding adapter (GAPT) DUF43 PF01861.16 gi|261402792|ref|YP_003247016.1| - 7.7e-122 405.2 1.8 1.1e-121 404.7 1.8 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_31 PF13847.6 gi|261402792|ref|YP_003247016.1| - 4.4e-05 23.3 0.1 0.00049 19.9 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Spermine_synth PF01564.17 gi|261402792|ref|YP_003247016.1| - 4.6e-05 22.9 0.2 0.00013 21.4 0.1 1.8 2 0 0 2 2 2 1 Spermine/spermidine synthase domain GidB PF02527.15 gi|261402792|ref|YP_003247016.1| - 0.01 15.2 0.1 0.02 14.2 0.1 1.4 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G N6-adenineMlase PF10237.9 gi|261402792|ref|YP_003247016.1| - 0.012 15.5 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Methyltr_RsmB-F PF01189.17 gi|261402792|ref|YP_003247016.1| - 0.02 14.6 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Exonuc_VII_S PF02609.16 gi|261402792|ref|YP_003247016.1| - 0.026 14.6 1.3 0.041 13.9 0.1 1.9 2 0 0 2 2 2 0 Exonuclease VII small subunit Lsm_C PF14894.6 gi|261402792|ref|YP_003247016.1| - 0.05 13.4 0.0 0.18 11.6 0.0 2.0 1 0 0 1 1 1 0 Lsm C-terminal Methyltransf_11 PF08241.12 gi|261402792|ref|YP_003247016.1| - 0.089 13.4 0.0 5.5 7.7 0.0 2.6 2 0 0 2 2 2 0 Methyltransferase domain PTPS PF01242.19 gi|261402793|ref|YP_003247017.1| - 1.3e-24 86.5 0.0 1.6e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Aconitase_C PF00694.19 gi|261402794|ref|YP_003247018.1| - 3.5e-22 79.1 0.4 1.5e-21 77.1 0.1 2.0 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|261402794|ref|YP_003247018.1| - 1.5e-05 24.7 0.2 0.00047 19.9 0.2 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus BPD_transp_2 PF02653.16 gi|261402795|ref|YP_003247019.1| - 7.3e-52 176.2 42.3 8.6e-52 175.9 42.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|261402796|ref|YP_003247020.1| - 2.3e-32 112.4 0.0 3.1e-32 111.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261402796|ref|YP_003247020.1| - 1.4e-12 48.1 1.8 1.4e-05 25.1 0.6 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|261402796|ref|YP_003247020.1| - 5.7e-07 29.2 0.1 1.1e-06 28.3 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|261402796|ref|YP_003247020.1| - 0.00012 22.7 0.8 0.00018 22.0 0.8 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|261402796|ref|YP_003247020.1| - 0.00014 21.7 3.4 0.0003 20.6 2.2 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|261402796|ref|YP_003247020.1| - 0.00019 21.7 0.1 0.001 19.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|261402796|ref|YP_003247020.1| - 0.00037 20.2 0.1 0.00084 19.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|261402796|ref|YP_003247020.1| - 0.0022 18.0 0.0 0.0045 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|261402796|ref|YP_003247020.1| - 0.011 15.7 0.1 0.019 14.9 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|261402796|ref|YP_003247020.1| - 0.018 15.3 0.0 0.18 12.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|261402796|ref|YP_003247020.1| - 0.019 15.1 0.2 0.046 13.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|261402796|ref|YP_003247020.1| - 0.027 14.9 0.0 0.039 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Septin PF00735.18 gi|261402796|ref|YP_003247020.1| - 0.028 13.7 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 Septin PhoH PF02562.16 gi|261402796|ref|YP_003247020.1| - 0.034 13.6 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_30 PF13604.6 gi|261402796|ref|YP_003247020.1| - 0.039 13.7 0.0 0.056 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|261402796|ref|YP_003247020.1| - 0.06 13.7 0.0 0.098 13.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.18 gi|261402796|ref|YP_003247020.1| - 0.063 12.6 0.4 0.16 11.3 0.1 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|261402796|ref|YP_003247020.1| - 0.064 12.3 0.0 0.098 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_27 PF13514.6 gi|261402796|ref|YP_003247020.1| - 0.071 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|261402796|ref|YP_003247020.1| - 0.078 11.9 0.1 0.11 11.4 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain Dynamin_N PF00350.23 gi|261402796|ref|YP_003247020.1| - 0.079 13.0 0.1 0.17 11.9 0.1 1.4 1 1 0 1 1 1 0 Dynamin family AAA_24 PF13479.6 gi|261402796|ref|YP_003247020.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|261402796|ref|YP_003247020.1| - 0.12 12.0 0.3 0.2 11.2 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.6 gi|261402796|ref|YP_003247020.1| - 0.15 12.5 0.0 0.42 11.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|261402796|ref|YP_003247020.1| - 0.17 10.6 0.6 0.76 8.5 0.3 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|261402796|ref|YP_003247020.1| - 0.2 11.2 0.1 1.2 8.7 0.2 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|261402797|ref|YP_003247021.1| - 7.9e-32 110.6 0.0 1.1e-31 110.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261402797|ref|YP_003247021.1| - 1.9e-09 37.8 0.6 1.6e-05 24.9 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|261402797|ref|YP_003247021.1| - 2.6e-08 34.0 0.2 3.3e-08 33.7 0.2 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|261402797|ref|YP_003247021.1| - 1e-07 31.6 0.3 2.7e-07 30.2 0.1 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|261402797|ref|YP_003247021.1| - 2.6e-07 31.3 0.1 4e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|261402797|ref|YP_003247021.1| - 3.6e-05 23.3 1.1 0.00016 21.2 1.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|261402797|ref|YP_003247021.1| - 0.00066 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|261402797|ref|YP_003247021.1| - 0.0016 18.8 0.0 0.0026 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|261402797|ref|YP_003247021.1| - 0.0017 18.4 0.2 0.0025 17.9 0.2 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|261402797|ref|YP_003247021.1| - 0.0019 17.8 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|261402797|ref|YP_003247021.1| - 0.0024 17.8 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|261402797|ref|YP_003247021.1| - 0.0036 17.3 0.0 0.0057 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|261402797|ref|YP_003247021.1| - 0.0046 16.7 0.0 0.0091 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|261402797|ref|YP_003247021.1| - 0.0072 15.4 0.1 0.012 14.6 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ATP_bind_1 PF03029.17 gi|261402797|ref|YP_003247021.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|261402797|ref|YP_003247021.1| - 0.013 15.8 0.0 0.029 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.8 gi|261402797|ref|YP_003247021.1| - 0.034 13.4 0.0 0.045 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) ABC_ATPase PF09818.9 gi|261402797|ref|YP_003247021.1| - 0.045 12.6 0.1 0.069 11.9 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|261402797|ref|YP_003247021.1| - 0.046 13.6 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_10 PF12846.7 gi|261402797|ref|YP_003247021.1| - 0.055 12.4 0.0 0.088 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_13 PF13166.6 gi|261402797|ref|YP_003247021.1| - 0.062 11.9 0.0 0.099 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|261402797|ref|YP_003247021.1| - 0.063 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|261402797|ref|YP_003247021.1| - 0.08 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|261402797|ref|YP_003247021.1| - 0.088 12.4 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|261402797|ref|YP_003247021.1| - 0.17 12.3 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|261402797|ref|YP_003247021.1| - 0.17 11.4 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region BCA_ABC_TP_C PF12399.8 gi|261402797|ref|YP_003247021.1| - 0.18 11.8 0.4 2.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_11 PF13086.6 gi|261402797|ref|YP_003247021.1| - 0.25 11.1 0.0 0.36 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Peripla_BP_6 PF13458.6 gi|261402798|ref|YP_003247022.1| - 2.4e-37 129.4 0.1 2.9e-37 129.1 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|261402798|ref|YP_003247022.1| - 1.1e-27 97.1 0.0 1.3e-27 96.8 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|261402798|ref|YP_003247022.1| - 5.1e-05 22.4 0.3 9.2e-05 21.6 0.3 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.13 gi|261402798|ref|YP_003247022.1| - 0.0028 16.5 0.0 0.0036 16.2 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein POR PF01558.18 gi|261402798|ref|YP_003247022.1| - 0.0034 17.5 0.0 0.36 10.9 0.0 2.5 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Peripla_BP_6 PF13458.6 gi|261402799|ref|YP_003247023.1| - 1.5e-37 130.0 0.0 1.8e-37 129.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|261402799|ref|YP_003247023.1| - 2.1e-27 96.2 0.0 2.7e-27 95.8 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|261402799|ref|YP_003247023.1| - 2.3e-06 26.8 0.2 8.2e-06 25.0 0.2 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain LppC PF04348.13 gi|261402799|ref|YP_003247023.1| - 0.00049 19.0 0.0 0.00069 18.5 0.0 1.3 1 0 0 1 1 1 1 LppC putative lipoprotein Fe-ADH PF00465.19 gi|261402799|ref|YP_003247023.1| - 0.054 12.3 0.0 0.094 11.5 0.0 1.4 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase RapH_N PF18801.1 gi|261402799|ref|YP_003247023.1| - 2.2 8.4 3.8 5 7.3 0.3 2.6 3 0 0 3 3 3 0 response regulator aspartate phosphatase H, N terminal NDK PF00334.19 gi|261402800|ref|YP_003247024.1| - 3.8e-59 198.5 1.3 4.3e-59 198.4 1.3 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GARS_C PF02843.16 gi|261402800|ref|YP_003247024.1| - 0.069 13.4 0.0 0.096 13.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain AIRS_C PF02769.22 gi|261402801|ref|YP_003247025.1| - 1.9e-58 197.0 2.2 1.8e-35 122.4 0.2 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|261402801|ref|YP_003247025.1| - 3.6e-51 171.8 0.3 4.9e-24 84.8 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|261402801|ref|YP_003247025.1| - 6.7e-10 39.4 0.1 1.7e-09 38.1 0.1 1.8 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain PurL_C PF16904.5 gi|261402801|ref|YP_003247025.1| - 0.048 14.0 0.0 0.15 12.4 0.0 1.9 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine synthase II C-terminus NTP_transf_2 PF01909.23 gi|261402801|ref|YP_003247025.1| - 2.4 8.5 7.4 1.9 8.9 0.2 3.2 3 0 0 3 3 3 0 Nucleotidyltransferase domain ABC2_membrane_5 PF13346.6 gi|261402804|ref|YP_003247028.1| - 0.012 15.1 22.5 0.016 14.8 22.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein TraL PF07178.11 gi|261402804|ref|YP_003247028.1| - 1.4 9.4 6.1 0.32 11.5 1.7 2.0 2 1 0 2 2 2 0 TraL protein DUF2304 PF10066.9 gi|261402804|ref|YP_003247028.1| - 2.1 8.6 14.7 1.6 9.0 12.9 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) DUF1129 PF06570.11 gi|261402804|ref|YP_003247028.1| - 4.1 6.8 8.8 5.3 6.5 8.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Fumarate_red_C PF02300.17 gi|261402804|ref|YP_003247028.1| - 5.4 7.1 10.0 18 5.4 0.2 2.3 2 1 1 3 3 3 0 Fumarate reductase subunit C DUF2663 PF10864.8 gi|261402804|ref|YP_003247028.1| - 5.6 7.4 8.5 0.63 10.4 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2663) DUF4131 PF13567.6 gi|261402806|ref|YP_003247030.1| - 0.18 11.5 9.2 0.091 12.4 1.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Cation_ATPase_C PF00689.21 gi|261402806|ref|YP_003247030.1| - 0.22 11.2 13.4 0.26 11.0 13.4 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus CPP1-like PF11833.8 gi|261402806|ref|YP_003247030.1| - 0.29 10.8 5.5 0.34 10.5 0.3 2.1 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like TrbC PF04956.13 gi|261402806|ref|YP_003247030.1| - 0.29 11.4 9.4 0.049 13.9 3.9 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF1129 PF06570.11 gi|261402806|ref|YP_003247030.1| - 1.5 8.3 12.2 1 8.8 1.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF2830 PF11125.8 gi|261402806|ref|YP_003247030.1| - 9 6.4 10.4 0.1 12.6 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2830) O-antigen_lig PF13425.6 gi|261402807|ref|YP_003247031.1| - 0.38 9.5 27.1 0.5 9.1 27.1 1.0 1 0 0 1 1 1 0 O-antigen ligase like membrane protein DUF4870 PF09685.10 gi|261402809|ref|YP_003247033.1| - 6.3e-07 29.5 12.0 8.1e-07 29.1 12.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) EMP70 PF02990.16 gi|261402809|ref|YP_003247033.1| - 0.32 9.6 8.5 0.39 9.3 8.5 1.2 1 0 0 1 1 1 0 Endomembrane protein 70 Peptidase_U4 PF03419.13 gi|261402809|ref|YP_003247033.1| - 0.35 10.1 11.5 0.41 9.9 11.5 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA WBP-1 PF11669.8 gi|261402809|ref|YP_003247033.1| - 0.43 11.2 0.3 0.43 11.2 0.3 1.7 2 0 0 2 2 2 0 WW domain-binding protein 1 Phage_holin_3_6 PF07332.11 gi|261402809|ref|YP_003247033.1| - 5.1 7.2 13.3 24 5.0 6.7 2.1 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III POR_N PF01855.19 gi|261402810|ref|YP_003247034.1| - 8.4e-82 274.4 0.0 1e-81 274.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|261402810|ref|YP_003247034.1| - 2.3e-23 82.5 0.0 5.6e-23 81.2 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|261402810|ref|YP_003247034.1| - 0.00018 21.2 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|261402810|ref|YP_003247034.1| - 0.00018 21.4 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Vhr1 PF04001.13 gi|261402810|ref|YP_003247034.1| - 0.15 12.4 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 Transcription factor Vhr1 GatB_N PF02934.15 gi|261402811|ref|YP_003247035.1| - 1.7e-73 247.4 0.0 1.1e-72 244.8 0.0 2.2 2 1 0 2 2 2 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|261402811|ref|YP_003247035.1| - 8.6e-32 110.1 4.9 8.6e-32 110.1 4.9 3.1 3 0 0 3 3 3 1 GatB domain GAD PF02938.14 gi|261402811|ref|YP_003247035.1| - 2.2e-25 88.7 3.3 4e-25 87.9 0.7 2.7 2 1 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|261402811|ref|YP_003247035.1| - 3e-07 30.6 0.4 9.8e-07 28.9 0.4 1.9 1 0 0 1 1 1 1 Yqey-like protein TraB PF01963.17 gi|261402811|ref|YP_003247035.1| - 0.00022 21.2 0.1 0.00042 20.3 0.1 1.5 1 0 0 1 1 1 1 TraB family Sun2_CC2 PF18580.1 gi|261402811|ref|YP_003247035.1| - 0.019 15.2 0.1 7.3 6.9 0.0 3.9 3 0 0 3 3 3 0 SUN2 coiled coil domain 2 DUF4303 PF14136.6 gi|261402811|ref|YP_003247035.1| - 0.033 13.9 1.8 1.1 9.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4303) DUF1758 PF05585.12 gi|261402812|ref|YP_003247036.1| - 2.9e-05 23.9 1.6 5.6e-05 23.0 1.0 1.7 1 1 0 1 1 1 1 Putative peptidase (DUF1758) AAA_15 PF13175.6 gi|261402813|ref|YP_003247037.1| - 6.5e-21 75.5 35.3 1e-20 74.8 35.3 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|261402813|ref|YP_003247037.1| - 2e-13 50.8 9.8 4.8e-11 43.0 9.8 2.5 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|261402813|ref|YP_003247037.1| - 0.16 12.5 1.6 0.36 11.3 0.8 2.1 2 1 0 2 2 2 0 ABC transporter AAA_23 PF13476.6 gi|261402813|ref|YP_003247037.1| - 0.4 11.1 24.6 88 3.5 24.6 3.5 1 1 0 1 1 1 0 AAA domain Asparaginase PF00710.20 gi|261402814|ref|YP_003247038.1| - 7.4e-62 208.3 0.2 1.9e-61 207.0 0.1 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|261402814|ref|YP_003247038.1| - 1.8e-36 124.8 0.1 4.1e-35 120.4 0.0 2.3 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|261402814|ref|YP_003247038.1| - 8.5e-18 63.4 6.8 8.5e-18 63.4 6.8 1.9 2 0 0 2 2 2 1 GatD N-terminal domain Rad51 PF08423.11 gi|261402815|ref|YP_003247039.1| - 4.5e-24 85.1 0.6 5.7e-24 84.8 0.6 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|261402815|ref|YP_003247039.1| - 9.3e-11 41.7 0.3 1.1e-10 41.4 0.3 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|261402815|ref|YP_003247039.1| - 1e-08 35.1 0.3 2.2e-08 34.1 0.3 1.6 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|261402815|ref|YP_003247039.1| - 1.1e-08 34.7 5.6 5.5e-07 29.2 5.6 2.5 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|261402815|ref|YP_003247039.1| - 3.2e-05 23.7 0.1 4.2e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_25 PF13481.6 gi|261402815|ref|YP_003247039.1| - 0.00015 21.4 0.0 0.0022 17.6 0.0 2.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|261402815|ref|YP_003247039.1| - 0.00036 20.5 3.9 0.00065 19.7 3.9 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|261402815|ref|YP_003247039.1| - 0.0069 16.9 0.4 0.04 14.5 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|261402815|ref|YP_003247039.1| - 0.014 15.8 3.6 0.088 13.2 3.6 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|261402815|ref|YP_003247039.1| - 0.024 14.4 0.1 0.096 12.4 0.0 1.9 1 1 0 2 2 2 0 IstB-like ATP binding protein CobU PF02283.16 gi|261402815|ref|YP_003247039.1| - 0.031 13.8 0.2 0.047 13.3 0.2 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_11 PF13086.6 gi|261402815|ref|YP_003247039.1| - 0.041 13.7 0.4 0.057 13.2 0.4 1.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|261402815|ref|YP_003247039.1| - 0.077 13.3 0.6 0.41 10.9 0.6 2.0 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|261402815|ref|YP_003247039.1| - 0.099 12.4 0.1 0.24 11.1 0.1 1.9 1 1 0 1 1 1 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|261402815|ref|YP_003247039.1| - 0.58 10.7 4.6 0.99 9.9 4.5 1.5 1 1 0 1 1 1 0 ABC transporter HycI PF01750.18 gi|261402816|ref|YP_003247040.1| - 1.9e-35 121.5 0.3 2.4e-35 121.2 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease MspA PF09203.11 gi|261402816|ref|YP_003247040.1| - 0.18 11.7 0.0 0.24 11.3 0.0 1.3 1 1 0 1 1 1 0 MspA OMPdecase PF00215.24 gi|261402817|ref|YP_003247041.1| - 1.2e-43 149.3 2.7 1.3e-43 149.2 2.7 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2325 PF10087.9 gi|261402817|ref|YP_003247041.1| - 0.041 14.0 3.4 0.072 13.2 0.7 2.5 2 2 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) Usp PF00582.26 gi|261402817|ref|YP_003247041.1| - 0.074 13.6 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 Universal stress protein family PcrB PF01884.17 gi|261402817|ref|YP_003247041.1| - 0.62 9.5 6.9 1.4 8.3 0.2 3.3 1 1 2 4 4 4 0 PcrB family Fer4_7 PF12838.7 gi|261402818|ref|YP_003247042.1| - 2.5e-06 28.0 7.4 0.00021 21.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261402818|ref|YP_003247042.1| - 6.3e-06 25.8 3.3 6.3e-06 25.8 3.3 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261402818|ref|YP_003247042.1| - 6.6e-05 22.8 2.2 6.6e-05 22.8 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261402818|ref|YP_003247042.1| - 0.00013 21.9 2.0 0.00013 21.9 2.0 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402818|ref|YP_003247042.1| - 0.00016 21.7 14.7 0.00043 20.3 14.9 1.6 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402818|ref|YP_003247042.1| - 0.00091 19.6 5.4 0.012 16.1 0.1 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402818|ref|YP_003247042.1| - 0.0012 19.0 15.1 0.0026 17.9 15.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402818|ref|YP_003247042.1| - 0.0027 18.1 3.3 0.0027 18.1 3.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain SbsC_C PF18058.1 gi|261402818|ref|YP_003247042.1| - 0.0068 16.6 0.9 0.009 16.2 0.9 1.2 1 0 0 1 1 1 1 SbsC C-terminal domain Fer4_16 PF13484.6 gi|261402818|ref|YP_003247042.1| - 0.011 16.7 1.7 0.011 16.7 1.7 2.6 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|261402818|ref|YP_003247042.1| - 0.016 15.7 1.5 0.016 15.7 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|261402818|ref|YP_003247042.1| - 0.032 14.4 16.4 0.3 11.3 16.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain PNK3P PF08645.11 gi|261402818|ref|YP_003247042.1| - 0.037 13.7 0.2 0.05 13.3 0.2 1.2 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase Fer4_18 PF13746.6 gi|261402818|ref|YP_003247042.1| - 0.25 11.6 9.0 0.41 10.8 9.0 1.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402818|ref|YP_003247042.1| - 1.6 9.4 15.1 0.11 13.0 2.0 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261402818|ref|YP_003247042.1| - 3.5 8.8 19.8 0.73 10.9 4.2 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain CbiZ PF01955.18 gi|261402819|ref|YP_003247043.1| - 3.7e-60 203.3 0.2 4.3e-60 203.1 0.2 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase AP_endonuc_2 PF01261.24 gi|261402820|ref|YP_003247044.1| - 1.8e-22 79.8 0.0 2.8e-22 79.2 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel ISN1 PF06437.11 gi|261402820|ref|YP_003247044.1| - 0.01 14.7 0.2 0.017 14.1 0.1 1.4 2 0 0 2 2 2 0 IMP-specific 5'-nucleotidase Radical_SAM PF04055.21 gi|261402820|ref|YP_003247044.1| - 0.011 16.2 0.1 0.018 15.4 0.1 1.4 1 1 0 1 1 1 0 Radical SAM superfamily CheF-arch PF04283.12 gi|261402821|ref|YP_003247045.1| - 4.8e-47 160.5 1.7 5.6e-47 160.3 1.7 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea RNase_P_pop3 PF08228.11 gi|261402821|ref|YP_003247045.1| - 0.099 12.7 1.2 0.17 11.9 0.2 1.8 2 0 0 2 2 2 0 RNase P subunit Pop3 PNPase PF03726.14 gi|261402821|ref|YP_003247045.1| - 0.1 13.1 3.0 0.33 11.5 3.0 1.9 1 0 0 1 1 1 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain CbiG_C PF01890.16 gi|261402822|ref|YP_003247046.1| - 8.1e-25 87.6 0.0 4.3e-24 85.3 0.0 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus CbiG_N PF11760.8 gi|261402822|ref|YP_003247046.1| - 9e-17 60.9 0.0 1.9e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal BofA PF07441.11 gi|261402823|ref|YP_003247047.1| - 2.5e-08 34.0 30.1 3.3e-08 33.6 30.1 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA FmdE PF02663.14 gi|261402824|ref|YP_003247048.1| - 9e-38 129.3 0.1 1.2e-37 128.9 0.1 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|261402824|ref|YP_003247048.1| - 2.1e-08 33.9 2.5 4.3e-08 33.0 2.5 1.5 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Apolipoprotein PF01442.18 gi|261402824|ref|YP_003247048.1| - 0.012 15.5 0.3 0.018 14.9 0.3 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain LIM PF00412.22 gi|261402824|ref|YP_003247048.1| - 0.026 14.7 1.0 0.063 13.5 1.0 1.7 1 0 0 1 1 1 0 LIM domain DUF1479 PF07350.12 gi|261402824|ref|YP_003247048.1| - 0.028 13.2 0.7 0.035 12.9 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1479) Zn-ribbon_8 PF09723.10 gi|261402824|ref|YP_003247048.1| - 0.048 13.8 0.7 0.12 12.5 0.7 1.6 1 0 0 1 1 1 0 Zinc ribbon domain FlxA PF14282.6 gi|261402824|ref|YP_003247048.1| - 0.07 13.1 0.3 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 FlxA-like protein Imm70 PF15601.6 gi|261402824|ref|YP_003247048.1| - 0.081 12.5 0.2 0.14 11.7 0.2 1.4 1 0 0 1 1 1 0 Immunity protein 70 SRI PF08236.11 gi|261402824|ref|YP_003247048.1| - 0.085 13.0 9.6 0.57 10.4 9.2 2.4 2 1 0 2 2 2 0 SRI (Set2 Rpb1 interacting) domain DUF3567 PF12091.8 gi|261402824|ref|YP_003247048.1| - 0.097 12.8 0.3 0.23 11.6 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) Peptidase_S49_N PF08496.10 gi|261402824|ref|YP_003247048.1| - 0.18 11.9 2.1 0.25 11.4 2.1 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal YtxH PF12732.7 gi|261402824|ref|YP_003247048.1| - 0.66 10.5 3.0 2 9.0 3.0 1.9 1 0 0 1 1 1 0 YtxH-like protein BcrAD_BadFG PF01869.20 gi|261402825|ref|YP_003247049.1| - 4.8e-44 150.9 0.4 1.4e-43 149.4 0.4 1.6 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|261402825|ref|YP_003247049.1| - 0.0005 20.4 1.4 0.14 12.6 0.1 2.4 2 1 0 2 2 2 2 Cell division protein FtsA Peptidase_M22 PF00814.25 gi|261402825|ref|YP_003247049.1| - 0.00051 19.8 0.0 0.00076 19.3 0.0 1.4 1 0 0 1 1 1 1 Glycoprotease family MutL PF13941.6 gi|261402825|ref|YP_003247049.1| - 0.002 16.8 0.6 1.1 7.7 0.1 2.9 2 1 1 3 3 3 2 MutL protein ROK PF00480.20 gi|261402825|ref|YP_003247049.1| - 0.003 17.1 1.8 0.11 11.9 0.1 2.8 2 1 0 3 3 3 1 ROK family EutA PF06277.11 gi|261402825|ref|YP_003247049.1| - 0.0048 15.8 1.6 0.44 9.3 0.3 2.1 2 0 0 2 2 2 2 Ethanolamine utilisation protein EutA PilM_2 PF11104.8 gi|261402825|ref|YP_003247049.1| - 0.018 14.1 0.7 1.3 8.0 0.1 2.5 3 0 0 3 3 3 0 Type IV pilus assembly protein PilM; Methyltransf_4 PF02390.17 gi|261402825|ref|YP_003247049.1| - 0.031 13.7 0.9 0.059 12.8 0.2 1.8 2 0 0 2 2 2 0 Putative methyltransferase NUMOD1 PF07453.13 gi|261402825|ref|YP_003247049.1| - 0.071 13.4 0.4 0.31 11.3 0.3 2.2 2 0 0 2 2 2 0 NUMOD1 domain Hydant_A_N PF05378.13 gi|261402825|ref|YP_003247049.1| - 0.085 12.6 0.3 0.4 10.4 0.1 2.1 2 1 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region FGGY_C PF02782.16 gi|261402825|ref|YP_003247049.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, C-terminal domain Hydantoinase_A PF01968.18 gi|261402825|ref|YP_003247049.1| - 0.12 11.6 0.0 2.9 7.1 0.0 2.6 3 0 0 3 3 3 0 Hydantoinase/oxoprolinase Phage_tail_NK PF16532.5 gi|261402825|ref|YP_003247049.1| - 0.24 11.0 0.7 2.6 7.7 0.1 2.3 1 1 0 2 2 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales FrhB_FdhB_C PF04432.13 gi|261402826|ref|YP_003247050.1| - 7.3e-39 133.1 0.3 7.3e-39 133.1 0.3 2.1 1 1 1 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|261402826|ref|YP_003247050.1| - 1.8e-21 76.0 0.0 4.5e-21 74.8 0.0 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_17 PF13534.6 gi|261402826|ref|YP_003247050.1| - 1.5e-06 28.6 16.1 1.3e-05 25.6 13.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261402826|ref|YP_003247050.1| - 4.4e-06 26.3 17.4 6.6e-05 22.5 2.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402826|ref|YP_003247050.1| - 2.9e-05 24.4 12.1 2.9e-05 24.4 12.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402826|ref|YP_003247050.1| - 0.00012 22.9 11.2 0.097 13.6 1.3 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|261402826|ref|YP_003247050.1| - 0.0003 20.9 7.1 0.07 13.3 0.2 3.8 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402826|ref|YP_003247050.1| - 0.00032 21.0 3.7 0.00032 21.0 3.7 3.5 3 1 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261402826|ref|YP_003247050.1| - 0.00076 19.6 20.1 0.012 15.8 16.8 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402826|ref|YP_003247050.1| - 0.001 19.1 3.1 0.001 19.1 3.1 3.1 3 0 0 3 3 1 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402826|ref|YP_003247050.1| - 0.001 19.2 21.8 0.0016 18.5 2.3 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402826|ref|YP_003247050.1| - 0.0013 18.7 16.2 0.0026 17.8 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402826|ref|YP_003247050.1| - 0.0016 19.0 15.1 0.0016 19.0 15.1 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402826|ref|YP_003247050.1| - 0.0056 16.8 13.0 0.032 14.3 0.8 3.6 4 0 0 4 4 4 1 4Fe-4S dicluster domain Methyltransf_PK PF05891.12 gi|261402826|ref|YP_003247050.1| - 0.025 14.1 0.2 0.27 10.7 0.0 2.4 3 0 0 3 3 3 0 AdoMet dependent proline di-methyltransferase Fer4_3 PF12798.7 gi|261402826|ref|YP_003247050.1| - 0.026 15.5 3.8 0.026 15.5 3.8 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261402826|ref|YP_003247050.1| - 0.088 13.7 20.4 0.27 12.1 6.4 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261402826|ref|YP_003247050.1| - 1.4 9.5 21.6 1.2 9.8 5.9 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|261402827|ref|YP_003247051.1| - 4.4e-40 138.0 0.5 4.1e-22 78.8 0.1 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|261402827|ref|YP_003247051.1| - 5.2e-18 64.8 2.7 1e-17 63.8 2.7 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin PF00384.22 gi|261402829|ref|YP_003247053.1| - 2.7e-19 69.4 0.0 6.6e-18 64.9 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Pyr_redox_2 PF07992.14 gi|261402830|ref|YP_003247054.1| - 1.7e-22 80.0 0.0 6.6e-22 78.1 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|261402830|ref|YP_003247054.1| - 1.7e-21 75.1 47.8 1.9e-07 30.6 4.2 5.0 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261402830|ref|YP_003247054.1| - 2.5e-15 56.4 32.3 1.6e-08 34.6 7.0 3.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261402830|ref|YP_003247054.1| - 9.8e-15 54.9 38.3 6.1e-07 29.9 11.4 4.6 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402830|ref|YP_003247054.1| - 6.1e-13 48.7 38.6 1.5e-06 28.3 10.7 4.9 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402830|ref|YP_003247054.1| - 6.9e-13 48.1 50.1 0.00019 21.4 3.2 5.5 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261402830|ref|YP_003247054.1| - 1.2e-12 48.6 28.2 0.004 18.1 0.3 5.5 5 0 0 5 5 5 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|261402830|ref|YP_003247054.1| - 1.6e-11 44.1 36.9 0.00012 22.2 14.2 4.6 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402830|ref|YP_003247054.1| - 4.3e-09 35.9 49.3 0.00066 19.6 3.0 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|261402830|ref|YP_003247054.1| - 3.2e-08 33.5 33.6 0.012 16.1 1.2 5.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|261402830|ref|YP_003247054.1| - 3.4e-08 34.1 22.7 0.0058 17.3 0.9 4.6 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|261402830|ref|YP_003247054.1| - 4.6e-07 30.2 30.1 0.011 16.2 1.1 5.4 4 1 1 5 5 5 3 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|261402830|ref|YP_003247054.1| - 1.1e-06 28.3 0.7 1.9e-06 27.5 0.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_17 PF13534.6 gi|261402830|ref|YP_003247054.1| - 4.4e-06 27.1 34.3 0.00074 20.0 8.7 5.0 3 2 3 6 6 6 4 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|261402830|ref|YP_003247054.1| - 2.6e-05 23.5 0.7 3.8e-05 23.0 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|261402830|ref|YP_003247054.1| - 5.8e-05 22.4 0.1 0.00056 19.1 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|261402830|ref|YP_003247054.1| - 0.00013 22.1 0.0 0.00027 21.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_13 PF13370.6 gi|261402830|ref|YP_003247054.1| - 0.00019 21.9 29.7 0.094 13.3 1.9 4.9 5 0 0 5 5 4 2 4Fe-4S single cluster domain of Ferredoxin I HI0933_like PF03486.14 gi|261402830|ref|YP_003247054.1| - 0.00029 19.7 0.8 0.011 14.4 0.7 2.2 2 0 0 2 2 2 1 HI0933-like protein Fer4_22 PF17179.4 gi|261402830|ref|YP_003247054.1| - 0.00035 21.4 28.8 0.013 16.3 0.7 4.8 5 0 0 5 5 4 2 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.21 gi|261402830|ref|YP_003247054.1| - 0.00043 19.6 0.1 0.005 16.2 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|261402830|ref|YP_003247054.1| - 0.00057 19.6 0.2 0.025 14.2 0.8 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|261402830|ref|YP_003247054.1| - 0.005 17.4 0.1 0.016 15.8 0.1 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|261402830|ref|YP_003247054.1| - 0.016 14.5 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|261402830|ref|YP_003247054.1| - 0.025 13.8 0.1 0.071 12.4 0.1 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF4033 PF13225.6 gi|261402830|ref|YP_003247054.1| - 0.05 13.6 2.7 0.27 11.3 0.1 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4033) FAD_binding_3 PF01494.19 gi|261402830|ref|YP_003247054.1| - 0.1 11.8 0.6 0.15 11.3 0.6 1.2 1 0 0 1 1 1 0 FAD binding domain Fer4_3 PF12798.7 gi|261402830|ref|YP_003247054.1| - 4.9 8.3 67.0 0.076 14.0 5.6 6.1 6 0 0 6 6 5 0 4Fe-4S binding domain Fer4 PF00037.27 gi|261402831|ref|YP_003247055.1| - 2.8e-53 175.7 122.7 3.1e-07 29.9 7.9 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402831|ref|YP_003247055.1| - 3e-45 152.6 90.0 2e-10 41.1 7.7 7.5 6 1 2 8 8 8 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402831|ref|YP_003247055.1| - 1.2e-33 115.8 93.9 0.001 20.0 1.5 11.4 8 4 4 12 12 12 12 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|261402831|ref|YP_003247055.1| - 7.1e-32 108.2 123.8 1.3e-05 25.0 1.5 12.0 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402831|ref|YP_003247055.1| - 1.7e-31 108.1 98.8 7.3e-08 32.4 10.9 8.3 5 3 4 9 9 9 9 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402831|ref|YP_003247055.1| - 8.8e-31 105.8 97.4 1.1e-06 28.7 10.0 7.8 3 2 8 11 11 11 11 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402831|ref|YP_003247055.1| - 2.2e-29 101.4 98.9 1.3e-07 31.6 13.8 9.1 6 2 3 9 9 9 7 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402831|ref|YP_003247055.1| - 3.3e-22 77.2 113.3 0.0026 17.7 2.2 12.1 12 0 0 12 12 12 10 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402831|ref|YP_003247055.1| - 1.7e-16 60.4 99.8 1e-05 25.9 9.2 10.0 7 3 1 9 9 9 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402831|ref|YP_003247055.1| - 8.4e-11 42.3 97.1 0.025 15.1 0.7 11.2 4 2 8 13 13 13 10 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261402831|ref|YP_003247055.1| - 4.1e-07 30.5 143.6 0.089 13.8 5.5 12.4 12 0 0 12 12 12 7 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261402831|ref|YP_003247055.1| - 9.6e-07 29.0 96.4 0.062 13.5 2.8 9.2 2 2 6 9 9 9 8 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402831|ref|YP_003247055.1| - 1.5e-06 28.2 116.6 0.041 14.4 4.4 11.7 11 1 1 12 12 12 8 4Fe-4S binding domain NiFeSe_Hases PF00374.19 gi|261402832|ref|YP_003247056.1| - 2.2e-42 145.7 0.1 3.6e-24 85.6 0.0 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase DUF2935 PF11155.8 gi|261402832|ref|YP_003247056.1| - 0.077 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2935) Oxidored_q6 PF01058.22 gi|261402833|ref|YP_003247057.1| - 4.6e-35 120.3 0.0 7.8e-35 119.6 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Anti-TRAP PF15777.5 gi|261402833|ref|YP_003247057.1| - 1.5 8.9 6.7 0.13 12.2 1.7 1.9 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein NiFe_hyd_SSU_C PF14720.6 gi|261402833|ref|YP_003247057.1| - 2.5 8.5 7.5 10 6.6 7.5 2.0 1 1 0 1 1 1 0 NiFe/NiFeSe hydrogenase small subunit C-terminal FlpD PF02662.16 gi|261402834|ref|YP_003247058.1| - 1.5e-54 183.2 0.0 1.7e-54 183.0 0.0 1.1 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit HGD-D PF06050.13 gi|261402835|ref|YP_003247059.1| - 5.3e-89 299.2 0.3 6.3e-89 298.9 0.3 1.0 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component Erf4 PF10256.9 gi|261402835|ref|YP_003247059.1| - 0.09 12.9 0.0 0.4 10.8 0.0 2.1 2 0 0 2 2 2 0 Golgin subfamily A member 7/ERF4 family RTX_C PF08339.10 gi|261402835|ref|YP_003247059.1| - 0.29 11.2 2.6 0.94 9.5 0.1 2.5 3 0 0 3 3 3 0 RTX C-terminal domain TSC22 PF01166.18 gi|261402835|ref|YP_003247059.1| - 6.1 7.2 7.7 2.3 8.6 0.7 3.4 2 1 0 2 2 2 0 TSC-22/dip/bun family AP_endonuc_2 PF01261.24 gi|261402836|ref|YP_003247060.1| - 3.2e-13 49.6 0.0 3.7e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Trans_reg_C PF00486.28 gi|261402836|ref|YP_003247060.1| - 0.0027 17.7 0.0 0.056 13.5 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulatory protein, C terminal Metalloenzyme PF01676.18 gi|261402838|ref|YP_003247062.1| - 1.9e-39 135.5 0.0 2.2e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily PhosphMutase PF10143.9 gi|261402838|ref|YP_003247062.1| - 4.3e-36 124.3 0.0 6.4e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Alk_phosphatase PF00245.20 gi|261402838|ref|YP_003247062.1| - 0.0024 16.9 0.0 0.0035 16.4 0.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.22 gi|261402838|ref|YP_003247062.1| - 0.051 13.2 0.0 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase DUF43 PF01861.16 gi|261402839|ref|YP_003247063.1| - 5.6e-91 304.1 0.0 7.6e-91 303.7 0.0 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Cons_hypoth95 PF03602.15 gi|261402839|ref|YP_003247063.1| - 0.0001 22.0 0.0 0.00018 21.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6-adenineMlase PF10237.9 gi|261402839|ref|YP_003247063.1| - 0.00099 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase RuvB_C PF05491.13 gi|261402839|ref|YP_003247063.1| - 0.0011 18.8 0.7 0.016 15.1 0.4 2.4 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain DUF2072 PF09845.9 gi|261402839|ref|YP_003247063.1| - 0.022 15.0 3.5 0.049 13.9 3.5 1.6 1 0 0 1 1 1 0 Zn-ribbon containing protein Methyltransf_25 PF13649.6 gi|261402839|ref|YP_003247063.1| - 0.027 15.2 0.0 0.067 13.9 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain TFIIS_C PF01096.18 gi|261402839|ref|YP_003247063.1| - 0.049 13.5 1.6 0.45 10.4 0.3 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RPA_C PF08784.11 gi|261402839|ref|YP_003247063.1| - 0.062 14.0 0.0 2.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal MarR PF01047.22 gi|261402839|ref|YP_003247063.1| - 0.071 13.0 0.2 0.21 11.6 0.2 1.8 1 0 0 1 1 1 0 MarR family MTS PF05175.14 gi|261402839|ref|YP_003247063.1| - 0.082 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain FaeA PF04703.12 gi|261402839|ref|YP_003247063.1| - 0.11 12.9 0.1 0.41 11.1 0.1 2.0 1 0 0 1 1 1 0 FaeA-like protein Rrf2 PF02082.20 gi|261402839|ref|YP_003247063.1| - 0.12 12.7 0.1 0.53 10.7 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator Anti-TRAP PF15777.5 gi|261402839|ref|YP_003247063.1| - 0.16 12.0 1.4 0.24 11.4 0.0 2.0 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn-ribbon_8 PF09723.10 gi|261402839|ref|YP_003247063.1| - 0.37 11.0 2.2 0.6 10.3 0.6 2.0 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.14 gi|261402839|ref|YP_003247063.1| - 2.7 8.1 4.4 5.5 7.1 1.5 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid Methyltrans_SAM PF10672.9 gi|261402840|ref|YP_003247064.1| - 2e-19 69.9 0.0 2.8e-19 69.4 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_31 PF13847.6 gi|261402840|ref|YP_003247064.1| - 6.5e-12 45.5 0.1 1.4e-11 44.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|261402840|ref|YP_003247064.1| - 2e-11 44.0 0.1 3.5e-11 43.2 0.1 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|261402840|ref|YP_003247064.1| - 1.9e-10 40.7 0.0 3.1e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|261402840|ref|YP_003247064.1| - 2.7e-10 40.8 0.0 4.9e-10 40.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|261402840|ref|YP_003247064.1| - 1.3e-08 34.6 0.0 3.2e-08 33.3 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|261402840|ref|YP_003247064.1| - 3.1e-08 33.4 0.0 5.6e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|261402840|ref|YP_003247064.1| - 4.7e-08 32.7 0.0 8e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PUA_3 PF17785.1 gi|261402840|ref|YP_003247064.1| - 6.2e-08 32.3 0.0 1.5e-07 31.1 0.0 1.6 1 0 0 1 1 1 1 PUA-like domain FtsJ PF01728.19 gi|261402840|ref|YP_003247064.1| - 2.9e-07 30.8 0.0 5.5e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 gi|261402840|ref|YP_003247064.1| - 1.6e-06 28.6 0.0 3.4e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261402840|ref|YP_003247064.1| - 8.1e-06 25.8 0.0 1.4e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|261402840|ref|YP_003247064.1| - 2.7e-05 23.5 0.0 3.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Ubie_methyltran PF01209.18 gi|261402840|ref|YP_003247064.1| - 3.3e-05 23.3 0.2 7.4e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|261402840|ref|YP_003247064.1| - 3.9e-05 23.1 0.0 6.4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|261402840|ref|YP_003247064.1| - 6.8e-05 22.8 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_10 PF05971.12 gi|261402840|ref|YP_003247064.1| - 0.00013 21.5 0.0 0.00027 20.4 0.0 1.6 2 0 0 2 2 2 1 RNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|261402840|ref|YP_003247064.1| - 0.00017 21.3 0.0 0.0013 18.4 0.0 2.2 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|261402840|ref|YP_003247064.1| - 0.00041 21.0 0.0 0.00086 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|261402840|ref|YP_003247064.1| - 0.00043 19.7 0.0 0.00096 18.5 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_3 PF01596.17 gi|261402840|ref|YP_003247064.1| - 0.0017 17.5 0.1 0.0029 16.8 0.1 1.3 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.18 gi|261402840|ref|YP_003247064.1| - 0.0044 16.7 0.0 0.022 14.5 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TPMT PF05724.11 gi|261402840|ref|YP_003247064.1| - 0.016 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_4 PF02390.17 gi|261402840|ref|YP_003247064.1| - 0.028 13.9 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.11 gi|261402840|ref|YP_003247064.1| - 0.045 12.7 0.0 0.075 12.0 0.0 1.3 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Topoisom_bac PF01131.20 gi|261402841|ref|YP_003247065.1| - 8.5e-120 400.5 10.3 1.7e-101 340.2 6.5 2.3 2 0 0 2 2 2 2 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|261402841|ref|YP_003247065.1| - 1.2e-48 162.6 33.6 1.7e-18 66.1 6.2 4.1 4 0 0 4 4 4 3 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|261402841|ref|YP_003247065.1| - 1.4e-21 76.7 0.1 1.4e-21 76.7 0.1 2.8 3 0 0 3 3 2 1 Toprim domain Intein_splicing PF14890.6 gi|261402841|ref|YP_003247065.1| - 6.6e-15 55.2 9.3 6.6e-15 55.2 9.3 3.2 4 1 1 5 5 4 1 Intein splicing domain DZR PF12773.7 gi|261402841|ref|YP_003247065.1| - 0.00071 19.6 6.8 0.61 10.2 6.8 3.2 1 1 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|261402841|ref|YP_003247065.1| - 0.001 19.1 9.7 0.49 10.5 0.2 3.7 3 0 0 3 3 3 1 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.6 gi|261402841|ref|YP_003247065.1| - 0.0011 18.3 17.6 0.061 12.7 0.0 4.8 4 0 0 4 4 4 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|261402841|ref|YP_003247065.1| - 0.0048 16.6 10.2 0.088 12.6 0.1 4.3 3 0 0 3 3 3 1 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|261402841|ref|YP_003247065.1| - 0.0084 16.5 16.2 1.1 9.7 1.9 3.7 2 1 0 2 2 2 1 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.13 gi|261402841|ref|YP_003247065.1| - 0.011 15.5 0.5 1.4 8.7 0.1 3.3 3 0 0 3 3 3 0 InsA N-terminal domain ADK_lid PF05191.14 gi|261402841|ref|YP_003247065.1| - 0.014 15.4 14.0 0.58 10.2 0.2 4.2 4 0 0 4 4 4 0 Adenylate kinase, active site lid MarR PF01047.22 gi|261402841|ref|YP_003247065.1| - 0.017 15.0 0.2 1.8 8.5 0.0 3.0 3 0 0 3 3 2 0 MarR family TF_Zn_Ribbon PF08271.12 gi|261402841|ref|YP_003247065.1| - 0.031 13.8 7.0 10 5.7 0.1 4.0 3 0 0 3 3 3 0 TFIIB zinc-binding zf_Rg PF17915.1 gi|261402841|ref|YP_003247065.1| - 0.071 12.5 3.6 9.6 5.7 0.1 3.4 3 0 0 3 3 3 0 Reverse gyrase zinc finger zf-TFIIB PF13453.6 gi|261402841|ref|YP_003247065.1| - 0.087 12.2 8.5 7.2 6.0 0.1 4.2 4 0 0 4 4 3 0 Transcription factor zinc-finger DUF2310 PF10071.9 gi|261402841|ref|YP_003247065.1| - 0.099 11.9 0.7 14 4.9 0.0 3.2 2 1 1 3 3 3 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) Integrase_Zn PF02022.19 gi|261402841|ref|YP_003247065.1| - 0.3 11.1 1.5 59 3.7 0.1 3.5 3 0 0 3 3 3 0 Integrase Zinc binding domain DNA_ligase_ZBD PF03119.16 gi|261402841|ref|YP_003247065.1| - 0.49 10.5 20.0 0.34 11.0 0.4 4.7 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|261402841|ref|YP_003247065.1| - 0.72 10.0 14.8 5.5 7.2 0.8 4.5 4 0 0 4 4 4 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|261402841|ref|YP_003247065.1| - 0.89 9.3 8.4 3 7.6 0.0 4.0 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|261402841|ref|YP_003247065.1| - 2.1 8.3 22.2 0.13 12.2 1.2 4.0 4 0 0 4 4 3 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.10 gi|261402841|ref|YP_003247065.1| - 2.4 8.0 10.8 23 4.9 0.0 4.3 4 0 0 4 4 4 0 A2L zinc ribbon domain Anti-TRAP PF15777.5 gi|261402841|ref|YP_003247065.1| - 6.6 6.8 7.8 27 4.8 1.6 3.3 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein PhaG_MnhG_YufB PF03334.14 gi|261402842|ref|YP_003247066.1| - 0.0059 16.8 7.8 0.034 14.4 7.8 1.9 1 1 0 1 1 1 1 Na+/H+ antiporter subunit YwiC PF14256.6 gi|261402842|ref|YP_003247066.1| - 0.008 16.5 1.2 0.01 16.1 1.2 1.2 1 0 0 1 1 1 1 YwiC-like protein TrbC PF04956.13 gi|261402842|ref|YP_003247066.1| - 0.76 10.0 5.2 0.54 10.5 0.5 2.1 1 1 1 2 2 2 0 TrbC/VIRB2 family BPD_transp_1 PF00528.22 gi|261402843|ref|YP_003247067.1| - 4e-23 82.1 21.2 5.8e-23 81.6 10.1 2.0 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF1910 PF08928.10 gi|261402844|ref|YP_003247068.1| - 0.072 13.1 0.6 0.13 12.3 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1910) PTA_PTB PF01515.19 gi|261402845|ref|YP_003247069.1| - 0.015 14.6 0.0 0.039 13.3 0.0 1.6 2 0 0 2 2 2 0 Phosphate acetyl/butaryl transferase GTP_cyclohydro2 PF00925.20 gi|261402845|ref|YP_003247069.1| - 0.049 13.2 0.0 8.5 6.0 0.0 2.4 2 0 0 2 2 2 0 GTP cyclohydrolase II Transketolase_C PF02780.20 gi|261402845|ref|YP_003247069.1| - 0.16 11.9 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain Prenyltransf PF01255.19 gi|261402846|ref|YP_003247070.1| - 8.1e-82 274.1 0.3 9.5e-82 273.8 0.3 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase PrcB_C PF14343.6 gi|261402847|ref|YP_003247071.1| - 1.3e-11 44.5 2.9 1.3e-11 44.5 2.9 3.2 3 0 0 3 3 3 1 PrcB C-terminal Lactamase_B_2 PF12706.7 gi|261402848|ref|YP_003247072.1| - 9.9e-16 57.8 0.0 1.3e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|261402848|ref|YP_003247072.1| - 5.1e-06 26.5 0.0 8.8e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|261402848|ref|YP_003247072.1| - 0.0012 18.8 0.7 0.0068 16.4 0.3 2.0 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily FHA_2 PF17913.1 gi|261402848|ref|YP_003247072.1| - 0.096 12.9 0.1 0.18 12.1 0.1 1.4 1 0 0 1 1 1 0 FHA domain Polysacc_synt PF01943.17 gi|261402849|ref|YP_003247073.1| - 1.7e-43 149.0 31.7 1.7e-43 149.0 31.7 2.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|261402849|ref|YP_003247073.1| - 3.2e-19 69.4 39.8 1.1e-16 61.2 15.0 3.8 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|261402849|ref|YP_003247073.1| - 2.4e-05 24.0 16.8 2.4e-05 24.0 16.8 4.5 3 2 1 4 4 4 2 MatE CbiJ PF02571.14 gi|261402850|ref|YP_003247074.1| - 3e-67 226.6 0.0 3.4e-67 226.4 0.0 1.0 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK DapB_N PF01113.20 gi|261402850|ref|YP_003247074.1| - 0.053 13.6 0.3 0.23 11.6 0.0 2.1 2 2 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus AP_endonuc_2 PF01261.24 gi|261402850|ref|YP_003247074.1| - 0.064 12.7 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Response_reg PF00072.24 gi|261402850|ref|YP_003247074.1| - 0.1 12.8 0.1 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 Response regulator receiver domain HDV_ag PF01517.18 gi|261402850|ref|YP_003247074.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Hepatitis delta virus delta antigen Rep_fac_C PF08542.11 gi|261402851|ref|YP_003247075.1| - 4.5e-25 87.9 0.1 1.4e-24 86.3 0.1 1.9 1 0 0 1 1 1 1 Replication factor C C-terminal domain Intein_splicing PF14890.6 gi|261402851|ref|YP_003247075.1| - 1.8e-20 73.3 4.0 1.8e-20 73.3 4.0 1.9 2 0 0 2 2 2 1 Intein splicing domain DNA_pol3_delta2 PF13177.6 gi|261402851|ref|YP_003247075.1| - 1.8e-13 50.6 0.0 1.3e-11 44.5 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|261402851|ref|YP_003247075.1| - 2.5e-10 40.9 0.8 2.8e-07 31.0 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|261402851|ref|YP_003247075.1| - 1e-06 28.6 0.1 1.5e-05 24.8 0.0 2.7 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|261402851|ref|YP_003247075.1| - 5.7e-05 23.0 0.0 0.00018 21.3 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|261402851|ref|YP_003247075.1| - 0.00019 21.7 0.1 0.00048 20.4 0.1 1.7 1 0 0 1 1 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|261402851|ref|YP_003247075.1| - 0.00053 20.0 0.0 0.0013 18.7 0.0 1.7 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|261402851|ref|YP_003247075.1| - 0.0042 17.5 0.0 0.19 12.1 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|261402851|ref|YP_003247075.1| - 0.006 16.0 0.0 3 7.2 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Oxidored_nitro PF00148.19 gi|261402852|ref|YP_003247076.1| - 4.4e-15 55.3 0.0 7.2e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Nit_Regul_Hom PF10126.9 gi|261402852|ref|YP_003247076.1| - 0.0046 17.0 0.3 2.9 7.9 0.0 3.2 3 0 0 3 3 3 2 Uncharacterized protein, homolog of nitrogen regulatory protein PII Swi6_N PF18530.1 gi|261402852|ref|YP_003247076.1| - 0.012 15.8 0.1 0.027 14.6 0.1 1.6 1 0 0 1 1 1 0 Swi6 N-terminal domain tRNA_int_endo PF01974.17 gi|261402853|ref|YP_003247077.1| - 6.9e-30 103.0 0.4 1.2e-29 102.2 0.4 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|261402853|ref|YP_003247077.1| - 1.3e-19 69.6 0.3 2.5e-19 68.7 0.3 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Sen15 PF09631.10 gi|261402853|ref|YP_003247077.1| - 0.002 18.4 0.1 0.0038 17.5 0.1 1.5 1 0 0 1 1 1 1 Sen15 protein Ldh_2 PF02615.14 gi|261402854|ref|YP_003247078.1| - 1.7e-122 408.8 0.0 1.9e-122 408.6 0.0 1.0 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase DnaJ_C PF01556.18 gi|261402854|ref|YP_003247078.1| - 0.022 14.8 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 DnaJ C terminal domain CBS PF00571.28 gi|261402855|ref|YP_003247079.1| - 8.5e-38 128.6 9.6 5.6e-21 74.7 2.5 2.2 2 0 0 2 2 2 2 CBS domain PRC PF05239.16 gi|261402855|ref|YP_003247079.1| - 4.1e-05 23.6 0.3 0.4 10.8 0.1 2.6 2 0 0 2 2 2 2 PRC-barrel domain IF3_N PF05198.16 gi|261402855|ref|YP_003247079.1| - 0.0067 16.7 0.8 1.4 9.3 0.1 2.6 2 2 0 2 2 2 1 Translation initiation factor IF-3, N-terminal domain Trypsin_2 PF13365.6 gi|261402855|ref|YP_003247079.1| - 0.0095 16.8 0.2 0.44 11.4 0.0 2.3 2 0 0 2 2 2 1 Trypsin-like peptidase domain Peptidase_S32 PF05579.13 gi|261402855|ref|YP_003247079.1| - 0.015 14.5 0.0 0.63 9.2 0.0 2.1 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 DUF3659 PF12396.8 gi|261402855|ref|YP_003247079.1| - 0.02 14.8 1.7 1.5 8.8 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Blt1_C PF17183.4 gi|261402855|ref|YP_003247079.1| - 0.02 14.5 1.1 0.12 12.0 0.1 2.2 2 0 0 2 2 2 0 Get5 carboxyl domain Ribosomal_L9_C PF03948.14 gi|261402855|ref|YP_003247079.1| - 0.063 13.7 2.7 2.6 8.6 0.1 3.1 2 2 1 3 3 3 0 Ribosomal protein L9, C-terminal domain sCache_3_2 PF17203.4 gi|261402855|ref|YP_003247079.1| - 0.067 13.3 0.1 8.1 6.6 0.0 2.3 2 1 0 2 2 2 0 Single cache domain 3 Peptidase_S46 PF10459.9 gi|261402855|ref|YP_003247079.1| - 0.11 11.1 2.5 0.16 10.6 0.0 2.1 3 0 0 3 3 3 0 Peptidase S46 Peptidase_S29 PF02907.15 gi|261402855|ref|YP_003247079.1| - 0.15 11.8 0.0 0.39 10.5 0.0 1.7 2 1 0 2 2 2 0 Hepatitis C virus NS3 protease GHMP_kinases_N PF00288.26 gi|261402856|ref|YP_003247080.1| - 2e-06 27.9 0.4 4e-06 27.0 0.4 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|261402856|ref|YP_003247080.1| - 0.0012 19.2 0.0 0.0034 17.7 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal YqeY PF09424.10 gi|261402856|ref|YP_003247080.1| - 0.053 13.6 0.1 0.086 12.9 0.1 1.3 1 0 0 1 1 1 0 Yqey-like protein PRA-CH PF01502.18 gi|261402857|ref|YP_003247081.1| - 3e-34 116.7 0.5 5.3e-34 115.9 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase BBS2_Mid PF14783.6 gi|261402857|ref|YP_003247081.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, middle region Radical_SAM PF04055.21 gi|261402858|ref|YP_003247082.1| - 5.3e-19 69.2 0.6 1.7e-17 64.3 0.3 2.2 2 0 0 2 2 2 1 Radical SAM superfamily SinI PF08671.10 gi|261402858|ref|YP_003247082.1| - 0.038 13.8 1.2 0.27 11.1 0.0 3.0 4 0 0 4 4 4 0 Anti-repressor SinI PASTA PF03793.19 gi|261402858|ref|YP_003247082.1| - 0.1 12.5 0.0 2.2 8.2 0.0 2.4 2 0 0 2 2 2 0 PASTA domain Fer4_14 PF13394.6 gi|261402858|ref|YP_003247082.1| - 0.29 11.3 1.9 0.42 10.8 0.5 2.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain GTP_EFTU_D2 PF03144.25 gi|261402859|ref|YP_003247083.1| - 3.3e-12 46.6 0.5 6.5e-12 45.7 0.5 1.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|261402859|ref|YP_003247083.1| - 5.1e-05 23.1 0.1 0.00013 21.8 0.1 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 eIF2_C PF09173.11 gi|261402859|ref|YP_003247083.1| - 0.0024 18.1 0.3 0.0091 16.2 0.0 2.0 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal DUF111 PF01969.17 gi|261402860|ref|YP_003247084.1| - 8.5e-114 380.5 0.1 9.7e-114 380.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 FeoB_N PF02421.18 gi|261402862|ref|YP_003247086.1| - 5.3e-65 217.7 1.6 8.3e-65 217.1 1.6 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|261402862|ref|YP_003247086.1| - 8e-52 174.3 13.9 1.6e-34 118.5 3.7 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|261402862|ref|YP_003247086.1| - 1.6e-20 73.3 0.1 4e-20 72.0 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.12 gi|261402862|ref|YP_003247086.1| - 1e-16 60.3 1.3 1e-16 60.3 1.3 3.3 3 1 0 3 3 3 1 Ferrous iron transport protein B C terminus FeoB_Cyto PF17910.1 gi|261402862|ref|YP_003247086.1| - 5.6e-16 58.9 3.9 5.6e-16 58.9 3.9 1.8 2 0 0 2 2 1 1 FeoB cytosolic helical domain AIG1 PF04548.16 gi|261402862|ref|YP_003247086.1| - 7.1e-06 25.5 0.0 1.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|261402862|ref|YP_003247086.1| - 1.8e-05 24.7 0.5 0.048 13.6 0.2 2.5 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|261402862|ref|YP_003247086.1| - 4.5e-05 23.1 0.4 0.0011 18.6 0.4 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|261402862|ref|YP_003247086.1| - 0.0001 21.8 0.0 0.00027 20.4 0.0 1.7 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|261402862|ref|YP_003247086.1| - 0.0005 20.2 0.2 0.092 12.8 0.0 2.7 1 1 0 2 2 2 1 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|261402862|ref|YP_003247086.1| - 0.0074 16.3 0.1 0.025 14.6 0.1 1.9 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MeaB PF03308.16 gi|261402862|ref|YP_003247086.1| - 0.015 14.3 0.1 1.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|261402862|ref|YP_003247086.1| - 0.019 14.6 0.1 0.096 12.3 0.1 2.0 1 1 0 1 1 1 0 Ras family Arf PF00025.21 gi|261402862|ref|YP_003247086.1| - 0.025 14.0 0.4 0.066 12.7 0.4 1.7 1 1 0 1 1 1 0 ADP-ribosylation factor family MnmE_helical PF12631.7 gi|261402862|ref|YP_003247086.1| - 0.16 12.1 0.2 0.25 11.5 0.2 1.3 1 0 0 1 1 1 0 MnmE helical domain FeoA PF04023.14 gi|261402863|ref|YP_003247087.1| - 1.9e-19 69.7 0.1 2.1e-19 69.5 0.1 1.0 1 0 0 1 1 1 1 FeoA domain Fe_dep_repr_C PF02742.15 gi|261402864|ref|YP_003247088.1| - 9.1e-21 73.7 2.3 4.1e-20 71.6 1.9 2.1 2 1 1 3 3 3 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|261402864|ref|YP_003247088.1| - 3.9e-18 65.4 0.2 1.5e-17 63.5 0.2 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|261402864|ref|YP_003247088.1| - 2.5e-07 30.5 0.0 2.2e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|261402864|ref|YP_003247088.1| - 4.1e-06 26.6 0.0 9.1e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|261402864|ref|YP_003247088.1| - 1.6e-05 24.3 0.1 3.8e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|261402864|ref|YP_003247088.1| - 0.00016 21.3 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.10 gi|261402864|ref|YP_003247088.1| - 0.00017 21.3 0.0 0.0003 20.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|261402864|ref|YP_003247088.1| - 0.001 19.0 0.0 0.0024 17.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|261402864|ref|YP_003247088.1| - 0.0011 19.2 0.0 0.0027 18.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator B-block_TFIIIC PF04182.12 gi|261402864|ref|YP_003247088.1| - 0.0025 18.0 0.1 0.0036 17.4 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|261402864|ref|YP_003247088.1| - 0.0045 17.4 0.2 0.01 16.3 0.0 1.7 2 1 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|261402864|ref|YP_003247088.1| - 0.0048 16.8 0.0 0.039 13.9 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|261402864|ref|YP_003247088.1| - 0.019 14.8 0.1 0.067 13.1 0.1 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB SecA_PP_bind PF01043.20 gi|261402864|ref|YP_003247088.1| - 0.024 15.3 0.2 0.038 14.6 0.2 1.5 1 1 0 1 1 1 0 SecA preprotein cross-linking domain HTH_5 PF01022.20 gi|261402864|ref|YP_003247088.1| - 0.024 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|261402864|ref|YP_003247088.1| - 0.044 14.0 0.2 0.37 11.0 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain ANT PF03374.14 gi|261402864|ref|YP_003247088.1| - 0.069 13.5 0.0 0.13 12.6 0.0 1.5 1 1 0 1 1 1 0 Phage antirepressor protein KilAC domain LexA_DNA_bind PF01726.16 gi|261402864|ref|YP_003247088.1| - 0.11 12.2 0.0 0.27 11.1 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|261402864|ref|YP_003247088.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 CtsR PF05848.11 gi|261402864|ref|YP_003247088.1| - 0.12 12.3 0.1 0.67 9.9 0.0 2.0 2 0 0 2 2 2 0 CtsR N-terminal HTH domain Porphobil_deam PF01379.20 gi|261402865|ref|YP_003247089.1| - 2e-67 226.7 0.0 2.6e-67 226.3 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|261402865|ref|YP_003247089.1| - 1.2e-16 60.8 0.0 2.9e-16 59.6 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain YhfZ_C PF14503.6 gi|261402865|ref|YP_003247089.1| - 0.026 14.1 0.1 0.051 13.1 0.1 1.6 1 1 0 1 1 1 0 YhfZ C-terminal domain SBP_bac_3 PF00497.20 gi|261402865|ref|YP_003247089.1| - 0.035 13.5 0.0 0.13 11.7 0.0 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 LysR_substrate PF03466.20 gi|261402865|ref|YP_003247089.1| - 0.04 13.3 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 LysR substrate binding domain DUF116 PF01976.17 gi|261402865|ref|YP_003247089.1| - 0.098 12.2 0.3 5.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF116 Diphthami_syn_2 PF01902.17 gi|261402866|ref|YP_003247090.1| - 9.7e-105 348.9 3.4 1.1e-104 348.7 3.4 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|261402866|ref|YP_003247090.1| - 0.0065 16.0 0.1 0.021 14.3 0.0 1.9 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC HTH_19 PF12844.7 gi|261402866|ref|YP_003247090.1| - 0.032 14.3 0.7 13 5.9 0.1 3.7 3 1 1 4 4 4 0 Helix-turn-helix domain ThiI PF02568.14 gi|261402866|ref|YP_003247090.1| - 0.063 12.9 0.0 0.16 11.6 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|261402866|ref|YP_003247090.1| - 0.079 11.7 0.0 0.12 11.1 0.0 1.4 1 1 0 1 1 1 0 tRNA methyl transferase DUF1878 PF08963.10 gi|261402866|ref|YP_003247090.1| - 0.093 13.2 0.1 0.28 11.7 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1878) Archease PF01951.16 gi|261402867|ref|YP_003247091.1| - 2.4e-47 160.6 0.5 2.7e-47 160.5 0.5 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Iso_dh PF00180.20 gi|261402868|ref|YP_003247092.1| - 1.2e-111 373.2 0.1 1.4e-111 373.0 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase SHMT PF00464.19 gi|261402869|ref|YP_003247093.1| - 1.2e-83 281.0 0.0 1.5e-83 280.6 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|261402869|ref|YP_003247093.1| - 1.8e-06 27.4 0.0 7.6e-06 25.3 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|261402869|ref|YP_003247093.1| - 1.2e-05 24.7 0.0 1.9e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|261402869|ref|YP_003247093.1| - 0.0034 16.4 0.0 0.0054 15.8 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|261402869|ref|YP_003247093.1| - 0.042 12.8 0.0 0.058 12.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V FrhB_FdhB_C PF04432.13 gi|261402870|ref|YP_003247094.1| - 1.1e-37 129.3 0.3 3.1e-37 127.8 0.3 1.8 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus NIR_SIR PF01077.22 gi|261402870|ref|YP_003247094.1| - 2.2e-35 121.5 0.3 4.9e-35 120.4 0.3 1.6 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain FrhB_FdhB_N PF04422.13 gi|261402870|ref|YP_003247094.1| - 4.2e-17 62.0 0.0 9.5e-17 60.9 0.0 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|261402870|ref|YP_003247094.1| - 2.4e-12 46.1 50.5 6.5e-06 25.7 5.4 5.8 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402870|ref|YP_003247094.1| - 9.6e-12 45.3 28.3 0.00037 21.0 0.4 4.9 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261402870|ref|YP_003247094.1| - 4e-11 42.3 38.7 0.00065 19.6 3.1 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain NIR_SIR_ferr PF03460.17 gi|261402870|ref|YP_003247094.1| - 2.5e-09 36.8 0.0 7.4e-09 35.3 0.0 1.8 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_6 PF12837.7 gi|261402870|ref|YP_003247094.1| - 2.8e-08 33.5 40.6 0.0002 21.3 3.5 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261402870|ref|YP_003247094.1| - 4.1e-08 33.2 36.8 0.018 15.2 4.6 4.5 3 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261402870|ref|YP_003247094.1| - 2.6e-07 31.0 23.8 0.058 13.8 0.2 5.4 4 1 2 6 6 6 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402870|ref|YP_003247094.1| - 5.2e-07 29.7 37.4 4.5e-06 26.7 12.2 4.2 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402870|ref|YP_003247094.1| - 3.9e-06 26.9 41.0 0.00015 21.8 14.8 5.0 4 2 1 5 5 5 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402870|ref|YP_003247094.1| - 7.6e-06 26.8 38.6 0.026 15.4 1.0 6.4 6 1 2 8 8 8 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|261402870|ref|YP_003247094.1| - 0.00078 19.6 5.2 0.00078 19.6 5.2 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402870|ref|YP_003247094.1| - 0.0012 19.4 34.0 0.25 11.9 1.3 5.6 4 1 1 5 5 5 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261402870|ref|YP_003247094.1| - 0.0022 18.8 32.2 0.043 14.7 1.3 5.3 5 1 0 5 5 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402870|ref|YP_003247094.1| - 0.03 14.8 1.9 0.03 14.8 1.9 5.8 6 0 0 6 6 5 0 4Fe-4S binding domain Rubredoxin_C PF18267.1 gi|261402870|ref|YP_003247094.1| - 0.068 13.1 0.2 0.46 10.4 0.0 2.4 2 0 0 2 2 2 0 Rubredoxin NAD+ reductase C-terminal domain Fer4_13 PF13370.6 gi|261402870|ref|YP_003247094.1| - 0.18 12.3 0.1 0.18 12.3 0.1 5.5 5 1 1 6 6 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|261402870|ref|YP_003247094.1| - 0.4 11.4 23.3 1.4 9.7 2.1 5.6 4 2 1 5 5 5 0 4Fe-4S single cluster domain JTB PF05439.12 gi|261402870|ref|YP_003247094.1| - 5.9 7.0 7.2 0.35 10.9 0.1 2.3 2 0 0 2 2 2 0 Jumping translocation breakpoint protein (JTB) Gate PF07670.14 gi|261402871|ref|YP_003247095.1| - 4.1e-11 43.1 20.8 5.1e-06 26.7 6.5 2.8 2 2 0 2 2 2 2 Nucleoside recognition Peripla_BP_2 PF01497.18 gi|261402872|ref|YP_003247096.1| - 3.3e-21 75.9 0.0 4.1e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HEM4 PF02602.15 gi|261402872|ref|YP_003247096.1| - 0.0074 15.7 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD ThiP_synth PF10120.9 gi|261402872|ref|YP_003247096.1| - 0.081 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Thiamine-phosphate synthase ABC_tran PF00005.27 gi|261402873|ref|YP_003247097.1| - 3.7e-29 102.0 0.0 8.2e-29 100.9 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|261402873|ref|YP_003247097.1| - 4.7e-11 43.0 1.1 0.00013 21.9 0.1 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_14 PF13173.6 gi|261402873|ref|YP_003247097.1| - 1.9e-07 31.1 1.4 4.2e-05 23.6 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|261402873|ref|YP_003247097.1| - 3.7e-07 30.2 0.0 9e-07 28.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|261402873|ref|YP_003247097.1| - 1.6e-06 28.7 0.4 1.4e-05 25.6 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|261402873|ref|YP_003247097.1| - 3.9e-06 26.5 0.6 8.5e-05 22.1 0.6 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|261402873|ref|YP_003247097.1| - 4.3e-06 26.4 0.0 1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|261402873|ref|YP_003247097.1| - 6.1e-06 26.5 0.9 8e-05 22.9 0.9 2.5 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|261402873|ref|YP_003247097.1| - 0.00026 21.0 1.7 0.00026 21.0 1.7 2.7 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|261402873|ref|YP_003247097.1| - 0.00058 20.2 0.2 0.077 13.4 0.1 2.6 2 0 0 2 2 2 1 RNA helicase AAA PF00004.29 gi|261402873|ref|YP_003247097.1| - 0.0015 18.9 6.6 0.0056 17.1 2.9 3.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|261402873|ref|YP_003247097.1| - 0.0019 17.5 0.1 0.012 14.9 0.0 2.3 3 0 0 3 3 2 1 Zeta toxin NACHT PF05729.12 gi|261402873|ref|YP_003247097.1| - 0.0043 17.0 0.5 0.015 15.2 0.0 2.0 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|261402873|ref|YP_003247097.1| - 0.0057 16.6 0.7 0.024 14.6 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|261402873|ref|YP_003247097.1| - 0.006 17.1 10.6 0.21 12.1 10.6 2.6 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.25 gi|261402873|ref|YP_003247097.1| - 0.0062 16.2 0.0 0.0088 15.7 0.0 1.5 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|261402873|ref|YP_003247097.1| - 0.0068 16.4 0.0 0.043 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|261402873|ref|YP_003247097.1| - 0.0077 16.2 5.8 0.031 14.2 0.1 3.4 2 2 1 3 3 3 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|261402873|ref|YP_003247097.1| - 0.0088 15.8 0.0 0.023 14.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|261402873|ref|YP_003247097.1| - 0.015 15.0 0.3 0.043 13.5 0.1 2.0 2 1 0 2 2 1 0 AAA domain AAA_27 PF13514.6 gi|261402873|ref|YP_003247097.1| - 0.022 14.4 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|261402873|ref|YP_003247097.1| - 0.034 14.4 1.0 0.39 11.0 0.1 2.8 3 0 0 3 3 3 0 AAA domain TniB PF05621.11 gi|261402873|ref|YP_003247097.1| - 0.035 13.5 0.7 1.5 8.2 0.2 2.4 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|261402873|ref|YP_003247097.1| - 0.053 13.7 0.1 0.1 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|261402873|ref|YP_003247097.1| - 0.055 12.3 1.2 0.16 10.7 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|261402873|ref|YP_003247097.1| - 0.058 13.1 0.6 0.83 9.4 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein IlvN PF07991.12 gi|261402873|ref|YP_003247097.1| - 0.062 12.9 0.1 2.4 7.7 0.1 2.4 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain MMR_HSR1 PF01926.23 gi|261402873|ref|YP_003247097.1| - 0.064 13.3 1.7 0.72 9.9 0.0 2.7 3 0 0 3 3 3 0 50S ribosome-binding GTPase dNK PF01712.19 gi|261402873|ref|YP_003247097.1| - 0.065 13.1 0.9 2.9 7.7 0.1 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_18 PF13238.6 gi|261402873|ref|YP_003247097.1| - 0.078 13.5 3.1 0.9 10.1 0.8 3.3 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|261402873|ref|YP_003247097.1| - 0.086 12.4 1.3 0.54 9.8 0.3 2.5 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|261402873|ref|YP_003247097.1| - 0.11 12.2 1.2 0.37 10.4 0.2 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|261402873|ref|YP_003247097.1| - 0.11 12.9 1.2 0.96 9.8 0.8 2.6 2 1 0 2 2 2 0 AAA domain NAD_binding_7 PF13241.6 gi|261402873|ref|YP_003247097.1| - 0.15 12.5 0.3 0.57 10.7 0.1 2.0 2 0 0 2 2 2 0 Putative NAD(P)-binding AAA_17 PF13207.6 gi|261402873|ref|YP_003247097.1| - 0.41 11.1 2.0 4.7 7.6 0.1 3.1 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|261402873|ref|YP_003247097.1| - 1.4 8.8 6.9 0.5 10.3 0.1 3.2 3 2 0 3 3 3 0 NTPase FecCD PF01032.18 gi|261402874|ref|YP_003247098.1| - 2.1e-58 197.8 33.3 3.3e-58 197.2 33.3 1.3 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|261402874|ref|YP_003247098.1| - 6.6e-06 25.8 16.4 6.6e-06 25.8 16.4 2.6 1 1 2 3 3 3 1 ABC 3 transport family FecCD PF01032.18 gi|261402875|ref|YP_003247099.1| - 1.4e-68 231.2 33.5 1.9e-68 230.8 33.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|261402876|ref|YP_003247100.1| - 1.4e-25 90.3 0.0 2.1e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein GATase_3 PF07685.14 gi|261402877|ref|YP_003247101.1| - 2.1e-36 125.4 0.1 3e-36 124.9 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|261402877|ref|YP_003247101.1| - 6.3e-19 68.6 1.7 5.2e-12 46.0 0.0 2.6 2 1 1 3 3 3 2 AAA domain CbiA PF01656.23 gi|261402877|ref|YP_003247101.1| - 6.6e-18 65.0 0.1 1.2e-17 64.2 0.1 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Csm1_B PF18211.1 gi|261402877|ref|YP_003247101.1| - 0.046 13.6 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Csm1 subunit domain B SNO PF01174.19 gi|261402877|ref|YP_003247101.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF1611 PF07755.11 gi|261402877|ref|YP_003247101.1| - 0.14 11.4 0.2 0.25 10.6 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain NAD_binding_8 PF13450.6 gi|261402878|ref|YP_003247102.1| - 1.4e-10 41.2 0.4 6.8e-09 35.8 0.1 2.4 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|261402878|ref|YP_003247102.1| - 0.00063 19.2 0.0 0.012 14.9 0.0 2.1 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|261402878|ref|YP_003247102.1| - 0.067 12.8 0.5 4.1 6.9 0.5 2.4 2 1 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|261402878|ref|YP_003247102.1| - 0.11 11.7 2.6 0.13 11.5 0.4 2.0 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 gi|261402878|ref|YP_003247102.1| - 0.23 10.7 1.2 4.3 6.5 0.2 2.5 3 0 0 3 3 3 0 Thi4 family MCM PF00493.23 gi|261402879|ref|YP_003247103.1| - 2.9e-77 258.8 0.0 4.6e-77 258.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|261402879|ref|YP_003247103.1| - 3.6e-24 85.0 3.8 1.1e-23 83.4 3.8 1.9 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|261402879|ref|YP_003247103.1| - 1.2e-15 57.5 0.1 3e-15 56.2 0.1 1.7 1 0 0 1 1 1 1 MCM OB domain Mg_chelatase PF01078.21 gi|261402879|ref|YP_003247103.1| - 1.2e-08 34.6 0.4 4e-06 26.4 0.0 2.8 3 1 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|261402879|ref|YP_003247103.1| - 5.6e-06 26.4 0.0 2.9e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|261402879|ref|YP_003247103.1| - 0.0009 19.1 0.0 0.0023 17.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|261402879|ref|YP_003247103.1| - 0.0038 16.9 0.0 0.16 11.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Imm51 PF15595.6 gi|261402879|ref|YP_003247103.1| - 0.019 14.9 0.2 0.058 13.3 0.2 1.9 1 0 0 1 1 1 0 Immunity protein 51 HTH_36 PF13730.6 gi|261402879|ref|YP_003247103.1| - 0.051 13.6 1.2 1.6 8.7 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain RuvB_N PF05496.12 gi|261402879|ref|YP_003247103.1| - 0.096 12.4 0.1 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain A2L_zn_ribbon PF08792.10 gi|261402879|ref|YP_003247103.1| - 0.26 11.0 1.2 0.52 10.1 0.1 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain AAA PF00004.29 gi|261402879|ref|YP_003247103.1| - 0.31 11.4 1.6 2.7 8.4 0.1 3.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) zf_UBZ PF18439.1 gi|261402879|ref|YP_003247103.1| - 0.32 10.6 2.0 0.63 9.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 gi|261402879|ref|YP_003247103.1| - 3 8.6 6.3 14 6.4 2.8 2.8 2 1 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Aldedh PF00171.22 gi|261402880|ref|YP_003247104.1| - 4.6e-151 503.4 0.1 5.4e-151 503.2 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|261402880|ref|YP_003247104.1| - 5.2e-06 25.8 0.3 2e-05 23.8 0.1 2.0 2 1 0 2 2 2 1 Acyl-CoA reductase (LuxC) Pro_isomerase PF00160.21 gi|261402881|ref|YP_003247105.1| - 0.00049 20.4 0.4 2.5 8.4 0.0 3.5 4 0 0 4 4 4 2 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PASTA PF03793.19 gi|261402881|ref|YP_003247105.1| - 0.06 13.2 0.1 0.19 11.6 0.1 1.8 1 0 0 1 1 1 0 PASTA domain NOG1_N PF17835.1 gi|261402882|ref|YP_003247106.1| - 4.5e-41 140.5 1.7 4.5e-41 140.5 1.7 2.0 2 0 0 2 2 2 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|261402882|ref|YP_003247106.1| - 4.2e-24 84.1 1.0 9.4e-24 83.0 1.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|261402882|ref|YP_003247106.1| - 4.5e-22 78.3 0.0 1.1e-21 77.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261402882|ref|YP_003247106.1| - 3.6e-17 62.3 1.2 6.6e-17 61.5 1.2 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|261402882|ref|YP_003247106.1| - 7.4e-12 45.2 0.2 2.3e-11 43.6 0.2 1.8 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|261402882|ref|YP_003247106.1| - 1.7e-11 44.3 2.8 1.5e-05 25.0 1.9 2.7 1 1 1 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|261402882|ref|YP_003247106.1| - 6.8e-08 32.5 1.3 1.8e-07 31.1 1.3 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 gi|261402882|ref|YP_003247106.1| - 1.1e-07 31.5 3.4 6e-05 22.6 1.4 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family GTP_EFTU PF00009.27 gi|261402882|ref|YP_003247106.1| - 1.9e-07 30.8 0.6 5.7e-05 22.7 0.2 2.7 1 1 0 2 2 2 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|261402882|ref|YP_003247106.1| - 1.5e-06 27.8 0.6 2.6e-06 27.0 0.6 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit cobW PF02492.19 gi|261402882|ref|YP_003247106.1| - 3.9e-05 23.3 0.7 0.018 14.6 0.1 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|261402882|ref|YP_003247106.1| - 0.00024 21.2 0.5 0.49 10.4 0.0 2.6 1 1 1 2 2 2 2 Dynamin family Ras PF00071.22 gi|261402882|ref|YP_003247106.1| - 0.003 17.2 1.6 0.17 11.5 0.3 2.4 2 0 0 2 2 2 1 Ras family Roc PF08477.13 gi|261402882|ref|YP_003247106.1| - 0.0099 16.1 0.2 0.94 9.7 0.0 2.6 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 gi|261402882|ref|YP_003247106.1| - 0.012 15.0 0.2 0.019 14.3 0.2 1.5 1 0 0 1 1 1 0 AIG1 family AAA_18 PF13238.6 gi|261402882|ref|YP_003247106.1| - 0.015 15.8 0.1 0.045 14.3 0.1 2.0 2 1 0 2 2 1 0 AAA domain AAA_14 PF13173.6 gi|261402882|ref|YP_003247106.1| - 0.027 14.5 0.1 2.3 8.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|261402882|ref|YP_003247106.1| - 0.042 13.3 0.1 0.26 10.7 0.0 2.4 3 0 0 3 3 3 0 Bacterial TniB protein ATP_bind_1 PF03029.17 gi|261402882|ref|YP_003247106.1| - 0.043 13.6 0.1 0.61 9.8 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF1967 PF09269.11 gi|261402882|ref|YP_003247106.1| - 0.059 13.3 0.2 0.3 11.1 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1967) HK97-gp10_like PF04883.12 gi|261402882|ref|YP_003247106.1| - 0.8 10.7 5.9 1 10.4 0.2 3.2 2 1 1 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component DUF3087 PF11286.8 gi|261402883|ref|YP_003247107.1| - 0.016 14.7 0.2 0.84 9.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) UPF0113 PF03657.13 gi|261402884|ref|YP_003247108.1| - 2e-22 79.2 1.9 3.3e-22 78.5 0.8 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain UPF0113_N PF17833.1 gi|261402884|ref|YP_003247108.1| - 3.9e-08 33.7 0.3 9.4e-08 32.5 0.3 1.6 1 0 0 1 1 1 1 UPF0113 Pre-PUA domain TruB-C_2 PF09157.11 gi|261402884|ref|YP_003247108.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal DUF530 PF04409.12 gi|261402885|ref|YP_003247109.1| - 4.3e-75 253.1 32.7 4.9e-50 170.4 21.2 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF530) DUF4795 PF16043.5 gi|261402885|ref|YP_003247109.1| - 0.0075 15.9 2.9 0.0075 15.9 2.9 3.1 3 1 0 3 3 3 1 Domain of unknown function (DUF4795) SKA2 PF16740.5 gi|261402885|ref|YP_003247109.1| - 0.031 14.1 6.5 0.83 9.5 0.2 3.0 4 0 0 4 4 4 0 Spindle and kinetochore-associated protein 2 DUF5388 PF17363.2 gi|261402885|ref|YP_003247109.1| - 0.043 14.0 7.4 0.13 12.5 0.1 3.6 4 0 0 4 4 4 0 Family of unknown function (DUF5388) tRNA_NucTransf2 PF09249.11 gi|261402886|ref|YP_003247110.1| - 6.8e-43 145.5 0.0 1.2e-42 144.7 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|261402886|ref|YP_003247110.1| - 9.8e-18 64.2 1.0 2.8e-17 62.8 0.1 2.3 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|261402886|ref|YP_003247110.1| - 1.4e-05 25.3 0.1 3e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|261402886|ref|YP_003247110.1| - 0.0025 17.9 0.1 0.01 15.9 0.1 2.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase IF-2B PF01008.17 gi|261402887|ref|YP_003247111.1| - 4.2e-92 308.3 0.5 4.8e-92 308.1 0.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF374 PF04028.13 gi|261402889|ref|YP_003247113.1| - 0.14 11.7 0.0 2.1 8.0 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF374) Mso1_Sec1_bdg PF14475.6 gi|261402891|ref|YP_003247115.1| - 4.4e-05 23.0 1.0 6.6 6.4 0.0 4.0 4 0 0 4 4 4 3 Sec1-binding region of Mso1 DUF3081 PF11280.8 gi|261402891|ref|YP_003247115.1| - 0.0015 18.3 0.1 1.1 9.1 0.0 3.0 1 1 3 4 4 4 2 Protein of unknown function (DUF3081) Big_3 PF07523.12 gi|261402891|ref|YP_003247115.1| - 0.048 14.0 1.0 3.3 8.1 0.1 2.2 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Luciferase_cat PF10285.9 gi|261402891|ref|YP_003247115.1| - 0.08 12.3 0.0 0.085 12.2 0.0 1.1 1 0 0 1 1 1 0 Luciferase catalytic domain SBBP PF06739.11 gi|261402891|ref|YP_003247115.1| - 0.27 11.3 8.1 15 5.6 0.1 4.1 4 0 0 4 4 4 0 Beta-propeller repeat DJ-1_PfpI PF01965.24 gi|261402893|ref|YP_003247117.1| - 1.2e-48 165.0 0.2 1.4e-48 164.8 0.2 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|261402893|ref|YP_003247117.1| - 0.0049 16.6 0.0 0.1 12.3 0.0 2.1 1 1 0 2 2 2 1 ThiJ/PfpI family-like Catalase_C PF18011.1 gi|261402893|ref|YP_003247117.1| - 0.022 14.4 0.0 0.034 13.8 0.0 1.4 1 1 0 1 1 1 0 C-terminal domain found in long catalases DUF677 PF05055.12 gi|261402893|ref|YP_003247117.1| - 0.031 13.2 0.0 0.051 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF677) DUF705 PF05152.12 gi|261402893|ref|YP_003247117.1| - 0.052 13.0 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF705) DAHP_snth_FXD PF18152.1 gi|261402893|ref|YP_003247117.1| - 0.087 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain GATase PF00117.28 gi|261402893|ref|YP_003247117.1| - 0.16 11.7 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Hydrolase PF00702.26 gi|261402894|ref|YP_003247118.1| - 6.3e-19 69.1 1.1 4.9e-18 66.2 1.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|261402894|ref|YP_003247118.1| - 0.00018 21.3 0.3 0.28 10.9 0.2 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|261402894|ref|YP_003247118.1| - 0.00045 20.3 0.2 0.00085 19.5 0.2 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase IF2_N PF04760.15 gi|261402894|ref|YP_003247118.1| - 0.006 16.4 2.0 0.27 11.1 0.5 3.5 3 1 0 3 3 3 1 Translation initiation factor IF-2, N-terminal region PrpR_N PF06506.11 gi|261402894|ref|YP_003247118.1| - 0.024 14.2 0.1 1.4 8.5 0.0 2.6 2 1 1 3 3 3 0 Propionate catabolism activator HAD PF12710.7 gi|261402894|ref|YP_003247118.1| - 0.11 13.0 0.1 0.66 10.4 0.1 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Sigma70_r1_1 PF03979.14 gi|261402894|ref|YP_003247118.1| - 0.45 10.6 7.2 3.3 7.8 0.5 3.5 3 1 1 4 4 4 0 Sigma-70 factor, region 1.1 PhosphMutase PF10143.9 gi|261402895|ref|YP_003247119.1| - 9.2e-59 198.1 0.0 1.6e-58 197.4 0.0 1.4 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|261402895|ref|YP_003247119.1| - 5.2e-53 180.0 0.0 5.9e-53 179.8 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|261402895|ref|YP_003247119.1| - 0.00027 20.6 0.1 0.0017 18.0 0.1 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF296 PF03479.15 gi|261402895|ref|YP_003247119.1| - 0.015 15.6 0.0 0.033 14.6 0.0 1.5 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain Alk_phosphatase PF00245.20 gi|261402895|ref|YP_003247119.1| - 0.11 11.4 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Alkaline phosphatase Glyco_hydro_57 PF03065.15 gi|261402896|ref|YP_003247120.1| - 1.6e-71 241.2 9.6 2.8e-71 240.4 9.6 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|261402896|ref|YP_003247120.1| - 1e-07 31.9 0.0 1.9e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2733 PF10813.8 gi|261402896|ref|YP_003247120.1| - 0.14 11.9 0.1 0.44 10.4 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2733) Glyco_hydro_15 PF00723.21 gi|261402897|ref|YP_003247121.1| - 6.1e-13 48.4 1.1 6.7e-06 25.1 0.1 3.9 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|261402897|ref|YP_003247121.1| - 0.03 13.5 0.0 0.058 12.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl-hydrolase family 116, catalytic region Glyco_transf_36 PF06165.11 gi|261402897|ref|YP_003247121.1| - 0.058 12.8 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 36 DUF4965 PF16335.5 gi|261402897|ref|YP_003247121.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4965) DUF2582 PF10771.9 gi|261402898|ref|YP_003247122.1| - 5.7e-22 77.6 1.5 6.1e-22 77.5 1.5 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix domain (DUF2582) Pox_I6 PF04595.13 gi|261402898|ref|YP_003247122.1| - 0.044 12.7 0.0 0.044 12.7 0.0 1.0 1 0 0 1 1 1 0 Poxvirus I6-like family UPF0180 PF03698.13 gi|261402898|ref|YP_003247122.1| - 0.063 13.5 0.0 0.08 13.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Glycos_transf_1 PF00534.20 gi|261402899|ref|YP_003247123.1| - 8.2e-53 178.4 0.0 1.2e-52 178.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|261402899|ref|YP_003247123.1| - 3.2e-38 131.2 0.0 4.8e-38 130.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|261402899|ref|YP_003247123.1| - 7.8e-32 110.6 0.0 8.8e-30 103.9 0.0 2.8 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.11 gi|261402899|ref|YP_003247123.1| - 1.4e-25 90.4 0.4 1.3e-12 48.0 0.2 2.7 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|261402899|ref|YP_003247123.1| - 9.1e-20 71.7 0.0 1.1e-17 64.9 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|261402899|ref|YP_003247123.1| - 1.8e-11 44.2 0.3 4.4e-10 39.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|261402899|ref|YP_003247123.1| - 5.9e-11 42.6 0.0 1.3e-10 41.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|261402899|ref|YP_003247123.1| - 0.00045 19.0 0.1 0.038 12.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase family 20 ubiquitin PF00240.23 gi|261402899|ref|YP_003247123.1| - 0.1 12.4 0.0 0.44 10.3 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin family DUF2325 PF10087.9 gi|261402899|ref|YP_003247123.1| - 0.17 12.0 0.6 0.38 10.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) Glyco_transf_5 PF08323.11 gi|261402900|ref|YP_003247124.1| - 2.7e-28 99.3 0.0 6.3e-28 98.1 0.0 1.6 1 1 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|261402900|ref|YP_003247124.1| - 6.9e-19 68.0 0.0 1.7e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|261402900|ref|YP_003247124.1| - 7.4e-15 55.6 0.0 1.8e-14 54.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|261402900|ref|YP_003247124.1| - 1.7e-06 28.1 0.0 4.6e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|261402900|ref|YP_003247124.1| - 0.0042 17.5 0.0 0.0069 16.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Topoisom_I_N PF02919.15 gi|261402900|ref|YP_003247124.1| - 0.084 12.4 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, DNA binding fragment PGI PF00342.19 gi|261402901|ref|YP_003247125.1| - 2.4e-32 112.2 0.2 1.8e-30 106.0 0.2 2.2 1 1 0 1 1 1 1 Phosphoglucose isomerase ADP_PFK_GK PF04587.15 gi|261402902|ref|YP_003247126.1| - 4.5e-115 384.6 0.6 5.2e-115 384.4 0.6 1.0 1 0 0 1 1 1 1 ADP-specific Phosphofructokinase/Glucokinase conserved region CNOT1_HEAT PF16418.5 gi|261402902|ref|YP_003247126.1| - 0.018 15.1 0.0 0.058 13.5 0.0 1.9 1 0 0 1 1 1 0 CCR4-NOT transcription complex subunit 1 HEAT repeat Rif1_N PF12231.8 gi|261402902|ref|YP_003247126.1| - 0.16 10.9 1.1 0.97 8.4 0.3 2.1 2 0 0 2 2 2 0 Rap1-interacting factor 1 N terminal 5HT_transport_N PF03491.13 gi|261402902|ref|YP_003247126.1| - 0.26 11.5 0.3 0.61 10.3 0.0 1.7 2 0 0 2 2 2 0 Serotonin (5-HT) neurotransmitter transporter, N-terminus Creatininase PF02633.14 gi|261402903|ref|YP_003247127.1| - 3e-13 49.8 0.0 4.8e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Creatinine amidohydrolase Fumerase_C PF05683.12 gi|261402904|ref|YP_003247128.1| - 5.2e-50 169.6 0.0 6.2e-50 169.4 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus DUF167 PF02594.16 gi|261402905|ref|YP_003247129.1| - 3e-21 75.3 0.7 3.9e-21 74.9 0.7 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YggU family COG1872 MdcE PF06833.11 gi|261402905|ref|YP_003247129.1| - 0.082 12.4 0.0 0.099 12.1 0.0 1.2 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) PdaC PF13739.6 gi|261402905|ref|YP_003247129.1| - 0.086 13.8 0.3 0.14 13.2 0.3 1.4 1 0 0 1 1 1 0 Deacetylase PdaC GHL15 PF14885.6 gi|261402905|ref|YP_003247129.1| - 0.14 12.1 0.0 0.15 12.0 0.0 1.0 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 Radical_SAM PF04055.21 gi|261402906|ref|YP_003247130.1| - 9.6e-22 78.1 1.0 5.6e-20 72.4 0.0 2.5 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|261402906|ref|YP_003247130.1| - 2.5e-08 34.3 1.4 2.2e-07 31.2 0.0 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|261402906|ref|YP_003247130.1| - 1.4e-07 31.7 0.2 2.9e-06 27.4 0.0 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain RimK PF08443.11 gi|261402907|ref|YP_003247131.1| - 9.6e-36 123.2 0.1 1.2e-35 122.8 0.1 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|261402907|ref|YP_003247131.1| - 2.7e-18 66.0 0.1 3.7e-18 65.5 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|261402907|ref|YP_003247131.1| - 6.3e-10 39.3 0.4 1.9e-09 37.7 0.4 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|261402907|ref|YP_003247131.1| - 9.9e-09 34.8 0.1 7.9e-06 25.3 0.1 2.9 1 1 0 1 1 1 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|261402907|ref|YP_003247131.1| - 1.8e-06 27.4 0.0 0.015 14.5 0.0 2.9 1 1 1 2 2 2 2 Sugar-transfer associated ATP-grasp GSP_synth PF03738.14 gi|261402907|ref|YP_003247131.1| - 0.0003 20.1 0.0 0.0013 18.0 0.0 1.8 2 0 0 2 2 2 1 Glutathionylspermidine synthase preATP-grasp DUF3326 PF11805.8 gi|261402907|ref|YP_003247131.1| - 0.018 13.9 0.0 0.026 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3326) R2K_3 PF14243.6 gi|261402907|ref|YP_003247131.1| - 0.16 11.9 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 dUTPase PF00692.19 gi|261402908|ref|YP_003247132.1| - 1.7e-08 34.2 0.0 4.1e-08 33.0 0.0 1.7 2 0 0 2 2 2 1 dUTPase DCD PF06559.11 gi|261402908|ref|YP_003247132.1| - 3.9e-08 32.5 0.0 8.1e-05 21.6 0.0 2.9 2 1 1 3 3 3 3 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HCBP_related PF06594.11 gi|261402909|ref|YP_003247133.1| - 0.062 13.2 0.3 0.22 11.5 0.3 2.0 1 0 0 1 1 1 0 Haemolysin-type calcium binding protein related domain Peptidase_S24 PF00717.23 gi|261402910|ref|YP_003247134.1| - 3.6e-06 26.8 0.2 1.3e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 Peptidase S24-like UPF0370 PF13980.6 gi|261402910|ref|YP_003247134.1| - 4.2 7.5 6.3 10 6.3 6.3 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0370) NTPase_I-T PF01931.18 gi|261402911|ref|YP_003247135.1| - 5e-52 176.0 0.0 5.9e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 DUF4428 PF14471.6 gi|261402911|ref|YP_003247135.1| - 0.023 14.6 1.4 0.074 13.0 1.4 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) CEBP_ZZ PF16366.5 gi|261402911|ref|YP_003247135.1| - 0.085 13.1 0.6 0.16 12.2 0.6 1.4 1 0 0 1 1 1 0 Cytoplasmic polyadenylation element-binding protein ZZ domain GTP_EFTU_D4 PF14578.6 gi|261402912|ref|YP_003247136.1| - 1.4e-29 101.8 0.3 6.7e-29 99.6 0.3 2.3 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|261402912|ref|YP_003247136.1| - 4.6e-28 98.1 0.6 2e-24 86.2 0.0 2.6 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|261402912|ref|YP_003247136.1| - 4.3e-22 78.2 4.1 1.3e-21 76.7 4.1 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 Intein_splicing PF14890.6 gi|261402912|ref|YP_003247136.1| - 2.6e-20 72.7 3.0 2.6e-20 72.7 3.0 2.4 2 1 0 2 2 2 1 Intein splicing domain GTP_EFTU_D2 PF03144.25 gi|261402912|ref|YP_003247136.1| - 5e-09 36.4 4.8 1e-08 35.4 0.0 3.6 4 0 0 4 4 3 1 Elongation factor Tu domain 2 ATP_bind_1 PF03029.17 gi|261402912|ref|YP_003247136.1| - 9.6e-05 22.3 0.0 0.00024 21.0 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|261402912|ref|YP_003247136.1| - 0.0011 19.0 0.3 0.0042 17.2 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Ras PF00071.22 gi|261402912|ref|YP_003247136.1| - 0.0022 17.6 0.0 0.0054 16.3 0.0 1.6 1 0 0 1 1 1 1 Ras family Phage_Gp17 PF17549.2 gi|261402912|ref|YP_003247136.1| - 0.0053 16.8 1.0 0.27 11.3 0.5 2.5 2 0 0 2 2 2 1 Gene Product 17 ComZ PF10815.8 gi|261402912|ref|YP_003247136.1| - 0.0072 16.3 0.2 0.89 9.6 0.0 2.8 2 0 0 2 2 2 1 ComZ PT-HINT PF07591.11 gi|261402912|ref|YP_003247136.1| - 0.016 15.4 0.3 0.14 12.4 0.0 2.7 2 1 1 3 3 3 0 Pretoxin HINT domain Ribosomal_L11 PF00298.19 gi|261402912|ref|YP_003247136.1| - 0.043 14.3 0.2 0.15 12.5 0.2 1.9 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain GXGXG PF01493.19 gi|261402913|ref|YP_003247137.1| - 3.6e-10 39.8 21.8 6.3e-09 35.7 21.6 2.3 1 1 1 2 2 2 2 GXGXG motif Siah-Interact_N PF09032.11 gi|261402913|ref|YP_003247137.1| - 0.16 12.3 0.0 0.26 11.6 0.0 1.3 1 0 0 1 1 1 0 Siah interacting protein, N terminal YbjQ_1 PF01906.17 gi|261402914|ref|YP_003247138.1| - 2.4e-11 44.2 2.1 1.4e-06 28.8 0.2 2.2 2 1 0 2 2 2 2 Putative heavy-metal-binding Amidohydro_3 PF07969.11 gi|261402915|ref|YP_003247139.1| - 1.5e-90 304.9 0.1 1.9e-90 304.6 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|261402915|ref|YP_003247139.1| - 4.4e-08 32.8 0.1 0.00028 20.3 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family Molydop_binding PF01568.21 gi|261402916|ref|YP_003247140.1| - 2.6e-22 78.9 0.0 3.1e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|261402916|ref|YP_003247140.1| - 5.6e-05 23.2 0.0 0.00013 22.1 0.1 1.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain UPF0552 PF10574.9 gi|261402916|ref|YP_003247140.1| - 0.079 12.3 0.1 0.1 11.9 0.1 1.2 1 0 0 1 1 1 0 Arp2/3-interacting proteins Arpin Fer4 PF00037.27 gi|261402917|ref|YP_003247141.1| - 3.1e-18 64.7 18.0 1.9e-09 36.9 6.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402917|ref|YP_003247141.1| - 9.8e-15 54.9 34.3 1.1e-08 35.5 13.0 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402917|ref|YP_003247141.1| - 7.1e-13 48.5 5.0 8.7e-06 25.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402917|ref|YP_003247141.1| - 1.1e-12 47.5 16.4 9e-07 28.7 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261402917|ref|YP_003247141.1| - 6.9e-11 42.1 20.7 1.5e-08 34.6 10.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402917|ref|YP_003247141.1| - 4.6e-10 39.5 9.5 3.2e-05 24.0 1.2 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402917|ref|YP_003247141.1| - 4.8e-10 40.2 8.7 2.3e-05 25.2 1.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261402917|ref|YP_003247141.1| - 1.1e-09 37.7 12.2 2.2e-05 24.3 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|261402917|ref|YP_003247141.1| - 2.2e-06 27.7 13.5 0.0014 19.0 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402917|ref|YP_003247141.1| - 4.9e-06 26.9 21.0 9.4e-05 22.8 11.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261402917|ref|YP_003247141.1| - 5.9e-06 26.8 23.4 0.011 16.6 7.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261402917|ref|YP_003247141.1| - 4.1e-05 24.3 7.6 0.026 15.3 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261402917|ref|YP_003247141.1| - 0.00012 22.8 10.6 0.092 13.5 0.3 2.9 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|261402917|ref|YP_003247141.1| - 0.00018 22.0 10.9 0.0018 18.8 11.1 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261402917|ref|YP_003247141.1| - 0.00048 20.6 10.5 0.11 13.1 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I MTHFR_C PF12225.8 gi|261402917|ref|YP_003247141.1| - 0.012 15.2 3.8 0.18 11.5 0.5 2.2 2 0 0 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal Fer4_18 PF13746.6 gi|261402917|ref|YP_003247141.1| - 0.16 12.2 6.8 2.9 8.1 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261402918|ref|YP_003247142.1| - 2e-57 188.9 92.9 6.2e-09 35.3 2.4 8.3 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261402918|ref|YP_003247142.1| - 6.3e-40 135.6 101.5 1.6e-12 47.8 4.9 5.4 3 2 4 7 7 7 7 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261402918|ref|YP_003247142.1| - 2.7e-37 125.3 95.7 3.4e-06 26.9 2.3 8.5 9 0 0 9 9 8 8 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261402918|ref|YP_003247142.1| - 1.4e-30 106.0 67.0 1.9e-05 25.5 10.4 8.2 7 1 1 8 8 8 8 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261402918|ref|YP_003247142.1| - 5e-30 101.7 73.6 0.00011 22.1 1.6 8.5 8 0 0 8 8 8 8 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261402918|ref|YP_003247142.1| - 2.3e-29 101.3 71.3 3e-07 30.5 11.8 6.1 4 1 2 6 6 6 6 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261402918|ref|YP_003247142.1| - 6.1e-29 99.9 72.7 1e-07 31.9 11.4 7.2 3 1 4 7 7 7 7 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402918|ref|YP_003247142.1| - 4.2e-26 90.9 70.3 7.7e-08 32.4 9.8 6.4 1 1 5 7 7 7 7 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261402918|ref|YP_003247142.1| - 5.2e-15 54.6 83.3 0.014 15.8 4.7 8.5 8 1 0 8 8 8 6 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261402918|ref|YP_003247142.1| - 6.5e-14 52.1 74.1 3.3e-05 24.2 9.6 6.2 3 3 3 6 6 6 6 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261402918|ref|YP_003247142.1| - 9.1e-13 48.6 72.4 0.00034 21.1 12.8 7.7 4 3 3 7 7 7 5 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261402918|ref|YP_003247142.1| - 6.5e-05 23.7 67.9 0.053 14.4 0.1 8.1 5 3 4 9 9 9 5 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261402918|ref|YP_003247142.1| - 0.00014 22.5 67.1 0.11 13.3 0.3 9.3 8 2 0 8 8 8 5 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|261402918|ref|YP_003247142.1| - 0.00019 21.9 81.6 0.21 12.2 1.5 8.4 8 0 0 8 8 8 7 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|261402918|ref|YP_003247142.1| - 0.005 16.9 49.1 0.076 13.1 2.7 6.7 1 1 6 7 7 7 3 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|261402918|ref|YP_003247142.1| - 0.021 15.7 105.3 0.061 14.3 5.8 8.5 8 0 0 8 8 8 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261402918|ref|YP_003247142.1| - 0.17 12.1 68.1 1.5 9.0 3.0 8.1 4 2 4 8 8 8 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261402919|ref|YP_003247143.1| - 8.1e-09 34.9 4.9 4.6e-05 23.0 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261402919|ref|YP_003247143.1| - 3.3e-06 26.9 8.7 0.0025 17.8 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261402919|ref|YP_003247143.1| - 6.1e-05 22.9 7.0 0.0047 17.0 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261402919|ref|YP_003247143.1| - 0.00018 21.5 8.5 0.0012 19.0 0.7 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261402919|ref|YP_003247143.1| - 0.00022 21.3 8.1 0.006 16.7 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261402919|ref|YP_003247143.1| - 0.0013 18.9 10.2 0.015 15.5 10.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain HTH_3 PF01381.22 gi|261402919|ref|YP_003247143.1| - 0.0088 16.1 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|261402919|ref|YP_003247143.1| - 0.036 14.1 0.1 0.063 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|261402919|ref|YP_003247143.1| - 0.06 13.1 0.3 0.12 12.2 0.3 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fer4_7 PF12838.7 gi|261402919|ref|YP_003247143.1| - 0.07 13.7 12.3 2.2 8.9 12.4 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261402919|ref|YP_003247143.1| - 0.08 13.9 1.3 0.08 13.9 1.3 2.5 1 1 1 3 3 2 0 4Fe-4S double cluster binding domain DUF2250 PF10007.9 gi|261402919|ref|YP_003247143.1| - 0.1 12.7 0.2 13 6.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Fer4_13 PF13370.6 gi|261402919|ref|YP_003247143.1| - 0.13 12.8 7.7 2.7 8.6 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|261402919|ref|YP_003247143.1| - 0.17 12.3 13.9 1.2e+02 3.2 13.9 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261402919|ref|YP_003247143.1| - 0.29 12.0 9.5 3.6 8.5 3.2 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|261402919|ref|YP_003247143.1| - 0.55 10.4 4.6 2 8.6 0.7 2.2 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_4 PF12800.7 gi|261402919|ref|YP_003247143.1| - 0.69 10.6 16.7 0.29 11.8 2.8 2.6 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261402919|ref|YP_003247143.1| - 1.2 9.7 13.2 1 9.9 2.8 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain HTH_3 PF01381.22 gi|261402920|ref|YP_003247144.1| - 1.2e-13 50.9 0.1 5.4e-13 48.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|261402920|ref|YP_003247144.1| - 2.1e-06 27.7 0.0 1.8e-05 24.7 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|261402920|ref|YP_003247144.1| - 1.7e-05 25.1 0.0 3.6e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|261402920|ref|YP_003247144.1| - 0.0062 16.5 0.0 0.027 14.4 0.0 2.1 1 0 0 1 1 1 1 HTH domain HTH_26 PF13443.6 gi|261402920|ref|YP_003247144.1| - 0.04 14.4 0.0 0.19 12.2 0.0 2.2 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Spore_Cse60 PF10957.8 gi|261402920|ref|YP_003247144.1| - 0.058 13.4 0.1 0.22 11.6 0.1 2.1 1 0 0 1 1 1 0 Sporulation protein Cse60 HTH_7 PF02796.15 gi|261402920|ref|YP_003247144.1| - 0.059 13.5 0.1 0.2 11.8 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase NOD PF06816.13 gi|261402920|ref|YP_003247144.1| - 0.18 11.5 1.0 7.9 6.2 0.0 3.2 3 0 0 3 3 3 0 NOTCH protein SecD_SecF PF02355.16 gi|261402921|ref|YP_003247145.1| - 1.6e-49 167.9 14.8 2.2e-49 167.4 14.8 1.1 1 0 0 1 1 1 1 Protein export membrane protein Patched PF02460.18 gi|261402921|ref|YP_003247145.1| - 8.7e-06 24.1 9.7 1.3e-05 23.6 9.7 1.2 1 0 0 1 1 1 1 Patched family Sec_GG PF07549.14 gi|261402921|ref|YP_003247145.1| - 1.4e-05 24.4 0.1 2.7e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.19 gi|261402921|ref|YP_003247145.1| - 0.2 9.3 12.7 0.26 8.9 12.7 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family HTH_24 PF13412.6 gi|261402922|ref|YP_003247146.1| - 8.8e-10 38.0 0.2 2.4e-09 36.6 0.2 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|261402922|ref|YP_003247146.1| - 1.1e-06 28.5 0.1 3e-06 27.1 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|261402922|ref|YP_003247146.1| - 6.5e-06 25.9 0.0 1.4e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|261402922|ref|YP_003247146.1| - 7e-06 25.9 0.2 1.8e-05 24.6 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|261402922|ref|YP_003247146.1| - 5e-05 23.0 0.0 9.2e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|261402922|ref|YP_003247146.1| - 0.00025 20.9 0.0 0.00065 19.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_rep_O PF04492.13 gi|261402922|ref|YP_003247146.1| - 0.00038 21.0 0.5 0.00038 21.0 0.5 2.4 2 0 0 2 2 1 1 Bacteriophage replication protein O FAM76 PF16046.5 gi|261402922|ref|YP_003247146.1| - 0.00045 19.7 20.4 0.0054 16.1 11.3 2.2 1 1 1 2 2 2 2 FAM76 protein HAP1_N PF04849.13 gi|261402922|ref|YP_003247146.1| - 0.00089 18.5 22.6 0.0017 17.6 22.5 1.4 1 1 0 1 1 1 1 HAP1 N-terminal conserved region ERM PF00769.19 gi|261402922|ref|YP_003247146.1| - 0.0024 17.7 7.7 0.0024 17.7 7.7 1.8 1 1 0 1 1 1 1 Ezrin/radixin/moesin family Fez1 PF06818.15 gi|261402922|ref|YP_003247146.1| - 0.0027 18.2 16.1 0.0027 18.2 16.1 1.8 1 1 0 1 1 1 1 Fez1 MAD PF05557.13 gi|261402922|ref|YP_003247146.1| - 0.0028 16.1 20.2 0.0039 15.7 20.2 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein SYCE1 PF15233.6 gi|261402922|ref|YP_003247146.1| - 0.0031 17.6 21.6 0.042 13.9 6.5 2.3 1 1 1 2 2 2 1 Synaptonemal complex central element protein 1 GIT_CC PF16559.5 gi|261402922|ref|YP_003247146.1| - 0.004 17.0 1.9 0.004 17.0 1.9 2.5 2 0 0 2 2 2 1 GIT coiled-coil Rho guanine nucleotide exchange factor HemX PF04375.14 gi|261402922|ref|YP_003247146.1| - 0.0058 16.0 7.7 0.017 14.4 0.6 2.1 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase Spectrin PF00435.21 gi|261402922|ref|YP_003247146.1| - 0.0087 16.5 15.3 0.06 13.8 4.4 2.4 1 1 1 2 2 2 1 Spectrin repeat ATG16 PF08614.11 gi|261402922|ref|YP_003247146.1| - 0.0094 16.2 20.4 0.053 13.7 12.7 2.2 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) DUF1043 PF06295.12 gi|261402922|ref|YP_003247146.1| - 0.024 14.6 11.5 0.45 10.5 11.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1043) Sigma70_r4 PF04545.16 gi|261402922|ref|YP_003247146.1| - 0.024 14.1 0.0 0.074 12.6 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 SlyX PF04102.12 gi|261402922|ref|YP_003247146.1| - 0.03 14.9 13.7 0.8 10.4 1.0 3.5 1 1 2 3 3 3 0 SlyX HTH_DeoR PF08220.12 gi|261402922|ref|YP_003247146.1| - 0.032 14.0 0.2 0.075 12.8 0.2 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain ADIP PF11559.8 gi|261402922|ref|YP_003247146.1| - 0.034 14.2 24.6 0.65 10.1 8.6 2.7 2 1 1 3 3 2 0 Afadin- and alpha -actinin-Binding Mod_r PF07200.13 gi|261402922|ref|YP_003247146.1| - 0.036 14.2 23.5 0.36 10.9 8.7 2.3 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein TMPIT PF07851.13 gi|261402922|ref|YP_003247146.1| - 0.039 13.2 19.0 0.015 14.6 4.7 2.2 1 1 1 2 2 2 0 TMPIT-like protein HTH_37 PF13744.6 gi|261402922|ref|YP_003247146.1| - 0.041 13.9 0.1 0.041 13.9 0.1 2.5 2 1 0 2 2 1 0 Helix-turn-helix domain Acetyltransf_16 PF05301.11 gi|261402922|ref|YP_003247146.1| - 0.049 13.4 3.8 0.062 13.1 2.2 2.0 1 1 0 1 1 1 0 GNAT acetyltransferase, Mec-17 HMMR_N PF15905.5 gi|261402922|ref|YP_003247146.1| - 0.055 12.9 26.7 0.15 11.5 26.7 1.6 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF977 PF06163.11 gi|261402922|ref|YP_003247146.1| - 0.063 13.2 0.2 0.23 11.4 0.2 1.9 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Leu_zip PF15294.6 gi|261402922|ref|YP_003247146.1| - 0.074 12.6 26.3 0.44 10.0 14.0 2.5 1 1 2 3 3 2 0 Leucine zipper UPF0242 PF06785.11 gi|261402922|ref|YP_003247146.1| - 0.081 13.0 24.7 0.13 12.4 10.0 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Rio2_N PF09202.11 gi|261402922|ref|YP_003247146.1| - 0.093 13.0 0.2 0.69 10.2 0.2 2.5 2 0 0 2 2 1 0 Rio2, N-terminal HTH_29 PF13551.6 gi|261402922|ref|YP_003247146.1| - 0.1 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HrpB7 PF09486.10 gi|261402922|ref|YP_003247146.1| - 0.11 12.9 2.0 0.17 12.3 2.0 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) HAUS-augmin3 PF14932.6 gi|261402922|ref|YP_003247146.1| - 0.11 12.1 18.5 0.45 10.1 7.6 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 BRE1 PF08647.11 gi|261402922|ref|YP_003247146.1| - 0.13 12.4 25.5 0.027 14.5 10.3 2.9 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase BLOC1_2 PF10046.9 gi|261402922|ref|YP_003247146.1| - 0.13 12.5 21.6 0.57 10.5 9.7 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|261402922|ref|YP_003247146.1| - 0.14 12.5 8.2 0.59 10.4 1.5 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|261402922|ref|YP_003247146.1| - 0.14 11.0 26.7 0.28 10.0 11.5 2.1 1 1 0 1 1 1 0 Spc7 kinetochore protein Rootletin PF15035.6 gi|261402922|ref|YP_003247146.1| - 0.15 12.1 15.7 0.75 9.8 15.7 1.9 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TolA_bind_tri PF16331.5 gi|261402922|ref|YP_003247146.1| - 0.15 12.2 7.6 1.1 9.4 1.4 2.4 2 0 0 2 2 2 0 TolA binding protein trimerisation SHE3 PF17078.5 gi|261402922|ref|YP_003247146.1| - 0.16 11.7 24.5 0.02 14.7 20.0 1.8 2 0 0 2 2 1 0 SWI5-dependent HO expression protein 3 DUF5082 PF16888.5 gi|261402922|ref|YP_003247146.1| - 0.18 12.1 28.0 2.7 8.3 8.1 3.7 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) HHH_5 PF14520.6 gi|261402922|ref|YP_003247146.1| - 0.18 12.4 2.6 1.2 9.8 0.2 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain KASH_CCD PF14662.6 gi|261402922|ref|YP_003247146.1| - 0.19 11.5 25.8 0.4 10.5 20.9 2.4 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH TPR_MLP1_2 PF07926.12 gi|261402922|ref|YP_003247146.1| - 0.24 11.5 20.3 1.6 8.8 7.6 2.6 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DivIC PF04977.15 gi|261402922|ref|YP_003247146.1| - 0.31 10.8 25.9 0.047 13.5 6.4 4.1 1 1 2 3 3 3 0 Septum formation initiator MscS_porin PF12795.7 gi|261402922|ref|YP_003247146.1| - 0.33 10.5 18.6 0.51 9.8 3.4 2.2 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain ZapB PF06005.12 gi|261402922|ref|YP_003247146.1| - 0.34 11.4 27.2 0.13 12.7 7.4 3.2 1 1 2 3 3 3 0 Cell division protein ZapB TSC22 PF01166.18 gi|261402922|ref|YP_003247146.1| - 0.53 10.6 25.0 0.13 12.6 2.1 5.2 2 1 2 5 5 5 0 TSC-22/dip/bun family TMF_DNA_bd PF12329.8 gi|261402922|ref|YP_003247146.1| - 0.56 10.2 35.0 0.25 11.4 12.7 3.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding APG6_N PF17675.1 gi|261402922|ref|YP_003247146.1| - 0.58 10.7 24.6 1.2 9.7 6.4 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF3450 PF11932.8 gi|261402922|ref|YP_003247146.1| - 0.59 9.4 15.0 0.28 10.4 3.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Cep57_CLD_2 PF14197.6 gi|261402922|ref|YP_003247146.1| - 0.69 10.0 21.5 0.086 12.9 4.0 3.2 1 1 2 3 3 3 0 Centrosome localisation domain of PPC89 Jnk-SapK_ap_N PF09744.9 gi|261402922|ref|YP_003247146.1| - 0.7 10.1 22.7 1.4 9.2 5.3 2.3 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 DUF4200 PF13863.6 gi|261402922|ref|YP_003247146.1| - 0.78 10.2 32.3 0.16 12.3 19.3 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF4200) DUF724 PF05266.14 gi|261402922|ref|YP_003247146.1| - 0.84 9.4 22.3 0.91 9.3 12.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Seryl_tRNA_N PF02403.22 gi|261402922|ref|YP_003247146.1| - 0.85 9.9 27.7 1.5 9.0 6.1 2.9 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain LRRFIP PF09738.9 gi|261402922|ref|YP_003247146.1| - 0.88 9.0 24.1 2.8 7.3 24.1 1.8 1 1 0 1 1 1 0 LRRFIP family Spc24 PF08286.11 gi|261402922|ref|YP_003247146.1| - 0.93 9.8 24.4 3.7 7.8 4.0 3.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 PHM7_cyt PF14703.6 gi|261402922|ref|YP_003247146.1| - 0.94 9.7 12.0 2.3 8.4 12.0 1.7 1 0 0 1 1 1 0 Cytosolic domain of 10TM putative phosphate transporter Tropomyosin_1 PF12718.7 gi|261402922|ref|YP_003247146.1| - 1.3 9.2 24.9 39 4.4 24.6 2.2 1 1 0 1 1 1 0 Tropomyosin like BST2 PF16716.5 gi|261402922|ref|YP_003247146.1| - 1.3 9.7 18.5 0.36 11.4 7.8 2.5 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 DUF4472 PF14739.6 gi|261402922|ref|YP_003247146.1| - 1.6 9.5 20.0 2.5 8.9 9.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) HiaBD2 PF15403.6 gi|261402922|ref|YP_003247146.1| - 1.6 9.1 4.9 0.64 10.5 0.2 2.5 2 0 0 2 2 1 0 HiaBD2_N domain of Trimeric autotransporter adhesin (GIN) Sec34 PF04136.15 gi|261402922|ref|YP_003247146.1| - 1.9 8.4 19.1 0.52 10.2 4.6 2.5 2 1 1 3 3 2 0 Sec34-like family SSXT PF05030.12 gi|261402922|ref|YP_003247146.1| - 2 8.1 9.1 0.12 12.0 3.1 2.2 2 0 0 2 2 1 0 SSXT protein (N-terminal region) DUF16 PF01519.16 gi|261402922|ref|YP_003247146.1| - 2 8.9 21.6 2.3 8.7 9.9 2.9 1 1 2 3 3 2 0 Protein of unknown function DUF16 DHR10 PF18595.1 gi|261402922|ref|YP_003247146.1| - 2.1 8.4 19.9 2 8.5 9.6 2.5 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain DUF1465 PF07323.12 gi|261402922|ref|YP_003247146.1| - 2.1 8.2 8.4 2.3 8.1 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) DUF2203 PF09969.9 gi|261402922|ref|YP_003247146.1| - 2.2 9.0 11.8 1.2 9.9 2.9 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Csm1_N PF18504.1 gi|261402922|ref|YP_003247146.1| - 2.4 8.5 23.0 1.6 9.1 5.7 3.4 2 1 1 3 3 3 0 Csm1 N-terminal domain zf-C4H2 PF10146.9 gi|261402922|ref|YP_003247146.1| - 2.5 8.4 19.2 4.2 7.6 19.2 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein DivIVA PF05103.13 gi|261402922|ref|YP_003247146.1| - 2.7 8.1 22.7 0.24 11.5 8.2 3.2 1 1 2 3 3 3 0 DivIVA protein Prefoldin_2 PF01920.20 gi|261402922|ref|YP_003247146.1| - 2.7 8.0 24.7 16 5.5 5.8 3.4 1 1 2 3 3 3 0 Prefoldin subunit Tup_N PF08581.10 gi|261402922|ref|YP_003247146.1| - 2.7 8.3 16.7 0.32 11.3 5.0 2.8 1 1 1 2 2 2 0 Tup N-terminal FliD_N PF02465.18 gi|261402922|ref|YP_003247146.1| - 3 8.6 15.9 0.23 12.2 4.6 2.9 2 1 1 3 3 2 0 Flagellar hook-associated protein 2 N-terminus GLE1 PF07817.13 gi|261402922|ref|YP_003247146.1| - 3.1 6.9 15.7 3.2 6.9 3.8 2.2 1 1 1 2 2 2 0 GLE1-like protein Penicillinase_R PF03965.16 gi|261402922|ref|YP_003247146.1| - 3.3 8.1 9.5 0.17 12.2 0.8 2.8 3 0 0 3 3 2 0 Penicillinase repressor Mnd1 PF03962.15 gi|261402922|ref|YP_003247146.1| - 3.3 8.1 7.0 0.99 9.7 0.6 3.0 2 1 1 3 3 2 0 Mnd1 HTH domain Shugoshin_N PF07558.11 gi|261402922|ref|YP_003247146.1| - 3.9 7.4 20.8 0.31 10.9 1.9 4.8 3 1 1 4 4 4 0 Shugoshin N-terminal coiled-coil region DASH_Dam1 PF08653.10 gi|261402922|ref|YP_003247146.1| - 4.4 7.2 4.9 47 3.9 0.2 3.2 2 1 1 3 3 3 0 DASH complex subunit Dam1 YabA PF06156.13 gi|261402922|ref|YP_003247146.1| - 5.2 7.8 21.1 0.19 12.4 5.2 3.0 2 1 1 3 3 2 0 Initiation control protein YabA Atg14 PF10186.9 gi|261402922|ref|YP_003247146.1| - 5.2 6.0 25.4 4 6.4 11.5 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 CCDC85 PF10226.9 gi|261402922|ref|YP_003247146.1| - 5.4 6.7 14.7 4.3e+02 0.5 14.7 2.4 1 1 0 1 1 1 0 CCDC85 family DUF1664 PF07889.12 gi|261402922|ref|YP_003247146.1| - 5.5 7.1 16.2 4.8 7.2 9.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) LPP PF04728.13 gi|261402922|ref|YP_003247146.1| - 6.7 7.2 10.7 12 6.3 0.4 3.6 2 1 0 2 2 2 0 Lipoprotein leucine-zipper Uso1_p115_C PF04871.13 gi|261402922|ref|YP_003247146.1| - 6.7 7.1 20.7 0.4 11.1 2.4 2.3 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4094 PF13334.6 gi|261402922|ref|YP_003247146.1| - 7.6 7.0 9.6 4.5 7.8 2.1 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) DUF4140 PF13600.6 gi|261402922|ref|YP_003247146.1| - 8.4 6.9 13.0 11 6.5 1.0 3.7 2 1 2 4 4 3 0 N-terminal domain of unknown function (DUF4140) Pox_A_type_inc PF04508.12 gi|261402922|ref|YP_003247146.1| - 8.5 6.4 9.2 2.7 8.0 0.3 4.0 4 0 0 4 4 2 0 Viral A-type inclusion protein repeat PCRF PF03462.18 gi|261402922|ref|YP_003247146.1| - 9.2 6.1 14.1 12 5.7 12.3 1.9 1 1 1 2 2 2 0 PCRF domain YvrJ PF12841.7 gi|261402922|ref|YP_003247146.1| - 9.9 5.8 9.8 5.2 6.7 0.1 3.8 3 0 0 3 3 3 0 YvrJ protein family Glyco_tran_28_C PF04101.16 gi|261402924|ref|YP_003247148.1| - 6.6e-26 91.3 0.1 1.2e-25 90.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 gi|261402924|ref|YP_003247148.1| - 4.8e-20 72.1 0.0 1.9e-12 47.1 0.0 2.5 3 0 0 3 3 3 2 Glycosyl transferase family 1 UDPGT PF00201.18 gi|261402924|ref|YP_003247148.1| - 2.4e-07 30.0 0.0 4.9e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucoronosyl and UDP-glucosyl transferase Glyco_transf_28 PF03033.20 gi|261402924|ref|YP_003247148.1| - 0.00033 20.7 0.1 0.0049 16.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain KH_5 PF13184.6 gi|261402924|ref|YP_003247148.1| - 0.057 13.5 1.5 0.11 12.6 0.1 2.2 3 0 0 3 3 3 0 NusA-like KH domain PS_pyruv_trans PF04230.13 gi|261402924|ref|YP_003247148.1| - 0.074 13.0 0.0 0.074 13.0 0.0 3.2 2 1 1 3 3 3 0 Polysaccharide pyruvyl transferase Glyco_transf_4 PF13439.6 gi|261402924|ref|YP_003247148.1| - 0.11 12.5 0.0 0.99 9.4 0.0 2.4 3 0 0 3 3 3 0 Glycosyltransferase Family 4 UPF0052 PF01933.18 gi|261402925|ref|YP_003247149.1| - 2.2e-47 161.7 0.2 2.7e-47 161.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 THUMP PF02926.17 gi|261402926|ref|YP_003247150.1| - 4.1e-25 88.5 8.0 4.1e-25 88.5 8.0 1.9 2 0 0 2 2 2 1 THUMP domain FtsJ PF01728.19 gi|261402926|ref|YP_003247150.1| - 4e-09 36.8 0.0 7.8e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|261402926|ref|YP_003247150.1| - 2.5e-05 24.2 0.0 4.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CBFD_NFYB_HMF PF00808.23 gi|261402927|ref|YP_003247151.1| - 5.8e-18 64.9 1.9 6.4e-18 64.8 1.9 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|261402927|ref|YP_003247151.1| - 2.4e-08 34.4 0.1 2.5e-08 34.4 0.1 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|261402927|ref|YP_003247151.1| - 4.7e-06 26.7 0.7 5.4e-06 26.5 0.7 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|261402927|ref|YP_003247151.1| - 2.9e-05 24.3 0.0 3.2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|261402927|ref|YP_003247151.1| - 0.00032 20.7 0.0 0.00035 20.7 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID_20kDa PF03847.13 gi|261402927|ref|YP_003247151.1| - 0.00037 20.9 0.1 0.0004 20.8 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A CENP-T_C PF15511.6 gi|261402927|ref|YP_003247151.1| - 0.001 19.2 0.0 0.0012 18.9 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold Bromo_TP PF07524.13 gi|261402927|ref|YP_003247151.1| - 0.0033 17.4 0.0 0.0036 17.3 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated TFIID-18kDa PF02269.16 gi|261402927|ref|YP_003247151.1| - 0.0098 15.9 0.1 0.011 15.7 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit Ribonuc_red_lgC PF02867.15 gi|261402927|ref|YP_003247151.1| - 0.085 11.4 0.1 0.085 11.4 0.1 1.0 1 0 0 1 1 1 0 Ribonucleotide reductase, barrel domain AA_kinase PF00696.28 gi|261402928|ref|YP_003247152.1| - 2.3e-33 115.8 1.2 3.1e-33 115.4 1.2 1.2 1 0 0 1 1 1 1 Amino acid kinase family Mur_ligase_C PF02875.21 gi|261402928|ref|YP_003247152.1| - 0.006 16.8 0.0 4.5 7.6 0.0 2.8 2 1 0 2 2 2 2 Mur ligase family, glutamate ligase domain DUF2116 PF09889.9 gi|261402929|ref|YP_003247153.1| - 4.3e-22 77.9 1.1 4.9e-22 77.7 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc_ribbon_2 PF13240.6 gi|261402929|ref|YP_003247153.1| - 0.0016 18.1 0.5 0.0025 17.4 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF5345 PF17280.2 gi|261402929|ref|YP_003247153.1| - 0.016 15.1 0.0 0.017 15.1 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5345) DZR PF12773.7 gi|261402929|ref|YP_003247153.1| - 0.035 14.1 0.6 0.043 13.8 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon NinF PF05810.12 gi|261402929|ref|YP_003247153.1| - 0.039 13.8 0.2 0.052 13.4 0.2 1.2 1 0 0 1 1 1 0 NinF protein zf-FLZ PF04570.14 gi|261402929|ref|YP_003247153.1| - 0.099 12.1 3.6 0.21 11.1 3.6 1.7 1 1 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 zf-FCS PF06467.14 gi|261402929|ref|YP_003247153.1| - 0.2 11.6 0.5 0.2 11.6 0.5 1.9 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Ecl1 PF12855.7 gi|261402929|ref|YP_003247153.1| - 0.49 11.6 1.7 0.52 11.5 1.7 1.1 1 0 0 1 1 1 0 ECL1/2/3 zinc binding proteins Ribosomal_S6e PF01092.19 gi|261402930|ref|YP_003247154.1| - 9.5e-44 148.4 0.1 1.1e-43 148.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e eIF2_C PF09173.11 gi|261402931|ref|YP_003247155.1| - 1.1e-33 115.3 0.2 2.4e-33 114.2 0.2 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|261402931|ref|YP_003247155.1| - 1.8e-31 109.2 0.3 1.2e-30 106.5 0.3 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|261402931|ref|YP_003247155.1| - 8.6e-09 35.7 0.8 2.4e-08 34.2 0.8 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|261402931|ref|YP_003247155.1| - 5.6e-06 26.4 1.2 5.2e-05 23.2 0.2 2.3 1 1 1 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|261402931|ref|YP_003247155.1| - 0.00027 21.0 0.0 0.00073 19.6 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|261402931|ref|YP_003247155.1| - 0.00032 20.7 0.3 0.00066 19.7 0.3 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Nop10p PF04135.12 gi|261402931|ref|YP_003247155.1| - 0.00054 19.9 2.9 0.0011 18.9 2.9 1.5 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|261402931|ref|YP_003247155.1| - 0.0017 17.9 2.8 0.0051 16.3 2.8 1.8 1 0 0 1 1 1 1 RecR protein PduV-EutP PF10662.9 gi|261402931|ref|YP_003247155.1| - 0.0033 17.2 0.2 1.9 8.2 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation PolC_DP2 PF03833.13 gi|261402931|ref|YP_003247155.1| - 0.012 13.6 0.0 0.013 13.4 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 FeoB_N PF02421.18 gi|261402931|ref|YP_003247155.1| - 0.014 15.0 1.0 1.2 8.6 0.2 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B DUF35_N PF12172.8 gi|261402931|ref|YP_003247155.1| - 0.12 12.3 2.4 0.22 11.5 2.4 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.12 gi|261402931|ref|YP_003247155.1| - 0.19 11.7 1.0 3.9 7.5 0.0 2.6 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-tcix PF14952.6 gi|261402931|ref|YP_003247155.1| - 0.4 10.3 7.0 1.4 8.6 7.0 1.8 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding NurA PF09376.10 gi|261402932|ref|YP_003247156.1| - 1.9e-36 126.0 3.4 2.5e-36 125.6 3.4 1.1 1 0 0 1 1 1 1 NurA domain Annexin PF00191.20 gi|261402932|ref|YP_003247156.1| - 0.0074 16.3 2.2 0.074 13.1 0.2 3.0 3 0 0 3 3 3 1 Annexin tRNA-synt_1g PF09334.11 gi|261402933|ref|YP_003247157.1| - 1.9e-161 537.2 0.6 2.6e-161 536.7 0.6 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|261402933|ref|YP_003247157.1| - 1.1e-33 115.2 1.2 2e-33 114.3 1.2 1.5 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|261402933|ref|YP_003247157.1| - 9.8e-28 96.7 3.0 1.8e-10 39.8 0.1 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|261402933|ref|YP_003247157.1| - 2.6e-16 59.8 1.3 7.9e-09 35.3 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|261402933|ref|YP_003247157.1| - 1.4e-08 34.9 3.3 4e-08 33.4 3.3 1.9 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|261402933|ref|YP_003247157.1| - 0.009 15.0 0.1 0.11 11.4 0.1 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.7 gi|261402933|ref|YP_003247157.1| - 0.15 12.1 7.5 0.35 10.9 7.5 1.7 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|261402933|ref|YP_003247157.1| - 0.63 10.1 5.6 3 7.9 5.6 2.1 1 1 0 1 1 1 0 zinc-ribbons DUF1610 PF07754.11 gi|261402933|ref|YP_003247157.1| - 1 9.4 4.5 13 5.9 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) LUC7 PF03194.15 gi|261402933|ref|YP_003247157.1| - 1.1 8.8 10.7 0.044 13.5 1.4 2.9 3 0 0 3 3 3 0 LUC7 N_terminus DUF1272 PF06906.11 gi|261402933|ref|YP_003247157.1| - 3 8.0 7.7 1.3 9.2 1.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.6 gi|261402933|ref|YP_003247157.1| - 3.2 7.7 6.5 6.2 6.8 0.5 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PHP_C PF13263.6 gi|261402934|ref|YP_003247158.1| - 8.4e-11 41.5 0.0 1.8e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 PHP-associated T2SSG PF08334.11 gi|261402934|ref|YP_003247158.1| - 0.18 11.9 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein G zf-ribbon_3 PF13248.6 gi|261402935|ref|YP_003247159.1| - 4.6e-21 73.5 22.7 2.9e-09 36.0 1.2 3.2 3 0 0 3 3 3 3 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|261402935|ref|YP_003247159.1| - 8.4e-19 66.7 17.6 2.9e-06 26.8 0.7 3.3 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.7 gi|261402935|ref|YP_003247159.1| - 2.5e-18 65.8 15.2 4.4e-12 45.8 10.2 2.2 2 0 0 2 2 2 2 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|261402935|ref|YP_003247159.1| - 9.7e-11 42.3 11.3 0.0053 17.5 0.4 3.2 3 0 0 3 3 3 3 zinc-ribbon family UPF0547 PF10571.9 gi|261402935|ref|YP_003247159.1| - 4.6e-06 26.6 15.3 0.0032 17.5 2.1 3.3 3 0 0 3 3 3 2 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|261402935|ref|YP_003247159.1| - 0.0002 21.2 15.5 0.019 14.9 2.2 3.6 2 1 1 4 4 4 2 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.14 gi|261402935|ref|YP_003247159.1| - 0.00035 20.4 6.2 1.4 8.9 0.0 4.6 4 0 0 4 4 4 1 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.13 gi|261402935|ref|YP_003247159.1| - 0.00054 19.6 20.8 0.011 15.4 2.5 4.0 2 2 2 4 4 4 2 DNA directed RNA polymerase, 7 kDa subunit DUF4734 PF15881.5 gi|261402935|ref|YP_003247159.1| - 0.0036 17.4 0.3 0.008 16.3 0.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4734) Zn-ribbon_8 PF09723.10 gi|261402935|ref|YP_003247159.1| - 0.01 16.0 20.1 0.04 14.0 2.0 4.6 2 1 3 5 5 5 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|261402935|ref|YP_003247159.1| - 0.011 15.7 3.4 0.011 15.7 3.4 4.0 4 1 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain C1_1 PF00130.22 gi|261402935|ref|YP_003247159.1| - 0.014 15.3 17.7 0.021 14.7 1.9 3.3 2 1 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C3HC4_3 PF13920.6 gi|261402935|ref|YP_003247159.1| - 0.016 15.1 20.3 0.27 11.1 2.6 3.9 3 1 1 4 4 4 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.6 gi|261402935|ref|YP_003247159.1| - 0.019 14.9 18.4 0.025 14.5 1.4 3.8 1 1 2 4 4 4 0 Prokaryotic RING finger family 1 TackOD1 PF18551.1 gi|261402935|ref|YP_003247159.1| - 0.032 13.9 13.8 4.3 7.0 13.8 2.6 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 DUF1451 PF07295.11 gi|261402935|ref|YP_003247159.1| - 0.034 14.2 1.3 0.034 14.2 1.3 2.9 1 1 2 3 3 3 0 Zinc-ribbon containing domain zinc-ribbon_6 PF10005.9 gi|261402935|ref|YP_003247159.1| - 0.057 14.1 10.6 3.6 8.3 1.3 3.3 2 1 1 3 3 3 0 zinc-ribbon domain tRNA-synt_1g PF09334.11 gi|261402935|ref|YP_003247159.1| - 0.076 11.8 1.0 0.099 11.4 1.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (M) HypA PF01155.19 gi|261402935|ref|YP_003247159.1| - 0.16 12.0 17.9 2.4 8.2 5.6 3.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|261402935|ref|YP_003247159.1| - 0.55 10.5 23.7 1 9.6 0.7 5.6 4 2 2 6 6 6 0 C4-type zinc ribbon domain zf-RING_4 PF14570.6 gi|261402935|ref|YP_003247159.1| - 0.58 10.0 22.3 0.065 13.0 2.4 3.2 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain Terminase_GpA PF05876.12 gi|261402935|ref|YP_003247159.1| - 0.71 8.4 7.5 1.1 7.8 7.5 1.3 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-NADH-PPase PF09297.11 gi|261402935|ref|YP_003247159.1| - 1 9.0 20.5 0.19 11.4 2.5 4.8 5 1 0 5 5 5 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L32p PF01783.23 gi|261402935|ref|YP_003247159.1| - 1.2 9.4 14.3 0.25 11.6 2.2 3.4 1 1 2 3 3 3 0 Ribosomal L32p protein family Sgf11 PF08209.11 gi|261402935|ref|YP_003247159.1| - 1.9 8.1 21.5 0.15 11.7 0.9 4.7 3 2 2 5 5 5 0 Sgf11 (transcriptional regulation protein) Mut7-C PF01927.16 gi|261402935|ref|YP_003247159.1| - 1.9 8.6 13.3 3.9 7.6 5.5 2.8 1 1 1 2 2 2 0 Mut7-C RNAse domain Nudix_N_2 PF14803.6 gi|261402935|ref|YP_003247159.1| - 3.4 7.6 23.4 9.6 6.2 3.5 5.4 4 2 0 4 4 4 0 Nudix N-terminal DHHC PF01529.20 gi|261402935|ref|YP_003247159.1| - 4.9 7.3 15.5 0.67 10.1 3.4 3.1 2 1 1 3 3 3 0 DHHC palmitoyltransferase zf-Di19 PF05605.12 gi|261402935|ref|YP_003247159.1| - 5.4 7.4 13.0 7.8 6.9 5.3 2.7 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF2116 PF09889.9 gi|261402935|ref|YP_003247159.1| - 7.3 6.7 17.0 3.8 7.6 0.2 3.7 4 0 0 4 4 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf_UBZ PF18439.1 gi|261402935|ref|YP_003247159.1| - 7.4 6.3 21.5 13 5.5 0.1 5.7 4 2 2 6 6 6 0 Ubiquitin-Binding Zinc Finger zf-LITAF-like PF10601.9 gi|261402935|ref|YP_003247159.1| - 7.8 6.8 23.9 41 4.5 0.3 5.2 1 1 2 3 3 2 0 LITAF-like zinc ribbon domain ProRS-C_1 PF09180.11 gi|261402935|ref|YP_003247159.1| - 9.9 6.5 11.7 89 3.4 11.7 2.4 1 1 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal Lig_C PF18330.1 gi|261402937|ref|YP_003247161.1| - 1.3e-37 128.6 1.3 3e-37 127.4 1.3 1.7 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|261402937|ref|YP_003247161.1| - 2.6e-20 73.4 0.3 8.9e-20 71.6 0.1 1.8 2 0 0 2 2 2 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|261402937|ref|YP_003247161.1| - 7.6e-05 22.4 0.1 0.00028 20.6 0.1 1.9 1 1 0 1 1 1 1 ATP dependent DNA ligase domain BPD_transp_1 PF00528.22 gi|261402938|ref|YP_003247162.1| - 5e-26 91.6 14.6 5e-26 91.6 14.6 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|261402939|ref|YP_003247163.1| - 2.3e-32 112.4 0.0 3.4e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261402939|ref|YP_003247163.1| - 3.1e-08 33.8 0.0 0.0048 16.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|261402939|ref|YP_003247163.1| - 2.4e-06 28.0 0.4 2e-05 25.0 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|261402939|ref|YP_003247163.1| - 5.7e-05 23.1 0.2 0.00094 19.2 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea SMC_N PF02463.19 gi|261402939|ref|YP_003247163.1| - 0.00024 20.6 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|261402939|ref|YP_003247163.1| - 0.00057 19.9 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|261402939|ref|YP_003247163.1| - 0.0006 19.6 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|261402939|ref|YP_003247163.1| - 0.00078 19.7 0.0 0.0019 18.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|261402939|ref|YP_003247163.1| - 0.0025 17.8 0.0 0.0044 16.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|261402939|ref|YP_003247163.1| - 0.0033 17.8 0.1 0.0054 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|261402939|ref|YP_003247163.1| - 0.014 15.6 0.1 0.29 11.3 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|261402939|ref|YP_003247163.1| - 0.015 14.0 0.0 1.7 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|261402939|ref|YP_003247163.1| - 0.017 15.1 0.3 0.42 10.6 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_18 PF13238.6 gi|261402939|ref|YP_003247163.1| - 0.018 15.6 0.5 0.75 10.3 0.2 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|261402939|ref|YP_003247163.1| - 0.026 14.9 0.1 1.4 9.2 0.0 2.8 2 1 1 3 3 3 0 AAA domain NACHT PF05729.12 gi|261402939|ref|YP_003247163.1| - 0.027 14.4 0.2 0.13 12.1 0.1 2.1 2 0 0 2 2 2 0 NACHT domain T2SSE PF00437.20 gi|261402939|ref|YP_003247163.1| - 0.03 13.4 0.0 0.049 12.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|261402939|ref|YP_003247163.1| - 0.052 12.7 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|261402939|ref|YP_003247163.1| - 0.059 13.1 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|261402939|ref|YP_003247163.1| - 0.087 12.6 0.0 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.6 gi|261402939|ref|YP_003247163.1| - 0.098 13.1 0.1 0.098 13.1 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|261402939|ref|YP_003247163.1| - 0.12 12.2 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|261402939|ref|YP_003247163.1| - 0.14 12.4 0.1 0.36 11.1 0.1 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit His_biosynth PF00977.21 gi|261402940|ref|YP_003247164.1| - 4.2e-91 304.5 1.4 5e-91 304.2 1.4 1.1 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|261402940|ref|YP_003247164.1| - 9e-07 28.6 0.1 0.002 17.6 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase Dus PF01207.17 gi|261402940|ref|YP_003247164.1| - 7.2e-06 25.3 0.0 0.0015 17.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|261402940|ref|YP_003247164.1| - 8.1e-05 22.0 0.3 0.022 14.1 0.1 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|261402940|ref|YP_003247164.1| - 0.00013 21.4 0.3 0.048 13.1 0.1 2.4 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|261402940|ref|YP_003247164.1| - 0.00024 20.5 0.1 0.42 9.9 0.1 2.4 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|261402940|ref|YP_003247164.1| - 0.013 14.6 0.3 3.1 6.7 0.0 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|261402940|ref|YP_003247164.1| - 0.015 14.6 0.2 0.3 10.2 0.0 2.1 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|261402940|ref|YP_003247164.1| - 0.026 14.0 0.4 0.2 11.1 0.0 2.2 2 0 0 2 2 2 0 PcrB family DUF1958 PF09211.10 gi|261402940|ref|YP_003247164.1| - 0.034 14.5 0.1 1 9.8 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1958) SAP PF02037.27 gi|261402940|ref|YP_003247164.1| - 0.17 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 SAP domain CbiA PF01656.23 gi|261402941|ref|YP_003247165.1| - 3.5e-15 56.2 0.0 7.8e-15 55.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|261402941|ref|YP_003247165.1| - 8.6e-15 55.1 0.0 1.6e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|261402941|ref|YP_003247165.1| - 1.2e-10 41.3 0.4 1.4e-09 37.8 0.2 2.4 1 1 1 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|261402941|ref|YP_003247165.1| - 0.00023 20.4 2.2 0.025 13.8 0.0 3.1 3 0 0 3 3 3 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|261402941|ref|YP_003247165.1| - 0.00054 19.5 2.1 0.18 11.2 0.2 2.6 2 1 1 3 3 3 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|261402941|ref|YP_003247165.1| - 0.0012 18.4 0.0 0.012 15.1 0.0 2.2 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|261402941|ref|YP_003247165.1| - 0.0026 17.1 0.0 0.0046 16.3 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|261402941|ref|YP_003247165.1| - 0.023 14.5 1.2 0.039 13.8 0.2 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|261402941|ref|YP_003247165.1| - 0.16 11.6 0.2 0.55 9.8 0.1 1.9 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain DHNA PF04038.12 gi|261402943|ref|YP_003247167.1| - 1.5e-37 128.4 0.1 2.1e-37 128.0 0.1 1.2 1 0 0 1 1 1 1 Dihydroneopterin aldolase NadA PF02445.16 gi|261402944|ref|YP_003247168.1| - 6.1e-110 367.1 1.9 6.9e-110 366.9 1.9 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein PS_pyruv_trans PF04230.13 gi|261402944|ref|YP_003247168.1| - 0.056 13.4 0.2 0.13 12.2 0.1 1.6 2 0 0 2 2 2 0 Polysaccharide pyruvyl transferase DUF3627 PF12299.8 gi|261402944|ref|YP_003247168.1| - 0.077 13.1 3.2 4 7.6 0.1 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF3627) DOPA_dioxygen PF08883.11 gi|261402944|ref|YP_003247168.1| - 0.12 12.6 0.1 0.33 11.2 0.1 1.7 1 0 0 1 1 1 0 Dopa 4,5-dioxygenase family Hydrolase PF00702.26 gi|261402944|ref|YP_003247168.1| - 0.16 12.2 0.3 0.85 9.9 0.0 2.1 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase PfkB PF00294.24 gi|261402945|ref|YP_003247169.1| - 4.1e-61 206.9 0.0 4.6e-61 206.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF2111 PF09884.9 gi|261402946|ref|YP_003247170.1| - 9.8e-34 115.3 2.8 1.2e-33 115.0 2.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) DUF2112 PF09885.9 gi|261402947|ref|YP_003247171.1| - 2.9e-64 215.4 0.1 3.4e-64 215.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2112) TP6A_N PF04406.14 gi|261402948|ref|YP_003247172.1| - 4.3e-17 61.8 0.0 7.2e-17 61.1 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Acetyltransf_8 PF13523.6 gi|261402948|ref|YP_003247172.1| - 0.041 13.6 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Tubulin PF00091.25 gi|261402949|ref|YP_003247173.1| - 1.8e-44 152.3 1.1 3e-44 151.6 1.1 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|261402949|ref|YP_003247173.1| - 1e-34 118.7 1.2 3.7e-34 116.9 1.2 2.0 1 0 0 1 1 1 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|261402949|ref|YP_003247173.1| - 0.028 13.6 6.7 0.047 12.9 1.2 2.6 1 1 1 2 2 2 0 Tubulin like SecE PF00584.20 gi|261402950|ref|YP_003247174.1| - 4.8e-06 26.4 0.1 5.5e-06 26.2 0.1 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Syntaxin-18_N PF10496.9 gi|261402950|ref|YP_003247174.1| - 0.17 12.2 0.0 1.1 9.6 0.0 1.8 1 1 1 2 2 2 0 SNARE-complex protein Syntaxin-18 N-terminus Mur_ligase_M PF08245.12 gi|261402951|ref|YP_003247175.1| - 4e-09 36.7 1.2 3.2e-08 33.8 1.2 2.2 1 1 0 1 1 1 1 Mur ligase middle domain DUF836 PF05768.14 gi|261402951|ref|YP_003247175.1| - 0.003 17.9 0.4 0.039 14.4 0.0 2.6 2 1 0 2 2 2 1 Glutaredoxin-like domain (DUF836) CbiA PF01656.23 gi|261402951|ref|YP_003247175.1| - 0.043 13.9 0.0 0.29 11.2 0.0 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain PBP_like_2 PF12849.7 gi|261402952|ref|YP_003247176.1| - 1.3e-55 189.0 0.8 1.7e-55 188.7 0.8 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|261402952|ref|YP_003247176.1| - 6.6e-25 88.7 6.5 8.6e-25 88.3 6.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|261402952|ref|YP_003247176.1| - 4.5e-06 25.9 0.0 3.2e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|261402953|ref|YP_003247177.1| - 1.5e-13 50.9 15.5 1.5e-13 50.9 15.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|261402954|ref|YP_003247178.1| - 6.4e-13 48.8 15.0 6.4e-13 48.8 15.0 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|261402955|ref|YP_003247179.1| - 4.9e-32 111.3 0.0 6.6e-32 110.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261402955|ref|YP_003247179.1| - 1.1e-10 41.8 0.1 7.8e-05 22.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|261402955|ref|YP_003247179.1| - 1.3e-07 31.3 0.1 8.3e-06 25.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|261402955|ref|YP_003247179.1| - 0.00016 22.3 0.3 0.00028 21.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|261402955|ref|YP_003247179.1| - 0.00019 21.2 0.1 0.00077 19.3 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|261402955|ref|YP_003247179.1| - 0.00052 20.3 0.1 0.0011 19.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|261402955|ref|YP_003247179.1| - 0.0007 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|261402955|ref|YP_003247179.1| - 0.00075 19.4 0.0 0.0016 18.4 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|261402955|ref|YP_003247179.1| - 0.002 17.8 0.0 0.0044 16.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|261402955|ref|YP_003247179.1| - 0.0025 18.2 0.0 0.0054 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|261402955|ref|YP_003247179.1| - 0.025 15.1 0.0 0.077 13.5 0.0 1.8 3 0 0 3 3 2 0 AAA domain ABC_ATPase PF09818.9 gi|261402955|ref|YP_003247179.1| - 0.038 12.8 0.0 1.8 7.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class PRK PF00485.18 gi|261402955|ref|YP_003247179.1| - 0.042 13.6 0.0 0.1 12.4 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|261402955|ref|YP_003247179.1| - 0.059 13.5 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|261402955|ref|YP_003247179.1| - 0.074 12.8 0.0 0.3 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|261402955|ref|YP_003247179.1| - 0.087 12.0 0.0 0.26 10.4 0.0 1.7 1 1 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|261402955|ref|YP_003247179.1| - 0.1 12.3 0.0 1.3 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|261402955|ref|YP_003247179.1| - 0.1 11.3 0.0 1.4 7.6 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein PhoU PF01895.19 gi|261402956|ref|YP_003247180.1| - 6.1e-13 49.0 10.3 2.8e-06 27.7 3.5 2.2 2 0 0 2 2 2 2 PhoU domain RuvB_N PF05496.12 gi|261402956|ref|YP_003247180.1| - 0.1 12.4 0.4 0.23 11.2 0.4 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PhoU PF01895.19 gi|261402957|ref|YP_003247181.1| - 4.1e-36 123.3 11.7 7.3e-22 77.6 2.6 2.2 2 0 0 2 2 2 2 PhoU domain DUF5344 PF17279.2 gi|261402957|ref|YP_003247181.1| - 0.041 14.5 0.2 0.041 14.5 0.2 2.4 3 0 0 3 3 3 0 Family of unknown function (DUF5344) BBS2_Mid PF14783.6 gi|261402957|ref|YP_003247181.1| - 0.12 12.4 1.1 0.78 9.8 0.0 2.2 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, middle region AAA_18 PF13238.6 gi|261402958|ref|YP_003247182.1| - 1.6e-28 99.8 0.7 2.5e-28 99.2 0.7 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|261402958|ref|YP_003247182.1| - 7.9e-10 39.3 3.8 3.1e-09 37.4 1.9 2.4 2 1 0 2 2 2 1 AAA domain dNK PF01712.19 gi|261402958|ref|YP_003247182.1| - 1.1e-08 35.2 2.8 2.2e-05 24.4 0.3 2.3 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|261402958|ref|YP_003247182.1| - 1.4e-07 31.9 0.0 2.3e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|261402958|ref|YP_003247182.1| - 1.1e-06 28.8 0.2 0.0006 20.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|261402958|ref|YP_003247182.1| - 2.8e-06 27.5 0.6 1.6e-05 25.1 0.6 1.9 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.17 gi|261402958|ref|YP_003247182.1| - 9.8e-06 25.4 2.9 0.0015 18.2 0.1 2.4 1 1 2 3 3 3 2 Thymidylate kinase Cytidylate_kin PF02224.18 gi|261402958|ref|YP_003247182.1| - 2e-05 24.5 0.1 0.0015 18.3 0.0 2.2 2 0 0 2 2 2 1 Cytidylate kinase AAA PF00004.29 gi|261402958|ref|YP_003247182.1| - 4.4e-05 23.9 1.0 7.9e-05 23.1 1.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|261402958|ref|YP_003247182.1| - 7.9e-05 22.7 0.3 0.00019 21.4 0.0 1.7 2 1 0 2 2 2 1 Rad17 P-loop domain Cytidylate_kin2 PF13189.6 gi|261402958|ref|YP_003247182.1| - 0.0003 21.0 0.6 0.0032 17.6 0.1 2.3 1 1 2 3 3 3 1 Cytidylate kinase-like family RAP1 PF07218.11 gi|261402958|ref|YP_003247182.1| - 0.0017 16.7 1.8 0.0019 16.6 1.3 1.3 1 1 0 1 1 1 1 Rhoptry-associated protein 1 (RAP-1) PRK PF00485.18 gi|261402958|ref|YP_003247182.1| - 0.0024 17.6 0.6 0.0082 15.9 0.6 2.1 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family RuvB_N PF05496.12 gi|261402958|ref|YP_003247182.1| - 0.0029 17.4 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain KTI12 PF08433.10 gi|261402958|ref|YP_003247182.1| - 0.0048 16.4 0.3 0.017 14.6 0.1 1.9 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|261402958|ref|YP_003247182.1| - 0.0063 16.8 0.7 0.012 15.8 0.4 1.7 2 1 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|261402958|ref|YP_003247182.1| - 0.0094 15.3 5.3 0.79 9.0 0.1 2.3 2 1 0 2 2 2 2 KaiC AAA_14 PF13173.6 gi|261402958|ref|YP_003247182.1| - 0.0095 16.0 1.6 0.013 15.5 1.3 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|261402958|ref|YP_003247182.1| - 0.0095 15.6 0.3 0.029 14.0 0.0 2.0 2 1 1 3 3 3 1 Dephospho-CoA kinase Glyco_hydro_38C PF07748.13 gi|261402958|ref|YP_003247182.1| - 0.019 15.0 0.1 0.029 14.4 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 C-terminal domain NTPase_1 PF03266.15 gi|261402958|ref|YP_003247182.1| - 0.02 14.8 2.5 0.02 14.8 2.5 2.8 2 1 1 3 3 3 0 NTPase TsaE PF02367.17 gi|261402958|ref|YP_003247182.1| - 0.026 14.5 0.1 0.054 13.5 0.1 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ADK PF00406.22 gi|261402958|ref|YP_003247182.1| - 0.028 14.5 1.7 1.9 8.5 0.1 2.3 1 1 1 2 2 2 0 Adenylate kinase Zeta_toxin PF06414.12 gi|261402958|ref|YP_003247182.1| - 0.033 13.4 0.2 0.27 10.5 0.1 2.2 1 1 1 2 2 2 0 Zeta toxin RNA_helicase PF00910.22 gi|261402958|ref|YP_003247182.1| - 0.038 14.4 0.1 0.082 13.3 0.0 1.6 2 0 0 2 2 1 0 RNA helicase MeaB PF03308.16 gi|261402958|ref|YP_003247182.1| - 0.06 12.3 0.3 0.12 11.3 0.3 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|261402958|ref|YP_003247182.1| - 0.063 13.0 0.2 0.083 12.6 0.2 1.5 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.27 gi|261402958|ref|YP_003247182.1| - 0.074 13.6 0.7 0.12 12.8 0.7 1.8 1 1 0 1 1 1 0 ABC transporter APS_kinase PF01583.20 gi|261402958|ref|YP_003247182.1| - 0.078 12.9 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 gi|261402958|ref|YP_003247182.1| - 0.15 12.2 2.4 0.45 10.6 2.4 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase LacI PF00356.21 gi|261402958|ref|YP_003247182.1| - 0.15 11.9 2.2 0.23 11.3 0.1 2.4 3 0 0 3 3 2 0 Bacterial regulatory proteins, lacI family AAA_24 PF13479.6 gi|261402958|ref|YP_003247182.1| - 0.17 11.6 6.4 0.7 9.6 6.4 2.4 1 1 0 1 1 1 0 AAA domain Seryl_tRNA_N PF02403.22 gi|261402958|ref|YP_003247182.1| - 0.54 10.5 4.5 1.3 9.3 0.1 2.7 3 0 0 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Carb_kinase PF01256.17 gi|261402959|ref|YP_003247183.1| - 9.4e-57 192.3 0.0 1.4e-56 191.7 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|261402959|ref|YP_003247183.1| - 9.8e-25 87.4 0.0 1.9e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus SUKH_6 PF14568.6 gi|261402959|ref|YP_003247183.1| - 0.053 14.0 3.4 0.15 12.5 0.1 2.8 3 0 0 3 3 3 0 SMI1-KNR4 cell-wall PHP_C PF13263.6 gi|261402960|ref|YP_003247184.1| - 1.9e-14 53.1 0.0 4.3e-14 52.0 0.0 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|261402960|ref|YP_003247184.1| - 1.2e-08 35.4 0.0 1.4e-08 35.2 0.0 1.4 1 1 0 1 1 1 1 PHP domain DUF234 PF03008.14 gi|261402960|ref|YP_003247184.1| - 0.045 14.2 0.1 1.3 9.5 0.0 2.4 2 0 0 2 2 2 0 Archaea bacterial proteins of unknown function NicO PF03824.16 gi|261402961|ref|YP_003247185.1| - 2.1e-12 47.0 18.8 9.8e-09 35.0 8.2 2.0 1 1 1 2 2 2 2 High-affinity nickel-transport protein DsbD_2 PF13386.6 gi|261402961|ref|YP_003247185.1| - 3.3e-09 37.0 12.9 4e-08 33.4 12.8 2.5 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF2162 PF09930.9 gi|261402961|ref|YP_003247185.1| - 4.8e-06 26.2 12.0 4.8e-06 26.2 12.0 1.5 2 0 0 2 2 2 1 Predicted transporter (DUF2162) Saf_2TM PF18303.1 gi|261402961|ref|YP_003247185.1| - 0.038 13.6 0.5 0.038 13.6 0.5 2.1 2 1 1 3 3 3 0 SAVED-fused 2TM effector domain DUF4231 PF14015.6 gi|261402961|ref|YP_003247185.1| - 0.55 10.7 2.8 1.8 9.1 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) Multi_Drug_Res PF00893.19 gi|261402961|ref|YP_003247185.1| - 1.9 9.2 12.2 0.24 12.1 4.9 2.4 1 1 1 2 2 2 0 Small Multidrug Resistance protein DUF2627 PF11118.8 gi|261402961|ref|YP_003247185.1| - 3.7 8.2 9.2 6.9 7.3 2.3 3.6 2 2 0 2 2 2 0 Protein of unknown function (DUF2627) RseC_MucC PF04246.12 gi|261402961|ref|YP_003247185.1| - 9.6 6.2 8.5 0.48 10.4 0.8 2.5 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC SPOUT_MTase_2 PF14419.6 gi|261402962|ref|YP_003247186.1| - 8.4e-81 269.4 0.3 1.5e-80 268.6 0.3 1.4 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|261402962|ref|YP_003247186.1| - 4.2e-30 104.7 4.8 9.2e-30 103.6 4.8 1.6 1 0 0 1 1 1 1 THUMP domain Methyltrn_RNA_4 PF09936.9 gi|261402962|ref|YP_003247186.1| - 0.0013 18.7 0.0 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 SAM-dependent RNA methyltransferase DUF3010 PF11215.8 gi|261402962|ref|YP_003247186.1| - 0.023 15.0 0.8 0.044 14.1 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3010) Lyase_1 PF00206.20 gi|261402962|ref|YP_003247186.1| - 0.029 13.8 1.1 0.049 13.0 1.1 1.3 1 0 0 1 1 1 0 Lyase YnfE PF17452.2 gi|261402962|ref|YP_003247186.1| - 0.096 13.0 0.2 0.096 13.0 0.2 2.7 3 0 0 3 3 3 0 Uncharacterized YnfE-like ETRAMP PF09716.10 gi|261402962|ref|YP_003247186.1| - 0.2 11.7 1.6 0.32 11.1 1.5 1.7 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) O_anti_polymase PF01901.16 gi|261402963|ref|YP_003247187.1| - 1.7e-63 214.9 66.8 1e-61 209.1 66.8 2.0 1 1 0 1 1 1 1 Putative O-antigen polymerase O_anti_polymase PF01901.16 gi|261402964|ref|YP_003247188.1| - 1.4e-88 297.4 45.2 1.8e-88 297.1 45.2 1.1 1 0 0 1 1 1 1 Putative O-antigen polymerase YdjM PF04307.14 gi|261402964|ref|YP_003247188.1| - 0.00048 19.5 6.8 0.0015 17.9 6.8 1.9 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF5423 PF17461.2 gi|261402964|ref|YP_003247188.1| - 0.37 9.6 0.6 0.97 8.2 0.1 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5423) Regulator_TrmB PF11495.8 gi|261402965|ref|YP_003247189.1| - 1.5e-07 30.8 0.0 2.7e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB LigA PF07746.11 gi|261402965|ref|YP_003247189.1| - 0.17 12.0 0.0 0.34 11.1 0.0 1.4 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DUF3352 PF11832.8 gi|261402966|ref|YP_003247190.1| - 0.00095 17.9 0.4 0.015 14.0 0.0 2.5 2 1 0 3 3 3 1 Protein of unknown function (DUF3352) DUF3242 PF11586.8 gi|261402966|ref|YP_003247190.1| - 0.0081 15.9 5.4 1.2 8.9 0.4 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF3242) Gag_p30 PF02093.16 gi|261402966|ref|YP_003247190.1| - 0.077 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Gag P30 core shell protein Radical_SAM PF04055.21 gi|261402967|ref|YP_003247191.1| - 3.6e-11 43.7 0.2 2.4e-10 41.0 0.1 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|261402967|ref|YP_003247191.1| - 4.8e-05 23.5 0.0 0.00013 22.1 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|261402967|ref|YP_003247191.1| - 0.0064 16.8 0.0 0.019 15.2 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain tRNA-synt_1 PF00133.22 gi|261402968|ref|YP_003247192.1| - 2.7e-68 230.7 1.5 9.4e-67 225.6 1.5 2.7 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|261402968|ref|YP_003247192.1| - 6.5e-28 97.6 0.2 2.4e-10 39.7 0.0 3.5 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|261402968|ref|YP_003247192.1| - 2.5e-23 82.7 0.3 8.2e-23 81.0 0.3 2.0 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|261402968|ref|YP_003247192.1| - 1.5e-12 47.4 0.5 6.3e-12 45.4 0.0 2.2 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|261402968|ref|YP_003247192.1| - 0.0008 18.8 0.7 0.007 15.8 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain Latarcin PF10279.9 gi|261402968|ref|YP_003247192.1| - 0.0023 18.3 0.0 0.058 13.8 0.0 3.3 3 1 0 3 3 3 1 Latarcin precursor ADP_ribosyl_GH PF03747.14 gi|261402969|ref|YP_003247193.1| - 5.1e-63 213.5 0.0 5.8e-63 213.3 0.0 1.0 1 0 0 1 1 1 1 ADP-ribosylglycohydrolase Pilin_N PF07790.11 gi|261402970|ref|YP_003247194.1| - 0.05 14.5 0.1 0.27 12.2 0.1 2.2 2 0 0 2 2 2 0 Archaeal Type IV pilin, N-terminal CBS PF00571.28 gi|261402971|ref|YP_003247195.1| - 1.3e-52 176.1 13.3 1.4e-15 57.4 0.8 4.5 4 0 0 4 4 4 4 CBS domain PyrI PF01948.18 gi|261402972|ref|YP_003247196.1| - 6.1e-30 103.3 8.1 8.7e-30 102.8 8.1 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|261402972|ref|YP_003247196.1| - 9e-18 63.9 5.2 1.5e-17 63.2 5.2 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF5612 PF18462.1 gi|261402973|ref|YP_003247197.1| - 2e-74 248.1 7.7 6.9e-74 246.4 4.8 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5612) ACT PF01842.25 gi|261402973|ref|YP_003247197.1| - 3.1e-08 33.2 0.0 4e-07 29.7 0.0 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|261402973|ref|YP_003247197.1| - 0.0009 19.8 0.0 0.0023 18.5 0.0 1.7 1 0 0 1 1 1 1 ACT domain K_oxygenase PF13434.6 gi|261402973|ref|YP_003247197.1| - 0.16 11.0 0.1 0.23 10.6 0.1 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) PcrB PF01884.17 gi|261402973|ref|YP_003247197.1| - 0.17 11.3 2.9 0.36 10.2 1.0 2.2 1 1 1 2 2 2 0 PcrB family Aminotran_3 PF00202.21 gi|261402974|ref|YP_003247198.1| - 8.2e-114 380.4 0.0 1e-113 380.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III PolC_DP2 PF03833.13 gi|261402975|ref|YP_003247199.1| - 0 1243.6 1.0 0 1243.6 1.0 2.3 2 1 0 2 2 2 1 DNA polymerase II large subunit DP2 LAGLIDADG_3 PF14528.6 gi|261402975|ref|YP_003247199.1| - 5.3e-15 55.5 4.0 2.6e-10 40.5 0.1 3.8 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|261402975|ref|YP_003247199.1| - 4.8e-12 46.0 0.1 4.8e-12 46.0 0.1 4.8 5 1 0 5 5 4 1 Intein splicing domain DNA_ligase_ZBD PF03119.16 gi|261402975|ref|YP_003247199.1| - 0.026 14.5 0.8 4.9 7.3 0.1 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cas9_PI2 PF18070.1 gi|261402975|ref|YP_003247199.1| - 0.052 14.3 0.8 5.7 7.8 0.1 3.3 2 0 0 2 2 2 0 CRISPR-Cas9 PI domain DZR PF12773.7 gi|261402975|ref|YP_003247199.1| - 0.056 13.5 4.6 3.1 7.9 0.4 2.5 2 0 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|261402975|ref|YP_003247199.1| - 0.06 13.3 1.4 8.4 6.5 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbons Yqai PF09466.10 gi|261402975|ref|YP_003247199.1| - 0.063 13.6 4.6 0.078 13.3 0.1 3.4 3 0 0 3 3 3 0 Hypothetical protein Yqai Lar_restr_allev PF14354.6 gi|261402975|ref|YP_003247199.1| - 0.076 13.4 1.0 20 5.7 0.0 3.2 4 0 0 4 4 3 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|261402975|ref|YP_003247199.1| - 0.091 12.2 7.7 0.54 9.7 1.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain DUF5442 PF17514.2 gi|261402975|ref|YP_003247199.1| - 0.23 11.7 3.2 0.36 11.0 0.4 2.9 2 0 0 2 2 2 0 Family of unknown function (DUF5442) Zn_Tnp_IS1595 PF12760.7 gi|261402975|ref|YP_003247199.1| - 0.4 10.7 5.4 44 4.2 0.0 3.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|261402975|ref|YP_003247199.1| - 1.2 9.2 4.2 2.9 8.0 0.4 2.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|261402975|ref|YP_003247199.1| - 1.8 8.3 4.4 6.8 6.4 0.0 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|261402975|ref|YP_003247199.1| - 2.6 7.9 7.4 0.23 11.3 0.2 2.8 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|261402975|ref|YP_003247199.1| - 3 7.8 5.9 60 3.7 0.1 3.7 3 0 0 3 3 3 0 Nudix N-terminal DUF1272 PF06906.11 gi|261402975|ref|YP_003247199.1| - 3.2 7.9 5.0 3.5 7.8 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.10 gi|261402975|ref|YP_003247199.1| - 9.5 6.1 6.2 18 5.2 0.2 3.3 2 1 1 3 3 3 0 A2L zinc ribbon domain DUF89 PF01937.19 gi|261402976|ref|YP_003247200.1| - 1.1e-63 215.3 2.9 1.3e-63 215.1 2.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF89 GTP-bdg_N PF13167.6 gi|261402977|ref|YP_003247201.1| - 2.3e-20 73.1 0.3 8.3e-20 71.3 0.3 2.0 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|261402977|ref|YP_003247201.1| - 7.3e-20 71.4 5.7 2e-19 70.0 5.7 1.8 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|261402977|ref|YP_003247201.1| - 1e-18 67.4 0.7 1e-18 67.4 0.7 2.2 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261402977|ref|YP_003247201.1| - 6.5e-13 48.5 1.3 1.3e-12 47.5 1.3 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|261402977|ref|YP_003247201.1| - 4.8e-08 33.1 10.1 0.00036 20.5 0.3 3.0 3 0 0 3 3 3 2 RsgA GTPase GTP_EFTU PF00009.27 gi|261402977|ref|YP_003247201.1| - 2.7e-06 27.1 4.8 2.1e-05 24.2 1.7 2.8 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|261402977|ref|YP_003247201.1| - 1e-05 25.5 0.7 1e-05 25.5 0.7 2.6 2 2 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|261402977|ref|YP_003247201.1| - 8.2e-05 22.3 0.8 0.001 18.7 0.1 2.4 2 0 0 2 2 2 1 Ras family Roc PF08477.13 gi|261402977|ref|YP_003247201.1| - 0.0003 21.0 1.5 0.0029 17.8 1.5 2.5 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Arf PF00025.21 gi|261402977|ref|YP_003247201.1| - 0.00045 19.7 3.6 0.0018 17.7 3.6 2.0 1 1 0 1 1 1 1 ADP-ribosylation factor family Gtr1_RagA PF04670.12 gi|261402977|ref|YP_003247201.1| - 0.0012 18.2 2.3 0.0044 16.4 2.3 1.9 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region SRPRB PF09439.10 gi|261402977|ref|YP_003247201.1| - 0.0033 16.9 6.3 0.0042 16.6 4.5 2.1 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit ABC_tran PF00005.27 gi|261402977|ref|YP_003247201.1| - 0.0039 17.7 3.3 0.0075 16.8 2.1 2.4 1 1 1 2 2 2 1 ABC transporter Dynamin_N PF00350.23 gi|261402977|ref|YP_003247201.1| - 0.015 15.3 7.2 0.043 13.9 2.4 3.4 2 1 0 2 2 2 0 Dynamin family NOG1 PF06858.14 gi|261402977|ref|YP_003247201.1| - 0.022 14.5 0.4 0.059 13.2 0.4 1.7 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) TMP-TENI PF02581.17 gi|261402977|ref|YP_003247201.1| - 0.025 13.9 0.1 2.9 7.2 0.0 2.4 2 0 0 2 2 2 0 Thiamine monophosphate synthase cobW PF02492.19 gi|261402977|ref|YP_003247201.1| - 0.051 13.2 7.8 0.27 10.8 1.3 2.7 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|261402977|ref|YP_003247201.1| - 0.14 11.9 3.3 2.8 7.7 3.3 2.5 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF4922 PF16269.5 gi|261402977|ref|YP_003247201.1| - 0.15 11.8 0.8 9.9 5.9 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4922) Rad17 PF03215.15 gi|261402977|ref|YP_003247201.1| - 0.15 11.9 3.8 0.35 10.8 3.8 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain P4Ha_N PF08336.11 gi|261402977|ref|YP_003247201.1| - 2.2 8.3 5.5 0.92 9.5 0.6 2.7 3 0 0 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF1192 PF06698.11 gi|261402977|ref|YP_003247201.1| - 3 8.0 8.8 1.7 8.7 0.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Spore_II_R PF09551.10 gi|261402977|ref|YP_003247201.1| - 5.4 7.5 7.1 0.72 10.3 0.3 2.7 2 1 1 3 3 3 0 Stage II sporulation protein R (spore_II_R) GreA_GreB_N PF03449.15 gi|261402977|ref|YP_003247201.1| - 6.2 7.0 9.0 3.7 7.8 0.3 3.2 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal DUF364 PF04016.12 gi|261402978|ref|YP_003247202.1| - 6.2e-13 48.6 0.0 1e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation PS_pyruv_trans PF04230.13 gi|261402978|ref|YP_003247202.1| - 0.0025 17.8 0.0 0.0031 17.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide pyruvyl transferase TPP_enzyme_M PF00205.22 gi|261402978|ref|YP_003247202.1| - 0.13 12.0 0.0 0.46 10.2 0.0 1.9 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ABC_tran PF00005.27 gi|261402979|ref|YP_003247203.1| - 8.8e-29 100.8 0.0 1.3e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261402979|ref|YP_003247203.1| - 2.8e-05 24.1 4.2 0.0064 16.3 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|261402979|ref|YP_003247203.1| - 0.00098 18.6 0.2 0.13 11.7 0.1 2.6 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|261402979|ref|YP_003247203.1| - 0.0092 15.9 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 gi|261402979|ref|YP_003247203.1| - 0.011 16.0 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 TOBE domain AAA_29 PF13555.6 gi|261402979|ref|YP_003247203.1| - 0.023 14.4 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain OB_MalK PF17912.1 gi|261402979|ref|YP_003247203.1| - 0.027 15.3 0.0 0.087 13.7 0.0 1.9 1 0 0 1 1 1 0 MalK OB fold domain cobW PF02492.19 gi|261402979|ref|YP_003247203.1| - 0.039 13.5 0.2 0.2 11.2 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|261402979|ref|YP_003247203.1| - 0.053 13.9 0.5 0.27 11.7 0.5 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|261402979|ref|YP_003247203.1| - 0.065 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|261402979|ref|YP_003247203.1| - 0.11 12.9 0.1 0.18 12.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|261402979|ref|YP_003247203.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|261402979|ref|YP_003247203.1| - 0.3 11.3 1.4 1.3 9.3 1.4 2.0 1 1 0 1 1 1 0 AAA domain Aconitase_C PF00694.19 gi|261402980|ref|YP_003247204.1| - 3.2e-22 79.3 0.1 1.2e-21 77.4 0.1 1.8 1 1 1 2 2 2 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|261402980|ref|YP_003247204.1| - 1.1e-05 25.1 0.1 0.00035 20.3 0.1 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Oxidored_nitro PF00148.19 gi|261402982|ref|YP_003247206.1| - 2.3e-110 369.1 0.0 2.6e-110 368.9 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase SidC_N PF18219.1 gi|261402982|ref|YP_003247206.1| - 0.046 12.7 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 SidC N-terminal domain Aminotran_3 PF00202.21 gi|261402983|ref|YP_003247207.1| - 3.1e-75 253.3 0.0 4e-75 253.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|261402983|ref|YP_003247207.1| - 4e-05 23.0 0.0 5.1e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Peptidase_S80 PF07230.11 gi|261402983|ref|YP_003247207.1| - 0.0041 15.5 0.3 0.0065 14.8 0.3 1.2 1 0 0 1 1 1 1 Bacteriophage T4-like capsid assembly protein (Gp20) DUF167 PF02594.16 gi|261402983|ref|YP_003247207.1| - 0.059 13.5 0.0 3.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised ACR, YggU family COG1872 Ligase_CoA PF00549.19 gi|261402983|ref|YP_003247207.1| - 0.11 12.3 0.3 1.3 8.8 0.2 2.2 1 1 0 1 1 1 0 CoA-ligase PgpA PF04608.13 gi|261402984|ref|YP_003247208.1| - 5.2e-19 68.7 0.0 6.3e-19 68.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Cation_ATPase_N PF00690.26 gi|261402984|ref|YP_003247208.1| - 0.055 13.2 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Cation transporter/ATPase, N-terminus Peptidase_M24 PF00557.24 gi|261402985|ref|YP_003247209.1| - 1.6e-39 135.8 0.0 1.8e-39 135.6 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 TssO PF17561.2 gi|261402986|ref|YP_003247210.1| - 0.79 9.8 3.9 1.2 9.3 3.9 1.3 1 0 0 1 1 1 0 Type VI secretion system, TssO Use1 PF09753.9 gi|261402986|ref|YP_003247210.1| - 0.81 9.4 2.9 0.82 9.3 2.9 1.2 1 0 0 1 1 1 0 Membrane fusion protein Use1 DUF61 PF01886.16 gi|261402987|ref|YP_003247211.1| - 7.2e-33 113.3 6.0 8.1e-33 113.2 6.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 NdhN PF11909.8 gi|261402987|ref|YP_003247211.1| - 0.036 13.7 0.1 0.058 13.1 0.1 1.3 1 0 0 1 1 1 0 NADH-quinone oxidoreductase cyanobacterial subunit N CBS PF00571.28 gi|261402988|ref|YP_003247212.1| - 7.8e-59 196.0 16.6 3.1e-15 56.3 0.5 4.1 4 0 0 4 4 4 4 CBS domain Peptidase_S51 PF03575.17 gi|261402988|ref|YP_003247212.1| - 0.0092 15.6 0.2 0.045 13.4 0.0 2.2 3 0 0 3 3 3 1 Peptidase family S51 DUF3819 PF12842.7 gi|261402988|ref|YP_003247212.1| - 1.2 9.0 4.6 7.1 6.6 0.1 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF3819) E1-E2_ATPase PF00122.20 gi|261402989|ref|YP_003247213.1| - 1.9e-53 180.7 4.2 1.9e-53 180.7 4.2 3.2 5 0 0 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|261402989|ref|YP_003247213.1| - 3.8e-23 82.9 0.9 1.3e-22 81.1 1.1 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|261402989|ref|YP_003247213.1| - 3.8e-18 64.9 0.0 3.8e-18 64.9 0.0 3.0 4 0 0 4 4 4 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|261402989|ref|YP_003247213.1| - 2.3e-05 24.3 6.7 3.2e-05 23.8 0.7 2.8 2 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|261402989|ref|YP_003247213.1| - 0.0033 17.5 0.0 0.0067 16.5 0.0 1.4 1 0 0 1 1 1 1 Cation transport ATPase (P-type) UPF0220 PF05255.11 gi|261402989|ref|YP_003247213.1| - 0.0097 15.5 0.9 0.026 14.1 0.4 1.9 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0220) Radical_SAM PF04055.21 gi|261402990|ref|YP_003247214.1| - 9.2e-23 81.4 4.4 9.7e-22 78.1 2.6 2.1 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|261402990|ref|YP_003247214.1| - 9e-15 55.2 0.5 1.9e-14 54.1 0.2 1.7 1 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|261402990|ref|YP_003247214.1| - 5e-09 36.3 0.9 1.5e-08 34.8 0.1 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain ComA PF02679.15 gi|261402990|ref|YP_003247214.1| - 0.0072 15.8 0.6 2.8 7.3 0.0 2.1 1 1 1 2 2 2 2 (2R)-phospho-3-sulfolactate synthase (ComA) Glutaredoxin PF00462.24 gi|261402990|ref|YP_003247214.1| - 0.04 14.2 0.9 0.12 12.6 0.1 2.2 2 0 0 2 2 2 0 Glutaredoxin B12-binding PF02310.19 gi|261402990|ref|YP_003247214.1| - 0.057 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 B12 binding domain EFP_N PF08207.12 gi|261402991|ref|YP_003247215.1| - 1.1e-07 31.7 0.4 6.4e-06 26.1 0.1 2.2 2 0 0 2 2 2 2 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|261402991|ref|YP_003247215.1| - 2.6e-07 30.6 0.2 1.1e-06 28.7 0.2 1.9 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP PF01132.20 gi|261402991|ref|YP_003247215.1| - 0.053 13.6 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain CPSase_L_D2 PF02786.17 gi|261402992|ref|YP_003247216.1| - 2e-83 279.0 0.5 3.3e-83 278.3 0.5 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|261402992|ref|YP_003247216.1| - 5.1e-47 159.0 0.3 1.2e-46 157.8 0.3 1.6 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|261402992|ref|YP_003247216.1| - 9.1e-44 148.0 0.0 1.7e-43 147.1 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|261402992|ref|YP_003247216.1| - 1.1e-14 54.5 0.0 2.4e-14 53.4 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|261402992|ref|YP_003247216.1| - 1.7e-09 37.5 0.4 1.9e-08 34.1 0.4 2.2 1 1 0 1 1 1 1 RimK-like ATP-grasp domain GARS_A PF01071.19 gi|261402992|ref|YP_003247216.1| - 1.1e-06 28.6 0.1 2.3e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|261402992|ref|YP_003247216.1| - 1.5e-05 24.6 0.1 2.7e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|261402992|ref|YP_003247216.1| - 2.1e-05 24.6 0.1 3.7e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|261402992|ref|YP_003247216.1| - 0.002 17.9 0.0 0.0048 16.6 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.6 gi|261402992|ref|YP_003247216.1| - 0.002 17.6 0.1 0.0059 16.1 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain AP_endonuc_2 PF01261.24 gi|261402992|ref|YP_003247216.1| - 0.004 16.6 0.0 0.14 11.6 0.0 2.9 2 1 1 3 3 3 1 Xylose isomerase-like TIM barrel Oxidored_nitro PF00148.19 gi|261402992|ref|YP_003247216.1| - 0.0063 15.3 0.2 0.12 11.0 0.0 2.3 1 1 1 2 2 2 1 Nitrogenase component 1 type Oxidoreductase GshA PF08886.11 gi|261402992|ref|YP_003247216.1| - 0.046 12.3 0.0 0.066 11.8 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase zinc_ribbon_13 PF09855.9 gi|261402993|ref|YP_003247217.1| - 1.3e-26 92.5 1.0 1.4e-26 92.4 1.0 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|261402993|ref|YP_003247217.1| - 0.00023 21.5 0.1 0.00029 21.1 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar CpXC PF14353.6 gi|261402993|ref|YP_003247217.1| - 0.002 18.2 0.7 0.069 13.2 1.1 2.0 1 1 0 1 1 1 1 CpXC protein TF_Zn_Ribbon PF08271.12 gi|261402993|ref|YP_003247217.1| - 0.0027 17.2 0.3 0.45 10.1 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding TFIIS_C PF01096.18 gi|261402993|ref|YP_003247217.1| - 0.0054 16.5 1.2 1.9 8.4 0.1 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_10 PF10058.9 gi|261402993|ref|YP_003247217.1| - 0.011 15.4 1.7 2.9 7.7 0.2 2.4 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein YokU PF14122.6 gi|261402993|ref|YP_003247217.1| - 0.013 15.5 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 YokU-like protein, putative antitoxin Zn_Tnp_IS1595 PF12760.7 gi|261402993|ref|YP_003247217.1| - 0.017 15.0 2.3 0.66 10.0 2.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|261402993|ref|YP_003247217.1| - 0.021 14.9 2.2 0.7 10.0 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|261402993|ref|YP_003247217.1| - 0.028 13.8 4.2 2.2 7.8 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|261402993|ref|YP_003247217.1| - 0.032 14.9 0.3 9.3 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RRN7 PF11781.8 gi|261402993|ref|YP_003247217.1| - 0.037 13.7 1.7 0.42 10.4 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|261402993|ref|YP_003247217.1| - 0.042 13.7 0.2 8.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|261402993|ref|YP_003247217.1| - 0.05 13.3 3.3 3.2 7.6 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF2387 PF09526.10 gi|261402993|ref|YP_003247217.1| - 0.064 13.4 1.0 0.45 10.7 1.0 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF4379 PF14311.6 gi|261402993|ref|YP_003247217.1| - 0.065 13.6 0.4 1.9 8.9 0.1 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-RanBP PF00641.18 gi|261402993|ref|YP_003247217.1| - 0.068 12.5 0.8 0.068 12.5 0.8 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others A2L_zn_ribbon PF08792.10 gi|261402993|ref|YP_003247217.1| - 0.081 12.7 1.9 5.9 6.7 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|261402993|ref|YP_003247217.1| - 0.21 11.3 5.7 1.9 8.3 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|261402993|ref|YP_003247217.1| - 0.23 11.3 1.0 2.9 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO ADK_lid PF05191.14 gi|261402993|ref|YP_003247217.1| - 0.32 11.0 4.6 3.3 7.8 0.4 2.6 3 0 0 3 3 3 0 Adenylate kinase, active site lid RNA_POL_M_15KD PF02150.16 gi|261402993|ref|YP_003247217.1| - 0.54 10.2 4.8 8.9 6.3 0.6 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|261402993|ref|YP_003247217.1| - 0.57 10.3 3.3 7 6.9 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zf_C2H2_10 PF18414.1 gi|261402993|ref|YP_003247217.1| - 1 8.9 4.2 3.3 7.3 0.4 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger PYC_OADA PF02436.18 gi|261402994|ref|YP_003247218.1| - 1.2e-62 211.2 0.2 6.4e-62 208.8 0.1 2.2 2 1 1 3 3 3 1 Conserved carboxylase domain HMGL-like PF00682.19 gi|261402994|ref|YP_003247218.1| - 1.6e-49 168.8 0.0 2.4e-49 168.3 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Biotin_lipoyl PF00364.22 gi|261402994|ref|YP_003247218.1| - 3.2e-20 71.7 7.1 3.2e-20 71.7 7.1 2.3 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|261402994|ref|YP_003247218.1| - 1.9e-16 59.6 2.2 7.2e-08 32.1 0.1 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like RnfC_N PF13375.6 gi|261402994|ref|YP_003247218.1| - 4.9e-06 26.4 2.5 1.5e-05 24.9 1.7 2.3 2 1 0 2 2 2 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|261402994|ref|YP_003247218.1| - 5.1e-05 23.9 0.9 0.43 11.3 0.0 2.9 3 0 0 3 3 2 2 HlyD family secretion protein NQRA PF05896.11 gi|261402994|ref|YP_003247218.1| - 6.9e-05 22.4 1.2 0.00013 21.5 1.2 1.5 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HlyD_D23 PF16576.5 gi|261402994|ref|YP_003247218.1| - 8.4e-05 21.9 0.5 0.058 12.6 0.1 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|261402994|ref|YP_003247218.1| - 0.0019 18.1 2.1 0.0044 16.9 1.1 2.1 1 1 1 2 2 2 1 Glycine cleavage H-protein DUF2118 PF09891.9 gi|261402994|ref|YP_003247218.1| - 0.0044 17.0 0.6 0.016 15.2 0.4 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) DUF561 PF04481.12 gi|261402994|ref|YP_003247218.1| - 0.006 15.8 0.1 0.89 8.7 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF561) ATP-synt_ab_Xtn PF16886.5 gi|261402994|ref|YP_003247218.1| - 0.017 15.0 1.2 0.038 13.8 1.2 1.6 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension YqfD PF06898.11 gi|261402994|ref|YP_003247218.1| - 0.026 13.3 6.8 0.038 12.8 5.9 1.8 1 1 0 1 1 1 0 Putative stage IV sporulation protein YqfD His_biosynth PF00977.21 gi|261402994|ref|YP_003247218.1| - 0.032 13.7 0.0 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein QRPTase_N PF02749.16 gi|261402994|ref|YP_003247218.1| - 0.035 14.2 1.3 0.87 9.7 0.1 2.7 2 1 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain Peptidase_M23 PF01551.22 gi|261402994|ref|YP_003247218.1| - 0.092 13.0 1.4 1.2 9.4 0.2 2.5 1 1 1 2 2 2 0 Peptidase family M23 TGT PF01702.18 gi|261402994|ref|YP_003247218.1| - 0.15 11.2 0.0 0.33 10.0 0.0 1.5 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase PYNP_C PF07831.13 gi|261402994|ref|YP_003247218.1| - 0.76 9.5 4.7 1.7 8.4 0.2 2.9 3 0 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain PTS_EIIA_1 PF00358.20 gi|261402994|ref|YP_003247218.1| - 1.1 9.0 7.1 0.74 9.6 0.3 3.3 2 1 2 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HrcA_DNA-bdg PF03444.15 gi|261402995|ref|YP_003247219.1| - 1.5e-37 127.0 1.0 2.3e-37 126.5 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|261402995|ref|YP_003247219.1| - 3.3e-31 107.5 4.1 3.3e-17 62.7 1.8 3.2 3 0 0 3 3 3 2 CBS domain HTH_11 PF08279.12 gi|261402995|ref|YP_003247219.1| - 4.3e-07 29.8 0.0 1.2e-06 28.4 0.0 1.8 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|261402995|ref|YP_003247219.1| - 2e-06 28.1 0.1 7.4e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_38 PF13936.6 gi|261402995|ref|YP_003247219.1| - 0.0076 16.0 0.4 0.021 14.6 0.4 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain malic PF00390.19 gi|261402995|ref|YP_003247219.1| - 0.037 13.8 1.7 0.27 11.0 0.4 2.1 2 0 0 2 2 2 0 Malic enzyme, N-terminal domain HTH_24 PF13412.6 gi|261402995|ref|YP_003247219.1| - 0.06 12.9 0.6 0.06 12.9 0.6 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|261402995|ref|YP_003247219.1| - 0.069 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LAGLIDADG_WhiA PF14527.6 gi|261402995|ref|YP_003247219.1| - 0.11 12.6 0.5 0.26 11.4 0.5 1.6 1 0 0 1 1 1 0 WhiA LAGLIDADG-like domain Epimerase_2 PF02350.19 gi|261402996|ref|YP_003247220.1| - 1.6e-126 421.8 0.0 1.9e-126 421.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_2 PF13477.6 gi|261402996|ref|YP_003247220.1| - 0.0012 18.9 0.1 0.0064 16.5 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|261402996|ref|YP_003247220.1| - 0.0021 18.1 0.0 0.0092 16.0 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase Family 4 S_layer_C PF05124.12 gi|261402997|ref|YP_003247221.1| - 1.4e-17 64.4 0.2 8.2e-17 61.9 0.2 2.4 1 0 0 1 1 1 1 S-layer like family, C-terminal region Big_7 PF17957.1 gi|261402997|ref|YP_003247221.1| - 1.5e-11 44.9 54.7 0.0008 20.1 1.5 6.8 6 2 0 6 6 6 4 Bacterial Ig domain Peptidase_C1 PF00112.23 gi|261402997|ref|YP_003247221.1| - 9.6e-11 42.2 3.6 2.1e-10 41.1 3.6 1.5 1 0 0 1 1 1 1 Papain family cysteine protease KKLCAg1 PF15204.6 gi|261402997|ref|YP_003247221.1| - 8.2e-07 29.0 9.2 0.0099 16.0 1.2 3.1 2 0 0 2 2 2 2 Kita-kyushu lung cancer antigen 1 Cadherin PF00028.17 gi|261402997|ref|YP_003247221.1| - 0.0041 17.5 3.0 34 5.0 0.1 4.6 3 2 0 4 4 4 0 Cadherin domain HYR PF02494.16 gi|261402997|ref|YP_003247221.1| - 0.0055 17.0 31.9 0.033 14.5 3.9 5.4 1 1 3 4 4 4 2 HYR domain MtrA PF04208.14 gi|261402997|ref|YP_003247221.1| - 0.015 15.0 2.0 6.4 6.4 0.1 3.2 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit A Peptidase_C1_2 PF03051.15 gi|261402997|ref|YP_003247221.1| - 0.024 13.5 0.1 0.049 12.4 0.1 1.4 1 0 0 1 1 1 0 Peptidase C1-like family FctA PF12892.7 gi|261402997|ref|YP_003247221.1| - 0.38 11.6 20.3 2.4 9.0 4.4 3.6 3 2 0 3 3 3 0 Spy0128-like isopeptide containing domain DUF1091 PF06477.13 gi|261402997|ref|YP_003247221.1| - 1.4 9.5 12.5 17 5.9 2.1 4.3 3 2 0 3 3 3 0 Protein of unknown function (DUF1091) Fer4_NifH PF00142.18 gi|261403000|ref|YP_003247224.1| - 2.1e-118 394.6 4.2 2.5e-118 394.5 4.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|261403000|ref|YP_003247224.1| - 6.3e-12 45.7 0.0 1.6e-11 44.4 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|261403000|ref|YP_003247224.1| - 6.7e-12 45.7 0.7 1.4e-10 41.4 0.1 2.4 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|261403000|ref|YP_003247224.1| - 8e-11 41.8 0.5 1e-05 25.1 0.1 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|261403000|ref|YP_003247224.1| - 9.7e-08 31.5 0.2 1.9e-07 30.5 0.2 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|261403000|ref|YP_003247224.1| - 1.7e-05 24.6 0.1 3.5e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|261403000|ref|YP_003247224.1| - 0.0003 19.9 0.1 0.00053 19.0 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|261403000|ref|YP_003247224.1| - 0.00033 21.0 0.0 0.001 19.4 0.0 1.8 2 0 0 2 2 2 1 RNA helicase DUF87 PF01935.17 gi|261403000|ref|YP_003247224.1| - 0.00053 20.1 0.7 0.0015 18.7 0.0 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain CBP_BcsQ PF06564.12 gi|261403000|ref|YP_003247224.1| - 0.0013 18.2 0.0 0.3 10.5 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|261403000|ref|YP_003247224.1| - 0.0014 18.3 0.2 0.0034 17.0 0.2 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MipZ PF09140.11 gi|261403000|ref|YP_003247224.1| - 0.0075 15.6 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|261403000|ref|YP_003247224.1| - 0.013 15.3 0.1 0.08 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|261403000|ref|YP_003247224.1| - 0.029 14.0 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|261403000|ref|YP_003247224.1| - 0.031 14.2 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|261403000|ref|YP_003247224.1| - 0.036 14.5 0.0 0.072 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|261403000|ref|YP_003247224.1| - 0.039 13.7 0.4 0.087 12.6 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|261403000|ref|YP_003247224.1| - 0.067 12.9 0.0 0.31 10.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain HJURP_C PF12347.8 gi|261403000|ref|YP_003247224.1| - 0.1 12.7 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat ABC_tran PF00005.27 gi|261403000|ref|YP_003247224.1| - 0.1 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|261403000|ref|YP_003247224.1| - 0.11 12.5 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.14 gi|261403000|ref|YP_003247224.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) VirC1 PF07015.11 gi|261403000|ref|YP_003247224.1| - 0.12 11.6 0.1 0.23 10.7 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_7 PF12775.7 gi|261403000|ref|YP_003247224.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|261403000|ref|YP_003247224.1| - 0.13 12.5 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain IGPD PF00475.18 gi|261403001|ref|YP_003247225.1| - 6e-54 182.3 0.0 7.7e-54 181.9 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase RNA_binding PF01877.17 gi|261403002|ref|YP_003247226.1| - 3.5e-14 53.1 0.7 4.1e-12 46.4 0.2 2.7 1 1 1 2 2 2 1 RNA binding GCR PF02155.15 gi|261403002|ref|YP_003247226.1| - 0.049 12.7 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Glucocorticoid receptor DUF87 PF01935.17 gi|261403003|ref|YP_003247227.1| - 4.6e-50 170.8 2.6 8.2e-50 170.0 2.6 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|261403003|ref|YP_003247227.1| - 9e-14 51.4 0.5 2.3e-13 50.1 0.5 1.7 1 0 0 1 1 1 1 HAS barrel domain DUF853 PF05872.12 gi|261403003|ref|YP_003247227.1| - 1.9e-09 36.6 0.0 5.5e-06 25.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|261403003|ref|YP_003247227.1| - 1.2e-05 24.4 0.0 4.6e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|261403003|ref|YP_003247227.1| - 0.003 16.5 0.2 2.4 7.0 0.0 2.7 1 1 1 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|261403003|ref|YP_003247227.1| - 0.13 11.6 0.2 7 5.9 0.1 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family CbiA PF01656.23 gi|261403003|ref|YP_003247227.1| - 0.13 12.4 0.1 0.3 11.2 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Flg_bb_rod PF00460.20 gi|261403004|ref|YP_003247228.1| - 0.37 10.8 1.2 0.69 9.9 1.2 1.4 1 0 0 1 1 1 0 Flagella basal body rod protein LigT_PEase PF02834.16 gi|261403006|ref|YP_003247230.1| - 6.9e-32 109.5 0.0 3.9e-16 59.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|261403006|ref|YP_003247230.1| - 2.4e-11 43.8 0.0 2.9e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|261403006|ref|YP_003247230.1| - 9.8e-10 38.7 0.1 7.9e-09 35.7 0.1 1.9 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Peptidase_C32 PF05411.12 gi|261403006|ref|YP_003247230.1| - 0.018 15.0 0.0 0.056 13.4 0.0 1.7 2 0 0 2 2 2 0 Equine arteritis virus putative proteinase Trm112p PF03966.16 gi|261403007|ref|YP_003247231.1| - 3.9e-06 27.4 1.1 1.7e-05 25.3 1.1 1.8 1 1 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.12 gi|261403007|ref|YP_003247231.1| - 2.2e-05 23.8 0.5 2.9e-05 23.5 0.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding FAM76 PF16046.5 gi|261403007|ref|YP_003247231.1| - 0.0015 17.9 0.5 0.0015 17.9 0.5 1.0 1 0 0 1 1 1 1 FAM76 protein DZR PF12773.7 gi|261403007|ref|YP_003247231.1| - 0.0021 18.0 0.3 0.0031 17.5 0.3 1.3 1 1 0 1 1 1 1 Double zinc ribbon zf_Rg PF17915.1 gi|261403007|ref|YP_003247231.1| - 0.0025 17.2 0.7 0.0031 16.9 0.7 1.2 1 0 0 1 1 1 1 Reverse gyrase zinc finger Zn_Tnp_IS1595 PF12760.7 gi|261403007|ref|YP_003247231.1| - 0.0025 17.8 0.6 0.003 17.5 0.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|261403007|ref|YP_003247231.1| - 0.0026 18.1 0.2 0.0031 17.8 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar ADK_lid PF05191.14 gi|261403007|ref|YP_003247231.1| - 0.0033 17.3 1.1 0.028 14.4 0.0 2.1 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf-C2HC_2 PF13913.6 gi|261403007|ref|YP_003247231.1| - 0.0052 16.7 4.3 0.29 11.1 0.1 2.1 2 0 0 2 2 2 2 zinc-finger of a C2HC-type Auto_anti-p27 PF06677.12 gi|261403007|ref|YP_003247231.1| - 0.0099 16.0 1.3 0.013 15.6 1.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) A2L_zn_ribbon PF08792.10 gi|261403007|ref|YP_003247231.1| - 0.012 15.3 1.9 0.032 13.9 1.9 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|261403007|ref|YP_003247231.1| - 0.013 15.4 0.6 0.36 10.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain PHD PF00628.29 gi|261403007|ref|YP_003247231.1| - 0.015 15.2 0.6 0.02 14.8 0.6 1.2 1 0 0 1 1 1 0 PHD-finger Prok-RING_1 PF14446.6 gi|261403007|ref|YP_003247231.1| - 0.023 14.6 1.2 0.15 12.0 0.8 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-C2H2_4 PF13894.6 gi|261403007|ref|YP_003247231.1| - 0.034 15.0 0.2 8.4 7.5 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.6 gi|261403007|ref|YP_003247231.1| - 0.066 12.6 5.2 0.44 10.0 1.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DpnI PF06044.12 gi|261403007|ref|YP_003247231.1| - 0.11 12.2 0.5 0.11 12.1 0.5 1.0 1 0 0 1 1 1 0 Dam-replacing family zf-AN1 PF01428.16 gi|261403007|ref|YP_003247231.1| - 0.11 12.7 2.7 5.1 7.3 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_10 PF10058.9 gi|261403007|ref|YP_003247231.1| - 0.22 11.2 5.9 1.4 8.7 5.9 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein GATase_2 PF00310.21 gi|261403008|ref|YP_003247232.1| - 6.8e-10 38.2 0.4 5.7e-08 31.9 0.4 2.4 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|261403008|ref|YP_003247232.1| - 3.7e-09 36.9 0.0 5.2e-08 33.2 0.0 2.2 1 1 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|261403008|ref|YP_003247232.1| - 0.00023 21.1 0.0 0.26 11.2 0.0 2.5 2 1 0 2 2 2 2 Glutamine amidotransferase domain Glu_synthase PF01645.17 gi|261403009|ref|YP_003247233.1| - 1.5e-150 501.5 0.1 1.5e-150 501.5 0.1 1.4 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|261403009|ref|YP_003247233.1| - 2.1e-14 53.7 0.1 1.5e-07 31.2 0.0 2.3 2 0 0 2 2 2 2 Glutamate synthase central domain FMN_dh PF01070.18 gi|261403009|ref|YP_003247233.1| - 5.6e-13 48.6 5.7 1.6e-09 37.3 2.3 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|261403009|ref|YP_003247233.1| - 8.8e-10 38.1 3.9 1.3e-07 30.9 2.9 3.0 3 1 0 3 3 3 1 IMP dehydrogenase / GMP reductase domain Fer4_7 PF12838.7 gi|261403009|ref|YP_003247233.1| - 7.3e-08 32.9 12.9 0.00076 20.0 0.5 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain NMO PF03060.15 gi|261403009|ref|YP_003247233.1| - 1.2e-07 31.4 2.8 2.3e-07 30.5 2.8 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|261403009|ref|YP_003247233.1| - 6.2e-05 22.3 5.4 0.00033 20.0 2.7 2.8 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Fer4_21 PF14697.6 gi|261403009|ref|YP_003247233.1| - 0.00021 21.3 9.0 0.00021 21.3 9.0 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261403009|ref|YP_003247233.1| - 0.00029 20.5 23.6 0.00035 20.3 1.9 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403009|ref|YP_003247233.1| - 0.00035 20.6 17.9 0.068 13.3 13.5 3.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403009|ref|YP_003247233.1| - 0.0012 19.0 16.7 0.0017 18.5 10.8 2.8 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403009|ref|YP_003247233.1| - 0.0016 18.5 1.8 0.0016 18.5 1.8 3.5 3 0 0 3 3 3 1 4Fe-4S binding domain His_biosynth PF00977.21 gi|261403009|ref|YP_003247233.1| - 0.0017 17.8 0.1 0.0044 16.5 0.1 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein Fer4_16 PF13484.6 gi|261403009|ref|YP_003247233.1| - 0.0019 19.1 1.2 0.0019 19.1 1.2 3.4 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261403009|ref|YP_003247233.1| - 0.16 12.2 23.1 0.096 12.8 2.6 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403009|ref|YP_003247233.1| - 1.1 9.8 17.4 1.5 9.3 3.1 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403009|ref|YP_003247233.1| - 2.1 8.9 16.9 2.9 8.5 1.9 3.4 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261403009|ref|YP_003247233.1| - 3.2 8.0 8.7 19 5.5 8.7 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain GXGXG PF01493.19 gi|261403010|ref|YP_003247234.1| - 1.8e-45 154.9 7.6 2.3e-45 154.5 7.6 1.1 1 0 0 1 1 1 1 GXGXG motif Ribosomal_L10 PF00466.20 gi|261403010|ref|YP_003247234.1| - 0.031 14.4 0.1 11 6.2 0.0 3.1 3 0 0 3 3 3 0 Ribosomal protein L10 FrhB_FdhB_C PF04432.13 gi|261403011|ref|YP_003247235.1| - 4.1e-35 120.9 0.0 7.3e-35 120.1 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|261403011|ref|YP_003247235.1| - 4e-18 65.3 0.0 7e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.27 gi|261403011|ref|YP_003247235.1| - 2.6e-07 30.2 2.6 2.6e-07 30.2 2.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403011|ref|YP_003247235.1| - 1.2e-06 28.3 2.6 1.2e-06 28.3 2.6 3.0 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403011|ref|YP_003247235.1| - 1.3e-06 28.7 1.7 0.0099 16.3 0.7 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403011|ref|YP_003247235.1| - 3e-05 23.8 4.2 3e-05 23.8 4.2 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403011|ref|YP_003247235.1| - 0.00017 22.1 16.3 0.00017 22.1 16.3 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403011|ref|YP_003247235.1| - 0.00029 20.9 16.6 0.00029 20.9 16.6 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403011|ref|YP_003247235.1| - 0.00031 21.0 2.3 0.00031 21.0 2.3 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261403011|ref|YP_003247235.1| - 0.007 16.5 0.7 0.007 16.5 0.7 3.0 3 1 1 4 4 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403011|ref|YP_003247235.1| - 0.0074 16.8 11.0 0.01 16.4 0.5 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403011|ref|YP_003247235.1| - 0.011 15.9 3.0 0.011 15.9 3.0 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261403011|ref|YP_003247235.1| - 0.014 15.9 8.1 0.058 13.9 1.1 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|261403011|ref|YP_003247235.1| - 0.018 16.0 18.4 0.034 15.1 16.6 2.5 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|261403011|ref|YP_003247235.1| - 0.15 12.9 0.9 0.15 12.9 0.9 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403011|ref|YP_003247235.1| - 0.35 11.9 23.7 0.095 13.7 6.4 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|261403011|ref|YP_003247235.1| - 0.36 11.6 8.4 0.68 10.7 4.0 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|261403011|ref|YP_003247235.1| - 1.4 9.1 10.8 2.7 8.2 5.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Trp_syntA PF00290.20 gi|261403012|ref|YP_003247236.1| - 3.7e-93 311.1 0.1 4.4e-93 310.9 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|261403012|ref|YP_003247236.1| - 7.5e-06 25.6 0.1 2.3e-05 24.0 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein BtpA PF03437.15 gi|261403012|ref|YP_003247236.1| - 0.00014 21.4 0.1 0.00031 20.3 0.1 1.5 1 1 0 1 1 1 1 BtpA family PcrB PF01884.17 gi|261403012|ref|YP_003247236.1| - 0.00016 21.2 0.7 0.0016 17.9 0.4 2.2 2 0 0 2 2 2 1 PcrB family Glyco_tran_WecB PF03808.13 gi|261403012|ref|YP_003247236.1| - 0.017 15.1 0.0 0.26 11.2 0.0 2.4 1 1 1 2 2 2 0 Glycosyl transferase WecB/TagA/CpsF family Tnp_22_trimer PF17489.2 gi|261403012|ref|YP_003247236.1| - 0.29 11.1 1.4 0.73 9.8 0.5 2.2 1 1 1 2 2 2 0 L1 transposable element trimerization domain PALP PF00291.25 gi|261403013|ref|YP_003247237.1| - 1.2e-50 172.6 0.3 1.6e-50 172.2 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Fibrillarin PF01269.17 gi|261403014|ref|YP_003247238.1| - 3.3e-101 337.1 0.7 3.7e-101 337.0 0.7 1.0 1 0 0 1 1 1 1 Fibrillarin MTS PF05175.14 gi|261403014|ref|YP_003247238.1| - 0.012 15.1 0.1 0.024 14.2 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|261403014|ref|YP_003247238.1| - 0.066 13.9 0.0 0.22 12.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain PUA PF01472.20 gi|261403015|ref|YP_003247239.1| - 3.3e-22 78.2 2.6 3.3e-22 78.2 2.6 1.5 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|261403015|ref|YP_003247239.1| - 2e-13 50.4 3.7 3.9e-13 49.5 3.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) Pre-PUA PF17832.1 gi|261403015|ref|YP_003247239.1| - 8.8e-11 42.3 0.5 1.5e-10 41.6 0.5 1.3 1 0 0 1 1 1 1 Pre-PUA-like domain UPF0113 PF03657.13 gi|261403015|ref|YP_003247239.1| - 4.1e-05 23.8 0.3 4.1e-05 23.8 0.3 2.0 2 1 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|261403015|ref|YP_003247239.1| - 0.16 11.8 0.7 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 PUA-like domain DUF5442 PF17514.2 gi|261403016|ref|YP_003247240.1| - 0.046 13.9 0.2 0.093 12.9 0.2 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5442) CCM2_C PF16545.5 gi|261403016|ref|YP_003247240.1| - 0.067 13.7 0.5 0.18 12.3 0.5 1.8 1 0 0 1 1 1 0 Cerebral cavernous malformation protein, harmonin-homology S_4TM PF18159.1 gi|261403016|ref|YP_003247240.1| - 0.084 12.2 0.5 0.14 11.4 0.5 1.3 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain DUF2975 PF11188.8 gi|261403016|ref|YP_003247240.1| - 0.13 12.2 1.8 0.24 11.3 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) ATPase_gene1 PF09527.10 gi|261403017|ref|YP_003247241.1| - 7.1e-06 26.1 6.6 8.4e-06 25.9 6.6 1.1 1 0 0 1 1 1 1 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter MFS_2 PF13347.6 gi|261403017|ref|YP_003247241.1| - 0.0037 15.9 0.0 0.004 15.8 0.0 1.0 1 0 0 1 1 1 1 MFS/sugar transport protein 2TM PF13239.6 gi|261403017|ref|YP_003247241.1| - 0.024 15.0 1.7 0.027 14.8 1.7 1.1 1 0 0 1 1 1 0 2TM domain DUF2721 PF11026.8 gi|261403017|ref|YP_003247241.1| - 0.072 13.0 1.0 0.087 12.7 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF2207 PF09972.9 gi|261403017|ref|YP_003247241.1| - 0.1 11.4 0.9 0.1 11.4 0.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) UPF0154 PF03672.13 gi|261403017|ref|YP_003247241.1| - 1.2 9.3 3.8 5.2 7.2 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) LapA_dom PF06305.11 gi|261403017|ref|YP_003247241.1| - 3.6 7.5 7.9 13 5.7 3.4 2.3 2 1 0 2 2 2 0 Lipopolysaccharide assembly protein A domain FixQ PF05545.11 gi|261403017|ref|YP_003247241.1| - 8.6 6.4 8.3 1 9.4 0.2 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ TruB_N PF01509.18 gi|261403018|ref|YP_003247242.1| - 1.9e-26 93.2 0.0 4.4e-23 82.3 0.0 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|261403018|ref|YP_003247242.1| - 2.2e-23 82.2 0.0 4.4e-23 81.2 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|261403018|ref|YP_003247242.1| - 6.6e-21 74.1 0.0 1.7e-19 69.6 0.1 2.4 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.20 gi|261403018|ref|YP_003247242.1| - 3.7e-17 62.0 2.7 7.3e-17 61.1 2.7 1.5 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|261403018|ref|YP_003247242.1| - 2e-05 24.8 1.2 4.3e-05 23.7 0.2 2.1 3 0 0 3 3 3 1 UPF0113 PUA domain Methyltransf_11 PF08241.12 gi|261403019|ref|YP_003247243.1| - 8.9e-11 42.3 0.0 1.6e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403019|ref|YP_003247243.1| - 5.5e-10 39.8 0.0 1e-09 39.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|261403019|ref|YP_003247243.1| - 6.7e-10 39.0 0.0 1.1e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|261403019|ref|YP_003247243.1| - 4.1e-08 33.0 0.0 6.7e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|261403019|ref|YP_003247243.1| - 2.3e-07 30.7 0.0 3.9e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.10 gi|261403019|ref|YP_003247243.1| - 7.3e-07 28.9 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|261403019|ref|YP_003247243.1| - 8.8e-07 28.9 0.0 1.7e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein N6_N4_Mtase PF01555.18 gi|261403019|ref|YP_003247243.1| - 1.6e-06 28.0 0.4 0.00025 20.8 0.0 2.6 3 0 0 3 3 3 1 DNA methylase Ubie_methyltran PF01209.18 gi|261403019|ref|YP_003247243.1| - 1.6e-06 27.6 0.0 4.7e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_30 PF05430.11 gi|261403019|ref|YP_003247243.1| - 1.4e-05 25.0 0.0 2.9e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.6 gi|261403019|ref|YP_003247243.1| - 4e-05 23.5 0.0 9e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.17 gi|261403019|ref|YP_003247243.1| - 5.3e-05 22.7 0.0 8.1e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Spermine/spermidine synthase domain N6_Mtase PF02384.16 gi|261403019|ref|YP_003247243.1| - 0.00031 20.1 0.0 0.00062 19.1 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase SAM_MT PF04445.13 gi|261403019|ref|YP_003247243.1| - 0.0008 18.9 0.0 0.0038 16.7 0.0 1.9 2 0 0 2 2 2 1 Putative SAM-dependent methyltransferase CMAS PF02353.20 gi|261403019|ref|YP_003247243.1| - 0.0025 17.1 0.0 0.0041 16.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|261403019|ref|YP_003247243.1| - 0.005 16.6 0.0 0.036 13.8 0.0 2.2 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.6 gi|261403019|ref|YP_003247243.1| - 0.0083 17.1 0.0 0.016 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DUF1965 PF09248.10 gi|261403019|ref|YP_003247243.1| - 0.065 13.0 0.0 0.47 10.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1965) MetW PF07021.12 gi|261403019|ref|YP_003247243.1| - 0.065 12.8 0.1 0.12 12.0 0.1 1.4 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|261403019|ref|YP_003247243.1| - 0.089 12.6 0.0 0.31 10.9 0.0 1.9 2 1 0 2 2 2 0 Hypothetical methyltransferase UPF0020 PF01170.18 gi|261403019|ref|YP_003247243.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TrmB PF01978.19 gi|261403020|ref|YP_003247244.1| - 2.9e-20 71.9 0.0 4.1e-20 71.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|261403020|ref|YP_003247244.1| - 3.3e-07 30.1 0.0 4.3e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|261403020|ref|YP_003247244.1| - 4.4e-06 26.5 0.0 6.5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|261403020|ref|YP_003247244.1| - 1.8e-05 24.4 0.0 2.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|261403020|ref|YP_003247244.1| - 2.8e-05 23.9 0.3 3.7e-05 23.5 0.3 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.6 gi|261403020|ref|YP_003247244.1| - 2.9e-05 23.5 0.0 4.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|261403020|ref|YP_003247244.1| - 0.0016 18.3 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|261403020|ref|YP_003247244.1| - 0.0027 17.6 0.1 0.004 17.1 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|261403020|ref|YP_003247244.1| - 0.0037 17.0 0.1 0.0064 16.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|261403020|ref|YP_003247244.1| - 0.0037 17.4 0.0 0.009 16.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|261403020|ref|YP_003247244.1| - 0.0048 16.5 0.2 0.0081 15.8 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|261403020|ref|YP_003247244.1| - 0.0087 16.4 0.1 0.012 16.0 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_11 PF08279.12 gi|261403020|ref|YP_003247244.1| - 0.01 15.7 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain HrcA_DNA-bdg PF03444.15 gi|261403020|ref|YP_003247244.1| - 0.013 15.2 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|261403020|ref|YP_003247244.1| - 0.016 15.6 0.0 0.028 14.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Dimerisation2 PF16864.5 gi|261403020|ref|YP_003247244.1| - 0.022 14.7 0.0 0.04 13.9 0.0 1.4 1 1 0 1 1 1 0 Dimerisation domain HTH_27 PF13463.6 gi|261403020|ref|YP_003247244.1| - 0.025 15.1 0.0 0.043 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain ESCRT-II PF05871.12 gi|261403020|ref|YP_003247244.1| - 0.027 14.7 0.2 0.034 14.4 0.2 1.2 1 0 0 1 1 1 0 ESCRT-II complex subunit HTH_5 PF01022.20 gi|261403020|ref|YP_003247244.1| - 0.076 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_47 PF16221.5 gi|261403020|ref|YP_003247244.1| - 0.079 12.5 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 winged helix-turn-helix HTH_Tnp_Tc3_1 PF11427.8 gi|261403020|ref|YP_003247244.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Tc3 transposase Lactamase_B_2 PF12706.7 gi|261403021|ref|YP_003247245.1| - 4.5e-18 65.5 0.0 9.4e-17 61.2 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|261403021|ref|YP_003247245.1| - 1.2e-09 38.4 0.6 2.1e-09 37.7 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|261403021|ref|YP_003247245.1| - 1.5e-05 24.6 0.0 3.1e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 tRNase Z endonuclease F420_oxidored PF03807.17 gi|261403022|ref|YP_003247246.1| - 1.7e-21 76.6 2.3 4.4e-21 75.3 0.4 2.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|261403022|ref|YP_003247246.1| - 6.6e-05 23.3 1.0 0.00029 21.2 0.2 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|261403022|ref|YP_003247246.1| - 0.00025 21.3 0.3 0.0012 19.2 0.1 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|261403022|ref|YP_003247246.1| - 0.00081 19.4 0.0 0.0012 18.8 0.0 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|261403022|ref|YP_003247246.1| - 0.0015 17.6 0.2 0.0031 16.5 0.2 1.5 1 1 0 1 1 1 1 Prephenate dehydrogenase TrkA_N PF02254.18 gi|261403022|ref|YP_003247246.1| - 0.013 15.7 0.6 0.023 14.9 0.1 1.6 2 0 0 2 2 2 0 TrkA-N domain PTS_IIB PF02302.17 gi|261403022|ref|YP_003247246.1| - 0.019 15.6 2.5 0.98 10.2 0.2 2.3 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit ApbA PF02558.16 gi|261403022|ref|YP_003247246.1| - 0.057 13.1 0.7 0.16 11.6 0.2 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Exo70 PF03081.15 gi|261403022|ref|YP_003247246.1| - 0.088 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Exo70 exocyst complex subunit Rep_1 PF01446.17 gi|261403022|ref|YP_003247246.1| - 0.14 11.6 0.0 4.3 6.7 0.0 2.1 1 1 1 2 2 2 0 Replication protein UPF0254 PF06787.11 gi|261403023|ref|YP_003247247.1| - 6.2e-61 204.9 0.3 7.1e-61 204.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0254) CinA PF02464.17 gi|261403023|ref|YP_003247247.1| - 0.068 12.7 0.1 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Competence-damaged protein DBC1 PF14443.6 gi|261403023|ref|YP_003247247.1| - 0.12 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 DBC1 Methyltransf_11 PF08241.12 gi|261403024|ref|YP_003247248.1| - 3.6e-19 69.2 0.1 5.6e-19 68.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403024|ref|YP_003247248.1| - 1.1e-16 61.4 0.1 2.6e-16 60.1 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403024|ref|YP_003247248.1| - 9.9e-12 45.0 0.0 1.3e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|261403024|ref|YP_003247248.1| - 3.2e-10 40.0 0.2 5.4e-10 39.3 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|261403024|ref|YP_003247248.1| - 7.7e-10 38.5 0.1 1.1e-09 38.0 0.1 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|261403024|ref|YP_003247248.1| - 9.5e-09 35.9 0.1 2e-08 34.9 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|261403024|ref|YP_003247248.1| - 0.00036 20.2 0.1 0.0007 19.2 0.1 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|261403024|ref|YP_003247248.1| - 0.00072 18.9 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase N6_N4_Mtase PF01555.18 gi|261403024|ref|YP_003247248.1| - 0.0011 18.7 1.4 0.054 13.2 0.3 2.3 2 0 0 2 2 2 1 DNA methylase DUF520 PF04461.13 gi|261403024|ref|YP_003247248.1| - 0.043 13.9 0.5 0.076 13.1 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF520) PcrB PF01884.17 gi|261403025|ref|YP_003247249.1| - 8.3e-90 300.2 2.7 9.6e-90 300.0 2.7 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.20 gi|261403025|ref|YP_003247249.1| - 3.4e-05 22.8 0.2 0.11 11.3 0.0 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|261403025|ref|YP_003247249.1| - 0.00063 19.3 0.1 0.0019 17.7 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NanE PF04131.14 gi|261403025|ref|YP_003247249.1| - 0.0045 16.2 0.5 2.2 7.4 0.1 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase PTS_IIB PF02302.17 gi|261403025|ref|YP_003247249.1| - 0.027 15.2 2.0 1.7 9.4 0.2 2.2 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit BtpA PF03437.15 gi|261403025|ref|YP_003247249.1| - 0.029 13.8 0.1 0.71 9.3 0.0 2.0 2 0 0 2 2 2 0 BtpA family DHO_dh PF01180.21 gi|261403025|ref|YP_003247249.1| - 0.039 13.2 0.7 0.058 12.6 0.1 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase MoCF_biosynth PF00994.24 gi|261403025|ref|YP_003247249.1| - 0.05 13.3 0.0 0.082 12.6 0.0 1.4 1 0 0 1 1 1 0 Probable molybdopterin binding domain G3P_antiterm PF04309.12 gi|261403025|ref|YP_003247249.1| - 0.053 12.9 0.3 4.4 6.7 0.0 2.5 2 1 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Spore_YhaL PF14147.6 gi|261403025|ref|YP_003247249.1| - 0.074 12.7 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 Sporulation protein YhaL IMPDH PF00478.25 gi|261403025|ref|YP_003247249.1| - 0.094 11.7 0.8 0.87 8.5 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHQS PF01959.16 gi|261403026|ref|YP_003247250.1| - 3.5e-148 493.2 0.6 3.9e-148 493.1 0.6 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II CdhD PF03599.16 gi|261403026|ref|YP_003247250.1| - 0.00043 19.1 1.7 0.2 10.3 0.4 2.3 1 1 1 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit Hint PF01079.20 gi|261403026|ref|YP_003247250.1| - 0.004 16.7 0.0 0.11 12.0 0.0 2.3 2 0 0 2 2 2 1 Hint module Prot_ATP_ID_OB PF16450.5 gi|261403026|ref|YP_003247250.1| - 0.0077 16.2 0.4 1.5 8.9 0.0 3.5 3 1 0 3 3 3 1 Proteasomal ATPase OB C-terminal domain DUF1953 PF09196.10 gi|261403026|ref|YP_003247250.1| - 0.016 15.0 0.6 0.62 9.9 0.1 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF1953) sCache_like PF16736.5 gi|261403026|ref|YP_003247250.1| - 0.14 12.2 0.6 0.41 10.8 0.6 1.7 1 0 0 1 1 1 0 Single Cache-like Glyco_hydr_30_2 PF14587.6 gi|261403026|ref|YP_003247250.1| - 0.18 11.4 0.0 0.25 10.9 0.0 1.1 1 0 0 1 1 1 0 O-Glycosyl hydrolase family 30 FIST PF08495.10 gi|261403027|ref|YP_003247251.1| - 3.1e-26 92.4 0.0 6.9e-26 91.3 0.0 1.6 2 0 0 2 2 2 1 FIST N domain TrmB PF01978.19 gi|261403027|ref|YP_003247251.1| - 2.8e-09 36.7 0.1 8.9e-09 35.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FIST_C PF10442.9 gi|261403027|ref|YP_003247251.1| - 7.4e-08 32.4 0.0 1.9e-07 31.1 0.0 1.7 1 1 0 1 1 1 1 FIST C domain HTH_5 PF01022.20 gi|261403027|ref|YP_003247251.1| - 0.012 15.4 0.7 0.026 14.4 0.7 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|261403027|ref|YP_003247251.1| - 0.012 15.6 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|261403027|ref|YP_003247251.1| - 0.021 14.4 0.1 0.079 12.5 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|261403027|ref|YP_003247251.1| - 0.085 12.8 0.2 0.25 11.4 0.2 1.8 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|261403027|ref|YP_003247251.1| - 0.095 13.1 0.1 0.24 11.8 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF4795 PF16043.5 gi|261403027|ref|YP_003247251.1| - 1.2 8.6 5.0 0.83 9.2 3.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) PALP PF00291.25 gi|261403028|ref|YP_003247252.1| - 5.8e-82 275.4 0.1 6.8e-82 275.2 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|261403028|ref|YP_003247252.1| - 0.068 13.3 0.0 2.1 8.6 0.0 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Sigma70_r4_2 PF08281.12 gi|261403029|ref|YP_003247253.1| - 7.9e-05 22.3 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 DNA_pol3_delta PF06144.13 gi|261403029|ref|YP_003247253.1| - 0.0013 18.5 2.1 0.016 15.0 0.1 2.1 1 1 1 2 2 2 2 DNA polymerase III, delta subunit GerE PF00196.19 gi|261403029|ref|YP_003247253.1| - 0.0071 15.9 1.5 0.041 13.4 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family KR PF08659.10 gi|261403029|ref|YP_003247253.1| - 0.18 11.7 0.0 0.23 11.3 0.0 1.1 1 0 0 1 1 1 0 KR domain PIN_6 PF17146.4 gi|261403030|ref|YP_003247254.1| - 2.3e-15 56.9 0.0 3.8e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|261403030|ref|YP_003247254.1| - 1e-06 28.3 0.0 1.7e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 PINc domain ribonuclease PIN_2 PF10130.9 gi|261403030|ref|YP_003247254.1| - 0.00069 19.9 0.0 0.001 19.3 0.0 1.3 1 0 0 1 1 1 1 PIN domain zf-RanBP PF00641.18 gi|261403030|ref|YP_003247254.1| - 0.0041 16.4 2.4 0.097 12.0 0.7 2.2 2 0 0 2 2 2 1 Zn-finger in Ran binding protein and others PIN PF01850.21 gi|261403030|ref|YP_003247254.1| - 0.005 17.3 0.0 0.039 14.4 0.0 2.0 1 1 0 1 1 1 1 PIN domain ADK_lid PF05191.14 gi|261403030|ref|YP_003247254.1| - 0.0077 16.2 2.1 0.016 15.1 2.1 1.6 1 0 0 1 1 1 1 Adenylate kinase, active site lid Nudix_N_2 PF14803.6 gi|261403030|ref|YP_003247254.1| - 0.12 12.3 0.9 15 5.6 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal zf-HIT PF04438.16 gi|261403030|ref|YP_003247254.1| - 0.84 9.6 5.1 1.5 8.8 2.4 2.1 1 1 1 2 2 2 0 HIT zinc finger Meth_synt_2 PF01717.18 gi|261403031|ref|YP_003247255.1| - 7e-49 166.9 0.1 4.1e-48 164.3 0.1 1.9 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|261403031|ref|YP_003247255.1| - 6.2e-05 22.7 0.1 9.4e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain NAD_synthase PF02540.17 gi|261403032|ref|YP_003247256.1| - 8.3e-05 21.8 0.0 0.00014 21.0 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|261403032|ref|YP_003247256.1| - 0.00069 19.2 0.4 0.0022 17.5 0.1 2.0 2 1 0 2 2 2 1 Queuosine biosynthesis protein QueC DUF4488 PF14869.6 gi|261403032|ref|YP_003247256.1| - 0.088 12.7 0.1 0.28 11.1 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4488) Methyltrn_RNA_2 PF04013.12 gi|261403033|ref|YP_003247257.1| - 5.9e-80 267.6 0.0 6.6e-80 267.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase PhoU PF01895.19 gi|261403034|ref|YP_003247258.1| - 3.9e-20 72.1 9.4 6.1e-13 49.0 2.2 2.7 2 1 0 2 2 2 2 PhoU domain HTH_24 PF13412.6 gi|261403034|ref|YP_003247258.1| - 7.1e-08 31.9 0.2 1.8e-07 30.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|261403034|ref|YP_003247258.1| - 2.8e-06 27.1 0.4 4.1e-05 23.4 0.1 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|261403034|ref|YP_003247258.1| - 0.00021 21.1 0.0 0.00066 19.5 0.0 1.8 2 0 0 2 2 1 1 MarR family Rrf2 PF02082.20 gi|261403034|ref|YP_003247258.1| - 0.00041 20.6 0.1 0.0014 19.0 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|261403034|ref|YP_003247258.1| - 0.00062 19.6 0.7 0.00062 19.6 0.7 2.9 2 2 1 3 3 3 1 TFIIE alpha subunit Sigma70_r4 PF04545.16 gi|261403034|ref|YP_003247258.1| - 0.00068 19.1 0.1 0.0017 17.8 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|261403034|ref|YP_003247258.1| - 0.00073 19.5 0.0 0.0017 18.3 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|261403034|ref|YP_003247258.1| - 0.0011 18.8 0.0 0.0041 17.0 0.0 1.9 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|261403034|ref|YP_003247258.1| - 0.0015 18.4 0.0 0.0035 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family KORA PF16509.5 gi|261403034|ref|YP_003247258.1| - 0.0043 17.3 0.1 0.42 10.9 0.0 3.0 3 0 0 3 3 3 1 TrfB plasmid transcriptional repressor HTH_3 PF01381.22 gi|261403034|ref|YP_003247258.1| - 0.0044 17.1 0.1 0.014 15.5 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|261403034|ref|YP_003247258.1| - 0.0076 16.0 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.7 gi|261403034|ref|YP_003247258.1| - 0.0085 16.1 2.1 0.028 14.5 0.0 2.8 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|261403034|ref|YP_003247258.1| - 0.0089 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|261403034|ref|YP_003247258.1| - 0.02 14.9 0.0 0.059 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HIRAN PF08797.11 gi|261403034|ref|YP_003247258.1| - 0.08 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 HIRAN domain Phage_rep_O PF04492.13 gi|261403034|ref|YP_003247258.1| - 0.082 13.5 0.1 12 6.5 0.0 2.4 2 0 0 2 2 2 0 Bacteriophage replication protein O HTH_29 PF13551.6 gi|261403034|ref|YP_003247258.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF3835 PF12927.7 gi|261403034|ref|YP_003247258.1| - 0.82 10.6 0.0 0.82 10.6 0.0 2.3 3 0 0 3 3 2 0 Domain of unknown function (DUF3835) V-SNARE PF05008.15 gi|261403034|ref|YP_003247258.1| - 1.3 9.5 6.4 0.29 11.5 1.3 2.7 2 2 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus GXGXG PF01493.19 gi|261403035|ref|YP_003247259.1| - 1.4e-14 54.1 8.7 1.4e-08 34.6 1.4 2.5 2 0 0 2 2 2 2 GXGXG motif ANAPC3 PF12895.7 gi|261403036|ref|YP_003247260.1| - 1e-05 25.7 0.1 8.9e-05 22.6 0.1 1.8 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|261403036|ref|YP_003247260.1| - 1.2e-05 25.7 0.1 0.00018 21.9 0.0 2.6 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|261403036|ref|YP_003247260.1| - 4.9e-05 23.1 1.5 0.39 10.9 0.0 3.5 4 0 0 4 4 3 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|261403036|ref|YP_003247260.1| - 0.00013 21.7 0.3 0.8 9.7 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|261403036|ref|YP_003247260.1| - 0.00065 20.3 0.0 0.19 12.6 0.0 2.9 2 1 1 3 3 3 1 Tetratricopeptide repeat Type_III_YscG PF09477.10 gi|261403036|ref|YP_003247260.1| - 0.00098 19.2 0.8 0.029 14.4 0.1 2.2 1 1 0 2 2 2 1 Bacterial type II secretion system chaperone protein (type_III_yscG) Clathrin_H_link PF13838.6 gi|261403036|ref|YP_003247260.1| - 0.0021 17.9 0.0 1.8 8.6 0.0 2.9 2 1 1 3 3 3 1 Clathrin-H-link ATP13 PF12921.7 gi|261403036|ref|YP_003247260.1| - 0.0046 16.8 0.2 0.023 14.5 0.1 2.3 1 1 1 2 2 2 1 Mitochondrial ATPase expression TPR_12 PF13424.6 gi|261403036|ref|YP_003247260.1| - 0.0047 17.2 0.1 0.067 13.5 0.0 2.3 2 0 0 2 2 2 1 Tetratricopeptide repeat SRP_TPR_like PF17004.5 gi|261403036|ref|YP_003247260.1| - 0.018 15.0 8.0 0.3 11.1 7.5 2.1 1 1 0 1 1 1 0 Putative TPR-like repeat TPR_6 PF13174.6 gi|261403036|ref|YP_003247260.1| - 0.026 15.1 0.5 0.61 10.9 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|261403036|ref|YP_003247260.1| - 0.039 14.0 0.1 16 5.8 0.1 2.9 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|261403036|ref|YP_003247260.1| - 0.048 13.5 1.2 5.4 7.0 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat MiaE PF06175.11 gi|261403036|ref|YP_003247260.1| - 0.05 13.2 1.8 0.055 13.1 1.8 1.0 1 0 0 1 1 1 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) YqaH PF17448.2 gi|261403036|ref|YP_003247260.1| - 0.056 13.7 3.4 0.21 11.9 1.4 2.3 1 1 2 3 3 3 0 Uncharacterized YqaH-like PPR_2 PF13041.6 gi|261403036|ref|YP_003247260.1| - 0.083 13.1 0.3 68 3.8 0.1 3.8 4 0 0 4 4 4 0 PPR repeat family MA3 PF02847.17 gi|261403036|ref|YP_003247260.1| - 0.25 11.3 6.5 3.1 7.8 0.1 2.8 1 1 2 3 3 3 0 MA3 domain TPR_8 PF13181.6 gi|261403036|ref|YP_003247260.1| - 0.34 11.3 7.9 4.1 7.9 0.1 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat TRAM PF01938.20 gi|261403037|ref|YP_003247261.1| - 3.4e-17 62.2 1.7 4.3e-17 61.9 1.7 1.2 1 0 0 1 1 1 1 TRAM domain DUF824 PF05688.11 gi|261403037|ref|YP_003247261.1| - 0.042 13.7 0.5 8.7 6.3 0.2 2.3 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) PAP2_3 PF14378.6 gi|261403038|ref|YP_003247262.1| - 3.5e-11 43.1 9.8 6.8e-11 42.2 9.8 1.5 1 1 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|261403038|ref|YP_003247262.1| - 5e-07 29.6 7.8 5e-07 29.6 7.8 2.4 2 1 1 3 3 3 1 PAP2 superfamily PAP2_C PF14360.6 gi|261403038|ref|YP_003247262.1| - 3 8.4 8.3 0.16 12.5 1.5 2.3 2 1 0 2 2 2 0 PAP2 superfamily C-terminal TPP_enzyme_N PF02776.18 gi|261403039|ref|YP_003247263.1| - 4.2e-38 130.6 0.0 7.8e-38 129.8 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|261403039|ref|YP_003247263.1| - 5.5e-25 87.9 0.1 1.5e-22 80.0 0.1 2.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|261403039|ref|YP_003247263.1| - 3.5e-09 36.5 0.0 7.3e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF4957 PF16318.5 gi|261403039|ref|YP_003247263.1| - 0.0026 17.7 1.2 0.014 15.3 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4957) DUF758 PF05527.11 gi|261403039|ref|YP_003247263.1| - 0.066 13.2 0.0 0.21 11.6 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF758) zf-C4_Topoisom PF01396.19 gi|261403040|ref|YP_003247264.1| - 7e-15 54.5 3.8 1.4e-14 53.6 3.8 1.5 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|261403040|ref|YP_003247264.1| - 0.0034 16.7 0.2 0.0069 15.8 0.2 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DUF5377 PF17347.2 gi|261403040|ref|YP_003247264.1| - 0.017 15.5 0.1 0.081 13.3 0.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5377) DNA_ligase_ZBD PF03119.16 gi|261403040|ref|YP_003247264.1| - 0.18 11.9 1.0 0.36 10.9 1.0 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Fer4 PF00037.27 gi|261403041|ref|YP_003247265.1| - 1.4e-12 46.9 18.0 7.1e-07 28.8 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403041|ref|YP_003247265.1| - 5.5e-12 46.1 5.3 1e-05 26.0 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403041|ref|YP_003247265.1| - 1.2e-08 34.9 15.1 1.9e-08 34.3 15.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403041|ref|YP_003247265.1| - 7.4e-08 32.0 14.5 0.00028 20.8 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403041|ref|YP_003247265.1| - 1.6e-07 31.7 7.9 5.6e-05 23.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403041|ref|YP_003247265.1| - 2.3e-07 30.6 17.4 6e-05 22.9 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403041|ref|YP_003247265.1| - 2.9e-07 30.5 28.8 7.8e-05 22.7 18.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain NIL PF09383.10 gi|261403041|ref|YP_003247265.1| - 7.4e-07 28.9 0.0 1.3e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 NIL domain Fer4_9 PF13187.6 gi|261403041|ref|YP_003247265.1| - 8.7e-07 29.0 15.1 2.2e-06 27.7 15.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403041|ref|YP_003247265.1| - 3.6e-06 27.8 12.8 0.0039 18.1 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|261403041|ref|YP_003247265.1| - 8.8e-06 25.8 15.6 0.0045 17.4 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261403041|ref|YP_003247265.1| - 2e-05 25.4 6.0 0.065 14.1 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403041|ref|YP_003247265.1| - 0.00031 21.2 16.1 0.023 15.2 4.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403041|ref|YP_003247265.1| - 0.025 15.5 23.1 0.066 14.2 5.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ALS_ss_C PF10369.9 gi|261403041|ref|YP_003247265.1| - 0.029 14.6 0.1 0.052 13.8 0.1 1.4 1 0 0 1 1 1 0 Small subunit of acetolactate synthase Fer4_18 PF13746.6 gi|261403041|ref|YP_003247265.1| - 0.1 12.8 14.5 1.3 9.2 14.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261403041|ref|YP_003247265.1| - 0.79 10.3 16.3 1.1e+02 3.5 16.3 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|261403041|ref|YP_003247265.1| - 4.9 8.0 15.9 1.9e+03 -0.3 15.9 2.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain HcyBio PF01837.16 gi|261403042|ref|YP_003247266.1| - 4.4e-143 476.3 0.6 5.6e-143 476.0 0.6 1.1 1 0 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation CBS PF00571.28 gi|261403042|ref|YP_003247266.1| - 1.1e-29 102.6 5.1 9.3e-15 54.8 0.0 3.2 3 0 0 3 3 3 2 CBS domain Ribosomal_L9_C PF03948.14 gi|261403042|ref|YP_003247266.1| - 0.049 14.1 1.4 8.3 7.0 0.1 3.2 2 1 0 3 3 3 0 Ribosomal protein L9, C-terminal domain Spt5-NGN PF03439.13 gi|261403043|ref|YP_003247267.1| - 4.2e-23 81.1 0.1 7.4e-23 80.3 0.1 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|261403043|ref|YP_003247267.1| - 7.6e-10 38.4 1.3 1.7e-09 37.3 1.3 1.6 1 0 0 1 1 1 1 KOW motif GBR2_CC PF18455.1 gi|261403043|ref|YP_003247267.1| - 0.011 15.8 0.7 1 9.5 0.3 2.3 2 0 0 2 2 2 0 Gamma-aminobutyric acid type B receptor subunit 2 coiled-coil domain NusG PF02357.19 gi|261403043|ref|YP_003247267.1| - 0.047 14.2 0.4 0.31 11.6 0.1 2.4 1 1 1 2 2 2 0 Transcription termination factor nusG HTH_1 PF00126.27 gi|261403044|ref|YP_003247268.1| - 1.1e-09 38.1 0.0 1.7e-09 37.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|261403044|ref|YP_003247268.1| - 0.011 15.3 0.2 0.026 14.1 0.2 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|261403044|ref|YP_003247268.1| - 0.11 12.4 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|261403044|ref|YP_003247268.1| - 0.11 12.0 0.4 0.26 10.9 0.4 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DAP_epimerase PF01678.19 gi|261403045|ref|YP_003247269.1| - 8.6e-67 222.8 3.2 3.6e-36 124.0 0.1 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 gi|261403045|ref|YP_003247269.1| - 0.00096 18.7 0.0 0.0053 16.3 0.0 2.1 2 1 0 2 2 2 1 Phenazine biosynthesis-like protein PRC PF05239.16 gi|261403046|ref|YP_003247270.1| - 1.9e-14 53.5 0.4 2e-14 53.4 0.4 1.0 1 0 0 1 1 1 1 PRC-barrel domain NTP_transf_3 PF12804.7 gi|261403047|ref|YP_003247271.1| - 3.3e-11 43.8 0.0 4.4e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|261403047|ref|YP_003247271.1| - 3.3e-06 26.9 0.0 3.9e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|261403047|ref|YP_003247271.1| - 0.087 12.6 0.0 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Aconitase PF00330.20 gi|261403048|ref|YP_003247272.1| - 3.5e-97 326.3 6.9 7.5e-95 318.6 6.9 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF3387 PF11867.8 gi|261403049|ref|YP_003247273.1| - 8.6e-74 248.9 25.8 1.9e-73 247.7 25.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3387) SWI2_SNF2 PF18766.1 gi|261403049|ref|YP_003247273.1| - 1.2e-70 237.7 0.8 4.7e-70 235.8 0.0 2.3 2 0 0 2 2 2 1 SWI2/SNF2 ATPase HSDR_N PF04313.14 gi|261403049|ref|YP_003247273.1| - 6.1e-42 143.8 4.8 6.1e-42 143.8 4.8 3.1 4 1 1 5 5 5 1 Type I restriction enzyme R protein N terminus (HSDR_N) ResIII PF04851.15 gi|261403049|ref|YP_003247273.1| - 2.6e-24 86.2 3.9 7.9e-24 84.6 0.2 2.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|261403049|ref|YP_003247273.1| - 0.00024 21.4 0.7 0.0064 16.8 0.0 3.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_22 PF13401.6 gi|261403049|ref|YP_003247273.1| - 0.036 14.3 0.0 0.14 12.4 0.0 2.0 1 0 0 1 1 1 0 AAA domain Nucleolin_bd PF16725.5 gi|261403049|ref|YP_003247273.1| - 0.094 12.4 1.2 0.42 10.3 0.2 2.6 2 0 0 2 2 2 0 Nucleolin binding domain NAT PF04768.13 gi|261403049|ref|YP_003247273.1| - 0.68 9.6 5.0 0.38 10.4 1.0 2.6 2 1 1 3 3 3 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase Ku_PK_bind PF08785.11 gi|261403049|ref|YP_003247273.1| - 4.3 7.5 9.5 0.3 11.2 2.1 3.0 3 1 0 3 3 3 0 Ku C terminal domain like DUF86 PF01934.17 gi|261403050|ref|YP_003247274.1| - 1.2e-08 34.9 0.0 1.2e-08 34.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF86 PF01934.17 gi|261403051|ref|YP_003247275.1| - 5.6e-09 35.9 0.2 6.3e-09 35.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|261403052|ref|YP_003247276.1| - 3.2e-19 68.8 0.1 3.5e-19 68.7 0.1 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|261403052|ref|YP_003247276.1| - 3.8e-17 62.4 0.4 4.4e-17 62.2 0.4 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.6 gi|261403052|ref|YP_003247276.1| - 0.0059 16.8 0.0 0.0063 16.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm PUFD PF16553.5 gi|261403052|ref|YP_003247276.1| - 0.042 14.0 0.0 0.047 13.8 0.0 1.2 1 0 0 1 1 1 0 BCORL-PCGF1-binding domain PIN PF01850.21 gi|261403053|ref|YP_003247277.1| - 1.5e-11 44.9 0.1 3.2e-11 43.8 0.1 1.5 1 1 0 1 1 1 1 PIN domain PIN_5 PF08745.11 gi|261403053|ref|YP_003247277.1| - 0.00034 20.1 0.1 0.37 10.2 0.0 2.1 2 0 0 2 2 2 2 PINc domain ribonuclease PIN_3 PF13470.6 gi|261403053|ref|YP_003247277.1| - 0.0019 19.0 0.0 0.0025 18.5 0.0 1.3 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|261403053|ref|YP_003247277.1| - 0.0023 18.4 1.2 0.0046 17.5 1.2 1.7 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|261403053|ref|YP_003247277.1| - 0.015 15.6 0.1 0.029 14.6 0.1 1.7 1 1 0 1 1 1 0 PIN domain Acid_PPase PF12689.7 gi|261403053|ref|YP_003247277.1| - 0.015 15.1 0.1 0.019 14.8 0.1 1.1 1 0 0 1 1 1 0 Acid Phosphatase PIN_4 PF13638.6 gi|261403053|ref|YP_003247277.1| - 0.036 14.4 0.4 3.2 8.1 0.1 2.2 1 1 0 2 2 2 0 PIN domain LPD14 PF18827.1 gi|261403053|ref|YP_003247277.1| - 0.055 13.7 0.0 0.73 10.1 0.0 2.2 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 14 DUF104 PF01954.16 gi|261403054|ref|YP_003247278.1| - 4.1e-10 39.9 5.6 5.5e-10 39.5 5.6 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF104 Methylase_S PF01420.19 gi|261403055|ref|YP_003247279.1| - 2.3e-40 138.6 21.3 1.8e-28 99.8 6.8 2.1 2 0 0 2 2 2 2 Type I restriction modification DNA specificity domain OspE PF02471.17 gi|261403055|ref|YP_003247279.1| - 0.09 13.0 2.6 0.41 10.9 0.3 2.7 2 0 0 2 2 2 0 Borrelia outer surface protein E N6_Mtase PF02384.16 gi|261403056|ref|YP_003247280.1| - 2e-113 378.8 0.0 2.8e-113 378.3 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase HsdM_N PF12161.8 gi|261403056|ref|YP_003247280.1| - 5e-23 82.2 4.1 9.7e-23 81.3 0.8 2.4 2 0 0 2 2 2 1 HsdM N-terminal domain MTS PF05175.14 gi|261403056|ref|YP_003247280.1| - 8.7e-06 25.4 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|261403056|ref|YP_003247280.1| - 0.00019 21.2 0.4 0.0018 18.0 0.4 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 AviRa PF11599.8 gi|261403056|ref|YP_003247280.1| - 0.062 12.8 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa PrmA PF06325.13 gi|261403056|ref|YP_003247280.1| - 0.073 12.5 0.0 0.17 11.3 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) DUF364 PF04016.12 gi|261403057|ref|YP_003247281.1| - 3e-38 130.7 0.0 5.3e-38 129.9 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|261403057|ref|YP_003247281.1| - 1.8e-13 50.5 0.0 2.8e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation Flavodoxin_5 PF12724.7 gi|261403058|ref|YP_003247282.1| - 2.6e-12 47.2 0.0 3e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_3 PF12641.7 gi|261403058|ref|YP_003247282.1| - 2.8e-12 46.6 1.0 7.3e-11 42.0 0.3 1.9 1 1 1 2 2 2 2 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|261403058|ref|YP_003247282.1| - 0.00087 19.5 0.1 0.008 16.4 0.1 2.3 1 1 0 1 1 1 1 Flavodoxin FBPase_3 PF01950.16 gi|261403059|ref|YP_003247283.1| - 1.8e-182 606.4 0.0 2.1e-182 606.2 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase LysR_substrate PF03466.20 gi|261403060|ref|YP_003247284.1| - 2.1e-39 135.0 0.0 2.7e-39 134.7 0.0 1.1 1 0 0 1 1 1 1 LysR substrate binding domain HTH_1 PF00126.27 gi|261403060|ref|YP_003247284.1| - 1.1e-17 63.7 0.0 3.1e-17 62.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family PBP_like PF12727.7 gi|261403060|ref|YP_003247284.1| - 1.1e-09 37.7 0.0 6.2e-08 32.0 0.0 2.2 1 1 0 1 1 1 1 PBP superfamily domain PBP_like_2 PF12849.7 gi|261403060|ref|YP_003247284.1| - 5.1e-06 26.4 0.0 1.3e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain HTH_5 PF01022.20 gi|261403060|ref|YP_003247284.1| - 0.0015 18.4 0.2 0.0061 16.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|261403060|ref|YP_003247284.1| - 0.0019 17.7 0.1 0.0097 15.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|261403060|ref|YP_003247284.1| - 0.0023 18.0 0.0 0.0092 16.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|261403060|ref|YP_003247284.1| - 0.01 15.4 0.9 0.045 13.4 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|261403060|ref|YP_003247284.1| - 0.012 15.6 0.6 0.22 11.5 0.0 2.9 3 0 0 3 3 3 0 HTH domain HTH_40 PF14493.6 gi|261403060|ref|YP_003247284.1| - 0.023 15.2 0.1 0.057 13.9 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|261403060|ref|YP_003247284.1| - 0.097 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|261403060|ref|YP_003247284.1| - 0.1 12.5 0.2 2.2 8.2 0.0 2.7 3 0 0 3 3 3 0 MarR family MarR PF01047.22 gi|261403060|ref|YP_003247284.1| - 0.11 12.5 0.1 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 MarR family PPDK_N PF01326.19 gi|261403061|ref|YP_003247285.1| - 2.2e-124 415.0 0.4 4.6e-124 414.0 0.4 1.5 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|261403061|ref|YP_003247285.1| - 5.7e-89 298.1 0.2 1.1e-88 297.1 0.2 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|261403061|ref|YP_003247285.1| - 2.9e-28 97.4 2.0 6.9e-28 96.2 2.0 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|261403061|ref|YP_003247285.1| - 0.0016 17.6 0.1 0.0045 16.1 0.1 1.8 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Epimerase_2 PF02350.19 gi|261403061|ref|YP_003247285.1| - 0.011 14.6 0.2 0.024 13.5 0.2 1.5 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase PEP-utilisers_N PF05524.13 gi|261403061|ref|YP_003247285.1| - 0.022 14.9 1.0 2.7 8.2 0.1 3.3 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Radical_SAM PF04055.21 gi|261403061|ref|YP_003247285.1| - 0.22 11.9 4.4 25 5.2 0.0 4.4 3 1 0 4 4 4 0 Radical SAM superfamily MerR_1 PF13411.6 gi|261403061|ref|YP_003247285.1| - 0.31 11.2 1.8 11 6.2 0.1 3.2 4 0 0 4 4 4 0 MerR HTH family regulatory protein Ribosomal_L16 PF00252.18 gi|261403062|ref|YP_003247286.1| - 1.8e-36 125.0 0.3 2.1e-36 124.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Glycos_transf_2 PF00535.26 gi|261403063|ref|YP_003247287.1| - 7.1e-28 97.5 0.3 9.4e-28 97.1 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|261403063|ref|YP_003247287.1| - 2.9e-06 26.9 0.4 3.3e-06 26.8 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|261403063|ref|YP_003247287.1| - 4.1e-05 23.6 0.0 5.9e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|261403063|ref|YP_003247287.1| - 4.9e-05 23.8 0.1 9.4e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transferase PF00483.23 gi|261403063|ref|YP_003247287.1| - 0.0012 18.4 0.1 0.0021 17.7 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase CLN5 PF15014.6 gi|261403063|ref|YP_003247287.1| - 0.016 14.9 0.3 0.021 14.5 0.3 1.3 1 0 0 1 1 1 0 Ceroid-lipofuscinosis neuronal protein 5 ABC2_membrane_3 PF12698.7 gi|261403063|ref|YP_003247287.1| - 0.019 14.1 0.6 0.028 13.6 0.6 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Usher_TcfC PF17271.2 gi|261403064|ref|YP_003247288.1| - 0.044 12.6 5.3 0.056 12.2 5.3 1.1 1 0 0 1 1 1 0 TcfC Usher-like barrel domain Podoplanin PF05808.11 gi|261403064|ref|YP_003247288.1| - 0.049 13.7 7.1 0.073 13.2 7.1 1.3 1 0 0 1 1 1 0 Podoplanin DUF5305 PF17231.2 gi|261403064|ref|YP_003247288.1| - 0.098 12.1 19.4 0.036 13.5 15.8 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5305) DUF948 PF06103.11 gi|261403065|ref|YP_003247289.1| - 0.0026 18.0 0.3 0.0028 17.9 0.3 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) Ninjurin PF04923.12 gi|261403065|ref|YP_003247289.1| - 0.0097 15.8 0.5 0.0099 15.8 0.5 1.0 1 0 0 1 1 1 1 Ninjurin LPP PF04728.13 gi|261403065|ref|YP_003247289.1| - 0.052 13.9 0.0 0.068 13.6 0.0 1.1 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DUF4446 PF14584.6 gi|261403065|ref|YP_003247289.1| - 0.091 12.7 1.4 0.13 12.3 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF5053 PF16476.5 gi|261403065|ref|YP_003247289.1| - 0.097 12.3 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5053) DUF4191 PF13829.6 gi|261403065|ref|YP_003247289.1| - 0.36 10.1 5.2 0.14 11.5 3.0 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) CbiA PF01656.23 gi|261403066|ref|YP_003247290.1| - 2.9e-29 101.7 0.8 4.5e-29 101.1 0.8 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|261403066|ref|YP_003247290.1| - 3.4e-27 95.5 6.7 2.9e-26 92.4 6.7 2.3 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|261403066|ref|YP_003247290.1| - 3.6e-22 79.1 1.0 5.9e-22 78.4 1.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|261403066|ref|YP_003247290.1| - 3.6e-13 49.6 3.2 8.8e-07 28.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|261403066|ref|YP_003247290.1| - 3.5e-11 43.0 0.0 1.1e-10 41.4 0.0 1.7 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|261403066|ref|YP_003247290.1| - 7.9e-11 41.7 0.8 6.7e-10 38.7 0.6 2.1 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|261403066|ref|YP_003247290.1| - 1.5e-09 37.5 2.9 2e-07 30.5 0.4 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase AAA_26 PF13500.6 gi|261403066|ref|YP_003247290.1| - 1.4e-07 31.6 5.5 2.3e-06 27.6 0.7 2.3 2 0 0 2 2 2 2 AAA domain VirC1 PF07015.11 gi|261403066|ref|YP_003247290.1| - 0.0011 18.3 0.7 0.0022 17.3 0.7 1.4 1 0 0 1 1 1 1 VirC1 protein APS_kinase PF01583.20 gi|261403066|ref|YP_003247290.1| - 0.0037 17.2 0.0 0.0059 16.5 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase SRP54 PF00448.22 gi|261403066|ref|YP_003247290.1| - 0.0047 16.6 1.8 0.015 15.0 1.8 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|261403066|ref|YP_003247290.1| - 0.0077 16.0 1.5 0.025 14.3 0.7 2.0 1 1 1 2 2 2 1 AAA domain CLP1_P PF16575.5 gi|261403066|ref|YP_003247290.1| - 0.0078 16.0 0.3 0.017 14.9 0.0 1.7 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop PhoH PF02562.16 gi|261403066|ref|YP_003247290.1| - 0.0092 15.4 1.7 0.39 10.1 1.6 2.2 2 0 0 2 2 2 1 PhoH-like protein MeaB PF03308.16 gi|261403066|ref|YP_003247290.1| - 0.037 13.0 0.3 0.079 11.9 0.3 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|261403066|ref|YP_003247290.1| - 0.039 13.5 3.3 0.096 12.2 3.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|261403066|ref|YP_003247290.1| - 0.062 13.5 0.0 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|261403066|ref|YP_003247290.1| - 0.13 12.0 0.1 0.26 11.0 0.1 1.5 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|261403066|ref|YP_003247290.1| - 0.17 11.9 0.1 1.2 9.1 0.2 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DnaB_C PF03796.15 gi|261403066|ref|YP_003247290.1| - 0.27 10.5 0.8 1.4 8.2 0.8 2.1 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain NB-ARC PF00931.22 gi|261403066|ref|YP_003247290.1| - 0.34 10.1 0.9 3.8 6.6 0.4 2.2 2 0 0 2 2 2 0 NB-ARC domain DUF2121 PF09894.9 gi|261403067|ref|YP_003247291.1| - 4e-69 232.1 6.2 6.6e-69 231.4 6.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2121) DRTGG PF07085.12 gi|261403067|ref|YP_003247291.1| - 0.11 12.3 0.0 0.76 9.6 0.0 2.4 2 0 0 2 2 2 0 DRTGG domain NikR_C PF08753.11 gi|261403068|ref|YP_003247292.1| - 2.9e-33 113.9 5.6 2.9e-33 113.9 5.6 1.4 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|261403068|ref|YP_003247292.1| - 1.1e-12 47.4 1.2 1.1e-12 47.4 1.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|261403068|ref|YP_003247292.1| - 0.0033 17.5 0.1 0.0086 16.2 0.0 1.7 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|261403068|ref|YP_003247292.1| - 0.0064 16.7 0.1 0.0086 16.3 0.1 1.4 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RRM_3 PF08777.11 gi|261403068|ref|YP_003247292.1| - 0.033 14.2 0.1 0.043 13.9 0.1 1.3 1 1 0 1 1 1 0 RNA binding motif ChuX_HutX PF06228.13 gi|261403068|ref|YP_003247292.1| - 0.077 12.8 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Haem utilisation ChuX/HutX RHH_5 PF07878.11 gi|261403068|ref|YP_003247292.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Radical_SAM PF04055.21 gi|261403069|ref|YP_003247293.1| - 6.6e-06 26.6 1.4 1.3e-05 25.6 0.1 2.1 3 0 0 3 3 3 1 Radical SAM superfamily DNA_pol_lambd_f PF10391.9 gi|261403069|ref|YP_003247293.1| - 0.11 12.4 0.0 12 5.8 0.0 2.8 2 1 0 2 2 2 0 Fingers domain of DNA polymerase lambda NIR_SIR PF01077.22 gi|261403070|ref|YP_003247294.1| - 2.8e-24 85.4 0.3 4.5e-24 84.7 0.3 1.3 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|261403070|ref|YP_003247294.1| - 5.8e-16 58.1 0.0 1.8e-15 56.5 0.0 1.8 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|261403070|ref|YP_003247294.1| - 6.4e-05 22.6 3.4 6.4e-05 22.6 3.4 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403070|ref|YP_003247294.1| - 0.0024 17.8 3.4 0.0024 17.8 3.4 3.5 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403070|ref|YP_003247294.1| - 0.0025 17.9 9.3 0.0025 17.9 9.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403070|ref|YP_003247294.1| - 0.017 15.3 10.3 0.017 15.3 10.3 2.3 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403070|ref|YP_003247294.1| - 0.022 14.8 2.0 0.022 14.8 2.0 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403070|ref|YP_003247294.1| - 0.034 14.7 8.5 0.034 14.7 8.5 2.6 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403070|ref|YP_003247294.1| - 0.06 13.9 3.5 0.06 13.9 3.5 3.8 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403070|ref|YP_003247294.1| - 0.37 11.3 10.1 9.6 6.7 0.0 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261403070|ref|YP_003247294.1| - 1.2 10.0 15.3 2.4 9.1 0.6 3.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261403070|ref|YP_003247294.1| - 6.6 7.6 10.6 14 6.6 1.8 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain ABC_tran PF00005.27 gi|261403072|ref|YP_003247296.1| - 1.9e-35 122.3 0.1 5.4e-35 120.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|261403072|ref|YP_003247296.1| - 9.6e-09 35.5 2.3 0.00094 19.1 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|261403072|ref|YP_003247296.1| - 1.4e-07 31.2 0.9 2.5e-06 27.1 0.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|261403072|ref|YP_003247296.1| - 4e-07 29.7 0.1 1.6e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|261403072|ref|YP_003247296.1| - 0.00038 20.4 0.1 0.0016 18.4 0.0 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|261403072|ref|YP_003247296.1| - 0.00053 20.6 1.5 0.0013 19.3 1.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|261403072|ref|YP_003247296.1| - 0.00057 20.3 0.0 0.0012 19.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|261403072|ref|YP_003247296.1| - 0.0022 18.3 0.1 0.0055 17.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|261403072|ref|YP_003247296.1| - 0.0084 15.5 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|261403072|ref|YP_003247296.1| - 0.013 15.7 0.1 0.21 11.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|261403072|ref|YP_003247296.1| - 0.051 13.3 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|261403072|ref|YP_003247296.1| - 0.056 12.7 0.0 0.071 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|261403072|ref|YP_003247296.1| - 0.058 13.8 0.8 0.42 11.0 0.8 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|261403072|ref|YP_003247296.1| - 0.11 12.3 0.2 0.23 11.2 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein PDDEXK_3 PF13366.6 gi|261403072|ref|YP_003247296.1| - 0.21 11.9 2.2 2 8.8 0.1 2.3 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily DUF3987 PF13148.6 gi|261403072|ref|YP_003247296.1| - 0.24 10.4 0.0 0.37 9.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) LPG_synthase_TM PF03706.13 gi|261403073|ref|YP_003247297.1| - 2e-52 178.6 24.6 2.8e-52 178.1 24.6 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region RTC PF01137.21 gi|261403074|ref|YP_003247298.1| - 5e-82 274.4 0.0 5.7e-82 274.2 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|261403074|ref|YP_003247298.1| - 5.9e-12 46.0 0.0 1e-11 45.3 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Methyltr_RsmB-F PF01189.17 gi|261403075|ref|YP_003247299.1| - 1e-70 237.5 0.1 1.2e-70 237.2 0.1 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|261403075|ref|YP_003247299.1| - 3.7e-08 33.7 0.0 4.7e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|261403075|ref|YP_003247299.1| - 7.3e-08 32.3 0.3 9.7e-08 31.9 0.3 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|261403075|ref|YP_003247299.1| - 6.6e-06 25.8 0.1 9.2e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|261403075|ref|YP_003247299.1| - 4.5e-05 23.0 0.7 0.00042 19.8 0.7 2.1 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.6 gi|261403075|ref|YP_003247299.1| - 0.00017 22.2 0.0 0.00049 20.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|261403075|ref|YP_003247299.1| - 0.00054 19.7 0.1 0.0015 18.3 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical protein 95 DUF2431 PF10354.9 gi|261403075|ref|YP_003247299.1| - 0.0006 20.1 0.0 0.00087 19.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2431) Methyltr_RsmF_N PF17125.5 gi|261403075|ref|YP_003247299.1| - 0.00086 19.8 0.0 0.0022 18.4 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF PCMT PF01135.19 gi|261403075|ref|YP_003247299.1| - 0.0016 18.2 0.0 0.0033 17.2 0.0 1.6 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DNA_methylase PF00145.17 gi|261403075|ref|YP_003247299.1| - 0.0017 17.8 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase N6_Mtase PF02384.16 gi|261403075|ref|YP_003247299.1| - 0.0021 17.4 0.2 0.0032 16.8 0.2 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_3 PF01596.17 gi|261403075|ref|YP_003247299.1| - 0.0038 16.4 0.1 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 O-methyltransferase Met_10 PF02475.16 gi|261403075|ref|YP_003247299.1| - 0.0039 17.0 0.3 0.0098 15.7 0.1 1.7 2 0 0 2 2 2 1 Met-10+ like-protein Fibrillarin PF01269.17 gi|261403075|ref|YP_003247299.1| - 0.005 16.0 0.0 0.0095 15.1 0.0 1.4 1 0 0 1 1 1 1 Fibrillarin RrnaAD PF00398.20 gi|261403075|ref|YP_003247299.1| - 0.015 14.4 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|261403075|ref|YP_003247299.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Exosortase_EpsH PF09721.10 gi|261403076|ref|YP_003247300.1| - 1.6e-17 63.9 3.8 1.9e-17 63.7 3.8 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) AIRS PF00586.24 gi|261403077|ref|YP_003247301.1| - 1.4e-21 77.0 0.0 3.2e-21 75.8 0.0 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Topo-VIb_trans PF09239.11 gi|261403078|ref|YP_003247302.1| - 1.5e-56 190.7 0.0 5e-56 188.9 0.0 2.0 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|261403078|ref|YP_003247302.1| - 9.4e-13 48.7 0.1 2.5e-12 47.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|261403078|ref|YP_003247302.1| - 5.8e-09 35.9 0.0 1.6e-08 34.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF365 PF04033.12 gi|261403078|ref|YP_003247302.1| - 0.017 15.4 12.1 0.2 12.0 0.6 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF365) Med29 PF11568.8 gi|261403078|ref|YP_003247302.1| - 0.055 13.7 0.2 0.12 12.6 0.2 1.5 1 0 0 1 1 1 0 Mediator complex subunit 29 Costars PF14705.6 gi|261403078|ref|YP_003247302.1| - 0.075 13.2 0.4 0.35 11.1 0.1 2.4 2 0 0 2 2 2 0 Costars NUC130_3NT PF08158.12 gi|261403078|ref|YP_003247302.1| - 0.11 12.8 0.0 0.72 10.2 0.0 2.5 2 0 0 2 2 1 0 NUC130/3NT domain DUF445 PF04286.12 gi|261403078|ref|YP_003247302.1| - 0.13 12.1 15.1 0.4 10.4 10.7 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF445) Rx_N PF18052.1 gi|261403078|ref|YP_003247302.1| - 0.16 12.3 0.9 0.72 10.2 0.4 2.2 1 1 0 1 1 1 0 Rx N-terminal domain Cupin_5 PF06172.11 gi|261403078|ref|YP_003247302.1| - 0.18 12.0 0.0 0.98 9.6 0.0 2.0 2 0 0 2 2 2 0 Cupin superfamily (DUF985) FGAR-AT_linker PF18072.1 gi|261403078|ref|YP_003247302.1| - 0.59 10.7 4.3 7.4 7.2 0.1 3.9 4 1 1 5 5 5 0 Formylglycinamide ribonucleotide amidotransferase linker domain YtxH PF12732.7 gi|261403078|ref|YP_003247302.1| - 1.1 9.9 7.7 0.42 11.2 1.0 3.4 3 1 0 3 3 3 0 YtxH-like protein DED PF01335.21 gi|261403078|ref|YP_003247302.1| - 4.5 7.7 8.9 7.7 6.9 2.8 3.2 1 1 2 3 3 3 0 Death effector domain DUSP PF06337.12 gi|261403078|ref|YP_003247302.1| - 8.1 7.1 5.9 31 5.3 5.9 1.9 1 1 0 1 1 1 0 DUSP domain S_layer_C PF05124.12 gi|261403079|ref|YP_003247303.1| - 1.9e-32 113.1 13.5 1.9e-21 77.1 0.0 3.1 2 1 1 3 3 3 2 S-layer like family, C-terminal region DUF2996 PF11210.8 gi|261403079|ref|YP_003247303.1| - 0.002 18.5 0.1 0.004 17.6 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2996) SH3_2 PF07653.17 gi|261403079|ref|YP_003247303.1| - 0.1 12.3 0.9 1.4 8.7 0.1 2.8 2 0 0 2 2 2 0 Variant SH3 domain Aminotran_1_2 PF00155.21 gi|261403080|ref|YP_003247304.1| - 4.8e-62 210.2 0.0 5.5e-62 210.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|261403080|ref|YP_003247304.1| - 7.6e-12 44.9 0.0 5.2e-10 38.8 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V Alliinase_C PF04864.13 gi|261403080|ref|YP_003247304.1| - 2.5e-10 39.8 0.1 5.8e-09 35.3 0.1 2.0 2 0 0 2 2 2 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|261403080|ref|YP_003247304.1| - 1.5e-08 33.6 0.2 2.7e-08 32.8 0.1 1.4 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|261403080|ref|YP_003247304.1| - 0.0003 20.2 0.1 0.00043 19.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM_C PF16199.5 gi|261403081|ref|YP_003247305.1| - 8.8e-27 93.0 0.4 2.5e-26 91.5 0.4 1.8 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|261403081|ref|YP_003247305.1| - 2.9e-22 79.8 2.7 4.2e-22 79.3 0.3 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|261403081|ref|YP_003247305.1| - 2.3e-07 31.1 0.0 7.6e-07 29.4 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|261403081|ref|YP_003247305.1| - 5.3e-06 26.4 0.1 1.2e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|261403081|ref|YP_003247305.1| - 0.0011 19.3 0.7 0.0026 18.2 0.7 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HMGL-like PF00682.19 gi|261403082|ref|YP_003247306.1| - 2.2e-97 325.8 0.3 2.2e-97 325.8 0.3 2.2 2 1 1 3 3 3 1 HMGL-like LeuA_dimer PF08502.10 gi|261403082|ref|YP_003247306.1| - 1.5e-36 125.2 5.7 3.2e-36 124.1 5.7 1.6 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.24 gi|261403082|ref|YP_003247306.1| - 0.0092 15.4 0.1 0.036 13.5 0.0 2.0 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel EspA PF03433.13 gi|261403082|ref|YP_003247306.1| - 0.084 12.7 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 EspA-like secreted protein CdhC PF03598.15 gi|261403083|ref|YP_003247307.1| - 1.8e-63 213.1 0.5 3.8e-63 212.0 0.5 1.6 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit CODH_A_N PF18537.1 gi|261403083|ref|YP_003247307.1| - 2.5e-19 69.1 1.1 5.8e-19 67.9 0.3 2.2 2 0 0 2 2 2 1 Carbon monoxide dehydrogenase subunit alpha N-terminal domain RasGAP PF00616.19 gi|261403083|ref|YP_003247307.1| - 0.0018 18.0 0.5 0.006 16.3 0.5 1.8 1 1 0 1 1 1 1 GTPase-activator protein for Ras-like GTPase Microtub_bind PF13931.6 gi|261403083|ref|YP_003247307.1| - 0.52 10.7 3.7 1.5 9.2 3.7 1.7 1 0 0 1 1 1 0 Kinesin-associated microtubule-binding HTH_24 PF13412.6 gi|261403084|ref|YP_003247308.1| - 2.1e-16 59.2 1.2 3.6e-16 58.4 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|261403084|ref|YP_003247308.1| - 5.9e-16 58.0 0.1 9e-16 57.4 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|261403084|ref|YP_003247308.1| - 5.9e-15 55.0 0.0 8e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|261403084|ref|YP_003247308.1| - 1.8e-07 31.0 0.1 1.6e-06 27.9 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|261403084|ref|YP_003247308.1| - 4.1e-07 30.0 0.0 2.3e-06 27.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|261403084|ref|YP_003247308.1| - 9.3e-07 28.6 0.0 4.3e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|261403084|ref|YP_003247308.1| - 1.1e-05 25.1 0.0 2.3e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|261403084|ref|YP_003247308.1| - 2.1e-05 23.9 0.1 4.5e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|261403084|ref|YP_003247308.1| - 6.2e-05 22.8 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|261403084|ref|YP_003247308.1| - 7.4e-05 22.6 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|261403084|ref|YP_003247308.1| - 7.9e-05 22.3 0.3 0.00021 20.9 0.1 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|261403084|ref|YP_003247308.1| - 9.7e-05 22.0 0.1 0.00028 20.5 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 TrmB PF01978.19 gi|261403084|ref|YP_003247308.1| - 0.00032 20.5 0.0 0.0059 16.5 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_50 PF18024.1 gi|261403084|ref|YP_003247308.1| - 0.00056 19.5 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|261403084|ref|YP_003247308.1| - 0.00081 19.5 0.0 0.31 11.3 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|261403084|ref|YP_003247308.1| - 0.00091 18.9 0.1 0.0016 18.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|261403084|ref|YP_003247308.1| - 0.001 18.8 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|261403084|ref|YP_003247308.1| - 0.0013 18.8 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|261403084|ref|YP_003247308.1| - 0.0015 18.7 0.0 0.0025 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GerE PF00196.19 gi|261403084|ref|YP_003247308.1| - 0.0025 17.3 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Mga PF05043.13 gi|261403084|ref|YP_003247308.1| - 0.0045 17.5 0.0 0.0084 16.7 0.0 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|261403084|ref|YP_003247308.1| - 0.0056 16.4 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|261403084|ref|YP_003247308.1| - 0.0089 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|261403084|ref|YP_003247308.1| - 0.009 16.5 0.1 0.017 15.6 0.0 1.5 2 0 0 2 2 1 1 Winged helix DNA-binding domain MtrG PF04210.13 gi|261403084|ref|YP_003247308.1| - 0.019 14.8 0.3 0.82 9.6 0.1 2.3 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G HrcA_DNA-bdg PF03444.15 gi|261403084|ref|YP_003247308.1| - 0.032 13.9 0.1 0.091 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_36 PF13730.6 gi|261403084|ref|YP_003247308.1| - 0.033 14.2 0.1 0.059 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2089 PF09862.9 gi|261403084|ref|YP_003247308.1| - 0.089 12.8 0.1 0.12 12.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_10 PF04967.12 gi|261403084|ref|YP_003247308.1| - 0.099 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.21 gi|261403084|ref|YP_003247308.1| - 0.11 12.1 0.0 0.33 10.6 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family RPA_C PF08784.11 gi|261403084|ref|YP_003247308.1| - 0.13 13.0 0.0 0.19 12.4 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal PaaX PF07848.12 gi|261403084|ref|YP_003247308.1| - 0.13 12.5 0.2 0.32 11.3 0.1 1.6 2 0 0 2 2 1 0 PaaX-like protein DUF2250 PF10007.9 gi|261403084|ref|YP_003247308.1| - 0.15 12.2 0.1 0.42 10.8 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HxlR PF01638.17 gi|261403084|ref|YP_003247308.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix GYD PF08734.11 gi|261403084|ref|YP_003247308.1| - 0.17 11.8 0.0 0.43 10.6 0.0 1.7 2 0 0 2 2 2 0 GYD domain V4R PF02830.18 gi|261403085|ref|YP_003247309.1| - 7.7e-18 64.3 1.8 1.4e-17 63.4 1.8 1.5 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|261403085|ref|YP_003247309.1| - 5.3e-07 29.6 0.0 7.2e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2507) ATC_hydrolase PF14196.6 gi|261403085|ref|YP_003247309.1| - 0.004 17.9 0.8 0.0074 17.1 0.8 1.4 1 1 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase ATLF PF07737.11 gi|261403085|ref|YP_003247309.1| - 0.04 13.2 0.2 0.062 12.6 0.2 1.2 1 0 0 1 1 1 0 Anthrax toxin lethal factor, N- and C-terminal domain SL4P PF17618.2 gi|261403085|ref|YP_003247309.1| - 0.33 11.0 0.0 0.33 11.0 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized Strongylid L4 protein HhH-GPD PF00730.25 gi|261403086|ref|YP_003247310.1| - 2.7e-19 69.6 0.1 3.6e-19 69.2 0.1 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|261403086|ref|YP_003247310.1| - 1.6e-06 27.7 0.0 3.4e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|261403086|ref|YP_003247310.1| - 5e-05 23.8 1.8 0.00013 22.5 0.1 2.3 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|261403086|ref|YP_003247310.1| - 0.01 15.9 0.0 0.024 14.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1572 PF07609.11 gi|261403086|ref|YP_003247310.1| - 0.012 15.4 0.2 0.087 12.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1572) rRNA_proc-arch PF13234.6 gi|261403086|ref|YP_003247310.1| - 0.027 14.4 1.8 0.027 14.4 1.8 1.9 2 0 0 2 2 2 0 rRNA-processing arch domain FF PF01846.19 gi|261403086|ref|YP_003247310.1| - 0.042 14.0 0.5 7.7 6.8 0.0 2.7 2 0 0 2 2 2 0 FF domain HHH_8 PF14716.6 gi|261403086|ref|YP_003247310.1| - 0.056 13.8 0.1 0.17 12.2 0.0 1.9 2 0 0 2 2 1 0 Helix-hairpin-helix domain Ribosomal_S13 PF00416.22 gi|261403086|ref|YP_003247310.1| - 0.07 13.5 0.7 0.27 11.6 0.0 2.1 1 1 1 2 2 2 0 Ribosomal protein S13/S18 YcxB PF14317.6 gi|261403086|ref|YP_003247310.1| - 0.074 12.8 0.1 21 4.9 0.0 2.9 3 0 0 3 3 3 0 YcxB-like protein Linker_histone PF00538.19 gi|261403086|ref|YP_003247310.1| - 0.52 10.7 2.5 0.71 10.3 0.1 2.4 3 0 0 3 3 3 0 linker histone H1 and H5 family Hfq PF17209.3 gi|261403087|ref|YP_003247311.1| - 5e-07 29.3 0.1 6e-07 29.0 0.1 1.1 1 0 0 1 1 1 1 Hfq protein DUF5608 PF18356.1 gi|261403087|ref|YP_003247311.1| - 0.018 15.1 0.2 0.024 14.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5608) S1 PF00575.23 gi|261403087|ref|YP_003247311.1| - 0.034 14.5 0.2 0.058 13.7 0.0 1.4 2 0 0 2 2 2 0 S1 RNA binding domain Ehbp PF10622.9 gi|261403088|ref|YP_003247312.1| - 1.4e-36 124.3 0.5 2.8e-36 123.4 0.5 1.4 1 1 0 1 1 1 1 Energy-converting hydrogenase B subunit P (EhbP) DUF226 PF02890.14 gi|261403088|ref|YP_003247312.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Borrelia family of unknown function DUF226 HAD_2 PF13419.6 gi|261403089|ref|YP_003247313.1| - 4.5e-32 111.6 0.2 4.5e-32 111.6 0.2 1.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|261403089|ref|YP_003247313.1| - 1.3e-15 58.3 0.0 6.2e-15 56.1 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|261403089|ref|YP_003247313.1| - 3.9e-12 46.1 0.0 6.3e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|261403089|ref|YP_003247313.1| - 9.2e-06 26.2 0.0 1.4e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|261403089|ref|YP_003247313.1| - 0.025 14.7 0.0 1.6 8.9 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase 5_nucleotid PF05761.14 gi|261403089|ref|YP_003247313.1| - 0.049 12.5 0.3 0.11 11.4 0.2 1.6 2 0 0 2 2 2 0 5' nucleotidase family CobS PF02654.15 gi|261403090|ref|YP_003247314.1| - 4.4e-40 138.1 10.9 5.1e-40 137.9 10.9 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase PRA1 PF03208.19 gi|261403090|ref|YP_003247314.1| - 5.6 6.6 13.7 1.5 8.5 2.5 2.5 2 1 0 2 2 2 0 PRA1 family protein Peripla_BP_2 PF01497.18 gi|261403091|ref|YP_003247315.1| - 4.3e-26 91.9 0.0 6.3e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Methyltransf_2 PF00891.18 gi|261403092|ref|YP_003247316.1| - 3.7e-11 42.7 0.0 6.1e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase domain Dimerisation2 PF16864.5 gi|261403092|ref|YP_003247316.1| - 7.1e-11 42.0 0.0 1.4e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Dimerisation domain MerR_1 PF13411.6 gi|261403092|ref|YP_003247316.1| - 0.00061 19.8 0.8 0.14 12.3 0.0 2.9 2 0 0 2 2 2 1 MerR HTH family regulatory protein Dimerisation PF08100.11 gi|261403092|ref|YP_003247316.1| - 0.0018 18.2 0.1 0.0055 16.7 0.1 1.8 1 0 0 1 1 1 1 Dimerisation domain HTH_20 PF12840.7 gi|261403092|ref|YP_003247316.1| - 0.004 17.2 0.0 0.0067 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Methyltransf_31 PF13847.6 gi|261403092|ref|YP_003247316.1| - 0.0054 16.5 1.8 0.0062 16.3 0.1 2.0 2 1 0 2 2 2 1 Methyltransferase domain B-block_TFIIIC PF04182.12 gi|261403092|ref|YP_003247316.1| - 0.012 15.7 0.1 0.061 13.5 0.1 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Cnd1 PF12717.7 gi|261403092|ref|YP_003247316.1| - 0.041 13.9 0.2 0.1 12.6 0.2 1.7 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 Methyltransf_12 PF08242.12 gi|261403092|ref|YP_003247316.1| - 0.045 14.5 0.1 0.17 12.6 0.1 2.1 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|261403092|ref|YP_003247316.1| - 0.048 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GidB PF02527.15 gi|261403092|ref|YP_003247316.1| - 0.049 13.0 0.0 0.13 11.6 0.0 1.7 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_25 PF13649.6 gi|261403092|ref|YP_003247316.1| - 0.11 13.2 0.0 0.25 12.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403092|ref|YP_003247316.1| - 0.13 12.0 0.0 0.32 10.8 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain FecCD PF01032.18 gi|261403093|ref|YP_003247317.1| - 6.3e-99 330.9 37.0 7.5e-99 330.7 37.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|261403093|ref|YP_003247317.1| - 2.7e-07 30.3 19.5 5.1e-07 29.5 19.5 1.5 1 0 0 1 1 1 1 ABC 3 transport family FtsJ PF01728.19 gi|261403094|ref|YP_003247318.1| - 1.7e-56 191.1 0.0 2.1e-56 190.9 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|261403094|ref|YP_003247318.1| - 5.8e-07 29.4 0.4 1.1e-05 25.2 0.4 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403094|ref|YP_003247318.1| - 0.00035 20.5 0.0 0.00088 19.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403094|ref|YP_003247318.1| - 0.00035 21.2 0.2 0.0056 17.4 0.1 2.6 1 1 1 2 2 2 1 Methyltransferase domain MS_channel PF00924.18 gi|261403095|ref|YP_003247319.1| - 3e-49 167.4 3.3 4.5e-49 166.8 3.3 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|261403095|ref|YP_003247319.1| - 0.0012 18.8 4.3 0.0012 18.8 4.3 2.7 2 1 1 3 3 3 1 Conserved TM helix GtrA PF04138.14 gi|261403095|ref|YP_003247319.1| - 0.034 14.4 3.2 0.056 13.7 3.2 1.3 1 0 0 1 1 1 0 GtrA-like protein ABC2_membrane_5 PF13346.6 gi|261403095|ref|YP_003247319.1| - 0.039 13.5 8.3 0.054 13.0 8.3 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein PTS_EIIC PF02378.18 gi|261403095|ref|YP_003247319.1| - 0.12 11.4 9.4 0.17 10.8 9.4 1.2 1 0 0 1 1 1 0 Phosphotransferase system, EIIC CPP1-like PF11833.8 gi|261403095|ref|YP_003247319.1| - 0.37 10.4 6.2 0.082 12.6 1.9 2.0 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like SPC12 PF06645.13 gi|261403095|ref|YP_003247319.1| - 0.85 9.7 10.4 1.6 8.8 0.3 2.9 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF2839 PF10999.8 gi|261403095|ref|YP_003247319.1| - 2.2 8.7 5.0 2.1 8.8 1.9 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF2839) FtsX PF02687.21 gi|261403095|ref|YP_003247319.1| - 2.6 8.6 14.0 0.88 10.1 7.3 2.3 1 1 1 2 2 2 0 FtsX-like permease family Aminotran_1_2 PF00155.21 gi|261403096|ref|YP_003247320.1| - 1.6e-43 149.3 0.0 2e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 gi|261403097|ref|YP_003247321.1| - 2e-23 83.6 2.3 2e-23 83.6 2.3 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|261403097|ref|YP_003247321.1| - 2e-21 75.9 0.2 5.6e-21 74.4 0.2 1.8 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|261403097|ref|YP_003247321.1| - 0.0057 16.6 1.5 0.019 15.0 1.5 2.0 1 0 0 1 1 1 1 TRAM domain UPF0180 PF03698.13 gi|261403097|ref|YP_003247321.1| - 0.036 14.2 0.6 0.19 11.9 0.1 2.5 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) TRAM_2 PF18693.1 gi|261403097|ref|YP_003247321.1| - 0.05 13.8 0.8 0.17 12.0 0.2 2.4 2 1 0 2 2 2 0 TRAM domain DUF3567 PF12091.8 gi|261403097|ref|YP_003247321.1| - 0.27 11.4 2.2 18 5.6 0.0 4.2 4 1 1 5 5 5 0 Protein of unknown function (DUF3567) DUF371 PF04027.13 gi|261403098|ref|YP_003247322.1| - 2.8e-55 185.9 2.6 3.1e-55 185.8 2.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Phytoreo_Pns PF05451.11 gi|261403098|ref|YP_003247322.1| - 0.041 13.0 0.3 0.08 12.1 0.2 1.5 1 1 1 2 2 2 0 Phytoreovirus nonstructural protein Pns10/11 LsmAD PF06741.13 gi|261403098|ref|YP_003247322.1| - 0.045 14.3 0.4 0.46 11.1 0.1 2.3 3 0 0 3 3 3 0 LsmAD domain Intein_splicing PF14890.6 gi|261403098|ref|YP_003247322.1| - 0.15 12.0 1.6 0.21 11.5 1.6 1.4 1 1 0 1 1 1 0 Intein splicing domain ETRAMP PF09716.10 gi|261403098|ref|YP_003247322.1| - 0.24 11.5 5.5 1.8 8.7 1.1 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Semialdhyde_dhC PF02774.18 gi|261403099|ref|YP_003247323.1| - 1.9e-45 155.2 0.0 3.4e-45 154.4 0.0 1.4 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|261403099|ref|YP_003247323.1| - 1e-38 132.5 0.0 2e-38 131.5 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|261403099|ref|YP_003247323.1| - 0.00037 21.2 0.0 0.00092 19.9 0.0 1.7 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_C PF02800.20 gi|261403099|ref|YP_003247323.1| - 0.00077 19.1 0.2 0.14 11.8 0.0 2.4 2 0 0 2 2 2 2 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|261403099|ref|YP_003247323.1| - 0.0011 19.1 0.0 0.0025 18.0 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|261403099|ref|YP_003247323.1| - 0.012 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|261403099|ref|YP_003247323.1| - 0.063 13.2 0.0 0.15 11.9 0.0 1.7 1 1 0 1 1 1 0 NAD(P)H-binding RuBisCO_large PF00016.20 gi|261403100|ref|YP_003247324.1| - 4.8e-104 347.8 0.6 5.9e-104 347.4 0.6 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|261403100|ref|YP_003247324.1| - 1.5e-37 128.4 0.0 1.4e-36 125.3 0.0 2.1 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain HTH_5 PF01022.20 gi|261403101|ref|YP_003247325.1| - 3.5e-13 49.2 0.1 5.8e-12 45.3 0.1 2.7 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|261403101|ref|YP_003247325.1| - 7.6e-10 38.5 1.9 3.6e-09 36.4 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|261403101|ref|YP_003247325.1| - 1.6e-07 31.1 0.0 4.5e-07 29.7 0.0 1.8 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|261403101|ref|YP_003247325.1| - 2.9e-07 29.9 0.6 4.3e-05 23.0 0.0 3.3 3 2 1 4 4 4 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|261403101|ref|YP_003247325.1| - 1.7e-06 28.0 0.0 9.8e-06 25.5 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|261403101|ref|YP_003247325.1| - 0.00025 20.8 0.0 0.0044 16.8 0.0 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR PF01047.22 gi|261403101|ref|YP_003247325.1| - 0.0003 20.6 0.1 0.0022 17.9 0.0 2.3 3 0 0 3 3 3 1 MarR family PadR PF03551.14 gi|261403101|ref|YP_003247325.1| - 0.00031 20.6 3.2 0.014 15.3 0.0 3.6 1 1 3 4 4 4 1 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|261403101|ref|YP_003247325.1| - 0.00038 20.6 1.0 0.0012 19.0 0.1 2.2 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|261403101|ref|YP_003247325.1| - 0.00075 19.4 0.0 0.0026 17.7 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_34 PF13601.6 gi|261403101|ref|YP_003247325.1| - 0.00077 19.6 0.3 0.0024 18.0 0.1 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|261403101|ref|YP_003247325.1| - 0.00086 19.8 0.0 0.0017 18.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|261403101|ref|YP_003247325.1| - 0.0012 18.5 0.4 0.0043 16.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|261403101|ref|YP_003247325.1| - 0.014 15.4 0.4 0.24 11.4 0.0 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|261403101|ref|YP_003247325.1| - 0.018 14.8 2.5 0.059 13.1 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) DUF5343 PF17278.2 gi|261403101|ref|YP_003247325.1| - 0.02 15.0 1.7 0.033 14.3 1.7 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5343) TBPIP PF07106.13 gi|261403101|ref|YP_003247325.1| - 0.023 14.6 2.4 0.13 12.2 0.0 2.5 2 1 0 2 2 2 0 TBPIP/Hop2 winged helix domain B-block_TFIIIC PF04182.12 gi|261403101|ref|YP_003247325.1| - 0.025 14.7 0.1 0.055 13.6 0.1 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|261403101|ref|YP_003247325.1| - 0.028 14.8 0.2 0.44 10.9 0.0 2.4 3 0 0 3 3 2 0 Transcriptional regulator MMPL PF03176.15 gi|261403102|ref|YP_003247326.1| - 2.7e-28 98.9 1.1 2.7e-28 98.9 1.1 1.5 2 0 0 2 2 2 1 MMPL family SecD_SecF PF02355.16 gi|261403102|ref|YP_003247326.1| - 1e-06 28.3 4.1 1e-06 28.3 4.1 1.5 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.19 gi|261403102|ref|YP_003247326.1| - 1.1e-05 23.4 2.6 1.1e-05 23.4 2.6 1.6 2 0 0 2 2 2 1 AcrB/AcrD/AcrF family Patched PF02460.18 gi|261403102|ref|YP_003247326.1| - 0.00019 19.7 8.4 0.0017 16.5 5.8 2.0 2 0 0 2 2 2 2 Patched family DUF1761 PF08570.10 gi|261403102|ref|YP_003247326.1| - 0.025 14.8 5.6 0.057 13.7 0.2 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF1761) Glyco_transf_22 PF03901.17 gi|261403102|ref|YP_003247326.1| - 0.6 9.3 6.4 0.088 12.0 0.7 2.2 2 1 0 3 3 3 0 Alg9-like mannosyltransferase family Phage_holin_6_1 PF09682.10 gi|261403102|ref|YP_003247326.1| - 4.2 7.8 5.7 0.49 10.8 0.1 2.3 2 0 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) NPCBM_assoc PF10633.9 gi|261403103|ref|YP_003247327.1| - 8.9e-12 45.1 0.0 0.022 15.0 0.0 5.6 5 1 0 5 5 5 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|261403103|ref|YP_003247327.1| - 9.5e-08 32.2 20.7 0.14 12.4 0.6 6.0 4 3 1 5 5 5 4 CARDB DUF4625 PF15418.6 gi|261403103|ref|YP_003247327.1| - 0.00018 21.8 3.2 0.0067 16.7 0.1 3.3 4 0 0 4 4 4 1 Domain of unknown function (DUF4625) Ig_GlcNase PF18368.1 gi|261403103|ref|YP_003247327.1| - 0.0091 16.1 0.0 1.3 9.2 0.0 3.4 3 0 0 3 3 3 1 Exo-beta-D-glucosaminidase Ig-fold domain PI31_Prot_N PF11566.8 gi|261403103|ref|YP_003247327.1| - 0.017 14.9 0.0 7.5 6.3 0.0 2.3 2 0 0 2 2 2 0 PI31 proteasome regulator N-terminal TRAP_beta PF05753.14 gi|261403103|ref|YP_003247327.1| - 0.04 13.3 6.5 0.042 13.2 0.1 3.8 4 0 0 4 4 4 0 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 gi|261403103|ref|YP_003247327.1| - 0.04 14.2 9.4 12 6.3 0.1 5.2 4 2 0 4 4 4 0 Domain of unknown function DUF11 Arrestin_C PF02752.22 gi|261403103|ref|YP_003247327.1| - 0.071 13.6 8.7 0.6 10.6 1.6 3.6 3 1 0 3 3 3 0 Arrestin (or S-antigen), C-terminal domain MG2 PF01835.19 gi|261403103|ref|YP_003247327.1| - 0.074 13.5 0.1 2.9 8.4 0.0 3.1 4 0 0 4 4 4 0 MG2 domain Gram_pos_anchor PF00746.21 gi|261403103|ref|YP_003247327.1| - 0.091 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF4832 PF16116.5 gi|261403103|ref|YP_003247327.1| - 0.1 12.4 1.1 12 5.6 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4832) CBS PF00571.28 gi|261403104|ref|YP_003247328.1| - 3.5e-20 72.2 5.4 3.7e-12 46.5 0.8 2.2 2 0 0 2 2 2 2 CBS domain Peptidase_M42 PF05343.14 gi|261403105|ref|YP_003247329.1| - 1e-112 375.9 4.3 1.2e-112 375.7 4.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|261403105|ref|YP_003247329.1| - 1.8e-10 40.8 0.3 3.2e-10 40.1 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|261403105|ref|YP_003247329.1| - 9.2e-07 28.7 0.0 0.00025 20.8 0.0 2.5 2 1 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|261403105|ref|YP_003247329.1| - 0.01 14.7 0.0 0.07 11.9 0.0 2.2 2 1 1 3 3 3 0 Aminopeptidase I zinc metalloprotease (M18) Pkinase PF00069.25 gi|261403106|ref|YP_003247330.1| - 9.5e-53 179.2 0.2 2e-52 178.2 0.0 1.6 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|261403106|ref|YP_003247330.1| - 1.2e-35 123.0 0.0 2.3e-35 122.1 0.0 1.5 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|261403106|ref|YP_003247330.1| - 7.1e-06 25.5 0.0 1.8e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Kinase-like Kdo PF06293.14 gi|261403106|ref|YP_003247330.1| - 0.0003 20.2 0.0 0.00058 19.3 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|261403106|ref|YP_003247330.1| - 0.0045 16.9 0.0 0.0066 16.4 0.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family RAP PF08373.10 gi|261403106|ref|YP_003247330.1| - 0.0077 16.3 0.5 0.026 14.6 0.2 2.1 2 0 0 2 2 2 1 RAP domain RIO1 PF01163.22 gi|261403106|ref|YP_003247330.1| - 0.016 14.8 0.6 0.048 13.2 0.0 2.0 2 0 0 2 2 2 0 RIO1 family PEGA PF08308.11 gi|261403107|ref|YP_003247331.1| - 6.9e-19 67.5 0.4 2.4e-18 65.8 0.2 2.1 2 0 0 2 2 2 1 PEGA domain DUF2341 PF10102.9 gi|261403107|ref|YP_003247331.1| - 5.5e-12 46.1 0.3 1.9e-11 44.4 0.3 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) CarbopepD_reg_2 PF13715.6 gi|261403107|ref|YP_003247331.1| - 0.027 14.5 0.3 0.1 12.6 0.3 2.0 1 0 0 1 1 1 0 CarboxypepD_reg-like domain CarboxypepD_reg PF13620.6 gi|261403107|ref|YP_003247331.1| - 0.029 14.6 0.0 0.082 13.2 0.0 1.8 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain Saf_2TM PF18303.1 gi|261403107|ref|YP_003247331.1| - 0.034 13.7 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain DUF4748 PF15932.5 gi|261403107|ref|YP_003247331.1| - 0.071 12.9 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4748) Gram_pos_anchor PF00746.21 gi|261403107|ref|YP_003247331.1| - 0.095 12.7 2.1 0.43 10.6 0.0 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Svf1_C PF17187.4 gi|261403107|ref|YP_003247331.1| - 0.2 11.4 2.1 0.32 10.8 0.6 2.0 1 1 0 2 2 2 0 Svf1-like C-terminal lipocalin-like domain ATPase_2 PF01637.18 gi|261403108|ref|YP_003247332.1| - 4.8e-61 206.6 7.1 6.7e-61 206.2 7.1 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|261403108|ref|YP_003247332.1| - 7.8e-10 39.2 0.0 2e-09 37.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|261403108|ref|YP_003247332.1| - 8.7e-10 39.2 0.0 4.1e-09 37.0 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|261403108|ref|YP_003247332.1| - 1.9e-09 37.6 4.3 2.4e-05 24.3 0.1 3.4 1 1 1 3 3 3 2 AAA domain AAA PF00004.29 gi|261403108|ref|YP_003247332.1| - 3.5e-08 33.9 0.0 1.1e-07 32.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.11 gi|261403108|ref|YP_003247332.1| - 0.0012 17.8 0.0 0.0019 17.2 0.0 1.4 1 0 0 1 1 1 1 PrkA AAA domain RNA12 PF10443.9 gi|261403108|ref|YP_003247332.1| - 0.0024 16.7 0.2 0.32 9.7 0.0 2.4 3 0 0 3 3 3 2 RNA12 protein TniB PF05621.11 gi|261403108|ref|YP_003247332.1| - 0.0056 16.1 0.4 1.1 8.6 0.1 2.8 3 0 0 3 3 3 1 Bacterial TniB protein AAA_24 PF13479.6 gi|261403108|ref|YP_003247332.1| - 0.0079 15.9 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|261403108|ref|YP_003247332.1| - 0.013 15.9 0.0 0.064 13.7 0.0 2.2 2 1 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|261403108|ref|YP_003247332.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|261403108|ref|YP_003247332.1| - 0.018 15.6 0.3 0.075 13.6 0.3 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|261403108|ref|YP_003247332.1| - 0.032 14.1 0.2 0.22 11.4 0.2 2.2 1 1 0 1 1 1 0 NTPase KAP_NTPase PF07693.14 gi|261403108|ref|YP_003247332.1| - 0.041 13.1 0.3 3 7.0 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain AAA_33 PF13671.6 gi|261403108|ref|YP_003247332.1| - 0.049 13.8 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain TK PF00265.18 gi|261403108|ref|YP_003247332.1| - 0.096 12.5 0.4 3.2 7.6 0.0 2.8 2 1 1 3 3 3 0 Thymidine kinase NACHT PF05729.12 gi|261403108|ref|YP_003247332.1| - 0.097 12.6 0.0 0.81 9.6 0.0 2.2 1 1 0 1 1 1 0 NACHT domain Cep57_CLD_2 PF14197.6 gi|261403109|ref|YP_003247333.1| - 0.041 14.0 0.8 0.041 14.0 0.8 2.9 3 0 0 3 3 3 0 Centrosome localisation domain of PPC89 L31 PF09784.9 gi|261403109|ref|YP_003247333.1| - 0.17 12.3 6.2 0.65 10.4 6.2 2.0 1 1 0 1 1 1 0 Mitochondrial ribosomal protein L31 Spc24 PF08286.11 gi|261403109|ref|YP_003247333.1| - 0.32 11.3 11.4 0.24 11.7 7.2 2.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Seryl_tRNA_N PF02403.22 gi|261403109|ref|YP_003247333.1| - 0.64 10.3 15.4 0.068 13.4 9.7 2.2 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF5320 PF17253.2 gi|261403109|ref|YP_003247333.1| - 8.9 7.5 5.8 24 6.1 1.0 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5320) DUF4407 PF14362.6 gi|261403110|ref|YP_003247334.1| - 0.18 11.2 3.0 0.51 9.6 2.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Nre_C PF04895.12 gi|261403110|ref|YP_003247334.1| - 0.87 9.5 4.8 4.3 7.3 0.0 3.3 2 1 1 3 3 3 0 Archaeal Nre, C-terminal DUF5617 PF18493.1 gi|261403110|ref|YP_003247334.1| - 1.8 8.7 8.6 3 8.0 0.1 3.8 2 2 2 4 4 4 0 Domain of unknown function (DUF5617) Focal_AT PF03623.13 gi|261403110|ref|YP_003247334.1| - 2.8 7.9 10.4 1.2 9.1 5.5 2.9 3 1 0 3 3 3 0 Focal adhesion targeting region UPF0149 PF03695.13 gi|261403110|ref|YP_003247334.1| - 9.9 6.4 7.9 39 4.5 3.1 3.4 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0149) DUF5347 PF17282.2 gi|261403111|ref|YP_003247335.1| - 0.093 13.0 1.0 0.18 12.1 1.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5347) DUF475 PF04332.15 gi|261403113|ref|YP_003247337.1| - 1.4e-122 409.1 17.1 1.7e-122 408.8 17.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF475) TerC PF03741.16 gi|261403113|ref|YP_003247337.1| - 5.9e-20 71.7 17.2 9.2e-17 61.3 17.2 2.9 1 1 0 1 1 1 1 Integral membrane protein TerC family TPR_2 PF07719.17 gi|261403114|ref|YP_003247338.1| - 5.8e-51 166.6 41.8 4.1e-08 32.7 0.0 9.8 9 1 1 10 10 9 8 Tetratricopeptide repeat TPR_1 PF00515.28 gi|261403114|ref|YP_003247338.1| - 4.1e-49 162.5 58.2 5.9e-10 38.5 0.1 9.8 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261403114|ref|YP_003247338.1| - 3.5e-32 107.9 46.4 5.7e-06 26.1 0.1 10.4 10 0 0 10 10 10 8 Tetratricopeptide repeat TPR_16 PF13432.6 gi|261403114|ref|YP_003247338.1| - 5.8e-26 90.9 0.0 1.2e-05 25.8 0.0 5.6 2 2 3 6 6 6 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261403114|ref|YP_003247338.1| - 2.2e-24 84.9 38.9 2.6e-06 27.0 2.2 9.4 5 3 4 9 9 9 6 TPR repeat TPR_19 PF14559.6 gi|261403114|ref|YP_003247338.1| - 2.8e-22 79.0 2.1 0.00054 20.4 0.0 6.1 3 2 2 6 6 6 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|261403114|ref|YP_003247338.1| - 6.4e-19 68.0 22.5 2.6e-08 34.0 0.7 5.1 4 2 1 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.6 gi|261403114|ref|YP_003247338.1| - 3.1e-18 64.9 0.0 0.061 14.2 0.0 8.2 2 2 6 8 8 8 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|261403114|ref|YP_003247338.1| - 1.1e-17 64.1 7.5 0.019 15.2 0.1 7.9 5 3 2 7 7 7 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|261403114|ref|YP_003247338.1| - 1.3e-17 63.7 0.0 0.0001 22.4 0.0 5.4 4 1 1 5 5 5 4 Tetratricopeptide repeat TPR_6 PF13174.6 gi|261403114|ref|YP_003247338.1| - 2.1e-13 50.0 8.8 0.33 11.7 0.0 8.4 9 0 0 9 9 8 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|261403114|ref|YP_003247338.1| - 2.2e-13 49.2 10.5 0.0015 18.4 0.0 7.8 8 1 1 9 9 8 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|261403114|ref|YP_003247338.1| - 4e-11 42.5 25.2 0.0099 16.2 0.4 8.7 10 0 0 10 10 7 3 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|261403114|ref|YP_003247338.1| - 1.2e-07 31.7 26.5 0.0012 18.8 0.2 7.8 8 0 0 8 8 8 2 Fis1 C-terminal tetratricopeptide repeat TPR_21 PF09976.9 gi|261403114|ref|YP_003247338.1| - 5.4e-06 26.2 0.5 0.0034 17.1 0.0 3.3 2 1 1 3 3 3 1 Tetratricopeptide repeat-like domain TPR_10 PF13374.6 gi|261403114|ref|YP_003247338.1| - 7.5e-05 22.5 7.8 2.8 7.9 0.1 6.8 7 0 0 7 7 7 1 Tetratricopeptide repeat DUF3856 PF12968.7 gi|261403114|ref|YP_003247338.1| - 0.0006 19.9 2.3 1.4 9.0 0.0 4.7 3 2 0 3 3 3 1 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|261403114|ref|YP_003247338.1| - 0.0024 17.1 0.6 1 8.5 0.1 4.1 3 1 0 3 3 3 1 Tetratricopeptide repeat MIT PF04212.18 gi|261403114|ref|YP_003247338.1| - 0.0025 17.8 20.8 4.2 7.5 0.1 7.3 6 1 1 7 7 7 1 MIT (microtubule interacting and transport) domain Alpha_adaptinC2 PF02883.20 gi|261403114|ref|YP_003247338.1| - 0.011 16.0 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 Adaptin C-terminal domain TPR_20 PF14561.6 gi|261403114|ref|YP_003247338.1| - 0.016 15.5 0.0 2.5 8.5 0.0 3.4 4 1 0 4 4 3 0 Tetratricopeptide repeat YfiO PF13525.6 gi|261403114|ref|YP_003247338.1| - 0.017 14.9 3.1 0.069 12.9 0.1 3.2 2 1 2 4 4 4 0 Outer membrane lipoprotein DUF357 PF04010.13 gi|261403114|ref|YP_003247338.1| - 0.02 15.0 19.1 1.5 8.9 0.1 5.7 6 1 0 6 6 5 0 Protein of unknown function (DUF357) Rapsyn_N PF10579.9 gi|261403114|ref|YP_003247338.1| - 0.03 14.4 7.5 13 6.0 0.0 5.4 4 3 2 6 6 6 0 Rapsyn N-terminal myristoylation and linker region PPR_2 PF13041.6 gi|261403114|ref|YP_003247338.1| - 0.032 14.4 4.8 12 6.1 0.2 4.2 3 0 0 3 3 3 0 PPR repeat family Alkyl_sulf_dimr PF14863.6 gi|261403114|ref|YP_003247338.1| - 0.07 13.6 0.6 34 4.9 0.0 4.1 2 2 1 4 4 4 0 Alkyl sulfatase dimerisation PPR PF01535.20 gi|261403114|ref|YP_003247338.1| - 0.23 11.8 8.8 36 4.9 0.1 6.1 6 0 0 6 6 5 0 PPR repeat PPTA PF01239.22 gi|261403114|ref|YP_003247338.1| - 1.8 8.4 9.0 70 3.4 0.0 5.2 5 0 0 5 5 5 0 Protein prenyltransferase alpha subunit repeat PEGA PF08308.11 gi|261403115|ref|YP_003247339.1| - 3.5e-52 174.2 21.8 6.9e-18 64.3 3.5 5.1 5 0 0 5 5 5 4 PEGA domain Pkinase PF00069.25 gi|261403115|ref|YP_003247339.1| - 2.5e-51 174.6 0.0 6e-51 173.3 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|261403115|ref|YP_003247339.1| - 3.5e-36 124.8 0.0 6.6e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase DUF2846 PF11008.8 gi|261403115|ref|YP_003247339.1| - 1.9e-08 34.2 5.1 0.0021 18.0 0.7 4.5 3 1 1 4 4 4 2 Protein of unknown function (DUF2846) CarboxypepD_reg PF13620.6 gi|261403115|ref|YP_003247339.1| - 2.4e-07 30.9 0.1 0.22 11.8 0.1 4.0 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Kinase-like PF14531.6 gi|261403115|ref|YP_003247339.1| - 0.0018 17.7 0.1 0.25 10.6 0.0 2.6 3 0 0 3 3 3 1 Kinase-like EntA_Immun PF08951.10 gi|261403115|ref|YP_003247339.1| - 0.0074 16.6 2.2 0.02 15.2 2.2 1.8 1 0 0 1 1 1 1 Enterocin A Immunity APH PF01636.23 gi|261403115|ref|YP_003247339.1| - 0.011 15.7 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|261403115|ref|YP_003247339.1| - 0.019 13.8 0.4 0.082 11.7 0.0 1.9 2 0 0 2 2 2 0 Fungal protein kinase PEP-CTERM PF07589.11 gi|261403115|ref|YP_003247339.1| - 0.38 10.9 1.7 0.65 10.2 1.7 1.4 1 0 0 1 1 1 0 PEP-CTERM motif CarbopepD_reg_2 PF13715.6 gi|261403115|ref|YP_003247339.1| - 1.6 8.7 5.9 1.3 9.1 0.1 3.7 6 0 0 6 6 6 0 CarboxypepD_reg-like domain DUF1664 PF07889.12 gi|261403115|ref|YP_003247339.1| - 6 6.9 7.0 43 4.2 3.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) PP2C PF00481.21 gi|261403116|ref|YP_003247340.1| - 2.7e-19 69.8 1.2 1.1e-12 48.2 0.2 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C PP2C_2 PF13672.6 gi|261403116|ref|YP_003247340.1| - 3.6e-18 66.0 0.0 4.7e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|261403116|ref|YP_003247340.1| - 3.4e-09 36.9 0.2 2.3e-08 34.2 0.2 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) AAA PF00004.29 gi|261403117|ref|YP_003247341.1| - 4.8e-38 130.6 0.1 2.1e-37 128.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Vps4_C PF09336.10 gi|261403117|ref|YP_003247341.1| - 2.8e-08 33.7 0.0 9.2e-08 32.0 0.0 1.9 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_lid_3 PF17862.1 gi|261403117|ref|YP_003247341.1| - 1.8e-06 27.6 0.1 5.5e-06 26.1 0.1 1.9 1 1 0 1 1 1 1 AAA+ lid domain RuvB_N PF05496.12 gi|261403117|ref|YP_003247341.1| - 2.1e-06 27.6 0.0 3.7e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|261403117|ref|YP_003247341.1| - 1.8e-05 25.2 0.0 0.00047 20.6 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|261403117|ref|YP_003247341.1| - 4.1e-05 23.9 1.6 0.12 12.7 0.1 3.0 2 1 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|261403117|ref|YP_003247341.1| - 7.9e-05 22.7 0.0 0.00054 20.0 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|261403117|ref|YP_003247341.1| - 0.0001 22.5 0.5 0.00061 20.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|261403117|ref|YP_003247341.1| - 0.0012 18.6 0.2 0.0038 17.0 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|261403117|ref|YP_003247341.1| - 0.0015 17.8 1.0 0.004 16.4 0.0 2.2 2 1 0 2 2 2 1 TIP49 P-loop domain ATPase PF06745.13 gi|261403117|ref|YP_003247341.1| - 0.0063 15.9 4.3 1.6 8.0 0.0 3.2 2 1 2 4 4 4 2 KaiC AAA_14 PF13173.6 gi|261403117|ref|YP_003247341.1| - 0.0077 16.3 0.5 0.046 13.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|261403117|ref|YP_003247341.1| - 0.011 15.3 0.5 0.036 13.6 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|261403117|ref|YP_003247341.1| - 0.011 15.1 0.1 0.031 13.7 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.18 gi|261403117|ref|YP_003247341.1| - 0.011 15.6 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_18 PF13238.6 gi|261403117|ref|YP_003247341.1| - 0.018 15.6 0.5 0.14 12.7 0.0 2.6 2 2 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|261403117|ref|YP_003247341.1| - 0.018 14.5 0.1 0.052 13.0 0.1 1.8 1 1 1 2 2 2 0 PhoH-like protein AAA_33 PF13671.6 gi|261403117|ref|YP_003247341.1| - 0.037 14.2 0.0 0.14 12.3 0.0 2.1 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.22 gi|261403117|ref|YP_003247341.1| - 0.053 13.9 0.4 0.64 10.4 0.0 2.8 2 1 1 3 3 3 0 RNA helicase AAA_28 PF13521.6 gi|261403117|ref|YP_003247341.1| - 0.073 13.3 0.8 3.4 7.9 0.1 2.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|261403117|ref|YP_003247341.1| - 0.11 12.0 0.5 0.45 10.1 0.3 1.9 1 1 0 2 2 2 0 AAA domain Baculo_F PF12259.8 gi|261403118|ref|YP_003247342.1| - 0.27 9.7 8.5 0.37 9.3 8.5 1.1 1 0 0 1 1 1 0 Baculovirus F protein DivIC PF04977.15 gi|261403118|ref|YP_003247342.1| - 0.46 10.3 9.6 0.9 9.3 2.0 2.8 1 1 1 2 2 2 0 Septum formation initiator DUF4140 PF13600.6 gi|261403118|ref|YP_003247342.1| - 0.97 9.9 11.8 11 6.5 1.2 3.2 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) Serine_rich PF08824.10 gi|261403118|ref|YP_003247342.1| - 1.2 9.2 10.7 1.8 8.6 0.5 2.2 1 1 1 2 2 2 0 Serine rich protein interaction domain DUF4988 PF16378.5 gi|261403118|ref|YP_003247342.1| - 1.6 8.3 8.2 1.5 8.4 2.5 2.5 1 1 1 2 2 2 0 Domain of unknown function DUF2312 PF10073.9 gi|261403118|ref|YP_003247342.1| - 1.7 8.3 9.1 0.72 9.5 1.3 2.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) FAM76 PF16046.5 gi|261403118|ref|YP_003247342.1| - 5 6.4 9.4 9.3 5.5 9.4 1.4 1 0 0 1 1 1 0 FAM76 protein ABC_tran_CTD PF16326.5 gi|261403118|ref|YP_003247342.1| - 8.1 6.8 10.9 10 6.5 5.0 3.1 2 1 0 2 2 2 0 ABC transporter C-terminal domain DUF1664 PF07889.12 gi|261403118|ref|YP_003247342.1| - 8.6 6.4 9.6 1.2 9.2 0.7 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) TPR_2 PF07719.17 gi|261403119|ref|YP_003247343.1| - 4.8e-61 198.0 81.0 1.5e-09 37.2 0.4 15.6 15 0 0 15 15 15 14 Tetratricopeptide repeat Pkinase PF00069.25 gi|261403119|ref|YP_003247343.1| - 7.2e-54 182.9 2.9 1.3e-53 182.0 0.0 2.8 3 0 0 3 3 3 1 Protein kinase domain TPR_1 PF00515.28 gi|261403119|ref|YP_003247343.1| - 1.5e-49 163.8 105.5 2.1e-11 43.1 1.7 15.7 15 0 0 15 15 15 13 Tetratricopeptide repeat TPR_19 PF14559.6 gi|261403119|ref|YP_003247343.1| - 1.3e-40 137.7 13.3 1.7e-07 31.6 0.0 10.4 8 3 2 10 10 10 6 Tetratricopeptide repeat Pkinase_Tyr PF07714.17 gi|261403119|ref|YP_003247343.1| - 3.2e-38 131.5 0.0 6.9e-38 130.4 0.0 1.6 1 0 0 1 1 1 1 Protein tyrosine kinase TPR_16 PF13432.6 gi|261403119|ref|YP_003247343.1| - 1e-33 115.7 0.0 1.1e-05 26.0 0.0 9.9 6 2 3 10 10 10 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261403119|ref|YP_003247343.1| - 3.4e-33 111.1 89.8 1.9e-06 27.6 0.5 15.2 15 0 0 15 15 14 11 Tetratricopeptide repeat TPR_12 PF13424.6 gi|261403119|ref|YP_003247343.1| - 1.8e-29 101.8 30.4 5.9e-06 26.5 0.2 11.9 8 5 1 10 10 9 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|261403119|ref|YP_003247343.1| - 8.7e-28 94.6 0.0 0.029 15.2 0.0 11.7 8 3 3 12 12 12 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261403119|ref|YP_003247343.1| - 4.1e-26 90.4 75.8 8.9e-11 41.3 1.7 14.1 12 3 3 15 15 14 8 TPR repeat TPR_7 PF13176.6 gi|261403119|ref|YP_003247343.1| - 2.6e-23 80.3 21.4 0.0068 16.4 0.1 12.7 14 0 0 14 14 13 5 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|261403119|ref|YP_003247343.1| - 1.6e-21 76.3 56.2 0.00042 20.5 1.0 9.2 3 2 6 10 10 10 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|261403119|ref|YP_003247343.1| - 7.4e-20 70.2 32.8 0.024 15.3 0.0 14.0 14 0 0 14 14 14 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|261403119|ref|YP_003247343.1| - 1.5e-11 44.1 75.4 0.0031 17.5 0.2 13.5 9 3 6 15 15 14 5 Fis1 C-terminal tetratricopeptide repeat TPR_9 PF13371.6 gi|261403119|ref|YP_003247343.1| - 3.9e-11 42.9 0.0 0.045 13.9 0.0 6.6 6 1 1 7 7 7 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|261403119|ref|YP_003247343.1| - 5.6e-08 32.6 58.3 0.00012 22.2 1.5 11.4 13 1 0 13 13 9 3 Tetratricopeptide repeat Alkyl_sulf_dimr PF14863.6 gi|261403119|ref|YP_003247343.1| - 1.2e-07 32.2 10.5 0.79 10.2 0.1 6.2 1 1 6 7 7 7 3 Alkyl sulfatase dimerisation TPR_15 PF13429.6 gi|261403119|ref|YP_003247343.1| - 7.8e-07 28.6 11.0 0.86 8.8 0.0 7.0 3 2 3 6 6 6 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|261403119|ref|YP_003247343.1| - 3.9e-06 26.5 18.6 0.046 13.6 0.1 9.9 12 0 0 12 12 11 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|261403119|ref|YP_003247343.1| - 1.3e-05 25.4 7.6 0.69 10.3 0.0 6.9 4 2 4 8 8 8 1 Tetratricopeptide repeat DUF627 PF04781.12 gi|261403119|ref|YP_003247343.1| - 2.8e-05 24.1 23.1 1.8 8.6 0.0 9.5 6 3 5 11 11 9 1 Protein of unknown function (DUF627) BTAD PF03704.17 gi|261403119|ref|YP_003247343.1| - 3.8e-05 24.2 0.0 0.013 15.9 0.0 3.3 4 0 0 4 4 2 1 Bacterial transcriptional activator domain Kinase-like PF14531.6 gi|261403119|ref|YP_003247343.1| - 0.00064 19.1 0.0 0.0029 17.0 0.0 2.1 2 0 0 2 2 2 1 Kinase-like Kdo PF06293.14 gi|261403119|ref|YP_003247343.1| - 0.00084 18.8 0.0 0.0018 17.7 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RPN7 PF10602.9 gi|261403119|ref|YP_003247343.1| - 0.0037 17.0 39.8 0.21 11.3 0.1 9.0 2 2 7 9 9 9 2 26S proteasome subunit RPN7 Foie-gras_1 PF11817.8 gi|261403119|ref|YP_003247343.1| - 0.012 15.2 1.5 9.4 5.7 0.1 4.7 3 2 2 5 5 5 0 Foie gras liver health family 1 PPR PF01535.20 gi|261403119|ref|YP_003247343.1| - 0.012 15.8 18.9 14 6.2 0.0 9.6 10 0 0 10 10 9 0 PPR repeat APH PF01636.23 gi|261403119|ref|YP_003247343.1| - 0.013 15.4 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 Phosphotransferase enzyme family TPR_3 PF07720.12 gi|261403119|ref|YP_003247343.1| - 0.015 15.3 0.2 0.015 15.3 0.2 8.3 9 0 0 9 9 9 0 Tetratricopeptide repeat DUF5588 PF17826.1 gi|261403119|ref|YP_003247343.1| - 0.037 12.9 4.0 0.79 8.5 0.1 3.6 2 2 0 3 3 3 0 Family of unknown function (DUF5588) PknG_TPR PF16918.5 gi|261403119|ref|YP_003247343.1| - 0.039 12.7 0.0 0.16 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein kinase G tetratricopeptide repeat Sel1 PF08238.12 gi|261403119|ref|YP_003247343.1| - 0.048 14.4 9.2 11 6.9 0.4 5.1 5 0 0 5 5 3 0 Sel1 repeat HrpB1_HrpK PF09613.10 gi|261403119|ref|YP_003247343.1| - 0.13 11.9 0.0 7.7 6.2 0.0 3.1 3 0 0 3 3 2 0 Bacterial type III secretion protein (HrpB1_HrpK) DUF3856 PF12968.7 gi|261403119|ref|YP_003247343.1| - 0.83 9.7 12.6 4.9 7.2 0.3 6.3 6 3 1 8 8 6 0 Domain of Unknown Function (DUF3856) MIT PF04212.18 gi|261403119|ref|YP_003247343.1| - 1.3 9.1 65.9 0.47 10.6 0.4 12.9 9 4 3 13 13 13 0 MIT (microtubule interacting and transport) domain Tn7_Tnp_TnsA_C PF08721.11 gi|261403119|ref|YP_003247343.1| - 7.2 7.3 11.8 0.52 11.0 0.4 4.5 4 0 0 4 4 3 0 TnsA endonuclease C terminal Pkinase PF00069.25 gi|261403120|ref|YP_003247344.1| - 1.4e-48 165.5 0.8 1.4e-48 165.5 0.8 2.1 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|261403120|ref|YP_003247344.1| - 3.3e-31 108.5 0.8 4.5e-31 108.1 0.0 1.6 2 0 0 2 2 2 1 Protein tyrosine kinase TBCC_N PF16752.5 gi|261403120|ref|YP_003247344.1| - 0.00035 21.0 10.6 0.0017 18.8 1.2 3.3 3 0 0 3 3 3 2 Tubulin-specific chaperone C N-terminal domain Kinase-like PF14531.6 gi|261403120|ref|YP_003247344.1| - 0.0014 18.0 0.0 0.003 16.9 0.0 1.6 1 0 0 1 1 1 1 Kinase-like Cache_3-Cache_2 PF17201.4 gi|261403120|ref|YP_003247344.1| - 0.0068 15.7 0.1 0.0068 15.7 0.1 2.0 2 0 0 2 2 2 1 Cache 3/Cache 2 fusion domain APH PF01636.23 gi|261403120|ref|YP_003247344.1| - 0.22 11.4 0.0 0.35 10.8 0.0 1.2 1 0 0 1 1 1 0 Phosphotransferase enzyme family SH3_13 PF18335.1 gi|261403120|ref|YP_003247344.1| - 0.82 9.5 5.4 0.21 11.4 0.6 2.7 3 1 0 3 3 3 0 ATP-dependent RecD-like DNA helicase SH3 domain WAC_Acf1_DNA_bd PF10537.9 gi|261403120|ref|YP_003247344.1| - 0.87 10.2 3.5 11 6.6 0.1 2.7 2 0 0 2 2 2 0 ATP-utilising chromatin assembly and remodelling N-terminal Syntaxin-18_N PF10496.9 gi|261403120|ref|YP_003247344.1| - 8.4 6.7 9.4 5.3 7.4 0.3 3.1 1 1 1 2 2 2 0 SNARE-complex protein Syntaxin-18 N-terminus MIT PF04212.18 gi|261403121|ref|YP_003247345.1| - 0.0046 17.0 1.0 0.0046 17.0 1.0 1.6 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain Herpes_glycop PF01528.16 gi|261403121|ref|YP_003247345.1| - 0.031 13.1 1.2 0.043 12.7 1.2 1.2 1 0 0 1 1 1 0 Herpesvirus glycoprotein M Mut7-C PF01927.16 gi|261403121|ref|YP_003247345.1| - 0.044 13.9 0.1 0.064 13.4 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain TPR_2 PF07719.17 gi|261403122|ref|YP_003247346.1| - 6.5e-08 32.1 18.6 0.095 12.9 0.2 5.9 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261403122|ref|YP_003247346.1| - 1.2e-07 31.2 17.5 0.14 11.9 0.1 5.3 5 1 0 5 5 5 4 TPR repeat TPR_16 PF13432.6 gi|261403122|ref|YP_003247346.1| - 0.00015 22.3 0.1 19 6.0 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|261403122|ref|YP_003247346.1| - 0.015 15.9 6.5 4.5 8.1 0.2 4.8 4 0 0 4 4 4 0 Tetratricopeptide repeat COPI_C PF06957.11 gi|261403122|ref|YP_003247346.1| - 0.017 13.9 4.9 0.098 11.4 3.4 2.4 1 1 2 3 3 3 0 Coatomer (COPI) alpha subunit C-terminus Rapsyn_N PF10579.9 gi|261403122|ref|YP_003247346.1| - 0.041 14.0 14.3 3.2 7.9 0.2 4.5 4 0 0 4 4 4 0 Rapsyn N-terminal myristoylation and linker region TPR_1 PF00515.28 gi|261403122|ref|YP_003247346.1| - 0.046 13.6 23.6 0.061 13.2 0.5 6.0 5 1 1 6 6 6 0 Tetratricopeptide repeat Aida_N PF08910.10 gi|261403122|ref|YP_003247346.1| - 0.066 13.6 11.9 2.2 8.7 0.4 3.9 1 1 2 4 4 4 0 Aida N-terminus TPR_20 PF14561.6 gi|261403122|ref|YP_003247346.1| - 0.14 12.5 8.4 3.5 8.0 0.1 3.4 1 1 2 3 3 3 0 Tetratricopeptide repeat TPR_3 PF07720.12 gi|261403122|ref|YP_003247346.1| - 0.15 12.1 6.0 3.4 7.8 0.4 3.9 3 0 0 3 3 3 0 Tetratricopeptide repeat pPIWI_RE_Z PF18155.1 gi|261403122|ref|YP_003247346.1| - 0.16 11.8 1.9 0.74 9.7 0.1 2.6 3 1 0 3 3 2 0 pPIWI RE three-gene island domain Z TPR_10 PF13374.6 gi|261403122|ref|YP_003247346.1| - 0.24 11.3 3.4 14 5.7 0.1 4.1 4 1 0 4 4 4 0 Tetratricopeptide repeat SLT_L PF14718.6 gi|261403122|ref|YP_003247346.1| - 0.37 11.0 8.8 1.9 8.7 0.1 4.1 5 0 0 5 5 5 0 Soluble lytic murein transglycosylase L domain Arg_decarbox_C PF17944.1 gi|261403122|ref|YP_003247346.1| - 0.4 11.3 8.5 1.2 9.7 0.7 3.4 2 1 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Cytochrom_B562 PF07361.11 gi|261403122|ref|YP_003247346.1| - 4.7 7.9 21.6 3.7 8.2 6.4 3.7 4 0 0 4 4 3 0 Cytochrome b562 ECH_2 PF16113.5 gi|261403122|ref|YP_003247346.1| - 6.2 6.2 12.2 1.5 8.3 5.4 2.3 1 1 1 2 2 2 0 Enoyl-CoA hydratase/isomerase TPR_8 PF13181.6 gi|261403122|ref|YP_003247346.1| - 6.6 7.2 24.2 2.2 8.7 0.6 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat FRB_dom PF08771.11 gi|261403122|ref|YP_003247346.1| - 6.9 7.1 17.7 4.2 7.9 5.1 3.4 2 1 1 3 3 3 0 FKBP12-rapamycin binding domain ERCC4 PF02732.15 gi|261403123|ref|YP_003247347.1| - 5.1e-24 85.2 0.7 5.1e-24 85.2 0.7 2.9 1 1 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|261403123|ref|YP_003247347.1| - 5.8e-24 84.6 0.4 5.8e-24 84.6 0.4 4.4 5 1 0 5 5 5 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|261403123|ref|YP_003247347.1| - 1.2e-20 74.2 0.1 1.2e-20 74.2 0.1 4.0 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|261403123|ref|YP_003247347.1| - 1.8e-18 66.9 0.1 1.8e-18 66.9 0.1 3.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_2 PF12826.7 gi|261403123|ref|YP_003247347.1| - 1.5e-10 41.0 0.1 6.1e-10 39.1 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|261403123|ref|YP_003247347.1| - 3.3e-10 40.4 1.2 2.8e-08 34.2 0.1 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|261403123|ref|YP_003247347.1| - 3.5e-08 32.9 1.9 2.1e-06 27.3 0.0 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif bact-PGI_C PF10432.9 gi|261403123|ref|YP_003247347.1| - 0.023 14.8 0.1 0.09 12.8 0.1 2.0 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain HHH_8 PF14716.6 gi|261403123|ref|YP_003247347.1| - 0.028 14.8 4.1 0.59 10.5 0.1 3.3 2 1 1 3 3 3 0 Helix-hairpin-helix domain Helicase_RecD PF05127.14 gi|261403123|ref|YP_003247347.1| - 0.66 9.8 0.0 0.66 9.8 0.0 3.4 3 1 0 3 3 3 0 Helicase Helicase_C_2 PF13307.6 gi|261403123|ref|YP_003247347.1| - 1.3 9.1 11.9 0.14 12.3 0.4 3.6 3 2 1 4 4 3 0 Helicase C-terminal domain KOW PF00467.29 gi|261403124|ref|YP_003247348.1| - 3.1e-05 23.8 1.4 5.3e-05 23.0 1.4 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.17 gi|261403124|ref|YP_003247348.1| - 0.00063 20.2 0.1 0.00086 19.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L14 Cytidylate_kin2 PF13189.6 gi|261403125|ref|YP_003247349.1| - 5e-28 98.4 1.0 6.2e-26 91.6 1.0 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|261403125|ref|YP_003247349.1| - 9.6e-16 58.4 0.1 1.7e-15 57.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|261403125|ref|YP_003247349.1| - 1.1e-14 55.1 0.4 1.4e-14 54.7 0.4 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|261403125|ref|YP_003247349.1| - 1.1e-11 45.0 0.5 6.3e-07 29.3 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|261403125|ref|YP_003247349.1| - 5.2e-07 29.9 0.3 8.8e-06 25.9 0.3 2.1 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|261403125|ref|YP_003247349.1| - 1.9e-05 24.9 0.1 4.4e-05 23.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|261403125|ref|YP_003247349.1| - 5.7e-05 22.9 1.3 0.0084 15.8 0.1 2.3 1 1 0 2 2 2 2 Thymidylate kinase SKI PF01202.22 gi|261403125|ref|YP_003247349.1| - 7.3e-05 22.9 1.0 0.00012 22.2 1.0 1.4 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.29 gi|261403125|ref|YP_003247349.1| - 0.0021 18.5 0.0 0.0036 17.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) dNK PF01712.19 gi|261403125|ref|YP_003247349.1| - 0.003 17.4 4.3 0.1 12.4 0.9 3.0 1 1 1 2 2 2 1 Deoxynucleoside kinase KTI12 PF08433.10 gi|261403125|ref|YP_003247349.1| - 0.031 13.7 0.1 0.053 13.0 0.1 1.3 1 1 0 1 1 1 0 Chromatin associated protein KTI12 CoaE PF01121.20 gi|261403125|ref|YP_003247349.1| - 0.042 13.5 0.0 2.3 7.9 0.0 2.1 2 0 0 2 2 2 0 Dephospho-CoA kinase AAA_28 PF13521.6 gi|261403125|ref|YP_003247349.1| - 0.049 13.9 0.2 0.089 13.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain Ribosomal_L34e PF01199.18 gi|261403126|ref|YP_003247350.1| - 1.5e-28 99.0 4.7 1.6e-28 98.9 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.6 gi|261403126|ref|YP_003247350.1| - 0.0062 16.4 0.5 0.82 9.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) DZR PF12773.7 gi|261403126|ref|YP_003247350.1| - 0.072 13.1 0.1 0.1 12.7 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNF220 PF15926.5 gi|261403126|ref|YP_003247350.1| - 0.24 11.0 0.1 0.32 10.6 0.1 1.2 1 0 0 1 1 1 0 E3 ubiquitin-protein ligase RNF220 DHO_dh PF01180.21 gi|261403127|ref|YP_003247351.1| - 1.8e-91 306.4 4.4 2e-91 306.2 4.4 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|261403127|ref|YP_003247351.1| - 1.2e-11 44.3 1.0 1.5e-10 40.7 1.0 2.0 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|261403127|ref|YP_003247351.1| - 0.001 18.6 1.0 0.001 18.6 1.0 2.6 1 1 2 3 3 3 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|261403127|ref|YP_003247351.1| - 0.0075 15.8 0.1 0.041 13.3 0.0 2.0 2 1 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|261403127|ref|YP_003247351.1| - 0.014 14.5 2.0 0.049 12.7 2.0 2.0 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PcrB PF01884.17 gi|261403127|ref|YP_003247351.1| - 0.019 14.5 3.2 0.41 10.1 0.2 3.0 3 0 0 3 3 3 0 PcrB family IMPDH PF00478.25 gi|261403127|ref|YP_003247351.1| - 0.024 13.7 4.7 0.038 13.0 0.6 2.3 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|261403127|ref|YP_003247351.1| - 0.2 10.9 1.6 0.56 9.5 1.6 1.8 1 1 0 1 1 1 0 Thiazole biosynthesis protein ThiG CBS PF00571.28 gi|261403128|ref|YP_003247352.1| - 1.7e-32 111.6 3.8 2.4e-16 59.9 0.0 2.3 2 0 0 2 2 2 2 CBS domain HypA PF01155.19 gi|261403128|ref|YP_003247352.1| - 0.036 14.1 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UvrC_HhH_N PF08459.11 gi|261403128|ref|YP_003247352.1| - 0.038 13.9 0.2 0.074 13.0 0.1 1.4 1 1 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal OrfB_Zn_ribbon PF07282.11 gi|261403128|ref|YP_003247352.1| - 0.084 12.8 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|261403128|ref|YP_003247352.1| - 0.28 11.2 3.4 12 5.9 0.3 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Thymidylate_kin PF02223.17 gi|261403129|ref|YP_003247353.1| - 1e-50 172.0 0.3 1.2e-50 171.8 0.3 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.6 gi|261403129|ref|YP_003247353.1| - 2.4e-08 34.4 0.0 3.4e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|261403129|ref|YP_003247353.1| - 3.5e-07 30.3 1.2 3.9e-06 26.9 1.2 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_17 PF13207.6 gi|261403129|ref|YP_003247353.1| - 1.5e-06 28.7 0.2 0.00011 22.6 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|261403129|ref|YP_003247353.1| - 1.9e-06 28.5 0.6 9.3e-06 26.2 0.6 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|261403129|ref|YP_003247353.1| - 0.00041 20.5 1.6 0.61 10.2 0.2 2.3 2 0 0 2 2 2 2 Shikimate kinase SRP54 PF00448.22 gi|261403129|ref|YP_003247353.1| - 0.0026 17.4 0.2 0.037 13.6 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|261403129|ref|YP_003247353.1| - 0.0028 18.0 0.3 0.32 11.4 0.0 2.5 2 1 0 2 2 2 1 RNA helicase Cytidylate_kin PF02224.18 gi|261403129|ref|YP_003247353.1| - 0.0031 17.3 1.2 1.3 8.7 0.1 2.3 2 1 0 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|261403129|ref|YP_003247353.1| - 0.0084 16.3 0.0 0.025 14.7 0.0 1.9 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|261403129|ref|YP_003247353.1| - 0.011 16.1 0.6 0.044 14.2 0.6 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|261403129|ref|YP_003247353.1| - 0.025 14.5 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_22 PF13401.6 gi|261403129|ref|YP_003247353.1| - 0.038 14.3 0.2 0.86 9.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|261403129|ref|YP_003247353.1| - 0.11 12.4 0.0 2.6 7.9 0.0 2.4 2 1 0 2 2 2 0 NACHT domain KAP_NTPase PF07693.14 gi|261403129|ref|YP_003247353.1| - 0.11 11.7 1.3 1.7 7.8 1.3 2.1 1 1 0 1 1 1 0 KAP family P-loop domain CbiA PF01656.23 gi|261403129|ref|YP_003247353.1| - 0.15 12.1 0.0 2.9 8.0 0.0 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain His_biosynth PF00977.21 gi|261403130|ref|YP_003247354.1| - 6.7e-73 244.9 6.2 7.6e-73 244.7 6.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|261403130|ref|YP_003247354.1| - 2.6e-13 49.8 2.0 3.5e-06 26.3 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|261403130|ref|YP_003247354.1| - 8.2e-10 38.4 1.6 0.00031 20.1 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|261403130|ref|YP_003247354.1| - 7.1e-08 31.9 1.0 0.0067 15.6 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.20 gi|261403130|ref|YP_003247354.1| - 3.2e-07 29.4 2.3 0.001 18.0 0.2 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain QRPTase_C PF01729.19 gi|261403130|ref|YP_003247354.1| - 3e-06 27.1 1.4 0.0042 16.9 0.2 2.2 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain TMP-TENI PF02581.17 gi|261403130|ref|YP_003247354.1| - 5e-06 26.0 2.8 0.011 15.1 0.1 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase IGPS PF00218.21 gi|261403130|ref|YP_003247354.1| - 8.1e-06 25.2 0.6 0.00015 21.0 0.6 2.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase G3P_antiterm PF04309.12 gi|261403130|ref|YP_003247354.1| - 5.2e-05 22.7 2.7 0.0058 16.1 0.2 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator NMO PF03060.15 gi|261403130|ref|YP_003247354.1| - 0.00011 21.8 1.4 0.0012 18.3 0.0 2.2 1 1 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|261403130|ref|YP_003247354.1| - 0.00017 20.7 2.6 0.014 14.4 0.2 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase PEP_mutase PF13714.6 gi|261403130|ref|YP_003247354.1| - 0.00091 18.7 0.0 0.32 10.4 0.0 2.1 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase IMPDH PF00478.25 gi|261403130|ref|YP_003247354.1| - 0.0016 17.5 5.5 0.1 11.6 0.3 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|261403130|ref|YP_003247354.1| - 0.0049 16.1 4.6 0.015 14.6 2.1 2.3 2 1 1 3 3 3 1 Dihydroorotate dehydrogenase Radical_SAM PF04055.21 gi|261403130|ref|YP_003247354.1| - 0.0053 17.1 1.3 2.8 8.3 0.1 2.1 1 1 1 2 2 2 2 Radical SAM superfamily Ribul_P_3_epim PF00834.19 gi|261403130|ref|YP_003247354.1| - 0.01 15.3 5.6 0.42 10.0 0.8 2.5 3 0 0 3 3 3 0 Ribulose-phosphate 3 epimerase family HMGL-like PF00682.19 gi|261403130|ref|YP_003247354.1| - 0.015 14.9 0.3 0.41 10.2 0.1 2.5 3 0 0 3 3 3 0 HMGL-like NAD_binding_4 PF07993.12 gi|261403130|ref|YP_003247354.1| - 0.021 14.0 0.1 0.042 13.0 0.0 1.5 2 0 0 2 2 2 0 Male sterility protein TIM PF00121.18 gi|261403130|ref|YP_003247354.1| - 0.023 14.0 1.8 0.038 13.4 0.6 1.8 2 0 0 2 2 2 0 Triosephosphate isomerase DNA_pol_lambd_f PF10391.9 gi|261403130|ref|YP_003247354.1| - 0.14 12.0 0.0 4.5 7.2 0.0 2.8 2 1 0 2 2 2 0 Fingers domain of DNA polymerase lambda SNase PF00565.17 gi|261403131|ref|YP_003247355.1| - 1.2e-31 109.4 0.3 1.9e-31 108.7 0.1 1.4 2 0 0 2 2 2 1 Staphylococcal nuclease homologue GHMP_kinases_N PF00288.26 gi|261403132|ref|YP_003247356.1| - 4.7e-10 39.6 0.1 1.5e-09 37.9 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|261403132|ref|YP_003247356.1| - 9.7e-05 22.7 0.0 0.00021 21.6 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal SNO PF01174.19 gi|261403133|ref|YP_003247357.1| - 1.9e-76 256.1 0.0 2.1e-76 256.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase PF00117.28 gi|261403133|ref|YP_003247357.1| - 2.1e-10 40.7 0.0 2.9e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|261403133|ref|YP_003247357.1| - 1.9e-05 24.4 0.0 2.6e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain UPF0180 PF03698.13 gi|261403133|ref|YP_003247357.1| - 0.001 19.2 0.0 0.012 15.7 0.0 2.2 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0180) Peptidase_C26 PF07722.13 gi|261403133|ref|YP_003247357.1| - 0.012 15.4 0.1 0.073 12.8 0.1 2.3 1 1 0 1 1 1 0 Peptidase C26 DJ-1_PfpI PF01965.24 gi|261403133|ref|YP_003247357.1| - 0.033 14.0 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family Endonuc-FokI_C PF09254.11 gi|261403134|ref|YP_003247358.1| - 0.014 14.7 3.7 0.078 12.2 1.3 2.6 2 0 0 2 2 2 0 Restriction endonuclease FokI, C terminal LolA PF03548.15 gi|261403134|ref|YP_003247358.1| - 0.9 9.2 4.0 1.1 8.9 0.3 2.6 3 0 0 3 3 3 0 Outer membrane lipoprotein carrier protein LolA UPF0020 PF01170.18 gi|261403135|ref|YP_003247359.1| - 5.5e-12 45.8 0.2 2.7e-05 23.9 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|261403135|ref|YP_003247359.1| - 1.1e-06 28.6 20.4 0.0016 18.2 5.0 3.7 3 1 0 3 3 3 2 DNA methylase DUF1156 PF06634.12 gi|261403135|ref|YP_003247359.1| - 0.0013 18.8 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) DZR PF12773.7 gi|261403135|ref|YP_003247359.1| - 0.0016 18.4 12.6 34 4.6 12.6 3.7 1 1 0 1 1 1 0 Double zinc ribbon AviRa PF11599.8 gi|261403135|ref|YP_003247359.1| - 0.0052 16.3 0.0 0.27 10.7 0.0 2.4 2 0 0 2 2 2 1 RRNA methyltransferase AviRa zinc-ribbons_6 PF07191.12 gi|261403135|ref|YP_003247359.1| - 0.0059 16.6 11.5 1.3 9.0 0.7 3.2 1 1 1 2 2 2 1 zinc-ribbons TackOD1 PF18551.1 gi|261403135|ref|YP_003247359.1| - 0.0064 16.2 13.6 0.17 11.6 6.0 2.7 1 1 1 2 2 2 2 Thaumarchaeal output domain 1 DnaJ_CXXCXGXG PF00684.19 gi|261403135|ref|YP_003247359.1| - 0.02 15.2 6.5 0.32 11.4 0.5 2.8 2 0 0 2 2 2 0 DnaJ central domain DUF4024 PF13216.6 gi|261403135|ref|YP_003247359.1| - 0.038 13.9 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF4024) N6-adenineMlase PF10237.9 gi|261403135|ref|YP_003247359.1| - 0.05 13.4 2.2 0.084 12.7 0.2 2.2 2 0 0 2 2 2 0 Probable N6-adenine methyltransferase HypA PF01155.19 gi|261403135|ref|YP_003247359.1| - 0.05 13.6 14.9 0.26 11.3 0.8 4.1 2 1 2 4 4 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Terminase_GpA PF05876.12 gi|261403135|ref|YP_003247359.1| - 0.062 11.8 4.4 3.2 6.2 3.7 3.2 2 1 0 2 2 2 0 Phage terminase large subunit (GpA) zinc_ribbon_9 PF14369.6 gi|261403135|ref|YP_003247359.1| - 0.12 12.7 18.8 32 4.9 0.1 6.3 5 1 1 6 6 6 0 zinc-ribbon ParA PF10609.9 gi|261403135|ref|YP_003247359.1| - 0.15 11.5 0.4 1 8.8 0.1 2.2 1 1 1 2 2 2 0 NUBPL iron-transfer P-loop NTPase Zn_Tnp_IS1595 PF12760.7 gi|261403135|ref|YP_003247359.1| - 0.15 12.1 18.2 7.9 6.6 0.2 5.1 3 2 1 4 4 4 0 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|261403135|ref|YP_003247359.1| - 0.2 11.6 14.1 5.8 6.9 0.6 4.3 4 0 0 4 4 4 0 Cysteine-rich CPXCG YacG PF03884.14 gi|261403135|ref|YP_003247359.1| - 0.32 10.7 12.1 0.45 10.3 0.6 3.9 4 0 0 4 4 4 0 DNA gyrase inhibitor YacG LIM PF00412.22 gi|261403135|ref|YP_003247359.1| - 0.46 10.8 6.7 4.4 7.6 0.3 3.4 2 1 1 3 3 3 0 LIM domain zf-Di19 PF05605.12 gi|261403135|ref|YP_003247359.1| - 0.46 10.8 16.8 2.7 8.3 0.1 4.7 3 1 1 4 4 4 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 gi|261403135|ref|YP_003247359.1| - 0.54 10.4 21.8 0.6 10.3 2.5 4.4 3 2 2 5 5 5 0 Zinc ribbon domain CpXC PF14353.6 gi|261403135|ref|YP_003247359.1| - 0.82 9.7 16.1 8.4 6.5 0.1 4.6 1 1 2 3 3 3 0 CpXC protein zinc_ribbon_15 PF17032.5 gi|261403135|ref|YP_003247359.1| - 0.9 10.3 15.3 28 5.6 0.1 3.7 1 1 2 3 3 3 0 zinc-ribbon family C1_1 PF00130.22 gi|261403135|ref|YP_003247359.1| - 1.2 9.1 11.3 3 7.8 0.6 3.4 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PhnA_Zn_Ribbon PF08274.12 gi|261403135|ref|YP_003247359.1| - 1.6 8.7 16.0 0.094 12.7 1.1 4.4 4 0 0 4 4 4 0 PhnA Zinc-Ribbon Anti-TRAP PF15777.5 gi|261403135|ref|YP_003247359.1| - 1.8 8.6 4.2 20 5.3 0.1 3.1 3 0 0 3 3 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-RING_7 PF02591.15 gi|261403135|ref|YP_003247359.1| - 3.2 8.0 10.7 1.2e+02 2.9 0.1 4.9 5 0 0 5 5 4 0 C4-type zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|261403135|ref|YP_003247359.1| - 3.7 7.5 12.0 5 7.1 0.8 3.2 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Rad50_zn_hook PF04423.14 gi|261403135|ref|YP_003247359.1| - 4.9 7.1 9.1 5.1 7.0 0.1 4.6 4 0 0 4 4 4 0 Rad50 zinc hook motif zf-C3HC4_3 PF13920.6 gi|261403135|ref|YP_003247359.1| - 6.2 6.8 18.1 7.8 6.5 0.4 5.0 4 1 1 5 5 5 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.6 gi|261403135|ref|YP_003247359.1| - 8 6.5 25.9 9.7 6.2 0.6 5.6 5 1 0 5 5 5 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|261403135|ref|YP_003247359.1| - 9.5 5.8 25.8 2.9 7.5 4.5 5.2 4 1 1 5 5 5 0 TFIIB zinc-binding ParG PF09274.10 gi|261403136|ref|YP_003247360.1| - 0.0034 17.5 0.1 0.0042 17.2 0.1 1.2 1 0 0 1 1 1 1 ParG RHH_1 PF01402.21 gi|261403136|ref|YP_003247360.1| - 0.0044 16.9 0.0 0.0062 16.4 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Lactamase_B_3 PF13483.6 gi|261403137|ref|YP_003247361.1| - 3.6e-05 23.7 0.0 0.00015 21.7 0.0 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|261403137|ref|YP_003247361.1| - 5.5e-05 22.8 0.1 0.0001 21.9 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|261403137|ref|YP_003247361.1| - 0.003 17.6 1.0 0.0077 16.3 1.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily NLE PF08154.12 gi|261403138|ref|YP_003247362.1| - 0.084 13.4 0.7 0.19 12.3 0.4 1.8 1 1 0 1 1 1 0 NLE (NUC135) domain LpxI_N PF17930.1 gi|261403141|ref|YP_003247365.1| - 0.063 13.2 0.1 0.1 12.5 0.1 1.4 1 1 0 1 1 1 0 LpxI N-terminal domain Ribonuclease_P PF00825.18 gi|261403141|ref|YP_003247365.1| - 0.075 13.1 0.3 0.084 13.0 0.3 1.0 1 0 0 1 1 1 0 Ribonuclease P Pih1_fungal_CS PF18482.1 gi|261403142|ref|YP_003247366.1| - 0.11 13.0 4.8 0.16 12.5 3.4 2.0 1 1 1 2 2 2 0 Fungal Pih1 CS domain DUF5371 PF17341.2 gi|261403142|ref|YP_003247366.1| - 0.92 9.8 4.9 3.8 7.8 0.2 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5371) Antimicrobial15 PF08110.12 gi|261403143|ref|YP_003247367.1| - 0.045 14.0 0.3 0.2 11.9 0.2 2.2 1 1 1 2 2 2 0 Ocellatin family DUF87 PF01935.17 gi|261403144|ref|YP_003247368.1| - 2.5e-07 31.1 0.0 4.7e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain Zot PF05707.12 gi|261403144|ref|YP_003247368.1| - 4.5e-05 23.2 0.1 0.00021 21.0 0.1 1.9 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) ATPase_2 PF01637.18 gi|261403144|ref|YP_003247368.1| - 0.00014 21.9 1.1 0.00018 21.5 1.1 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|261403144|ref|YP_003247368.1| - 0.00045 20.3 0.2 0.05 13.6 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|261403144|ref|YP_003247368.1| - 0.001 18.1 0.1 0.075 11.9 0.1 2.2 2 1 0 2 2 2 1 AAA-like domain AAA PF00004.29 gi|261403144|ref|YP_003247368.1| - 0.012 16.0 0.7 0.019 15.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|261403144|ref|YP_003247368.1| - 0.03 14.1 0.0 0.088 12.5 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|261403144|ref|YP_003247368.1| - 0.037 14.3 0.3 0.47 10.7 0.3 2.2 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|261403144|ref|YP_003247368.1| - 0.042 13.2 0.0 0.53 9.6 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|261403144|ref|YP_003247368.1| - 0.1 11.5 0.0 0.63 8.9 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF134 PF02001.16 gi|261403144|ref|YP_003247368.1| - 0.12 12.9 0.1 0.24 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 Aminotran_3 PF00202.21 gi|261403144|ref|YP_003247368.1| - 0.17 10.5 0.1 0.33 9.6 0.1 1.4 1 0 0 1 1 1 0 Aminotransferase class-III YlmH_RBD PF17774.1 gi|261403147|ref|YP_003247371.1| - 0.046 14.0 0.6 5.9 7.3 0.0 2.5 2 0 0 2 2 2 0 Putative RNA-binding domain in YlmH TMEM119 PF15724.5 gi|261403147|ref|YP_003247371.1| - 0.78 9.8 2.3 1 9.4 2.3 1.1 1 0 0 1 1 1 0 TMEM119 family LMBR1 PF04791.16 gi|261403148|ref|YP_003247372.1| - 0.013 14.4 0.0 0.015 14.3 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Tmemb_14 PF03647.13 gi|261403151|ref|YP_003247375.1| - 0.026 15.3 0.3 0.028 15.1 0.3 1.0 1 0 0 1 1 1 0 Transmembrane proteins 14C Oxidored_q4 PF00507.19 gi|261403151|ref|YP_003247375.1| - 0.038 14.2 0.2 0.04 14.1 0.2 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF5353 PF17304.2 gi|261403151|ref|YP_003247375.1| - 0.068 12.9 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5353) DUF2177 PF09945.9 gi|261403151|ref|YP_003247375.1| - 0.38 10.9 2.5 0.36 10.9 0.2 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2177) CHASE6_C PF17150.4 gi|261403153|ref|YP_003247377.1| - 0.22 12.2 8.0 0.29 11.8 1.4 2.2 1 1 1 2 2 2 0 C-terminal domain of two-partite extracellular sensor domain Syntaxin PF00804.25 gi|261403153|ref|YP_003247377.1| - 0.23 11.1 15.5 0.35 10.5 15.5 1.2 1 0 0 1 1 1 0 Syntaxin YqjK PF13997.6 gi|261403153|ref|YP_003247377.1| - 0.68 10.2 8.7 0.7 10.2 3.5 2.5 2 0 0 2 2 2 0 YqjK-like protein Exonuc_VII_L PF02601.15 gi|261403153|ref|YP_003247377.1| - 2.1 7.8 10.8 3.2 7.2 10.8 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit IZUMO PF15005.6 gi|261403153|ref|YP_003247377.1| - 4.1 7.9 8.9 6 7.4 8.9 1.3 1 0 0 1 1 1 0 Izumo sperm-egg fusion, Ig domain-associated KELK PF15796.5 gi|261403153|ref|YP_003247377.1| - 6.6 7.3 23.3 0.46 11.0 8.6 2.5 1 1 1 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Peptidase_S46 PF10459.9 gi|261403153|ref|YP_003247377.1| - 9.5 4.7 9.6 14 4.2 9.6 1.1 1 0 0 1 1 1 0 Peptidase S46 DUF1229 PF06797.11 gi|261403154|ref|YP_003247378.1| - 0.011 16.0 0.2 0.011 15.9 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1229) EMP24_GP25L PF01105.24 gi|261403154|ref|YP_003247378.1| - 0.095 12.6 0.1 0.12 12.3 0.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD FeoB_associated PF12669.7 gi|261403154|ref|YP_003247378.1| - 1.4 9.4 5.1 2.1 8.8 5.1 1.3 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Thiamine_BP PF01910.17 gi|261403155|ref|YP_003247379.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine-binding protein Spc29 PF17082.5 gi|261403160|ref|YP_003247384.1| - 0.0086 15.9 3.4 0.0086 15.9 3.4 2.1 1 1 0 2 2 2 1 Spindle Pole Component 29 DUF4164 PF13747.6 gi|261403160|ref|YP_003247384.1| - 0.17 12.2 8.2 2.6 8.4 0.3 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4164) DUF1059 PF06348.11 gi|261403160|ref|YP_003247384.1| - 0.26 11.5 1.7 0.68 10.2 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1059) DUF2497 PF10691.9 gi|261403160|ref|YP_003247384.1| - 1.3 9.5 6.7 0.69 10.4 0.4 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF2497) Ish1 PF10281.9 gi|261403160|ref|YP_003247384.1| - 1.5 9.2 11.2 6.9 7.1 0.0 4.3 5 0 0 5 5 5 0 Putative stress-responsive nuclear envelope protein HEPN PF05168.14 gi|261403161|ref|YP_003247385.1| - 1.1e-07 32.0 2.5 2.4e-07 30.9 2.2 1.7 1 1 0 1 1 1 1 HEPN domain Prominin PF05478.11 gi|261403161|ref|YP_003247385.1| - 0.0061 14.6 1.4 0.0078 14.2 1.4 1.0 1 0 0 1 1 1 1 Prominin ICL PF00463.21 gi|261403161|ref|YP_003247385.1| - 0.06 11.8 0.5 0.083 11.4 0.5 1.2 1 0 0 1 1 1 0 Isocitrate lyase family ZT_dimer PF16916.5 gi|261403162|ref|YP_003247386.1| - 0.011 15.8 0.7 4.3 7.5 0.0 2.9 2 1 1 3 3 3 0 Dimerisation domain of Zinc Transporter DNA_topoisoIV PF00521.20 gi|261403162|ref|YP_003247386.1| - 0.034 13.1 0.5 0.043 12.7 0.5 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A LPD29 PF18847.1 gi|261403162|ref|YP_003247386.1| - 0.06 14.3 0.4 0.23 12.4 0.1 2.0 3 0 0 3 3 3 0 Large polyvalent protein associated domain 29 DUF559 PF04480.12 gi|261403163|ref|YP_003247387.1| - 0.031 14.1 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF559) Microtub_bd PF16796.5 gi|261403164|ref|YP_003247388.1| - 0.014 15.4 0.7 0.045 13.7 0.3 1.8 2 0 0 2 2 2 0 Microtubule binding Tctex-1 PF03645.13 gi|261403164|ref|YP_003247388.1| - 0.037 14.3 0.8 0.068 13.4 0.8 1.4 1 1 0 1 1 1 0 Tctex-1 family PRORP PF16953.5 gi|261403166|ref|YP_003247390.1| - 0.073 12.6 0.1 0.23 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein-only RNase P GIT_CC PF16559.5 gi|261403166|ref|YP_003247390.1| - 0.089 12.7 0.8 0.25 11.2 0.1 1.9 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor CdhD PF03599.16 gi|261403168|ref|YP_003247392.1| - 8.9e-94 314.3 4.0 5.2e-89 298.7 0.0 3.6 2 1 1 3 3 3 2 CO dehydrogenase/acetyl-CoA synthase delta subunit Pterin_bind PF00809.22 gi|261403168|ref|YP_003247392.1| - 0.046 13.4 0.0 7.7 6.1 0.0 2.3 1 1 1 2 2 2 0 Pterin binding enzyme HSP70 PF00012.20 gi|261403168|ref|YP_003247392.1| - 0.054 11.7 0.0 0.081 11.1 0.0 1.1 1 0 0 1 1 1 0 Hsp70 protein CdhD PF03599.16 gi|261403169|ref|YP_003247393.1| - 1.4e-157 524.4 0.2 1.7e-157 524.1 0.2 1.1 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit FeS PF04060.13 gi|261403169|ref|YP_003247393.1| - 5.1e-17 61.2 2.8 1.7e-16 59.6 2.1 2.3 3 0 0 3 3 3 1 Putative Fe-S cluster SMC_ScpA PF02616.14 gi|261403170|ref|YP_003247394.1| - 8.8e-14 52.0 10.3 2.8e-10 40.5 10.3 2.2 1 1 0 1 1 1 1 Segregation and condensation protein ScpA AAA_11 PF13086.6 gi|261403170|ref|YP_003247394.1| - 0.13 12.0 5.3 0.16 11.7 5.3 1.1 1 0 0 1 1 1 0 AAA domain LCIB_C_CA PF18599.1 gi|261403170|ref|YP_003247394.1| - 0.26 10.5 5.1 0.37 10.0 4.1 1.7 1 1 1 2 2 2 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases SLATT_fungal PF18142.1 gi|261403170|ref|YP_003247394.1| - 0.29 11.1 1.2 0.56 10.2 1.2 1.6 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain HHH_9 PF17674.1 gi|261403170|ref|YP_003247394.1| - 0.35 11.8 4.3 0.22 12.4 1.9 2.0 2 0 0 2 2 2 0 HHH domain DUF87 PF01935.17 gi|261403170|ref|YP_003247394.1| - 0.66 10.0 10.9 1.5 8.9 9.7 1.9 1 1 1 2 2 2 0 Helicase HerA, central domain Peptidase_C37 PF05416.12 gi|261403170|ref|YP_003247394.1| - 0.67 8.4 10.7 0.8 8.2 10.7 1.1 1 0 0 1 1 1 0 Southampton virus-type processing peptidase LMBR1 PF04791.16 gi|261403170|ref|YP_003247394.1| - 4.3 6.1 4.6 5.7 5.7 4.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein MoaC PF01967.21 gi|261403171|ref|YP_003247395.1| - 2.4e-50 170.2 1.9 2.9e-50 169.9 1.9 1.0 1 0 0 1 1 1 1 MoaC family UK PF02512.14 gi|261403171|ref|YP_003247395.1| - 0.014 15.9 0.2 0.029 14.9 0.2 1.5 1 1 0 1 1 1 0 Virulence determinant GrpE PF01025.19 gi|261403172|ref|YP_003247396.1| - 0.0024 17.6 4.5 0.0028 17.3 4.5 1.0 1 0 0 1 1 1 1 GrpE Ax_dynein_light PF10211.9 gi|261403172|ref|YP_003247396.1| - 0.017 15.1 6.1 0.018 15.0 6.1 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain MbeB_N PF04837.12 gi|261403172|ref|YP_003247396.1| - 0.064 13.6 1.4 0.13 12.6 1.4 1.6 1 1 0 1 1 1 0 MbeB-like, N-term conserved region Noelin-1 PF12308.8 gi|261403172|ref|YP_003247396.1| - 0.15 12.0 2.2 0.21 11.6 1.6 1.5 1 1 1 2 2 2 0 Neurogenesis glycoprotein DUF16 PF01519.16 gi|261403172|ref|YP_003247396.1| - 0.53 10.8 6.5 0.81 10.2 6.5 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 COG5 PF10392.9 gi|261403172|ref|YP_003247396.1| - 0.61 10.3 5.5 1 9.5 5.5 1.4 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Paralemmin PF03285.15 gi|261403172|ref|YP_003247396.1| - 0.66 9.5 5.8 0.69 9.4 5.8 1.0 1 0 0 1 1 1 0 Paralemmin DUF724 PF05266.14 gi|261403172|ref|YP_003247396.1| - 0.74 9.6 6.0 0.96 9.2 6.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF2205 PF10224.9 gi|261403172|ref|YP_003247396.1| - 0.96 9.5 6.8 1.4 9.0 6.8 1.3 1 0 0 1 1 1 0 Short coiled-coil protein PspB PF06667.12 gi|261403172|ref|YP_003247396.1| - 4.5 7.4 9.2 0.35 11.0 1.2 2.4 2 1 0 2 2 2 0 Phage shock protein B Arginosuc_synth PF00764.19 gi|261403173|ref|YP_003247397.1| - 3.9e-187 622.3 0.4 4.5e-187 622.1 0.4 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|261403173|ref|YP_003247397.1| - 3.5e-05 23.4 0.1 9.2e-05 22.0 0.1 1.7 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Peptidase_S49 PF01343.18 gi|261403174|ref|YP_003247398.1| - 1.3e-58 197.3 0.6 1.7e-58 196.9 0.6 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|261403174|ref|YP_003247398.1| - 7.1e-06 26.0 0.0 0.0049 16.8 0.0 2.3 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.16 gi|261403174|ref|YP_003247398.1| - 0.0009 18.3 0.1 0.0013 17.8 0.1 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Succ_CoA_lig PF13607.6 gi|261403174|ref|YP_003247398.1| - 0.044 13.6 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain Aminotran_MocR PF12897.7 gi|261403174|ref|YP_003247398.1| - 0.068 11.9 0.0 0.8 8.4 0.0 2.1 2 0 0 2 2 2 0 Alanine-glyoxylate amino-transferase ECH_1 PF00378.20 gi|261403174|ref|YP_003247398.1| - 0.17 11.1 0.3 0.54 9.5 0.0 1.9 2 1 0 2 2 2 0 Enoyl-CoA hydratase/isomerase CRS1_YhbY PF01985.21 gi|261403175|ref|YP_003247399.1| - 2.9e-17 62.6 1.1 4.8e-17 61.9 1.1 1.4 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Toprim PF01751.22 gi|261403175|ref|YP_003247399.1| - 0.0074 16.5 1.2 0.03 14.5 0.2 2.0 1 1 1 2 2 2 1 Toprim domain RQC PF09382.10 gi|261403175|ref|YP_003247399.1| - 0.019 14.7 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 RQC domain UPF0154 PF03672.13 gi|261403175|ref|YP_003247399.1| - 0.16 12.0 0.6 0.87 9.7 0.0 2.3 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0154) DEAD_assoc PF08494.11 gi|261403176|ref|YP_003247400.1| - 1.8e-48 164.9 0.0 2.9e-48 164.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|261403176|ref|YP_003247400.1| - 4.1e-28 98.3 0.2 1.3e-27 96.7 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|261403176|ref|YP_003247400.1| - 3.4e-19 69.2 3.1 1.7e-18 67.0 0.1 3.3 3 1 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|261403176|ref|YP_003247400.1| - 3.4e-11 43.4 1.0 1.3e-10 41.6 0.0 2.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|261403176|ref|YP_003247400.1| - 0.00075 19.8 0.4 0.21 11.9 0.0 2.9 2 1 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|261403176|ref|YP_003247400.1| - 0.0061 15.3 0.2 0.013 14.2 0.2 1.6 1 1 0 1 1 1 1 SNF2 family N-terminal domain PhoH PF02562.16 gi|261403176|ref|YP_003247400.1| - 0.01 15.3 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.6 gi|261403176|ref|YP_003247400.1| - 0.076 13.3 1.6 0.44 10.8 0.4 2.9 3 1 0 3 3 3 0 AAA domain HEM4 PF02602.15 gi|261403176|ref|YP_003247400.1| - 0.12 11.6 0.0 1.3 8.3 0.0 2.5 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD FdhD-NarQ PF02634.15 gi|261403177|ref|YP_003247401.1| - 3.9e-49 167.5 0.0 1e-41 143.2 0.0 2.0 1 1 1 2 2 2 2 FdhD/NarQ family Lactamase_B PF00753.27 gi|261403178|ref|YP_003247402.1| - 1.3e-16 61.2 0.0 3e-12 47.0 0.1 2.1 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|261403178|ref|YP_003247402.1| - 2.5e-05 24.2 0.1 3.5e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|261403178|ref|YP_003247402.1| - 7.9e-05 22.3 0.0 9.8e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF507 PF04368.13 gi|261403178|ref|YP_003247402.1| - 0.24 11.3 1.9 0.88 9.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF507) Thioredoxin_3 PF13192.6 gi|261403179|ref|YP_003247403.1| - 3.9e-20 71.7 0.1 4.8e-20 71.4 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin domain PTS_IIB PF02302.17 gi|261403179|ref|YP_003247403.1| - 0.0015 19.2 0.1 0.0019 18.9 0.1 1.1 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit Glutaredoxin PF00462.24 gi|261403179|ref|YP_003247403.1| - 0.016 15.4 2.1 0.054 13.7 1.0 2.2 2 1 0 2 2 2 0 Glutaredoxin DUF836 PF05768.14 gi|261403179|ref|YP_003247403.1| - 0.016 15.6 0.2 0.02 15.3 0.2 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) TFA2_Winged_2 PF18121.1 gi|261403179|ref|YP_003247403.1| - 0.02 14.6 0.9 0.98 9.2 0.1 2.3 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 Thioredoxin_8 PF13905.6 gi|261403179|ref|YP_003247403.1| - 0.1 13.0 0.0 0.12 12.7 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like DUF953 PF06110.11 gi|261403179|ref|YP_003247403.1| - 0.12 12.0 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) zf-C4_Topoisom PF01396.19 gi|261403180|ref|YP_003247404.1| - 0.00012 21.8 2.2 0.21 11.4 0.1 2.3 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.12 gi|261403180|ref|YP_003247404.1| - 0.00031 20.7 0.9 0.51 10.4 0.1 2.4 2 0 0 2 2 2 2 Ogr/Delta-like zinc finger YhfH PF14149.6 gi|261403180|ref|YP_003247404.1| - 0.0012 18.8 0.9 0.92 9.5 0.1 2.2 2 0 0 2 2 2 2 YhfH-like protein zf-ribbon_3 PF13248.6 gi|261403180|ref|YP_003247404.1| - 0.0013 18.1 6.1 0.37 10.3 0.1 2.3 2 1 0 2 2 2 2 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|261403180|ref|YP_003247404.1| - 0.0013 19.2 4.5 0.21 12.1 0.3 2.1 2 0 0 2 2 2 2 Recombinase zinc beta ribbon domain zf-NADH-PPase PF09297.11 gi|261403180|ref|YP_003247404.1| - 0.0028 17.3 1.8 0.23 11.2 0.2 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|261403180|ref|YP_003247404.1| - 0.0041 16.7 1.9 0.84 9.3 0.2 2.3 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger TerY_C PF15616.6 gi|261403180|ref|YP_003247404.1| - 0.006 16.7 1.2 0.0067 16.5 1.2 1.1 1 0 0 1 1 1 1 TerY-C metal binding domain Nudix_N_2 PF14803.6 gi|261403180|ref|YP_003247404.1| - 0.011 15.7 2.2 2 8.4 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|261403180|ref|YP_003247404.1| - 0.015 15.0 5.9 0.75 9.6 0.3 2.4 3 0 0 3 3 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|261403180|ref|YP_003247404.1| - 0.021 14.7 2.4 0.94 9.4 0.5 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG Zn_Tnp_IS1595 PF12760.7 gi|261403180|ref|YP_003247404.1| - 0.029 14.4 8.1 0.45 10.5 1.4 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.13 gi|261403180|ref|YP_003247404.1| - 0.037 14.0 3.3 0.23 11.4 0.7 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type CpXC PF14353.6 gi|261403180|ref|YP_003247404.1| - 0.039 14.0 2.8 2.2 8.4 0.3 2.1 1 1 1 2 2 2 0 CpXC protein YdjO PF14169.6 gi|261403180|ref|YP_003247404.1| - 0.04 13.7 5.8 0.15 11.8 0.2 2.2 1 1 0 2 2 2 0 Cold-inducible protein YdjO DZR PF12773.7 gi|261403180|ref|YP_003247404.1| - 0.046 13.8 5.4 0.16 12.0 5.4 1.8 1 1 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.18 gi|261403180|ref|YP_003247404.1| - 0.048 13.5 1.4 3.9 7.4 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.12 gi|261403180|ref|YP_003247404.1| - 0.055 13.5 5.5 0.089 12.8 5.2 1.6 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|261403180|ref|YP_003247404.1| - 0.07 13.3 8.2 1.9 8.7 8.2 2.3 1 1 0 1 1 1 0 Zinc ribbon domain ribosomal_L24 PF17136.4 gi|261403180|ref|YP_003247404.1| - 0.094 13.1 0.8 2.4 8.6 0.8 2.0 1 1 0 1 1 1 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 zf-ISL3 PF14690.6 gi|261403180|ref|YP_003247404.1| - 0.1 13.3 8.9 0.3 11.8 0.2 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1451 PF07295.11 gi|261403180|ref|YP_003247404.1| - 0.13 12.3 4.1 0.34 10.9 4.1 1.6 1 1 0 1 1 1 0 Zinc-ribbon containing domain PDCD2_C PF04194.13 gi|261403180|ref|YP_003247404.1| - 0.18 11.9 3.2 3.3 7.7 0.4 2.0 1 1 1 2 2 2 0 Programmed cell death protein 2, C-terminal putative domain HypA PF01155.19 gi|261403180|ref|YP_003247404.1| - 0.19 11.7 4.4 0.46 10.5 4.4 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|261403180|ref|YP_003247404.1| - 0.2 11.2 8.4 1.4 8.5 0.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|261403180|ref|YP_003247404.1| - 0.22 11.6 5.6 0.99 9.5 0.1 2.5 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain PolC_DP2 PF03833.13 gi|261403180|ref|YP_003247404.1| - 0.24 9.2 0.8 0.22 9.3 0.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.11 gi|261403180|ref|YP_003247404.1| - 0.25 11.3 4.5 0.57 10.1 4.0 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|261403180|ref|YP_003247404.1| - 0.28 11.7 2.5 17 6.1 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF1610 PF07754.11 gi|261403180|ref|YP_003247404.1| - 0.34 10.9 10.6 0.75 9.8 0.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-TFIIB PF13453.6 gi|261403180|ref|YP_003247404.1| - 0.4 10.1 9.1 0.78 9.1 9.1 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|261403180|ref|YP_003247404.1| - 0.43 11.0 5.3 1.9 8.9 0.1 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_9 PF14369.6 gi|261403180|ref|YP_003247404.1| - 0.65 10.3 6.3 8.7 6.7 2.9 2.3 2 1 0 2 2 2 0 zinc-ribbon DUF35_N PF12172.8 gi|261403180|ref|YP_003247404.1| - 0.85 9.6 6.6 1.8 8.5 1.2 2.2 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.12 gi|261403180|ref|YP_003247404.1| - 1 9.4 10.5 2.2 8.3 0.1 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_4 PF13894.6 gi|261403180|ref|YP_003247404.1| - 1.7 9.7 4.9 32 5.7 0.1 2.4 2 1 0 2 2 2 0 C2H2-type zinc finger zf-IS66 PF13005.7 gi|261403180|ref|YP_003247404.1| - 2.3 8.7 10.4 3.6 8.1 0.4 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 NRDD PF13597.6 gi|261403180|ref|YP_003247404.1| - 6.2 5.5 5.4 11 4.6 5.4 1.5 1 1 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase ArsP_1 PF03773.13 gi|261403181|ref|YP_003247405.1| - 2.4e-93 312.5 26.2 3.2e-93 312.1 26.2 1.2 1 0 0 1 1 1 1 Predicted permease HTH_24 PF13412.6 gi|261403182|ref|YP_003247406.1| - 1e-14 53.8 0.1 2.7e-14 52.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|261403182|ref|YP_003247406.1| - 8.8e-09 35.1 0.0 1.8e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|261403182|ref|YP_003247406.1| - 1.6e-07 31.1 0.0 3.3e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|261403182|ref|YP_003247406.1| - 3.1e-06 27.0 0.0 7e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|261403182|ref|YP_003247406.1| - 6.1e-06 26.1 0.0 1.4e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|261403182|ref|YP_003247406.1| - 1.6e-05 24.7 0.2 4.8e-05 23.1 0.1 1.9 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|261403182|ref|YP_003247406.1| - 1.9e-05 25.1 0.0 6.3e-05 23.4 0.0 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|261403182|ref|YP_003247406.1| - 3.6e-05 23.7 0.1 0.00011 22.1 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix Fe_dep_repress PF01325.19 gi|261403182|ref|YP_003247406.1| - 0.00011 22.3 0.0 0.00038 20.6 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|261403182|ref|YP_003247406.1| - 0.00024 20.9 0.0 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|261403182|ref|YP_003247406.1| - 0.00063 19.8 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|261403182|ref|YP_003247406.1| - 0.00064 20.0 0.2 0.0022 18.3 0.1 2.0 2 0 0 2 2 1 1 Transcriptional regulator TrmB PF01978.19 gi|261403182|ref|YP_003247406.1| - 0.00091 19.1 0.6 0.0025 17.7 0.2 2.0 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|261403182|ref|YP_003247406.1| - 0.0019 17.8 0.1 0.0036 16.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LacI PF00356.21 gi|261403182|ref|YP_003247406.1| - 0.0021 17.8 0.2 0.21 11.4 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_40 PF14493.6 gi|261403182|ref|YP_003247406.1| - 0.0023 18.3 0.0 0.0082 16.6 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|261403182|ref|YP_003247406.1| - 0.0036 17.3 0.0 0.01 15.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_IclR PF09339.10 gi|261403182|ref|YP_003247406.1| - 0.0046 16.7 0.0 0.008 16.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|261403182|ref|YP_003247406.1| - 0.0056 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Mrr_N PF14338.6 gi|261403182|ref|YP_003247406.1| - 0.0061 16.7 0.2 0.026 14.6 0.1 2.0 1 1 1 2 2 2 1 Mrr N-terminal domain Lgl_C PF08596.10 gi|261403182|ref|YP_003247406.1| - 0.0087 14.8 0.2 0.012 14.3 0.2 1.1 1 0 0 1 1 1 1 Lethal giant larvae(Lgl) like, C-terminal HTH_34 PF13601.6 gi|261403182|ref|YP_003247406.1| - 0.012 15.7 0.0 0.044 14.0 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|261403182|ref|YP_003247406.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|261403182|ref|YP_003247406.1| - 0.017 14.7 0.7 0.034 13.8 0.2 1.8 2 0 0 2 2 1 0 Segregation and condensation complex subunit ScpB HTH_12 PF08461.10 gi|261403182|ref|YP_003247406.1| - 0.021 14.8 0.2 0.058 13.4 0.2 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain RRM_3 PF08777.11 gi|261403182|ref|YP_003247406.1| - 0.023 14.7 0.1 0.066 13.3 0.1 1.8 1 1 0 1 1 1 0 RNA binding motif KORA PF16509.5 gi|261403182|ref|YP_003247406.1| - 0.031 14.6 0.1 0.086 13.1 0.1 1.8 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_Mga PF08280.11 gi|261403182|ref|YP_003247406.1| - 0.032 14.3 0.0 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain SHMT PF00464.19 gi|261403182|ref|YP_003247406.1| - 0.048 12.3 0.1 0.26 9.8 0.0 2.0 2 1 0 2 2 2 0 Serine hydroxymethyltransferase HTH_AsnC-type PF13404.6 gi|261403182|ref|YP_003247406.1| - 0.053 13.4 0.8 0.13 12.1 0.0 2.0 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain Topoisom_bac PF01131.20 gi|261403182|ref|YP_003247406.1| - 0.054 12.5 1.2 0.094 11.7 0.0 1.8 2 0 0 2 2 2 0 DNA topoisomerase Mnd1 PF03962.15 gi|261403182|ref|YP_003247406.1| - 0.055 13.8 0.1 0.3 11.4 0.0 2.4 2 0 0 2 2 1 0 Mnd1 HTH domain YdaS_antitoxin PF15943.5 gi|261403182|ref|YP_003247406.1| - 0.064 13.1 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT GerE PF00196.19 gi|261403182|ref|YP_003247406.1| - 0.069 12.7 0.1 0.17 11.4 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|261403182|ref|YP_003247406.1| - 0.076 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|261403182|ref|YP_003247406.1| - 0.091 12.3 0.4 0.43 10.1 0.0 2.2 3 0 0 3 3 2 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|261403182|ref|YP_003247406.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|261403182|ref|YP_003247406.1| - 0.13 12.1 0.2 0.42 10.5 0.0 1.9 2 0 0 2 2 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|261403182|ref|YP_003247406.1| - 0.13 12.0 0.0 0.36 10.6 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain SurE PF01975.17 gi|261403183|ref|YP_003247407.1| - 1.6e-53 181.4 0.0 2e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Adenylsucc_synt PF00709.21 gi|261403184|ref|YP_003247408.1| - 1.1e-90 304.6 4.8 2.9e-45 155.0 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Peptidase_M50 PF02163.22 gi|261403185|ref|YP_003247409.1| - 8.6e-24 84.2 2.7 5.4e-23 81.5 2.7 2.1 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|261403185|ref|YP_003247409.1| - 0.00017 21.8 0.0 0.00032 21.0 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|261403185|ref|YP_003247409.1| - 0.0013 19.1 0.0 0.0031 17.8 0.0 1.6 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|261403185|ref|YP_003247409.1| - 0.0079 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ_1 PF12812.7 gi|261403185|ref|YP_003247409.1| - 0.014 15.4 0.0 0.044 13.8 0.0 1.8 2 0 0 2 2 2 0 PDZ-like domain DUF2701 PF10857.8 gi|261403185|ref|YP_003247409.1| - 4.6 7.4 8.4 3.2 7.9 0.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2701) AIRS_C PF02769.22 gi|261403186|ref|YP_003247410.1| - 6.5e-35 120.6 0.8 1e-34 119.9 0.8 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|261403186|ref|YP_003247410.1| - 4.1e-19 69.0 0.2 8.3e-19 68.0 0.2 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PCI PF01399.27 gi|261403187|ref|YP_003247411.1| - 2.8e-05 24.6 0.2 4.2e-05 24.0 0.2 1.4 1 0 0 1 1 1 1 PCI domain HTH_24 PF13412.6 gi|261403187|ref|YP_003247411.1| - 3.2e-05 23.4 1.2 5.5e-05 22.6 1.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Mga PF08280.11 gi|261403187|ref|YP_003247411.1| - 0.00021 21.2 1.9 0.00051 20.0 1.9 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain DUF977 PF06163.11 gi|261403187|ref|YP_003247411.1| - 0.00099 19.1 0.0 0.0035 17.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF977) HTH_DeoR PF08220.12 gi|261403187|ref|YP_003247411.1| - 0.0018 18.0 0.1 0.0039 16.9 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|261403187|ref|YP_003247411.1| - 0.0035 17.2 1.3 0.0035 17.2 1.3 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_11 PF08279.12 gi|261403187|ref|YP_003247411.1| - 0.004 17.1 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain Sigma70_r1_1 PF03979.14 gi|261403187|ref|YP_003247411.1| - 0.0078 16.2 4.3 0.028 14.5 0.9 2.3 2 0 0 2 2 2 1 Sigma-70 factor, region 1.1 Dcc1 PF09724.9 gi|261403187|ref|YP_003247411.1| - 0.013 14.8 0.1 0.015 14.6 0.1 1.1 1 0 0 1 1 1 0 Sister chromatid cohesion protein Dcc1 HTH_AsnC-type PF13404.6 gi|261403187|ref|YP_003247411.1| - 0.025 14.4 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ThiS PF02597.20 gi|261403187|ref|YP_003247411.1| - 0.033 14.8 1.1 1.9 9.2 0.1 2.6 2 1 0 2 2 2 0 ThiS family Cytochrom_C550 PF14495.6 gi|261403187|ref|YP_003247411.1| - 0.053 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Cytochrome c-550 domain tRNA_anti-codon PF01336.25 gi|261403187|ref|YP_003247411.1| - 0.055 13.5 1.7 0.38 10.8 1.6 2.3 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Rep_fac-A_3 PF08661.11 gi|261403187|ref|YP_003247411.1| - 0.098 13.0 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 Pribosyltran PF00156.27 gi|261403188|ref|YP_003247412.1| - 3.9e-18 65.5 0.7 4.9e-18 65.1 0.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|261403188|ref|YP_003247412.1| - 1.3e-05 24.8 0.1 2e-05 24.1 0.0 1.4 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|261403188|ref|YP_003247412.1| - 0.00025 20.6 0.1 0.00034 20.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase Adenine_deam_C PF13382.6 gi|261403189|ref|YP_003247413.1| - 9.1e-49 165.0 0.1 1.1e-47 161.5 0.0 2.2 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|261403189|ref|YP_003247413.1| - 3e-31 109.0 0.4 4.8e-30 105.0 0.4 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|261403189|ref|YP_003247413.1| - 5.9e-07 29.3 0.0 0.0041 16.6 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Arc_PepC PF06819.11 gi|261403189|ref|YP_003247413.1| - 0.48 10.6 8.1 2.7 8.1 0.3 3.7 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain UbiA PF01040.18 gi|261403190|ref|YP_003247414.1| - 5e-45 153.8 9.7 6.4e-45 153.4 9.7 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2207 PF09972.9 gi|261403190|ref|YP_003247414.1| - 1.5 7.5 22.1 0.6 8.8 7.6 2.6 1 1 0 2 2 2 0 Predicted membrane protein (DUF2207) NAC PF01849.18 gi|261403191|ref|YP_003247415.1| - 4e-13 49.1 7.2 3.1e-12 46.3 1.8 2.2 2 0 0 2 2 2 2 NAC domain CUE PF02845.16 gi|261403191|ref|YP_003247415.1| - 0.012 15.3 1.3 0.014 15.1 0.1 1.7 2 0 0 2 2 2 0 CUE domain UBA_4 PF14555.6 gi|261403191|ref|YP_003247415.1| - 0.016 15.0 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 UBA-like domain Arcadin_1 PF18653.1 gi|261403191|ref|YP_003247415.1| - 0.027 14.5 0.2 0.027 14.5 0.2 2.1 2 0 0 2 2 2 0 Arcadin 1 DUF4373 PF14297.6 gi|261403191|ref|YP_003247415.1| - 0.027 15.2 2.8 2.1 9.2 0.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4373) DMA PF03474.14 gi|261403191|ref|YP_003247415.1| - 0.032 13.8 0.1 0.071 12.7 0.1 1.7 1 1 0 1 1 1 0 DMRTA motif PRESAN PF09687.10 gi|261403191|ref|YP_003247415.1| - 0.036 14.6 0.1 0.036 14.6 0.1 2.4 2 1 1 3 3 3 0 Plasmodium RESA N-terminal DUF2452 PF10504.9 gi|261403191|ref|YP_003247415.1| - 0.048 13.1 0.7 0.069 12.6 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) NAD_synthase PF02540.17 gi|261403192|ref|YP_003247416.1| - 3.1e-101 337.5 0.1 3.5e-101 337.4 0.1 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|261403192|ref|YP_003247416.1| - 1.4e-11 43.9 0.0 3.7e-05 22.7 0.0 2.6 3 0 0 3 3 3 2 tRNA methyl transferase QueC PF06508.13 gi|261403192|ref|YP_003247416.1| - 0.0028 17.2 0.1 0.017 14.6 0.0 2.2 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|261403192|ref|YP_003247416.1| - 0.047 13.4 0.0 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase HTH_23 PF13384.6 gi|261403192|ref|YP_003247416.1| - 0.052 13.3 0.0 0.63 9.9 0.0 2.7 3 1 1 4 4 4 0 Homeodomain-like domain DUF1699 PF08004.11 gi|261403192|ref|YP_003247416.1| - 0.11 12.1 0.4 0.74 9.5 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1699) DUF364 PF04016.12 gi|261403193|ref|YP_003247417.1| - 2.1e-12 46.9 0.0 3.4e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation PS_pyruv_trans PF04230.13 gi|261403193|ref|YP_003247417.1| - 0.012 15.6 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase CdhD PF03599.16 gi|261403193|ref|YP_003247417.1| - 0.045 12.5 0.0 2.8 6.6 0.0 2.1 1 1 1 2 2 2 0 CO dehydrogenase/acetyl-CoA synthase delta subunit BPD_transp_1 PF00528.22 gi|261403194|ref|YP_003247418.1| - 1.6e-21 76.9 15.6 1.6e-21 76.9 15.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3796 PF12676.7 gi|261403194|ref|YP_003247418.1| - 2.5 8.5 10.3 0.89 10.0 1.5 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3796) SBP_bac_11 PF13531.6 gi|261403195|ref|YP_003247419.1| - 4e-43 147.8 0.0 4.6e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|261403195|ref|YP_003247419.1| - 1.2e-15 58.3 1.9 1.2e-07 32.0 0.5 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|261403195|ref|YP_003247419.1| - 9.1e-06 25.4 0.0 1.5e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_8 PF13416.6 gi|261403195|ref|YP_003247419.1| - 8.6e-05 22.5 0.2 0.047 13.5 0.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|261403195|ref|YP_003247419.1| - 0.084 12.0 0.1 0.16 11.1 0.1 1.5 1 1 0 1 1 1 0 PBP superfamily domain Lactamase_B PF00753.27 gi|261403196|ref|YP_003247420.1| - 2.4e-19 70.1 0.0 5.2e-19 69.0 0.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|261403196|ref|YP_003247420.1| - 0.0029 17.1 0.0 0.0036 16.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Fer4_NifH PF00142.18 gi|261403197|ref|YP_003247421.1| - 2.2e-122 407.7 1.2 2.5e-122 407.6 1.2 1.0 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CbiA PF01656.23 gi|261403197|ref|YP_003247421.1| - 2.3e-09 37.4 0.0 3.9e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|261403197|ref|YP_003247421.1| - 2e-05 24.2 1.2 0.00035 20.1 1.2 2.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|261403197|ref|YP_003247421.1| - 4.3e-05 23.5 0.1 8.1e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|261403197|ref|YP_003247421.1| - 0.02 14.6 0.5 0.032 13.9 0.5 1.3 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|261403197|ref|YP_003247421.1| - 0.033 13.4 0.1 0.1 11.8 0.1 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|261403197|ref|YP_003247421.1| - 0.075 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|261403197|ref|YP_003247421.1| - 0.11 12.4 0.3 3.6 7.5 0.1 2.3 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|261403197|ref|YP_003247421.1| - 0.12 12.8 0.0 0.3 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Sun2_CC2 PF18580.1 gi|261403197|ref|YP_003247421.1| - 0.16 12.2 0.3 0.35 11.1 0.3 1.5 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 P-II PF00543.22 gi|261403198|ref|YP_003247422.1| - 5.9e-32 110.3 0.5 6.6e-32 110.1 0.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II CdAMP_rec PF06153.11 gi|261403198|ref|YP_003247422.1| - 4.3e-07 30.1 0.2 1.5e-06 28.4 0.2 1.9 1 1 0 1 1 1 1 Cyclic-di-AMP receptor P-II PF00543.22 gi|261403199|ref|YP_003247423.1| - 5.7e-31 107.1 0.6 8.5e-31 106.6 0.6 1.3 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Oxidored_nitro PF00148.19 gi|261403200|ref|YP_003247424.1| - 4.8e-126 420.7 0.0 5.5e-126 420.5 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase Methyltr_RsmB-F PF01189.17 gi|261403200|ref|YP_003247424.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Oxidored_nitro PF00148.19 gi|261403201|ref|YP_003247425.1| - 1.2e-128 429.2 0.0 1.4e-128 429.1 0.0 1.0 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase PTS_IIB PF02302.17 gi|261403201|ref|YP_003247425.1| - 0.0024 18.5 0.2 0.065 13.9 0.0 2.9 2 1 1 3 3 3 1 PTS system, Lactose/Cellobiose specific IIB subunit UvrA_DNA-bind PF17755.1 gi|261403201|ref|YP_003247425.1| - 0.05 14.0 0.0 0.099 13.0 0.0 1.5 1 0 0 1 1 1 0 UvrA DNA-binding domain GatB_Yqey PF02637.18 gi|261403202|ref|YP_003247426.1| - 0.07 13.0 0.2 0.087 12.7 0.2 1.2 1 0 0 1 1 1 0 GatB domain DUF3801 PF12687.7 gi|261403202|ref|YP_003247426.1| - 0.16 12.0 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) HupF_HypC PF01455.18 gi|261403203|ref|YP_003247427.1| - 0.022 14.9 0.1 0.031 14.4 0.1 1.3 1 0 0 1 1 1 0 HupF/HypC family AAA_18 PF13238.6 gi|261403204|ref|YP_003247428.1| - 8.7e-05 23.1 1.2 0.00027 21.5 0.3 2.2 1 1 1 2 2 2 1 AAA domain FlbT PF07378.11 gi|261403204|ref|YP_003247428.1| - 0.015 15.4 0.3 0.029 14.5 0.3 1.5 1 0 0 1 1 1 0 Flagellar protein FlbT CoaE PF01121.20 gi|261403204|ref|YP_003247428.1| - 0.017 14.8 0.0 0.84 9.3 0.0 2.4 2 1 0 2 2 2 0 Dephospho-CoA kinase AAA_22 PF13401.6 gi|261403204|ref|YP_003247428.1| - 0.019 15.3 0.1 0.026 14.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|261403204|ref|YP_003247428.1| - 0.067 12.9 0.3 0.24 11.1 0.1 1.9 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|261403204|ref|YP_003247428.1| - 0.079 13.5 1.0 0.28 11.7 0.1 2.0 2 0 0 2 2 2 0 ABC transporter TsaE PF02367.17 gi|261403204|ref|YP_003247428.1| - 0.16 12.0 1.1 3 7.8 1.1 2.3 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 gi|261403204|ref|YP_003247428.1| - 0.2 12.1 2.7 0.52 10.7 1.1 2.4 1 1 1 2 2 2 0 AAA domain Fib_alpha PF08702.10 gi|261403204|ref|YP_003247428.1| - 0.92 9.7 5.8 0.21 11.8 1.8 2.0 3 0 0 3 3 3 0 Fibrinogen alpha/beta chain family Rhodanese PF00581.20 gi|261403205|ref|YP_003247429.1| - 2.1e-17 63.6 0.2 5.9e-17 62.1 0.2 1.8 1 1 0 1 1 1 1 Rhodanese-like domain PTH2 PF01981.16 gi|261403206|ref|YP_003247430.1| - 4e-44 149.7 0.1 4.4e-44 149.5 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Pyridoxal_deC PF00282.19 gi|261403207|ref|YP_003247431.1| - 1.2e-28 100.0 0.0 1.6e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_1_2 PF00155.21 gi|261403207|ref|YP_003247431.1| - 2.8e-07 30.0 0.1 0.0038 16.4 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|261403207|ref|YP_003247431.1| - 7.8e-06 25.1 0.0 1.8e-05 23.9 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|261403207|ref|YP_003247431.1| - 1.8e-05 24.2 0.0 3.2e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Phage_Gp15 PF06854.11 gi|261403207|ref|YP_003247431.1| - 0.0038 17.2 0.0 0.0091 16.0 0.0 1.6 1 0 0 1 1 1 1 Bacteriophage Gp15 protein Aminotran_3 PF00202.21 gi|261403207|ref|YP_003247431.1| - 0.037 12.7 0.3 0.42 9.2 0.0 2.3 3 0 0 3 3 3 0 Aminotransferase class-III NAPRTase_N PF17767.1 gi|261403208|ref|YP_003247432.1| - 0.016 15.6 0.3 0.016 15.6 0.3 1.1 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GPS2_interact PF15784.5 gi|261403208|ref|YP_003247432.1| - 0.58 10.6 6.5 7.3 7.1 6.5 2.0 1 1 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain Ribosomal_L31e PF01198.19 gi|261403209|ref|YP_003247433.1| - 4.4e-18 65.3 1.9 5.2e-18 65.1 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|261403210|ref|YP_003247434.1| - 4.3e-62 209.0 0.9 5.1e-62 208.8 0.9 1.0 1 0 0 1 1 1 1 eIF-6 family PAP2 PF01569.21 gi|261403211|ref|YP_003247435.1| - 8.3e-27 93.6 8.5 2.2e-26 92.2 8.5 1.7 1 0 0 1 1 1 1 PAP2 superfamily SNARE_assoc PF09335.11 gi|261403211|ref|YP_003247435.1| - 1.7e-19 70.4 7.9 1.7e-19 70.4 7.9 3.7 4 1 0 4 4 4 1 SNARE associated Golgi protein PAP2_3 PF14378.6 gi|261403211|ref|YP_003247435.1| - 8e-12 45.2 14.0 3.9e-11 43.0 14.0 2.0 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|261403211|ref|YP_003247435.1| - 0.00025 21.5 3.7 0.00025 21.5 3.7 3.0 2 1 1 3 3 3 1 PAP2 superfamily C-terminal Pam17 PF08566.10 gi|261403211|ref|YP_003247435.1| - 0.038 13.8 1.1 0.59 10.0 0.2 2.3 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 DUF212 PF02681.14 gi|261403211|ref|YP_003247435.1| - 0.055 13.6 1.6 4.5 7.4 0.2 2.5 1 1 1 2 2 2 0 Divergent PAP2 family Flavoprotein PF02441.19 gi|261403212|ref|YP_003247436.1| - 4.8e-25 88.1 0.1 1.1e-23 83.7 0.1 2.1 1 1 0 1 1 1 1 Flavoprotein P-II PF00543.22 gi|261403213|ref|YP_003247437.1| - 1.5e-39 134.7 2.7 1.6e-39 134.6 2.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|261403214|ref|YP_003247438.1| - 2.5e-106 355.7 29.0 2.9e-106 355.5 29.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DDDD PF10161.9 gi|261403214|ref|YP_003247438.1| - 1 9.2 3.3 32 4.4 0.1 3.4 3 0 0 3 3 3 0 Putative mitochondrial precursor protein Methyltrans_SAM PF10672.9 gi|261403215|ref|YP_003247439.1| - 8.3e-17 61.2 0.1 1.1e-16 60.9 0.1 1.2 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_31 PF13847.6 gi|261403215|ref|YP_003247439.1| - 2.8e-12 46.7 0.1 4.7e-12 46.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|261403215|ref|YP_003247439.1| - 1.9e-11 43.9 0.2 1e-10 41.6 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|261403215|ref|YP_003247439.1| - 5.4e-11 42.6 0.5 9.1e-11 41.9 0.5 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|261403215|ref|YP_003247439.1| - 7.1e-11 42.7 0.0 1.8e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|261403215|ref|YP_003247439.1| - 1.5e-08 34.4 0.0 3.1e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|261403215|ref|YP_003247439.1| - 2.4e-08 33.7 0.0 5.5e-08 32.6 0.0 1.6 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|261403215|ref|YP_003247439.1| - 3.8e-08 33.1 0.0 7.1e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|261403215|ref|YP_003247439.1| - 9.1e-08 32.4 0.0 2.9e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 gi|261403215|ref|YP_003247439.1| - 9.1e-07 29.4 0.0 2e-06 28.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403215|ref|YP_003247439.1| - 7.9e-06 25.8 0.0 1.4e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|261403215|ref|YP_003247439.1| - 8.2e-06 25.2 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PUA PF01472.20 gi|261403215|ref|YP_003247439.1| - 8.5e-06 25.6 0.0 2.5e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 PUA domain PUA_3 PF17785.1 gi|261403215|ref|YP_003247439.1| - 1.6e-05 24.6 0.1 7.5e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 PUA-like domain CMAS PF02353.20 gi|261403215|ref|YP_003247439.1| - 2.1e-05 24.0 0.0 4.2e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|261403215|ref|YP_003247439.1| - 3.3e-05 23.4 0.0 7.5e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|261403215|ref|YP_003247439.1| - 5.3e-05 23.2 0.0 0.00013 21.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|261403215|ref|YP_003247439.1| - 0.00016 21.1 0.0 0.00031 20.1 0.0 1.4 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltr_RsmB-F PF01189.17 gi|261403215|ref|YP_003247439.1| - 0.00021 21.0 0.0 0.0014 18.3 0.0 2.1 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|261403215|ref|YP_003247439.1| - 0.00031 21.4 0.0 0.00065 20.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_10 PF05971.12 gi|261403215|ref|YP_003247439.1| - 0.0004 19.8 0.0 0.00079 18.9 0.0 1.5 1 0 0 1 1 1 1 RNA methyltransferase Methyltransf_3 PF01596.17 gi|261403215|ref|YP_003247439.1| - 0.0012 18.1 0.0 0.0033 16.6 0.0 1.7 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.18 gi|261403215|ref|YP_003247439.1| - 0.0056 16.4 0.0 0.022 14.4 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|261403215|ref|YP_003247439.1| - 0.022 14.2 0.1 0.052 13.0 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase TPMT PF05724.11 gi|261403215|ref|YP_003247439.1| - 0.023 14.4 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) tRNA_U5-meth_tr PF05958.11 gi|261403215|ref|YP_003247439.1| - 0.059 12.3 3.7 0.06 12.3 0.0 2.6 3 1 0 3 3 3 0 tRNA (Uracil-5-)-methyltransferase NMD3 PF04981.13 gi|261403216|ref|YP_003247440.1| - 4.6e-59 199.8 0.3 6e-59 199.4 0.3 1.1 1 0 0 1 1 1 1 NMD3 family DUF3916 PF13079.6 gi|261403216|ref|YP_003247440.1| - 0.047 13.6 0.0 0.087 12.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3916) DZR PF12773.7 gi|261403216|ref|YP_003247440.1| - 0.05 13.6 0.7 1.3 9.1 0.4 2.4 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_OB PF03120.16 gi|261403216|ref|YP_003247440.1| - 0.053 13.4 0.3 2.6 8.0 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain SAM_adeno_trans PF01887.16 gi|261403217|ref|YP_003247441.1| - 6.4e-69 232.0 0.0 7.4e-69 231.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Ribosomal_L11_N PF03946.14 gi|261403218|ref|YP_003247442.1| - 2e-24 85.2 1.7 2.5e-24 84.9 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|261403218|ref|YP_003247442.1| - 4.3e-23 81.6 0.2 8e-23 80.7 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain DUF3646 PF12362.8 gi|261403218|ref|YP_003247442.1| - 0.043 14.1 0.0 0.074 13.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III gamma and tau subunits C terminal Poly_export PF02563.16 gi|261403218|ref|YP_003247442.1| - 0.046 13.9 0.1 2.4 8.4 0.0 2.3 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein DUF473 PF04322.12 gi|261403219|ref|YP_003247443.1| - 1.1e-27 96.2 1.5 1.3e-27 95.9 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF473) PAC2 PF09754.9 gi|261403220|ref|YP_003247444.1| - 9.1e-38 130.4 0.0 1e-37 130.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TAF PF02969.17 gi|261403220|ref|YP_003247444.1| - 0.53 10.5 1.7 1.7 8.9 0.8 2.0 1 1 1 2 2 2 0 TATA box binding protein associated factor (TAF) Pterin_bind PF00809.22 gi|261403221|ref|YP_003247445.1| - 5.1e-14 52.5 0.2 8.5e-14 51.8 0.2 1.3 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.6 gi|261403221|ref|YP_003247445.1| - 1.9e-11 44.0 0.3 1.8e-10 40.9 0.3 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) Skp1 PF01466.19 gi|261403221|ref|YP_003247445.1| - 0.03 14.4 0.4 6.3 7.0 0.0 3.0 2 0 0 2 2 2 0 Skp1 family, dimerisation domain DUF4830 PF16112.5 gi|261403221|ref|YP_003247445.1| - 0.076 13.5 0.2 0.34 11.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4830) KH_8 PF17903.1 gi|261403221|ref|YP_003247445.1| - 0.75 9.9 4.7 0.5 10.5 0.6 2.8 3 0 0 3 3 3 0 Krr1 KH1 domain PK PF00224.21 gi|261403222|ref|YP_003247446.1| - 2.5e-85 286.4 13.3 4.8e-85 285.5 13.3 1.4 1 1 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|261403222|ref|YP_003247446.1| - 1.3e-18 67.4 0.0 4.7e-17 62.3 0.0 2.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|261403222|ref|YP_003247446.1| - 2.7e-05 23.4 0.4 6e-05 22.3 0.2 1.7 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF1065 PF06358.11 gi|261403222|ref|YP_003247446.1| - 0.0073 16.2 0.1 0.074 13.0 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF1065) RTT107_BRCT_6 PF16771.5 gi|261403222|ref|YP_003247446.1| - 0.073 13.2 0.2 0.073 13.2 0.2 2.5 2 0 0 2 2 2 0 Regulator of Ty1 transposition protein 107 BRCT domain Inositol_P PF00459.25 gi|261403223|ref|YP_003247447.1| - 9.5e-32 110.6 0.0 1.2e-31 110.3 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|261403223|ref|YP_003247447.1| - 0.0051 16.3 0.1 0.012 15.1 0.0 1.7 2 0 0 2 2 2 1 Fructose-1-6-bisphosphatase, N-terminal domain PQ-loop PF04193.14 gi|261403224|ref|YP_003247448.1| - 7.1e-11 41.7 1.4 7.1e-11 41.7 1.4 1.6 1 1 0 1 1 1 1 PQ loop repeat MtN3_slv PF03083.16 gi|261403224|ref|YP_003247448.1| - 1.4e-08 34.6 2.7 1.8e-08 34.3 2.7 1.2 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.11 gi|261403224|ref|YP_003247448.1| - 1.1e-05 25.5 0.9 1.5e-05 25.0 0.9 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain SecD_SecF PF02355.16 gi|261403225|ref|YP_003247449.1| - 6.5e-20 71.3 7.3 1.4e-19 70.2 7.3 1.5 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|261403225|ref|YP_003247449.1| - 2.4e-09 36.4 0.1 2.8e-08 33.0 0.2 2.3 2 0 0 2 2 2 1 SecD/SecF GG Motif ACR_tran PF00873.19 gi|261403225|ref|YP_003247449.1| - 0.00037 18.3 6.5 0.00054 17.8 6.5 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Patched PF02460.18 gi|261403225|ref|YP_003247449.1| - 0.002 16.3 10.1 0.0028 15.8 10.1 1.1 1 0 0 1 1 1 1 Patched family MMPL PF03176.15 gi|261403225|ref|YP_003247449.1| - 0.0032 16.5 5.9 0.0032 16.5 5.9 1.7 2 0 0 2 2 2 1 MMPL family POTRA PF07244.15 gi|261403225|ref|YP_003247449.1| - 0.095 13.3 0.1 3.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Surface antigen variable number repeat DUF1376 PF07120.11 gi|261403226|ref|YP_003247450.1| - 0.026 14.8 0.4 0.028 14.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1376) ILVD_EDD PF00920.21 gi|261403227|ref|YP_003247451.1| - 4.5e-220 731.6 0.3 5.1e-220 731.5 0.3 1.0 1 0 0 1 1 1 1 Dehydratase family Radical_SAM PF04055.21 gi|261403228|ref|YP_003247452.1| - 7.1e-15 55.8 0.0 9.5e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|261403228|ref|YP_003247452.1| - 1.1e-11 44.9 0.0 2.3e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|261403228|ref|YP_003247452.1| - 6.6e-11 42.6 0.1 1.1e-10 41.9 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain HEPN_AbiA_CTD PF18732.1 gi|261403228|ref|YP_003247452.1| - 0.025 14.5 1.7 0.15 12.0 0.5 2.2 2 0 0 2 2 2 0 HEPN like, Abia C-terminal domain SRP19 PF01922.17 gi|261403228|ref|YP_003247452.1| - 0.12 13.3 0.2 0.44 11.5 0.1 2.0 3 0 0 3 3 3 0 SRP19 protein DHH PF01368.20 gi|261403229|ref|YP_003247453.1| - 1e-23 83.5 0.0 2e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA2 PF02833.14 gi|261403229|ref|YP_003247453.1| - 4.5e-23 82.0 0.3 7.9e-23 81.2 0.3 1.4 1 0 0 1 1 1 1 DHHA2 domain DHC PF09626.10 gi|261403230|ref|YP_003247454.1| - 0.13 13.2 0.5 0.15 12.9 0.5 1.2 1 0 0 1 1 1 0 Dihaem cytochrome c RST PF12174.8 gi|261403230|ref|YP_003247454.1| - 0.19 11.6 3.9 1.6 8.7 0.4 2.3 2 1 0 2 2 2 0 RCD1-SRO-TAF4 (RST) plant domain DUF5615 PF18480.1 gi|261403231|ref|YP_003247455.1| - 0.048 13.4 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) DUF5379 PF17350.2 gi|261403233|ref|YP_003247457.1| - 2.1e-46 156.2 6.8 2.3e-46 156.0 6.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5379) DUF1743 PF08489.11 gi|261403234|ref|YP_003247458.1| - 4e-41 139.7 0.1 1e-40 138.4 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|261403234|ref|YP_003247458.1| - 3.6e-08 33.3 0.3 8.5e-08 32.1 0.3 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain zf_Rg PF17915.1 gi|261403234|ref|YP_003247458.1| - 0.00019 20.8 1.8 0.00043 19.6 1.8 1.5 1 0 0 1 1 1 1 Reverse gyrase zinc finger tRNA_anti_2 PF13742.6 gi|261403234|ref|YP_003247458.1| - 0.0053 16.9 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.11 gi|261403234|ref|YP_003247458.1| - 0.013 15.4 0.5 0.029 14.3 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|261403234|ref|YP_003247458.1| - 0.017 15.0 1.1 0.03 14.2 1.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RMI2 PF16100.5 gi|261403234|ref|YP_003247458.1| - 0.02 14.7 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 RNA_POL_M_15KD PF02150.16 gi|261403234|ref|YP_003247458.1| - 0.024 14.5 1.6 0.068 13.1 1.6 1.8 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit C1_2 PF03107.16 gi|261403234|ref|YP_003247458.1| - 0.067 13.5 0.6 0.16 12.3 0.6 1.6 1 0 0 1 1 1 0 C1 domain Zn_ribbon_SprT PF17283.2 gi|261403234|ref|YP_003247458.1| - 0.1 12.5 2.1 0.22 11.5 2.1 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|261403234|ref|YP_003247458.1| - 0.16 12.0 0.8 0.33 11.0 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon MSA-2c PF12238.8 gi|261403234|ref|YP_003247458.1| - 0.2 11.6 0.7 0.39 10.7 0.7 1.4 1 0 0 1 1 1 0 Merozoite surface antigen 2c Zn_Tnp_IS1595 PF12760.7 gi|261403234|ref|YP_003247458.1| - 0.95 9.5 2.7 2 8.5 2.7 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|261403234|ref|YP_003247458.1| - 6.1 6.9 7.7 1.2e+02 2.7 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) DUF4352 PF11611.8 gi|261403235|ref|YP_003247459.1| - 3.5e-17 62.9 0.4 4.6e-17 62.5 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4352) STAS PF01740.21 gi|261403235|ref|YP_003247459.1| - 0.19 11.4 1.2 0.25 11.0 0.3 1.9 2 1 0 2 2 2 0 STAS domain Nit_Regul_Hom PF10126.9 gi|261403236|ref|YP_003247460.1| - 5e-39 132.6 2.1 5.7e-39 132.5 2.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII Kinase-PPPase PF03618.14 gi|261403236|ref|YP_003247460.1| - 0.035 13.9 0.0 0.037 13.8 0.0 1.1 1 0 0 1 1 1 0 Kinase/pyrophosphorylase Sigma70_r3 PF04539.16 gi|261403236|ref|YP_003247460.1| - 0.035 14.2 0.3 0.06 13.5 0.3 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 Phage_TAC_7 PF10109.9 gi|261403236|ref|YP_003247460.1| - 0.038 14.1 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 ATP-synt_F PF01990.17 gi|261403236|ref|YP_003247460.1| - 0.054 13.8 0.1 0.076 13.3 0.1 1.2 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit Nit_Regul_Hom PF10126.9 gi|261403237|ref|YP_003247461.1| - 1.2e-48 163.6 0.2 1.3e-48 163.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF134 PF02001.16 gi|261403238|ref|YP_003247462.1| - 1.1e-44 150.9 0.1 1.3e-44 150.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.12 gi|261403238|ref|YP_003247462.1| - 8.2e-05 22.2 0.1 0.00014 21.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|261403238|ref|YP_003247462.1| - 0.002 17.6 0.1 0.0032 17.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_8 PF02954.19 gi|261403238|ref|YP_003247462.1| - 0.0081 15.9 0.2 0.025 14.4 0.2 1.9 1 1 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 gi|261403238|ref|YP_003247462.1| - 0.033 14.0 0.1 0.095 12.5 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_17 PF12728.7 gi|261403238|ref|YP_003247462.1| - 0.066 13.4 0.1 0.16 12.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|261403238|ref|YP_003247462.1| - 0.09 12.8 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix ABC_tran PF00005.27 gi|261403239|ref|YP_003247463.1| - 1.1e-53 181.4 0.0 1.6e-25 90.2 0.0 2.6 3 0 0 3 3 2 2 ABC transporter RsgA_GTPase PF03193.16 gi|261403239|ref|YP_003247463.1| - 4.3e-07 30.0 0.6 0.028 14.3 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|261403239|ref|YP_003247463.1| - 1.5e-06 27.8 0.6 0.066 12.6 0.0 3.5 2 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|261403239|ref|YP_003247463.1| - 2.1e-06 27.4 0.9 0.014 15.1 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|261403239|ref|YP_003247463.1| - 5.6e-06 26.4 3.6 1.6 8.5 0.1 4.1 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|261403239|ref|YP_003247463.1| - 0.00012 22.4 0.2 0.34 11.2 0.0 2.9 2 2 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|261403239|ref|YP_003247463.1| - 0.00023 20.5 4.6 0.6 9.3 0.0 3.8 4 0 0 4 4 4 2 Zeta toxin AAA_18 PF13238.6 gi|261403239|ref|YP_003247463.1| - 0.00023 21.7 1.5 0.16 12.5 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|261403239|ref|YP_003247463.1| - 0.00068 19.5 1.2 0.37 10.4 0.1 3.3 3 1 1 4 4 3 1 AAA ATPase domain AAA_16 PF13191.6 gi|261403239|ref|YP_003247463.1| - 0.001 19.5 0.6 1.4 9.3 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain MMR_HSR1 PF01926.23 gi|261403239|ref|YP_003247463.1| - 0.0029 17.7 0.6 12 6.0 0.0 3.9 4 0 0 4 4 4 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|261403239|ref|YP_003247463.1| - 0.003 16.8 1.8 0.12 11.5 0.0 2.9 3 0 0 3 3 3 1 NB-ARC domain Mg_chelatase PF01078.21 gi|261403239|ref|YP_003247463.1| - 0.0053 16.2 0.1 0.079 12.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|261403239|ref|YP_003247463.1| - 0.0081 16.3 0.4 0.42 10.8 0.1 2.9 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|261403239|ref|YP_003247463.1| - 0.0085 15.8 0.7 3.7 7.2 0.0 3.3 3 0 0 3 3 3 1 IstB-like ATP binding protein ATP-synt_ab PF00006.25 gi|261403239|ref|YP_003247463.1| - 0.0093 15.6 0.0 0.034 13.8 0.0 2.0 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|261403239|ref|YP_003247463.1| - 0.021 14.5 0.6 2.6 7.7 0.1 2.7 3 0 0 3 3 3 0 AAA domain TsaE PF02367.17 gi|261403239|ref|YP_003247463.1| - 0.026 14.5 0.3 0.63 10.0 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|261403239|ref|YP_003247463.1| - 0.04 13.7 0.0 2.2 8.0 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|261403239|ref|YP_003247463.1| - 0.041 14.3 0.2 3.7 8.0 0.0 2.8 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|261403239|ref|YP_003247463.1| - 0.046 14.0 0.3 1.2 9.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|261403239|ref|YP_003247463.1| - 0.055 13.9 2.6 0.33 11.4 0.1 3.3 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.10 gi|261403239|ref|YP_003247463.1| - 0.069 13.3 0.8 0.14 12.3 0.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain NACHT PF05729.12 gi|261403239|ref|YP_003247463.1| - 0.073 13.0 5.5 3.1 7.7 0.2 3.2 4 0 0 4 4 3 0 NACHT domain AAA_24 PF13479.6 gi|261403239|ref|YP_003247463.1| - 0.074 12.8 0.9 3.5 7.3 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|261403239|ref|YP_003247463.1| - 0.081 13.4 6.7 1 9.8 0.4 2.7 1 1 1 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|261403239|ref|YP_003247463.1| - 0.12 12.7 0.0 15 5.9 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Roc PF08477.13 gi|261403239|ref|YP_003247463.1| - 0.16 12.2 0.4 33 4.7 0.2 2.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_5 PF07728.14 gi|261403239|ref|YP_003247463.1| - 0.17 11.9 1.2 0.89 9.5 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|261403239|ref|YP_003247463.1| - 0.18 11.3 1.0 2.1 7.7 0.1 2.7 3 0 0 3 3 3 0 PhoH-like protein MobB PF03205.14 gi|261403239|ref|YP_003247463.1| - 0.25 11.3 5.1 0.89 9.5 0.1 3.2 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 gi|261403239|ref|YP_003247463.1| - 0.28 11.2 8.0 2.8 8.0 0.5 3.2 2 1 2 4 4 4 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|261403239|ref|YP_003247463.1| - 0.33 10.5 1.4 4.4 6.8 0.0 2.6 3 0 0 3 3 2 0 AAA domain zinc_ribbon_2 PF13240.6 gi|261403239|ref|YP_003247463.1| - 0.59 9.9 4.6 12 5.7 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain AAA_23 PF13476.6 gi|261403240|ref|YP_003247464.1| - 7.1e-26 91.9 17.3 7.1e-26 91.9 17.3 9.4 1 1 2 3 3 1 1 AAA domain Rad50_zn_hook PF04423.14 gi|261403240|ref|YP_003247464.1| - 1.7e-10 40.5 6.4 1.7e-10 40.5 6.4 12.2 15 4 1 16 16 10 1 Rad50 zinc hook motif SMC_N PF02463.19 gi|261403240|ref|YP_003247464.1| - 5.1e-07 29.4 71.1 2.1e-06 27.3 71.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Baculo_PEP_C PF04513.12 gi|261403240|ref|YP_003247464.1| - 6.7e-07 29.4 32.6 0.00061 19.9 1.1 7.2 4 1 1 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 gi|261403240|ref|YP_003247464.1| - 3.3e-06 26.6 25.1 3.3e-06 26.6 25.1 7.5 2 2 3 6 6 4 3 Growth-arrest specific micro-tubule binding AAA_29 PF13555.6 gi|261403240|ref|YP_003247464.1| - 4e-06 26.5 0.0 7.2e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|261403240|ref|YP_003247464.1| - 1.8e-05 24.7 62.6 1.8e-05 24.7 62.6 4.4 1 1 1 2 2 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|261403240|ref|YP_003247464.1| - 4.7e-05 23.6 0.0 0.00013 22.1 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|261403240|ref|YP_003247464.1| - 6.1e-05 22.7 0.1 6.1e-05 22.7 0.1 5.0 5 1 0 5 5 5 1 AAA domain AAA_21 PF13304.6 gi|261403240|ref|YP_003247464.1| - 0.00017 21.5 0.1 0.00017 21.5 0.1 5.6 2 1 0 5 5 5 2 AAA domain, putative AbiEii toxin, Type IV TA system ERM PF00769.19 gi|261403240|ref|YP_003247464.1| - 0.00041 20.2 34.3 0.00041 20.2 34.3 3.8 2 1 2 4 4 1 1 Ezrin/radixin/moesin family Terminase_6 PF03237.15 gi|261403240|ref|YP_003247464.1| - 0.0013 18.5 0.1 0.018 14.7 0.0 3.0 3 0 0 3 3 2 1 Terminase-like family AAA_13 PF13166.6 gi|261403240|ref|YP_003247464.1| - 0.0017 17.1 120.1 0.085 11.5 20.0 6.3 2 1 4 6 6 6 3 AAA domain MAD PF05557.13 gi|261403240|ref|YP_003247464.1| - 0.0027 16.2 35.9 0.0027 16.2 35.9 4.3 1 1 3 4 4 3 1 Mitotic checkpoint protein Spc7 PF08317.11 gi|261403240|ref|YP_003247464.1| - 0.0084 15.0 133.4 0.067 12.1 17.6 6.9 2 2 3 6 6 6 4 Spc7 kinetochore protein ABC_tran PF00005.27 gi|261403240|ref|YP_003247464.1| - 0.012 16.1 0.0 0.012 16.1 0.0 7.1 2 1 0 2 2 1 0 ABC transporter BLOC1_2 PF10046.9 gi|261403240|ref|YP_003247464.1| - 0.013 15.8 7.1 0.013 15.8 7.1 12.7 3 3 9 13 13 13 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LOH1CR12 PF10158.9 gi|261403240|ref|YP_003247464.1| - 0.013 15.5 3.5 0.013 15.5 3.5 8.4 5 2 4 10 10 9 0 Tumour suppressor protein AAA_16 PF13191.6 gi|261403240|ref|YP_003247464.1| - 0.11 12.8 0.3 1.2 9.5 0.0 2.9 3 0 0 3 3 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|261403240|ref|YP_003247464.1| - 0.16 12.2 0.0 0.16 12.2 0.0 4.7 5 1 1 6 6 4 0 AAA domain DUF1664 PF07889.12 gi|261403240|ref|YP_003247464.1| - 0.37 10.9 86.5 0.017 15.1 2.6 9.4 3 3 4 9 9 9 0 Protein of unknown function (DUF1664) APG17 PF04108.12 gi|261403240|ref|YP_003247464.1| - 0.58 9.2 93.2 0.34 10.0 9.8 6.6 2 2 1 4 4 4 0 Autophagy protein Apg17 MukB PF04310.12 gi|261403240|ref|YP_003247464.1| - 0.75 9.5 0.0 0.75 9.5 0.0 5.5 3 2 4 8 8 8 0 MukB N-terminal NPV_P10 PF05531.12 gi|261403240|ref|YP_003247464.1| - 0.81 10.2 59.7 1.9 9.0 1.0 10.8 6 4 4 10 10 9 0 Nucleopolyhedrovirus P10 protein HBM PF16591.5 gi|261403240|ref|YP_003247464.1| - 1.4 8.3 38.0 0.058 12.8 0.5 6.4 3 2 0 5 5 5 0 Helical bimodular sensor domain WXG100 PF06013.12 gi|261403240|ref|YP_003247464.1| - 2.4 8.5 19.4 1.2 9.4 0.2 7.7 10 1 0 10 10 8 0 Proteins of 100 residues with WXG TarH PF02203.15 gi|261403240|ref|YP_003247464.1| - 3.9 7.3 7.3 23 4.9 1.5 3.6 2 1 1 3 3 3 0 Tar ligand binding domain homologue V-SNARE_C PF12352.8 gi|261403240|ref|YP_003247464.1| - 4 7.8 14.1 2.3 8.6 0.1 6.6 7 1 1 8 8 6 0 Snare region anchored in the vesicle membrane C-terminus Laminin_II PF06009.12 gi|261403240|ref|YP_003247464.1| - 4.6 7.3 90.5 0.66 10.0 10.3 7.7 2 2 4 7 7 7 0 Laminin Domain II COG2 PF06148.11 gi|261403240|ref|YP_003247464.1| - 9 6.4 77.2 0.46 10.6 7.3 8.8 3 2 4 8 8 8 0 COG (conserved oligomeric Golgi) complex component, COG2 Metallophos PF00149.28 gi|261403241|ref|YP_003247465.1| - 3e-16 60.5 1.3 4.5e-16 59.9 0.5 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|261403241|ref|YP_003247465.1| - 5.3e-12 46.2 0.0 9.7e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain V4R PF02830.18 gi|261403242|ref|YP_003247466.1| - 4.4e-18 65.0 2.9 6.2e-18 64.6 2.9 1.2 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|261403242|ref|YP_003247466.1| - 3.3e-08 33.5 0.0 6.8e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2507) ATC_hydrolase PF14196.6 gi|261403242|ref|YP_003247466.1| - 0.00095 20.0 0.8 0.0014 19.4 0.8 1.3 1 0 0 1 1 1 1 L-2-amino-thiazoline-4-carboxylic acid hydrolase DNA_gyraseA_C PF03989.13 gi|261403242|ref|YP_003247466.1| - 0.15 11.5 0.0 4.5 6.8 0.0 2.2 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller MoaE PF02391.17 gi|261403243|ref|YP_003247467.1| - 3.8e-19 69.0 0.0 4.4e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 MoaE protein DDE_Tnp_IS240 PF13610.6 gi|261403243|ref|YP_003247467.1| - 0.1 12.8 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 DDE domain Oxidored_q6 PF01058.22 gi|261403244|ref|YP_003247468.1| - 1e-25 90.1 0.9 1.2e-25 89.8 0.9 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF2367 PF10164.9 gi|261403244|ref|YP_003247468.1| - 0.12 12.9 2.9 7.8 7.1 0.2 3.0 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2367) DUF1490 PF07371.12 gi|261403244|ref|YP_003247468.1| - 0.13 12.4 0.1 0.28 11.3 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1490) NADHdh PF00146.21 gi|261403245|ref|YP_003247469.1| - 4.4e-18 65.6 19.2 2e-09 37.2 1.9 2.0 2 0 0 2 2 2 2 NADH dehydrogenase HcyBio PF01837.16 gi|261403246|ref|YP_003247470.1| - 9.2e-70 235.2 0.0 2.4e-69 233.8 0.0 1.6 1 1 0 1 1 1 1 Homocysteine biosynthesis enzyme, sulfur-incorporation Fer4_2 PF12797.7 gi|261403246|ref|YP_003247470.1| - 0.0013 18.7 11.6 0.13 12.4 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403246|ref|YP_003247470.1| - 0.0052 17.3 8.2 0.31 11.7 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403246|ref|YP_003247470.1| - 0.0062 16.7 11.5 0.013 15.6 11.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403246|ref|YP_003247470.1| - 0.0082 16.3 11.5 0.021 15.0 11.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403246|ref|YP_003247470.1| - 0.037 14.1 2.9 0.037 14.1 2.9 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403246|ref|YP_003247470.1| - 1.4 9.1 16.2 2.4 8.3 14.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403246|ref|YP_003247470.1| - 2.6 9.1 16.1 1.3 10.0 3.1 3.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain zf-CXXC PF02008.20 gi|261403246|ref|YP_003247470.1| - 5.2 7.2 14.1 0.62 10.1 3.2 2.6 2 0 0 2 2 2 0 CXXC zinc finger domain Peptidase_M48 PF01435.18 gi|261403247|ref|YP_003247471.1| - 1.1e-41 142.8 0.3 1.7e-41 142.2 0.0 1.4 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|261403247|ref|YP_003247471.1| - 0.0011 18.2 1.9 0.0014 17.9 0.7 1.8 2 1 0 2 2 2 1 BlaR1 peptidase M56 DUF2586 PF10758.9 gi|261403247|ref|YP_003247471.1| - 0.048 12.9 0.0 0.065 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2586) MFS_2 PF13347.6 gi|261403247|ref|YP_003247471.1| - 0.23 10.0 5.4 0.22 10.0 2.2 2.0 2 0 0 2 2 2 0 MFS/sugar transport protein PrmA PF06325.13 gi|261403248|ref|YP_003247472.1| - 2.1e-15 56.9 0.2 2.8e-15 56.5 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|261403248|ref|YP_003247472.1| - 3.3e-11 43.3 0.2 7.4e-11 42.2 0.1 1.6 1 1 1 2 2 2 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|261403248|ref|YP_003247472.1| - 2.7e-08 33.7 0.1 4.2e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403248|ref|YP_003247472.1| - 1.1e-07 32.5 0.0 2e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|261403248|ref|YP_003247472.1| - 2.3e-06 27.3 0.0 4.9e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|261403248|ref|YP_003247472.1| - 1.4e-05 24.3 0.1 5.7e-05 22.3 0.0 1.8 1 1 1 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|261403248|ref|YP_003247472.1| - 2e-05 25.1 0.0 3.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261403248|ref|YP_003247472.1| - 5.1e-05 23.3 0.3 0.00011 22.2 0.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain PRMT5 PF05185.16 gi|261403248|ref|YP_003247472.1| - 0.00011 22.1 0.1 0.00016 21.5 0.1 1.3 1 0 0 1 1 1 1 PRMT5 arginine-N-methyltransferase PCMT PF01135.19 gi|261403248|ref|YP_003247472.1| - 0.0003 20.6 0.1 0.0007 19.4 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|261403248|ref|YP_003247472.1| - 0.0089 15.5 0.2 0.021 14.3 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|261403248|ref|YP_003247472.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|261403248|ref|YP_003247472.1| - 0.047 14.4 0.0 0.095 13.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|261403248|ref|YP_003247472.1| - 0.065 12.5 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Ubie_methyltran PF01209.18 gi|261403248|ref|YP_003247472.1| - 0.096 12.0 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF2114 PF09887.9 gi|261403249|ref|YP_003247473.1| - 4.4e-228 757.2 2.8 5e-228 757.0 2.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2114) DAO PF01266.24 gi|261403250|ref|YP_003247474.1| - 3.5e-07 30.1 0.0 0.00014 21.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|261403250|ref|YP_003247474.1| - 5.7e-07 29.1 0.3 6.4e-06 25.6 0.3 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|261403250|ref|YP_003247474.1| - 3.6e-05 23.3 0.0 0.0065 15.9 0.0 2.4 2 0 0 2 2 2 1 GMC oxidoreductase NAD_binding_8 PF13450.6 gi|261403250|ref|YP_003247474.1| - 6.8e-05 23.0 0.0 0.00019 21.6 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|261403250|ref|YP_003247474.1| - 0.00037 19.8 3.6 1.9 7.7 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|261403250|ref|YP_003247474.1| - 0.0051 17.3 3.4 0.48 11.0 0.1 3.8 5 0 0 5 5 4 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|261403250|ref|YP_003247474.1| - 0.016 13.9 0.0 2 7.1 0.0 2.4 2 0 0 2 2 2 0 HI0933-like protein TrkA_N PF02254.18 gi|261403250|ref|YP_003247474.1| - 0.033 14.4 0.8 0.085 13.1 0.2 2.0 2 0 0 2 2 2 0 TrkA-N domain Fer4 PF00037.27 gi|261403250|ref|YP_003247474.1| - 0.039 13.8 0.8 0.076 12.9 0.8 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain Lycopene_cycl PF05834.12 gi|261403250|ref|YP_003247474.1| - 0.049 12.7 0.0 0.058 12.4 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein DUF4314 PF14192.6 gi|261403250|ref|YP_003247474.1| - 0.059 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4314) Trp_halogenase PF04820.14 gi|261403250|ref|YP_003247474.1| - 0.061 12.2 0.0 0.091 11.6 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|261403250|ref|YP_003247474.1| - 0.061 12.4 0.0 0.18 10.8 0.0 1.7 2 0 0 2 2 2 0 FAD binding domain RNA_pol_Rpb1_5 PF04998.17 gi|261403250|ref|YP_003247474.1| - 0.064 12.7 1.1 0.13 11.6 0.5 1.6 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 5 Thi4 PF01946.17 gi|261403250|ref|YP_003247474.1| - 0.11 11.8 0.1 0.61 9.3 0.0 2.2 2 0 0 2 2 2 0 Thi4 family Mqo PF06039.15 gi|261403250|ref|YP_003247474.1| - 0.11 11.0 0.0 3.3 6.2 0.0 2.2 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) GMC_oxred_C PF05199.13 gi|261403250|ref|YP_003247474.1| - 0.12 12.8 0.0 0.25 11.9 0.0 1.6 1 0 0 1 1 1 0 GMC oxidoreductase CARDB PF07705.11 gi|261403251|ref|YP_003247475.1| - 1.9e-07 31.3 5.3 0.0059 16.9 0.1 3.6 3 1 0 3 3 3 3 CARDB NPCBM_assoc PF10633.9 gi|261403251|ref|YP_003247475.1| - 0.00044 20.4 0.0 0.72 10.1 0.0 3.1 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF2393 PF09624.10 gi|261403251|ref|YP_003247475.1| - 0.0025 17.8 7.1 0.088 12.8 0.5 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF2393) DUF4625 PF15418.6 gi|261403251|ref|YP_003247475.1| - 0.003 17.8 2.6 0.003 17.8 2.6 2.6 3 1 0 4 4 4 1 Domain of unknown function (DUF4625) Arrestin_C PF02752.22 gi|261403251|ref|YP_003247475.1| - 0.01 16.3 6.4 0.35 11.3 1.0 3.0 3 0 0 3 3 3 0 Arrestin (or S-antigen), C-terminal domain DUF4426 PF14467.6 gi|261403251|ref|YP_003247475.1| - 0.055 13.5 1.1 1.3 9.0 0.1 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4426) Asp4 PF16996.5 gi|261403251|ref|YP_003247475.1| - 0.063 13.1 0.7 0.14 11.9 0.3 1.9 2 0 0 2 2 2 0 Accessory secretory protein Sec Asp4 DUF11 PF01345.18 gi|261403251|ref|YP_003247475.1| - 0.081 13.2 0.0 27 5.2 0.0 3.9 4 1 0 4 4 4 0 Domain of unknown function DUF11 SAM_adeno_trans PF01887.16 gi|261403251|ref|YP_003247475.1| - 0.095 12.1 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase MacB_PCD PF12704.7 gi|261403252|ref|YP_003247476.1| - 7.5e-33 114.5 0.5 3.3e-32 112.5 0.0 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|261403252|ref|YP_003247476.1| - 6.8e-14 52.1 16.3 6.4e-13 49.0 5.9 3.2 3 0 0 3 3 3 2 FtsX-like permease family tRNA_edit PF04073.15 gi|261403252|ref|YP_003247476.1| - 0.0035 17.4 0.1 0.031 14.4 0.0 2.2 1 1 1 2 2 2 1 Aminoacyl-tRNA editing domain Flagellin_IN PF07196.13 gi|261403252|ref|YP_003247476.1| - 0.049 13.8 0.1 0.11 12.7 0.1 1.5 1 0 0 1 1 1 0 Flagellin hook IN motif CD34_antigen PF06365.12 gi|261403252|ref|YP_003247476.1| - 0.57 9.7 1.8 6.3 6.3 0.3 2.2 2 0 0 2 2 2 0 CD34/Podocalyxin family DUF4064 PF13273.6 gi|261403252|ref|YP_003247476.1| - 0.62 10.4 22.0 1.6 9.0 0.1 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF4064) ABC_tran PF00005.27 gi|261403253|ref|YP_003247477.1| - 1.7e-35 122.5 0.0 2.7e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|261403253|ref|YP_003247477.1| - 8.5e-10 38.4 0.8 5.6e-09 35.8 0.8 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|261403253|ref|YP_003247477.1| - 1.1e-07 31.9 0.1 0.004 17.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_1 PF03266.15 gi|261403253|ref|YP_003247477.1| - 5.1e-06 26.5 1.6 0.0043 17.0 0.5 2.2 2 0 0 2 2 2 2 NTPase RsgA_GTPase PF03193.16 gi|261403253|ref|YP_003247477.1| - 1.8e-05 24.7 0.2 4.8e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|261403253|ref|YP_003247477.1| - 2.3e-05 24.4 0.2 0.00018 21.5 0.0 2.0 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_29 PF13555.6 gi|261403253|ref|YP_003247477.1| - 0.00027 20.6 0.0 0.00049 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|261403253|ref|YP_003247477.1| - 0.00037 20.8 0.5 0.0052 17.1 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|261403253|ref|YP_003247477.1| - 0.0016 18.8 0.0 0.0026 18.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|261403253|ref|YP_003247477.1| - 0.002 17.9 0.2 0.059 13.1 0.0 2.3 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|261403253|ref|YP_003247477.1| - 0.0022 17.6 0.0 0.01 15.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|261403253|ref|YP_003247477.1| - 0.0033 17.9 1.8 0.0091 16.5 1.8 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|261403253|ref|YP_003247477.1| - 0.0035 17.1 1.4 0.089 12.5 0.2 2.2 1 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|261403253|ref|YP_003247477.1| - 0.0039 17.1 0.3 0.0067 16.4 0.3 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea G-alpha PF00503.20 gi|261403253|ref|YP_003247477.1| - 0.008 15.4 0.1 0.0093 15.2 0.1 1.2 1 0 0 1 1 1 1 G-protein alpha subunit AAA PF00004.29 gi|261403253|ref|YP_003247477.1| - 0.009 16.4 1.5 0.38 11.2 1.5 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|261403253|ref|YP_003247477.1| - 0.019 15.0 0.5 0.045 13.8 0.5 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|261403253|ref|YP_003247477.1| - 0.019 15.5 1.3 0.14 12.7 1.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|261403253|ref|YP_003247477.1| - 0.022 15.0 0.1 0.043 14.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|261403253|ref|YP_003247477.1| - 0.025 15.0 0.2 0.089 13.2 0.0 2.0 2 1 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|261403253|ref|YP_003247477.1| - 0.025 14.3 0.3 0.62 9.8 0.1 2.4 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|261403253|ref|YP_003247477.1| - 0.042 12.9 0.3 0.22 10.5 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|261403253|ref|YP_003247477.1| - 0.051 13.7 0.3 0.16 12.1 0.3 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|261403253|ref|YP_003247477.1| - 0.099 12.9 0.0 1.3 9.4 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|261403253|ref|YP_003247477.1| - 0.12 11.8 0.1 0.48 9.8 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SWIM PF04434.17 gi|261403254|ref|YP_003247478.1| - 0.0001 21.8 0.7 0.00022 20.8 0.7 1.6 1 0 0 1 1 1 1 SWIM zinc finger DUF3791 PF12668.7 gi|261403254|ref|YP_003247478.1| - 0.032 14.3 0.9 4.9 7.3 0.2 3.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3791) AAA PF00004.29 gi|261403255|ref|YP_003247479.1| - 2.8e-40 137.8 0.0 6.4e-40 136.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|261403255|ref|YP_003247479.1| - 1.3e-09 38.4 0.0 2.4e-09 37.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|261403255|ref|YP_003247479.1| - 2e-09 37.4 0.0 1e-08 35.1 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_3 PF17862.1 gi|261403255|ref|YP_003247479.1| - 9.2e-07 28.6 0.0 1.8e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 AAA+ lid domain TIP49 PF06068.13 gi|261403255|ref|YP_003247479.1| - 1.2e-06 28.0 0.0 2.8e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 TIP49 P-loop domain DUF815 PF05673.13 gi|261403255|ref|YP_003247479.1| - 2.6e-06 26.8 0.0 0.00018 20.8 0.0 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|261403255|ref|YP_003247479.1| - 1.1e-05 25.9 0.0 0.0021 18.5 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|261403255|ref|YP_003247479.1| - 3e-05 24.3 0.0 0.0083 16.4 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|261403255|ref|YP_003247479.1| - 3.1e-05 24.0 0.1 0.00021 21.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|261403255|ref|YP_003247479.1| - 0.0001 22.4 0.0 0.00016 21.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|261403255|ref|YP_003247479.1| - 0.00057 19.7 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|261403255|ref|YP_003247479.1| - 0.00094 18.6 0.0 0.0024 17.3 0.0 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.18 gi|261403255|ref|YP_003247479.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_7 PF12775.7 gi|261403255|ref|YP_003247479.1| - 0.0016 18.0 0.1 0.016 14.7 0.1 2.5 2 1 0 2 2 2 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|261403255|ref|YP_003247479.1| - 0.0055 17.1 0.0 0.011 16.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_18 PF13238.6 gi|261403255|ref|YP_003247479.1| - 0.0059 17.1 0.0 0.012 16.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|261403255|ref|YP_003247479.1| - 0.012 15.0 0.1 0.8 9.0 0.0 2.5 1 1 1 2 2 2 0 KaiC AAA_14 PF13173.6 gi|261403255|ref|YP_003247479.1| - 0.015 15.4 0.0 0.033 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|261403255|ref|YP_003247479.1| - 0.017 14.3 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_28 PF13521.6 gi|261403255|ref|YP_003247479.1| - 0.017 15.4 0.0 0.028 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|261403255|ref|YP_003247479.1| - 0.027 14.2 0.0 0.057 13.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|261403255|ref|YP_003247479.1| - 0.037 13.5 0.0 0.071 12.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.6 gi|261403255|ref|YP_003247479.1| - 0.055 13.2 0.0 0.079 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|261403255|ref|YP_003247479.1| - 0.059 12.9 0.0 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|261403255|ref|YP_003247479.1| - 0.064 12.9 0.0 0.18 11.5 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain DAP3 PF10236.9 gi|261403255|ref|YP_003247479.1| - 0.073 12.2 0.0 6.8 5.8 0.0 2.8 3 0 0 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 AAA_3 PF07726.11 gi|261403255|ref|YP_003247479.1| - 0.081 12.8 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|261403255|ref|YP_003247479.1| - 0.13 12.2 0.0 0.34 10.9 0.0 1.7 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SDH_sah PF01972.16 gi|261403256|ref|YP_003247480.1| - 7.5e-154 510.8 1.2 8.3e-154 510.7 1.2 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|261403256|ref|YP_003247480.1| - 9.3e-05 22.4 0.3 0.00031 20.7 0.1 1.8 1 1 0 2 2 2 1 Clp protease ECH_1 PF00378.20 gi|261403256|ref|YP_003247480.1| - 0.00058 19.3 0.0 0.00084 18.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|261403256|ref|YP_003247480.1| - 0.0016 18.4 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 Glyco_transf_5 PF08323.11 gi|261403256|ref|YP_003247480.1| - 0.05 13.3 0.0 0.073 12.8 0.0 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain DUF192 PF02643.15 gi|261403257|ref|YP_003247481.1| - 1.3e-13 50.9 0.0 1.5e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Peptidase_M20 PF01546.28 gi|261403258|ref|YP_003247482.1| - 2.5e-15 56.8 0.0 2.4e-14 53.5 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|261403258|ref|YP_003247482.1| - 2.6e-12 46.6 0.0 6.1e-12 45.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Ndc80_HEC PF03801.13 gi|261403258|ref|YP_003247482.1| - 0.071 12.7 0.9 2.8 7.5 0.4 2.4 2 0 0 2 2 2 0 HEC/Ndc80p family PNP_UDP_1 PF01048.20 gi|261403259|ref|YP_003247483.1| - 8.2e-42 143.1 0.0 1e-41 142.8 0.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Chorismate_bind PF00425.18 gi|261403260|ref|YP_003247484.1| - 4e-95 318.3 0.0 5.5e-95 317.8 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|261403260|ref|YP_003247484.1| - 4.5e-30 104.7 1.5 3.3e-28 98.7 0.0 2.6 2 1 0 2 2 2 2 Anthranilate synthase component I, N terminal region Cas_DxTHG PF09455.10 gi|261403261|ref|YP_003247485.1| - 1.2e-46 159.9 12.9 1.2e-46 159.9 12.9 2.1 2 0 0 2 2 2 1 CRISPR-associated (Cas) DxTHG family Destabilase PF05497.12 gi|261403261|ref|YP_003247485.1| - 0.18 12.2 2.7 0.99 9.8 0.1 2.5 2 0 0 2 2 2 0 Destabilase DNTTIP1_dimer PF18192.1 gi|261403261|ref|YP_003247485.1| - 5 7.5 9.3 4.1 7.8 0.3 3.9 4 0 0 4 4 4 0 DNTTIP1 dimerisation domain DAHP_snth_FXD PF18152.1 gi|261403262|ref|YP_003247486.1| - 0.16 11.8 0.1 0.27 11.1 0.1 1.3 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain Csm1_B PF18211.1 gi|261403263|ref|YP_003247487.1| - 1.3e-30 105.0 0.3 8.4e-27 92.9 0.1 3.3 3 0 0 3 3 3 2 Csm1 subunit domain B HD PF01966.22 gi|261403263|ref|YP_003247487.1| - 1.3e-07 31.8 0.5 1.1e-06 28.9 0.2 2.6 3 0 0 3 3 3 1 HD domain HD_6 PF18019.1 gi|261403263|ref|YP_003247487.1| - 0.00023 21.4 0.6 0.0092 16.1 0.0 2.4 1 1 1 2 2 2 1 HD domain EcoEI_R_C PF08463.10 gi|261403263|ref|YP_003247487.1| - 0.18 11.9 0.0 0.18 11.9 0.0 3.3 4 0 0 4 4 4 0 EcoEI R protein C-terminal Csm2_III-A PF03750.13 gi|261403264|ref|YP_003247488.1| - 4.2e-27 95.3 4.8 1e-26 94.1 4.8 1.6 1 1 0 1 1 1 1 Csm2 Type III-A Rgp1 PF08737.10 gi|261403264|ref|YP_003247488.1| - 0.009 15.2 0.7 0.011 14.9 0.7 1.2 1 0 0 1 1 1 1 Rgp1 RAMPs PF03787.15 gi|261403265|ref|YP_003247489.1| - 5.1e-18 65.9 3.0 7.6e-18 65.3 3.0 1.4 1 0 0 1 1 1 1 RAMP superfamily Csm4_C PF17953.1 gi|261403266|ref|YP_003247490.1| - 1.2e-12 47.5 0.0 4.9e-11 42.3 0.0 2.5 1 1 0 1 1 1 1 CRISPR Csm4 C-terminal domain RAMPs PF03787.15 gi|261403266|ref|YP_003247490.1| - 5.1e-09 36.5 9.4 5.1e-09 36.5 9.4 1.7 2 0 0 2 2 2 1 RAMP superfamily KELK PF15796.5 gi|261403266|ref|YP_003247490.1| - 2 8.9 6.0 0.61 10.6 2.4 2.1 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase RAMPs PF03787.15 gi|261403267|ref|YP_003247491.1| - 1.8e-17 64.1 6.6 3.1e-17 63.3 6.6 1.4 1 0 0 1 1 1 1 RAMP superfamily UDPG_MGDP_dh PF00984.19 gi|261403267|ref|YP_003247491.1| - 0.043 14.0 0.0 2.3 8.5 0.0 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Imm63 PF15599.6 gi|261403267|ref|YP_003247491.1| - 0.057 13.8 0.2 0.2 12.1 0.1 1.9 2 0 0 2 2 2 0 Immunity protein 63 TetR_C_17 PF17922.1 gi|261403267|ref|YP_003247491.1| - 0.19 11.8 3.1 7.8 6.7 0.7 2.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Cas_DxTHG PF09455.10 gi|261403268|ref|YP_003247492.1| - 5.4e-32 111.8 16.0 5.4e-32 111.8 16.0 1.9 2 0 0 2 2 2 1 CRISPR-associated (Cas) DxTHG family Com_YlbF PF06133.11 gi|261403268|ref|YP_003247492.1| - 0.32 11.6 0.0 0.32 11.6 0.0 3.8 4 1 0 4 4 4 0 Control of competence regulator ComK, YlbF/YmcA Peptidase_U32 PF01136.19 gi|261403269|ref|YP_003247493.1| - 4.4e-05 22.8 0.0 0.0016 17.6 0.0 2.1 2 0 0 2 2 2 2 Peptidase family U32 DUF5402 PF17393.2 gi|261403270|ref|YP_003247494.1| - 2e-50 169.7 0.8 2.2e-50 169.6 0.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5402) tRNA-synt_2d PF01409.20 gi|261403271|ref|YP_003247495.1| - 1.5e-65 221.1 0.0 4.6e-60 203.1 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SepRS_C PF18006.1 gi|261403271|ref|YP_003247495.1| - 1.8e-13 50.3 1.9 3.8e-13 49.3 1.9 1.6 1 0 0 1 1 1 1 O-phosphoseryl-tRNA synthetase C-terminal domain tRNA_synthFbeta PF17759.1 gi|261403271|ref|YP_003247495.1| - 2.3e-09 37.0 0.0 2.3e-06 27.2 0.0 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2b PF00587.25 gi|261403271|ref|YP_003247495.1| - 0.00053 20.0 0.1 0.0015 18.5 0.1 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2 PF00152.20 gi|261403271|ref|YP_003247495.1| - 0.035 13.2 0.2 3.4 6.6 0.0 3.0 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) ACT_6 PF13740.6 gi|261403272|ref|YP_003247496.1| - 8.3e-19 67.4 0.8 9.2e-19 67.2 0.8 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|261403272|ref|YP_003247496.1| - 1.8e-09 37.2 0.6 2.4e-09 36.8 0.6 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|261403272|ref|YP_003247496.1| - 2.6e-06 27.1 1.0 4.3e-06 26.4 1.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|261403272|ref|YP_003247496.1| - 2.2e-05 25.0 2.2 2.8e-05 24.6 2.2 1.2 1 0 0 1 1 1 1 ACT domain RNA_pol_Rpb1_5 PF04998.17 gi|261403272|ref|YP_003247496.1| - 0.43 10.0 1.7 0.48 9.8 1.7 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 5 POR PF01558.18 gi|261403273|ref|YP_003247497.1| - 5.5e-41 140.6 0.3 7.3e-41 140.2 0.3 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF1425 PF07233.12 gi|261403273|ref|YP_003247497.1| - 0.097 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1425) Fer4 PF00037.27 gi|261403274|ref|YP_003247498.1| - 4.1e-15 54.9 15.2 2.1e-08 33.6 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261403274|ref|YP_003247498.1| - 2.3e-11 43.6 10.2 3e-11 43.3 10.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403274|ref|YP_003247498.1| - 1.9e-10 40.7 31.3 1.5e-06 28.3 11.7 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403274|ref|YP_003247498.1| - 3.2e-10 39.6 14.1 3.6e-05 23.7 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403274|ref|YP_003247498.1| - 1.6e-09 38.2 21.1 8.8e-08 32.6 10.8 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403274|ref|YP_003247498.1| - 3.8e-09 36.5 11.5 0.00011 22.3 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403274|ref|YP_003247498.1| - 9.3e-09 36.1 10.1 0.00012 22.9 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261403274|ref|YP_003247498.1| - 2.1e-07 30.6 9.4 0.0025 17.8 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261403274|ref|YP_003247498.1| - 3.8e-05 24.2 7.0 0.039 14.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403274|ref|YP_003247498.1| - 0.0012 19.2 12.8 0.014 15.9 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403274|ref|YP_003247498.1| - 0.0026 18.2 12.4 0.12 12.8 2.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261403274|ref|YP_003247498.1| - 0.012 16.1 11.0 0.055 14.0 1.0 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I IceA2 PF05862.11 gi|261403274|ref|YP_003247498.1| - 0.039 13.9 0.1 0.078 12.9 0.1 1.5 1 0 0 1 1 1 0 Helicobacter pylori IceA2 protein Fer4_15 PF13459.6 gi|261403274|ref|YP_003247498.1| - 0.15 12.8 11.3 1.4 9.7 3.2 2.6 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|261403274|ref|YP_003247498.1| - 0.22 12.5 16.4 1.7 9.8 3.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261403274|ref|YP_003247498.1| - 0.37 11.7 10.0 3.9 8.4 2.1 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|261403275|ref|YP_003247499.1| - 6e-83 278.1 0.6 7.7e-83 277.8 0.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|261403275|ref|YP_003247499.1| - 5.7e-35 119.7 0.0 1.1e-34 118.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|261403275|ref|YP_003247499.1| - 1.9e-08 34.3 0.1 8.2e-08 32.2 0.0 2.1 3 0 0 3 3 3 1 Transketolase, C-terminal domain MannoseP_isomer PF01050.18 gi|261403275|ref|YP_003247499.1| - 0.019 14.9 0.0 0.57 10.1 0.0 2.4 2 0 0 2 2 2 0 Mannose-6-phosphate isomerase DUF1667 PF07892.11 gi|261403275|ref|YP_003247499.1| - 0.028 14.5 0.1 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1667) OxoGdeHyase_C PF16870.5 gi|261403275|ref|YP_003247499.1| - 0.11 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal TPP_enzyme_C PF02775.21 gi|261403276|ref|YP_003247500.1| - 4.2e-28 98.0 0.0 6.1e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|261403276|ref|YP_003247500.1| - 0.012 14.9 0.1 0.017 14.3 0.1 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase HTH_38 PF13936.6 gi|261403276|ref|YP_003247500.1| - 0.081 12.7 1.4 0.095 12.5 0.3 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Fer4_11 PF13247.6 gi|261403277|ref|YP_003247501.1| - 3.4e-11 43.2 14.9 3.4e-11 43.2 14.9 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403277|ref|YP_003247501.1| - 3.9e-11 43.4 28.1 0.00017 22.1 0.7 3.5 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403277|ref|YP_003247501.1| - 9.5e-10 38.0 28.7 3.6e-06 26.8 0.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|261403277|ref|YP_003247501.1| - 1.1e-09 37.7 2.7 1.1e-09 37.7 2.7 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403277|ref|YP_003247501.1| - 1.9e-09 37.2 39.5 1.2e-06 28.3 2.1 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261403277|ref|YP_003247501.1| - 2e-08 34.2 30.3 3.6e-05 23.8 1.0 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403277|ref|YP_003247501.1| - 9.8e-08 32.0 34.3 0.00016 21.7 11.4 3.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403277|ref|YP_003247501.1| - 3.6e-07 30.3 33.3 6.2e-05 23.1 9.2 3.3 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403277|ref|YP_003247501.1| - 1e-06 29.2 45.9 0.0034 18.2 5.0 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261403277|ref|YP_003247501.1| - 1.9e-06 28.7 26.7 0.0033 18.3 3.2 4.2 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|261403277|ref|YP_003247501.1| - 0.0015 18.9 33.9 0.0077 16.7 1.7 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403277|ref|YP_003247501.1| - 0.23 11.9 33.2 25 5.4 11.1 4.1 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403277|ref|YP_003247501.1| - 0.27 11.8 31.0 0.19 12.3 1.4 4.6 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261403278|ref|YP_003247502.1| - 1.1e-17 63.0 41.7 1.6e-10 40.3 4.2 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403278|ref|YP_003247502.1| - 1.2e-17 63.2 36.2 3.7e-08 33.1 2.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261403278|ref|YP_003247502.1| - 3.2e-13 48.9 31.2 1.2e-05 25.1 1.5 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261403278|ref|YP_003247502.1| - 2.2e-12 47.0 25.2 1.2e-06 28.6 10.1 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403278|ref|YP_003247502.1| - 9.2e-12 45.4 33.0 2.8e-06 27.8 12.0 3.8 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403278|ref|YP_003247502.1| - 9.5e-12 44.9 32.2 4.7e-08 33.0 11.4 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403278|ref|YP_003247502.1| - 6.8e-11 42.3 39.5 0.0027 18.5 5.0 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.6 gi|261403278|ref|YP_003247502.1| - 1.8e-10 40.8 12.4 1.8e-10 40.8 12.4 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403278|ref|YP_003247502.1| - 2.7e-10 41.0 27.8 0.017 16.0 4.3 4.2 2 1 2 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|261403278|ref|YP_003247502.1| - 3.1e-10 39.8 33.2 0.00088 19.6 1.9 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403278|ref|YP_003247502.1| - 1.7e-08 34.4 33.3 0.0003 20.8 12.4 3.6 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403278|ref|YP_003247502.1| - 0.00019 21.8 30.5 0.037 14.5 2.8 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403278|ref|YP_003247502.1| - 0.00073 20.0 32.4 0.022 15.3 2.0 4.3 2 1 4 6 6 6 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261403278|ref|YP_003247502.1| - 0.0021 18.2 26.6 0.14 12.4 8.8 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261403278|ref|YP_003247502.1| - 0.056 14.0 1.4 0.056 14.0 1.4 4.5 4 1 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|261403279|ref|YP_003247503.1| - 6.9e-94 315.2 0.1 1.2e-93 314.5 0.0 1.4 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|261403279|ref|YP_003247503.1| - 7.4e-29 100.0 0.0 1.3e-28 99.2 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|261403279|ref|YP_003247503.1| - 6.4e-20 70.9 4.0 1.4e-19 69.8 4.0 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain SIS PF01380.22 gi|261403279|ref|YP_003247503.1| - 0.0031 17.4 0.4 0.0064 16.3 0.3 1.5 1 1 0 1 1 1 1 SIS domain CDC48_N PF02359.18 gi|261403279|ref|YP_003247503.1| - 0.076 13.2 0.3 0.33 11.2 0.1 2.0 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Methyltransf_11 PF08241.12 gi|261403280|ref|YP_003247504.1| - 8.2e-22 77.7 0.0 1.4e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403280|ref|YP_003247504.1| - 2.3e-15 57.0 0.0 4.3e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403280|ref|YP_003247504.1| - 6.4e-15 55.4 0.0 9e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|261403280|ref|YP_003247504.1| - 9.6e-12 44.9 0.5 2.2e-11 43.8 0.5 1.6 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|261403280|ref|YP_003247504.1| - 2.3e-10 40.2 1.3 1.4e-09 37.6 0.1 2.1 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|261403280|ref|YP_003247504.1| - 2.6e-10 40.9 0.0 7e-10 39.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|261403280|ref|YP_003247504.1| - 3.9e-05 23.3 0.0 9.9e-05 22.0 0.0 1.8 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|261403280|ref|YP_003247504.1| - 0.00026 20.9 0.2 0.00054 19.9 0.1 1.6 1 1 1 2 2 2 1 Hypothetical methyltransferase N6_N4_Mtase PF01555.18 gi|261403280|ref|YP_003247504.1| - 0.00061 19.6 1.2 0.0019 18.0 0.2 2.1 2 0 0 2 2 2 1 DNA methylase DREV PF05219.12 gi|261403280|ref|YP_003247504.1| - 0.00093 18.4 0.0 0.0013 17.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase ADH_zinc_N PF00107.26 gi|261403280|ref|YP_003247504.1| - 0.0021 18.0 0.0 0.0061 16.5 0.0 1.7 1 1 0 2 2 2 1 Zinc-binding dehydrogenase PTS_IIB PF02302.17 gi|261403280|ref|YP_003247504.1| - 0.014 16.1 2.1 0.029 15.1 0.4 2.1 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Bin3 PF06859.12 gi|261403280|ref|YP_003247504.1| - 0.035 14.7 0.3 0.063 13.9 0.3 1.5 1 0 0 1 1 1 0 Bicoid-interacting protein 3 (Bin3) IF2_N PF04760.15 gi|261403280|ref|YP_003247504.1| - 0.036 13.9 0.2 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Methyltransf_9 PF08003.11 gi|261403280|ref|YP_003247504.1| - 0.071 12.0 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Ferritin PF00210.24 gi|261403280|ref|YP_003247504.1| - 0.078 12.9 0.4 0.23 11.4 0.3 1.7 1 1 1 2 2 2 0 Ferritin-like domain DEAD PF00270.29 gi|261403281|ref|YP_003247505.1| - 2.2e-25 89.4 0.0 6.2e-25 88.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Intein_splicing PF14890.6 gi|261403281|ref|YP_003247505.1| - 4.3e-16 59.1 4.8 4.3e-16 59.1 4.8 2.1 2 0 0 2 2 2 1 Intein splicing domain ResIII PF04851.15 gi|261403281|ref|YP_003247505.1| - 2e-13 50.7 0.8 6.2e-12 45.9 0.0 2.9 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit LAGLIDADG_3 PF14528.6 gi|261403281|ref|YP_003247505.1| - 1.8e-08 34.6 2.4 1.1e-07 32.0 0.3 3.3 3 0 0 3 3 3 1 LAGLIDADG-like domain HHH_5 PF14520.6 gi|261403281|ref|YP_003247505.1| - 2.3e-07 31.3 1.1 9.1e-07 29.4 0.3 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|261403281|ref|YP_003247505.1| - 2.2e-05 24.2 0.0 0.00039 20.2 0.0 2.8 2 1 1 3 3 3 1 Fingers domain of DNA polymerase lambda Helicase_C PF00271.31 gi|261403281|ref|YP_003247505.1| - 0.00052 20.3 0.0 2.9 8.2 0.1 3.9 2 1 0 2 2 2 2 Helicase conserved C-terminal domain Tubulin_2 PF13809.6 gi|261403281|ref|YP_003247505.1| - 0.00072 18.8 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 Tubulin like Hint PF01079.20 gi|261403281|ref|YP_003247505.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 Hint module Glyco_hydro_49 PF03718.13 gi|261403281|ref|YP_003247505.1| - 0.025 14.6 0.4 1.5 8.9 0.1 2.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 49 Homoserine_dh PF00742.19 gi|261403282|ref|YP_003247506.1| - 1.8e-56 190.7 3.3 3.5e-56 189.9 0.5 2.3 2 1 1 3 3 3 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|261403282|ref|YP_003247506.1| - 3e-15 56.9 0.5 1.2e-14 55.0 0.1 2.0 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|261403282|ref|YP_003247506.1| - 9.4e-08 32.1 1.4 4.4e-07 29.9 0.7 2.2 1 1 1 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Gp_dh_N PF00044.24 gi|261403282|ref|YP_003247506.1| - 0.0089 16.4 0.4 0.054 13.8 0.4 2.3 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|261403282|ref|YP_003247506.1| - 0.012 15.9 0.1 0.025 14.8 0.1 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|261403282|ref|YP_003247506.1| - 0.019 15.8 0.1 0.05 14.4 0.1 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ACT PF01842.25 gi|261403283|ref|YP_003247507.1| - 3.8e-10 39.4 1.2 2.1e-09 37.0 0.1 2.5 2 1 1 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|261403283|ref|YP_003247507.1| - 7.6e-07 29.6 0.1 2.2e-06 28.2 0.2 1.7 2 0 0 2 2 2 1 ACT domain Rad10 PF03834.14 gi|261403283|ref|YP_003247507.1| - 0.057 13.4 0.0 6 6.9 0.0 2.1 1 1 1 2 2 2 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Saccharop_dh_N PF04455.12 gi|261403283|ref|YP_003247507.1| - 0.09 13.2 1.6 1.3 9.5 0.1 2.6 1 1 2 3 3 3 0 LOR/SDH bifunctional enzyme conserved region CarS-like PF01864.17 gi|261403284|ref|YP_003247508.1| - 1.3e-87 292.3 10.6 1.4e-87 292.1 10.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|261403284|ref|YP_003247508.1| - 0.00026 20.9 4.0 0.00026 20.9 4.0 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family Gly-zipper_Omp PF13488.6 gi|261403284|ref|YP_003247508.1| - 0.66 10.0 4.8 8.4 6.5 0.0 2.9 3 0 0 3 3 3 0 Glycine zipper Rick_17kDa_Anti PF05433.15 gi|261403284|ref|YP_003247508.1| - 6.6 6.7 6.7 14 5.6 0.3 2.8 3 0 0 3 3 3 0 Glycine zipper 2TM domain DUF92 PF01940.16 gi|261403284|ref|YP_003247508.1| - 8.9 5.7 9.3 0.63 9.4 2.3 2.0 2 0 0 2 2 2 0 Integral membrane protein DUF92 PAPS_reduct PF01507.19 gi|261403285|ref|YP_003247509.1| - 4.5e-05 23.6 0.0 6.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|261403285|ref|YP_003247509.1| - 0.00057 19.1 0.0 0.0042 16.2 0.0 2.0 2 0 0 2 2 2 1 NAD synthase ATP_bind_3 PF01171.20 gi|261403285|ref|YP_003247509.1| - 0.0019 18.0 0.0 0.0043 16.8 0.0 1.7 1 1 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|261403285|ref|YP_003247509.1| - 0.012 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|261403285|ref|YP_003247509.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 Diphthamide synthase tRNA_Me_trans PF03054.16 gi|261403285|ref|YP_003247509.1| - 0.021 13.7 0.0 0.034 12.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Dynamin_M PF01031.20 gi|261403285|ref|YP_003247509.1| - 0.051 12.8 0.1 0.15 11.3 0.0 1.7 2 0 0 2 2 2 0 Dynamin central region Arginosuc_synth PF00764.19 gi|261403285|ref|YP_003247509.1| - 0.15 11.3 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase SOR_SNZ PF01680.17 gi|261403286|ref|YP_003247510.1| - 2.2e-100 334.6 7.7 7e-98 326.5 5.9 2.2 1 1 1 2 2 2 2 SOR/SNZ family ThiG PF05690.14 gi|261403286|ref|YP_003247510.1| - 2.8e-09 36.7 4.4 2.5e-05 23.7 0.0 2.7 3 0 0 3 3 3 2 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|261403286|ref|YP_003247510.1| - 5.3e-05 22.5 0.6 0.085 12.0 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase Dus PF01207.17 gi|261403286|ref|YP_003247510.1| - 9.1e-05 21.7 0.2 0.31 10.1 0.0 2.5 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|261403286|ref|YP_003247510.1| - 9.3e-05 22.0 2.4 0.077 12.4 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase OMPdecase PF00215.24 gi|261403286|ref|YP_003247510.1| - 0.00079 19.1 0.0 0.0017 18.0 0.0 1.6 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Trp_syntA PF00290.20 gi|261403286|ref|YP_003247510.1| - 0.025 13.4 0.0 0.049 12.5 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|261403286|ref|YP_003247510.1| - 0.034 13.6 1.6 1.9 7.9 0.1 2.9 2 2 1 3 3 3 0 Histidine biosynthesis protein TetR_C_27 PF17935.1 gi|261403286|ref|YP_003247510.1| - 0.051 13.6 0.0 0.19 11.8 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peptidase_S66C PF17676.1 gi|261403286|ref|YP_003247510.1| - 0.066 13.8 0.0 0.17 12.4 0.0 1.7 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain DUF389 PF04087.14 gi|261403287|ref|YP_003247511.1| - 3.7e-32 111.3 17.1 8e-32 110.2 17.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF389) MRAP PF15183.6 gi|261403287|ref|YP_003247511.1| - 0.011 15.7 1.5 0.037 14.0 1.5 1.9 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family PmbA_TldD PF01523.16 gi|261403288|ref|YP_003247512.1| - 1e-72 245.4 1.4 1.4e-72 244.9 1.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3566 PF12089.8 gi|261403289|ref|YP_003247513.1| - 0.05 14.0 15.6 0.28 11.6 15.6 2.1 1 1 0 1 1 1 0 Transmembrane domain of unknown function (DUF3566) MpPF26 PF07666.11 gi|261403289|ref|YP_003247513.1| - 0.12 12.5 9.5 0.17 12.0 9.5 1.3 1 0 0 1 1 1 0 M penetrans paralogue family 26 DUF2208 PF09973.9 gi|261403289|ref|YP_003247513.1| - 0.46 10.1 7.9 0.29 10.7 6.1 1.5 1 1 1 2 2 2 0 Predicted membrane protein (DUF2208) DUF5326 PF17260.2 gi|261403289|ref|YP_003247513.1| - 2.6 8.3 15.5 3.4 7.9 2.7 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5326) Tim17 PF02466.19 gi|261403289|ref|YP_003247513.1| - 4.9 7.6 9.7 0.76 10.2 1.4 2.2 1 1 1 2 2 2 0 Tim17/Tim22/Tim23/Pmp24 family TruD PF01142.18 gi|261403290|ref|YP_003247514.1| - 1.7e-77 261.0 0.1 2.1e-77 260.7 0.1 1.1 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF4211 PF13926.6 gi|261403290|ref|YP_003247514.1| - 0.077 13.1 0.7 0.17 12.0 0.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4211) SWIB PF02201.18 gi|261403290|ref|YP_003247514.1| - 0.49 10.3 4.1 2.1 8.3 1.8 2.6 1 1 1 2 2 2 0 SWIB/MDM2 domain RRT14 PF17075.5 gi|261403290|ref|YP_003247514.1| - 7 6.7 13.2 20 5.3 2.1 3.2 3 0 0 3 3 3 0 Regular of rDNA transcription protein 14 DHODB_Fe-S_bind PF10418.9 gi|261403291|ref|YP_003247515.1| - 1.5e-13 50.3 9.1 3.6e-13 49.1 9.1 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.21 gi|261403291|ref|YP_003247515.1| - 8.3e-06 26.4 0.0 3.7e-05 24.3 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.12 gi|261403291|ref|YP_003247515.1| - 0.027 14.6 0.3 1.4 9.0 0.1 2.3 1 1 0 2 2 2 0 Ferric reductase NAD binding domain LAMTOR5 PF16672.5 gi|261403291|ref|YP_003247515.1| - 0.064 13.2 0.4 0.13 12.2 0.4 1.5 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 FAD_binding_6 PF00970.24 gi|261403291|ref|YP_003247515.1| - 0.085 13.2 0.0 0.34 11.3 0.0 2.0 1 1 0 1 1 1 0 Oxidoreductase FAD-binding domain Fae PF08714.11 gi|261403292|ref|YP_003247516.1| - 4.5e-32 111.2 0.3 8.6e-32 110.3 0.1 1.6 2 0 0 2 2 2 1 Formaldehyde-activating enzyme (Fae) OMPdecase PF00215.24 gi|261403292|ref|YP_003247516.1| - 2.5e-20 73.1 0.2 5.1e-19 68.8 0.2 2.1 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family N6_N4_Mtase PF01555.18 gi|261403293|ref|YP_003247517.1| - 2.3e-34 119.1 0.0 1.1e-14 54.7 0.1 3.1 2 1 1 3 3 3 3 DNA methylase Methyltransf_15 PF09445.10 gi|261403293|ref|YP_003247517.1| - 7.3e-05 22.4 0.7 0.063 12.9 0.1 2.7 1 1 0 2 2 2 2 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|261403293|ref|YP_003247517.1| - 0.007 16.1 0.4 0.66 9.6 0.1 2.8 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 CDC48_2 PF02933.17 gi|261403293|ref|YP_003247517.1| - 0.094 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 RE_TdeIII PF09520.10 gi|261403294|ref|YP_003247518.1| - 8.3e-55 186.1 3.8 1.2e-54 185.5 3.8 1.3 1 0 0 1 1 1 1 Type II restriction endonuclease, TdeIII RE_EcoO109I PF14511.6 gi|261403294|ref|YP_003247518.1| - 0.028 14.0 1.4 0.75 9.4 0.1 2.4 1 1 1 2 2 2 0 Type II restriction endonuclease EcoO109I DUF123 PF01986.16 gi|261403295|ref|YP_003247519.1| - 2.9e-29 101.4 1.4 5.9e-29 100.4 0.2 2.1 3 0 0 3 3 3 1 Domain of unknown function DUF123 HhH-GPD PF00730.25 gi|261403295|ref|YP_003247519.1| - 2.6e-26 92.2 0.0 4.8e-26 91.3 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|261403295|ref|YP_003247519.1| - 5e-10 38.7 0.1 1.7e-09 37.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|261403295|ref|YP_003247519.1| - 0.00087 19.8 0.4 0.39 11.3 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|261403295|ref|YP_003247519.1| - 0.011 15.8 0.1 7.7 6.7 0.1 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif PDH PF02153.17 gi|261403296|ref|YP_003247520.1| - 1.1e-85 286.7 0.8 1.7e-85 286.1 0.4 1.5 2 0 0 2 2 2 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|261403296|ref|YP_003247520.1| - 1e-12 48.5 0.3 3.3e-12 46.8 0.3 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|261403296|ref|YP_003247520.1| - 1.4e-08 35.1 0.1 3.1e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|261403296|ref|YP_003247520.1| - 5.1e-07 29.4 0.2 1.1e-06 28.3 0.2 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FDX-ACB PF03147.14 gi|261403296|ref|YP_003247520.1| - 1.2e-05 25.6 0.1 7.8e-05 23.0 0.1 2.4 1 1 1 2 2 2 1 Ferredoxin-fold anticodon binding domain adh_short PF00106.25 gi|261403296|ref|YP_003247520.1| - 4e-05 23.2 0.1 0.00038 20.0 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase Semialdhyde_dh PF01118.24 gi|261403296|ref|YP_003247520.1| - 0.0011 19.4 0.2 0.0059 17.0 0.1 2.3 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain TIR_2 PF13676.6 gi|261403296|ref|YP_003247520.1| - 0.0035 17.9 0.0 1.2 9.7 0.0 2.9 3 0 0 3 3 2 1 TIR domain NAD_Gly3P_dh_N PF01210.23 gi|261403296|ref|YP_003247520.1| - 0.012 15.6 0.6 0.035 14.1 0.3 1.9 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|261403296|ref|YP_003247520.1| - 0.012 15.2 0.1 0.028 14.1 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_trans_4_2 PF13477.6 gi|261403296|ref|YP_003247520.1| - 0.023 14.7 0.1 6 6.9 0.0 2.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like DUF2642 PF10842.8 gi|261403296|ref|YP_003247520.1| - 0.033 14.0 0.1 0.16 11.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2642) 2-Hacid_dh_C PF02826.19 gi|261403296|ref|YP_003247520.1| - 0.044 13.1 0.1 0.27 10.6 0.0 2.3 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.10 gi|261403296|ref|YP_003247520.1| - 0.047 13.6 0.0 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 KR domain TFIIE_alpha PF02002.17 gi|261403296|ref|YP_003247520.1| - 0.29 11.0 7.1 0.24 11.3 2.3 2.6 2 1 0 2 2 2 0 TFIIE alpha subunit TPP_enzyme_C PF02775.21 gi|261403297|ref|YP_003247521.1| - 2e-21 76.3 0.0 3e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF3881 PF12997.7 gi|261403297|ref|YP_003247521.1| - 0.04 13.2 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3881) EMG1 PF03587.14 gi|261403298|ref|YP_003247522.1| - 1.9e-42 145.1 0.1 2.3e-42 144.8 0.1 1.1 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Aconitase_C PF00694.19 gi|261403299|ref|YP_003247523.1| - 2.9e-21 76.2 0.0 4e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|261403299|ref|YP_003247523.1| - 0.00021 21.0 0.3 0.0013 18.4 0.3 2.0 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus CdhC PF03598.15 gi|261403300|ref|YP_003247524.1| - 6.9e-64 214.4 0.3 1.4e-63 213.4 0.3 1.6 1 0 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase complex beta subunit VAPB_antitox PF02697.14 gi|261403300|ref|YP_003247524.1| - 1.1 10.0 11.1 7 7.5 0.7 3.5 3 0 0 3 3 3 0 Putative antitoxin Fer4_11 PF13247.6 gi|261403301|ref|YP_003247525.1| - 2.8e-11 43.4 13.2 2.8e-11 43.4 13.2 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261403301|ref|YP_003247525.1| - 3.1e-11 42.6 39.3 5.9e-08 32.2 4.6 5.9 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261403301|ref|YP_003247525.1| - 9.4e-09 35.3 23.7 1.6e-05 24.9 10.3 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403301|ref|YP_003247525.1| - 1.2e-08 35.4 28.1 0.025 15.2 11.2 4.1 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403301|ref|YP_003247525.1| - 3.7e-07 30.2 32.3 0.0016 18.5 11.5 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403301|ref|YP_003247525.1| - 9.2e-07 28.7 39.5 9.2e-05 22.4 4.4 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261403301|ref|YP_003247525.1| - 4.7e-05 23.2 31.4 0.0011 18.9 2.3 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261403301|ref|YP_003247525.1| - 0.00041 21.2 30.9 0.31 12.0 1.3 4.6 4 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|261403301|ref|YP_003247525.1| - 0.0056 16.8 34.4 0.032 14.4 14.4 3.7 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403301|ref|YP_003247525.1| - 0.0073 16.7 1.2 0.0073 16.7 1.2 5.0 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|261403301|ref|YP_003247525.1| - 0.099 13.6 36.7 1.3 10.1 6.3 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403301|ref|YP_003247525.1| - 8.4 6.9 31.9 3.8 8.0 9.8 4.2 2 2 1 3 3 3 0 4Fe-4S dicluster domain CO_dh PF02552.16 gi|261403302|ref|YP_003247526.1| - 3.8e-39 134.1 6.6 1.5e-38 132.2 6.6 1.7 1 1 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit TPP_enzyme_M PF00205.22 gi|261403302|ref|YP_003247526.1| - 0.00088 19.0 0.0 0.007 16.1 0.0 1.9 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Prismane PF03063.20 gi|261403303|ref|YP_003247527.1| - 7.8e-98 328.4 12.6 1.3e-84 284.8 0.0 2.0 1 1 1 2 2 2 2 Prismane/CO dehydrogenase family Fer4_7 PF12838.7 gi|261403303|ref|YP_003247527.1| - 8.5e-05 23.1 13.7 0.00066 20.2 7.7 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403303|ref|YP_003247527.1| - 0.00037 20.6 7.3 0.00037 20.6 7.3 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403303|ref|YP_003247527.1| - 0.00045 20.3 9.6 0.00045 20.3 9.6 4.0 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403303|ref|YP_003247527.1| - 0.004 17.7 19.0 0.0084 16.6 0.8 4.4 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403303|ref|YP_003247527.1| - 0.016 15.6 24.5 0.051 14.0 13.0 4.1 3 1 2 5 5 5 0 4Fe-4S dicluster domain CODH_A_N PF18537.1 gi|261403303|ref|YP_003247527.1| - 0.086 12.9 0.0 0.51 10.4 0.0 2.2 2 0 0 2 2 2 0 Carbon monoxide dehydrogenase subunit alpha N-terminal domain Fer4_13 PF13370.6 gi|261403303|ref|YP_003247527.1| - 0.12 12.9 0.3 0.12 12.9 0.3 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|261403303|ref|YP_003247527.1| - 1.4 9.9 22.0 0.6 11.1 0.8 4.4 5 0 0 5 5 5 0 4Fe-4S double cluster binding domain VWA_2 PF13519.6 gi|261403304|ref|YP_003247528.1| - 5.9e-06 26.9 0.0 4.7e-05 24.0 0.0 2.3 2 1 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.9 gi|261403304|ref|YP_003247528.1| - 0.00063 19.9 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.14 gi|261403304|ref|YP_003247528.1| - 0.0022 17.4 0.0 0.0033 16.8 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|261403304|ref|YP_003247528.1| - 0.07 13.1 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain Arm PF00514.23 gi|261403305|ref|YP_003247529.1| - 0.00027 20.8 0.0 0.0031 17.5 0.0 2.7 3 0 0 3 3 3 1 Armadillo/beta-catenin-like repeat ToxS PF17323.2 gi|261403305|ref|YP_003247529.1| - 0.0039 16.9 0.6 0.019 14.6 0.1 2.0 2 0 0 2 2 2 1 Trans-membrane regulatory protein ToxS HEAT_2 PF13646.6 gi|261403305|ref|YP_003247529.1| - 0.016 15.6 0.0 0.41 11.1 0.0 2.2 2 1 1 3 3 3 0 HEAT repeats DUF2119 PF09892.9 gi|261403305|ref|YP_003247529.1| - 0.077 12.4 3.2 0.26 10.7 0.5 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) Cnd1 PF12717.7 gi|261403305|ref|YP_003247529.1| - 0.087 12.9 3.9 5.7 7.0 0.1 2.8 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 SapB_2 PF03489.17 gi|261403305|ref|YP_003247529.1| - 0.097 12.8 0.6 1.9 8.7 0.1 3.1 2 1 1 3 3 3 0 Saposin-like type B, region 2 Inhibitor_I29 PF08246.12 gi|261403305|ref|YP_003247529.1| - 0.097 13.1 2.9 1.2 9.6 0.1 2.5 2 1 0 2 2 2 0 Cathepsin propeptide inhibitor domain (I29) HEAT PF02985.22 gi|261403305|ref|YP_003247529.1| - 0.16 12.3 0.0 0.87 10.0 0.0 2.2 1 0 0 1 1 1 0 HEAT repeat AAA_5 PF07728.14 gi|261403306|ref|YP_003247530.1| - 1.2e-25 90.1 0.0 2.8e-25 88.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|261403306|ref|YP_003247530.1| - 1.1e-18 66.9 1.1 1.1e-18 66.9 1.1 3.2 3 0 0 3 3 3 1 AAA lid domain AAA PF00004.29 gi|261403306|ref|YP_003247530.1| - 0.00022 21.7 0.4 0.00071 20.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|261403306|ref|YP_003247530.1| - 0.00038 19.6 0.0 0.0017 17.5 0.0 2.0 1 1 1 2 2 2 1 MCM P-loop domain AAA_3 PF07726.11 gi|261403306|ref|YP_003247530.1| - 0.00055 19.8 0.0 0.001 19.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|261403306|ref|YP_003247530.1| - 0.0021 17.8 0.0 0.0042 16.8 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|261403306|ref|YP_003247530.1| - 0.0026 17.7 0.4 0.013 15.4 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase Viral_helicase1 PF01443.18 gi|261403306|ref|YP_003247530.1| - 0.0095 15.7 0.0 0.024 14.4 0.0 1.6 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|261403306|ref|YP_003247530.1| - 0.017 15.5 0.0 0.038 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|261403306|ref|YP_003247530.1| - 0.026 14.0 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|261403306|ref|YP_003247530.1| - 0.14 11.9 0.9 1.2 8.8 0.0 2.8 4 1 1 5 5 5 0 Holliday junction DNA helicase RuvB P-loop domain RHH_1 PF01402.21 gi|261403307|ref|YP_003247531.1| - 8.9e-10 38.2 2.7 2e-09 37.0 2.7 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|261403307|ref|YP_003247531.1| - 1.5e-08 34.7 0.1 2.3e-08 34.1 0.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain HicB_lk_antitox PF15919.5 gi|261403307|ref|YP_003247531.1| - 0.0024 18.0 0.4 0.021 14.9 0.1 2.1 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system Toxin_15 PF07906.13 gi|261403307|ref|YP_003247531.1| - 0.0031 17.1 1.0 0.0039 16.8 1.0 1.1 1 0 0 1 1 1 1 ShET2 enterotoxin, N-terminal region RHH_3 PF12651.7 gi|261403307|ref|YP_003247531.1| - 0.0031 17.4 5.4 0.0047 16.9 4.4 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix domain DUF956 PF06115.11 gi|261403307|ref|YP_003247531.1| - 0.044 13.5 0.8 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF956) MCR_beta PF02241.18 gi|261403308|ref|YP_003247532.1| - 1.6e-136 453.8 4.7 2e-136 453.4 4.7 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, C-terminal domain MCR_beta_N PF02783.15 gi|261403308|ref|YP_003247532.1| - 1.4e-82 275.8 0.1 2.6e-82 274.9 0.1 1.5 1 0 0 1 1 1 1 Methyl-coenzyme M reductase beta subunit, N-terminal domain DUF4147 PF13660.6 gi|261403308|ref|YP_003247532.1| - 0.0011 18.5 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MCR_gamma PF02240.16 gi|261403309|ref|YP_003247533.1| - 3.5e-132 439.1 0.3 4e-132 438.9 0.3 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase gamma subunit MCR_alpha_N PF02745.15 gi|261403310|ref|YP_003247534.1| - 2.9e-150 499.0 0.0 3.8e-150 498.7 0.0 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, N-terminal domain MCR_alpha PF02249.17 gi|261403310|ref|YP_003247534.1| - 5.9e-69 230.4 4.3 1.4e-68 229.2 4.3 1.7 1 0 0 1 1 1 1 Methyl-coenzyme M reductase alpha subunit, C-terminal domain MCR_beta_N PF02783.15 gi|261403310|ref|YP_003247534.1| - 0.056 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain MCR_D PF02505.14 gi|261403311|ref|YP_003247535.1| - 9.7e-56 187.6 0.7 1.1e-55 187.4 0.7 1.0 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein D EIF_2_alpha PF07541.12 gi|261403312|ref|YP_003247536.1| - 6.3e-28 97.2 1.5 6.7e-28 97.1 0.4 1.6 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|261403312|ref|YP_003247536.1| - 4.9e-18 65.2 1.4 4.9e-18 65.2 1.4 1.9 2 0 0 2 2 2 1 S1 RNA binding domain EXOSC1 PF10447.9 gi|261403312|ref|YP_003247536.1| - 0.00055 20.5 0.5 0.0044 17.6 0.2 2.5 2 1 1 3 3 3 1 Exosome component EXOSC1/CSL4 CwfJ_C_2 PF04676.14 gi|261403312|ref|YP_003247536.1| - 0.0074 17.1 0.1 0.017 16.0 0.1 1.6 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 2 Carbpep_Y_N PF05388.11 gi|261403312|ref|YP_003247536.1| - 0.22 12.1 1.2 1.1 9.8 0.2 2.2 1 1 1 2 2 2 0 Carboxypeptidase Y pro-peptide Nop10p PF04135.12 gi|261403313|ref|YP_003247537.1| - 1.5e-19 69.7 4.1 1.8e-19 69.5 4.1 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.15 gi|261403313|ref|YP_003247537.1| - 0.0034 16.9 1.6 0.0045 16.5 1.6 1.2 1 0 0 1 1 1 1 RecR protein TackOD1 PF18551.1 gi|261403313|ref|YP_003247537.1| - 0.0091 15.7 1.9 0.012 15.2 1.9 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 PolC_DP2 PF03833.13 gi|261403313|ref|YP_003247537.1| - 0.016 13.1 0.2 0.016 13.1 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|261403313|ref|YP_003247537.1| - 0.83 9.1 5.4 5.5 6.6 5.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|261403313|ref|YP_003247537.1| - 0.99 9.0 5.6 30 4.2 0.7 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|261403313|ref|YP_003247537.1| - 1.1 9.4 7.5 6.2 7.0 1.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.6 gi|261403313|ref|YP_003247537.1| - 1.2 8.5 6.8 3.4 7.1 0.4 2.2 1 1 2 3 3 3 0 Transcription factor zinc-finger zf_C2H2_10 PF18414.1 gi|261403313|ref|YP_003247537.1| - 1.4 8.5 7.3 1.4 8.5 1.6 2.4 1 1 1 2 2 2 0 C2H2 type zinc-finger zf-ACC PF17848.1 gi|261403313|ref|YP_003247537.1| - 4.7 7.4 8.6 5.7 7.1 0.4 2.8 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain Radical_SAM PF04055.21 gi|261403314|ref|YP_003247538.1| - 8.5e-19 68.5 0.1 1.7e-18 67.5 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|261403314|ref|YP_003247538.1| - 3e-05 24.0 0.0 0.00043 20.3 0.0 2.2 2 0 0 2 2 2 1 B12 binding domain MJ1316 PF04457.12 gi|261403315|ref|YP_003247539.1| - 5.3e-14 52.7 0.1 5.8e-14 52.6 0.1 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain CLP1_P PF16575.5 gi|261403316|ref|YP_003247540.1| - 8e-40 136.6 0.0 1.2e-39 136.1 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|261403316|ref|YP_003247540.1| - 1.2e-05 25.3 0.0 2.8e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|261403316|ref|YP_003247540.1| - 0.00057 19.9 0.0 0.0016 18.4 0.0 1.7 1 1 1 2 2 2 1 AAA domain ParA PF10609.9 gi|261403316|ref|YP_003247540.1| - 0.0048 16.4 0.0 0.0073 15.8 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_24 PF13479.6 gi|261403316|ref|YP_003247540.1| - 0.0082 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|261403316|ref|YP_003247540.1| - 0.0098 14.9 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|261403316|ref|YP_003247540.1| - 0.025 14.1 0.1 0.057 13.0 0.1 1.7 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain SRP54 PF00448.22 gi|261403316|ref|YP_003247540.1| - 0.027 14.1 0.4 0.97 9.0 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|261403316|ref|YP_003247540.1| - 0.03 14.2 0.1 0.06 13.2 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|261403316|ref|YP_003247540.1| - 0.049 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|261403316|ref|YP_003247540.1| - 0.049 13.4 0.2 0.11 12.2 0.2 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|261403316|ref|YP_003247540.1| - 0.067 12.3 0.3 0.067 12.3 0.3 2.1 2 0 0 2 2 2 0 G-protein alpha subunit AAA_28 PF13521.6 gi|261403316|ref|YP_003247540.1| - 0.069 13.4 0.0 0.71 10.1 0.1 2.4 3 0 0 3 3 3 0 AAA domain AP_endonuc_2 PF01261.24 gi|261403316|ref|YP_003247540.1| - 0.12 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MipZ PF09140.11 gi|261403316|ref|YP_003247540.1| - 0.17 11.1 0.0 0.28 10.4 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ CobD_Cbib PF03186.13 gi|261403317|ref|YP_003247541.1| - 2.6e-86 289.3 0.0 3.2e-86 289.0 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF4018 PF13210.6 gi|261403317|ref|YP_003247541.1| - 0.0034 17.2 2.1 0.0038 17.0 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4018) DUF521 PF04412.13 gi|261403318|ref|YP_003247542.1| - 1.3e-161 537.8 0.3 1.4e-161 537.7 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase PF00330.20 gi|261403318|ref|YP_003247542.1| - 0.19 10.7 1.0 0.23 10.4 0.3 1.4 2 0 0 2 2 2 0 Aconitase family (aconitate hydratase) tRNA_anti-codon PF01336.25 gi|261403319|ref|YP_003247543.1| - 1.4e-42 143.5 20.8 2.6e-15 56.2 1.2 6.0 5 1 1 6 6 6 4 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|261403319|ref|YP_003247543.1| - 1.4e-17 63.4 18.9 1.2e-06 28.4 2.2 4.7 5 0 0 5 5 4 4 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|261403319|ref|YP_003247543.1| - 3.4e-14 53.1 7.1 0.004 16.9 0.1 5.1 5 0 0 5 5 5 4 Cell division control protein 24, OB domain 3 Rep_fac-A_C PF08646.10 gi|261403319|ref|YP_003247543.1| - 1.9e-08 34.1 0.5 5.5e-05 22.9 0.0 4.4 4 1 0 4 4 4 1 Replication factor-A C terminal domain DUF3127 PF11325.8 gi|261403319|ref|YP_003247543.1| - 1.3e-07 31.7 7.3 0.00033 20.8 0.1 4.4 4 0 0 4 4 4 2 Domain of unknown function (DUF3127) zinc_ribbon_2 PF13240.6 gi|261403319|ref|YP_003247543.1| - 4.7e-06 26.1 2.4 9.5e-06 25.2 2.4 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|261403319|ref|YP_003247543.1| - 0.00047 20.1 0.1 0.00085 19.3 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon POT1PC PF16686.5 gi|261403319|ref|YP_003247543.1| - 0.00066 19.6 0.4 0.72 9.7 0.0 4.0 3 1 1 4 4 4 1 ssDNA-binding domain of telomere protection protein DUF5088 PF17008.5 gi|261403319|ref|YP_003247543.1| - 0.0009 19.0 2.2 0.17 11.6 0.1 3.7 1 1 1 3 3 3 1 Domain of unknown function (DUF5088) POT1 PF02765.17 gi|261403319|ref|YP_003247543.1| - 0.0011 18.8 2.7 4 7.3 0.1 4.5 3 2 0 3 3 3 2 Telomeric single stranded DNA binding POT1/CDC13 zf-ribbon_3 PF13248.6 gi|261403319|ref|YP_003247543.1| - 0.0013 18.1 2.1 0.0029 16.9 2.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Dna2 PF08696.11 gi|261403319|ref|YP_003247543.1| - 0.0014 18.5 4.5 3.1 7.5 0.0 4.0 3 1 1 4 4 4 1 DNA replication factor Dna2 TF_Zn_Ribbon PF08271.12 gi|261403319|ref|YP_003247543.1| - 0.0019 17.6 6.8 0.0093 15.5 3.5 3.1 1 1 1 2 2 2 1 TFIIB zinc-binding zinc_ribbon_15 PF17032.5 gi|261403319|ref|YP_003247543.1| - 0.008 16.9 0.1 0.022 15.5 0.1 1.8 1 0 0 1 1 1 1 zinc-ribbon family DUF1967 PF09269.11 gi|261403319|ref|YP_003247543.1| - 0.011 15.7 7.0 6.5 6.8 0.0 5.8 6 0 0 6 6 6 0 Domain of unknown function (DUF1967) YukD PF08817.10 gi|261403319|ref|YP_003247543.1| - 0.012 16.3 0.2 36 5.2 0.1 3.3 3 0 0 3 3 3 0 WXG100 protein secretion system (Wss), protein YukD NIR_SIR_ferr PF03460.17 gi|261403319|ref|YP_003247543.1| - 0.07 13.0 0.2 16 5.4 0.0 4.2 4 0 0 4 4 4 0 Nitrite/Sulfite reductase ferredoxin-like half domain Mucin_bdg PF03272.13 gi|261403319|ref|YP_003247543.1| - 0.088 12.9 0.4 19 5.3 0.0 3.5 2 1 0 2 2 2 0 Putative mucin or carbohydrate-binding module T6SS_Vgr PF13296.6 gi|261403319|ref|YP_003247543.1| - 0.093 12.9 0.0 14 5.9 0.0 3.1 3 0 0 3 3 3 0 Putative type VI secretion system Rhs element Vgr zf-C3HC4_3 PF13920.6 gi|261403319|ref|YP_003247543.1| - 0.11 12.4 0.3 0.2 11.6 0.3 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.9 gi|261403319|ref|YP_003247543.1| - 1.3 9.1 4.0 2.7 8.2 4.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 ATP_bind_3 PF01171.20 gi|261403320|ref|YP_003247544.1| - 7.4e-16 58.4 0.0 2.8e-15 56.5 0.0 1.8 1 1 0 1 1 1 1 PP-loop family RecR PF02132.15 gi|261403320|ref|YP_003247544.1| - 0.00057 19.4 1.6 0.00057 19.4 1.6 2.8 3 0 0 3 3 3 1 RecR protein tRNA_Me_trans PF03054.16 gi|261403320|ref|YP_003247544.1| - 0.0014 17.5 0.1 0.0018 17.1 0.1 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|261403320|ref|YP_003247544.1| - 0.0036 17.3 0.1 0.047 13.7 0.1 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|261403320|ref|YP_003247544.1| - 0.017 14.6 6.9 0.017 14.6 6.9 2.2 2 1 1 3 3 3 0 Zinc-ribbon NAD_synthase PF02540.17 gi|261403320|ref|YP_003247544.1| - 0.11 11.6 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 NAD synthase C6_DPF PF10170.9 gi|261403320|ref|YP_003247544.1| - 0.54 10.7 0.1 0.54 10.7 0.1 2.9 3 0 0 3 3 3 0 Cysteine-rich domain DUF35_N PF12172.8 gi|261403321|ref|YP_003247545.1| - 0.0018 18.1 3.0 1.8 8.5 0.1 3.0 3 0 0 3 3 3 2 Rubredoxin-like zinc ribbon domain (DUF35_N) C1_1 PF00130.22 gi|261403321|ref|YP_003247545.1| - 0.002 18.0 9.4 0.023 14.5 1.2 2.3 2 0 0 2 2 2 2 Phorbol esters/diacylglycerol binding domain (C1 domain) Elf1 PF05129.13 gi|261403321|ref|YP_003247545.1| - 0.0098 15.9 11.1 0.026 14.5 1.3 2.3 2 1 0 2 2 2 1 Transcription elongation factor Elf1 like DNA_RNApol_7kD PF03604.13 gi|261403321|ref|YP_003247545.1| - 0.011 15.4 13.0 0.11 12.2 4.6 3.2 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|261403321|ref|YP_003247545.1| - 0.024 14.7 7.7 0.51 10.5 0.2 3.1 2 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_13 PF09855.9 gi|261403321|ref|YP_003247545.1| - 0.028 14.6 0.3 0.028 14.6 0.3 2.9 2 2 1 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.6 gi|261403321|ref|YP_003247545.1| - 0.036 14.0 14.2 0.62 10.0 3.2 3.3 2 2 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|261403321|ref|YP_003247545.1| - 0.039 13.9 8.0 0.53 10.2 0.4 2.8 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Ribosomal_L32p PF01783.23 gi|261403321|ref|YP_003247545.1| - 0.049 13.9 4.9 3.5 8.0 0.0 3.6 3 1 0 3 3 3 0 Ribosomal L32p protein family HypA PF01155.19 gi|261403321|ref|YP_003247545.1| - 0.07 13.2 9.2 0.55 10.3 0.9 2.4 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CCHC_6 PF15288.6 gi|261403321|ref|YP_003247545.1| - 0.091 12.6 5.6 2.1 8.3 0.7 2.7 2 0 0 2 2 2 0 Zinc knuckle Zn_Tnp_IS1595 PF12760.7 gi|261403321|ref|YP_003247545.1| - 0.1 12.6 11.2 4.8 7.2 2.2 3.7 1 1 3 4 4 4 0 Transposase zinc-ribbon domain DUF2752 PF10825.8 gi|261403321|ref|YP_003247545.1| - 0.12 12.5 0.3 15 5.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) PDCD2_C PF04194.13 gi|261403321|ref|YP_003247545.1| - 0.17 11.9 3.8 1.6 8.8 0.4 2.5 2 1 0 2 2 2 0 Programmed cell death protein 2, C-terminal putative domain zf-MYND PF01753.18 gi|261403321|ref|YP_003247545.1| - 0.27 11.4 9.1 1.5 9.0 2.0 2.5 2 0 0 2 2 2 0 MYND finger Lar_restr_allev PF14354.6 gi|261403321|ref|YP_003247545.1| - 0.32 11.4 7.7 0.92 9.9 0.9 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|261403321|ref|YP_003247545.1| - 0.52 9.8 12.0 1.2 8.6 0.2 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|261403321|ref|YP_003247545.1| - 0.78 10.0 6.7 7.1 6.9 0.1 3.1 4 0 0 4 4 3 0 C4-type zinc ribbon domain IBR PF01485.21 gi|261403321|ref|YP_003247545.1| - 0.89 9.8 12.6 2.5 8.4 1.3 3.2 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain Sgf11 PF08209.11 gi|261403321|ref|YP_003247545.1| - 1.3 8.6 12.2 7.1 6.3 0.2 3.9 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) Ribosomal_S27e PF01667.17 gi|261403321|ref|YP_003247545.1| - 2.3 8.0 11.9 2.5 7.9 1.8 2.5 2 1 0 2 2 2 0 Ribosomal protein S27 zf-CCHC PF00098.23 gi|261403321|ref|YP_003247545.1| - 3.6 7.8 20.2 12 6.2 0.3 4.2 4 0 0 4 4 4 0 Zinc knuckle TFIIS_C PF01096.18 gi|261403321|ref|YP_003247545.1| - 3.8 7.4 14.3 4.6 7.2 0.1 4.0 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.6 gi|261403321|ref|YP_003247545.1| - 4.2 7.4 8.5 7.1 6.6 0.6 2.9 2 1 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|261403321|ref|YP_003247545.1| - 6.4 6.6 15.5 1.1 9.0 0.1 4.0 4 0 0 4 4 4 0 zinc-ribbon domain AAA PF00004.29 gi|261403322|ref|YP_003247546.1| - 7.9e-102 336.9 1.9 2.2e-49 167.3 0.0 3.6 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|261403322|ref|YP_003247546.1| - 1.8e-37 126.9 1.8 3.6e-18 65.1 0.1 3.3 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|261403322|ref|YP_003247546.1| - 8.9e-33 112.3 0.0 5.1e-32 109.9 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|261403322|ref|YP_003247546.1| - 3.8e-17 62.5 0.0 2.3e-07 30.7 0.0 3.1 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|261403322|ref|YP_003247546.1| - 3.2e-16 59.9 0.0 3.3e-07 30.6 0.0 3.1 3 1 0 3 3 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|261403322|ref|YP_003247546.1| - 5.2e-16 58.2 1.5 4.8e-15 55.1 1.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|261403322|ref|YP_003247546.1| - 1e-13 52.1 3.5 3.1e-06 27.7 0.0 4.6 3 3 0 4 4 4 2 AAA ATPase domain AAA_5 PF07728.14 gi|261403322|ref|YP_003247546.1| - 3.9e-13 49.6 3.3 1.3e-05 25.2 0.0 4.5 3 3 1 4 4 3 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|261403322|ref|YP_003247546.1| - 1e-11 44.6 6.5 1.4e-05 24.5 0.0 3.2 4 0 0 4 4 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|261403322|ref|YP_003247546.1| - 1.4e-11 44.8 0.0 3e-05 24.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|261403322|ref|YP_003247546.1| - 8.2e-11 41.7 6.4 6.2e-06 26.1 0.1 4.2 4 0 0 4 4 3 2 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|261403322|ref|YP_003247546.1| - 1e-10 41.8 0.1 0.00067 19.7 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|261403322|ref|YP_003247546.1| - 1e-09 38.8 9.9 0.003 17.8 0.1 6.0 4 3 1 5 5 4 2 AAA domain AAA_18 PF13238.6 gi|261403322|ref|YP_003247546.1| - 9.7e-09 35.9 0.2 0.016 15.8 0.0 3.6 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|261403322|ref|YP_003247546.1| - 1.2e-08 34.9 0.0 0.0039 16.9 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF815 PF05673.13 gi|261403322|ref|YP_003247546.1| - 2.6e-08 33.4 0.1 0.0013 17.9 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|261403322|ref|YP_003247546.1| - 3.6e-08 33.8 0.0 0.003 17.8 0.0 2.9 3 0 0 3 3 2 2 AAA domain Sigma54_activat PF00158.26 gi|261403322|ref|YP_003247546.1| - 1e-07 31.8 0.0 0.018 14.8 0.0 3.6 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|261403322|ref|YP_003247546.1| - 4.6e-07 29.4 0.3 0.045 13.1 0.1 2.9 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|261403322|ref|YP_003247546.1| - 8.3e-07 28.7 2.0 0.2 11.1 0.0 3.5 3 0 0 3 3 3 2 PhoH-like protein AAA_25 PF13481.6 gi|261403322|ref|YP_003247546.1| - 1.1e-06 28.3 1.1 1.8 8.1 0.0 4.1 4 0 0 4 4 4 3 AAA domain AAA_7 PF12775.7 gi|261403322|ref|YP_003247546.1| - 1.9e-06 27.5 0.0 0.025 14.1 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|261403322|ref|YP_003247546.1| - 2.5e-06 26.9 0.2 0.069 12.4 0.0 3.2 3 0 0 3 3 3 2 Zeta toxin TsaE PF02367.17 gi|261403322|ref|YP_003247546.1| - 3.7e-06 26.9 0.1 0.16 12.0 0.0 2.9 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|261403322|ref|YP_003247546.1| - 5.4e-06 26.8 0.0 0.26 11.7 0.0 3.1 3 0 0 3 3 2 2 RNA helicase ABC_tran PF00005.27 gi|261403322|ref|YP_003247546.1| - 1.3e-05 25.7 0.3 0.3 11.6 0.0 3.3 3 0 0 3 3 3 2 ABC transporter AAA_24 PF13479.6 gi|261403322|ref|YP_003247546.1| - 1.3e-05 25.0 2.7 0.064 13.0 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|261403322|ref|YP_003247546.1| - 1.7e-05 24.6 0.0 0.25 11.2 0.0 2.8 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|261403322|ref|YP_003247546.1| - 0.00017 21.7 0.0 1.2 9.3 0.0 2.9 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_30 PF13604.6 gi|261403322|ref|YP_003247546.1| - 0.00034 20.4 0.2 0.53 10.0 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|261403322|ref|YP_003247546.1| - 0.0007 20.0 7.0 0.63 10.5 0.0 4.5 4 1 0 4 4 2 2 AAA domain DUF2075 PF09848.9 gi|261403322|ref|YP_003247546.1| - 0.00088 18.6 0.8 0.45 9.7 0.0 2.8 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|261403322|ref|YP_003247546.1| - 0.00096 19.1 0.9 1 9.3 0.1 3.2 3 0 0 3 3 2 1 NACHT domain Parvo_NS1 PF01057.17 gi|261403322|ref|YP_003247546.1| - 0.0015 17.7 0.2 1.5 7.8 0.0 2.6 3 0 0 3 3 2 1 Parvovirus non-structural protein NS1 MCM PF00493.23 gi|261403322|ref|YP_003247546.1| - 0.0017 17.5 0.0 2.9 6.9 0.0 3.1 3 0 0 3 3 3 0 MCM P-loop domain ATPase PF06745.13 gi|261403322|ref|YP_003247546.1| - 0.0024 17.2 12.8 0.42 9.9 0.1 4.9 3 2 1 4 4 4 2 KaiC Baculo_PEP_C PF04513.12 gi|261403322|ref|YP_003247546.1| - 0.0043 17.1 7.7 0.056 13.5 6.6 2.9 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Cytidylate_kin2 PF13189.6 gi|261403322|ref|YP_003247546.1| - 0.0079 16.3 0.0 3.2 7.9 0.0 3.0 2 0 0 2 2 2 0 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|261403322|ref|YP_003247546.1| - 0.0091 16.1 0.2 2.9 8.0 0.0 3.8 3 0 0 3 3 3 0 50S ribosome-binding GTPase IPT PF01745.16 gi|261403322|ref|YP_003247546.1| - 0.011 15.1 0.2 2.1 7.7 0.0 2.7 2 0 0 2 2 2 0 Isopentenyl transferase UFD1 PF03152.14 gi|261403322|ref|YP_003247546.1| - 0.011 15.2 0.0 0.21 11.0 0.0 2.6 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 PduV-EutP PF10662.9 gi|261403322|ref|YP_003247546.1| - 0.014 15.1 0.6 8.3 6.2 0.0 3.2 4 0 0 4 4 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|261403322|ref|YP_003247546.1| - 0.017 14.4 6.4 1.5 7.9 0.0 4.0 4 1 0 4 4 3 0 NB-ARC domain AFG1_ATPase PF03969.16 gi|261403322|ref|YP_003247546.1| - 0.018 14.0 0.5 4.5 6.1 0.0 2.9 3 0 0 3 3 3 0 AFG1-like ATPase AAA_6 PF12774.7 gi|261403322|ref|YP_003247546.1| - 0.02 13.9 2.2 1.8 7.5 0.0 3.3 3 1 0 3 3 3 0 Hydrolytic ATP binding site of dynein motor region Viral_helicase1 PF01443.18 gi|261403322|ref|YP_003247546.1| - 0.025 14.3 0.0 0.94 9.2 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|261403322|ref|YP_003247546.1| - 0.028 14.2 12.6 4.7 6.9 0.0 3.8 3 1 0 3 3 2 0 AAA domain Molydop_binding PF01568.21 gi|261403322|ref|YP_003247546.1| - 0.036 14.1 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 1 0 Molydopterin dinucleotide binding domain Cytidylate_kin PF02224.18 gi|261403322|ref|YP_003247546.1| - 0.038 13.7 0.2 8.3 6.1 0.1 2.7 2 0 0 2 2 2 0 Cytidylate kinase Abi_C PF14355.6 gi|261403322|ref|YP_003247546.1| - 0.064 13.4 1.0 0.51 10.5 0.1 2.8 1 1 1 2 2 2 0 Abortive infection C-terminus DUF1677 PF07911.13 gi|261403322|ref|YP_003247546.1| - 0.065 13.6 0.0 0.9 10.0 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1677) AAA_29 PF13555.6 gi|261403322|ref|YP_003247546.1| - 0.067 13.0 0.0 13 5.6 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|261403322|ref|YP_003247546.1| - 0.13 12.6 7.6 4 7.8 0.3 3.4 3 1 0 3 3 2 0 AAA domain Sec34 PF04136.15 gi|261403322|ref|YP_003247546.1| - 0.13 12.1 9.4 0.28 11.1 8.1 2.1 1 1 1 2 2 1 0 Sec34-like family SKI PF01202.22 gi|261403322|ref|YP_003247546.1| - 0.17 12.0 2.1 12 6.0 0.0 3.0 3 1 1 4 4 2 0 Shikimate kinase cobW PF02492.19 gi|261403322|ref|YP_003247546.1| - 0.25 10.9 3.9 4 7.0 0.0 3.3 3 1 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DUF2203 PF09969.9 gi|261403322|ref|YP_003247546.1| - 0.3 11.8 10.8 0.036 14.8 2.2 3.1 3 1 0 3 3 2 0 Uncharacterized conserved protein (DUF2203) Allexi_40kDa PF05549.11 gi|261403322|ref|YP_003247546.1| - 0.31 10.5 6.9 0.45 10.0 5.8 1.8 1 1 0 1 1 1 0 Allexivirus 40kDa protein Glutaredoxin2_C PF04399.13 gi|261403322|ref|YP_003247546.1| - 0.55 10.1 2.9 1 9.2 0.7 2.5 1 1 1 2 2 2 0 Glutaredoxin 2, C terminal domain CorA PF01544.18 gi|261403322|ref|YP_003247546.1| - 0.96 8.7 6.8 1.4 8.1 4.7 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF948 PF06103.11 gi|261403322|ref|YP_003247546.1| - 1.4 9.2 6.8 32 4.9 4.8 3.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) SMC_Nse1 PF07574.13 gi|261403322|ref|YP_003247546.1| - 2.2 8.1 6.4 2.5 7.9 0.3 2.6 1 1 1 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex NTPase_1 PF03266.15 gi|261403322|ref|YP_003247546.1| - 2.4 8.0 10.1 9.1 6.2 0.0 4.3 4 2 1 5 5 3 0 NTPase KxDL PF10241.9 gi|261403322|ref|YP_003247546.1| - 4.3 7.7 8.3 2.7 8.3 1.9 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein MitMem_reg PF13012.6 gi|261403322|ref|YP_003247546.1| - 5.3 7.5 7.5 1.9e+02 2.5 6.8 3.2 2 1 0 2 2 1 0 Maintenance of mitochondrial structure and function eIF3_N PF09440.10 gi|261403322|ref|YP_003247546.1| - 8.9 6.8 16.2 0.097 13.1 2.0 3.3 2 1 1 3 3 2 0 eIF3 subunit 6 N terminal domain NPV_P10 PF05531.12 gi|261403322|ref|YP_003247546.1| - 9.4 6.8 14.7 45 4.6 10.3 3.9 3 1 1 4 4 2 0 Nucleopolyhedrovirus P10 protein WH1 PF00568.23 gi|261403323|ref|YP_003247547.1| - 0.067 13.1 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 WH1 domain DUF4898 PF16239.5 gi|261403323|ref|YP_003247547.1| - 0.14 12.1 3.6 0.13 12.3 1.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4898) GH131_N PF18271.1 gi|261403323|ref|YP_003247547.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Glycoside hydrolase 131 catalytic N-terminal domain RNA_pol_Rpb4 PF03874.16 gi|261403323|ref|YP_003247547.1| - 2.3 8.6 5.7 0.36 11.2 1.3 1.9 2 1 0 2 2 2 0 RNA polymerase Rpb4 WbqC PF08889.11 gi|261403324|ref|YP_003247548.1| - 0.0057 16.6 3.9 0.007 16.3 3.5 1.3 1 1 0 1 1 1 1 WbqC-like protein family UDPG_MGDP_dh_N PF03721.14 gi|261403325|ref|YP_003247549.1| - 7.7e-56 188.6 0.6 7.7e-56 188.6 0.6 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|261403325|ref|YP_003247549.1| - 2.5e-27 94.9 0.0 5.2e-27 93.9 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|261403325|ref|YP_003247549.1| - 3.4e-25 88.5 2.4 4.6e-25 88.1 0.4 2.3 3 0 0 3 3 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 2-Hacid_dh_C PF02826.19 gi|261403325|ref|YP_003247549.1| - 6e-09 35.5 1.1 2.5e-05 23.7 0.1 2.7 3 0 0 3 3 3 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|261403325|ref|YP_003247549.1| - 9.1e-08 32.4 0.3 2.5e-06 27.8 0.0 3.1 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|261403325|ref|YP_003247549.1| - 5e-05 23.0 0.1 0.00017 21.2 0.0 1.9 2 0 0 2 2 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|261403325|ref|YP_003247549.1| - 0.00028 20.8 0.4 0.0011 18.9 0.0 2.2 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|261403325|ref|YP_003247549.1| - 0.00035 20.8 7.2 0.01 16.1 0.0 3.9 4 1 0 4 4 4 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|261403325|ref|YP_003247549.1| - 0.0005 19.4 0.0 0.0012 18.2 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|261403325|ref|YP_003247549.1| - 0.0022 18.1 0.4 1.6 8.8 0.1 2.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|261403325|ref|YP_003247549.1| - 0.004 17.2 0.4 0.55 10.2 0.0 3.1 2 1 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.12 gi|261403325|ref|YP_003247549.1| - 0.007 16.0 0.9 0.3 10.7 0.0 3.0 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF1699 PF08004.11 gi|261403325|ref|YP_003247549.1| - 0.011 15.4 1.3 5.6 6.7 0.0 4.0 4 1 0 4 4 4 0 Protein of unknown function (DUF1699) F420_oxidored PF03807.17 gi|261403325|ref|YP_003247549.1| - 0.016 15.8 1.6 0.49 11.0 0.1 3.6 3 1 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent OKR_DC_1_N PF03709.15 gi|261403325|ref|YP_003247549.1| - 0.019 15.3 0.0 0.29 11.4 0.0 2.6 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain ADH_zinc_N PF00107.26 gi|261403325|ref|YP_003247549.1| - 0.021 14.8 0.0 0.059 13.4 0.0 1.8 1 0 0 1 1 1 0 Zinc-binding dehydrogenase adh_short PF00106.25 gi|261403325|ref|YP_003247549.1| - 0.027 13.9 0.2 0.51 9.8 0.1 2.4 2 0 0 2 2 2 0 short chain dehydrogenase Pyr_redox_2 PF07992.14 gi|261403325|ref|YP_003247549.1| - 0.028 13.6 0.0 0.076 12.2 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UPF0146 PF03686.13 gi|261403325|ref|YP_003247549.1| - 0.034 14.0 0.1 0.11 12.4 0.1 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) GFO_IDH_MocA PF01408.22 gi|261403325|ref|YP_003247549.1| - 0.05 14.4 0.1 1.1 10.0 0.0 2.9 3 1 0 3 3 2 0 Oxidoreductase family, NAD-binding Rossmann fold TIR-like PF10137.9 gi|261403325|ref|YP_003247549.1| - 0.068 13.1 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain ThiF PF00899.21 gi|261403325|ref|YP_003247549.1| - 0.083 12.2 0.1 0.39 10.0 0.0 2.0 2 0 0 2 2 2 0 ThiF family NAD_binding_7 PF13241.6 gi|261403325|ref|YP_003247549.1| - 0.11 12.9 0.6 3.1 8.3 0.0 2.8 2 2 0 2 2 2 0 Putative NAD(P)-binding CofC PF01983.16 gi|261403325|ref|YP_003247549.1| - 1.1 8.4 9.4 1.2 8.3 0.0 3.5 4 1 0 4 4 4 0 Guanylyl transferase CofC like Lon_C PF05362.13 gi|261403326|ref|YP_003247550.1| - 7.5e-27 94.2 0.2 1.6e-26 93.2 0.2 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|261403326|ref|YP_003247550.1| - 6.5e-17 61.5 0.0 1.1e-13 50.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|261403326|ref|YP_003247550.1| - 1.3e-12 47.6 0.0 1e-05 25.0 0.0 2.9 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|261403326|ref|YP_003247550.1| - 4.7e-11 42.7 0.0 1.7e-06 27.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|261403326|ref|YP_003247550.1| - 4.4e-08 33.0 0.0 1.3e-07 31.5 0.1 1.8 2 0 0 2 2 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|261403326|ref|YP_003247550.1| - 5.4e-07 29.7 0.0 0.027 14.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|261403326|ref|YP_003247550.1| - 2.2e-06 26.9 3.6 0.036 13.2 0.0 3.4 3 1 0 3 3 3 2 MCM P-loop domain RuvB_N PF05496.12 gi|261403326|ref|YP_003247550.1| - 8.4e-05 22.4 0.0 0.33 10.7 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|261403326|ref|YP_003247550.1| - 0.00025 21.5 0.0 0.02 15.3 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|261403326|ref|YP_003247550.1| - 0.0029 18.0 0.0 0.0055 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|261403326|ref|YP_003247550.1| - 0.0051 16.6 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein FeoB_N PF02421.18 gi|261403326|ref|YP_003247550.1| - 0.0074 15.8 1.0 9.5 5.7 0.0 3.4 3 1 0 3 3 3 0 Ferrous iron transport protein B AAA_7 PF12775.7 gi|261403326|ref|YP_003247550.1| - 0.015 14.8 0.0 0.037 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|261403326|ref|YP_003247550.1| - 0.021 15.2 0.1 0.13 12.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|261403326|ref|YP_003247550.1| - 0.028 14.7 0.0 0.19 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|261403326|ref|YP_003247550.1| - 0.059 13.1 0.0 0.19 11.4 0.0 1.8 3 0 0 3 3 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|261403326|ref|YP_003247550.1| - 0.061 13.4 0.0 14 5.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|261403326|ref|YP_003247550.1| - 0.066 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF5455 PF17537.2 gi|261403326|ref|YP_003247550.1| - 0.98 9.9 5.2 0.52 10.7 2.5 2.0 2 0 0 2 2 1 0 Family of unknown function (DUF5455) AIRS_C PF02769.22 gi|261403327|ref|YP_003247551.1| - 7.7e-13 48.9 0.0 1.4e-12 48.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|261403327|ref|YP_003247551.1| - 1e-07 32.5 4.2 2.4e-07 31.3 4.2 1.7 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1104 PF06518.11 gi|261403327|ref|YP_003247551.1| - 0.17 12.3 3.4 0.17 12.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) Methyltransf_30 PF05430.11 gi|261403328|ref|YP_003247552.1| - 5.6e-32 110.2 0.0 9.1e-32 109.6 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|261403328|ref|YP_003247552.1| - 0.046 13.3 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase small domain RibD_C PF01872.17 gi|261403330|ref|YP_003247554.1| - 1.6e-65 220.7 0.1 1.8e-65 220.6 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DUF169 PF02596.15 gi|261403331|ref|YP_003247555.1| - 3.7e-61 206.7 0.2 4.1e-61 206.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 Thioredoxin_3 PF13192.6 gi|261403332|ref|YP_003247556.1| - 4.4e-18 65.1 1.5 4.8e-18 65.0 1.5 1.0 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|261403332|ref|YP_003247556.1| - 2.9e-12 46.6 0.3 4.6e-12 46.0 0.3 1.3 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin PF00085.20 gi|261403332|ref|YP_003247556.1| - 5.4e-10 39.2 0.1 6.2e-10 39.0 0.1 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|261403332|ref|YP_003247556.1| - 2.4e-09 37.6 0.8 0.00022 21.5 0.2 2.0 1 1 1 2 2 2 2 Thioredoxin DSBA PF01323.20 gi|261403332|ref|YP_003247556.1| - 1.9e-08 34.3 0.1 0.0026 17.6 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain DUF1223 PF06764.11 gi|261403332|ref|YP_003247556.1| - 1.6e-05 25.1 0.1 0.00074 19.6 0.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1223) DUF836 PF05768.14 gi|261403332|ref|YP_003247556.1| - 3.8e-05 24.0 0.0 4.1e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) KaiB PF07689.12 gi|261403332|ref|YP_003247556.1| - 8.9e-05 22.2 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 KaiB domain Thioredoxin_2 PF13098.6 gi|261403332|ref|YP_003247556.1| - 0.002 18.5 0.3 0.0045 17.4 0.3 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain DUF953 PF06110.11 gi|261403332|ref|YP_003247556.1| - 0.0049 16.5 0.8 0.012 15.3 0.9 1.6 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF953) Thioredoxin_5 PF13743.6 gi|261403332|ref|YP_003247556.1| - 0.045 13.4 0.1 0.77 9.4 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin ABC_transp_aux PF09822.9 gi|261403332|ref|YP_003247556.1| - 0.086 12.3 0.0 0.086 12.3 0.0 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system HMA PF00403.26 gi|261403332|ref|YP_003247556.1| - 0.1 13.1 0.1 5.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal-associated domain Fer4 PF00037.27 gi|261403333|ref|YP_003247557.1| - 0.014 15.2 1.4 0.028 14.2 1.4 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain PqqD PF05402.12 gi|261403333|ref|YP_003247557.1| - 0.1 12.9 0.1 0.13 12.5 0.1 1.1 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Voltage_CLC PF00654.20 gi|261403334|ref|YP_003247558.1| - 1.3e-66 225.2 25.2 1.3e-66 225.2 25.2 1.6 1 1 1 2 2 2 1 Voltage gated chloride channel DUF3522 PF12036.8 gi|261403334|ref|YP_003247558.1| - 0.016 15.5 6.1 2.2 8.6 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3522) PIG-P PF08510.12 gi|261403334|ref|YP_003247558.1| - 0.085 12.8 0.2 0.085 12.8 0.2 2.2 2 0 0 2 2 2 0 PIG-P Cas_DxTHG PF09455.10 gi|261403335|ref|YP_003247559.1| - 1.1e-75 255.6 11.6 1.3e-75 255.3 11.6 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family SL4P PF17618.2 gi|261403335|ref|YP_003247559.1| - 0.13 12.3 1.8 0.14 12.2 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized Strongylid L4 protein Cep57_MT_bd PF06657.13 gi|261403335|ref|YP_003247559.1| - 0.25 11.8 2.8 7.2 7.1 0.1 3.2 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 Csm1_B PF18211.1 gi|261403336|ref|YP_003247560.1| - 8.8e-31 105.6 0.6 1.6e-29 101.6 0.4 2.7 2 0 0 2 2 2 1 Csm1 subunit domain B C1_1 PF00130.22 gi|261403336|ref|YP_003247560.1| - 0.044 13.7 1.1 0.079 12.9 1.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Op_neuropeptide PF08035.11 gi|261403336|ref|YP_003247560.1| - 0.098 12.5 0.3 0.25 11.2 0.3 1.7 1 0 0 1 1 1 0 Opioids neuropeptide UPF0515 PF15135.6 gi|261403336|ref|YP_003247560.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Csm2_III-A PF03750.13 gi|261403337|ref|YP_003247561.1| - 8.7e-21 74.9 1.0 8.7e-21 74.9 1.0 2.2 1 1 1 2 2 2 1 Csm2 Type III-A Fungal_trans_2 PF11951.8 gi|261403337|ref|YP_003247561.1| - 0.058 12.2 0.6 0.063 12.1 0.5 1.3 1 1 0 1 1 1 0 Fungal specific transcription factor domain SurA_N PF09312.11 gi|261403337|ref|YP_003247561.1| - 0.11 12.6 4.3 0.21 11.7 4.0 1.9 1 1 0 1 1 1 0 SurA N-terminal domain SLATT_5 PF18160.1 gi|261403337|ref|YP_003247561.1| - 0.22 10.8 7.4 0.083 12.2 5.1 1.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF4665 PF15679.5 gi|261403337|ref|YP_003247561.1| - 0.61 10.7 13.2 2.9 8.6 8.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4665) DUF1640 PF07798.11 gi|261403337|ref|YP_003247561.1| - 4.6 7.3 16.5 5.8 6.9 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) RAMPs PF03787.15 gi|261403338|ref|YP_003247562.1| - 4.1e-23 82.5 1.8 7.1e-23 81.8 1.8 1.4 1 0 0 1 1 1 1 RAMP superfamily Heme_oxygenase PF01126.20 gi|261403338|ref|YP_003247562.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Heme oxygenase Csm4_C PF17953.1 gi|261403339|ref|YP_003247563.1| - 1.7e-11 43.8 0.0 3.4e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 CRISPR Csm4 C-terminal domain RAMPs PF03787.15 gi|261403339|ref|YP_003247563.1| - 4e-08 33.6 2.0 9.1e-08 32.4 2.0 1.7 1 1 0 1 1 1 1 RAMP superfamily Cas_Cas6 PF01881.16 gi|261403339|ref|YP_003247563.1| - 8.4 6.9 9.4 20 5.7 9.4 1.6 1 1 0 1 1 1 0 CRISPR associated protein Cas6 RAMPs PF03787.15 gi|261403340|ref|YP_003247564.1| - 1.1e-21 77.9 0.0 2.2e-21 76.9 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily DUF1858 PF08984.11 gi|261403340|ref|YP_003247564.1| - 0.086 13.0 0.5 21 5.4 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1858) Helicase_C PF00271.31 gi|261403341|ref|YP_003247565.1| - 3.6e-19 69.1 0.7 1.9e-18 66.8 0.0 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain PLDc_2 PF13091.6 gi|261403341|ref|YP_003247565.1| - 1.1e-16 60.9 0.4 5.2e-16 58.7 0.4 2.2 1 0 0 1 1 1 1 PLD-like domain SNF2_N PF00176.23 gi|261403341|ref|YP_003247565.1| - 6.2e-08 31.7 0.2 2.8e-07 29.6 0.0 2.2 2 1 0 2 2 2 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|261403341|ref|YP_003247565.1| - 4e-07 30.2 0.4 3.6e-06 27.1 0.0 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit RE_NgoFVII PF09565.10 gi|261403341|ref|YP_003247565.1| - 0.00017 21.0 1.6 0.00039 19.8 0.2 2.3 2 0 0 2 2 2 1 NgoFVII restriction endonuclease DEAD PF00270.29 gi|261403341|ref|YP_003247565.1| - 0.0032 17.3 0.1 0.11 12.3 0.0 3.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|261403341|ref|YP_003247565.1| - 0.044 14.0 0.0 0.44 10.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain DASH_Dad4 PF08650.10 gi|261403341|ref|YP_003247565.1| - 0.23 11.5 2.1 33 4.5 0.0 3.1 2 0 0 2 2 2 0 DASH complex subunit Dad4 TBPIP PF07106.13 gi|261403341|ref|YP_003247565.1| - 2.8 7.9 6.9 0.57 10.2 0.2 3.0 2 1 1 3 3 3 0 TBPIP/Hop2 winged helix domain TaqI_C PF12950.7 gi|261403342|ref|YP_003247566.1| - 4.1e-18 65.6 0.7 4.1e-18 65.6 0.7 4.5 5 0 0 5 5 5 1 TaqI-like C-terminal specificity domain N6_Mtase PF02384.16 gi|261403342|ref|YP_003247566.1| - 1.8e-16 60.3 14.8 5.2e-11 42.4 1.5 4.9 4 2 0 4 4 4 3 N-6 DNA Methylase Eco57I PF07669.11 gi|261403342|ref|YP_003247566.1| - 2.2e-15 57.1 0.8 2.2e-15 57.1 0.8 3.1 4 0 0 4 4 4 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.6 gi|261403342|ref|YP_003247566.1| - 2.4e-05 24.2 1.1 0.012 15.4 0.6 4.0 2 1 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|261403342|ref|YP_003247566.1| - 0.00011 22.0 0.0 0.015 14.9 0.0 2.4 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Hexapep PF00132.24 gi|261403343|ref|YP_003247567.1| - 1.9e-19 68.6 22.5 3.6e-12 45.5 2.1 4.3 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|261403343|ref|YP_003247567.1| - 2.1e-08 33.7 4.9 2.1e-08 33.7 4.9 3.5 2 1 1 3 3 3 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|261403343|ref|YP_003247567.1| - 0.0044 16.0 2.1 0.018 14.0 1.7 2.0 1 1 1 2 2 2 2 L-fucokinase DMRL_synthase PF00885.19 gi|261403344|ref|YP_003247568.1| - 2.2e-34 118.3 0.6 2.5e-34 118.1 0.6 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PRA-PH PF01503.17 gi|261403345|ref|YP_003247569.1| - 3.2e-22 78.8 0.8 3.5e-22 78.6 0.8 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|261403345|ref|YP_003247569.1| - 0.00029 20.9 1.8 0.00029 20.9 1.8 2.2 1 1 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain mCpol PF18182.1 gi|261403345|ref|YP_003247569.1| - 0.003 17.9 0.4 0.0042 17.4 0.4 1.2 1 0 0 1 1 1 1 minimal CRISPR polymerase domain Diphthami_syn_2 PF01902.17 gi|261403345|ref|YP_003247569.1| - 0.022 14.3 0.2 0.024 14.2 0.2 1.0 1 0 0 1 1 1 0 Diphthamide synthase Glyco_tran_WecB PF03808.13 gi|261403345|ref|YP_003247569.1| - 0.092 12.7 0.1 0.11 12.5 0.1 1.1 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Bromo_MP PF01573.16 gi|261403345|ref|YP_003247569.1| - 0.1 12.0 0.0 0.32 10.3 0.1 1.7 1 1 1 2 2 2 0 Bromovirus movement protein Lactamase_B PF00753.27 gi|261403346|ref|YP_003247570.1| - 2.1e-11 44.2 0.8 3.2e-11 43.6 0.3 1.7 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|261403346|ref|YP_003247570.1| - 1.8e-08 34.1 0.2 3.3e-08 33.3 0.2 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|261403346|ref|YP_003247570.1| - 0.00063 19.2 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|261403346|ref|YP_003247570.1| - 0.076 12.9 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain BAF PF02961.14 gi|261403346|ref|YP_003247570.1| - 0.13 12.7 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Barrier to autointegration factor CTP_transf_like PF01467.26 gi|261403347|ref|YP_003247571.1| - 9.3e-16 58.3 0.0 2.7e-15 56.8 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|261403347|ref|YP_003247571.1| - 0.0022 17.3 0.0 0.073 12.3 0.1 2.0 2 0 0 2 2 2 2 HIGH Nucleotidyl Transferase ATP-sulfurylase PF01747.17 gi|261403347|ref|YP_003247571.1| - 0.084 12.3 0.0 1.9 7.9 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase DUF2097 PF09870.9 gi|261403348|ref|YP_003247572.1| - 3.4e-16 59.2 5.6 4.3e-16 58.9 5.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2097) SAM_2 PF07647.17 gi|261403348|ref|YP_003247572.1| - 0.088 12.9 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 SAM domain (Sterile alpha motif) tRNA-synt_1f PF01921.18 gi|261403349|ref|YP_003247573.1| - 9.3e-136 452.5 0.3 1.4e-135 451.9 0.3 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|261403349|ref|YP_003247573.1| - 6.9e-05 21.8 4.1 0.0016 17.2 0.0 3.0 3 1 0 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|261403349|ref|YP_003247573.1| - 0.0022 17.4 2.5 1.9 7.8 0.0 3.5 3 1 0 4 4 4 2 tRNA synthetases class I (C) catalytic domain eIF-5_eIF-2B PF01873.17 gi|261403349|ref|YP_003247573.1| - 0.0076 16.1 2.3 0.037 13.9 0.5 2.4 2 0 0 2 2 2 1 Domain found in IF2B/IF5 zinc_ribbon_10 PF10058.9 gi|261403349|ref|YP_003247573.1| - 0.012 15.3 0.9 0.028 14.2 0.9 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DpnI PF06044.12 gi|261403349|ref|YP_003247573.1| - 0.049 13.3 0.3 0.093 12.4 0.3 1.4 1 0 0 1 1 1 0 Dam-replacing family WYL PF13280.6 gi|261403350|ref|YP_003247574.1| - 0.015 15.4 0.2 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 WYL domain DUF5344 PF17279.2 gi|261403350|ref|YP_003247574.1| - 0.075 13.6 1.9 7.4 7.2 0.1 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5344) Phage_HK97_TLTM PF06120.11 gi|261403350|ref|YP_003247574.1| - 2 7.5 7.5 0.35 10.0 1.5 2.4 2 1 1 3 3 3 0 Tail length tape measure protein TPP_enzyme_C PF02775.21 gi|261403351|ref|YP_003247575.1| - 4.1e-37 127.3 0.1 5.8e-37 126.8 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.18 gi|261403352|ref|YP_003247576.1| - 1.3e-35 123.0 0.0 1.5e-35 122.8 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Hydrolase PF00702.26 gi|261403353|ref|YP_003247577.1| - 8.5e-06 26.2 0.2 1.3e-05 25.6 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|261403353|ref|YP_003247577.1| - 3.8e-05 23.7 0.1 6.7e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|261403353|ref|YP_003247577.1| - 0.0066 16.2 4.0 0.021 14.6 0.3 2.3 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase STN PF07660.14 gi|261403353|ref|YP_003247577.1| - 0.066 13.0 0.7 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 Secretin and TonB N terminus short domain PIN_9 PF18477.1 gi|261403354|ref|YP_003247578.1| - 6.9e-26 90.8 1.0 7.8e-26 90.7 1.0 1.0 1 0 0 1 1 1 1 PIN like domain Fcf1 PF04900.12 gi|261403354|ref|YP_003247578.1| - 8e-06 26.2 0.0 1.1e-05 25.8 0.0 1.1 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.6 gi|261403354|ref|YP_003247578.1| - 0.00016 22.0 4.4 0.035 14.4 4.4 2.1 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|261403354|ref|YP_003247578.1| - 0.00063 20.2 1.2 0.0014 19.1 1.3 1.5 1 1 0 1 1 1 1 PIN domain 5_3_exonuc_N PF02739.16 gi|261403354|ref|YP_003247578.1| - 0.018 14.9 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain NAD_binding_7 PF13241.6 gi|261403354|ref|YP_003247578.1| - 0.038 14.4 0.2 0.062 13.8 0.2 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding RNase_Zc3h12a PF11977.8 gi|261403354|ref|YP_003247578.1| - 0.052 13.3 0.6 0.077 12.8 0.6 1.4 1 1 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain DUF4411 PF14367.6 gi|261403354|ref|YP_003247578.1| - 0.058 13.3 0.3 0.11 12.4 0.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4411) DUF5615 PF18480.1 gi|261403354|ref|YP_003247578.1| - 0.076 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) Mito_morph_reg PF14972.6 gi|261403354|ref|YP_003247578.1| - 0.11 12.1 0.3 1 8.9 0.1 2.0 2 0 0 2 2 2 0 Mitochondrial morphogenesis regulator DUF131 PF01998.17 gi|261403355|ref|YP_003247579.1| - 1.6e-20 72.5 13.6 2.1e-20 72.1 3.4 2.0 2 0 0 2 2 2 2 Protein of unknown function DUF131 DUF898 PF05987.13 gi|261403355|ref|YP_003247579.1| - 0.049 12.7 1.9 0.055 12.5 1.9 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF2207 PF09972.9 gi|261403355|ref|YP_003247579.1| - 0.089 11.5 6.0 0.11 11.2 6.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3098 PF11297.8 gi|261403355|ref|YP_003247579.1| - 0.16 11.6 10.2 0.21 11.2 8.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) Cytochrom_B_N_2 PF13631.6 gi|261403355|ref|YP_003247579.1| - 0.38 10.7 6.7 0.83 9.6 6.7 1.5 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF4131 PF13567.6 gi|261403355|ref|YP_003247579.1| - 0.38 10.4 1.7 1.8 8.2 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) LapA_dom PF06305.11 gi|261403355|ref|YP_003247579.1| - 0.63 9.9 7.0 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain FixH PF05751.11 gi|261403355|ref|YP_003247579.1| - 0.7 9.9 2.3 6.1 6.8 1.0 2.1 2 0 0 2 2 2 0 FixH DUF5362 PF17319.2 gi|261403355|ref|YP_003247579.1| - 0.88 9.4 10.3 10 6.0 10.3 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5362) Tetraspanin PF00335.20 gi|261403355|ref|YP_003247579.1| - 2 8.1 5.5 5.8 6.6 5.5 1.7 1 1 0 1 1 1 0 Tetraspanin family DUF2614 PF11023.8 gi|261403355|ref|YP_003247579.1| - 3.7 7.7 11.9 1 9.5 1.6 2.1 2 0 0 2 2 2 0 Zinc-ribbon containing domain IMPDH PF00478.25 gi|261403356|ref|YP_003247580.1| - 1.2e-152 507.9 11.4 1.7e-152 507.4 11.4 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|261403356|ref|YP_003247580.1| - 1e-29 102.7 9.9 3.2e-15 56.3 0.6 3.4 3 0 0 3 3 3 2 CBS domain FMN_dh PF01070.18 gi|261403356|ref|YP_003247580.1| - 2.7e-15 56.3 9.3 1.4e-13 50.6 10.4 2.5 2 1 0 2 2 2 1 FMN-dependent dehydrogenase NMO PF03060.15 gi|261403356|ref|YP_003247580.1| - 3.3e-12 46.5 12.2 7.8e-09 35.4 4.9 2.6 2 1 0 2 2 2 2 Nitronate monooxygenase Glu_synthase PF01645.17 gi|261403356|ref|YP_003247580.1| - 1.4e-06 27.8 6.1 3.6e-06 26.4 6.1 1.7 1 0 0 1 1 1 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|261403356|ref|YP_003247580.1| - 1.8e-06 27.6 7.4 4.1e-06 26.4 3.8 2.6 2 1 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|261403356|ref|YP_003247580.1| - 2.7e-05 23.6 5.5 7.1e-05 22.2 3.4 2.3 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|261403356|ref|YP_003247580.1| - 0.00024 20.3 2.8 0.0066 15.6 0.3 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Dus PF01207.17 gi|261403356|ref|YP_003247580.1| - 0.0014 17.8 0.3 0.0014 17.8 0.3 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) DeoC PF01791.9 gi|261403356|ref|YP_003247580.1| - 0.0023 17.6 1.9 0.0023 17.6 1.9 2.0 2 1 0 2 2 2 1 DeoC/LacD family aldolase PRC PF05239.16 gi|261403356|ref|YP_003247580.1| - 0.0023 18.0 0.8 2.2 8.4 0.2 3.0 2 0 0 2 2 2 2 PRC-barrel domain B12-binding PF02310.19 gi|261403356|ref|YP_003247580.1| - 0.0066 16.5 1.9 0.036 14.1 0.1 2.4 2 0 0 2 2 2 1 B12 binding domain DHO_dh PF01180.21 gi|261403356|ref|YP_003247580.1| - 0.017 14.3 9.5 0.026 13.7 1.1 2.9 2 2 2 4 4 4 0 Dihydroorotate dehydrogenase Dicistro_VP4 PF11492.8 gi|261403356|ref|YP_003247580.1| - 0.048 13.6 0.8 0.44 10.5 0.5 2.6 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 G3P_antiterm PF04309.12 gi|261403356|ref|YP_003247580.1| - 0.13 11.6 0.1 0.13 11.6 0.1 3.2 3 1 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator EAL PF00563.20 gi|261403356|ref|YP_003247580.1| - 0.36 10.3 1.6 2 7.9 0.3 2.2 2 0 0 2 2 2 0 EAL domain ABC_tran PF00005.27 gi|261403357|ref|YP_003247581.1| - 1.9e-32 112.7 0.0 2.5e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261403357|ref|YP_003247581.1| - 3.5e-10 40.2 4.7 1.5e-06 28.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|261403357|ref|YP_003247581.1| - 1.8e-05 24.7 5.2 0.0042 16.9 2.1 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|261403357|ref|YP_003247581.1| - 4.4e-05 23.0 2.1 0.00048 19.6 2.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|261403357|ref|YP_003247581.1| - 7.9e-05 22.9 1.6 0.0015 18.8 1.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|261403357|ref|YP_003247581.1| - 0.00018 21.2 0.1 0.00032 20.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|261403357|ref|YP_003247581.1| - 0.00042 19.2 1.0 0.25 10.1 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|261403357|ref|YP_003247581.1| - 0.0025 18.3 1.5 0.0037 17.8 1.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|261403357|ref|YP_003247581.1| - 0.0033 17.5 0.4 0.053 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|261403357|ref|YP_003247581.1| - 0.0057 17.1 0.0 0.0095 16.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|261403357|ref|YP_003247581.1| - 0.0081 15.4 1.2 0.036 13.3 1.2 1.9 1 1 0 1 1 1 1 NB-ARC domain MeaB PF03308.16 gi|261403357|ref|YP_003247581.1| - 0.0086 15.1 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|261403357|ref|YP_003247581.1| - 0.031 14.2 0.6 0.061 13.2 0.1 1.7 2 0 0 2 2 2 0 RsgA GTPase SbcCD_C PF13558.6 gi|261403357|ref|YP_003247581.1| - 0.036 14.3 0.0 0.35 11.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|261403357|ref|YP_003247581.1| - 0.046 13.8 0.5 0.074 13.1 0.5 1.4 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_18 PF13238.6 gi|261403357|ref|YP_003247581.1| - 0.06 13.9 0.2 0.42 11.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|261403357|ref|YP_003247581.1| - 0.077 12.6 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|261403357|ref|YP_003247581.1| - 0.084 12.6 0.0 0.18 11.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|261403357|ref|YP_003247581.1| - 0.14 11.5 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Peptidase_U32 PF01136.19 gi|261403358|ref|YP_003247582.1| - 9.2e-82 273.7 0.0 1.3e-81 273.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family U32 GTP_EFTU_D2 PF03144.25 gi|261403358|ref|YP_003247582.1| - 0.00028 21.2 1.7 0.0011 19.3 1.7 2.1 1 1 1 2 2 2 1 Elongation factor Tu domain 2 Peptidase_U32_C PF16325.5 gi|261403358|ref|YP_003247582.1| - 0.0076 16.5 0.7 0.02 15.1 0.7 1.7 1 0 0 1 1 1 1 Peptidase family U32 C-terminal domain Radical_SAM PF04055.21 gi|261403358|ref|YP_003247582.1| - 0.039 14.3 0.1 0.18 12.2 0.0 2.1 2 0 0 2 2 2 0 Radical SAM superfamily Cys_box PF17869.1 gi|261403358|ref|YP_003247582.1| - 0.078 13.1 0.4 0.2 11.8 0.4 1.6 1 0 0 1 1 1 0 Anosmin cysteine rich domain YajC PF02699.15 gi|261403358|ref|YP_003247582.1| - 0.78 9.7 4.3 0.26 11.2 1.5 1.7 2 0 0 2 2 2 0 Preprotein translocase subunit Na_Ca_ex PF01699.24 gi|261403359|ref|YP_003247583.1| - 2.4e-51 173.7 38.2 9.4e-26 90.6 13.2 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein CCG PF02754.16 gi|261403360|ref|YP_003247584.1| - 8.8e-41 138.0 0.4 5e-20 71.5 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer2_3 PF13085.6 gi|261403360|ref|YP_003247584.1| - 1.3e-26 92.7 0.0 3.6e-26 91.3 0.0 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|261403360|ref|YP_003247584.1| - 4.4e-09 36.7 3.2 4.4e-09 36.7 3.2 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403360|ref|YP_003247584.1| - 1.8e-08 34.8 4.4 1.8e-08 34.8 4.4 2.8 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403360|ref|YP_003247584.1| - 1.3e-07 31.6 4.5 1.3e-07 31.6 4.5 3.3 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261403360|ref|YP_003247584.1| - 8.8e-07 29.1 4.6 0.00045 20.4 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403360|ref|YP_003247584.1| - 5.1e-06 27.3 4.4 5.1e-06 27.3 4.4 2.9 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|261403360|ref|YP_003247584.1| - 7.2e-06 26.5 6.1 7.2e-06 26.5 6.1 3.4 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403360|ref|YP_003247584.1| - 1.5e-05 25.0 8.3 1.5e-05 25.0 8.3 3.4 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer2 PF00111.27 gi|261403360|ref|YP_003247584.1| - 4.3e-05 23.4 0.1 4.3e-05 23.4 0.1 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|261403360|ref|YP_003247584.1| - 5.2e-05 23.2 0.0 0.00021 21.3 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain DUF547 PF04784.14 gi|261403360|ref|YP_003247584.1| - 0.037 14.1 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF547 Fer4_13 PF13370.6 gi|261403360|ref|YP_003247584.1| - 0.037 14.6 10.7 1.2 9.8 1.2 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|261403360|ref|YP_003247584.1| - 1 10.2 13.6 2 9.3 0.2 4.1 5 0 0 5 5 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403360|ref|YP_003247584.1| - 3.9 7.8 27.8 0.16 12.2 2.1 4.7 5 0 0 5 5 5 0 4Fe-4S binding domain DUF4974 PF16344.5 gi|261403361|ref|YP_003247585.1| - 0.3 11.1 6.0 2.5 8.2 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4974) MCR_C PF04609.12 gi|261403362|ref|YP_003247586.1| - 1.9e-121 404.2 1.3 2.4e-121 404.0 1.3 1.1 1 0 0 1 1 1 1 Methyl-coenzyme M reductase operon protein C DUF2209 PF09974.9 gi|261403363|ref|YP_003247587.1| - 1.4e-40 138.4 0.6 1.6e-40 138.2 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2209) SpoIIM PF01944.17 gi|261403364|ref|YP_003247588.1| - 0.00055 20.0 17.6 0.0023 18.0 15.7 2.4 1 1 0 1 1 1 1 Stage II sporulation protein M DUF2070 PF09843.9 gi|261403364|ref|YP_003247588.1| - 0.0031 15.9 9.1 0.0031 15.9 9.1 2.0 1 1 0 2 2 2 1 Predicted membrane protein (DUF2070) eIF-5_eIF-2B PF01873.17 gi|261403365|ref|YP_003247589.1| - 6.5e-34 116.3 0.0 8.1e-34 116.0 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 zf_C2H2_13 PF18508.1 gi|261403365|ref|YP_003247589.1| - 0.059 13.0 1.3 0.12 12.0 0.1 2.1 2 0 0 2 2 2 0 Zinc finger domain Lar_restr_allev PF14354.6 gi|261403365|ref|YP_003247589.1| - 0.11 12.9 0.6 2.1 8.8 1.8 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.7 gi|261403365|ref|YP_003247589.1| - 0.12 12.4 0.2 0.19 11.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.19 gi|261403366|ref|YP_003247590.1| - 4.4e-27 94.0 11.0 5.1e-27 93.8 11.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e HypA PF01155.19 gi|261403366|ref|YP_003247590.1| - 0.03 14.4 1.0 0.036 14.1 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Protamine_P2 PF00841.19 gi|261403366|ref|YP_003247590.1| - 0.1 13.1 10.4 0.11 13.1 10.4 1.1 1 0 0 1 1 1 0 Sperm histone P2 zf-Mss51 PF13824.6 gi|261403366|ref|YP_003247590.1| - 0.11 12.6 0.8 6.4 7.0 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 MraY_sig1 PF10555.9 gi|261403366|ref|YP_003247590.1| - 0.27 10.8 1.3 0.41 10.3 1.3 1.3 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Ribosomal_S14 PF00253.21 gi|261403366|ref|YP_003247590.1| - 0.55 10.0 11.5 3 7.7 4.3 2.1 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e Rubredoxin_2 PF18073.1 gi|261403366|ref|YP_003247590.1| - 2.3 8.0 6.3 13 5.6 0.5 2.4 2 1 0 2 2 2 0 Rubredoxin metal binding domain DUF2122 PF09895.9 gi|261403367|ref|YP_003247591.1| - 1.4e-29 102.6 0.0 1.8e-29 102.2 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) DUF4417 PF14386.6 gi|261403367|ref|YP_003247591.1| - 0.2 11.2 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4417) TP_methylase PF00590.20 gi|261403368|ref|YP_003247592.1| - 3.1e-53 180.9 0.1 3.6e-53 180.6 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|261403368|ref|YP_003247592.1| - 2.4e-05 24.8 0.0 4.5e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Cyt_b-c1_8 PF10890.8 gi|261403368|ref|YP_003247592.1| - 0.0051 17.2 0.1 0.01 16.2 0.1 1.5 1 0 0 1 1 1 1 Cytochrome b-c1 complex subunit 8 ATP-cone PF03477.16 gi|261403369|ref|YP_003247593.1| - 1.3e-07 32.0 1.0 4e-07 30.5 0.0 2.2 3 0 0 3 3 3 1 ATP cone domain AAA_18 PF13238.6 gi|261403369|ref|YP_003247593.1| - 4.8e-07 30.4 0.0 8.5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|261403369|ref|YP_003247593.1| - 0.00039 19.8 0.6 0.011 15.0 0.1 2.5 2 1 0 2 2 2 1 Zeta toxin AAA_33 PF13671.6 gi|261403369|ref|YP_003247593.1| - 0.0016 18.6 0.0 0.0065 16.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|261403369|ref|YP_003247593.1| - 0.038 14.2 0.1 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.6 gi|261403369|ref|YP_003247593.1| - 0.11 12.7 3.9 0.31 11.1 0.1 2.6 3 0 0 3 3 3 0 Cytidylate kinase-like family DUF2100 PF09873.9 gi|261403370|ref|YP_003247594.1| - 3.7e-79 265.6 22.3 4.1e-79 265.5 22.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2100) IBD PF10416.9 gi|261403370|ref|YP_003247594.1| - 0.047 13.7 1.4 0.047 13.7 1.4 2.0 2 0 0 2 2 2 0 Transcription-initiator DNA-binding domain IBD YflT PF11181.8 gi|261403370|ref|YP_003247594.1| - 0.048 14.2 0.4 0.16 12.5 0.1 2.0 2 0 0 2 2 2 0 Heat induced stress protein YflT DUF836 PF05768.14 gi|261403370|ref|YP_003247594.1| - 0.081 13.3 4.9 0.43 11.0 0.4 2.7 1 1 1 2 2 2 0 Glutaredoxin-like domain (DUF836) Saccharop_dh_N PF04455.12 gi|261403371|ref|YP_003247595.1| - 1.5e-38 131.2 0.0 4.2e-38 129.8 0.0 1.8 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|261403371|ref|YP_003247595.1| - 0.0094 15.7 0.2 0.027 14.2 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CxxCxxCC PF03692.15 gi|261403372|ref|YP_003247596.1| - 0.0017 19.0 10.1 0.55 11.0 10.1 2.3 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Pox_G5 PF04599.12 gi|261403372|ref|YP_003247596.1| - 0.089 11.8 0.4 0.099 11.6 0.4 1.2 1 0 0 1 1 1 0 Poxvirus G5 protein Aminotran_1_2 PF00155.21 gi|261403373|ref|YP_003247597.1| - 1.5e-37 129.7 0.0 1.9e-37 129.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|261403373|ref|YP_003247597.1| - 0.0012 17.7 0.0 0.0017 17.2 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase LUD_dom PF02589.15 gi|261403373|ref|YP_003247597.1| - 0.013 15.2 0.0 0.046 13.4 0.0 1.9 3 0 0 3 3 3 0 LUD domain Beta_elim_lyase PF01212.21 gi|261403373|ref|YP_003247597.1| - 0.051 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Beta-eliminating lyase ATP_bind_3 PF01171.20 gi|261403374|ref|YP_003247598.1| - 6.9e-10 39.0 0.0 2e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 PP-loop family ThiI PF02568.14 gi|261403374|ref|YP_003247598.1| - 2e-06 27.5 0.0 3.1e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|261403374|ref|YP_003247598.1| - 5.2e-05 22.2 0.0 9.5e-05 21.3 0.0 1.5 1 1 0 1 1 1 1 tRNA methyl transferase QueC PF06508.13 gi|261403374|ref|YP_003247598.1| - 9e-05 22.1 0.0 0.00023 20.8 0.0 1.7 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|261403374|ref|YP_003247598.1| - 0.00072 19.6 0.1 0.0014 18.7 0.0 1.7 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|261403374|ref|YP_003247598.1| - 0.00077 18.6 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Rhodanese PF00581.20 gi|261403374|ref|YP_003247598.1| - 0.0071 16.9 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain DUF1186 PF06685.11 gi|261403374|ref|YP_003247598.1| - 0.025 13.9 0.2 0.3 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1186) RecR PF02132.15 gi|261403374|ref|YP_003247598.1| - 0.047 13.3 1.3 0.047 13.3 1.3 3.2 3 0 0 3 3 3 0 RecR protein DUF4939 PF16297.5 gi|261403374|ref|YP_003247598.1| - 0.1 12.5 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4939) zf-C2H2_3 PF13878.6 gi|261403374|ref|YP_003247598.1| - 0.37 10.6 1.6 5.7 6.9 0.1 2.8 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO C1_2 PF03107.16 gi|261403374|ref|YP_003247598.1| - 0.94 9.8 5.8 7.9 6.9 0.6 3.0 3 0 0 3 3 3 0 C1 domain SpoU_methylase PF00588.19 gi|261403375|ref|YP_003247599.1| - 7.3e-38 129.9 0.0 1.1e-37 129.3 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family Topoisom_bac PF01131.20 gi|261403376|ref|YP_003247600.1| - 1.8e-72 244.6 9.3 7.3e-48 163.6 1.7 3.9 3 1 0 3 3 3 2 DNA topoisomerase Intein_splicing PF14890.6 gi|261403376|ref|YP_003247600.1| - 7.1e-31 106.9 5.0 7.1e-31 106.9 5.0 4.0 3 1 0 3 3 3 1 Intein splicing domain Toprim PF01751.22 gi|261403376|ref|YP_003247600.1| - 2.5e-23 82.3 0.5 2.5e-23 82.3 0.5 3.5 3 0 0 3 3 3 1 Toprim domain DEAD PF00270.29 gi|261403376|ref|YP_003247600.1| - 2e-12 47.3 0.1 5.8e-12 45.7 0.1 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|261403376|ref|YP_003247600.1| - 1.3e-10 41.6 3.8 8.9e-05 22.8 0.4 4.7 3 1 0 3 3 3 2 Helicase conserved C-terminal domain zf_Rg PF17915.1 gi|261403376|ref|YP_003247600.1| - 3.1e-09 36.1 5.4 6.5e-09 35.0 5.4 1.6 1 0 0 1 1 1 1 Reverse gyrase zinc finger ResIII PF04851.15 gi|261403376|ref|YP_003247600.1| - 3.3e-08 33.7 2.3 3.3e-08 33.7 2.3 4.2 4 1 1 5 5 5 1 Type III restriction enzyme, res subunit LAGLIDADG_3 PF14528.6 gi|261403376|ref|YP_003247600.1| - 4.5e-07 30.1 2.8 2.2e-06 27.9 0.6 3.2 2 0 0 2 2 2 1 LAGLIDADG-like domain Hom_end PF05204.14 gi|261403376|ref|YP_003247600.1| - 0.0069 16.5 2.9 0.31 11.2 0.1 3.3 3 0 0 3 3 3 1 Homing endonuclease SecA_DEAD PF07517.14 gi|261403376|ref|YP_003247600.1| - 0.039 13.2 0.2 0.11 11.7 0.2 1.9 1 0 0 1 1 1 0 SecA DEAD-like domain DUF4373 PF14297.6 gi|261403376|ref|YP_003247600.1| - 9 7.2 9.1 5 8.0 0.1 4.6 5 0 0 5 5 4 0 Domain of unknown function (DUF4373) CobN-Mg_chel PF02514.16 gi|261403377|ref|YP_003247601.1| - 0 1122.8 0.0 0 1121.0 0.0 1.7 1 1 0 1 1 1 1 CobN/Magnesium Chelatase tRNA-synt_2 PF00152.20 gi|261403378|ref|YP_003247602.1| - 1.3e-95 320.1 0.0 1.5e-95 319.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|261403378|ref|YP_003247602.1| - 1.7e-16 60.0 0.3 3.4e-16 59.0 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|261403378|ref|YP_003247602.1| - 0.0022 17.5 0.3 0.053 13.0 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Beta_propel PF09826.9 gi|261403379|ref|YP_003247603.1| - 5.5e-110 368.6 8.2 2.5e-109 366.5 8.2 1.8 1 1 0 1 1 1 1 Beta propeller domain ETRAMP PF09716.10 gi|261403379|ref|YP_003247603.1| - 0.048 13.7 2.4 0.14 12.2 2.4 1.9 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) SBP56 PF05694.11 gi|261403379|ref|YP_003247603.1| - 0.072 11.9 0.0 0.62 8.8 0.0 2.3 2 0 0 2 2 2 0 56kDa selenium binding protein (SBP56) NAC PF01849.18 gi|261403379|ref|YP_003247603.1| - 0.17 11.9 0.8 0.71 9.9 0.1 2.4 3 0 0 3 3 3 0 NAC domain DUF4364 PF14277.6 gi|261403380|ref|YP_003247604.1| - 0.00077 19.2 0.2 0.089 12.5 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4364) AA_permease_C PF13906.6 gi|261403380|ref|YP_003247604.1| - 2.8 8.1 11.0 1.1 9.4 0.8 2.5 2 0 0 2 2 2 0 C-terminus of AA_permease Baculo_E56 PF04639.12 gi|261403380|ref|YP_003247604.1| - 5.3 6.2 9.3 7.8 5.7 0.7 2.0 2 0 0 2 2 2 0 Baculoviral E56 protein, specific to ODV envelope DHHC PF01529.20 gi|261403380|ref|YP_003247604.1| - 6.7 6.8 7.9 15 5.7 7.9 1.6 1 1 0 1 1 1 0 DHHC palmitoyltransferase HTH_5 PF01022.20 gi|261403381|ref|YP_003247605.1| - 1.5e-06 28.0 0.1 1.8e-06 27.7 0.1 1.0 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family dUTPase PF00692.19 gi|261403382|ref|YP_003247606.1| - 3.3e-10 39.7 0.0 5e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|261403382|ref|YP_003247606.1| - 0.0037 16.1 0.0 0.0046 15.8 0.0 1.3 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 4HFCP_synth PF04476.13 gi|261403383|ref|YP_003247607.1| - 2.9e-92 308.5 0.2 3.2e-92 308.4 0.2 1.0 1 0 0 1 1 1 1 4-HFC-P synthase DeoC PF01791.9 gi|261403383|ref|YP_003247607.1| - 0.0023 17.6 3.9 0.089 12.4 2.5 2.9 2 1 0 2 2 2 1 DeoC/LacD family aldolase PGM_PMM_I PF02878.16 gi|261403384|ref|YP_003247608.1| - 4.2e-34 117.2 0.1 9.1e-34 116.1 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|261403384|ref|YP_003247608.1| - 1e-23 83.7 0.0 1.8e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|261403384|ref|YP_003247608.1| - 9.8e-20 71.1 0.2 4.1e-19 69.1 0.1 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|261403384|ref|YP_003247608.1| - 9.2e-12 45.0 0.0 4.5e-11 42.8 0.0 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Coatomer_b_Cpla PF14806.6 gi|261403384|ref|YP_003247608.1| - 0.022 14.7 0.2 0.047 13.7 0.2 1.5 1 0 0 1 1 1 0 Coatomer beta subunit appendage platform Alveol-reg_P311 PF11092.8 gi|261403384|ref|YP_003247608.1| - 0.15 12.2 0.3 0.37 11.0 0.0 1.7 2 0 0 2 2 2 0 Neuronal protein 3.1 (p311) NTP_transferase PF00483.23 gi|261403385|ref|YP_003247609.1| - 7.5e-43 146.9 0.1 1.1e-42 146.3 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|261403385|ref|YP_003247609.1| - 4.4e-16 57.9 17.4 3.6e-05 23.3 0.8 4.6 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|261403385|ref|YP_003247609.1| - 4.1e-14 53.2 0.0 5.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|261403385|ref|YP_003247609.1| - 1.2e-05 25.1 0.0 3.6e-05 23.6 0.0 1.7 1 1 1 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|261403385|ref|YP_003247609.1| - 0.00043 20.0 23.1 0.059 13.1 0.2 5.5 5 1 1 6 6 6 4 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|261403385|ref|YP_003247609.1| - 0.026 14.8 0.4 0.026 14.8 0.4 2.6 3 0 0 3 3 3 0 Polymer-forming cytoskeletal SepSecS PF05889.13 gi|261403387|ref|YP_003247611.1| - 9.2e-32 110.2 0.1 1.5e-31 109.5 0.1 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|261403387|ref|YP_003247611.1| - 8.6e-16 57.8 0.0 1.5e-15 57.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|261403387|ref|YP_003247611.1| - 0.00033 20.0 0.0 0.00056 19.3 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|261403387|ref|YP_003247611.1| - 0.0083 15.5 0.0 0.012 14.9 0.0 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|261403387|ref|YP_003247611.1| - 0.017 13.9 0.0 0.087 11.5 0.0 1.9 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Polyhedrin PF00738.18 gi|261403387|ref|YP_003247611.1| - 0.022 14.1 0.0 0.052 12.9 0.0 1.6 1 1 0 1 1 1 0 Polyhedrin HTH_3 PF01381.22 gi|261403388|ref|YP_003247612.1| - 8.8e-11 41.7 2.2 8.5e-10 38.5 2.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_25 PF13413.6 gi|261403388|ref|YP_003247612.1| - 2e-07 30.8 0.8 3.3e-07 30.1 0.8 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|261403388|ref|YP_003247612.1| - 7.5e-06 26.2 0.0 1.4e-05 25.3 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|261403388|ref|YP_003247612.1| - 1.9e-05 24.6 1.2 3.3e-05 23.8 1.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Death PF00531.22 gi|261403388|ref|YP_003247612.1| - 0.0056 16.8 0.2 0.01 16.0 0.2 1.4 1 0 0 1 1 1 1 Death domain zf-C4_ClpX PF06689.13 gi|261403388|ref|YP_003247612.1| - 0.0082 16.0 1.5 0.012 15.4 1.5 1.3 1 0 0 1 1 1 1 ClpX C4-type zinc finger DUF4635 PF15466.6 gi|261403388|ref|YP_003247612.1| - 0.043 13.3 0.6 0.082 12.4 0.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4635) HTH_37 PF13744.6 gi|261403388|ref|YP_003247612.1| - 0.06 13.3 0.0 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Pou PF00157.17 gi|261403388|ref|YP_003247612.1| - 0.085 12.8 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Pou domain - N-terminal to homeobox domain DUF2316 PF10078.9 gi|261403388|ref|YP_003247612.1| - 0.095 12.9 0.1 0.66 10.2 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) Zn-ribbon_8 PF09723.10 gi|261403388|ref|YP_003247612.1| - 0.1 12.8 0.6 0.2 11.8 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HTH_23 PF13384.6 gi|261403388|ref|YP_003247612.1| - 0.14 12.0 0.0 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain NMD3 PF04981.13 gi|261403388|ref|YP_003247612.1| - 1.5 8.2 4.6 1.5 8.3 1.2 2.0 1 1 0 2 2 2 0 NMD3 family DUF1799 PF08809.11 gi|261403389|ref|YP_003247613.1| - 0.018 15.2 0.1 0.022 14.9 0.1 1.1 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) Med21 PF11221.8 gi|261403389|ref|YP_003247613.1| - 0.069 13.4 2.9 0.076 13.3 2.9 1.1 1 0 0 1 1 1 0 Subunit 21 of Mediator complex TP_methylase PF00590.20 gi|261403390|ref|YP_003247614.1| - 1.8e-21 77.1 0.1 2.3e-21 76.7 0.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NAF PF03822.14 gi|261403390|ref|YP_003247614.1| - 0.17 12.1 0.0 2.1 8.6 0.0 2.4 2 0 0 2 2 2 0 NAF domain Na_H_Exchanger PF00999.21 gi|261403391|ref|YP_003247615.1| - 7.8e-68 229.0 48.7 9.1e-68 228.8 48.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CcmF_C PF16327.5 gi|261403391|ref|YP_003247615.1| - 0.018 14.3 0.3 0.018 14.3 0.3 2.6 3 0 0 3 3 3 0 Cytochrome c-type biogenesis protein CcmF C-terminal Peptidase_M22 PF00814.25 gi|261403392|ref|YP_003247616.1| - 2.6e-90 302.8 0.0 3.5e-90 302.4 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|261403392|ref|YP_003247616.1| - 4.1e-06 26.3 0.7 5.7e-05 22.6 0.7 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|261403392|ref|YP_003247616.1| - 4.6e-05 22.9 4.6 7.7e-05 22.2 4.6 1.3 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|261403392|ref|YP_003247616.1| - 0.00026 20.7 0.4 0.00061 19.4 0.4 1.6 1 0 0 1 1 1 1 RIO1 family Pkinase_Tyr PF07714.17 gi|261403392|ref|YP_003247616.1| - 0.0033 16.7 0.4 0.01 15.1 0.4 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 gi|261403392|ref|YP_003247616.1| - 0.021 13.6 0.5 0.04 12.7 0.5 1.4 1 0 0 1 1 1 0 Fungal protein kinase Carbam_trans_N PF02543.15 gi|261403392|ref|YP_003247616.1| - 0.033 13.9 0.1 0.08 12.6 0.0 1.6 2 0 0 2 2 2 0 Carbamoyltransferase N-terminus BcrAD_BadFG PF01869.20 gi|261403392|ref|YP_003247616.1| - 0.041 13.4 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family APH PF01636.23 gi|261403392|ref|YP_003247616.1| - 0.043 13.7 0.0 1 9.2 0.0 2.2 1 1 1 2 2 2 0 Phosphotransferase enzyme family NiFeSe_Hases PF00374.19 gi|261403393|ref|YP_003247617.1| - 1.4e-28 100.1 8.0 1.4e-17 63.8 0.1 4.5 1 1 3 4 4 4 4 Nickel-dependent hydrogenase Complex1_49kDa PF00346.19 gi|261403393|ref|YP_003247617.1| - 0.076 12.1 0.1 0.39 9.8 0.0 1.9 2 0 0 2 2 2 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HycI PF01750.18 gi|261403394|ref|YP_003247618.1| - 2.8e-38 130.7 2.7 3.5e-38 130.4 2.7 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease Methyltransf_31 PF13847.6 gi|261403394|ref|YP_003247618.1| - 0.007 16.2 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 gi|261403394|ref|YP_003247618.1| - 0.014 14.5 0.0 0.019 14.1 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent Topo-VIb_trans PF09239.11 gi|261403394|ref|YP_003247618.1| - 0.058 13.2 0.1 0.089 12.6 0.1 1.3 1 0 0 1 1 1 0 Topoisomerase VI B subunit, transducer Ubie_methyltran PF01209.18 gi|261403394|ref|YP_003247618.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_20 PF12147.8 gi|261403394|ref|YP_003247618.1| - 0.18 10.9 0.0 0.24 10.5 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase Oxidored_q6 PF01058.22 gi|261403395|ref|YP_003247619.1| - 4.7e-33 113.8 2.1 4.7e-33 113.8 2.1 2.2 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|261403395|ref|YP_003247619.1| - 4.8e-11 42.0 13.9 1.5e-08 34.1 2.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403395|ref|YP_003247619.1| - 1.1e-09 37.9 11.9 1e-05 25.3 2.2 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403395|ref|YP_003247619.1| - 1.2e-07 31.8 12.0 1.2e-07 31.8 12.0 2.1 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403395|ref|YP_003247619.1| - 8e-07 29.6 12.8 8e-07 29.6 12.8 2.5 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403395|ref|YP_003247619.1| - 2.6e-06 27.5 12.5 2.6e-06 27.5 12.5 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403395|ref|YP_003247619.1| - 4.4e-06 26.7 25.8 4.2e-05 23.6 13.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403395|ref|YP_003247619.1| - 2e-05 25.4 11.0 0.00057 20.8 1.9 2.8 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261403395|ref|YP_003247619.1| - 0.00021 21.2 2.9 0.00021 21.2 2.9 3.5 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|261403395|ref|YP_003247619.1| - 0.0034 18.1 0.5 0.0034 18.1 0.5 3.2 2 2 1 3 3 3 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|261403395|ref|YP_003247619.1| - 0.0099 16.3 3.3 0.0099 16.3 3.3 3.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261403395|ref|YP_003247619.1| - 0.054 14.1 16.9 0.065 13.8 2.1 3.5 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|261403395|ref|YP_003247619.1| - 5.6 7.6 27.3 0.39 11.3 3.5 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403395|ref|YP_003247619.1| - 7 7.2 27.7 0.15 12.6 3.3 3.3 2 1 2 4 4 3 0 4Fe-4S dicluster domain FrhB_FdhB_C PF04432.13 gi|261403396|ref|YP_003247620.1| - 1.1e-47 161.7 0.1 1.6e-47 161.2 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|261403396|ref|YP_003247620.1| - 7.5e-26 90.1 0.1 1.2e-25 89.5 0.1 1.3 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term FAD_binding_2 PF00890.24 gi|261403397|ref|YP_003247621.1| - 2.7e-104 349.5 0.0 3.4e-104 349.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|261403397|ref|YP_003247621.1| - 1e-24 87.0 0.0 2.1e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|261403397|ref|YP_003247621.1| - 3.3e-07 29.8 0.8 0.0084 15.4 0.0 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DUF1156 PF06634.12 gi|261403398|ref|YP_003247622.1| - 4.3e-08 33.1 0.0 1.3e-07 31.6 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) UPF0020 PF01170.18 gi|261403398|ref|YP_003247622.1| - 5.2e-07 29.5 0.0 0.0056 16.4 0.0 3.0 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|261403398|ref|YP_003247622.1| - 3.6e-05 23.5 0.0 0.34 10.5 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 DUF3452 PF11934.8 gi|261403398|ref|YP_003247622.1| - 0.043 13.4 1.6 0.06 12.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3452) Peptidase_C25 PF01364.18 gi|261403398|ref|YP_003247622.1| - 0.071 12.3 1.2 4 6.5 0.2 2.3 2 0 0 2 2 2 0 Peptidase family C25 zinc_ribbon_4 PF13717.6 gi|261403398|ref|YP_003247622.1| - 0.1 12.5 0.3 6.5 6.8 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain ATPase_2 PF01637.18 gi|261403399|ref|YP_003247623.1| - 8.4e-62 209.1 8.5 1.2e-61 208.7 8.5 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|261403399|ref|YP_003247623.1| - 1.1e-10 42.1 0.0 2.1e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|261403399|ref|YP_003247623.1| - 1.2e-08 35.1 3.0 3.8e-05 23.7 0.1 2.7 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|261403399|ref|YP_003247623.1| - 2.6e-08 34.2 0.0 6e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|261403399|ref|YP_003247623.1| - 9.3e-08 32.6 0.1 2.8e-07 31.0 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RecA PF00154.21 gi|261403399|ref|YP_003247623.1| - 0.00049 19.7 0.0 0.00082 18.9 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein NACHT PF05729.12 gi|261403399|ref|YP_003247623.1| - 0.0029 17.6 0.0 0.034 14.1 0.0 2.1 1 1 0 1 1 1 1 NACHT domain ResIII PF04851.15 gi|261403399|ref|YP_003247623.1| - 0.0073 16.3 0.6 0.016 15.2 0.6 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit RNA12 PF10443.9 gi|261403399|ref|YP_003247623.1| - 0.0081 14.9 0.3 1.4 7.6 0.0 2.4 3 0 0 3 3 3 2 RNA12 protein T2SSE PF00437.20 gi|261403399|ref|YP_003247623.1| - 0.015 14.4 0.0 0.029 13.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|261403399|ref|YP_003247623.1| - 0.017 14.4 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|261403399|ref|YP_003247623.1| - 0.027 14.4 0.2 0.073 13.0 0.2 1.7 1 1 0 1 1 1 0 NTPase TK PF00265.18 gi|261403399|ref|YP_003247623.1| - 0.038 13.9 0.4 0.78 9.6 0.0 2.7 3 0 0 3 3 3 0 Thymidine kinase AAA_24 PF13479.6 gi|261403399|ref|YP_003247623.1| - 0.041 13.6 1.0 0.084 12.6 1.0 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|261403399|ref|YP_003247623.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 gi|261403399|ref|YP_003247623.1| - 0.18 11.4 0.0 10 5.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF499 PF04465.12 gi|261403400|ref|YP_003247624.1| - 9e-292 970.6 43.3 1.1e-291 970.3 43.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF499) Stealth_CR2 PF11380.8 gi|261403400|ref|YP_003247624.1| - 0.079 13.1 0.9 5.2 7.3 0.6 3.1 2 0 0 2 2 2 0 Stealth protein CR2, conserved region 2 Helicase_C PF00271.31 gi|261403402|ref|YP_003247626.1| - 1e-19 70.9 1.8 1.5e-18 67.1 0.0 3.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|261403402|ref|YP_003247626.1| - 5.9e-18 64.7 1.6 1.6e-17 63.3 1.0 2.1 1 1 1 2 2 2 1 SNF2 family N-terminal domain DUF3883 PF13020.6 gi|261403402|ref|YP_003247626.1| - 1.3e-15 57.2 1.9 4.5e-15 55.5 1.9 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ResIII PF04851.15 gi|261403402|ref|YP_003247626.1| - 5.4e-12 46.0 3.6 2.2e-11 44.0 0.1 3.2 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|261403402|ref|YP_003247626.1| - 1.7e-06 27.9 0.8 1.4e-05 24.9 0.0 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 gi|261403402|ref|YP_003247626.1| - 4.4e-05 22.8 0.1 0.00014 21.2 0.1 1.8 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Flavi_DEAD PF07652.14 gi|261403402|ref|YP_003247626.1| - 0.007 16.3 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Flavivirus DEAD domain Toprim PF01751.22 gi|261403402|ref|YP_003247626.1| - 0.081 13.2 6.1 1.7 8.9 0.1 4.5 4 1 0 4 4 4 0 Toprim domain SIS_2 PF13580.6 gi|261403402|ref|YP_003247626.1| - 0.12 12.4 0.1 0.46 10.5 0.1 2.0 1 0 0 1 1 1 0 SIS domain RAMPs PF03787.15 gi|261403403|ref|YP_003247627.1| - 1.7e-21 77.2 8.9 1.7e-21 77.2 8.9 1.9 2 1 0 2 2 2 1 RAMP superfamily Cytochrom_B562 PF07361.11 gi|261403403|ref|YP_003247627.1| - 0.14 12.8 1.4 0.15 12.7 0.1 1.7 2 0 0 2 2 2 0 Cytochrome b562 RAMPs PF03787.15 gi|261403404|ref|YP_003247628.1| - 1.1e-07 32.1 6.9 1.1e-07 32.1 6.9 2.3 2 0 0 2 2 2 1 RAMP superfamily Pneumovirus_M2 PF06436.11 gi|261403404|ref|YP_003247628.1| - 0.026 14.0 0.2 0.06 12.8 0.2 1.6 1 0 0 1 1 1 0 Pneumovirus matrix protein 2 (M2) Cys_rich_CPCC PF14206.6 gi|261403405|ref|YP_003247629.1| - 0.36 10.7 1.5 8 6.4 0.8 2.6 2 0 0 2 2 2 0 Cysteine-rich CPCC AIG2_2 PF13772.6 gi|261403406|ref|YP_003247630.1| - 2.5e-19 69.5 0.1 3.2e-19 69.1 0.1 1.1 1 0 0 1 1 1 1 AIG2-like family GGACT PF06094.12 gi|261403406|ref|YP_003247630.1| - 2.5e-15 57.2 0.2 3.1e-15 56.9 0.2 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like ChaC PF04752.12 gi|261403406|ref|YP_003247630.1| - 0.0048 17.0 0.1 0.0056 16.7 0.1 1.2 1 0 0 1 1 1 1 ChaC-like protein RAMPs PF03787.15 gi|261403407|ref|YP_003247631.1| - 2.8e-21 76.6 6.9 5.2e-21 75.7 6.9 1.4 1 0 0 1 1 1 1 RAMP superfamily PBECR4 PF18813.1 gi|261403407|ref|YP_003247631.1| - 0.011 16.0 5.5 0.3 11.3 0.4 2.8 3 0 0 3 3 3 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4 DUF1283 PF06932.11 gi|261403408|ref|YP_003247632.1| - 0.048 13.9 0.3 0.08 13.2 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1283) RNase_J_C PF17770.1 gi|261403408|ref|YP_003247632.1| - 0.21 12.7 2.5 0.28 12.3 0.7 1.9 2 1 0 2 2 2 0 Ribonuclease J C-terminal domain RAMPs PF03787.15 gi|261403409|ref|YP_003247633.1| - 0.015 15.3 10.0 0.011 15.8 3.6 2.6 2 1 0 2 2 2 0 RAMP superfamily Cpn60_TCP1 PF00118.24 gi|261403410|ref|YP_003247634.1| - 1.5e-185 617.6 25.4 1.7e-185 617.4 25.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family EF-G-binding_N PF07299.11 gi|261403410|ref|YP_003247634.1| - 0.21 12.2 0.2 0.21 12.2 0.2 3.2 4 1 0 4 4 4 0 Elongation factor G-binding protein, N-terminal tRNA-synt_His PF13393.6 gi|261403411|ref|YP_003247635.1| - 2.1e-70 237.5 0.0 2.7e-70 237.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|261403411|ref|YP_003247635.1| - 3.9e-14 53.0 0.0 9.3e-14 51.8 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|261403411|ref|YP_003247635.1| - 1e-12 48.0 1.1 1e-12 48.0 1.1 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2 PF00152.20 gi|261403411|ref|YP_003247635.1| - 6.8e-07 28.7 2.5 0.0015 17.6 0.9 3.0 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2d PF01409.20 gi|261403411|ref|YP_003247635.1| - 1.9e-05 24.3 0.1 0.0001 21.9 0.0 2.2 2 1 0 3 3 3 1 tRNA synthetases class II core domain (F) YqzH PF14164.6 gi|261403411|ref|YP_003247635.1| - 0.087 12.9 2.2 0.27 11.4 0.1 2.7 3 0 0 3 3 3 0 YqzH-like protein HMw1_D2 PF18254.1 gi|261403411|ref|YP_003247635.1| - 0.17 12.3 0.0 0.35 11.2 0.0 1.4 1 0 0 1 1 1 0 HMW1 domain 2 RimK PF08443.11 gi|261403412|ref|YP_003247636.1| - 7.1e-69 231.2 0.5 9.1e-69 230.8 0.5 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|261403412|ref|YP_003247636.1| - 3.6e-12 46.6 0.5 6.1e-12 45.9 0.5 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|261403412|ref|YP_003247636.1| - 2.5e-10 40.0 0.1 4e-10 39.4 0.1 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|261403412|ref|YP_003247636.1| - 6.9e-07 28.8 0.4 0.014 14.7 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|261403412|ref|YP_003247636.1| - 2.1e-06 27.2 0.3 0.01 15.1 0.3 2.8 1 1 0 1 1 1 1 YheC/D like ATP-grasp CPSase_L_D2 PF02786.17 gi|261403412|ref|YP_003247636.1| - 1.6e-05 24.5 0.0 3e-05 23.6 0.0 1.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|261403412|ref|YP_003247636.1| - 0.0011 18.6 0.0 0.0025 17.4 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain DisA_N PF02457.16 gi|261403413|ref|YP_003247637.1| - 5.3e-23 80.8 1.8 8.2e-23 80.2 0.2 2.1 2 1 1 3 3 3 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|261403413|ref|YP_003247637.1| - 6.4e-10 39.3 2.1 6e-09 36.2 0.1 3.1 3 1 0 3 3 3 1 Pyruvate kinase, alpha/beta domain DUF4467 PF14729.6 gi|261403413|ref|YP_003247637.1| - 0.069 13.5 0.3 0.55 10.6 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function with cystatin-like fold (DUF4467) Aconitase PF00330.20 gi|261403414|ref|YP_003247638.1| - 1.6e-102 343.9 6.9 8e-65 219.6 3.1 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|261403414|ref|YP_003247638.1| - 0.0043 15.8 0.1 0.0064 15.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Lipoprotein_18 PF06804.11 gi|261403414|ref|YP_003247638.1| - 0.1 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 NlpB/DapX lipoprotein CBS PF00571.28 gi|261403415|ref|YP_003247639.1| - 1.8e-18 66.7 4.8 3.8e-11 43.3 0.2 2.4 2 0 0 2 2 2 2 CBS domain sCache_3_2 PF17203.4 gi|261403415|ref|YP_003247639.1| - 0.0079 16.3 0.1 0.25 11.5 0.1 2.3 1 1 1 2 2 2 1 Single cache domain 3 TAFII28 PF04719.14 gi|261403415|ref|YP_003247639.1| - 0.087 12.9 1.1 1.2 9.3 0.0 2.8 2 1 1 3 3 3 0 hTAFII28-like protein conserved region Sar8_2 PF03058.14 gi|261403415|ref|YP_003247639.1| - 0.19 12.3 0.0 0.39 11.3 0.0 1.5 1 0 0 1 1 1 0 Sar8.2 family HTH_11 PF08279.12 gi|261403416|ref|YP_003247640.1| - 1.9e-13 50.1 0.0 3.2e-13 49.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HrcA_DNA-bdg PF03444.15 gi|261403416|ref|YP_003247640.1| - 3.5e-05 23.4 0.0 0.00017 21.2 0.0 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Tubulin PF00091.25 gi|261403417|ref|YP_003247641.1| - 8e-44 150.2 1.9 1.2e-43 149.6 1.9 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|261403417|ref|YP_003247641.1| - 9.6e-38 128.4 4.7 5.1e-37 126.1 0.2 3.3 2 1 0 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|261403417|ref|YP_003247641.1| - 0.0045 16.4 0.0 0.0093 15.3 0.0 1.4 1 0 0 1 1 1 1 ThiF family AlaDh_PNT_C PF01262.21 gi|261403417|ref|YP_003247641.1| - 0.0096 15.2 2.2 0.021 14.1 2.2 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|261403417|ref|YP_003247641.1| - 0.047 14.0 1.5 0.85 9.9 0.5 2.8 2 0 0 2 2 2 0 TrkA-N domain Tubulin_2 PF13809.6 gi|261403417|ref|YP_003247641.1| - 3.1 6.9 9.0 5.4 6.1 3.7 2.5 1 1 1 2 2 2 0 Tubulin like HTH_3 PF01381.22 gi|261403418|ref|YP_003247642.1| - 4.4e-08 33.1 0.0 9.4e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_26 PF13443.6 gi|261403418|ref|YP_003247642.1| - 0.0018 18.7 0.0 0.004 17.6 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain PrpR_N PF06506.11 gi|261403418|ref|YP_003247642.1| - 0.0053 16.4 0.9 0.0099 15.5 0.9 1.5 1 1 0 1 1 1 1 Propionate catabolism activator AbiJ_NTD3 PF18860.1 gi|261403418|ref|YP_003247642.1| - 0.0063 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AbiJ N-terminal domain 3 REPA_OB_2 PF16900.5 gi|261403418|ref|YP_003247642.1| - 0.022 14.7 0.1 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 Replication protein A OB domain HTH_17 PF12728.7 gi|261403418|ref|YP_003247642.1| - 0.039 14.1 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CTP-dep_RFKase PF01982.16 gi|261403418|ref|YP_003247642.1| - 0.15 12.2 1.3 0.27 11.3 0.8 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF120 MTS PF05175.14 gi|261403419|ref|YP_003247643.1| - 1.4e-19 70.2 0.1 1.8e-17 63.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|261403419|ref|YP_003247643.1| - 6.8e-17 61.8 1.5 8e-17 61.6 0.6 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|261403419|ref|YP_003247643.1| - 1.3e-15 57.5 0.0 1.7e-15 57.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403419|ref|YP_003247643.1| - 4.2e-12 46.6 0.0 3e-11 43.9 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|261403419|ref|YP_003247643.1| - 1.8e-08 34.2 0.0 2.8e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|261403419|ref|YP_003247643.1| - 4.1e-08 33.2 0.2 5.6e-08 32.8 0.2 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|261403419|ref|YP_003247643.1| - 8.2e-08 32.2 0.0 2.7e-07 30.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|261403419|ref|YP_003247643.1| - 1.8e-07 31.7 0.0 7.2e-07 29.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|261403419|ref|YP_003247643.1| - 9.4e-07 29.5 0.1 4.7e-06 27.3 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 gi|261403419|ref|YP_003247643.1| - 1.8e-06 27.3 0.2 3.8e-06 26.3 0.2 1.5 1 1 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase Methyltransf_4 PF02390.17 gi|261403419|ref|YP_003247643.1| - 1.2e-05 24.9 1.0 9.6e-05 21.9 0.3 2.0 2 0 0 2 2 2 1 Putative methyltransferase UPF0020 PF01170.18 gi|261403419|ref|YP_003247643.1| - 2.6e-05 24.0 0.0 3.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 DUF43 PF01861.16 gi|261403419|ref|YP_003247643.1| - 7.9e-05 22.0 0.1 0.00012 21.4 0.1 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain Methyltransf_16 PF10294.9 gi|261403419|ref|YP_003247643.1| - 0.00016 21.5 0.1 0.00024 20.9 0.1 1.3 1 0 0 1 1 1 1 Lysine methyltransferase N6_Mtase PF02384.16 gi|261403419|ref|YP_003247643.1| - 0.00017 20.9 0.0 0.00019 20.8 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase tRNA_U5-meth_tr PF05958.11 gi|261403419|ref|YP_003247643.1| - 0.00019 20.5 0.5 0.00029 20.0 0.5 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TRM PF02005.16 gi|261403419|ref|YP_003247643.1| - 0.00028 20.2 0.1 0.0009 18.5 0.1 1.7 2 0 0 2 2 2 1 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.15 gi|261403419|ref|YP_003247643.1| - 0.00032 20.5 0.3 0.028 14.1 0.1 2.0 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_24 PF13578.6 gi|261403419|ref|YP_003247643.1| - 0.00039 21.4 0.0 0.00063 20.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261403419|ref|YP_003247643.1| - 0.00084 19.3 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|261403419|ref|YP_003247643.1| - 0.0013 17.9 0.3 0.005 16.0 0.3 1.9 1 1 0 1 1 1 1 O-methyltransferase PCMT PF01135.19 gi|261403419|ref|YP_003247643.1| - 0.0031 17.3 0.0 0.0045 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|261403419|ref|YP_003247643.1| - 0.0031 17.1 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase FtsJ PF01728.19 gi|261403419|ref|YP_003247643.1| - 0.0041 17.3 0.0 0.0068 16.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 gi|261403419|ref|YP_003247643.1| - 0.019 14.3 0.2 0.056 12.8 0.1 1.7 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|261403419|ref|YP_003247643.1| - 0.019 14.2 0.0 0.1 11.9 0.0 1.9 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|261403419|ref|YP_003247643.1| - 0.022 13.7 0.0 0.04 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|261403419|ref|YP_003247643.1| - 0.024 13.7 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase ADH_zinc_N PF00107.26 gi|261403419|ref|YP_003247643.1| - 0.053 13.5 0.1 0.16 11.9 0.1 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_8 PF05148.15 gi|261403419|ref|YP_003247643.1| - 0.058 13.2 0.4 0.79 9.5 0.1 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase DUF2431 PF10354.9 gi|261403419|ref|YP_003247643.1| - 0.093 13.0 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2431) tRNA_synthFbeta PF17759.1 gi|261403419|ref|YP_003247643.1| - 0.13 11.6 0.1 3 7.2 0.0 2.1 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain rRNA_methylase PF06962.12 gi|261403419|ref|YP_003247643.1| - 0.15 12.0 0.0 0.44 10.5 0.0 1.7 2 0 0 2 2 2 0 Putative rRNA methylase TPMT PF05724.11 gi|261403419|ref|YP_003247643.1| - 0.22 11.2 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_11 PF08241.12 gi|261403421|ref|YP_003247645.1| - 9.2e-19 67.9 0.0 1.6e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403421|ref|YP_003247645.1| - 3.1e-14 53.4 0.0 5.5e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403421|ref|YP_003247645.1| - 1.7e-12 47.4 0.0 1.9e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|261403421|ref|YP_003247645.1| - 8.4e-11 42.5 0.0 1.7e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|261403421|ref|YP_003247645.1| - 3.5e-10 39.9 0.9 9.5e-10 38.5 0.9 1.7 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|261403421|ref|YP_003247645.1| - 4e-10 39.3 0.1 5.5e-10 38.8 0.1 1.2 1 0 0 1 1 1 1 DREV methyltransferase Ubie_methyltran PF01209.18 gi|261403421|ref|YP_003247645.1| - 2.7e-08 33.4 0.4 7.1e-08 32.1 0.2 1.8 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|261403421|ref|YP_003247645.1| - 1.8e-05 24.7 0.2 2.6e-05 24.2 0.2 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|261403421|ref|YP_003247645.1| - 0.0084 14.7 0.0 0.017 13.7 0.0 1.4 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CheR PF01739.18 gi|261403421|ref|YP_003247645.1| - 0.057 12.9 0.3 0.095 12.2 0.3 1.5 1 0 0 1 1 1 0 CheR methyltransferase, SAM binding domain PDT PF00800.18 gi|261403422|ref|YP_003247646.1| - 3.6e-55 186.6 0.0 4.7e-55 186.2 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|261403422|ref|YP_003247646.1| - 5.5e-10 38.8 0.0 1.1e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 ACT domain HP0268 PF18618.1 gi|261403422|ref|YP_003247646.1| - 0.0029 18.0 0.1 0.0091 16.4 0.1 1.8 1 0 0 1 1 1 1 HP0268 ACT_4 PF13291.6 gi|261403422|ref|YP_003247646.1| - 0.0082 16.7 0.0 0.024 15.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain AdoMet_dc PF02675.15 gi|261403422|ref|YP_003247646.1| - 0.017 15.4 0.0 0.055 13.7 0.0 1.8 1 1 0 1 1 1 0 S-adenosylmethionine decarboxylase OCD_Mu_crystall PF02423.15 gi|261403422|ref|YP_003247646.1| - 0.17 10.8 0.0 6.5 5.6 0.0 2.1 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family Pyr_redox_2 PF07992.14 gi|261403423|ref|YP_003247647.1| - 7.5e-35 120.6 0.2 1e-30 107.0 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|261403423|ref|YP_003247647.1| - 1.7e-13 50.9 6.2 3.3e-10 40.4 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|261403423|ref|YP_003247647.1| - 7.3e-09 35.7 0.7 8.2e-07 29.2 0.2 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|261403423|ref|YP_003247647.1| - 1.6e-08 34.6 0.8 0.00095 19.1 0.0 2.9 2 1 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|261403423|ref|YP_003247647.1| - 1.7e-08 33.9 0.8 0.00032 19.9 0.2 2.7 2 1 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|261403423|ref|YP_003247647.1| - 2.8e-08 33.4 4.1 7.3e-07 28.7 4.1 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|261403423|ref|YP_003247647.1| - 1.2e-06 28.1 0.3 8.3e-05 22.0 0.1 2.6 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 gi|261403423|ref|YP_003247647.1| - 2.3e-06 28.0 2.8 0.0036 17.7 0.0 2.9 3 1 0 3 3 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|261403423|ref|YP_003247647.1| - 2.2e-05 23.5 0.3 0.00038 19.4 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase DAO PF01266.24 gi|261403423|ref|YP_003247647.1| - 3.6e-05 23.5 4.1 0.00022 20.9 0.5 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|261403423|ref|YP_003247647.1| - 5.3e-05 23.2 0.0 0.17 11.8 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.7 gi|261403423|ref|YP_003247647.1| - 0.00011 21.7 0.0 0.0029 17.0 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|261403423|ref|YP_003247647.1| - 0.00014 20.7 5.1 0.00041 19.2 0.2 2.7 3 0 0 3 3 3 1 HI0933-like protein ApbA PF02558.16 gi|261403423|ref|YP_003247647.1| - 0.00015 21.4 0.9 0.052 13.2 0.0 2.6 3 0 0 3 3 3 2 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|261403423|ref|YP_003247647.1| - 0.00089 18.7 0.1 0.04 13.3 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|261403423|ref|YP_003247647.1| - 0.0019 17.5 0.2 0.35 10.1 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|261403423|ref|YP_003247647.1| - 0.0055 15.8 2.1 0.021 13.9 0.2 2.6 3 0 0 3 3 3 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|261403423|ref|YP_003247647.1| - 0.0067 16.0 2.8 1.6 8.2 0.0 2.6 3 0 0 3 3 3 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 gi|261403423|ref|YP_003247647.1| - 0.011 15.0 0.1 0.058 12.6 0.0 2.3 3 0 0 3 3 3 0 Thi4 family IlvN PF07991.12 gi|261403423|ref|YP_003247647.1| - 0.037 13.6 0.5 1.9 8.0 0.4 2.9 2 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|261403423|ref|YP_003247647.1| - 0.13 12.5 0.4 17 5.7 0.1 2.6 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|261403423|ref|YP_003247647.1| - 0.15 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding Spore_II_R PF09551.10 gi|261403423|ref|YP_003247647.1| - 1.2 9.6 4.2 1 9.8 0.6 2.3 2 1 1 3 3 3 0 Stage II sporulation protein R (spore_II_R) tRNA-synt_1b PF00579.25 gi|261403424|ref|YP_003247648.1| - 6.5e-59 199.6 0.0 7.8e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) TYW3 PF02676.14 gi|261403425|ref|YP_003247649.1| - 7e-41 139.9 0.0 8e-41 139.7 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 DUF1931 PF09123.11 gi|261403426|ref|YP_003247650.1| - 6.9e-43 146.1 5.5 7.8e-43 145.9 5.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|261403426|ref|YP_003247650.1| - 0.0081 16.4 5.9 0.01 16.1 1.8 2.5 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone GrpE PF01025.19 gi|261403426|ref|YP_003247650.1| - 0.023 14.3 1.4 0.023 14.3 1.4 1.9 2 0 0 2 2 2 0 GrpE SAM_Exu PF18609.1 gi|261403426|ref|YP_003247650.1| - 0.1 12.7 1.2 2.7 8.1 0.1 2.5 2 1 0 2 2 2 0 Exuperantia SAM-like domain DUF1810 PF08837.11 gi|261403426|ref|YP_003247650.1| - 0.13 12.1 0.1 0.2 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1810) tRNA-synt_2 PF00152.20 gi|261403426|ref|YP_003247650.1| - 0.13 11.3 0.3 0.14 11.2 0.3 1.2 1 0 0 1 1 1 0 tRNA synthetases class II (D, K and N) DNTTIP1_dimer PF18192.1 gi|261403426|ref|YP_003247650.1| - 0.31 11.4 5.2 0.48 10.8 0.3 2.9 3 0 0 3 3 3 0 DNTTIP1 dimerisation domain TruD PF01142.18 gi|261403427|ref|YP_003247651.1| - 4e-107 358.6 0.2 1.9e-87 293.8 0.0 2.1 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) zf-C2H2 PF00096.26 gi|261403429|ref|YP_003247653.1| - 5.3e-05 23.5 2.1 8.3e-05 22.8 2.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|261403429|ref|YP_003247653.1| - 0.00074 20.1 1.4 0.00074 20.1 1.4 1.4 2 0 0 2 2 1 1 C2H2-type zinc finger DUF629 PF04780.12 gi|261403429|ref|YP_003247653.1| - 0.0068 15.0 0.1 0.0072 14.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) zf-Di19 PF05605.12 gi|261403429|ref|YP_003247653.1| - 0.021 15.1 0.4 0.026 14.8 0.4 1.1 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.6 gi|261403429|ref|YP_003247653.1| - 0.031 14.2 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF1610 PF07754.11 gi|261403429|ref|YP_003247653.1| - 0.034 14.1 0.3 0.056 13.4 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) FOXP-CC PF16159.5 gi|261403429|ref|YP_003247653.1| - 0.059 14.0 0.1 0.075 13.7 0.1 1.1 1 0 0 1 1 1 0 FOXP coiled-coil domain zf-Mss51 PF13824.6 gi|261403429|ref|YP_003247653.1| - 0.081 13.0 0.2 0.095 12.8 0.2 1.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-CSL PF05207.13 gi|261403429|ref|YP_003247653.1| - 0.086 12.6 0.0 0.086 12.6 0.0 1.1 1 0 0 1 1 1 0 CSL zinc finger CpXC PF14353.6 gi|261403429|ref|YP_003247653.1| - 0.1 12.6 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 CpXC protein zf-C2H2_6 PF13912.6 gi|261403429|ref|YP_003247653.1| - 0.21 11.6 2.6 0.29 11.2 2.6 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger ATP-grasp_5 PF13549.6 gi|261403430|ref|YP_003247654.1| - 5.8e-52 176.3 0.0 1e-51 175.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|261403430|ref|YP_003247654.1| - 2e-51 173.4 0.1 9.5e-51 171.2 0.0 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|261403430|ref|YP_003247654.1| - 2.2e-29 102.3 0.1 3.8e-28 98.3 0.1 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|261403430|ref|YP_003247654.1| - 1.4e-18 67.4 0.2 7.2e-18 65.1 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|261403430|ref|YP_003247654.1| - 0.00049 19.7 0.2 0.001 18.6 0.2 1.6 1 0 0 1 1 1 1 ATP-grasp domain NAD_Gly3P_dh_N PF01210.23 gi|261403430|ref|YP_003247654.1| - 0.051 13.6 0.1 0.16 12.0 0.1 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YIEGIA PF14045.6 gi|261403430|ref|YP_003247654.1| - 0.15 10.9 0.8 1.3 7.8 0.1 2.6 3 0 0 3 3 3 0 YIEGIA protein TSNAXIP1_N PF15739.5 gi|261403430|ref|YP_003247654.1| - 0.48 10.8 5.5 3.7 8.0 5.1 2.6 2 1 0 2 2 2 0 Translin-associated factor X-interacting N-terminus Pyr_redox_2 PF07992.14 gi|261403431|ref|YP_003247655.1| - 1.3e-63 215.0 3.3 1.6e-63 214.7 3.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|261403431|ref|YP_003247655.1| - 5.8e-26 90.9 5.6 1e-19 70.8 0.1 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|261403431|ref|YP_003247655.1| - 2.7e-17 63.0 8.5 4.8e-07 29.3 0.0 3.8 2 2 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|261403431|ref|YP_003247655.1| - 9e-14 51.7 0.7 7.3e-13 48.8 0.0 2.7 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|261403431|ref|YP_003247655.1| - 2e-11 44.1 5.3 0.012 15.3 0.6 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|261403431|ref|YP_003247655.1| - 3.5e-10 39.9 0.9 0.00042 20.5 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|261403431|ref|YP_003247655.1| - 9.1e-10 37.8 2.9 0.022 13.5 0.1 4.4 5 0 0 5 5 5 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|261403431|ref|YP_003247655.1| - 1.5e-09 37.5 6.7 0.00085 18.5 0.1 4.4 3 2 1 5 5 5 2 FAD binding domain Thi4 PF01946.17 gi|261403431|ref|YP_003247655.1| - 4.4e-07 29.4 2.8 0.003 16.8 0.0 3.5 4 0 0 4 4 4 2 Thi4 family GIDA PF01134.22 gi|261403431|ref|YP_003247655.1| - 1.2e-06 27.9 3.2 1.2 8.1 0.0 4.2 4 0 0 4 4 4 3 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|261403431|ref|YP_003247655.1| - 3e-06 26.6 3.1 0.1 11.6 0.0 3.2 2 1 1 3 3 3 2 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|261403431|ref|YP_003247655.1| - 8e-06 26.2 5.1 0.046 14.2 0.2 3.2 3 0 0 3 3 3 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|261403431|ref|YP_003247655.1| - 4.6e-05 22.8 0.2 0.082 12.1 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain TrkA_N PF02254.18 gi|261403431|ref|YP_003247655.1| - 0.00012 22.3 1.6 0.58 10.4 0.1 3.2 2 1 0 2 2 2 2 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|261403431|ref|YP_003247655.1| - 0.00015 21.1 0.4 0.29 10.4 0.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|261403431|ref|YP_003247655.1| - 0.00053 19.2 0.0 0.071 12.2 0.0 2.9 2 1 2 4 4 4 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|261403431|ref|YP_003247655.1| - 0.00083 19.4 1.8 2.7 8.0 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|261403431|ref|YP_003247655.1| - 0.00089 19.2 4.9 0.0017 18.3 0.1 2.9 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|261403431|ref|YP_003247655.1| - 0.0035 16.7 0.1 0.62 9.3 0.0 2.7 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.19 gi|261403431|ref|YP_003247655.1| - 0.006 16.0 1.6 2.2 7.6 0.1 3.1 2 1 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|261403431|ref|YP_003247655.1| - 0.007 16.0 0.4 1.9 8.1 0.5 2.6 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|261403431|ref|YP_003247655.1| - 0.019 15.8 0.1 3.2 8.6 0.0 2.8 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Trp_halogenase PF04820.14 gi|261403431|ref|YP_003247655.1| - 0.02 13.7 4.1 0.022 13.6 0.1 2.4 3 0 0 3 3 3 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 gi|261403431|ref|YP_003247655.1| - 0.021 14.4 3.3 1.3 8.5 0.1 2.8 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Response_reg PF00072.24 gi|261403431|ref|YP_003247655.1| - 0.03 14.5 0.1 1.7 8.8 0.0 3.1 3 0 0 3 3 3 0 Response regulator receiver domain LpxI_N PF17930.1 gi|261403431|ref|YP_003247655.1| - 0.044 13.7 0.1 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 LpxI N-terminal domain Sigma70_r1_1 PF03979.14 gi|261403431|ref|YP_003247655.1| - 0.055 13.5 1.0 0.3 11.2 0.1 2.4 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 IlvN PF07991.12 gi|261403431|ref|YP_003247655.1| - 0.14 11.7 1.4 5.6 6.5 0.0 2.6 3 0 0 3 3 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_oxidored PF12831.7 gi|261403431|ref|YP_003247655.1| - 0.27 10.5 9.0 0.83 8.9 0.0 3.6 2 2 1 4 4 4 0 FAD dependent oxidoreductase Shikimate_DH PF01488.20 gi|261403431|ref|YP_003247655.1| - 0.91 9.6 3.2 15 5.7 0.8 3.3 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase PTS_IIB PF02302.17 gi|261403431|ref|YP_003247655.1| - 1.1 10.0 6.3 0.51 11.1 0.7 3.0 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit CbiM PF01891.16 gi|261403432|ref|YP_003247656.1| - 1.9e-59 201.0 9.2 2.1e-59 200.8 9.2 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF4199 PF13858.6 gi|261403432|ref|YP_003247656.1| - 3.4 8.1 16.0 12 6.2 13.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) PDGLE PF13190.6 gi|261403433|ref|YP_003247657.1| - 4.2e-07 29.8 0.0 5.5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 PDGLE domain DUF3262 PF11660.8 gi|261403433|ref|YP_003247657.1| - 0.066 13.6 1.6 0.091 13.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF3309 PF11752.8 gi|261403433|ref|YP_003247657.1| - 0.099 12.7 7.1 1 9.4 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) CbiQ PF02361.16 gi|261403434|ref|YP_003247658.1| - 9.2e-59 198.7 8.5 1.6e-58 197.9 8.5 1.3 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|261403435|ref|YP_003247659.1| - 1.2e-31 110.0 0.0 1.7e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|261403435|ref|YP_003247659.1| - 2.1e-14 54.0 0.6 4.7e-07 29.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|261403435|ref|YP_003247659.1| - 1.9e-10 40.6 0.0 3.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|261403435|ref|YP_003247659.1| - 1.4e-05 25.0 0.4 0.0044 16.8 1.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|261403435|ref|YP_003247659.1| - 3.8e-05 24.3 0.7 7.5e-05 23.3 0.7 1.5 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|261403435|ref|YP_003247659.1| - 8.9e-05 21.3 1.2 0.15 10.7 0.1 2.2 1 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|261403435|ref|YP_003247659.1| - 0.0014 18.6 0.1 0.0082 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|261403435|ref|YP_003247659.1| - 0.0016 18.1 0.0 0.0037 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|261403435|ref|YP_003247659.1| - 0.01 15.7 0.1 0.029 14.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|261403435|ref|YP_003247659.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|261403435|ref|YP_003247659.1| - 0.027 14.2 0.1 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|261403435|ref|YP_003247659.1| - 0.038 14.2 0.1 0.74 10.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.7 gi|261403435|ref|YP_003247659.1| - 0.041 12.8 0.2 0.099 11.5 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain Rad17 PF03215.15 gi|261403435|ref|YP_003247659.1| - 0.044 13.7 0.0 0.098 12.6 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|261403435|ref|YP_003247659.1| - 0.06 13.2 0.4 0.14 12.0 0.3 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|261403435|ref|YP_003247659.1| - 0.072 13.4 0.2 0.28 11.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|261403435|ref|YP_003247659.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|261403435|ref|YP_003247659.1| - 0.21 12.0 0.0 0.51 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|261403435|ref|YP_003247659.1| - 0.22 11.8 0.1 0.34 11.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|261403436|ref|YP_003247660.1| - 3.5e-49 167.3 0.3 4.3e-49 167.1 0.3 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|261403436|ref|YP_003247660.1| - 6e-06 26.3 0.3 9.5e-06 25.7 0.3 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|261403436|ref|YP_003247660.1| - 0.0023 17.3 0.3 0.048 12.9 0.1 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain PseudoU_synth_1 PF01416.20 gi|261403437|ref|YP_003247661.1| - 1.4e-22 80.2 0.0 1.5e-20 73.7 0.0 2.1 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF2334 PF10096.9 gi|261403438|ref|YP_003247662.1| - 1.8e-33 116.0 3.0 2.5e-33 115.5 3.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.21 gi|261403438|ref|YP_003247662.1| - 4.3e-05 23.4 0.1 0.00014 21.7 0.1 1.9 1 1 0 1 1 1 1 Polysaccharide deacetylase DUF1647 PF07801.11 gi|261403438|ref|YP_003247662.1| - 0.093 12.5 5.4 0.038 13.7 1.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1647) AIRC PF00731.20 gi|261403439|ref|YP_003247663.1| - 8.6e-57 190.9 0.6 9.7e-57 190.7 0.6 1.0 1 0 0 1 1 1 1 AIR carboxylase cwf21 PF08312.12 gi|261403439|ref|YP_003247663.1| - 0.052 13.7 2.0 0.11 12.7 2.0 1.5 1 0 0 1 1 1 0 cwf21 domain ATP-synt_D PF01813.17 gi|261403440|ref|YP_003247664.1| - 7.8e-63 211.9 15.0 8.8e-63 211.7 15.0 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Exonuc_VII_S PF02609.16 gi|261403440|ref|YP_003247664.1| - 0.31 11.1 13.0 0.26 11.4 0.4 4.0 3 1 1 4 4 4 0 Exonuclease VII small subunit CorA PF01544.18 gi|261403440|ref|YP_003247664.1| - 0.57 9.5 6.7 2.2 7.5 2.0 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF848 PF05852.11 gi|261403440|ref|YP_003247664.1| - 8.1 6.5 9.9 2.5 8.2 1.3 2.2 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF22 PF01629.16 gi|261403441|ref|YP_003247665.1| - 5.6e-18 64.6 0.9 7.1e-18 64.2 0.9 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF22 ParE-like_toxin PF15781.5 gi|261403441|ref|YP_003247665.1| - 0.042 13.8 0.3 8.1 6.5 0.1 2.2 2 0 0 2 2 2 0 ParE-like toxin of type II bacterial toxin-antitoxin system Transglut_core PF01841.19 gi|261403442|ref|YP_003247666.1| - 4.1e-30 104.5 0.0 8.1e-30 103.6 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Big_3_5 PF16640.5 gi|261403442|ref|YP_003247666.1| - 2.2e-10 40.6 0.3 0.00034 20.7 0.0 2.7 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) CarboxypepD_reg PF13620.6 gi|261403442|ref|YP_003247666.1| - 3.1e-06 27.4 0.2 0.0026 18.0 0.0 3.0 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_7 PF17957.1 gi|261403442|ref|YP_003247666.1| - 0.0045 17.7 3.0 0.16 12.8 0.2 3.8 3 0 0 3 3 3 1 Bacterial Ig domain CarbopepD_reg_2 PF13715.6 gi|261403442|ref|YP_003247666.1| - 0.0083 16.1 6.4 0.019 15.0 2.9 3.1 2 0 0 2 2 2 1 CarboxypepD_reg-like domain CooC_C PF15976.5 gi|261403442|ref|YP_003247666.1| - 0.017 15.2 0.5 0.076 13.1 0.1 2.2 2 0 0 2 2 2 0 CS1-pili formation C-terminal MG2 PF01835.19 gi|261403442|ref|YP_003247666.1| - 0.055 13.9 0.0 7.4 7.1 0.0 2.8 2 0 0 2 2 2 0 MG2 domain T3SS_needle_reg PF09025.10 gi|261403443|ref|YP_003247667.1| - 0.014 15.4 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator Saf_2TM PF18303.1 gi|261403443|ref|YP_003247667.1| - 4 7.0 7.9 2.5 7.7 0.7 2.7 1 1 0 2 2 2 0 SAVED-fused 2TM effector domain AAA_3 PF07726.11 gi|261403444|ref|YP_003247668.1| - 5.8e-63 210.6 0.0 9.7e-63 209.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|261403444|ref|YP_003247668.1| - 6.8e-16 57.9 0.0 1.2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|261403444|ref|YP_003247668.1| - 1.2e-12 48.0 0.0 2.3e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|261403444|ref|YP_003247668.1| - 6.4e-06 26.6 0.0 1.2e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|261403444|ref|YP_003247668.1| - 2.5e-05 24.0 0.0 0.00014 21.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|261403444|ref|YP_003247668.1| - 4e-05 22.8 0.3 0.00022 20.4 0.1 2.3 2 1 0 2 2 2 1 MCM P-loop domain RuvB_N PF05496.12 gi|261403444|ref|YP_003247668.1| - 4.4e-05 23.3 0.0 0.00051 19.8 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|261403444|ref|YP_003247668.1| - 0.0006 19.2 0.1 0.43 9.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|261403444|ref|YP_003247668.1| - 0.0073 16.4 0.4 0.088 12.9 0.0 2.6 3 1 0 3 3 3 1 AAA domain (Cdc48 subfamily) TsaE PF02367.17 gi|261403444|ref|YP_003247668.1| - 0.16 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF58 PF01882.18 gi|261403445|ref|YP_003247669.1| - 1.5e-20 73.2 0.0 2.4e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF58 bMG10 PF17973.1 gi|261403445|ref|YP_003247669.1| - 0.0016 18.6 0.2 1 9.5 0.0 2.4 1 1 1 2 2 2 2 Bacterial Alpha-2-macroglobulin MG10 domain BatD PF13584.6 gi|261403445|ref|YP_003247669.1| - 0.059 12.2 0.0 0.095 11.5 0.0 1.2 1 0 0 1 1 1 0 Oxygen tolerance DNA_methylase PF00145.17 gi|261403447|ref|YP_003247671.1| - 5.5e-46 157.5 0.3 2.1e-22 79.9 0.1 3.1 2 1 1 3 3 3 3 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|261403447|ref|YP_003247671.1| - 0.00069 19.2 0.0 0.0013 18.3 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ribosomal_L24e PF01246.20 gi|261403448|ref|YP_003247672.1| - 1.3e-26 92.6 2.6 1.3e-26 92.6 2.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|261403448|ref|YP_003247672.1| - 1.4e-06 28.1 3.9 2e-06 27.6 3.9 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|261403448|ref|YP_003247672.1| - 0.00039 20.5 1.0 0.00059 19.9 1.0 1.2 1 0 0 1 1 1 1 YHS domain NosL PF05573.12 gi|261403448|ref|YP_003247672.1| - 0.019 15.3 0.1 0.021 15.2 0.1 1.1 1 0 0 1 1 1 0 NosL DUF2116 PF09889.9 gi|261403448|ref|YP_003247672.1| - 0.034 14.1 3.6 0.66 10.0 3.6 2.1 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) ICAM_N PF03921.14 gi|261403448|ref|YP_003247672.1| - 0.052 13.2 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 Intercellular adhesion molecule (ICAM), N-terminal domain Arc_trans_TRASH PF08394.10 gi|261403448|ref|YP_003247672.1| - 0.06 13.7 2.5 0.11 12.8 2.5 1.5 1 1 0 1 1 1 0 Archaeal TRASH domain SOBP PF15279.6 gi|261403448|ref|YP_003247672.1| - 0.13 12.8 0.2 0.18 12.4 0.2 1.1 1 0 0 1 1 1 0 Sine oculis-binding protein Ribosomal_S28e PF01200.18 gi|261403449|ref|YP_003247673.1| - 2.9e-30 104.1 4.0 3.2e-30 103.9 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|261403450|ref|YP_003247674.1| - 4.9e-31 106.3 2.5 6.1e-31 106.0 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|261403450|ref|YP_003247674.1| - 1.4e-05 24.9 0.1 2.1e-05 24.3 0.1 1.4 1 1 0 1 1 1 1 PELOTA RNA binding domain HisG PF01634.18 gi|261403451|ref|YP_003247675.1| - 1.4e-53 181.1 0.5 2.3e-53 180.4 0.5 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|261403451|ref|YP_003247675.1| - 3e-27 94.6 0.2 8.6e-27 93.1 0.2 1.8 1 0 0 1 1 1 1 HisG, C-terminal domain Sec2p PF06428.11 gi|261403451|ref|YP_003247675.1| - 0.5 10.4 4.7 5.3 7.1 0.1 2.3 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p UPF0058 PF01893.16 gi|261403452|ref|YP_003247676.1| - 2e-32 111.3 2.2 2e-32 111.3 2.2 1.4 1 1 0 1 1 1 1 Uncharacterised protein family UPF0058 Linker_histone PF00538.19 gi|261403452|ref|YP_003247676.1| - 0.92 9.9 4.0 2.9 8.3 0.2 2.5 2 1 0 2 2 2 0 linker histone H1 and H5 family Toprim_4 PF13662.6 gi|261403453|ref|YP_003247677.1| - 1.3e-12 48.0 1.5 4.2e-12 46.4 0.2 2.5 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|261403453|ref|YP_003247677.1| - 5.4e-06 26.7 0.1 6.7e-05 23.2 0.0 2.5 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|261403453|ref|YP_003247677.1| - 9.6e-05 22.6 0.2 9.6e-05 22.6 0.2 2.8 2 2 0 2 2 2 1 Toprim domain Glycos_transf_1 PF00534.20 gi|261403453|ref|YP_003247677.1| - 0.00036 20.1 1.1 0.00076 19.0 1.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 RPN6_C_helix PF18503.1 gi|261403453|ref|YP_003247677.1| - 0.056 13.2 0.1 9.3 6.1 0.0 2.5 2 0 0 2 2 2 0 26S proteasome subunit RPN6 C-terminal helix domain DUF2851 PF11013.8 gi|261403453|ref|YP_003247677.1| - 1.7 7.5 4.8 0.63 9.0 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2851) DUF4987 PF16377.5 gi|261403454|ref|YP_003247678.1| - 0.062 13.5 0.0 0.07 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function Pcc1 PF09341.10 gi|261403454|ref|YP_003247678.1| - 0.15 12.3 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Pcc1 AdoMet_Synthase PF01941.19 gi|261403455|ref|YP_003247679.1| - 3.9e-181 602.1 10.4 4.4e-181 601.9 10.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LZ3wCH PF18517.1 gi|261403455|ref|YP_003247679.1| - 0.00079 19.5 0.3 0.00079 19.5 0.3 2.4 2 0 0 2 2 2 1 Leucine zipper with capping helix domain S-AdoMet_synt_N PF00438.20 gi|261403455|ref|YP_003247679.1| - 0.076 13.7 1.9 0.24 12.1 0.2 2.7 2 1 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain DUF3381 PF11861.8 gi|261403455|ref|YP_003247679.1| - 0.15 11.9 1.5 0.35 10.7 1.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3381) CPSase_L_D2 PF02786.17 gi|261403456|ref|YP_003247680.1| - 2.5e-40 138.2 0.1 3.9e-40 137.6 0.1 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain MGS PF02142.22 gi|261403456|ref|YP_003247680.1| - 3.5e-26 91.2 1.0 3.4e-24 84.8 0.1 3.6 4 0 0 4 4 4 1 MGS-like domain CPSase_L_D3 PF02787.19 gi|261403456|ref|YP_003247680.1| - 2.6e-24 85.9 0.2 8e-24 84.3 0.1 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|261403456|ref|YP_003247680.1| - 5.8e-10 39.0 0.1 1.2e-09 37.9 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|261403456|ref|YP_003247680.1| - 2.2e-09 37.2 0.1 5e-09 36.0 0.1 1.6 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|261403456|ref|YP_003247680.1| - 3e-09 36.7 0.0 1.2e-08 34.8 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|261403456|ref|YP_003247680.1| - 1.9e-07 31.2 0.1 5.2e-07 29.8 0.1 1.8 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|261403456|ref|YP_003247680.1| - 4.9e-06 26.5 0.2 1.7e-05 24.7 0.2 1.9 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|261403456|ref|YP_003247680.1| - 0.0042 16.6 0.0 0.012 15.1 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|261403456|ref|YP_003247680.1| - 0.029 13.9 0.0 0.1 12.1 0.0 1.9 1 0 0 1 1 1 0 ATP-grasp domain DUF86 PF01934.17 gi|261403457|ref|YP_003247681.1| - 9.9e-14 51.2 0.0 1.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.23 gi|261403458|ref|YP_003247682.1| - 9.4e-22 77.1 1.0 1e-21 77.0 1.0 1.0 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|261403458|ref|YP_003247682.1| - 1e-15 57.5 0.7 1.1e-15 57.5 0.7 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|261403458|ref|YP_003247682.1| - 0.014 15.5 0.0 0.015 15.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm DUF294 PF03445.13 gi|261403458|ref|YP_003247682.1| - 0.051 13.4 0.0 0.057 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF2283 PF10049.9 gi|261403459|ref|YP_003247683.1| - 5.2e-18 65.0 5.8 6.8e-18 64.6 5.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) CPSase_L_D2 PF02786.17 gi|261403460|ref|YP_003247684.1| - 8.4e-77 257.4 0.4 1.2e-76 256.9 0.4 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|261403460|ref|YP_003247684.1| - 2.6e-16 60.1 0.4 1.2e-15 57.9 0.1 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Dala_Dala_lig_C PF07478.13 gi|261403460|ref|YP_003247684.1| - 2.4e-08 33.8 0.1 7.9e-08 32.1 0.1 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|261403460|ref|YP_003247684.1| - 5.6e-06 26.1 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|261403460|ref|YP_003247684.1| - 0.00014 21.5 0.1 0.00026 20.6 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|261403460|ref|YP_003247684.1| - 0.00016 21.8 0.4 0.00032 20.8 0.4 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|261403460|ref|YP_003247684.1| - 0.024 14.4 0.1 0.052 13.3 0.1 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF433 PF04255.14 gi|261403460|ref|YP_003247684.1| - 0.026 14.4 0.0 2.4 8.1 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF433) HTH_23 PF13384.6 gi|261403460|ref|YP_003247684.1| - 0.036 13.9 0.0 0.46 10.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain Epimerase PF01370.21 gi|261403460|ref|YP_003247684.1| - 0.061 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ATP-grasp_5 PF13549.6 gi|261403460|ref|YP_003247684.1| - 0.091 12.2 0.1 0.47 9.9 0.1 2.1 1 1 1 2 2 2 0 ATP-grasp domain tRNA-synt_1c PF00749.21 gi|261403461|ref|YP_003247685.1| - 1.5e-85 286.9 0.0 2.7e-85 286.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|261403461|ref|YP_003247685.1| - 3.7e-32 111.6 0.2 6.4e-32 110.8 0.2 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1f PF01921.18 gi|261403461|ref|YP_003247685.1| - 0.0019 17.2 0.2 0.76 8.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) Orn_Arg_deC_N PF02784.16 gi|261403462|ref|YP_003247686.1| - 7.3e-63 212.2 0.1 1e-62 211.7 0.1 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|261403462|ref|YP_003247686.1| - 5.5e-26 90.7 0.0 1.3e-25 89.5 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|261403462|ref|YP_003247686.1| - 0.06 13.0 0.0 0.31 10.7 0.0 2.0 2 1 0 2 2 2 0 Alanine racemase, N-terminal domain 7TMR-DISM_7TM PF07695.11 gi|261403463|ref|YP_003247687.1| - 0.1 12.5 10.7 0.18 11.7 10.7 1.4 1 0 0 1 1 1 0 7TM diverse intracellular signalling Cas6_N PF17952.1 gi|261403463|ref|YP_003247687.1| - 0.32 11.3 3.2 18 5.6 0.3 3.3 3 1 1 4 4 4 0 Cas6 N-terminal domain DUF2070 PF09843.9 gi|261403463|ref|YP_003247687.1| - 1.3 7.2 7.5 1.8 6.8 7.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1270 PF06900.11 gi|261403463|ref|YP_003247687.1| - 8 6.9 9.4 0.77 10.2 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) Methylase_S PF01420.19 gi|261403464|ref|YP_003247688.1| - 0.0047 17.2 0.2 0.0082 16.4 0.2 1.4 1 0 0 1 1 1 1 Type I restriction modification DNA specificity domain Tctex-1 PF03645.13 gi|261403464|ref|YP_003247688.1| - 0.023 14.9 0.3 0.038 14.2 0.3 1.3 1 0 0 1 1 1 0 Tctex-1 family ECF_trnsprt PF12822.7 gi|261403464|ref|YP_003247688.1| - 0.024 14.8 29.9 1 9.5 30.0 2.2 1 1 0 1 1 1 0 ECF transporter, substrate-specific component Mac PF12464.8 gi|261403464|ref|YP_003247688.1| - 0.15 12.4 0.1 0.33 11.2 0.1 1.6 1 0 0 1 1 1 0 Maltose acetyltransferase AAA_31 PF13614.6 gi|261403465|ref|YP_003247689.1| - 3.6e-17 62.8 2.9 3.6e-17 62.8 2.9 2.1 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|261403465|ref|YP_003247689.1| - 1.5e-15 57.3 0.0 5.7e-15 55.5 0.0 1.9 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|261403465|ref|YP_003247689.1| - 5.1e-10 39.2 2.5 1.5e-09 37.7 0.6 2.5 2 1 1 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|261403465|ref|YP_003247689.1| - 1.1e-09 38.2 3.8 9.9e-06 25.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|261403465|ref|YP_003247689.1| - 1.2e-06 28.2 0.0 4e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|261403465|ref|YP_003247689.1| - 5.9e-06 25.7 0.0 8.8e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|261403465|ref|YP_003247689.1| - 8.6e-06 25.1 3.9 2e-05 24.0 0.2 2.6 3 0 0 3 3 3 1 Anion-transporting ATPase VirC1 PF07015.11 gi|261403465|ref|YP_003247689.1| - 0.00024 20.5 0.0 0.00042 19.7 0.0 1.5 1 0 0 1 1 1 1 VirC1 protein ResIII PF04851.15 gi|261403465|ref|YP_003247689.1| - 0.011 15.8 1.1 0.14 12.1 0.1 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|261403465|ref|YP_003247689.1| - 0.042 13.4 0.0 0.087 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|261403465|ref|YP_003247689.1| - 0.045 13.2 0.7 0.093 12.2 0.7 1.5 1 0 0 1 1 1 0 PhoH-like protein SRP54 PF00448.22 gi|261403465|ref|YP_003247689.1| - 0.053 13.2 0.2 0.17 11.5 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CPSase_L_D3 PF02787.19 gi|261403465|ref|YP_003247689.1| - 0.053 13.9 0.2 0.13 12.6 0.2 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APS_kinase PF01583.20 gi|261403465|ref|YP_003247689.1| - 0.068 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase HxlR PF01638.17 gi|261403466|ref|YP_003247690.1| - 4.2e-11 42.6 0.3 1e-10 41.3 0.3 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|261403466|ref|YP_003247690.1| - 2.1e-08 34.0 2.0 3.1e-08 33.5 2.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|261403466|ref|YP_003247690.1| - 1.8e-05 24.6 0.4 2.9e-05 23.9 0.4 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF4364 PF14277.6 gi|261403466|ref|YP_003247690.1| - 0.0024 17.6 0.3 0.0029 17.3 0.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) GntR PF00392.21 gi|261403466|ref|YP_003247690.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HemN_C PF06969.16 gi|261403466|ref|YP_003247690.1| - 0.044 13.8 0.0 0.069 13.2 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain HTH_24 PF13412.6 gi|261403466|ref|YP_003247690.1| - 0.049 13.2 0.0 0.099 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2226 PF09987.9 gi|261403467|ref|YP_003247691.1| - 7.9e-15 55.0 26.6 9.6e-15 54.7 26.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) P-II PF00543.22 gi|261403467|ref|YP_003247691.1| - 0.015 15.9 2.0 0.015 15.9 2.0 2.1 2 1 0 2 2 2 0 Nitrogen regulatory protein P-II DHquinase_I PF01487.15 gi|261403468|ref|YP_003247692.1| - 1.8e-61 208.3 0.0 2.1e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase dUTPase_2 PF08761.11 gi|261403468|ref|YP_003247692.1| - 0.042 14.0 0.4 0.08 13.1 0.4 1.5 1 1 0 1 1 1 0 dUTPase ARL2_Bind_BART PF11527.8 gi|261403468|ref|YP_003247692.1| - 0.052 13.7 1.4 2.7 8.1 0.4 2.2 2 0 0 2 2 2 0 The ARF-like 2 binding protein BART CTP_transf_like PF01467.26 gi|261403468|ref|YP_003247692.1| - 0.16 12.2 0.4 0.31 11.2 0.1 1.6 2 0 0 2 2 2 0 Cytidylyltransferase-like TatD_DNase PF01026.21 gi|261403469|ref|YP_003247693.1| - 1.9e-27 96.2 0.1 2.8e-27 95.7 0.1 1.2 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|261403469|ref|YP_003247693.1| - 0.12 11.7 0.2 0.21 10.9 0.2 1.6 1 1 0 1 1 1 0 Amidohydrolase family C5-epim_C PF06662.13 gi|261403470|ref|YP_003247694.1| - 5.3e-51 172.8 9.0 7.7e-51 172.3 9.0 1.2 1 0 0 1 1 1 1 D-glucuronyl C5-epimerase C-terminus Sel1 PF08238.12 gi|261403470|ref|YP_003247694.1| - 0.053 14.2 0.5 9.1 7.1 0.0 3.0 2 0 0 2 2 2 0 Sel1 repeat FeS_assembly_P PF01883.19 gi|261403471|ref|YP_003247695.1| - 2e-24 85.6 0.7 2.5e-24 85.2 0.7 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein MCH PF02289.16 gi|261403472|ref|YP_003247696.1| - 1.6e-134 448.1 0.1 1.7e-134 448.0 0.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) MAF_flag10 PF01973.18 gi|261403473|ref|YP_003247697.1| - 5.5e-37 127.1 1.5 7.6e-37 126.6 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 Alba PF01918.21 gi|261403473|ref|YP_003247697.1| - 0.1 12.4 1.6 2.3 8.1 0.0 2.7 3 0 0 3 3 3 0 Alba TrkA_N PF02254.18 gi|261403474|ref|YP_003247698.1| - 1.6e-24 86.4 0.7 5.8e-24 84.6 0.3 2.2 2 0 0 2 2 2 1 TrkA-N domain DHHA1 PF02272.19 gi|261403474|ref|YP_003247698.1| - 5.1e-17 62.6 0.3 5.1e-17 62.6 0.3 2.8 3 0 0 3 3 3 1 DHHA1 domain DHH PF01368.20 gi|261403474|ref|YP_003247698.1| - 2.1e-14 53.6 0.1 4.3e-14 52.6 0.1 1.6 1 0 0 1 1 1 1 DHH family NAD_binding_7 PF13241.6 gi|261403474|ref|YP_003247698.1| - 5.4e-07 30.0 0.7 2e-06 28.1 0.2 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|261403474|ref|YP_003247698.1| - 0.00062 19.7 0.1 0.0013 18.7 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|261403474|ref|YP_003247698.1| - 0.00082 19.6 0.3 0.0021 18.3 0.3 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|261403474|ref|YP_003247698.1| - 0.015 14.9 0.3 0.027 14.0 0.3 1.4 1 0 0 1 1 1 0 NmrA-like family PglD_N PF17836.1 gi|261403474|ref|YP_003247698.1| - 0.69 10.6 5.4 0.31 11.7 0.5 2.8 3 0 0 3 3 3 0 PglD N-terminal domain MtrD PF04207.12 gi|261403475|ref|YP_003247699.1| - 0.0087 15.8 0.2 0.014 15.1 0.2 1.2 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D Toprim_4 PF13662.6 gi|261403477|ref|YP_003247701.1| - 1.1e-08 35.4 0.2 1.8e-08 34.8 0.2 1.3 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.22 gi|261403477|ref|YP_003247701.1| - 4.2e-07 30.1 0.6 4.6e-06 26.8 0.6 2.2 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|261403477|ref|YP_003247701.1| - 1.2e-05 25.6 0.0 1.8e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Toprim-like Toprim_3 PF13362.6 gi|261403477|ref|YP_003247701.1| - 0.00025 21.3 0.0 0.00035 20.9 0.0 1.2 1 0 0 1 1 1 1 Toprim domain ANF_receptor PF01094.28 gi|261403477|ref|YP_003247701.1| - 0.19 10.8 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region FbpA PF05833.11 gi|261403479|ref|YP_003247703.1| - 1.6e-101 340.3 23.9 2.1e-101 339.9 23.9 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|261403479|ref|YP_003247703.1| - 1.1e-24 87.1 0.0 2.7e-24 85.9 0.0 1.6 1 0 0 1 1 1 1 NFACT protein RNA binding domain Ribosomal_S13 PF00416.22 gi|261403479|ref|YP_003247703.1| - 5e-05 23.7 0.0 5e-05 23.7 0.0 3.7 2 1 2 4 4 4 1 Ribosomal protein S13/S18 H2TH PF06831.14 gi|261403479|ref|YP_003247703.1| - 0.0056 16.6 0.5 0.16 12.0 0.0 2.7 2 0 0 2 2 2 1 Formamidopyrimidine-DNA glycosylase H2TH domain MCU PF04678.13 gi|261403479|ref|YP_003247703.1| - 0.22 11.6 6.6 2.5 8.2 1.1 2.4 2 0 0 2 2 2 0 Mitochondrial calcium uniporter UPF0449 PF15136.6 gi|261403479|ref|YP_003247703.1| - 0.65 10.5 6.7 4.7 7.8 0.4 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 Prenyltransf PF01255.19 gi|261403479|ref|YP_003247703.1| - 0.96 8.9 4.6 1.4 8.4 0.0 2.6 2 1 0 2 2 2 0 Putative undecaprenyl diphosphate synthase TMPIT PF07851.13 gi|261403479|ref|YP_003247703.1| - 7.1 5.8 14.0 4.2 6.5 2.9 2.4 2 0 0 2 2 2 0 TMPIT-like protein FAA_hydrolase PF01557.18 gi|261403480|ref|YP_003247704.1| - 4.9e-70 235.6 0.0 5.5e-70 235.4 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glycos_transf_4 PF00953.21 gi|261403481|ref|YP_003247705.1| - 8.4e-27 94.1 12.3 8.4e-27 94.1 12.3 2.0 3 0 0 3 3 3 1 Glycosyl transferase family 4 Intein_splicing PF14890.6 gi|261403482|ref|YP_003247706.1| - 5.1e-19 68.6 0.0 3.4e-18 65.9 0.0 2.8 1 1 0 1 1 1 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|261403482|ref|YP_003247706.1| - 5.7e-16 58.6 1.4 2.6e-15 56.5 0.8 2.6 2 0 0 2 2 1 1 LAGLIDADG-like domain PIN PF01850.21 gi|261403482|ref|YP_003247706.1| - 9.5e-09 35.8 0.6 2.8e-08 34.3 0.6 1.9 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|261403482|ref|YP_003247706.1| - 1.8e-07 30.9 0.3 6.5e-07 29.1 0.3 2.0 1 0 0 1 1 1 1 KH domain T2SSE PF00437.20 gi|261403482|ref|YP_003247706.1| - 3.1e-06 26.5 0.0 0.0073 15.4 0.0 2.6 2 0 0 2 2 2 2 Type II/IV secretion system protein LAGLIDADG_WhiA PF14527.6 gi|261403482|ref|YP_003247706.1| - 1.6e-05 24.9 0.3 0.00016 21.7 0.1 3.0 2 0 0 2 2 2 1 WhiA LAGLIDADG-like domain Hint PF01079.20 gi|261403482|ref|YP_003247706.1| - 0.00011 21.7 0.0 0.00049 19.7 0.0 2.1 3 0 0 3 3 3 1 Hint module Hom_end_hint PF05203.16 gi|261403482|ref|YP_003247706.1| - 0.00043 20.3 0.3 0.0021 18.0 0.0 2.4 3 0 0 3 3 3 1 Hom_end-associated Hint PIN_4 PF13638.6 gi|261403482|ref|YP_003247706.1| - 0.0011 19.3 0.0 0.0011 19.3 0.0 2.8 3 0 0 3 3 3 1 PIN domain KH_2 PF07650.17 gi|261403482|ref|YP_003247706.1| - 0.0019 18.0 1.6 0.0019 18.0 1.6 4.6 6 0 0 6 6 6 1 KH domain KH_4 PF13083.6 gi|261403482|ref|YP_003247706.1| - 0.0025 17.7 0.6 0.022 14.7 0.6 2.8 1 0 0 1 1 1 1 KH domain Hom_end PF05204.14 gi|261403482|ref|YP_003247706.1| - 0.0098 16.1 0.1 6.9 6.9 0.0 2.6 2 0 0 2 2 2 1 Homing endonuclease KH_5 PF13184.6 gi|261403482|ref|YP_003247706.1| - 0.015 15.4 1.2 0.19 11.8 0.3 3.3 2 0 0 2 2 2 0 NusA-like KH domain FAA_hydro_N_2 PF18288.1 gi|261403482|ref|YP_003247706.1| - 0.029 14.8 0.2 6.2 7.3 0.0 2.9 3 0 0 3 3 2 0 Fumarylacetoacetase N-terminal domain 2 RelA_SpoT PF04607.17 gi|261403482|ref|YP_003247706.1| - 0.14 12.5 2.4 19 5.6 0.1 3.4 3 0 0 3 3 3 0 Region found in RelA / SpoT proteins Vac_Fusion PF02346.16 gi|261403482|ref|YP_003247706.1| - 0.23 11.1 5.1 0.32 10.6 0.1 3.6 4 0 0 4 4 3 0 Chordopoxvirus multifunctional envelope protein A27 PIN_9 PF18477.1 gi|261403482|ref|YP_003247706.1| - 0.43 10.9 4.2 8.5 6.7 0.5 3.7 3 1 0 3 3 3 0 PIN like domain MutS_II PF05188.17 gi|261403482|ref|YP_003247706.1| - 0.92 9.8 3.3 0.73 10.1 0.6 2.2 2 0 0 2 2 1 0 MutS domain II CDP-OH_P_transf PF01066.21 gi|261403483|ref|YP_003247707.1| - 1.9e-13 50.9 1.4 1.9e-13 50.9 1.4 3.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Arginase PF00491.21 gi|261403483|ref|YP_003247707.1| - 0.18 11.2 0.1 0.25 10.8 0.1 1.1 1 0 0 1 1 1 0 Arginase family AP_endonuc_2 PF01261.24 gi|261403484|ref|YP_003247708.1| - 3.5e-18 65.8 0.0 4.3e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|261403484|ref|YP_003247708.1| - 9.9e-05 21.7 0.1 0.00015 21.1 0.1 1.3 1 0 0 1 1 1 1 UV-endonuclease UvdE UbiD PF01977.16 gi|261403485|ref|YP_003247709.1| - 4.4e-87 292.6 0.0 5.4e-87 292.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UPF0058 PF01893.16 gi|261403486|ref|YP_003247710.1| - 1.1e-28 99.3 3.7 1.6e-28 98.8 3.7 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 BAF PF02961.14 gi|261403486|ref|YP_003247710.1| - 0.032 14.6 0.0 0.068 13.6 0.0 1.5 1 0 0 1 1 1 0 Barrier to autointegration factor GMP_synt_C PF00958.22 gi|261403487|ref|YP_003247711.1| - 1.5e-38 130.8 0.1 5e-38 129.0 0.0 1.9 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|261403487|ref|YP_003247711.1| - 4.8e-13 48.8 0.2 7.6e-08 31.8 0.1 2.2 2 0 0 2 2 2 2 NAD synthase ThiI PF02568.14 gi|261403487|ref|YP_003247711.1| - 6.8e-06 25.8 0.0 1.3e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|261403487|ref|YP_003247711.1| - 9.8e-06 24.6 0.0 0.00035 19.5 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|261403487|ref|YP_003247711.1| - 1.1e-05 25.1 0.1 0.00056 19.5 0.1 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|261403487|ref|YP_003247711.1| - 6.5e-05 23.0 0.0 0.00011 22.3 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Arginosuc_synth PF00764.19 gi|261403487|ref|YP_003247711.1| - 6.8e-05 22.3 0.1 0.00013 21.4 0.1 1.4 1 0 0 1 1 1 1 Arginosuccinate synthase ATP_bind_3 PF01171.20 gi|261403487|ref|YP_003247711.1| - 9.8e-05 22.2 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family AAA_25 PF13481.6 gi|261403487|ref|YP_003247711.1| - 0.057 13.0 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Asn_synthase PF00733.21 gi|261403487|ref|YP_003247711.1| - 0.071 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase Cas_DxTHG PF09455.10 gi|261403487|ref|YP_003247711.1| - 2 7.9 4.9 19 4.7 0.1 2.6 1 1 0 2 2 2 0 CRISPR-associated (Cas) DxTHG family ESSS PF10183.9 gi|261403488|ref|YP_003247712.1| - 0.059 13.6 0.1 0.061 13.5 0.1 1.2 1 0 0 1 1 1 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) LANC_like PF05147.13 gi|261403490|ref|YP_003247714.1| - 0.016 13.8 0.1 0.019 13.6 0.1 1.3 1 1 0 1 1 1 0 Lanthionine synthetase C-like protein OTCace PF00185.24 gi|261403491|ref|YP_003247715.1| - 1.4e-57 194.2 0.0 2.6e-57 193.3 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|261403491|ref|YP_003247715.1| - 7.5e-51 172.0 0.0 1e-50 171.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MTS PF05175.14 gi|261403492|ref|YP_003247716.1| - 1.2e-53 181.1 0.1 1.4e-53 180.9 0.1 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|261403492|ref|YP_003247716.1| - 5.3e-15 55.5 0.1 7.1e-15 55.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|261403492|ref|YP_003247716.1| - 3.3e-14 53.0 0.9 4.1e-14 52.7 0.9 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|261403492|ref|YP_003247716.1| - 1.3e-12 48.3 0.0 1.9e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261403492|ref|YP_003247716.1| - 3.9e-10 39.8 0.8 5.9e-10 39.3 0.8 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|261403492|ref|YP_003247716.1| - 1.4e-09 37.4 0.0 1.8e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Met_10 PF02475.16 gi|261403492|ref|YP_003247716.1| - 7e-09 35.7 0.2 9.1e-09 35.4 0.2 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_11 PF08241.12 gi|261403492|ref|YP_003247716.1| - 9.9e-09 35.7 0.0 2.4e-08 34.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|261403492|ref|YP_003247716.1| - 8.1e-08 32.2 0.2 1.1e-07 31.8 0.2 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Cons_hypoth95 PF03602.15 gi|261403492|ref|YP_003247716.1| - 2e-07 30.8 0.0 2.4e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|261403492|ref|YP_003247716.1| - 4.1e-07 30.7 0.1 5.9e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|261403492|ref|YP_003247716.1| - 4.4e-07 29.5 0.6 1.2e-06 28.1 0.4 1.7 1 1 1 2 2 2 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|261403492|ref|YP_003247716.1| - 5e-07 29.7 0.0 6.5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|261403492|ref|YP_003247716.1| - 2e-06 27.3 1.6 2.6e-06 27.0 1.6 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|261403492|ref|YP_003247716.1| - 4e-06 26.3 0.3 4.9e-06 26.0 0.3 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|261403492|ref|YP_003247716.1| - 1.7e-05 24.4 0.0 2.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase NodS PF05401.11 gi|261403492|ref|YP_003247716.1| - 2.9e-05 23.8 0.0 4.9e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 Nodulation protein S (NodS) GidB PF02527.15 gi|261403492|ref|YP_003247716.1| - 3.2e-05 23.3 0.2 4.1e-05 23.0 0.2 1.1 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G DUF43 PF01861.16 gi|261403492|ref|YP_003247716.1| - 4.2e-05 22.9 0.3 5.9e-05 22.4 0.3 1.2 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain RrnaAD PF00398.20 gi|261403492|ref|YP_003247716.1| - 0.0001 21.5 0.1 0.00012 21.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|261403492|ref|YP_003247716.1| - 0.00011 22.1 0.2 0.00014 21.7 0.2 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltrans_SAM PF10672.9 gi|261403492|ref|YP_003247716.1| - 0.00016 20.9 0.1 0.00019 20.7 0.1 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase N6_Mtase PF02384.16 gi|261403492|ref|YP_003247716.1| - 0.00024 20.5 0.0 0.00035 19.9 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase TRM PF02005.16 gi|261403492|ref|YP_003247716.1| - 0.00028 20.2 0.2 0.00032 20.0 0.2 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase UPF0020 PF01170.18 gi|261403492|ref|YP_003247716.1| - 0.0012 18.5 0.3 0.0022 17.7 0.3 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|261403492|ref|YP_003247716.1| - 0.0016 18.2 0.5 0.039 13.7 0.0 2.1 1 1 0 2 2 2 1 DNA methylase AviRa PF11599.8 gi|261403492|ref|YP_003247716.1| - 0.012 15.1 0.1 0.027 13.9 0.1 1.6 1 1 1 2 2 2 0 RRNA methyltransferase AviRa SPOUT_MTase_2 PF14419.6 gi|261403492|ref|YP_003247716.1| - 0.013 14.9 0.2 0.017 14.5 0.2 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP Methyltransf_4 PF02390.17 gi|261403492|ref|YP_003247716.1| - 0.018 14.5 0.1 0.036 13.5 0.1 1.6 1 1 0 1 1 1 0 Putative methyltransferase MetW PF07021.12 gi|261403492|ref|YP_003247716.1| - 0.026 14.1 0.3 0.036 13.7 0.3 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MethyltransfD12 PF02086.15 gi|261403492|ref|YP_003247716.1| - 0.059 13.0 0.0 0.077 12.7 0.0 1.3 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Borrelia_orfD PF02999.14 gi|261403493|ref|YP_003247717.1| - 0.11 12.9 0.1 0.12 12.7 0.1 1.1 1 0 0 1 1 1 0 Borrelia orf-D family Met_10 PF02475.16 gi|261403494|ref|YP_003247718.1| - 1.5e-73 246.8 0.7 2.3e-73 246.2 0.7 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|261403494|ref|YP_003247718.1| - 4.7e-19 68.0 2.1 4.7e-19 68.0 2.1 3.0 3 0 0 3 3 3 1 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|261403494|ref|YP_003247718.1| - 1.1e-07 31.6 0.1 1.9e-07 30.8 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|261403494|ref|YP_003247718.1| - 1.5e-06 27.8 0.1 2.6e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|261403494|ref|YP_003247718.1| - 5e-06 26.3 0.0 1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|261403494|ref|YP_003247718.1| - 5.8e-06 25.9 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TRM PF02005.16 gi|261403494|ref|YP_003247718.1| - 0.0001 21.6 0.0 0.00011 21.5 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase DNA_methylase PF00145.17 gi|261403494|ref|YP_003247718.1| - 0.00019 20.9 0.2 0.00061 19.2 0.0 1.8 2 0 0 2 2 2 1 C-5 cytosine-specific DNA methylase Methyltransf_18 PF12847.7 gi|261403494|ref|YP_003247718.1| - 0.0016 18.4 0.3 0.0068 16.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MethyltransfD12 PF02086.15 gi|261403494|ref|YP_003247718.1| - 0.0017 18.1 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.6 gi|261403494|ref|YP_003247718.1| - 0.0021 18.7 0.0 0.0044 17.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|261403494|ref|YP_003247718.1| - 0.0084 15.8 0.0 0.24 11.0 0.0 2.4 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F PRMT5 PF05185.16 gi|261403494|ref|YP_003247718.1| - 0.01 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_31 PF13847.6 gi|261403494|ref|YP_003247718.1| - 0.014 15.2 0.0 0.044 13.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|261403494|ref|YP_003247718.1| - 0.014 15.1 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 DNA methylase Methyltransf_23 PF13489.6 gi|261403494|ref|YP_003247718.1| - 0.053 13.3 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain AAA PF00004.29 gi|261403496|ref|YP_003247720.1| - 3e-16 60.0 0.5 2.2e-15 57.2 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|261403496|ref|YP_003247720.1| - 1.8e-12 47.6 0.0 1.8e-12 47.6 0.0 2.6 2 1 1 3 3 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|261403496|ref|YP_003247720.1| - 2.9e-10 40.1 0.0 6.2e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|261403496|ref|YP_003247720.1| - 4.2e-08 32.6 0.1 1.3e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DNA_pol3_delta PF06144.13 gi|261403496|ref|YP_003247720.1| - 1.3e-06 28.3 0.0 1.3e-06 28.3 0.0 3.7 4 1 0 4 4 3 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|261403496|ref|YP_003247720.1| - 2e-06 27.7 0.0 6.5e-06 26.0 0.0 1.9 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_14 PF13173.6 gi|261403496|ref|YP_003247720.1| - 2.1e-06 27.8 0.0 2.1e-06 27.8 0.0 2.9 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|261403496|ref|YP_003247720.1| - 5.7e-06 26.7 1.2 0.0015 18.8 0.0 3.8 3 3 2 5 5 5 1 AAA domain AAA_16 PF13191.6 gi|261403496|ref|YP_003247720.1| - 2.6e-05 24.7 0.0 0.0012 19.3 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|261403496|ref|YP_003247720.1| - 5.8e-05 23.4 0.2 0.00072 19.8 0.0 2.6 3 0 0 3 3 2 1 AAA domain NACHT PF05729.12 gi|261403496|ref|YP_003247720.1| - 6.1e-05 23.0 0.0 0.079 12.9 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_5 PF07728.14 gi|261403496|ref|YP_003247720.1| - 7.8e-05 22.7 0.0 0.0003 20.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|261403496|ref|YP_003247720.1| - 0.00012 22.3 0.6 0.0003 21.0 0.0 2.1 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.12 gi|261403496|ref|YP_003247720.1| - 0.00021 20.6 2.4 0.00021 20.6 0.0 2.2 3 0 0 3 3 2 1 Zeta toxin AAA_assoc_2 PF16193.5 gi|261403496|ref|YP_003247720.1| - 0.00039 20.7 0.1 0.00039 20.7 0.1 3.1 2 1 0 2 2 1 1 AAA C-terminal domain AAA_17 PF13207.6 gi|261403496|ref|YP_003247720.1| - 0.00091 19.7 0.0 0.00091 19.7 0.0 3.8 2 1 1 3 3 2 1 AAA domain AAA_18 PF13238.6 gi|261403496|ref|YP_003247720.1| - 0.0017 18.9 0.1 0.0017 18.9 0.1 3.0 2 1 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|261403496|ref|YP_003247720.1| - 0.0024 17.4 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|261403496|ref|YP_003247720.1| - 0.0031 17.1 0.0 0.0079 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|261403496|ref|YP_003247720.1| - 0.0033 17.8 0.0 0.0033 17.8 0.0 2.5 3 0 0 3 3 2 1 RNA helicase Mg_chelatase PF01078.21 gi|261403496|ref|YP_003247720.1| - 0.0035 16.8 0.0 0.0063 15.9 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|261403496|ref|YP_003247720.1| - 0.0094 15.0 0.0 0.052 12.6 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein RMMBL PF07521.12 gi|261403496|ref|YP_003247720.1| - 0.026 14.5 0.0 7.1 6.6 0.0 2.9 2 0 0 2 2 2 0 Zn-dependent metallo-hydrolase RNA specificity domain TsaE PF02367.17 gi|261403496|ref|YP_003247720.1| - 0.026 14.5 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|261403496|ref|YP_003247720.1| - 0.031 14.8 8.6 0.058 13.9 0.0 3.2 2 1 0 3 3 3 0 ABC transporter AAA_30 PF13604.6 gi|261403496|ref|YP_003247720.1| - 0.042 13.6 0.0 0.1 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|261403496|ref|YP_003247720.1| - 0.18 11.9 1.9 0.2 11.8 0.0 2.1 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|261403496|ref|YP_003247720.1| - 0.59 9.9 0.0 0.59 9.9 0.0 3.1 2 1 0 2 2 1 0 AAA domain AAA_19 PF13245.6 gi|261403496|ref|YP_003247720.1| - 1.6 9.0 6.0 1.3 9.3 0.1 3.2 3 1 1 4 4 4 0 AAA domain Hydin_ADK PF17213.3 gi|261403496|ref|YP_003247720.1| - 3.5 7.9 0.0 3.5 7.9 0.0 2.5 2 0 0 2 2 1 0 Hydin Adenylate kinase-like domain Radical_SAM_C PF16199.5 gi|261403497|ref|YP_003247721.1| - 2.3e-23 82.0 0.4 5.2e-23 80.9 0.4 1.6 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|261403497|ref|YP_003247721.1| - 3.6e-19 69.8 0.1 8.6e-19 68.5 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily tRNA_bind_4 PF18490.1 gi|261403498|ref|YP_003247722.1| - 2.1e-52 177.1 4.8 3.9e-52 176.3 4.8 1.4 1 0 0 1 1 1 1 tRNA-binding domain tRNA-synt_2b PF00587.25 gi|261403498|ref|YP_003247722.1| - 2e-09 37.7 0.0 4.4e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Pribosyltran_N PF13793.6 gi|261403499|ref|YP_003247723.1| - 6.7e-29 100.2 2.0 1.4e-26 92.7 0.4 2.4 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|261403499|ref|YP_003247723.1| - 2.1e-21 76.1 0.7 3.4e-19 68.9 0.2 2.3 2 0 0 2 2 2 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|261403499|ref|YP_003247723.1| - 1.9e-10 41.1 0.5 4.4e-10 39.9 0.5 1.6 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|261403499|ref|YP_003247723.1| - 1.7e-06 27.7 0.1 3.9e-06 26.5 0.0 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|261403499|ref|YP_003247723.1| - 0.0022 17.5 0.1 0.0054 16.3 0.1 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase Peptidase_S51 PF03575.17 gi|261403499|ref|YP_003247723.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S51 MMR_HSR1 PF01926.23 gi|261403500|ref|YP_003247724.1| - 4.5e-22 78.3 4.8 9.2e-18 64.4 0.0 3.0 3 0 0 3 3 3 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261403500|ref|YP_003247724.1| - 2e-13 50.2 3.7 1.4e-09 37.7 0.3 2.6 2 1 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|261403500|ref|YP_003247724.1| - 1.5e-09 38.0 0.6 4e-09 36.6 0.6 1.6 1 0 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|261403500|ref|YP_003247724.1| - 4.2e-09 36.7 9.4 0.0019 18.3 0.2 3.8 3 2 1 4 4 4 3 Dynamin family GTP_EFTU PF00009.27 gi|261403500|ref|YP_003247724.1| - 2.3e-06 27.3 1.4 0.00015 21.3 0.2 3.1 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Bse634I PF07832.11 gi|261403500|ref|YP_003247724.1| - 5e-05 22.8 0.8 0.00011 21.6 0.8 1.5 1 0 0 1 1 1 1 Cfr10I/Bse634I restriction endonuclease MMR_HSR1_Xtn PF16897.5 gi|261403500|ref|YP_003247724.1| - 8.4e-05 22.5 0.4 8.4e-05 22.5 0.4 2.4 3 0 0 3 3 3 1 C-terminal region of MMR_HSR1 domain AIG1 PF04548.16 gi|261403500|ref|YP_003247724.1| - 0.0012 18.2 0.2 0.0078 15.6 0.0 2.2 2 0 0 2 2 2 1 AIG1 family ABC_tran PF00005.27 gi|261403500|ref|YP_003247724.1| - 0.0034 17.9 6.9 0.032 14.8 1.5 2.8 2 1 1 3 3 3 1 ABC transporter Roc PF08477.13 gi|261403500|ref|YP_003247724.1| - 0.006 16.8 1.2 0.5 10.6 0.1 2.7 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase TraB PF01963.17 gi|261403500|ref|YP_003247724.1| - 0.012 15.5 0.1 0.15 12.0 0.0 2.2 2 1 0 2 2 2 0 TraB family MeaB PF03308.16 gi|261403500|ref|YP_003247724.1| - 0.072 12.1 0.5 0.14 11.1 0.1 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF4840 PF16128.5 gi|261403500|ref|YP_003247724.1| - 0.18 11.9 3.2 7.5 6.6 0.1 2.9 3 1 1 4 4 4 0 Domain of unknown function (DUF4840) UPF0128 PF03673.13 gi|261403501|ref|YP_003247725.1| - 5.6e-106 353.0 1.4 6.9e-106 352.7 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) CE2_N PF17996.1 gi|261403501|ref|YP_003247725.1| - 0.14 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate esterase 2 N-terminal TetR_C_27 PF17935.1 gi|261403502|ref|YP_003247726.1| - 0.1 12.6 0.1 0.14 12.2 0.1 1.4 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF3584 PF12128.8 gi|261403503|ref|YP_003247727.1| - 0.0038 14.8 0.3 0.0052 14.4 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) V4R PF02830.18 gi|261403504|ref|YP_003247728.1| - 3.6e-12 46.1 0.4 5.9e-12 45.4 0.4 1.3 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|261403504|ref|YP_003247728.1| - 9.3e-05 22.4 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2507) FKBP_C PF00254.28 gi|261403505|ref|YP_003247729.1| - 8.6e-21 74.1 0.0 1.6e-20 73.2 0.0 1.5 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF150_C PF17384.2 gi|261403505|ref|YP_003247729.1| - 0.034 14.3 1.2 1.9 8.7 0.2 2.4 2 0 0 2 2 2 0 RimP C-terminal SH3 domain TPP_enzyme_N PF02776.18 gi|261403506|ref|YP_003247730.1| - 5e-65 218.3 0.0 2.4e-62 209.6 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|261403506|ref|YP_003247730.1| - 1.2e-54 183.8 0.0 2.5e-54 182.7 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|261403506|ref|YP_003247730.1| - 2.7e-49 166.9 0.0 1e-48 165.0 0.0 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Pyr_redox_2 PF07992.14 gi|261403507|ref|YP_003247731.1| - 5.2e-45 153.9 3.4 5.9e-45 153.7 3.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|261403507|ref|YP_003247731.1| - 2.1e-27 96.2 9.6 3.1e-23 82.5 0.6 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|261403507|ref|YP_003247731.1| - 3.2e-10 40.4 5.5 1.9e-09 38.0 0.2 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|261403507|ref|YP_003247731.1| - 1.8e-07 30.7 4.4 0.00096 18.3 0.5 3.1 3 1 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|261403507|ref|YP_003247731.1| - 7.6e-05 22.2 0.4 0.19 11.1 0.0 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|261403507|ref|YP_003247731.1| - 0.00032 19.5 5.5 0.025 13.3 1.3 3.2 4 0 0 4 4 4 2 HI0933-like protein Thi4 PF01946.17 gi|261403507|ref|YP_003247731.1| - 0.0085 15.4 1.2 0.034 13.4 0.5 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|261403507|ref|YP_003247731.1| - 0.015 15.6 0.3 0.024 14.9 0.3 1.3 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain GMC_oxred_N PF00732.19 gi|261403507|ref|YP_003247731.1| - 0.02 14.3 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase FAD_binding_3 PF01494.19 gi|261403507|ref|YP_003247731.1| - 0.025 13.9 0.0 0.032 13.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.6 gi|261403507|ref|YP_003247731.1| - 0.035 14.1 0.4 5.1 7.1 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|261403507|ref|YP_003247731.1| - 0.13 11.3 0.2 4.6 6.3 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|261403507|ref|YP_003247731.1| - 0.3 10.6 1.3 24 4.4 2.0 2.2 1 1 1 2 2 2 0 FAD dependent oxidoreductase CBS PF00571.28 gi|261403508|ref|YP_003247732.1| - 5.3e-26 90.8 2.1 1.5e-13 51.0 0.1 2.1 2 0 0 2 2 2 2 CBS domain CobU PF02283.16 gi|261403508|ref|YP_003247732.1| - 0.0086 15.7 0.1 0.015 14.9 0.1 1.4 1 1 0 1 1 1 1 Cobinamide kinase / cobinamide phosphate guanyltransferase Rad51 PF08423.11 gi|261403509|ref|YP_003247733.1| - 3.8e-83 278.7 0.0 4.8e-83 278.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|261403509|ref|YP_003247733.1| - 6.2e-15 55.6 0.7 1.8e-14 54.1 0.7 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|261403509|ref|YP_003247733.1| - 2e-11 43.9 0.6 1.6e-10 40.9 0.6 1.9 1 1 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|261403509|ref|YP_003247733.1| - 2.9e-10 39.9 0.7 5.5e-09 35.7 0.7 2.3 1 1 0 1 1 1 1 KaiC HHH PF00633.23 gi|261403509|ref|YP_003247733.1| - 1.1e-09 37.6 0.9 0.00018 21.2 0.0 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|261403509|ref|YP_003247733.1| - 7.5e-08 32.2 0.0 1.4e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain HHH_3 PF12836.7 gi|261403509|ref|YP_003247733.1| - 3.6e-05 23.9 0.1 0.045 14.0 0.1 2.5 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|261403509|ref|YP_003247733.1| - 4e-05 23.6 0.0 0.00011 22.2 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|261403509|ref|YP_003247733.1| - 0.0004 20.1 0.0 0.025 14.4 0.0 2.8 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_8 PF14716.6 gi|261403509|ref|YP_003247733.1| - 0.0011 19.3 1.5 0.7 10.3 0.0 3.0 3 0 0 3 3 2 2 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|261403509|ref|YP_003247733.1| - 0.0017 18.5 0.0 0.018 15.2 0.0 2.5 1 1 1 2 2 2 1 Pathogenicity locus IMS_HHH PF11798.8 gi|261403509|ref|YP_003247733.1| - 0.0043 17.3 0.3 0.13 12.6 0.0 3.2 3 0 0 3 3 3 1 IMS family HHH motif AAA_24 PF13479.6 gi|261403509|ref|YP_003247733.1| - 0.0088 15.8 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain 5_3_exonuc PF01367.20 gi|261403509|ref|YP_003247733.1| - 0.034 14.8 0.7 1.7 9.3 0.1 2.8 2 1 1 3 3 2 0 5'-3' exonuclease, C-terminal SAM fold PAXNEB PF05625.11 gi|261403509|ref|YP_003247733.1| - 0.034 13.3 0.0 0.25 10.4 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein BAF PF02961.14 gi|261403509|ref|YP_003247733.1| - 0.038 14.4 0.1 0.62 10.5 0.0 2.8 3 0 0 3 3 3 0 Barrier to autointegration factor AAA PF00004.29 gi|261403509|ref|YP_003247733.1| - 0.057 13.9 0.2 0.68 10.4 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 gi|261403509|ref|YP_003247733.1| - 0.064 12.8 0.0 0.39 10.3 0.0 2.2 3 0 0 3 3 3 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_33 PF13671.6 gi|261403509|ref|YP_003247733.1| - 0.084 13.0 0.0 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF711 PF05167.12 gi|261403510|ref|YP_003247734.1| - 1.6e-176 587.2 9.6 2e-176 586.9 9.6 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) GTP_EFTU PF00009.27 gi|261403511|ref|YP_003247735.1| - 2.9e-55 186.8 0.0 4e-55 186.4 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|261403511|ref|YP_003247735.1| - 7.3e-38 129.3 0.7 1.9e-37 128.0 0.1 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|261403511|ref|YP_003247735.1| - 1.2e-16 60.9 0.5 8.1e-16 58.2 0.6 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|261403511|ref|YP_003247735.1| - 4.4e-08 33.2 0.1 1.7e-07 31.3 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|261403511|ref|YP_003247735.1| - 1.5e-05 24.8 0.9 5.3e-05 23.1 0.9 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.12 gi|261403511|ref|YP_003247735.1| - 0.00088 18.7 0.2 0.0014 18.0 0.2 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|261403511|ref|YP_003247735.1| - 0.0013 18.7 0.5 0.066 13.1 0.2 2.4 1 1 1 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 gi|261403511|ref|YP_003247735.1| - 0.0022 17.6 1.0 0.018 14.6 0.6 2.5 2 1 0 2 2 2 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|261403511|ref|YP_003247735.1| - 0.0065 16.2 0.2 0.074 12.8 0.2 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.22 gi|261403511|ref|YP_003247735.1| - 0.0072 15.9 0.1 0.018 14.6 0.1 1.6 1 0 0 1 1 1 1 Ras family Arf PF00025.21 gi|261403511|ref|YP_003247735.1| - 0.031 13.7 0.2 0.19 11.2 0.1 2.3 3 0 0 3 3 3 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|261403511|ref|YP_003247735.1| - 0.066 12.6 0.1 0.33 10.4 0.0 2.0 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit cobW PF02492.19 gi|261403511|ref|YP_003247735.1| - 0.08 12.5 0.3 0.21 11.1 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|261403511|ref|YP_003247735.1| - 0.098 12.7 0.2 8.8 6.4 0.1 2.6 2 1 0 2 2 2 0 Dynamin family SHOCT PF09851.9 gi|261403511|ref|YP_003247735.1| - 1.9 8.3 4.6 16 5.4 1.4 2.9 3 0 0 3 3 3 0 Short C-terminal domain Ribosomal_S10 PF00338.22 gi|261403512|ref|YP_003247736.1| - 2.2e-28 98.4 0.1 2.4e-28 98.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|261403512|ref|YP_003247736.1| - 0.019 15.7 0.1 0.038 14.8 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain Thymidylat_synt PF00303.19 gi|261403513|ref|YP_003247737.1| - 4.8e-20 71.8 0.7 2e-19 69.8 0.3 1.7 1 1 1 2 2 2 1 Thymidylate synthase SirA PF10747.9 gi|261403513|ref|YP_003247737.1| - 0.016 15.6 2.9 0.021 15.1 0.5 2.1 2 0 0 2 2 2 0 Sporulation inhibitor of replication protein SirA ParA PF10609.9 gi|261403514|ref|YP_003247738.1| - 2.9e-102 341.3 1.1 3.4e-102 341.1 1.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|261403514|ref|YP_003247738.1| - 8.8e-16 58.1 0.0 1.2e-14 54.5 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|261403514|ref|YP_003247738.1| - 2e-10 40.9 2.3 4.3e-08 33.3 0.3 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|261403514|ref|YP_003247738.1| - 2.1e-07 30.5 0.1 5.8e-07 29.1 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|261403514|ref|YP_003247738.1| - 3.6e-07 29.9 0.6 2.2e-05 24.0 0.2 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|261403514|ref|YP_003247738.1| - 7.2e-06 25.4 4.9 3e-05 23.4 0.4 2.6 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|261403514|ref|YP_003247738.1| - 0.00024 20.8 0.1 0.0004 20.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|261403514|ref|YP_003247738.1| - 0.00031 20.3 0.1 0.014 14.9 0.1 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ APS_kinase PF01583.20 gi|261403514|ref|YP_003247738.1| - 0.00073 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|261403514|ref|YP_003247738.1| - 0.00091 19.2 2.2 0.0031 17.4 0.5 2.3 3 0 0 3 3 2 1 RsgA GTPase AAA_26 PF13500.6 gi|261403514|ref|YP_003247738.1| - 0.00098 19.0 0.5 0.59 9.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain MeaB PF03308.16 gi|261403514|ref|YP_003247738.1| - 0.0018 17.3 0.4 0.0029 16.6 0.1 1.5 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|261403514|ref|YP_003247738.1| - 0.0026 18.3 0.1 0.0093 16.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|261403514|ref|YP_003247738.1| - 0.0032 16.8 0.2 0.0074 15.6 0.1 1.6 2 0 0 2 2 2 1 Zeta toxin VirC1 PF07015.11 gi|261403514|ref|YP_003247738.1| - 0.011 15.0 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein CLP1_P PF16575.5 gi|261403514|ref|YP_003247738.1| - 0.013 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 gi|261403514|ref|YP_003247738.1| - 0.024 12.8 0.2 0.043 12.0 0.2 1.4 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase SRP54 PF00448.22 gi|261403514|ref|YP_003247738.1| - 0.032 13.9 1.2 0.073 12.7 0.3 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KTI12 PF08433.10 gi|261403514|ref|YP_003247738.1| - 0.064 12.7 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Glutaredoxin PF00462.24 gi|261403514|ref|YP_003247738.1| - 0.074 13.3 0.1 1 9.6 0.0 2.7 2 1 0 2 2 2 0 Glutaredoxin Hpr_kinase_C PF07475.12 gi|261403514|ref|YP_003247738.1| - 0.099 12.2 1.8 3.7 7.0 0.1 2.6 2 1 0 2 2 2 0 HPr Serine kinase C-terminal domain AAA_30 PF13604.6 gi|261403514|ref|YP_003247738.1| - 0.11 12.3 0.2 0.18 11.5 0.2 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|261403514|ref|YP_003247738.1| - 0.14 12.1 0.3 0.23 11.4 0.3 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|261403514|ref|YP_003247738.1| - 0.16 11.0 0.2 0.25 10.4 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|261403514|ref|YP_003247738.1| - 0.17 12.2 0.1 0.31 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain Putative_PNPOx PF01243.20 gi|261403515|ref|YP_003247739.1| - 6.1e-14 52.0 0.0 8.3e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HydF_dimer PF18128.1 gi|261403515|ref|YP_003247739.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Hydrogen maturase F dimerization domain Radical_SAM_N PF08497.10 gi|261403516|ref|YP_003247740.1| - 4.4e-112 374.2 0.0 6.7e-112 373.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM N-terminal DUF3362 PF11842.8 gi|261403516|ref|YP_003247740.1| - 6e-17 62.4 0.1 1.1e-16 61.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3362) Radical_SAM PF04055.21 gi|261403516|ref|YP_003247740.1| - 1.1e-14 55.1 2.0 3.3e-13 50.4 0.5 2.9 3 0 0 3 3 3 1 Radical SAM superfamily DapB_C PF05173.14 gi|261403517|ref|YP_003247741.1| - 6.1e-44 148.9 0.2 9.2e-44 148.3 0.2 1.3 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|261403517|ref|YP_003247741.1| - 6.6e-39 132.8 2.6 6.6e-39 132.8 2.6 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|261403517|ref|YP_003247741.1| - 0.0003 21.2 0.5 0.001 19.5 0.1 2.0 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|261403517|ref|YP_003247741.1| - 0.0023 17.5 0.0 0.0054 16.2 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_3 PF03447.16 gi|261403517|ref|YP_003247741.1| - 0.0096 16.6 0.3 0.024 15.3 0.3 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|261403517|ref|YP_003247741.1| - 0.013 15.8 0.2 0.27 11.6 0.0 2.5 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Nitro_FeMo-Co PF02579.17 gi|261403517|ref|YP_003247741.1| - 0.022 15.1 4.1 1.3 9.4 0.1 2.7 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor 3Beta_HSD PF01073.19 gi|261403517|ref|YP_003247741.1| - 0.03 13.4 0.4 0.063 12.3 0.1 1.6 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family CoA_binding PF02629.19 gi|261403517|ref|YP_003247741.1| - 0.054 14.2 1.5 0.16 12.7 1.5 1.9 1 0 0 1 1 1 0 CoA binding domain RmlD_sub_bind PF04321.17 gi|261403517|ref|YP_003247741.1| - 0.075 12.1 0.1 0.2 10.7 0.1 1.7 1 1 0 1 1 1 0 RmlD substrate binding domain DUF531 PF04407.12 gi|261403517|ref|YP_003247741.1| - 0.11 12.5 0.4 0.54 10.3 0.0 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF531) MMR_HSR1_C PF08438.10 gi|261403518|ref|YP_003247742.1| - 6.6e-34 116.9 1.2 1e-33 116.3 0.2 1.8 2 0 0 2 2 2 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|261403518|ref|YP_003247742.1| - 8.2e-26 90.3 0.0 2.9e-24 85.3 0.0 2.7 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|261403518|ref|YP_003247742.1| - 5.5e-15 55.2 0.1 1.1e-14 54.1 0.1 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|261403518|ref|YP_003247742.1| - 5.4e-12 45.5 0.2 1.4e-09 37.6 0.1 2.6 2 0 0 2 2 2 2 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|261403518|ref|YP_003247742.1| - 9.2e-05 22.6 1.6 0.0016 18.6 0.2 2.9 2 1 0 2 2 2 1 Protein of unknown function (DUF933) GTP_EFTU PF00009.27 gi|261403518|ref|YP_003247742.1| - 0.0014 18.2 0.9 1.1 8.7 0.2 3.2 2 1 0 3 3 3 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|261403518|ref|YP_003247742.1| - 0.012 14.6 0.1 0.51 9.3 0.0 2.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DAPDH_C PF16654.5 gi|261403518|ref|YP_003247742.1| - 0.029 14.2 0.2 0.24 11.2 0.1 2.4 1 1 1 2 2 2 0 Diaminopimelic acid dehydrogenase C-terminal domain AAA_18 PF13238.6 gi|261403518|ref|YP_003247742.1| - 0.037 14.6 1.5 0.34 11.4 0.0 2.8 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|261403518|ref|YP_003247742.1| - 0.061 13.4 0.2 1.3 9.0 0.0 3.0 3 1 0 4 4 4 0 Dynamin family COG5 PF10392.9 gi|261403518|ref|YP_003247742.1| - 0.13 12.5 0.0 0.42 10.8 0.0 1.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 RsgA_GTPase PF03193.16 gi|261403518|ref|YP_003247742.1| - 0.16 11.8 0.2 4 7.3 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase HnRNP_M PF11532.8 gi|261403518|ref|YP_003247742.1| - 0.27 11.5 1.2 28 5.0 0.1 2.8 3 0 0 3 3 2 0 Heterogeneous nuclear ribonucleoprotein M Ribosomal_L12_N PF16320.5 gi|261403519|ref|YP_003247743.1| - 0.048 13.4 1.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain EamA PF00892.20 gi|261403520|ref|YP_003247744.1| - 4.3e-23 82.0 22.5 4.7e-23 81.9 22.5 1.0 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.16 gi|261403520|ref|YP_003247744.1| - 1.5e-05 24.5 11.9 1.7e-05 24.4 11.9 1.1 1 0 0 1 1 1 1 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|261403520|ref|YP_003247744.1| - 8.8e-05 22.5 8.8 0.00021 21.3 8.8 1.8 1 1 0 1 1 1 1 Putative transmembrane family 234 Mg_trans_NIPA PF05653.14 gi|261403520|ref|YP_003247744.1| - 0.0014 17.8 4.2 0.0014 17.8 4.2 2.2 1 1 2 3 3 3 1 Magnesium transporter NIPA Multi_Drug_Res PF00893.19 gi|261403520|ref|YP_003247744.1| - 0.016 15.8 10.2 0.016 15.8 10.2 2.3 1 1 0 2 2 2 0 Small Multidrug Resistance protein UAA PF08449.11 gi|261403520|ref|YP_003247744.1| - 0.027 13.7 11.4 0.046 12.9 11.2 1.6 1 1 0 1 1 1 0 UAA transporter family DUF2070 PF09843.9 gi|261403520|ref|YP_003247744.1| - 8.7 4.5 19.5 11 4.1 19.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) NTP_transferase PF00483.23 gi|261403521|ref|YP_003247745.1| - 1.6e-30 106.5 0.1 3e-30 105.6 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|261403521|ref|YP_003247745.1| - 3.7e-08 33.9 0.0 5.1e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|261403521|ref|YP_003247745.1| - 0.00032 20.6 0.0 0.00046 20.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 IspD PF01128.19 gi|261403521|ref|YP_003247745.1| - 0.07 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Robl_LC7 PF03259.17 gi|261403522|ref|YP_003247746.1| - 9.1e-12 44.6 0.1 1e-11 44.4 0.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain LAMTOR5 PF16672.5 gi|261403522|ref|YP_003247746.1| - 0.094 12.7 0.4 0.12 12.3 0.4 1.2 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 V4R PF02830.18 gi|261403523|ref|YP_003247747.1| - 7e-10 38.8 0.0 9.9e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 V4R domain DUF2507 PF10702.9 gi|261403523|ref|YP_003247747.1| - 0.01 15.8 0.0 0.016 15.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2507) TRAPP PF04051.16 gi|261403523|ref|YP_003247747.1| - 0.12 12.1 0.1 0.53 10.0 0.0 1.8 1 1 0 2 2 2 0 Transport protein particle (TRAPP) component Phosphorylase PF00343.20 gi|261403524|ref|YP_003247748.1| - 3.5e-14 52.0 1.8 3.6e-08 32.2 0.0 4.0 3 1 1 4 4 4 3 Carbohydrate phosphorylase DUF3417 PF11897.8 gi|261403524|ref|YP_003247748.1| - 0.072 13.6 0.5 1.5 9.3 0.0 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF3417) Class_IIIsignal PF04021.12 gi|261403525|ref|YP_003247749.1| - 3.1e-05 23.8 3.1 4.5e-05 23.3 3.1 1.2 1 0 0 1 1 1 1 Class III signal peptide Class_IIIsignal PF04021.12 gi|261403526|ref|YP_003247750.1| - 5.8e-11 42.0 2.6 7.8e-11 41.6 2.6 1.2 1 0 0 1 1 1 1 Class III signal peptide 4HB_MCP_1 PF12729.7 gi|261403526|ref|YP_003247750.1| - 0.0012 18.5 1.0 0.0012 18.4 1.0 1.1 1 0 0 1 1 1 1 Four helix bundle sensory module for signal transduction TMP_2 PF06791.13 gi|261403526|ref|YP_003247750.1| - 0.0025 17.5 0.7 0.0026 17.4 0.7 1.0 1 0 0 1 1 1 1 Prophage tail length tape measure protein DUF948 PF06103.11 gi|261403526|ref|YP_003247750.1| - 0.0065 16.7 0.4 0.01 16.0 0.4 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF4330 PF14221.6 gi|261403526|ref|YP_003247750.1| - 0.0079 16.4 0.3 0.0086 16.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4330) SseC PF04888.12 gi|261403526|ref|YP_003247750.1| - 0.025 14.2 4.3 0.026 14.2 4.3 1.0 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family HemX PF04375.14 gi|261403526|ref|YP_003247750.1| - 0.025 13.9 0.2 0.028 13.7 0.2 1.0 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase NDUF_B6 PF09782.9 gi|261403526|ref|YP_003247750.1| - 0.14 12.3 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit DUF347 PF03988.12 gi|261403526|ref|YP_003247750.1| - 6.8 7.0 8.6 0.8 9.9 0.9 2.6 2 1 1 3 3 3 0 Repeat of Unknown Function (DUF347) Class_IIIsignal PF04021.12 gi|261403527|ref|YP_003247751.1| - 2.8e-05 23.9 2.6 3.7e-05 23.6 2.6 1.2 1 0 0 1 1 1 1 Class III signal peptide HTH_34 PF13601.6 gi|261403528|ref|YP_003247752.1| - 3.2e-22 78.5 0.8 3.7e-22 78.3 0.8 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|261403528|ref|YP_003247752.1| - 6.4e-08 32.5 0.0 9.2e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|261403528|ref|YP_003247752.1| - 2.6e-07 30.4 0.1 5e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|261403528|ref|YP_003247752.1| - 2.2e-05 24.3 0.0 3.3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|261403528|ref|YP_003247752.1| - 0.0016 17.9 0.0 0.0037 16.8 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|261403528|ref|YP_003247752.1| - 0.0019 18.1 0.1 0.0028 17.6 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|261403528|ref|YP_003247752.1| - 0.0028 18.1 0.0 0.0034 17.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.17 gi|261403528|ref|YP_003247752.1| - 0.03 14.2 0.2 0.035 14.0 0.2 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|261403528|ref|YP_003247752.1| - 0.18 11.7 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Phage_holin_3_6 PF07332.11 gi|261403529|ref|YP_003247753.1| - 0.67 10.0 12.5 0.22 11.6 0.5 2.7 1 1 2 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III SdpI PF13630.6 gi|261403529|ref|YP_003247753.1| - 2.1 8.5 18.1 0.96 9.6 0.8 3.1 3 0 0 3 3 3 0 SdpI/YhfL protein family GGACT PF06094.12 gi|261403530|ref|YP_003247754.1| - 1.1e-09 38.9 2.0 1.4e-09 38.6 2.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like RNase_PH_C PF03725.15 gi|261403530|ref|YP_003247754.1| - 0.14 12.2 0.2 0.3 11.2 0.1 1.5 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 HMD PF03201.16 gi|261403531|ref|YP_003247755.1| - 1.1e-36 124.9 1.9 1.1e-36 124.9 1.9 2.2 3 0 0 3 3 3 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|261403531|ref|YP_003247755.1| - 0.024 14.8 0.1 0.08 13.1 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|261403531|ref|YP_003247755.1| - 0.053 14.1 0.0 0.17 12.5 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TFIIA_gamma_N PF02268.16 gi|261403531|ref|YP_003247755.1| - 0.2 11.7 0.5 1.1 9.3 0.1 2.2 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain DUF2085 PF09858.9 gi|261403532|ref|YP_003247756.1| - 7.5e-32 109.7 1.4 7.5e-32 109.7 1.4 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2085) DUF5518 PF17647.1 gi|261403533|ref|YP_003247757.1| - 4.2e-06 26.9 29.5 5.4e-06 26.5 29.5 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Insulin_TMD PF17870.1 gi|261403533|ref|YP_003247757.1| - 4.3 7.5 16.5 0.16 12.0 2.3 3.0 3 0 0 3 3 3 0 Insulin receptor trans-membrane segment CytB6-F_Fe-S PF08802.10 gi|261403533|ref|YP_003247757.1| - 8.4 6.5 10.8 4.4 7.4 0.4 3.3 3 0 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Amidohydro_1 PF01979.20 gi|261403534|ref|YP_003247758.1| - 4.7e-15 55.7 0.4 1.1e-14 54.5 0.4 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|261403534|ref|YP_003247758.1| - 2.4e-08 33.9 0.0 0.0012 18.4 0.1 2.2 2 0 0 2 2 2 2 Amidohydrolase family tRNA-synt_2d PF01409.20 gi|261403535|ref|YP_003247759.1| - 5.9e-98 327.2 0.0 1.4e-97 326.0 0.0 1.6 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|261403535|ref|YP_003247759.1| - 1.6e-11 44.1 0.0 2.2e-10 40.4 0.0 2.2 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|261403535|ref|YP_003247759.1| - 6.4e-08 32.0 0.5 0.00011 21.4 0.0 3.6 3 0 0 3 3 3 1 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.25 gi|261403535|ref|YP_003247759.1| - 0.017 15.1 0.5 0.088 12.8 0.0 2.4 3 0 0 3 3 3 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF1858 PF08984.11 gi|261403535|ref|YP_003247759.1| - 0.032 14.4 0.5 0.76 10.0 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1858) SecA_PP_bind PF01043.20 gi|261403535|ref|YP_003247759.1| - 0.034 14.8 2.6 0.3 11.8 0.1 2.5 2 0 0 2 2 2 0 SecA preprotein cross-linking domain HTH_45 PF14947.6 gi|261403535|ref|YP_003247759.1| - 0.043 13.8 1.6 0.092 12.7 0.3 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix tRNA-synt_His PF13393.6 gi|261403535|ref|YP_003247759.1| - 0.054 12.8 0.0 2 7.6 0.0 2.3 2 0 0 2 2 2 0 Histidyl-tRNA synthetase AAA_assoc_C PF09821.9 gi|261403535|ref|YP_003247759.1| - 0.58 10.7 5.5 3.9 8.0 0.1 2.9 2 1 1 3 3 3 0 C-terminal AAA-associated domain Mnd1 PF03962.15 gi|261403535|ref|YP_003247759.1| - 1 9.7 6.3 0.23 11.8 0.6 2.9 3 0 0 3 3 3 0 Mnd1 HTH domain MMR_HSR1 PF01926.23 gi|261403536|ref|YP_003247760.1| - 2.3e-17 63.1 0.1 3.4e-17 62.6 0.1 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|261403536|ref|YP_003247760.1| - 2.7e-11 43.2 0.2 2.3e-10 40.2 0.2 2.1 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|261403536|ref|YP_003247760.1| - 5e-07 29.8 0.3 0.021 14.7 0.2 2.5 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|261403536|ref|YP_003247760.1| - 0.0013 18.3 0.1 0.024 14.2 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|261403536|ref|YP_003247760.1| - 0.002 17.2 0.5 0.013 14.5 0.0 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|261403536|ref|YP_003247760.1| - 0.0088 16.1 1.5 0.67 10.0 1.5 2.6 1 1 0 1 1 1 1 Dynamin family ABC_tran PF00005.27 gi|261403536|ref|YP_003247760.1| - 0.012 16.1 0.1 0.019 15.5 0.1 1.4 1 1 0 1 1 1 0 ABC transporter SRPRB PF09439.10 gi|261403536|ref|YP_003247760.1| - 0.016 14.7 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|261403536|ref|YP_003247760.1| - 0.063 12.5 0.3 0.3 10.3 0.3 2.0 1 1 0 1 1 1 0 Septin Roc PF08477.13 gi|261403536|ref|YP_003247760.1| - 0.12 12.7 2.1 0.16 12.2 0.1 2.2 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|261403536|ref|YP_003247760.1| - 0.17 11.4 0.8 0.31 10.6 0.2 1.6 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Ras PF00071.22 gi|261403536|ref|YP_003247760.1| - 0.26 10.8 2.3 0.55 9.8 0.3 2.1 2 1 0 2 2 2 0 Ras family GATase PF00117.28 gi|261403537|ref|YP_003247761.1| - 6.6e-51 172.8 0.0 8.4e-51 172.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|261403537|ref|YP_003247761.1| - 2e-44 150.5 0.0 3.6e-44 149.7 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|261403537|ref|YP_003247761.1| - 8.2e-10 38.8 0.3 3e-07 30.4 0.3 2.2 1 1 0 1 1 1 1 Peptidase C26 Inhibitor_I24 PF10465.9 gi|261403537|ref|YP_003247761.1| - 0.0086 16.1 0.3 0.018 15.0 0.3 1.5 1 0 0 1 1 1 1 PinA peptidase inhibitor 2-Hacid_dh_C PF02826.19 gi|261403538|ref|YP_003247762.1| - 2.8e-69 232.0 0.0 2.9e-68 228.7 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|261403538|ref|YP_003247762.1| - 2.8e-46 156.5 1.4 4.7e-46 155.8 0.5 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|261403538|ref|YP_003247762.1| - 2e-12 46.7 2.1 1e-11 44.4 0.0 3.0 3 0 0 3 3 3 1 ACT domain NAD_binding_2 PF03446.15 gi|261403538|ref|YP_003247762.1| - 1.3e-10 41.6 0.4 7.2e-10 39.3 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|261403538|ref|YP_003247762.1| - 4.1e-05 24.1 1.6 0.0025 18.3 0.0 3.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|261403538|ref|YP_003247762.1| - 8.4e-05 22.7 1.5 0.013 15.6 0.1 2.4 2 0 0 2 2 2 2 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|261403538|ref|YP_003247762.1| - 0.00016 22.0 0.1 0.0026 18.2 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IlvN PF07991.12 gi|261403538|ref|YP_003247762.1| - 0.00026 20.6 1.5 0.0063 16.1 0.0 2.9 3 1 1 4 4 4 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACT_4 PF13291.6 gi|261403538|ref|YP_003247762.1| - 0.01 16.4 0.0 0.06 13.9 0.0 2.4 1 1 0 1 1 1 0 ACT domain AlaDh_PNT_N PF05222.15 gi|261403538|ref|YP_003247762.1| - 0.033 14.5 0.1 0.22 11.8 0.0 2.3 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, N-terminal domain Phage_holin_3_6 PF07332.11 gi|261403539|ref|YP_003247763.1| - 0.77 9.8 5.2 1.1 9.3 5.2 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4577 PF15145.6 gi|261403539|ref|YP_003247763.1| - 5.9 6.9 6.7 13 5.9 6.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4577) PAPS_reduct PF01507.19 gi|261403540|ref|YP_003247764.1| - 2.4e-07 31.0 0.0 4.4e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|261403540|ref|YP_003247764.1| - 2.7e-05 23.8 0.0 0.0003 20.4 0.0 2.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|261403540|ref|YP_003247764.1| - 0.00016 21.3 0.0 0.003 17.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) IMS PF00817.20 gi|261403540|ref|YP_003247764.1| - 0.099 12.6 0.0 8.7 6.3 0.0 2.4 1 1 1 2 2 2 0 impB/mucB/samB family KH_5 PF13184.6 gi|261403540|ref|YP_003247764.1| - 0.15 12.2 0.4 0.41 10.8 0.0 1.8 2 0 0 2 2 2 0 NusA-like KH domain MCPsignal PF00015.21 gi|261403541|ref|YP_003247765.1| - 5.8e-37 127.1 52.6 2e-35 122.1 20.3 4.2 2 2 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Rhodanese PF00581.20 gi|261403541|ref|YP_003247765.1| - 1.6e-13 51.1 0.1 7.5e-13 48.9 0.0 2.2 2 0 0 2 2 2 1 Rhodanese-like domain DUF948 PF06103.11 gi|261403541|ref|YP_003247765.1| - 0.00062 20.0 48.5 0.11 12.8 5.4 7.1 3 2 4 7 7 7 4 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 gi|261403541|ref|YP_003247765.1| - 0.00075 17.8 43.6 0.00075 17.8 43.6 2.9 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA Mce4_CUP1 PF11887.8 gi|261403541|ref|YP_003247765.1| - 0.0038 16.7 9.0 0.33 10.4 2.6 3.5 3 1 0 3 3 3 1 Cholesterol uptake porter CUP1 of Mce4, putative Jnk-SapK_ap_N PF09744.9 gi|261403541|ref|YP_003247765.1| - 0.0072 16.6 14.3 0.0072 16.6 14.3 3.9 2 1 2 4 4 4 2 JNK_SAPK-associated protein-1 WXG100 PF06013.12 gi|261403541|ref|YP_003247765.1| - 0.058 13.6 20.8 5.8 7.2 5.4 6.1 4 3 2 6 6 6 0 Proteins of 100 residues with WXG Collagen_mid PF15984.5 gi|261403541|ref|YP_003247765.1| - 0.059 13.1 2.0 0.28 10.9 0.2 2.3 1 1 0 2 2 2 0 Bacterial collagen, middle region DUF1320 PF07030.12 gi|261403541|ref|YP_003247765.1| - 0.094 12.8 0.1 0.094 12.8 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1320) DUF1664 PF07889.12 gi|261403541|ref|YP_003247765.1| - 0.42 10.7 47.7 0.93 9.5 3.8 5.4 3 2 3 6 6 5 0 Protein of unknown function (DUF1664) HAMP PF00672.25 gi|261403541|ref|YP_003247765.1| - 0.73 10.3 5.2 36 4.8 0.0 5.0 5 1 0 5 5 3 0 HAMP domain IFT57 PF10498.9 gi|261403541|ref|YP_003247765.1| - 0.94 8.4 45.8 0.38 9.7 15.6 4.5 3 1 2 5 5 5 0 Intra-flagellar transport protein 57 TolA_bind_tri PF16331.5 gi|261403541|ref|YP_003247765.1| - 1.8 8.7 10.4 0.24 11.5 2.6 3.4 4 0 0 4 4 4 0 TolA binding protein trimerisation YscO PF07321.12 gi|261403541|ref|YP_003247765.1| - 1.8 8.5 36.8 0.092 12.7 3.6 3.9 2 1 1 3 3 3 0 Type III secretion protein YscO Spectrin PF00435.21 gi|261403541|ref|YP_003247765.1| - 2.7 8.5 35.1 5.9 7.4 0.4 5.3 3 1 2 5 5 5 0 Spectrin repeat HSBP1 PF06825.12 gi|261403541|ref|YP_003247765.1| - 3.4 7.6 20.7 5.3 7.0 0.1 6.9 7 1 1 8 8 8 0 Heat shock factor binding protein 1 CHDCT2 PF08074.11 gi|261403541|ref|YP_003247765.1| - 4.7 7.4 24.5 1.8 8.7 2.7 3.3 2 1 1 3 3 3 0 CHDCT2 (NUC038) domain Laminin_II PF06009.12 gi|261403541|ref|YP_003247765.1| - 8.1 6.5 48.9 5.5 7.0 11.1 5.3 3 2 3 6 6 6 0 Laminin Domain II Taxilin PF09728.9 gi|261403541|ref|YP_003247765.1| - 8.3 5.5 41.4 9.3 5.3 1.3 4.1 2 1 2 4 4 4 0 Myosin-like coiled-coil protein Laminin_I PF06008.14 gi|261403541|ref|YP_003247765.1| - 8.9 5.9 50.6 1.4 8.5 4.0 4.3 2 1 2 4 4 4 0 Laminin Domain I CHASE3 PF05227.13 gi|261403541|ref|YP_003247765.1| - 9.9 6.1 22.5 17 5.3 0.9 4.7 2 1 3 5 5 5 0 CHASE3 domain ATPase PF06745.13 gi|261403542|ref|YP_003247766.1| - 4e-92 307.8 0.0 4.4e-92 307.6 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|261403542|ref|YP_003247766.1| - 0.00016 21.3 0.0 0.00022 20.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|261403542|ref|YP_003247766.1| - 0.0003 20.1 0.1 0.00069 19.0 0.0 1.6 2 0 0 2 2 2 1 Rad51 GvpD PF07088.11 gi|261403542|ref|YP_003247766.1| - 0.00046 18.9 0.0 0.039 12.6 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein PPV_E1_C PF00519.17 gi|261403542|ref|YP_003247766.1| - 0.0062 15.4 0.0 0.0096 14.8 0.0 1.2 1 0 0 1 1 1 1 Papillomavirus helicase DnaB_C PF03796.15 gi|261403542|ref|YP_003247766.1| - 0.0077 15.6 0.0 0.0099 15.2 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain T2SSE PF00437.20 gi|261403542|ref|YP_003247766.1| - 0.0077 15.3 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|261403542|ref|YP_003247766.1| - 0.0095 15.9 0.3 0.045 13.6 0.3 1.9 1 1 0 1 1 1 1 NTPase AAA_7 PF12775.7 gi|261403542|ref|YP_003247766.1| - 0.058 12.9 0.0 0.085 12.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|261403542|ref|YP_003247766.1| - 0.064 12.5 0.0 0.078 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|261403542|ref|YP_003247766.1| - 0.068 13.4 0.0 0.11 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|261403542|ref|YP_003247766.1| - 0.073 13.4 0.0 0.12 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|261403542|ref|YP_003247766.1| - 0.089 13.1 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain HutP PF09021.11 gi|261403542|ref|YP_003247766.1| - 0.091 13.1 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 HutP AAA_14 PF13173.6 gi|261403542|ref|YP_003247766.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain F420_ligase PF01996.16 gi|261403544|ref|YP_003247768.1| - 8.8e-34 116.9 0.0 1.2e-33 116.5 0.0 1.4 1 1 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Memo PF01875.17 gi|261403545|ref|YP_003247769.1| - 9.8e-98 326.6 0.0 1.1e-97 326.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|261403545|ref|YP_003247769.1| - 0.003 16.7 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Mo-nitro_C PF06967.11 gi|261403545|ref|YP_003247769.1| - 0.031 14.2 0.0 0.066 13.2 0.0 1.5 1 0 0 1 1 1 0 Mo-dependent nitrogenase C-terminus DUF5320 PF17253.2 gi|261403546|ref|YP_003247770.1| - 0.0016 19.5 12.5 0.017 16.1 12.5 2.1 1 1 0 1 1 1 1 Family of unknown function (DUF5320) TPR_MLP1_2 PF07926.12 gi|261403546|ref|YP_003247770.1| - 0.014 15.4 5.0 0.017 15.2 5.0 1.1 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF2353 PF09789.9 gi|261403546|ref|YP_003247770.1| - 0.015 14.7 2.7 0.017 14.5 2.7 1.0 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Zn-ribbon_8 PF09723.10 gi|261403547|ref|YP_003247771.1| - 0.0027 17.8 1.4 0.0053 16.9 1.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|261403547|ref|YP_003247771.1| - 0.004 17.2 0.4 0.004 17.2 0.4 1.4 2 0 0 2 2 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|261403547|ref|YP_003247771.1| - 0.01 15.2 3.2 0.073 12.5 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|261403547|ref|YP_003247771.1| - 0.015 14.8 6.2 0.11 12.1 0.1 2.4 2 1 1 3 3 3 0 TFIIB zinc-binding FAM76 PF16046.5 gi|261403547|ref|YP_003247771.1| - 0.019 14.3 0.5 0.021 14.2 0.5 1.0 1 0 0 1 1 1 0 FAM76 protein HypA PF01155.19 gi|261403547|ref|YP_003247771.1| - 0.038 14.0 0.1 0.044 13.8 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MCM_OB PF17207.3 gi|261403547|ref|YP_003247771.1| - 0.065 13.1 0.3 0.073 12.9 0.3 1.1 1 0 0 1 1 1 0 MCM OB domain zinc_ribbon_9 PF14369.6 gi|261403547|ref|YP_003247771.1| - 0.084 13.2 0.8 0.13 12.5 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon zf_UBZ PF18439.1 gi|261403547|ref|YP_003247771.1| - 0.22 11.1 2.9 1 9.0 0.1 2.5 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger YyzF PF14116.6 gi|261403547|ref|YP_003247771.1| - 0.25 11.4 2.4 0.64 10.1 2.4 1.7 1 1 0 1 1 1 0 YyzF-like protein Ogr_Delta PF04606.12 gi|261403547|ref|YP_003247771.1| - 0.44 10.6 0.4 0.44 10.6 0.4 2.2 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.6 gi|261403547|ref|YP_003247771.1| - 0.5 10.3 0.2 0.5 10.3 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|261403547|ref|YP_003247771.1| - 2.5 8.1 7.1 4.9 7.2 1.9 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|261403547|ref|YP_003247771.1| - 4.1 7.2 11.0 0.45 10.3 1.5 2.5 3 0 0 3 3 3 0 zinc-ribbon domain DeoC PF01791.9 gi|261403548|ref|YP_003247772.1| - 6e-72 242.1 0.1 7e-72 241.8 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase OMPdecase PF00215.24 gi|261403548|ref|YP_003247772.1| - 0.011 15.3 0.2 0.025 14.2 0.1 1.7 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PucR PF07905.11 gi|261403548|ref|YP_003247772.1| - 0.069 13.4 0.0 1.7 8.9 0.0 2.6 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family PEP_mutase PF13714.6 gi|261403548|ref|YP_003247772.1| - 0.12 11.9 0.8 8 5.8 0.2 3.0 2 1 1 3 3 3 0 Phosphoenolpyruvate phosphomutase PGM_PMM_I PF02878.16 gi|261403549|ref|YP_003247773.1| - 9.8e-28 96.6 0.0 2.6e-27 95.2 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|261403549|ref|YP_003247773.1| - 7.7e-24 84.3 0.1 6.8e-23 81.2 0.0 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|261403549|ref|YP_003247773.1| - 1.9e-18 66.7 0.0 3.4e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|261403549|ref|YP_003247773.1| - 1.4e-11 44.4 0.0 4.2e-11 42.9 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Phage_int_SAM_3 PF14659.6 gi|261403549|ref|YP_003247773.1| - 0.94 9.8 4.0 0.76 10.1 0.4 2.8 4 0 0 4 4 4 0 Phage integrase, N-terminal SAM-like domain DUF126 PF01989.16 gi|261403550|ref|YP_003247774.1| - 3.8e-27 93.9 0.1 6.4e-27 93.2 0.1 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain Radical_SAM PF04055.21 gi|261403551|ref|YP_003247775.1| - 4.6e-19 69.4 0.3 6.7e-19 68.9 0.3 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Seryl_tRNA_N PF02403.22 gi|261403551|ref|YP_003247775.1| - 0.057 13.6 0.3 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain YcaO PF02624.16 gi|261403552|ref|YP_003247776.1| - 2.1e-76 257.3 0.0 2.9e-76 256.8 0.0 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Cytokin_check_N PF10407.9 gi|261403552|ref|YP_003247776.1| - 0.063 13.2 0.6 11 6.1 0.1 3.1 3 0 0 3 3 3 0 Cdc14 phosphatase binding protein N-terminus N6_N4_Mtase PF01555.18 gi|261403553|ref|YP_003247777.1| - 4e-55 187.0 0.7 5.3e-55 186.6 0.7 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|261403553|ref|YP_003247777.1| - 7.2e-06 26.6 0.0 0.094 13.4 0.0 3.2 2 1 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.18 gi|261403553|ref|YP_003247777.1| - 4.3e-05 23.3 0.0 0.24 11.1 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|261403553|ref|YP_003247777.1| - 0.004 17.8 0.0 1.9 9.2 0.0 2.8 2 1 0 2 2 2 1 Methyltransferase domain HU-CCDC81_bac_2 PF18175.1 gi|261403553|ref|YP_003247777.1| - 0.021 14.7 0.0 0.075 12.9 0.0 1.9 2 0 0 2 2 2 0 CCDC81-like prokaryotic HU domain 2 Methyltransf_15 PF09445.10 gi|261403553|ref|YP_003247777.1| - 0.023 14.3 0.0 0.91 9.1 0.0 2.3 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase VPR PF00522.18 gi|261403553|ref|YP_003247777.1| - 0.073 13.1 0.2 0.39 10.8 0.1 2.1 2 0 0 2 2 2 0 VPR/VPX protein Cons_hypoth95 PF03602.15 gi|261403553|ref|YP_003247777.1| - 0.088 12.4 0.0 0.58 9.8 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical protein 95 CBM_11 PF03425.13 gi|261403554|ref|YP_003247778.1| - 0.002 18.0 0.1 0.0026 17.7 0.1 1.3 1 0 0 1 1 1 1 Carbohydrate binding domain (family 11) Mrr_cat PF04471.12 gi|261403554|ref|YP_003247778.1| - 0.13 12.3 0.1 0.24 11.4 0.1 1.4 1 0 0 1 1 1 0 Restriction endonuclease Histidinol_dh PF00815.20 gi|261403555|ref|YP_003247779.1| - 6e-172 572.3 1.5 6.8e-172 572.1 1.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase DUF1128 PF06569.11 gi|261403556|ref|YP_003247780.1| - 0.021 14.8 0.1 0.05 13.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1128) TatD_DNase PF01026.21 gi|261403557|ref|YP_003247781.1| - 1.9e-60 204.4 0.2 2.2e-60 204.2 0.2 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|261403557|ref|YP_003247781.1| - 0.014 14.7 1.2 0.75 9.0 0.1 2.2 1 1 0 2 2 2 0 Amidohydrolase family OTCace_N PF02729.21 gi|261403558|ref|YP_003247782.1| - 2.7e-52 176.7 0.0 3.8e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|261403558|ref|YP_003247782.1| - 3.8e-26 92.0 0.0 5.5e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TP_methylase PF00590.20 gi|261403559|ref|YP_003247783.1| - 5.9e-52 176.7 0.0 6.7e-52 176.5 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|261403559|ref|YP_003247783.1| - 0.14 12.5 0.3 0.28 11.6 0.3 1.7 1 1 0 1 1 1 0 Radical SAM superfamily Rpr2 PF04032.16 gi|261403560|ref|YP_003247784.1| - 2.8e-18 66.0 0.1 4.9e-18 65.2 0.1 1.4 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain ADK_lid PF05191.14 gi|261403560|ref|YP_003247784.1| - 0.00011 22.1 1.9 0.32 11.0 0.0 2.3 2 0 0 2 2 2 2 Adenylate kinase, active site lid A2L_zn_ribbon PF08792.10 gi|261403560|ref|YP_003247784.1| - 0.0056 16.4 0.9 0.53 10.1 0.1 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|261403560|ref|YP_003247784.1| - 0.0095 15.8 1.9 0.16 11.9 0.1 2.5 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|261403560|ref|YP_003247784.1| - 0.012 15.6 0.1 0.019 15.0 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|261403560|ref|YP_003247784.1| - 0.038 14.4 0.7 0.089 13.2 0.7 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|261403560|ref|YP_003247784.1| - 0.11 11.9 1.7 2.1 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|261403560|ref|YP_003247784.1| - 0.56 10.1 2.2 49 3.9 0.1 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) MCM PF00493.23 gi|261403561|ref|YP_003247785.1| - 6.8e-75 251.0 0.0 1.1e-74 250.4 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|261403561|ref|YP_003247785.1| - 1.5e-20 73.4 1.6 2.1e-19 69.7 0.1 3.0 3 0 0 3 3 3 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|261403561|ref|YP_003247785.1| - 7.7e-16 58.1 0.7 1.8e-15 56.9 0.2 1.8 2 0 0 2 2 2 1 MCM OB domain Mg_chelatase PF01078.21 gi|261403561|ref|YP_003247785.1| - 9.5e-11 41.5 0.0 5.7e-07 29.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|261403561|ref|YP_003247785.1| - 9.6e-09 35.4 0.0 2.3e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|261403561|ref|YP_003247785.1| - 0.0007 20.0 0.0 0.0018 18.7 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain Mrr_N PF14338.6 gi|261403561|ref|YP_003247785.1| - 0.011 15.8 0.1 0.081 13.1 0.0 2.4 3 0 0 3 3 2 0 Mrr N-terminal domain AAA_22 PF13401.6 gi|261403561|ref|YP_003247785.1| - 0.022 15.0 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|261403561|ref|YP_003247785.1| - 0.027 14.4 0.0 0.51 10.2 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|261403561|ref|YP_003247785.1| - 0.098 12.4 0.2 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|261403561|ref|YP_003247785.1| - 0.19 12.1 0.1 0.39 11.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain TAL_FSA PF00923.19 gi|261403562|ref|YP_003247786.1| - 7e-65 219.2 0.4 5.1e-64 216.4 0.4 2.0 1 1 0 1 1 1 1 Transaldolase/Fructose-6-phosphate aldolase Aminotran_5 PF00266.19 gi|261403563|ref|YP_003247787.1| - 2.1e-44 152.0 0.1 2.5e-44 151.8 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|261403563|ref|YP_003247787.1| - 2.4e-07 29.7 0.2 3.7e-07 29.0 0.2 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|261403563|ref|YP_003247787.1| - 6.4e-07 28.9 0.1 2.4e-06 27.0 0.1 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|261403563|ref|YP_003247787.1| - 1.1e-05 24.9 1.0 3.7e-05 23.2 1.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase MatE PF01554.18 gi|261403564|ref|YP_003247788.1| - 5.6e-63 211.4 36.6 1.8e-34 118.7 12.2 2.9 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|261403564|ref|YP_003247788.1| - 7.4e-08 32.6 34.5 3e-07 30.6 18.0 4.6 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain UPF0020 PF01170.18 gi|261403565|ref|YP_003247789.1| - 3.7e-31 108.4 0.0 2.7e-30 105.5 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|261403565|ref|YP_003247789.1| - 5.5e-18 65.4 8.3 5.5e-18 65.4 8.3 1.6 2 0 0 2 2 2 1 THUMP domain N6_N4_Mtase PF01555.18 gi|261403565|ref|YP_003247789.1| - 7.7e-12 45.4 0.1 3.2e-09 36.8 0.1 2.3 2 0 0 2 2 2 2 DNA methylase Cons_hypoth95 PF03602.15 gi|261403565|ref|YP_003247789.1| - 1.1e-07 31.7 0.0 1.8e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|261403565|ref|YP_003247789.1| - 1.3e-07 31.2 0.0 3.8e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|261403565|ref|YP_003247789.1| - 2.5e-07 30.4 0.0 5.8e-07 29.2 0.0 1.7 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|261403565|ref|YP_003247789.1| - 1.2e-05 25.2 0.0 2.5e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|261403565|ref|YP_003247789.1| - 0.00075 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 MraW methylase family MTS PF05175.14 gi|261403565|ref|YP_003247789.1| - 0.00094 18.8 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain DUF334 PF03904.13 gi|261403565|ref|YP_003247789.1| - 0.0039 16.8 1.7 0.0039 16.8 1.7 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF334) Methyltransf_25 PF13649.6 gi|261403565|ref|YP_003247789.1| - 0.0063 17.2 0.0 0.012 16.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|261403565|ref|YP_003247789.1| - 0.022 14.2 0.1 2.9 7.3 0.0 2.2 1 1 1 2 2 2 0 RRNA methyltransferase AviRa Methyltransf_23 PF13489.6 gi|261403565|ref|YP_003247789.1| - 0.062 13.1 0.0 0.26 11.1 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain PAPS_reduct PF01507.19 gi|261403566|ref|YP_003247790.1| - 2.4e-51 174.2 0.2 6.7e-51 172.8 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|261403566|ref|YP_003247790.1| - 0.0004 19.9 0.0 0.00085 18.9 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.17 gi|261403566|ref|YP_003247790.1| - 0.0017 17.5 0.0 0.0029 16.8 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Tubulin PF00091.25 gi|261403566|ref|YP_003247790.1| - 0.013 15.7 0.0 0.023 14.9 0.0 1.3 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain MarC PF01914.17 gi|261403567|ref|YP_003247791.1| - 2.3e-72 242.7 12.0 2.6e-72 242.5 12.0 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF3099 PF11298.8 gi|261403567|ref|YP_003247791.1| - 0.042 14.0 0.6 0.14 12.3 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3099) Carbam_trans_C PF16861.5 gi|261403568|ref|YP_003247792.1| - 3e-59 199.4 0.0 4.8e-59 198.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|261403568|ref|YP_003247792.1| - 3.7e-38 132.1 0.6 1.7e-28 100.3 0.1 2.3 1 1 1 2 2 2 2 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|261403568|ref|YP_003247792.1| - 5.7e-08 32.8 0.0 1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family DUF2097 PF09870.9 gi|261403568|ref|YP_003247792.1| - 0.019 15.2 2.4 0.4 10.9 0.2 3.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2097) Sua5_yciO_yrdC PF01300.18 gi|261403568|ref|YP_003247792.1| - 0.077 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Telomere recombination Peptidase_S66C PF17676.1 gi|261403568|ref|YP_003247792.1| - 0.087 13.4 0.0 2.6 8.6 0.0 2.4 2 0 0 2 2 2 0 LD-carboxypeptidase C-terminal domain Shikimate_DH PF01488.20 gi|261403569|ref|YP_003247793.1| - 2e-42 144.5 0.4 2e-42 144.5 0.4 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|261403569|ref|YP_003247793.1| - 1.9e-32 112.0 0.5 4e-32 111.0 0.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|261403569|ref|YP_003247793.1| - 1.6e-10 41.3 1.4 1.6e-10 41.3 1.4 2.6 3 0 0 3 3 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|261403569|ref|YP_003247793.1| - 1.3e-08 35.3 0.6 4.5e-08 33.6 0.6 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.15 gi|261403569|ref|YP_003247793.1| - 4.9e-08 32.3 0.0 8.4e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family 2-Hacid_dh_C PF02826.19 gi|261403569|ref|YP_003247793.1| - 1.9e-06 27.4 0.2 4.4e-06 26.2 0.2 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|261403569|ref|YP_003247793.1| - 1.2e-05 25.7 0.7 3.7e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding THF_DHG_CYH_C PF02882.19 gi|261403569|ref|YP_003247793.1| - 0.00014 21.2 0.3 0.0045 16.3 0.2 2.7 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Hydrolase_6 PF13344.6 gi|261403569|ref|YP_003247793.1| - 0.0002 21.4 0.1 0.16 12.1 0.0 2.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Sacchrp_dh_NADP PF03435.18 gi|261403569|ref|YP_003247793.1| - 0.0003 21.1 0.1 0.0012 19.1 0.1 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Glu_dehyd_C PF16912.5 gi|261403569|ref|YP_003247793.1| - 0.00031 20.3 0.0 0.00066 19.2 0.0 1.5 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Hydrolase PF00702.26 gi|261403569|ref|YP_003247793.1| - 0.0021 18.4 1.3 0.0056 17.0 0.8 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase NAD_binding_2 PF03446.15 gi|261403569|ref|YP_003247793.1| - 0.0026 18.0 0.0 0.0062 16.7 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase COQ7 PF03232.13 gi|261403569|ref|YP_003247793.1| - 0.0051 16.6 0.3 0.011 15.5 0.3 1.5 1 0 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 AdoHcyase_NAD PF00670.21 gi|261403569|ref|YP_003247793.1| - 0.0054 16.8 0.8 0.032 14.3 0.1 2.4 1 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DapB_N PF01113.20 gi|261403569|ref|YP_003247793.1| - 0.0056 16.8 0.2 0.035 14.2 0.0 2.4 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.18 gi|261403569|ref|YP_003247793.1| - 0.015 15.6 1.0 0.067 13.4 0.3 2.5 2 1 0 2 2 2 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|261403569|ref|YP_003247793.1| - 0.031 15.1 0.1 0.083 13.7 0.1 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.6 gi|261403569|ref|YP_003247793.1| - 0.071 13.0 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding IlvN PF07991.12 gi|261403569|ref|YP_003247793.1| - 0.075 12.6 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Biotin_carb_N PF00289.22 gi|261403569|ref|YP_003247793.1| - 0.1 13.1 0.4 2.7 8.6 0.1 2.6 3 0 0 3 3 2 0 Biotin carboxylase, N-terminal domain Ribosomal_L22 PF00237.19 gi|261403569|ref|YP_003247793.1| - 0.3 11.3 0.1 0.3 11.3 0.1 2.4 2 1 0 2 2 2 0 Ribosomal protein L22p/L17e PglD_N PF17836.1 gi|261403569|ref|YP_003247793.1| - 0.49 11.1 0.1 0.49 11.1 0.1 3.0 3 0 0 3 3 3 0 PglD N-terminal domain Dus PF01207.17 gi|261403570|ref|YP_003247794.1| - 3.1e-06 26.5 0.0 0.00053 19.2 0.0 2.9 2 1 0 2 2 2 1 Dihydrouridine synthase (Dus) Peptidase_Mx1 PF15890.5 gi|261403570|ref|YP_003247794.1| - 0.023 14.1 0.2 0.037 13.4 0.2 1.4 1 0 0 1 1 1 0 Putative zinc-binding metallo-peptidase TcdA_TcdB_pore PF12920.7 gi|261403570|ref|YP_003247794.1| - 0.052 11.8 0.2 0.089 11.0 0.2 1.5 1 1 0 1 1 1 0 TcdA/TcdB pore forming domain GCH_III PF05165.12 gi|261403571|ref|YP_003247795.1| - 2.6e-125 416.6 0.3 3e-125 416.4 0.3 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III RQC PF09382.10 gi|261403571|ref|YP_003247795.1| - 0.02 14.7 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 RQC domain Nyv1_N PF09426.10 gi|261403571|ref|YP_003247795.1| - 0.038 14.0 0.2 0.063 13.3 0.2 1.3 1 0 0 1 1 1 0 Vacuolar R-SNARE Nyv1 N terminal mCpol PF18182.1 gi|261403571|ref|YP_003247795.1| - 0.041 14.2 0.1 0.082 13.2 0.1 1.6 1 0 0 1 1 1 0 minimal CRISPR polymerase domain Fer4 PF00037.27 gi|261403572|ref|YP_003247796.1| - 6.9e-13 47.8 12.5 4.7e-07 29.3 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403572|ref|YP_003247796.1| - 2.3e-09 37.7 7.1 3.1e-09 37.3 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403572|ref|YP_003247796.1| - 2.7e-09 37.0 7.1 0.00032 20.8 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403572|ref|YP_003247796.1| - 1.3e-08 34.8 6.3 2.3e-08 34.1 6.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403572|ref|YP_003247796.1| - 8.1e-08 32.0 12.3 0.00017 21.5 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403572|ref|YP_003247796.1| - 1.6e-07 31.3 8.8 2.4e-07 30.7 8.8 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403572|ref|YP_003247796.1| - 3.5e-07 31.0 8.3 0.0012 19.7 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261403572|ref|YP_003247796.1| - 3.2e-05 23.8 12.2 0.00049 20.0 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|261403572|ref|YP_003247796.1| - 0.0033 18.2 15.1 0.26 12.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261403572|ref|YP_003247796.1| - 0.0058 17.2 10.2 0.082 13.5 10.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403572|ref|YP_003247796.1| - 0.0083 16.6 11.2 0.16 12.5 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261403572|ref|YP_003247796.1| - 0.015 15.9 9.0 0.14 12.7 9.0 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|261403572|ref|YP_003247796.1| - 0.021 15.0 6.5 0.022 14.9 1.6 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|261403572|ref|YP_003247796.1| - 0.025 15.3 10.2 0.16 12.7 0.5 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|261403572|ref|YP_003247796.1| - 0.032 15.1 4.8 0.8 10.6 0.9 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403572|ref|YP_003247796.1| - 0.12 12.9 10.2 9 6.8 10.2 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261403572|ref|YP_003247796.1| - 0.28 11.4 10.4 0.79 9.9 1.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|261403573|ref|YP_003247797.1| - 6.4e-21 75.4 1.2 1.7e-20 74.1 0.4 2.1 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|261403573|ref|YP_003247797.1| - 2.2e-19 69.5 0.0 7.5e-19 67.8 0.0 1.9 2 0 0 2 2 2 1 Wyosine base formation HAD PF12710.7 gi|261403573|ref|YP_003247797.1| - 0.021 15.2 0.0 0.18 12.2 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2119 PF09892.9 gi|261403573|ref|YP_003247797.1| - 0.084 12.2 0.2 0.31 10.4 0.0 1.9 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2119) Fer4_5 PF12801.7 gi|261403574|ref|YP_003247798.1| - 0.00034 20.5 5.2 0.00034 20.5 5.2 4.7 3 1 1 4 4 4 2 4Fe-4S binding domain SBP_bac_11 PF13531.6 gi|261403575|ref|YP_003247799.1| - 8.4e-20 71.5 0.0 1e-19 71.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|261403575|ref|YP_003247799.1| - 0.0088 15.5 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|261403575|ref|YP_003247799.1| - 0.015 15.1 0.0 0.077 12.8 0.0 2.0 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein Ribo_biogen_C PF04034.13 gi|261403576|ref|YP_003247800.1| - 1.4e-47 160.6 0.2 1.9e-47 160.1 0.2 1.2 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|261403576|ref|YP_003247800.1| - 6.3e-11 41.9 0.3 6.3e-11 41.9 0.3 1.9 2 0 0 2 2 2 1 Possible Fer4-like domain in RNase L inhibitor, RLI Ribosomal_L40e PF01020.17 gi|261403577|ref|YP_003247801.1| - 1.3e-06 28.2 6.7 1.6e-06 27.9 6.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|261403577|ref|YP_003247801.1| - 0.0038 17.2 0.8 0.004 17.1 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|261403577|ref|YP_003247801.1| - 0.0055 16.1 1.4 0.0072 15.7 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|261403577|ref|YP_003247801.1| - 0.0062 16.2 5.3 0.0062 16.2 5.3 1.7 2 1 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|261403577|ref|YP_003247801.1| - 0.0066 16.1 1.2 0.0095 15.6 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain SpoIIM PF01944.17 gi|261403578|ref|YP_003247802.1| - 3.7e-21 75.8 23.0 4.6e-21 75.5 23.0 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M HMG-CoA_red PF00368.18 gi|261403579|ref|YP_003247803.1| - 1.2e-132 442.4 0.3 1.3e-132 442.3 0.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase ABC_tran PF00005.27 gi|261403580|ref|YP_003247804.1| - 4.9e-53 179.3 0.3 5e-28 98.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|261403580|ref|YP_003247804.1| - 2.1e-13 50.8 1.5 0.0012 18.7 0.2 5.0 4 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|261403580|ref|YP_003247804.1| - 7.4e-10 39.2 1.0 0.0057 16.9 0.3 4.1 3 1 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|261403580|ref|YP_003247804.1| - 5.1e-09 36.2 1.3 0.00052 20.0 0.1 2.5 2 1 0 2 2 2 2 RsgA GTPase AAA_16 PF13191.6 gi|261403580|ref|YP_003247804.1| - 6.8e-09 36.3 0.1 0.0005 20.5 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|261403580|ref|YP_003247804.1| - 3.1e-08 33.3 3.9 0.017 14.6 0.0 3.9 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|261403580|ref|YP_003247804.1| - 2.3e-07 30.4 0.9 0.0021 17.8 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA PF00004.29 gi|261403580|ref|YP_003247804.1| - 1.5e-06 28.7 0.7 1.1 9.7 0.0 4.7 3 2 1 4 4 4 2 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|261403580|ref|YP_003247804.1| - 1.5e-05 25.0 0.0 0.049 13.6 0.0 2.6 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_23 PF13476.6 gi|261403580|ref|YP_003247804.1| - 2.1e-05 25.1 4.8 0.0029 18.2 2.1 2.6 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|261403580|ref|YP_003247804.1| - 2.6e-05 24.4 0.0 0.0016 18.6 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|261403580|ref|YP_003247804.1| - 4.4e-05 24.0 0.1 0.053 14.1 0.0 3.2 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|261403580|ref|YP_003247804.1| - 0.00013 21.3 0.3 0.45 9.7 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain TniB PF05621.11 gi|261403580|ref|YP_003247804.1| - 0.00015 21.3 1.3 4.7 6.6 0.1 4.7 4 1 1 5 5 5 0 Bacterial TniB protein AAA_30 PF13604.6 gi|261403580|ref|YP_003247804.1| - 0.00028 20.7 0.1 0.19 11.4 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|261403580|ref|YP_003247804.1| - 0.00039 20.2 8.3 0.028 14.1 0.6 4.0 2 2 2 4 4 4 1 AAA ATPase domain AAA_14 PF13173.6 gi|261403580|ref|YP_003247804.1| - 0.00072 19.6 0.7 1.3 9.0 0.0 3.9 4 1 0 4 4 4 1 AAA domain MMR_HSR1 PF01926.23 gi|261403580|ref|YP_003247804.1| - 0.00099 19.2 1.6 0.038 14.1 0.4 3.1 3 1 0 3 3 2 1 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|261403580|ref|YP_003247804.1| - 0.0015 18.3 0.1 2 8.1 0.0 3.0 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|261403580|ref|YP_003247804.1| - 0.0029 17.4 0.6 3.2 7.5 0.0 3.7 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|261403580|ref|YP_003247804.1| - 0.0062 16.7 0.0 0.96 9.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|261403580|ref|YP_003247804.1| - 0.0078 15.8 0.5 48 3.5 0.0 4.2 4 0 0 4 4 4 0 AAA domain AAA_7 PF12775.7 gi|261403580|ref|YP_003247804.1| - 0.0081 15.7 0.2 2.1 7.8 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region Roc PF08477.13 gi|261403580|ref|YP_003247804.1| - 0.0094 16.2 0.1 6.8 6.9 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|261403580|ref|YP_003247804.1| - 0.0099 15.8 0.2 0.83 9.5 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|261403580|ref|YP_003247804.1| - 0.011 15.7 0.3 5.8 6.9 0.1 2.9 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) PRK PF00485.18 gi|261403580|ref|YP_003247804.1| - 0.012 15.4 0.0 1.1 9.0 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family PSY3 PF16836.5 gi|261403580|ref|YP_003247804.1| - 0.017 14.6 0.0 4.6 6.7 0.0 2.5 2 0 0 2 2 2 0 Shu complex component Psy3, DNA-binding description RNA_helicase PF00910.22 gi|261403580|ref|YP_003247804.1| - 0.018 15.4 0.1 11 6.5 0.0 2.5 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.16 gi|261403580|ref|YP_003247804.1| - 0.02 14.4 0.0 1.3 8.5 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.12 gi|261403580|ref|YP_003247804.1| - 0.038 13.9 0.3 4.4 7.2 0.1 2.4 2 0 0 2 2 2 0 NACHT domain ATPase_2 PF01637.18 gi|261403580|ref|YP_003247804.1| - 0.042 13.8 3.5 4.2 7.2 0.0 3.1 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea ATP-synt_ab PF00006.25 gi|261403580|ref|YP_003247804.1| - 0.047 13.3 0.0 3.2 7.4 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin PF02224.18 gi|261403580|ref|YP_003247804.1| - 0.055 13.2 0.0 1.6 8.4 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Sigma54_activat PF00158.26 gi|261403580|ref|YP_003247804.1| - 0.068 12.9 0.3 30 4.3 0.0 3.2 3 0 0 3 3 3 0 Sigma-54 interaction domain MeaB PF03308.16 gi|261403580|ref|YP_003247804.1| - 0.075 12.0 0.2 0.18 10.8 0.0 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fe_dep_repr_C PF02742.15 gi|261403580|ref|YP_003247804.1| - 0.083 13.0 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Mg_chelatase PF01078.21 gi|261403580|ref|YP_003247804.1| - 0.11 11.8 0.0 9.8 5.5 0.0 2.8 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|261403580|ref|YP_003247804.1| - 0.14 12.1 0.2 17 5.4 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF87 PF01935.17 gi|261403580|ref|YP_003247804.1| - 0.52 10.4 5.4 0.81 9.7 0.6 2.8 2 2 1 3 3 3 0 Helicase HerA, central domain NTP_transf_3 PF12804.7 gi|261403581|ref|YP_003247805.1| - 2e-24 86.8 0.0 2.3e-24 86.5 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain SHS2_Rpb7-N PF03876.17 gi|261403582|ref|YP_003247806.1| - 8.2e-22 77.4 0.1 1.5e-21 76.5 0.1 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|261403582|ref|YP_003247806.1| - 1.9e-12 47.3 1.7 7.4e-12 45.4 1.7 2.0 1 1 0 1 1 1 1 S1 RNA binding domain Spt4 PF06093.13 gi|261403583|ref|YP_003247807.1| - 1.9e-14 53.5 0.8 2.8e-14 53.0 0.8 1.3 1 1 0 1 1 1 1 Spt4/RpoE2 zinc finger RecR PF02132.15 gi|261403583|ref|YP_003247807.1| - 0.00031 20.2 2.5 0.0004 19.9 2.5 1.2 1 0 0 1 1 1 1 RecR protein Prok-RING_4 PF14447.6 gi|261403583|ref|YP_003247807.1| - 0.012 15.4 1.6 0.016 15.1 1.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 CARD PF00619.21 gi|261403583|ref|YP_003247807.1| - 0.082 13.0 0.0 0.092 12.8 0.0 1.1 1 0 0 1 1 1 0 Caspase recruitment domain Rtf2 PF04641.12 gi|261403583|ref|YP_003247807.1| - 0.11 11.9 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Rtf2 RING-finger DUF359 PF04019.12 gi|261403584|ref|YP_003247808.1| - 8e-40 135.4 0.3 1e-39 135.0 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF4911 PF16256.5 gi|261403584|ref|YP_003247808.1| - 0.074 13.0 0.2 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4911) Scm3 PF10384.9 gi|261403584|ref|YP_003247808.1| - 0.76 9.6 4.4 1 9.2 1.5 2.2 2 0 0 2 2 2 0 Centromere protein Scm3 Ribosomal_S24e PF01282.19 gi|261403585|ref|YP_003247809.1| - 8.4e-21 73.7 0.3 9.9e-21 73.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|261403586|ref|YP_003247810.1| - 1.9e-20 72.7 5.3 2.3e-20 72.5 5.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|261403586|ref|YP_003247810.1| - 0.01 15.7 1.6 0.41 10.6 1.7 2.3 1 1 1 2 2 2 0 Nudix N-terminal GFA PF04828.14 gi|261403586|ref|YP_003247810.1| - 0.014 15.7 1.1 0.71 10.3 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 gi|261403586|ref|YP_003247810.1| - 0.017 15.3 0.6 0.017 15.3 0.6 1.6 2 0 0 2 2 2 0 Ribosomal protein L37e zinc_ribbon_13 PF09855.9 gi|261403586|ref|YP_003247810.1| - 0.12 12.5 2.5 0.93 9.7 0.1 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf_C2H2_10 PF18414.1 gi|261403586|ref|YP_003247810.1| - 0.18 11.3 6.6 0.96 9.0 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1936 PF09151.10 gi|261403586|ref|YP_003247810.1| - 0.28 11.1 4.6 0.6 10.1 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) TF_Zn_Ribbon PF08271.12 gi|261403586|ref|YP_003247810.1| - 0.56 9.8 5.8 1.9 8.1 5.8 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-HYPF PF07503.12 gi|261403586|ref|YP_003247810.1| - 0.7 9.7 3.6 2.7 7.9 0.3 2.3 2 0 0 2 2 2 0 HypF finger CBS PF00571.28 gi|261403587|ref|YP_003247811.1| - 3.2e-27 94.8 1.2 6.7e-13 48.9 0.6 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|261403587|ref|YP_003247811.1| - 5.5e-15 55.3 11.3 2.9e-07 30.0 0.7 2.9 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|261403587|ref|YP_003247811.1| - 1.1e-05 25.2 2.7 1.1e-05 25.2 2.7 2.0 2 0 0 2 2 2 1 Peptidase M50B-like DUF456 PF04306.13 gi|261403587|ref|YP_003247811.1| - 0.058 13.7 11.1 0.12 12.6 4.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF456) Methyltransf_31 PF13847.6 gi|261403589|ref|YP_003247813.1| - 4.6e-12 46.0 2.0 5.7e-12 45.7 2.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|261403589|ref|YP_003247813.1| - 4.1e-09 37.0 0.1 6.6e-09 36.4 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|261403589|ref|YP_003247813.1| - 1.3e-07 31.3 1.0 1.9e-07 30.8 0.5 1.5 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|261403589|ref|YP_003247813.1| - 5.6e-07 29.3 0.1 1.1e-06 28.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|261403589|ref|YP_003247813.1| - 2.5e-06 28.1 0.0 4.7e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|261403589|ref|YP_003247813.1| - 2.8e-06 27.3 2.6 3.8e-06 26.9 2.6 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|261403589|ref|YP_003247813.1| - 3.9e-06 27.5 0.1 5.9e-06 26.9 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|261403589|ref|YP_003247813.1| - 7.4e-06 25.2 0.5 1.5e-05 24.2 0.2 1.5 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.20 gi|261403589|ref|YP_003247813.1| - 7.7e-06 25.2 0.1 1.9e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase GidB PF02527.15 gi|261403589|ref|YP_003247813.1| - 2.1e-05 23.9 0.9 2.7e-05 23.6 0.9 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Cons_hypoth95 PF03602.15 gi|261403589|ref|YP_003247813.1| - 2.4e-05 24.0 0.1 3.8e-05 23.4 0.1 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|261403589|ref|YP_003247813.1| - 2.9e-05 23.9 1.2 4.1e-05 23.4 1.1 1.3 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|261403589|ref|YP_003247813.1| - 5.7e-05 22.6 0.1 5.7e-05 22.6 0.1 2.0 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.13 gi|261403589|ref|YP_003247813.1| - 8.8e-05 22.0 3.4 0.00021 20.8 3.4 1.6 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|261403589|ref|YP_003247813.1| - 0.00014 21.6 0.0 0.00027 20.6 0.0 1.4 1 1 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|261403589|ref|YP_003247813.1| - 0.00014 21.7 0.1 0.00034 20.4 0.0 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DOT1 PF08123.13 gi|261403589|ref|YP_003247813.1| - 0.00022 20.8 1.7 0.00058 19.4 0.1 1.9 1 1 1 2 2 2 1 Histone methylation protein DOT1 Methyltr_RsmB-F PF01189.17 gi|261403589|ref|YP_003247813.1| - 0.001 18.8 0.2 0.0021 17.7 0.1 1.5 1 1 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_23 PF13489.6 gi|261403589|ref|YP_003247813.1| - 0.0011 18.8 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|261403589|ref|YP_003247813.1| - 0.0013 18.1 0.3 0.002 17.5 0.1 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase N6_Mtase PF02384.16 gi|261403589|ref|YP_003247813.1| - 0.0033 16.8 0.1 0.0046 16.3 0.1 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase Telomere_res PF16684.5 gi|261403589|ref|YP_003247813.1| - 0.0096 15.4 0.9 0.011 15.3 0.9 1.2 1 0 0 1 1 1 1 Telomere resolvase TehB PF03848.14 gi|261403589|ref|YP_003247813.1| - 0.024 14.1 3.6 0.05 13.0 1.3 2.0 1 1 1 2 2 2 0 Tellurite resistance protein TehB DREV PF05219.12 gi|261403589|ref|YP_003247813.1| - 0.028 13.5 0.2 0.55 9.3 0.0 2.1 1 1 0 2 2 2 0 DREV methyltransferase Mtr2 PF10429.9 gi|261403589|ref|YP_003247813.1| - 0.037 13.9 0.2 0.049 13.6 0.2 1.2 1 0 0 1 1 1 0 Nuclear pore RNA shuttling protein Mtr2 GFRP PF06399.13 gi|261403589|ref|YP_003247813.1| - 0.042 13.7 0.0 0.094 12.6 0.0 1.5 1 1 0 1 1 1 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) Methyltransf_32 PF13679.6 gi|261403589|ref|YP_003247813.1| - 0.046 13.7 0.1 0.077 13.0 0.1 1.4 1 1 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|261403589|ref|YP_003247813.1| - 0.061 13.4 0.1 0.082 13.0 0.1 1.3 1 1 0 1 1 1 0 FtsJ-like methyltransferase Sin3_corepress PF08295.12 gi|261403590|ref|YP_003247814.1| - 0.0033 17.4 0.7 0.0062 16.6 0.7 1.4 1 0 0 1 1 1 1 Sin3 family co-repressor DUF4280 PF14107.6 gi|261403590|ref|YP_003247814.1| - 0.049 14.5 1.6 0.067 14.0 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4280) tRNA-synt_1b PF00579.25 gi|261403591|ref|YP_003247815.1| - 3.8e-48 164.3 0.0 4.8e-48 164.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|261403591|ref|YP_003247815.1| - 0.00073 18.5 1.1 0.55 9.1 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class I (K) DUF2067 PF09840.9 gi|261403592|ref|YP_003247816.1| - 8.4e-47 159.1 10.7 9.5e-47 159.0 10.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.6 gi|261403593|ref|YP_003247817.1| - 1.1e-20 73.2 0.3 1.4e-20 72.8 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|261403593|ref|YP_003247817.1| - 8e-06 25.2 0.0 1.7e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain AdoHcyase PF05221.17 gi|261403594|ref|YP_003247818.1| - 2.5e-66 223.8 0.0 1.7e-37 129.2 0.1 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|261403594|ref|YP_003247818.1| - 2.3e-54 183.8 1.5 2.3e-54 183.8 1.5 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|261403594|ref|YP_003247818.1| - 1.8e-10 40.5 0.5 8.7e-10 38.2 0.5 2.1 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|261403594|ref|YP_003247818.1| - 8.7e-07 28.6 0.1 1.6e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|261403594|ref|YP_003247818.1| - 0.0032 16.8 1.7 0.012 15.0 1.7 1.9 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|261403594|ref|YP_003247818.1| - 0.074 12.3 0.1 0.098 11.9 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|261403594|ref|YP_003247818.1| - 0.16 12.2 0.4 0.53 10.6 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain DUF4013 PF13197.6 gi|261403595|ref|YP_003247819.1| - 2.7e-18 66.4 31.3 2.7e-18 66.4 31.3 3.0 1 1 1 3 3 3 1 Protein of unknown function (DUF4013) DUF5534 PF17686.1 gi|261403595|ref|YP_003247819.1| - 0.26 11.5 0.2 0.26 11.5 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5534) Axin_b-cat_bind PF08833.10 gi|261403595|ref|YP_003247819.1| - 0.27 11.4 0.0 0.49 10.5 0.0 1.3 1 0 0 1 1 1 0 Axin beta-catenin binding domain Fer4 PF00037.27 gi|261403596|ref|YP_003247820.1| - 6.6e-24 82.7 41.7 3.6e-06 26.6 2.5 4.9 4 0 0 4 4 4 4 4Fe-4S binding domain Pyr_redox_2 PF07992.14 gi|261403596|ref|YP_003247820.1| - 9.8e-22 77.5 0.0 3.3e-21 75.8 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.6 gi|261403596|ref|YP_003247820.1| - 9e-17 60.9 23.1 3.6e-08 33.4 8.2 4.1 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403596|ref|YP_003247820.1| - 1.3e-15 57.7 35.7 4.9e-08 33.4 11.6 4.5 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403596|ref|YP_003247820.1| - 1.3e-13 51.6 24.7 0.0028 18.6 1.2 4.8 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|261403596|ref|YP_003247820.1| - 2.2e-13 50.1 31.3 8.5e-08 32.3 3.9 3.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403596|ref|YP_003247820.1| - 1.2e-12 47.1 39.6 5.6e-05 23.0 4.0 5.1 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261403596|ref|YP_003247820.1| - 1e-10 41.5 44.0 2.9e-07 30.5 10.5 4.8 5 1 0 5 5 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403596|ref|YP_003247820.1| - 5.4e-09 35.8 51.9 0.00014 21.8 4.8 5.5 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261403596|ref|YP_003247820.1| - 1.8e-07 31.6 28.6 0.00028 21.4 6.8 4.7 4 1 1 5 5 5 4 4Fe-4S dicluster domain DAO PF01266.24 gi|261403596|ref|YP_003247820.1| - 6.8e-07 29.2 0.3 0.0009 18.9 0.5 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|261403596|ref|YP_003247820.1| - 8.3e-07 29.1 0.1 1.8e-06 28.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Fer4_8 PF13183.6 gi|261403596|ref|YP_003247820.1| - 1.3e-06 28.7 32.1 0.024 15.1 0.1 4.9 4 1 1 5 5 4 4 4Fe-4S dicluster domain FAD_oxidored PF12831.7 gi|261403596|ref|YP_003247820.1| - 1.7e-06 27.7 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|261403596|ref|YP_003247820.1| - 5e-06 25.8 0.2 8.5e-06 25.1 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Fer4_15 PF13459.6 gi|261403596|ref|YP_003247820.1| - 3.2e-05 24.6 26.6 0.012 16.4 1.0 5.1 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|261403596|ref|YP_003247820.1| - 4.2e-05 24.3 22.5 0.11 13.3 0.3 4.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain HI0933_like PF03486.14 gi|261403596|ref|YP_003247820.1| - 0.00028 19.7 0.3 0.00057 18.7 0.2 1.5 1 1 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|261403596|ref|YP_003247820.1| - 0.00068 18.8 0.1 0.00098 18.3 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|261403596|ref|YP_003247820.1| - 0.00089 18.6 0.1 0.0044 16.4 0.0 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_13 PF13370.6 gi|261403596|ref|YP_003247820.1| - 0.002 18.6 32.1 0.32 11.6 1.1 4.7 4 0 0 4 4 4 3 4Fe-4S single cluster domain of Ferredoxin I Pyr_redox_3 PF13738.6 gi|261403596|ref|YP_003247820.1| - 0.0047 16.2 0.1 0.058 12.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_4 PF12800.7 gi|261403596|ref|YP_003247820.1| - 0.0063 16.9 42.4 0.0088 16.5 0.9 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Pyr_redox PF00070.27 gi|261403596|ref|YP_003247820.1| - 0.0067 17.0 0.5 0.033 14.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|261403596|ref|YP_003247820.1| - 0.025 13.8 0.1 0.043 13.1 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.17 gi|261403596|ref|YP_003247820.1| - 0.028 13.7 0.0 0.061 12.5 0.0 1.5 1 0 0 1 1 1 0 Thi4 family NAD_binding_7 PF13241.6 gi|261403596|ref|YP_003247820.1| - 0.074 13.5 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|261403596|ref|YP_003247820.1| - 0.085 11.9 0.0 1.2 8.1 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|261403596|ref|YP_003247820.1| - 0.16 10.8 0.1 2 7.2 0.1 2.1 2 0 0 2 2 2 0 Tryptophan halogenase FlpD PF02662.16 gi|261403597|ref|YP_003247821.1| - 7.8e-48 161.5 0.3 8.8e-48 161.4 0.3 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit DFP PF04127.15 gi|261403597|ref|YP_003247821.1| - 0.0023 17.8 0.0 0.0028 17.5 0.0 1.1 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein Oxidored_q6 PF01058.22 gi|261403598|ref|YP_003247822.1| - 3.1e-34 117.6 0.0 4.4e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|261403599|ref|YP_003247823.1| - 4.7e-37 128.0 0.1 5.7e-24 84.9 0.0 3.0 1 1 2 3 3 3 3 Nickel-dependent hydrogenase RRF PF01765.19 gi|261403599|ref|YP_003247823.1| - 0.0026 17.7 0.2 0.0074 16.3 0.0 1.8 2 0 0 2 2 2 1 Ribosome recycling factor NiFeSe_Hases PF00374.19 gi|261403600|ref|YP_003247824.1| - 0.047 12.6 0.0 0.05 12.5 0.0 1.0 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Fer4 PF00037.27 gi|261403601|ref|YP_003247825.1| - 2.8e-53 175.7 122.7 3.1e-07 29.9 7.9 12.2 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403601|ref|YP_003247825.1| - 3e-45 152.6 90.0 2e-10 41.1 7.7 7.5 6 1 2 8 8 8 7 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403601|ref|YP_003247825.1| - 7.1e-34 116.6 93.2 0.001 20.0 1.5 11.4 8 4 4 12 12 12 12 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|261403601|ref|YP_003247825.1| - 7.1e-32 108.2 123.8 1.3e-05 25.0 1.5 12.0 12 0 0 12 12 12 11 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403601|ref|YP_003247825.1| - 1.7e-31 108.1 98.8 7.3e-08 32.4 10.9 8.3 5 3 4 9 9 9 9 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403601|ref|YP_003247825.1| - 8.8e-31 105.8 97.4 1.1e-06 28.7 10.0 7.8 3 2 8 11 11 11 11 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403601|ref|YP_003247825.1| - 2.2e-29 101.4 98.9 1.3e-07 31.6 13.8 9.1 6 2 3 9 9 9 7 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403601|ref|YP_003247825.1| - 3.3e-22 77.2 113.3 0.0026 17.7 2.2 12.1 12 0 0 12 12 12 10 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403601|ref|YP_003247825.1| - 1.7e-16 60.4 99.8 1e-05 25.9 9.2 10.0 7 3 1 9 9 9 7 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403601|ref|YP_003247825.1| - 8.6e-11 42.2 96.9 0.025 15.1 0.7 11.2 4 2 8 13 13 13 10 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403601|ref|YP_003247825.1| - 4.1e-07 30.5 143.6 0.089 13.8 5.5 12.4 12 0 0 12 12 12 7 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261403601|ref|YP_003247825.1| - 9.9e-07 29.0 96.4 0.065 13.4 2.8 9.2 2 2 6 9 9 9 8 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403601|ref|YP_003247825.1| - 1.5e-06 28.2 116.6 0.041 14.4 4.4 11.7 11 1 1 12 12 12 8 4Fe-4S binding domain Molybdopterin PF00384.22 gi|261403602|ref|YP_003247826.1| - 6.5e-16 58.3 0.0 1.1e-10 41.1 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Sec34 PF04136.15 gi|261403603|ref|YP_003247827.1| - 0.00034 20.5 1.2 0.00034 20.5 1.2 3.6 1 1 1 3 3 3 1 Sec34-like family DUF948 PF06103.11 gi|261403603|ref|YP_003247827.1| - 0.00056 20.1 9.1 0.024 14.9 1.1 4.0 2 2 1 3 3 3 1 Bacterial protein of unknown function (DUF948) EIF_2_alpha PF07541.12 gi|261403603|ref|YP_003247827.1| - 0.001 19.2 8.9 0.0068 16.5 3.1 2.6 1 1 1 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit FlaC_arch PF05377.11 gi|261403603|ref|YP_003247827.1| - 0.036 14.4 3.1 0.036 14.4 3.1 5.0 3 2 1 4 4 4 0 Flagella accessory protein C (FlaC) DUF2397 PF09660.10 gi|261403603|ref|YP_003247827.1| - 0.043 12.7 0.2 0.078 11.9 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2397) Snapin_Pallidin PF14712.6 gi|261403603|ref|YP_003247827.1| - 0.043 14.2 1.0 0.043 14.2 1.0 3.8 3 1 1 4 4 4 0 Snapin/Pallidin Histidinol_dh PF00815.20 gi|261403603|ref|YP_003247827.1| - 0.055 12.5 2.8 0.072 12.1 2.3 1.4 1 1 0 1 1 1 0 Histidinol dehydrogenase DUF2935 PF11155.8 gi|261403603|ref|YP_003247827.1| - 0.06 13.7 1.2 1.1 9.6 0.3 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) NPV_P10 PF05531.12 gi|261403603|ref|YP_003247827.1| - 0.078 13.5 19.4 6.6 7.3 9.1 4.5 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF883 PF05957.13 gi|261403603|ref|YP_003247827.1| - 0.083 13.5 3.7 21 5.8 0.5 3.7 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) Acetyltransf_11 PF13720.6 gi|261403603|ref|YP_003247827.1| - 0.15 12.6 0.7 1.2 9.6 0.2 2.7 1 1 2 3 3 3 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF832 PF05734.11 gi|261403603|ref|YP_003247827.1| - 0.16 11.4 2.4 0.2 11.1 0.2 2.2 2 1 1 3 3 3 0 Herpesvirus protein of unknown function (DUF832) DUF4413 PF14372.6 gi|261403603|ref|YP_003247827.1| - 0.32 11.4 5.2 2.1 8.8 0.0 3.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4413) HisKA_2 PF07568.12 gi|261403603|ref|YP_003247827.1| - 0.32 11.1 4.8 1 9.5 0.1 3.3 3 1 0 3 3 3 0 Histidine kinase Utp13 PF08625.11 gi|261403603|ref|YP_003247827.1| - 0.56 10.1 4.2 0.62 10.0 2.4 2.1 2 1 0 2 2 2 0 Utp13 specific WD40 associated domain Nup54 PF13874.6 gi|261403603|ref|YP_003247827.1| - 0.7 10.0 7.2 0.39 10.8 2.4 3.0 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 Cytochrom_B562 PF07361.11 gi|261403603|ref|YP_003247827.1| - 0.81 10.4 20.4 0.082 13.6 2.8 3.9 2 1 2 4 4 4 0 Cytochrome b562 PMSI1 PF15322.6 gi|261403603|ref|YP_003247827.1| - 1.7 8.0 4.0 2.9 7.3 4.0 1.4 1 0 0 1 1 1 0 Protein missing in infertile sperm 1, putative DUF1664 PF07889.12 gi|261403603|ref|YP_003247827.1| - 2.2 8.3 22.9 0.13 12.3 5.9 3.8 1 1 1 3 3 2 0 Protein of unknown function (DUF1664) PhageMin_Tail PF10145.9 gi|261403603|ref|YP_003247827.1| - 2.5 7.9 6.2 7.7 6.3 0.2 2.4 1 1 1 2 2 2 0 Phage-related minor tail protein HMD PF03201.16 gi|261403603|ref|YP_003247827.1| - 2.7 8.3 5.2 9 6.6 0.3 3.0 1 1 0 2 2 2 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase MtrG PF04210.13 gi|261403603|ref|YP_003247827.1| - 3.7 7.5 17.3 9.2 6.2 1.1 5.3 2 2 3 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G KxDL PF10241.9 gi|261403603|ref|YP_003247827.1| - 3.9 7.8 11.7 0.34 11.2 0.3 3.4 2 1 0 3 3 2 0 Uncharacterized conserved protein YtxH PF12732.7 gi|261403603|ref|YP_003247827.1| - 4.6 7.9 24.0 1.2e+03 0.2 14.0 4.5 2 1 0 2 2 2 0 YtxH-like protein Prominin PF05478.11 gi|261403603|ref|YP_003247827.1| - 6.2 4.7 26.4 0.063 11.2 5.6 2.1 1 1 1 2 2 2 0 Prominin FliT PF05400.13 gi|261403603|ref|YP_003247827.1| - 9.3 7.1 9.8 0.88 10.4 0.7 3.6 3 2 0 3 3 3 0 Flagellar protein FliT Sigma70_ner PF04546.13 gi|261403603|ref|YP_003247827.1| - 9.4 6.1 38.2 6.4 6.6 0.1 2.7 1 1 1 3 3 3 0 Sigma-70, non-essential region CCDC158 PF15921.5 gi|261403604|ref|YP_003247828.1| - 0.005 14.8 2.1 0.0053 14.7 2.1 1.1 1 0 0 1 1 1 1 Coiled-coil domain-containing protein 158 AIP3 PF03915.13 gi|261403604|ref|YP_003247828.1| - 0.024 13.7 3.2 0.03 13.4 3.2 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 ECM11 PF15463.6 gi|261403604|ref|YP_003247828.1| - 0.028 15.0 0.4 0.05 14.2 0.4 1.4 1 0 0 1 1 1 0 Extracellular mutant protein 11 MukF_M PF17192.4 gi|261403604|ref|YP_003247828.1| - 0.029 14.1 0.6 0.074 12.8 0.1 1.7 1 1 1 2 2 2 0 MukF middle domain DUF1827 PF08860.10 gi|261403604|ref|YP_003247828.1| - 0.039 14.2 4.9 0.078 13.2 4.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) DUF745 PF05335.13 gi|261403604|ref|YP_003247828.1| - 0.04 13.6 1.8 0.055 13.2 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) GP41 PF00517.17 gi|261403604|ref|YP_003247828.1| - 0.21 11.5 8.2 0.067 13.1 2.6 2.0 1 1 1 2 2 2 0 Retroviral envelope protein DIMCO_N PF16844.5 gi|261403604|ref|YP_003247828.1| - 0.21 11.9 1.7 0.35 11.2 0.7 1.8 2 1 0 2 2 1 0 Dinitrogenase iron-molybdenum cofactor, N-terminal HMMR_N PF15905.5 gi|261403604|ref|YP_003247828.1| - 0.3 10.5 10.5 2.3 7.6 1.3 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Muted PF14942.6 gi|261403604|ref|YP_003247828.1| - 0.32 11.3 9.7 1.4 9.3 0.5 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein COG2 PF06148.11 gi|261403604|ref|YP_003247828.1| - 0.37 10.9 5.2 3.3 7.8 2.5 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2721 PF11026.8 gi|261403604|ref|YP_003247828.1| - 0.39 10.6 2.3 0.39 10.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF1664 PF07889.12 gi|261403604|ref|YP_003247828.1| - 0.39 10.8 6.4 1.2 9.2 2.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|261403604|ref|YP_003247828.1| - 0.58 10.2 8.5 0.51 10.3 2.9 2.1 1 1 1 2 2 2 0 Laminin Domain II DASH_Duo1 PF08651.10 gi|261403604|ref|YP_003247828.1| - 0.63 9.8 9.8 4 7.3 2.2 3.3 1 1 2 3 3 3 0 DASH complex subunit Duo1 Mt_ATP-synt_D PF05873.12 gi|261403604|ref|YP_003247828.1| - 0.66 9.8 4.3 1.3 8.9 1.0 2.1 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) BORCS7 PF16088.5 gi|261403604|ref|YP_003247828.1| - 1.2 9.5 6.6 2.4 8.5 0.2 2.8 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 7 DUF16 PF01519.16 gi|261403604|ref|YP_003247828.1| - 1.8 9.1 6.6 3.9 8.0 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF848 PF05852.11 gi|261403604|ref|YP_003247828.1| - 9.9 6.3 7.6 16 5.5 2.5 2.3 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) Spc7 PF08317.11 gi|261403605|ref|YP_003247829.1| - 7.7e-05 21.7 9.4 9.7e-05 21.4 6.8 2.0 1 1 1 2 2 2 1 Spc7 kinetochore protein DASH_Duo1 PF08651.10 gi|261403605|ref|YP_003247829.1| - 0.01 15.6 8.9 0.38 10.6 0.0 3.5 1 1 1 2 2 2 0 DASH complex subunit Duo1 DUF948 PF06103.11 gi|261403605|ref|YP_003247829.1| - 0.012 15.9 7.0 0.067 13.5 2.7 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) SLATT_5 PF18160.1 gi|261403605|ref|YP_003247829.1| - 0.014 14.7 0.4 0.014 14.7 0.4 1.9 2 1 1 3 3 3 0 SMODS and SLOG-associating 2TM effector domain family 5 Goodbye PF17109.5 gi|261403605|ref|YP_003247829.1| - 0.02 15.3 1.0 0.9 10.0 0.6 2.2 1 1 0 2 2 2 0 fungal STAND N-terminal Goodbye domain Lebercilin PF15619.6 gi|261403605|ref|YP_003247829.1| - 0.02 14.5 8.9 0.021 14.5 8.0 1.4 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease APG17 PF04108.12 gi|261403605|ref|YP_003247829.1| - 0.021 14.0 10.0 0.026 13.6 10.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 TolA_bind_tri PF16331.5 gi|261403605|ref|YP_003247829.1| - 0.024 14.7 1.8 1.2 9.3 0.1 3.1 3 1 0 3 3 3 0 TolA binding protein trimerisation DUF724 PF05266.14 gi|261403605|ref|YP_003247829.1| - 0.036 13.9 10.3 0.67 9.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) CheZ PF04344.13 gi|261403605|ref|YP_003247829.1| - 0.043 13.7 5.4 0.11 12.4 2.9 2.0 1 1 2 3 3 3 0 Chemotaxis phosphatase, CheZ FliG_N PF14842.6 gi|261403605|ref|YP_003247829.1| - 0.062 13.8 2.1 0.71 10.4 0.3 2.9 1 1 1 3 3 3 0 FliG N-terminal domain MCPsignal PF00015.21 gi|261403605|ref|YP_003247829.1| - 0.072 12.9 2.5 0.78 9.5 0.5 2.6 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Sulfatase_C PF14707.6 gi|261403605|ref|YP_003247829.1| - 0.11 13.3 0.5 11 6.8 0.1 2.5 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase Tweety PF04906.13 gi|261403605|ref|YP_003247829.1| - 0.16 10.6 4.1 0.11 11.2 1.1 1.8 1 1 1 2 2 2 0 Tweety LXG PF04740.12 gi|261403605|ref|YP_003247829.1| - 0.16 11.6 9.8 0.49 10.1 0.1 2.7 1 1 1 2 2 2 0 LXG domain of WXG superfamily CENP-F_leu_zip PF10473.9 gi|261403605|ref|YP_003247829.1| - 0.2 11.7 16.0 1.6 8.8 2.1 3.2 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 zf-C4H2 PF10146.9 gi|261403605|ref|YP_003247829.1| - 0.22 11.8 11.4 0.15 12.3 9.3 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein Allexi_40kDa PF05549.11 gi|261403605|ref|YP_003247829.1| - 0.26 10.8 10.8 0.12 11.8 7.8 1.8 2 0 0 2 2 2 0 Allexivirus 40kDa protein Syntaxin-6_N PF09177.11 gi|261403605|ref|YP_003247829.1| - 0.38 11.3 8.2 2.2 8.9 6.5 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Laminin_II PF06009.12 gi|261403605|ref|YP_003247829.1| - 0.49 10.4 13.0 8.8 6.3 6.2 3.0 1 1 2 3 3 3 0 Laminin Domain II DUF148 PF02520.17 gi|261403605|ref|YP_003247829.1| - 0.54 10.4 9.4 0.72 10.0 4.4 2.7 1 1 2 3 3 3 0 Domain of unknown function DUF148 Noelin-1 PF12308.8 gi|261403605|ref|YP_003247829.1| - 0.71 9.9 6.3 0.98 9.4 1.4 2.5 2 1 1 3 3 3 0 Neurogenesis glycoprotein TMPIT PF07851.13 gi|261403605|ref|YP_003247829.1| - 0.75 9.0 6.1 1.4 8.1 4.2 1.8 1 1 1 2 2 2 0 TMPIT-like protein PCRF PF03462.18 gi|261403605|ref|YP_003247829.1| - 0.75 9.6 8.0 3.1 7.6 6.6 2.1 1 1 1 2 2 2 0 PCRF domain RasGAP_C PF03836.15 gi|261403605|ref|YP_003247829.1| - 1.1 9.4 10.7 2.7 8.2 4.0 2.5 1 1 1 2 2 2 0 RasGAP C-terminus DUF1664 PF07889.12 gi|261403605|ref|YP_003247829.1| - 1.2 9.2 8.6 1.3 9.1 2.6 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF4795 PF16043.5 gi|261403605|ref|YP_003247829.1| - 1.4 8.4 16.1 0.35 10.5 8.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) FlaC_arch PF05377.11 gi|261403605|ref|YP_003247829.1| - 2.2 8.7 16.8 1.5 9.3 1.2 3.9 2 2 1 3 3 3 0 Flagella accessory protein C (FlaC) UPF0184 PF03670.13 gi|261403605|ref|YP_003247829.1| - 2.3 8.7 7.2 0.69 10.3 0.6 2.6 2 2 0 2 2 2 0 Uncharacterised protein family (UPF0184) Snapin_Pallidin PF14712.6 gi|261403605|ref|YP_003247829.1| - 2.4 8.6 12.2 34 4.9 7.7 3.1 1 1 1 2 2 2 0 Snapin/Pallidin Fib_alpha PF08702.10 gi|261403605|ref|YP_003247829.1| - 2.5 8.3 12.8 0.41 10.8 7.0 2.4 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family PI3K_P85_iSH2 PF16454.5 gi|261403605|ref|YP_003247829.1| - 3.6 7.1 12.2 1.6 8.3 5.0 3.0 1 1 1 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Fzo_mitofusin PF04799.13 gi|261403605|ref|YP_003247829.1| - 5.9 6.4 8.2 0.47 10.0 1.4 2.4 2 1 1 3 3 3 0 fzo-like conserved region MCPsignal PF00015.21 gi|261403606|ref|YP_003247830.1| - 5.4e-36 124.0 46.2 6.7e-33 113.9 21.1 5.4 1 1 5 6 6 6 4 Methyl-accepting chemotaxis protein (MCP) signalling domain Collagen_mid PF15984.5 gi|261403606|ref|YP_003247830.1| - 4.9e-05 23.2 2.0 0.0032 17.2 0.3 2.3 1 1 2 3 3 3 2 Bacterial collagen, middle region DUF948 PF06103.11 gi|261403606|ref|YP_003247830.1| - 6.2e-05 23.2 35.9 0.21 11.9 2.9 6.4 2 2 4 6 6 6 3 Bacterial protein of unknown function (DUF948) WXG100 PF06013.12 gi|261403606|ref|YP_003247830.1| - 0.00092 19.4 16.5 5.7 7.2 2.7 6.6 5 2 1 6 6 6 0 Proteins of 100 residues with WXG Syntaxin-6_N PF09177.11 gi|261403606|ref|YP_003247830.1| - 0.0017 18.9 34.5 0.015 15.8 4.7 5.4 1 1 4 5 5 5 2 Syntaxin 6, N-terminal HAMP PF00672.25 gi|261403606|ref|YP_003247830.1| - 0.0053 17.1 2.8 7.1 7.1 0.0 5.2 5 1 0 5 5 5 0 HAMP domain ApoLp-III PF07464.11 gi|261403606|ref|YP_003247830.1| - 0.008 16.3 39.0 0.23 11.6 4.5 5.2 3 2 1 4 4 4 2 Apolipophorin-III precursor (apoLp-III) Fib_alpha PF08702.10 gi|261403606|ref|YP_003247830.1| - 0.0084 16.3 33.9 0.13 12.5 9.0 5.0 3 2 2 5 5 5 1 Fibrinogen alpha/beta chain family DUF1192 PF06698.11 gi|261403606|ref|YP_003247830.1| - 0.012 15.7 1.3 0.012 15.7 1.3 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) BLOC1_2 PF10046.9 gi|261403606|ref|YP_003247830.1| - 0.012 15.9 35.6 1.2 9.5 2.7 5.7 4 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FUSC PF04632.12 gi|261403606|ref|YP_003247830.1| - 0.033 12.7 3.9 1.9 6.9 2.4 2.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family Mce4_CUP1 PF11887.8 gi|261403606|ref|YP_003247830.1| - 0.05 13.0 11.3 2.2 7.7 1.7 3.7 1 1 1 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative GCP_N_terminal PF17681.1 gi|261403606|ref|YP_003247830.1| - 0.052 13.2 1.9 0.17 11.5 0.4 2.1 2 0 0 2 2 2 0 Gamma tubulin complex component N-terminal PilJ PF13675.6 gi|261403606|ref|YP_003247830.1| - 0.058 13.4 7.9 9.8 6.2 0.0 4.4 1 1 0 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term CheZ PF04344.13 gi|261403606|ref|YP_003247830.1| - 0.076 12.9 22.1 0.047 13.6 1.2 4.2 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ NPV_P10 PF05531.12 gi|261403606|ref|YP_003247830.1| - 0.12 12.8 35.4 0.46 11.0 1.4 6.3 3 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Erf4 PF10256.9 gi|261403606|ref|YP_003247830.1| - 0.15 12.1 4.7 7.8 6.6 0.1 4.6 4 2 1 5 5 5 0 Golgin subfamily A member 7/ERF4 family Serine_rich PF08824.10 gi|261403606|ref|YP_003247830.1| - 0.16 11.9 17.6 5.6 6.9 6.4 4.7 3 2 1 4 4 4 0 Serine rich protein interaction domain DUF1664 PF07889.12 gi|261403606|ref|YP_003247830.1| - 0.29 11.2 35.8 5.5 7.0 2.5 5.5 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|261403606|ref|YP_003247830.1| - 0.41 10.5 25.2 1.1 9.1 0.9 4.8 4 2 1 5 5 5 0 Sec34-like family Spo0A_C PF08769.11 gi|261403606|ref|YP_003247830.1| - 0.44 10.7 6.1 5 7.3 0.2 3.7 3 1 0 3 3 3 0 Sporulation initiation factor Spo0A C terminal SKA2 PF16740.5 gi|261403606|ref|YP_003247830.1| - 0.44 10.4 24.2 0.088 12.6 6.3 5.2 3 2 2 6 6 6 0 Spindle and kinetochore-associated protein 2 Sec20 PF03908.13 gi|261403606|ref|YP_003247830.1| - 0.5 10.3 21.1 0.37 10.8 0.5 5.8 2 2 5 7 7 7 0 Sec20 Wzy_C PF04932.15 gi|261403606|ref|YP_003247830.1| - 0.58 9.8 2.7 1.5 8.4 2.7 1.6 1 1 0 1 1 1 0 O-Antigen ligase BORCS8 PF10167.9 gi|261403606|ref|YP_003247830.1| - 0.63 10.0 20.1 0.93 9.4 0.4 5.2 3 1 3 6 6 6 0 BLOC-1-related complex sub-unit 8 COG5 PF10392.9 gi|261403606|ref|YP_003247830.1| - 0.64 10.2 20.7 0.18 12.0 2.1 4.0 3 1 1 4 4 4 0 Golgi transport complex subunit 5 PHM7_cyt PF14703.6 gi|261403606|ref|YP_003247830.1| - 0.85 9.8 19.6 0.61 10.3 2.5 4.1 1 1 2 3 3 3 0 Cytosolic domain of 10TM putative phosphate transporter I_LWEQ PF01608.17 gi|261403606|ref|YP_003247830.1| - 1.2 9.3 30.6 0.26 11.5 1.8 4.3 1 1 3 4 4 4 0 I/LWEQ domain DASH_Dam1 PF08653.10 gi|261403606|ref|YP_003247830.1| - 1.5 8.7 7.7 39 4.2 0.0 5.2 5 1 1 6 6 5 0 DASH complex subunit Dam1 TMP_2 PF06791.13 gi|261403606|ref|YP_003247830.1| - 1.5 8.4 17.2 5.5 6.6 3.0 3.4 1 1 1 3 3 3 0 Prophage tail length tape measure protein DUF2779 PF11074.8 gi|261403606|ref|YP_003247830.1| - 2.4 8.7 7.5 5.7 7.4 0.1 3.6 2 1 0 3 3 3 0 Domain of unknown function(DUF2779) DUF489 PF04356.12 gi|261403606|ref|YP_003247830.1| - 3.3 7.7 10.8 9.4 6.2 1.4 3.4 1 1 2 4 4 4 0 Protein of unknown function (DUF489) ACP_PD PF04336.12 gi|261403606|ref|YP_003247830.1| - 3.8 8.0 4.9 59 4.1 0.1 4.0 3 1 1 4 4 4 0 Acyl carrier protein phosphodiesterase Leu_zip PF15294.6 gi|261403606|ref|YP_003247830.1| - 4.2 6.8 33.2 4.8 6.6 3.8 3.4 2 2 1 3 3 3 0 Leucine zipper UPF0242 PF06785.11 gi|261403606|ref|YP_003247830.1| - 4.4 7.4 32.3 1.6e+02 2.3 23.0 4.1 1 1 1 2 2 1 0 Uncharacterised protein family (UPF0242) N-terminus DASH_Dad1 PF08649.10 gi|261403606|ref|YP_003247830.1| - 5.2 7.3 15.5 9.4 6.5 0.1 5.9 6 1 1 7 7 6 0 DASH complex subunit Dad1 DASH_Duo1 PF08651.10 gi|261403606|ref|YP_003247830.1| - 5.6 6.8 26.2 9.7 6.1 0.5 7.1 5 2 3 8 8 8 0 DASH complex subunit Duo1 AATF-Che1 PF13339.6 gi|261403606|ref|YP_003247830.1| - 8.4 7.1 20.4 26 5.5 1.4 4.5 1 1 3 4 4 4 0 Apoptosis antagonizing transcription factor MutS_III PF05192.18 gi|261403606|ref|YP_003247830.1| - 9.1 6.5 28.0 6.1e+03 -2.8 26.8 3.1 2 1 0 2 2 0 0 MutS domain III YscO PF07321.12 gi|261403606|ref|YP_003247830.1| - 9.1 6.2 27.9 2.1 8.3 8.7 4.1 2 1 1 4 4 4 0 Type III secretion protein YscO Laminin_II PF06009.12 gi|261403606|ref|YP_003247830.1| - 10 6.2 39.8 7.4 6.6 9.3 5.2 2 2 3 5 5 5 0 Laminin Domain II CheF-arch PF04283.12 gi|261403607|ref|YP_003247831.1| - 3.7e-53 180.5 0.4 5.4e-53 179.9 0.4 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Spt5-NGN PF03439.13 gi|261403607|ref|YP_003247831.1| - 0.0091 15.9 1.6 0.017 15.0 0.4 2.1 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section PCI PF01399.27 gi|261403607|ref|YP_003247831.1| - 0.029 14.9 0.2 0.14 12.7 0.0 2.2 2 1 1 3 3 3 0 PCI domain DUF5107 PF17128.4 gi|261403607|ref|YP_003247831.1| - 0.082 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5107) PSD3 PF07626.11 gi|261403607|ref|YP_003247831.1| - 0.1 13.1 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1587) TFIIE_alpha PF02002.17 gi|261403607|ref|YP_003247831.1| - 1.3 8.9 7.1 0.39 10.6 0.3 2.8 3 0 0 3 3 3 0 TFIIE alpha subunit Response_reg PF00072.24 gi|261403608|ref|YP_003247832.1| - 1.7e-31 108.7 0.7 1.9e-31 108.5 0.7 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PA PF02225.22 gi|261403608|ref|YP_003247832.1| - 0.025 14.6 0.1 0.072 13.1 0.2 1.8 1 1 1 2 2 2 0 PA domain B12-binding PF02310.19 gi|261403608|ref|YP_003247832.1| - 0.029 14.4 0.1 0.047 13.7 0.1 1.4 1 1 0 1 1 1 0 B12 binding domain G3P_antiterm PF04309.12 gi|261403608|ref|YP_003247832.1| - 0.044 13.2 2.0 0.063 12.7 1.7 1.4 1 1 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator DUF3798 PF12683.7 gi|261403608|ref|YP_003247832.1| - 0.054 12.9 1.0 0.18 11.2 1.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3798) FAS_meander PF17951.1 gi|261403608|ref|YP_003247832.1| - 0.1 12.4 0.1 0.12 12.2 0.1 1.3 1 1 0 1 1 1 0 Fatty acid synthase meander beta sheet domain TBK1_CCD1 PF18394.1 gi|261403608|ref|YP_003247832.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 NapD PF03927.13 gi|261403608|ref|YP_003247832.1| - 0.12 12.5 0.5 0.94 9.6 0.0 2.3 1 1 1 2 2 2 0 NapD protein CheX PF13690.6 gi|261403609|ref|YP_003247833.1| - 3.4e-11 43.2 0.4 6.1e-11 42.3 0.4 1.4 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.12 gi|261403609|ref|YP_003247833.1| - 1.1e-06 28.4 1.6 2.5e-06 27.3 1.3 1.8 2 0 0 2 2 2 1 CheC-like family CM_1 PF07736.11 gi|261403609|ref|YP_003247833.1| - 0.15 12.5 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 Chorismate mutase type I CheC PF04509.12 gi|261403610|ref|YP_003247834.1| - 1.8e-09 37.3 1.1 1.8e-09 37.3 1.1 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|261403610|ref|YP_003247834.1| - 0.00054 20.1 0.5 0.0013 18.9 0.1 1.9 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX HIGH_NTase1_ass PF16581.5 gi|261403611|ref|YP_003247835.1| - 3.3e-81 272.1 8.2 3.3e-81 272.1 8.2 1.4 2 0 0 2 2 2 1 Cytidyltransferase-related C-terminal region HIGH_NTase1 PF05636.11 gi|261403611|ref|YP_003247835.1| - 1.2e-18 67.6 3.9 2.6e-13 50.0 0.0 2.8 3 1 0 3 3 3 2 HIGH Nucleotidyl Transferase Citrate_ly_lig PF08218.11 gi|261403611|ref|YP_003247835.1| - 0.00047 19.9 0.2 0.042 13.5 0.0 3.0 2 2 1 3 3 3 1 Citrate lyase ligase C-terminal domain CTP_transf_like PF01467.26 gi|261403611|ref|YP_003247835.1| - 0.022 14.9 0.1 0.5 10.5 0.0 2.8 2 1 0 2 2 2 0 Cytidylyltransferase-like CRISPR_Cas9_WED PF18061.1 gi|261403611|ref|YP_003247835.1| - 0.056 13.5 3.8 0.05 13.7 1.6 2.0 2 0 0 2 2 2 0 CRISPR-Cas9 WED domain DUF655 PF04919.12 gi|261403611|ref|YP_003247835.1| - 0.073 13.0 2.6 3.2 7.7 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF655) ATP-sulfurylase PF01747.17 gi|261403611|ref|YP_003247835.1| - 0.19 11.2 0.0 1.9 7.9 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase PIN_5 PF08745.11 gi|261403612|ref|YP_003247836.1| - 2.5e-90 301.4 0.1 2.9e-90 301.2 0.1 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease SRI PF08236.11 gi|261403612|ref|YP_003247836.1| - 0.0017 18.5 0.1 0.6 10.3 0.0 2.4 2 0 0 2 2 2 2 SRI (Set2 Rpb1 interacting) domain Collectrin PF16959.5 gi|261403612|ref|YP_003247836.1| - 0.1 12.3 0.0 0.39 10.5 0.0 1.7 1 1 0 1 1 1 0 Renal amino acid transporter DUF356 PF04009.12 gi|261403613|ref|YP_003247837.1| - 3e-38 130.4 0.7 3.4e-38 130.1 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF356) DUF1894 PF08979.11 gi|261403613|ref|YP_003247837.1| - 0.08 13.3 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1894) DUF848 PF05852.11 gi|261403614|ref|YP_003247838.1| - 1.3 9.1 8.5 0.78 9.8 3.0 2.1 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) tRNA-synt_1 PF00133.22 gi|261403615|ref|YP_003247839.1| - 1.2e-191 638.1 15.9 1.2e-191 638.1 15.9 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|261403615|ref|YP_003247839.1| - 2.1e-27 95.9 6.0 2.3e-10 39.8 0.1 4.8 4 1 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|261403615|ref|YP_003247839.1| - 1.2e-24 87.0 2.3 1.2e-24 87.0 2.3 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|261403615|ref|YP_003247839.1| - 3.8e-09 36.3 0.0 3.4e-07 29.9 0.0 2.8 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|261403615|ref|YP_003247839.1| - 1.2e-08 34.7 3.0 5.3e-08 32.6 0.6 2.6 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|261403615|ref|YP_003247839.1| - 7.7e-06 25.1 0.0 0.00047 19.2 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf_UBZ PF18439.1 gi|261403615|ref|YP_003247839.1| - 0.11 12.1 0.5 5.2 6.7 0.0 2.6 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2341 PF10102.9 gi|261403616|ref|YP_003247840.1| - 1.3e-17 64.1 4.2 5e-17 62.3 2.1 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF2341) DUF3898 PF13037.6 gi|261403617|ref|YP_003247841.1| - 0.078 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3898) DUF2341 PF10102.9 gi|261403618|ref|YP_003247842.1| - 7e-31 106.7 2.0 2.9e-30 104.7 2.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Class_IIIsignal PF04021.12 gi|261403620|ref|YP_003247844.1| - 5.4e-09 35.7 1.5 7.4e-09 35.3 1.5 1.2 1 0 0 1 1 1 1 Class III signal peptide Ac76 PF05814.11 gi|261403620|ref|YP_003247844.1| - 0.045 13.8 0.2 0.052 13.6 0.2 1.1 1 0 0 1 1 1 0 Orf76 (Ac76) PKD PF00801.20 gi|261403621|ref|YP_003247845.1| - 2.1e-62 206.9 43.8 7.9e-17 60.9 0.4 9.6 9 0 0 9 9 9 8 PKD domain DUF4625 PF15418.6 gi|261403621|ref|YP_003247845.1| - 0.17 12.1 3.1 32 4.8 0.0 4.5 4 1 0 4 4 4 0 Domain of unknown function (DUF4625) TcfC PF16967.5 gi|261403621|ref|YP_003247845.1| - 3 7.4 9.4 18 4.9 0.0 5.2 6 0 0 6 6 6 0 E-set like domain Class_IIIsignal PF04021.12 gi|261403623|ref|YP_003247847.1| - 5.4e-07 29.4 5.6 1e-06 28.5 5.6 1.5 1 0 0 1 1 1 1 Class III signal peptide Class_IIIsignal PF04021.12 gi|261403624|ref|YP_003247848.1| - 5.4e-07 29.4 0.8 1e-06 28.5 0.8 1.5 1 0 0 1 1 1 1 Class III signal peptide NAD_binding_8 PF13450.6 gi|261403625|ref|YP_003247849.1| - 0.0029 17.8 0.0 0.012 15.8 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DUF2124 PF09897.9 gi|261403626|ref|YP_003247850.1| - 1.4e-47 161.2 0.2 1.5e-47 161.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2124) GATase PF00117.28 gi|261403626|ref|YP_003247850.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I DMRL_synthase PF00885.19 gi|261403627|ref|YP_003247851.1| - 1.1e-13 51.2 0.1 1.3e-13 51.0 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase AFOR_N PF02730.15 gi|261403628|ref|YP_003247852.1| - 5.8e-24 85.0 0.0 9.7e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|261403628|ref|YP_003247852.1| - 1.4e-19 70.4 0.0 5.4e-19 68.5 0.0 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 40S_S4_C PF16121.5 gi|261403628|ref|YP_003247852.1| - 0.11 12.1 0.7 0.59 9.8 0.0 2.4 3 0 0 3 3 3 0 40S ribosomal protein S4 C-terminus SBP_bac_11 PF13531.6 gi|261403629|ref|YP_003247853.1| - 3.1e-30 105.6 0.0 4.2e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|261403629|ref|YP_003247853.1| - 5.1e-17 62.8 0.5 7.2e-17 62.3 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein AP_endonuc_2 PF01261.24 gi|261403630|ref|YP_003247854.1| - 8.2e-24 84.2 0.0 1.4e-23 83.4 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel JmjN PF02375.17 gi|261403630|ref|YP_003247854.1| - 0.0012 18.8 0.6 0.014 15.3 0.2 2.5 2 0 0 2 2 2 1 jmjN domain DUF366 PF04017.12 gi|261403631|ref|YP_003247855.1| - 7.1e-70 234.2 7.3 8e-70 234.0 7.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF366) DnaJ_C PF01556.18 gi|261403631|ref|YP_003247855.1| - 0.058 13.5 1.1 0.086 12.9 1.1 1.4 1 1 0 1 1 1 0 DnaJ C terminal domain TPP_enzyme_N PF02776.18 gi|261403632|ref|YP_003247856.1| - 3.4e-10 39.8 0.0 3.4e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain POR_N PF01855.19 gi|261403632|ref|YP_003247856.1| - 0.019 14.7 0.0 0.049 13.4 0.0 1.5 1 1 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ComA PF02679.15 gi|261403633|ref|YP_003247857.1| - 7.5e-90 300.6 0.0 9e-90 300.4 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Radical_SAM PF04055.21 gi|261403634|ref|YP_003247858.1| - 1e-13 52.0 1.9 3.8e-13 50.2 0.7 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|261403634|ref|YP_003247858.1| - 2.2e-08 34.3 0.2 6.1e-08 32.8 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|261403634|ref|YP_003247858.1| - 9.4e-07 29.2 1.5 2.6e-06 27.8 0.5 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF438 PF04282.13 gi|261403634|ref|YP_003247858.1| - 0.044 13.7 0.8 0.15 12.1 0.1 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF438) Sigma_reg_C PF13791.6 gi|261403634|ref|YP_003247858.1| - 0.11 12.7 0.0 0.34 11.1 0.0 1.8 1 0 0 1 1 1 0 Sigma factor regulator C-terminal CbiD PF01888.17 gi|261403635|ref|YP_003247859.1| - 1.8e-97 325.6 3.5 2.6e-97 325.0 3.5 1.2 1 0 0 1 1 1 1 CbiD UPF0093 PF03653.13 gi|261403636|ref|YP_003247860.1| - 0.011 16.0 0.4 0.014 15.6 0.4 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0093) ABC2_membrane_2 PF12679.7 gi|261403636|ref|YP_003247860.1| - 0.13 11.5 0.8 0.32 10.2 0.8 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2759 PF10958.8 gi|261403636|ref|YP_003247860.1| - 2.6 7.8 9.1 3 7.6 1.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2759) Radical_SAM PF04055.21 gi|261403638|ref|YP_003247862.1| - 1.5e-15 58.0 0.1 3e-15 57.0 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily GTP_EFTU PF00009.27 gi|261403639|ref|YP_003247863.1| - 1.1e-65 220.9 0.1 1.8e-65 220.1 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|261403639|ref|YP_003247863.1| - 3.4e-31 107.5 0.1 9.1e-31 106.1 0.1 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|261403639|ref|YP_003247863.1| - 2.7e-27 94.6 0.0 8.8e-27 93.0 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|261403639|ref|YP_003247863.1| - 2.4e-23 82.0 0.7 6e-23 80.7 0.4 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|261403639|ref|YP_003247863.1| - 7.5e-17 61.5 0.2 4.5e-16 59.0 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|261403639|ref|YP_003247863.1| - 0.024 14.7 0.0 0.057 13.5 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase TRADD_N PF09034.10 gi|261403639|ref|YP_003247863.1| - 0.093 12.8 0.1 0.31 11.1 0.1 1.8 2 0 0 2 2 2 0 TRADD, N-terminal domain DUF4347 PF14252.6 gi|261403639|ref|YP_003247863.1| - 0.16 11.8 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4347) Ribosomal_S7 PF00177.21 gi|261403640|ref|YP_003247864.1| - 1.7e-39 134.9 6.2 2e-39 134.6 6.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.25 gi|261403641|ref|YP_003247865.1| - 3e-47 158.9 1.1 3.6e-47 158.7 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_5 PF13184.6 gi|261403642|ref|YP_003247866.1| - 1e-16 60.7 3.0 3.3e-16 59.1 0.3 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 gi|261403642|ref|YP_003247866.1| - 1.2e-13 50.7 7.1 2.6e-13 49.6 0.2 2.2 1 1 1 2 2 2 1 KH domain KH_1 PF00013.29 gi|261403642|ref|YP_003247866.1| - 6.8e-05 22.6 2.4 0.0012 18.6 0.1 2.6 2 1 0 2 2 2 1 KH domain DUF5362 PF17319.2 gi|261403642|ref|YP_003247866.1| - 0.13 12.1 0.1 0.24 11.2 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5362) Ribosomal_L7Ae PF01248.26 gi|261403643|ref|YP_003247867.1| - 4.7e-22 77.5 0.1 5.3e-22 77.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|261403644|ref|YP_003247868.1| - 7.8e-52 176.3 3.7 3.1e-40 138.3 2.6 2.5 2 0 0 2 2 2 2 RNA polymerase Rpb1, domain 5 Intein_splicing PF14890.6 gi|261403644|ref|YP_003247868.1| - 3.7e-24 85.2 1.4 3.7e-24 85.2 1.4 2.3 2 0 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|261403644|ref|YP_003247868.1| - 9.5e-11 41.9 1.1 4.4e-10 39.8 0.2 2.7 2 0 0 2 2 2 1 LAGLIDADG-like domain DUF4860 PF16152.5 gi|261403644|ref|YP_003247868.1| - 0.0033 17.3 0.6 0.014 15.3 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4860) ACR_tran PF00873.19 gi|261403644|ref|YP_003247868.1| - 0.014 13.1 0.1 0.019 12.6 0.1 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family RNA_pol_Rpb1_7 PF04990.12 gi|261403644|ref|YP_003247868.1| - 0.018 15.1 0.1 0.099 12.6 0.1 2.4 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 7 DUF4145 PF13643.6 gi|261403644|ref|YP_003247868.1| - 0.064 13.4 0.1 10 6.3 0.0 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4145) LIX1 PF14954.6 gi|261403644|ref|YP_003247868.1| - 0.072 12.4 0.0 0.23 10.7 0.0 1.7 2 0 0 2 2 2 0 Limb expression 1 3HCDH_N PF02737.18 gi|261403644|ref|YP_003247868.1| - 0.13 12.1 1.0 0.45 10.4 1.0 1.9 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Met_gamma_lyase PF06838.11 gi|261403644|ref|YP_003247868.1| - 0.7 8.3 5.5 0.47 8.9 0.1 2.7 2 1 1 3 3 3 0 Methionine gamma-lyase RNA_pol_Rpb1_1 PF04997.12 gi|261403645|ref|YP_003247869.1| - 3e-108 361.9 0.0 9.5e-108 360.2 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|261403645|ref|YP_003247869.1| - 3.4e-65 219.3 0.4 1.7e-47 161.7 0.1 3.3 3 0 0 3 3 3 2 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|261403645|ref|YP_003247869.1| - 6.2e-36 123.7 1.6 1.8e-34 119.0 0.0 3.2 3 0 0 3 3 3 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|261403645|ref|YP_003247869.1| - 2.7e-33 114.1 0.0 8e-33 112.6 0.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|261403645|ref|YP_003247869.1| - 2.9e-26 92.5 0.0 2.9e-26 92.5 0.0 2.1 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 5 Intein_splicing PF14890.6 gi|261403645|ref|YP_003247869.1| - 2.1e-16 60.1 0.0 4.1e-15 55.9 0.0 3.0 4 1 0 4 4 3 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|261403645|ref|YP_003247869.1| - 6.2e-05 23.2 1.2 0.00026 21.2 0.6 2.5 2 0 0 2 2 2 1 LAGLIDADG-like domain MqsA_antitoxin PF15731.5 gi|261403645|ref|YP_003247869.1| - 0.014 15.5 1.2 3.6 7.7 0.1 3.8 3 1 1 4 4 4 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA KIX PF02172.16 gi|261403645|ref|YP_003247869.1| - 0.018 15.3 0.5 0.075 13.3 0.0 2.3 2 0 0 2 2 2 0 KIX domain zf-ISL3 PF14690.6 gi|261403645|ref|YP_003247869.1| - 0.072 13.8 1.0 23 5.7 0.1 2.9 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HMA PF00403.26 gi|261403645|ref|YP_003247869.1| - 0.12 12.8 3.3 0.38 11.2 0.0 3.5 3 0 0 3 3 3 0 Heavy-metal-associated domain DUF3552 PF12072.8 gi|261403645|ref|YP_003247869.1| - 0.12 11.7 2.2 0.31 10.4 2.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) zf-RING_7 PF02591.15 gi|261403645|ref|YP_003247869.1| - 1.5 9.0 3.6 29 5.0 0.1 2.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|261403645|ref|YP_003247869.1| - 5.2 7.3 9.8 4.1 7.6 0.1 3.7 4 0 0 4 4 3 0 Zinc ribbon domain DZR PF12773.7 gi|261403645|ref|YP_003247869.1| - 8.1 6.6 10.2 2.4 8.2 0.2 3.0 3 0 0 3 3 3 0 Double zinc ribbon RNA_pol_Rpb2_6 PF00562.28 gi|261403646|ref|YP_003247870.1| - 3e-133 444.7 0.0 4e-133 444.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|261403646|ref|YP_003247870.1| - 4.3e-28 97.5 0.0 8.2e-28 96.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|261403646|ref|YP_003247870.1| - 1.2e-22 80.0 0.2 2.8e-22 78.8 0.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|261403646|ref|YP_003247870.1| - 2.7e-12 47.1 4.9 3.4e-12 46.7 2.6 2.6 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|261403646|ref|YP_003247870.1| - 0.0015 18.8 0.1 0.0062 16.8 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase beta subunit external 1 domain PAS_9 PF13426.7 gi|261403646|ref|YP_003247870.1| - 0.13 12.5 0.0 0.76 10.1 0.0 2.3 2 0 0 2 2 2 0 PAS domain RecR PF02132.15 gi|261403646|ref|YP_003247870.1| - 0.87 9.2 2.8 1.1 8.9 0.0 2.1 1 1 0 1 1 1 0 RecR protein RNA_pol_Rpb2_1 PF04563.15 gi|261403647|ref|YP_003247871.1| - 5.2e-56 189.4 0.0 6.3e-56 189.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|261403647|ref|YP_003247871.1| - 2.4e-27 95.8 0.0 3.6e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|261403647|ref|YP_003247871.1| - 4.5e-26 90.8 0.0 8.8e-26 89.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|261403648|ref|YP_003247872.1| - 9.2e-32 108.7 1.2 1e-31 108.6 1.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|261403648|ref|YP_003247872.1| - 0.045 14.0 0.1 2 8.7 0.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) MinC_N PF05209.13 gi|261403648|ref|YP_003247872.1| - 0.045 13.7 0.1 0.051 13.5 0.1 1.2 1 0 0 1 1 1 0 Septum formation inhibitor MinC, N-terminal domain MFS_1 PF07690.16 gi|261403649|ref|YP_003247873.1| - 4.1e-58 197.0 68.6 3e-52 177.7 44.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|261403649|ref|YP_003247873.1| - 1.1e-09 37.7 18.8 1.1e-09 37.7 18.8 3.2 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|261403649|ref|YP_003247873.1| - 2.9e-09 36.3 40.4 6.3e-07 28.6 17.1 2.1 1 1 1 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|261403649|ref|YP_003247873.1| - 3.1e-05 22.6 17.6 0.00018 20.1 2.1 2.0 2 0 0 2 2 2 2 Transmembrane secretion effector PUCC PF03209.15 gi|261403649|ref|YP_003247873.1| - 0.0021 17.2 22.9 0.022 13.8 8.4 2.5 2 1 0 2 2 2 2 PUCC protein MFS_2 PF13347.6 gi|261403649|ref|YP_003247873.1| - 5.1 5.5 51.5 0.49 8.9 1.7 3.1 1 1 1 3 3 3 0 MFS/sugar transport protein His_biosynth PF00977.21 gi|261403650|ref|YP_003247874.1| - 2.5e-28 99.1 4.2 7.8e-28 97.5 4.2 1.7 1 1 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.14 gi|261403650|ref|YP_003247874.1| - 2e-06 27.3 0.5 2.4e-05 23.8 0.2 2.2 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|261403650|ref|YP_003247874.1| - 0.0006 19.1 0.1 0.26 10.4 0.0 2.9 2 1 1 3 3 3 2 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|261403650|ref|YP_003247874.1| - 0.0011 18.0 0.2 0.0019 17.3 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|261403650|ref|YP_003247874.1| - 0.0016 17.7 2.4 0.072 12.3 0.0 2.2 1 1 1 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase PRAI PF00697.22 gi|261403650|ref|YP_003247874.1| - 0.061 13.1 0.2 0.088 12.6 0.2 1.5 1 1 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DnaJ_CXXCXGXG PF00684.19 gi|261403651|ref|YP_003247875.1| - 1.2e-08 35.1 6.8 1.2e-08 35.1 6.8 2.6 1 1 1 2 2 2 2 DnaJ central domain S1 PF00575.23 gi|261403651|ref|YP_003247875.1| - 4.5e-08 33.3 2.9 1.6e-07 31.5 0.1 3.3 3 0 0 3 3 3 1 S1 RNA binding domain tRNA_anti-codon PF01336.25 gi|261403651|ref|YP_003247875.1| - 2.5e-05 24.2 0.4 0.00012 21.9 0.4 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|261403651|ref|YP_003247875.1| - 9.9e-05 22.5 0.1 0.00018 21.7 0.1 1.4 1 0 0 1 1 1 1 DHH family RMI2 PF16100.5 gi|261403651|ref|YP_003247875.1| - 0.0015 18.3 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 Anti-TRAP PF15777.5 gi|261403651|ref|YP_003247875.1| - 0.022 14.7 20.4 0.14 12.1 2.2 3.6 1 1 2 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein S1_2 PF13509.6 gi|261403651|ref|YP_003247875.1| - 0.12 12.4 0.4 0.4 10.8 0.0 2.1 2 0 0 2 2 2 0 S1 domain DUF5448 PF17526.2 gi|261403651|ref|YP_003247875.1| - 0.21 11.8 1.1 0.33 11.1 0.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5448) PolC_DP2 PF03833.13 gi|261403651|ref|YP_003247875.1| - 0.34 8.7 2.7 0.59 7.9 2.7 1.4 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF1356 PF07092.12 gi|261403651|ref|YP_003247875.1| - 4.2 6.6 7.2 8.6 5.6 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1356) DUF5351 PF17302.2 gi|261403651|ref|YP_003247875.1| - 4.3 7.6 19.4 12 6.2 0.4 4.7 4 0 0 4 4 4 0 Family of unknown function (DUF5351) tRNA-Thr_ED PF08915.11 gi|261403652|ref|YP_003247876.1| - 3e-54 182.8 0.1 5.7e-54 181.9 0.1 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|261403652|ref|YP_003247876.1| - 7.7e-25 86.9 2.7 2.5e-24 85.3 2.7 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|261403652|ref|YP_003247876.1| - 4.1e-14 52.9 0.1 1.1e-13 51.6 0.1 1.7 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) RgpF PF05045.12 gi|261403652|ref|YP_003247876.1| - 0.098 11.4 0.4 0.16 10.7 0.4 1.2 1 0 0 1 1 1 0 Rhamnan synthesis protein F AA_permease_2 PF13520.6 gi|261403653|ref|YP_003247877.1| - 4.6e-25 88.3 56.5 6.6e-25 87.8 56.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|261403653|ref|YP_003247877.1| - 5.2e-09 35.2 54.4 6e-07 28.4 54.3 2.2 1 1 0 1 1 1 1 Amino acid permease THUMP PF02926.17 gi|261403654|ref|YP_003247878.1| - 2.9e-10 40.4 4.6 2.9e-10 40.4 4.6 2.5 2 1 0 2 2 2 1 THUMP domain zf-4CXXC_R1 PF10497.9 gi|261403654|ref|YP_003247878.1| - 0.0098 16.1 1.0 3.6 7.9 0.1 2.7 2 0 0 2 2 2 2 Zinc-finger domain of monoamine-oxidase A repressor R1 Glyco_tranf_2_2 PF10111.9 gi|261403654|ref|YP_003247878.1| - 0.015 14.8 0.0 0.06 12.8 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase like family 2 RRT14 PF17075.5 gi|261403654|ref|YP_003247878.1| - 2 8.5 15.7 0.18 11.9 9.9 2.1 2 0 0 2 2 2 0 Regular of rDNA transcription protein 14 Ribosomal_L21e PF01157.18 gi|261403655|ref|YP_003247879.1| - 4.2e-39 132.5 3.2 4.6e-39 132.3 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.16 gi|261403656|ref|YP_003247880.1| - 2e-09 37.9 0.9 2.6e-09 37.5 0.9 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb4 PPR PF01535.20 gi|261403656|ref|YP_003247880.1| - 0.09 13.1 0.1 4.5 7.7 0.0 2.4 2 0 0 2 2 2 0 PPR repeat YscJ_FliF PF01514.17 gi|261403656|ref|YP_003247880.1| - 0.098 12.3 0.2 0.25 11.0 0.1 1.6 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family DUF655 PF04919.12 gi|261403657|ref|YP_003247881.1| - 7.8e-70 234.5 2.1 9.2e-70 234.3 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|261403657|ref|YP_003247881.1| - 0.017 15.4 0.0 0.032 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif Vac_ImportDeg PF09783.9 gi|261403657|ref|YP_003247881.1| - 0.053 13.3 0.6 0.072 12.9 0.6 1.2 1 0 0 1 1 1 0 Vacuolar import and degradation protein Plk4_PB2 PF18409.1 gi|261403657|ref|YP_003247881.1| - 0.064 13.9 0.1 0.11 13.1 0.1 1.4 1 0 0 1 1 1 0 Polo-like Kinase 4 Polo Box 2 Metallophos_2 PF12850.7 gi|261403658|ref|YP_003247882.1| - 1.8e-07 31.5 0.0 3.8e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|261403658|ref|YP_003247882.1| - 5.1e-06 27.1 5.6 7.6e-06 26.6 5.6 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Ribosomal_S13_N PF08069.12 gi|261403659|ref|YP_003247883.1| - 1.1e-29 102.2 0.1 2.2e-29 101.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|261403659|ref|YP_003247883.1| - 4.5e-19 68.4 0.6 6.6e-19 67.9 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 CBFD_NFYB_HMF PF00808.23 gi|261403659|ref|YP_003247883.1| - 0.16 12.3 0.0 16 5.9 0.0 2.3 2 0 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone ABC_tran PF00005.27 gi|261403660|ref|YP_003247884.1| - 1.8e-26 93.3 0.0 2.3e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|261403660|ref|YP_003247884.1| - 4.3e-12 45.9 0.0 5.7e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|261403660|ref|YP_003247884.1| - 4.1e-08 33.4 0.2 0.00023 21.1 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|261403660|ref|YP_003247884.1| - 8.2e-06 26.5 0.1 1e-05 26.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|261403660|ref|YP_003247884.1| - 0.00054 19.6 0.0 0.00099 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|261403660|ref|YP_003247884.1| - 0.0016 18.2 0.2 0.0025 17.6 0.2 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|261403660|ref|YP_003247884.1| - 0.0039 16.8 0.0 0.0075 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|261403660|ref|YP_003247884.1| - 0.014 15.6 0.0 0.038 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|261403660|ref|YP_003247884.1| - 0.02 15.2 0.1 0.56 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|261403660|ref|YP_003247884.1| - 0.037 13.9 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|261403660|ref|YP_003247884.1| - 0.042 14.4 0.3 0.4 11.2 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|261403660|ref|YP_003247884.1| - 0.053 13.1 0.0 0.13 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|261403660|ref|YP_003247884.1| - 0.058 13.1 0.1 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|261403660|ref|YP_003247884.1| - 0.077 13.1 0.4 0.16 12.1 0.4 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|261403660|ref|YP_003247884.1| - 0.13 12.3 0.3 0.66 10.0 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|261403660|ref|YP_003247884.1| - 0.16 11.7 1.5 0.26 11.0 0.2 1.9 2 1 1 3 3 3 0 AAA domain zf-HC2 PF13490.6 gi|261403660|ref|YP_003247884.1| - 0.36 11.1 0.1 0.36 11.1 0.1 2.0 2 0 0 2 2 1 0 Putative zinc-finger UPF0051 PF01458.17 gi|261403661|ref|YP_003247885.1| - 1.3e-34 119.8 0.8 2.1e-34 119.1 0.8 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Herpes_UL52 PF03121.15 gi|261403661|ref|YP_003247885.1| - 0.027 14.4 0.0 3.7 7.5 0.0 2.3 2 0 0 2 2 2 0 Herpesviridae UL52/UL70 DNA primase DUF447 PF04289.12 gi|261403662|ref|YP_003247886.1| - 2e-40 138.4 1.0 2.3e-40 138.2 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) IL8 PF00048.20 gi|261403662|ref|YP_003247886.1| - 0.022 14.9 0.0 0.065 13.4 0.0 1.7 1 0 0 1 1 1 0 Small cytokines (intecrine/chemokine), interleukin-8 like PhoU_div PF01865.16 gi|261403663|ref|YP_003247887.1| - 7.7e-58 195.3 12.2 8.6e-58 195.2 12.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|261403663|ref|YP_003247887.1| - 0.023 15.1 12.5 0.94 10.0 3.3 3.0 1 1 2 3 3 3 0 PhoU domain MatP PF06303.12 gi|261403663|ref|YP_003247887.1| - 0.16 12.5 1.0 0.7 10.5 0.3 2.2 2 0 0 2 2 2 0 MatP N-terminal domain Peptidase_S74 PF13884.6 gi|261403663|ref|YP_003247887.1| - 0.59 10.5 2.7 1.1 9.6 0.4 2.4 2 1 0 2 2 2 0 Chaperone of endosialidase PHO4 PF01384.20 gi|261403664|ref|YP_003247888.1| - 2.6e-44 151.6 31.8 2.7e-43 148.3 31.8 1.9 1 1 0 1 1 1 1 Phosphate transporter family HycI PF01750.18 gi|261403665|ref|YP_003247889.1| - 1.4e-24 86.4 2.2 2.5e-24 85.6 1.2 1.8 2 0 0 2 2 2 1 Hydrogenase maturation protease Sua5_yciO_yrdC PF01300.18 gi|261403666|ref|YP_003247890.1| - 1.9e-41 141.5 0.0 4.1e-41 140.4 0.0 1.6 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|261403666|ref|YP_003247890.1| - 6.7e-32 109.0 16.2 9.8e-17 60.4 2.2 2.5 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|261403666|ref|YP_003247890.1| - 1.4e-28 99.5 0.4 3.4e-28 98.3 0.4 1.7 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|261403666|ref|YP_003247890.1| - 1.2e-24 86.4 0.5 1.2e-24 86.4 0.5 1.9 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|261403666|ref|YP_003247890.1| - 0.00085 19.1 0.0 0.03 14.0 0.0 2.3 2 0 0 2 2 2 1 Glycoprotease family NMD3 PF04981.13 gi|261403666|ref|YP_003247890.1| - 0.0011 18.5 5.7 0.038 13.5 3.2 2.5 1 1 1 2 2 2 2 NMD3 family DUF1115 PF06544.12 gi|261403666|ref|YP_003247890.1| - 0.012 15.7 0.2 0.032 14.3 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Zn-ribbon_8 PF09723.10 gi|261403666|ref|YP_003247890.1| - 0.066 13.3 10.4 1.1 9.4 2.9 3.2 4 0 0 4 4 4 0 Zinc ribbon domain DUF2318 PF10080.9 gi|261403666|ref|YP_003247890.1| - 0.08 13.1 1.7 1.6 8.9 0.2 2.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) Methyltransf_13 PF08421.11 gi|261403666|ref|YP_003247890.1| - 3 8.1 7.2 4.5 7.6 0.1 3.1 2 1 1 3 3 3 0 Putative zinc binding domain zinc_ribbon_15 PF17032.5 gi|261403666|ref|YP_003247890.1| - 3.2 8.6 9.8 2.4 8.9 3.9 2.8 1 1 1 2 2 2 0 zinc-ribbon family Fe-ADH_2 PF13685.6 gi|261403667|ref|YP_003247891.1| - 3.7e-57 193.9 1.2 4.2e-56 190.4 1.2 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|261403667|ref|YP_003247891.1| - 8.8e-19 67.5 1.7 4.3e-17 62.0 1.7 2.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|261403667|ref|YP_003247891.1| - 3.1e-10 39.7 0.7 1.7e-05 24.2 0.8 2.8 2 1 0 2 2 2 2 3-dehydroquinate synthase Transket_pyr PF02779.24 gi|261403669|ref|YP_003247893.1| - 5.5e-44 150.0 0.2 8.8e-44 149.3 0.2 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|261403669|ref|YP_003247893.1| - 2.3e-33 114.7 0.2 6.3e-33 113.3 0.2 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|261403669|ref|YP_003247893.1| - 0.0016 18.7 0.1 0.11 12.8 0.0 2.6 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Alba PF01918.21 gi|261403669|ref|YP_003247893.1| - 0.09 12.6 0.1 0.29 11.0 0.1 1.8 1 0 0 1 1 1 0 Alba Rpp20 PF12328.8 gi|261403669|ref|YP_003247893.1| - 0.17 11.8 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Ribul_P_3_epim PF00834.19 gi|261403670|ref|YP_003247894.1| - 1.8e-81 272.3 3.3 2.3e-81 271.9 3.3 1.1 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.17 gi|261403670|ref|YP_003247894.1| - 0.03 13.7 0.2 0.3 10.4 0.1 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase Diphthami_syn_2 PF01902.17 gi|261403670|ref|YP_003247894.1| - 0.079 12.4 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Diphthamide synthase Vta1_C PF18097.1 gi|261403670|ref|YP_003247894.1| - 0.16 11.7 0.1 0.31 10.8 0.1 1.4 1 0 0 1 1 1 0 Vta1 C-terminal domain Transketolase_N PF00456.21 gi|261403671|ref|YP_003247895.1| - 8.4e-62 209.0 0.1 1.5e-61 208.2 0.1 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|261403671|ref|YP_003247895.1| - 1.4e-12 47.4 0.0 1.5e-08 34.2 0.0 2.3 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|261403671|ref|YP_003247895.1| - 6.8e-07 28.5 0.0 8.3e-07 28.2 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|261403671|ref|YP_003247895.1| - 2.7e-05 24.0 0.1 0.00037 20.3 0.1 2.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|261403671|ref|YP_003247895.1| - 5e-05 22.3 0.1 9e-05 21.4 0.1 1.4 1 1 0 1 1 1 1 XFP N-terminal domain RtcB PF01139.17 gi|261403672|ref|YP_003247896.1| - 2.1e-179 597.0 2.7 8.2e-170 565.4 0.6 2.2 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB Intein_splicing PF14890.6 gi|261403672|ref|YP_003247896.1| - 7.4e-19 68.0 2.7 1.3e-18 67.3 1.1 2.2 3 0 0 3 3 3 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|261403672|ref|YP_003247896.1| - 3.4e-08 33.7 3.5 0.00012 22.3 0.3 3.4 3 1 0 3 3 3 2 LAGLIDADG-like domain LAGLIDADG_WhiA PF14527.6 gi|261403672|ref|YP_003247896.1| - 0.0043 17.1 0.2 1.7 8.8 0.1 3.0 2 0 0 2 2 2 2 WhiA LAGLIDADG-like domain PP-binding_2 PF14573.6 gi|261403672|ref|YP_003247896.1| - 0.031 14.5 0.1 0.12 12.7 0.1 2.0 1 0 0 1 1 1 0 Acyl-carrier NTP_transf_2 PF01909.23 gi|261403673|ref|YP_003247897.1| - 3.7e-06 27.1 0.8 1.1e-05 25.6 0.2 2.1 1 1 2 3 3 3 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|261403673|ref|YP_003247897.1| - 0.0022 18.0 2.7 0.0038 17.3 0.2 2.4 1 1 1 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF3509 PF12021.8 gi|261403673|ref|YP_003247897.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3509) RNase_Zc3h12a PF11977.8 gi|261403674|ref|YP_003247898.1| - 4.3e-07 29.8 3.0 4.3e-07 29.8 3.0 1.9 2 0 0 2 2 2 1 Zc3h12a-like Ribonuclease NYN domain ParBc PF02195.18 gi|261403674|ref|YP_003247898.1| - 0.0089 16.3 0.1 0.025 14.8 0.1 1.8 1 0 0 1 1 1 1 ParB-like nuclease domain Hydant_A_N PF05378.13 gi|261403674|ref|YP_003247898.1| - 0.027 14.2 0.3 0.086 12.5 0.1 2.0 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region Linker_histone PF00538.19 gi|261403674|ref|YP_003247898.1| - 0.39 11.1 3.2 0.53 10.7 0.9 2.6 2 0 0 2 2 2 0 linker histone H1 and H5 family Ribosomal_S27e PF01667.17 gi|261403675|ref|YP_003247899.1| - 8.5e-27 92.6 2.3 9.3e-27 92.5 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|261403675|ref|YP_003247899.1| - 0.013 14.9 1.6 0.77 9.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|261403675|ref|YP_003247899.1| - 0.013 15.4 0.9 1.1 9.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|261403675|ref|YP_003247899.1| - 0.015 15.1 4.2 0.55 10.1 0.3 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|261403675|ref|YP_003247899.1| - 0.02 14.5 0.3 0.025 14.3 0.3 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 HypA PF01155.19 gi|261403675|ref|YP_003247899.1| - 0.036 14.1 0.3 0.042 13.9 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2614 PF11023.8 gi|261403675|ref|YP_003247899.1| - 0.036 14.1 0.3 0.042 13.9 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF3797 PF12677.7 gi|261403675|ref|YP_003247899.1| - 0.044 13.7 0.9 0.044 13.7 0.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Stc1 PF12898.7 gi|261403675|ref|YP_003247899.1| - 0.055 14.0 0.2 0.065 13.8 0.2 1.2 1 0 0 1 1 1 0 Stc1 domain DUF35_N PF12172.8 gi|261403675|ref|YP_003247899.1| - 0.084 12.8 0.2 0.89 9.5 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) eIF-5_eIF-2B PF01873.17 gi|261403675|ref|YP_003247899.1| - 0.089 12.7 1.3 0.12 12.3 1.3 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-C4_Topoisom PF01396.19 gi|261403675|ref|YP_003247899.1| - 0.11 12.3 4.4 1.6 8.6 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|261403675|ref|YP_003247899.1| - 0.13 11.8 3.5 0.21 11.1 3.5 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding PADR1 PF08063.12 gi|261403675|ref|YP_003247899.1| - 0.37 10.6 2.9 0.83 9.5 1.3 1.9 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-C2H2_3 PF13878.6 gi|261403675|ref|YP_003247899.1| - 0.37 10.7 1.5 5.2 7.0 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF1610 PF07754.11 gi|261403675|ref|YP_003247899.1| - 0.72 9.9 5.5 1.9 8.5 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_5 PF13719.6 gi|261403675|ref|YP_003247899.1| - 4 7.3 6.8 18 5.2 4.5 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_L44 PF00935.19 gi|261403676|ref|YP_003247900.1| - 1.6e-28 99.0 1.4 2.4e-28 98.4 1.4 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_L33 PF00471.20 gi|261403676|ref|YP_003247900.1| - 0.00022 21.6 9.4 0.0015 18.9 4.8 2.4 2 1 0 2 2 2 1 Ribosomal protein L33 HypA PF01155.19 gi|261403676|ref|YP_003247900.1| - 0.05 13.6 0.3 3.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|261403676|ref|YP_003247900.1| - 0.07 12.6 2.5 0.8 9.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|261403676|ref|YP_003247900.1| - 0.076 13.3 1.9 0.61 10.4 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|261403676|ref|YP_003247900.1| - 0.27 11.0 6.0 5.5 6.8 0.5 2.5 3 0 0 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|261403676|ref|YP_003247900.1| - 2 8.4 6.9 5.8 6.9 0.2 2.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|261403676|ref|YP_003247900.1| - 2.5 8.2 7.5 8.9 6.4 1.8 2.4 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF2538 PF10804.8 gi|261403677|ref|YP_003247901.1| - 0.058 13.2 1.9 0.078 12.7 1.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2538) PCNA_N PF00705.18 gi|261403678|ref|YP_003247902.1| - 1.1e-22 80.1 1.0 1.1e-22 80.1 1.0 1.9 2 1 1 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|261403678|ref|YP_003247902.1| - 2e-17 63.5 1.2 1.1e-13 51.4 0.1 2.4 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain DNA_pol3_beta_3 PF02768.15 gi|261403678|ref|YP_003247902.1| - 9.4e-07 28.7 1.4 3e-06 27.1 0.2 2.2 2 0 0 2 2 2 1 DNA polymerase III beta subunit, C-terminal domain Rad9 PF04139.13 gi|261403678|ref|YP_003247902.1| - 6.1e-06 25.9 0.3 7.9e-06 25.5 0.3 1.2 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|261403678|ref|YP_003247902.1| - 2.7e-05 23.4 0.6 0.00072 18.7 0.1 2.3 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 HTH_56 PF18662.1 gi|261403678|ref|YP_003247902.1| - 0.54 10.4 2.7 18 5.4 0.1 2.2 1 1 1 2 2 2 0 Cch helix turn helix domain CM_2 PF01817.21 gi|261403679|ref|YP_003247903.1| - 9.7e-18 64.3 5.5 1.2e-17 64.1 5.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II Osmo_CC PF08946.10 gi|261403679|ref|YP_003247903.1| - 0.0081 16.4 1.4 0.0081 16.4 1.4 2.2 2 1 0 2 2 2 1 Osmosensory transporter coiled coil DUF313 PF03754.13 gi|261403679|ref|YP_003247903.1| - 0.023 14.9 1.5 0.028 14.6 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF313) PI_PP_C PF18365.1 gi|261403679|ref|YP_003247903.1| - 0.036 14.0 0.5 0.052 13.5 0.5 1.4 1 1 0 1 1 1 0 Phosphoinositide phosphatase C-terminal domain DUF3800 PF12686.7 gi|261403679|ref|YP_003247903.1| - 0.19 12.4 3.1 0.31 11.7 3.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Ribosomal_S17e PF00833.18 gi|261403680|ref|YP_003247904.1| - 7.2e-22 77.6 0.8 7.8e-22 77.5 0.8 1.0 1 0 0 1 1 1 1 Ribosomal S17 DHDPS PF00701.22 gi|261403681|ref|YP_003247905.1| - 2.2e-96 322.0 0.3 2.5e-96 321.8 0.3 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CutC PF03932.14 gi|261403681|ref|YP_003247905.1| - 0.03 13.8 0.0 0.053 13.0 0.0 1.3 1 0 0 1 1 1 0 CutC family Gly_kinase PF02595.15 gi|261403681|ref|YP_003247905.1| - 0.071 12.1 0.1 4.7 6.1 0.0 2.1 2 0 0 2 2 2 0 Glycerate kinase family Glu-tRNAGln PF02686.15 gi|261403682|ref|YP_003247906.1| - 5.5e-08 33.0 1.2 6.3e-08 32.8 1.2 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit TerB_C PF15615.6 gi|261403682|ref|YP_003247906.1| - 0.032 14.5 0.6 0.038 14.3 0.6 1.1 1 0 0 1 1 1 0 TerB-C domain Rrf2 PF02082.20 gi|261403683|ref|YP_003247907.1| - 1.3e-08 35.1 0.1 2.4e-08 34.2 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|261403683|ref|YP_003247907.1| - 7.7e-07 29.1 0.0 1.9e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|261403683|ref|YP_003247907.1| - 1.6e-05 24.5 0.1 2.8e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ACT_4 PF13291.6 gi|261403683|ref|YP_003247907.1| - 2.9e-05 24.6 0.2 6.4e-05 23.5 0.2 1.6 1 0 0 1 1 1 1 ACT domain HTH_5 PF01022.20 gi|261403683|ref|YP_003247907.1| - 3.3e-05 23.7 0.0 9e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family ACT PF01842.25 gi|261403683|ref|YP_003247907.1| - 8.1e-05 22.3 0.5 0.00016 21.4 0.5 1.5 1 0 0 1 1 1 1 ACT domain TrmB PF01978.19 gi|261403683|ref|YP_003247907.1| - 0.00023 21.0 0.1 0.005 16.7 0.0 2.4 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|261403683|ref|YP_003247907.1| - 0.00075 19.4 1.5 0.00086 19.2 0.1 1.8 2 0 0 2 2 2 1 HTH domain ACT_6 PF13740.6 gi|261403683|ref|YP_003247907.1| - 0.0013 18.7 0.2 0.0062 16.5 0.1 2.0 2 1 0 2 2 2 1 ACT domain MarR_2 PF12802.7 gi|261403683|ref|YP_003247907.1| - 0.0036 17.2 0.1 0.0097 15.8 0.0 1.8 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|261403683|ref|YP_003247907.1| - 0.0044 17.2 0.1 0.012 15.7 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF2250 PF10007.9 gi|261403683|ref|YP_003247907.1| - 0.0074 16.4 0.3 0.016 15.3 0.2 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|261403683|ref|YP_003247907.1| - 0.015 15.2 0.1 0.041 13.9 0.0 1.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|261403683|ref|YP_003247907.1| - 0.035 13.7 0.3 0.16 11.5 0.0 2.2 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|261403683|ref|YP_003247907.1| - 0.046 13.6 0.7 0.083 12.8 0.1 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit B-block_TFIIIC PF04182.12 gi|261403683|ref|YP_003247907.1| - 0.05 13.8 0.2 0.15 12.2 0.1 1.8 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.6 gi|261403683|ref|YP_003247907.1| - 0.16 12.0 1.6 0.2 11.6 0.3 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix CYTH PF01928.21 gi|261403684|ref|YP_003247908.1| - 1.7e-39 135.6 4.6 1.9e-39 135.5 4.6 1.0 1 0 0 1 1 1 1 CYTH domain PG_binding_2 PF08823.11 gi|261403684|ref|YP_003247908.1| - 1.9e-05 24.9 0.9 0.69 10.3 0.0 3.2 3 0 0 3 3 3 2 Putative peptidoglycan binding domain Adenine_glyco PF03352.13 gi|261403684|ref|YP_003247908.1| - 0.009 15.8 0.2 2.3 8.0 0.0 2.3 2 0 0 2 2 2 2 Methyladenine glycosylase Cyclophil_like PF04126.13 gi|261403684|ref|YP_003247908.1| - 0.013 15.3 0.3 5.4 6.9 0.0 2.3 2 0 0 2 2 2 0 Cyclophilin-like Glyoxalase_5 PF14696.6 gi|261403684|ref|YP_003247908.1| - 0.018 15.2 0.1 0.29 11.3 0.0 2.1 2 0 0 2 2 2 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal NAC PF01849.18 gi|261403684|ref|YP_003247908.1| - 0.02 14.8 0.3 0.061 13.3 0.3 1.9 1 0 0 1 1 1 0 NAC domain Ribosomal_L30 PF00327.20 gi|261403684|ref|YP_003247908.1| - 0.058 13.3 0.1 17 5.4 0.1 3.4 3 0 0 3 3 3 0 Ribosomal protein L30p/L7e DUF4162 PF13732.6 gi|261403684|ref|YP_003247908.1| - 0.092 13.5 7.5 0.096 13.4 1.5 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4162) HicA_toxin PF07927.12 gi|261403684|ref|YP_003247908.1| - 0.14 12.2 0.3 4.2 7.5 0.0 2.4 2 0 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, Methyltransf_8 PF05148.15 gi|261403684|ref|YP_003247908.1| - 0.14 11.9 2.9 1.1 9.1 0.3 2.3 2 1 0 2 2 2 0 Hypothetical methyltransferase B5 PF03484.15 gi|261403684|ref|YP_003247908.1| - 0.16 12.3 6.8 6.8 7.1 2.9 2.9 1 1 1 2 2 2 0 tRNA synthetase B5 domain DUF4250 PF14056.6 gi|261403684|ref|YP_003247908.1| - 0.17 11.8 4.1 0.23 11.5 0.2 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4250) PUB PF09409.10 gi|261403684|ref|YP_003247908.1| - 1.3 9.0 6.2 1.5 8.8 0.3 2.7 1 1 1 3 3 3 0 PUB domain DUF3567 PF12091.8 gi|261403684|ref|YP_003247908.1| - 1.5 9.0 4.4 1.2 9.3 0.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3567) CpxA_peri PF16527.5 gi|261403684|ref|YP_003247908.1| - 5.3 7.4 8.0 7 7.0 0.4 3.0 1 1 2 3 3 3 0 Two-component sensor protein CpxA, periplasmic domain Promethin PF16015.5 gi|261403685|ref|YP_003247909.1| - 0.0068 16.3 0.5 0.0068 16.3 0.5 1.0 1 0 0 1 1 1 1 Promethin PrgI PF12666.7 gi|261403685|ref|YP_003247909.1| - 0.098 13.4 2.4 0.15 12.8 2.4 1.4 1 1 0 1 1 1 0 PrgI family protein EPSP_synthase PF00275.20 gi|261403686|ref|YP_003247910.1| - 5.6e-143 476.6 0.0 6.5e-143 476.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Leucyl-specific PF14795.6 gi|261403686|ref|YP_003247910.1| - 0.087 12.9 0.2 0.48 10.5 0.0 2.4 2 1 0 2 2 2 0 Leucine-tRNA synthetase-specific domain DUF3794 PF12673.7 gi|261403686|ref|YP_003247910.1| - 0.87 9.9 4.0 26 5.2 0.6 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3794) HMGL-like PF00682.19 gi|261403687|ref|YP_003247911.1| - 8.3e-83 278.0 0.2 1.2e-82 277.4 0.2 1.2 1 0 0 1 1 1 1 HMGL-like Bac_luciferase PF00296.20 gi|261403687|ref|YP_003247911.1| - 0.083 12.3 0.0 0.19 11.1 0.0 1.5 2 0 0 2 2 2 0 Luciferase-like monooxygenase AP_endonuc_2 PF01261.24 gi|261403687|ref|YP_003247911.1| - 0.1 12.0 0.1 2.3 7.6 0.1 2.4 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel ADK PF00406.22 gi|261403687|ref|YP_003247911.1| - 0.14 12.3 0.2 0.29 11.2 0.2 1.5 1 0 0 1 1 1 0 Adenylate kinase PK_C PF02887.16 gi|261403688|ref|YP_003247912.1| - 2.1e-17 63.4 0.2 3.2e-17 62.8 0.2 1.3 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain DUF4780 PF16012.5 gi|261403688|ref|YP_003247912.1| - 0.057 12.9 0.0 0.077 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4780) DUF2334 PF10096.9 gi|261403689|ref|YP_003247913.1| - 2.9e-31 108.8 3.2 3.4e-31 108.5 3.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_deac_1 PF01522.21 gi|261403689|ref|YP_003247913.1| - 0.014 15.3 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide deacetylase GATase PF00117.28 gi|261403690|ref|YP_003247914.1| - 2.4e-25 89.4 0.0 2.8e-25 89.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|261403690|ref|YP_003247914.1| - 1.8e-08 34.5 0.4 6.4e-08 32.7 0.4 1.7 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|261403690|ref|YP_003247914.1| - 9.8e-07 28.6 0.1 1.4e-06 28.1 0.1 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|261403690|ref|YP_003247914.1| - 0.00059 19.7 0.2 0.021 14.6 0.2 2.4 2 1 0 2 2 2 1 Peptidase C26 Mistic PF11458.8 gi|261403690|ref|YP_003247914.1| - 0.085 12.8 1.5 1.2 9.1 0.2 2.9 3 0 0 3 3 3 0 Membrane-integrating protein Mistic DJ-1_PfpI PF01965.24 gi|261403690|ref|YP_003247914.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family TBP PF00352.21 gi|261403691|ref|YP_003247915.1| - 1.2e-61 204.7 0.1 3.3e-30 103.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|261403691|ref|YP_003247915.1| - 2.1e-08 34.2 0.0 0.00018 21.5 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF3378) Arm-DNA-bind_4 PF14657.6 gi|261403691|ref|YP_003247915.1| - 0.0046 16.7 2.9 1.1 9.1 0.1 2.2 2 0 0 2 2 2 2 Arm DNA-binding domain NdhS PF11623.8 gi|261403691|ref|YP_003247915.1| - 0.13 11.9 0.0 6.9 6.4 0.0 2.4 2 0 0 2 2 2 0 NAD(P)H dehydrogenase subunit S Sigma70_r1_1 PF03979.14 gi|261403691|ref|YP_003247915.1| - 0.13 12.3 4.7 0.35 11.0 1.3 2.7 3 1 0 3 3 3 0 Sigma-70 factor, region 1.1 Ribosomal_60s PF00428.19 gi|261403692|ref|YP_003247916.1| - 1.4e-17 64.0 19.3 1.6e-17 63.8 19.3 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein TetR_C_31 PF17940.1 gi|261403692|ref|YP_003247916.1| - 0.0057 16.8 1.7 0.0057 16.8 1.7 1.4 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain PepSY_2 PF13670.6 gi|261403692|ref|YP_003247916.1| - 0.021 14.8 6.5 1.4 9.0 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain VIGSSK PF14773.6 gi|261403692|ref|YP_003247916.1| - 0.025 14.7 3.0 0.2 11.8 0.1 2.4 2 0 0 2 2 2 0 Helicase-associated putative binding domain, C-terminal Ribosomal_L10 PF00466.20 gi|261403693|ref|YP_003247917.1| - 3.2e-20 72.1 0.2 6.5e-20 71.1 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|261403693|ref|YP_003247917.1| - 9.4e-20 70.4 0.1 2e-19 69.4 0.1 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P 7TMR-HDED PF07697.11 gi|261403693|ref|YP_003247917.1| - 0.028 14.5 7.4 0.033 14.3 0.4 3.1 3 0 0 3 3 3 0 7TM-HD extracellular Ribosomal_60s PF00428.19 gi|261403693|ref|YP_003247917.1| - 0.066 13.8 15.2 0.28 11.8 15.2 2.1 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|261403694|ref|YP_003247918.1| - 1.2e-42 146.0 0.7 1.4e-42 145.7 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RAC_head PF16717.5 gi|261403694|ref|YP_003247918.1| - 0.089 13.8 3.4 2.5 9.1 0.1 2.6 2 1 0 2 2 2 0 Ribosome-associated complex head domain Thi4 PF01946.17 gi|261403696|ref|YP_003247920.1| - 5.4e-93 310.5 2.6 5.4e-93 310.5 2.6 1.3 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|261403696|ref|YP_003247920.1| - 2.2e-12 47.2 6.0 9e-09 35.4 0.9 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|261403696|ref|YP_003247920.1| - 2.6e-10 39.9 5.6 7.6e-07 28.6 0.1 3.0 3 0 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.6 gi|261403696|ref|YP_003247920.1| - 7e-10 39.0 0.2 2.3e-09 37.4 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|261403696|ref|YP_003247920.1| - 4.1e-08 33.0 1.2 4.1e-08 33.0 1.2 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|261403696|ref|YP_003247920.1| - 1.9e-07 30.7 0.6 3.4e-07 29.8 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|261403696|ref|YP_003247920.1| - 9e-07 28.4 1.3 2.3e-06 27.1 0.3 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|261403696|ref|YP_003247920.1| - 5.1e-06 25.5 2.0 9.9e-06 24.5 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|261403696|ref|YP_003247920.1| - 0.00014 21.3 0.2 0.0025 17.2 0.1 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|261403696|ref|YP_003247920.1| - 0.00019 20.8 0.1 0.00046 19.5 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|261403696|ref|YP_003247920.1| - 0.0012 19.3 2.3 0.004 17.7 0.2 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|261403696|ref|YP_003247920.1| - 0.002 17.2 0.6 0.01 14.9 0.0 2.1 2 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|261403696|ref|YP_003247920.1| - 0.0057 16.7 1.7 0.017 15.1 0.4 2.2 2 1 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|261403696|ref|YP_003247920.1| - 0.032 13.3 0.1 0.032 13.3 0.1 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|261403696|ref|YP_003247920.1| - 0.035 13.0 0.2 0.33 9.7 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|261403696|ref|YP_003247920.1| - 0.041 14.3 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|261403696|ref|YP_003247920.1| - 0.059 13.4 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|261403696|ref|YP_003247920.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) MethyltransfD12 PF02086.15 gi|261403697|ref|YP_003247921.1| - 6.5e-77 258.7 17.0 7.3e-77 258.5 17.0 1.0 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Complex1_LYR PF05347.15 gi|261403697|ref|YP_003247921.1| - 0.0025 17.8 3.1 0.0028 17.7 1.6 1.8 2 0 0 2 2 2 1 Complex 1 protein (LYR family) Radical_SAM PF04055.21 gi|261403698|ref|YP_003247922.1| - 1.8e-11 44.7 0.6 1.2e-10 42.0 0.2 2.4 2 1 0 2 2 2 1 Radical SAM superfamily DUF2666 PF10869.8 gi|261403699|ref|YP_003247923.1| - 3e-59 199.1 12.6 3.3e-59 198.9 12.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2666) Flu_M1 PF00598.19 gi|261403699|ref|YP_003247923.1| - 0.043 13.3 0.3 0.052 13.1 0.3 1.1 1 0 0 1 1 1 0 Influenza Matrix protein (M1) Ribosomal_L18A PF01775.17 gi|261403700|ref|YP_003247924.1| - 7.9e-10 38.9 0.0 1.2e-09 38.3 0.0 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A PI3Ka PF00613.20 gi|261403700|ref|YP_003247924.1| - 0.058 12.8 0.0 0.058 12.8 0.0 1.0 1 0 0 1 1 1 0 Phosphoinositide 3-kinase family, accessory domain (PIK domain) Hexose_dehydrat PF03559.14 gi|261403700|ref|YP_003247924.1| - 0.072 12.5 0.0 0.084 12.3 0.0 1.0 1 0 0 1 1 1 0 NDP-hexose 2,3-dehydratase Pcc1 PF09341.10 gi|261403701|ref|YP_003247925.1| - 4.4e-13 49.1 0.0 4.8e-13 49.0 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Brix PF04427.18 gi|261403702|ref|YP_003247926.1| - 0.056 13.5 0.0 0.087 12.9 0.0 1.2 1 1 0 1 1 1 0 Brix domain Lipoprotein_19 PF13617.6 gi|261403702|ref|YP_003247926.1| - 0.13 12.1 4.1 12 5.8 0.5 3.2 3 0 0 3 3 3 0 YnbE-like lipoprotein zf-C2HC5 PF06221.13 gi|261403703|ref|YP_003247927.1| - 0.00029 20.7 0.5 0.00034 20.5 0.5 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.10 gi|261403703|ref|YP_003247927.1| - 0.00099 19.2 0.6 0.0015 18.6 0.6 1.3 1 0 0 1 1 1 1 Zinc ribbon domain RNHCP PF12647.7 gi|261403703|ref|YP_003247927.1| - 0.0015 18.5 0.6 0.0015 18.4 0.6 1.1 1 0 0 1 1 1 1 RNHCP domain DNA_RNApol_7kD PF03604.13 gi|261403703|ref|YP_003247927.1| - 0.002 17.8 5.9 0.003 17.2 5.9 1.3 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit IBR PF01485.21 gi|261403703|ref|YP_003247927.1| - 0.0062 16.7 1.0 0.0077 16.4 1.0 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Zn_ribbon_SprT PF17283.2 gi|261403703|ref|YP_003247927.1| - 0.0076 16.1 1.2 1.4 8.9 0.3 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain HypA PF01155.19 gi|261403703|ref|YP_003247927.1| - 0.011 15.8 0.4 0.011 15.8 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|261403703|ref|YP_003247927.1| - 0.019 15.1 1.3 0.023 14.9 1.3 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NOB1_Zn_bind PF08772.11 gi|261403703|ref|YP_003247927.1| - 0.019 15.1 0.7 0.019 15.1 0.7 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc-ribbons_6 PF07191.12 gi|261403703|ref|YP_003247927.1| - 0.023 14.7 0.6 0.028 14.4 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|261403703|ref|YP_003247927.1| - 0.028 14.7 0.2 0.034 14.4 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon zf-LITAF-like PF10601.9 gi|261403703|ref|YP_003247927.1| - 0.03 14.6 0.9 4.7 7.5 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DNA_primase_lrg PF04104.14 gi|261403703|ref|YP_003247927.1| - 0.032 13.6 0.5 0.032 13.6 0.5 1.0 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit zf_UBZ PF18439.1 gi|261403703|ref|YP_003247927.1| - 0.062 12.9 0.9 2 8.1 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1451 PF07295.11 gi|261403703|ref|YP_003247927.1| - 0.071 13.1 0.9 0.077 13.0 0.9 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_4 PF13717.6 gi|261403703|ref|YP_003247927.1| - 0.23 11.4 5.7 4.8 7.2 4.6 2.4 2 1 1 3 3 3 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|261403703|ref|YP_003247927.1| - 0.23 11.3 5.7 0.31 10.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L37ae PF01780.19 gi|261403704|ref|YP_003247928.1| - 1.8e-33 114.5 4.6 2e-33 114.3 4.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_ribbon_SprT PF17283.2 gi|261403704|ref|YP_003247928.1| - 0.00074 19.4 1.4 0.0017 18.2 1.4 1.6 1 1 0 1 1 1 1 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|261403704|ref|YP_003247928.1| - 0.0062 16.2 2.8 1.7 8.5 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|261403704|ref|YP_003247928.1| - 0.0063 16.4 0.5 0.011 15.6 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|261403704|ref|YP_003247928.1| - 0.0083 15.6 1.8 0.016 14.7 1.8 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|261403704|ref|YP_003247928.1| - 0.037 14.4 0.3 0.057 13.8 0.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|261403704|ref|YP_003247928.1| - 0.045 13.4 2.6 1.8 8.3 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RPA_interact_C PF14768.6 gi|261403704|ref|YP_003247928.1| - 0.054 14.1 0.0 0.067 13.8 0.0 1.2 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zinc_ribbon_10 PF10058.9 gi|261403704|ref|YP_003247928.1| - 0.059 13.1 3.0 2.8 7.7 0.1 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Prok-RING_1 PF14446.6 gi|261403704|ref|YP_003247928.1| - 0.067 13.1 0.9 0.11 12.4 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.7 gi|261403704|ref|YP_003247928.1| - 0.069 13.1 2.7 0.1 12.6 2.7 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|261403704|ref|YP_003247928.1| - 0.089 13.0 3.0 0.3 11.3 3.0 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-Mss51 PF13824.6 gi|261403704|ref|YP_003247928.1| - 0.11 12.6 0.2 0.11 12.6 0.2 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF4428 PF14471.6 gi|261403704|ref|YP_003247928.1| - 0.11 12.4 2.2 0.3 11.0 2.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.10 gi|261403704|ref|YP_003247928.1| - 0.18 11.9 2.7 0.82 9.8 0.2 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|261403704|ref|YP_003247928.1| - 0.37 10.4 0.8 6.1 6.5 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger ADK_lid PF05191.14 gi|261403704|ref|YP_003247928.1| - 0.51 10.4 2.7 20 5.2 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rubredoxin PF00301.20 gi|261403704|ref|YP_003247928.1| - 0.8 9.8 5.9 3 7.9 0.6 2.6 2 1 0 2 2 2 0 Rubredoxin A2L_zn_ribbon PF08792.10 gi|261403704|ref|YP_003247928.1| - 0.9 9.3 3.7 7.4 6.4 3.9 2.0 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-HIT PF04438.16 gi|261403704|ref|YP_003247928.1| - 1.1 9.2 6.2 6.6 6.7 6.2 2.0 1 1 0 1 1 1 0 HIT zinc finger zf-BED PF02892.15 gi|261403704|ref|YP_003247928.1| - 1.1 9.3 5.0 0.87 9.7 0.3 2.1 1 1 1 2 2 2 0 BED zinc finger zf-ribbon_3 PF13248.6 gi|261403704|ref|YP_003247928.1| - 1.2 8.6 7.3 30 4.2 7.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|261403704|ref|YP_003247928.1| - 9.2 6.9 7.0 2.4 8.8 1.7 2.3 3 0 0 3 3 2 0 Zinc-finger double domain SBDS PF01172.18 gi|261403705|ref|YP_003247929.1| - 2.5e-23 82.0 0.4 2.5e-23 82.0 0.4 1.8 2 0 0 2 2 2 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|261403705|ref|YP_003247929.1| - 1e-21 77.1 0.3 1.7e-21 76.4 0.3 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain hDGE_amylase PF14701.6 gi|261403705|ref|YP_003247929.1| - 0.016 14.3 0.6 0.02 14.0 0.6 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain Ribonucleas_3_3 PF14622.6 gi|261403705|ref|YP_003247929.1| - 0.032 14.4 0.1 0.051 13.7 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease-III-like Proteasome PF00227.26 gi|261403706|ref|YP_003247930.1| - 3.5e-67 225.6 0.2 4.5e-67 225.2 0.2 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|261403706|ref|YP_003247930.1| - 4e-14 52.0 0.7 1.2e-13 50.4 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF835 PF05763.12 gi|261403706|ref|YP_003247930.1| - 0.0072 16.1 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) Fe-S_biosyn PF01521.20 gi|261403707|ref|YP_003247931.1| - 0.00023 21.3 0.0 0.00028 21.1 0.0 1.1 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Flavoprotein PF02441.19 gi|261403708|ref|YP_003247932.1| - 5.5e-14 52.2 0.0 9e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein Fer4 PF00037.27 gi|261403708|ref|YP_003247932.1| - 2e-11 43.2 17.7 2.8e-07 30.0 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403708|ref|YP_003247932.1| - 5.6e-09 35.7 15.7 2.2e-06 27.5 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261403708|ref|YP_003247932.1| - 2.2e-08 34.9 10.6 2.4e-05 25.2 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|261403708|ref|YP_003247932.1| - 4.8e-08 33.0 26.3 4.2e-05 23.6 17.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403708|ref|YP_003247932.1| - 4.7e-07 29.9 13.8 1.6e-06 28.2 14.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403708|ref|YP_003247932.1| - 1.7e-06 28.4 6.0 0.0019 18.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403708|ref|YP_003247932.1| - 3.6e-06 27.5 14.6 1.7e-05 25.3 15.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403708|ref|YP_003247932.1| - 3.7e-06 27.0 12.1 6.4e-06 26.2 12.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|261403708|ref|YP_003247932.1| - 7.6e-06 26.4 9.6 0.0027 18.2 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403708|ref|YP_003247932.1| - 1.5e-05 24.8 15.2 0.0014 18.6 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|261403708|ref|YP_003247932.1| - 0.00075 19.8 1.2 0.00075 19.8 1.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261403708|ref|YP_003247932.1| - 0.0076 17.1 10.1 0.017 16.0 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261403708|ref|YP_003247932.1| - 0.0083 16.6 9.3 0.41 11.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|261403708|ref|YP_003247932.1| - 0.016 15.9 8.0 1.6 9.5 2.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|261403708|ref|YP_003247932.1| - 0.023 15.6 24.0 0.05 14.6 5.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|261403708|ref|YP_003247932.1| - 9.1 6.5 13.1 4.8 7.4 1.5 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain PPS_PS PF02006.16 gi|261403709|ref|YP_003247933.1| - 1e-72 243.4 3.3 1.3e-72 243.0 3.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase ATP-grasp_2 PF08442.10 gi|261403710|ref|YP_003247934.1| - 8.3e-71 237.7 3.4 8.3e-71 237.7 3.4 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|261403710|ref|YP_003247934.1| - 4.8e-12 46.0 0.2 4.8e-12 46.0 0.2 1.8 3 0 0 3 3 3 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|261403710|ref|YP_003247934.1| - 1.2e-10 41.2 0.8 1.3e-09 37.9 0.8 2.2 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|261403710|ref|YP_003247934.1| - 2.2e-06 27.6 0.8 4.6e-06 26.5 0.8 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|261403710|ref|YP_003247934.1| - 0.0079 15.8 0.7 0.035 13.7 0.5 2.2 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|261403710|ref|YP_003247934.1| - 0.018 14.6 0.3 0.029 13.8 0.3 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HeH PF12949.7 gi|261403710|ref|YP_003247934.1| - 0.1 12.3 0.3 1.8 8.4 0.0 2.9 3 0 0 3 3 3 0 HeH/LEM domain DUF5461 PF17545.2 gi|261403710|ref|YP_003247934.1| - 0.29 11.5 4.8 0.18 12.1 2.6 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5461) Vpu PF00558.19 gi|261403711|ref|YP_003247935.1| - 0.088 12.6 1.9 0.14 12.0 1.9 1.3 1 0 0 1 1 1 0 Vpu protein Phage_holin_6_1 PF09682.10 gi|261403711|ref|YP_003247935.1| - 0.4 11.1 4.4 0.17 12.3 2.3 1.4 2 0 0 2 2 2 0 Bacteriophage holin of superfamily 6 (Holin_LLH) Epimerase PF01370.21 gi|261403713|ref|YP_003247937.1| - 9.7e-66 221.7 0.2 1.2e-65 221.4 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|261403713|ref|YP_003247937.1| - 1.4e-60 205.5 0.4 8.2e-60 202.9 0.4 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|261403713|ref|YP_003247937.1| - 5e-28 97.9 0.6 6.6e-28 97.5 0.6 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|261403713|ref|YP_003247937.1| - 1.4e-18 67.1 0.5 1.9e-17 63.3 0.5 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|261403713|ref|YP_003247937.1| - 3.1e-16 59.3 0.0 3.5e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|261403713|ref|YP_003247937.1| - 6.4e-16 58.3 0.0 1.3e-10 40.9 0.0 2.6 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|261403713|ref|YP_003247937.1| - 7e-09 35.8 0.0 1e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|261403713|ref|YP_003247937.1| - 0.00019 21.0 0.4 0.00052 19.5 0.4 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|261403713|ref|YP_003247937.1| - 0.0032 17.4 0.0 0.079 12.9 0.0 2.2 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|261403713|ref|YP_003247937.1| - 0.005 16.4 0.5 0.0092 15.6 0.2 1.6 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|261403713|ref|YP_003247937.1| - 0.0067 16.7 0.8 0.014 15.6 0.3 1.8 2 0 0 2 2 2 1 TrkA-N domain Alba PF01918.21 gi|261403714|ref|YP_003247938.1| - 3.1e-20 71.7 3.2 4.4e-20 71.3 3.2 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|261403714|ref|YP_003247938.1| - 2.5e-05 24.2 0.3 3e-05 24.0 0.3 1.2 1 0 0 1 1 1 1 Rpp20 subunit of nuclear RNase MRP and P RNA_binding PF01877.17 gi|261403715|ref|YP_003247939.1| - 1.1e-36 125.8 4.0 1.1e-36 125.8 4.0 1.5 2 0 0 2 2 2 1 RNA binding PP_kinase_C PF13090.6 gi|261403715|ref|YP_003247939.1| - 0.027 14.0 0.5 1.2 8.6 0.0 2.1 1 1 1 2 2 2 0 Polyphosphate kinase C-terminal domain 2 DUF4550 PF15084.6 gi|261403715|ref|YP_003247939.1| - 0.042 14.3 2.1 0.072 13.5 0.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4550) HypA PF01155.19 gi|261403716|ref|YP_003247940.1| - 3.7e-29 101.0 2.0 4.3e-29 100.8 2.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|261403716|ref|YP_003247940.1| - 0.029 14.3 2.1 0.058 13.4 2.1 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF4791 PF16039.5 gi|261403716|ref|YP_003247940.1| - 0.044 13.3 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4791) Mu-like_Com PF10122.9 gi|261403716|ref|YP_003247940.1| - 0.11 11.9 1.7 0.28 10.7 1.7 1.7 1 1 0 1 1 1 0 Mu-like prophage protein Com Cys_rich_KTR PF14205.6 gi|261403716|ref|YP_003247940.1| - 0.12 12.1 2.7 0.27 11.1 1.4 2.2 2 1 0 2 2 2 0 Cysteine-rich KTR Zn-ribbon_8 PF09723.10 gi|261403716|ref|YP_003247940.1| - 0.18 11.9 3.6 0.47 10.6 3.6 1.7 1 0 0 1 1 1 0 Zinc ribbon domain ATPase_2 PF01637.18 gi|261403717|ref|YP_003247941.1| - 2e-89 299.5 9.2 2e-89 299.5 9.2 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|261403717|ref|YP_003247941.1| - 1.2e-10 42.1 0.0 4.7e-10 40.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|261403717|ref|YP_003247941.1| - 2.7e-10 40.6 0.0 1.4e-09 38.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|261403717|ref|YP_003247941.1| - 4.1e-09 36.6 10.1 2.4e-05 24.4 0.1 3.2 2 1 1 3 3 3 2 AAA domain AAA PF00004.29 gi|261403717|ref|YP_003247941.1| - 5.9e-07 30.0 0.0 7.8e-06 26.4 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA12 PF10443.9 gi|261403717|ref|YP_003247941.1| - 0.0001 21.2 0.1 0.022 13.5 0.0 2.9 2 1 1 3 3 3 1 RNA12 protein TniB PF05621.11 gi|261403717|ref|YP_003247941.1| - 0.0024 17.3 0.4 1.4 8.3 0.0 3.2 3 0 0 3 3 3 1 Bacterial TniB protein Rad17 PF03215.15 gi|261403717|ref|YP_003247941.1| - 0.0028 17.6 2.7 0.0077 16.2 0.0 2.7 2 2 1 3 3 3 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|261403717|ref|YP_003247941.1| - 0.004 17.5 0.0 0.021 15.2 0.0 2.3 1 1 1 2 2 2 1 RNA helicase NB-ARC PF00931.22 gi|261403717|ref|YP_003247941.1| - 0.013 14.7 0.2 0.37 9.9 0.0 2.7 2 1 1 3 3 3 0 NB-ARC domain AAA_18 PF13238.6 gi|261403717|ref|YP_003247941.1| - 0.015 15.8 0.5 0.32 11.6 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|261403717|ref|YP_003247941.1| - 0.02 14.4 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_13 PF13166.6 gi|261403717|ref|YP_003247941.1| - 0.038 12.6 7.4 0.02 13.6 0.7 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|261403717|ref|YP_003247941.1| - 0.042 14.2 0.0 0.57 10.5 0.0 2.4 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|261403717|ref|YP_003247941.1| - 0.042 13.9 0.3 0.4 10.8 0.0 2.6 2 1 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|261403717|ref|YP_003247941.1| - 0.044 13.7 0.8 3.6 7.5 0.0 3.0 3 0 0 3 3 3 0 NTPase FTCD_C PF04961.12 gi|261403717|ref|YP_003247941.1| - 0.048 13.4 0.1 0.085 12.6 0.1 1.3 1 0 0 1 1 1 0 Formiminotransferase-cyclodeaminase ABC_tran PF00005.27 gi|261403717|ref|YP_003247941.1| - 0.05 14.1 0.0 0.12 12.9 0.0 1.7 1 1 0 1 1 1 0 ABC transporter Viral_helicase1 PF01443.18 gi|261403717|ref|YP_003247941.1| - 0.071 12.8 0.0 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ATP-synt_ab PF00006.25 gi|261403717|ref|YP_003247941.1| - 0.17 11.5 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TetR_C_8 PF14278.6 gi|261403717|ref|YP_003247941.1| - 1.6 8.8 12.3 3.6 7.8 0.1 4.3 2 2 2 5 5 5 0 Transcriptional regulator C-terminal region AAA_23 PF13476.6 gi|261403717|ref|YP_003247941.1| - 2.1 8.8 12.9 3.1e+02 1.7 12.9 2.9 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|261403718|ref|YP_003247942.1| - 1.2e-68 230.9 0.0 1.6e-68 230.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|261403718|ref|YP_003247942.1| - 1.7e-14 54.1 2.3 3.5e-14 53.1 2.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|261403718|ref|YP_003247942.1| - 0.0019 18.3 0.6 0.0064 16.6 0.6 1.9 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.25 gi|261403719|ref|YP_003247943.1| - 1.1e-91 306.2 0.0 2.4e-91 305.1 0.0 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|261403719|ref|YP_003247943.1| - 8.5e-48 161.2 0.8 1.9e-47 160.1 0.8 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|261403719|ref|YP_003247943.1| - 2.5e-16 59.9 3.3 2.5e-16 59.9 3.3 3.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain RnfC_N PF13375.6 gi|261403719|ref|YP_003247943.1| - 0.0016 18.4 4.1 0.029 14.3 0.3 2.8 3 0 0 3 3 3 1 RnfC Barrel sandwich hybrid domain Peptidase_M23 PF01551.22 gi|261403719|ref|YP_003247943.1| - 0.014 15.6 0.2 1.2 9.4 0.0 2.8 2 0 0 2 2 2 0 Peptidase family M23 AAA_22 PF13401.6 gi|261403719|ref|YP_003247943.1| - 0.12 12.7 0.0 0.32 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Myosin_N PF02736.19 gi|261403719|ref|YP_003247943.1| - 0.75 9.7 4.7 4.9 7.1 2.1 3.2 2 1 0 2 2 2 0 Myosin N-terminal SH3-like domain ATP-synt_F PF01990.17 gi|261403720|ref|YP_003247944.1| - 6.2e-21 74.5 2.0 7.4e-21 74.3 2.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit LUD_dom PF02589.15 gi|261403720|ref|YP_003247944.1| - 0.0064 16.2 0.2 0.0072 16.1 0.2 1.1 1 0 0 1 1 1 1 LUD domain vATP-synt_AC39 PF01992.16 gi|261403721|ref|YP_003247945.1| - 3.1e-80 270.2 6.1 4.2e-80 269.8 6.1 1.2 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit vATP-synt_E PF01991.18 gi|261403722|ref|YP_003247946.1| - 1.8e-52 177.7 22.1 2e-52 177.5 22.1 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|261403722|ref|YP_003247946.1| - 0.0059 17.0 16.8 0.015 15.7 16.8 1.6 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3253 PF11625.8 gi|261403722|ref|YP_003247946.1| - 0.1 12.8 1.9 1.4 9.2 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) ATP-synt_B PF00430.18 gi|261403722|ref|YP_003247946.1| - 0.15 12.2 20.2 0.63 10.1 18.8 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) HrpE PF06188.12 gi|261403722|ref|YP_003247946.1| - 0.21 11.4 6.0 1.4 8.8 6.0 1.9 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.13 gi|261403722|ref|YP_003247946.1| - 0.3 11.2 19.9 0.43 10.7 10.9 2.5 1 1 1 2 2 2 0 DivIVA protein Pinin_SDK_memA PF04696.13 gi|261403722|ref|YP_003247946.1| - 0.93 9.6 16.1 1.8 8.6 16.1 1.5 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region ATP-synt_C PF00137.21 gi|261403723|ref|YP_003247947.1| - 3.4e-49 165.0 51.1 3.2e-17 62.6 11.3 3.2 3 0 0 3 3 3 3 ATP synthase subunit C V_ATPase_I PF01496.19 gi|261403724|ref|YP_003247948.1| - 1.5e-31 109.2 3.6 2e-15 55.8 0.0 2.9 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family DUF4125 PF13526.6 gi|261403724|ref|YP_003247948.1| - 0.05 13.2 0.2 0.11 12.1 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4125) tRNA-synt_2 PF00152.20 gi|261403724|ref|YP_003247948.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class II (D, K and N) UPF0242 PF06785.11 gi|261403724|ref|YP_003247948.1| - 0.22 11.6 3.2 5.8 7.0 0.2 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Takusan PF04822.13 gi|261403724|ref|YP_003247948.1| - 0.27 11.1 1.6 26 4.8 0.3 2.6 2 0 0 2 2 2 0 Takusan Fez1 PF06818.15 gi|261403724|ref|YP_003247948.1| - 0.52 10.7 3.0 1.2 9.6 0.6 2.1 2 0 0 2 2 2 0 Fez1 FlaC_arch PF05377.11 gi|261403724|ref|YP_003247948.1| - 0.79 10.2 9.9 0.28 11.6 1.4 3.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Laminin_II PF06009.12 gi|261403724|ref|YP_003247948.1| - 6.3 6.8 7.5 56 3.7 1.2 3.2 2 1 1 3 3 3 0 Laminin Domain II ATP-synt_B PF00430.18 gi|261403725|ref|YP_003247949.1| - 0.0026 17.8 27.8 0.17 12.0 10.7 1.9 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) RapA_C PF12137.8 gi|261403725|ref|YP_003247949.1| - 0.0079 15.3 8.9 0.0099 14.9 8.9 1.2 1 0 0 1 1 1 1 RNA polymerase recycling family C-terminal V-ATPase_G_2 PF16999.5 gi|261403725|ref|YP_003247949.1| - 0.014 15.8 26.0 0.042 14.3 26.0 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit HrpE PF06188.12 gi|261403725|ref|YP_003247949.1| - 0.023 14.6 6.1 0.028 14.3 6.1 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF4901 PF16244.5 gi|261403725|ref|YP_003247949.1| - 0.063 12.6 3.0 0.07 12.5 3.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4901) DUF3552 PF12072.8 gi|261403725|ref|YP_003247949.1| - 0.081 12.3 29.0 0.24 10.8 12.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|261403725|ref|YP_003247949.1| - 0.19 11.8 24.4 0.9 9.6 6.0 2.0 1 1 1 2 2 2 0 DivIVA protein GBP_C PF02841.14 gi|261403725|ref|YP_003247949.1| - 0.35 10.2 21.2 0.4 10.0 21.2 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF3492 PF11997.8 gi|261403725|ref|YP_003247949.1| - 0.48 10.1 4.5 0.54 9.9 4.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3492) GlutR_dimer PF00745.20 gi|261403725|ref|YP_003247949.1| - 0.54 10.7 15.3 0.075 13.5 8.6 2.0 1 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain CinA_KH PF18146.1 gi|261403725|ref|YP_003247949.1| - 0.98 9.6 16.1 0.68 10.1 3.2 2.8 1 1 1 3 3 3 0 Damage-inducible protein CinA KH domain RRF PF01765.19 gi|261403725|ref|YP_003247949.1| - 1.1 9.2 19.4 1.4 8.8 19.4 1.3 1 0 0 1 1 1 0 Ribosome recycling factor RGS PF00615.19 gi|261403725|ref|YP_003247949.1| - 1.1 9.5 5.4 1.4 9.2 5.4 1.1 1 0 0 1 1 1 0 Regulator of G protein signaling domain Ribosomal_L22 PF00237.19 gi|261403725|ref|YP_003247949.1| - 1.2 9.4 10.5 2.3 8.5 10.5 1.6 1 1 0 1 1 1 0 Ribosomal protein L22p/L17e V-ATPase_G PF03179.15 gi|261403725|ref|YP_003247949.1| - 1.4 9.5 28.8 7.6 7.1 16.5 2.1 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF5401 PF17380.2 gi|261403725|ref|YP_003247949.1| - 1.6 6.8 18.1 1.8 6.5 18.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5401) TMPIT PF07851.13 gi|261403725|ref|YP_003247949.1| - 4.5 6.4 12.1 5 6.3 12.1 1.0 1 0 0 1 1 1 0 TMPIT-like protein Prismane PF03063.20 gi|261403725|ref|YP_003247949.1| - 4.6 5.8 8.3 4.9 5.7 8.3 1.0 1 0 0 1 1 1 0 Prismane/CO dehydrogenase family CobN-Mg_chel PF02514.16 gi|261403725|ref|YP_003247949.1| - 4.8 4.8 8.8 5.5 4.6 8.8 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF883 PF05957.13 gi|261403725|ref|YP_003247949.1| - 4.8 7.9 10.5 45 4.7 10.5 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) partial_CstF PF15861.5 gi|261403725|ref|YP_003247949.1| - 4.9 7.0 12.3 14 5.5 4.8 2.9 1 1 1 2 2 2 0 Partial cleavage stimulation factor domain PID PF00640.23 gi|261403725|ref|YP_003247949.1| - 6.2 6.9 8.2 1.4 9.0 4.1 1.7 1 1 1 2 2 2 0 Phosphotyrosine interaction domain (PTB/PID) Vfa1 PF08432.10 gi|261403725|ref|YP_003247949.1| - 7.1 6.9 12.9 8.3 6.7 12.9 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 HSP70 PF00012.20 gi|261403725|ref|YP_003247949.1| - 7.3 4.6 16.1 8.7 4.4 16.1 1.0 1 0 0 1 1 1 0 Hsp70 protein DUF531 PF04407.12 gi|261403726|ref|YP_003247950.1| - 2.2e-71 239.4 0.0 2.6e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF531) SPOUT_MTase_2 PF14419.6 gi|261403726|ref|YP_003247950.1| - 0.054 12.9 0.0 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP NucS PF01939.16 gi|261403727|ref|YP_003247951.1| - 6.7e-98 326.6 0.2 8e-98 326.4 0.2 1.0 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_4 PF14281.6 gi|261403727|ref|YP_003247951.1| - 0.00075 19.7 0.4 0.001 19.3 0.4 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_9 PF08011.11 gi|261403727|ref|YP_003247951.1| - 0.001 18.9 0.0 0.0076 16.1 0.0 2.3 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily NUMOD1 PF07453.13 gi|261403727|ref|YP_003247951.1| - 0.041 14.1 0.6 0.11 12.7 0.6 1.8 1 0 0 1 1 1 0 NUMOD1 domain YhcG_C PF06250.11 gi|261403727|ref|YP_003247951.1| - 0.052 13.4 0.1 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 YhcG PDDEXK nuclease domain HSDR_N_2 PF13588.6 gi|261403727|ref|YP_003247951.1| - 0.077 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0102 PF02021.17 gi|261403727|ref|YP_003247951.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Ham1p_like PF01725.16 gi|261403728|ref|YP_003247952.1| - 5.7e-50 169.8 0.1 6.4e-50 169.7 0.1 1.0 1 0 0 1 1 1 1 Ham1 family DUF986 PF06173.12 gi|261403729|ref|YP_003247953.1| - 6.7 6.8 17.4 2.3 8.3 0.7 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF986) CitG PF01874.16 gi|261403730|ref|YP_003247954.1| - 4.9e-67 226.5 0.0 5.5e-67 226.3 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF1400 PF07176.11 gi|261403730|ref|YP_003247954.1| - 0.14 12.5 0.3 3.6 7.9 0.0 2.7 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF1400) HGTP_anticodon PF03129.20 gi|261403731|ref|YP_003247955.1| - 1.9e-25 88.9 1.3 3.6e-25 88.0 0.2 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|261403731|ref|YP_003247955.1| - 1.5e-11 44.6 0.2 1.9e-09 37.8 0.2 2.6 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Plectin PF00681.20 gi|261403731|ref|YP_003247955.1| - 0.02 14.7 0.0 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 Plectin repeat Zn_ribbon_SprT PF17283.2 gi|261403731|ref|YP_003247955.1| - 0.11 12.4 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Rad50_zn_hook PF04423.14 gi|261403731|ref|YP_003247955.1| - 0.18 11.6 0.2 0.18 11.6 0.2 3.1 3 0 0 3 3 3 0 Rad50 zinc hook motif tRNA-synt_2 PF00152.20 gi|261403731|ref|YP_003247955.1| - 2.4 7.1 12.2 5.6 5.9 0.0 3.1 3 1 0 3 3 3 0 tRNA synthetases class II (D, K and N) HTH_5 PF01022.20 gi|261403732|ref|YP_003247956.1| - 1.7e-16 59.8 0.1 2.4e-16 59.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|261403732|ref|YP_003247956.1| - 1.4e-11 44.3 0.0 2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|261403732|ref|YP_003247956.1| - 7.8e-08 32.1 0.3 1.1e-07 31.6 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|261403732|ref|YP_003247956.1| - 2.7e-07 30.1 1.0 2.2e-06 27.1 1.0 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|261403732|ref|YP_003247956.1| - 2.2e-06 27.5 0.1 3.6e-06 26.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|261403732|ref|YP_003247956.1| - 5e-06 26.3 0.1 6e-06 26.1 0.1 1.1 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|261403732|ref|YP_003247956.1| - 8.3e-06 25.7 0.8 3.1e-05 23.9 0.8 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|261403732|ref|YP_003247956.1| - 9.2e-06 25.5 0.0 1.5e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|261403732|ref|YP_003247956.1| - 4.3e-05 23.2 0.0 6.1e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain Mga PF05043.13 gi|261403732|ref|YP_003247956.1| - 0.0019 18.8 0.0 0.0028 18.2 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_34 PF13601.6 gi|261403732|ref|YP_003247956.1| - 0.002 18.3 0.1 0.0027 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|261403732|ref|YP_003247956.1| - 0.003 17.9 0.0 0.0045 17.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_41 PF14502.6 gi|261403732|ref|YP_003247956.1| - 0.0048 16.5 0.0 0.0097 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|261403732|ref|YP_003247956.1| - 0.014 15.2 0.1 0.017 15.0 0.1 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_CodY PF08222.11 gi|261403732|ref|YP_003247956.1| - 0.018 14.6 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_10 PF04967.12 gi|261403732|ref|YP_003247956.1| - 0.021 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.6 gi|261403732|ref|YP_003247956.1| - 0.021 14.8 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|261403732|ref|YP_003247956.1| - 0.022 14.6 0.1 0.049 13.5 0.1 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_40 PF14493.6 gi|261403732|ref|YP_003247956.1| - 0.022 15.2 0.1 0.028 14.9 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|261403732|ref|YP_003247956.1| - 0.029 14.0 0.1 0.049 13.3 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_30 PF13556.6 gi|261403732|ref|YP_003247956.1| - 0.049 13.4 0.0 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain IF2_N PF04760.15 gi|261403732|ref|YP_003247956.1| - 0.053 13.4 0.4 0.66 9.8 0.1 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region BLACT_WH PF17778.1 gi|261403732|ref|YP_003247956.1| - 0.078 13.0 0.4 0.16 12.0 0.1 1.7 2 0 0 2 2 1 0 Beta-lactamase associated winged helix domain HTH_Crp_2 PF13545.6 gi|261403732|ref|YP_003247956.1| - 0.09 12.8 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|261403732|ref|YP_003247956.1| - 0.15 12.2 0.0 0.18 11.9 0.0 1.1 1 0 0 1 1 1 0 DprA winged helix domain AgrB PF04647.15 gi|261403733|ref|YP_003247957.1| - 0.00069 19.0 0.1 0.00088 18.6 0.1 1.1 1 0 0 1 1 1 1 Accessory gene regulator B TssO PF17561.2 gi|261403733|ref|YP_003247957.1| - 0.0033 17.6 0.3 0.0038 17.3 0.3 1.0 1 0 0 1 1 1 1 Type VI secretion system, TssO MscL PF01741.18 gi|261403733|ref|YP_003247957.1| - 0.0047 17.2 0.1 0.0053 17.1 0.1 1.1 1 0 0 1 1 1 1 Large-conductance mechanosensitive channel, MscL SCFA_trans PF02667.14 gi|261403733|ref|YP_003247957.1| - 0.012 14.6 0.3 0.012 14.6 0.3 1.0 1 0 0 1 1 1 0 Short chain fatty acid transporter Snapin_Pallidin PF14712.6 gi|261403733|ref|YP_003247957.1| - 0.016 15.6 0.4 0.02 15.3 0.4 1.1 1 0 0 1 1 1 0 Snapin/Pallidin Choline_kin_N PF04428.14 gi|261403733|ref|YP_003247957.1| - 0.018 14.7 0.6 0.024 14.3 0.6 1.4 1 0 0 1 1 1 0 Choline kinase N terminus DUF3382 PF11862.8 gi|261403733|ref|YP_003247957.1| - 0.019 15.2 0.0 0.021 15.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) FPN1 PF06963.12 gi|261403733|ref|YP_003247957.1| - 0.021 13.4 0.1 0.024 13.2 0.1 1.0 1 0 0 1 1 1 0 Ferroportin1 (FPN1) MFS_Mycoplasma PF07672.13 gi|261403733|ref|YP_003247957.1| - 0.021 14.1 0.5 0.023 14.0 0.5 1.0 1 0 0 1 1 1 0 Mycoplasma MFS transporter DUF1772 PF08592.11 gi|261403733|ref|YP_003247957.1| - 0.12 12.7 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF1664 PF07889.12 gi|261403733|ref|YP_003247957.1| - 0.14 12.2 0.4 0.14 12.2 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF919 PF06034.11 gi|261403733|ref|YP_003247957.1| - 0.14 12.0 3.0 0.19 11.6 3.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF919) DUF2615 PF11027.8 gi|261403733|ref|YP_003247957.1| - 0.23 11.6 0.0 0.26 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) ASFV_J13L PF05568.11 gi|261403733|ref|YP_003247957.1| - 0.24 11.2 0.4 0.24 11.1 0.4 1.1 1 0 0 1 1 1 0 African swine fever virus J13L protein PmbA_TldD PF01523.16 gi|261403735|ref|YP_003247959.1| - 2e-54 185.4 2.4 2.6e-54 185.0 2.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Enolase_C PF00113.22 gi|261403736|ref|YP_003247960.1| - 1.3e-132 441.5 0.1 1.7e-132 441.2 0.1 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|261403736|ref|YP_003247960.1| - 4.4e-58 195.1 0.1 6.9e-58 194.5 0.1 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|261403736|ref|YP_003247960.1| - 8.6e-11 41.8 0.0 1.3e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|261403736|ref|YP_003247960.1| - 0.012 14.7 0.1 0.047 12.8 0.0 1.9 2 0 0 2 2 2 0 Methylaspartate ammonia-lyase C-terminus HupF_HypC PF01455.18 gi|261403737|ref|YP_003247961.1| - 3.7e-21 75.0 0.1 4.3e-21 74.8 0.1 1.0 1 0 0 1 1 1 1 HupF/HypC family DUF3006 PF11213.8 gi|261403737|ref|YP_003247961.1| - 0.065 13.5 0.4 0.083 13.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3006) Fer4_7 PF12838.7 gi|261403738|ref|YP_003247962.1| - 3.8e-09 37.0 12.4 6.5e-09 36.2 12.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261403738|ref|YP_003247962.1| - 3.8e-09 36.0 18.0 5.4e-08 32.3 5.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403738|ref|YP_003247962.1| - 8.3e-09 35.1 16.4 8.6e-05 22.4 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261403738|ref|YP_003247962.1| - 3.2e-07 30.4 10.8 4e-07 30.1 10.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403738|ref|YP_003247962.1| - 9.1e-07 28.9 12.5 1.7e-06 28.1 12.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403738|ref|YP_003247962.1| - 2e-06 27.8 10.6 2.5e-06 27.5 10.6 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403738|ref|YP_003247962.1| - 3.1e-06 28.0 10.2 0.00056 20.8 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261403738|ref|YP_003247962.1| - 5e-05 23.2 14.9 0.0028 17.7 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261403738|ref|YP_003247962.1| - 6.1e-05 23.5 8.1 0.0078 16.7 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403738|ref|YP_003247962.1| - 0.00083 19.7 13.7 0.0063 16.9 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|261403738|ref|YP_003247962.1| - 0.013 16.3 5.4 0.013 16.3 5.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403738|ref|YP_003247962.1| - 0.024 15.1 2.7 0.024 15.1 2.7 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261403738|ref|YP_003247962.1| - 0.042 14.6 12.5 0.046 14.5 1.4 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|261403738|ref|YP_003247962.1| - 0.083 13.4 13.7 0.26 11.8 2.3 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|261403738|ref|YP_003247962.1| - 0.23 11.7 11.3 0.27 11.5 3.8 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Enolase_N PF03952.16 gi|261403739|ref|YP_003247963.1| - 2.5e-05 24.5 0.0 5.6e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain RNA_pol_Rpb6 PF01192.22 gi|261403740|ref|YP_003247964.1| - 2e-10 40.4 0.1 2.2e-10 40.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|261403741|ref|YP_003247965.1| - 2.9e-26 91.5 0.4 3.4e-26 91.3 0.4 1.1 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|261403741|ref|YP_003247965.1| - 0.0015 18.8 0.1 0.0018 18.5 0.1 1.2 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) EntA_Immun PF08951.10 gi|261403741|ref|YP_003247965.1| - 0.18 12.2 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 Enterocin A Immunity Ribosomal_S9 PF00380.19 gi|261403742|ref|YP_003247966.1| - 2.7e-27 95.7 0.6 3.1e-27 95.5 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|261403743|ref|YP_003247967.1| - 2e-14 53.9 0.9 6.2e-10 39.4 0.2 2.1 1 1 1 2 2 2 2 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|261403744|ref|YP_003247968.1| - 1.6e-14 53.8 0.2 1.8e-14 53.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|261403744|ref|YP_003247968.1| - 1.3e-08 35.5 1.2 2.4e-08 34.7 1.2 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|261403745|ref|YP_003247969.1| - 5e-25 88.1 0.0 1.8e-23 83.1 0.0 2.3 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|261403745|ref|YP_003247969.1| - 2.3e-15 55.8 0.0 3.3e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L_2 PF13656.6 gi|261403745|ref|YP_003247969.1| - 0.15 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|261403746|ref|YP_003247970.1| - 3.5e-44 149.7 1.1 4.6e-44 149.3 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|261403747|ref|YP_003247971.1| - 4.5e-18 64.7 3.9 9.8e-17 60.4 0.2 2.5 2 0 0 2 2 2 2 S4 domain Ribosomal_S4 PF00163.19 gi|261403747|ref|YP_003247971.1| - 0.00078 20.3 5.0 0.0015 19.4 3.3 2.2 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|261403748|ref|YP_003247972.1| - 5.2e-44 149.7 0.3 6.1e-44 149.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|261403748|ref|YP_003247972.1| - 0.0045 15.8 0.0 0.0059 15.4 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.14 gi|261403748|ref|YP_003247972.1| - 0.0063 16.5 0.0 0.0089 16.0 0.0 1.2 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Arm-DNA-bind_4 PF14657.6 gi|261403748|ref|YP_003247972.1| - 0.022 14.5 0.2 2.8 7.7 0.0 2.6 2 0 0 2 2 2 0 Arm DNA-binding domain HHH_5 PF14520.6 gi|261403748|ref|YP_003247972.1| - 0.04 14.5 0.7 0.084 13.5 0.2 1.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH PF00633.23 gi|261403748|ref|YP_003247972.1| - 0.12 12.3 0.9 0.42 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|261403748|ref|YP_003247972.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif Tipalpha PF16753.5 gi|261403748|ref|YP_003247972.1| - 0.14 11.9 0.4 0.9 9.4 0.0 2.1 2 1 1 3 3 3 0 TNF-alpha-Inducing protein of Helicobacter CBS PF00571.28 gi|261403749|ref|YP_003247973.1| - 2.3e-26 92.0 8.6 2e-15 56.9 0.4 2.7 3 0 0 3 3 3 2 CBS domain ParBc PF02195.18 gi|261403749|ref|YP_003247973.1| - 2.2e-13 50.3 0.3 2.7e-12 46.8 0.1 2.4 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|261403749|ref|YP_003247973.1| - 0.00043 20.4 0.4 0.0017 18.5 0.1 2.1 2 1 0 2 2 2 1 Putative ParB-like nuclease TusA PF01206.17 gi|261403749|ref|YP_003247973.1| - 0.0047 16.7 0.3 0.59 10.0 0.0 2.9 3 0 0 3 3 3 1 Sulfurtransferase TusA sCache_3_2 PF17203.4 gi|261403749|ref|YP_003247973.1| - 0.04 14.1 0.1 6.9 6.8 0.0 2.6 2 1 0 2 2 2 0 Single cache domain 3 DEAD PF00270.29 gi|261403749|ref|YP_003247973.1| - 0.11 12.3 0.3 0.17 11.6 0.3 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase CGI-121 PF08617.10 gi|261403750|ref|YP_003247974.1| - 1.6e-10 41.3 0.5 2.1e-10 41.0 0.5 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 EF-G-binding_N PF07299.11 gi|261403750|ref|YP_003247974.1| - 0.0012 19.3 0.2 0.018 15.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G-binding protein, N-terminal ArgJ PF01960.18 gi|261403751|ref|YP_003247975.1| - 3.8e-142 473.5 9.0 4.5e-142 473.2 9.0 1.0 1 0 0 1 1 1 1 ArgJ family Hit1_C PF18268.1 gi|261403751|ref|YP_003247975.1| - 0.028 14.5 0.1 1.4 9.2 0.0 2.5 2 0 0 2 2 2 0 Hit1 C-terminal Bcl-2 PF00452.19 gi|261403751|ref|YP_003247975.1| - 0.053 14.2 0.1 0.98 10.1 0.0 2.5 1 1 1 2 2 2 0 Apoptosis regulator proteins, Bcl-2 family Clusterin PF01093.17 gi|261403751|ref|YP_003247975.1| - 0.053 12.6 0.1 0.1 11.6 0.1 1.4 1 0 0 1 1 1 0 Clusterin DUF4013 PF13197.6 gi|261403752|ref|YP_003247976.1| - 1e-07 31.9 20.2 1e-07 31.9 20.2 3.4 3 1 0 3 3 3 2 Protein of unknown function (DUF4013) NosD PF05048.13 gi|261403754|ref|YP_003247978.1| - 3.2e-07 29.9 71.1 0.0067 15.7 22.6 3.2 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) SVM_signal PF12113.8 gi|261403754|ref|YP_003247978.1| - 0.01 15.7 3.8 0.042 13.7 3.8 2.1 1 0 0 1 1 1 0 SVM protein signal sequence DUF1082 PF06449.11 gi|261403754|ref|YP_003247978.1| - 0.019 14.8 4.3 8.8 6.3 0.1 3.8 3 0 0 3 3 3 0 Mitochondrial domain of unknown function (DUF1082) T3SSipB PF16535.5 gi|261403755|ref|YP_003247979.1| - 0.0028 18.1 0.5 0.0046 17.4 0.5 1.3 1 0 0 1 1 1 1 Type III cell invasion protein SipB DUF4337 PF14235.6 gi|261403755|ref|YP_003247979.1| - 0.11 12.6 6.6 2.3 8.3 6.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) Snapin_Pallidin PF14712.6 gi|261403755|ref|YP_003247979.1| - 0.15 12.5 7.1 0.14 12.6 1.9 2.3 2 0 0 2 2 2 0 Snapin/Pallidin DUF4407 PF14362.6 gi|261403755|ref|YP_003247979.1| - 0.17 11.2 0.4 0.24 10.7 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) OmpH PF03938.14 gi|261403755|ref|YP_003247979.1| - 0.2 12.0 9.0 0.44 10.9 9.0 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) MscS_porin PF12795.7 gi|261403755|ref|YP_003247979.1| - 0.4 10.2 9.1 0.58 9.7 9.1 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain PEPcase PF00311.17 gi|261403755|ref|YP_003247979.1| - 0.42 8.6 3.0 0.58 8.2 3.0 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase BLOC1_2 PF10046.9 gi|261403755|ref|YP_003247979.1| - 0.45 10.8 9.3 0.31 11.3 2.0 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlxA PF14282.6 gi|261403755|ref|YP_003247979.1| - 0.63 10.1 6.6 1.4 9.0 6.5 1.5 1 1 0 1 1 1 0 FlxA-like protein Fib_alpha PF08702.10 gi|261403755|ref|YP_003247979.1| - 0.65 10.2 10.5 1.1 9.4 10.3 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family FapA PF03961.13 gi|261403755|ref|YP_003247979.1| - 0.77 8.3 11.3 1.4 7.5 11.3 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A EMP24_GP25L PF01105.24 gi|261403755|ref|YP_003247979.1| - 1.5 8.7 13.5 0.67 9.9 9.1 2.5 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD RRP36 PF06102.12 gi|261403755|ref|YP_003247979.1| - 6.4 6.7 10.5 9.3 6.2 10.5 1.2 1 0 0 1 1 1 0 rRNA biogenesis protein RRP36 DUF166 PF02593.14 gi|261403757|ref|YP_003247981.1| - 2.2e-62 210.5 0.2 2.5e-62 210.3 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function TrkA_N PF02254.18 gi|261403757|ref|YP_003247981.1| - 0.11 12.7 0.0 0.67 10.2 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain Radical_SAM PF04055.21 gi|261403758|ref|YP_003247982.1| - 1.2e-22 81.0 0.5 3.3e-22 79.6 0.5 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|261403758|ref|YP_003247982.1| - 5.2e-13 49.5 0.0 1.7e-12 47.8 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|261403758|ref|YP_003247982.1| - 2.4e-10 40.6 0.1 6.2e-10 39.2 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|261403758|ref|YP_003247982.1| - 0.00026 21.4 1.3 0.00082 19.8 1.3 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain MSP7_C PF12948.7 gi|261403758|ref|YP_003247982.1| - 0.00074 20.2 2.1 0.0041 17.8 2.1 2.3 1 0 0 1 1 1 1 MSP7-like protein C-terminal domain Pneumovirus_M2 PF06436.11 gi|261403758|ref|YP_003247982.1| - 0.05 13.1 2.3 0.078 12.5 0.1 2.2 2 0 0 2 2 2 0 Pneumovirus matrix protein 2 (M2) QRPTase_C PF01729.19 gi|261403758|ref|YP_003247982.1| - 0.086 12.6 0.1 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain OsmC PF02566.19 gi|261403759|ref|YP_003247983.1| - 5.3e-15 55.7 0.0 9.5e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 OsmC-like protein Fer4_21 PF14697.6 gi|261403760|ref|YP_003247984.1| - 2.2e-08 34.1 8.2 3.1e-08 33.6 8.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403760|ref|YP_003247984.1| - 7.2e-06 26.5 11.9 1.6e-05 25.4 12.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|261403760|ref|YP_003247984.1| - 1.8e-05 24.3 18.9 0.00016 21.3 5.5 2.8 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403760|ref|YP_003247984.1| - 6.6e-05 22.8 14.9 0.00012 22.0 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261403760|ref|YP_003247984.1| - 0.00016 22.5 6.4 0.021 15.8 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|261403760|ref|YP_003247984.1| - 0.00022 21.1 2.8 0.00022 21.1 2.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|261403760|ref|YP_003247984.1| - 0.00027 21.7 3.8 0.023 15.5 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403760|ref|YP_003247984.1| - 0.00032 20.8 20.4 0.0027 17.8 10.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403760|ref|YP_003247984.1| - 0.00053 20.0 10.6 0.065 13.4 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403760|ref|YP_003247984.1| - 0.0012 19.2 12.4 0.0021 18.4 3.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261403760|ref|YP_003247984.1| - 0.0028 18.2 11.9 0.54 10.8 11.9 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|261403760|ref|YP_003247984.1| - 0.028 15.0 8.9 0.072 13.6 0.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261403760|ref|YP_003247984.1| - 0.1 13.4 7.3 1.2 9.9 7.3 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|261403760|ref|YP_003247984.1| - 0.13 12.8 10.9 2.6 8.6 11.0 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain SelA PF03841.13 gi|261403761|ref|YP_003247985.1| - 2.5e-06 26.7 0.1 4.4e-06 25.9 0.1 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|261403761|ref|YP_003247985.1| - 4e-06 25.6 0.0 5.5e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.19 gi|261403761|ref|YP_003247985.1| - 8.8e-05 21.3 0.0 0.00013 20.8 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_5 PF00266.19 gi|261403761|ref|YP_003247985.1| - 0.00011 21.2 0.0 0.00015 20.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|261403761|ref|YP_003247985.1| - 0.00035 19.2 0.0 0.00051 18.7 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.21 gi|261403761|ref|YP_003247985.1| - 0.00079 18.7 0.0 0.0016 17.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II NRD1_2 PF01995.16 gi|261403762|ref|YP_003247986.1| - 1.7e-125 417.1 4.8 1.1e-65 221.3 0.5 2.2 2 0 0 2 2 2 2 NrpR regulatory domains NRD1 and 2 HTH_12 PF08461.10 gi|261403762|ref|YP_003247986.1| - 1.1e-29 102.1 2.8 2.4e-29 101.0 2.8 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_21 PF13276.6 gi|261403762|ref|YP_003247986.1| - 0.11 12.7 1.0 0.61 10.3 0.1 2.6 2 0 0 2 2 2 0 HTH-like domain GatB_N PF02934.15 gi|261403763|ref|YP_003247987.1| - 4.9e-92 308.2 0.0 7.6e-92 307.6 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|261403763|ref|YP_003247987.1| - 3.8e-49 166.4 8.4 3.8e-49 166.4 8.4 2.0 2 0 0 2 2 2 1 GatB domain SAPIS-gp6 PF16722.5 gi|261403763|ref|YP_003247987.1| - 0.22 12.0 5.1 1.2 9.6 0.6 2.7 2 0 0 2 2 2 0 Pathogenicity island protein gp6 in Staphylococcus ALS_ss_C PF10369.9 gi|261403764|ref|YP_003247988.1| - 1.3e-29 102.2 0.4 6.8e-28 96.7 0.0 2.2 2 0 0 2 2 2 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|261403764|ref|YP_003247988.1| - 2.2e-21 75.4 0.3 3.9e-21 74.6 0.3 1.4 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|261403764|ref|YP_003247988.1| - 4e-16 58.5 0.3 6.7e-16 57.8 0.3 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|261403764|ref|YP_003247988.1| - 1.3e-06 28.8 0.8 2.1e-06 28.2 0.8 1.3 1 0 0 1 1 1 1 ACT domain Acylphosphatase PF00708.18 gi|261403764|ref|YP_003247988.1| - 0.0014 19.0 0.5 0.1 13.0 0.3 2.2 2 0 0 2 2 2 1 Acylphosphatase Saccharop_dh_N PF04455.12 gi|261403764|ref|YP_003247988.1| - 0.0016 18.8 0.2 0.0031 17.9 0.1 1.6 1 1 1 2 2 2 1 LOR/SDH bifunctional enzyme conserved region LytR_C PF13399.6 gi|261403764|ref|YP_003247988.1| - 0.055 14.5 0.0 0.086 13.8 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator Beta-Casp PF10996.8 gi|261403765|ref|YP_003247989.1| - 3e-23 82.2 0.0 7.1e-23 81.0 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.27 gi|261403765|ref|YP_003247989.1| - 5.4e-15 55.9 0.0 3.3e-14 53.4 0.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|261403765|ref|YP_003247989.1| - 6.2e-14 51.9 0.2 2e-13 50.2 0.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|261403765|ref|YP_003247989.1| - 2e-13 50.0 0.1 8.3e-13 48.1 0.0 2.1 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|261403765|ref|YP_003247989.1| - 3.4e-10 39.8 0.0 5.4e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|261403765|ref|YP_003247989.1| - 4e-07 30.1 0.0 1.1e-06 28.6 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Robl_LC7 PF03259.17 gi|261403766|ref|YP_003247990.1| - 2.1e-10 40.2 0.0 3.7e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Roadblock/LC7 domain LEDGF PF11467.8 gi|261403766|ref|YP_003247990.1| - 0.031 13.9 1.9 0.033 13.8 0.2 1.8 2 0 0 2 2 2 0 Lens epithelium-derived growth factor (LEDGF) Phosphodiest PF01663.22 gi|261403766|ref|YP_003247990.1| - 0.087 12.4 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2226 PF09987.9 gi|261403767|ref|YP_003247991.1| - 3.8e-87 292.4 40.8 5.2e-85 285.4 40.8 3.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) AIRC PF00731.20 gi|261403768|ref|YP_003247992.1| - 1.2e-19 70.4 2.3 2e-19 69.6 2.3 1.3 1 0 0 1 1 1 1 AIR carboxylase tRNA_deacylase PF04414.12 gi|261403769|ref|YP_003247993.1| - 3.9e-66 222.5 0.0 5.1e-66 222.1 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase MoCF_biosynth PF00994.24 gi|261403770|ref|YP_003247994.1| - 7.7e-29 100.2 0.2 9.4e-29 99.9 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain RE_ApaLI PF09499.10 gi|261403770|ref|YP_003247994.1| - 0.048 13.4 0.1 0.05 13.3 0.1 1.3 1 0 0 1 1 1 0 ApaLI-like restriction endonuclease CBFD_NFYB_HMF PF00808.23 gi|261403771|ref|YP_003247995.1| - 7.5e-21 74.2 3.2 8.2e-21 74.1 3.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|261403771|ref|YP_003247995.1| - 6.8e-13 49.1 1.2 7.4e-13 49.0 1.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|261403771|ref|YP_003247995.1| - 1e-07 32.0 0.9 1.1e-07 31.9 0.9 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|261403771|ref|YP_003247995.1| - 9.1e-07 29.2 0.2 1e-06 29.0 0.2 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|261403771|ref|YP_003247995.1| - 1.3e-05 25.6 0.3 1.5e-05 25.4 0.3 1.2 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-31kDa PF02291.15 gi|261403771|ref|YP_003247995.1| - 2.2e-05 24.5 0.1 2.4e-05 24.4 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|261403771|ref|YP_003247995.1| - 2.9e-05 24.0 0.0 3.5e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T_C PF15511.6 gi|261403771|ref|YP_003247995.1| - 3e-05 24.1 0.2 3.2e-05 24.0 0.2 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|261403771|ref|YP_003247995.1| - 0.00039 20.4 0.1 0.00043 20.3 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|261403771|ref|YP_003247995.1| - 0.0022 18.1 1.1 0.0024 18.0 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) AAA_31 PF13614.6 gi|261403772|ref|YP_003247996.1| - 3.4e-27 95.5 0.3 5.5e-27 94.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|261403772|ref|YP_003247996.1| - 8.4e-23 80.8 0.3 1.2e-22 80.3 0.3 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|261403772|ref|YP_003247996.1| - 4.3e-20 72.2 3.5 2.5e-19 69.7 3.5 2.2 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|261403772|ref|YP_003247996.1| - 3.1e-16 59.6 0.0 6.2e-16 58.6 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|261403772|ref|YP_003247996.1| - 3.2e-14 53.0 1.7 8.8e-07 28.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|261403772|ref|YP_003247996.1| - 1.6e-10 40.7 1.0 4.5e-10 39.3 1.0 1.7 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|261403772|ref|YP_003247996.1| - 1.2e-09 37.8 5.4 1.1e-08 34.7 3.9 2.5 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|261403772|ref|YP_003247996.1| - 0.00022 21.1 5.5 0.0022 17.9 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|261403772|ref|YP_003247996.1| - 0.00052 19.7 0.0 0.0022 17.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|261403772|ref|YP_003247996.1| - 0.0011 18.3 2.2 0.0056 16.0 0.7 2.1 2 0 0 2 2 2 1 VirC1 protein SRP54 PF00448.22 gi|261403772|ref|YP_003247996.1| - 0.0045 16.6 1.1 0.0045 16.6 1.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|261403772|ref|YP_003247996.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|261403772|ref|YP_003247996.1| - 0.019 14.8 0.2 0.042 13.7 0.2 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|261403772|ref|YP_003247996.1| - 0.067 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase MS_channel PF00924.18 gi|261403773|ref|YP_003247997.1| - 9.4e-69 231.1 0.3 9.4e-69 231.1 0.3 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|261403773|ref|YP_003247997.1| - 0.00025 20.9 2.1 0.00025 20.9 2.1 3.0 3 0 0 3 3 3 1 Conserved TM helix Voltage_CLC PF00654.20 gi|261403773|ref|YP_003247997.1| - 0.39 9.9 5.3 0.92 8.7 5.4 1.7 1 1 0 1 1 1 0 Voltage gated chloride channel DNA_ligase_A_M PF01068.21 gi|261403774|ref|YP_003247998.1| - 9.4e-66 221.3 1.5 1.7e-65 220.5 1.5 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|261403774|ref|YP_003247998.1| - 9.3e-38 130.3 3.7 1.1e-36 126.8 1.1 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|261403774|ref|YP_003247998.1| - 2.7e-17 63.2 0.0 2.8e-16 59.9 0.0 2.5 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 gi|261403774|ref|YP_003247998.1| - 0.00023 21.0 0.3 0.00047 20.0 0.3 1.5 1 0 0 1 1 1 1 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.6 gi|261403774|ref|YP_003247998.1| - 0.012 15.6 0.1 0.11 12.5 0.1 2.5 1 1 0 1 1 1 0 DNA ligase OB-like domain PCMT PF01135.19 gi|261403775|ref|YP_003247999.1| - 1.1e-83 280.1 0.1 1.3e-83 279.9 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|261403775|ref|YP_003247999.1| - 6.4e-10 39.0 0.0 1.2e-09 38.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|261403775|ref|YP_003247999.1| - 3.3e-06 26.4 0.0 4.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|261403775|ref|YP_003247999.1| - 9.9e-05 21.5 0.0 0.00025 20.2 0.0 1.6 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.17 gi|261403775|ref|YP_003247999.1| - 0.0001 21.5 0.0 0.00014 21.1 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|261403775|ref|YP_003247999.1| - 0.00077 19.2 0.0 0.0023 17.6 0.0 1.7 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_25 PF13649.6 gi|261403775|ref|YP_003247999.1| - 0.00085 20.0 0.0 0.0017 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|261403775|ref|YP_003247999.1| - 0.0011 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|261403775|ref|YP_003247999.1| - 0.0052 16.5 0.0 0.0073 16.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|261403775|ref|YP_003247999.1| - 0.018 16.0 0.0 0.031 15.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|261403775|ref|YP_003247999.1| - 0.038 13.5 0.0 0.076 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase Ubie_methyltran PF01209.18 gi|261403775|ref|YP_003247999.1| - 0.053 12.8 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|261403775|ref|YP_003247999.1| - 0.091 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|261403775|ref|YP_003247999.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|261403775|ref|YP_003247999.1| - 0.19 11.4 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) TFX_C PF14601.6 gi|261403776|ref|YP_003248000.1| - 4.7e-30 103.4 0.6 7.3e-30 102.8 0.6 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|261403776|ref|YP_003248000.1| - 2.1e-09 36.8 0.8 4.2e-09 35.8 0.8 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|261403776|ref|YP_003248000.1| - 4.4e-07 29.8 3.3 1.3e-06 28.3 1.2 2.4 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|261403776|ref|YP_003248000.1| - 4.2e-06 26.7 0.4 9.6e-06 25.6 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix GerE PF00196.19 gi|261403776|ref|YP_003248000.1| - 0.00015 21.3 1.9 0.00023 20.6 0.7 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|261403776|ref|YP_003248000.1| - 0.00068 19.3 0.1 0.0011 18.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|261403776|ref|YP_003248000.1| - 0.00093 18.8 0.1 0.0018 17.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|261403776|ref|YP_003248000.1| - 0.0011 18.7 0.1 0.0027 17.5 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.6 gi|261403776|ref|YP_003248000.1| - 0.0026 17.7 0.1 0.0049 16.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|261403776|ref|YP_003248000.1| - 0.005 17.1 0.0 0.0089 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Pex14_N PF04695.13 gi|261403776|ref|YP_003248000.1| - 0.0052 17.5 0.2 0.0071 17.0 0.2 1.2 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_Crp_2 PF13545.6 gi|261403776|ref|YP_003248000.1| - 0.0056 16.6 0.0 0.0099 15.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|261403776|ref|YP_003248000.1| - 0.013 15.6 0.1 0.041 14.0 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase KorB PF08535.10 gi|261403776|ref|YP_003248000.1| - 0.014 15.4 0.2 0.038 14.0 0.1 1.8 2 0 0 2 2 2 0 KorB domain KORA PF16509.5 gi|261403776|ref|YP_003248000.1| - 0.016 15.5 0.1 0.026 14.8 0.1 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor RepB PF07506.11 gi|261403776|ref|YP_003248000.1| - 0.018 15.1 0.1 0.025 14.7 0.1 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein Phage_portal PF04860.12 gi|261403776|ref|YP_003248000.1| - 0.019 14.2 0.2 0.023 13.9 0.2 1.1 1 0 0 1 1 1 0 Phage portal protein Trp_repressor PF01371.19 gi|261403776|ref|YP_003248000.1| - 0.024 14.7 0.6 0.043 14.0 0.6 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_28 PF13518.6 gi|261403776|ref|YP_003248000.1| - 0.032 14.4 0.1 0.058 13.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|261403776|ref|YP_003248000.1| - 0.034 14.2 0.1 0.05 13.6 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix MarR_2 PF12802.7 gi|261403776|ref|YP_003248000.1| - 0.036 13.9 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family UPF0122 PF04297.14 gi|261403776|ref|YP_003248000.1| - 0.048 13.9 0.9 0.062 13.5 0.3 1.5 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.22 gi|261403776|ref|YP_003248000.1| - 0.07 13.1 0.1 0.15 12.0 0.1 1.6 1 0 0 1 1 1 0 MarR family Sigma70_ECF PF07638.11 gi|261403776|ref|YP_003248000.1| - 0.13 12.2 0.5 0.19 11.6 0.2 1.4 2 0 0 2 2 1 0 ECF sigma factor eRF1_1 PF03463.15 gi|261403777|ref|YP_003248001.1| - 3.5e-31 107.9 0.7 6.7e-31 107.0 0.7 1.5 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|261403777|ref|YP_003248001.1| - 3.2e-27 95.3 2.0 4.5e-27 94.8 0.6 2.1 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|261403777|ref|YP_003248001.1| - 1.4e-12 48.1 1.8 1.8e-12 47.7 0.5 1.9 2 0 0 2 2 2 1 eRF1 domain 2 DUF2529 PF10740.9 gi|261403777|ref|YP_003248001.1| - 0.015 15.0 0.2 0.053 13.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF2529) SpoU_sub_bind PF08032.12 gi|261403777|ref|YP_003248001.1| - 0.017 15.4 4.0 0.03 14.6 0.0 2.8 2 2 1 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding Sigma70_r1_1 PF03979.14 gi|261403777|ref|YP_003248001.1| - 0.022 14.8 2.7 0.08 13.0 0.4 2.9 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 baeRF_family10 PF18854.1 gi|261403777|ref|YP_003248001.1| - 0.14 12.4 0.0 3.5 7.9 0.0 2.5 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 PTPS_related PF10131.9 gi|261403777|ref|YP_003248001.1| - 0.24 9.7 0.2 1.9 6.7 0.0 2.1 2 1 0 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein NTP_transf_2 PF01909.23 gi|261403777|ref|YP_003248001.1| - 3.6 7.9 8.3 1.1 9.6 0.1 3.0 3 1 0 3 3 3 0 Nucleotidyltransferase domain Translin PF01997.16 gi|261403778|ref|YP_003248002.1| - 1.8e-12 47.7 2.8 3.1e-11 43.7 2.8 2.1 1 1 0 1 1 1 1 Translin family NAS PF03059.16 gi|261403778|ref|YP_003248002.1| - 0.026 13.8 0.1 0.046 13.1 0.1 1.3 1 0 0 1 1 1 0 Nicotianamine synthase protein CTNNBL PF08216.11 gi|261403778|ref|YP_003248002.1| - 0.056 13.6 0.3 0.11 12.7 0.3 1.5 1 0 0 1 1 1 0 Catenin-beta-like, Arm-motif containing nuclear EF-G-binding_N PF07299.11 gi|261403778|ref|YP_003248002.1| - 0.073 13.6 0.8 0.86 10.2 0.3 2.7 2 1 1 3 3 3 0 Elongation factor G-binding protein, N-terminal Csm2_III-A PF03750.13 gi|261403778|ref|YP_003248002.1| - 0.28 12.0 4.4 0.78 10.6 0.3 2.4 1 1 1 2 2 2 0 Csm2 Type III-A Ribosomal_L3 PF00297.22 gi|261403779|ref|YP_003248003.1| - 7.1e-92 308.2 0.8 1.9e-91 306.8 0.8 1.6 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|261403780|ref|YP_003248004.1| - 6.6e-45 153.2 0.5 7.6e-45 153.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|261403781|ref|YP_003248005.1| - 1.4e-17 63.8 12.0 1.1e-16 60.9 12.0 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|261403781|ref|YP_003248005.1| - 0.004 16.9 0.4 0.0051 16.6 0.4 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA Tap-RNA_bind PF09162.10 gi|261403781|ref|YP_003248005.1| - 0.0048 16.7 0.3 0.0068 16.2 0.3 1.3 1 0 0 1 1 1 1 Tap, RNA-binding HP0268 PF18618.1 gi|261403781|ref|YP_003248005.1| - 0.01 16.2 2.7 0.014 15.8 2.6 1.4 1 1 0 1 1 1 0 HP0268 Ribosomal_L2_C PF03947.18 gi|261403782|ref|YP_003248006.1| - 9.8e-46 155.1 1.6 1.6e-45 154.4 1.6 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|261403782|ref|YP_003248006.1| - 3e-20 72.0 0.0 1.6e-19 69.6 0.0 2.2 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|261403783|ref|YP_003248007.1| - 5.5e-32 109.5 0.1 1e-31 108.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 SLAC1 PF03595.17 gi|261403784|ref|YP_003248008.1| - 6.8e-68 229.3 53.8 7.6e-68 229.1 53.8 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Usp PF00582.26 gi|261403785|ref|YP_003248009.1| - 5.7e-33 114.4 1.3 8.6e-33 113.8 1.3 1.3 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.19 gi|261403785|ref|YP_003248009.1| - 0.018 15.1 0.0 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 B12 binding domain Oxidored_nitro PF00148.19 gi|261403785|ref|YP_003248009.1| - 0.045 12.5 0.1 0.054 12.2 0.1 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase DUF2203 PF09969.9 gi|261403785|ref|YP_003248009.1| - 0.066 13.9 0.5 0.099 13.4 0.5 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Histone_HNS PF00816.21 gi|261403785|ref|YP_003248009.1| - 0.1 13.4 1.5 0.18 12.7 1.4 1.6 1 1 0 1 1 1 0 H-NS histone family SAICAR_synt PF01259.18 gi|261403786|ref|YP_003248010.1| - 1.3e-64 218.2 0.6 1.6e-64 218.0 0.6 1.1 1 0 0 1 1 1 1 SAICAR synthetase PEPcase PF00311.17 gi|261403786|ref|YP_003248010.1| - 0.037 12.1 0.0 0.046 11.8 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase HHH_2 PF12826.7 gi|261403786|ref|YP_003248010.1| - 0.072 13.2 0.1 0.19 11.8 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif PurS PF02700.14 gi|261403787|ref|YP_003248011.1| - 8.8e-31 105.9 1.0 9.8e-31 105.8 1.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase SapB_1 PF05184.15 gi|261403787|ref|YP_003248011.1| - 0.02 14.9 1.5 0.049 13.7 1.5 1.6 1 0 0 1 1 1 0 Saposin-like type B, region 1 Flu_B_M2 PF04772.12 gi|261403787|ref|YP_003248011.1| - 0.045 14.0 0.4 0.078 13.2 0.4 1.6 1 1 0 1 1 1 0 Influenza B matrix protein 2 (BM2) HAD PF12710.7 gi|261403789|ref|YP_003248013.1| - 9.5e-25 88.1 0.0 1.2e-24 87.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|261403789|ref|YP_003248013.1| - 2e-20 74.0 4.0 2.7e-20 73.6 4.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|261403789|ref|YP_003248013.1| - 7.4e-15 55.5 6.9 8.2e-15 55.3 4.1 2.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|261403789|ref|YP_003248013.1| - 2.5e-14 53.6 2.1 4.1e-10 39.8 0.2 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|261403789|ref|YP_003248013.1| - 3.6e-11 42.9 0.5 2.4e-08 33.7 0.1 2.1 2 0 0 2 2 2 2 Putative Phosphatase AA_kinase PF00696.28 gi|261403789|ref|YP_003248013.1| - 0.0018 18.0 0.0 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 Amino acid kinase family S6PP PF05116.13 gi|261403789|ref|YP_003248013.1| - 0.0059 16.2 0.0 0.099 12.1 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase AFP_2 PF18815.1 gi|261403789|ref|YP_003248013.1| - 0.0097 16.1 0.2 0.022 15.0 0.2 1.6 1 0 0 1 1 1 1 Bacterial antifreeze protein repeat Hydrolase_like PF13242.6 gi|261403789|ref|YP_003248013.1| - 0.08 13.0 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Glycos_transf_3 PF00591.21 gi|261403790|ref|YP_003248014.1| - 9e-102 340.0 0.4 1.5e-101 339.3 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|261403790|ref|YP_003248014.1| - 1.5e-19 69.6 3.1 1.9e-19 69.3 1.3 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain ING PF12998.7 gi|261403791|ref|YP_003248015.1| - 0.025 15.2 3.5 0.037 14.6 3.5 1.3 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Sucrose_synth PF00862.19 gi|261403791|ref|YP_003248015.1| - 0.086 11.1 2.1 0.1 10.9 2.1 1.0 1 0 0 1 1 1 0 Sucrose synthase BLI1 PF17324.2 gi|261403791|ref|YP_003248015.1| - 0.13 13.0 8.4 0.14 12.8 8.4 1.1 1 0 0 1 1 1 0 BLOC-1 interactor 1 ThiP_synth PF10120.9 gi|261403792|ref|YP_003248016.1| - 3.4e-58 195.9 0.0 5.4e-58 195.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase Phos_pyr_kin PF08543.12 gi|261403792|ref|YP_003248016.1| - 1.2e-53 182.0 0.1 4.1e-53 180.3 0.1 1.7 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|261403792|ref|YP_003248016.1| - 0.00086 18.8 0.0 0.0058 16.0 0.0 1.9 1 1 0 2 2 2 1 Hydroxyethylthiazole kinase family DALR_1 PF05746.15 gi|261403793|ref|YP_003248017.1| - 1.2e-34 119.0 6.5 1.4e-34 118.9 0.2 3.3 3 0 0 3 3 3 1 DALR anticodon binding domain tRNA-synt_1d PF00750.19 gi|261403793|ref|YP_003248017.1| - 2.9e-32 112.0 1.9 5.4e-32 111.1 1.9 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (R) Arg_tRNA_synt_N PF03485.16 gi|261403793|ref|YP_003248017.1| - 3.4e-20 72.4 9.4 4.7e-20 72.0 1.7 3.9 4 0 0 4 4 4 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|261403793|ref|YP_003248017.1| - 5.4e-08 32.1 0.1 0.011 14.6 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|261403793|ref|YP_003248017.1| - 3.9e-07 29.2 1.6 0.029 13.1 0.1 3.9 3 1 1 4 4 4 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|261403793|ref|YP_003248017.1| - 3.6e-05 23.3 0.4 0.00011 21.6 0.4 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain CAF1 PF04857.20 gi|261403793|ref|YP_003248017.1| - 0.00018 20.8 0.0 0.00032 20.0 0.0 1.5 1 1 0 1 1 1 1 CAF1 family ribonuclease tRNA-synt_1 PF00133.22 gi|261403793|ref|YP_003248017.1| - 0.0067 14.7 0.2 0.02 13.2 0.1 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) TPR_10 PF13374.6 gi|261403793|ref|YP_003248017.1| - 0.061 13.2 0.0 0.27 11.1 0.0 2.2 1 0 0 1 1 1 0 Tetratricopeptide repeat RuvA_C PF07499.13 gi|261403793|ref|YP_003248017.1| - 0.076 13.5 0.1 0.61 10.6 0.0 2.6 2 0 0 2 2 2 0 RuvA, C-terminal domain AAA_15 PF13175.6 gi|261403794|ref|YP_003248018.1| - 2.4e-20 73.6 26.0 2.4e-20 73.6 26.0 1.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_21 PF13304.6 gi|261403794|ref|YP_003248018.1| - 5.4e-14 52.7 11.7 3e-12 47.0 0.9 3.1 2 2 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system GATase PF00117.28 gi|261403796|ref|YP_003248020.1| - 9.9e-52 175.5 0.0 1.2e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|261403796|ref|YP_003248020.1| - 2.2e-10 40.6 0.2 1.5e-09 37.9 0.2 1.9 1 1 0 1 1 1 1 Peptidase C26 Fer4 PF00037.27 gi|261403798|ref|YP_003248022.1| - 3.1e-15 55.2 18.7 6e-09 35.3 6.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261403798|ref|YP_003248022.1| - 3e-11 43.3 27.9 1e-07 31.9 15.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403798|ref|YP_003248022.1| - 2.3e-10 39.9 13.1 6e-06 26.0 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|261403798|ref|YP_003248022.1| - 4e-10 39.4 10.0 5.7e-05 23.3 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403798|ref|YP_003248022.1| - 4.4e-10 40.0 10.9 5.1e-05 23.8 1.6 2.0 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403798|ref|YP_003248022.1| - 8.9e-10 38.2 16.7 2.9e-05 23.9 5.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261403798|ref|YP_003248022.1| - 4.3e-09 36.4 11.7 8e-09 35.5 11.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403798|ref|YP_003248022.1| - 1.6e-08 35.4 11.8 0.0005 21.0 2.1 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|261403798|ref|YP_003248022.1| - 2.4e-08 33.9 13.2 6.3e-05 23.0 2.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403798|ref|YP_003248022.1| - 3.7e-06 27.3 9.2 0.0085 16.5 1.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403798|ref|YP_003248022.1| - 5.2e-06 27.0 18.4 0.0042 17.9 6.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261403798|ref|YP_003248022.1| - 8.1e-05 23.1 11.6 0.032 14.8 3.3 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|261403798|ref|YP_003248022.1| - 0.00018 22.0 12.5 0.046 14.3 2.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261403798|ref|YP_003248022.1| - 0.0037 18.1 13.8 0.15 12.9 3.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261403798|ref|YP_003248022.1| - 0.012 15.8 13.6 0.16 12.2 3.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261403798|ref|YP_003248022.1| - 0.81 10.5 14.6 4.5 8.1 3.6 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|261403798|ref|YP_003248022.1| - 9.5 6.4 11.7 2.1 8.6 1.2 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S IMP_cyclohyd PF07826.11 gi|261403799|ref|YP_003248023.1| - 3.3e-66 222.5 1.3 3.8e-66 222.3 1.3 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein MapZ_C2 PF18708.1 gi|261403799|ref|YP_003248023.1| - 0.024 14.9 0.8 0.042 14.1 0.5 1.6 1 1 0 1 1 1 0 MapZ extracellular C-terminal domain 2 F420_ligase PF01996.16 gi|261403800|ref|YP_003248024.1| - 1.7e-61 207.7 1.8 1.9e-61 207.5 1.8 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase GnsAB_toxin PF08178.11 gi|261403800|ref|YP_003248024.1| - 0.96 9.4 4.4 0.43 10.5 0.1 2.3 2 0 0 2 2 2 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system RHH_1 PF01402.21 gi|261403801|ref|YP_003248025.1| - 5.8e-08 32.4 0.3 3.9e-07 29.8 0.1 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|261403801|ref|YP_003248025.1| - 3.7e-06 27.0 0.1 6.5e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_8 PF17723.1 gi|261403801|ref|YP_003248025.1| - 2.1e-05 24.7 0.1 5.5e-05 23.3 0.0 1.6 1 1 0 2 2 2 1 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|261403801|ref|YP_003248025.1| - 6.4e-05 23.1 0.2 0.00018 21.6 0.0 1.8 2 1 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system DUF4375 PF14300.6 gi|261403801|ref|YP_003248025.1| - 0.017 15.4 0.1 0.031 14.5 0.0 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) Prismane PF03063.20 gi|261403802|ref|YP_003248026.1| - 1.4e-175 584.9 0.1 1.5e-175 584.7 0.1 1.0 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family Ovate PF04844.13 gi|261403802|ref|YP_003248026.1| - 0.0047 16.9 1.6 0.01 15.8 0.1 2.2 3 0 0 3 3 3 1 Transcriptional repressor, ovate DUF3231 PF11553.8 gi|261403802|ref|YP_003248026.1| - 0.0071 16.0 0.7 1.2 8.8 0.2 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF3231) Cupin_1 PF00190.22 gi|261403803|ref|YP_003248027.1| - 1.8e-06 27.6 0.1 2.4e-06 27.2 0.1 1.1 1 0 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|261403803|ref|YP_003248027.1| - 3.1e-06 26.8 0.0 4e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Cupin domain KduI PF04962.12 gi|261403803|ref|YP_003248027.1| - 2e-05 24.1 0.0 2.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family Cupin_3 PF05899.12 gi|261403803|ref|YP_003248027.1| - 0.00063 19.4 0.0 0.00086 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|261403803|ref|YP_003248027.1| - 0.0066 16.3 0.9 0.0082 16.0 0.9 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_N PF06719.13 gi|261403803|ref|YP_003248027.1| - 0.015 14.9 0.0 0.021 14.5 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus CENP-C_C PF11699.8 gi|261403803|ref|YP_003248027.1| - 0.022 14.9 0.3 0.029 14.6 0.3 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like TaqI_C PF12950.7 gi|261403803|ref|YP_003248027.1| - 0.029 14.4 0.4 0.041 14.0 0.4 1.4 1 1 0 1 1 1 0 TaqI-like C-terminal specificity domain AraC_binding PF02311.19 gi|261403803|ref|YP_003248027.1| - 0.046 13.6 0.0 0.056 13.4 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain DHC_N1 PF08385.12 gi|261403804|ref|YP_003248028.1| - 0.00032 19.5 1.3 0.00036 19.3 1.3 1.1 1 0 0 1 1 1 1 Dynein heavy chain, N-terminal region 1 TatD_DNase PF01026.21 gi|261403805|ref|YP_003248029.1| - 8.2e-19 68.0 0.2 1.2e-18 67.4 0.2 1.4 1 1 0 1 1 1 1 TatD related DNase BsuBI_PstI_RE PF06616.11 gi|261403805|ref|YP_003248029.1| - 0.0011 18.3 0.6 0.002 17.5 0.6 1.5 1 0 0 1 1 1 1 BsuBI/PstI restriction endonuclease domain P16-Arc PF04699.14 gi|261403805|ref|YP_003248029.1| - 0.046 14.2 0.3 0.063 13.8 0.3 1.2 1 0 0 1 1 1 0 ARP2/3 complex 16 kDa subunit (p16-Arc) Hpr_kinase_N PF02603.16 gi|261403805|ref|YP_003248029.1| - 0.051 13.6 0.1 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 HPr Serine kinase N terminus RIO1 PF01163.22 gi|261403806|ref|YP_003248030.1| - 4.2e-55 186.3 0.3 6.4e-55 185.7 0.3 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|261403806|ref|YP_003248030.1| - 1.9e-20 72.8 0.2 4.5e-20 71.7 0.1 1.7 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|261403806|ref|YP_003248030.1| - 6.2e-07 29.6 0.3 0.0003 20.8 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|261403806|ref|YP_003248030.1| - 3.2e-06 26.7 0.6 2.7e-05 23.7 0.6 2.0 1 1 0 1 1 1 1 Protein kinase domain Sua5_yciO_yrdC PF01300.18 gi|261403807|ref|YP_003248031.1| - 5e-47 159.7 0.2 5.8e-47 159.5 0.2 1.0 1 0 0 1 1 1 1 Telomere recombination Myosin_tail_1 PF01576.19 gi|261403808|ref|YP_003248032.1| - 0.00025 19.0 3.9 0.00029 18.8 3.9 1.2 1 0 0 1 1 1 1 Myosin tail Spc7 PF08317.11 gi|261403808|ref|YP_003248032.1| - 0.0012 17.8 7.9 0.0014 17.6 7.9 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Sec8_exocyst PF04048.14 gi|261403808|ref|YP_003248032.1| - 0.0032 17.3 8.0 0.024 14.5 2.5 2.4 1 1 1 2 2 2 1 Sec8 exocyst complex component specific domain IFT57 PF10498.9 gi|261403808|ref|YP_003248032.1| - 0.0036 16.3 9.1 0.0036 16.3 9.1 1.8 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 Tektin PF03148.14 gi|261403808|ref|YP_003248032.1| - 0.0045 15.8 9.5 0.083 11.6 5.7 2.2 1 1 1 2 2 2 2 Tektin family DUF5063 PF16702.5 gi|261403808|ref|YP_003248032.1| - 0.011 16.2 1.8 1.8 8.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5063) TMPIT PF07851.13 gi|261403808|ref|YP_003248032.1| - 0.015 14.6 4.4 0.021 14.1 4.4 1.2 1 0 0 1 1 1 0 TMPIT-like protein ISG65-75 PF11727.8 gi|261403808|ref|YP_003248032.1| - 0.017 14.4 1.7 0.021 14.1 1.3 1.3 1 1 0 1 1 1 0 Invariant surface glycoprotein APG17 PF04108.12 gi|261403808|ref|YP_003248032.1| - 0.022 13.9 8.3 0.02 14.0 3.6 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 HMMR_N PF15905.5 gi|261403808|ref|YP_003248032.1| - 0.027 14.0 12.6 0.034 13.6 12.6 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DUF745 PF05335.13 gi|261403808|ref|YP_003248032.1| - 0.031 14.0 1.8 0.053 13.2 1.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF745) Exonuc_VII_L PF02601.15 gi|261403808|ref|YP_003248032.1| - 0.034 13.7 4.5 0.041 13.4 4.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Poty_PP PF08440.10 gi|261403808|ref|YP_003248032.1| - 0.039 13.0 4.7 0.044 12.9 4.7 1.1 1 0 0 1 1 1 0 Potyviridae polyprotein MCPsignal PF00015.21 gi|261403808|ref|YP_003248032.1| - 0.042 13.6 3.1 1 9.1 0.1 2.4 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Atg14 PF10186.9 gi|261403808|ref|YP_003248032.1| - 0.046 12.8 7.1 0.059 12.4 7.1 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DASH_Duo1 PF08651.10 gi|261403808|ref|YP_003248032.1| - 0.06 13.1 15.8 0.28 11.0 2.0 3.4 1 1 2 3 3 3 0 DASH complex subunit Duo1 Prominin PF05478.11 gi|261403808|ref|YP_003248032.1| - 0.075 11.0 15.8 0.078 10.9 12.5 1.9 1 1 1 2 2 2 0 Prominin LMBR1 PF04791.16 gi|261403808|ref|YP_003248032.1| - 0.088 11.7 5.7 0.1 11.5 5.7 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein Laminin_II PF06009.12 gi|261403808|ref|YP_003248032.1| - 0.091 12.8 9.3 1.4 8.9 8.8 2.1 1 1 0 1 1 1 0 Laminin Domain II Snapin_Pallidin PF14712.6 gi|261403808|ref|YP_003248032.1| - 0.091 13.2 6.9 0.32 11.5 3.2 2.7 2 1 1 3 3 3 0 Snapin/Pallidin DUF1664 PF07889.12 gi|261403808|ref|YP_003248032.1| - 0.12 12.5 8.7 1 9.4 2.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF2203 PF09969.9 gi|261403808|ref|YP_003248032.1| - 0.12 13.1 3.0 0.59 10.9 1.4 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) SOAR PF16533.5 gi|261403808|ref|YP_003248032.1| - 0.14 12.1 3.0 0.37 10.8 0.4 2.4 1 1 1 2 2 2 0 STIM1 Orai1-activating region Fez1 PF06818.15 gi|261403808|ref|YP_003248032.1| - 0.17 12.3 5.2 0.23 11.9 5.2 1.2 1 0 0 1 1 1 0 Fez1 Sulfatase_C PF14707.6 gi|261403808|ref|YP_003248032.1| - 0.31 11.8 2.3 4.9 7.9 0.3 2.7 2 1 1 3 3 3 0 C-terminal region of aryl-sulfatase APG6_N PF17675.1 gi|261403808|ref|YP_003248032.1| - 0.53 10.8 8.6 2 9.0 8.1 1.9 1 1 1 2 2 2 0 Apg6 coiled-coil region KxDL PF10241.9 gi|261403808|ref|YP_003248032.1| - 0.56 10.5 7.4 1.6 9.1 3.3 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein Baculo_PEP_C PF04513.12 gi|261403808|ref|YP_003248032.1| - 0.6 10.2 18.6 1.6 8.7 6.6 2.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF16 PF01519.16 gi|261403808|ref|YP_003248032.1| - 0.62 10.6 9.3 3.8 8.1 2.3 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 zf-C4H2 PF10146.9 gi|261403808|ref|YP_003248032.1| - 0.81 10.0 14.0 0.55 10.5 12.2 1.5 1 1 0 1 1 1 0 Zinc finger-containing protein Tweety PF04906.13 gi|261403808|ref|YP_003248032.1| - 0.88 8.2 6.3 0.52 8.9 2.2 1.9 1 1 1 2 2 2 0 Tweety REGB_T4 PF10715.9 gi|261403808|ref|YP_003248032.1| - 0.9 9.7 5.7 4.6 7.4 0.2 2.4 1 1 0 2 2 2 0 T4-page Endoribonuclease RegB DUF4200 PF13863.6 gi|261403808|ref|YP_003248032.1| - 1.3 9.4 10.0 0.41 11.1 3.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF948 PF06103.11 gi|261403808|ref|YP_003248032.1| - 1.4 9.2 14.5 0.26 11.6 1.6 3.6 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) Fmp27_WPPW PF10359.9 gi|261403808|ref|YP_003248032.1| - 1.8 7.3 10.6 2.4 6.9 10.6 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain STAT_alpha PF01017.20 gi|261403808|ref|YP_003248032.1| - 1.8 8.4 8.5 2.5 8.0 6.7 1.9 1 1 1 2 2 2 0 STAT protein, all-alpha domain DUF4795 PF16043.5 gi|261403808|ref|YP_003248032.1| - 2.5 7.7 10.8 1.4 8.5 3.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) MIP-T3_C PF17749.1 gi|261403808|ref|YP_003248032.1| - 3.5 7.6 12.5 2.1 8.3 7.8 2.2 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region UPF0242 PF06785.11 gi|261403808|ref|YP_003248032.1| - 5.9 6.9 15.2 1.5 8.8 11.4 1.9 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Fib_alpha PF08702.10 gi|261403808|ref|YP_003248032.1| - 7 6.8 15.2 8.1 6.6 10.5 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4806 PF16064.5 gi|261403808|ref|YP_003248032.1| - 9.1 6.7 8.6 13 6.2 1.4 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF4806) DUF2117 PF09890.9 gi|261403809|ref|YP_003248033.1| - 2.8e-71 239.4 12.1 4.6e-71 238.7 12.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) Fer4 PF00037.27 gi|261403810|ref|YP_003248034.1| - 9.2e-13 47.4 14.8 2.7e-07 30.1 4.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|261403810|ref|YP_003248034.1| - 3.4e-10 39.9 7.4 3.1e-06 27.2 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|261403810|ref|YP_003248034.1| - 9.6e-09 35.7 7.9 1.6e-08 35.0 7.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403810|ref|YP_003248034.1| - 1.1e-08 35.0 18.6 2.9e-06 27.3 11.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403810|ref|YP_003248034.1| - 3.4e-07 30.6 3.4 0.004 17.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403810|ref|YP_003248034.1| - 5e-07 29.5 12.9 9.8e-06 25.4 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|261403810|ref|YP_003248034.1| - 7.5e-07 29.2 19.0 0.00017 21.6 10.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403810|ref|YP_003248034.1| - 1.9e-06 27.6 12.3 0.002 18.1 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|261403810|ref|YP_003248034.1| - 1.6e-05 25.8 11.8 5.5e-05 24.0 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|261403810|ref|YP_003248034.1| - 0.00014 22.3 8.4 0.046 14.3 11.4 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|261403810|ref|YP_003248034.1| - 0.00032 21.5 1.7 0.12 13.2 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403810|ref|YP_003248034.1| - 0.001 19.4 12.1 0.051 14.1 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261403810|ref|YP_003248034.1| - 0.014 15.9 9.4 0.45 11.1 2.6 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|261403810|ref|YP_003248034.1| - 0.074 13.2 8.8 0.5 10.6 1.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403810|ref|YP_003248034.1| - 0.1 13.6 6.0 0.1 13.6 6.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|261403811|ref|YP_003248035.1| - 7.1e-69 225.1 151.4 8.7e-07 28.5 4.2 14.7 15 0 0 15 15 15 14 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403811|ref|YP_003248035.1| - 7.8e-49 164.1 118.4 1.3e-08 35.3 7.7 10.4 7 2 4 11 11 11 11 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403811|ref|YP_003248035.1| - 1.1e-41 140.8 125.5 1.8e-08 34.4 10.4 10.2 7 2 4 11 11 11 10 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|261403811|ref|YP_003248035.1| - 4.6e-37 125.9 138.8 1.1e-06 28.7 10.3 11.0 4 3 8 12 12 12 12 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403811|ref|YP_003248035.1| - 8e-36 122.8 123.8 0.0013 19.7 7.9 14.1 10 4 4 15 15 15 15 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|261403811|ref|YP_003248035.1| - 8.4e-34 115.5 136.0 2.1e-07 31.0 8.5 10.6 4 3 6 11 11 11 9 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|261403811|ref|YP_003248035.1| - 5.4e-33 111.7 155.7 0.00056 19.9 5.0 14.5 13 2 0 13 13 13 12 4Fe-4S binding domain Fer4_2 PF12797.7 gi|261403811|ref|YP_003248035.1| - 3.3e-26 89.7 140.6 2.9e-05 23.9 3.4 14.4 14 0 0 14 14 14 13 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261403811|ref|YP_003248035.1| - 9.7e-21 74.1 124.5 3.5e-05 24.3 4.6 13.4 7 3 3 12 12 12 10 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403811|ref|YP_003248035.1| - 1.7e-19 69.3 166.5 0.0091 16.9 5.2 14.3 14 0 0 14 14 14 12 4Fe-4S binding domain Fer4_8 PF13183.6 gi|261403811|ref|YP_003248035.1| - 8.4e-17 61.4 131.4 0.00011 22.5 3.3 13.4 6 4 3 10 10 10 8 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|261403811|ref|YP_003248035.1| - 4.8e-11 42.3 141.2 0.062 13.8 1.9 14.4 12 2 2 14 14 14 9 4Fe-4S binding domain Fer4_13 PF13370.6 gi|261403811|ref|YP_003248035.1| - 4.2e-08 33.6 130.9 0.16 12.6 1.8 14.1 13 2 0 13 13 13 10 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|261403811|ref|YP_003248035.1| - 5.6e-07 29.7 122.2 0.029 14.6 8.1 11.1 2 2 9 11 11 11 7 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|261403811|ref|YP_003248035.1| - 0.0007 20.3 103.7 0.019 15.7 0.4 14.5 13 1 1 14 14 14 4 4Fe-4S single cluster domain TPR_17 PF13431.6 gi|261403811|ref|YP_003248035.1| - 3.8 8.1 10.6 24 5.6 0.1 5.4 6 0 0 6 6 6 0 Tetratricopeptide repeat DUF5409 PF17421.2 gi|261403812|ref|YP_003248036.1| - 0.043 14.5 0.9 0.052 14.3 0.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5409) MnhB PF04039.13 gi|261403813|ref|YP_003248037.1| - 9.7e-22 77.6 12.7 9.7e-22 77.6 12.7 2.2 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter SLATT_5 PF18160.1 gi|261403814|ref|YP_003248038.1| - 0.0092 15.3 2.1 0.064 12.6 1.8 1.9 1 1 1 2 2 2 1 SMODS and SLOG-associating 2TM effector domain family 5 7tm_6 PF02949.20 gi|261403814|ref|YP_003248038.1| - 0.43 9.6 5.6 0.53 9.3 5.6 1.1 1 0 0 1 1 1 0 7tm Odorant receptor Proton_antipo_M PF00361.20 gi|261403815|ref|YP_003248039.1| - 3e-43 148.1 25.7 3e-43 148.1 25.7 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|261403815|ref|YP_003248039.1| - 1.5e-11 44.1 10.7 1.5e-11 44.1 10.7 2.5 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 gi|261403816|ref|YP_003248040.1| - 1.4e-25 89.0 5.0 1.5e-25 88.9 5.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|261403816|ref|YP_003248040.1| - 0.00021 21.2 3.5 0.00021 21.2 3.5 1.8 2 0 0 2 2 2 1 Predicted membrane protein (DUF2108) DUF5317 PF17248.2 gi|261403816|ref|YP_003248040.1| - 0.019 15.0 2.4 0.024 14.6 2.4 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5317) AP_endonuc_2 PF01261.24 gi|261403817|ref|YP_003248041.1| - 2e-33 115.6 0.1 2.9e-33 115.1 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|261403817|ref|YP_003248041.1| - 0.00023 20.1 0.1 0.00035 19.5 0.1 1.2 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) DUF3211 PF11485.8 gi|261403817|ref|YP_003248041.1| - 0.02 15.1 1.7 0.039 14.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3211) Amidohydro_1 PF01979.20 gi|261403817|ref|YP_003248041.1| - 0.025 13.9 0.1 1.4 8.1 0.0 2.4 1 1 1 2 2 2 0 Amidohydrolase family AP_endonuc_2_N PF07582.12 gi|261403817|ref|YP_003248041.1| - 0.032 14.0 0.0 0.069 12.9 0.0 1.6 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus Glyco_transf_4 PF13439.6 gi|261403817|ref|YP_003248041.1| - 0.098 12.7 0.1 4.7 7.2 0.0 2.6 2 1 1 3 3 3 0 Glycosyltransferase Family 4 DUF4250 PF14056.6 gi|261403817|ref|YP_003248041.1| - 0.13 12.3 0.5 4.1 7.4 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) Radical_SAM PF04055.21 gi|261403818|ref|YP_003248042.1| - 2.2e-09 37.9 0.5 4.3e-09 37.0 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Amidase PF01425.21 gi|261403819|ref|YP_003248043.1| - 5.7e-128 427.7 0.0 6.7e-128 427.5 0.0 1.0 1 0 0 1 1 1 1 Amidase DAPDH_C PF16654.5 gi|261403819|ref|YP_003248043.1| - 0.12 12.2 0.5 0.25 11.2 0.5 1.5 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain PdaC PF13739.6 gi|261403819|ref|YP_003248043.1| - 0.38 11.8 2.6 0.53 11.3 1.2 2.0 2 0 0 2 2 2 0 Deacetylase PdaC PRKCSH-like PF12999.7 gi|261403819|ref|YP_003248043.1| - 2.6 7.8 4.8 8 6.2 0.0 2.3 2 0 0 2 2 2 0 Glucosidase II beta subunit-like ApbE PF02424.15 gi|261403821|ref|YP_003248045.1| - 0.23 11.0 3.4 0.9 9.0 3.4 1.9 1 1 0 1 1 1 0 ApbE family DUF4870 PF09685.10 gi|261403822|ref|YP_003248046.1| - 7.6e-08 32.4 7.3 9.3e-08 32.2 7.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) Cytochrome_B PF00033.19 gi|261403822|ref|YP_003248046.1| - 0.0012 18.7 1.7 0.0013 18.6 0.9 1.3 1 1 0 1 1 1 1 Cytochrome b/b6/petB TIM PF00121.18 gi|261403823|ref|YP_003248047.1| - 2.9e-14 53.1 0.6 3.9e-13 49.3 0.1 2.1 1 1 1 2 2 2 1 Triosephosphate isomerase NMO PF03060.15 gi|261403823|ref|YP_003248047.1| - 8.5e-06 25.4 0.2 1.2e-05 24.8 0.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|261403823|ref|YP_003248047.1| - 2.3e-05 23.6 0.2 3.6e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.14 gi|261403823|ref|YP_003248047.1| - 4.8e-05 22.8 0.5 8e-05 22.1 0.5 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|261403823|ref|YP_003248047.1| - 0.00018 21.1 0.7 0.00046 19.7 0.2 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|261403823|ref|YP_003248047.1| - 0.00061 19.0 0.3 0.00096 18.4 0.3 1.4 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase DNA_binding_1 PF01035.20 gi|261403824|ref|YP_003248048.1| - 1.4e-25 89.2 0.0 1.9e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.12 gi|261403824|ref|YP_003248048.1| - 0.02 14.6 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Acetyltransf_1 PF00583.25 gi|261403825|ref|YP_003248049.1| - 6.8e-23 81.1 0.1 8.8e-23 80.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|261403825|ref|YP_003248049.1| - 1.7e-15 57.2 0.6 2.4e-15 56.7 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|261403825|ref|YP_003248049.1| - 2e-15 56.8 0.0 2.6e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|261403825|ref|YP_003248049.1| - 7.9e-06 26.1 0.6 1.2e-05 25.5 0.6 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|261403825|ref|YP_003248049.1| - 1.6e-05 24.7 0.0 2.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|261403825|ref|YP_003248049.1| - 2e-05 24.3 0.0 6.1e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|261403825|ref|YP_003248049.1| - 0.00027 21.6 0.1 0.00055 20.6 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|261403825|ref|YP_003248049.1| - 0.0018 17.8 0.5 0.002 17.6 0.5 1.2 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_9 PF13527.7 gi|261403825|ref|YP_003248049.1| - 0.0019 18.3 0.0 0.057 13.5 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|261403825|ref|YP_003248049.1| - 0.026 14.7 0.0 0.037 14.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HMD PF03201.16 gi|261403827|ref|YP_003248051.1| - 5.9e-40 135.4 2.5 1.2e-39 134.4 2.5 1.5 1 0 0 1 1 1 1 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase NAD_binding_2 PF03446.15 gi|261403827|ref|YP_003248051.1| - 0.011 15.9 0.3 0.047 13.9 0.0 2.0 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GTP_EFTU PF00009.27 gi|261403828|ref|YP_003248052.1| - 1.5e-17 63.8 0.5 6.2e-12 45.5 0.0 2.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|261403828|ref|YP_003248052.1| - 1.3e-12 47.8 0.2 1.7e-12 47.4 0.2 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|261403828|ref|YP_003248052.1| - 6.9e-10 38.8 0.1 1e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 Ras family Roc PF08477.13 gi|261403828|ref|YP_003248052.1| - 9.4e-09 35.5 0.0 1.3e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|261403828|ref|YP_003248052.1| - 9.1e-06 25.3 0.9 4.3e-05 23.1 0.9 1.9 1 1 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 gi|261403828|ref|YP_003248052.1| - 9.8e-06 25.1 0.2 1.9e-05 24.2 0.2 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|261403828|ref|YP_003248052.1| - 0.00014 21.9 1.2 0.0079 16.1 0.1 2.1 2 0 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|261403828|ref|YP_003248052.1| - 0.00038 20.3 0.0 0.023 14.5 0.0 2.2 1 1 1 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|261403828|ref|YP_003248052.1| - 0.00083 19.5 0.2 0.049 13.7 0.2 2.1 2 0 0 2 2 2 1 Dynamin family G-alpha PF00503.20 gi|261403828|ref|YP_003248052.1| - 0.0063 15.7 2.4 0.69 9.0 0.1 2.1 2 0 0 2 2 2 2 G-protein alpha subunit AIG1 PF04548.16 gi|261403828|ref|YP_003248052.1| - 0.0097 15.2 0.9 0.03 13.7 0.9 1.8 1 1 0 1 1 1 1 AIG1 family AAA_24 PF13479.6 gi|261403828|ref|YP_003248052.1| - 0.01 15.6 0.2 0.011 15.4 0.2 1.4 1 1 0 1 1 1 0 AAA domain MobB PF03205.14 gi|261403828|ref|YP_003248052.1| - 0.012 15.6 0.2 0.024 14.5 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Septin PF00735.18 gi|261403828|ref|YP_003248052.1| - 0.012 14.9 0.3 0.042 13.1 0.1 1.8 2 0 0 2 2 2 0 Septin PduV-EutP PF10662.9 gi|261403828|ref|YP_003248052.1| - 0.015 15.0 0.5 0.1 12.3 0.1 2.3 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NLE PF08154.12 gi|261403828|ref|YP_003248052.1| - 0.027 15.0 0.8 2.2 8.9 0.2 2.5 1 1 1 2 2 2 0 NLE (NUC135) domain SRPRB PF09439.10 gi|261403828|ref|YP_003248052.1| - 0.045 13.2 0.1 0.054 12.9 0.1 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_14 PF13173.6 gi|261403828|ref|YP_003248052.1| - 0.059 13.4 0.6 0.56 10.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|261403828|ref|YP_003248052.1| - 0.091 13.2 0.1 0.26 11.7 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|261403828|ref|YP_003248052.1| - 0.14 12.4 0.1 0.18 12.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|261403828|ref|YP_003248052.1| - 0.14 12.6 0.5 0.2 12.1 0.5 1.6 1 1 0 1 1 1 0 ABC transporter Robl_LC7 PF03259.17 gi|261403829|ref|YP_003248053.1| - 7.6e-24 83.3 1.1 9.4e-24 83.0 1.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|261403829|ref|YP_003248053.1| - 0.0069 16.2 0.0 0.0078 16.0 0.0 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Aminotran_5 PF00266.19 gi|261403830|ref|YP_003248054.1| - 0.0063 15.5 0.0 0.012 14.6 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DsrD PF08679.11 gi|261403830|ref|YP_003248054.1| - 0.0084 16.4 1.3 0.12 12.7 0.0 3.1 3 1 0 3 3 3 1 Dissimilatory sulfite reductase D (DsrD) PyrI_C PF02748.15 gi|261403830|ref|YP_003248054.1| - 0.017 15.0 1.6 0.02 14.8 0.3 1.8 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Aminotran_3 PF00202.21 gi|261403830|ref|YP_003248054.1| - 0.058 12.1 0.0 2.2 6.8 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class-III C1_1 PF00130.22 gi|261403831|ref|YP_003248055.1| - 0.15 12.0 2.7 2.9 7.9 0.3 2.6 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Ammonium_transp PF00909.21 gi|261403832|ref|YP_003248056.1| - 1e-110 370.2 33.2 1.2e-110 370.0 33.2 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family Asparaginase PF00710.20 gi|261403832|ref|YP_003248056.1| - 0.32 10.5 1.7 0.51 9.9 0.1 2.0 2 1 1 3 3 3 0 Asparaginase, N-terminal P-II PF00543.22 gi|261403833|ref|YP_003248057.1| - 1.5e-39 134.7 2.7 1.6e-39 134.6 2.7 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Gln-synt_C PF00120.24 gi|261403834|ref|YP_003248058.1| - 1.2e-140 468.4 0.0 1.5e-140 468.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|261403834|ref|YP_003248058.1| - 1.1e-30 105.1 0.0 2.2e-30 104.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain QueC PF06508.13 gi|261403835|ref|YP_003248059.1| - 1.3e-71 240.4 0.0 1.5e-71 240.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|261403835|ref|YP_003248059.1| - 1.9e-07 30.2 0.0 2.8e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ThiI PF02568.14 gi|261403835|ref|YP_003248059.1| - 1.6e-06 27.8 0.2 1.7e-05 24.5 0.2 2.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|261403835|ref|YP_003248059.1| - 0.00011 22.0 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|261403835|ref|YP_003248059.1| - 0.00014 21.1 0.0 0.00025 20.2 0.0 1.5 1 0 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|261403835|ref|YP_003248059.1| - 0.00028 20.7 0.0 0.0017 18.2 0.0 1.9 2 0 0 2 2 2 1 PP-loop family Peptidase_M20 PF01546.28 gi|261403836|ref|YP_003248060.1| - 3e-34 118.6 0.0 4e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|261403836|ref|YP_003248060.1| - 5.8e-20 71.2 0.0 1.3e-19 70.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|261403836|ref|YP_003248060.1| - 0.00018 21.3 0.0 0.00028 20.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 LXG PF04740.12 gi|261403836|ref|YP_003248060.1| - 0.048 13.4 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 LXG domain of WXG superfamily PadR PF03551.14 gi|261403837|ref|YP_003248061.1| - 0.0026 17.7 0.5 0.017 15.1 0.3 2.2 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HHH_9 PF17674.1 gi|261403837|ref|YP_003248061.1| - 0.0055 17.6 1.8 0.0095 16.8 0.2 2.1 2 1 1 3 3 3 1 HHH domain CitMHS PF03600.16 gi|261403838|ref|YP_003248062.1| - 2.8e-25 89.1 28.4 2.8e-25 89.1 28.4 2.0 1 1 1 2 2 2 1 Citrate transporter DUF1847 PF08901.11 gi|261403839|ref|YP_003248063.1| - 2.8e-60 202.5 3.3 3.6e-60 202.2 3.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1847) Rab15_effector PF15208.6 gi|261403839|ref|YP_003248063.1| - 0.0061 15.9 0.2 0.0088 15.4 0.2 1.3 1 0 0 1 1 1 1 Rab15 effector IF-2B PF01008.17 gi|261403840|ref|YP_003248064.1| - 1.6e-84 283.5 0.1 2e-84 283.2 0.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1894 PF08979.11 gi|261403841|ref|YP_003248065.1| - 3.8e-29 100.9 2.5 4.4e-29 100.7 2.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1894) DUF1890 PF09001.11 gi|261403842|ref|YP_003248066.1| - 6.1e-45 153.0 0.1 6.9e-45 152.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1890) DUF871 PF05913.11 gi|261403842|ref|YP_003248066.1| - 0.0012 18.1 0.2 0.0022 17.3 0.2 1.3 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF871) PRAI PF00697.22 gi|261403843|ref|YP_003248067.1| - 1.2e-31 110.0 0.6 1.6e-31 109.6 0.6 1.2 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CBS PF00571.28 gi|261403844|ref|YP_003248068.1| - 1.5e-15 57.3 5.1 1.4e-11 44.7 0.1 2.5 2 1 0 2 2 2 2 CBS domain Helicase_C_2 PF13307.6 gi|261403845|ref|YP_003248069.1| - 3.9e-28 98.7 0.2 8.2e-28 97.7 0.0 1.6 2 0 0 2 2 2 1 Helicase C-terminal domain ResIII PF04851.15 gi|261403845|ref|YP_003248069.1| - 1.8e-11 44.4 0.0 8.6e-11 42.1 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|261403845|ref|YP_003248069.1| - 6.5e-10 39.1 0.0 8.6e-07 28.9 0.0 2.7 3 0 0 3 3 3 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|261403845|ref|YP_003248069.1| - 4.1e-07 30.3 0.8 0.00075 19.8 0.2 3.6 2 1 0 2 2 2 2 Helicase conserved C-terminal domain AAA_22 PF13401.6 gi|261403845|ref|YP_003248069.1| - 0.0056 17.0 0.0 6.2 7.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|261403845|ref|YP_003248069.1| - 0.082 12.1 0.1 0.29 10.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|261403845|ref|YP_003248069.1| - 0.11 11.6 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TPR_1 PF00515.28 gi|261403846|ref|YP_003248070.1| - 2e-44 147.6 30.5 1.7e-09 37.1 0.7 8.5 9 0 0 9 9 9 6 Tetratricopeptide repeat TPR_2 PF07719.17 gi|261403846|ref|YP_003248070.1| - 6.5e-41 135.2 26.6 1.1e-07 31.5 0.5 8.2 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261403846|ref|YP_003248070.1| - 6.4e-38 125.8 27.2 8.9e-07 28.6 0.0 8.2 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261403846|ref|YP_003248070.1| - 1.5e-35 120.6 11.0 3.2e-09 36.3 0.1 8.4 4 3 5 9 9 9 6 TPR repeat TPR_14 PF13428.6 gi|261403846|ref|YP_003248070.1| - 1.3e-29 100.3 1.3 0.00064 20.3 0.0 8.9 2 2 7 9 9 9 6 Tetratricopeptide repeat TPR_16 PF13432.6 gi|261403846|ref|YP_003248070.1| - 1.7e-27 95.7 0.0 1.6e-08 35.1 0.1 4.7 3 1 2 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|261403846|ref|YP_003248070.1| - 1.8e-27 93.7 10.4 0.0005 20.3 0.0 7.8 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|261403846|ref|YP_003248070.1| - 5.9e-27 93.8 15.2 7.9e-10 38.9 0.4 6.9 5 3 0 6 6 6 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|261403846|ref|YP_003248070.1| - 8.3e-27 91.2 7.0 0.00019 21.2 0.2 7.8 8 0 0 8 8 8 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|261403846|ref|YP_003248070.1| - 6.7e-24 84.2 5.4 1.1e-06 29.0 0.1 5.0 3 2 3 6 6 6 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|261403846|ref|YP_003248070.1| - 7.6e-23 80.5 0.0 2.1e-05 24.6 0.0 5.6 3 3 3 6 6 6 6 Tetratricopeptide repeat TPR_6 PF13174.6 gi|261403846|ref|YP_003248070.1| - 1.9e-18 65.8 15.5 0.0067 17.0 0.2 7.0 7 0 0 7 7 7 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|261403846|ref|YP_003248070.1| - 1.7e-17 63.4 14.0 1.6e-06 28.2 0.1 4.7 3 2 2 5 5 5 4 Anaphase-promoting complex, cyclosome, subunit 3 NARP1 PF12569.8 gi|261403846|ref|YP_003248070.1| - 5.4e-16 58.6 0.5 1.8e-07 30.5 0.2 4.3 2 1 3 5 5 5 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.6 gi|261403846|ref|YP_003248070.1| - 4.5e-13 49.1 0.1 0.0026 17.0 0.0 4.0 2 2 1 4 4 4 3 Tetratricopeptide repeat RPN7 PF10602.9 gi|261403846|ref|YP_003248070.1| - 2.9e-10 40.1 8.7 0.02 14.6 0.2 5.5 2 2 3 5 5 5 3 26S proteasome subunit RPN7 TPR_10 PF13374.6 gi|261403846|ref|YP_003248070.1| - 1e-09 37.9 8.3 1.9 8.4 0.0 6.8 7 0 0 7 7 6 2 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|261403846|ref|YP_003248070.1| - 2.7e-08 33.6 0.0 0.18 11.1 0.0 4.1 2 1 1 4 4 4 2 MalT-like TPR region PPR PF01535.20 gi|261403846|ref|YP_003248070.1| - 8e-08 32.0 17.9 0.57 10.5 0.4 6.8 7 0 0 7 7 6 2 PPR repeat Fis1_TPR_C PF14853.6 gi|261403846|ref|YP_003248070.1| - 4.2e-07 29.9 13.9 0.0012 18.8 0.5 6.5 5 3 3 8 8 8 1 Fis1 C-terminal tetratricopeptide repeat MIT PF04212.18 gi|261403846|ref|YP_003248070.1| - 7.4e-07 29.1 11.3 0.05 13.7 0.7 6.2 5 1 1 6 6 6 1 MIT (microtubule interacting and transport) domain DUF3856 PF12968.7 gi|261403846|ref|YP_003248070.1| - 3.5e-06 27.2 4.5 0.97 9.5 0.1 5.8 2 1 1 4 4 4 2 Domain of Unknown Function (DUF3856) BTAD PF03704.17 gi|261403846|ref|YP_003248070.1| - 8.5e-06 26.3 0.8 0.64 10.4 0.0 3.3 2 1 2 4 4 4 2 Bacterial transcriptional activator domain ChAPs PF09295.10 gi|261403846|ref|YP_003248070.1| - 1.1e-05 24.6 0.1 0.023 13.7 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) DUF3808 PF10300.9 gi|261403846|ref|YP_003248070.1| - 4.6e-05 22.4 0.5 0.56 8.9 0.0 3.4 2 1 0 3 3 3 2 Protein of unknown function (DUF3808) HrpB1_HrpK PF09613.10 gi|261403846|ref|YP_003248070.1| - 9.6e-05 22.0 0.0 1.2 8.8 0.0 3.8 2 1 0 3 3 3 1 Bacterial type III secretion protein (HrpB1_HrpK) DUF2225 PF09986.9 gi|261403846|ref|YP_003248070.1| - 0.00011 22.0 5.6 0.18 11.5 0.1 4.2 2 2 2 4 4 4 1 Uncharacterized protein conserved in bacteria (DUF2225) NRBF2_MIT PF17169.4 gi|261403846|ref|YP_003248070.1| - 0.0004 20.6 1.2 1.8 8.8 0.0 4.2 4 1 1 5 5 4 1 MIT domain of nuclear receptor-binding factor 2 TPR_21 PF09976.9 gi|261403846|ref|YP_003248070.1| - 0.0005 19.8 2.4 11 5.6 0.2 4.5 3 2 2 5 5 5 0 Tetratricopeptide repeat-like domain SRP_TPR_like PF17004.5 gi|261403846|ref|YP_003248070.1| - 0.00099 19.1 3.8 0.0024 17.8 0.1 2.5 1 1 1 2 2 2 1 Putative TPR-like repeat HTH_Bact PF18768.1 gi|261403846|ref|YP_003248070.1| - 0.0012 18.3 9.4 1.3 8.7 0.2 5.5 4 1 1 5 5 5 1 Helix-turn-helix bacterial domain TPR_4 PF07721.14 gi|261403846|ref|YP_003248070.1| - 0.0019 18.6 0.0 26 5.8 0.0 5.4 6 0 0 6 6 5 0 Tetratricopeptide repeat SNAP PF14938.6 gi|261403846|ref|YP_003248070.1| - 0.0028 17.1 3.0 0.84 9.0 0.3 4.2 3 3 0 3 3 3 1 Soluble NSF attachment protein, SNAP TPR_5 PF12688.7 gi|261403846|ref|YP_003248070.1| - 0.0058 16.9 0.8 2.8 8.2 0.0 3.9 4 1 1 5 5 5 1 Tetratrico peptide repeat TPR_3 PF07720.12 gi|261403846|ref|YP_003248070.1| - 0.009 16.0 7.3 0.11 12.5 0.1 4.4 5 0 0 5 5 4 1 Tetratricopeptide repeat FAT PF02259.23 gi|261403846|ref|YP_003248070.1| - 0.024 13.9 0.2 0.085 12.1 0.2 2.1 1 1 0 1 1 1 0 FAT domain Coatomer_E PF04733.14 gi|261403846|ref|YP_003248070.1| - 0.035 13.5 0.6 0.57 9.5 0.0 2.5 2 1 0 3 3 3 0 Coatomer epsilon subunit DUF5344 PF17279.2 gi|261403846|ref|YP_003248070.1| - 0.13 12.9 3.5 47 4.7 0.0 4.2 5 0 0 5 5 4 0 Family of unknown function (DUF5344) Sel1 PF08238.12 gi|261403846|ref|YP_003248070.1| - 0.13 12.9 10.1 3.2 8.6 0.0 5.1 6 0 0 6 6 5 0 Sel1 repeat BLI1 PF17324.2 gi|261403846|ref|YP_003248070.1| - 2.8 8.7 6.7 8.9 7.0 0.3 3.4 3 1 0 3 3 3 0 BLOC-1 interactor 1 TPR_1 PF00515.28 gi|261403847|ref|YP_003248071.1| - 2e-43 144.5 31.6 2.6e-09 36.5 0.3 9.1 9 0 0 9 9 9 8 Tetratricopeptide repeat TPR_2 PF07719.17 gi|261403847|ref|YP_003248071.1| - 2.5e-38 127.1 28.8 2.1e-09 36.8 0.2 9.8 10 0 0 10 10 10 7 Tetratricopeptide repeat TPR_8 PF13181.6 gi|261403847|ref|YP_003248071.1| - 2.9e-34 114.4 35.2 1.2e-07 31.4 0.1 9.5 10 0 0 10 10 9 6 Tetratricopeptide repeat TPR_14 PF13428.6 gi|261403847|ref|YP_003248071.1| - 2.2e-26 90.3 0.1 0.00026 21.5 0.0 8.7 3 3 6 9 9 9 6 Tetratricopeptide repeat TPR_19 PF14559.6 gi|261403847|ref|YP_003248071.1| - 5.2e-25 87.7 0.8 5.9e-07 29.9 0.1 5.2 3 1 1 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|261403847|ref|YP_003248071.1| - 5.7e-24 84.2 12.7 6.4e-08 32.8 0.1 7.1 4 2 2 6 6 6 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|261403847|ref|YP_003248071.1| - 1.2e-22 79.3 15.6 0.00024 20.7 0.1 9.1 5 3 4 9 9 9 5 TPR repeat TPR_17 PF13431.6 gi|261403847|ref|YP_003248071.1| - 1e-21 75.7 5.4 0.0022 18.2 0.1 7.5 6 1 1 7 7 7 4 Tetratricopeptide repeat TPR_7 PF13176.6 gi|261403847|ref|YP_003248071.1| - 4.1e-21 73.4 9.2 0.0017 18.2 0.0 8.0 7 1 1 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.6 gi|261403847|ref|YP_003248071.1| - 7.1e-21 74.1 0.1 2.6e-05 24.3 0.0 6.0 3 3 4 7 7 7 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|261403847|ref|YP_003248071.1| - 7e-18 64.6 15.4 1.5e-08 34.7 1.1 4.1 2 1 2 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_16 PF13432.6 gi|261403847|ref|YP_003248071.1| - 6.9e-17 61.8 0.3 1e-08 35.6 0.1 4.6 3 2 3 6 6 6 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|261403847|ref|YP_003248071.1| - 1.3e-15 57.3 2.0 4.8e-05 22.5 0.0 5.0 2 2 2 5 5 5 4 NMDA receptor-regulated protein 1 TPR_6 PF13174.6 gi|261403847|ref|YP_003248071.1| - 1.7e-12 47.1 11.2 0.016 15.8 0.0 6.7 8 0 0 8 8 5 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|261403847|ref|YP_003248071.1| - 2.4e-12 46.3 7.9 0.023 14.6 0.2 5.7 5 0 0 5 5 5 4 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|261403847|ref|YP_003248071.1| - 3.3e-09 36.7 13.3 0.0049 16.9 0.2 7.0 5 3 2 7 7 7 1 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|261403847|ref|YP_003248071.1| - 7.8e-07 29.2 0.9 0.79 9.8 0.1 4.8 3 3 1 4 4 4 2 Domain of Unknown Function (DUF3856) TPR_15 PF13429.6 gi|261403847|ref|YP_003248071.1| - 2.4e-06 27.0 0.0 0.077 12.2 0.0 3.2 1 1 0 2 2 2 2 Tetratricopeptide repeat PPR PF01535.20 gi|261403847|ref|YP_003248071.1| - 4e-06 26.7 17.2 3.8 8.0 0.1 7.8 8 0 0 8 8 8 1 PPR repeat DUF3808 PF10300.9 gi|261403847|ref|YP_003248071.1| - 1.7e-05 23.7 1.0 0.48 9.1 0.2 4.0 1 1 2 4 4 4 2 Protein of unknown function (DUF3808) HrpB1_HrpK PF09613.10 gi|261403847|ref|YP_003248071.1| - 2.1e-05 24.2 0.1 0.73 9.5 0.0 4.0 2 1 2 4 4 4 1 Bacterial type III secretion protein (HrpB1_HrpK) Alkyl_sulf_dimr PF14863.6 gi|261403847|ref|YP_003248071.1| - 2.2e-05 25.0 0.3 0.17 12.3 0.0 3.2 4 0 0 4 4 3 2 Alkyl sulfatase dimerisation MIT PF04212.18 gi|261403847|ref|YP_003248071.1| - 2.8e-05 24.1 14.7 0.35 11.0 0.4 5.7 3 2 2 5 5 5 1 MIT (microtubule interacting and transport) domain TPR_4 PF07721.14 gi|261403847|ref|YP_003248071.1| - 6.2e-05 23.3 0.0 33 5.5 0.0 4.8 5 0 0 5 5 4 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|261403847|ref|YP_003248071.1| - 6.3e-05 22.8 8.9 1.3 8.7 0.3 4.6 3 3 2 5 5 5 3 26S proteasome subunit RPN7 TPR_MalT PF17874.1 gi|261403847|ref|YP_003248071.1| - 7.6e-05 22.2 0.3 0.26 10.6 0.0 3.6 2 2 2 4 4 4 2 MalT-like TPR region Sel1 PF08238.12 gi|261403847|ref|YP_003248071.1| - 0.00029 21.4 8.2 0.021 15.5 0.7 4.6 4 1 0 4 4 4 1 Sel1 repeat SRP_TPR_like PF17004.5 gi|261403847|ref|YP_003248071.1| - 0.0003 20.8 11.0 0.00096 19.2 2.5 3.6 2 1 2 4 4 4 2 Putative TPR-like repeat DUF2225 PF09986.9 gi|261403847|ref|YP_003248071.1| - 0.00036 20.3 4.5 0.036 13.8 0.9 3.1 2 1 1 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2225) Cohesin_load PF10345.9 gi|261403847|ref|YP_003248071.1| - 0.00069 18.2 2.3 0.5 8.8 0.1 3.1 1 1 0 3 3 3 1 Cohesin loading factor DUF5113 PF17140.4 gi|261403847|ref|YP_003248071.1| - 0.001 18.9 5.3 1.4 8.7 0.1 4.5 3 1 1 5 5 5 1 Domain of unknown function (DUF5113) BLI1 PF17324.2 gi|261403847|ref|YP_003248071.1| - 0.0016 19.1 6.4 0.04 14.6 0.5 3.5 2 1 1 3 3 3 1 BLOC-1 interactor 1 TPR_21 PF09976.9 gi|261403847|ref|YP_003248071.1| - 0.0018 18.1 0.4 2.7 7.7 0.0 3.0 3 0 0 3 3 3 1 Tetratricopeptide repeat-like domain SNAP PF14938.6 gi|261403847|ref|YP_003248071.1| - 0.0049 16.3 0.9 0.89 8.9 0.1 3.2 3 0 0 3 3 3 1 Soluble NSF attachment protein, SNAP BTAD PF03704.17 gi|261403847|ref|YP_003248071.1| - 0.0085 16.5 1.3 0.64 10.4 0.1 3.1 2 1 2 4 4 4 1 Bacterial transcriptional activator domain Sec16_C PF12931.7 gi|261403847|ref|YP_003248071.1| - 0.011 15.4 0.6 0.32 10.6 0.0 2.9 3 0 0 3 3 3 0 Sec23-binding domain of Sec16 ChAPs PF09295.10 gi|261403847|ref|YP_003248071.1| - 0.023 13.7 0.0 2.6 6.9 0.1 2.0 2 0 0 2 2 2 0 ChAPs (Chs5p-Arf1p-binding proteins) NRBF2_MIT PF17169.4 gi|261403847|ref|YP_003248071.1| - 0.41 10.9 3.1 8.5 6.7 0.0 3.6 3 2 1 4 4 3 0 MIT domain of nuclear receptor-binding factor 2 CxxCxxCC PF03692.15 gi|261403848|ref|YP_003248072.1| - 3.7e-10 40.4 11.9 6.5e-10 39.6 11.9 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ndr PF03096.14 gi|261403848|ref|YP_003248072.1| - 0.1 11.3 0.1 0.15 10.7 0.1 1.2 1 0 0 1 1 1 0 Ndr family UPF0014 PF03649.13 gi|261403849|ref|YP_003248073.1| - 7.3e-66 222.0 26.1 8.1e-66 221.8 26.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) GARS_A PF01071.19 gi|261403850|ref|YP_003248074.1| - 2e-66 223.5 1.4 4.7e-66 222.3 1.4 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|261403850|ref|YP_003248074.1| - 1.6e-25 89.7 2.2 1.2e-24 86.9 0.4 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|261403850|ref|YP_003248074.1| - 4.4e-15 55.7 0.7 2.2e-14 53.5 0.3 2.2 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|261403850|ref|YP_003248074.1| - 9.4e-07 29.0 0.0 3.5e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|261403850|ref|YP_003248074.1| - 6.7e-05 22.5 0.1 0.0007 19.2 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|261403850|ref|YP_003248074.1| - 0.0025 17.3 0.1 0.0084 15.6 0.1 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF3887 PF13026.6 gi|261403850|ref|YP_003248074.1| - 0.0068 17.2 0.0 0.026 15.3 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3887) DpaA_N PF16924.5 gi|261403850|ref|YP_003248074.1| - 0.0078 16.3 0.0 0.049 13.7 0.0 2.5 2 0 0 2 2 2 1 Dipicolinate synthase subunit A N-terminal domain IlvC PF01450.19 gi|261403850|ref|YP_003248074.1| - 0.068 13.4 0.4 0.22 11.8 0.1 2.0 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF5040 PF16443.5 gi|261403850|ref|YP_003248074.1| - 0.17 11.3 0.1 0.45 9.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5040) Metallophos_2 PF12850.7 gi|261403851|ref|YP_003248075.1| - 5.7e-31 107.9 0.3 6.5e-31 107.7 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|261403851|ref|YP_003248075.1| - 4.2e-08 33.9 8.3 3.3e-06 27.8 8.3 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|261403851|ref|YP_003248075.1| - 0.0063 15.9 0.2 0.086 12.2 0.0 2.2 1 1 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DUF5616 PF18481.1 gi|261403852|ref|YP_003248076.1| - 1.5e-40 138.8 0.5 1.9e-40 138.4 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|261403852|ref|YP_003248076.1| - 7.8e-21 73.5 1.0 1.3e-20 72.8 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) DUF4710 PF15828.5 gi|261403852|ref|YP_003248076.1| - 0.034 14.3 1.1 0.058 13.5 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4710) Fer4 PF00037.27 gi|261403853|ref|YP_003248077.1| - 1.9e-32 109.7 61.9 5.3e-09 35.5 2.9 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_6 PF12837.7 gi|261403853|ref|YP_003248077.1| - 1.7e-22 78.4 62.3 2.5e-05 24.1 3.4 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|261403853|ref|YP_003248077.1| - 7.9e-19 68.0 48.3 4.6e-08 33.5 12.0 5.4 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|261403853|ref|YP_003248077.1| - 3.4e-18 64.5 51.7 0.00015 21.6 1.9 6.2 6 0 0 6 6 6 6 4Fe-4S binding domain Fer4_10 PF13237.6 gi|261403853|ref|YP_003248077.1| - 2.4e-17 62.8 49.4 2.1e-07 31.0 8.7 4.8 2 1 3 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|261403853|ref|YP_003248077.1| - 3.9e-17 62.1 43.5 2.3e-07 30.8 9.0 4.7 2 1 3 5 5 5 4 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|261403853|ref|YP_003248077.1| - 9.4e-16 57.7 51.6 3.1e-05 24.0 3.0 4.3 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|261403853|ref|YP_003248077.1| - 5.9e-15 56.0 48.3 5.1e-06 27.3 2.4 6.1 3 2 2 6 6 6 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|261403853|ref|YP_003248077.1| - 1.5e-10 40.7 56.3 0.00055 20.2 2.4 6.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|261403853|ref|YP_003248077.1| - 5.4e-10 39.7 44.6 0.0022 18.5 0.2 6.1 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|261403853|ref|YP_003248077.1| - 3.8e-08 33.5 6.5 3.8e-08 33.5 6.5 4.3 1 1 4 5 5 4 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|261403853|ref|YP_003248077.1| - 4.7e-08 33.3 46.5 0.0035 17.8 0.2 6.1 4 2 3 7 7 7 5 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|261403853|ref|YP_003248077.1| - 1.5e-06 28.7 70.3 0.00043 21.0 5.6 6.2 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|261403853|ref|YP_003248077.1| - 0.00059 20.5 44.7 0.19 12.5 1.1 6.4 6 0 0 6 6 6 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|261403853|ref|YP_003248077.1| - 0.008 17.0 39.3 0.014 16.2 0.1 5.8 4 1 1 6 6 6 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|261403853|ref|YP_003248077.1| - 0.037 14.6 1.7 0.037 14.6 1.7 6.2 6 0 0 6 6 6 0 4Fe-4S single cluster domain of Ferredoxin I DUF92 PF01940.16 gi|261403854|ref|YP_003248078.1| - 2.1e-51 174.6 15.3 4.5e-51 173.5 15.3 1.5 1 1 0 1 1 1 1 Integral membrane protein DUF92 MscS_TM PF12794.7 gi|261403854|ref|YP_003248078.1| - 0.2 10.5 3.8 0.3 9.9 3.8 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 HlyE PF06109.13 gi|261403854|ref|YP_003248078.1| - 0.84 8.9 3.0 0.41 9.9 0.1 1.8 2 0 0 2 2 2 0 Haemolysin E (HlyE) SLATT_1 PF18181.1 gi|261403854|ref|YP_003248078.1| - 0.96 9.4 0.0 0.96 9.4 0.0 2.2 3 1 1 4 4 4 0 SMODS and SLOG-associating 2TM effector domain 1 PRD1_DD PF11087.8 gi|261403854|ref|YP_003248078.1| - 5.6 6.7 15.3 3.6 7.3 2.6 3.7 4 0 0 4 4 4 0 PRD1 phage membrane DNA delivery CBFD_NFYB_HMF PF00808.23 gi|261403855|ref|YP_003248079.1| - 7.5e-21 74.2 3.2 8.2e-21 74.1 3.2 1.0 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|261403855|ref|YP_003248079.1| - 9.2e-13 48.7 1.2 1e-12 48.6 1.2 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 TAF PF02969.17 gi|261403855|ref|YP_003248079.1| - 1e-07 32.0 0.9 1.1e-07 31.9 0.9 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|261403855|ref|YP_003248079.1| - 1.7e-06 28.3 0.2 1.9e-06 28.2 0.2 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID_20kDa PF03847.13 gi|261403855|ref|YP_003248079.1| - 1.8e-05 25.1 0.3 2.1e-05 24.9 0.3 1.2 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TFIID-31kDa PF02291.15 gi|261403855|ref|YP_003248079.1| - 1.9e-05 24.7 0.1 2.1e-05 24.6 0.1 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit Bromo_TP PF07524.13 gi|261403855|ref|YP_003248079.1| - 2.8e-05 24.0 0.0 3.4e-05 23.8 0.0 1.0 1 0 0 1 1 1 1 Bromodomain associated CENP-T_C PF15511.6 gi|261403855|ref|YP_003248079.1| - 3.4e-05 23.9 0.1 3.7e-05 23.8 0.1 1.0 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|261403855|ref|YP_003248079.1| - 0.00067 19.6 0.1 0.00074 19.5 0.1 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|261403855|ref|YP_003248079.1| - 0.0022 18.1 1.1 0.0024 18.0 1.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) ThiI PF02568.14 gi|261403856|ref|YP_003248080.1| - 1.4e-83 279.3 0.6 1.4e-83 279.3 0.6 1.5 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|261403856|ref|YP_003248080.1| - 1.6e-27 96.4 6.9 1.6e-27 96.4 6.9 2.5 3 0 0 3 3 3 1 THUMP domain QueC PF06508.13 gi|261403856|ref|YP_003248080.1| - 2.3e-07 30.5 0.2 1.6e-06 27.8 0.2 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|261403856|ref|YP_003248080.1| - 0.00089 18.1 0.3 0.0038 16.1 0.2 2.2 1 1 1 2 2 2 1 tRNA methyl transferase Focal_AT PF03623.13 gi|261403856|ref|YP_003248080.1| - 0.017 15.1 0.5 0.052 13.5 0.5 1.8 1 0 0 1 1 1 0 Focal adhesion targeting region tRNA_NucTran2_2 PF13735.6 gi|261403856|ref|YP_003248080.1| - 0.029 14.4 0.2 0.072 13.1 0.2 1.6 1 0 0 1 1 1 0 tRNA nucleotidyltransferase domain 2 putative BRCA2 PF00634.18 gi|261403856|ref|YP_003248080.1| - 0.049 13.3 0.1 0.14 11.8 0.1 1.9 1 0 0 1 1 1 0 BRCA2 repeat Ribosomal_L37ae PF01780.19 gi|261403856|ref|YP_003248080.1| - 1.6 8.8 3.6 0.84 9.8 0.3 2.2 3 0 0 3 3 3 0 Ribosomal L37ae protein family CbiC PF02570.15 gi|261403857|ref|YP_003248081.1| - 4.1e-65 219.1 0.8 4.8e-65 218.9 0.8 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase DUF3798 PF12683.7 gi|261403857|ref|YP_003248081.1| - 0.033 13.6 1.2 0.064 12.7 1.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3798) Lyase_1 PF00206.20 gi|261403858|ref|YP_003248082.1| - 4.8e-61 206.8 1.0 7.5e-61 206.2 1.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|261403858|ref|YP_003248082.1| - 1.1e-25 90.0 0.2 1.1e-25 90.0 0.2 3.5 5 0 0 5 5 5 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|261403858|ref|YP_003248082.1| - 4.5e-08 33.2 1.0 4.5e-08 33.2 1.0 2.2 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|261403858|ref|YP_003248082.1| - 0.00018 21.9 2.8 0.00025 21.4 0.1 2.7 3 0 0 3 3 3 1 Fumarase C C-terminus ASL_C2 PF14698.6 gi|261403858|ref|YP_003248082.1| - 0.012 16.4 0.3 0.048 14.4 0.0 2.2 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocaldococcus_vulcanius_M7_uid41131/NC_013407.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocaldococcus_vulcanius_M7_uid41131/NC_013407.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocaldococcus_vulcanius_M7_uid41131/NC_013407.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Methanocaldococcus_vulcanius_M7_uid41131/NC_013407.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:51:02 2019 # [ok]