# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|284163296|ref|YP_003401575.1| - 6.9e-24 83.6 0.1 1.7e-23 82.4 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|284163296|ref|YP_003401575.1| - 1.1e-09 38.8 0.0 0.0007 20.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284163296|ref|YP_003401575.1| - 7.4e-09 36.2 1.9 1e-07 32.5 0.2 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284163296|ref|YP_003401575.1| - 2.6e-08 34.2 0.2 7.6e-06 26.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|284163296|ref|YP_003401575.1| - 0.00059 19.3 0.2 0.0044 16.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein RuvB_N PF05496.12 gi|284163296|ref|YP_003401575.1| - 0.00065 19.5 0.1 0.0018 18.0 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DUF815 PF05673.13 gi|284163296|ref|YP_003401575.1| - 0.0027 16.9 0.0 0.0066 15.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|284163296|ref|YP_003401575.1| - 0.0032 17.2 0.0 0.0073 16.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|284163296|ref|YP_003401575.1| - 0.0049 17.0 0.1 3.4 7.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|284163296|ref|YP_003401575.1| - 0.0055 16.6 0.2 0.12 12.3 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|284163296|ref|YP_003401575.1| - 0.0074 15.4 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|284163296|ref|YP_003401575.1| - 0.009 16.6 0.0 0.025 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|284163296|ref|YP_003401575.1| - 0.014 15.3 0.0 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_32 PF13654.6 gi|284163296|ref|YP_003401575.1| - 0.026 13.3 0.8 0.85 8.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|284163296|ref|YP_003401575.1| - 0.026 15.0 0.0 0.084 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter TIP49 PF06068.13 gi|284163296|ref|YP_003401575.1| - 0.045 13.0 0.0 0.091 12.0 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_assoc_2 PF16193.5 gi|284163296|ref|YP_003401575.1| - 0.045 14.1 1.3 0.098 13.0 0.3 2.1 2 0 0 2 2 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|284163296|ref|YP_003401575.1| - 0.05 13.1 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|284163296|ref|YP_003401575.1| - 0.086 12.1 0.0 0.26 10.5 0.0 1.8 2 0 0 2 2 2 0 KAP family P-loop domain DNA_pol3_delta2 PF13177.6 gi|284163296|ref|YP_003401575.1| - 0.089 12.6 0.2 0.23 11.3 0.1 1.8 2 1 0 2 2 2 0 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|284163296|ref|YP_003401575.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|284163296|ref|YP_003401575.1| - 0.13 12.0 0.0 0.34 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|284163296|ref|YP_003401575.1| - 0.18 11.5 1.2 10 5.8 0.0 2.6 3 0 0 3 3 3 0 DEAD/DEAH box helicase SPX PF03105.19 gi|284163296|ref|YP_003401575.1| - 0.36 10.7 3.7 0.72 9.7 3.7 1.5 1 0 0 1 1 1 0 SPX domain MutS_III PF05192.18 gi|284163296|ref|YP_003401575.1| - 0.42 10.8 5.3 2.4 8.3 5.3 2.1 1 1 0 1 1 1 0 MutS domain III Peptidase_S24 PF00717.23 gi|284163298|ref|YP_003401577.1| - 7.7e-07 29.0 0.1 1.9e-06 27.7 0.1 1.7 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|284163299|ref|YP_003401578.1| - 1.2e-14 54.2 0.0 1.9e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|284163299|ref|YP_003401578.1| - 9.1e-12 45.5 2.0 2.2e-11 44.2 2.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284163299|ref|YP_003401578.1| - 6.9e-10 39.8 0.5 1.4e-09 38.8 0.5 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase MaoC_dehydratas PF01575.19 gi|284163300|ref|YP_003401579.1| - 6.3e-06 25.8 0.1 7.1e-05 22.4 0.1 2.1 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284163300|ref|YP_003401579.1| - 0.031 14.4 0.0 0.37 10.9 0.0 2.0 1 1 0 1 1 1 0 N-terminal half of MaoC dehydratase PSD5 PF07637.11 gi|284163300|ref|YP_003401579.1| - 0.075 13.4 0.4 7.3 7.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) Amidohydro_2 PF04909.14 gi|284163301|ref|YP_003401580.1| - 1e-26 94.5 0.5 1.2e-26 94.2 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase MaoC_dehydratas PF01575.19 gi|284163302|ref|YP_003401581.1| - 1.6e-24 85.8 0.1 2.2e-24 85.4 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284163302|ref|YP_003401581.1| - 0.0021 18.2 0.1 0.0059 16.7 0.1 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Carboxyl_trans PF01039.22 gi|284163303|ref|YP_003401582.1| - 1.1e-128 430.0 0.0 1.4e-128 429.6 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain Acyl-CoA_dh_1 PF00441.24 gi|284163305|ref|YP_003401584.1| - 2.8e-30 105.5 1.1 5e-30 104.7 1.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284163305|ref|YP_003401584.1| - 2.6e-23 82.8 2.6 5.3e-23 81.8 2.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284163305|ref|YP_003401584.1| - 5e-22 77.9 0.0 1.3e-21 76.6 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284163305|ref|YP_003401584.1| - 1.2e-17 64.5 0.5 2.4e-17 63.5 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|284163306|ref|YP_003401585.1| - 4.1e-90 302.4 0.0 5e-90 302.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284163306|ref|YP_003401585.1| - 4.3e-21 75.7 1.5 4.3e-21 75.7 1.5 2.5 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Robl_LC7 PF03259.17 gi|284163306|ref|YP_003401585.1| - 0.025 14.3 0.1 0.057 13.2 0.1 1.6 1 0 0 1 1 1 0 Roadblock/LC7 domain TetR_C_6 PF13977.6 gi|284163307|ref|YP_003401586.1| - 5.5e-15 55.6 2.7 5.5e-15 55.6 2.7 1.7 2 1 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|284163307|ref|YP_003401586.1| - 6e-07 29.2 0.0 9.9e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 gi|284163307|ref|YP_003401586.1| - 2.6e-05 24.2 0.2 4.8e-05 23.4 0.2 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|284163307|ref|YP_003401586.1| - 7.4e-05 23.0 0.3 0.00022 21.5 0.1 1.9 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|284163307|ref|YP_003401586.1| - 0.00083 19.4 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|284163307|ref|YP_003401586.1| - 0.0045 17.2 2.0 0.0068 16.6 1.1 1.9 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|284163307|ref|YP_003401586.1| - 0.12 12.4 0.0 0.58 10.3 0.0 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ABC_tran PF00005.27 gi|284163308|ref|YP_003401587.1| - 1.1e-29 103.7 0.0 1.7e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163308|ref|YP_003401587.1| - 3.8e-14 53.2 0.3 1.6e-09 38.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284163308|ref|YP_003401587.1| - 6.3e-09 36.4 0.0 1.6e-08 35.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|284163308|ref|YP_003401587.1| - 0.013 15.9 0.0 0.035 14.5 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|284163308|ref|YP_003401587.1| - 0.018 14.8 0.0 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|284163308|ref|YP_003401587.1| - 0.022 15.2 0.2 0.22 11.9 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|284163308|ref|YP_003401587.1| - 0.037 13.7 0.3 0.067 12.8 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|284163308|ref|YP_003401587.1| - 0.052 13.3 0.2 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284163308|ref|YP_003401587.1| - 0.06 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284163308|ref|YP_003401587.1| - 0.074 13.6 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|284163308|ref|YP_003401587.1| - 0.082 12.2 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC2_membrane PF01061.24 gi|284163309|ref|YP_003401588.1| - 1.2e-32 113.0 11.9 1.2e-32 113.0 11.9 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|284163309|ref|YP_003401588.1| - 1.2e-13 50.9 17.1 1.5e-13 50.6 17.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|284163309|ref|YP_003401588.1| - 0.00094 18.5 18.9 0.0019 17.5 18.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein AA_kinase PF00696.28 gi|284163311|ref|YP_003401590.1| - 8.9e-47 159.7 2.3 8.9e-47 159.7 2.3 1.6 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|284163311|ref|YP_003401590.1| - 2.3e-15 56.1 0.0 3e-07 30.1 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|284163311|ref|YP_003401590.1| - 3e-09 36.5 2.3 0.0047 16.7 0.1 3.5 3 0 0 3 3 3 2 ACT domain ACT_6 PF13740.6 gi|284163311|ref|YP_003401590.1| - 0.0029 17.5 0.1 1.7 8.7 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|284163311|ref|YP_003401590.1| - 0.0085 16.7 0.1 2.1 9.0 0.0 2.7 2 0 0 2 2 2 1 ACT domain AP_endonuc_2 PF01261.24 gi|284163311|ref|YP_003401590.1| - 0.013 14.9 0.0 0.039 13.4 0.0 1.7 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF3237 PF11578.8 gi|284163311|ref|YP_003401590.1| - 0.055 13.3 0.4 0.27 11.1 0.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3237) Beta_elim_lyase PF01212.21 gi|284163313|ref|YP_003401592.1| - 7.4e-72 242.1 0.0 1.2e-71 241.4 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Acetyltransf_7 PF13508.7 gi|284163315|ref|YP_003401594.1| - 1.5e-09 38.1 0.2 3.4e-09 37.0 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284163315|ref|YP_003401594.1| - 2.4e-09 37.4 0.6 5.5e-09 36.3 0.4 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284163315|ref|YP_003401594.1| - 2.9e-07 30.5 0.0 4.1e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284163315|ref|YP_003401594.1| - 0.0067 16.5 0.2 0.029 14.5 0.2 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284163315|ref|YP_003401594.1| - 0.079 12.9 0.5 0.46 10.5 0.5 2.0 1 1 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|284163315|ref|YP_003401594.1| - 0.17 12.0 0.1 0.34 11.1 0.1 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|284163315|ref|YP_003401594.1| - 1.7 8.4 3.8 0.48 10.2 0.8 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ AhpC-TSA PF00578.21 gi|284163316|ref|YP_003401595.1| - 5.1e-16 58.7 0.0 6.6e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284163316|ref|YP_003401595.1| - 7.6e-08 32.2 0.0 8.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|284163316|ref|YP_003401595.1| - 4.3e-05 23.6 0.0 6.6e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme HTH_10 PF04967.12 gi|284163317|ref|YP_003401596.1| - 6e-16 58.0 0.0 1.2e-15 57.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284163317|ref|YP_003401596.1| - 2.9e-11 43.5 1.1 4.3e-11 42.9 1.1 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|284163317|ref|YP_003401596.1| - 0.0031 17.3 0.3 0.0074 16.1 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284163317|ref|YP_003401596.1| - 0.013 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284163317|ref|YP_003401596.1| - 0.021 14.8 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 gi|284163317|ref|YP_003401596.1| - 0.11 12.2 0.1 0.45 10.2 0.1 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284163317|ref|YP_003401596.1| - 0.12 11.9 1.1 0.18 11.3 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Ring_hydroxyl_A PF00848.19 gi|284163318|ref|YP_003401597.1| - 2e-08 34.5 0.0 2.3e-08 34.2 0.0 1.0 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) DAO PF01266.24 gi|284163319|ref|YP_003401598.1| - 3.8e-46 158.3 0.3 4.3e-46 158.1 0.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284163319|ref|YP_003401598.1| - 4.5e-05 22.3 0.7 0.0082 14.9 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|284163319|ref|YP_003401598.1| - 0.00027 20.3 0.6 0.0071 15.6 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|284163319|ref|YP_003401598.1| - 0.0035 16.6 0.0 0.02 14.2 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SUKH-4 PF14435.6 gi|284163319|ref|YP_003401598.1| - 0.013 15.6 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 SUKH-4 immunity protein ApbA PF02558.16 gi|284163319|ref|YP_003401598.1| - 0.025 14.2 0.2 0.048 13.3 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|284163319|ref|YP_003401598.1| - 0.026 13.8 0.3 0.026 13.8 0.3 1.5 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|284163319|ref|YP_003401598.1| - 0.092 12.6 0.2 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284163319|ref|YP_003401598.1| - 0.11 12.6 0.1 0.19 11.9 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase FapA PF03961.13 gi|284163321|ref|YP_003401600.1| - 0.0033 16.1 11.5 0.0048 15.6 11.5 1.3 1 0 0 1 1 1 1 Flagellar Assembly Protein A Phage_spike PF18715.1 gi|284163321|ref|YP_003401600.1| - 1.7 8.7 19.3 2 8.5 0.7 4.1 2 2 1 3 3 3 0 Phage spike trimer Rep_fac_C PF08542.11 gi|284163322|ref|YP_003401601.1| - 3.5e-23 81.8 0.0 6.3e-23 81.0 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|284163322|ref|YP_003401601.1| - 1.8e-18 67.3 0.0 1.8e-16 60.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|284163322|ref|YP_003401601.1| - 9.8e-14 51.5 0.0 2.5e-11 43.6 0.0 2.1 1 1 1 2 2 2 1 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|284163322|ref|YP_003401601.1| - 1.4e-06 28.4 0.0 2.1e-06 27.8 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|284163322|ref|YP_003401601.1| - 4e-06 27.1 0.4 1.4e-05 25.3 0.2 2.0 1 1 0 1 1 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|284163322|ref|YP_003401601.1| - 1.2e-05 25.3 0.0 0.00013 22.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain DNA_pol3_delta PF06144.13 gi|284163322|ref|YP_003401601.1| - 4.7e-05 23.2 0.0 8.6e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|284163322|ref|YP_003401601.1| - 5.8e-05 23.5 0.3 0.17 12.3 0.0 2.8 2 1 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|284163322|ref|YP_003401601.1| - 0.00021 21.1 0.0 0.0026 17.5 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|284163322|ref|YP_003401601.1| - 0.0015 18.8 0.9 0.43 10.9 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|284163322|ref|YP_003401601.1| - 0.0025 18.4 0.0 0.019 15.5 0.0 2.4 1 1 2 3 3 3 1 AAA domain TIP49 PF06068.13 gi|284163322|ref|YP_003401601.1| - 0.0031 16.8 0.0 0.013 14.7 0.0 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain ResIII PF04851.15 gi|284163322|ref|YP_003401601.1| - 0.004 17.2 0.0 0.025 14.6 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|284163322|ref|YP_003401601.1| - 0.0063 16.3 0.0 0.015 15.0 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|284163322|ref|YP_003401601.1| - 0.0064 15.9 0.0 1.2 8.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|284163322|ref|YP_003401601.1| - 0.01 15.9 0.1 0.16 12.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|284163322|ref|YP_003401601.1| - 0.01 15.3 0.0 0.34 10.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|284163322|ref|YP_003401601.1| - 0.011 15.3 0.5 0.04 13.5 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|284163322|ref|YP_003401601.1| - 0.011 15.6 0.0 0.064 13.1 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284163322|ref|YP_003401601.1| - 0.019 14.7 0.0 0.76 9.5 0.0 2.4 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|284163322|ref|YP_003401601.1| - 0.022 14.5 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|284163322|ref|YP_003401601.1| - 0.022 14.2 0.0 0.043 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF3400 PF11880.8 gi|284163322|ref|YP_003401601.1| - 0.028 13.9 0.0 0.073 12.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) Viral_helicase1 PF01443.18 gi|284163322|ref|YP_003401601.1| - 0.045 13.5 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SNF2_N PF00176.23 gi|284163322|ref|YP_003401601.1| - 0.062 12.0 0.0 0.093 11.4 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain DEAD PF00270.29 gi|284163322|ref|YP_003401601.1| - 0.063 13.0 1.3 5.9 6.6 0.0 2.8 2 1 1 3 3 3 0 DEAD/DEAH box helicase TetR_C_12 PF16914.5 gi|284163322|ref|YP_003401601.1| - 0.087 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial transcriptional repressor C-terminal CobA_CobO_BtuR PF02572.15 gi|284163322|ref|YP_003401601.1| - 0.093 13.0 0.0 0.21 11.8 0.0 1.6 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_33 PF13671.6 gi|284163322|ref|YP_003401601.1| - 0.16 12.1 0.4 0.38 10.9 0.2 1.9 2 1 0 2 2 2 0 AAA domain GAF_2 PF13185.6 gi|284163323|ref|YP_003401602.1| - 2.4e-10 40.9 1.2 2.4e-10 40.9 1.2 3.3 4 0 0 4 4 4 1 GAF domain GAF PF01590.26 gi|284163323|ref|YP_003401602.1| - 1.3e-06 29.1 0.9 4.3e-06 27.4 0.1 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|284163323|ref|YP_003401602.1| - 5.4e-05 23.1 0.0 0.06 13.4 0.0 3.0 2 0 0 2 2 2 2 PAS domain CCB2_CCB4 PF11152.8 gi|284163323|ref|YP_003401602.1| - 0.00029 20.2 0.0 0.0021 17.4 0.0 2.1 2 0 0 2 2 2 1 Cofactor assembly of complex C subunit B, CCB2/CCB4 HisKA PF00512.25 gi|284163323|ref|YP_003401602.1| - 0.0013 18.7 0.4 0.0013 18.7 0.4 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|284163323|ref|YP_003401602.1| - 0.0021 18.4 0.0 0.0074 16.6 0.0 2.0 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|284163323|ref|YP_003401602.1| - 1.8 8.9 10.2 0.27 11.5 0.5 3.9 3 2 1 4 4 4 0 PAS fold Asparaginase PF00710.20 gi|284163324|ref|YP_003401603.1| - 2.1e-54 184.0 1.7 3e-54 183.5 0.2 1.8 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|284163324|ref|YP_003401603.1| - 2.2e-26 92.3 0.1 4.3e-26 91.4 0.1 1.5 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain EIIBC-GUT_C PF07663.11 gi|284163324|ref|YP_003401603.1| - 0.024 14.8 0.1 0.062 13.5 0.1 1.7 1 0 0 1 1 1 0 Sorbitol phosphotransferase enzyme II C-terminus Polysacc_deac_1 PF01522.21 gi|284163325|ref|YP_003401604.1| - 2.7e-16 59.6 0.0 4.3e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|284163325|ref|YP_003401604.1| - 6.8e-05 22.6 0.0 0.00014 21.6 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF1269 PF06897.12 gi|284163326|ref|YP_003401605.1| - 7.2 7.0 8.7 19 5.6 4.6 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) TAT_signal PF10518.9 gi|284163327|ref|YP_003401606.1| - 0.03 14.2 1.7 0.1 12.5 1.7 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence tRNA-synt_2c PF01411.19 gi|284163328|ref|YP_003401607.1| - 4.7e-116 388.5 0.0 5.8e-116 388.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|284163328|ref|YP_003401607.1| - 1.4e-16 61.2 1.9 3.4e-16 59.9 1.9 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|284163328|ref|YP_003401607.1| - 2.3e-12 46.8 1.8 2.5e-12 46.7 0.5 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain VWA PF00092.28 gi|284163331|ref|YP_003401610.1| - 8.1e-24 84.8 0.0 2.2e-23 83.4 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|284163331|ref|YP_003401610.1| - 9e-14 52.0 0.0 1.2e-12 48.4 0.0 3.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|284163331|ref|YP_003401610.1| - 0.00032 20.7 0.0 0.0011 18.9 0.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF5011 PF16403.5 gi|284163331|ref|YP_003401610.1| - 0.0064 16.6 0.1 0.032 14.4 0.1 2.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5011) He_PIG PF05345.12 gi|284163331|ref|YP_003401610.1| - 5.9 7.2 5.9 18 5.6 0.1 3.5 3 0 0 3 3 3 0 Putative Ig domain Abhydrolase_1 PF00561.20 gi|284163332|ref|YP_003401611.1| - 6.9e-14 52.1 0.0 1.3e-07 31.5 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284163332|ref|YP_003401611.1| - 1.1e-13 52.3 11.8 1.3e-13 52.1 11.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284163332|ref|YP_003401611.1| - 5.5e-10 38.9 0.0 1.5e-09 37.5 0.0 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Na_H_Exchanger PF00999.21 gi|284163333|ref|YP_003401612.1| - 2e-44 151.9 52.9 3.1e-44 151.3 52.9 1.2 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|284163333|ref|YP_003401612.1| - 6.4e-14 52.7 2.3 8.4e-14 52.3 1.0 1.8 2 0 0 2 2 2 1 Universal stress protein family DUF2270 PF10028.9 gi|284163334|ref|YP_003401613.1| - 5.9e-73 244.4 0.5 7.1e-73 244.1 0.5 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF3054 PF11255.8 gi|284163334|ref|YP_003401613.1| - 0.0032 18.0 8.9 0.25 11.9 1.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3054) Acyl_transf_3 PF01757.22 gi|284163334|ref|YP_003401613.1| - 0.13 11.3 5.5 0.062 12.3 0.7 2.1 2 1 0 2 2 2 0 Acyltransferase family AMP-binding PF00501.28 gi|284163335|ref|YP_003401614.1| - 6.3e-33 114.0 0.0 2.8e-32 111.9 0.0 1.8 1 1 0 1 1 1 1 AMP-binding enzyme OmpA PF00691.20 gi|284163335|ref|YP_003401614.1| - 0.2 12.0 0.1 0.93 9.9 0.1 1.9 2 0 0 2 2 2 0 OmpA family GATase PF00117.28 gi|284163336|ref|YP_003401615.1| - 4.8e-21 75.4 0.0 7.4e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284163336|ref|YP_003401615.1| - 1.8e-06 27.9 0.8 0.00019 21.3 0.3 2.6 2 1 0 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|284163336|ref|YP_003401615.1| - 0.0032 17.3 0.0 0.035 13.9 0.0 2.1 2 0 0 2 2 2 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|284163336|ref|YP_003401615.1| - 0.055 13.1 0.0 0.081 12.5 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CCG PF02754.16 gi|284163337|ref|YP_003401616.1| - 1.2e-15 57.5 0.0 3.2e-11 43.3 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|284163337|ref|YP_003401616.1| - 5.2e-10 39.3 9.6 1.8e-08 34.3 10.1 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284163337|ref|YP_003401616.1| - 9.9e-10 37.8 13.3 1.7e-05 24.4 1.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284163337|ref|YP_003401616.1| - 2.2e-09 37.6 5.4 2.2e-09 37.6 5.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284163337|ref|YP_003401616.1| - 3.6e-09 36.6 7.9 4.8e-09 36.2 6.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284163337|ref|YP_003401616.1| - 1.6e-07 31.8 21.6 4.1e-07 30.5 10.5 2.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284163337|ref|YP_003401616.1| - 2e-07 30.7 12.1 0.00026 20.9 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284163337|ref|YP_003401616.1| - 2.2e-05 25.3 9.7 0.00018 22.4 10.1 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|284163337|ref|YP_003401616.1| - 7.1e-05 22.9 11.7 0.0087 16.2 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284163337|ref|YP_003401616.1| - 0.00026 20.9 23.2 0.00039 20.4 4.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|284163337|ref|YP_003401616.1| - 0.00032 21.2 10.5 0.00032 21.2 10.5 2.6 3 1 1 4 4 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284163337|ref|YP_003401616.1| - 0.0012 19.2 18.6 0.0051 17.2 1.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|284163337|ref|YP_003401616.1| - 0.0063 17.2 4.6 0.39 11.5 0.3 3.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|284163337|ref|YP_003401616.1| - 0.044 14.6 9.8 0.054 14.3 0.2 2.9 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284163337|ref|YP_003401616.1| - 0.21 11.8 10.5 1.2 9.4 1.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|284163337|ref|YP_003401616.1| - 0.43 11.2 15.9 1.9 9.1 3.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|284163337|ref|YP_003401616.1| - 2.9 9.0 25.5 0.71 11.0 5.3 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain zf-C4H2 PF10146.9 gi|284163338|ref|YP_003401617.1| - 0.28 11.5 1.3 0.37 11.1 0.6 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein Cas_Cas4 PF01930.17 gi|284163339|ref|YP_003401618.1| - 0.0014 18.8 0.0 0.0098 16.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF83 Sua5_yciO_yrdC PF01300.18 gi|284163341|ref|YP_003401620.1| - 8.2e-45 152.5 0.0 9.4e-45 152.3 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination SPACA7 PF15307.6 gi|284163341|ref|YP_003401620.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Sperm acrosome-associated protein 7 AhpC-TSA PF00578.21 gi|284163342|ref|YP_003401621.1| - 1e-07 31.9 0.0 1.4e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284163342|ref|YP_003401621.1| - 5.7e-05 22.9 0.0 8.9e-05 22.2 0.0 1.4 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|284163342|ref|YP_003401621.1| - 0.22 11.7 0.0 0.28 11.3 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme GST_N_3 PF13417.6 gi|284163343|ref|YP_003401622.1| - 5.8e-14 52.2 0.0 7.3e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|284163343|ref|YP_003401622.1| - 2.9e-11 43.5 0.0 3.6e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|284163343|ref|YP_003401622.1| - 4.6e-11 42.8 0.2 7.4e-11 42.1 0.2 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.20 gi|284163343|ref|YP_003401622.1| - 0.0002 21.7 0.0 0.00025 21.3 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF21 PF01595.20 gi|284163344|ref|YP_003401623.1| - 6.1e-50 169.4 0.8 8.7e-50 168.8 0.8 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|284163344|ref|YP_003401623.1| - 2.6e-21 75.4 2.7 2.6e-21 75.4 2.7 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|284163344|ref|YP_003401623.1| - 4.6e-13 49.4 3.8 7.3e-06 26.3 0.2 2.9 2 0 0 2 2 2 2 CBS domain WSS_VP PF12175.8 gi|284163344|ref|YP_003401623.1| - 0.046 13.2 0.7 0.077 12.5 0.1 1.7 2 0 0 2 2 2 0 White spot syndrome virus structural envelope protein VP 4HBT PF03061.22 gi|284163345|ref|YP_003401624.1| - 1.3e-17 63.9 0.1 2e-17 63.3 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily AAA PF00004.29 gi|284163346|ref|YP_003401625.1| - 1.7e-12 47.9 0.1 5.3e-12 46.3 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|284163346|ref|YP_003401625.1| - 1.3e-11 44.5 0.0 2.4e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|284163346|ref|YP_003401625.1| - 1.7e-10 41.1 0.3 4.4e-10 39.8 0.1 1.8 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA_22 PF13401.6 gi|284163346|ref|YP_003401625.1| - 1.4e-07 31.9 0.0 2.8e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284163346|ref|YP_003401625.1| - 4.1e-06 27.3 0.3 7.4e-05 23.2 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|284163346|ref|YP_003401625.1| - 2.4e-05 24.1 0.0 0.00056 19.7 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|284163346|ref|YP_003401625.1| - 2.7e-05 23.7 0.0 4.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|284163346|ref|YP_003401625.1| - 5.6e-05 23.7 0.0 0.00025 21.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|284163346|ref|YP_003401625.1| - 0.00025 21.0 0.0 0.00067 19.6 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.6 gi|284163346|ref|YP_003401625.1| - 0.00061 19.7 0.0 0.0018 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|284163346|ref|YP_003401625.1| - 0.0013 18.5 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|284163346|ref|YP_003401625.1| - 0.0013 18.7 0.9 0.0079 16.2 0.2 2.4 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|284163346|ref|YP_003401625.1| - 0.0017 18.7 0.1 0.0071 16.7 0.0 1.9 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|284163346|ref|YP_003401625.1| - 0.0022 17.3 0.0 0.0062 15.8 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.6 gi|284163346|ref|YP_003401625.1| - 0.0039 17.2 0.0 0.011 15.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|284163346|ref|YP_003401625.1| - 0.005 15.9 0.0 0.012 14.7 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|284163346|ref|YP_003401625.1| - 0.011 15.8 0.0 0.05 13.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|284163346|ref|YP_003401625.1| - 0.012 15.4 0.0 0.039 13.7 0.0 1.9 3 0 0 3 3 2 0 IstB-like ATP binding protein His_Phos_1 PF00300.22 gi|284163346|ref|YP_003401625.1| - 0.036 13.8 0.2 0.7 9.6 0.0 2.3 1 1 1 2 2 2 0 Histidine phosphatase superfamily (branch 1) AAA_30 PF13604.6 gi|284163346|ref|YP_003401625.1| - 0.038 13.7 0.0 0.07 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284163346|ref|YP_003401625.1| - 0.039 14.1 0.1 0.099 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|284163346|ref|YP_003401625.1| - 0.048 13.2 0.0 3.8 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|284163346|ref|YP_003401625.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DNA_pol3_delta PF06144.13 gi|284163346|ref|YP_003401625.1| - 0.052 13.3 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit Lipoprotein_16 PF03923.13 gi|284163346|ref|YP_003401625.1| - 0.074 12.7 0.0 3.2 7.4 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized lipoprotein DEAD PF00270.29 gi|284163346|ref|YP_003401625.1| - 0.09 12.5 0.2 5.6 6.7 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase RuvB_N PF05496.12 gi|284163346|ref|YP_003401625.1| - 0.094 12.5 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|284163346|ref|YP_003401625.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain Rad17 PF03215.15 gi|284163346|ref|YP_003401625.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Terminase_6 PF03237.15 gi|284163346|ref|YP_003401625.1| - 0.11 12.1 0.0 0.31 10.7 0.0 1.7 1 1 0 1 1 1 0 Terminase-like family TPR_14 PF13428.6 gi|284163346|ref|YP_003401625.1| - 0.13 13.1 5.4 41 5.4 0.2 4.4 4 0 0 4 4 3 0 Tetratricopeptide repeat RNA_helicase PF00910.22 gi|284163346|ref|YP_003401625.1| - 0.14 12.5 0.0 0.38 11.1 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_7 PF12775.7 gi|284163346|ref|YP_003401625.1| - 0.2 11.2 0.0 0.6 9.6 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region CARDB PF07705.11 gi|284163347|ref|YP_003401626.1| - 4.2e-06 26.9 0.2 4.2e-06 26.9 0.2 3.0 3 0 0 3 3 3 1 CARDB Big_7 PF17957.1 gi|284163347|ref|YP_003401626.1| - 0.00045 20.9 2.8 0.0006 20.5 0.4 2.6 2 0 0 2 2 2 1 Bacterial Ig domain Big_3_5 PF16640.5 gi|284163347|ref|YP_003401626.1| - 0.0019 18.3 0.7 0.0019 18.3 0.7 4.3 4 2 1 5 5 5 1 Bacterial Ig-like domain (group 3) DUF1616 PF07760.11 gi|284163347|ref|YP_003401626.1| - 0.12 11.7 0.7 1.1 8.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) FixH PF05751.11 gi|284163347|ref|YP_003401626.1| - 0.79 9.7 6.1 1.6 8.7 0.1 2.9 4 0 0 4 4 4 0 FixH Lactamase_B_2 PF12706.7 gi|284163348|ref|YP_003401627.1| - 4.8e-18 65.4 3.4 2.2e-08 33.8 0.1 2.2 1 1 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284163348|ref|YP_003401627.1| - 1.9e-13 50.9 5.2 2.4e-12 47.3 0.6 2.1 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|284163348|ref|YP_003401627.1| - 0.0076 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease AP_endonuc_2 PF01261.24 gi|284163348|ref|YP_003401627.1| - 0.017 14.6 0.6 0.033 13.6 0.6 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel RMMBL PF07521.12 gi|284163348|ref|YP_003401627.1| - 0.078 12.9 0.0 20 5.2 0.0 2.7 3 0 0 3 3 3 0 Zn-dependent metallo-hydrolase RNA specificity domain DUF460 PF04312.13 gi|284163349|ref|YP_003401628.1| - 5.6e-50 168.7 0.7 1.5e-49 167.3 0.2 2.0 2 0 0 2 2 1 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|284163349|ref|YP_003401628.1| - 0.00035 20.9 3.1 0.00035 20.9 3.1 4.8 4 1 1 5 5 4 1 Actinobacteria/chloroflexi VLRF1 release factor HOOK PF05622.12 gi|284163349|ref|YP_003401628.1| - 0.0006 18.1 18.8 0.0098 14.1 10.5 2.1 1 1 1 2 2 2 2 HOOK protein Exonuc_VII_L PF02601.15 gi|284163349|ref|YP_003401628.1| - 0.0014 18.3 1.1 0.0023 17.6 1.1 1.4 1 0 0 1 1 1 1 Exonuclease VII, large subunit BLOC1_2 PF10046.9 gi|284163349|ref|YP_003401628.1| - 0.0034 17.6 6.8 0.048 14.0 2.2 2.7 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF812 PF05667.11 gi|284163349|ref|YP_003401628.1| - 0.0038 16.2 11.1 0.0071 15.3 11.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Spc7 PF08317.11 gi|284163349|ref|YP_003401628.1| - 0.0046 15.9 12.9 0.0084 15.0 12.9 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|284163349|ref|YP_003401628.1| - 0.012 16.0 13.4 0.26 11.7 3.1 2.8 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) HMMR_N PF15905.5 gi|284163349|ref|YP_003401628.1| - 0.031 13.8 19.1 0.051 13.1 19.1 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Cep57_CLD PF14073.6 gi|284163349|ref|YP_003401628.1| - 0.037 14.0 17.5 0.078 13.0 17.5 1.5 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 DUF2968 PF11180.8 gi|284163349|ref|YP_003401628.1| - 0.048 13.3 15.7 0.016 14.8 12.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Herpes_UL6 PF01763.16 gi|284163349|ref|YP_003401628.1| - 0.049 12.2 3.8 0.07 11.6 3.8 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like DUF4407 PF14362.6 gi|284163349|ref|YP_003401628.1| - 0.072 12.4 9.5 0.17 11.2 9.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF724 PF05266.14 gi|284163349|ref|YP_003401628.1| - 0.085 12.7 12.5 0.19 11.6 12.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF1664 PF07889.12 gi|284163349|ref|YP_003401628.1| - 0.095 12.7 7.9 2.6 8.1 1.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) MAD PF05557.13 gi|284163349|ref|YP_003401628.1| - 0.099 11.0 18.5 0.17 10.2 18.5 1.3 1 0 0 1 1 1 0 Mitotic checkpoint protein ERM PF00769.19 gi|284163349|ref|YP_003401628.1| - 0.1 12.4 22.9 0.031 14.1 19.7 1.7 2 0 0 2 2 1 0 Ezrin/radixin/moesin family ATG16 PF08614.11 gi|284163349|ref|YP_003401628.1| - 0.12 12.5 19.5 0.35 11.1 19.5 1.7 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Baculo_PEP_C PF04513.12 gi|284163349|ref|YP_003401628.1| - 0.17 11.9 0.1 0.33 11.0 0.1 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF16 PF01519.16 gi|284163349|ref|YP_003401628.1| - 0.19 12.3 10.4 0.43 11.1 4.4 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 FAM76 PF16046.5 gi|284163349|ref|YP_003401628.1| - 0.22 10.9 5.8 0.35 10.2 5.8 1.3 1 0 0 1 1 1 0 FAM76 protein Lectin_N PF03954.14 gi|284163349|ref|YP_003401628.1| - 0.23 11.2 4.3 0.73 9.6 0.9 2.6 2 1 1 3 3 2 0 Hepatic lectin, N-terminal domain YPEB PF14620.6 gi|284163349|ref|YP_003401628.1| - 0.27 10.5 3.5 0.47 9.7 3.5 1.3 1 0 0 1 1 1 0 YpeB sporulation TRAF_BIRC3_bd PF16673.5 gi|284163349|ref|YP_003401628.1| - 0.46 10.3 16.6 0.12 12.2 4.1 2.7 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain PspA_IM30 PF04012.12 gi|284163349|ref|YP_003401628.1| - 0.53 9.8 20.3 0.16 11.6 15.5 2.4 2 1 0 2 2 1 0 PspA/IM30 family V_ATPase_I PF01496.19 gi|284163349|ref|YP_003401628.1| - 0.54 8.1 7.7 0.78 7.6 7.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4094 PF13334.6 gi|284163349|ref|YP_003401628.1| - 0.56 10.7 6.2 0.18 12.3 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) Laminin_II PF06009.12 gi|284163349|ref|YP_003401628.1| - 0.65 10.0 7.1 1.9 8.5 7.1 1.8 1 0 0 1 1 1 0 Laminin Domain II DUF5082 PF16888.5 gi|284163349|ref|YP_003401628.1| - 0.72 10.1 8.1 10 6.4 0.4 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF5082) XhlA PF10779.9 gi|284163349|ref|YP_003401628.1| - 0.91 9.8 15.3 1.2 9.4 3.6 2.7 1 1 1 2 2 2 0 Haemolysin XhlA bZIP_1 PF00170.21 gi|284163349|ref|YP_003401628.1| - 1.1 9.4 22.2 0.89 9.7 6.5 2.8 3 0 0 3 3 2 0 bZIP transcription factor AKNA PF12443.8 gi|284163349|ref|YP_003401628.1| - 1.3 9.7 5.8 5.5 7.7 0.4 2.4 1 1 1 2 2 2 0 AT-hook-containing transcription factor Cauli_AT PF03233.13 gi|284163349|ref|YP_003401628.1| - 1.4 8.8 8.2 0.12 12.2 2.9 1.8 2 0 0 2 2 2 0 Aphid transmission protein BRE1 PF08647.11 gi|284163349|ref|YP_003401628.1| - 1.5 8.9 12.5 8.4 6.5 4.5 2.5 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase TMF_TATA_bd PF12325.8 gi|284163349|ref|YP_003401628.1| - 1.5 9.1 28.7 1.7 8.9 11.5 2.8 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding Phage_GP20 PF06810.11 gi|284163349|ref|YP_003401628.1| - 2.3 8.0 9.2 0.49 10.2 0.9 2.9 2 1 1 3 3 2 0 Phage minor structural protein GP20 Spc24 PF08286.11 gi|284163349|ref|YP_003401628.1| - 2.7 8.3 14.9 6 7.2 3.6 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Fib_alpha PF08702.10 gi|284163349|ref|YP_003401628.1| - 2.8 8.1 7.0 1.9 8.7 2.3 2.5 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family FapA PF03961.13 gi|284163349|ref|YP_003401628.1| - 3.1 6.3 7.3 4.9 5.7 7.3 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A FlaG PF03646.15 gi|284163349|ref|YP_003401628.1| - 3.9 7.7 9.0 1.5 9.1 1.0 2.6 1 1 0 2 2 2 0 FlaG protein CorA PF01544.18 gi|284163349|ref|YP_003401628.1| - 4.9 6.4 7.4 10 5.4 7.4 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Tropomyosin_1 PF12718.7 gi|284163349|ref|YP_003401628.1| - 7.1 6.8 31.8 1.3 9.1 8.7 3.6 3 1 1 4 4 4 0 Tropomyosin like DUF572 PF04502.13 gi|284163349|ref|YP_003401628.1| - 8.5 5.9 15.5 22 4.5 15.5 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF572) Spc29 PF17082.5 gi|284163349|ref|YP_003401628.1| - 8.9 6.1 13.4 7.6 6.3 2.3 2.4 1 1 1 2 2 2 0 Spindle Pole Component 29 AAA_13 PF13166.6 gi|284163349|ref|YP_003401628.1| - 9.7 4.7 10.8 24 3.4 10.7 1.4 1 1 0 1 1 1 0 AAA domain DUF2583 PF10762.9 gi|284163351|ref|YP_003401630.1| - 4.6 7.7 8.9 0.54 10.7 2.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) Gram_pos_anchor PF00746.21 gi|284163351|ref|YP_003401630.1| - 6 6.9 17.4 1.8 8.5 3.9 2.1 1 1 1 2 2 2 0 LPXTG cell wall anchor motif DUF4337 PF14235.6 gi|284163351|ref|YP_003401630.1| - 8 6.6 6.2 8.8 6.4 6.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) eIF-1a PF01176.19 gi|284163352|ref|YP_003401631.1| - 1.1e-24 86.0 0.2 1.4e-24 85.7 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ChapFlgA_N PF17656.1 gi|284163352|ref|YP_003401631.1| - 0.02 15.0 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 FlgA N-terminal domain Sclerostin PF05463.11 gi|284163352|ref|YP_003401631.1| - 0.036 13.8 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Sclerostin (SOST) Peptidase_S8 PF00082.22 gi|284163353|ref|YP_003401632.1| - 4.2e-49 167.4 6.5 5.9e-49 166.9 6.5 1.2 1 0 0 1 1 1 1 Subtilase family MOFRL PF05161.13 gi|284163353|ref|YP_003401632.1| - 0.0053 16.9 0.7 0.013 15.6 0.7 1.7 1 0 0 1 1 1 1 MOFRL family Aminotran_5 PF00266.19 gi|284163354|ref|YP_003401633.1| - 1.2e-29 103.5 0.0 1.5e-29 103.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Copper-bind PF00127.20 gi|284163355|ref|YP_003401634.1| - 1.7e-13 50.8 0.0 2.2e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|284163355|ref|YP_003401634.1| - 0.0082 16.0 5.2 0.014 15.2 5.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Herpes_LMP1 PF05297.11 gi|284163355|ref|YP_003401634.1| - 1.3 8.1 6.3 2.1 7.5 6.3 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Copper-bind PF00127.20 gi|284163356|ref|YP_003401635.1| - 6.8e-07 29.7 0.0 1.1e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family MFS_1 PF07690.16 gi|284163357|ref|YP_003401636.1| - 1.5e-34 119.5 61.5 9.5e-21 74.1 31.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TagF_N PF09867.9 gi|284163357|ref|YP_003401636.1| - 0.022 14.8 0.3 0.065 13.3 0.1 1.8 2 0 0 2 2 2 0 TagF N-terminal domain, Type VI secretion system-associated TAT_signal PF10518.9 gi|284163358|ref|YP_003401637.1| - 0.36 10.8 6.8 0.69 9.9 6.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Methyltransf_11 PF08241.12 gi|284163359|ref|YP_003401638.1| - 1e-23 83.8 0.0 1.5e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284163359|ref|YP_003401638.1| - 1.3e-22 80.3 0.0 1.9e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284163359|ref|YP_003401638.1| - 9.4e-22 77.4 0.0 1.2e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284163359|ref|YP_003401638.1| - 7.4e-21 74.7 0.0 9.5e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284163359|ref|YP_003401638.1| - 3.9e-15 55.8 0.0 4.3e-14 52.4 0.0 1.9 1 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|284163359|ref|YP_003401638.1| - 5.5e-12 46.3 0.0 8e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284163359|ref|YP_003401638.1| - 1.7e-07 31.0 0.0 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|284163359|ref|YP_003401638.1| - 1.9e-05 24.2 0.0 2.3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|284163359|ref|YP_003401638.1| - 3.4e-05 23.9 0.0 4.7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|284163359|ref|YP_003401638.1| - 5.9e-05 22.6 0.0 8.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|284163359|ref|YP_003401638.1| - 8.8e-05 22.3 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|284163359|ref|YP_003401638.1| - 0.00014 21.5 0.0 0.00018 21.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|284163359|ref|YP_003401638.1| - 0.0012 18.2 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|284163359|ref|YP_003401638.1| - 0.0016 18.3 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|284163359|ref|YP_003401638.1| - 0.0045 16.6 0.0 0.0065 16.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Mur_ligase PF01225.25 gi|284163359|ref|YP_003401638.1| - 0.014 15.7 0.0 0.027 14.8 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain RrnaAD PF00398.20 gi|284163359|ref|YP_003401638.1| - 0.018 14.2 0.0 0.022 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|284163359|ref|YP_003401638.1| - 0.052 13.5 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|284163359|ref|YP_003401638.1| - 0.097 11.2 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase AdoMet_MTase PF07757.13 gi|284163359|ref|YP_003401638.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase TrkA_N PF02254.18 gi|284163359|ref|YP_003401638.1| - 0.18 12.1 0.0 0.42 10.9 0.0 1.6 2 0 0 2 2 1 0 TrkA-N domain N2227 PF07942.12 gi|284163359|ref|YP_003401638.1| - 0.25 10.5 0.0 0.35 10.0 0.0 1.1 1 0 0 1 1 1 0 N2227-like protein DrsE PF02635.15 gi|284163360|ref|YP_003401639.1| - 2.2e-09 37.7 0.0 2.9e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|284163360|ref|YP_003401639.1| - 0.11 12.4 0.1 0.14 12.0 0.1 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family Cys_Met_Meta_PP PF01053.20 gi|284163361|ref|YP_003401640.1| - 3.2e-136 453.9 0.0 3.6e-136 453.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|284163361|ref|YP_003401640.1| - 5.9e-08 32.3 0.0 9.5e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|284163361|ref|YP_003401640.1| - 2.6e-07 30.3 0.4 5.4e-07 29.2 0.4 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|284163361|ref|YP_003401640.1| - 0.0004 19.4 0.0 0.00066 18.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|284163361|ref|YP_003401640.1| - 0.002 17.5 0.1 0.0044 16.3 0.1 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Abhydrolase_1 PF00561.20 gi|284163362|ref|YP_003401641.1| - 1.3e-26 93.8 0.0 1.6e-26 93.5 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284163362|ref|YP_003401641.1| - 0.01 15.1 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Esterase PF00756.20 gi|284163362|ref|YP_003401641.1| - 0.089 12.4 0.0 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 Putative esterase NADHdh PF00146.21 gi|284163364|ref|YP_003401643.1| - 0.1 11.9 3.7 0.13 11.5 3.7 1.1 1 0 0 1 1 1 0 NADH dehydrogenase HAD PF12710.7 gi|284163365|ref|YP_003401644.1| - 8.4e-22 78.5 2.2 1e-21 78.2 2.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284163365|ref|YP_003401644.1| - 6.5e-14 52.7 9.9 4.9e-12 46.6 9.9 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|284163365|ref|YP_003401644.1| - 8e-11 42.1 0.4 8.9e-09 35.4 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284163365|ref|YP_003401644.1| - 5.6e-06 26.6 0.7 0.00019 21.6 0.1 2.6 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|284163365|ref|YP_003401644.1| - 0.0019 17.8 0.0 0.0037 16.8 0.0 1.5 1 1 1 2 2 2 1 Pyrimidine 5'-nucleotidase (UMPH-1) LpxI_N PF17930.1 gi|284163365|ref|YP_003401644.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 LpxI N-terminal domain EamA PF00892.20 gi|284163366|ref|YP_003401645.1| - 4.7e-25 88.4 27.6 1.5e-15 57.6 13.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|284163366|ref|YP_003401645.1| - 8.7e-05 22.0 9.7 0.057 12.8 4.1 2.3 1 1 1 2 2 2 2 Triose-phosphate Transporter family UAA PF08449.11 gi|284163366|ref|YP_003401645.1| - 0.45 9.7 8.0 0.028 13.6 2.8 1.6 2 0 0 2 2 2 0 UAA transporter family TMEM234 PF10639.9 gi|284163366|ref|YP_003401645.1| - 0.9 9.6 6.9 2.9 8.0 0.7 3.0 2 1 0 2 2 2 0 Putative transmembrane family 234 MOSC_N PF03476.16 gi|284163367|ref|YP_003401646.1| - 6.1e-17 61.6 0.0 2.5e-16 59.6 0.0 1.9 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|284163367|ref|YP_003401646.1| - 6e-08 32.8 0.0 9.4e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 MOSC domain SH3_16 PF18348.1 gi|284163368|ref|YP_003401647.1| - 0.094 12.5 0.0 0.3 10.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain 2-Hacid_dh_C PF02826.19 gi|284163372|ref|YP_003401651.1| - 7.6e-58 194.8 0.0 1.9e-57 193.5 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|284163372|ref|YP_003401651.1| - 2.3e-36 124.4 0.4 3.7e-36 123.7 0.4 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|284163372|ref|YP_003401651.1| - 0.00011 21.9 0.1 0.00011 21.9 0.1 2.5 3 0 0 3 3 3 1 ACT domain IlvN PF07991.12 gi|284163372|ref|YP_003401651.1| - 0.00057 19.5 0.1 0.0034 17.0 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh_C PF03720.15 gi|284163372|ref|YP_003401651.1| - 0.0042 17.5 0.0 0.015 15.8 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TrkA_N PF02254.18 gi|284163372|ref|YP_003401651.1| - 0.0043 17.3 0.6 0.02 15.2 0.0 2.5 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|284163372|ref|YP_003401651.1| - 0.0062 16.7 0.1 0.024 14.8 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|284163372|ref|YP_003401651.1| - 0.0065 16.9 0.0 0.02 15.3 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|284163372|ref|YP_003401651.1| - 0.058 13.5 0.4 1.9 8.5 0.0 2.4 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CARDB PF07705.11 gi|284163373|ref|YP_003401652.1| - 0.00013 22.1 0.2 0.00032 20.9 0.2 1.7 1 0 0 1 1 1 1 CARDB DUF11 PF01345.18 gi|284163373|ref|YP_003401652.1| - 0.034 14.4 1.6 0.2 12.0 1.6 2.1 1 1 0 1 1 1 0 Domain of unknown function DUF11 SpoIIIAH PF12685.7 gi|284163373|ref|YP_003401652.1| - 0.67 9.8 7.5 0.23 11.3 3.1 2.0 2 0 0 2 2 2 0 SpoIIIAH-like protein SDA1 PF05285.12 gi|284163373|ref|YP_003401652.1| - 5 6.5 19.2 1.7 8.0 12.3 2.1 2 0 0 2 2 2 0 SDA1 PRA-CH PF01502.18 gi|284163374|ref|YP_003401653.1| - 4.6e-35 119.3 0.1 7.2e-35 118.7 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Spc7 PF08317.11 gi|284163375|ref|YP_003401654.1| - 0.046 12.6 9.9 0.16 10.8 3.2 3.2 4 0 0 4 4 4 0 Spc7 kinetochore protein ECM11 PF15463.6 gi|284163375|ref|YP_003401654.1| - 1.7 9.2 6.6 0.27 11.8 1.0 2.5 3 0 0 3 3 3 0 Extracellular mutant protein 11 Usp PF00582.26 gi|284163376|ref|YP_003401655.1| - 2.1e-30 106.1 0.9 2.4e-30 105.9 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.13 gi|284163377|ref|YP_003401656.1| - 4.7e-17 62.3 8.3 7.4e-17 61.7 8.3 1.3 1 0 0 1 1 1 1 HPP family Peptidase_M50 PF02163.22 gi|284163378|ref|YP_003401657.1| - 1.2e-25 90.3 0.0 1.9e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|284163378|ref|YP_003401657.1| - 4.7e-20 71.7 11.0 7.3e-10 39.0 0.5 4.2 3 1 1 4 4 4 3 PDZ domain PDZ_6 PF17820.1 gi|284163378|ref|YP_003401657.1| - 3.1e-15 55.8 5.7 3e-12 46.2 1.4 3.3 3 0 0 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.6 gi|284163378|ref|YP_003401657.1| - 9.9e-10 38.3 2.2 5.2e-05 23.1 0.1 3.4 2 1 1 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.24 gi|284163378|ref|YP_003401657.1| - 3.4e-08 33.7 0.3 9.2e-05 22.7 0.1 3.4 2 1 1 3 3 3 1 PDZ domain DUF3357 PF11837.8 gi|284163378|ref|YP_003401657.1| - 8.9 6.8 15.2 1.6 9.2 0.8 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF3357) PGM_PMM_I PF02878.16 gi|284163379|ref|YP_003401658.1| - 4.3e-32 110.7 0.0 1e-31 109.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|284163379|ref|YP_003401658.1| - 2e-30 105.5 0.7 1.5e-29 102.6 0.1 2.5 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|284163379|ref|YP_003401658.1| - 1.2e-15 57.7 0.0 2.5e-15 56.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|284163379|ref|YP_003401658.1| - 1.5e-15 57.1 0.1 5.7e-15 55.2 0.1 2.1 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Plasmid_stab_B PF10784.9 gi|284163380|ref|YP_003401659.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Plasmid stability protein Pribosyltran_N PF13793.6 gi|284163382|ref|YP_003401661.1| - 2.9e-20 72.3 0.0 3.7e-19 68.8 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|284163382|ref|YP_003401661.1| - 1.5e-10 40.8 2.9 9e-10 38.3 0.9 2.4 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|284163382|ref|YP_003401661.1| - 3.8e-07 30.3 1.7 5.4e-07 29.8 0.4 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|284163382|ref|YP_003401661.1| - 4.1e-06 26.4 0.1 7e-06 25.6 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Big_3_5 PF16640.5 gi|284163383|ref|YP_003401662.1| - 0.00026 21.1 1.9 0.00026 21.1 1.9 3.2 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) YtkA PF13115.6 gi|284163383|ref|YP_003401662.1| - 0.028 15.0 0.0 9.3 6.9 0.0 3.7 4 0 0 4 4 4 0 YtkA-like Cohesin PF00963.18 gi|284163383|ref|YP_003401662.1| - 0.035 14.3 0.0 0.48 10.7 0.0 2.6 3 0 0 3 3 3 0 Cohesin domain PGF-CTERM PF18204.1 gi|284163383|ref|YP_003401662.1| - 0.66 10.0 7.2 1.7 8.7 7.2 1.7 1 0 0 1 1 1 0 PGF-CTERM motif DUF4232 PF14016.6 gi|284163383|ref|YP_003401662.1| - 0.85 9.8 14.6 0.086 13.0 4.1 3.5 2 1 0 3 3 3 0 Protein of unknown function (DUF4232) tRNA-synt_1 PF00133.22 gi|284163384|ref|YP_003401663.1| - 3.2e-176 587.1 0.9 4e-176 586.8 0.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|284163384|ref|YP_003401663.1| - 1.8e-29 102.6 0.0 3.6e-29 101.7 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|284163384|ref|YP_003401663.1| - 9e-27 93.8 0.2 3.3e-10 39.3 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|284163384|ref|YP_003401663.1| - 5.8e-07 29.2 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|284163384|ref|YP_003401663.1| - 0.00093 18.6 0.0 0.18 11.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain NADH-u_ox-rdase PF10785.9 gi|284163385|ref|YP_003401664.1| - 0.11 13.3 0.9 0.14 12.8 0.9 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit DUF2892 PF11127.8 gi|284163385|ref|YP_003401664.1| - 0.35 11.0 5.1 0.49 10.5 5.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) UDG PF03167.19 gi|284163386|ref|YP_003401665.1| - 2.8e-26 92.4 0.0 4.2e-26 91.8 0.0 1.3 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily GDPD PF03009.17 gi|284163387|ref|YP_003401666.1| - 5.4e-23 82.0 0.0 3.1e-21 76.3 0.0 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family NTP_transf_3 PF12804.7 gi|284163388|ref|YP_003401667.1| - 4.7e-16 59.5 0.6 1.4e-15 58.1 0.6 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|284163388|ref|YP_003401667.1| - 7.3e-05 22.5 0.0 0.00043 19.9 0.0 2.2 1 1 0 1 1 1 1 Nucleotidyl transferase IspD PF01128.19 gi|284163388|ref|YP_003401667.1| - 0.0016 18.2 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyphos_transf PF04464.14 gi|284163389|ref|YP_003401668.1| - 0.00029 19.9 0.0 0.00055 19.0 0.0 1.5 1 1 0 1 1 1 1 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase HIT PF01230.23 gi|284163391|ref|YP_003401670.1| - 7.1e-28 97.2 0.0 8.5e-28 97.0 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|284163391|ref|YP_003401670.1| - 4e-15 56.3 0.0 4.9e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|284163391|ref|YP_003401670.1| - 0.043 13.7 0.0 0.066 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 DUF1772 PF08592.11 gi|284163392|ref|YP_003401671.1| - 0.18 12.1 2.6 0.2 11.9 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF3040 PF11239.8 gi|284163392|ref|YP_003401671.1| - 0.27 11.5 4.0 0.36 11.1 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF5527 PF17665.1 gi|284163392|ref|YP_003401671.1| - 0.39 10.2 2.2 0.72 9.4 1.0 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5527) Arc_PepC_II PF06847.11 gi|284163393|ref|YP_003401672.1| - 7.4e-08 32.8 0.0 1.2e-05 25.8 0.0 2.5 2 0 0 2 2 2 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|284163393|ref|YP_003401672.1| - 7.2e-07 29.6 12.5 9.7e-07 29.2 11.7 1.6 1 1 0 1 1 1 1 Type IV leader peptidase family Fer2 PF00111.27 gi|284163394|ref|YP_003401673.1| - 1.4e-14 53.8 0.4 2.2e-14 53.1 0.4 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|284163394|ref|YP_003401673.1| - 0.088 12.9 0.1 0.19 11.8 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|284163395|ref|YP_003401674.1| - 2e-35 122.4 33.9 2e-35 122.4 33.9 1.9 2 1 0 2 2 2 1 Phosphate transporter family SpoVS PF04232.12 gi|284163395|ref|YP_003401674.1| - 5 6.9 6.9 0.72 9.6 0.8 2.5 2 1 1 3 3 3 0 Stage V sporulation protein S (SpoVS) Usp PF00582.26 gi|284163396|ref|YP_003401675.1| - 2.1e-25 89.9 3.2 2.4e-25 89.7 3.2 1.0 1 0 0 1 1 1 1 Universal stress protein family PHO4 PF01384.20 gi|284163397|ref|YP_003401676.1| - 1.7e-41 142.4 29.8 4.5e-41 141.0 29.8 1.7 1 1 0 1 1 1 1 Phosphate transporter family SpoVS PF04232.12 gi|284163397|ref|YP_003401676.1| - 0.79 9.5 3.6 2.9 7.7 0.2 2.9 2 2 1 3 3 3 0 Stage V sporulation protein S (SpoVS) DUF2884 PF11101.8 gi|284163398|ref|YP_003401677.1| - 0.013 15.0 0.2 0.017 14.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) DUF5082 PF16888.5 gi|284163398|ref|YP_003401677.1| - 0.028 14.7 0.3 0.037 14.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) DUF1697 PF08002.11 gi|284163398|ref|YP_003401677.1| - 0.06 13.8 0.3 0.079 13.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1697) CSN4_RPN5_eIF3a PF18420.1 gi|284163398|ref|YP_003401677.1| - 0.1 12.8 0.5 0.1 12.8 0.5 1.7 2 0 0 2 2 2 0 CSN4/RPN5/eIF3a helix turn helix domain ATP-cone PF03477.16 gi|284163398|ref|YP_003401677.1| - 0.11 13.1 1.5 0.16 12.6 1.5 1.2 1 0 0 1 1 1 0 ATP cone domain DUF5446 PF17522.2 gi|284163398|ref|YP_003401677.1| - 1 9.6 6.4 1.5 9.0 6.4 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5446) CitMHS PF03600.16 gi|284163399|ref|YP_003401678.1| - 5.3e-60 203.1 16.1 8.1e-60 202.5 16.1 1.3 1 0 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 gi|284163399|ref|YP_003401678.1| - 3.3e-24 85.8 36.4 2.8e-16 59.6 18.9 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|284163399|ref|YP_003401678.1| - 2.4e-18 65.7 6.5 2e-11 43.6 0.8 2.5 2 0 0 2 2 2 2 TrkA-C domain His_biosynth PF00977.21 gi|284163400|ref|YP_003401679.1| - 2.9e-77 259.2 4.3 3.2e-77 259.1 4.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|284163400|ref|YP_003401679.1| - 3.3e-12 46.1 0.0 5e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|284163400|ref|YP_003401679.1| - 7.4e-12 45.1 0.3 2.4e-07 30.3 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|284163400|ref|YP_003401679.1| - 3.3e-10 39.7 4.6 8.6e-05 22.0 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|284163400|ref|YP_003401679.1| - 4.8e-08 32.2 1.7 0.00061 18.7 0.3 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IGPS PF00218.21 gi|284163400|ref|YP_003401679.1| - 1.3e-06 27.8 0.6 0.00051 19.3 0.0 3.0 2 2 2 4 4 4 2 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|284163400|ref|YP_003401679.1| - 2.7e-06 27.0 10.5 2.3e-05 24.0 4.6 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|284163400|ref|YP_003401679.1| - 5.7e-06 25.9 0.6 0.001 18.5 0.1 2.2 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|284163400|ref|YP_003401679.1| - 2.2e-05 23.6 4.2 0.0027 16.8 1.3 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|284163400|ref|YP_003401679.1| - 7.6e-05 22.0 1.9 0.0076 15.5 0.4 2.5 1 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|284163400|ref|YP_003401679.1| - 0.0002 20.7 2.2 0.017 14.5 0.7 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase PcrB PF01884.17 gi|284163400|ref|YP_003401679.1| - 0.00031 20.3 6.2 0.044 13.2 0.2 2.7 2 1 1 3 3 3 2 PcrB family B12-binding PF02310.19 gi|284163400|ref|YP_003401679.1| - 0.0072 16.4 5.4 0.37 10.8 0.1 2.6 1 1 1 2 2 2 2 B12 binding domain FMN_dh PF01070.18 gi|284163400|ref|YP_003401679.1| - 0.0094 15.0 8.8 0.13 11.3 2.0 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.19 gi|284163400|ref|YP_003401679.1| - 0.05 13.0 1.2 0.26 10.6 0.1 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Glyco_trans_4_4 PF13579.6 gi|284163400|ref|YP_003401679.1| - 1.1 9.7 5.2 0.92 9.9 0.6 2.4 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain PA PF02225.22 gi|284163400|ref|YP_003401679.1| - 1.2 9.2 5.6 6.4 6.9 3.9 2.5 2 1 0 2 2 2 0 PA domain DUF347 PF03988.12 gi|284163401|ref|YP_003401680.1| - 0.35 11.1 0.3 0.35 11.1 0.3 1.9 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) IGPD PF00475.18 gi|284163402|ref|YP_003401681.1| - 1.4e-60 203.8 1.6 1.9e-60 203.4 1.6 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Lar_restr_allev PF14354.6 gi|284163403|ref|YP_003401682.1| - 0.0013 19.0 0.1 0.0042 17.4 0.1 1.9 1 0 0 1 1 1 1 Restriction alleviation protein Lar ACT PF01842.25 gi|284163404|ref|YP_003401683.1| - 5.7e-05 22.8 0.7 0.00018 21.2 0.1 2.1 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|284163404|ref|YP_003401683.1| - 0.0009 19.0 0.0 0.0028 17.4 0.0 1.8 2 0 0 2 2 2 1 ACT domain UPF0029 PF01205.19 gi|284163406|ref|YP_003401685.1| - 2.9e-29 101.5 0.0 3.9e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|284163406|ref|YP_003401685.1| - 9.4e-14 51.0 0.7 2e-13 50.0 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|284163406|ref|YP_003401685.1| - 0.00013 21.9 0.0 0.00026 21.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus DctM PF06808.12 gi|284163407|ref|YP_003401686.1| - 1.1e-78 264.9 62.8 1.3e-55 189.0 32.2 2.8 3 0 0 3 3 3 2 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 gi|284163408|ref|YP_003401687.1| - 6.8e-22 77.6 0.0 1.1e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1_3 PF16868.5 gi|284163409|ref|YP_003401688.1| - 3e-70 236.9 2.4 3.7e-70 236.6 2.4 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|284163409|ref|YP_003401688.1| - 7.8e-12 45.3 3.6 1.9e-11 44.0 3.6 1.6 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|284163409|ref|YP_003401688.1| - 1.6e-10 41.3 3.1 6.2e-10 39.4 0.5 2.1 2 0 0 2 2 2 1 NMT1/THI5 like TAT_signal PF10518.9 gi|284163409|ref|YP_003401688.1| - 0.014 15.2 0.1 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Plasmid_stab_B PF10784.9 gi|284163410|ref|YP_003401689.1| - 0.064 13.1 0.1 0.18 11.6 0.1 1.7 1 0 0 1 1 1 0 Plasmid stability protein DUF2929 PF11151.8 gi|284163410|ref|YP_003401689.1| - 0.17 12.2 0.4 0.17 12.2 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2929) Peptidase_S9 PF00326.21 gi|284163411|ref|YP_003401690.1| - 1.3e-54 184.9 0.2 2.1e-54 184.2 0.2 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|284163411|ref|YP_003401690.1| - 2.6e-14 52.7 1.0 2.4e-08 33.7 0.1 5.2 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.20 gi|284163411|ref|YP_003401690.1| - 3.2e-08 33.5 0.4 7.8e-05 22.4 0.2 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|284163411|ref|YP_003401690.1| - 1.8e-07 31.0 0.0 3.2e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|284163411|ref|YP_003401690.1| - 1.2e-05 24.1 0.4 0.0017 17.1 0.4 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|284163411|ref|YP_003401690.1| - 7e-05 22.2 1.1 0.079 12.2 0.3 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9_N PF02897.15 gi|284163411|ref|YP_003401690.1| - 0.00088 18.2 0.0 0.91 8.3 0.0 3.2 2 1 1 3 3 3 1 Prolyl oligopeptidase, N-terminal beta-propeller domain DPPIV_N PF00930.21 gi|284163411|ref|YP_003401690.1| - 0.001 17.9 0.0 0.41 9.4 0.0 4.0 4 1 1 5 5 5 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.10 gi|284163411|ref|YP_003401690.1| - 0.011 15.8 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 TAP-like protein BAAT_C PF08840.11 gi|284163411|ref|YP_003401690.1| - 0.09 12.7 0.0 0.74 9.7 0.0 2.0 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2892 PF11127.8 gi|284163412|ref|YP_003401691.1| - 9.4e-18 64.0 0.4 1e-17 63.9 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF4203 PF13886.6 gi|284163412|ref|YP_003401691.1| - 0.038 13.6 0.1 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Cupin_2 PF07883.11 gi|284163413|ref|YP_003401692.1| - 1.2e-10 40.9 0.8 1.5e-10 40.6 0.8 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|284163413|ref|YP_003401692.1| - 3.7e-05 23.7 0.0 4.2e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.7 gi|284163413|ref|YP_003401692.1| - 0.0013 18.6 0.0 0.0016 18.3 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain KduI PF04962.12 gi|284163413|ref|YP_003401692.1| - 0.0015 17.9 0.0 0.0017 17.7 0.0 1.0 1 0 0 1 1 1 1 KduI/IolB family Cupin_1 PF00190.22 gi|284163413|ref|YP_003401692.1| - 0.004 16.8 0.0 0.006 16.2 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|284163413|ref|YP_003401692.1| - 0.056 13.1 0.0 0.082 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) UPRTase PF14681.6 gi|284163414|ref|YP_003401693.1| - 1.3e-47 162.0 0.0 1.5e-47 161.7 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|284163414|ref|YP_003401693.1| - 1.1e-09 38.0 0.1 1.5e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|284163414|ref|YP_003401693.1| - 0.15 11.5 0.1 0.25 10.8 0.1 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase Tape_meas_lam_C PF09718.10 gi|284163416|ref|YP_003401695.1| - 0.026 14.6 0.2 0.089 12.9 0.1 1.9 2 0 0 2 2 2 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) BPD_transp_1 PF00528.22 gi|284163417|ref|YP_003401696.1| - 4e-16 59.3 5.7 4e-16 59.3 5.7 2.4 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|284163418|ref|YP_003401697.1| - 2.4e-33 115.5 0.0 3.1e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163418|ref|YP_003401697.1| - 3.5e-11 43.5 0.0 0.0002 21.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284163418|ref|YP_003401697.1| - 1e-06 28.4 0.0 2.7e-06 27.0 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284163418|ref|YP_003401697.1| - 0.0001 22.0 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|284163418|ref|YP_003401697.1| - 0.00021 21.7 0.2 0.00039 20.9 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284163418|ref|YP_003401697.1| - 0.00038 20.4 0.0 0.00091 19.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|284163418|ref|YP_003401697.1| - 0.00096 18.9 0.0 0.0014 18.4 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|284163418|ref|YP_003401697.1| - 0.0019 18.7 0.0 0.0042 17.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|284163418|ref|YP_003401697.1| - 0.0025 18.0 0.0 0.0045 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284163418|ref|YP_003401697.1| - 0.0026 18.0 0.0 0.0041 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|284163418|ref|YP_003401697.1| - 0.0035 17.1 0.0 0.028 14.1 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|284163418|ref|YP_003401697.1| - 0.0036 16.2 0.0 0.77 8.5 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_18 PF13238.6 gi|284163418|ref|YP_003401697.1| - 0.023 15.2 0.0 0.037 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|284163418|ref|YP_003401697.1| - 0.025 14.5 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|284163418|ref|YP_003401697.1| - 0.036 13.6 0.1 0.086 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|284163418|ref|YP_003401697.1| - 0.038 13.4 0.0 0.93 8.8 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|284163418|ref|YP_003401697.1| - 0.043 13.8 0.0 0.098 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.15 gi|284163418|ref|YP_003401697.1| - 0.13 11.1 0.1 0.78 8.5 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein cobW PF02492.19 gi|284163418|ref|YP_003401697.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|284163418|ref|YP_003401697.1| - 0.15 10.7 0.0 5.1 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|284163418|ref|YP_003401697.1| - 0.16 11.9 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain SbcCD_C PF13558.6 gi|284163418|ref|YP_003401697.1| - 0.17 12.1 0.4 2.3 8.5 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|284163419|ref|YP_003401698.1| - 8.6e-16 58.2 10.9 8.6e-16 58.2 10.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|284163420|ref|YP_003401699.1| - 7e-55 185.9 0.1 8.1e-55 185.7 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|284163420|ref|YP_003401699.1| - 6.3e-06 26.4 0.0 1.8e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site TAT_signal PF10518.9 gi|284163420|ref|YP_003401699.1| - 0.0038 17.0 0.1 0.0087 15.9 0.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PHO4 PF01384.20 gi|284163421|ref|YP_003401700.1| - 3.1e-44 151.4 33.8 3.1e-44 151.4 33.8 1.6 1 1 1 2 2 2 1 Phosphate transporter family COX1 PF00115.20 gi|284163421|ref|YP_003401700.1| - 0.0003 19.8 7.8 0.0003 19.8 7.8 3.1 1 1 2 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I Phage_holin_3_6 PF07332.11 gi|284163422|ref|YP_003401701.1| - 2.8 8.0 20.4 3.1 7.9 6.1 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2975 PF11188.8 gi|284163422|ref|YP_003401701.1| - 3.9 7.4 12.5 1.2 9.0 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) BAT PF15915.5 gi|284163423|ref|YP_003401702.1| - 9.2e-44 149.1 13.3 9.2e-44 149.1 13.3 3.4 3 1 1 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|284163423|ref|YP_003401702.1| - 1.9e-26 93.0 2.2 7.4e-19 68.4 0.1 2.9 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|284163423|ref|YP_003401702.1| - 2.3e-18 65.7 0.0 5.5e-18 64.5 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|284163423|ref|YP_003401702.1| - 7.3e-16 58.3 0.1 3.4e-13 49.7 0.0 3.1 2 1 1 3 3 3 1 Response regulator receiver domain GAF_3 PF13492.6 gi|284163423|ref|YP_003401702.1| - 1.3e-10 41.7 0.7 0.00089 19.6 0.0 3.3 3 0 0 3 3 3 2 GAF domain GAF PF01590.26 gi|284163423|ref|YP_003401702.1| - 4.5e-05 24.1 1.8 0.0016 19.1 0.0 3.2 4 0 0 4 4 4 1 GAF domain GerE PF00196.19 gi|284163423|ref|YP_003401702.1| - 0.041 13.4 0.0 0.47 10.1 0.0 2.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Virul_Fac PF10139.9 gi|284163423|ref|YP_003401702.1| - 0.62 8.2 4.8 3 5.9 0.5 2.1 2 0 0 2 2 2 0 Putative bacterial virulence factor HalOD1 PF18545.1 gi|284163424|ref|YP_003401703.1| - 1.8e-23 82.6 0.4 2.3e-23 82.3 0.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 zf-FCS PF06467.14 gi|284163425|ref|YP_003401704.1| - 0.019 14.9 1.1 0.045 13.7 1.1 1.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|284163425|ref|YP_003401704.1| - 0.026 14.5 0.3 0.14 12.1 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0020 PF01170.18 gi|284163427|ref|YP_003401706.1| - 5e-21 75.3 0.1 4.4e-20 72.2 0.1 2.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|284163427|ref|YP_003401706.1| - 4.2e-06 27.4 0.0 9.2e-06 26.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|284163427|ref|YP_003401706.1| - 6.2e-05 23.1 0.0 0.0002 21.5 0.0 1.8 1 1 0 1 1 1 1 THUMP domain AviRa PF11599.8 gi|284163427|ref|YP_003401706.1| - 0.00021 20.8 0.0 0.039 13.4 0.0 2.2 2 0 0 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_11 PF08241.12 gi|284163427|ref|YP_003401706.1| - 0.00036 21.1 0.0 0.00094 19.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284163427|ref|YP_003401706.1| - 0.0074 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284163427|ref|YP_003401706.1| - 0.061 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|284163427|ref|YP_003401706.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.18 gi|284163427|ref|YP_003401706.1| - 0.14 11.8 0.0 0.35 10.5 0.0 1.5 2 0 0 2 2 2 0 DNA methylase TBP PF00352.21 gi|284163428|ref|YP_003401707.1| - 1.3e-57 191.7 0.0 5.1e-28 96.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|284163428|ref|YP_003401707.1| - 2e-05 24.8 0.0 0.01 16.1 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|284163428|ref|YP_003401707.1| - 0.00017 21.6 0.0 0.48 10.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF192 PF02643.15 gi|284163428|ref|YP_003401707.1| - 0.17 12.0 0.0 0.72 10.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized ACR, COG1430 SAM_DrpA PF18255.1 gi|284163429|ref|YP_003401708.1| - 0.05 13.9 0.0 0.077 13.2 0.0 1.3 1 0 0 1 1 1 0 DNA processing protein A sterile alpha motif domain HisG PF01634.18 gi|284163430|ref|YP_003401709.1| - 1.8e-48 164.5 0.2 2.6e-48 164.0 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|284163430|ref|YP_003401709.1| - 9.4e-26 89.8 0.0 2e-25 88.7 0.0 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain YbbR PF07949.12 gi|284163430|ref|YP_003401709.1| - 0.0084 16.4 1.1 0.82 10.0 0.2 2.5 1 1 1 2 2 2 2 YbbR-like protein NMT1 PF09084.11 gi|284163430|ref|YP_003401709.1| - 0.0093 15.9 0.0 0.12 12.3 0.0 2.4 2 1 0 2 2 2 1 NMT1/THI5 like E1-E2_ATPase PF00122.20 gi|284163431|ref|YP_003401710.1| - 1.7e-48 164.5 0.6 1.7e-48 164.5 0.6 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|284163431|ref|YP_003401710.1| - 1e-43 150.1 7.7 1.5e-43 149.5 7.7 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|284163431|ref|YP_003401710.1| - 2.8e-06 27.3 0.1 4.1e-05 23.5 0.2 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284163431|ref|YP_003401710.1| - 1.1e-05 25.9 0.4 6.1e-05 23.5 0.4 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284163431|ref|YP_003401710.1| - 0.072 13.2 0.0 0.38 10.8 0.1 2.1 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase GRP PF07172.11 gi|284163431|ref|YP_003401710.1| - 1.5 9.5 13.5 3.7 8.3 13.5 1.6 1 0 0 1 1 1 0 Glycine rich protein family MerB PF03243.15 gi|284163432|ref|YP_003401711.1| - 1.1e-31 109.6 0.1 1.8e-31 108.9 0.1 1.2 1 0 0 1 1 1 1 Alkylmercury lyase HTH_10 PF04967.12 gi|284163433|ref|YP_003401712.1| - 1.7e-19 69.3 0.1 3.1e-19 68.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284163433|ref|YP_003401712.1| - 0.00087 18.9 0.2 0.013 15.2 0.2 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284163433|ref|YP_003401712.1| - 0.011 15.3 0.4 0.03 13.9 0.4 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_terminase PF10668.9 gi|284163433|ref|YP_003401712.1| - 0.035 14.1 0.1 0.078 13.0 0.0 1.6 2 0 0 2 2 2 0 Phage terminase small subunit Fe_dep_repress PF01325.19 gi|284163433|ref|YP_003401712.1| - 0.073 13.3 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|284163433|ref|YP_003401712.1| - 0.074 12.9 0.1 0.23 11.4 0.1 1.9 2 0 0 2 2 2 0 MarR family Sigma70_r3 PF04539.16 gi|284163433|ref|YP_003401712.1| - 0.093 12.8 0.6 0.26 11.4 0.5 1.9 1 1 0 1 1 1 0 Sigma-70 region 3 ABC_tran PF00005.27 gi|284163434|ref|YP_003401713.1| - 2.1e-26 93.1 0.0 2.9e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163434|ref|YP_003401713.1| - 1.6e-15 57.8 0.0 3.7e-11 43.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284163434|ref|YP_003401713.1| - 3.1e-07 31.0 0.0 6.1e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|284163434|ref|YP_003401713.1| - 0.0031 17.2 0.0 0.0052 16.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284163434|ref|YP_003401713.1| - 0.013 16.0 0.0 0.019 15.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|284163434|ref|YP_003401713.1| - 0.04 13.3 0.0 4.9 6.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|284163434|ref|YP_003401713.1| - 0.042 13.6 0.0 0.11 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|284163434|ref|YP_003401713.1| - 0.18 11.3 0.1 3 7.3 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain CLP1_P PF16575.5 gi|284163434|ref|YP_003401713.1| - 0.23 11.2 0.0 0.38 10.5 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC2_membrane_2 PF12679.7 gi|284163435|ref|YP_003401714.1| - 6.4e-43 147.1 8.1 1.2e-42 146.2 8.1 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284163435|ref|YP_003401714.1| - 8e-06 25.6 0.9 8e-06 25.6 0.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284163435|ref|YP_003401714.1| - 9.1e-05 22.5 4.5 0.00022 21.2 4.5 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284163435|ref|YP_003401714.1| - 0.0014 17.9 7.3 0.0014 17.9 7.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein HMA PF00403.26 gi|284163436|ref|YP_003401715.1| - 1.2e-19 70.5 0.6 1.3e-19 70.4 0.6 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF4162 PF13732.6 gi|284163436|ref|YP_003401715.1| - 0.025 15.3 0.1 0.027 15.2 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) DUF4969 PF16339.5 gi|284163436|ref|YP_003401715.1| - 0.12 12.7 0.3 0.15 12.4 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) HTH_AsnC-type PF13404.6 gi|284163437|ref|YP_003401716.1| - 1.1e-15 57.1 0.3 2.4e-15 56.1 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284163437|ref|YP_003401716.1| - 1.6e-15 56.4 0.0 2.3e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284163437|ref|YP_003401716.1| - 2.8e-08 33.5 0.1 4.4e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|284163437|ref|YP_003401716.1| - 5.5e-08 32.7 0.1 1.4e-07 31.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284163437|ref|YP_003401716.1| - 1.9e-06 27.7 0.0 2.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284163437|ref|YP_003401716.1| - 5.6e-05 22.9 0.0 8.2e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284163437|ref|YP_003401716.1| - 8.5e-05 22.3 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain YHS PF04945.13 gi|284163437|ref|YP_003401716.1| - 0.00055 20.0 0.7 0.001 19.1 0.7 1.3 1 0 0 1 1 1 1 YHS domain TrmB PF01978.19 gi|284163437|ref|YP_003401716.1| - 0.00097 19.0 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Arc_trans_TRASH PF08394.10 gi|284163437|ref|YP_003401716.1| - 0.0012 19.1 2.2 0.0019 18.5 2.2 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_27 PF13463.6 gi|284163437|ref|YP_003401716.1| - 0.0014 19.1 0.0 0.0023 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain LIM PF00412.22 gi|284163437|ref|YP_003401716.1| - 0.002 18.3 0.7 0.0032 17.6 0.7 1.4 1 0 0 1 1 1 1 LIM domain HTH_1 PF00126.27 gi|284163437|ref|YP_003401716.1| - 0.01 15.8 0.0 0.031 14.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Ta0938 PF11494.8 gi|284163437|ref|YP_003401716.1| - 0.019 15.2 0.6 0.047 14.0 0.6 1.6 1 0 0 1 1 1 0 Ta0938 Fe_dep_repress PF01325.19 gi|284163437|ref|YP_003401716.1| - 0.03 14.5 0.0 0.049 13.8 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain zf-FCS PF06467.14 gi|284163437|ref|YP_003401716.1| - 0.032 14.2 3.0 0.053 13.5 3.0 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif HTH_CodY PF08222.11 gi|284163437|ref|YP_003401716.1| - 0.055 13.0 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain ATPase-cat_bd PF12156.8 gi|284163437|ref|YP_003401716.1| - 0.084 13.6 3.1 0.16 12.7 3.1 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase LexA_DNA_bind PF01726.16 gi|284163437|ref|YP_003401716.1| - 0.085 12.6 0.0 0.2 11.4 0.0 1.7 1 1 0 1 1 1 0 LexA DNA binding domain HxlR PF01638.17 gi|284163437|ref|YP_003401716.1| - 0.091 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_11 PF08279.12 gi|284163437|ref|YP_003401716.1| - 0.1 12.6 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|284163437|ref|YP_003401716.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 CpXC PF14353.6 gi|284163437|ref|YP_003401716.1| - 0.26 11.3 3.3 11 6.1 0.3 2.6 2 1 1 3 3 3 0 CpXC protein HypA PF01155.19 gi|284163437|ref|YP_003401716.1| - 0.42 10.7 1.7 0.69 10.0 1.7 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284163437|ref|YP_003401716.1| - 4.4 7.5 7.4 10 6.3 2.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain E1-E2_ATPase PF00122.20 gi|284163438|ref|YP_003401717.1| - 7.4e-48 162.5 1.2 1.9e-47 161.2 1.2 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|284163438|ref|YP_003401717.1| - 4.9e-45 154.4 9.2 1e-44 153.3 9.2 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|284163438|ref|YP_003401717.1| - 1.8e-28 98.8 0.1 7.2e-15 55.2 0.0 2.9 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|284163438|ref|YP_003401717.1| - 1e-06 28.7 0.8 0.0033 17.2 0.8 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284163438|ref|YP_003401717.1| - 0.0026 18.2 1.4 0.015 15.7 0.4 2.5 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|284163438|ref|YP_003401717.1| - 0.015 15.4 1.0 0.13 12.4 0.0 3.0 4 0 0 4 4 4 0 Haloacid dehalogenase-like hydrolase SpoIIM PF01944.17 gi|284163439|ref|YP_003401718.1| - 2.4e-25 89.4 15.5 4e-25 88.7 15.5 1.3 1 0 0 1 1 1 1 Stage II sporulation protein M GAPES3 PF17154.4 gi|284163439|ref|YP_003401718.1| - 0.16 11.9 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain Amidohydro_1 PF01979.20 gi|284163440|ref|YP_003401719.1| - 9e-66 222.5 3.2 1.1e-65 222.3 3.2 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284163440|ref|YP_003401719.1| - 2.7e-22 79.9 11.5 4.4e-19 69.3 7.5 2.3 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|284163440|ref|YP_003401719.1| - 0.0022 17.4 0.0 0.0056 16.1 0.0 1.6 2 0 0 2 2 2 1 Adenosine/AMP deaminase RNA_pol_3_Rpc31 PF11705.8 gi|284163441|ref|YP_003401720.1| - 3.7 7.8 26.0 5.2 7.3 3.1 2.4 2 0 0 2 2 2 0 DNA-directed RNA polymerase III subunit Rpc31 AdoHcyase PF05221.17 gi|284163442|ref|YP_003401721.1| - 6.5e-51 173.3 0.0 3.4e-26 92.1 0.4 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|284163442|ref|YP_003401721.1| - 4.2e-47 160.2 0.8 1e-46 159.0 0.2 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|284163442|ref|YP_003401721.1| - 2.9e-09 36.5 0.1 5.6e-09 35.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284163442|ref|YP_003401721.1| - 3.4e-06 26.7 0.7 8.5e-06 25.4 0.2 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|284163442|ref|YP_003401721.1| - 0.019 15.2 0.1 0.046 14.0 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 gi|284163442|ref|YP_003401721.1| - 0.028 14.5 0.0 0.057 13.5 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GDI PF00996.18 gi|284163442|ref|YP_003401721.1| - 0.14 10.6 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor 3HCDH_N PF02737.18 gi|284163442|ref|YP_003401721.1| - 0.2 11.5 1.4 0.34 10.8 0.3 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PAS_9 PF13426.7 gi|284163443|ref|YP_003401722.1| - 3.1e-10 40.2 0.0 5.2e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|284163443|ref|YP_003401722.1| - 1.5e-07 31.7 1.0 3.5e-07 30.4 0.0 2.0 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 gi|284163443|ref|YP_003401722.1| - 1.3e-05 25.1 0.0 2.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|284163443|ref|YP_003401722.1| - 0.00024 21.0 0.0 0.00056 19.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|284163443|ref|YP_003401722.1| - 0.00046 20.4 0.0 0.001 19.3 0.0 1.6 1 0 0 1 1 1 1 PAS fold NQRA PF05896.11 gi|284163443|ref|YP_003401722.1| - 0.12 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HalOD1 PF18545.1 gi|284163444|ref|YP_003401723.1| - 7.4e-26 90.2 0.6 8.4e-26 90.0 0.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_31 PF13560.6 gi|284163444|ref|YP_003401723.1| - 0.12 12.7 0.1 0.33 11.3 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain PAS_3 PF08447.12 gi|284163445|ref|YP_003401724.1| - 3e-125 408.8 4.6 2.6e-20 72.5 0.3 10.4 10 0 0 10 10 10 10 PAS fold PAS_4 PF08448.10 gi|284163445|ref|YP_003401724.1| - 7.1e-102 335.3 51.4 2.1e-16 60.1 0.3 10.8 10 0 0 10 10 10 10 PAS fold PAS PF00989.25 gi|284163445|ref|YP_003401724.1| - 3.9e-88 291.0 14.3 2.6e-18 66.0 0.0 10.4 10 0 0 10 10 10 8 PAS fold PAS_9 PF13426.7 gi|284163445|ref|YP_003401724.1| - 7e-88 289.7 2.4 3.6e-12 46.5 0.0 10.4 10 0 0 10 10 10 9 PAS domain BAT PF15915.5 gi|284163445|ref|YP_003401724.1| - 1.3e-47 161.6 19.8 1.3e-47 161.6 19.8 4.8 4 0 0 4 4 3 1 GAF and HTH_10 associated domain PAS_8 PF13188.7 gi|284163445|ref|YP_003401724.1| - 8.7e-31 105.4 6.3 1.4e-09 37.7 0.0 6.3 5 0 0 5 5 5 5 PAS domain GAF_2 PF13185.6 gi|284163445|ref|YP_003401724.1| - 2.1e-24 86.4 13.4 1.3e-17 64.4 0.7 5.9 6 0 0 6 6 6 2 GAF domain HTH_10 PF04967.12 gi|284163445|ref|YP_003401724.1| - 1.1e-15 57.1 0.0 2.5e-15 56.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_10 PF13596.6 gi|284163445|ref|YP_003401724.1| - 9.5e-11 42.2 0.0 0.0031 18.1 0.0 5.4 6 0 0 6 6 6 2 PAS domain PAS_11 PF14598.6 gi|284163445|ref|YP_003401724.1| - 1.3e-06 28.5 0.0 15 5.8 0.0 6.8 8 0 0 8 8 8 0 PAS domain GAF_3 PF13492.6 gi|284163445|ref|YP_003401724.1| - 2.4e-06 27.9 0.1 0.00017 21.9 0.0 3.1 3 0 0 3 3 2 1 GAF domain PAS_7 PF12860.7 gi|284163445|ref|YP_003401724.1| - 4.9e-06 26.7 14.8 18 5.6 0.0 10.2 9 2 0 9 9 9 0 PAS fold GAF PF01590.26 gi|284163445|ref|YP_003401724.1| - 9.1e-06 26.3 0.0 0.00022 21.9 0.0 3.3 3 0 0 3 3 3 1 GAF domain Sigma70_r4 PF04545.16 gi|284163445|ref|YP_003401724.1| - 0.00098 18.6 0.2 0.0039 16.7 0.2 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|284163445|ref|YP_003401724.1| - 0.0052 16.6 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r3 PF04539.16 gi|284163445|ref|YP_003401724.1| - 0.0096 16.0 2.0 2.8 8.1 0.0 4.1 4 0 0 4 4 4 1 Sigma-70 region 3 HAS-barrel PF09378.10 gi|284163445|ref|YP_003401724.1| - 0.052 13.7 8.1 0.44 10.7 0.1 5.6 5 0 0 5 5 5 0 HAS barrel domain DUF4099 PF13351.6 gi|284163445|ref|YP_003401724.1| - 0.078 13.3 0.0 33 4.8 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4099) Sigma70_r4_2 PF08281.12 gi|284163445|ref|YP_003401724.1| - 0.095 12.4 0.0 0.57 9.9 0.0 2.4 1 0 0 1 1 1 0 Sigma-70, region 4 ChW PF07538.11 gi|284163445|ref|YP_003401724.1| - 0.32 11.0 0.9 1.4e+02 2.5 0.1 3.8 3 0 0 3 3 3 0 Clostridial hydrophobic W CPBP PF02517.16 gi|284163446|ref|YP_003401725.1| - 3.7e-18 65.7 4.9 3.7e-18 65.7 4.9 2.6 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF2663 PF10864.8 gi|284163446|ref|YP_003401725.1| - 0.44 11.0 2.6 23 5.4 0.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2663) DUF1129 PF06570.11 gi|284163446|ref|YP_003401725.1| - 0.7 9.4 14.4 0.11 12.0 4.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Abhydrolase_9_N PF15420.6 gi|284163446|ref|YP_003401725.1| - 1.1 9.2 10.4 0.17 11.9 4.9 2.1 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus Mlo PF03094.15 gi|284163446|ref|YP_003401725.1| - 1.3 7.3 4.0 0.41 9.0 1.4 1.3 1 1 0 1 1 1 0 Mlo family Hjc PF01870.18 gi|284163447|ref|YP_003401726.1| - 9.3e-30 102.5 0.0 1.3e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) Zn-ribbon_8 PF09723.10 gi|284163448|ref|YP_003401727.1| - 0.0042 17.2 0.2 0.0078 16.3 0.2 1.5 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284163448|ref|YP_003401727.1| - 0.0045 16.5 0.1 0.0045 16.5 0.1 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|284163448|ref|YP_003401727.1| - 0.064 13.2 0.5 0.1 12.5 0.5 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.11 gi|284163448|ref|YP_003401727.1| - 0.13 12.3 1.2 0.26 11.3 1.2 1.5 1 1 0 1 1 1 0 Zinc-ribbon containing domain Peptidase_M48 PF01435.18 gi|284163449|ref|YP_003401728.1| - 4.6e-22 78.8 5.3 2.7e-11 43.6 0.2 2.8 3 0 0 3 3 3 2 Peptidase family M48 Peptidase_M56 PF05569.11 gi|284163449|ref|YP_003401728.1| - 2.7e-05 23.5 4.4 0.011 14.9 4.4 2.5 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF4157 PF13699.6 gi|284163449|ref|YP_003401728.1| - 0.054 13.7 0.3 0.14 12.4 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) SprT-like PF10263.9 gi|284163449|ref|YP_003401728.1| - 0.059 13.2 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF2268 PF10026.9 gi|284163449|ref|YP_003401728.1| - 0.07 12.7 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) BSP PF04450.12 gi|284163449|ref|YP_003401728.1| - 0.13 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria PMP1_2 PF08114.11 gi|284163449|ref|YP_003401728.1| - 8 6.3 7.2 1.6 8.6 2.0 2.5 2 0 0 2 2 2 0 ATPase proteolipid family Acyl-CoA_dh_1 PF00441.24 gi|284163450|ref|YP_003401729.1| - 4.4e-30 104.9 4.8 3.6e-28 98.7 4.8 2.5 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 gi|284163450|ref|YP_003401729.1| - 7.3e-18 65.0 0.0 2.1e-17 63.5 0.0 1.8 1 0 0 1 1 1 1 Adaptive response protein AidB N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284163450|ref|YP_003401729.1| - 1.1e-16 60.8 0.0 1.3e-15 57.4 0.0 2.3 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284163450|ref|YP_003401729.1| - 0.00013 22.2 17.9 0.0031 17.8 11.2 3.5 2 2 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain PNP_UDP_1 PF01048.20 gi|284163450|ref|YP_003401729.1| - 0.001 18.4 1.0 0.002 17.4 1.0 1.5 1 0 0 1 1 1 1 Phosphorylase superfamily Acyl-CoA_dh_C PF12806.7 gi|284163450|ref|YP_003401729.1| - 0.0041 17.3 0.3 0.011 15.9 0.3 1.7 1 0 0 1 1 1 1 Acetyl-CoA dehydrogenase C-terminal like SWIM PF04434.17 gi|284163451|ref|YP_003401730.1| - 0.0016 18.0 0.1 0.0034 17.0 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger AA_permease PF00324.21 gi|284163452|ref|YP_003401731.1| - 0.49 8.9 4.9 0.59 8.7 4.9 1.0 1 0 0 1 1 1 0 Amino acid permease ETRAMP PF09716.10 gi|284163452|ref|YP_003401731.1| - 0.65 10.1 2.1 4.8 7.3 0.2 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) SLATT_fungal PF18142.1 gi|284163453|ref|YP_003401732.1| - 1.3 9.0 5.4 1.9 8.5 5.4 1.3 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain DNA_primase_lrg PF04104.14 gi|284163454|ref|YP_003401733.1| - 5.8e-35 121.0 0.0 8.8e-35 120.4 0.0 1.2 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Abhydrolase_1 PF00561.20 gi|284163455|ref|YP_003401734.1| - 3e-25 89.3 0.0 1.2e-22 80.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284163455|ref|YP_003401734.1| - 5.7e-23 82.7 4.8 6.8e-23 82.4 4.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284163455|ref|YP_003401734.1| - 2.5e-14 53.1 0.0 8.6e-14 51.4 0.0 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|284163455|ref|YP_003401734.1| - 0.00013 22.0 0.0 0.00022 21.3 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.18 gi|284163455|ref|YP_003401734.1| - 0.0039 16.8 0.0 0.028 14.0 0.0 2.0 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.7 gi|284163455|ref|YP_003401734.1| - 0.0042 16.9 0.0 3 7.6 0.1 2.6 2 1 1 3 3 3 2 Alpha/beta hydrolase family Patatin PF01734.22 gi|284163455|ref|YP_003401734.1| - 0.011 15.9 0.0 0.017 15.3 0.0 1.3 1 0 0 1 1 1 0 Patatin-like phospholipase Peptidase_S9 PF00326.21 gi|284163455|ref|YP_003401734.1| - 0.011 15.2 0.0 0.1 12.1 0.0 2.2 2 0 0 2 2 2 0 Prolyl oligopeptidase family DUF915 PF06028.11 gi|284163455|ref|YP_003401734.1| - 0.016 14.6 0.0 0.036 13.4 0.0 1.6 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_3 PF07859.13 gi|284163455|ref|YP_003401734.1| - 0.018 14.9 0.0 0.039 13.8 0.0 1.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold DUF2048 PF09752.9 gi|284163455|ref|YP_003401734.1| - 0.098 11.7 0.0 3.6 6.6 0.0 2.2 2 1 0 2 2 2 0 Abhydrolase domain containing 18 UPF0227 PF05728.12 gi|284163455|ref|YP_003401734.1| - 0.11 12.4 0.0 1.9 8.4 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) FSH1 PF03959.13 gi|284163455|ref|YP_003401734.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PGAP1 PF07819.13 gi|284163455|ref|YP_003401734.1| - 0.16 11.7 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 PGAP1-like protein Abhydrolase_2 PF02230.16 gi|284163455|ref|YP_003401734.1| - 0.21 11.4 0.0 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase TetR_C_16 PF17920.1 gi|284163455|ref|YP_003401734.1| - 0.39 11.0 2.2 3.3 8.0 0.2 3.0 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain Thioesterase PF00975.20 gi|284163455|ref|YP_003401734.1| - 3.3 7.7 5.2 11 6.1 0.3 2.8 2 1 1 3 3 3 0 Thioesterase domain HalOD1 PF18545.1 gi|284163456|ref|YP_003401735.1| - 2.8e-25 88.4 0.0 3.8e-25 87.9 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 EF-hand_9 PF14658.6 gi|284163456|ref|YP_003401735.1| - 0.25 11.7 1.6 3.7 8.0 0.1 2.1 1 1 1 2 2 2 0 EF-hand domain PCNA_N PF00705.18 gi|284163457|ref|YP_003401736.1| - 4e-10 39.5 0.1 7e-10 38.7 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|284163457|ref|YP_003401736.1| - 1.8e-06 28.1 0.0 1.2e-05 25.5 0.0 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|284163457|ref|YP_003401736.1| - 0.038 13.4 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 Rad9 Rad1 PF02144.16 gi|284163457|ref|YP_003401736.1| - 0.043 12.9 0.0 0.44 9.6 0.0 2.1 1 1 1 2 2 2 0 Repair protein Rad1/Rec1/Rad17 Hus1 PF04005.12 gi|284163457|ref|YP_003401736.1| - 0.18 10.9 0.0 0.31 10.1 0.0 1.4 1 1 0 1 1 1 0 Hus1-like protein UDG PF03167.19 gi|284163459|ref|YP_003401738.1| - 3.9e-35 121.1 0.0 6.9e-35 120.3 0.0 1.4 1 1 0 1 1 1 1 Uracil DNA glycosylase superfamily FtsJ PF01728.19 gi|284163460|ref|YP_003401739.1| - 2.9e-53 180.6 0.0 3.5e-53 180.3 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|284163460|ref|YP_003401739.1| - 1.7e-14 53.5 0.9 3e-14 52.7 0.2 1.8 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.6 gi|284163460|ref|YP_003401739.1| - 8.7e-08 32.1 0.0 1.6e-07 31.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284163460|ref|YP_003401739.1| - 9.7e-05 23.0 0.1 0.00031 21.4 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284163460|ref|YP_003401739.1| - 0.0045 16.8 0.0 0.011 15.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|284163460|ref|YP_003401739.1| - 0.026 14.2 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|284163460|ref|YP_003401739.1| - 0.056 12.8 0.2 0.094 12.1 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Pox_MCEL PF03291.16 gi|284163460|ref|YP_003401739.1| - 0.11 11.6 0.0 7.3 5.6 0.0 2.1 2 0 0 2 2 2 0 mRNA capping enzyme FmdA_AmdA PF03069.15 gi|284163460|ref|YP_003401739.1| - 0.11 11.3 0.2 0.84 8.4 0.0 2.3 3 0 0 3 3 3 0 Acetamidase/Formamidase family RHH_1 PF01402.21 gi|284163461|ref|YP_003401740.1| - 0.00041 20.2 1.7 0.0018 18.1 0.1 2.1 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|284163461|ref|YP_003401740.1| - 0.01 16.0 0.0 0.01 16.0 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family TatC PF00902.18 gi|284163462|ref|YP_003401741.1| - 2e-69 233.6 46.1 3.1e-38 131.7 18.6 2.9 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) Saf_2TM PF18303.1 gi|284163462|ref|YP_003401741.1| - 3.3 7.3 7.4 3.1 7.4 2.4 2.8 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain TatC PF00902.18 gi|284163463|ref|YP_003401742.1| - 3.5e-38 131.5 16.9 4.4e-38 131.2 16.9 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Molybdopterin PF00384.22 gi|284163464|ref|YP_003401743.1| - 5.6e-49 167.3 0.0 7.1e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284163464|ref|YP_003401743.1| - 6.5e-15 55.1 0.1 5.4e-14 52.2 0.1 2.4 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|284163464|ref|YP_003401743.1| - 4.6e-06 26.5 1.5 1.1e-05 25.3 1.5 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MFS_1 PF07690.16 gi|284163465|ref|YP_003401744.1| - 2.9e-37 128.4 83.7 2.1e-29 102.6 52.4 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Ferritin PF00210.24 gi|284163466|ref|YP_003401745.1| - 1.2e-32 112.8 2.0 1.4e-32 112.6 2.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain Osmo_CC PF08946.10 gi|284163466|ref|YP_003401745.1| - 0.08 13.2 0.9 0.61 10.4 0.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Ferritin PF00210.24 gi|284163467|ref|YP_003401746.1| - 7.6e-18 64.8 0.3 9e-18 64.6 0.3 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2635 PF10948.8 gi|284163467|ref|YP_003401746.1| - 0.12 12.2 0.4 2.5 7.9 0.1 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2635) Ferritin PF00210.24 gi|284163468|ref|YP_003401747.1| - 3.3e-18 66.0 0.0 5.2e-18 65.3 0.0 1.3 2 0 0 2 2 2 1 Ferritin-like domain NIR_SIR PF01077.22 gi|284163469|ref|YP_003401748.1| - 4e-45 153.2 0.0 5.2e-29 100.8 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|284163469|ref|YP_003401748.1| - 9.6e-38 127.9 0.1 4.7e-18 64.8 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|284163469|ref|YP_003401748.1| - 0.16 12.0 0.4 2.3 8.4 0.0 2.4 2 0 0 2 2 2 0 DGC domain CPBP PF02517.16 gi|284163470|ref|YP_003401749.1| - 5e-13 49.2 5.5 5e-13 49.2 5.5 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease tRNA_Me_trans PF03054.16 gi|284163472|ref|YP_003401751.1| - 6.5e-11 41.6 0.1 2.7e-07 29.7 0.1 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|284163472|ref|YP_003401751.1| - 3.4e-10 40.1 1.3 4.3e-10 39.8 1.1 1.3 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|284163472|ref|YP_003401751.1| - 1.5e-09 37.4 0.0 3.3e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|284163472|ref|YP_003401751.1| - 4.5e-07 29.6 0.0 3.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|284163472|ref|YP_003401751.1| - 0.00046 20.0 0.0 0.0035 17.1 0.0 2.2 3 0 0 3 3 3 1 PP-loop family Arginosuc_synth PF00764.19 gi|284163472|ref|YP_003401751.1| - 0.0015 17.9 0.1 0.0032 16.8 0.1 1.4 2 0 0 2 2 2 1 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|284163472|ref|YP_003401751.1| - 0.014 15.4 0.0 0.041 13.9 0.0 1.6 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family QueH PF02677.14 gi|284163472|ref|YP_003401751.1| - 0.034 14.2 0.1 0.067 13.3 0.1 1.5 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH PG_binding_2 PF08823.11 gi|284163472|ref|YP_003401751.1| - 0.058 13.7 0.1 0.52 10.7 0.0 2.4 2 0 0 2 2 2 0 Putative peptidoglycan binding domain GFO_IDH_MocA PF01408.22 gi|284163473|ref|YP_003401752.1| - 1.5e-22 80.6 0.0 9.3e-22 78.1 0.0 2.2 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284163473|ref|YP_003401752.1| - 0.046 13.7 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain TctA PF01970.16 gi|284163474|ref|YP_003401753.1| - 0.03 13.0 1.2 0.87 8.2 0.1 2.1 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctA family GCS2 PF04107.13 gi|284163475|ref|YP_003401754.1| - 8.4e-14 51.6 0.1 1.2e-13 51.1 0.1 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Cupin_2 PF07883.11 gi|284163476|ref|YP_003401755.1| - 1.7e-11 43.7 0.5 2.6e-11 43.0 0.5 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284163476|ref|YP_003401755.1| - 4.5e-05 23.4 0.1 6.9e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|284163476|ref|YP_003401755.1| - 0.0011 19.1 0.0 0.0022 18.1 0.0 1.6 1 1 0 1 1 1 1 Mif2/CENP-C like Cupin_1 PF00190.22 gi|284163476|ref|YP_003401755.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 1 1 0 1 1 1 0 Cupin COX1 PF00115.20 gi|284163477|ref|YP_003401756.1| - 2e-57 195.0 49.6 2e-57 195.0 49.6 1.6 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|284163477|ref|YP_003401756.1| - 0.019 15.2 1.4 0.019 15.2 1.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2871) HATPase_c PF02518.26 gi|284163478|ref|YP_003401757.1| - 1.7e-17 63.9 0.0 2.9e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284163478|ref|YP_003401757.1| - 6.1e-09 35.9 0.0 1.4e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|284163478|ref|YP_003401757.1| - 3.8e-08 33.1 2.2 6.4e-08 32.3 2.2 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|284163478|ref|YP_003401757.1| - 3.2e-07 30.2 0.0 7.2e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|284163478|ref|YP_003401757.1| - 0.0011 18.9 0.4 0.0033 17.4 0.1 1.9 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|284163478|ref|YP_003401757.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|284163478|ref|YP_003401757.1| - 0.044 13.5 0.1 0.084 12.6 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Gly-zipper_Omp PF13488.6 gi|284163478|ref|YP_003401757.1| - 1.5 8.9 4.3 4.4 7.4 3.0 2.2 1 1 1 2 2 2 0 Glycine zipper DUF1269 PF06897.12 gi|284163478|ref|YP_003401757.1| - 2.3 8.6 6.2 0.64 10.3 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Aminotran_3 PF00202.21 gi|284163480|ref|YP_003401759.1| - 3.5e-67 226.8 0.0 4.7e-67 226.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|284163480|ref|YP_003401759.1| - 0.019 14.1 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II P-II PF00543.22 gi|284163481|ref|YP_003401760.1| - 2.3e-35 121.2 0.0 2.7e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II Ammonium_transp PF00909.21 gi|284163482|ref|YP_003401761.1| - 3.4e-97 325.6 37.0 4e-97 325.4 37.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|284163482|ref|YP_003401761.1| - 2.2e-33 114.9 0.0 4.1e-33 114.0 0.0 1.5 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II PsbY PF06298.11 gi|284163482|ref|YP_003401761.1| - 0.063 13.2 0.2 0.063 13.2 0.2 2.5 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) PsbT PF01405.17 gi|284163482|ref|YP_003401761.1| - 3 7.7 10.5 0.34 10.7 1.7 3.1 2 0 0 2 2 2 0 Photosystem II reaction centre T protein ALAD PF00490.21 gi|284163483|ref|YP_003401762.1| - 2.7e-142 473.6 0.0 3.1e-142 473.4 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase MFS_1 PF07690.16 gi|284163484|ref|YP_003401763.1| - 2.3e-45 155.0 64.1 1.8e-32 112.6 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|284163484|ref|YP_003401763.1| - 1e-07 30.9 23.6 8.7e-07 27.8 7.1 3.2 1 1 2 3 3 3 3 MFS/sugar transport protein Sugar_tr PF00083.24 gi|284163484|ref|YP_003401763.1| - 0.00052 19.0 36.2 0.0043 16.0 16.3 3.6 2 2 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|284163484|ref|YP_003401763.1| - 0.17 10.7 17.6 78 1.9 16.1 3.3 1 1 0 1 1 1 0 MFS_1 like family MFS_4 PF06779.14 gi|284163484|ref|YP_003401763.1| - 0.36 10.1 39.1 0.46 9.7 39.1 1.1 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|284163484|ref|YP_003401763.1| - 2.6 6.2 14.9 0.027 12.8 1.5 3.0 1 1 2 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family TrmB PF01978.19 gi|284163486|ref|YP_003401765.1| - 1.6e-19 69.6 0.2 3.3e-19 68.5 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|284163486|ref|YP_003401765.1| - 0.00028 20.1 0.0 0.00042 19.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.6 gi|284163486|ref|YP_003401765.1| - 0.022 15.2 0.1 0.045 14.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284163486|ref|YP_003401765.1| - 0.098 12.6 0.4 0.22 11.4 0.1 1.8 2 0 0 2 2 2 0 MarR family MCPVI PF02993.14 gi|284163486|ref|YP_003401765.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Minor capsid protein VI Rrf2 PF02082.20 gi|284163486|ref|YP_003401765.1| - 0.12 12.8 0.0 0.28 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|284163486|ref|YP_003401765.1| - 0.16 12.2 0.0 0.38 11.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Fer4_7 PF12838.7 gi|284163487|ref|YP_003401766.1| - 5.8e-13 49.2 20.1 5.9e-07 30.0 7.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284163487|ref|YP_003401766.1| - 2e-12 46.3 14.3 6.7e-07 28.9 5.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284163487|ref|YP_003401766.1| - 4.4e-08 33.2 5.6 8.9e-08 32.2 5.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284163487|ref|YP_003401766.1| - 2.5e-07 30.7 17.9 2.1e-05 24.5 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284163487|ref|YP_003401766.1| - 4e-07 29.8 14.4 5.2e-05 23.1 6.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284163487|ref|YP_003401766.1| - 8.2e-07 29.1 9.9 3.4e-06 27.1 10.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284163487|ref|YP_003401766.1| - 9.1e-07 29.3 0.9 0.022 15.3 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284163487|ref|YP_003401766.1| - 2.9e-06 28.1 4.9 0.00029 21.7 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|284163487|ref|YP_003401766.1| - 3.2e-05 24.3 6.0 0.0014 19.0 6.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284163487|ref|YP_003401766.1| - 0.00014 21.7 11.0 0.0048 16.9 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284163487|ref|YP_003401766.1| - 0.00018 21.6 2.6 0.00018 21.6 2.6 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|284163487|ref|YP_003401766.1| - 0.00063 19.9 0.2 0.00073 19.6 0.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_4 PF12800.7 gi|284163487|ref|YP_003401766.1| - 0.00066 20.0 6.2 0.00066 20.0 1.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|284163487|ref|YP_003401766.1| - 0.00075 20.0 14.9 0.025 15.1 14.9 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|284163487|ref|YP_003401766.1| - 0.0012 19.7 10.2 0.0023 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|284163487|ref|YP_003401766.1| - 1.8 9.3 16.6 25 5.7 16.6 2.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain E3_UbLigase_RBR PF18091.1 gi|284163488|ref|YP_003401767.1| - 0.035 14.2 0.1 0.038 14.1 0.1 1.2 1 0 0 1 1 1 0 E3 Ubiquitin Ligase RBR C-terminal domain PHP PF02811.19 gi|284163489|ref|YP_003401768.1| - 0.00032 21.0 0.0 0.00036 20.9 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|284163489|ref|YP_003401768.1| - 0.0022 17.7 0.0 0.0052 16.5 0.0 1.6 1 0 0 1 1 1 1 PHP-associated DUF2795 PF11387.8 gi|284163490|ref|YP_003401769.1| - 0.05 13.8 0.1 0.48 10.7 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2795) ADH_N PF08240.12 gi|284163491|ref|YP_003401770.1| - 9e-27 93.1 0.7 1.6e-26 92.3 0.7 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284163491|ref|YP_003401770.1| - 4.7e-25 88.1 0.4 9.1e-25 87.1 0.4 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|284163491|ref|YP_003401770.1| - 1.3e-05 24.6 0.7 2.1e-05 23.9 0.7 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|284163491|ref|YP_003401770.1| - 0.00029 21.9 0.1 0.00068 20.7 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_25 PF13649.6 gi|284163491|ref|YP_003401770.1| - 0.0038 17.9 0.4 0.017 15.8 0.1 2.1 2 0 0 2 2 2 1 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|284163491|ref|YP_003401770.1| - 0.0069 15.8 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 gi|284163491|ref|YP_003401770.1| - 0.0075 16.9 0.1 0.021 15.4 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain ELFV_dehydrog PF00208.21 gi|284163491|ref|YP_003401770.1| - 0.017 14.8 0.2 0.028 14.1 0.2 1.4 1 1 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|284163491|ref|YP_003401770.1| - 0.053 13.8 0.5 0.1 12.9 0.5 1.5 1 0 0 1 1 1 0 TrkA-N domain GCV_H PF01597.19 gi|284163491|ref|YP_003401770.1| - 0.094 12.6 0.3 0.27 11.1 0.3 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein Mrr_cat PF04471.12 gi|284163492|ref|YP_003401771.1| - 0.041 13.9 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease CxxCxxCC PF03692.15 gi|284163494|ref|YP_003401773.1| - 1.8e-05 25.4 1.6 0.018 15.7 0.1 2.3 2 0 0 2 2 2 2 Putative zinc- or iron-chelating domain Helicase_C_2 PF13307.6 gi|284163496|ref|YP_003401775.1| - 1.3e-19 71.0 0.0 2.1e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|284163496|ref|YP_003401775.1| - 3.6e-06 26.7 0.0 6.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|284163496|ref|YP_003401775.1| - 0.00012 22.1 0.0 0.034 14.1 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|284163496|ref|YP_003401775.1| - 0.00031 20.6 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|284163496|ref|YP_003401775.1| - 0.00031 21.0 0.0 0.0012 19.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|284163496|ref|YP_003401775.1| - 0.00048 19.9 0.2 0.87 9.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|284163496|ref|YP_003401775.1| - 0.0059 17.0 0.6 0.023 15.1 0.4 2.3 2 1 0 2 2 2 1 AAA ATPase domain OrsD PF12013.8 gi|284163496|ref|YP_003401775.1| - 0.012 16.1 0.1 0.028 14.8 0.1 1.6 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D Mg_chelatase PF01078.21 gi|284163496|ref|YP_003401775.1| - 0.038 13.4 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DXP_redisom_C PF08436.12 gi|284163496|ref|YP_003401775.1| - 0.042 14.0 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AAA_19 PF13245.6 gi|284163496|ref|YP_003401775.1| - 0.044 14.1 0.0 0.11 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|284163496|ref|YP_003401775.1| - 0.055 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein PRO8NT PF08082.11 gi|284163496|ref|YP_003401775.1| - 0.15 12.0 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain DUF2075 PF09848.9 gi|284163496|ref|YP_003401775.1| - 0.16 11.2 0.0 3.9 6.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|284163496|ref|YP_003401775.1| - 0.2 12.1 0.0 2.5 8.5 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Met_10 PF02475.16 gi|284163497|ref|YP_003401776.1| - 9.2e-48 162.6 0.0 1.7e-45 155.3 0.0 2.2 2 0 0 2 2 2 2 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|284163497|ref|YP_003401776.1| - 4e-05 23.3 0.0 6.1e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|284163497|ref|YP_003401776.1| - 0.0018 17.9 0.0 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|284163497|ref|YP_003401776.1| - 0.0022 18.7 0.0 0.0075 16.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|284163497|ref|YP_003401776.1| - 0.01 14.9 0.0 0.015 14.3 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|284163497|ref|YP_003401776.1| - 0.031 13.6 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Trm5_N PF18093.1 gi|284163497|ref|YP_003401776.1| - 0.072 13.0 0.1 0.51 10.3 0.1 2.2 2 0 0 2 2 2 0 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|284163497|ref|YP_003401776.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) YflT PF11181.8 gi|284163497|ref|YP_003401776.1| - 0.11 13.0 0.1 2 9.0 0.0 2.4 2 0 0 2 2 2 0 Heat induced stress protein YflT Cons_hypoth95 PF03602.15 gi|284163497|ref|YP_003401776.1| - 0.15 11.7 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PRMT5 PF05185.16 gi|284163497|ref|YP_003401776.1| - 0.24 11.2 0.0 0.4 10.5 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase NMD3 PF04981.13 gi|284163498|ref|YP_003401777.1| - 1.8e-63 214.2 0.1 2.2e-63 213.9 0.1 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|284163498|ref|YP_003401777.1| - 0.0073 16.6 0.1 0.66 10.3 0.0 3.1 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|284163498|ref|YP_003401777.1| - 0.0084 16.1 5.2 0.11 12.5 2.5 3.0 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|284163498|ref|YP_003401777.1| - 0.025 14.3 2.9 0.66 9.8 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|284163498|ref|YP_003401777.1| - 0.034 13.8 5.3 1.1 9.0 0.8 2.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PknG_rubred PF16919.5 gi|284163498|ref|YP_003401777.1| - 0.2 11.8 5.1 0.46 10.6 0.1 3.2 3 0 0 3 3 3 0 Protein kinase G rubredoxin domain GFA PF04828.14 gi|284163498|ref|YP_003401777.1| - 0.32 11.4 1.6 12 6.3 0.0 3.3 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|284163498|ref|YP_003401777.1| - 0.45 10.2 4.5 2.4 7.8 0.1 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF211 PF02680.14 gi|284163498|ref|YP_003401777.1| - 4.7 7.4 6.1 3.1 8.0 1.5 2.4 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 zf-ribbon_3 PF13248.6 gi|284163498|ref|YP_003401777.1| - 9.6 5.8 10.2 4 7.0 0.2 3.1 4 0 0 4 4 4 0 zinc-ribbon domain PQQ_2 PF13360.6 gi|284163499|ref|YP_003401778.1| - 2.7e-23 82.8 11.9 7.1e-15 55.2 5.6 3.1 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|284163499|ref|YP_003401778.1| - 7.6e-21 74.0 38.0 8.7e-05 22.9 2.4 8.3 8 1 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|284163499|ref|YP_003401778.1| - 3e-07 30.1 15.5 0.028 14.3 0.2 6.9 7 1 1 8 8 8 4 PQQ enzyme repeat Creatininase PF02633.14 gi|284163500|ref|YP_003401779.1| - 2.6e-64 217.0 0.4 2.9e-64 216.8 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Peptidase_M48 PF01435.18 gi|284163501|ref|YP_003401780.1| - 3.4e-43 147.7 0.0 5.5e-43 147.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|284163501|ref|YP_003401780.1| - 2.9e-09 36.6 0.1 1.5e-07 30.9 0.0 2.2 2 0 0 2 2 2 2 BlaR1 peptidase M56 SprT-like PF10263.9 gi|284163501|ref|YP_003401780.1| - 0.032 14.1 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family YdjM PF04307.14 gi|284163502|ref|YP_003401781.1| - 4.2e-11 42.5 10.4 5.3e-11 42.1 10.4 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PsbM PF05151.12 gi|284163502|ref|YP_003401781.1| - 7.4 6.5 8.7 2.6 8.0 0.1 2.9 3 0 0 3 3 3 0 Photosystem II reaction centre M protein (PsbM) HATPase_c PF02518.26 gi|284163504|ref|YP_003401783.1| - 7.2e-19 68.4 0.0 2.3e-18 66.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|284163504|ref|YP_003401783.1| - 9.4e-18 64.8 0.2 3.9e-17 62.8 0.1 2.1 2 0 0 2 2 2 1 GAF domain HisKA PF00512.25 gi|284163504|ref|YP_003401783.1| - 3e-12 46.4 0.8 3e-12 46.4 0.8 3.1 3 2 1 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|284163504|ref|YP_003401783.1| - 1.6e-07 32.0 0.0 6e-07 30.2 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|284163504|ref|YP_003401783.1| - 0.00023 21.5 0.0 0.00054 20.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|284163504|ref|YP_003401783.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|284163504|ref|YP_003401783.1| - 0.036 13.6 14.4 0.074 12.6 8.5 2.7 2 1 1 3 3 3 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|284163504|ref|YP_003401783.1| - 0.041 13.6 0.1 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|284163504|ref|YP_003401783.1| - 0.074 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PQQ_3 PF13570.6 gi|284163505|ref|YP_003401784.1| - 3.7e-50 167.2 42.5 7.5e-11 42.2 1.4 9.0 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.6 gi|284163505|ref|YP_003401784.1| - 2.8e-42 144.9 15.1 7.7e-21 74.8 3.9 2.7 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|284163505|ref|YP_003401784.1| - 4.8e-26 89.4 16.9 6.3e-07 29.0 0.3 8.7 10 0 0 10 10 10 5 PQQ enzyme repeat Rad51 PF08423.11 gi|284163506|ref|YP_003401785.1| - 1e-73 247.8 0.0 7.3e-73 245.0 0.0 1.9 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|284163506|ref|YP_003401785.1| - 5.7e-12 46.1 0.0 1.8e-11 44.5 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|284163506|ref|YP_003401785.1| - 1.8e-08 33.8 0.1 0.00037 20.2 0.0 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|284163506|ref|YP_003401785.1| - 1.6e-07 31.1 0.1 2.4e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|284163506|ref|YP_003401785.1| - 1.7e-07 31.0 0.0 0.0099 15.4 0.0 2.2 1 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH_2 PF12826.7 gi|284163506|ref|YP_003401785.1| - 6.4e-06 26.2 0.0 2.4e-05 24.3 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|284163506|ref|YP_003401785.1| - 7e-05 23.0 0.0 0.00021 21.4 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus ATPase PF06745.13 gi|284163506|ref|YP_003401785.1| - 0.00056 19.3 0.0 0.0025 17.2 0.0 1.9 2 1 0 2 2 2 1 KaiC DNA_pol_lambd_f PF10391.9 gi|284163506|ref|YP_003401785.1| - 0.002 17.9 0.0 0.011 15.5 0.0 2.3 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|284163506|ref|YP_003401785.1| - 0.01 16.1 0.0 0.027 14.7 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) HHH_3 PF12836.7 gi|284163506|ref|YP_003401785.1| - 0.034 14.4 0.0 10 6.5 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|284163506|ref|YP_003401785.1| - 0.044 14.1 0.0 0.19 12.1 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif BAF PF02961.14 gi|284163506|ref|YP_003401785.1| - 0.18 12.3 0.0 0.51 10.8 0.0 1.8 2 0 0 2 2 2 0 Barrier to autointegration factor HalOD1 PF18545.1 gi|284163507|ref|YP_003401786.1| - 1e-21 77.0 0.5 1.4e-21 76.5 0.2 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 Aminotran_3 PF00202.21 gi|284163508|ref|YP_003401787.1| - 2.3e-96 323.0 0.0 2.8e-96 322.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|284163508|ref|YP_003401787.1| - 0.22 10.7 0.0 0.75 8.9 0.0 1.7 2 0 0 2 2 2 0 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|284163509|ref|YP_003401788.1| - 1.2e-59 201.9 0.0 1.5e-59 201.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|284163509|ref|YP_003401788.1| - 0.0013 18.1 0.0 0.0026 17.1 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|284163509|ref|YP_003401788.1| - 0.015 14.2 0.0 0.032 13.2 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-V DUF2383 PF09537.10 gi|284163509|ref|YP_003401788.1| - 0.025 14.9 0.0 0.071 13.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) IucA_IucC PF04183.12 gi|284163510|ref|YP_003401789.1| - 2.7e-61 207.2 0.0 3.8e-61 206.7 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|284163510|ref|YP_003401789.1| - 4.9e-32 111.6 0.0 8.4e-32 110.8 0.0 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Acetyltransf_8 PF13523.6 gi|284163511|ref|YP_003401790.1| - 2.3e-48 163.6 0.2 3.2e-48 163.1 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284163511|ref|YP_003401790.1| - 3.1e-10 40.9 0.0 8.5e-10 39.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284163511|ref|YP_003401790.1| - 0.039 14.2 0.0 0.068 13.4 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family K_oxygenase PF13434.6 gi|284163512|ref|YP_003401791.1| - 7.1e-109 364.1 0.0 8.7e-109 363.8 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 gi|284163512|ref|YP_003401791.1| - 6.5e-05 22.3 0.0 0.00028 20.2 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|284163512|ref|YP_003401791.1| - 0.0011 19.0 0.4 0.096 12.7 0.2 3.1 3 1 0 3 3 3 1 FAD-NAD(P)-binding IucA_IucC PF04183.12 gi|284163513|ref|YP_003401792.1| - 1.1e-72 244.4 0.0 1.6e-72 244.0 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|284163513|ref|YP_003401792.1| - 3e-41 141.6 0.7 5.8e-41 140.6 0.7 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter NifU_N PF01592.16 gi|284163514|ref|YP_003401793.1| - 7.3e-29 100.5 0.0 8.9e-29 100.2 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.15 gi|284163514|ref|YP_003401793.1| - 0.071 13.0 0.0 0.098 12.5 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain Dicistro_VP4 PF11492.8 gi|284163515|ref|YP_003401794.1| - 0.11 12.5 0.6 0.14 12.1 0.6 1.2 1 0 0 1 1 1 0 Cricket paralysis virus, VP4 HD PF01966.22 gi|284163516|ref|YP_003401795.1| - 2.7e-11 43.8 2.5 4.9e-11 42.9 2.5 1.4 1 0 0 1 1 1 1 HD domain Acetyltransf_1 PF00583.25 gi|284163517|ref|YP_003401796.1| - 2.3e-09 37.5 0.0 3e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284163517|ref|YP_003401796.1| - 2.3e-07 31.1 0.1 3e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284163517|ref|YP_003401796.1| - 5.8e-07 29.5 0.0 7.2e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284163517|ref|YP_003401796.1| - 0.0049 17.0 0.0 0.0061 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284163517|ref|YP_003401796.1| - 0.0079 16.3 0.2 0.031 14.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284163517|ref|YP_003401796.1| - 0.02 14.8 0.1 0.031 14.3 0.1 1.2 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.6 gi|284163517|ref|YP_003401796.1| - 0.033 14.3 0.1 0.048 13.8 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase RibD_C PF01872.17 gi|284163518|ref|YP_003401797.1| - 3e-23 82.7 0.1 7.2e-22 78.2 0.1 2.0 1 1 0 1 1 1 1 RibD C-terminal domain DHFR_1 PF00186.19 gi|284163518|ref|YP_003401797.1| - 6e-06 26.1 0.0 7.6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase Aminotran_5 PF00266.19 gi|284163519|ref|YP_003401798.1| - 9.1e-151 502.0 0.0 1e-150 501.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|284163519|ref|YP_003401798.1| - 7.9e-10 38.6 0.2 1.6e-09 37.6 0.2 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|284163519|ref|YP_003401798.1| - 4.1e-06 26.3 0.0 5.1e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|284163519|ref|YP_003401798.1| - 0.0018 16.9 0.0 0.0093 14.5 0.0 1.9 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|284163519|ref|YP_003401798.1| - 0.005 15.9 0.0 0.013 14.6 0.0 1.6 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.19 gi|284163519|ref|YP_003401798.1| - 0.053 12.2 0.0 0.13 10.9 0.1 1.6 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase conserved domain DUF424 PF04242.13 gi|284163520|ref|YP_003401799.1| - 1e-29 102.6 0.2 1.1e-29 102.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.28 gi|284163521|ref|YP_003401800.1| - 6.6e-20 70.0 8.0 0.00016 21.4 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|284163521|ref|YP_003401800.1| - 2.7e-16 58.3 14.0 0.014 15.5 0.3 5.3 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|284163521|ref|YP_003401800.1| - 2.9e-14 53.1 19.5 3.5e-08 33.6 3.3 4.1 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|284163521|ref|YP_003401800.1| - 1.6e-13 49.7 6.9 0.006 16.7 0.4 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|284163521|ref|YP_003401800.1| - 1.4e-11 44.9 12.9 8.2e-05 23.2 1.4 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|284163521|ref|YP_003401800.1| - 7.5e-09 35.4 0.5 0.023 15.1 0.0 3.9 4 0 0 4 4 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|284163521|ref|YP_003401800.1| - 1.5e-07 30.9 12.0 0.028 14.4 0.1 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.6 gi|284163521|ref|YP_003401800.1| - 4.3e-07 29.6 23.6 0.0017 18.1 3.2 5.2 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|284163521|ref|YP_003401800.1| - 6.2e-07 29.5 10.8 0.016 15.3 0.2 4.1 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|284163521|ref|YP_003401800.1| - 1.6e-06 28.5 16.9 0.013 16.3 0.5 5.0 1 1 4 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|284163521|ref|YP_003401800.1| - 0.0003 21.0 2.6 0.03 14.5 0.1 2.5 1 1 1 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|284163521|ref|YP_003401800.1| - 0.00038 20.9 11.4 0.33 11.5 0.0 3.7 1 1 3 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|284163521|ref|YP_003401800.1| - 0.001 18.1 0.5 0.0021 17.0 0.2 1.6 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_11 PF13414.6 gi|284163521|ref|YP_003401800.1| - 0.0021 17.7 9.4 0.67 9.7 0.0 4.4 3 1 1 4 4 4 2 TPR repeat TPR_4 PF07721.14 gi|284163521|ref|YP_003401800.1| - 0.0096 16.5 15.5 0.17 12.6 0.5 4.6 5 0 0 5 5 4 2 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|284163521|ref|YP_003401800.1| - 0.011 15.8 10.2 0.11 12.6 1.5 4.0 1 1 3 4 4 4 0 Anaphase-promoting complex subunit 5 TPR_6 PF13174.6 gi|284163521|ref|YP_003401800.1| - 0.016 15.8 4.2 64 4.5 0.0 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat SPOB_a PF14689.6 gi|284163521|ref|YP_003401800.1| - 0.1 12.3 2.5 8.9 6.1 0.0 2.6 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acetyltransf_11 PF13720.6 gi|284163521|ref|YP_003401800.1| - 0.1 13.1 0.3 0.28 11.7 0.3 1.7 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TPR_20 PF14561.6 gi|284163521|ref|YP_003401800.1| - 0.57 10.6 4.7 3 8.2 1.0 2.6 1 1 1 2 2 2 0 Tetratricopeptide repeat ABC_tran PF00005.27 gi|284163522|ref|YP_003401801.1| - 2.2e-27 96.2 0.0 3.7e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163522|ref|YP_003401801.1| - 3.2e-13 50.2 0.1 4.8e-08 33.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284163522|ref|YP_003401801.1| - 2.5e-07 31.3 0.0 5.6e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|284163522|ref|YP_003401801.1| - 0.00018 21.0 0.0 0.092 12.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284163522|ref|YP_003401801.1| - 0.0024 17.6 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284163522|ref|YP_003401801.1| - 0.0032 18.0 0.0 0.0053 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284163522|ref|YP_003401801.1| - 0.0036 17.2 0.0 0.0078 16.1 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|284163522|ref|YP_003401801.1| - 0.027 14.2 0.0 0.1 12.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|284163522|ref|YP_003401801.1| - 0.03 13.9 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|284163522|ref|YP_003401801.1| - 0.05 14.0 0.0 0.08 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|284163522|ref|YP_003401801.1| - 0.083 13.0 0.1 0.18 11.9 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|284163522|ref|YP_003401801.1| - 0.14 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|284163523|ref|YP_003401802.1| - 2.2e-31 109.2 9.9 3e-31 108.8 9.9 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284163523|ref|YP_003401802.1| - 5.3e-08 32.4 7.3 6.7e-08 32.0 7.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284163523|ref|YP_003401802.1| - 5.3e-06 26.5 2.8 5.3e-06 26.5 2.8 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284163523|ref|YP_003401802.1| - 0.00016 21.3 1.6 0.00025 20.7 1.6 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|284163523|ref|YP_003401802.1| - 0.0028 17.1 10.0 0.0042 16.5 10.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_2 PF12679.7 gi|284163524|ref|YP_003401803.1| - 5.8e-30 104.6 13.2 4e-28 98.5 13.2 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284163524|ref|YP_003401803.1| - 4.2e-05 23.2 3.2 0.00013 21.6 3.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284163524|ref|YP_003401803.1| - 9.3e-05 21.7 4.3 9.3e-05 21.7 4.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284163524|ref|YP_003401803.1| - 0.0045 17.0 2.0 0.008 16.2 1.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Borrelia_P13 PF05628.12 gi|284163524|ref|YP_003401803.1| - 0.062 13.3 0.2 0.13 12.2 0.2 1.6 1 0 0 1 1 1 0 Borrelia membrane protein P13 TAT_signal PF10518.9 gi|284163525|ref|YP_003401804.1| - 0.033 14.0 5.2 0.059 13.2 5.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence LigT_PEase PF02834.16 gi|284163526|ref|YP_003401805.1| - 2.2e-25 88.7 0.0 1.6e-12 47.5 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|284163526|ref|YP_003401805.1| - 5.6e-19 68.5 0.1 6.2e-19 68.4 0.1 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|284163526|ref|YP_003401805.1| - 5e-08 33.1 0.0 5.5e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|284163526|ref|YP_003401805.1| - 0.013 15.0 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein Ribosomal_L39 PF00832.20 gi|284163528|ref|YP_003401807.1| - 2.1e-20 72.0 8.3 2.5e-20 71.8 8.3 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|284163529|ref|YP_003401808.1| - 1.6e-08 34.6 0.1 2.1e-08 34.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|284163530|ref|YP_003401809.1| - 3.4e-74 248.5 0.2 4e-74 248.3 0.2 1.1 1 0 0 1 1 1 1 eIF-6 family ASCH PF04266.14 gi|284163531|ref|YP_003401810.1| - 0.0034 18.0 0.1 0.0053 17.3 0.0 1.3 1 1 0 1 1 1 1 ASCH domain Prefoldin PF02996.17 gi|284163533|ref|YP_003401812.1| - 1.1e-23 83.4 16.2 7.1e-23 80.8 16.2 2.0 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|284163533|ref|YP_003401812.1| - 4.6e-08 33.0 28.2 0.00014 21.8 8.6 3.0 1 1 1 2 2 2 2 Prefoldin subunit ZapB PF06005.12 gi|284163533|ref|YP_003401812.1| - 1.8e-06 28.3 25.9 0.003 18.0 14.6 2.2 2 0 0 2 2 2 2 Cell division protein ZapB Spc7 PF08317.11 gi|284163533|ref|YP_003401812.1| - 0.0003 19.8 23.8 0.023 13.6 7.4 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein NPV_P10 PF05531.12 gi|284163533|ref|YP_003401812.1| - 0.00034 21.0 20.7 0.0067 16.9 6.4 2.5 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Ax_dynein_light PF10211.9 gi|284163533|ref|YP_003401812.1| - 0.00063 19.8 17.2 0.013 15.4 5.0 2.2 2 0 0 2 2 2 2 Axonemal dynein light chain CENP-F_leu_zip PF10473.9 gi|284163533|ref|YP_003401812.1| - 0.00081 19.4 22.6 0.049 13.7 8.3 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Phage_GP20 PF06810.11 gi|284163533|ref|YP_003401812.1| - 0.0011 18.7 23.3 0.017 15.0 9.4 2.2 2 0 0 2 2 2 2 Phage minor structural protein GP20 DUF4988 PF16378.5 gi|284163533|ref|YP_003401812.1| - 0.0019 17.9 5.5 0.3 10.7 1.0 2.3 2 0 0 2 2 2 2 Domain of unknown function GPS2_interact PF15784.5 gi|284163533|ref|YP_003401812.1| - 0.0019 18.6 6.4 0.0019 18.6 6.4 2.1 2 0 0 2 2 2 1 G-protein pathway suppressor 2-interacting domain FliD_C PF07195.12 gi|284163533|ref|YP_003401812.1| - 0.0024 17.3 2.9 0.0024 17.3 2.9 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus XhlA PF10779.9 gi|284163533|ref|YP_003401812.1| - 0.0031 17.7 15.5 0.18 12.0 2.3 2.5 2 0 0 2 2 2 2 Haemolysin XhlA SlyX PF04102.12 gi|284163533|ref|YP_003401812.1| - 0.0031 18.1 34.1 0.038 14.6 14.7 3.4 3 1 0 3 3 3 1 SlyX GAS PF13851.6 gi|284163533|ref|YP_003401812.1| - 0.0034 16.8 18.7 0.097 12.0 5.6 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|284163533|ref|YP_003401812.1| - 0.005 17.0 16.6 0.12 12.6 1.9 2.2 1 1 0 2 2 2 2 Fibrinogen alpha/beta chain family APG6_N PF17675.1 gi|284163533|ref|YP_003401812.1| - 0.0053 17.3 31.6 0.06 13.9 12.7 2.1 2 0 0 2 2 2 1 Apg6 coiled-coil region LRRFIP PF09738.9 gi|284163533|ref|YP_003401812.1| - 0.0056 16.2 15.4 0.17 11.3 3.2 2.1 2 0 0 2 2 2 2 LRRFIP family DUF4795 PF16043.5 gi|284163533|ref|YP_003401812.1| - 0.0056 16.3 16.0 0.16 11.6 3.9 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4795) Tektin PF03148.14 gi|284163533|ref|YP_003401812.1| - 0.0059 15.4 15.9 0.023 13.4 3.4 2.2 2 0 0 2 2 2 1 Tektin family Tropomyosin_1 PF12718.7 gi|284163533|ref|YP_003401812.1| - 0.0073 16.5 25.9 0.15 12.2 9.8 2.1 2 0 0 2 2 2 2 Tropomyosin like DUF4337 PF14235.6 gi|284163533|ref|YP_003401812.1| - 0.0076 16.4 6.2 0.0076 16.4 6.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) FlaC_arch PF05377.11 gi|284163533|ref|YP_003401812.1| - 0.0095 16.3 18.1 0.39 11.1 2.8 3.5 3 1 1 4 4 3 3 Flagella accessory protein C (FlaC) MscS_porin PF12795.7 gi|284163533|ref|YP_003401812.1| - 0.011 15.3 30.6 0.02 14.4 10.3 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Not3 PF04065.15 gi|284163533|ref|YP_003401812.1| - 0.017 14.6 16.4 0.085 12.3 4.2 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF5082 PF16888.5 gi|284163533|ref|YP_003401812.1| - 0.017 15.4 23.9 0.11 12.8 7.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) DUF4201 PF13870.6 gi|284163533|ref|YP_003401812.1| - 0.017 14.9 16.0 0.2 11.4 2.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) COG5 PF10392.9 gi|284163533|ref|YP_003401812.1| - 0.022 14.9 6.8 0.86 9.8 0.5 2.2 2 0 0 2 2 2 0 Golgi transport complex subunit 5 GCN5L1 PF06320.13 gi|284163533|ref|YP_003401812.1| - 0.026 14.7 4.4 0.026 14.7 4.4 2.3 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) FapA PF03961.13 gi|284163533|ref|YP_003401812.1| - 0.027 13.1 15.5 0.11 11.1 4.4 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A Syntaxin-6_N PF09177.11 gi|284163533|ref|YP_003401812.1| - 0.027 15.0 1.8 0.027 15.0 1.8 2.7 2 1 0 2 2 2 0 Syntaxin 6, N-terminal ADIP PF11559.8 gi|284163533|ref|YP_003401812.1| - 0.028 14.5 20.5 0.038 14.1 5.4 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding AAA_13 PF13166.6 gi|284163533|ref|YP_003401812.1| - 0.029 13.0 19.5 0.23 10.1 19.5 1.9 1 1 0 1 1 1 0 AAA domain DUF2730 PF10805.8 gi|284163533|ref|YP_003401812.1| - 0.032 14.3 10.8 0.59 10.2 2.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) TPR_MLP1_2 PF07926.12 gi|284163533|ref|YP_003401812.1| - 0.033 14.2 24.7 0.1 12.6 8.8 2.4 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3450 PF11932.8 gi|284163533|ref|YP_003401812.1| - 0.038 13.3 25.5 0.028 13.7 8.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) TSC22 PF01166.18 gi|284163533|ref|YP_003401812.1| - 0.038 14.3 7.9 0.038 14.3 7.9 3.5 2 2 1 3 3 1 0 TSC-22/dip/bun family Muted PF14942.6 gi|284163533|ref|YP_003401812.1| - 0.039 14.3 17.9 0.69 10.3 5.4 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Nmad5 PF18757.1 gi|284163533|ref|YP_003401812.1| - 0.046 13.9 3.5 0.072 13.3 3.1 1.5 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 DUF3287 PF11690.8 gi|284163533|ref|YP_003401812.1| - 0.048 13.4 0.9 3.7 7.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) COG6 PF06419.11 gi|284163533|ref|YP_003401812.1| - 0.048 11.9 15.4 0.076 11.2 3.8 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 DUF4618 PF15397.6 gi|284163533|ref|YP_003401812.1| - 0.05 13.0 18.4 0.24 10.8 4.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Sec34 PF04136.15 gi|284163533|ref|YP_003401812.1| - 0.053 13.4 16.8 0.3 11.0 4.8 2.1 2 0 0 2 2 2 0 Sec34-like family ORF6C PF10552.9 gi|284163533|ref|YP_003401812.1| - 0.055 13.5 12.7 0.17 12.0 3.6 2.3 2 0 0 2 2 2 0 ORF6C domain Spc24 PF08286.11 gi|284163533|ref|YP_003401812.1| - 0.057 13.7 24.3 0.4 11.0 5.4 2.4 1 1 0 2 2 2 0 Spc24 subunit of Ndc80 Uds1 PF15456.6 gi|284163533|ref|YP_003401812.1| - 0.067 13.4 12.5 0.2 11.9 12.5 1.9 1 1 0 1 1 1 0 Up-regulated During Septation SKA2 PF16740.5 gi|284163533|ref|YP_003401812.1| - 0.069 12.9 19.8 0.37 10.6 3.7 2.4 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Fmp27_WPPW PF10359.9 gi|284163533|ref|YP_003401812.1| - 0.074 11.9 13.4 0.077 11.8 3.0 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain BLOC1_2 PF10046.9 gi|284163533|ref|YP_003401812.1| - 0.077 13.3 25.4 0.47 10.8 7.3 3.1 2 2 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FH2 PF02181.23 gi|284163533|ref|YP_003401812.1| - 0.082 12.0 10.4 0.14 11.3 2.3 2.2 2 0 0 2 2 2 0 Formin Homology 2 Domain Laminin_II PF06009.12 gi|284163533|ref|YP_003401812.1| - 0.084 12.9 13.8 1 9.3 3.7 2.2 2 0 0 2 2 2 0 Laminin Domain II SHE3 PF17078.5 gi|284163533|ref|YP_003401812.1| - 0.09 12.5 14.5 0.11 12.2 2.9 2.1 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 Atg14 PF10186.9 gi|284163533|ref|YP_003401812.1| - 0.095 11.8 17.4 0.044 12.9 5.1 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|284163533|ref|YP_003401812.1| - 0.095 10.2 17.9 0.12 9.9 17.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF724 PF05266.14 gi|284163533|ref|YP_003401812.1| - 0.11 12.3 20.1 0.56 10.0 3.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF724) YabA PF06156.13 gi|284163533|ref|YP_003401812.1| - 0.11 13.1 19.5 0.76 10.4 8.7 2.2 2 1 0 2 2 2 0 Initiation control protein YabA PRKG1_interact PF15898.5 gi|284163533|ref|YP_003401812.1| - 0.12 13.3 18.1 1.6 9.6 5.8 2.3 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain ERM PF00769.19 gi|284163533|ref|YP_003401812.1| - 0.15 11.9 26.0 0.033 14.0 9.4 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Lebercilin PF15619.6 gi|284163533|ref|YP_003401812.1| - 0.16 11.7 20.2 0.29 10.8 4.9 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Cep57_MT_bd PF06657.13 gi|284163533|ref|YP_003401812.1| - 0.16 12.5 19.8 1.4 9.5 7.8 2.6 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Seryl_tRNA_N PF02403.22 gi|284163533|ref|YP_003401812.1| - 0.17 12.2 16.3 0.62 10.3 4.5 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain PspA_IM30 PF04012.12 gi|284163533|ref|YP_003401812.1| - 0.17 11.4 21.9 0.1 12.1 7.3 2.2 2 0 0 2 2 2 0 PspA/IM30 family zf-CpG_bind_C PF12269.8 gi|284163533|ref|YP_003401812.1| - 0.18 11.6 10.7 1.1 9.0 0.8 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain Lzipper-MIP1 PF14389.6 gi|284163533|ref|YP_003401812.1| - 0.2 12.0 16.3 0.051 13.9 4.3 2.4 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DUF1664 PF07889.12 gi|284163533|ref|YP_003401812.1| - 0.25 11.4 17.9 1.2 9.2 6.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) MtrB PF05440.12 gi|284163533|ref|YP_003401812.1| - 0.28 11.6 2.6 18 5.9 0.3 2.4 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B LPP PF04728.13 gi|284163533|ref|YP_003401812.1| - 0.28 11.6 19.0 0.89 10.0 3.4 2.8 2 1 1 3 3 3 0 Lipoprotein leucine-zipper Allexi_40kDa PF05549.11 gi|284163533|ref|YP_003401812.1| - 0.28 10.6 10.2 0.52 9.8 1.7 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein Cytochrom_C_2 PF01322.20 gi|284163533|ref|YP_003401812.1| - 0.28 12.1 7.0 0.36 11.7 1.3 2.2 2 0 0 2 2 2 0 Cytochrome C' T3SSipB PF16535.5 gi|284163533|ref|YP_003401812.1| - 0.32 11.4 19.2 0.66 10.4 7.1 2.1 2 0 0 2 2 2 0 Type III cell invasion protein SipB DUF4140 PF13600.6 gi|284163533|ref|YP_003401812.1| - 0.33 11.4 23.5 5.4 7.5 5.6 3.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Cob_adeno_trans PF01923.18 gi|284163533|ref|YP_003401812.1| - 0.34 11.0 12.0 0.23 11.6 3.5 2.4 1 1 1 2 2 2 0 Cobalamin adenosyltransferase HlyD_2 PF12700.7 gi|284163533|ref|YP_003401812.1| - 0.35 9.6 15.4 0.35 9.5 4.5 2.1 2 0 0 2 2 2 0 HlyD family secretion protein kleA_kleC PF17383.2 gi|284163533|ref|YP_003401812.1| - 0.35 11.2 8.6 0.059 13.7 2.4 2.3 2 0 0 2 2 2 0 Uncharacterized KorC regulated protein A DUF932 PF06067.11 gi|284163533|ref|YP_003401812.1| - 0.37 10.5 9.7 2 8.1 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF932) bZIP_1 PF00170.21 gi|284163533|ref|YP_003401812.1| - 0.38 10.9 15.5 0.41 10.8 1.0 3.1 2 1 1 3 3 3 0 bZIP transcription factor V_ATPase_I PF01496.19 gi|284163533|ref|YP_003401812.1| - 0.39 8.6 16.6 0.15 10.0 4.1 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family Jnk-SapK_ap_N PF09744.9 gi|284163533|ref|YP_003401812.1| - 0.4 10.9 22.8 0.26 11.5 7.8 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 OmpH PF03938.14 gi|284163533|ref|YP_003401812.1| - 0.4 11.0 29.7 0.15 12.4 13.3 2.2 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) TMF_DNA_bd PF12329.8 gi|284163533|ref|YP_003401812.1| - 0.44 10.6 24.9 0.22 11.5 8.6 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding EzrA PF06160.12 gi|284163533|ref|YP_003401812.1| - 0.44 8.7 21.2 0.78 7.8 7.0 2.0 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA EMP24_GP25L PF01105.24 gi|284163533|ref|YP_003401812.1| - 0.46 10.4 13.8 0.15 12.0 1.6 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF4407 PF14362.6 gi|284163533|ref|YP_003401812.1| - 0.47 9.8 20.9 0.41 9.9 9.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DHR10 PF18595.1 gi|284163533|ref|YP_003401812.1| - 0.49 10.5 31.1 1.2 9.3 8.7 2.7 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain HAUS-augmin3 PF14932.6 gi|284163533|ref|YP_003401812.1| - 0.51 9.9 24.3 0.76 9.3 8.7 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 SKA1 PF07160.12 gi|284163533|ref|YP_003401812.1| - 0.53 10.1 18.2 0.7 9.7 5.3 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 FliJ PF02050.16 gi|284163533|ref|YP_003401812.1| - 0.58 10.4 28.0 0.15 12.3 8.8 2.3 1 1 1 2 2 2 0 Flagellar FliJ protein Occludin_ELL PF07303.13 gi|284163533|ref|YP_003401812.1| - 0.59 10.9 13.8 3.9 8.2 1.6 2.5 2 1 1 3 3 2 0 Occludin homology domain DUF4446 PF14584.6 gi|284163533|ref|YP_003401812.1| - 0.59 10.1 13.3 1.7 8.7 4.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) PHM7_cyt PF14703.6 gi|284163533|ref|YP_003401812.1| - 0.64 10.2 9.2 0.69 10.1 1.6 2.3 2 0 0 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter COG2 PF06148.11 gi|284163533|ref|YP_003401812.1| - 0.67 10.1 16.5 0.44 10.6 2.7 2.3 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 JIP_LZII PF16471.5 gi|284163533|ref|YP_003401812.1| - 0.73 10.1 20.0 0.31 11.2 6.6 2.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II LMBR1 PF04791.16 gi|284163533|ref|YP_003401812.1| - 0.74 8.7 10.4 2.6 6.9 10.4 1.6 1 1 0 1 1 1 0 LMBR1-like membrane protein Sipho_Gp157 PF05565.11 gi|284163533|ref|YP_003401812.1| - 0.76 9.8 18.8 0.19 11.8 8.4 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 Paralemmin PF03285.15 gi|284163533|ref|YP_003401812.1| - 0.79 9.2 17.5 1.7 8.1 2.9 2.1 2 0 0 2 2 2 0 Paralemmin DASH_Spc19 PF08287.11 gi|284163533|ref|YP_003401812.1| - 0.86 9.5 18.5 1.8 8.5 8.0 2.3 1 1 1 2 2 2 0 Spc19 TBK1_CCD1 PF18394.1 gi|284163533|ref|YP_003401812.1| - 0.89 9.1 9.4 0.44 10.1 1.3 2.1 2 0 0 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 CorA PF01544.18 gi|284163533|ref|YP_003401812.1| - 0.89 8.8 16.6 2.7 7.2 16.6 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DASH_Dam1 PF08653.10 gi|284163533|ref|YP_003401812.1| - 0.93 9.3 10.1 4.3 7.2 0.4 3.4 2 1 1 3 3 3 0 DASH complex subunit Dam1 YlqD PF11068.8 gi|284163533|ref|YP_003401812.1| - 0.95 9.8 26.2 3.4 8.0 11.1 2.4 2 0 0 2 2 2 0 YlqD protein Hemerythrin PF01814.23 gi|284163533|ref|YP_003401812.1| - 0.98 10.0 8.9 6.3 7.4 0.3 2.5 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain L31 PF09784.9 gi|284163533|ref|YP_003401812.1| - 1 9.8 9.7 2.8 8.4 0.6 2.6 2 1 1 3 3 2 0 Mitochondrial ribosomal protein L31 Fungal_trans_2 PF11951.8 gi|284163533|ref|YP_003401812.1| - 1 8.1 4.9 3 6.5 0.2 2.0 2 0 0 2 2 2 0 Fungal specific transcription factor domain CASP_C PF08172.12 gi|284163533|ref|YP_003401812.1| - 1 8.6 17.0 2.4 7.4 16.8 1.7 1 1 0 1 1 1 0 CASP C terminal DivIC PF04977.15 gi|284163533|ref|YP_003401812.1| - 1.1 9.0 27.2 1.7 8.5 7.5 3.3 2 1 1 3 3 3 0 Septum formation initiator Golgin_A5 PF09787.9 gi|284163533|ref|YP_003401812.1| - 1.1 8.6 27.1 0.22 11.0 10.3 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 AAA_lid_9 PF17871.1 gi|284163533|ref|YP_003401812.1| - 1.2 9.1 15.8 0.67 9.9 4.9 2.4 2 0 0 2 2 2 0 AAA lid domain DUF948 PF06103.11 gi|284163533|ref|YP_003401812.1| - 1.2 9.5 14.5 2.3 8.5 3.1 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) MtrG PF04210.13 gi|284163533|ref|YP_003401812.1| - 1.2 9.1 5.8 8.6 6.3 0.2 2.6 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G GCP_N_terminal PF17681.1 gi|284163533|ref|YP_003401812.1| - 1.4 8.5 6.5 0.85 9.2 0.4 2.1 1 1 0 2 2 2 0 Gamma tubulin complex component N-terminal DUF4200 PF13863.6 gi|284163533|ref|YP_003401812.1| - 1.4 9.4 21.1 2.5 8.5 7.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Synaptobrevin PF00957.21 gi|284163533|ref|YP_003401812.1| - 1.4 8.8 18.0 0.23 11.3 5.9 3.1 2 1 1 3 3 3 0 Synaptobrevin TMF_TATA_bd PF12325.8 gi|284163533|ref|YP_003401812.1| - 1.4 9.2 27.0 0.89 9.8 6.9 2.4 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding MCU PF04678.13 gi|284163533|ref|YP_003401812.1| - 1.4 9.0 14.3 0.38 10.8 4.2 2.1 1 1 1 2 2 2 0 Mitochondrial calcium uniporter Spectrin PF00435.21 gi|284163533|ref|YP_003401812.1| - 1.5 9.4 22.8 3.5 8.2 6.3 2.3 2 0 0 2 2 2 0 Spectrin repeat DUF3552 PF12072.8 gi|284163533|ref|YP_003401812.1| - 1.5 8.2 24.5 0.21 11.0 9.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) TMPIT PF07851.13 gi|284163533|ref|YP_003401812.1| - 1.7 7.9 15.6 0.59 9.3 1.1 2.0 1 1 1 2 2 2 0 TMPIT-like protein HalX PF08663.10 gi|284163533|ref|YP_003401812.1| - 1.9 8.9 27.4 0.69 10.3 4.3 3.7 2 2 1 3 3 2 0 HalX domain DUF812 PF05667.11 gi|284163533|ref|YP_003401812.1| - 2 7.2 30.4 1.4 7.7 8.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF1465 PF07323.12 gi|284163533|ref|YP_003401812.1| - 2 8.2 11.4 1.2 8.9 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) CLZ PF16526.5 gi|284163533|ref|YP_003401812.1| - 2.1 8.8 20.8 1.3 9.5 8.5 2.6 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels GrpE PF01025.19 gi|284163533|ref|YP_003401812.1| - 2.1 8.0 20.6 1.2 8.8 8.5 2.2 2 0 0 2 2 2 0 GrpE RPW8 PF05659.11 gi|284163533|ref|YP_003401812.1| - 2.2 8.0 11.0 4.1 7.1 2.5 2.6 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 CCDC53 PF10152.9 gi|284163533|ref|YP_003401812.1| - 2.3 8.6 14.5 3.5 8.0 14.5 1.3 1 1 0 1 1 1 0 Subunit CCDC53 of WASH complex Csm1_N PF18504.1 gi|284163533|ref|YP_003401812.1| - 2.3 8.6 25.9 2 8.8 9.1 3.0 3 1 0 3 3 2 0 Csm1 N-terminal domain HAUS6_N PF14661.6 gi|284163533|ref|YP_003401812.1| - 2.4 7.7 16.8 1.3 8.6 4.9 2.1 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus RecG_N PF17190.4 gi|284163533|ref|YP_003401812.1| - 2.4 8.9 9.4 1.3 9.8 0.3 2.5 2 1 0 2 2 2 0 RecG N-terminal helical domain Plk4_PB2 PF18409.1 gi|284163533|ref|YP_003401812.1| - 2.4 8.9 6.3 15 6.4 0.6 2.2 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 FUSC PF04632.12 gi|284163533|ref|YP_003401812.1| - 2.5 6.5 7.9 6.4 5.2 7.9 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family Hemagglutinin PF00509.18 gi|284163533|ref|YP_003401812.1| - 2.5 6.4 8.0 2.2 6.6 0.4 2.0 2 0 0 2 2 2 0 Haemagglutinin GTP-bdg_M PF16360.5 gi|284163533|ref|YP_003401812.1| - 2.6 8.7 14.6 0.26 11.9 0.8 3.0 2 1 1 3 3 3 0 GTP-binding GTPase Middle Region HemX PF04375.14 gi|284163533|ref|YP_003401812.1| - 2.7 7.2 29.8 1.9 7.7 10.5 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF5446 PF17522.2 gi|284163533|ref|YP_003401812.1| - 2.9 8.1 20.2 6.5 7.0 5.2 2.6 2 1 0 2 2 2 0 Family of unknown function (DUF5446) TMCO5 PF14992.6 gi|284163533|ref|YP_003401812.1| - 3 7.3 16.4 2.3 7.8 5.6 2.0 2 0 0 2 2 2 0 TMCO5 family WXG100 PF06013.12 gi|284163533|ref|YP_003401812.1| - 3.4 7.9 21.4 3.4 8.0 3.8 2.8 2 1 0 2 2 2 0 Proteins of 100 residues with WXG P4Ha_N PF08336.11 gi|284163533|ref|YP_003401812.1| - 3.5 7.7 12.8 4 7.5 3.6 2.3 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Dynamitin PF04912.14 gi|284163533|ref|YP_003401812.1| - 3.5 6.9 24.8 4.4 6.5 8.3 2.0 1 1 1 2 2 2 0 Dynamitin CENP-H PF05837.12 gi|284163533|ref|YP_003401812.1| - 3.7 8.0 23.6 3.8 8.0 10.8 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) T2SSM PF04612.12 gi|284163533|ref|YP_003401812.1| - 3.7 7.6 16.9 5.5 7.0 3.0 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M THOC7 PF05615.13 gi|284163533|ref|YP_003401812.1| - 3.8 7.8 23.9 2.2 8.6 9.0 2.5 2 2 0 2 2 2 0 Tho complex subunit 7 HAUS5 PF14817.6 gi|284163533|ref|YP_003401812.1| - 3.9 6.1 18.6 0.95 8.1 4.2 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 5 TraF_2 PF13729.6 gi|284163533|ref|YP_003401812.1| - 3.9 6.8 13.8 5.1 6.4 1.3 2.1 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Nsp1_C PF05064.13 gi|284163533|ref|YP_003401812.1| - 4.1 7.2 26.6 5.4 6.8 9.4 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region Cauli_AT PF03233.13 gi|284163533|ref|YP_003401812.1| - 4.1 7.3 9.7 7.5 6.4 1.7 2.2 2 0 0 2 2 2 0 Aphid transmission protein Alpha-2-MRAP_C PF06401.11 gi|284163533|ref|YP_003401812.1| - 4.2 7.3 14.2 17 5.3 14.1 1.8 1 1 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain Sulfatase_C PF14707.6 gi|284163533|ref|YP_003401812.1| - 4.5 8.0 8.6 15 6.3 0.9 2.2 2 0 0 2 2 2 0 C-terminal region of aryl-sulfatase Tmemb_cc2 PF10267.9 gi|284163533|ref|YP_003401812.1| - 4.5 6.3 17.3 0.85 8.7 5.1 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein UPF0242 PF06785.11 gi|284163533|ref|YP_003401812.1| - 4.6 7.3 30.8 0.69 10.0 13.7 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus End3 PF12761.7 gi|284163533|ref|YP_003401812.1| - 4.9 7.3 19.7 1.1 9.4 3.6 2.3 2 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 DUF4164 PF13747.6 gi|284163533|ref|YP_003401812.1| - 5.2 7.4 21.7 0.64 10.3 4.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) zf-C4pol PF14260.6 gi|284163533|ref|YP_003401812.1| - 5.2 7.6 8.1 17 6.0 1.2 2.3 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta MctB PF11382.8 gi|284163533|ref|YP_003401812.1| - 5.3 6.7 20.3 6.1 6.5 5.2 2.2 2 1 0 2 2 2 0 Copper transport outer membrane protein, MctB BRE1 PF08647.11 gi|284163533|ref|YP_003401812.1| - 5.3 7.2 22.9 1.9 8.6 4.9 2.5 2 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase MutS_IV PF05190.18 gi|284163533|ref|YP_003401812.1| - 5.5 7.4 12.4 10 6.5 1.1 3.1 2 1 1 3 3 2 0 MutS family domain IV Med4 PF10018.9 gi|284163533|ref|YP_003401812.1| - 5.9 6.5 16.5 3.6 7.2 2.9 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Rho_Binding PF08912.11 gi|284163533|ref|YP_003401812.1| - 5.9 7.8 26.7 9.2 7.2 6.5 2.9 2 1 0 2 2 2 0 Rho Binding Sec8_exocyst PF04048.14 gi|284163533|ref|YP_003401812.1| - 6.1 6.7 14.0 0.4 10.6 3.7 2.2 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Swi5 PF07061.11 gi|284163533|ref|YP_003401812.1| - 6.3 7.0 22.7 2.1 8.5 5.3 3.0 2 1 0 2 2 2 0 Swi5 Mod_r PF07200.13 gi|284163533|ref|YP_003401812.1| - 6.3 6.9 26.3 42 4.2 26.3 1.9 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein FTA4 PF13093.6 gi|284163533|ref|YP_003401812.1| - 6.9 6.5 16.2 4.6 7.1 13.8 1.7 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Nup54 PF13874.6 gi|284163533|ref|YP_003401812.1| - 7.6 6.6 17.3 8 6.6 5.2 2.3 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 SAS4 PF15460.6 gi|284163533|ref|YP_003401812.1| - 7.7 6.7 17.1 0.18 12.0 5.2 2.8 2 2 1 3 3 2 0 Something about silencing, SAS, complex subunit 4 KfrA_N PF11740.8 gi|284163533|ref|YP_003401812.1| - 7.9 7.2 30.7 2.1 9.0 10.1 2.9 2 1 1 3 3 2 0 Plasmid replication region DNA-binding N-term DUF241 PF03087.14 gi|284163533|ref|YP_003401812.1| - 8 6.2 11.5 3.4 7.5 1.6 2.4 2 0 0 2 2 2 0 Arabidopsis protein of unknown function Exonuc_VII_L PF02601.15 gi|284163533|ref|YP_003401812.1| - 8.4 5.9 16.8 2.4e+02 1.1 16.5 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit ABC_tran_CTD PF16326.5 gi|284163533|ref|YP_003401812.1| - 8.9 6.6 39.2 3.9 7.8 12.1 3.6 2 2 1 3 3 3 0 ABC transporter C-terminal domain Acetyltransf_11 PF13720.6 gi|284163533|ref|YP_003401812.1| - 9.7 6.7 7.4 11 6.6 0.2 2.7 2 1 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FAD-SLDH PF12318.8 gi|284163533|ref|YP_003401812.1| - 9.8 6.2 9.5 5.5 7.0 1.5 2.2 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase SRP54 PF00448.22 gi|284163534|ref|YP_003401813.1| - 1.3e-69 233.8 0.1 1.9e-69 233.3 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|284163534|ref|YP_003401813.1| - 3.7e-13 49.5 0.3 3.7e-13 49.5 0.3 2.6 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.20 gi|284163534|ref|YP_003401813.1| - 4.5e-05 23.4 0.0 8.4e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|284163534|ref|YP_003401813.1| - 0.00021 21.0 0.2 0.0086 15.8 0.1 2.9 3 0 0 3 3 3 1 Thymidylate kinase CbiA PF01656.23 gi|284163534|ref|YP_003401813.1| - 0.00072 19.6 0.1 0.0016 18.5 0.1 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|284163534|ref|YP_003401813.1| - 0.00099 18.9 0.8 0.0035 17.1 0.8 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284163534|ref|YP_003401813.1| - 0.0023 18.3 0.0 0.0023 18.3 0.0 2.8 2 2 0 2 2 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|284163534|ref|YP_003401813.1| - 0.003 17.8 0.4 0.003 17.8 0.4 3.3 4 1 0 4 4 3 1 AAA domain Zeta_toxin PF06414.12 gi|284163534|ref|YP_003401813.1| - 0.0048 16.2 0.0 0.0087 15.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 gi|284163534|ref|YP_003401813.1| - 0.0078 15.7 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|284163534|ref|YP_003401813.1| - 0.018 14.9 0.1 0.044 13.7 0.1 1.6 1 0 0 1 1 1 0 NTPase ATP_bind_1 PF03029.17 gi|284163534|ref|YP_003401813.1| - 0.034 13.9 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.6 gi|284163534|ref|YP_003401813.1| - 0.036 14.5 0.1 0.036 14.5 0.1 3.1 4 0 0 4 4 3 0 AAA domain MeaB PF03308.16 gi|284163534|ref|YP_003401813.1| - 0.037 13.0 0.0 0.067 12.2 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|284163534|ref|YP_003401813.1| - 0.057 13.7 0.1 0.18 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain 6PF2K PF01591.18 gi|284163534|ref|YP_003401813.1| - 0.069 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 6-phosphofructo-2-kinase TRAM_2 PF18693.1 gi|284163534|ref|YP_003401813.1| - 0.08 13.1 1.0 0.19 11.9 0.1 2.1 2 0 0 2 2 2 0 TRAM domain LytR_C PF13399.6 gi|284163534|ref|YP_003401813.1| - 0.1 13.6 0.4 0.1 13.6 0.4 2.7 3 0 0 3 3 2 0 LytR cell envelope-related transcriptional attenuator AAA_24 PF13479.6 gi|284163534|ref|YP_003401813.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|284163534|ref|YP_003401813.1| - 0.26 10.8 0.0 0.45 10.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NIR_SIR PF01077.22 gi|284163536|ref|YP_003401815.1| - 1.3e-48 164.5 0.0 2.5e-37 127.8 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|284163536|ref|YP_003401815.1| - 2.3e-29 101.0 0.1 8.2e-14 51.2 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|284163536|ref|YP_003401815.1| - 0.029 14.5 0.1 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 DGC domain zf-HC2 PF13490.6 gi|284163536|ref|YP_003401815.1| - 0.033 14.4 1.1 16 5.9 0.4 3.1 3 0 0 3 3 3 0 Putative zinc-finger Toxin_TOLIP PF00087.21 gi|284163536|ref|YP_003401815.1| - 0.093 13.0 0.1 18 5.7 0.0 2.8 2 0 0 2 2 2 0 Snake toxin and toxin-like protein FrhB_FdhB_C PF04432.13 gi|284163537|ref|YP_003401816.1| - 3e-30 105.1 0.5 5.3e-30 104.3 0.0 1.6 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|284163537|ref|YP_003401816.1| - 1.5e-19 69.9 0.0 3.4e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_16 PF13484.6 gi|284163537|ref|YP_003401816.1| - 1.6e-09 38.6 1.8 0.0054 17.6 0.1 3.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|284163537|ref|YP_003401816.1| - 2.1e-09 37.4 6.2 2.1e-09 37.4 6.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284163537|ref|YP_003401816.1| - 7.3e-09 35.1 18.8 5.5e-07 29.1 4.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|284163537|ref|YP_003401816.1| - 2.8e-07 31.0 8.4 0.00014 22.3 0.1 3.3 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284163537|ref|YP_003401816.1| - 3.9e-07 30.1 11.5 9.8e-07 28.9 8.5 2.7 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284163537|ref|YP_003401816.1| - 6.1e-07 29.5 13.5 6.1e-07 29.5 10.0 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284163537|ref|YP_003401816.1| - 7.6e-06 25.8 3.7 7.6e-06 25.8 3.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284163537|ref|YP_003401816.1| - 4.7e-05 23.2 3.3 4.7e-05 23.2 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|284163537|ref|YP_003401816.1| - 8.9e-05 23.0 7.5 0.011 16.2 0.2 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284163537|ref|YP_003401816.1| - 0.00072 19.9 20.9 0.0015 18.9 4.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284163537|ref|YP_003401816.1| - 0.0071 16.5 2.3 0.0071 16.5 2.3 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|284163537|ref|YP_003401816.1| - 0.047 14.7 4.7 0.047 14.7 4.7 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284163537|ref|YP_003401816.1| - 0.074 13.5 14.8 0.83 10.1 4.4 3.3 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|284163537|ref|YP_003401816.1| - 0.087 13.4 19.8 0.11 13.1 4.3 4.0 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I ELH PF02323.15 gi|284163537|ref|YP_003401816.1| - 0.26 10.7 0.2 0.51 9.7 0.0 1.5 2 0 0 2 2 2 0 Egg-laying hormone precursor PAP2 PF01569.21 gi|284163538|ref|YP_003401817.1| - 1.4e-18 67.0 3.1 1.4e-18 67.0 3.1 2.1 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|284163538|ref|YP_003401817.1| - 2.1e-11 43.9 8.5 2.1e-11 43.9 8.5 1.9 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|284163538|ref|YP_003401817.1| - 0.0088 16.6 1.9 0.0088 16.6 1.9 2.5 2 1 1 3 3 3 1 PAP2 superfamily C-terminal GPI2 PF06432.11 gi|284163538|ref|YP_003401817.1| - 0.43 10.0 8.0 0.79 9.1 8.0 1.4 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase UPF0014 PF03649.13 gi|284163538|ref|YP_003401817.1| - 0.49 9.7 10.2 17 4.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0014) CCB2_CCB4 PF11152.8 gi|284163538|ref|YP_003401817.1| - 0.63 9.3 3.9 2.2 7.5 2.2 2.1 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 Mem_trans PF03547.18 gi|284163539|ref|YP_003401818.1| - 1.2e-23 83.2 21.0 3.8e-13 48.6 11.5 2.1 2 0 0 2 2 2 2 Membrane transport protein DUF1358 PF07096.11 gi|284163539|ref|YP_003401818.1| - 0.01 15.8 1.2 0.023 14.7 1.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) CbtB PF09489.10 gi|284163539|ref|YP_003401818.1| - 9.9 6.4 10.7 0.75 9.9 0.5 3.5 2 1 1 3 3 3 0 Probable cobalt transporter subunit (CbtB) Acetyltransf_4 PF13420.7 gi|284163540|ref|YP_003401819.1| - 3.5e-30 105.2 0.0 4.1e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284163540|ref|YP_003401819.1| - 1.9e-12 47.4 0.0 2.6e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284163540|ref|YP_003401819.1| - 5.5e-08 33.1 0.0 8.2e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284163540|ref|YP_003401819.1| - 6.5e-08 32.6 0.0 8.9e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284163540|ref|YP_003401819.1| - 1e-06 29.5 0.0 1.4e-06 29.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284163540|ref|YP_003401819.1| - 0.0029 17.6 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein PrcB_C PF14343.6 gi|284163540|ref|YP_003401819.1| - 0.085 13.0 0.1 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 PrcB C-terminal TMP-TENI PF02581.17 gi|284163541|ref|YP_003401820.1| - 1.8e-61 206.6 2.2 2.2e-61 206.4 2.2 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|284163541|ref|YP_003401820.1| - 3.2e-06 26.8 7.4 4.5e-06 26.3 7.4 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|284163541|ref|YP_003401820.1| - 0.002 17.5 4.2 0.0038 16.6 4.2 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|284163541|ref|YP_003401820.1| - 0.16 11.1 2.0 0.39 9.8 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF561) DHO_dh PF01180.21 gi|284163541|ref|YP_003401820.1| - 0.17 11.0 7.7 0.15 11.3 2.1 2.1 1 1 1 2 2 2 0 Dihydroorotate dehydrogenase HK PF02110.15 gi|284163542|ref|YP_003401821.1| - 2.5e-63 213.8 1.5 2.8e-63 213.6 1.5 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|284163542|ref|YP_003401821.1| - 6.4e-08 32.3 0.4 9.6e-08 31.7 0.4 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|284163542|ref|YP_003401821.1| - 0.00033 20.2 0.9 0.00045 19.8 0.9 1.2 1 0 0 1 1 1 1 Carbohydrate kinase DUF4407 PF14362.6 gi|284163543|ref|YP_003401822.1| - 0.38 10.1 3.4 0.42 9.9 3.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Rubrerythrin PF02915.17 gi|284163544|ref|YP_003401823.1| - 4.1e-05 24.0 2.0 0.00076 19.9 0.5 2.3 2 0 0 2 2 2 1 Rubrerythrin FTA4 PF13093.6 gi|284163544|ref|YP_003401823.1| - 0.021 14.7 0.3 0.042 13.7 0.0 1.6 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Ferritin PF00210.24 gi|284163544|ref|YP_003401823.1| - 0.026 14.4 3.3 0.034 14.1 1.9 2.0 1 1 0 1 1 1 0 Ferritin-like domain Polysacc_deac_1 PF01522.21 gi|284163545|ref|YP_003401824.1| - 3.5e-10 39.8 0.0 5.9e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|284163545|ref|YP_003401824.1| - 0.0053 16.4 0.0 0.0089 15.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) DUF2391 PF09622.10 gi|284163546|ref|YP_003401825.1| - 1.4e-05 24.6 1.3 1.7e-05 24.3 1.3 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Rhodanese PF00581.20 gi|284163547|ref|YP_003401826.1| - 4.2e-37 126.9 0.6 1.6e-18 67.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|284163548|ref|YP_003401827.1| - 4.7e-42 142.8 0.0 5.8e-22 78.2 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Asn_synthase PF00733.21 gi|284163549|ref|YP_003401828.1| - 1.2e-82 278.5 1.9 1.8e-82 277.9 1.9 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|284163549|ref|YP_003401828.1| - 5.7e-45 152.2 0.0 9.8e-45 151.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|284163549|ref|YP_003401828.1| - 1.6e-40 138.4 0.0 2.8e-40 137.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|284163549|ref|YP_003401828.1| - 1.3e-06 28.1 0.0 2.4e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Aluminium induced protein NAD_synthase PF02540.17 gi|284163549|ref|YP_003401828.1| - 0.0015 17.7 0.0 0.0024 17.0 0.0 1.3 1 0 0 1 1 1 1 NAD synthase DUF1933 PF09147.10 gi|284163549|ref|YP_003401828.1| - 0.0089 15.7 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1933) QueC PF06508.13 gi|284163549|ref|YP_003401828.1| - 0.011 15.2 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HATPase_c PF02518.26 gi|284163550|ref|YP_003401829.1| - 5.8e-26 91.2 0.0 1.1e-25 90.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|284163550|ref|YP_003401829.1| - 1e-12 48.9 0.1 2.7e-12 47.4 0.1 1.8 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|284163550|ref|YP_003401829.1| - 2.6e-10 40.2 0.0 2.6e-10 40.2 0.0 3.0 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284163550|ref|YP_003401829.1| - 1.2e-09 38.4 0.3 4e-09 36.7 0.3 2.0 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|284163550|ref|YP_003401829.1| - 1.1e-08 35.4 0.2 3.1e-08 34.0 0.2 1.8 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|284163550|ref|YP_003401829.1| - 6.9e-06 26.0 0.0 3.6e-05 23.7 0.0 2.3 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 gi|284163550|ref|YP_003401829.1| - 2.8e-05 24.5 0.0 6.2e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|284163550|ref|YP_003401829.1| - 0.00055 19.9 0.0 0.0015 18.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|284163550|ref|YP_003401829.1| - 0.0032 17.4 0.0 0.0078 16.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|284163550|ref|YP_003401829.1| - 0.0039 17.1 0.0 0.0081 16.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 gi|284163550|ref|YP_003401829.1| - 0.0065 16.7 0.0 0.021 15.1 0.0 2.0 1 0 0 1 1 1 1 PAS domain Pyr_redox_2 PF07992.14 gi|284163551|ref|YP_003401830.1| - 4.5e-48 164.0 3.7 6.5e-48 163.4 3.7 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|284163551|ref|YP_003401830.1| - 6.4e-29 100.4 0.2 1.2e-28 99.5 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|284163551|ref|YP_003401830.1| - 5.2e-17 62.2 2.6 4.3e-15 56.0 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284163551|ref|YP_003401830.1| - 2.5e-08 33.5 0.2 1.6e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|284163551|ref|YP_003401830.1| - 7.1e-07 28.7 0.0 2.7e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|284163551|ref|YP_003401830.1| - 8.4e-05 21.8 1.1 0.01 14.9 0.4 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|284163551|ref|YP_003401830.1| - 0.00041 19.6 1.1 0.00089 18.4 0.9 1.8 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|284163551|ref|YP_003401830.1| - 0.00066 19.6 0.4 0.011 15.6 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|284163551|ref|YP_003401830.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Terminase_4 PF05119.12 gi|284163551|ref|YP_003401830.1| - 0.047 14.1 0.0 0.092 13.2 0.0 1.4 1 0 0 1 1 1 0 Phage terminase, small subunit FAD_oxidored PF12831.7 gi|284163551|ref|YP_003401830.1| - 2.1 7.6 6.5 0.13 11.6 1.2 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284163551|ref|YP_003401830.1| - 3.3 8.0 6.9 6.9 7.0 0.6 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Virul_fac_BrkB PF03631.15 gi|284163552|ref|YP_003401831.1| - 1.2e-39 136.5 18.4 1.4e-39 136.2 18.4 1.1 1 0 0 1 1 1 1 Virulence factor BrkB TcdB_toxin_midN PF12256.8 gi|284163553|ref|YP_003401832.1| - 0.22 10.8 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Insecticide toxin TcdB middle/N-terminal region FG-GAP PF01839.23 gi|284163553|ref|YP_003401832.1| - 0.3 11.3 6.5 0.97 9.6 6.5 1.9 1 0 0 1 1 1 0 FG-GAP repeat HicB_lk_antitox PF15919.5 gi|284163554|ref|YP_003401833.1| - 0.023 14.8 0.1 0.026 14.6 0.1 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system GlnD_UR_UTase PF08335.11 gi|284163554|ref|YP_003401833.1| - 0.038 14.1 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 GlnD PII-uridylyltransferase TPR_14 PF13428.6 gi|284163554|ref|YP_003401833.1| - 0.07 14.0 0.4 0.14 13.0 0.1 1.7 2 0 0 2 2 2 0 Tetratricopeptide repeat PHD_like PF12910.7 gi|284163554|ref|YP_003401833.1| - 0.17 11.9 0.1 0.2 11.7 0.1 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system SRP54 PF00448.22 gi|284163555|ref|YP_003401834.1| - 3.2e-64 216.2 0.2 5.8e-64 215.3 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|284163555|ref|YP_003401834.1| - 9.8e-29 99.9 4.9 9.8e-29 99.9 4.9 3.1 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|284163555|ref|YP_003401834.1| - 4.2e-18 65.3 0.2 4.2e-18 65.3 0.2 2.9 4 0 0 4 4 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|284163555|ref|YP_003401834.1| - 0.00028 20.9 0.0 0.0013 18.8 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|284163555|ref|YP_003401834.1| - 0.00053 19.6 0.9 0.0048 16.5 0.9 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|284163555|ref|YP_003401834.1| - 0.0019 17.5 0.0 0.017 14.4 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin SMC_N PF02463.19 gi|284163555|ref|YP_003401834.1| - 0.0091 15.5 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|284163555|ref|YP_003401834.1| - 0.01 15.5 0.0 0.054 13.2 0.0 2.3 3 0 0 3 3 3 0 AAA domain CARD PF00619.21 gi|284163555|ref|YP_003401834.1| - 0.017 15.2 0.4 0.19 11.8 0.1 2.4 2 0 0 2 2 2 0 Caspase recruitment domain AAA_22 PF13401.6 gi|284163555|ref|YP_003401834.1| - 0.019 15.2 0.1 0.18 12.0 0.0 2.5 3 0 0 3 3 3 0 AAA domain DUF4618 PF15397.6 gi|284163555|ref|YP_003401834.1| - 0.029 13.8 0.7 0.029 13.8 0.7 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4618) Tex_YqgF PF16921.5 gi|284163555|ref|YP_003401834.1| - 0.03 14.8 0.0 0.077 13.5 0.0 1.7 1 0 0 1 1 1 0 Tex protein YqgF-like domain APS_kinase PF01583.20 gi|284163555|ref|YP_003401834.1| - 0.039 13.9 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|284163555|ref|YP_003401834.1| - 0.055 13.6 0.0 0.15 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|284163555|ref|YP_003401834.1| - 0.074 12.2 0.0 0.074 12.2 0.0 2.8 3 0 0 3 3 3 0 Anion-transporting ATPase DUF3562 PF12085.8 gi|284163555|ref|YP_003401834.1| - 0.14 11.8 0.0 0.41 10.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) KdpC PF02669.15 gi|284163555|ref|YP_003401834.1| - 0.18 11.6 0.1 0.43 10.4 0.1 1.6 1 0 0 1 1 1 0 K+-transporting ATPase, c chain AAA_25 PF13481.6 gi|284163555|ref|YP_003401834.1| - 0.19 11.3 2.8 1.2 8.6 2.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|284163555|ref|YP_003401834.1| - 0.32 11.4 0.1 0.32 11.4 0.1 2.8 3 1 0 3 3 3 0 AAA domain COG2 PF06148.11 gi|284163555|ref|YP_003401834.1| - 1 9.5 3.8 29 4.7 0.0 3.1 3 0 0 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 T3SS_basalb_I PF17001.5 gi|284163555|ref|YP_003401834.1| - 8 7.1 10.0 2.9 8.5 1.0 3.4 3 0 0 3 3 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI DUF937 PF06078.11 gi|284163555|ref|YP_003401834.1| - 8.1 7.0 11.6 3.8 8.1 0.6 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF937) Hpt PF01627.23 gi|284163555|ref|YP_003401834.1| - 8.1 6.8 7.0 1.4 9.2 0.4 3.1 4 0 0 4 4 4 0 Hpt domain Goodbye PF17109.5 gi|284163556|ref|YP_003401835.1| - 0.09 13.2 0.1 9.1 6.8 0.0 3.1 3 0 0 3 3 3 0 fungal STAND N-terminal Goodbye domain CBS PF00571.28 gi|284163557|ref|YP_003401836.1| - 1.4e-22 79.8 2.2 5.2e-13 49.2 0.4 2.7 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|284163557|ref|YP_003401836.1| - 1.8e-19 69.5 0.0 3e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284163557|ref|YP_003401836.1| - 6.4e-05 23.1 0.0 0.00016 21.8 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|284163557|ref|YP_003401836.1| - 0.022 15.1 0.0 0.052 13.9 0.0 1.7 1 0 0 1 1 1 0 Thioesterase superfamily Lysyl_oxidase PF01186.17 gi|284163559|ref|YP_003401838.1| - 1.5e-32 112.9 0.1 2.1e-32 112.5 0.1 1.1 1 0 0 1 1 1 1 Lysyl oxidase SpoIIIAH PF12685.7 gi|284163559|ref|YP_003401838.1| - 0.01 15.7 0.3 0.01 15.7 0.3 1.5 2 0 0 2 2 2 0 SpoIIIAH-like protein Trypan_PARP PF05887.11 gi|284163559|ref|YP_003401838.1| - 0.032 14.2 1.2 0.053 13.5 1.2 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF3040 PF11239.8 gi|284163559|ref|YP_003401838.1| - 0.076 13.3 0.2 0.13 12.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) RNA_binding PF01877.17 gi|284163560|ref|YP_003401839.1| - 8.8e-10 38.9 0.5 7.7e-09 35.9 0.5 2.0 1 1 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|284163561|ref|YP_003401840.1| - 7.5e-18 65.3 0.3 1.2e-17 64.6 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|284163561|ref|YP_003401840.1| - 5e-11 43.2 0.0 6.9e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|284163561|ref|YP_003401840.1| - 3.8e-06 27.1 0.0 5.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|284163561|ref|YP_003401840.1| - 5.7e-05 23.3 0.1 0.0001 22.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain PEP-utilizers PF00391.23 gi|284163561|ref|YP_003401840.1| - 0.0052 16.5 0.5 0.018 14.7 0.4 2.0 2 1 0 2 2 2 1 PEP-utilising enzyme, mobile domain LPAM_1 PF08139.12 gi|284163562|ref|YP_003401841.1| - 0.045 14.2 0.6 0.059 13.9 0.6 1.2 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site BPD_transp_2 PF02653.16 gi|284163562|ref|YP_003401841.1| - 0.2 10.8 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component YccF PF03733.13 gi|284163563|ref|YP_003401842.1| - 9.8e-07 29.4 22.5 0.00019 22.1 7.7 2.2 2 0 0 2 2 2 2 Inner membrane component domain Phage_Coat_Gp8 PF05371.12 gi|284163563|ref|YP_003401842.1| - 0.017 14.9 1.3 0.017 14.9 1.3 2.0 2 0 0 2 2 2 0 Phage major coat protein, Gp8 AAT PF03417.16 gi|284163564|ref|YP_003401843.1| - 4.9e-13 49.3 0.0 8.4e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase CBAH PF02275.18 gi|284163564|ref|YP_003401843.1| - 0.0027 17.4 0.0 0.0038 16.9 0.0 1.1 1 0 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family MEDS PF14417.6 gi|284163565|ref|YP_003401844.1| - 1.3e-49 168.1 1.5 1.3e-49 168.1 1.5 2.2 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|284163565|ref|YP_003401844.1| - 1.3e-30 106.2 0.0 7.6e-28 97.3 0.0 2.4 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|284163565|ref|YP_003401844.1| - 1.5e-17 63.7 0.8 2e-16 60.0 0.3 3.0 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|284163565|ref|YP_003401844.1| - 1.7e-09 37.5 0.1 1.7e-09 37.5 0.1 3.9 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain ATPase PF06745.13 gi|284163565|ref|YP_003401844.1| - 7.3e-08 32.0 0.2 1.7e-07 30.8 0.2 1.6 1 0 0 1 1 1 1 KaiC HATPase_c_5 PF14501.6 gi|284163565|ref|YP_003401844.1| - 1.1e-06 28.4 0.0 9.7e-06 25.4 0.0 2.3 2 0 0 2 2 2 1 GHKL domain PAS_4 PF08448.10 gi|284163565|ref|YP_003401844.1| - 8e-06 26.1 0.6 3e-05 24.2 0.6 2.0 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|284163565|ref|YP_003401844.1| - 0.00016 21.7 0.2 0.00065 19.7 0.1 2.3 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|284163565|ref|YP_003401844.1| - 0.00034 20.8 0.6 0.0046 17.2 0.1 3.1 2 1 1 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|284163565|ref|YP_003401844.1| - 0.00058 19.8 0.1 0.0027 17.7 0.0 2.0 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain Noelin-1 PF12308.8 gi|284163565|ref|YP_003401844.1| - 0.027 14.4 0.4 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 Neurogenesis glycoprotein UPF0449 PF15136.6 gi|284163565|ref|YP_003401844.1| - 0.12 12.9 2.5 0.87 10.1 0.5 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 UPF0242 PF06785.11 gi|284163565|ref|YP_003401844.1| - 3.1 7.9 8.0 17 5.4 0.6 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus GCS2 PF04107.13 gi|284163566|ref|YP_003401845.1| - 8.9e-06 25.2 0.9 7.5e-05 22.2 0.9 2.0 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Pyr_redox_2 PF07992.14 gi|284163567|ref|YP_003401846.1| - 1.2e-17 64.2 6.5 9e-11 41.5 0.6 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|284163567|ref|YP_003401846.1| - 2.4e-07 30.3 0.2 6.9e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|284163567|ref|YP_003401846.1| - 2.8e-07 30.0 0.5 4.1e-06 26.1 0.0 2.2 2 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|284163567|ref|YP_003401846.1| - 7.9e-07 28.6 0.0 0.0043 16.4 0.0 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284163567|ref|YP_003401846.1| - 1.1e-06 27.7 0.1 1.2e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|284163567|ref|YP_003401846.1| - 1.2e-06 28.3 1.6 0.00031 20.4 0.1 2.9 2 2 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|284163567|ref|YP_003401846.1| - 1.6e-06 27.4 0.3 1.1e-05 24.7 0.2 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|284163567|ref|YP_003401846.1| - 3.2e-05 24.1 0.2 0.00011 22.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284163567|ref|YP_003401846.1| - 0.00041 19.8 0.1 0.00074 19.0 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|284163567|ref|YP_003401846.1| - 0.0005 19.4 0.1 0.00078 18.8 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|284163567|ref|YP_003401846.1| - 0.00054 19.3 0.2 0.00097 18.4 0.0 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 gi|284163567|ref|YP_003401846.1| - 0.0033 17.4 0.6 2.8 7.9 0.0 2.7 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|284163567|ref|YP_003401846.1| - 0.0068 16.9 0.3 0.027 15.0 0.0 2.1 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|284163567|ref|YP_003401846.1| - 0.013 14.6 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Glu_dehyd_C PF16912.5 gi|284163567|ref|YP_003401846.1| - 0.02 14.4 0.2 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus 3HCDH_N PF02737.18 gi|284163567|ref|YP_003401846.1| - 0.098 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDC45 PF02724.14 gi|284163567|ref|YP_003401846.1| - 0.11 10.7 1.0 0.15 10.4 1.0 1.1 1 0 0 1 1 1 0 CDC45-like protein ACP_syn_III PF08545.10 gi|284163567|ref|YP_003401846.1| - 0.28 11.0 2.4 4.7 7.1 0.1 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Glyoxalase PF00903.25 gi|284163568|ref|YP_003401847.1| - 2.2e-10 40.8 0.1 3.7e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284163568|ref|YP_003401847.1| - 3.6e-05 24.0 0.0 6.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF3880 PF12996.7 gi|284163568|ref|YP_003401847.1| - 0.097 12.8 0.0 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 DUF based on E. rectale Gene description (DUF3880) Abhydrolase_2 PF02230.16 gi|284163569|ref|YP_003401848.1| - 2.5e-20 73.2 0.0 1.5e-19 70.7 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|284163569|ref|YP_003401848.1| - 4.4e-08 32.9 0.0 6.6e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|284163569|ref|YP_003401848.1| - 4.6e-07 29.3 0.4 0.53 9.5 0.0 3.0 2 1 1 3 3 3 3 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|284163569|ref|YP_003401848.1| - 0.0019 17.7 0.4 1.2 8.5 0.0 2.5 3 0 0 3 3 3 2 Prolyl oligopeptidase family Esterase_phd PF10503.9 gi|284163569|ref|YP_003401848.1| - 0.0067 16.0 0.0 0.0098 15.4 0.0 1.3 1 0 0 1 1 1 1 Esterase PHB depolymerase Abhydrolase_3 PF07859.13 gi|284163569|ref|YP_003401848.1| - 0.0071 16.2 0.3 1.4 8.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 gi|284163569|ref|YP_003401848.1| - 0.015 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) PE-PPE PF08237.11 gi|284163569|ref|YP_003401848.1| - 0.06 12.9 0.0 0.085 12.4 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Abhydrolase_1 PF00561.20 gi|284163569|ref|YP_003401848.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold UCR_Fe-S_N PF10399.9 gi|284163570|ref|YP_003401849.1| - 0.014 14.7 2.5 0.024 14.0 2.5 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Usp PF00582.26 gi|284163571|ref|YP_003401850.1| - 5.9e-32 111.1 2.7 6.7e-32 110.9 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family PHO4 PF01384.20 gi|284163572|ref|YP_003401851.1| - 5.5e-37 127.6 21.5 5.5e-37 127.6 21.5 1.6 1 1 1 2 2 2 1 Phosphate transporter family Peptidase_M29 PF02073.15 gi|284163573|ref|YP_003401852.1| - 1.4e-71 241.4 0.2 1.7e-71 241.1 0.2 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4083 PF13314.6 gi|284163575|ref|YP_003401854.1| - 0.034 14.1 3.5 0.038 13.9 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) CbiA PF01656.23 gi|284163576|ref|YP_003401855.1| - 2.9e-14 53.2 0.1 1.6e-13 50.8 0.1 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284163576|ref|YP_003401855.1| - 1.8e-11 44.3 0.0 7.3e-10 39.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|284163576|ref|YP_003401855.1| - 3.7e-09 36.7 2.0 2.2e-06 27.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain ParA PF10609.9 gi|284163576|ref|YP_003401855.1| - 5e-09 36.0 2.6 0.00078 19.0 0.8 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|284163576|ref|YP_003401855.1| - 5.3e-06 26.1 0.1 3.6e-05 23.4 0.1 2.0 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ PAXNEB PF05625.11 gi|284163576|ref|YP_003401855.1| - 2.1e-05 23.8 0.1 0.0074 15.5 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein MipZ PF09140.11 gi|284163576|ref|YP_003401855.1| - 2.7e-05 23.6 0.2 0.00013 21.4 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ATPase PF06745.13 gi|284163576|ref|YP_003401855.1| - 0.0086 15.4 0.4 0.51 9.6 0.0 2.6 2 1 0 3 3 3 1 KaiC Fer4_NifH PF00142.18 gi|284163576|ref|YP_003401855.1| - 0.012 15.1 0.1 4.7 6.6 0.0 2.4 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF853 PF05872.12 gi|284163576|ref|YP_003401855.1| - 0.015 13.9 0.1 0.026 13.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) AP_endonuc_2 PF01261.24 gi|284163576|ref|YP_003401855.1| - 0.025 14.0 0.0 2.3 7.6 0.0 2.3 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel FTHFS PF01268.19 gi|284163576|ref|YP_003401855.1| - 0.043 12.0 0.4 0.063 11.5 0.4 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase PRK PF00485.18 gi|284163576|ref|YP_003401855.1| - 0.049 13.4 0.0 0.084 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family VirC1 PF07015.11 gi|284163576|ref|YP_003401855.1| - 0.097 11.9 0.4 0.7 9.2 0.1 2.2 2 0 0 2 2 2 0 VirC1 protein CbiA PF01656.23 gi|284163577|ref|YP_003401856.1| - 7.7e-11 42.1 0.0 6.4e-10 39.2 0.0 2.2 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|284163577|ref|YP_003401856.1| - 3.8e-10 39.6 7.6 0.0004 19.9 0.0 2.7 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|284163577|ref|YP_003401856.1| - 6e-08 32.8 0.1 0.00051 20.0 0.3 2.3 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|284163577|ref|YP_003401856.1| - 1.1e-05 25.0 0.5 0.0014 18.2 0.0 2.4 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|284163577|ref|YP_003401856.1| - 0.00041 19.9 0.2 0.17 11.3 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|284163577|ref|YP_003401856.1| - 0.00052 19.4 0.3 0.37 10.0 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|284163577|ref|YP_003401856.1| - 0.0044 16.3 0.6 0.015 14.5 0.5 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_33 PF13671.6 gi|284163577|ref|YP_003401856.1| - 0.083 13.0 1.4 0.29 11.3 1.4 2.1 1 1 0 1 1 1 0 AAA domain DSPc PF00782.20 gi|284163577|ref|YP_003401856.1| - 0.22 11.4 0.0 1.2 9.0 0.0 1.9 2 0 0 2 2 2 0 Dual specificity phosphatase, catalytic domain AAA_26 PF13500.6 gi|284163577|ref|YP_003401856.1| - 0.39 10.5 2.0 4 7.2 2.0 2.3 1 1 0 1 1 1 0 AAA domain adh_short PF00106.25 gi|284163577|ref|YP_003401856.1| - 0.94 8.9 2.7 18 4.7 0.4 2.4 2 1 0 2 2 2 0 short chain dehydrogenase Gp_dh_C PF02800.20 gi|284163579|ref|YP_003401858.1| - 3e-18 65.9 0.0 5e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|284163579|ref|YP_003401858.1| - 1.9e-09 37.7 0.1 4.7e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|284163579|ref|YP_003401858.1| - 2.7e-05 24.4 0.2 9.2e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|284163579|ref|YP_003401858.1| - 0.00026 21.6 0.1 0.00065 20.3 0.1 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|284163579|ref|YP_003401858.1| - 0.013 14.8 0.1 0.068 12.5 0.1 2.1 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|284163579|ref|YP_003401858.1| - 0.066 14.0 0.1 0.14 13.0 0.1 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ArsA_HSP20 PF17886.1 gi|284163580|ref|YP_003401859.1| - 4.5e-20 71.0 0.0 6.1e-20 70.5 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|284163580|ref|YP_003401859.1| - 2.4e-10 40.5 0.2 3.8e-09 36.6 0.2 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|284163580|ref|YP_003401859.1| - 2.4e-06 27.7 0.7 3.1e-06 27.4 0.7 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|284163580|ref|YP_003401859.1| - 0.025 15.0 0.0 0.035 14.5 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain CS PF04969.16 gi|284163580|ref|YP_003401859.1| - 0.052 14.6 0.1 0.09 13.8 0.1 1.5 1 0 0 1 1 1 0 CS domain RimK PF08443.11 gi|284163581|ref|YP_003401860.1| - 5.9e-22 78.2 0.0 7.3e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|284163581|ref|YP_003401860.1| - 7.6e-12 45.0 0.0 1.1e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|284163581|ref|YP_003401860.1| - 4.9e-07 29.9 0.0 8.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|284163581|ref|YP_003401860.1| - 7.2e-05 22.2 0.0 0.013 14.8 0.0 2.3 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp TTL PF03133.15 gi|284163581|ref|YP_003401860.1| - 0.0024 17.1 0.0 0.028 13.6 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family Dala_Dala_lig_C PF07478.13 gi|284163581|ref|YP_003401860.1| - 0.0036 16.9 0.0 0.007 15.9 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_TupA PF14305.6 gi|284163581|ref|YP_003401860.1| - 0.0091 15.8 0.0 0.02 14.7 0.0 1.5 2 0 0 2 2 2 1 TupA-like ATPgrasp R2K_3 PF14243.6 gi|284163581|ref|YP_003401860.1| - 0.011 15.7 0.4 0.015 15.3 0.4 1.2 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 CPSase_L_D2 PF02786.17 gi|284163581|ref|YP_003401860.1| - 0.078 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Ribosomal_L16 PF00252.18 gi|284163582|ref|YP_003401861.1| - 7.7e-32 110.1 0.1 8.9e-32 109.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e B-block_TFIIIC PF04182.12 gi|284163583|ref|YP_003401862.1| - 0.083 13.1 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC CBS PF00571.28 gi|284163584|ref|YP_003401863.1| - 1.4e-24 86.3 4.9 2.7e-13 50.1 0.9 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|284163584|ref|YP_003401863.1| - 1.6e-12 47.3 5.6 6e-07 29.0 0.2 3.0 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|284163584|ref|YP_003401863.1| - 0.00047 19.8 2.4 0.00047 19.8 2.4 2.0 2 0 0 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|284163584|ref|YP_003401863.1| - 0.0048 17.2 0.7 0.0048 17.2 0.7 1.9 2 0 0 2 2 2 1 Putative zincin peptidase ABC_tran PF00005.27 gi|284163585|ref|YP_003401864.1| - 9.3e-31 107.2 0.0 1.6e-30 106.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163585|ref|YP_003401864.1| - 1.5e-14 54.6 2.8 1.2e-09 38.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284163585|ref|YP_003401864.1| - 2.2e-09 37.9 0.0 8.2e-09 36.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|284163585|ref|YP_003401864.1| - 0.00031 20.5 0.1 0.0016 18.2 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284163585|ref|YP_003401864.1| - 0.0048 17.4 0.3 0.012 16.2 0.1 1.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|284163585|ref|YP_003401864.1| - 0.0072 16.1 0.1 1.8 8.2 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein SMC_N PF02463.19 gi|284163585|ref|YP_003401864.1| - 0.0089 15.5 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|284163585|ref|YP_003401864.1| - 0.021 14.6 0.0 1.4 8.6 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284163585|ref|YP_003401864.1| - 0.021 14.7 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|284163585|ref|YP_003401864.1| - 0.048 13.4 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|284163585|ref|YP_003401864.1| - 0.056 13.2 0.2 0.47 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|284163585|ref|YP_003401864.1| - 0.061 13.2 0.0 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|284163585|ref|YP_003401864.1| - 0.077 13.1 0.2 0.22 11.6 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|284163585|ref|YP_003401864.1| - 0.09 12.7 0.1 1.1 9.2 0.0 2.4 3 0 0 3 3 3 0 NTPase ATP_bind_1 PF03029.17 gi|284163585|ref|YP_003401864.1| - 0.12 12.1 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|284163585|ref|YP_003401864.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 gi|284163585|ref|YP_003401864.1| - 0.17 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea FlbD PF06289.11 gi|284163585|ref|YP_003401864.1| - 0.26 10.9 1.3 0.94 9.1 0.3 2.2 2 0 0 2 2 2 0 Flagellar and Swarming motility proteins ABC2_membrane PF01061.24 gi|284163586|ref|YP_003401865.1| - 3.3e-30 105.1 13.9 4.9e-30 104.5 13.9 1.3 1 0 0 1 1 1 1 ABC-2 type transporter DUF4870 PF09685.10 gi|284163587|ref|YP_003401866.1| - 6.9e-22 77.6 3.4 8e-22 77.4 3.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) zinc_ribbon_2 PF13240.6 gi|284163587|ref|YP_003401866.1| - 1.1e-07 31.4 2.8 1.7e-07 30.7 2.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|284163587|ref|YP_003401866.1| - 1.6e-06 27.3 3.7 2.6e-06 26.6 3.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|284163587|ref|YP_003401866.1| - 1.1e-05 25.4 1.3 1.9e-05 24.6 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|284163587|ref|YP_003401866.1| - 0.0029 17.5 1.9 1.2 9.2 0.0 2.8 3 0 0 3 3 3 2 Nudix N-terminal zinc_ribbon_15 PF17032.5 gi|284163587|ref|YP_003401866.1| - 0.01 16.5 2.1 0.016 15.9 2.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family UPF0547 PF10571.9 gi|284163587|ref|YP_003401866.1| - 0.02 15.0 3.6 0.037 14.1 3.6 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|284163587|ref|YP_003401866.1| - 0.18 11.5 1.0 14 5.4 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF35_N PF12172.8 gi|284163587|ref|YP_003401866.1| - 0.27 11.1 4.0 4 7.4 5.1 2.3 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-dskA_traR PF01258.17 gi|284163587|ref|YP_003401866.1| - 0.36 10.8 0.1 0.36 10.8 0.1 1.8 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger MqsA_antitoxin PF15731.5 gi|284163587|ref|YP_003401866.1| - 0.39 10.8 2.2 6.2 6.9 0.2 2.2 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA DUF2116 PF09889.9 gi|284163587|ref|YP_003401866.1| - 0.88 9.6 7.9 0.14 12.2 2.6 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-NADH-PPase PF09297.11 gi|284163587|ref|YP_003401866.1| - 0.89 9.3 4.6 15 5.3 0.1 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DHHC PF01529.20 gi|284163587|ref|YP_003401866.1| - 1.9 8.6 8.3 0.5 10.5 0.4 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase SdpI PF13630.6 gi|284163587|ref|YP_003401866.1| - 3 8.0 6.1 2.2 8.4 4.3 1.8 2 0 0 2 2 2 0 SdpI/YhfL protein family Zn-ribbon_8 PF09723.10 gi|284163587|ref|YP_003401866.1| - 7.2 6.8 6.0 7.4 6.8 1.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Abhydrolase_1 PF00561.20 gi|284163588|ref|YP_003401867.1| - 5.7e-15 55.6 1.2 8e-15 55.2 1.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284163588|ref|YP_003401867.1| - 1e-10 42.6 14.4 1.3e-10 42.3 14.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284163588|ref|YP_003401867.1| - 0.00018 20.8 0.4 0.00026 20.3 0.4 1.3 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|284163588|ref|YP_003401867.1| - 0.018 14.7 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Putative esterase ADH_N_2 PF16884.5 gi|284163589|ref|YP_003401868.1| - 7.4e-42 141.6 0.1 1.3e-41 140.8 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|284163589|ref|YP_003401868.1| - 4.4e-21 75.2 0.0 6.2e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284163589|ref|YP_003401868.1| - 2.7e-10 41.4 0.0 5.1e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pro_CA PF00484.19 gi|284163590|ref|YP_003401869.1| - 3e-25 89.3 0.0 4e-25 88.9 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase TetR_C_11 PF16859.5 gi|284163590|ref|YP_003401869.1| - 0.047 14.0 0.1 0.37 11.1 0.1 2.3 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Gag_spuma PF03276.14 gi|284163590|ref|YP_003401869.1| - 0.088 11.2 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Spumavirus gag protein UPF0126 PF03458.13 gi|284163591|ref|YP_003401870.1| - 5e-32 109.6 29.8 3.2e-18 65.4 11.4 2.6 2 1 0 2 2 2 2 UPF0126 domain DUF2309 PF10070.9 gi|284163592|ref|YP_003401871.1| - 1.8e-271 902.8 0.0 2e-271 902.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) SseC PF04888.12 gi|284163592|ref|YP_003401871.1| - 0.18 11.3 0.0 0.32 10.5 0.0 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Proton_antipo_M PF00361.20 gi|284163593|ref|YP_003401872.1| - 9.7e-41 139.9 20.3 9.7e-41 139.9 20.3 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|284163593|ref|YP_003401872.1| - 1.6e-13 50.5 0.4 1.1e-12 47.8 0.4 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.11 gi|284163593|ref|YP_003401872.1| - 0.046 13.8 0.1 3.2 7.9 0.0 2.8 2 0 0 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) HTH_24 PF13412.6 gi|284163594|ref|YP_003401873.1| - 5.9e-15 54.6 0.6 9.4e-15 53.9 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284163594|ref|YP_003401873.1| - 4.8e-11 42.3 2.1 8e-11 41.6 2.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284163594|ref|YP_003401873.1| - 7.9e-09 35.3 0.2 1.6e-08 34.3 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|284163594|ref|YP_003401873.1| - 2.8e-06 27.0 0.0 4.8e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284163594|ref|YP_003401873.1| - 4.8e-06 26.4 0.0 8.8e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|284163594|ref|YP_003401873.1| - 1.2e-05 25.4 0.2 2.7e-05 24.3 0.2 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|284163594|ref|YP_003401873.1| - 1.6e-05 24.7 0.1 2.9e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284163594|ref|YP_003401873.1| - 3.2e-05 23.9 0.1 6e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|284163594|ref|YP_003401873.1| - 6.5e-05 23.2 0.0 0.00018 21.8 0.1 1.7 2 0 0 2 2 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|284163594|ref|YP_003401873.1| - 9.8e-05 22.0 0.3 0.0002 20.9 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.11 gi|284163594|ref|YP_003401873.1| - 0.00026 20.9 0.0 0.00087 19.3 0.0 1.8 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 gi|284163594|ref|YP_003401873.1| - 0.00037 20.2 0.0 0.0043 16.8 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|284163594|ref|YP_003401873.1| - 0.0015 19.0 0.1 0.0031 18.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|284163594|ref|YP_003401873.1| - 0.0019 17.9 0.2 0.0033 17.2 0.2 1.3 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|284163594|ref|YP_003401873.1| - 0.0019 17.8 0.2 0.0034 17.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|284163594|ref|YP_003401873.1| - 0.0021 18.0 0.1 0.0039 17.1 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|284163594|ref|YP_003401873.1| - 0.0024 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_28 PF13518.6 gi|284163594|ref|YP_003401873.1| - 0.0027 17.8 0.1 0.0046 17.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284163594|ref|YP_003401873.1| - 0.0028 17.5 0.0 0.0051 16.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Put_DNA-bind_N PF06971.13 gi|284163594|ref|YP_003401873.1| - 0.0035 17.3 0.4 0.0076 16.2 0.4 1.5 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_12 PF08461.10 gi|284163594|ref|YP_003401873.1| - 0.0039 17.1 1.0 0.024 14.6 0.5 2.6 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain Sigma70_r4 PF04545.16 gi|284163594|ref|YP_003401873.1| - 0.0045 16.5 0.6 0.0079 15.7 0.6 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Nuc_N PF14448.6 gi|284163594|ref|YP_003401873.1| - 0.0057 16.5 0.2 0.01 15.6 0.2 1.4 1 0 0 1 1 1 1 Nuclease N terminal TrmB PF01978.19 gi|284163594|ref|YP_003401873.1| - 0.0065 16.3 0.1 0.0098 15.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|284163594|ref|YP_003401873.1| - 0.0066 16.5 0.1 0.089 12.9 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.6 gi|284163594|ref|YP_003401873.1| - 0.038 14.0 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Phage_antitermQ PF06530.12 gi|284163594|ref|YP_003401873.1| - 0.053 13.4 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Phage antitermination protein Q Ribosomal_S25 PF03297.15 gi|284163594|ref|YP_003401873.1| - 0.081 13.1 0.2 0.22 11.8 0.0 1.7 2 0 0 2 2 2 0 S25 ribosomal protein HTH_10 PF04967.12 gi|284163594|ref|YP_003401873.1| - 0.1 12.4 0.2 0.2 11.5 0.2 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_CodY PF08222.11 gi|284163594|ref|YP_003401873.1| - 0.12 11.9 0.5 0.26 10.9 0.2 1.7 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_6 PF01418.17 gi|284163594|ref|YP_003401873.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Replic_Relax PF13814.6 gi|284163594|ref|YP_003401873.1| - 0.16 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.6 gi|284163594|ref|YP_003401873.1| - 0.18 11.8 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|284163594|ref|YP_003401873.1| - 0.2 11.6 0.8 0.34 10.9 0.4 1.5 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF805 PF05656.14 gi|284163595|ref|YP_003401874.1| - 6.2e-05 23.4 0.3 7.2e-05 23.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF805) ABC2_membrane_3 PF12698.7 gi|284163595|ref|YP_003401874.1| - 3.7 6.6 7.5 4.4 6.3 7.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein CSD PF00313.22 gi|284163596|ref|YP_003401875.1| - 2.8e-20 72.0 0.0 3e-20 71.8 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|284163596|ref|YP_003401875.1| - 0.039 13.6 2.2 0.049 13.3 2.2 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|284163596|ref|YP_003401875.1| - 0.18 11.7 0.3 0.27 11.2 0.3 1.4 1 1 0 1 1 1 0 S1-like Tail_VII PF17091.5 gi|284163597|ref|YP_003401876.1| - 2.5 8.0 5.4 59 3.7 5.4 2.1 1 1 0 1 1 1 0 Inovirus G7P protein Cupin_2 PF07883.11 gi|284163598|ref|YP_003401877.1| - 6.3e-19 67.5 0.4 1.1e-18 66.7 0.4 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|284163598|ref|YP_003401877.1| - 7.9e-09 35.3 0.0 1.2e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|284163598|ref|YP_003401877.1| - 1e-06 28.7 0.1 1.3e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|284163598|ref|YP_003401877.1| - 2.4e-05 24.2 0.0 3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|284163598|ref|YP_003401877.1| - 0.00055 19.6 0.1 0.00082 19.0 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|284163598|ref|YP_003401877.1| - 0.004 17.3 0.0 0.0052 17.0 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like ARD PF03079.14 gi|284163598|ref|YP_003401877.1| - 0.0067 16.6 0.0 0.0094 16.1 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_7 PF12973.7 gi|284163598|ref|YP_003401877.1| - 0.034 14.1 0.1 0.042 13.8 0.1 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_6 PF12852.7 gi|284163598|ref|YP_003401877.1| - 0.14 11.8 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Cupin EutQ PF06249.12 gi|284163598|ref|YP_003401877.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ FecCD PF01032.18 gi|284163599|ref|YP_003401878.1| - 1.4e-83 280.5 37.5 1.9e-83 280.1 37.5 1.2 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|284163600|ref|YP_003401879.1| - 1.5e-30 106.5 0.0 2e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163600|ref|YP_003401879.1| - 1.3e-13 51.4 1.8 6.3e-06 26.2 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284163600|ref|YP_003401879.1| - 1.1e-11 44.6 0.6 2.2e-10 40.4 0.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284163600|ref|YP_003401879.1| - 2.5e-06 27.8 0.2 9.3e-06 26.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284163600|ref|YP_003401879.1| - 1.4e-05 24.8 0.0 3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|284163600|ref|YP_003401879.1| - 5.9e-05 22.1 0.1 0.11 11.2 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|284163600|ref|YP_003401879.1| - 6.4e-05 22.8 0.0 0.00021 21.1 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|284163600|ref|YP_003401879.1| - 0.00014 22.3 0.3 0.00027 21.4 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|284163600|ref|YP_003401879.1| - 0.00018 21.3 0.0 0.0004 20.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|284163600|ref|YP_003401879.1| - 0.00034 20.5 0.0 0.023 14.5 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|284163600|ref|YP_003401879.1| - 0.00036 20.2 0.2 0.0049 16.5 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284163600|ref|YP_003401879.1| - 0.00044 20.8 0.1 0.00056 20.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain HD PF01966.22 gi|284163600|ref|YP_003401879.1| - 0.00048 20.3 0.2 0.0014 18.9 0.2 1.7 1 0 0 1 1 1 1 HD domain AAA_33 PF13671.6 gi|284163600|ref|YP_003401879.1| - 0.00081 19.6 0.1 0.0027 17.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284163600|ref|YP_003401879.1| - 0.002 18.1 0.0 0.0036 17.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|284163600|ref|YP_003401879.1| - 0.0024 18.2 0.1 0.0041 17.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|284163600|ref|YP_003401879.1| - 0.0029 16.9 0.0 0.0052 16.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.21 gi|284163600|ref|YP_003401879.1| - 0.0054 16.1 0.0 3 7.2 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|284163600|ref|YP_003401879.1| - 0.0058 17.2 0.0 0.014 15.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|284163600|ref|YP_003401879.1| - 0.0061 16.6 0.0 0.017 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|284163600|ref|YP_003401879.1| - 0.01 15.4 0.1 0.048 13.3 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|284163600|ref|YP_003401879.1| - 0.011 15.6 0.0 0.028 14.3 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|284163600|ref|YP_003401879.1| - 0.015 15.2 0.1 0.038 13.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA PF00004.29 gi|284163600|ref|YP_003401879.1| - 0.02 15.3 0.0 0.048 14.1 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284163600|ref|YP_003401879.1| - 0.022 14.8 0.0 0.07 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|284163600|ref|YP_003401879.1| - 0.031 14.4 0.1 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|284163600|ref|YP_003401879.1| - 0.033 13.7 0.0 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|284163600|ref|YP_003401879.1| - 0.035 13.7 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|284163600|ref|YP_003401879.1| - 0.037 14.0 0.1 0.18 11.7 0.1 2.0 1 1 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|284163600|ref|YP_003401879.1| - 0.04 13.6 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|284163600|ref|YP_003401879.1| - 0.044 13.2 0.1 2.1 7.7 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|284163600|ref|YP_003401879.1| - 0.055 13.9 0.0 0.091 13.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|284163600|ref|YP_003401879.1| - 0.064 12.4 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MukB PF04310.12 gi|284163600|ref|YP_003401879.1| - 0.078 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal APS_kinase PF01583.20 gi|284163600|ref|YP_003401879.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_27 PF13514.6 gi|284163600|ref|YP_003401879.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|284163600|ref|YP_003401879.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Rad17 PF03215.15 gi|284163600|ref|YP_003401879.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain VirE PF05272.11 gi|284163600|ref|YP_003401879.1| - 0.2 11.4 0.0 0.45 10.2 0.0 1.6 1 1 0 1 1 1 0 Virulence-associated protein E G-alpha PF00503.20 gi|284163600|ref|YP_003401879.1| - 0.24 10.5 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Peripla_BP_2 PF01497.18 gi|284163601|ref|YP_003401880.1| - 5e-19 68.8 0.0 7.9e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|284163601|ref|YP_003401880.1| - 1.7e-05 24.4 2.5 1.7e-05 24.4 2.5 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence SHNi-TPR PF10516.9 gi|284163601|ref|YP_003401880.1| - 0.066 12.7 0.8 0.13 11.7 0.3 1.8 2 0 0 2 2 2 0 SHNi-TPR MCPsignal PF00015.21 gi|284163602|ref|YP_003401881.1| - 5.5e-27 94.7 59.0 1.1e-26 93.7 26.2 4.4 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|284163602|ref|YP_003401881.1| - 1.5e-10 41.3 22.5 5.1e-10 39.6 3.4 5.4 5 1 0 5 5 4 2 HAMP domain dCache_1 PF02743.18 gi|284163602|ref|YP_003401881.1| - 4.4e-10 39.8 0.0 4.4e-10 39.8 0.0 4.0 2 1 3 5 5 5 1 Cache domain DUF1664 PF07889.12 gi|284163602|ref|YP_003401881.1| - 0.00044 20.3 26.8 0.026 14.6 2.3 5.2 3 2 2 5 5 5 2 Protein of unknown function (DUF1664) PilJ PF13675.6 gi|284163602|ref|YP_003401881.1| - 0.0011 18.9 0.2 0.0011 18.9 0.2 5.5 1 1 3 5 5 4 1 Type IV pili methyl-accepting chemotaxis transducer N-term DUF948 PF06103.11 gi|284163602|ref|YP_003401881.1| - 0.0029 17.8 39.2 0.42 10.9 5.4 6.9 1 1 4 5 5 5 4 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 gi|284163602|ref|YP_003401881.1| - 0.084 11.8 23.2 0.1 11.5 5.9 2.8 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 SKA1 PF07160.12 gi|284163602|ref|YP_003401881.1| - 0.15 11.9 21.0 0.81 9.5 6.0 3.3 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 1 MAD PF05557.13 gi|284163602|ref|YP_003401881.1| - 0.22 9.8 31.9 0.17 10.2 10.0 2.6 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF1759 PF03564.15 gi|284163602|ref|YP_003401881.1| - 0.45 10.4 6.4 5.9 6.8 1.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1759) DUF3584 PF12128.8 gi|284163602|ref|YP_003401881.1| - 0.48 7.9 49.8 0.047 11.2 35.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) XTBD PF11952.8 gi|284163602|ref|YP_003401881.1| - 0.54 10.1 2.6 3.5 7.5 0.0 3.5 4 0 0 4 4 4 0 XRN-Two Binding Domain, XTBD GAS PF13851.6 gi|284163602|ref|YP_003401881.1| - 0.56 9.5 24.0 1.9 7.8 0.8 4.4 3 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding IL11 PF07400.11 gi|284163602|ref|YP_003401881.1| - 0.59 9.8 3.2 17 5.0 0.0 3.5 4 0 0 4 4 4 0 Interleukin 11 DUF2935 PF11155.8 gi|284163602|ref|YP_003401881.1| - 2 8.8 5.5 11 6.4 0.4 3.6 2 2 1 3 3 3 0 Domain of unknown function (DUF2935) UPF0242 PF06785.11 gi|284163602|ref|YP_003401881.1| - 4.4 7.4 20.8 1.8 8.7 0.1 4.2 2 1 2 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus BLOC1_2 PF10046.9 gi|284163602|ref|YP_003401881.1| - 4.6 7.6 23.3 0.57 10.5 1.4 5.3 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|284163602|ref|YP_003401881.1| - 6.4 7.0 17.0 7.2 6.8 2.9 4.5 2 1 3 5 5 5 0 Fibrinogen alpha/beta chain family DUF16 PF01519.16 gi|284163602|ref|YP_003401881.1| - 7.3 7.1 16.9 3 8.4 0.6 4.4 3 2 2 5 5 4 0 Protein of unknown function DUF16 Med9 PF07544.13 gi|284163602|ref|YP_003401881.1| - 8.4 6.6 8.2 9.1 6.4 0.0 4.2 4 1 0 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Laminin_II PF06009.12 gi|284163602|ref|YP_003401881.1| - 9.7 6.2 44.1 1.3 9.0 4.3 5.9 4 2 2 6 6 6 0 Laminin Domain II NPV_P10 PF05531.12 gi|284163602|ref|YP_003401881.1| - 9.7 6.7 25.9 9.7 6.7 2.0 5.5 1 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein DEAD PF00270.29 gi|284163603|ref|YP_003401882.1| - 3e-21 76.0 0.0 6e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|284163603|ref|YP_003401882.1| - 4.4e-15 56.0 0.0 1.1e-14 54.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|284163603|ref|YP_003401882.1| - 5.4e-10 39.5 0.0 8.9e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit 3HCDH_RFF PF18321.1 gi|284163604|ref|YP_003401883.1| - 0.0095 16.4 3.1 0.69 10.4 0.3 2.8 3 1 1 4 4 4 2 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DUF835 PF05763.12 gi|284163604|ref|YP_003401883.1| - 0.047 13.4 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) Kri1 PF05178.12 gi|284163604|ref|YP_003401883.1| - 0.2 12.2 0.2 0.33 11.5 0.2 1.4 1 0 0 1 1 1 0 KRI1-like family BofA PF07441.11 gi|284163605|ref|YP_003401884.1| - 1.9e-05 24.8 24.7 2.3e-05 24.5 24.7 1.1 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA SAPS PF04499.15 gi|284163606|ref|YP_003401885.1| - 1 8.1 12.2 1.2 7.8 12.2 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein AstE_AspA PF04952.14 gi|284163607|ref|YP_003401886.1| - 1.4e-13 50.6 0.0 2.5e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|284163607|ref|YP_003401886.1| - 0.00011 21.8 0.0 0.00016 21.2 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic Peptidase_M14 PF00246.24 gi|284163607|ref|YP_003401886.1| - 0.00064 19.6 0.2 0.15 11.8 0.0 2.2 2 0 0 2 2 2 2 Zinc carboxypeptidase DUF2119 PF09892.9 gi|284163607|ref|YP_003401886.1| - 0.032 13.6 0.0 0.16 11.3 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) DUF502 PF04367.13 gi|284163610|ref|YP_003401889.1| - 4.8e-25 87.5 0.1 4.8e-25 87.5 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF502) MCM PF00493.23 gi|284163611|ref|YP_003401890.1| - 2.4e-93 311.4 0.0 3.6e-93 310.8 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|284163611|ref|YP_003401890.1| - 1.9e-36 124.7 0.1 3.4e-36 123.9 0.1 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|284163611|ref|YP_003401890.1| - 6e-29 100.3 0.6 1.5e-28 99.0 0.6 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|284163611|ref|YP_003401890.1| - 1.7e-10 40.6 0.0 6.3e-06 25.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|284163611|ref|YP_003401890.1| - 1.5e-08 35.2 1.0 1.5e-08 35.2 1.0 2.9 2 1 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|284163611|ref|YP_003401890.1| - 5.7e-06 26.4 0.0 1.5e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|284163611|ref|YP_003401890.1| - 0.00039 20.2 0.1 0.0063 16.2 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|284163611|ref|YP_003401890.1| - 0.00063 20.2 1.7 0.0018 18.7 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284163611|ref|YP_003401890.1| - 0.0042 17.5 0.3 0.016 15.6 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284163611|ref|YP_003401890.1| - 0.013 15.2 0.5 0.036 13.8 0.5 1.7 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|284163611|ref|YP_003401890.1| - 0.044 13.6 0.0 0.17 11.7 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|284163611|ref|YP_003401890.1| - 0.069 13.4 0.1 0.59 10.4 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|284163611|ref|YP_003401890.1| - 0.096 12.2 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region T4_baseplate PF12322.8 gi|284163611|ref|YP_003401890.1| - 1.6 8.2 4.3 17 4.8 0.5 3.1 3 0 0 3 3 3 0 T4 bacteriophage base plate protein F_actin_bund_C PF18060.1 gi|284163611|ref|YP_003401890.1| - 2.3 8.4 5.4 6.2 7.0 0.4 2.7 2 0 0 2 2 2 0 F actin bundling C terminal TFIIB PF00382.19 gi|284163612|ref|YP_003401891.1| - 1.4e-24 85.9 0.1 1.4e-11 44.2 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|284163612|ref|YP_003401891.1| - 1.7e-10 40.2 2.7 2.8e-10 39.5 2.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|284163612|ref|YP_003401891.1| - 0.019 15.0 0.5 0.038 14.0 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon RB_B PF01857.20 gi|284163612|ref|YP_003401891.1| - 0.056 13.5 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zinc-ribbons_6 PF07191.12 gi|284163612|ref|YP_003401891.1| - 0.14 12.1 0.4 0.25 11.3 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons PALP PF00291.25 gi|284163614|ref|YP_003401893.1| - 5.5e-70 236.1 4.9 6.4e-70 235.9 4.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|284163614|ref|YP_003401893.1| - 0.058 13.7 0.1 0.092 13.1 0.1 1.3 1 0 0 1 1 1 0 C1 domain TrmB PF01978.19 gi|284163615|ref|YP_003401894.1| - 4.8e-12 45.6 0.0 7.3e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284163615|ref|YP_003401894.1| - 6.2e-08 32.4 0.6 9.6e-08 31.8 0.6 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284163615|ref|YP_003401894.1| - 1.4e-07 31.4 0.1 2.3e-07 30.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|284163615|ref|YP_003401894.1| - 3e-07 30.1 2.4 6e-07 29.2 0.6 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284163615|ref|YP_003401894.1| - 7.7e-07 29.5 0.6 0.00014 22.3 0.5 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|284163615|ref|YP_003401894.1| - 2.5e-05 23.7 0.1 4.4e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284163615|ref|YP_003401894.1| - 3e-05 23.8 0.0 5.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|284163615|ref|YP_003401894.1| - 3.5e-05 23.7 0.6 5.4e-05 23.1 0.6 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|284163615|ref|YP_003401894.1| - 0.00013 21.6 0.4 0.00029 20.4 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|284163615|ref|YP_003401894.1| - 0.00024 21.0 0.1 0.00039 20.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|284163615|ref|YP_003401894.1| - 0.00065 19.7 0.5 0.0014 18.7 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284163615|ref|YP_003401894.1| - 0.0026 17.9 0.0 0.064 13.5 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|284163615|ref|YP_003401894.1| - 0.017 15.5 0.0 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Rrf2 PF02082.20 gi|284163615|ref|YP_003401894.1| - 0.046 14.1 0.0 0.072 13.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF5605 PF18310.1 gi|284163615|ref|YP_003401894.1| - 0.061 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5605) HTH_36 PF13730.6 gi|284163615|ref|YP_003401894.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|284163615|ref|YP_003401894.1| - 0.19 11.6 0.0 0.51 10.3 0.0 1.7 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) YqhR PF11085.8 gi|284163617|ref|YP_003401896.1| - 0.072 13.0 6.7 0.12 12.3 6.7 1.4 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF1440 PF07274.12 gi|284163617|ref|YP_003401896.1| - 0.13 12.6 7.4 0.19 12.1 5.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) DUF2938 PF11158.8 gi|284163617|ref|YP_003401896.1| - 0.79 9.2 14.6 0.21 11.1 10.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2938) OTCace_N PF02729.21 gi|284163618|ref|YP_003401897.1| - 4.9e-53 179.1 0.0 8.7e-53 178.3 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|284163618|ref|YP_003401897.1| - 6.4e-50 169.3 0.0 8.9e-50 168.8 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.28 gi|284163619|ref|YP_003401898.1| - 1.4e-25 90.2 0.4 1.9e-25 89.8 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284163619|ref|YP_003401898.1| - 4.7e-05 23.3 0.0 7.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|284163619|ref|YP_003401898.1| - 0.0032 17.2 0.2 0.0085 15.8 0.2 1.7 1 1 0 1 1 1 1 Peptidase family M28 Aminotran_3 PF00202.21 gi|284163620|ref|YP_003401899.1| - 3.2e-100 335.7 0.0 4.4e-100 335.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|284163620|ref|YP_003401899.1| - 0.00044 19.5 0.0 0.00061 19.1 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284163620|ref|YP_003401899.1| - 0.0096 15.2 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase HTH_27 PF13463.6 gi|284163620|ref|YP_003401899.1| - 0.073 13.6 0.1 0.2 12.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain AA_kinase PF00696.28 gi|284163621|ref|YP_003401900.1| - 6.8e-33 114.3 3.9 8.5e-33 113.9 3.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family GCV_H PF01597.19 gi|284163621|ref|YP_003401900.1| - 0.22 11.4 1.2 0.46 10.4 0.1 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein Semialdhyde_dh PF01118.24 gi|284163622|ref|YP_003401901.1| - 4.5e-28 98.1 0.0 8.6e-28 97.2 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|284163622|ref|YP_003401901.1| - 2.1e-08 34.4 0.0 3.5e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RimK PF08443.11 gi|284163623|ref|YP_003401902.1| - 3.2e-25 88.9 0.0 4.3e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|284163623|ref|YP_003401902.1| - 5.9e-12 45.9 0.0 8.3e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|284163623|ref|YP_003401902.1| - 6.6e-07 29.1 0.3 1.3e-05 24.9 0.1 2.7 2 1 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|284163623|ref|YP_003401902.1| - 9.6e-07 28.4 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|284163623|ref|YP_003401902.1| - 3.4e-06 26.7 0.0 9.2e-06 25.3 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|284163623|ref|YP_003401902.1| - 5.7e-06 25.9 0.1 0.00025 20.6 0.1 2.6 1 1 1 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|284163623|ref|YP_003401902.1| - 1.7e-05 24.2 0.0 0.0028 17.0 0.0 2.5 3 0 0 3 3 3 2 Sugar-transfer associated ATP-grasp ATP-grasp_2 PF08442.10 gi|284163623|ref|YP_003401902.1| - 0.085 12.4 0.0 0.29 10.7 0.0 1.8 1 1 1 2 2 2 0 ATP-grasp domain Rimk_N PF18030.1 gi|284163623|ref|YP_003401902.1| - 0.093 13.1 0.0 0.28 11.6 0.0 1.9 1 1 0 1 1 1 0 RimK PreATP-grasp domain DNA_RNApol_7kD PF03604.13 gi|284163624|ref|YP_003401903.1| - 0.0014 18.2 1.8 0.0042 16.7 1.8 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|284163624|ref|YP_003401903.1| - 0.0037 16.9 0.5 2.3 8.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|284163624|ref|YP_003401903.1| - 0.0087 16.4 0.3 0.013 15.9 0.3 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar ADD_ATRX PF17981.1 gi|284163624|ref|YP_003401903.1| - 0.014 15.2 1.0 0.052 13.4 0.0 2.0 1 1 1 2 2 2 0 Cysteine Rich ADD domain PhnA_Zn_Ribbon PF08274.12 gi|284163624|ref|YP_003401903.1| - 0.015 15.3 1.3 0.061 13.3 1.4 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|284163624|ref|YP_003401903.1| - 0.019 14.3 0.2 0.91 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|284163624|ref|YP_003401903.1| - 0.026 14.5 0.8 0.28 11.3 0.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|284163624|ref|YP_003401903.1| - 0.035 14.1 0.3 0.036 14.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HYPF PF07503.12 gi|284163624|ref|YP_003401903.1| - 0.04 13.7 0.0 6.8 6.6 0.0 2.1 2 0 0 2 2 2 0 HypF finger TF_Zn_Ribbon PF08271.12 gi|284163624|ref|YP_003401903.1| - 0.042 13.4 3.6 0.057 12.9 3.6 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|284163624|ref|YP_003401903.1| - 0.064 13.4 2.4 0.22 11.7 2.3 1.8 1 1 1 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|284163624|ref|YP_003401903.1| - 0.07 13.0 1.5 0.38 10.7 1.5 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf_UBZ PF18439.1 gi|284163624|ref|YP_003401903.1| - 0.073 12.7 0.9 4.6 6.9 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|284163624|ref|YP_003401903.1| - 0.086 12.8 2.2 7.3 6.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein Desulfoferrod_N PF06397.12 gi|284163624|ref|YP_003401903.1| - 0.1 12.2 2.3 0.89 9.2 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF1451 PF07295.11 gi|284163624|ref|YP_003401903.1| - 0.12 12.4 0.9 0.15 12.1 0.9 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-C3HC PF07967.13 gi|284163624|ref|YP_003401903.1| - 0.27 11.3 1.2 2 8.5 0.1 2.0 1 1 1 2 2 2 0 C3HC zinc finger-like Prok-RING_1 PF14446.6 gi|284163624|ref|YP_003401903.1| - 0.65 10.0 4.9 1.2 9.2 4.9 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Eapp_C PF10238.9 gi|284163624|ref|YP_003401903.1| - 1.3 9.1 4.1 6.6 6.8 0.4 2.0 1 1 1 2 2 2 0 E2F-associated phosphoprotein Lyase_1 PF00206.20 gi|284163625|ref|YP_003401904.1| - 1e-52 179.5 1.2 5.2e-52 177.2 0.1 2.5 2 1 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|284163625|ref|YP_003401904.1| - 8.5e-18 64.9 1.5 8.5e-18 64.9 1.5 3.0 3 0 0 3 3 3 1 Argininosuccinate lyase C-terminal Phage_fiber_2 PF03406.13 gi|284163625|ref|YP_003401904.1| - 0.046 13.3 0.0 0.28 10.8 0.0 2.4 1 0 0 1 1 1 0 Phage tail fibre repeat Arginosuc_synth PF00764.19 gi|284163626|ref|YP_003401905.1| - 1.8e-140 468.6 0.0 2.1e-140 468.4 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|284163626|ref|YP_003401905.1| - 6.5e-05 22.5 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|284163626|ref|YP_003401905.1| - 0.0007 19.3 0.9 0.0044 16.7 0.0 2.1 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|284163626|ref|YP_003401905.1| - 0.0034 16.2 0.0 0.0062 15.4 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|284163626|ref|YP_003401905.1| - 0.033 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 NAD synthase Csm1_N PF18504.1 gi|284163627|ref|YP_003401906.1| - 0.14 12.5 0.0 0.34 11.3 0.0 1.6 1 0 0 1 1 1 0 Csm1 N-terminal domain Rod_cone_degen PF15201.6 gi|284163627|ref|YP_003401906.1| - 0.25 11.5 0.8 0.8 9.9 0.8 1.8 1 0 0 1 1 1 0 Progressive rod-cone degeneration DUF1129 PF06570.11 gi|284163628|ref|YP_003401907.1| - 0.086 12.3 1.4 0.087 12.3 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) BRI3BP PF14965.6 gi|284163628|ref|YP_003401907.1| - 0.11 12.0 6.4 0.12 11.9 6.4 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 2_5_RNA_ligase2 PF13563.6 gi|284163629|ref|YP_003401908.1| - 3.8e-16 59.4 0.0 4.7e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|284163629|ref|YP_003401908.1| - 2e-06 27.9 0.1 0.0059 16.8 0.0 2.5 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|284163629|ref|YP_003401908.1| - 0.0014 18.5 0.0 0.0017 18.3 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Helicase_C_2 PF13307.6 gi|284163630|ref|YP_003401909.1| - 8.1e-31 107.5 0.0 2.3e-30 106.0 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|284163630|ref|YP_003401909.1| - 8.2e-21 74.4 0.1 1.5e-20 73.6 0.1 1.4 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|284163630|ref|YP_003401909.1| - 3.6e-08 33.4 0.0 9.2e-05 22.3 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|284163630|ref|YP_003401909.1| - 3.8e-07 30.3 0.1 3.2e-05 24.0 0.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|284163630|ref|YP_003401909.1| - 0.00074 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 KaiC HBB PF06777.11 gi|284163630|ref|YP_003401909.1| - 0.0012 18.5 0.0 0.0033 17.1 0.0 1.8 1 0 0 1 1 1 1 Helical and beta-bridge domain AAA_34 PF13872.6 gi|284163630|ref|YP_003401909.1| - 0.019 13.8 0.0 0.037 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 PhoH PF02562.16 gi|284163630|ref|YP_003401909.1| - 0.034 13.6 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Asparaginase_C PF17763.1 gi|284163630|ref|YP_003401909.1| - 0.12 12.6 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain AAA_25 PF13481.6 gi|284163630|ref|YP_003401909.1| - 0.21 11.1 5.1 3.4 7.2 0.0 4.2 3 1 1 5 5 5 0 AAA domain Sugarporin_N PF11471.8 gi|284163630|ref|YP_003401909.1| - 0.25 11.3 1.8 0.55 10.2 1.8 1.5 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension AAA_16 PF13191.6 gi|284163630|ref|YP_003401909.1| - 2.2 8.6 6.4 2.7 8.3 2.9 2.6 2 1 0 2 2 2 0 AAA ATPase domain Cation_efflux PF01545.21 gi|284163632|ref|YP_003401911.1| - 8.9e-29 100.6 4.1 1.4e-28 100.0 4.1 1.3 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|284163632|ref|YP_003401911.1| - 4.1e-06 26.8 0.0 7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Metal_resist PF13801.6 gi|284163632|ref|YP_003401911.1| - 0.0041 17.3 0.6 0.08 13.1 0.0 3.0 3 0 0 3 3 3 1 Heavy-metal resistance PKcGMP_CC PF16808.5 gi|284163632|ref|YP_003401911.1| - 0.097 12.5 1.0 0.19 11.6 1.0 1.4 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Phage_holin_3_6 PF07332.11 gi|284163632|ref|YP_003401911.1| - 0.44 10.6 4.2 0.87 9.6 0.2 2.8 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Metallophos_2 PF12850.7 gi|284163633|ref|YP_003401912.1| - 1.6e-28 99.9 0.2 1.9e-28 99.7 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284163633|ref|YP_003401912.1| - 6.2e-06 26.8 0.2 0.011 16.2 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase XhlA PF10779.9 gi|284163634|ref|YP_003401913.1| - 9.5e-05 22.5 5.6 0.018 15.2 0.1 2.6 2 1 1 3 3 2 2 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|284163634|ref|YP_003401913.1| - 0.00012 22.3 9.2 0.0082 16.4 0.4 3.7 2 1 2 4 4 4 2 ABC transporter C-terminal domain Lebercilin PF15619.6 gi|284163634|ref|YP_003401913.1| - 0.00019 21.2 0.9 0.00026 20.7 0.9 1.2 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease NPV_P10 PF05531.12 gi|284163634|ref|YP_003401913.1| - 0.00021 21.7 1.9 0.035 14.6 0.0 2.4 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein ADIP PF11559.8 gi|284163634|ref|YP_003401913.1| - 0.0004 20.5 4.1 0.073 13.2 0.6 2.3 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding PspA_IM30 PF04012.12 gi|284163634|ref|YP_003401913.1| - 0.0013 18.4 2.1 0.0025 17.5 2.1 1.6 1 0 0 1 1 1 1 PspA/IM30 family MutS_III PF05192.18 gi|284163634|ref|YP_003401913.1| - 0.0042 17.3 0.2 0.0048 17.2 0.2 1.1 1 0 0 1 1 1 1 MutS domain III CENP-F_leu_zip PF10473.9 gi|284163634|ref|YP_003401913.1| - 0.0073 16.3 4.3 0.26 11.3 0.7 2.2 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lzipper-MIP1 PF14389.6 gi|284163634|ref|YP_003401913.1| - 0.0083 16.4 1.6 0.017 15.4 1.6 1.5 1 0 0 1 1 1 1 Leucine-zipper of ternary complex factor MIP1 FPP PF05911.11 gi|284163634|ref|YP_003401913.1| - 0.0091 14.2 1.2 0.013 13.7 1.2 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Golgin_A5 PF09787.9 gi|284163634|ref|YP_003401913.1| - 0.0099 15.4 0.4 0.014 14.9 0.4 1.2 1 0 0 1 1 1 1 Golgin subfamily A member 5 FlaC_arch PF05377.11 gi|284163634|ref|YP_003401913.1| - 0.01 16.2 2.1 7 7.1 0.1 2.9 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) DASH_Spc19 PF08287.11 gi|284163634|ref|YP_003401913.1| - 0.011 15.6 4.7 0.14 12.1 1.1 2.3 1 1 1 2 2 2 0 Spc19 Spectrin PF00435.21 gi|284163634|ref|YP_003401913.1| - 0.014 15.8 2.2 0.063 13.8 2.2 2.0 1 1 0 1 1 1 0 Spectrin repeat Prefoldin PF02996.17 gi|284163634|ref|YP_003401913.1| - 0.021 14.8 1.5 1.5 8.7 0.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit YkyA PF10368.9 gi|284163634|ref|YP_003401913.1| - 0.021 14.5 0.2 0.03 14.0 0.2 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein Prefoldin_2 PF01920.20 gi|284163634|ref|YP_003401913.1| - 0.026 14.5 5.1 0.68 9.9 0.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit TMF_DNA_bd PF12329.8 gi|284163634|ref|YP_003401913.1| - 0.026 14.5 2.3 1.3 9.1 0.2 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DASH_Dad2 PF08654.10 gi|284163634|ref|YP_003401913.1| - 0.031 14.7 0.8 0.25 11.8 0.8 2.1 1 1 1 2 2 2 0 DASH complex subunit Dad2 DUF3450 PF11932.8 gi|284163634|ref|YP_003401913.1| - 0.032 13.5 2.5 0.11 11.8 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Fez1 PF06818.15 gi|284163634|ref|YP_003401913.1| - 0.034 14.6 0.3 0.038 14.5 0.3 1.2 1 0 0 1 1 1 0 Fez1 DUF4795 PF16043.5 gi|284163634|ref|YP_003401913.1| - 0.034 13.7 0.5 0.059 13.0 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) CLZ PF16526.5 gi|284163634|ref|YP_003401913.1| - 0.037 14.4 7.2 1.4 9.3 1.8 2.7 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1664 PF07889.12 gi|284163634|ref|YP_003401913.1| - 0.041 13.9 1.7 0.14 12.2 0.9 2.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF16 PF01519.16 gi|284163634|ref|YP_003401913.1| - 0.043 14.3 0.5 0.074 13.5 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 Spc7 PF08317.11 gi|284163634|ref|YP_003401913.1| - 0.043 12.7 0.7 0.062 12.2 0.7 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4140 PF13600.6 gi|284163634|ref|YP_003401913.1| - 0.044 14.2 10.7 0.41 11.1 0.7 3.0 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF4201 PF13870.6 gi|284163634|ref|YP_003401913.1| - 0.046 13.4 0.1 0.075 12.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) KASH_CCD PF14662.6 gi|284163634|ref|YP_003401913.1| - 0.051 13.4 1.6 0.074 12.9 1.6 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH SHE3 PF17078.5 gi|284163634|ref|YP_003401913.1| - 0.054 13.2 0.4 0.079 12.7 0.4 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 DHR10 PF18595.1 gi|284163634|ref|YP_003401913.1| - 0.054 13.5 5.7 0.11 12.6 5.7 1.4 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain SlyX PF04102.12 gi|284163634|ref|YP_003401913.1| - 0.059 14.0 6.0 1.9 9.1 2.0 2.9 1 1 1 2 2 2 0 SlyX BLOC1_2 PF10046.9 gi|284163634|ref|YP_003401913.1| - 0.07 13.4 4.2 0.074 13.4 1.8 2.2 2 1 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.19 gi|284163634|ref|YP_003401913.1| - 0.082 10.8 0.1 0.1 10.5 0.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Dynactin_p22 PF07426.11 gi|284163634|ref|YP_003401913.1| - 0.085 12.7 1.7 0.18 11.6 1.2 1.7 1 1 1 2 2 2 0 Dynactin subunit p22 Laminin_II PF06009.12 gi|284163634|ref|YP_003401913.1| - 0.086 12.9 1.4 0.14 12.1 1.4 1.4 1 0 0 1 1 1 0 Laminin Domain II DUF4559 PF15112.6 gi|284163634|ref|YP_003401913.1| - 0.097 12.3 0.5 0.13 11.9 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) HSBP1 PF06825.12 gi|284163634|ref|YP_003401913.1| - 0.11 12.3 3.0 3.3 7.6 0.7 2.7 1 1 1 2 2 2 0 Heat shock factor binding protein 1 Erythro-docking PF09277.11 gi|284163634|ref|YP_003401913.1| - 0.12 12.3 7.5 0.31 11.0 0.2 3.0 3 0 0 3 3 2 0 Erythronolide synthase, docking Fmp27_WPPW PF10359.9 gi|284163634|ref|YP_003401913.1| - 0.13 11.1 0.4 0.17 10.7 0.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.15 gi|284163634|ref|YP_003401913.1| - 0.13 12.0 4.0 1.4 8.7 1.0 2.3 1 1 1 2 2 2 0 Septum formation initiator Phage_GP20 PF06810.11 gi|284163634|ref|YP_003401913.1| - 0.15 11.8 2.4 0.44 10.4 2.0 1.7 1 1 0 1 1 1 0 Phage minor structural protein GP20 DUF5082 PF16888.5 gi|284163634|ref|YP_003401913.1| - 0.21 11.9 1.3 6.1 7.1 0.2 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF5082) DASH_Dad4 PF08650.10 gi|284163634|ref|YP_003401913.1| - 0.22 11.5 0.1 9.7 6.2 0.0 2.4 1 1 0 2 2 2 0 DASH complex subunit Dad4 FUSC PF04632.12 gi|284163634|ref|YP_003401913.1| - 0.25 9.8 3.8 0.34 9.4 3.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4988 PF16378.5 gi|284163634|ref|YP_003401913.1| - 0.26 10.9 1.6 33 4.1 0.1 2.8 1 1 2 3 3 3 0 Domain of unknown function TRAF_BIRC3_bd PF16673.5 gi|284163634|ref|YP_003401913.1| - 0.27 11.0 3.9 3 7.7 2.4 3.0 2 1 1 3 3 3 0 TNF receptor-associated factor BIRC3 binding domain CENP-Q PF13094.6 gi|284163634|ref|YP_003401913.1| - 0.3 11.3 8.3 1.2 9.4 0.7 2.6 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Baculo_PEP_C PF04513.12 gi|284163634|ref|YP_003401913.1| - 0.34 10.9 2.0 0.79 9.8 2.0 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus EMP24_GP25L PF01105.24 gi|284163634|ref|YP_003401913.1| - 0.42 10.5 2.2 6.3 6.7 0.4 2.2 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD CCDC-167 PF15188.6 gi|284163634|ref|YP_003401913.1| - 0.43 10.9 6.5 7 7.1 0.2 2.7 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 CorA PF01544.18 gi|284163634|ref|YP_003401913.1| - 0.47 9.7 4.7 0.72 9.1 4.7 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TSC22 PF01166.18 gi|284163634|ref|YP_003401913.1| - 0.48 10.8 2.5 9.8 6.6 0.1 2.4 2 0 0 2 2 2 0 TSC-22/dip/bun family Tropomyosin_1 PF12718.7 gi|284163634|ref|YP_003401913.1| - 0.5 10.5 6.1 1.8 8.7 6.1 1.9 1 1 0 1 1 1 0 Tropomyosin like Seryl_tRNA_N PF02403.22 gi|284163634|ref|YP_003401913.1| - 0.64 10.3 3.4 27 5.1 4.0 2.7 2 1 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain PspB PF06667.12 gi|284163634|ref|YP_003401913.1| - 0.67 10.0 8.1 1.8 8.6 0.6 2.8 1 1 0 2 2 2 0 Phage shock protein B DUF948 PF06103.11 gi|284163634|ref|YP_003401913.1| - 0.83 10.0 3.2 5.5 7.3 3.2 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4164 PF13747.6 gi|284163634|ref|YP_003401913.1| - 0.88 9.9 12.9 4.1 7.7 1.2 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) ATG16 PF08614.11 gi|284163634|ref|YP_003401913.1| - 1.3 9.2 10.1 4.4 7.5 8.0 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Cep57_CLD_2 PF14197.6 gi|284163634|ref|YP_003401913.1| - 2.7 8.1 10.8 0.76 9.9 6.5 2.3 2 1 0 2 2 1 0 Centrosome localisation domain of PPC89 APG6_N PF17675.1 gi|284163634|ref|YP_003401913.1| - 2.9 8.4 6.9 12 6.4 6.9 2.0 1 1 0 1 1 1 0 Apg6 coiled-coil region Spc24 PF08286.11 gi|284163634|ref|YP_003401913.1| - 4 7.7 5.1 19 5.5 1.8 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 T3SSipB PF16535.5 gi|284163634|ref|YP_003401913.1| - 5.7 7.4 7.7 0.41 11.1 1.1 2.1 2 0 0 2 2 2 0 Type III cell invasion protein SipB MRF_C1 PF13887.6 gi|284163634|ref|YP_003401913.1| - 6.4 6.0 6.4 4.2 6.6 0.1 2.8 3 0 0 3 3 2 0 Myelin gene regulatory factor -C-terminal domain 1 Trimer_CC PF08954.11 gi|284163634|ref|YP_003401913.1| - 9.7 5.8 10.0 4.4 7.0 0.2 3.2 3 0 0 3 3 2 0 Trimerisation motif DUF87 PF01935.17 gi|284163635|ref|YP_003401914.1| - 3.8e-07 30.5 0.0 3.2e-06 27.4 0.0 2.1 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|284163635|ref|YP_003401914.1| - 0.0087 14.7 0.0 2 6.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.6 gi|284163635|ref|YP_003401914.1| - 0.019 15.4 0.3 0.076 13.4 0.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|284163635|ref|YP_003401914.1| - 0.07 13.6 0.0 4.7 7.7 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284163635|ref|YP_003401914.1| - 0.09 12.5 1.0 0.81 9.4 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|284163635|ref|YP_003401914.1| - 0.097 12.9 0.0 6 7.1 0.0 2.7 3 1 0 3 3 3 0 AAA domain RcpC PF16976.5 gi|284163636|ref|YP_003401915.1| - 0.03 14.4 0.7 1 9.4 0.7 2.6 1 1 0 1 1 1 0 Flp pilus assembly protein RcpC/CpaB DUF3159 PF11361.8 gi|284163636|ref|YP_003401915.1| - 0.2 11.4 6.2 0.33 10.7 6.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) DUF4131 PF13567.6 gi|284163636|ref|YP_003401915.1| - 0.65 9.6 4.6 0.58 9.8 1.5 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Phage_holin_3_6 PF07332.11 gi|284163636|ref|YP_003401915.1| - 2.7 8.1 11.6 0.4 10.7 2.5 2.3 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III TrkA_C PF02080.21 gi|284163637|ref|YP_003401916.1| - 3.8e-06 26.6 0.0 3.8e-05 23.4 0.0 2.5 3 0 0 3 3 3 1 TrkA-C domain ThiS PF02597.20 gi|284163637|ref|YP_003401916.1| - 0.12 13.0 0.0 11 6.8 0.0 2.6 2 0 0 2 2 2 0 ThiS family DUF4131 PF13567.6 gi|284163637|ref|YP_003401916.1| - 0.14 11.8 2.2 2.7 7.6 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_M29 PF02073.15 gi|284163638|ref|YP_003401917.1| - 3.9e-14 52.3 0.1 6.7e-12 44.9 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) LOR PF04525.12 gi|284163639|ref|YP_003401918.1| - 1.8e-07 30.9 0.0 2.2e-05 24.2 0.1 2.9 1 1 2 3 3 3 3 LURP-one-related DraK_HK_N PF18092.1 gi|284163640|ref|YP_003401919.1| - 0.0087 16.5 8.1 0.48 10.9 0.8 2.7 3 0 0 3 3 3 2 DraK Histidine Kinase N-terminal domain zinc_ribbon_4 PF13717.6 gi|284163640|ref|YP_003401919.1| - 0.3 11.0 2.9 1.4 8.9 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-CSL PF05207.13 gi|284163640|ref|YP_003401919.1| - 6.2 6.6 6.4 9.3 6.1 3.5 2.7 2 1 0 2 2 2 0 CSL zinc finger PCMT PF01135.19 gi|284163641|ref|YP_003401920.1| - 5.8e-61 205.9 0.0 6.5e-61 205.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|284163641|ref|YP_003401920.1| - 2e-07 30.9 0.0 2.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284163641|ref|YP_003401920.1| - 2.9e-07 31.1 0.0 6e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|284163641|ref|YP_003401920.1| - 0.00034 20.0 0.0 0.00066 19.1 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|284163641|ref|YP_003401920.1| - 0.0024 17.4 0.0 0.0037 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|284163641|ref|YP_003401920.1| - 0.018 15.8 0.0 0.027 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|284163641|ref|YP_003401920.1| - 0.018 14.8 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_23 PF13489.6 gi|284163641|ref|YP_003401920.1| - 0.044 13.6 0.0 0.09 12.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|284163641|ref|YP_003401920.1| - 0.074 14.1 0.2 0.17 13.0 0.2 1.7 1 1 0 1 1 1 0 Methyltransferase domain EF-1_beta_acid PF10587.9 gi|284163641|ref|YP_003401920.1| - 0.11 13.0 0.3 0.32 11.5 0.3 1.8 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region PCMT PF01135.19 gi|284163642|ref|YP_003401921.1| - 7.4e-35 120.6 0.0 1e-34 120.1 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|284163642|ref|YP_003401921.1| - 6.9e-07 29.2 0.0 8.7e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284163642|ref|YP_003401921.1| - 4.7e-06 27.2 0.0 1.1e-05 26.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284163642|ref|YP_003401921.1| - 1.5e-05 24.6 0.0 2.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|284163642|ref|YP_003401921.1| - 0.0005 20.8 0.0 0.00095 19.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|284163642|ref|YP_003401921.1| - 0.0018 17.5 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltr_RsmB-F PF01189.17 gi|284163642|ref|YP_003401921.1| - 0.0028 17.3 0.0 0.005 16.5 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|284163642|ref|YP_003401921.1| - 0.088 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) BAT PF15915.5 gi|284163643|ref|YP_003401922.1| - 7.8e-34 116.8 12.4 7.8e-34 116.8 12.4 2.6 2 1 1 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|284163643|ref|YP_003401922.1| - 2.3e-28 99.2 3.6 3.7e-16 59.7 0.3 2.6 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.24 gi|284163643|ref|YP_003401922.1| - 6.6e-24 84.2 0.0 1.6e-23 83.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.12 gi|284163643|ref|YP_003401922.1| - 1e-20 73.3 0.0 5.3e-20 71.0 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain GAF_3 PF13492.6 gi|284163643|ref|YP_003401922.1| - 3.7e-12 46.7 0.0 1.9e-05 25.0 0.0 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|284163643|ref|YP_003401922.1| - 4.1e-08 33.9 0.1 0.00029 21.5 0.0 2.5 2 0 0 2 2 2 2 GAF domain HTH_24 PF13412.6 gi|284163643|ref|YP_003401922.1| - 0.096 12.3 0.0 0.24 11.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding KxDL PF10241.9 gi|284163643|ref|YP_003401922.1| - 0.13 12.6 3.2 5 7.5 0.3 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein PDDEXK_5 PF11645.8 gi|284163644|ref|YP_003401923.1| - 9.9e-44 148.7 0.1 1.1e-43 148.5 0.1 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease RNA_pol_Rpb5_C PF01191.19 gi|284163645|ref|YP_003401924.1| - 1.2e-25 89.1 0.3 1.4e-25 89.0 0.3 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_1 PF04563.15 gi|284163646|ref|YP_003401925.1| - 1.6e-50 171.4 0.1 2e-50 171.1 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|284163646|ref|YP_003401925.1| - 8e-27 94.1 0.1 1.2e-26 93.5 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|284163646|ref|YP_003401925.1| - 2e-22 79.1 0.0 3.7e-22 78.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|284163647|ref|YP_003401926.1| - 4.5e-128 427.6 0.0 5.9e-128 427.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|284163647|ref|YP_003401926.1| - 2.5e-30 104.7 0.2 5.5e-30 103.6 0.2 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|284163647|ref|YP_003401926.1| - 6.5e-21 74.4 0.3 1.2e-20 73.5 0.3 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|284163647|ref|YP_003401926.1| - 2.7e-09 37.5 6.0 8.1e-09 35.9 6.0 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|284163647|ref|YP_003401926.1| - 0.0088 15.9 1.2 0.017 15.0 1.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|284163647|ref|YP_003401926.1| - 0.11 12.7 0.2 0.21 11.8 0.2 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|284163647|ref|YP_003401926.1| - 0.27 11.4 2.2 0.48 10.6 2.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb1_1 PF04997.12 gi|284163648|ref|YP_003401927.1| - 4.4e-112 374.5 0.0 7.6e-112 373.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|284163648|ref|YP_003401927.1| - 2.1e-68 229.7 0.2 3.6e-68 229.0 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|284163648|ref|YP_003401927.1| - 1.3e-31 108.8 0.1 3.2e-31 107.4 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|284163648|ref|YP_003401927.1| - 5.9e-27 94.5 0.0 1.1e-26 93.7 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|284163648|ref|YP_003401927.1| - 8.9e-27 94.2 0.0 1.7e-26 93.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.22 gi|284163648|ref|YP_003401927.1| - 0.031 14.3 0.0 0.1 12.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix IpaB_EvcA PF03278.13 gi|284163648|ref|YP_003401927.1| - 0.1 12.3 0.0 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 IpaB/EvcA family RNA_pol_Rpb1_5 PF04998.17 gi|284163649|ref|YP_003401928.1| - 8.1e-54 182.8 0.2 9.9e-54 182.5 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 SL4P PF17618.2 gi|284163649|ref|YP_003401928.1| - 0.16 12.1 0.1 0.61 10.2 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized Strongylid L4 protein KH_2 PF07650.17 gi|284163650|ref|YP_003401929.1| - 1.1e-11 44.4 0.0 6e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|284163650|ref|YP_003401929.1| - 4.1e-11 42.8 0.1 3.9e-10 39.7 0.0 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|284163650|ref|YP_003401929.1| - 1.7e-08 34.2 0.0 2.1e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 KH domain Aldedh PF00171.22 gi|284163651|ref|YP_003401930.1| - 2.1e-156 521.0 0.0 2.4e-156 520.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family V4R PF02830.18 gi|284163652|ref|YP_003401931.1| - 2.3e-07 30.7 0.0 4.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 V4R domain DUF2378 PF09536.10 gi|284163652|ref|YP_003401931.1| - 0.05 13.5 0.0 0.9 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2378) Ribosom_S12_S23 PF00164.25 gi|284163653|ref|YP_003401932.1| - 5.5e-50 167.8 0.4 6.8e-50 167.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|284163654|ref|YP_003401933.1| - 3.3e-36 124.2 2.6 4.1e-36 123.9 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e CHAT PF12770.7 gi|284163655|ref|YP_003401934.1| - 0.062 12.7 0.0 0.14 11.5 0.0 1.5 1 1 0 1 1 1 0 CHAT domain HalX PF08663.10 gi|284163656|ref|YP_003401935.1| - 9.5e-05 22.6 8.9 0.00029 21.1 8.9 1.9 1 0 0 1 1 1 1 HalX domain Alpha-E PF04168.12 gi|284163656|ref|YP_003401935.1| - 0.012 15.5 0.1 0.015 15.1 0.1 1.3 1 0 0 1 1 1 0 A predicted alpha-helical domain with a conserved ER motif. Response_reg PF00072.24 gi|284163656|ref|YP_003401935.1| - 0.03 14.5 0.0 0.058 13.6 0.0 1.5 1 0 0 1 1 1 0 Response regulator receiver domain CHAT PF12770.7 gi|284163657|ref|YP_003401936.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 CHAT domain TTC5_OB PF16669.5 gi|284163657|ref|YP_003401936.1| - 0.11 12.2 0.0 0.31 10.8 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat protein 5 OB fold domain NYN PF01936.18 gi|284163658|ref|YP_003401937.1| - 0.097 13.1 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 NYN domain GTP_EFTU PF00009.27 gi|284163660|ref|YP_003401939.1| - 7e-65 218.2 0.3 1.2e-64 217.4 0.3 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|284163660|ref|YP_003401939.1| - 2e-24 85.7 0.0 5.5e-24 84.3 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|284163660|ref|YP_003401939.1| - 8.3e-24 83.4 0.1 1.5e-22 79.4 0.0 2.8 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|284163660|ref|YP_003401939.1| - 7.4e-22 77.2 0.4 2.4e-21 75.6 0.4 2.0 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|284163660|ref|YP_003401939.1| - 7.8e-17 61.4 2.0 4.2e-16 59.1 0.9 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|284163660|ref|YP_003401939.1| - 3.3e-05 23.9 0.3 0.00024 21.1 0.1 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|284163660|ref|YP_003401939.1| - 0.048 13.5 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain RsgA_GTPase PF03193.16 gi|284163660|ref|YP_003401939.1| - 0.088 12.7 0.2 1.1 9.2 0.0 2.6 3 0 0 3 3 3 0 RsgA GTPase tRNA-synt_2b PF00587.25 gi|284163661|ref|YP_003401940.1| - 1.1e-28 100.5 0.0 3.9e-28 98.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|284163661|ref|YP_003401940.1| - 9.3e-28 96.6 8.5 1.7e-27 95.8 8.5 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain FlxA PF14282.6 gi|284163661|ref|YP_003401940.1| - 0.025 14.6 2.8 0.041 13.9 2.8 1.3 1 0 0 1 1 1 0 FlxA-like protein LUC7 PF03194.15 gi|284163661|ref|YP_003401940.1| - 0.026 14.2 0.9 0.037 13.7 0.9 1.2 1 0 0 1 1 1 0 LUC7 N_terminus FapA PF03961.13 gi|284163661|ref|YP_003401940.1| - 0.044 12.4 6.2 0.069 11.8 6.2 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A ZapB PF06005.12 gi|284163661|ref|YP_003401940.1| - 0.078 13.4 12.9 1 9.9 3.2 3.2 2 1 1 3 3 3 0 Cell division protein ZapB CENP-H PF05837.12 gi|284163661|ref|YP_003401940.1| - 0.18 12.2 4.9 0.33 11.4 4.9 1.4 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DraK_HK_N PF18092.1 gi|284163661|ref|YP_003401940.1| - 0.23 11.9 2.9 0.88 10.0 0.4 2.7 2 0 0 2 2 2 0 DraK Histidine Kinase N-terminal domain TipAS PF07739.13 gi|284163661|ref|YP_003401940.1| - 0.28 11.7 2.2 0.74 10.4 2.2 1.8 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain UPF0242 PF06785.11 gi|284163661|ref|YP_003401940.1| - 0.3 11.2 7.5 0.57 10.3 7.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus AAA_13 PF13166.6 gi|284163661|ref|YP_003401940.1| - 0.5 9.0 3.5 0.72 8.4 3.5 1.1 1 0 0 1 1 1 0 AAA domain CdvA PF18822.1 gi|284163661|ref|YP_003401940.1| - 0.67 9.8 9.3 0.41 10.5 6.3 2.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain Atg14 PF10186.9 gi|284163661|ref|YP_003401940.1| - 1.8 7.5 5.0 2.7 7.0 5.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|284163661|ref|YP_003401940.1| - 3.2 7.0 4.7 1.4 8.3 2.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) HlyD_2 PF12700.7 gi|284163661|ref|YP_003401940.1| - 6.8 5.3 6.2 9.4 4.8 6.2 1.1 1 0 0 1 1 1 0 HlyD family secretion protein V-SNARE PF05008.15 gi|284163661|ref|YP_003401940.1| - 7.7 7.0 8.4 29 5.1 0.1 3.0 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus bZIP_1 PF00170.21 gi|284163661|ref|YP_003401940.1| - 8.1 6.6 7.0 27 5.0 2.8 2.5 1 1 1 2 2 2 0 bZIP transcription factor Cnn_1N PF07989.11 gi|284163661|ref|YP_003401940.1| - 8.5 6.6 13.3 2 8.6 8.8 2.2 2 1 1 3 3 2 0 Centrosomin N-terminal motif 1 TrkA_C PF02080.21 gi|284163662|ref|YP_003401941.1| - 3.3e-21 74.9 1.2 7.4e-14 51.3 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|284163662|ref|YP_003401941.1| - 1.8e-19 70.0 10.7 4.2e-10 40.0 4.1 2.4 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|284163662|ref|YP_003401941.1| - 0.0068 15.7 3.7 0.38 10.1 1.3 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 PRONE PF03759.13 gi|284163662|ref|YP_003401941.1| - 0.03 13.2 0.0 0.09 11.6 0.0 1.7 2 0 0 2 2 2 0 PRONE (Plant-specific Rop nucleotide exchanger) CLZ PF16526.5 gi|284163662|ref|YP_003401941.1| - 0.038 14.3 1.0 4.9 7.6 0.0 2.4 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Vault PF01505.18 gi|284163662|ref|YP_003401941.1| - 0.045 13.9 0.0 9.5 6.5 0.0 2.6 2 0 0 2 2 2 0 Major Vault Protein repeat domain KfrA_N PF11740.8 gi|284163662|ref|YP_003401941.1| - 0.072 13.8 2.6 0.64 10.7 0.0 3.1 4 0 0 4 4 4 0 Plasmid replication region DNA-binding N-term DUF3285 PF11688.8 gi|284163663|ref|YP_003401942.1| - 0.03 14.2 0.1 0.038 13.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3285) adh_short PF00106.25 gi|284163664|ref|YP_003401943.1| - 4.3e-45 153.6 0.0 5.8e-45 153.2 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284163664|ref|YP_003401943.1| - 2.7e-33 115.5 0.3 3.6e-33 115.1 0.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284163664|ref|YP_003401943.1| - 1.4e-09 38.1 0.2 2.3e-09 37.4 0.2 1.3 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|284163664|ref|YP_003401943.1| - 0.031 13.4 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Dak1_2 PF13684.6 gi|284163664|ref|YP_003401943.1| - 0.053 12.6 0.0 5.2 6.0 0.0 2.2 1 1 1 2 2 2 0 Dihydroxyacetone kinase family ADH_zinc_N PF00107.26 gi|284163664|ref|YP_003401943.1| - 0.071 13.1 0.4 0.17 11.9 0.4 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Epimerase PF01370.21 gi|284163664|ref|YP_003401943.1| - 0.11 12.0 0.9 0.31 10.5 0.3 2.2 3 1 0 3 3 3 0 NAD dependent epimerase/dehydratase family DFP PF04127.15 gi|284163664|ref|YP_003401943.1| - 0.11 12.4 0.7 0.2 11.4 0.7 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF4235 PF14019.6 gi|284163664|ref|YP_003401943.1| - 0.31 11.2 3.1 2.8 8.1 0.7 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF4235) BNIP3 PF06553.12 gi|284163665|ref|YP_003401944.1| - 0.2 11.3 0.3 0.33 10.6 0.3 1.3 1 0 0 1 1 1 0 BNIP3 DUF1294 PF06961.13 gi|284163665|ref|YP_003401944.1| - 5.8 7.2 6.3 1 9.6 0.7 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1294) CRCB PF02537.15 gi|284163666|ref|YP_003401945.1| - 5.4e-22 77.9 7.7 6.5e-22 77.7 7.7 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) NapE PF06796.11 gi|284163666|ref|YP_003401945.1| - 0.22 11.1 0.5 0.22 11.1 0.5 2.3 3 0 0 3 3 3 0 Periplasmic nitrate reductase protein NapE CRCB PF02537.15 gi|284163667|ref|YP_003401946.1| - 1.4e-12 47.7 9.9 1.9e-12 47.3 9.9 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Cation_efflux PF01545.21 gi|284163668|ref|YP_003401947.1| - 6.1e-44 150.2 6.6 7.1e-44 149.9 6.6 1.0 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|284163668|ref|YP_003401947.1| - 6.8e-16 58.2 1.5 6.8e-16 58.2 1.5 1.7 2 0 0 2 2 2 1 Dimerisation domain of Zinc Transporter ASL_C2 PF14698.6 gi|284163668|ref|YP_003401947.1| - 0.11 13.2 0.0 0.31 11.8 0.0 1.7 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal Na_H_antiport_2 PF13726.6 gi|284163668|ref|YP_003401947.1| - 0.12 12.5 3.3 0.11 12.6 1.4 2.0 1 1 0 1 1 1 0 Na+-H+ antiporter family HATPase_c PF02518.26 gi|284163669|ref|YP_003401948.1| - 2.4e-14 53.8 0.0 6.1e-14 52.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|284163669|ref|YP_003401948.1| - 6.8e-10 38.8 5.3 1.3e-09 37.8 5.3 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|284163669|ref|YP_003401948.1| - 3.2e-07 30.4 0.1 6.8e-07 29.3 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|284163669|ref|YP_003401948.1| - 5e-07 29.5 0.0 8.8e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|284163669|ref|YP_003401948.1| - 0.041 13.9 1.0 0.041 13.9 1.0 1.9 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|284163669|ref|YP_003401948.1| - 0.16 11.7 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF4536 PF15055.6 gi|284163669|ref|YP_003401948.1| - 6.8 7.0 8.3 0.65 10.3 0.9 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) Lactamase_B PF00753.27 gi|284163670|ref|YP_003401949.1| - 1.8e-24 86.9 7.7 2.7e-24 86.3 7.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284163670|ref|YP_003401949.1| - 2.1e-06 27.4 0.8 5.7e-06 26.0 0.8 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 gi|284163671|ref|YP_003401950.1| - 1.4e-93 313.8 0.0 1.7e-93 313.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284163671|ref|YP_003401950.1| - 0.11 13.5 1.7 0.4 11.7 1.7 2.0 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain Na_H_Exchanger PF00999.21 gi|284163672|ref|YP_003401951.1| - 1.6e-34 119.4 42.3 1.9e-34 119.1 42.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|284163672|ref|YP_003401951.1| - 9.3e-32 109.7 3.6 1e-31 109.6 1.7 2.1 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.21 gi|284163672|ref|YP_003401951.1| - 9.1e-11 41.4 3.1 1.6e-10 40.7 0.7 2.4 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|284163672|ref|YP_003401951.1| - 4.8e-08 33.4 0.2 1.3e-07 32.0 0.2 1.7 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|284163672|ref|YP_003401951.1| - 1.2e-05 25.6 0.2 4.8e-05 23.6 0.2 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|284163672|ref|YP_003401951.1| - 1.8e-05 25.2 2.6 0.0012 19.3 0.5 2.8 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|284163672|ref|YP_003401951.1| - 0.00038 19.8 0.1 0.00052 19.4 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|284163672|ref|YP_003401951.1| - 0.00098 18.8 2.2 0.0039 16.8 0.1 3.0 4 0 0 4 4 4 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|284163672|ref|YP_003401951.1| - 0.0074 15.9 1.4 0.013 15.1 0.7 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|284163672|ref|YP_003401951.1| - 0.0088 15.4 1.2 0.032 13.5 0.5 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|284163672|ref|YP_003401951.1| - 0.017 14.6 0.1 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox PF00070.27 gi|284163672|ref|YP_003401951.1| - 0.021 15.4 0.3 0.073 13.6 0.3 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|284163672|ref|YP_003401951.1| - 0.024 14.0 0.7 0.045 13.1 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|284163672|ref|YP_003401951.1| - 0.026 13.8 0.5 0.055 12.7 0.1 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.9 gi|284163672|ref|YP_003401951.1| - 0.033 14.1 0.2 0.11 12.3 0.2 1.9 1 0 0 1 1 1 0 Rossmann-like domain CbiJ PF02571.14 gi|284163672|ref|YP_003401951.1| - 0.047 13.2 0.4 0.087 12.3 0.3 1.5 1 1 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK AdoHcyase_NAD PF00670.21 gi|284163672|ref|YP_003401951.1| - 0.064 13.3 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|284163672|ref|YP_003401951.1| - 0.091 12.3 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|284163672|ref|YP_003401951.1| - 0.1 12.6 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DMT_6 PF04342.12 gi|284163672|ref|YP_003401951.1| - 1.5 9.1 5.9 0.68 10.2 0.2 2.7 3 0 0 3 3 2 0 Putative member of DMT superfamily (DUF486) MgtE PF01769.16 gi|284163673|ref|YP_003401952.1| - 9.3e-23 81.0 12.1 1.6e-22 80.2 10.6 1.8 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|284163674|ref|YP_003401953.1| - 2.9e-21 76.1 4.7 2.9e-21 76.1 4.7 1.6 2 0 0 2 2 2 1 Divalent cation transporter Yip1 PF04893.17 gi|284163674|ref|YP_003401953.1| - 0.0063 16.3 16.5 0.02 14.6 16.5 1.7 1 1 0 1 1 1 1 Yip1 domain DUF2270 PF10028.9 gi|284163675|ref|YP_003401954.1| - 9.2e-74 247.0 6.1 1.1e-73 246.8 6.1 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) 7TM_GPCR_Str PF10326.9 gi|284163675|ref|YP_003401954.1| - 0.046 13.1 0.1 0.081 12.3 0.1 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Str MASE3 PF17159.4 gi|284163675|ref|YP_003401954.1| - 2.7 7.6 8.0 2.9 7.5 0.5 2.1 2 0 0 2 2 2 0 Membrane-associated sensor domain DUF485 PF04341.12 gi|284163675|ref|YP_003401954.1| - 3.4 7.7 8.9 0.22 11.5 1.7 2.4 2 1 0 2 2 2 0 Protein of unknown function, DUF485 FixQ PF05545.11 gi|284163675|ref|YP_003401954.1| - 5.2 7.1 9.4 18 5.4 0.6 4.0 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ DUF4177 PF13783.6 gi|284163676|ref|YP_003401955.1| - 1.1e-06 28.9 0.1 1.6e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF1440 PF07274.12 gi|284163676|ref|YP_003401955.1| - 0.25 11.7 0.0 0.28 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) LigB PF02900.18 gi|284163678|ref|YP_003401957.1| - 0.11 11.5 0.0 0.12 11.5 0.0 1.1 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ferritin_2 PF13668.6 gi|284163679|ref|YP_003401958.1| - 1.3e-40 138.7 0.1 2.4e-40 137.9 0.1 1.4 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|284163679|ref|YP_003401958.1| - 0.041 14.3 0.3 37 4.7 0.0 3.0 3 0 0 3 3 3 0 Rubrerythrin DUF2391 PF09622.10 gi|284163680|ref|YP_003401959.1| - 1.8e-05 24.2 0.9 2.7e-05 23.7 0.9 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) MLTR_LBD PF17765.1 gi|284163680|ref|YP_003401959.1| - 0.061 13.4 0.2 0.1 12.7 0.2 1.4 1 0 0 1 1 1 0 MmyB-like transcription regulator ligand binding domain Sensor_TM1 PF13755.6 gi|284163680|ref|YP_003401959.1| - 0.083 12.6 0.2 0.15 11.8 0.2 1.4 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain AFOR_C PF01314.18 gi|284163681|ref|YP_003401960.1| - 5.7e-75 252.7 0.1 9.7e-75 251.9 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284163681|ref|YP_003401960.1| - 9.5e-63 211.6 0.0 1.5e-62 211.0 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PLDc_N PF13396.6 gi|284163682|ref|YP_003401961.1| - 0.02 14.8 2.6 0.049 13.6 2.6 1.6 1 0 0 1 1 1 0 Phospholipase_D-nuclease N-terminal Thiolase_N PF00108.23 gi|284163683|ref|YP_003401962.1| - 8e-76 254.8 0.8 1.4e-75 254.0 0.8 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284163683|ref|YP_003401962.1| - 1.8e-42 143.9 0.1 4.1e-42 142.7 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284163683|ref|YP_003401962.1| - 0.00029 20.5 1.9 0.0005 19.7 1.4 1.6 1 1 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain DUF2802 PF10975.8 gi|284163683|ref|YP_003401962.1| - 0.04 14.0 0.7 0.71 10.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) HTH_7 PF02796.15 gi|284163683|ref|YP_003401962.1| - 0.086 12.9 0.0 0.33 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase AFOR_C PF01314.18 gi|284163684|ref|YP_003401963.1| - 0.031 13.3 0.1 0.038 13.0 0.1 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Polysacc_lyase PF14099.6 gi|284163685|ref|YP_003401964.1| - 0.083 12.7 0.3 5.8 6.7 0.2 2.2 2 0 0 2 2 2 0 Polysaccharide lyase TAT_signal PF10518.9 gi|284163685|ref|YP_003401964.1| - 0.092 12.6 3.1 0.18 11.7 3.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DeoC PF01791.9 gi|284163686|ref|YP_003401965.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.5 1 1 0 1 1 1 0 DeoC/LacD family aldolase Peptidase_M23 PF01551.22 gi|284163688|ref|YP_003401967.1| - 0.00084 19.5 0.0 0.002 18.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 OB_aCoA_assoc PF01796.17 gi|284163688|ref|YP_003401967.1| - 0.12 12.4 3.6 9.2 6.4 0.1 3.0 3 0 0 3 3 3 0 DUF35 OB-fold domain, acyl-CoA-associated Serpin PF00079.20 gi|284163689|ref|YP_003401968.1| - 2.5e-106 356.1 0.0 2.8e-106 355.9 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) DUF4385 PF14328.6 gi|284163690|ref|YP_003401969.1| - 5e-60 201.8 8.2 6.3e-60 201.5 8.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4385) 4HBT PF03061.22 gi|284163691|ref|YP_003401970.1| - 1.4e-13 51.0 0.1 3.2e-13 49.8 0.1 1.6 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.6 gi|284163691|ref|YP_003401970.1| - 6.2e-07 29.6 0.0 8.6e-07 29.2 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|284163691|ref|YP_003401970.1| - 0.0094 16.2 0.0 0.012 15.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Isochorismatase PF00857.20 gi|284163693|ref|YP_003401972.1| - 5.2e-50 170.0 0.1 5.7e-50 169.9 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family Arm-DNA-bind_3 PF13356.6 gi|284163694|ref|YP_003401973.1| - 0.11 12.9 2.6 5.8 7.4 0.1 2.6 2 0 0 2 2 2 0 Arm DNA-binding domain Peptidase_M76 PF09768.9 gi|284163695|ref|YP_003401974.1| - 0.0022 17.8 0.0 0.0042 16.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase M76 family DUF3920 PF13058.6 gi|284163695|ref|YP_003401974.1| - 0.067 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3920) BSP PF04450.12 gi|284163695|ref|YP_003401974.1| - 0.09 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria LPAM_1 PF08139.12 gi|284163695|ref|YP_003401974.1| - 0.24 12.0 0.9 0.44 11.1 0.9 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site QRPTase_C PF01729.19 gi|284163696|ref|YP_003401975.1| - 8.8e-17 61.4 0.0 1.2e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|284163696|ref|YP_003401975.1| - 0.011 15.8 0.0 0.031 14.3 0.0 1.7 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|284163696|ref|YP_003401975.1| - 0.18 12.2 0.0 0.49 10.8 0.0 1.7 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Peptidase_M48 PF01435.18 gi|284163697|ref|YP_003401976.1| - 2.9e-23 82.7 0.2 3.3e-22 79.2 0.2 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|284163697|ref|YP_003401976.1| - 0.003 16.8 0.0 0.003 16.8 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|284163697|ref|YP_003401976.1| - 0.0046 16.8 0.2 0.012 15.4 0.1 1.7 1 1 1 2 2 2 1 SprT-like family DUF4157 PF13699.6 gi|284163697|ref|YP_003401976.1| - 0.073 13.3 2.7 0.15 12.3 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) DUF2614 PF11023.8 gi|284163697|ref|YP_003401976.1| - 7.6 6.7 5.6 3.5 7.7 3.2 1.6 2 0 0 2 2 2 0 Zinc-ribbon containing domain ABC2_membrane_2 PF12679.7 gi|284163698|ref|YP_003401977.1| - 1e-43 149.7 9.3 5.1e-43 147.4 9.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284163698|ref|YP_003401977.1| - 1.3e-07 31.7 12.7 1.3e-07 31.7 12.7 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284163698|ref|YP_003401977.1| - 5.6e-05 22.4 16.5 5.6e-05 22.4 16.5 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284163698|ref|YP_003401977.1| - 0.24 10.9 12.9 1.5 8.3 13.0 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|284163699|ref|YP_003401978.1| - 1.1e-23 84.2 0.0 1.7e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284163699|ref|YP_003401978.1| - 1.4e-14 54.6 0.1 2e-09 37.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284163699|ref|YP_003401978.1| - 1e-06 29.3 0.0 1.9e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|284163699|ref|YP_003401978.1| - 0.0061 17.1 0.1 0.01 16.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284163699|ref|YP_003401978.1| - 0.021 14.6 0.0 0.049 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284163699|ref|YP_003401978.1| - 0.1 12.0 0.0 12 5.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Sensor PF13796.6 gi|284163700|ref|YP_003401979.1| - 2.3e-35 122.0 17.9 3e-35 121.7 17.9 1.1 1 0 0 1 1 1 1 Putative sensor Neurensin PF14927.6 gi|284163700|ref|YP_003401979.1| - 4.9 6.9 8.4 1 9.1 3.1 2.2 2 1 0 2 2 2 0 Neurensin HTH_20 PF12840.7 gi|284163701|ref|YP_003401980.1| - 5.3e-05 23.2 0.3 8.1e-05 22.6 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284163701|ref|YP_003401980.1| - 0.00021 21.1 0.0 0.00032 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284163701|ref|YP_003401980.1| - 0.0021 17.9 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|284163701|ref|YP_003401980.1| - 0.0024 17.4 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|284163701|ref|YP_003401980.1| - 0.003 17.7 0.0 0.0053 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284163701|ref|YP_003401980.1| - 0.0048 16.7 0.0 0.0099 15.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain PadR PF03551.14 gi|284163701|ref|YP_003401980.1| - 0.0053 16.7 0.0 0.0092 15.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.6 gi|284163701|ref|YP_003401980.1| - 0.01 15.7 0.1 0.019 14.8 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|284163701|ref|YP_003401980.1| - 0.021 14.8 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|284163701|ref|YP_003401980.1| - 0.026 15.0 0.1 0.039 14.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|284163701|ref|YP_003401980.1| - 0.033 14.2 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|284163701|ref|YP_003401980.1| - 0.046 13.7 0.0 0.083 12.8 0.0 1.5 1 1 0 1 1 1 0 HTH domain RTP PF02334.16 gi|284163701|ref|YP_003401980.1| - 0.064 13.9 0.0 0.088 13.5 0.0 1.4 1 1 0 1 1 1 0 Replication terminator protein HTH_Crp_2 PF13545.6 gi|284163701|ref|YP_003401980.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ECF_trnsprt PF12822.7 gi|284163703|ref|YP_003401982.1| - 0.0025 17.9 0.9 0.0026 17.9 0.9 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component YesK PF14150.6 gi|284163703|ref|YP_003401982.1| - 0.023 14.9 0.1 0.037 14.2 0.1 1.3 1 0 0 1 1 1 0 YesK-like protein DUF3262 PF11660.8 gi|284163703|ref|YP_003401982.1| - 0.04 14.3 0.8 0.064 13.6 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3262) Jagunal PF07086.12 gi|284163703|ref|YP_003401982.1| - 0.066 13.3 0.1 0.087 12.9 0.1 1.2 1 0 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis 7tm_3 PF00003.22 gi|284163703|ref|YP_003401982.1| - 0.087 12.5 1.3 0.1 12.3 1.3 1.0 1 0 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF998 PF06197.13 gi|284163703|ref|YP_003401982.1| - 0.1 12.2 6.1 0.12 11.9 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF1772 PF08592.11 gi|284163703|ref|YP_003401982.1| - 0.16 12.2 3.8 0.14 12.5 2.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) PetG PF02529.15 gi|284163703|ref|YP_003401982.1| - 0.19 11.6 0.2 0.19 11.6 0.2 2.6 3 1 0 3 3 3 0 Cytochrome B6-F complex subunit 5 AMMECR1 PF01871.17 gi|284163704|ref|YP_003401983.1| - 8e-42 142.7 0.0 9.2e-42 142.5 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 PH_RBD PF12068.8 gi|284163705|ref|YP_003401984.1| - 0.047 13.2 0.1 0.047 13.2 0.1 2.6 3 0 0 3 3 3 0 Rab-binding domain (RBD) CARDB PF07705.11 gi|284163706|ref|YP_003401985.1| - 0.0047 17.2 0.1 0.0062 16.8 0.1 1.2 1 0 0 1 1 1 1 CARDB Fil_haemagg PF05594.14 gi|284163706|ref|YP_003401985.1| - 0.43 11.2 4.8 0.34 11.5 1.8 2.0 2 0 0 2 2 2 0 Haemagluttinin repeat HTH_20 PF12840.7 gi|284163707|ref|YP_003401986.1| - 1.4e-07 31.5 0.5 8.3e-07 29.0 0.2 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|284163707|ref|YP_003401986.1| - 2.8e-05 23.7 0.1 6.3e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|284163707|ref|YP_003401986.1| - 6.1e-05 22.9 0.5 0.00014 21.7 0.5 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|284163707|ref|YP_003401986.1| - 9.8e-05 21.8 0.3 0.00034 20.1 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284163707|ref|YP_003401986.1| - 0.00025 20.9 0.1 0.00067 19.5 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284163707|ref|YP_003401986.1| - 0.00033 20.5 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284163707|ref|YP_003401986.1| - 0.00053 19.7 1.6 0.0011 18.6 1.6 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284163707|ref|YP_003401986.1| - 0.0053 16.7 0.1 0.01 15.8 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|284163707|ref|YP_003401986.1| - 0.0071 16.1 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|284163707|ref|YP_003401986.1| - 0.0077 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|284163707|ref|YP_003401986.1| - 0.038 13.9 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284163707|ref|YP_003401986.1| - 0.07 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_41 PF14502.6 gi|284163707|ref|YP_003401986.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA_anti-codon PF01336.25 gi|284163709|ref|YP_003401988.1| - 5.7e-33 112.7 6.7 2.6e-13 49.7 0.2 3.6 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|284163709|ref|YP_003401988.1| - 2.5e-15 56.2 1.8 2e-06 27.7 0.1 3.3 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|284163709|ref|YP_003401988.1| - 2.2e-11 43.9 0.0 0.011 15.4 0.0 3.3 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 DUF4539 PF15072.6 gi|284163709|ref|YP_003401988.1| - 0.00065 19.7 0.2 0.044 13.8 0.0 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4539) POT1PC PF16686.5 gi|284163709|ref|YP_003401988.1| - 0.0012 18.7 0.0 1.6 8.6 0.0 2.6 2 0 0 2 2 2 2 ssDNA-binding domain of telomere protection protein SSB PF00436.25 gi|284163709|ref|YP_003401988.1| - 0.0014 18.7 0.0 1.3 9.2 0.0 3.2 3 0 0 3 3 3 1 Single-strand binding protein family tRNA_anti_2 PF13742.6 gi|284163709|ref|YP_003401988.1| - 0.0028 17.8 0.0 0.89 9.8 0.0 3.2 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain DUF4131 PF13567.6 gi|284163709|ref|YP_003401988.1| - 0.011 15.4 0.1 22 4.6 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) Rep_fac-A_C PF08646.10 gi|284163709|ref|YP_003401988.1| - 0.043 13.6 0.0 22 4.7 0.0 3.1 3 0 0 3 3 3 0 Replication factor-A C terminal domain CBFD_NFYB_HMF PF00808.23 gi|284163710|ref|YP_003401989.1| - 2.6e-26 91.7 0.2 2.4e-13 50.1 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|284163710|ref|YP_003401989.1| - 7e-16 58.8 1.1 7e-11 42.6 0.2 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|284163710|ref|YP_003401989.1| - 2.6e-07 30.7 0.3 8.3e-05 22.7 0.1 2.1 2 0 0 2 2 2 2 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|284163710|ref|YP_003401989.1| - 0.00033 21.0 0.9 0.00078 19.8 0.2 1.9 2 0 0 2 2 2 1 CENP-S protein TAF PF02969.17 gi|284163710|ref|YP_003401989.1| - 0.013 15.6 2.7 0.19 11.9 0.4 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID_20kDa PF03847.13 gi|284163710|ref|YP_003401989.1| - 0.038 14.5 1.8 0.044 14.3 0.3 1.8 2 1 0 2 2 2 0 Transcription initiation factor TFIID subunit A DUF1931 PF09123.11 gi|284163710|ref|YP_003401989.1| - 0.045 13.9 3.7 0.17 12.0 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) TFIID-18kDa PF02269.16 gi|284163710|ref|YP_003401989.1| - 0.063 13.3 0.2 1.5 8.9 0.0 2.1 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit Hist_deacetyl PF00850.19 gi|284163711|ref|YP_003401990.1| - 9.4e-84 281.5 0.0 1.4e-83 280.9 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Transglut_i_TM PF14400.6 gi|284163711|ref|YP_003401990.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices T3SS_needle_E PF08988.10 gi|284163711|ref|YP_003401990.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Type III secretion system, cytoplasmic E component of needle tRNA_NucTransf2 PF09249.11 gi|284163712|ref|YP_003401991.1| - 1.1e-42 144.8 0.0 1.8e-42 144.1 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|284163712|ref|YP_003401991.1| - 1.5e-12 47.6 0.0 2.7e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|284163712|ref|YP_003401991.1| - 0.00044 20.5 0.0 0.0033 17.6 0.0 2.1 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain PDDEXK_5 PF11645.8 gi|284163713|ref|YP_003401992.1| - 1.3e-24 86.7 0.0 1.5e-24 86.5 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease NikR_C PF08753.11 gi|284163714|ref|YP_003401993.1| - 3.1e-10 40.1 0.0 2e-06 27.9 0.0 2.3 2 0 0 2 2 2 2 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|284163714|ref|YP_003401993.1| - 1.9e-06 27.6 0.1 4.2e-06 26.5 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF1978 PF09321.10 gi|284163714|ref|YP_003401993.1| - 0.18 11.1 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) HalX PF08663.10 gi|284163714|ref|YP_003401993.1| - 0.8 10.1 4.9 5.7 7.3 0.0 2.7 2 1 0 2 2 2 0 HalX domain cobW PF02492.19 gi|284163715|ref|YP_003401994.1| - 2.7e-49 167.2 0.0 3.4e-49 166.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|284163715|ref|YP_003401994.1| - 5.7e-25 87.1 0.1 1.3e-24 85.9 0.1 1.7 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|284163715|ref|YP_003401994.1| - 0.012 15.5 0.0 0.44 10.4 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_16 PF13191.6 gi|284163715|ref|YP_003401994.1| - 0.026 14.9 0.0 0.1 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain TsaE PF02367.17 gi|284163715|ref|YP_003401994.1| - 0.054 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|284163715|ref|YP_003401994.1| - 0.073 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|284163715|ref|YP_003401994.1| - 0.087 13.3 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|284163715|ref|YP_003401994.1| - 0.1 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284163715|ref|YP_003401994.1| - 0.17 12.2 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|284163715|ref|YP_003401994.1| - 0.22 12.1 0.0 0.73 10.3 0.0 1.8 2 0 0 2 2 2 0 ABC transporter cobW PF02492.19 gi|284163716|ref|YP_003401995.1| - 3.3e-44 150.6 0.0 4.3e-44 150.2 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|284163716|ref|YP_003401995.1| - 1.3e-23 82.8 0.3 3.2e-23 81.4 0.3 1.7 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|284163716|ref|YP_003401995.1| - 0.00053 19.9 0.2 0.043 13.7 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|284163716|ref|YP_003401995.1| - 0.0024 18.2 0.0 0.0059 16.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|284163716|ref|YP_003401995.1| - 0.0034 16.4 0.1 0.36 9.8 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|284163716|ref|YP_003401995.1| - 0.0081 15.7 0.1 1.3 8.5 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain TsaE PF02367.17 gi|284163716|ref|YP_003401995.1| - 0.01 15.8 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|284163716|ref|YP_003401995.1| - 0.016 15.7 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284163716|ref|YP_003401995.1| - 0.016 15.4 0.0 0.081 13.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|284163716|ref|YP_003401995.1| - 0.022 15.3 0.0 0.046 14.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|284163716|ref|YP_003401995.1| - 0.067 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|284163716|ref|YP_003401995.1| - 0.13 12.6 1.1 0.28 11.5 0.0 2.1 3 0 0 3 3 3 0 AAA ATPase domain AAA_29 PF13555.6 gi|284163716|ref|YP_003401995.1| - 0.14 11.9 0.1 0.42 10.4 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2796 PF10986.8 gi|284163716|ref|YP_003401995.1| - 4.8 7.1 13.6 7.1 6.6 12.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2796) MoCF_biosynth PF00994.24 gi|284163717|ref|YP_003401996.1| - 3.3e-33 114.4 0.1 4.1e-33 114.1 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain GFO_IDH_MocA PF01408.22 gi|284163719|ref|YP_003401998.1| - 2.3e-29 102.7 1.3 5.2e-27 95.1 0.2 2.2 2 0 0 2 2 2 2 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284163719|ref|YP_003401998.1| - 3.4e-07 30.3 0.0 6.1e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|284163719|ref|YP_003401998.1| - 8.3e-05 23.1 0.1 0.00023 21.7 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284163719|ref|YP_003401998.1| - 0.0036 17.5 0.7 0.0084 16.3 0.1 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|284163719|ref|YP_003401998.1| - 0.0044 16.6 0.6 0.0091 15.6 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|284163719|ref|YP_003401998.1| - 0.0088 15.4 0.1 0.02 14.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|284163719|ref|YP_003401998.1| - 0.012 16.3 1.0 0.029 15.1 0.4 1.9 2 0 0 2 2 2 0 CoA binding domain NAD_binding_3 PF03447.16 gi|284163719|ref|YP_003401998.1| - 0.02 15.5 0.3 0.047 14.3 0.3 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain HIGH_NTase1 PF05636.11 gi|284163719|ref|YP_003401998.1| - 0.095 11.9 0.3 0.15 11.2 0.3 1.2 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase HalOD1 PF18545.1 gi|284163720|ref|YP_003401999.1| - 7.6e-13 48.5 0.6 1e-12 48.1 0.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HEPN_AbiU2 PF18734.1 gi|284163720|ref|YP_003401999.1| - 0.042 13.4 0.1 0.048 13.2 0.1 1.1 1 0 0 1 1 1 0 AbiU2 PadR PF03551.14 gi|284163721|ref|YP_003402000.1| - 4.4e-13 49.0 0.3 5.2e-13 48.8 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284163721|ref|YP_003402000.1| - 0.0025 17.7 0.2 0.0034 17.3 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|284163721|ref|YP_003402000.1| - 0.008 16.5 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4358) HTH_27 PF13463.6 gi|284163721|ref|YP_003402000.1| - 0.056 13.9 0.0 0.065 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain CSD PF00313.22 gi|284163722|ref|YP_003402001.1| - 1.1e-18 66.8 0.1 1.2e-18 66.7 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|284163722|ref|YP_003402001.1| - 0.041 13.8 1.2 0.089 12.7 1.2 1.7 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|284163722|ref|YP_003402001.1| - 0.093 12.4 2.7 0.13 11.9 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Vut_1 PF02592.15 gi|284163723|ref|YP_003402002.1| - 5.8e-50 169.5 5.7 5.8e-50 169.5 5.7 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter Caps_synth_CapC PF14102.6 gi|284163723|ref|YP_003402002.1| - 0.54 10.7 16.4 2.6 8.5 5.9 3.6 2 1 2 4 4 4 0 Capsule biosynthesis CapC Peptidase_M29 PF02073.15 gi|284163724|ref|YP_003402003.1| - 1.3e-60 205.4 0.0 1.5e-60 205.2 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) 3HCDH_RFF PF18321.1 gi|284163724|ref|YP_003402003.1| - 0.13 12.8 1.0 1.5 9.3 0.2 2.9 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DUF309 PF03745.14 gi|284163725|ref|YP_003402004.1| - 1.2e-18 66.5 3.4 1.9e-18 65.9 3.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Aldo_ket_red PF00248.21 gi|284163726|ref|YP_003402005.1| - 4.5e-74 249.3 0.0 5.1e-74 249.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family NikR_C PF08753.11 gi|284163726|ref|YP_003402005.1| - 0.049 13.8 0.0 0.099 12.8 0.0 1.5 1 0 0 1 1 1 0 NikR C terminal nickel binding domain RHH_5 PF07878.11 gi|284163726|ref|YP_003402005.1| - 0.056 13.3 0.2 0.17 11.8 0.2 1.8 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Epimerase PF01370.21 gi|284163727|ref|YP_003402006.1| - 9.7e-25 87.4 0.0 1.2e-24 87.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284163727|ref|YP_003402006.1| - 3.9e-12 45.8 0.0 5.2e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|284163727|ref|YP_003402006.1| - 9.8e-12 44.6 0.0 3.8e-11 42.6 0.0 1.7 2 0 0 2 2 2 1 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|284163727|ref|YP_003402006.1| - 1.3e-10 41.2 0.5 1.3e-09 38.0 0.2 2.5 1 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|284163727|ref|YP_003402006.1| - 1.7e-09 37.8 0.0 2.2e-09 37.4 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|284163727|ref|YP_003402006.1| - 5.9e-09 35.5 0.2 2.6e-06 26.8 0.0 2.7 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|284163727|ref|YP_003402006.1| - 0.00033 20.3 0.0 0.00052 19.6 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|284163727|ref|YP_003402006.1| - 0.00038 19.7 0.1 0.0017 17.5 0.1 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain Ldh_1_N PF00056.23 gi|284163727|ref|YP_003402006.1| - 0.12 12.5 0.1 5.6 7.1 0.0 2.2 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DHNA PF04038.12 gi|284163728|ref|YP_003402007.1| - 9.9e-42 141.9 0.0 1.1e-41 141.7 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase PPP4R2 PF09184.11 gi|284163730|ref|YP_003402009.1| - 2.8 7.5 12.2 2.7 7.5 12.2 1.2 1 0 0 1 1 1 0 PPP4R2 NOA36 PF06524.12 gi|284163730|ref|YP_003402009.1| - 6.7 5.9 16.7 8.8 5.6 16.7 1.3 1 0 0 1 1 1 0 NOA36 protein Creatininase PF02633.14 gi|284163731|ref|YP_003402010.1| - 8.2e-67 225.2 1.7 9.3e-67 225.0 1.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_membrane PF00664.23 gi|284163733|ref|YP_003402012.1| - 9.5e-45 153.4 0.8 1.2e-44 153.0 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|284163733|ref|YP_003402012.1| - 1.4e-37 129.3 0.0 2.8e-37 128.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|284163733|ref|YP_003402012.1| - 0.00017 21.9 0.1 0.00085 19.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284163733|ref|YP_003402012.1| - 0.0011 19.4 0.1 0.0024 18.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284163733|ref|YP_003402012.1| - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|284163733|ref|YP_003402012.1| - 0.0021 17.9 0.0 0.0056 16.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system Zeta_toxin PF06414.12 gi|284163733|ref|YP_003402012.1| - 0.0042 16.4 0.0 0.0085 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin SMC_N PF02463.19 gi|284163733|ref|YP_003402012.1| - 0.0042 16.5 0.6 0.13 11.7 0.1 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|284163733|ref|YP_003402012.1| - 0.0044 16.8 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|284163733|ref|YP_003402012.1| - 0.0066 17.0 0.0 0.019 15.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|284163733|ref|YP_003402012.1| - 0.0077 16.0 0.1 0.018 14.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284163733|ref|YP_003402012.1| - 0.011 15.4 0.1 0.032 14.0 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2107 PF09880.9 gi|284163733|ref|YP_003402012.1| - 0.012 15.7 2.4 0.013 15.6 0.5 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) Guanylate_kin PF00625.21 gi|284163733|ref|YP_003402012.1| - 0.028 14.1 0.4 0.17 11.5 0.1 2.4 2 1 0 2 2 2 0 Guanylate kinase AAA_33 PF13671.6 gi|284163733|ref|YP_003402012.1| - 0.035 14.2 0.0 0.084 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284163733|ref|YP_003402012.1| - 0.042 14.3 0.0 0.09 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284163733|ref|YP_003402012.1| - 0.051 14.0 0.0 0.36 11.3 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|284163733|ref|YP_003402012.1| - 0.055 12.5 0.0 0.099 11.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2157 PF09925.9 gi|284163733|ref|YP_003402012.1| - 0.096 12.5 4.0 0.8 9.5 0.1 3.0 3 0 0 3 3 3 0 Predicted membrane protein (DUF2157) AAA_5 PF07728.14 gi|284163733|ref|YP_003402012.1| - 0.11 12.6 0.2 0.76 9.8 0.0 2.4 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|284163733|ref|YP_003402012.1| - 0.14 12.3 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|284163733|ref|YP_003402012.1| - 0.14 10.9 0.1 0.27 10.0 0.1 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|284163733|ref|YP_003402012.1| - 0.14 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|284163733|ref|YP_003402012.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF1385 PF07136.11 gi|284163733|ref|YP_003402012.1| - 0.18 11.1 0.4 0.31 10.3 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) DUF192 PF02643.15 gi|284163734|ref|YP_003402013.1| - 1.9e-29 101.7 0.0 2.7e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HTH_20 PF12840.7 gi|284163738|ref|YP_003402017.1| - 0.088 12.9 0.1 0.32 11.1 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Caps_synth_CapC PF14102.6 gi|284163739|ref|YP_003402018.1| - 0.06 13.8 0.1 0.06 13.8 0.1 1.5 2 0 0 2 2 2 0 Capsule biosynthesis CapC Aldo_ket_red PF00248.21 gi|284163741|ref|YP_003402020.1| - 9.4e-62 208.9 0.0 1.2e-59 202.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DpaA_N PF16924.5 gi|284163741|ref|YP_003402020.1| - 0.05 13.7 0.0 0.094 12.8 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF2238 PF09997.9 gi|284163743|ref|YP_003402022.1| - 0.014 15.2 1.3 0.014 15.2 1.3 4.0 4 1 0 4 4 4 0 Predicted membrane protein (DUF2238) zf-ribbon_3 PF13248.6 gi|284163744|ref|YP_003402023.1| - 0.0053 16.1 1.7 0.088 12.3 0.9 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-HYPF PF07503.12 gi|284163744|ref|YP_003402023.1| - 0.013 15.3 7.6 0.02 14.6 1.0 2.1 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.10 gi|284163744|ref|YP_003402023.1| - 0.014 15.5 4.3 0.038 14.1 4.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|284163744|ref|YP_003402023.1| - 0.019 15.0 0.6 0.019 15.0 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Yippee-Mis18 PF03226.14 gi|284163744|ref|YP_003402023.1| - 0.027 14.7 1.2 0.074 13.3 1.3 1.6 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-H2C2_2 PF13465.6 gi|284163744|ref|YP_003402023.1| - 0.033 14.6 1.2 5.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc-ribbons_6 PF07191.12 gi|284163744|ref|YP_003402023.1| - 0.053 13.5 2.6 0.46 10.5 2.6 1.9 1 1 0 1 1 1 0 zinc-ribbons DUF1451 PF07295.11 gi|284163744|ref|YP_003402023.1| - 0.1 12.6 0.9 1.6 8.8 0.0 2.0 2 0 0 2 2 2 0 Zinc-ribbon containing domain Zn_Tnp_IS1595 PF12760.7 gi|284163744|ref|YP_003402023.1| - 0.12 12.3 6.3 0.14 12.1 2.0 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain RHH_1 PF01402.21 gi|284163746|ref|YP_003402025.1| - 0.00017 21.4 0.1 0.00017 21.4 0.1 2.4 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|284163746|ref|YP_003402025.1| - 0.0067 16.0 0.1 0.013 15.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|284163746|ref|YP_003402025.1| - 0.0094 16.5 0.0 0.02 15.4 0.0 1.6 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system RHH_4 PF13467.6 gi|284163746|ref|YP_003402025.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix domain Glyoxalase PF00903.25 gi|284163747|ref|YP_003402026.1| - 9e-28 97.0 2.8 9.4e-15 54.9 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284163747|ref|YP_003402026.1| - 4.3e-06 26.9 0.7 0.089 13.1 0.1 2.7 1 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|284163747|ref|YP_003402026.1| - 1.8 8.7 5.9 14 5.8 1.8 2.7 1 1 0 2 2 2 0 Glyoxalase-like domain Abhydrolase_2 PF02230.16 gi|284163748|ref|YP_003402027.1| - 2.4e-17 63.5 0.0 1.5e-16 60.9 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|284163748|ref|YP_003402027.1| - 1.1e-09 37.9 0.4 5.5e-05 22.6 0.2 2.7 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|284163748|ref|YP_003402027.1| - 0.00012 21.6 0.1 0.034 13.6 0.0 2.6 2 1 0 3 3 3 2 Prolyl oligopeptidase family FSH1 PF03959.13 gi|284163748|ref|YP_003402027.1| - 0.00024 20.8 0.0 0.0016 18.1 0.0 1.9 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.20 gi|284163748|ref|YP_003402027.1| - 0.00025 20.8 0.0 0.035 13.8 0.0 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|284163748|ref|YP_003402027.1| - 0.0018 17.8 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.20 gi|284163748|ref|YP_003402027.1| - 0.058 13.0 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Glyoxalase PF00903.25 gi|284163749|ref|YP_003402028.1| - 1.2e-08 35.2 1.7 1.7e-08 34.7 0.5 1.8 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284163749|ref|YP_003402028.1| - 2.1e-05 24.7 0.6 0.0012 19.1 0.2 2.5 1 1 2 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284163749|ref|YP_003402028.1| - 0.00018 22.3 1.0 0.00028 21.6 1.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain TMEM171 PF15471.6 gi|284163750|ref|YP_003402029.1| - 0.097 11.6 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein family 171 tRNA_anti-codon PF01336.25 gi|284163751|ref|YP_003402030.1| - 0.066 13.2 0.1 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Notch PF00066.17 gi|284163751|ref|YP_003402030.1| - 0.15 12.5 0.6 0.24 11.9 0.6 1.3 1 0 0 1 1 1 0 LNR domain RMI1_C PF16099.5 gi|284163751|ref|YP_003402030.1| - 0.18 11.6 0.1 0.46 10.3 0.1 1.6 2 0 0 2 2 2 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Oxidored_molyb PF00174.19 gi|284163752|ref|YP_003402031.1| - 3.4e-43 147.2 0.0 5.4e-43 146.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|284163752|ref|YP_003402031.1| - 2.4e-09 37.3 0.1 6.3e-09 36.0 0.1 1.7 1 1 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain Big_7 PF17957.1 gi|284163752|ref|YP_003402031.1| - 0.011 16.5 0.1 0.029 15.1 0.1 1.8 1 0 0 1 1 1 0 Bacterial Ig domain BNR PF02012.20 gi|284163752|ref|YP_003402031.1| - 0.14 12.3 1.8 0.52 10.5 0.5 2.7 2 0 0 2 2 2 0 BNR/Asp-box repeat DUF883 PF05957.13 gi|284163753|ref|YP_003402032.1| - 0.0022 18.6 2.1 0.0037 17.8 2.1 1.5 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) Vpu PF00558.19 gi|284163754|ref|YP_003402033.1| - 4.3 7.2 7.1 0.43 10.4 1.8 1.8 2 0 0 2 2 2 0 Vpu protein COX1 PF00115.20 gi|284163755|ref|YP_003402034.1| - 1.5e-89 300.8 68.9 1.6e-88 297.4 64.5 2.0 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I Cupredoxin_1 PF13473.6 gi|284163756|ref|YP_003402035.1| - 2.6e-11 43.5 0.2 1.3e-10 41.3 0.0 2.1 2 1 0 2 2 2 1 Cupredoxin-like domain COX2 PF00116.20 gi|284163756|ref|YP_003402035.1| - 3.6e-10 39.8 0.0 6.4e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Big_3_5 PF16640.5 gi|284163756|ref|YP_003402035.1| - 2e-05 24.7 6.1 0.00022 21.4 3.3 2.6 2 1 0 2 2 2 1 Bacterial Ig-like domain (group 3) Copper-bind PF00127.20 gi|284163756|ref|YP_003402035.1| - 0.0045 17.4 2.5 0.48 10.9 0.4 3.3 2 2 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family COX2-transmemb PF09125.10 gi|284163756|ref|YP_003402035.1| - 0.011 15.5 0.8 0.018 14.8 0.8 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane Big_7 PF17957.1 gi|284163756|ref|YP_003402035.1| - 0.15 12.9 6.2 0.081 13.7 1.5 2.4 2 0 0 2 2 2 0 Bacterial Ig domain fn3_5 PF06280.12 gi|284163756|ref|YP_003402035.1| - 0.15 12.7 0.6 5.7 7.7 0.0 2.8 2 2 0 2 2 2 0 Fn3-like domain SPC25 PF06703.11 gi|284163757|ref|YP_003402036.1| - 0.057 13.2 0.3 0.066 13.0 0.3 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Orf78 PF06024.12 gi|284163757|ref|YP_003402036.1| - 0.11 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Orf78 (ac78) Tmemb_170 PF10190.9 gi|284163758|ref|YP_003402037.1| - 0.03 14.7 1.1 0.034 14.5 1.1 1.1 1 0 0 1 1 1 0 Putative transmembrane protein 170 HEV_ORF1 PF02444.16 gi|284163758|ref|YP_003402037.1| - 0.64 10.6 3.1 1.1 9.9 3.1 1.4 1 1 0 1 1 1 0 Hepatitis E virus ORF-2 (Putative capsid protein) DsbD_2 PF13386.6 gi|284163759|ref|YP_003402038.1| - 1.4e-51 175.3 12.4 1.6e-51 175.1 12.4 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF981 PF06168.11 gi|284163759|ref|YP_003402038.1| - 0.082 12.8 6.3 0.76 9.7 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF981) DUF2182 PF09948.9 gi|284163759|ref|YP_003402038.1| - 3.1 7.7 7.4 16 5.3 0.3 2.9 3 0 0 3 3 3 0 Predicted metal-binding integral membrane protein (DUF2182) E1-E2_ATPase PF00122.20 gi|284163760|ref|YP_003402039.1| - 5.1e-45 153.2 0.8 1.1e-44 152.2 0.8 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|284163760|ref|YP_003402039.1| - 4.3e-32 112.1 3.0 9.4e-32 111.0 3.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|284163760|ref|YP_003402039.1| - 2.9e-08 34.0 0.0 1.3e-07 31.9 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|284163760|ref|YP_003402039.1| - 6.5e-05 22.8 0.6 0.0001 22.2 0.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase zf-CDGSH PF09360.10 gi|284163761|ref|YP_003402040.1| - 3.1e-12 46.5 0.5 5.7e-12 45.7 0.2 1.6 2 0 0 2 2 2 1 Iron-binding zinc finger CDGSH type DUF4191 PF13829.6 gi|284163762|ref|YP_003402041.1| - 1.2 8.4 4.8 0.67 9.3 3.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) CPP1-like PF11833.8 gi|284163762|ref|YP_003402041.1| - 1.4 8.6 9.4 1.7 8.3 9.4 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2892 PF11127.8 gi|284163762|ref|YP_003402041.1| - 2.5 8.2 12.9 0.29 11.2 6.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) DUF485 PF04341.12 gi|284163762|ref|YP_003402041.1| - 3.4 7.7 12.7 0.21 11.6 6.1 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF485 CrgA PF06781.12 gi|284163762|ref|YP_003402041.1| - 9.3 6.4 7.7 1.6 8.9 1.2 2.0 1 1 1 2 2 2 0 Cell division protein CrgA Methyltransf_25 PF13649.6 gi|284163763|ref|YP_003402042.1| - 2.1e-13 50.8 0.0 4.2e-13 49.8 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284163763|ref|YP_003402042.1| - 2e-10 41.2 0.0 3.6e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|284163763|ref|YP_003402042.1| - 1.3e-09 37.8 0.0 1.7e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|284163763|ref|YP_003402042.1| - 5.2e-08 32.9 0.0 1.5e-07 31.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284163763|ref|YP_003402042.1| - 2.1e-07 30.5 0.0 2.7e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|284163763|ref|YP_003402042.1| - 2.8e-07 30.4 0.0 3.5e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284163763|ref|YP_003402042.1| - 9.6e-06 26.3 0.0 1.8e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|284163763|ref|YP_003402042.1| - 0.00096 18.8 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.14 gi|284163763|ref|YP_003402042.1| - 0.0066 16.0 0.0 0.0089 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|284163763|ref|YP_003402042.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|284163763|ref|YP_003402042.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Epimerase PF01370.21 gi|284163764|ref|YP_003402043.1| - 5.3e-31 107.9 0.0 2.9e-30 105.5 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284163764|ref|YP_003402043.1| - 9.3e-20 71.3 0.0 9.1e-19 68.0 0.0 2.5 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|284163764|ref|YP_003402043.1| - 2e-13 50.1 0.1 3e-13 49.5 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|284163764|ref|YP_003402043.1| - 1.2e-10 41.0 0.0 7.6e-09 35.1 0.0 2.1 2 0 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|284163764|ref|YP_003402043.1| - 2.9e-06 26.5 0.0 3.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|284163764|ref|YP_003402043.1| - 9.6e-06 25.6 0.3 1.9e-05 24.6 0.3 1.5 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|284163764|ref|YP_003402043.1| - 3.4e-05 23.1 0.0 0.0097 15.1 0.0 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|284163764|ref|YP_003402043.1| - 0.0096 15.4 0.3 0.61 9.5 0.2 2.7 2 1 0 2 2 2 1 short chain dehydrogenase ECH_1 PF00378.20 gi|284163766|ref|YP_003402045.1| - 5.1e-36 124.3 0.0 6.4e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284163766|ref|YP_003402045.1| - 1.8e-21 77.0 0.0 2e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Acetyltransf_3 PF13302.7 gi|284163767|ref|YP_003402046.1| - 5.1e-29 101.7 0.0 6.5e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284163767|ref|YP_003402046.1| - 3e-12 46.9 0.0 3.4e-12 46.7 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284163767|ref|YP_003402046.1| - 3.1e-12 46.8 0.0 4.2e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|284163767|ref|YP_003402046.1| - 0.00029 20.5 0.0 0.0011 18.7 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284163767|ref|YP_003402046.1| - 0.00033 20.6 0.0 0.00059 19.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|284163767|ref|YP_003402046.1| - 0.0026 18.1 0.0 0.0062 16.9 0.0 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain DUF1672 PF07901.11 gi|284163767|ref|YP_003402046.1| - 0.11 11.8 0.0 0.13 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1672) NAD_synthase PF02540.17 gi|284163768|ref|YP_003402047.1| - 1.1e-80 270.2 0.0 1.4e-80 269.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|284163768|ref|YP_003402047.1| - 1.7e-05 23.8 0.0 0.0041 16.0 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|284163768|ref|YP_003402047.1| - 0.0041 16.8 0.3 0.0093 15.7 0.1 1.5 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|284163768|ref|YP_003402047.1| - 0.028 13.9 0.0 0.23 10.9 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Acetyltransf_1 PF00583.25 gi|284163769|ref|YP_003402048.1| - 2.6e-13 50.2 0.0 5.1e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284163769|ref|YP_003402048.1| - 6.6e-08 32.9 0.0 1.5e-07 31.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284163769|ref|YP_003402048.1| - 5e-07 30.0 0.2 1.2e-06 28.8 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284163769|ref|YP_003402048.1| - 2.4e-05 25.0 0.1 3.9e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284163769|ref|YP_003402048.1| - 5.7e-05 23.1 0.0 9.6e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284163769|ref|YP_003402048.1| - 0.0047 17.0 0.0 0.011 15.8 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FeoC PF09012.10 gi|284163769|ref|YP_003402048.1| - 0.045 13.8 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator TFIIE_alpha PF02002.17 gi|284163769|ref|YP_003402048.1| - 0.079 12.8 0.3 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit Acetyltransf_9 PF13527.7 gi|284163769|ref|YP_003402048.1| - 0.12 12.5 0.1 0.51 10.4 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TFIIB PF00382.19 gi|284163770|ref|YP_003402049.1| - 1.7e-45 153.0 2.1 3.5e-25 87.8 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|284163770|ref|YP_003402049.1| - 5.9e-12 44.9 1.5 1.2e-11 43.9 1.5 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|284163770|ref|YP_003402049.1| - 0.0069 15.9 0.8 0.075 12.6 0.1 3.1 2 1 0 2 2 2 1 Sigma-70, region 4 zf-RRN7 PF11781.8 gi|284163770|ref|YP_003402049.1| - 0.01 15.5 1.6 0.017 14.8 1.6 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HTH_23 PF13384.6 gi|284163770|ref|YP_003402049.1| - 0.03 14.1 0.4 0.21 11.5 0.1 2.7 2 0 0 2 2 2 0 Homeodomain-like domain Cyclin_N PF00134.23 gi|284163770|ref|YP_003402049.1| - 0.04 13.7 0.1 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain RB_B PF01857.20 gi|284163770|ref|YP_003402049.1| - 0.08 13.0 0.0 0.68 10.0 0.0 2.1 1 1 1 2 2 2 0 Retinoblastoma-associated protein B domain Sigma70_r4_2 PF08281.12 gi|284163770|ref|YP_003402049.1| - 0.088 12.5 0.1 0.28 10.9 0.1 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 Cyclin_C PF02984.19 gi|284163770|ref|YP_003402049.1| - 0.17 12.0 0.0 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain SBP PF03110.14 gi|284163770|ref|YP_003402049.1| - 2.4 8.5 6.3 0.4 11.0 0.3 2.6 3 0 0 3 3 3 0 SBP domain LssY_C PF14067.6 gi|284163771|ref|YP_003402050.1| - 0.0014 18.2 0.8 0.21 11.1 0.8 2.2 2 0 0 2 2 2 2 LssY C-terminus LPAM_1 PF08139.12 gi|284163771|ref|YP_003402050.1| - 3.3 8.4 7.5 0.78 10.4 2.3 2.6 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Usp PF00582.26 gi|284163772|ref|YP_003402051.1| - 1.8e-29 103.1 5.9 2e-29 102.9 5.9 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2953 PF11167.8 gi|284163773|ref|YP_003402052.1| - 0.052 13.6 2.4 0.16 12.1 2.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2953) Peptidase_U4 PF03419.13 gi|284163773|ref|YP_003402052.1| - 8.9 5.5 10.1 12 5.1 10.1 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA ATPase PF06745.13 gi|284163775|ref|YP_003402054.1| - 9.4e-53 178.9 0.0 1.2e-52 178.6 0.0 1.1 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|284163775|ref|YP_003402054.1| - 7.4e-06 24.8 0.7 2.5e-05 23.1 0.3 2.0 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|284163775|ref|YP_003402054.1| - 1.2e-05 25.0 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|284163775|ref|YP_003402054.1| - 1.9e-05 24.1 0.1 0.01 15.2 0.0 2.2 1 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|284163775|ref|YP_003402054.1| - 2.3e-05 24.2 0.0 8.7e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|284163775|ref|YP_003402054.1| - 0.00029 20.7 0.0 0.00057 19.8 0.0 1.5 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|284163775|ref|YP_003402054.1| - 0.00075 18.8 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Rad51 AAA_14 PF13173.6 gi|284163775|ref|YP_003402054.1| - 0.03 14.3 0.0 0.055 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 gi|284163775|ref|YP_003402054.1| - 0.067 12.6 0.0 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein NAD_kinase PF01513.21 gi|284163776|ref|YP_003402055.1| - 2.1e-36 125.7 0.3 7.8e-36 123.8 0.3 1.8 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|284163776|ref|YP_003402055.1| - 0.1 12.2 0.2 0.17 11.5 0.2 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DSBA PF01323.20 gi|284163777|ref|YP_003402056.1| - 1.2e-34 119.8 0.0 1.4e-34 119.6 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|284163777|ref|YP_003402056.1| - 1.9e-10 41.2 0.1 4.8e-07 30.1 0.0 2.2 1 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|284163777|ref|YP_003402056.1| - 0.00045 20.6 0.1 0.0019 18.6 0.0 2.1 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|284163777|ref|YP_003402056.1| - 0.0005 19.8 0.0 0.011 15.4 0.0 2.3 2 1 1 3 3 3 1 Thioredoxin NIPSNAP PF07978.13 gi|284163777|ref|YP_003402056.1| - 0.11 12.8 0.5 0.69 10.2 0.1 2.3 2 0 0 2 2 2 0 NIPSNAP RlaP PF10127.9 gi|284163779|ref|YP_003402058.1| - 7.8e-26 91.2 0.1 1.5e-25 90.2 0.1 1.5 1 1 0 1 1 1 1 RNA repair pathway DNA polymerase beta family Polbeta PF18765.1 gi|284163779|ref|YP_003402058.1| - 0.0055 16.8 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|284163779|ref|YP_003402058.1| - 0.0077 16.5 0.0 0.017 15.4 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain GCHY-1 PF02649.14 gi|284163780|ref|YP_003402059.1| - 1.6e-75 253.9 1.7 1.9e-75 253.8 1.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 RecX PF02631.16 gi|284163780|ref|YP_003402059.1| - 0.019 15.4 0.3 0.53 10.7 0.0 2.4 2 0 0 2 2 2 0 RecX family PDCD9 PF07147.12 gi|284163780|ref|YP_003402059.1| - 0.089 12.0 0.1 0.21 10.8 0.0 1.5 2 0 0 2 2 2 0 Mitochondrial 28S ribosomal protein S30 (PDCD9) PASTA PF03793.19 gi|284163780|ref|YP_003402059.1| - 0.11 12.4 0.0 0.33 10.8 0.0 1.8 1 0 0 1 1 1 0 PASTA domain Lactamase_B_3 PF13483.6 gi|284163781|ref|YP_003402060.1| - 2.3e-29 102.4 0.0 3.4e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284163781|ref|YP_003402060.1| - 4.1e-10 39.5 0.0 6.1e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TrmB PF01978.19 gi|284163782|ref|YP_003402061.1| - 1.2e-20 73.2 0.2 3e-20 71.9 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|284163782|ref|YP_003402061.1| - 0.049 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Regulator_TrmB PF11495.8 gi|284163782|ref|YP_003402061.1| - 0.05 12.8 0.0 0.078 12.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_9 PF08221.11 gi|284163782|ref|YP_003402061.1| - 0.093 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Thioredox_DsbH PF03190.15 gi|284163783|ref|YP_003402062.1| - 7.1e-25 87.9 0.0 1.3e-24 87.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|284163783|ref|YP_003402062.1| - 2.4e-13 50.1 0.0 5.1e-13 49.0 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|284163783|ref|YP_003402062.1| - 2e-08 34.2 0.0 3.4e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|284163783|ref|YP_003402062.1| - 3.7e-05 24.1 0.0 6.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.13 gi|284163783|ref|YP_003402062.1| - 0.016 14.3 0.6 2.1 7.3 0.1 2.7 2 1 1 3 3 3 0 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 gi|284163783|ref|YP_003402062.1| - 0.16 11.2 1.9 1.5 8.0 0.3 2.2 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|284163783|ref|YP_003402062.1| - 0.24 10.9 0.5 0.67 9.4 0.0 1.7 2 1 0 2 2 2 0 Glycosyl hydrolase family 76 FxsA PF04186.13 gi|284163784|ref|YP_003402063.1| - 1.4e-27 96.0 11.3 1.7e-27 95.7 11.3 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein PKD_3 PF16820.5 gi|284163785|ref|YP_003402064.1| - 0.15 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 PKD-like domain SSF PF00474.17 gi|284163786|ref|YP_003402065.1| - 2.7e-64 217.5 28.9 4e-64 217.0 28.9 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Pro_dh PF01619.18 gi|284163788|ref|YP_003402067.1| - 1.5e-26 93.6 0.0 3.6e-26 92.4 0.0 1.6 1 1 0 1 1 1 1 Proline dehydrogenase Frankia_peptide PF14407.6 gi|284163788|ref|YP_003402067.1| - 0.11 12.5 0.8 0.33 11.0 0.0 2.3 3 0 0 3 3 3 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HTH_10 PF04967.12 gi|284163789|ref|YP_003402068.1| - 4.7e-19 67.9 0.0 8.8e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|284163789|ref|YP_003402068.1| - 8.6e-06 25.9 0.1 1.6e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 gi|284163789|ref|YP_003402068.1| - 4.5e-05 22.9 0.1 0.0001 21.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|284163789|ref|YP_003402068.1| - 0.00013 21.5 0.6 0.0014 18.2 0.6 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_50 PF18024.1 gi|284163789|ref|YP_003402068.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 gi|284163789|ref|YP_003402068.1| - 0.0022 17.7 0.0 0.0058 16.4 0.0 1.8 2 0 0 2 2 2 1 helix-turn-helix, Psq domain HTH_11 PF08279.12 gi|284163789|ref|YP_003402068.1| - 0.0039 17.1 0.0 0.011 15.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|284163789|ref|YP_003402068.1| - 0.0039 17.0 0.1 0.035 14.0 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.20 gi|284163789|ref|YP_003402068.1| - 0.0059 16.5 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|284163789|ref|YP_003402068.1| - 0.0098 15.4 0.1 0.022 14.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|284163789|ref|YP_003402068.1| - 0.016 15.0 0.1 0.053 13.4 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|284163789|ref|YP_003402068.1| - 0.018 14.7 0.1 0.037 13.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|284163789|ref|YP_003402068.1| - 0.021 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|284163789|ref|YP_003402068.1| - 0.028 14.5 0.1 0.093 12.8 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 gi|284163789|ref|YP_003402068.1| - 0.045 13.5 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family UPF0122 PF04297.14 gi|284163789|ref|YP_003402068.1| - 0.071 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.19 gi|284163789|ref|YP_003402068.1| - 0.14 11.7 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|284163789|ref|YP_003402068.1| - 0.16 11.8 0.7 0.58 10.0 0.0 2.2 3 0 0 3 3 2 0 Homeodomain-like domain IF2_N PF04760.15 gi|284163789|ref|YP_003402068.1| - 0.2 11.5 0.1 0.34 10.7 0.1 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Aldedh PF00171.22 gi|284163790|ref|YP_003402069.1| - 1.2e-144 482.3 0.0 1.5e-144 482.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|284163790|ref|YP_003402069.1| - 0.0078 15.3 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) OmdA PF13376.6 gi|284163790|ref|YP_003402069.1| - 0.011 15.7 1.2 0.023 14.7 1.2 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated SPOUT_MTase_2 PF14419.6 gi|284163790|ref|YP_003402069.1| - 0.057 12.8 0.0 0.19 11.1 0.0 1.8 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP IclR PF01614.18 gi|284163791|ref|YP_003402070.1| - 1.2e-26 93.0 0.0 6.1e-26 90.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284163791|ref|YP_003402070.1| - 4.7e-14 51.9 0.6 5.6e-12 45.3 0.2 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284163791|ref|YP_003402070.1| - 1.1e-09 38.2 0.3 2.4e-09 37.1 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284163791|ref|YP_003402070.1| - 3.5e-09 36.4 0.2 1.3e-07 31.4 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|284163791|ref|YP_003402070.1| - 7.9e-08 31.7 0.0 1.7e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|284163791|ref|YP_003402070.1| - 2.3e-07 30.6 0.0 5.3e-07 29.5 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_5 PF01022.20 gi|284163791|ref|YP_003402070.1| - 2.2e-06 27.4 0.0 4.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|284163791|ref|YP_003402070.1| - 6.2e-05 23.4 0.1 0.00019 21.9 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|284163791|ref|YP_003402070.1| - 7.6e-05 22.6 0.0 0.002 18.0 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_40 PF14493.6 gi|284163791|ref|YP_003402070.1| - 0.0005 20.5 0.0 0.0011 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|284163791|ref|YP_003402070.1| - 0.00065 19.4 0.0 0.0028 17.4 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.19 gi|284163791|ref|YP_003402070.1| - 0.0016 18.3 0.0 0.025 14.4 0.0 2.5 3 0 0 3 3 2 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|284163791|ref|YP_003402070.1| - 0.003 17.3 0.0 0.0059 16.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.16 gi|284163791|ref|YP_003402070.1| - 0.0086 15.6 0.1 0.06 12.9 0.0 2.3 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_10 PF04967.12 gi|284163791|ref|YP_003402070.1| - 0.028 14.2 0.1 0.057 13.2 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_DeoR PF08220.12 gi|284163791|ref|YP_003402070.1| - 0.035 13.9 0.1 0.076 12.8 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|284163791|ref|YP_003402070.1| - 0.038 14.3 0.1 0.099 13.0 0.0 1.7 2 0 0 2 2 1 0 Penicillinase repressor Fe_dep_repress PF01325.19 gi|284163791|ref|YP_003402070.1| - 0.04 14.1 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|284163791|ref|YP_003402070.1| - 0.057 14.1 0.0 0.15 12.8 0.0 1.6 2 0 0 2 2 1 0 Replication protein A C terminal DUF4777 PF16007.5 gi|284163791|ref|YP_003402070.1| - 0.072 13.3 0.1 0.74 10.1 0.1 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4777) HTH_38 PF13936.6 gi|284163791|ref|YP_003402070.1| - 0.075 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|284163791|ref|YP_003402070.1| - 0.092 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.16 gi|284163791|ref|YP_003402070.1| - 0.13 12.1 0.0 0.49 10.2 0.0 1.9 2 1 0 2 2 2 0 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|284163791|ref|YP_003402070.1| - 0.13 12.2 0.6 0.35 10.7 0.1 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF3006 PF11213.8 gi|284163792|ref|YP_003402071.1| - 7.1e-06 26.2 0.0 1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) IclR PF01614.18 gi|284163793|ref|YP_003402072.1| - 2.5e-34 117.9 0.0 1.7e-32 112.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284163793|ref|YP_003402072.1| - 9e-16 57.4 0.3 2.3e-15 56.1 0.3 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284163793|ref|YP_003402072.1| - 1.2e-11 44.0 0.0 2e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284163793|ref|YP_003402072.1| - 1.4e-09 37.7 0.0 2.9e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284163793|ref|YP_003402072.1| - 1.4e-09 37.7 0.1 2.7e-08 33.6 0.0 2.3 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|284163793|ref|YP_003402072.1| - 4.4e-09 36.1 0.1 1.2e-08 34.7 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|284163793|ref|YP_003402072.1| - 8.3e-08 32.2 0.1 1.8e-07 31.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284163793|ref|YP_003402072.1| - 2.1e-06 27.5 0.0 4.3e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284163793|ref|YP_003402072.1| - 2.3e-05 24.2 0.2 4.1e-05 23.4 0.2 1.4 1 0 0 1 1 1 1 MarR family Mga PF05043.13 gi|284163793|ref|YP_003402072.1| - 0.00013 22.4 0.0 0.00024 21.6 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain RP-C PF03428.13 gi|284163793|ref|YP_003402072.1| - 0.00021 21.0 0.0 0.00044 20.0 0.0 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_34 PF13601.6 gi|284163793|ref|YP_003402072.1| - 0.00026 21.1 0.0 0.00064 19.8 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|284163793|ref|YP_003402072.1| - 0.00039 20.8 0.0 0.00085 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284163793|ref|YP_003402072.1| - 0.0014 19.1 0.8 0.0055 17.2 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_7 PF02796.15 gi|284163793|ref|YP_003402072.1| - 0.0028 17.7 0.0 0.0061 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 gi|284163793|ref|YP_003402072.1| - 0.0029 17.5 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|284163793|ref|YP_003402072.1| - 0.0037 17.6 0.0 0.007 16.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|284163793|ref|YP_003402072.1| - 0.005 16.8 0.0 0.015 15.3 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|284163793|ref|YP_003402072.1| - 0.0065 16.2 0.0 0.021 14.6 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|284163793|ref|YP_003402072.1| - 0.0075 16.0 0.8 0.026 14.2 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|284163793|ref|YP_003402072.1| - 0.0084 15.5 0.3 0.022 14.1 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 gi|284163793|ref|YP_003402072.1| - 0.017 14.9 0.1 0.066 13.1 0.0 2.0 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|284163793|ref|YP_003402072.1| - 0.017 15.0 0.4 0.074 13.0 0.1 2.2 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284163793|ref|YP_003402072.1| - 0.022 14.8 0.0 0.036 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_26 PF13443.6 gi|284163793|ref|YP_003402072.1| - 0.023 15.1 0.1 0.05 14.0 0.1 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_9 PF08221.11 gi|284163793|ref|YP_003402072.1| - 0.023 14.8 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain FUR PF01475.19 gi|284163793|ref|YP_003402072.1| - 0.031 14.4 0.1 0.062 13.5 0.1 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_15 PF12324.8 gi|284163793|ref|YP_003402072.1| - 0.05 13.6 0.0 0.16 11.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_28 PF13518.6 gi|284163793|ref|YP_003402072.1| - 0.063 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|284163793|ref|YP_003402072.1| - 0.067 13.1 0.3 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 ECF sigma factor TetR_N PF00440.23 gi|284163793|ref|YP_003402072.1| - 0.069 13.0 0.0 0.25 11.1 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family DprA_WH PF17782.1 gi|284163793|ref|YP_003402072.1| - 0.069 13.3 0.3 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 DprA winged helix domain Fe_dep_repress PF01325.19 gi|284163793|ref|YP_003402072.1| - 0.076 13.2 0.1 0.24 11.6 0.0 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.12 gi|284163793|ref|YP_003402072.1| - 0.082 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Mga PF08280.11 gi|284163793|ref|YP_003402072.1| - 0.11 12.5 0.3 0.11 12.5 0.3 1.6 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain GAF PF01590.26 gi|284163793|ref|YP_003402072.1| - 0.11 13.1 0.1 2.9 8.5 0.1 2.3 1 1 0 1 1 1 0 GAF domain HTH_46 PF15977.5 gi|284163793|ref|YP_003402072.1| - 0.19 11.8 0.0 0.43 10.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Acyl-CoA_dh_1 PF00441.24 gi|284163794|ref|YP_003402073.1| - 1.5e-34 119.3 1.7 2.6e-34 118.6 1.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284163794|ref|YP_003402073.1| - 5.7e-27 94.6 0.3 4.4e-26 91.8 0.0 2.5 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284163794|ref|YP_003402073.1| - 5.9e-24 84.1 0.0 1.1e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284163794|ref|YP_003402073.1| - 1.4e-09 38.3 1.0 2.2e-09 37.7 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|284163794|ref|YP_003402073.1| - 0.028 14.1 0.0 0.13 11.9 0.0 2.0 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Glyco_hydro_3 PF00933.21 gi|284163794|ref|YP_003402073.1| - 0.082 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 N terminal domain Acyl-CoA_dh_1 PF00441.24 gi|284163795|ref|YP_003402074.1| - 5.5e-52 176.0 3.9 7.7e-52 175.5 3.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284163795|ref|YP_003402074.1| - 9.2e-31 106.8 0.2 9.2e-31 106.8 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284163795|ref|YP_003402074.1| - 3.6e-29 101.7 6.9 5.6e-29 101.1 6.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284163795|ref|YP_003402074.1| - 4e-24 84.6 0.2 7.4e-24 83.8 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.13 gi|284163795|ref|YP_003402074.1| - 0.00031 19.9 1.4 0.00072 18.7 1.5 1.6 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF390 PF04094.14 gi|284163795|ref|YP_003402074.1| - 0.0071 14.7 3.2 0.01 14.2 3.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF390) HpaB_N PF11794.8 gi|284163795|ref|YP_003402074.1| - 0.21 11.2 8.6 0.059 13.0 1.6 2.8 2 2 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal 3HCDH_N PF02737.18 gi|284163796|ref|YP_003402075.1| - 9.2e-63 211.4 2.6 1.2e-62 211.0 2.6 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|284163796|ref|YP_003402075.1| - 2.5e-31 108.2 0.1 1.3e-30 105.8 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|284163796|ref|YP_003402075.1| - 3.5e-08 33.6 0.0 8.2e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|284163796|ref|YP_003402075.1| - 1.4e-05 24.7 1.1 1.6e-05 24.6 0.2 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|284163796|ref|YP_003402075.1| - 9.6e-05 22.6 3.9 9.6e-05 22.6 3.9 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|284163796|ref|YP_003402075.1| - 0.00033 21.2 7.1 0.0039 17.7 4.4 3.2 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|284163796|ref|YP_003402075.1| - 0.069 12.8 0.0 0.098 12.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA OTCace PF00185.24 gi|284163796|ref|YP_003402075.1| - 0.12 12.5 0.5 0.64 10.1 0.1 2.2 1 1 1 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Sacchrp_dh_NADP PF03435.18 gi|284163796|ref|YP_003402075.1| - 0.5 10.6 3.3 1.8 8.8 1.1 2.6 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Polysacc_synt_C PF14667.6 gi|284163798|ref|YP_003402077.1| - 2.3e-16 60.1 13.4 2.3e-16 60.1 13.4 4.0 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|284163798|ref|YP_003402077.1| - 1.7e-12 47.3 12.6 1.7e-12 47.3 12.6 2.4 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|284163798|ref|YP_003402077.1| - 3.3e-06 26.6 9.5 3.3e-06 26.6 9.5 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|284163798|ref|YP_003402077.1| - 0.00093 18.9 8.7 0.00093 18.9 8.7 3.2 3 0 0 3 3 3 1 MatE MurJ PF03023.14 gi|284163798|ref|YP_003402077.1| - 0.0012 17.5 15.5 0.0013 17.4 13.4 2.1 1 1 0 1 1 1 1 Lipid II flippase MurJ Atg14 PF10186.9 gi|284163798|ref|YP_003402077.1| - 0.03 13.4 3.1 0.048 12.8 3.1 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Sigma70_ner PF04546.13 gi|284163798|ref|YP_003402077.1| - 0.085 12.7 1.1 0.12 12.2 1.1 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF373 PF04123.13 gi|284163798|ref|YP_003402077.1| - 7.8 5.8 21.8 0.53 9.7 6.4 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF373) Acetyltransf_9 PF13527.7 gi|284163799|ref|YP_003402078.1| - 1.4e-20 73.6 0.0 4.3e-20 72.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284163799|ref|YP_003402078.1| - 0.0035 17.6 0.0 0.027 14.7 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284163799|ref|YP_003402078.1| - 0.23 11.4 0.0 0.6 10.1 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Polysacc_deac_1 PF01522.21 gi|284163800|ref|YP_003402079.1| - 5e-07 29.6 0.1 8.1e-07 29.0 0.1 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase FAD-oxidase_C PF02913.19 gi|284163801|ref|YP_003402080.1| - 4.9e-63 213.1 0.0 9.8e-63 212.1 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|284163801|ref|YP_003402080.1| - 2.5e-41 140.7 0.0 7.6e-41 139.1 0.0 1.9 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|284163801|ref|YP_003402080.1| - 4.6e-09 36.6 4.7 9.9e-09 35.5 4.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284163801|ref|YP_003402080.1| - 8.1e-09 35.9 4.0 1.6e-08 35.0 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|284163801|ref|YP_003402080.1| - 4.5e-06 26.8 0.0 0.0023 18.1 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Cytokin-bind PF09265.10 gi|284163801|ref|YP_003402080.1| - 0.00018 21.0 0.2 0.00029 20.3 0.2 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_9 PF13187.6 gi|284163801|ref|YP_003402080.1| - 0.0025 18.0 1.4 0.15 12.2 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284163801|ref|YP_003402080.1| - 0.0037 17.3 4.9 0.018 15.2 5.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284163801|ref|YP_003402080.1| - 0.065 13.4 1.9 0.53 10.5 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284163801|ref|YP_003402080.1| - 2.5 8.8 9.0 15 6.3 9.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284163801|ref|YP_003402080.1| - 7.3 6.6 15.7 1.2 9.1 4.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Cdc6_C PF09079.11 gi|284163802|ref|YP_003402081.1| - 3.6e-15 55.7 0.5 1.6e-14 53.7 0.2 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284163802|ref|YP_003402081.1| - 1.9e-13 50.8 0.0 4.6e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284163802|ref|YP_003402081.1| - 3.2e-09 37.4 0.1 1.2e-08 35.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|284163802|ref|YP_003402081.1| - 1.4e-06 28.8 1.4 9.7e-06 26.0 1.4 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|284163802|ref|YP_003402081.1| - 1.8e-06 27.5 0.1 5.2e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|284163802|ref|YP_003402081.1| - 4.1e-05 23.3 1.9 0.00014 21.7 0.1 2.4 3 0 0 3 3 3 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|284163802|ref|YP_003402081.1| - 0.0002 20.6 0.0 0.00039 19.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|284163802|ref|YP_003402081.1| - 0.0013 18.5 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|284163802|ref|YP_003402081.1| - 0.0038 16.7 0.1 1.2 8.5 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_5 PF07728.14 gi|284163802|ref|YP_003402081.1| - 0.0047 16.9 0.5 0.037 14.0 0.5 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|284163802|ref|YP_003402081.1| - 0.0054 16.7 0.0 0.0089 16.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.14 gi|284163802|ref|YP_003402081.1| - 0.011 15.9 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DEAD PF00270.29 gi|284163802|ref|YP_003402081.1| - 0.011 15.5 1.9 1.6 8.5 0.1 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|284163802|ref|YP_003402081.1| - 0.017 14.6 0.1 0.03 13.8 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Rad51 PF08423.11 gi|284163802|ref|YP_003402081.1| - 0.04 13.2 0.1 0.083 12.1 0.0 1.5 2 0 0 2 2 2 0 Rad51 RNA_helicase PF00910.22 gi|284163802|ref|YP_003402081.1| - 0.048 14.0 0.1 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|284163802|ref|YP_003402081.1| - 0.062 13.4 0.2 0.34 11.0 0.2 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|284163802|ref|YP_003402081.1| - 0.071 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.9 gi|284163802|ref|YP_003402081.1| - 0.08 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.25 gi|284163802|ref|YP_003402081.1| - 0.085 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Torsin PF06309.11 gi|284163802|ref|YP_003402081.1| - 0.099 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Torsin AAA_lid_10 PF17872.1 gi|284163802|ref|YP_003402081.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA lid domain ABC_tran PF00005.27 gi|284163802|ref|YP_003402081.1| - 0.12 12.9 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AsnC_trans_reg2 PF17805.1 gi|284163803|ref|YP_003402082.1| - 8.7e-44 147.6 0.0 8.5e-22 77.1 0.0 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|284163803|ref|YP_003402082.1| - 3.1e-06 26.9 0.2 0.0053 16.6 0.1 2.9 2 1 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284163803|ref|YP_003402082.1| - 0.13 11.8 0.0 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Acetyltransf_1 PF00583.25 gi|284163804|ref|YP_003402083.1| - 7.1e-17 61.7 0.1 1.3e-16 60.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|284163804|ref|YP_003402083.1| - 4e-11 43.3 0.0 5.6e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284163804|ref|YP_003402083.1| - 4.7e-09 36.3 0.0 7.5e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284163804|ref|YP_003402083.1| - 6e-09 36.2 0.0 1.2e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284163804|ref|YP_003402083.1| - 1.9e-06 28.6 0.2 3.1e-06 27.9 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284163804|ref|YP_003402083.1| - 0.0013 18.8 0.0 0.0032 17.6 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|284163804|ref|YP_003402083.1| - 0.0019 18.3 0.0 0.0041 17.2 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284163804|ref|YP_003402083.1| - 0.023 14.7 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Glycos_transf_3 PF00591.21 gi|284163805|ref|YP_003402084.1| - 1.5e-33 116.4 0.0 2.2e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|284163805|ref|YP_003402084.1| - 7.3e-08 32.1 0.0 3.4e-07 30.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PTPRCAP PF15713.5 gi|284163805|ref|YP_003402084.1| - 0.28 11.5 2.8 0.26 11.6 1.1 1.8 2 0 0 2 2 2 0 Protein tyrosine phosphatase receptor type C-associated adh_short_C2 PF13561.6 gi|284163806|ref|YP_003402085.1| - 6.4e-71 238.6 0.1 7.3e-71 238.4 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284163806|ref|YP_003402085.1| - 4.5e-55 186.1 0.1 5.3e-55 185.9 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284163806|ref|YP_003402085.1| - 2.4e-11 43.9 0.1 3.2e-11 43.5 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284163806|ref|YP_003402085.1| - 3.4e-06 26.7 1.1 1.8e-05 24.3 1.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|284163806|ref|YP_003402085.1| - 0.009 15.4 0.1 0.015 14.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|284163806|ref|YP_003402085.1| - 0.069 13.2 1.4 0.19 11.8 0.5 2.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|284163806|ref|YP_003402085.1| - 0.076 12.9 0.8 0.17 11.8 0.4 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LPD7 PF18821.1 gi|284163806|ref|YP_003402085.1| - 0.1 12.7 0.2 0.22 11.7 0.2 1.5 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 Sm_multidrug_ex PF06695.11 gi|284163807|ref|YP_003402086.1| - 8.6e-08 32.8 0.3 1.4e-07 32.2 0.3 1.4 1 0 0 1 1 1 1 Putative small multi-drug export protein AstE_AspA PF04952.14 gi|284163808|ref|YP_003402087.1| - 2e-33 115.8 0.0 2.3e-33 115.5 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Response_reg PF00072.24 gi|284163809|ref|YP_003402088.1| - 4e-18 65.6 0.0 5.2e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Gly_kinase PF02595.15 gi|284163809|ref|YP_003402088.1| - 0.11 11.5 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Glycerate kinase family Pro_isomerase PF00160.21 gi|284163810|ref|YP_003402089.1| - 3.9e-50 170.2 0.0 4.4e-50 170.0 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PAS_4 PF08448.10 gi|284163811|ref|YP_003402090.1| - 1.9e-95 314.6 46.1 3.5e-15 56.2 0.3 9.5 9 0 0 9 9 9 9 PAS fold PAS_9 PF13426.7 gi|284163811|ref|YP_003402090.1| - 1.3e-61 205.3 5.9 3.7e-11 43.2 0.0 9.5 9 0 0 9 9 9 9 PAS domain PAS PF00989.25 gi|284163811|ref|YP_003402090.1| - 3.1e-42 143.1 9.6 2e-14 53.6 0.0 9.5 9 1 0 9 9 9 5 PAS fold PAS_3 PF08447.12 gi|284163811|ref|YP_003402090.1| - 1.3e-35 121.6 1.8 2.1e-15 56.8 0.0 8.1 7 0 0 7 7 7 4 PAS fold HATPase_c PF02518.26 gi|284163811|ref|YP_003402090.1| - 9.2e-28 97.0 0.0 2.6e-27 95.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|284163811|ref|YP_003402090.1| - 9.9e-27 92.5 7.3 1.1e-09 38.1 0.0 8.3 8 0 0 8 8 8 2 PAS domain PAS_7 PF12860.7 gi|284163811|ref|YP_003402090.1| - 8e-12 45.3 13.6 0.003 17.7 0.1 8.8 9 1 0 9 9 9 2 PAS fold GAF_3 PF13492.6 gi|284163811|ref|YP_003402090.1| - 2.4e-11 44.1 0.3 7.6e-10 39.2 0.1 3.4 4 0 0 4 4 3 1 GAF domain GAF_2 PF13185.6 gi|284163811|ref|YP_003402090.1| - 3.3e-11 43.6 10.6 5.6e-11 42.9 1.2 5.1 6 1 0 6 6 3 1 GAF domain HisKA PF00512.25 gi|284163811|ref|YP_003402090.1| - 1.3e-09 38.0 0.1 1.3e-09 38.0 0.1 4.1 6 0 0 6 6 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|284163811|ref|YP_003402090.1| - 1.7e-09 38.2 0.1 5.7 7.6 0.0 7.3 8 0 0 8 8 8 2 PAS domain GAF PF01590.26 gi|284163811|ref|YP_003402090.1| - 3e-09 37.6 0.0 1.4e-07 32.2 0.1 3.7 4 0 0 4 4 4 1 GAF domain sCache_3_3 PF17202.4 gi|284163811|ref|YP_003402090.1| - 1.3e-06 28.8 0.0 0.38 11.2 0.0 5.3 5 0 0 5 5 5 1 Single cache domain 3 H_kinase_N PF12282.8 gi|284163811|ref|YP_003402090.1| - 8.9e-05 22.5 14.3 0.41 10.6 0.1 5.8 6 0 0 6 6 6 2 Signal transduction histidine kinase dCache_3 PF14827.6 gi|284163811|ref|YP_003402090.1| - 0.00046 19.9 0.4 6.1 6.4 0.0 4.7 5 0 0 5 5 5 1 Double sensory domain of two-component sensor kinase Cache_3-Cache_2 PF17201.4 gi|284163811|ref|YP_003402090.1| - 0.00071 18.9 0.0 1.3 8.2 0.0 3.6 3 0 0 3 3 3 1 Cache 3/Cache 2 fusion domain HATPase_c_5 PF14501.6 gi|284163811|ref|YP_003402090.1| - 0.0022 17.9 0.0 0.0048 16.8 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284163811|ref|YP_003402090.1| - 0.011 15.6 0.1 0.04 13.9 0.1 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_6 PF08348.11 gi|284163811|ref|YP_003402090.1| - 0.03 14.2 0.0 6 6.8 0.0 3.4 2 1 0 2 2 2 0 YheO-like PAS domain dCache_1 PF02743.18 gi|284163811|ref|YP_003402090.1| - 0.039 13.7 4.2 5.6 6.7 0.6 5.2 4 2 1 5 5 5 0 Cache domain DUF2959 PF11172.8 gi|284163811|ref|YP_003402090.1| - 0.057 13.6 1.0 18 5.4 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2959) CopC PF04234.12 gi|284163811|ref|YP_003402090.1| - 0.15 13.1 2.2 19 6.4 0.0 3.7 3 1 1 4 4 2 0 CopC domain CBS PF00571.28 gi|284163811|ref|YP_003402090.1| - 0.19 12.2 7.7 3.3 8.2 0.3 5.2 5 0 0 5 5 4 0 CBS domain Spore_III_AB PF09548.10 gi|284163811|ref|YP_003402090.1| - 0.27 11.3 4.2 6.3 6.9 0.0 4.2 4 1 1 5 5 5 0 Stage III sporulation protein AB (spore_III_AB) adh_short PF00106.25 gi|284163812|ref|YP_003402091.1| - 1.4e-27 96.4 0.0 7.3e-27 94.1 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284163812|ref|YP_003402091.1| - 1e-16 61.2 0.3 5.3e-16 58.9 0.3 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284163812|ref|YP_003402091.1| - 4.2e-07 30.0 0.1 7.9e-07 29.2 0.1 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284163812|ref|YP_003402091.1| - 6.3e-05 22.6 0.0 8.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|284163812|ref|YP_003402091.1| - 0.003 16.7 0.1 0.0044 16.2 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284163812|ref|YP_003402091.1| - 0.055 13.3 0.3 0.094 12.6 0.3 1.5 1 1 0 1 1 1 0 NAD(P)H-binding Pyr_redox_3 PF13738.6 gi|284163812|ref|YP_003402091.1| - 0.077 12.2 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.6 gi|284163814|ref|YP_003402093.1| - 0.0023 18.6 0.6 0.0048 17.6 0.2 1.8 1 1 1 2 2 2 1 4Fe-4S single cluster domain Response_reg PF00072.24 gi|284163816|ref|YP_003402095.1| - 2.1e-16 60.1 0.0 2.6e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Aldedh PF00171.22 gi|284163817|ref|YP_003402096.1| - 1.3e-158 528.3 0.1 1.5e-158 528.1 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF2484 PF10658.9 gi|284163818|ref|YP_003402097.1| - 0.34 11.2 4.7 1.2 9.5 0.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2484) DUF3040 PF11239.8 gi|284163818|ref|YP_003402097.1| - 0.75 10.1 6.4 0.75 10.1 1.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) PTS_2-RNA PF01885.16 gi|284163819|ref|YP_003402098.1| - 8.2e-27 94.4 0.0 9.8e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family QRPTase_C PF01729.19 gi|284163820|ref|YP_003402099.1| - 1.5e-54 184.3 1.5 1.9e-54 184.0 1.5 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|284163820|ref|YP_003402099.1| - 5.1e-20 71.3 0.3 9.4e-20 70.5 0.3 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain FAD_binding_2 PF00890.24 gi|284163821|ref|YP_003402100.1| - 2.1e-78 264.3 4.9 2.6e-78 264.0 4.9 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|284163821|ref|YP_003402100.1| - 3.4e-11 42.9 1.0 1.7e-05 24.2 0.9 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284163821|ref|YP_003402100.1| - 7.9e-10 38.4 1.1 1.5e-06 27.6 1.3 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|284163821|ref|YP_003402100.1| - 6.2e-09 35.9 4.0 4.8e-08 33.0 0.7 2.6 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|284163821|ref|YP_003402100.1| - 4.1e-07 29.7 9.4 2.4e-06 27.2 9.4 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284163821|ref|YP_003402100.1| - 5.6e-06 26.5 0.4 1.5e-05 25.2 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284163821|ref|YP_003402100.1| - 0.00012 20.9 0.8 0.0068 15.1 1.0 2.2 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|284163821|ref|YP_003402100.1| - 0.00044 19.6 0.1 0.00097 18.5 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Succ_DH_flav_C PF02910.20 gi|284163821|ref|YP_003402100.1| - 0.002 18.1 0.1 0.0048 16.9 0.1 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term FAD_binding_3 PF01494.19 gi|284163821|ref|YP_003402100.1| - 0.0031 16.8 0.2 0.008 15.5 0.2 1.7 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|284163821|ref|YP_003402100.1| - 0.038 14.5 0.1 0.12 12.9 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|284163821|ref|YP_003402100.1| - 0.067 12.2 0.5 0.11 11.6 0.5 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NadA PF02445.16 gi|284163822|ref|YP_003402101.1| - 1.1e-102 343.3 0.0 1.2e-102 343.1 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein GFO_IDH_MocA PF01408.22 gi|284163823|ref|YP_003402102.1| - 1.9e-24 86.8 0.1 3e-24 86.1 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284163823|ref|YP_003402102.1| - 9.2e-09 35.3 0.0 2.3e-08 34.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|284163823|ref|YP_003402102.1| - 0.021 15.2 0.0 0.041 14.3 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Bac_luciferase PF00296.20 gi|284163824|ref|YP_003402103.1| - 1.1e-66 225.4 11.9 1.4e-66 225.0 11.9 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase HalOD1 PF18545.1 gi|284163825|ref|YP_003402104.1| - 1.1e-20 73.7 1.1 1.3e-20 73.4 0.6 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|284163826|ref|YP_003402105.1| - 1.2e-15 57.1 0.1 7.6e-15 54.5 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain BAT PF15915.5 gi|284163826|ref|YP_003402105.1| - 1.2e-07 31.7 0.8 2e-07 31.0 0.8 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|284163826|ref|YP_003402105.1| - 0.0008 19.2 0.0 0.0024 17.7 0.0 1.9 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|284163826|ref|YP_003402105.1| - 0.0011 18.4 0.3 0.0027 17.2 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|284163826|ref|YP_003402105.1| - 0.0012 18.4 0.2 0.003 17.2 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|284163826|ref|YP_003402105.1| - 0.0023 17.7 0.4 0.0068 16.2 0.4 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284163826|ref|YP_003402105.1| - 0.0099 15.4 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284163826|ref|YP_003402105.1| - 0.039 13.8 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_50 PF18024.1 gi|284163826|ref|YP_003402105.1| - 0.059 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|284163826|ref|YP_003402105.1| - 0.092 12.7 0.0 0.26 11.3 0.0 1.8 1 1 0 1 1 1 0 MarR family HTH_6 PF01418.17 gi|284163826|ref|YP_003402105.1| - 0.098 12.7 0.1 3.4 7.7 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain, rpiR family HTH_AraC PF00165.23 gi|284163826|ref|YP_003402105.1| - 0.19 11.9 0.0 0.51 10.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family Amidohydro_3 PF07969.11 gi|284163827|ref|YP_003402106.1| - 7.4e-97 325.7 15.0 8.9e-97 325.5 15.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|284163827|ref|YP_003402106.1| - 3e-20 72.8 0.4 3e-15 56.4 0.0 2.4 2 0 0 2 2 2 2 Amidohydrolase family RecC_C PF17946.1 gi|284163827|ref|YP_003402106.1| - 0.044 13.6 0.1 0.085 12.6 0.1 1.5 1 0 0 1 1 1 0 RecC C-terminal domain Urease_alpha PF00449.20 gi|284163827|ref|YP_003402106.1| - 0.056 13.8 0.6 0.12 12.8 0.1 1.8 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain DUF3325 PF11804.8 gi|284163828|ref|YP_003402107.1| - 0.0015 18.7 1.4 0.0015 18.7 1.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3325) DUF2070 PF09843.9 gi|284163828|ref|YP_003402107.1| - 0.079 11.2 0.3 0.093 11.0 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2892 PF11127.8 gi|284163828|ref|YP_003402107.1| - 5 7.2 8.1 1 9.5 0.7 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF2892) HMG-CoA_red PF00368.18 gi|284163829|ref|YP_003402108.1| - 3.2e-128 427.8 6.8 3.6e-128 427.7 6.8 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase TerY_C PF15616.6 gi|284163831|ref|YP_003402110.1| - 0.079 13.1 0.3 0.12 12.5 0.3 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain HypA PF01155.19 gi|284163831|ref|YP_003402110.1| - 0.12 12.4 1.3 0.25 11.4 0.7 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|284163831|ref|YP_003402110.1| - 0.12 12.4 0.7 0.19 11.8 0.7 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain RNA_POL_M_15KD PF02150.16 gi|284163831|ref|YP_003402110.1| - 0.16 11.9 1.0 0.33 10.9 1.0 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-CSL PF05207.13 gi|284163831|ref|YP_003402110.1| - 0.19 11.5 2.3 4 7.2 0.4 2.6 2 0 0 2 2 2 0 CSL zinc finger TFIIS_C PF01096.18 gi|284163831|ref|YP_003402110.1| - 0.25 11.2 2.8 0.93 9.4 0.5 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|284163831|ref|YP_003402110.1| - 0.25 11.3 1.5 23 5.0 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284163831|ref|YP_003402110.1| - 0.46 10.6 2.5 1.2 9.3 2.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Cupin_2 PF07883.11 gi|284163832|ref|YP_003402111.1| - 2.3e-18 65.7 1.0 2.8e-18 65.4 1.0 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284163832|ref|YP_003402111.1| - 8.2e-06 25.8 0.7 1.1e-05 25.4 0.7 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|284163832|ref|YP_003402111.1| - 0.00093 19.1 0.0 0.0011 18.8 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|284163832|ref|YP_003402111.1| - 0.0022 17.8 0.0 0.0026 17.5 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_1 PF00190.22 gi|284163832|ref|YP_003402111.1| - 0.0028 17.3 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|284163832|ref|YP_003402111.1| - 0.0046 16.6 0.0 0.006 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|284163832|ref|YP_003402111.1| - 0.041 14.1 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Nramp PF01566.18 gi|284163833|ref|YP_003402112.1| - 7.7e-57 192.9 32.0 7.7e-57 192.9 32.0 1.5 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein adh_short PF00106.25 gi|284163834|ref|YP_003402113.1| - 2.6e-56 190.2 0.0 3e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284163834|ref|YP_003402113.1| - 4.8e-46 157.2 0.0 7e-46 156.7 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284163834|ref|YP_003402113.1| - 4.8e-10 39.6 0.0 7e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|284163834|ref|YP_003402113.1| - 1.6e-05 24.8 1.1 3e-05 24.0 0.1 1.9 2 0 0 2 2 2 1 NAD(P)H-binding Epimerase PF01370.21 gi|284163834|ref|YP_003402113.1| - 0.00012 21.6 0.1 0.00025 20.6 0.0 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|284163834|ref|YP_003402113.1| - 0.012 14.8 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein TrkA_N PF02254.18 gi|284163834|ref|YP_003402113.1| - 0.064 13.5 0.3 0.11 12.7 0.3 1.4 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|284163834|ref|YP_003402113.1| - 0.083 13.1 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain HD PF01966.22 gi|284163835|ref|YP_003402114.1| - 3.9e-11 43.2 1.0 6.4e-11 42.5 1.0 1.3 1 0 0 1 1 1 1 HD domain Acetyltransf_10 PF13673.7 gi|284163836|ref|YP_003402115.1| - 7.2e-27 93.8 0.4 8.3e-27 93.6 0.4 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284163836|ref|YP_003402115.1| - 4.1e-15 56.0 0.2 5e-15 55.8 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284163836|ref|YP_003402115.1| - 1.7e-13 50.7 0.1 2.7e-13 50.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 gi|284163836|ref|YP_003402115.1| - 1.2e-05 26.0 1.4 3.7e-05 24.4 0.9 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284163836|ref|YP_003402115.1| - 2.1e-05 24.6 0.8 0.00027 21.0 0.8 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284163836|ref|YP_003402115.1| - 0.00022 21.1 0.0 0.00032 20.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|284163836|ref|YP_003402115.1| - 0.002 18.3 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284163836|ref|YP_003402115.1| - 0.012 15.8 0.3 0.021 15.0 0.3 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NUDIX PF00293.28 gi|284163837|ref|YP_003402116.1| - 0.0082 16.2 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain HATPase_c PF02518.26 gi|284163838|ref|YP_003402117.1| - 7.3e-16 58.7 0.0 1.2e-15 58.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284163838|ref|YP_003402117.1| - 2.4e-06 27.5 0.0 5.3e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|284163838|ref|YP_003402117.1| - 0.0045 17.0 1.4 0.011 15.7 0.9 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|284163838|ref|YP_003402117.1| - 0.0046 16.8 0.0 0.011 15.6 0.0 1.5 1 1 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|284163838|ref|YP_003402117.1| - 0.011 15.3 2.9 0.015 14.9 0.0 2.4 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase DUF5353 PF17304.2 gi|284163838|ref|YP_003402117.1| - 0.26 11.0 4.9 2.1 8.1 0.4 2.9 1 1 1 2 2 2 0 Family of unknown function (DUF5353) Iso_dh PF00180.20 gi|284163839|ref|YP_003402118.1| - 3.2e-104 348.8 0.0 4.1e-104 348.5 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DZR PF12773.7 gi|284163840|ref|YP_003402119.1| - 0.00012 22.0 1.4 0.00013 22.0 1.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|284163840|ref|YP_003402119.1| - 0.00039 20.4 1.4 0.22 11.6 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|284163840|ref|YP_003402119.1| - 0.0016 18.3 1.8 0.5 10.3 0.1 2.2 2 0 0 2 2 2 2 Nudix N-terminal Prok-RING_1 PF14446.6 gi|284163840|ref|YP_003402119.1| - 0.0024 17.8 0.2 0.0027 17.6 0.2 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|284163840|ref|YP_003402119.1| - 0.0074 16.3 1.0 0.0089 16.0 1.0 1.1 1 0 0 1 1 1 1 zinc-ribbons zf-ribbon_3 PF13248.6 gi|284163840|ref|YP_003402119.1| - 0.0075 15.6 2.3 0.69 9.4 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284163840|ref|YP_003402119.1| - 0.0086 16.0 0.5 0.0088 15.9 0.5 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4776 PF16003.5 gi|284163840|ref|YP_003402119.1| - 0.014 14.4 1.8 0.015 14.4 1.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) DUF35_N PF12172.8 gi|284163840|ref|YP_003402119.1| - 0.039 13.9 4.1 0.22 11.5 0.9 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Auto_anti-p27 PF06677.12 gi|284163840|ref|YP_003402119.1| - 0.06 13.5 1.6 0.094 12.9 1.6 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|284163840|ref|YP_003402119.1| - 0.082 12.9 0.8 0.076 13.0 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|284163840|ref|YP_003402119.1| - 0.15 11.8 3.3 0.73 9.6 3.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-tcix PF14952.6 gi|284163840|ref|YP_003402119.1| - 0.42 10.3 3.6 3.9 7.2 0.2 2.1 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.10 gi|284163840|ref|YP_003402119.1| - 1.2 9.4 6.6 9 6.5 6.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Peptidase_M24 PF00557.24 gi|284163841|ref|YP_003402120.1| - 5e-43 147.2 0.3 6.3e-43 146.9 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 NOB1_Zn_bind PF08772.11 gi|284163842|ref|YP_003402121.1| - 0.0016 18.5 1.4 0.061 13.5 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like TFIIS_C PF01096.18 gi|284163842|ref|YP_003402121.1| - 0.0063 16.4 0.3 2.1 8.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) CpXC PF14353.6 gi|284163842|ref|YP_003402121.1| - 0.0069 16.4 0.9 0.0083 16.2 0.9 1.1 1 0 0 1 1 1 1 CpXC protein Rubredoxin_2 PF18073.1 gi|284163842|ref|YP_003402121.1| - 0.31 10.8 4.6 1.1 9.0 0.9 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zn-ribbon_14 PF16503.5 gi|284163842|ref|YP_003402121.1| - 1.8 8.2 5.3 0.24 10.9 1.1 1.8 3 0 0 3 3 3 0 Zinc-ribbon HIT PF01230.23 gi|284163843|ref|YP_003402122.1| - 1.8e-10 41.4 0.0 3.2e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|284163843|ref|YP_003402122.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|284163843|ref|YP_003402122.1| - 0.00071 20.0 0.0 0.0015 19.0 0.0 1.5 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding MS_channel PF00924.18 gi|284163844|ref|YP_003402123.1| - 8.4e-43 146.3 0.3 1e-42 146.0 0.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2062 PF09835.9 gi|284163844|ref|YP_003402123.1| - 0.018 14.9 4.7 0.039 13.8 1.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) DUF3995 PF13160.6 gi|284163844|ref|YP_003402123.1| - 0.27 11.6 6.4 0.46 10.9 6.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) DUF2512 PF10710.9 gi|284163844|ref|YP_003402123.1| - 1.4 8.6 4.2 6.9 6.3 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2512) ABC_export PF16962.5 gi|284163844|ref|YP_003402123.1| - 1.5 7.2 8.2 1.9 6.8 8.2 1.1 1 0 0 1 1 1 0 Putative ABC exporter Cupin_2 PF07883.11 gi|284163845|ref|YP_003402124.1| - 1.8e-14 53.2 1.1 2.7e-14 52.6 1.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 gi|284163845|ref|YP_003402124.1| - 6.1e-05 22.9 0.5 9.7e-05 22.2 0.5 1.4 1 1 0 1 1 1 1 ChrR Cupin-like domain cNMP_binding PF00027.29 gi|284163845|ref|YP_003402124.1| - 0.002 18.1 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 Cyclic nucleotide-binding domain Cupin_3 PF05899.12 gi|284163845|ref|YP_003402124.1| - 0.0033 17.1 0.4 0.0056 16.3 0.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|284163845|ref|YP_003402124.1| - 0.012 15.3 0.4 0.015 15.0 0.4 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase 3-HAO PF06052.12 gi|284163845|ref|YP_003402124.1| - 0.019 14.6 0.0 0.024 14.3 0.0 1.1 1 0 0 1 1 1 0 3-hydroxyanthranilic acid dioxygenase Auxin_BP PF02041.16 gi|284163845|ref|YP_003402124.1| - 0.1 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein Cupin_1 PF00190.22 gi|284163845|ref|YP_003402124.1| - 0.15 11.7 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 Cupin GST_N_3 PF13417.6 gi|284163846|ref|YP_003402125.1| - 1.7e-16 60.4 0.1 1.9e-16 60.2 0.1 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|284163846|ref|YP_003402125.1| - 8.3e-14 51.6 0.0 1.2e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|284163846|ref|YP_003402125.1| - 5.7e-08 33.0 0.0 6.4e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|284163846|ref|YP_003402125.1| - 0.00068 19.9 0.0 0.00076 19.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|284163846|ref|YP_003402125.1| - 0.0045 17.4 0.2 0.0061 16.9 0.2 1.5 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Rop PF01815.16 gi|284163846|ref|YP_003402125.1| - 0.074 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Rop protein AhpC-TSA PF00578.21 gi|284163847|ref|YP_003402126.1| - 2.6e-12 46.7 0.0 3.1e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284163847|ref|YP_003402126.1| - 0.00013 21.7 0.0 0.00074 19.2 0.0 2.0 1 1 0 1 1 1 1 Redoxin HTH_20 PF12840.7 gi|284163848|ref|YP_003402127.1| - 1.2e-07 31.6 0.3 2.1e-07 30.9 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284163848|ref|YP_003402127.1| - 0.00013 21.8 0.0 0.00018 21.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284163848|ref|YP_003402127.1| - 0.00024 20.8 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284163848|ref|YP_003402127.1| - 0.00089 18.8 0.0 0.0028 17.2 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.11 gi|284163848|ref|YP_003402127.1| - 0.01 15.6 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Sigma70_r4 PF04545.16 gi|284163848|ref|YP_003402127.1| - 0.084 12.4 0.0 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|284163848|ref|YP_003402127.1| - 0.093 13.1 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|284163848|ref|YP_003402127.1| - 0.093 12.6 0.1 0.17 11.8 0.1 1.6 1 1 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 gi|284163848|ref|YP_003402127.1| - 0.11 12.3 0.5 1 9.3 0.5 2.2 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Radical_SAM PF04055.21 gi|284163849|ref|YP_003402128.1| - 1.1e-21 78.0 0.0 2.4e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|284163849|ref|YP_003402128.1| - 2e-19 69.4 0.1 4.7e-19 68.2 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 T2SSF PF00482.23 gi|284163851|ref|YP_003402130.1| - 0.023 14.6 0.1 0.039 13.9 0.1 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F AI-2E_transport PF01594.16 gi|284163852|ref|YP_003402131.1| - 1.9e-49 168.6 27.9 2.2e-49 168.4 27.9 1.0 1 0 0 1 1 1 1 AI-2E family transporter Dpy19 PF10034.9 gi|284163852|ref|YP_003402131.1| - 0.11 10.7 3.0 0.19 9.9 3.0 1.3 1 0 0 1 1 1 0 Q-cell neuroblast polarisation DUF948 PF06103.11 gi|284163852|ref|YP_003402131.1| - 0.45 10.8 6.8 0.38 11.0 3.4 2.7 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF547 PF04784.14 gi|284163853|ref|YP_003402132.1| - 1.2e-24 86.7 0.0 1.6e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF547 DUF1508 PF07411.12 gi|284163854|ref|YP_003402133.1| - 9.1e-20 70.3 0.3 1.5e-19 69.6 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) NESP55 PF06390.12 gi|284163854|ref|YP_003402133.1| - 0.075 12.6 5.9 0.12 12.0 5.9 1.3 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) WXG100 PF06013.12 gi|284163855|ref|YP_003402134.1| - 0.33 11.2 0.1 0.33 11.2 0.1 3.0 4 1 0 4 4 4 0 Proteins of 100 residues with WXG TrkA_C PF02080.21 gi|284163856|ref|YP_003402135.1| - 1.4e-12 47.3 1.7 1.4e-12 47.3 1.7 1.7 2 0 0 2 2 2 1 TrkA-C domain HTH_24 PF13412.6 gi|284163856|ref|YP_003402135.1| - 1.7e-10 40.2 0.2 3.4e-10 39.3 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284163856|ref|YP_003402135.1| - 2.4e-09 36.9 0.3 2.4e-09 36.9 0.3 2.1 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284163856|ref|YP_003402135.1| - 2.7e-05 24.0 0.0 6.8e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|284163856|ref|YP_003402135.1| - 4.1e-05 23.5 0.0 0.00016 21.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284163856|ref|YP_003402135.1| - 0.0026 17.6 0.0 0.0047 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|284163856|ref|YP_003402135.1| - 0.0084 15.8 0.3 0.024 14.4 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|284163856|ref|YP_003402135.1| - 0.013 15.4 0.0 0.035 14.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HrcA_DNA-bdg PF03444.15 gi|284163856|ref|YP_003402135.1| - 0.021 14.4 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_36 PF13730.6 gi|284163856|ref|YP_003402135.1| - 0.033 14.1 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|284163856|ref|YP_003402135.1| - 0.099 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|284163856|ref|YP_003402135.1| - 0.15 12.2 0.1 0.61 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|284163856|ref|YP_003402135.1| - 0.19 11.5 0.1 0.19 11.5 0.1 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|284163856|ref|YP_003402135.1| - 0.2 11.8 0.3 0.74 10.0 0.0 2.1 3 0 0 3 3 3 0 Trp repressor protein Usp PF00582.26 gi|284163857|ref|YP_003402136.1| - 2.2e-13 50.9 0.7 2.8e-13 50.6 0.7 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.6 gi|284163858|ref|YP_003402137.1| - 2.1e-43 148.8 36.6 2.7e-43 148.4 36.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|284163858|ref|YP_003402137.1| - 1.2e-38 133.0 34.6 1.5e-38 132.6 34.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|284163858|ref|YP_003402137.1| - 1.2e-20 74.5 9.1 2.2e-11 44.4 1.1 3.3 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|284163858|ref|YP_003402137.1| - 0.0012 18.8 2.6 0.0044 17.1 2.6 2.0 1 0 0 1 1 1 1 C-terminus of AA_permease PNP_UDP_1 PF01048.20 gi|284163859|ref|YP_003402138.1| - 1.3e-45 155.5 3.2 1.6e-45 155.2 3.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HalOD1 PF18545.1 gi|284163860|ref|YP_003402139.1| - 1.9e-20 72.9 0.6 2.3e-20 72.6 0.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PfkB PF00294.24 gi|284163861|ref|YP_003402140.1| - 1.7e-49 168.8 6.0 2.5e-49 168.2 6.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF63 PF01889.17 gi|284163862|ref|YP_003402141.1| - 1e-21 78.4 9.3 1.6e-21 77.7 9.3 1.3 1 1 0 1 1 1 1 Membrane protein of unknown function DUF63 IF-2B PF01008.17 gi|284163863|ref|YP_003402142.1| - 5.1e-74 249.0 0.2 5.9e-74 248.8 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.23 gi|284163863|ref|YP_003402142.1| - 0.14 11.9 3.4 0.33 10.7 0.4 3.0 3 1 1 4 4 4 0 PEP-utilising enzyme, mobile domain DeoC PF01791.9 gi|284163864|ref|YP_003402143.1| - 5.8e-08 32.6 3.1 7.7e-08 32.2 3.1 1.2 1 0 0 1 1 1 1 DeoC/LacD family aldolase HPP PF04982.13 gi|284163865|ref|YP_003402144.1| - 1.2e-15 57.7 5.2 1.2e-15 57.7 5.2 2.0 3 0 0 3 3 3 1 HPP family Usp PF00582.26 gi|284163865|ref|YP_003402144.1| - 0.00029 21.4 0.2 0.0012 19.4 0.2 2.0 2 0 0 2 2 2 1 Universal stress protein family AzlD PF05437.12 gi|284163866|ref|YP_003402145.1| - 6.8e-14 51.8 7.5 8e-14 51.6 7.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.14 gi|284163867|ref|YP_003402146.1| - 2e-37 128.6 15.7 2e-37 128.6 15.7 1.9 2 0 0 2 2 2 1 AzlC protein Acetyltransf_6 PF13480.7 gi|284163867|ref|YP_003402146.1| - 2.3 8.4 4.9 0.38 10.9 0.3 2.0 2 1 1 3 3 3 0 Acetyltransferase (GNAT) domain P5CR_dimer PF14748.6 gi|284163867|ref|YP_003402146.1| - 9.2 6.6 11.3 1.7 9.0 3.7 3.1 2 2 1 3 3 3 0 Pyrroline-5-carboxylate reductase dimerisation HTH_20 PF12840.7 gi|284163868|ref|YP_003402147.1| - 7.6e-08 32.3 0.4 1.2e-07 31.6 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284163868|ref|YP_003402147.1| - 0.00072 19.4 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|284163868|ref|YP_003402147.1| - 0.0026 17.9 0.1 0.018 15.2 0.1 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrkA_N PF02254.18 gi|284163869|ref|YP_003402148.1| - 6.3e-28 97.4 0.4 1e-27 96.7 0.4 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|284163869|ref|YP_003402148.1| - 2.5e-12 46.6 4.6 2.5e-12 46.6 4.6 2.8 3 0 0 3 3 3 1 Ion channel Ion_trans PF00520.31 gi|284163869|ref|YP_003402148.1| - 0.00074 18.8 0.7 0.0012 18.2 0.7 1.2 1 0 0 1 1 1 1 Ion transport protein IRK PF01007.20 gi|284163869|ref|YP_003402148.1| - 0.01 15.7 0.1 0.019 14.8 0.1 1.3 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain Sacchrp_dh_NADP PF03435.18 gi|284163869|ref|YP_003402148.1| - 0.054 13.8 0.2 0.53 10.6 0.2 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PMT PF02366.18 gi|284163869|ref|YP_003402148.1| - 0.46 10.0 6.4 0.8 9.2 6.4 1.4 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF1269 PF06897.12 gi|284163869|ref|YP_003402148.1| - 9.5 6.6 8.0 0.43 10.9 0.3 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1269) TrkA_C PF02080.21 gi|284163870|ref|YP_003402149.1| - 0.00012 21.8 0.0 0.0006 19.6 0.0 2.3 1 0 0 1 1 1 1 TrkA-C domain 5TM-5TMR_LYT PF07694.12 gi|284163870|ref|YP_003402149.1| - 0.4 10.2 9.8 0.66 9.5 9.8 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.21 gi|284163871|ref|YP_003402150.1| - 4.4e-06 26.4 0.1 4.4e-06 26.4 0.1 2.0 2 0 0 2 2 2 1 TrkA-C domain ThiS PF02597.20 gi|284163872|ref|YP_003402151.1| - 9.3e-17 61.5 0.6 1e-16 61.3 0.6 1.0 1 0 0 1 1 1 1 ThiS family Flagellin_IN PF07196.13 gi|284163872|ref|YP_003402151.1| - 0.11 12.7 0.6 2.4 8.4 0.1 2.1 2 0 0 2 2 2 0 Flagellin hook IN motif Acetyltransf_1 PF00583.25 gi|284163874|ref|YP_003402153.1| - 7.4e-10 39.1 0.1 3.1e-09 37.1 0.0 2.1 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284163874|ref|YP_003402153.1| - 0.00027 20.9 0.0 0.00076 19.4 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284163874|ref|YP_003402153.1| - 0.00079 19.5 0.0 0.0019 18.3 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|284163874|ref|YP_003402153.1| - 0.00086 19.7 0.0 0.0016 18.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284163874|ref|YP_003402153.1| - 0.00098 19.2 0.0 0.31 11.1 0.0 3.0 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|284163874|ref|YP_003402153.1| - 0.0015 18.2 0.0 0.0031 17.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|284163874|ref|YP_003402153.1| - 0.018 15.2 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|284163874|ref|YP_003402153.1| - 0.018 15.2 6.5 0.037 14.2 0.6 2.8 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.20 gi|284163876|ref|YP_003402155.1| - 5.1e-60 202.3 0.1 1.3e-59 200.9 0.1 1.6 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|284163876|ref|YP_003402155.1| - 2.7e-26 92.0 0.0 1.6e-25 89.5 0.0 2.0 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|284163876|ref|YP_003402155.1| - 5.2e-17 60.9 0.0 9.1e-17 60.1 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain DUF2064 PF09837.9 gi|284163876|ref|YP_003402155.1| - 0.089 12.6 0.1 4.2 7.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) CbtB PF09489.10 gi|284163877|ref|YP_003402156.1| - 0.86 9.8 6.1 0.43 10.7 0.5 2.2 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) YiaAB PF05360.14 gi|284163877|ref|YP_003402156.1| - 1.2 9.4 9.5 1.7 9.0 0.4 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain DUF2975 PF11188.8 gi|284163878|ref|YP_003402157.1| - 0.0063 16.4 0.6 0.0073 16.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2975) TraQ PF09679.10 gi|284163878|ref|YP_003402157.1| - 0.08 12.9 0.1 0.095 12.6 0.1 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF2232 PF09991.9 gi|284163879|ref|YP_003402158.1| - 2.8 7.0 9.5 7.2 5.7 9.5 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2232) HTH_5 PF01022.20 gi|284163880|ref|YP_003402159.1| - 5.2e-20 71.0 0.1 6.6e-17 61.1 0.1 2.6 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284163880|ref|YP_003402159.1| - 5e-15 55.3 5.0 1.4e-12 47.5 0.3 2.6 3 0 0 3 3 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|284163880|ref|YP_003402159.1| - 2.2e-13 49.9 0.2 9.5e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284163880|ref|YP_003402159.1| - 4.7e-13 48.8 1.7 1.9e-08 34.1 0.2 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|284163880|ref|YP_003402159.1| - 5.8e-09 35.4 0.3 6.6e-07 28.8 0.4 3.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|284163880|ref|YP_003402159.1| - 2.5e-08 33.7 0.2 5.8e-05 23.0 0.1 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284163880|ref|YP_003402159.1| - 6.2e-08 32.5 0.1 2.2e-06 27.5 0.1 2.4 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|284163880|ref|YP_003402159.1| - 5.6e-07 29.8 0.0 0.0061 16.9 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.10 gi|284163880|ref|YP_003402159.1| - 1.8e-06 27.7 1.3 0.0091 15.8 0.1 3.1 3 1 0 3 3 2 2 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284163880|ref|YP_003402159.1| - 7.4e-06 26.4 0.4 0.00011 22.6 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|284163880|ref|YP_003402159.1| - 2.1e-05 24.4 0.1 4.7e-05 23.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.11 gi|284163880|ref|YP_003402159.1| - 3e-05 23.5 0.0 6.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF742 PF05331.11 gi|284163880|ref|YP_003402159.1| - 6.1e-05 22.8 0.0 0.095 12.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF742) PadR PF03551.14 gi|284163880|ref|YP_003402159.1| - 0.00023 21.0 0.1 0.0037 17.2 0.0 2.8 3 1 0 3 3 2 1 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.19 gi|284163880|ref|YP_003402159.1| - 0.00032 20.8 0.0 0.00083 19.5 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|284163880|ref|YP_003402159.1| - 0.00037 20.6 4.8 0.0025 17.9 0.0 2.9 3 1 0 3 3 2 1 DprA winged helix domain DUF2250 PF10007.9 gi|284163880|ref|YP_003402159.1| - 0.0011 19.1 0.0 0.1 12.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.16 gi|284163880|ref|YP_003402159.1| - 0.0012 18.6 0.0 0.009 15.8 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain GntR PF00392.21 gi|284163880|ref|YP_003402159.1| - 0.0022 17.6 0.2 0.2 11.3 0.0 2.8 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|284163880|ref|YP_003402159.1| - 0.0023 17.7 0.0 0.0069 16.2 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain DDRGK PF09756.9 gi|284163880|ref|YP_003402159.1| - 0.003 17.2 0.0 0.0063 16.1 0.0 1.5 1 0 0 1 1 1 1 DDRGK domain HTH_AsnC-type PF13404.6 gi|284163880|ref|YP_003402159.1| - 0.0051 16.6 0.3 0.069 13.0 0.1 3.0 3 1 0 3 3 2 1 AsnC-type helix-turn-helix domain FeoC PF09012.10 gi|284163880|ref|YP_003402159.1| - 0.0068 16.5 0.0 0.79 9.8 0.0 2.5 2 0 0 2 2 2 1 FeoC like transcriptional regulator HxlR PF01638.17 gi|284163880|ref|YP_003402159.1| - 0.0071 16.2 0.0 0.055 13.3 0.0 2.1 2 0 0 2 2 2 1 HxlR-like helix-turn-helix BLACT_WH PF17778.1 gi|284163880|ref|YP_003402159.1| - 0.0076 16.2 1.5 0.42 10.6 0.2 2.8 3 0 0 3 3 2 1 Beta-lactamase associated winged helix domain HTH_36 PF13730.6 gi|284163880|ref|YP_003402159.1| - 0.022 14.7 0.4 0.042 13.8 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain DUF2513 PF10711.9 gi|284163880|ref|YP_003402159.1| - 0.026 14.8 0.1 0.1 12.9 0.0 1.9 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Cdc6_C PF09079.11 gi|284163880|ref|YP_003402159.1| - 0.032 14.2 0.6 0.53 10.3 0.0 2.6 3 0 0 3 3 2 0 CDC6, C terminal winged helix domain RP-C PF03428.13 gi|284163880|ref|YP_003402159.1| - 0.038 13.6 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Replication protein C N-terminal domain EAP30 PF04157.16 gi|284163880|ref|YP_003402159.1| - 0.045 13.0 0.1 2.3 7.5 0.1 2.2 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_34 PF13601.6 gi|284163880|ref|YP_003402159.1| - 0.049 13.8 0.0 0.32 11.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain ArsR PF09824.9 gi|284163880|ref|YP_003402159.1| - 0.064 12.9 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 ArsR transcriptional regulator FaeA PF04703.12 gi|284163880|ref|YP_003402159.1| - 0.065 13.6 0.1 0.17 12.3 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_DeoR PF08220.12 gi|284163880|ref|YP_003402159.1| - 0.065 13.0 0.0 0.21 11.4 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.6 gi|284163880|ref|YP_003402159.1| - 0.072 13.1 0.0 3.7 7.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_38 PF13936.6 gi|284163880|ref|YP_003402159.1| - 0.074 12.8 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|284163880|ref|YP_003402159.1| - 0.093 12.7 1.3 2.6 8.1 0.0 2.7 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family IF2_N PF04760.15 gi|284163880|ref|YP_003402159.1| - 0.13 12.1 0.0 0.84 9.5 0.0 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Spc7 PF08317.11 gi|284163881|ref|YP_003402160.1| - 0.0065 15.4 4.1 0.0087 15.0 4.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Snapin_Pallidin PF14712.6 gi|284163881|ref|YP_003402160.1| - 0.074 13.5 2.0 0.14 12.6 2.0 1.3 1 0 0 1 1 1 0 Snapin/Pallidin ZapB PF06005.12 gi|284163881|ref|YP_003402160.1| - 0.4 11.2 6.4 9.8 6.7 6.0 2.2 1 1 1 2 2 2 0 Cell division protein ZapB DUF1515 PF07439.11 gi|284163881|ref|YP_003402160.1| - 0.48 10.5 7.6 1.1 9.3 1.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) ABC_tran_CTD PF16326.5 gi|284163881|ref|YP_003402160.1| - 3.6 7.9 8.9 8.1 6.8 0.2 2.4 2 1 0 2 2 2 0 ABC transporter C-terminal domain acVLRF1 PF18859.1 gi|284163883|ref|YP_003402162.1| - 7.5e-37 126.5 2.3 7.5e-37 126.5 2.3 2.3 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|284163883|ref|YP_003402162.1| - 1.9e-08 34.6 0.2 1.9e-08 34.6 0.2 1.9 2 0 0 2 2 1 1 Bacterial archaeo-eukaryotic release factor family 10 bZIP_2 PF07716.15 gi|284163883|ref|YP_003402162.1| - 1.8e-06 27.9 9.1 0.011 15.8 1.5 2.6 2 0 0 2 2 2 2 Basic region leucine zipper eRF1_2 PF03464.15 gi|284163883|ref|YP_003402162.1| - 0.00019 21.7 0.0 0.0005 20.4 0.0 1.7 2 0 0 2 2 1 1 eRF1 domain 2 DUF3450 PF11932.8 gi|284163883|ref|YP_003402162.1| - 0.0011 18.4 1.7 0.0019 17.6 1.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) Atg14 PF10186.9 gi|284163883|ref|YP_003402162.1| - 0.0016 17.6 1.2 0.0023 17.1 1.2 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 HOOK PF05622.12 gi|284163883|ref|YP_003402162.1| - 0.0025 16.1 4.1 0.0032 15.7 4.1 1.1 1 0 0 1 1 1 1 HOOK protein Troponin PF00992.20 gi|284163883|ref|YP_003402162.1| - 0.0059 16.9 6.8 0.011 16.0 6.8 1.4 1 0 0 1 1 1 1 Troponin ADIP PF11559.8 gi|284163883|ref|YP_003402162.1| - 0.007 16.5 4.9 0.012 15.7 4.9 1.3 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Jnk-SapK_ap_N PF09744.9 gi|284163883|ref|YP_003402162.1| - 0.008 16.4 9.0 0.017 15.4 9.0 1.6 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 Taxilin PF09728.9 gi|284163883|ref|YP_003402162.1| - 0.014 14.6 2.9 0.018 14.2 2.9 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein TPR_MLP1_2 PF07926.12 gi|284163883|ref|YP_003402162.1| - 0.017 15.2 5.7 0.043 13.9 5.7 1.6 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Paralemmin PF03285.15 gi|284163883|ref|YP_003402162.1| - 0.025 14.2 1.1 0.025 14.2 1.1 1.8 1 1 1 2 2 2 0 Paralemmin ERM PF00769.19 gi|284163883|ref|YP_003402162.1| - 0.026 14.3 7.4 0.043 13.6 7.4 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family GAS PF13851.6 gi|284163883|ref|YP_003402162.1| - 0.043 13.2 3.9 0.068 12.5 3.9 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Golgin_A5 PF09787.9 gi|284163883|ref|YP_003402162.1| - 0.045 13.2 1.6 0.063 12.7 1.6 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 Laminin_II PF06009.12 gi|284163883|ref|YP_003402162.1| - 0.046 13.7 0.8 0.085 12.9 0.8 1.3 1 0 0 1 1 1 0 Laminin Domain II DUF4407 PF14362.6 gi|284163883|ref|YP_003402162.1| - 0.049 13.0 3.8 0.094 12.0 3.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) EzrA PF06160.12 gi|284163883|ref|YP_003402162.1| - 0.053 11.7 1.5 0.081 11.1 1.5 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Leu_zip PF15294.6 gi|284163883|ref|YP_003402162.1| - 0.08 12.5 1.9 0.13 11.8 1.9 1.2 1 0 0 1 1 1 0 Leucine zipper KASH_CCD PF14662.6 gi|284163883|ref|YP_003402162.1| - 0.091 12.6 5.6 0.15 11.9 5.6 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH bZIP_1 PF00170.21 gi|284163883|ref|YP_003402162.1| - 0.1 12.7 10.2 2.2 8.5 2.3 2.5 1 1 1 2 2 2 0 bZIP transcription factor Transposase_24 PF03004.14 gi|284163883|ref|YP_003402162.1| - 0.11 12.6 0.3 0.19 11.8 0.3 1.4 1 0 0 1 1 1 0 Plant transposase (Ptta/En/Spm family) YlqD PF11068.8 gi|284163883|ref|YP_003402162.1| - 0.15 12.4 1.9 0.27 11.6 1.9 1.3 1 0 0 1 1 1 0 YlqD protein HSP70 PF00012.20 gi|284163883|ref|YP_003402162.1| - 0.16 10.1 1.9 4.9 5.2 0.0 2.0 2 0 0 2 2 2 0 Hsp70 protein TMF_DNA_bd PF12329.8 gi|284163883|ref|YP_003402162.1| - 0.21 11.6 8.9 0.49 10.4 8.9 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Fmp27_WPPW PF10359.9 gi|284163883|ref|YP_003402162.1| - 0.21 10.4 1.4 0.3 9.9 1.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1515 PF07439.11 gi|284163883|ref|YP_003402162.1| - 0.24 11.4 2.2 0.72 9.9 2.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) HAUS6_N PF14661.6 gi|284163883|ref|YP_003402162.1| - 0.27 10.8 1.4 0.39 10.3 1.4 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus FapA PF03961.13 gi|284163883|ref|YP_003402162.1| - 0.32 9.5 1.6 0.46 9.0 1.6 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A UPF0242 PF06785.11 gi|284163883|ref|YP_003402162.1| - 0.36 10.9 3.2 0.64 10.1 3.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF1664 PF07889.12 gi|284163883|ref|YP_003402162.1| - 0.46 10.5 1.6 0.58 10.2 0.6 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) ZapB PF06005.12 gi|284163883|ref|YP_003402162.1| - 0.59 10.6 12.1 6.8 7.2 0.9 2.4 1 1 1 2 2 2 0 Cell division protein ZapB TSC22 PF01166.18 gi|284163883|ref|YP_003402162.1| - 0.6 10.5 6.3 2.4 8.5 0.8 2.5 2 0 0 2 2 2 0 TSC-22/dip/bun family Tropomyosin_1 PF12718.7 gi|284163883|ref|YP_003402162.1| - 0.6 10.2 12.2 0.18 12.0 8.7 1.8 2 0 0 2 2 2 0 Tropomyosin like DUF1192 PF06698.11 gi|284163883|ref|YP_003402162.1| - 0.62 10.2 17.2 1.7 8.8 0.4 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1192) V_ATPase_I PF01496.19 gi|284163883|ref|YP_003402162.1| - 0.65 7.9 1.0 0.78 7.6 1.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Cluap1 PF10234.9 gi|284163883|ref|YP_003402162.1| - 0.74 9.2 5.1 1.1 8.6 5.1 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 APG6_N PF17675.1 gi|284163883|ref|YP_003402162.1| - 0.88 10.1 10.7 1.3 9.5 9.2 2.0 2 0 0 2 2 1 0 Apg6 coiled-coil region ABC_tran_CTD PF16326.5 gi|284163883|ref|YP_003402162.1| - 1.3 9.3 12.1 2.1 8.7 2.2 2.6 1 1 1 2 2 2 0 ABC transporter C-terminal domain Spc7 PF08317.11 gi|284163883|ref|YP_003402162.1| - 1.4 7.7 6.6 2.2 7.1 6.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Macoilin PF09726.9 gi|284163883|ref|YP_003402162.1| - 1.5 7.3 3.6 1.9 6.9 3.6 1.1 1 0 0 1 1 1 0 Macoilin family DivIC PF04977.15 gi|284163883|ref|YP_003402162.1| - 1.8 8.4 10.6 5.8 6.8 1.8 2.5 1 1 1 2 2 2 0 Septum formation initiator Prefoldin_2 PF01920.20 gi|284163883|ref|YP_003402162.1| - 1.9 8.5 7.7 1.6 8.7 0.6 2.4 1 1 1 2 2 2 0 Prefoldin subunit CLZ PF16526.5 gi|284163883|ref|YP_003402162.1| - 2.2 8.7 10.4 0.47 10.9 1.9 2.8 2 1 1 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF2205 PF10224.9 gi|284163883|ref|YP_003402162.1| - 2.7 8.1 6.0 6.3 6.9 0.2 2.6 2 0 0 2 2 2 0 Short coiled-coil protein Cep57_MT_bd PF06657.13 gi|284163883|ref|YP_003402162.1| - 3 8.4 7.1 46 4.6 5.8 2.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Nup188_C PF18378.1 gi|284163883|ref|YP_003402162.1| - 3.3 6.4 4.2 4.8 5.9 4.2 1.1 1 0 0 1 1 1 0 Nuclear pore protein NUP188 C-terminal domain YabA PF06156.13 gi|284163883|ref|YP_003402162.1| - 3.4 8.4 4.8 8.3 7.1 3.6 2.1 1 1 1 2 2 2 0 Initiation control protein YabA JIP_LZII PF16471.5 gi|284163883|ref|YP_003402162.1| - 3.4 7.9 8.0 5.1 7.3 4.1 2.5 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II Spc24 PF08286.11 gi|284163883|ref|YP_003402162.1| - 4.1 7.7 7.1 2.5 8.4 1.3 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 NYD-SP28_assoc PF14775.6 gi|284163883|ref|YP_003402162.1| - 5.8 7.1 7.2 0.41 10.8 1.1 2.2 2 0 0 2 2 1 0 Sperm tail C-terminal domain zf-FCS PF06467.14 gi|284163884|ref|YP_003402163.1| - 0.0011 18.8 0.6 0.004 17.1 0.6 1.7 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.16 gi|284163884|ref|YP_003402163.1| - 0.012 15.5 0.5 0.014 15.2 0.5 1.1 1 0 0 1 1 1 0 HIT zinc finger VATC PF18716.1 gi|284163884|ref|YP_003402163.1| - 0.17 11.8 2.6 1.2 9.1 2.6 1.9 1 1 0 1 1 1 0 Vms1-associating treble clef domain DUF1611 PF07755.11 gi|284163885|ref|YP_003402164.1| - 2.1e-70 236.1 0.6 2.8e-70 235.7 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|284163885|ref|YP_003402164.1| - 9.8e-30 102.7 0.1 4.2e-28 97.4 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|284163886|ref|YP_003402165.1| - 1.4e-41 142.5 0.2 2.6e-41 141.6 0.2 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284163886|ref|YP_003402165.1| - 8.7e-14 51.7 0.0 1.3e-13 51.2 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|284163886|ref|YP_003402165.1| - 0.0016 17.7 0.0 0.0034 16.6 0.0 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus HMGL-like PF00682.19 gi|284163886|ref|YP_003402165.1| - 0.094 12.3 0.0 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 HMGL-like Enolase_N PF03952.16 gi|284163886|ref|YP_003402165.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Enolase, N-terminal domain TAT_signal PF10518.9 gi|284163887|ref|YP_003402166.1| - 0.02 14.7 3.3 0.039 13.8 3.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TrmB PF01978.19 gi|284163888|ref|YP_003402167.1| - 0.00025 20.9 0.0 0.00061 19.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284163888|ref|YP_003402167.1| - 0.00079 19.3 1.2 0.0028 17.5 0.3 2.2 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.16 gi|284163888|ref|YP_003402167.1| - 0.0039 16.9 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain DUF308 PF03729.13 gi|284163888|ref|YP_003402167.1| - 0.0074 16.6 1.4 0.0074 16.6 1.4 1.8 2 0 0 2 2 2 1 Short repeat of unknown function (DUF308) DUF4423 PF14394.6 gi|284163888|ref|YP_003402167.1| - 0.055 13.2 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Phage_holin_3_6 PF07332.11 gi|284163888|ref|YP_003402167.1| - 0.12 12.4 3.3 0.29 11.2 0.7 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III FeoC PF09012.10 gi|284163888|ref|YP_003402167.1| - 0.19 11.8 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator AAA_33 PF13671.6 gi|284163889|ref|YP_003402168.1| - 5.5e-12 46.0 1.5 1.5e-10 41.4 1.5 2.5 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|284163889|ref|YP_003402168.1| - 4.9e-09 36.8 0.3 3.4e-07 30.9 0.3 2.8 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|284163889|ref|YP_003402168.1| - 8e-07 28.8 0.0 8.6e-06 25.4 0.0 2.0 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|284163889|ref|YP_003402168.1| - 8.9e-07 29.3 0.0 1.5e-06 28.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|284163889|ref|YP_003402168.1| - 1.8e-05 24.1 0.1 0.0018 17.6 0.0 2.1 1 1 1 2 2 2 1 Zeta toxin CPT PF07931.12 gi|284163889|ref|YP_003402168.1| - 2.5e-05 24.2 0.2 0.02 14.7 0.2 2.2 1 1 1 2 2 2 2 Chloramphenicol phosphotransferase-like protein AAA_16 PF13191.6 gi|284163889|ref|YP_003402168.1| - 2.9e-05 24.5 0.0 4e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|284163889|ref|YP_003402168.1| - 8.8e-05 22.9 0.0 0.00018 21.9 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|284163889|ref|YP_003402168.1| - 0.00026 21.0 0.0 0.0003 20.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|284163889|ref|YP_003402168.1| - 0.00089 19.0 0.1 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 Cytidylate kinase AAA_28 PF13521.6 gi|284163889|ref|YP_003402168.1| - 0.0017 18.6 0.1 0.0041 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|284163889|ref|YP_003402168.1| - 0.0022 18.5 0.0 0.0024 18.4 0.0 1.3 1 1 0 1 1 1 1 ABC transporter AAA_5 PF07728.14 gi|284163889|ref|YP_003402168.1| - 0.0031 17.5 0.0 0.0046 17.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|284163889|ref|YP_003402168.1| - 0.004 16.9 0.0 0.013 15.3 0.0 1.8 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.6 gi|284163889|ref|YP_003402168.1| - 0.0046 17.5 0.0 0.0058 17.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|284163889|ref|YP_003402168.1| - 0.0049 17.3 0.1 0.054 13.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|284163889|ref|YP_003402168.1| - 0.0056 16.4 0.0 0.011 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|284163889|ref|YP_003402168.1| - 0.009 15.9 0.0 0.12 12.3 0.0 2.1 1 1 1 2 2 2 1 Deoxynucleoside kinase APS_kinase PF01583.20 gi|284163889|ref|YP_003402168.1| - 0.0099 15.8 0.0 0.073 13.0 0.0 2.0 1 1 0 2 2 2 1 Adenylylsulphate kinase AAA_24 PF13479.6 gi|284163889|ref|YP_003402168.1| - 0.012 15.4 0.0 0.037 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|284163889|ref|YP_003402168.1| - 0.013 15.8 0.0 0.02 15.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|284163889|ref|YP_003402168.1| - 0.023 14.6 0.0 0.051 13.5 0.0 1.6 2 0 0 2 2 2 0 NTPase DUF2075 PF09848.9 gi|284163889|ref|YP_003402168.1| - 0.025 13.8 0.0 0.065 12.5 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) Mg_chelatase PF01078.21 gi|284163889|ref|YP_003402168.1| - 0.029 13.8 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|284163889|ref|YP_003402168.1| - 0.029 14.1 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Bac_rhamnosid PF05592.11 gi|284163889|ref|YP_003402168.1| - 0.031 14.2 0.3 0.057 13.4 0.3 1.5 1 1 0 1 1 1 0 Bacterial alpha-L-rhamnosidase concanavalin-like domain MobB PF03205.14 gi|284163889|ref|YP_003402168.1| - 0.035 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.12 gi|284163889|ref|YP_003402168.1| - 0.038 13.7 0.0 0.066 13.0 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|284163889|ref|YP_003402168.1| - 0.039 13.6 0.0 0.085 12.5 0.0 1.6 1 1 0 1 1 1 0 Thymidylate kinase ATP_bind_1 PF03029.17 gi|284163889|ref|YP_003402168.1| - 0.039 13.7 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|284163889|ref|YP_003402168.1| - 0.04 13.5 0.0 0.078 12.6 0.0 1.5 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|284163889|ref|YP_003402168.1| - 0.046 14.1 0.0 0.051 13.9 0.0 1.2 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|284163889|ref|YP_003402168.1| - 0.047 13.6 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_PrkA PF08298.11 gi|284163889|ref|YP_003402168.1| - 0.068 12.1 0.0 0.085 11.7 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain RsgA_GTPase PF03193.16 gi|284163889|ref|YP_003402168.1| - 0.087 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|284163889|ref|YP_003402168.1| - 0.094 11.8 0.0 0.17 10.9 0.0 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_lid_7 PF17867.1 gi|284163889|ref|YP_003402168.1| - 0.096 12.9 0.3 0.21 11.8 0.2 1.7 1 1 1 2 2 2 0 Midasin AAA lid domain SRP54 PF00448.22 gi|284163889|ref|YP_003402168.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ADK PF00406.22 gi|284163889|ref|YP_003402168.1| - 0.13 12.3 0.0 0.4 10.8 0.0 1.8 2 1 0 2 2 1 0 Adenylate kinase Peptidase_M15_2 PF05951.13 gi|284163889|ref|YP_003402168.1| - 0.14 11.9 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF882) Cytidylate_kin2 PF13189.6 gi|284163889|ref|YP_003402168.1| - 0.17 12.0 1.4 13 5.9 0.0 2.8 1 1 1 3 3 3 0 Cytidylate kinase-like family AAA_7 PF12775.7 gi|284163889|ref|YP_003402168.1| - 0.18 11.3 0.0 0.35 10.4 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region CarboxypepD_reg PF13620.6 gi|284163890|ref|YP_003402169.1| - 0.0041 17.3 1.3 0.032 14.5 0.1 2.5 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain NPP1 PF05630.11 gi|284163890|ref|YP_003402169.1| - 0.02 15.0 0.0 0.049 13.7 0.0 1.6 2 0 0 2 2 2 0 Necrosis inducing protein (NPP1) Apolipoprotein PF01442.18 gi|284163890|ref|YP_003402169.1| - 0.029 14.3 12.6 0.057 13.3 12.6 1.4 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain GCIP PF13324.6 gi|284163890|ref|YP_003402169.1| - 0.72 9.4 2.2 1.3 8.6 2.2 1.3 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting Cupin_2 PF07883.11 gi|284163891|ref|YP_003402170.1| - 1.1e-10 41.1 0.1 1.6e-10 40.5 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|284163891|ref|YP_003402170.1| - 0.0026 17.4 0.2 0.0055 16.4 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) DUF1579 PF07617.11 gi|284163891|ref|YP_003402170.1| - 0.013 15.4 0.1 0.015 15.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1579) Ectoine_synth PF06339.12 gi|284163891|ref|YP_003402170.1| - 0.02 15.1 0.0 0.022 15.0 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Pirin_C PF05726.13 gi|284163891|ref|YP_003402170.1| - 0.039 14.3 0.0 0.049 14.0 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain HutD PF05962.11 gi|284163891|ref|YP_003402170.1| - 0.081 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 HutD MannoseP_isomer PF01050.18 gi|284163891|ref|YP_003402170.1| - 0.094 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase DUF327 PF03885.13 gi|284163893|ref|YP_003402172.1| - 0.034 14.1 0.1 0.053 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) YtxH PF12732.7 gi|284163894|ref|YP_003402173.1| - 0.0015 19.1 0.1 0.0099 16.4 0.0 2.3 1 1 1 2 2 2 1 YtxH-like protein DUF2207 PF09972.9 gi|284163894|ref|YP_003402173.1| - 0.0017 17.2 0.3 0.71 8.6 0.1 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) DUF327 PF03885.13 gi|284163894|ref|YP_003402173.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) Aldedh PF00171.22 gi|284163894|ref|YP_003402173.1| - 0.081 11.4 0.0 0.16 10.5 0.0 1.4 2 0 0 2 2 2 0 Aldehyde dehydrogenase family TetR_C_28 PF17937.1 gi|284163895|ref|YP_003402174.1| - 0.033 14.7 0.4 0.075 13.5 0.4 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DUF3426 PF11906.8 gi|284163897|ref|YP_003402176.1| - 0.00026 21.2 0.0 0.00045 20.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) Alpha_GJ PF03229.13 gi|284163897|ref|YP_003402176.1| - 0.025 15.1 0.5 0.034 14.7 0.5 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J PadR PF03551.14 gi|284163898|ref|YP_003402177.1| - 0.059 13.3 0.0 0.088 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PspA_IM30 PF04012.12 gi|284163899|ref|YP_003402178.1| - 7.3e-35 120.5 32.3 7.3e-35 120.5 32.3 1.9 2 0 0 2 2 2 1 PspA/IM30 family Spc7 PF08317.11 gi|284163899|ref|YP_003402178.1| - 0.0024 16.8 24.1 0.0024 16.8 24.1 2.6 1 1 2 3 3 3 2 Spc7 kinetochore protein YabA PF06156.13 gi|284163899|ref|YP_003402178.1| - 0.0028 18.3 27.0 0.019 15.6 3.5 3.9 1 1 2 3 3 3 2 Initiation control protein YabA DUF1664 PF07889.12 gi|284163899|ref|YP_003402178.1| - 0.0047 17.0 7.6 0.0047 17.0 7.6 3.3 2 2 2 4 4 4 1 Protein of unknown function (DUF1664) Snf7 PF03357.21 gi|284163899|ref|YP_003402178.1| - 0.063 12.9 61.3 0.47 10.0 39.0 3.7 1 1 1 2 2 2 0 Snf7 DUF3535 PF12054.8 gi|284163899|ref|YP_003402178.1| - 0.085 12.1 9.0 0.15 11.3 9.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) CENP-F_leu_zip PF10473.9 gi|284163899|ref|YP_003402178.1| - 0.15 12.1 48.4 0.51 10.4 18.3 4.3 2 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.11 gi|284163899|ref|YP_003402178.1| - 0.15 10.0 12.2 0.19 9.6 12.2 1.1 1 0 0 1 1 1 0 Prominin AAA_13 PF13166.6 gi|284163899|ref|YP_003402178.1| - 0.7 8.5 27.3 0.42 9.2 25.2 1.5 1 1 0 1 1 1 0 AAA domain SHE3 PF17078.5 gi|284163899|ref|YP_003402178.1| - 0.97 9.1 26.9 4.4 6.9 26.2 2.5 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 LXG PF04740.12 gi|284163899|ref|YP_003402178.1| - 1.7 8.3 25.5 3.3 7.4 2.3 3.1 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF3138 PF11336.8 gi|284163899|ref|YP_003402178.1| - 1.9 7.0 4.3 3.4 6.2 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) FOXP-CC PF16159.5 gi|284163899|ref|YP_003402178.1| - 3 8.6 9.7 3.6 8.3 0.5 2.8 2 0 0 2 2 2 0 FOXP coiled-coil domain ERM PF00769.19 gi|284163899|ref|YP_003402178.1| - 3.1 7.5 48.5 0.057 13.2 40.0 1.9 1 1 0 2 2 2 0 Ezrin/radixin/moesin family COG6 PF06419.11 gi|284163899|ref|YP_003402178.1| - 3.5 5.7 21.5 0.048 11.9 1.1 2.9 1 1 1 3 3 3 0 Conserved oligomeric complex COG6 Dor1 PF04124.12 gi|284163899|ref|YP_003402178.1| - 4.3 5.9 17.5 1.3 7.6 10.0 2.2 1 1 1 2 2 2 0 Dor1-like family FapA PF03961.13 gi|284163899|ref|YP_003402178.1| - 5.9 5.4 25.3 8.5 4.9 9.1 2.8 1 1 2 3 3 3 0 Flagellar Assembly Protein A BLOC1_2 PF10046.9 gi|284163899|ref|YP_003402178.1| - 6.1 7.2 30.1 0.97 9.8 0.6 4.6 2 1 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliD_N PF02465.18 gi|284163899|ref|YP_003402178.1| - 6.6 7.5 18.7 1.9 9.2 8.5 3.4 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus DUF1320 PF07030.12 gi|284163899|ref|YP_003402178.1| - 7.1 6.8 11.3 0.57 10.3 0.2 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF1320) DUF3584 PF12128.8 gi|284163899|ref|YP_003402178.1| - 7.9 3.8 38.1 1.7 6.0 34.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) YlqD PF11068.8 gi|284163899|ref|YP_003402178.1| - 8.7 6.7 35.1 0.35 11.3 12.4 3.7 1 1 2 3 3 3 0 YlqD protein ALMT PF11744.8 gi|284163899|ref|YP_003402178.1| - 9.3 4.9 13.7 13 4.5 13.7 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter DLH PF01738.18 gi|284163900|ref|YP_003402179.1| - 9.1e-05 22.1 0.0 0.00012 21.7 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|284163900|ref|YP_003402179.1| - 0.0001 22.0 0.0 0.00013 21.7 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|284163900|ref|YP_003402179.1| - 0.00054 19.3 0.0 0.4 9.9 0.0 2.4 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|284163900|ref|YP_003402179.1| - 0.0023 18.1 0.1 0.16 12.1 0.3 2.3 1 1 1 2 2 2 1 Thioesterase domain Abhydrolase_6 PF12697.7 gi|284163900|ref|YP_003402179.1| - 0.007 17.0 10.5 0.021 15.5 10.5 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284163900|ref|YP_003402179.1| - 0.011 15.4 0.0 0.026 14.2 0.0 1.6 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_3 PF07859.13 gi|284163900|ref|YP_003402179.1| - 0.053 13.4 0.2 0.099 12.5 0.2 1.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold Lipase_3 PF01764.25 gi|284163900|ref|YP_003402179.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) FRG PF08867.11 gi|284163901|ref|YP_003402180.1| - 8.1e-21 74.8 0.0 1.4e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 FRG domain CAP PF00188.26 gi|284163902|ref|YP_003402181.1| - 5.4e-20 72.5 0.2 9.6e-18 65.2 0.2 2.5 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DNA_pol_B_thumb PF14791.6 gi|284163902|ref|YP_003402181.1| - 0.84 9.8 0.0 0.84 9.8 0.0 2.4 2 1 0 2 2 2 0 DNA polymerase beta thumb Zip PF02535.22 gi|284163902|ref|YP_003402181.1| - 1.3 8.2 4.5 1.9 7.6 4.5 1.4 1 0 0 1 1 1 0 ZIP Zinc transporter DUF87 PF01935.17 gi|284163903|ref|YP_003402182.1| - 3.6e-08 33.8 0.0 6.7e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|284163903|ref|YP_003402182.1| - 1.2e-06 27.5 0.2 0.0018 16.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|284163903|ref|YP_003402182.1| - 0.0007 18.6 0.0 0.094 11.6 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|284163903|ref|YP_003402182.1| - 0.0066 15.4 0.0 0.01 14.7 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|284163903|ref|YP_003402182.1| - 0.014 15.7 0.0 0.079 13.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain HAS-barrel PF09378.10 gi|284163903|ref|YP_003402182.1| - 0.018 15.2 0.0 0.059 13.5 0.0 1.9 2 0 0 2 2 2 0 HAS barrel domain T2SSE PF00437.20 gi|284163903|ref|YP_003402182.1| - 0.031 13.3 0.0 0.059 12.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.15 gi|284163903|ref|YP_003402182.1| - 0.041 13.9 0.0 8.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|284163903|ref|YP_003402182.1| - 0.07 12.5 0.0 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.12 gi|284163903|ref|YP_003402182.1| - 0.1 11.9 0.0 0.22 10.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin HTH_20 PF12840.7 gi|284163904|ref|YP_003402183.1| - 1.3e-06 28.4 13.2 5.5e-05 23.1 1.6 3.1 3 2 0 3 3 3 2 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284163904|ref|YP_003402183.1| - 0.31 10.9 5.9 21 5.0 0.4 3.6 4 0 0 4 4 4 0 IclR helix-turn-helix domain BLUF PF04940.12 gi|284163905|ref|YP_003402184.1| - 0.028 14.5 0.1 0.048 13.8 0.1 1.4 1 0 0 1 1 1 0 Sensors of blue-light using FAD Cohesin PF00963.18 gi|284163906|ref|YP_003402185.1| - 0.00029 21.1 0.0 0.0007 19.9 0.0 1.5 1 1 0 1 1 1 1 Cohesin domain CbtB PF09489.10 gi|284163906|ref|YP_003402185.1| - 2.1 8.5 4.1 2.4 8.4 1.2 2.3 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) 5_nucleotid_C PF02872.18 gi|284163907|ref|YP_003402186.1| - 3.5e-25 89.0 0.0 7.3e-25 88.0 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Gram_pos_anchor PF00746.21 gi|284163907|ref|YP_003402186.1| - 0.17 11.9 0.1 8.7 6.4 0.0 2.4 2 0 0 2 2 2 0 LPXTG cell wall anchor motif NurA PF09376.10 gi|284163908|ref|YP_003402187.1| - 2.1e-14 53.8 0.0 3.1e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 NurA domain TF_Zn_Ribbon PF08271.12 gi|284163909|ref|YP_003402188.1| - 0.0011 18.4 0.4 0.71 9.4 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding ADK_lid PF05191.14 gi|284163909|ref|YP_003402188.1| - 0.0016 18.4 2.8 0.28 11.2 0.1 2.1 1 1 0 1 1 1 1 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.6 gi|284163909|ref|YP_003402188.1| - 0.0033 17.9 1.8 1.5 9.4 0.4 2.2 1 1 1 2 2 2 2 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.10 gi|284163909|ref|YP_003402188.1| - 0.0058 16.3 1.1 1.8 8.4 0.1 2.2 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-C2H2 PF00096.26 gi|284163909|ref|YP_003402188.1| - 0.008 16.6 1.4 3.3 8.3 0.2 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|284163909|ref|YP_003402188.1| - 0.019 15.1 1.7 0.041 14.0 1.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF3039 PF11238.8 gi|284163909|ref|YP_003402188.1| - 0.036 13.8 0.3 0.056 13.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) Lar_restr_allev PF14354.6 gi|284163909|ref|YP_003402188.1| - 0.037 14.4 0.5 1.5 9.3 0.5 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|284163909|ref|YP_003402188.1| - 0.059 13.0 0.6 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|284163909|ref|YP_003402188.1| - 0.066 13.1 1.3 0.099 12.6 1.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|284163909|ref|YP_003402188.1| - 0.11 11.9 1.3 12 5.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|284163909|ref|YP_003402188.1| - 0.16 12.0 0.1 0.18 11.8 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-CGNR PF11706.8 gi|284163909|ref|YP_003402188.1| - 0.16 11.8 2.2 0.31 10.9 2.2 1.5 1 0 0 1 1 1 0 CGNR zinc finger Rtf2 PF04641.12 gi|284163909|ref|YP_003402188.1| - 0.17 11.2 0.0 0.18 11.2 0.0 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger zf-trcl PF13451.6 gi|284163909|ref|YP_003402188.1| - 0.24 11.3 2.3 11 6.0 0.2 2.3 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|284163909|ref|YP_003402188.1| - 0.25 12.3 0.7 27 6.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|284163909|ref|YP_003402188.1| - 0.32 10.7 1.9 9.9 6.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-LYAR PF08790.11 gi|284163909|ref|YP_003402188.1| - 0.38 10.7 3.0 8.1 6.5 0.2 2.2 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger DUF393 PF04134.12 gi|284163912|ref|YP_003402191.1| - 1.5e-35 122.9 0.1 1.8e-35 122.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 VKG_Carbox PF05090.14 gi|284163913|ref|YP_003402192.1| - 0.0015 17.4 0.0 0.0023 16.9 0.0 1.2 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase iPGM_N PF06415.13 gi|284163914|ref|YP_003402193.1| - 3.3e-79 265.3 1.8 4.4e-79 264.9 1.8 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|284163914|ref|YP_003402193.1| - 1.8e-73 246.9 0.5 2.1e-73 246.8 0.5 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|284163914|ref|YP_003402193.1| - 5.9e-10 39.3 2.2 1.8e-08 34.4 0.2 3.0 3 0 0 3 3 3 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|284163914|ref|YP_003402193.1| - 6.6e-06 25.7 0.2 6.1e-05 22.6 0.1 2.5 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.12 gi|284163914|ref|YP_003402193.1| - 0.001 19.2 0.2 0.0026 17.9 0.2 1.6 1 0 0 1 1 1 1 PglZ domain Flavodoxin_2 PF02525.17 gi|284163915|ref|YP_003402194.1| - 2.1e-37 128.8 0.0 3.2e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold UbiA PF01040.18 gi|284163915|ref|YP_003402194.1| - 6.9e-19 68.1 20.2 1e-18 67.6 20.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family FMN_red PF03358.15 gi|284163915|ref|YP_003402194.1| - 2.1e-15 56.8 0.0 5e-15 55.6 0.0 1.6 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF839 PF05787.13 gi|284163917|ref|YP_003402196.1| - 4.6e-24 85.5 2.0 2.2e-19 70.0 0.4 3.7 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) Dockerin_1 PF00404.18 gi|284163917|ref|YP_003402196.1| - 0.00037 20.6 3.2 0.00037 20.6 3.2 2.2 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_7 PF13499.6 gi|284163917|ref|YP_003402196.1| - 0.024 15.1 3.9 0.045 14.2 2.2 2.4 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_6 PF13405.6 gi|284163917|ref|YP_003402196.1| - 0.04 13.8 5.7 0.53 10.3 0.3 3.3 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|284163917|ref|YP_003402196.1| - 0.092 12.3 7.2 3 7.6 0.4 3.5 3 0 0 3 3 3 0 EF hand TAT_signal PF10518.9 gi|284163917|ref|YP_003402196.1| - 1.7 8.6 6.5 3.1 7.8 6.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF839 PF05787.13 gi|284163918|ref|YP_003402197.1| - 2e-23 83.4 0.9 3e-20 72.9 0.3 3.6 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) Dockerin_1 PF00404.18 gi|284163918|ref|YP_003402197.1| - 0.00018 21.6 3.0 0.00018 21.6 3.0 2.2 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|284163918|ref|YP_003402197.1| - 0.053 13.5 6.2 0.49 10.5 0.4 3.2 2 0 0 2 2 2 0 EF-hand domain EF-hand_7 PF13499.6 gi|284163918|ref|YP_003402197.1| - 0.14 12.6 6.1 0.06 13.8 2.6 2.3 2 0 0 2 2 2 0 EF-hand domain pair TAT_signal PF10518.9 gi|284163918|ref|YP_003402197.1| - 0.89 9.5 4.8 1.8 8.5 4.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CENP-B_dimeris PF09026.10 gi|284163919|ref|YP_003402198.1| - 0.0015 18.9 4.8 0.0034 17.7 4.8 1.5 1 0 0 1 1 1 1 Centromere protein B dimerisation domain SSURE PF11966.8 gi|284163919|ref|YP_003402198.1| - 0.067 12.9 0.3 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 Fibronectin-binding repeat Cys_Met_Meta_PP PF01053.20 gi|284163920|ref|YP_003402199.1| - 7.6e-134 446.0 0.0 9.2e-134 445.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|284163920|ref|YP_003402199.1| - 2.7e-08 33.4 0.0 3.9e-08 32.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|284163920|ref|YP_003402199.1| - 3e-06 26.8 0.5 1.2e-05 24.9 0.3 1.8 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|284163920|ref|YP_003402199.1| - 0.013 14.8 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|284163920|ref|YP_003402199.1| - 0.027 13.4 0.0 0.056 12.4 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class-V SepSecS PF05889.13 gi|284163920|ref|YP_003402199.1| - 0.075 11.7 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS DUF2106 PF09879.9 gi|284163922|ref|YP_003402201.1| - 0.16 11.5 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) AsnC_trans_reg PF01037.21 gi|284163924|ref|YP_003402203.1| - 1.7e-13 50.3 0.1 1.9e-13 50.2 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain FtsX_ECD PF18075.1 gi|284163924|ref|YP_003402203.1| - 0.064 13.9 0.2 2.3 8.9 0.0 2.1 1 1 0 2 2 2 0 FtsX extracellular domain TrkA_N PF02254.18 gi|284163925|ref|YP_003402204.1| - 2.6e-26 92.2 0.2 4.1e-26 91.5 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|284163925|ref|YP_003402204.1| - 6.6e-11 41.9 1.1 8.3e-11 41.6 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|284163925|ref|YP_003402204.1| - 2.6e-07 30.4 0.0 4.7e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|284163925|ref|YP_003402204.1| - 2.6e-05 23.6 0.0 4.2e-05 23.0 0.0 1.4 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|284163925|ref|YP_003402204.1| - 3.1e-05 24.4 0.1 6.2e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|284163925|ref|YP_003402204.1| - 6.1e-05 22.4 0.0 0.00016 21.0 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|284163925|ref|YP_003402204.1| - 0.00011 22.6 0.0 0.00017 22.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|284163925|ref|YP_003402204.1| - 0.00015 21.7 0.0 0.00026 20.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|284163925|ref|YP_003402204.1| - 0.00017 21.6 1.2 0.00022 21.2 0.1 1.8 3 0 0 3 3 3 1 NAD(P)H-binding ApbA PF02558.16 gi|284163925|ref|YP_003402204.1| - 0.00024 20.8 0.0 0.00043 20.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|284163925|ref|YP_003402204.1| - 0.00072 19.2 0.1 0.0011 18.6 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284163925|ref|YP_003402204.1| - 0.0009 19.4 0.0 0.0022 18.2 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|284163925|ref|YP_003402204.1| - 0.0033 17.7 0.1 0.0063 16.8 0.1 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_2 PF00890.24 gi|284163925|ref|YP_003402204.1| - 0.0035 16.5 0.1 0.26 10.3 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain IlvN PF07991.12 gi|284163925|ref|YP_003402204.1| - 0.0051 16.4 0.0 0.0096 15.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|284163925|ref|YP_003402204.1| - 0.0053 16.1 0.1 0.0078 15.5 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|284163925|ref|YP_003402204.1| - 0.0075 16.5 0.0 0.022 14.9 0.0 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284163925|ref|YP_003402204.1| - 0.0093 15.3 0.0 0.053 12.9 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|284163925|ref|YP_003402204.1| - 0.01 16.3 0.0 0.02 15.4 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain Epimerase PF01370.21 gi|284163925|ref|YP_003402204.1| - 0.011 15.2 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|284163925|ref|YP_003402204.1| - 0.023 15.3 0.1 0.057 14.0 0.0 1.7 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|284163925|ref|YP_003402204.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|284163925|ref|YP_003402204.1| - 0.025 14.6 0.0 0.049 13.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.14 gi|284163925|ref|YP_003402204.1| - 0.047 12.4 0.0 0.066 11.9 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.17 gi|284163925|ref|YP_003402204.1| - 0.064 12.5 0.0 0.088 12.0 0.0 1.3 1 0 0 1 1 1 0 Thi4 family Glyco_trans_4_4 PF13579.6 gi|284163925|ref|YP_003402204.1| - 0.12 12.9 0.7 0.26 11.7 0.7 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Pyr_redox_3 PF13738.6 gi|284163925|ref|YP_003402204.1| - 0.16 11.2 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AsnC_trans_reg PF01037.21 gi|284163926|ref|YP_003402205.1| - 2.2e-07 30.7 0.0 2.5e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain VESA1_N PF12785.7 gi|284163926|ref|YP_003402205.1| - 0.12 11.4 0.1 0.12 11.3 0.1 1.0 1 0 0 1 1 1 0 Variant erythrocyte surface antigen-1 CitMHS PF03600.16 gi|284163927|ref|YP_003402206.1| - 9.6e-66 222.0 1.1 1.3e-65 221.6 0.4 1.6 1 1 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 gi|284163927|ref|YP_003402206.1| - 3e-21 76.0 37.0 4.4e-16 59.0 13.9 3.1 2 1 0 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|284163927|ref|YP_003402206.1| - 7.1e-20 70.6 6.5 6.2e-10 38.8 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain APH PF01636.23 gi|284163928|ref|YP_003402207.1| - 3e-15 56.8 0.8 4.5e-15 56.2 0.6 1.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|284163928|ref|YP_003402207.1| - 0.00076 18.8 0.0 0.0032 16.7 0.0 1.9 1 1 0 1 1 1 1 Fructosamine kinase Thymidylate_kin PF02223.17 gi|284163929|ref|YP_003402208.1| - 1.1e-35 123.0 0.0 1.5e-35 122.5 0.0 1.2 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|284163929|ref|YP_003402208.1| - 2e-07 31.3 0.0 3.4e-07 30.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|284163929|ref|YP_003402208.1| - 2.7e-07 30.7 0.0 1.1e-06 28.7 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|284163929|ref|YP_003402208.1| - 5.7e-07 30.1 0.0 1.4e-06 28.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|284163929|ref|YP_003402208.1| - 0.0016 18.9 0.0 0.037 14.5 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|284163929|ref|YP_003402208.1| - 0.0058 16.9 0.2 0.008 16.4 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284163929|ref|YP_003402208.1| - 0.03 14.7 0.1 0.044 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF3179 PF11376.8 gi|284163929|ref|YP_003402208.1| - 0.072 12.5 0.1 0.087 12.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3179) AAA_5 PF07728.14 gi|284163929|ref|YP_003402208.1| - 0.073 13.1 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|284163929|ref|YP_003402208.1| - 0.076 13.3 0.0 0.62 10.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain NAD_binding_10 PF13460.6 gi|284163930|ref|YP_003402209.1| - 8.8e-28 97.4 0.0 1.3e-27 96.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|284163930|ref|YP_003402209.1| - 1.1e-16 61.0 0.0 2e-15 56.9 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284163930|ref|YP_003402209.1| - 8.7e-11 41.3 0.0 4e-09 35.9 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284163930|ref|YP_003402209.1| - 1.5e-10 40.7 0.0 4.3e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.13 gi|284163930|ref|YP_003402209.1| - 2.1e-10 40.5 0.0 2.6e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|284163930|ref|YP_003402209.1| - 7.2e-06 25.6 0.0 1.4e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|284163930|ref|YP_003402209.1| - 3.5e-05 23.1 0.0 0.11 11.7 0.0 2.4 1 1 2 3 3 3 2 Male sterility protein NAD_binding_2 PF03446.15 gi|284163930|ref|YP_003402209.1| - 0.00056 20.1 0.0 0.0013 18.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.10 gi|284163930|ref|YP_003402209.1| - 0.0015 18.5 0.0 0.027 14.4 0.0 2.1 2 0 0 2 2 2 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|284163930|ref|YP_003402209.1| - 0.0036 17.6 0.0 0.0066 16.7 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|284163930|ref|YP_003402209.1| - 0.024 14.1 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Polysacc_synt_2 PF02719.15 gi|284163930|ref|YP_003402209.1| - 0.026 13.7 0.1 0.9 8.6 0.1 2.2 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein DapB_N PF01113.20 gi|284163930|ref|YP_003402209.1| - 0.033 14.3 0.0 0.065 13.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Glyco_transf_4 PF13439.6 gi|284163930|ref|YP_003402209.1| - 0.052 13.5 0.0 0.083 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Pyr_redox PF00070.27 gi|284163930|ref|YP_003402209.1| - 0.15 12.7 0.0 0.41 11.2 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Tubulin PF00091.25 gi|284163931|ref|YP_003402210.1| - 1.2e-27 97.4 0.0 2.2e-27 96.5 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|284163931|ref|YP_003402210.1| - 0.029 13.5 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 Tubulin like Endotoxin_C2 PF18449.1 gi|284163931|ref|YP_003402210.1| - 0.11 12.9 1.4 0.18 12.1 0.1 2.0 2 0 0 2 2 2 0 Delta endotoxin Mu-like_Pro PF10123.9 gi|284163931|ref|YP_003402210.1| - 0.15 11.6 0.2 0.76 9.3 0.0 1.9 2 0 0 2 2 2 0 Mu-like prophage I protein CofC PF01983.16 gi|284163932|ref|YP_003402211.1| - 4.5e-34 117.5 0.0 6.4e-34 117.0 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|284163932|ref|YP_003402211.1| - 0.13 12.6 7.0 0.29 11.5 6.9 1.5 1 1 0 1 1 1 0 MobA-like NTP transferase domain Radical_SAM PF04055.21 gi|284163934|ref|YP_003402213.1| - 2.4e-12 47.5 0.1 4.4e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily GvpH PF05455.11 gi|284163935|ref|YP_003402214.1| - 1.3e-06 28.6 0.5 1.8e-06 28.1 0.5 1.5 1 1 0 1 1 1 1 GvpH ArsA_HSP20 PF17886.1 gi|284163935|ref|YP_003402214.1| - 0.0098 15.4 0.1 0.083 12.5 0.1 2.1 1 1 0 1 1 1 1 HSP20-like domain found in ArsA Radical_SAM PF04055.21 gi|284163936|ref|YP_003402215.1| - 2.3e-17 63.9 0.1 5.2e-17 62.7 0.1 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Abhydrolase_6 PF12697.7 gi|284163937|ref|YP_003402216.1| - 3.4e-25 89.9 12.1 4e-25 89.7 12.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284163937|ref|YP_003402216.1| - 1.6e-22 80.4 0.0 3.8e-20 72.6 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284163937|ref|YP_003402216.1| - 2.8e-11 43.1 0.0 5.3e-11 42.2 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|284163937|ref|YP_003402216.1| - 0.00027 21.2 0.0 0.0004 20.6 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain DLH PF01738.18 gi|284163937|ref|YP_003402216.1| - 0.0023 17.5 0.0 0.018 14.6 0.0 1.9 2 0 0 2 2 2 1 Dienelactone hydrolase family Imm1 PF14430.6 gi|284163937|ref|YP_003402216.1| - 0.0069 17.0 0.1 0.021 15.5 0.0 1.8 1 1 0 1 1 1 1 Immunity protein Imm1 PGAP1 PF07819.13 gi|284163937|ref|YP_003402216.1| - 0.022 14.5 0.0 4.5 6.9 0.0 2.1 2 0 0 2 2 2 0 PGAP1-like protein Esterase PF00756.20 gi|284163937|ref|YP_003402216.1| - 0.071 12.7 0.1 3.7 7.1 0.0 2.3 2 1 0 2 2 2 0 Putative esterase SAICAR_synt PF01259.18 gi|284163939|ref|YP_003402218.1| - 4.3e-26 92.1 0.0 9.7e-26 90.9 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.6 gi|284163939|ref|YP_003402218.1| - 0.2 11.8 0.1 0.2 11.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4110) DUF2613 PF11021.8 gi|284163940|ref|YP_003402219.1| - 0.086 13.0 0.3 0.086 13.0 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2613) ThiS PF02597.20 gi|284163941|ref|YP_003402220.1| - 2.2e-07 31.4 0.0 2.5e-07 31.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.12 gi|284163941|ref|YP_003402220.1| - 0.015 15.6 0.0 0.02 15.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I DUF348 PF03990.14 gi|284163941|ref|YP_003402220.1| - 0.22 11.3 1.3 5.5 6.8 0.1 2.5 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain FmdA_AmdA PF03069.15 gi|284163942|ref|YP_003402221.1| - 1.1e-57 195.6 0.0 7.1e-56 189.7 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family Ribosomal_S27e PF01667.17 gi|284163942|ref|YP_003402221.1| - 0.014 15.1 0.1 0.027 14.2 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Lar_restr_allev PF14354.6 gi|284163942|ref|YP_003402221.1| - 0.046 14.1 0.4 0.095 13.1 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.19 gi|284163942|ref|YP_003402221.1| - 0.049 13.6 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|284163942|ref|YP_003402221.1| - 0.082 12.9 0.4 0.16 12.0 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Toluene_X PF03349.16 gi|284163942|ref|YP_003402221.1| - 0.12 10.9 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Outer membrane protein transport protein (OMPP1/FadL/TodX) Zn-ribbon_8 PF09723.10 gi|284163942|ref|YP_003402221.1| - 0.15 12.2 1.5 0.38 10.9 1.5 1.7 1 0 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|284163942|ref|YP_003402221.1| - 0.18 11.9 6.6 0.3 11.2 0.9 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|284163942|ref|YP_003402221.1| - 0.2 11.4 1.7 4 7.3 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|284163942|ref|YP_003402221.1| - 0.21 11.3 2.2 7.8 6.2 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ribbon_3 PF13248.6 gi|284163942|ref|YP_003402221.1| - 0.28 10.6 2.9 11 5.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|284163942|ref|YP_003402221.1| - 0.49 10.8 2.3 0.98 9.8 2.3 1.5 1 0 0 1 1 1 0 Probable Zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|284163942|ref|YP_003402221.1| - 0.64 9.8 2.9 4.2 7.1 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|284163942|ref|YP_003402221.1| - 1.1 9.3 2.9 0.39 10.7 0.1 1.7 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF2267 PF10025.9 gi|284163943|ref|YP_003402222.1| - 1.1e-09 38.7 3.3 1.1e-08 35.4 2.5 2.2 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) DUF3486 PF11985.8 gi|284163943|ref|YP_003402222.1| - 0.023 15.1 0.1 0.026 14.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) zf-UDP PF14569.6 gi|284163944|ref|YP_003402223.1| - 0.014 15.5 0.6 0.016 15.3 0.6 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger Formyl_trans_N PF00551.19 gi|284163945|ref|YP_003402224.1| - 1.7e-43 148.5 0.0 2.3e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|284163945|ref|YP_003402224.1| - 2e-10 40.5 0.2 6.3e-10 38.9 0.2 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|284163945|ref|YP_003402224.1| - 0.00011 22.7 0.2 0.00032 21.2 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|284163945|ref|YP_003402224.1| - 0.00012 21.7 0.5 0.00049 19.8 0.1 2.3 3 0 0 3 3 3 1 ACT domain PurS PF02700.14 gi|284163946|ref|YP_003402225.1| - 1e-26 92.9 0.0 1.1e-26 92.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase SIMPL PF04402.14 gi|284163946|ref|YP_003402225.1| - 0.039 14.4 0.2 0.043 14.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) DUF5505 PF17610.2 gi|284163946|ref|YP_003402225.1| - 0.04 13.9 0.0 0.047 13.7 0.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5505) GATase_5 PF13507.6 gi|284163947|ref|YP_003402226.1| - 8.5e-41 139.8 0.0 1.1e-40 139.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|284163947|ref|YP_003402226.1| - 5.7e-07 29.5 0.0 7.2e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|284163947|ref|YP_003402226.1| - 2.9e-05 23.7 0.0 5.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|284163947|ref|YP_003402226.1| - 0.00014 21.7 0.0 0.00018 21.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|284163947|ref|YP_003402226.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 Peptidase C26 PAS_9 PF13426.7 gi|284163948|ref|YP_003402227.1| - 7.5e-35 119.3 0.1 2.2e-11 43.9 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|284163948|ref|YP_003402227.1| - 2.5e-34 117.8 9.1 1.1e-12 48.2 0.5 4.2 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|284163948|ref|YP_003402227.1| - 1.7e-33 115.0 6.1 1.1e-12 48.0 0.2 4.7 5 0 0 5 5 5 3 PAS fold GAF_2 PF13185.6 gi|284163948|ref|YP_003402227.1| - 1e-21 77.7 7.5 8.1e-10 39.1 0.0 4.1 5 0 0 5 5 4 2 GAF domain PAS_8 PF13188.7 gi|284163948|ref|YP_003402227.1| - 1.9e-17 62.8 0.2 1.8e-06 27.8 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|284163948|ref|YP_003402227.1| - 3.5e-17 62.4 0.0 9e-09 35.5 0.0 3.6 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|284163948|ref|YP_003402227.1| - 1.3e-13 51.4 0.0 3.4e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284163948|ref|YP_003402227.1| - 1.7e-08 34.4 0.0 5.7e-08 32.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF PF01590.26 gi|284163948|ref|YP_003402227.1| - 1e-06 29.4 1.8 3.4e-05 24.5 0.0 3.7 3 1 1 4 4 3 1 GAF domain Response_reg PF00072.24 gi|284163948|ref|YP_003402227.1| - 0.00055 20.1 0.0 0.0016 18.6 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_5 PF14501.6 gi|284163948|ref|YP_003402227.1| - 0.0043 16.9 0.0 0.0097 15.8 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|284163948|ref|YP_003402227.1| - 0.006 16.2 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|284163948|ref|YP_003402227.1| - 0.031 14.1 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|284163948|ref|YP_003402227.1| - 0.049 14.0 0.0 0.27 11.6 0.0 2.3 2 0 0 2 2 2 0 GAF domain YqaH PF17448.2 gi|284163948|ref|YP_003402227.1| - 0.05 13.9 1.6 10 6.5 0.1 3.3 3 0 0 3 3 2 0 Uncharacterized YqaH-like HisKA PF00512.25 gi|284163948|ref|YP_003402227.1| - 0.056 13.5 3.2 0.11 12.5 0.2 3.2 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain TetR_C_22 PF17928.1 gi|284163948|ref|YP_003402227.1| - 3.3 8.1 6.0 5.2 7.4 0.3 3.4 4 0 0 4 4 4 0 Tetracyclin repressor-like, C-terminal domain HalOD1 PF18545.1 gi|284163950|ref|YP_003402229.1| - 9.7e-27 93.1 0.3 1.2e-26 92.7 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|284163951|ref|YP_003402230.1| - 1.8e-17 62.8 0.2 2.9e-17 62.2 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|284163951|ref|YP_003402230.1| - 5.7e-07 29.0 0.3 2.8e-06 26.8 0.3 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.7 gi|284163951|ref|YP_003402230.1| - 8.5e-06 25.7 0.0 8.3e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain BAT PF15915.5 gi|284163951|ref|YP_003402230.1| - 3.3e-05 23.8 0.6 6.1e-05 22.9 0.1 1.6 1 1 1 2 2 2 1 GAF and HTH_10 associated domain HTH_5 PF01022.20 gi|284163951|ref|YP_003402230.1| - 0.00022 21.0 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|284163951|ref|YP_003402230.1| - 0.00023 20.6 0.3 0.00099 18.6 0.3 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|284163951|ref|YP_003402230.1| - 0.0014 18.3 0.0 0.01 15.6 0.1 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|284163951|ref|YP_003402230.1| - 0.0019 18.0 0.1 0.013 15.3 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|284163951|ref|YP_003402230.1| - 0.003 17.2 0.9 0.01 15.5 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284163951|ref|YP_003402230.1| - 0.0051 16.3 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284163951|ref|YP_003402230.1| - 0.0063 16.4 0.1 0.018 14.9 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_1 PF00126.27 gi|284163951|ref|YP_003402230.1| - 0.013 15.4 0.2 0.04 13.9 0.1 1.9 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.6 gi|284163951|ref|YP_003402230.1| - 0.088 12.6 0.2 0.39 10.5 0.0 2.1 2 1 1 3 3 3 0 PucR C-terminal helix-turn-helix domain Imm59 PF15597.6 gi|284163951|ref|YP_003402230.1| - 0.1 13.1 0.2 0.23 12.0 0.1 1.6 2 0 0 2 2 1 0 Immunity protein 59 HTH_11 PF08279.12 gi|284163951|ref|YP_003402230.1| - 0.13 12.2 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 HTH domain UPF0122 PF04297.14 gi|284163951|ref|YP_003402230.1| - 0.15 12.3 0.0 0.31 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Zn-ribbon_8 PF09723.10 gi|284163952|ref|YP_003402231.1| - 0.0001 22.3 1.3 0.092 12.9 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284163952|ref|YP_003402231.1| - 0.00038 19.7 1.0 0.11 12.0 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|284163952|ref|YP_003402231.1| - 0.0053 16.8 2.4 0.31 11.1 0.2 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|284163952|ref|YP_003402231.1| - 0.0069 16.3 0.8 0.0087 16.0 0.8 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|284163952|ref|YP_003402231.1| - 0.027 14.4 1.6 4.5 7.3 0.1 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.6 gi|284163952|ref|YP_003402231.1| - 0.089 13.3 2.1 5.1 7.7 0.6 2.5 2 1 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|284163952|ref|YP_003402231.1| - 0.16 12.0 5.8 1.9 8.5 0.3 2.5 1 1 2 3 3 3 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|284163952|ref|YP_003402231.1| - 0.2 11.6 4.1 7.2 6.6 0.2 2.6 2 1 0 2 2 2 0 Nudix N-terminal Rubredoxin PF00301.20 gi|284163952|ref|YP_003402231.1| - 0.31 11.1 5.3 3.1 7.9 5.1 2.2 1 1 1 2 2 2 0 Rubredoxin zf-ACC PF17848.1 gi|284163952|ref|YP_003402231.1| - 1.9 8.6 5.4 13 6.0 0.3 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain BAT PF15915.5 gi|284163953|ref|YP_003402232.1| - 4.7e-45 153.3 16.0 4.7e-45 153.3 16.0 3.5 4 1 0 4 4 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|284163953|ref|YP_003402232.1| - 3.8e-25 88.1 0.1 1.2e-22 80.1 0.1 2.6 2 0 0 2 2 2 1 PAS domain HTH_10 PF04967.12 gi|284163953|ref|YP_003402232.1| - 7.8e-21 73.6 0.0 2.8e-20 71.9 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|284163953|ref|YP_003402232.1| - 6.6e-18 64.8 1.1 9.3e-14 51.4 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|284163953|ref|YP_003402232.1| - 2.1e-12 47.3 3.0 4.1e-11 43.1 0.1 3.6 4 0 0 4 4 4 1 PAS fold PAS_3 PF08447.12 gi|284163953|ref|YP_003402232.1| - 2e-11 44.0 0.1 4.3e-11 43.0 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|284163953|ref|YP_003402232.1| - 7.5e-09 35.4 0.5 0.0014 18.6 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|284163953|ref|YP_003402232.1| - 1.5e-05 25.3 1.4 0.00013 22.3 1.4 2.7 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|284163953|ref|YP_003402232.1| - 0.036 14.4 0.1 0.11 12.8 0.1 2.0 1 0 0 1 1 1 0 GAF domain PAS_12 PF18095.1 gi|284163953|ref|YP_003402232.1| - 0.06 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain DUF134 PF02001.16 gi|284163953|ref|YP_003402232.1| - 0.079 13.5 0.0 0.25 11.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 DUF1328 PF07043.13 gi|284163954|ref|YP_003402233.1| - 4.6e-10 39.5 19.5 6.6e-10 39.0 19.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) AFOR_C PF01314.18 gi|284163955|ref|YP_003402234.1| - 4.7e-121 404.4 4.5 5.6e-121 404.1 4.5 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284163955|ref|YP_003402234.1| - 1.3e-72 243.8 0.1 2e-72 243.3 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Methyltransf_25 PF13649.6 gi|284163956|ref|YP_003402235.1| - 4.6e-14 52.9 0.0 8e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284163956|ref|YP_003402235.1| - 2e-13 50.8 0.0 4.1e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284163956|ref|YP_003402235.1| - 4.4e-09 37.0 0.0 6.9e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284163956|ref|YP_003402235.1| - 1.5e-08 34.6 0.0 2.2e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284163956|ref|YP_003402235.1| - 7.6e-06 25.9 0.0 1.7e-05 24.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284163956|ref|YP_003402235.1| - 1.2e-05 24.7 0.0 1.7e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|284163956|ref|YP_003402235.1| - 0.0068 15.9 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|284163956|ref|YP_003402235.1| - 0.019 14.3 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase TauE PF01925.19 gi|284163956|ref|YP_003402235.1| - 0.032 13.9 0.7 0.04 13.5 0.7 1.2 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE Methyltransf_2 PF00891.18 gi|284163956|ref|YP_003402235.1| - 0.036 13.3 0.1 0.085 12.1 0.1 1.6 1 1 0 1 1 1 0 O-methyltransferase domain PCMT PF01135.19 gi|284163956|ref|YP_003402235.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|284163956|ref|YP_003402235.1| - 0.13 12.0 0.0 0.54 10.1 0.0 1.8 2 0 0 2 2 2 0 Hypothetical methyltransferase MetW PF07021.12 gi|284163956|ref|YP_003402235.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|284163956|ref|YP_003402235.1| - 0.22 11.0 0.0 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain NMT1 PF09084.11 gi|284163957|ref|YP_003402236.1| - 4.5e-32 111.7 0.0 5.8e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|284163957|ref|YP_003402236.1| - 0.014 15.1 0.3 0.18 11.4 0.3 2.6 1 1 0 1 1 1 0 NMT1-like family TAT_signal PF10518.9 gi|284163957|ref|YP_003402236.1| - 6.3 6.8 6.5 1.5 8.8 0.7 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|284163958|ref|YP_003402237.1| - 1.5e-20 73.7 18.4 1.5e-20 73.7 18.4 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Methyltransf_11 PF08241.12 gi|284163959|ref|YP_003402238.1| - 5.3e-22 78.3 0.1 9.6e-22 77.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284163959|ref|YP_003402238.1| - 1.5e-19 70.5 0.1 3.1e-19 69.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284163959|ref|YP_003402238.1| - 4.2e-16 59.1 0.0 5.7e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284163959|ref|YP_003402238.1| - 2.1e-13 50.1 0.0 3.2e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284163959|ref|YP_003402238.1| - 2.6e-12 46.9 0.0 4e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284163959|ref|YP_003402238.1| - 1.3e-10 41.9 0.0 2.9e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|284163959|ref|YP_003402238.1| - 1e-07 31.5 0.0 1.3e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|284163959|ref|YP_003402238.1| - 3.4e-06 26.8 0.0 5.5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|284163959|ref|YP_003402238.1| - 0.00047 20.1 0.0 0.004 17.0 0.0 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|284163959|ref|YP_003402238.1| - 0.00087 19.3 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284163959|ref|YP_003402238.1| - 0.0067 16.2 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0146 PF03686.13 gi|284163959|ref|YP_003402238.1| - 0.0091 15.9 0.1 0.096 12.6 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0146) DOT1 PF08123.13 gi|284163959|ref|YP_003402238.1| - 0.02 14.4 0.0 0.03 13.9 0.0 1.1 1 0 0 1 1 1 0 Histone methylation protein DOT1 MTS PF05175.14 gi|284163959|ref|YP_003402238.1| - 0.023 14.3 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain ADH_zinc_N PF00107.26 gi|284163959|ref|YP_003402238.1| - 0.052 13.5 0.0 0.21 11.6 0.0 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_18 PF12847.7 gi|284163959|ref|YP_003402238.1| - 0.062 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|284163959|ref|YP_003402238.1| - 0.086 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_2 PF00891.18 gi|284163959|ref|YP_003402238.1| - 0.093 12.0 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain UPF0020 PF01170.18 gi|284163959|ref|YP_003402238.1| - 0.16 11.6 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 FtsJ PF01728.19 gi|284163959|ref|YP_003402238.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|284163959|ref|YP_003402238.1| - 0.22 11.0 0.0 0.43 10.0 0.0 1.5 1 0 0 1 1 1 0 Putative methyltransferase BPD_transp_1 PF00528.22 gi|284163960|ref|YP_003402239.1| - 1.5e-16 60.7 13.2 1.5e-16 60.7 13.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2070 PF09843.9 gi|284163960|ref|YP_003402239.1| - 3.8 5.7 8.2 12 4.1 8.2 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|284163961|ref|YP_003402240.1| - 4.3e-30 105.0 0.0 7.2e-30 104.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|284163961|ref|YP_003402240.1| - 3.4e-06 27.5 0.0 5.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|284163961|ref|YP_003402240.1| - 6.1e-05 23.0 0.1 0.0042 16.9 0.0 2.3 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284163961|ref|YP_003402240.1| - 0.00067 19.9 0.6 0.0046 17.2 0.1 2.4 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|284163961|ref|YP_003402240.1| - 0.00081 19.6 0.0 0.0023 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284163961|ref|YP_003402240.1| - 0.00087 19.2 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|284163961|ref|YP_003402240.1| - 0.0053 16.0 0.1 0.019 14.2 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain AAA_29 PF13555.6 gi|284163961|ref|YP_003402240.1| - 0.0075 16.0 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284163961|ref|YP_003402240.1| - 0.0076 16.0 0.3 0.022 14.5 0.2 1.9 1 1 1 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|284163961|ref|YP_003402240.1| - 0.019 13.7 0.1 0.86 8.3 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|284163961|ref|YP_003402240.1| - 0.024 14.6 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|284163961|ref|YP_003402240.1| - 0.026 14.1 0.0 0.079 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|284163961|ref|YP_003402240.1| - 0.03 14.2 0.2 0.054 13.4 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|284163961|ref|YP_003402240.1| - 0.036 14.5 0.5 0.17 12.3 0.4 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|284163961|ref|YP_003402240.1| - 0.052 14.1 0.0 0.076 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|284163961|ref|YP_003402240.1| - 0.085 12.9 0.1 0.24 11.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|284163961|ref|YP_003402240.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 gi|284163961|ref|YP_003402240.1| - 0.14 11.6 0.0 1.5 8.2 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|284163961|ref|YP_003402240.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|284163961|ref|YP_003402240.1| - 0.23 11.2 0.1 0.39 10.5 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.6 gi|284163961|ref|YP_003402240.1| - 0.26 11.0 0.0 0.38 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|284163961|ref|YP_003402240.1| - 0.32 10.5 0.5 0.54 9.8 0.5 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|284163961|ref|YP_003402240.1| - 0.44 10.4 2.1 7.3 6.5 0.7 2.2 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|284163961|ref|YP_003402240.1| - 0.47 10.7 3.9 0.46 10.7 0.9 2.3 2 1 0 3 3 3 0 AAA domain NMT1 PF09084.11 gi|284163962|ref|YP_003402241.1| - 1.9e-29 103.2 0.0 2.5e-29 102.8 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|284163962|ref|YP_003402241.1| - 2.1e-09 37.3 0.0 3.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein GntR PF00392.21 gi|284163962|ref|YP_003402241.1| - 0.00038 20.0 0.1 0.0015 18.2 0.1 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family NMT1_2 PF13379.6 gi|284163962|ref|YP_003402241.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 NMT1-like family TrmB PF01978.19 gi|284163962|ref|YP_003402241.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SBP_bac_3 PF00497.20 gi|284163962|ref|YP_003402241.1| - 0.028 13.9 0.0 0.13 11.6 0.0 2.1 2 1 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 MarR PF01047.22 gi|284163962|ref|YP_003402241.1| - 0.031 14.2 0.1 0.063 13.2 0.1 1.4 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|284163962|ref|YP_003402241.1| - 0.063 13.2 0.5 0.063 13.2 0.5 2.7 4 0 0 4 4 4 0 MarR family TrkA_N PF02254.18 gi|284163962|ref|YP_003402241.1| - 0.11 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain HTH_Crp_2 PF13545.6 gi|284163962|ref|YP_003402241.1| - 0.22 11.5 1.7 0.97 9.5 1.1 2.4 2 1 0 2 2 2 0 Crp-like helix-turn-helix domain PQQ PF01011.21 gi|284163964|ref|YP_003402243.1| - 9.1e-21 72.7 6.5 0.0005 19.9 0.1 7.4 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|284163964|ref|YP_003402243.1| - 1.5e-18 67.2 7.1 4.3e-09 36.3 1.3 3.3 2 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|284163964|ref|YP_003402243.1| - 2.7e-10 40.4 29.5 0.00099 19.5 0.6 7.7 7 1 0 7 7 7 3 PQQ-like domain Copper-bind PF00127.20 gi|284163965|ref|YP_003402244.1| - 1.9e-08 34.6 1.1 8.9e-06 26.1 0.0 3.5 4 0 0 4 4 4 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|284163965|ref|YP_003402244.1| - 0.0045 16.8 7.5 0.0076 16.1 7.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Na_Ca_ex PF01699.24 gi|284163966|ref|YP_003402245.1| - 1.7e-22 80.0 42.6 1.1e-15 57.8 15.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_Ca_ex PF01699.24 gi|284163967|ref|YP_003402246.1| - 2.7e-16 59.9 42.5 1.2e-12 48.0 16.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Ost4 PF10215.9 gi|284163967|ref|YP_003402246.1| - 0.23 11.3 1.7 0.54 10.1 0.1 2.6 2 0 0 2 2 2 0 Oligosaccaryltransferase Haem_degrading PF03928.14 gi|284163968|ref|YP_003402247.1| - 3.7e-35 120.5 0.2 4.2e-35 120.4 0.2 1.0 1 0 0 1 1 1 1 Haem-degrading ADH_N PF08240.12 gi|284163969|ref|YP_003402248.1| - 6.4e-27 93.6 0.9 1.3e-26 92.6 0.9 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284163969|ref|YP_003402248.1| - 1.4e-09 38.1 0.0 5.7e-09 36.0 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|284163969|ref|YP_003402248.1| - 2.2e-09 37.1 0.9 6e-09 35.7 0.9 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated AlaDh_PNT_C PF01262.21 gi|284163969|ref|YP_003402248.1| - 0.0022 17.4 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|284163969|ref|YP_003402248.1| - 0.0023 17.4 0.0 0.019 14.4 0.0 2.2 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus HI0933_like PF03486.14 gi|284163969|ref|YP_003402248.1| - 0.0091 14.7 0.1 0.041 12.6 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|284163969|ref|YP_003402248.1| - 0.096 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284163969|ref|YP_003402248.1| - 0.13 11.5 0.1 0.21 10.8 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|284163969|ref|YP_003402248.1| - 0.16 11.2 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain DUF1059 PF06348.11 gi|284163970|ref|YP_003402249.1| - 0.00032 20.9 0.3 0.00034 20.8 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) cobW PF02492.19 gi|284163972|ref|YP_003402251.1| - 2.8e-50 170.3 0.0 3.9e-50 169.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|284163972|ref|YP_003402251.1| - 1.1e-29 102.2 0.0 1.8e-29 101.5 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|284163972|ref|YP_003402251.1| - 0.0047 16.5 0.0 0.77 9.3 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|284163972|ref|YP_003402251.1| - 0.005 16.8 0.0 0.29 11.0 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|284163972|ref|YP_003402251.1| - 0.018 15.4 0.0 0.044 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain T2SSE PF00437.20 gi|284163972|ref|YP_003402251.1| - 0.037 13.1 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2303 PF10065.9 gi|284163972|ref|YP_003402251.1| - 0.054 12.6 0.0 0.085 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) ATPase_2 PF01637.18 gi|284163972|ref|YP_003402251.1| - 0.063 13.2 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|284163972|ref|YP_003402251.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|284163972|ref|YP_003402251.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|284163972|ref|YP_003402251.1| - 0.15 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.23 gi|284163972|ref|YP_003402251.1| - 0.17 12.0 0.0 0.49 10.5 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase HTH_5 PF01022.20 gi|284163973|ref|YP_003402252.1| - 1.4e-13 50.5 0.0 2.1e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284163973|ref|YP_003402252.1| - 1.4e-11 44.3 0.0 2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284163973|ref|YP_003402252.1| - 7.2e-06 25.8 0.0 1e-05 25.3 0.0 1.3 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|284163973|ref|YP_003402252.1| - 7.3e-06 25.7 0.3 1.3e-05 24.9 0.1 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284163973|ref|YP_003402252.1| - 0.0001 22.1 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284163973|ref|YP_003402252.1| - 0.00011 21.9 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|284163973|ref|YP_003402252.1| - 0.00046 19.7 0.0 0.0025 17.3 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|284163973|ref|YP_003402252.1| - 0.0014 18.6 0.1 0.0045 16.9 0.1 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 gi|284163973|ref|YP_003402252.1| - 0.0021 17.8 0.0 0.0032 17.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain DprA_WH PF17782.1 gi|284163973|ref|YP_003402252.1| - 0.003 17.6 0.0 0.0057 16.7 0.0 1.4 1 0 0 1 1 1 1 DprA winged helix domain DUF2250 PF10007.9 gi|284163973|ref|YP_003402252.1| - 0.0074 16.4 0.2 0.068 13.3 0.2 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|284163973|ref|YP_003402252.1| - 0.013 16.0 0.0 0.017 15.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|284163973|ref|YP_003402252.1| - 0.036 14.0 0.0 0.053 13.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|284163973|ref|YP_003402252.1| - 0.053 13.9 0.0 0.077 13.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|284163973|ref|YP_003402252.1| - 0.058 13.6 0.0 0.096 12.9 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|284163973|ref|YP_003402252.1| - 0.09 13.0 0.1 0.13 12.5 0.1 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.6 gi|284163973|ref|YP_003402252.1| - 0.097 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain ArsR PF09824.9 gi|284163973|ref|YP_003402252.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Hexokinase_2 PF03727.16 gi|284163974|ref|YP_003402253.1| - 0.043 13.2 0.0 0.049 13.0 0.0 1.0 1 0 0 1 1 1 0 Hexokinase Molybdopterin PF00384.22 gi|284163976|ref|YP_003402255.1| - 8.7e-74 249.0 0.0 1.1e-73 248.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284163976|ref|YP_003402255.1| - 6.9e-28 96.9 0.2 1.3e-27 96.0 0.2 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|284163976|ref|YP_003402255.1| - 1.6e-13 50.4 0.2 4.4e-13 49.0 0.2 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain AFOR_C PF01314.18 gi|284163978|ref|YP_003402257.1| - 6e-117 390.9 4.0 7.6e-117 390.5 4.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284163978|ref|YP_003402257.1| - 1.2e-72 243.9 0.1 1.8e-72 243.4 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SnoaL_4 PF13577.6 gi|284163978|ref|YP_003402257.1| - 0.041 14.0 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 SnoaL-like domain DUF998 PF06197.13 gi|284163979|ref|YP_003402258.1| - 3.2e-17 62.7 29.6 4e-17 62.4 29.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YdjM PF04307.14 gi|284163980|ref|YP_003402259.1| - 5.1e-05 22.7 15.8 0.00059 19.2 15.8 2.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase HTH_20 PF12840.7 gi|284163981|ref|YP_003402260.1| - 3.1e-12 46.4 0.4 4.6e-12 45.8 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284163981|ref|YP_003402260.1| - 1.4e-06 28.0 0.1 2.1e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284163981|ref|YP_003402260.1| - 8.7e-06 25.4 0.1 1.5e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain ArsR PF09824.9 gi|284163981|ref|YP_003402260.1| - 2.3e-05 24.1 0.0 2.6e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator MarR_2 PF12802.7 gi|284163981|ref|YP_003402260.1| - 0.00011 22.0 0.1 0.00017 21.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284163981|ref|YP_003402260.1| - 0.0094 15.5 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284163981|ref|YP_003402260.1| - 0.014 15.2 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FUR PF01475.19 gi|284163981|ref|YP_003402260.1| - 0.022 14.9 0.1 0.027 14.6 0.1 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Fe_dep_repress PF01325.19 gi|284163981|ref|YP_003402260.1| - 0.025 14.8 0.0 0.037 14.2 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|284163981|ref|YP_003402260.1| - 0.033 14.5 0.0 0.051 13.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|284163981|ref|YP_003402260.1| - 0.037 14.0 0.1 0.055 13.4 0.1 1.2 1 0 0 1 1 1 0 HTH domain Asparaginase_II PF06089.12 gi|284163981|ref|YP_003402260.1| - 0.073 12.1 0.0 0.098 11.7 0.0 1.1 1 0 0 1 1 1 0 L-asparaginase II HTH_10 PF04967.12 gi|284163982|ref|YP_003402261.1| - 3.8e-20 71.4 0.1 6.4e-20 70.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|284163982|ref|YP_003402261.1| - 0.05 13.1 0.1 2.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|284163982|ref|YP_003402261.1| - 0.062 13.1 0.2 0.28 11.0 0.2 2.0 1 1 0 1 1 1 0 LexA DNA binding domain Homeodomain PF00046.29 gi|284163982|ref|YP_003402261.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain HTH_24 PF13412.6 gi|284163982|ref|YP_003402261.1| - 0.16 11.6 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Zn-ribbon_8 PF09723.10 gi|284163983|ref|YP_003402262.1| - 1.7e-09 37.6 1.9 2e-09 37.4 1.9 1.1 1 0 0 1 1 1 1 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|284163983|ref|YP_003402262.1| - 1.7e-05 24.7 4.1 0.012 15.6 0.2 2.2 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|284163983|ref|YP_003402262.1| - 0.00012 21.3 0.5 0.19 11.2 0.0 2.3 2 1 0 2 2 2 2 zinc-ribbon domain zf-Di19 PF05605.12 gi|284163983|ref|YP_003402262.1| - 0.00014 22.1 1.2 0.0047 17.2 1.2 2.0 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.7 gi|284163983|ref|YP_003402262.1| - 0.00031 20.7 0.6 0.00037 20.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|284163983|ref|YP_003402262.1| - 0.00058 19.4 1.3 0.0048 16.5 0.4 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|284163983|ref|YP_003402262.1| - 0.0006 19.3 4.1 0.016 14.7 0.3 2.1 1 1 0 2 2 2 1 TFIIB zinc-binding zf_Rg PF17915.1 gi|284163983|ref|YP_003402262.1| - 0.00072 18.9 0.1 0.38 10.2 0.0 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger Sgf11 PF08209.11 gi|284163983|ref|YP_003402262.1| - 0.001 18.6 0.3 0.18 11.4 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) Elf1 PF05129.13 gi|284163983|ref|YP_003402262.1| - 0.0013 18.8 0.5 0.0013 18.7 0.5 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like CpXC PF14353.6 gi|284163983|ref|YP_003402262.1| - 0.002 18.2 1.6 0.094 12.8 0.1 2.0 1 1 1 2 2 2 1 CpXC protein YacG PF03884.14 gi|284163983|ref|YP_003402262.1| - 0.0025 17.5 0.8 0.58 9.9 0.1 2.1 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG Nop10p PF04135.12 gi|284163983|ref|YP_003402262.1| - 0.0029 17.6 1.9 0.078 13.0 0.1 2.1 1 1 1 2 2 2 1 Nucleolar RNA-binding protein, Nop10p family zinc_ribbon_2 PF13240.6 gi|284163983|ref|YP_003402262.1| - 0.0037 16.9 1.6 1.1 9.1 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-ISL3 PF14690.6 gi|284163983|ref|YP_003402262.1| - 0.0045 17.6 0.3 2.8 8.7 0.0 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1610 PF07754.11 gi|284163983|ref|YP_003402262.1| - 0.0045 16.9 3.3 0.13 12.3 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-LITAF-like PF10601.9 gi|284163983|ref|YP_003402262.1| - 0.005 17.1 1.5 2 8.7 0.1 2.1 1 1 0 2 2 2 1 LITAF-like zinc ribbon domain Ogr_Delta PF04606.12 gi|284163983|ref|YP_003402262.1| - 0.0053 16.7 0.9 1.2 9.1 0.1 2.3 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zinc-ribbons_6 PF07191.12 gi|284163983|ref|YP_003402262.1| - 0.0056 16.6 1.0 0.029 14.3 1.0 1.8 1 1 1 2 2 2 2 zinc-ribbons HypA PF01155.19 gi|284163983|ref|YP_003402262.1| - 0.0064 16.5 0.7 0.0064 16.5 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|284163983|ref|YP_003402262.1| - 0.0064 16.9 3.3 0.56 10.6 0.6 2.1 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|284163983|ref|YP_003402262.1| - 0.0066 16.3 0.3 0.01 15.8 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Acetone_carb_G PF08882.11 gi|284163983|ref|YP_003402262.1| - 0.0072 16.5 1.8 0.14 12.3 0.3 2.0 1 1 1 2 2 2 1 Acetone carboxylase gamma subunit zf-Mss51 PF13824.6 gi|284163983|ref|YP_003402262.1| - 0.0078 16.3 3.0 0.07 13.2 0.2 2.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.7 gi|284163983|ref|YP_003402262.1| - 0.0083 16.1 1.8 0.75 9.8 0.2 2.1 1 1 1 2 2 2 1 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|284163983|ref|YP_003402262.1| - 0.012 15.6 0.2 4.5 7.4 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin DUF2072 PF09845.9 gi|284163983|ref|YP_003402262.1| - 0.014 15.7 0.7 0.017 15.4 0.7 1.3 1 1 0 1 1 1 0 Zn-ribbon containing protein Nudix_N_2 PF14803.6 gi|284163983|ref|YP_003402262.1| - 0.014 15.3 1.0 0.29 11.1 1.7 2.0 1 1 1 2 2 2 0 Nudix N-terminal Zn_ribbon_SprT PF17283.2 gi|284163983|ref|YP_003402262.1| - 0.017 15.0 1.6 0.1 12.5 1.6 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain UPF0547 PF10571.9 gi|284163983|ref|YP_003402262.1| - 0.018 15.1 4.4 0.55 10.4 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.6 gi|284163983|ref|YP_003402262.1| - 0.023 14.6 2.1 0.31 11.0 2.1 2.0 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-C4_Topoisom PF01396.19 gi|284163983|ref|YP_003402262.1| - 0.026 14.3 1.8 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C3HC4_3 PF13920.6 gi|284163983|ref|YP_003402262.1| - 0.029 14.2 0.7 0.13 12.1 0.7 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2116 PF09889.9 gi|284163983|ref|YP_003402262.1| - 0.031 14.3 2.0 1 9.4 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) OrfB_Zn_ribbon PF07282.11 gi|284163983|ref|YP_003402262.1| - 0.033 14.1 1.1 0.052 13.5 1.1 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.21 gi|284163983|ref|YP_003402262.1| - 0.035 14.3 0.5 0.044 14.0 0.5 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain PknG_rubred PF16919.5 gi|284163983|ref|YP_003402262.1| - 0.035 14.3 0.4 0.037 14.2 0.4 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain RNHCP PF12647.7 gi|284163983|ref|YP_003402262.1| - 0.036 14.0 0.8 0.047 13.7 0.8 1.4 1 1 0 1 1 1 0 RNHCP domain zf_C2H2_10 PF18414.1 gi|284163983|ref|YP_003402262.1| - 0.036 13.6 1.2 3.4 7.3 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger YhfH PF14149.6 gi|284163983|ref|YP_003402262.1| - 0.038 14.0 4.6 0.25 11.4 1.3 2.2 1 1 0 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|284163983|ref|YP_003402262.1| - 0.046 13.4 1.7 2.9 7.6 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Hpr_kinase_N PF02603.16 gi|284163983|ref|YP_003402262.1| - 0.048 13.7 0.0 0.048 13.7 0.0 1.0 1 0 0 1 1 1 0 HPr Serine kinase N terminus TFIIS_C PF01096.18 gi|284163983|ref|YP_003402262.1| - 0.053 13.4 1.2 7.1 6.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RRN7 PF11781.8 gi|284163983|ref|YP_003402262.1| - 0.074 12.7 3.2 4.7 7.0 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-TFIIB PF13453.6 gi|284163983|ref|YP_003402262.1| - 0.084 12.2 1.9 4.6 6.7 3.2 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger Ribosomal_L37ae PF01780.19 gi|284163983|ref|YP_003402262.1| - 0.084 13.0 0.2 0.1 12.7 0.2 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-C2H2_4 PF13894.6 gi|284163983|ref|YP_003402262.1| - 0.088 13.7 0.3 16 6.6 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ACC PF17848.1 gi|284163983|ref|YP_003402262.1| - 0.11 12.6 1.1 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_10 PF10058.9 gi|284163983|ref|YP_003402262.1| - 0.11 12.2 0.9 0.29 10.9 0.9 1.7 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-C2H2 PF00096.26 gi|284163983|ref|YP_003402262.1| - 0.12 12.9 0.3 3.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|284163983|ref|YP_003402262.1| - 0.15 12.5 0.8 3.7 8.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Terminase_GpA PF05876.12 gi|284163983|ref|YP_003402262.1| - 0.16 10.5 0.8 0.16 10.5 0.8 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Lar_restr_allev PF14354.6 gi|284163983|ref|YP_003402262.1| - 0.16 12.4 2.8 0.57 10.6 2.8 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF983 PF06170.12 gi|284163983|ref|YP_003402262.1| - 0.17 12.3 1.6 7.7 7.0 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Prim_Zn_Ribbon PF08273.12 gi|284163983|ref|YP_003402262.1| - 0.33 11.3 4.4 6 7.2 0.8 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-dskA_traR PF01258.17 gi|284163983|ref|YP_003402262.1| - 0.35 10.9 6.4 28 4.7 6.6 2.3 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-tcix PF14952.6 gi|284163983|ref|YP_003402262.1| - 0.39 10.4 3.7 6 6.6 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Rad50_zn_hook PF04423.14 gi|284163983|ref|YP_003402262.1| - 0.46 10.4 3.1 0.59 10.0 0.1 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif DUF3797 PF12677.7 gi|284163983|ref|YP_003402262.1| - 0.86 9.5 4.3 5.8 6.9 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Pyridox_ox_2 PF12900.7 gi|284163984|ref|YP_003402263.1| - 1.6e-15 57.3 0.0 2.2e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|284163984|ref|YP_003402263.1| - 3.4e-05 23.9 0.0 4.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|284163984|ref|YP_003402263.1| - 0.01 15.4 0.0 0.023 14.3 0.0 1.5 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like DUF2870 PF11069.8 gi|284163985|ref|YP_003402264.1| - 0.12 12.7 0.0 0.2 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2870) AzlD PF05437.12 gi|284163987|ref|YP_003402266.1| - 4.5e-15 55.6 10.3 5.2e-15 55.4 10.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.14 gi|284163988|ref|YP_003402267.1| - 2.6e-38 131.5 13.6 2.6e-38 131.5 13.6 1.8 2 0 0 2 2 2 1 AzlC protein DUF1072 PF06380.11 gi|284163988|ref|YP_003402267.1| - 1.7 8.6 6.5 5.4 7.0 0.1 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) Bacillus_PapR PF05968.11 gi|284163988|ref|YP_003402267.1| - 8.4 6.4 8.7 1.1 9.2 3.7 2.1 2 0 0 2 2 2 0 Bacillus PapR protein ATPgrasp_Ter PF15632.6 gi|284163989|ref|YP_003402268.1| - 9.5e-05 22.1 0.0 0.00018 21.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|284163989|ref|YP_003402268.1| - 0.00071 19.7 0.0 0.0038 17.3 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|284163989|ref|YP_003402268.1| - 0.0046 16.5 0.0 0.0092 15.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ThiS PF02597.20 gi|284163990|ref|YP_003402269.1| - 7e-19 68.3 0.1 8e-19 68.1 0.1 1.0 1 0 0 1 1 1 1 ThiS family DUF4699 PF15770.5 gi|284163990|ref|YP_003402269.1| - 0.05 13.4 0.2 0.053 13.3 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4699) Ub-Mut7C PF14451.6 gi|284163990|ref|YP_003402269.1| - 0.14 12.0 0.3 3.7 7.4 0.1 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin Glycos_transf_1 PF00534.20 gi|284163992|ref|YP_003402271.1| - 1.5e-31 109.2 0.0 2.3e-31 108.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284163992|ref|YP_003402271.1| - 6.9e-26 91.3 0.0 1.4e-25 90.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284163992|ref|YP_003402271.1| - 2.3e-21 76.6 2.4 4.2e-21 75.7 1.3 2.1 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284163992|ref|YP_003402271.1| - 4.9e-11 43.3 7.3 4.9e-11 43.3 7.3 2.9 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|284163992|ref|YP_003402271.1| - 1.9e-07 31.4 0.1 3.7e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|284163992|ref|YP_003402271.1| - 0.0034 17.4 0.0 0.0058 16.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like GPW_gp25 PF04965.14 gi|284163994|ref|YP_003402273.1| - 0.006 16.3 0.8 1.1 9.1 0.0 2.3 1 1 1 2 2 2 2 Gene 25-like lysozyme Foie-gras_1 PF11817.8 gi|284163994|ref|YP_003402273.1| - 0.098 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Foie gras liver health family 1 Acetyltransf_1 PF00583.25 gi|284163995|ref|YP_003402274.1| - 7.6e-09 35.8 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284163995|ref|YP_003402274.1| - 1.1e-05 25.8 0.0 1.8e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284163995|ref|YP_003402274.1| - 0.00014 21.8 0.0 0.00031 20.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284163995|ref|YP_003402274.1| - 0.0073 16.5 0.0 0.021 14.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain HTH_24 PF13412.6 gi|284163995|ref|YP_003402274.1| - 0.035 13.7 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Acetyltransf_3 PF13302.7 gi|284163995|ref|YP_003402274.1| - 0.064 13.9 0.0 0.12 13.0 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|284163995|ref|YP_003402274.1| - 0.13 11.8 0.1 0.2 11.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) AAA_22 PF13401.6 gi|284163997|ref|YP_003402276.1| - 2.6e-11 43.9 0.0 4.1e-10 40.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|284163997|ref|YP_003402276.1| - 7.6e-08 32.5 0.0 1.4e-06 28.4 0.0 2.2 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_16 PF13191.6 gi|284163997|ref|YP_003402276.1| - 6e-06 26.8 4.8 0.00019 21.8 0.5 3.0 1 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284163997|ref|YP_003402276.1| - 5.3e-05 23.7 0.0 0.00025 21.5 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284163997|ref|YP_003402276.1| - 5.4e-05 23.2 0.0 0.00013 21.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_assoc_2 PF16193.5 gi|284163997|ref|YP_003402276.1| - 0.00011 22.5 1.1 0.00036 20.8 0.1 2.4 3 0 0 3 3 3 1 AAA C-terminal domain ATPase_2 PF01637.18 gi|284163997|ref|YP_003402276.1| - 0.00019 21.4 0.0 0.0014 18.6 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|284163997|ref|YP_003402276.1| - 0.00044 19.7 0.0 0.00067 19.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|284163997|ref|YP_003402276.1| - 0.0068 15.6 0.0 0.0096 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.6 gi|284163997|ref|YP_003402276.1| - 0.011 16.3 0.1 0.046 14.3 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|284163997|ref|YP_003402276.1| - 0.032 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|284163997|ref|YP_003402276.1| - 0.042 13.9 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Cdc6_C PF09079.11 gi|284163997|ref|YP_003402276.1| - 0.1 12.6 0.1 0.31 11.1 0.1 1.8 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain PhoH PF02562.16 gi|284163997|ref|YP_003402276.1| - 0.1 12.0 0.0 1.5 8.3 0.0 2.4 3 0 0 3 3 3 0 PhoH-like protein TrwB_AAD_bind PF10412.9 gi|284163997|ref|YP_003402276.1| - 0.16 10.9 0.0 1.4 7.8 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain HATPase_c PF02518.26 gi|284163998|ref|YP_003402277.1| - 3.7e-10 40.3 0.0 7.4e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|284163998|ref|YP_003402277.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.6 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|284163999|ref|YP_003402278.1| - 7.3e-21 74.4 0.0 8.7e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain BAT PF15915.5 gi|284164000|ref|YP_003402279.1| - 4.4e-38 130.6 8.6 4.4e-38 130.6 8.6 3.0 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284164000|ref|YP_003402279.1| - 2e-20 72.3 0.0 4.2e-20 71.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|284164000|ref|YP_003402279.1| - 1.2e-18 67.8 0.9 2.9e-18 66.5 0.2 2.1 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|284164000|ref|YP_003402279.1| - 4.2e-17 62.3 0.1 3.1e-16 59.5 0.1 2.4 1 1 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|284164000|ref|YP_003402279.1| - 5.3e-07 30.3 0.0 1.3e-06 29.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|284164000|ref|YP_003402279.1| - 0.00011 22.6 0.1 0.00091 19.6 0.0 2.4 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.12 gi|284164000|ref|YP_003402279.1| - 0.0018 17.9 0.1 0.035 13.8 0.0 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284164000|ref|YP_003402279.1| - 0.01 15.4 0.0 0.021 14.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ferritin PF00210.24 gi|284164001|ref|YP_003402280.1| - 3.7e-32 111.2 9.7 4.4e-32 111.0 9.7 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF1512 PF07431.12 gi|284164001|ref|YP_003402280.1| - 0.05 12.6 0.3 0.077 12.0 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1512) Serine_rich PF08824.10 gi|284164001|ref|YP_003402280.1| - 0.094 12.7 1.0 0.48 10.4 0.3 2.1 1 1 1 2 2 2 0 Serine rich protein interaction domain DUF1451 PF07295.11 gi|284164001|ref|YP_003402280.1| - 0.11 12.5 8.7 0.32 11.0 1.2 2.7 1 1 1 2 2 2 0 Zinc-ribbon containing domain CorA PF01544.18 gi|284164001|ref|YP_003402280.1| - 0.38 10.0 5.5 0.16 11.3 3.6 1.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Fe_dep_repr_C PF02742.15 gi|284164001|ref|YP_003402280.1| - 1.2 9.3 7.2 4.5 7.4 0.7 3.3 3 0 0 3 3 3 0 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|284164002|ref|YP_003402281.1| - 2.5e-14 53.2 0.3 5.5e-14 52.1 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|284164002|ref|YP_003402281.1| - 2.1e-07 30.7 0.2 4.8e-07 29.6 0.0 1.7 2 1 0 2 2 2 1 MarR family Fe_dep_repr_C PF02742.15 gi|284164002|ref|YP_003402281.1| - 3.5e-05 23.8 0.1 6.1e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_IclR PF09339.10 gi|284164002|ref|YP_003402281.1| - 0.0014 18.4 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284164002|ref|YP_003402281.1| - 0.0023 17.8 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284164002|ref|YP_003402281.1| - 0.0039 16.7 0.0 0.0076 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|284164002|ref|YP_003402281.1| - 0.004 16.9 0.0 0.0082 15.9 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|284164002|ref|YP_003402281.1| - 0.0082 16.0 0.0 0.022 14.7 0.0 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|284164002|ref|YP_003402281.1| - 0.022 14.4 0.0 0.041 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|284164002|ref|YP_003402281.1| - 0.03 14.4 0.0 0.086 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164002|ref|YP_003402281.1| - 0.059 13.3 0.0 0.33 11.0 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|284164002|ref|YP_003402281.1| - 0.074 13.6 0.0 0.18 12.3 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|284164002|ref|YP_003402281.1| - 0.12 12.3 0.2 0.32 11.0 0.2 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Formyl_trans_N PF00551.19 gi|284164003|ref|YP_003402282.1| - 2.7e-09 37.0 0.0 3.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ApbA PF02558.16 gi|284164004|ref|YP_003402283.1| - 3.1e-42 143.8 0.0 4.3e-42 143.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 gi|284164004|ref|YP_003402283.1| - 2.2e-26 92.5 0.0 3.1e-26 92.0 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.17 gi|284164004|ref|YP_003402283.1| - 0.00037 21.0 0.0 0.0014 19.2 0.0 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|284164004|ref|YP_003402283.1| - 0.00037 20.5 0.0 0.00063 19.7 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF287 PF03384.14 gi|284164004|ref|YP_003402283.1| - 0.065 13.6 1.6 16 6.0 0.0 2.9 3 0 0 3 3 3 0 Drosophila protein of unknown function, DUF287 UDPG_MGDP_dh_N PF03721.14 gi|284164004|ref|YP_003402283.1| - 0.087 12.4 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|284164004|ref|YP_003402283.1| - 0.094 13.3 0.4 0.33 11.5 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|284164004|ref|YP_003402283.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF5591 PF17884.1 gi|284164005|ref|YP_003402284.1| - 2.5e-58 196.3 0.0 3.7e-58 195.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|284164005|ref|YP_003402284.1| - 8.2e-23 80.3 0.0 3.5e-22 78.3 0.0 2.1 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|284164005|ref|YP_003402284.1| - 3.1e-13 49.6 0.1 1.7e-12 47.2 0.1 2.1 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|284164005|ref|YP_003402284.1| - 3.4e-11 42.9 0.3 9.1e-11 41.6 0.3 1.6 1 0 0 1 1 1 1 PUA domain A2L_zn_ribbon PF08792.10 gi|284164006|ref|YP_003402285.1| - 5.7e-05 22.7 1.9 7.3e-05 22.4 1.9 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|284164006|ref|YP_003402285.1| - 0.00044 20.2 2.2 0.00049 20.1 2.2 1.0 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.7 gi|284164006|ref|YP_003402285.1| - 0.0005 20.0 1.3 0.0005 20.0 1.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|284164006|ref|YP_003402285.1| - 0.00096 18.6 4.1 0.042 13.4 0.2 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|284164006|ref|YP_003402285.1| - 0.001 18.9 0.9 0.032 14.2 0.9 2.1 1 1 0 1 1 1 1 Nudix N-terminal zf-C4_Topoisom PF01396.19 gi|284164006|ref|YP_003402285.1| - 0.0011 18.7 2.4 0.095 12.5 2.3 2.1 1 1 1 2 2 2 1 Topoisomerase DNA binding C4 zinc finger PhnA_Zn_Ribbon PF08274.12 gi|284164006|ref|YP_003402285.1| - 0.0013 18.6 2.6 0.0018 18.2 2.6 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|284164006|ref|YP_003402285.1| - 0.0023 17.8 1.5 0.0024 17.8 1.5 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|284164006|ref|YP_003402285.1| - 0.0026 17.1 5.7 0.091 12.2 5.4 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-IS66 PF13005.7 gi|284164006|ref|YP_003402285.1| - 0.0027 18.0 1.5 1.4 9.4 0.2 2.1 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.6 gi|284164006|ref|YP_003402285.1| - 0.0028 17.3 3.5 0.015 15.0 3.5 1.9 1 1 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284164006|ref|YP_003402285.1| - 0.004 17.2 3.4 0.0062 16.6 3.4 1.4 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|284164006|ref|YP_003402285.1| - 0.007 16.4 1.1 0.007 16.4 1.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|284164006|ref|YP_003402285.1| - 0.0087 15.6 1.6 0.38 10.4 0.2 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|284164006|ref|YP_003402285.1| - 0.011 15.7 1.0 0.012 15.5 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons DUF1451 PF07295.11 gi|284164006|ref|YP_003402285.1| - 0.02 14.9 2.0 0.022 14.8 2.0 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-C3HC4_3 PF13920.6 gi|284164006|ref|YP_003402285.1| - 0.021 14.7 0.6 0.023 14.5 0.6 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RNHCP PF12647.7 gi|284164006|ref|YP_003402285.1| - 0.025 14.5 1.8 0.026 14.5 1.8 1.0 1 0 0 1 1 1 0 RNHCP domain TFIIS_C PF01096.18 gi|284164006|ref|YP_003402285.1| - 0.033 14.1 3.7 0.11 12.4 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) GFA PF04828.14 gi|284164006|ref|YP_003402285.1| - 0.043 14.2 2.0 0.76 10.1 1.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2072 PF09845.9 gi|284164006|ref|YP_003402285.1| - 0.043 14.1 1.8 0.052 13.8 1.8 1.0 1 0 0 1 1 1 0 Zn-ribbon containing protein Zn_Tnp_IS1595 PF12760.7 gi|284164006|ref|YP_003402285.1| - 0.054 13.5 3.9 1.4 9.0 4.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|284164006|ref|YP_003402285.1| - 0.055 14.1 3.8 4 8.2 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_SprT PF17283.2 gi|284164006|ref|YP_003402285.1| - 0.055 13.4 5.8 0.4 10.6 1.2 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|284164006|ref|YP_003402285.1| - 0.057 13.1 2.4 0.084 12.6 2.4 1.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF35_N PF12172.8 gi|284164006|ref|YP_003402285.1| - 0.07 13.0 3.6 4 7.4 0.8 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Sgf11 PF08209.11 gi|284164006|ref|YP_003402285.1| - 0.07 12.7 2.4 0.17 11.5 0.2 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Spt4 PF06093.13 gi|284164006|ref|YP_003402285.1| - 0.071 13.2 0.3 0.086 13.0 0.3 1.3 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Rubredoxin_2 PF18073.1 gi|284164006|ref|YP_003402285.1| - 0.091 12.5 6.2 1.8 8.3 6.2 2.1 1 1 0 1 1 1 0 Rubredoxin metal binding domain YhfH PF14149.6 gi|284164006|ref|YP_003402285.1| - 0.23 11.5 4.7 8.3 6.5 4.3 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-Mss51 PF13824.6 gi|284164006|ref|YP_003402285.1| - 0.25 11.5 5.9 2.9 8.0 0.8 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Kp4 PF09044.10 gi|284164006|ref|YP_003402285.1| - 0.33 11.0 0.3 0.33 11.0 0.3 1.9 1 1 1 2 2 2 0 Kp4 Ribosomal_L32p PF01783.23 gi|284164006|ref|YP_003402285.1| - 0.58 10.5 3.3 1 9.7 3.3 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family RNA_POL_M_15KD PF02150.16 gi|284164006|ref|YP_003402285.1| - 1 9.3 5.6 3.3 7.7 0.7 1.9 1 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit FdhE PF04216.12 gi|284164006|ref|YP_003402285.1| - 1.3 8.8 5.0 4.1 7.2 0.5 1.8 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation zf-HYPF PF07503.12 gi|284164006|ref|YP_003402285.1| - 3.6 7.4 8.7 6.5 6.6 0.8 2.4 1 1 1 2 2 2 0 HypF finger HTH_24 PF13412.6 gi|284164008|ref|YP_003402287.1| - 2e-13 49.7 0.2 1.1e-12 47.3 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284164008|ref|YP_003402287.1| - 5e-13 48.6 0.4 1.1e-12 47.5 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284164008|ref|YP_003402287.1| - 1.5e-06 28.1 0.1 1.9e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|284164008|ref|YP_003402287.1| - 5.4e-06 26.4 0.2 2.3e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284164008|ref|YP_003402287.1| - 0.00017 22.0 0.2 0.00097 19.6 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284164008|ref|YP_003402287.1| - 0.00021 21.1 0.4 0.007 16.2 0.0 2.3 2 0 0 2 2 2 1 MarR family PaaX PF07848.12 gi|284164008|ref|YP_003402287.1| - 0.00095 19.3 0.2 0.37 11.0 0.1 2.3 2 0 0 2 2 2 1 PaaX-like protein HTH_28 PF13518.6 gi|284164008|ref|YP_003402287.1| - 0.0013 18.8 0.1 0.0028 17.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164008|ref|YP_003402287.1| - 0.0021 18.0 0.1 0.013 15.4 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_CodY PF08222.11 gi|284164008|ref|YP_003402287.1| - 0.0027 17.2 0.3 0.0066 16.0 0.1 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284164008|ref|YP_003402287.1| - 0.0055 16.9 0.0 0.11 12.8 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|284164008|ref|YP_003402287.1| - 0.0063 16.2 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|284164008|ref|YP_003402287.1| - 0.012 15.4 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DDRGK PF09756.9 gi|284164008|ref|YP_003402287.1| - 0.018 14.6 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_30 PF13556.6 gi|284164008|ref|YP_003402287.1| - 0.023 14.5 0.1 0.1 12.4 0.1 2.1 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|284164008|ref|YP_003402287.1| - 0.027 14.1 0.1 0.082 12.6 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 TrmB PF01978.19 gi|284164008|ref|YP_003402287.1| - 0.03 14.2 0.0 0.082 12.8 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|284164008|ref|YP_003402287.1| - 0.046 13.2 0.1 0.088 12.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.21 gi|284164008|ref|YP_003402287.1| - 0.046 13.4 2.0 0.13 12.0 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|284164008|ref|YP_003402287.1| - 0.064 13.6 0.0 0.17 12.2 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_36 PF13730.6 gi|284164008|ref|YP_003402287.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|284164008|ref|YP_003402287.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 HTH DNA binding domain TxDE PF18711.1 gi|284164008|ref|YP_003402287.1| - 0.13 12.4 0.2 1.7 8.9 0.0 2.2 2 0 0 2 2 2 0 Toxoflavin-degrading enzyme HalOD1 PF18545.1 gi|284164009|ref|YP_003402288.1| - 3.5e-24 84.9 0.0 4.9e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TGT PF01702.18 gi|284164010|ref|YP_003402289.1| - 7.6e-78 262.1 0.0 1e-77 261.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|284164010|ref|YP_003402289.1| - 0.034 14.4 0.2 3.6 8.0 0.0 2.4 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Pentapeptide_4 PF13599.6 gi|284164011|ref|YP_003402290.1| - 0.1 12.8 0.7 1.2 9.3 0.1 2.9 2 1 1 3 3 3 0 Pentapeptide repeats (9 copies) NUDIX PF00293.28 gi|284164013|ref|YP_003402292.1| - 7.1e-10 39.0 0.5 9.2e-10 38.7 0.5 1.2 1 0 0 1 1 1 1 NUDIX domain PadR PF03551.14 gi|284164014|ref|YP_003402293.1| - 1e-13 51.0 0.2 1.2e-13 50.8 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|284164014|ref|YP_003402293.1| - 0.00037 20.9 0.0 0.0005 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|284164014|ref|YP_003402293.1| - 0.00097 19.1 0.0 0.0073 16.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.6 gi|284164014|ref|YP_003402293.1| - 0.0011 19.0 0.0 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|284164014|ref|YP_003402293.1| - 0.0063 16.3 0.0 0.0075 16.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|284164014|ref|YP_003402293.1| - 0.02 14.7 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF505 PF04458.12 gi|284164014|ref|YP_003402293.1| - 0.14 10.5 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4397 PF14344.6 gi|284164016|ref|YP_003402295.1| - 8e-31 107.3 8.2 3.7e-15 56.8 0.3 3.7 3 1 1 4 4 4 3 Domain of unknown function (DUF4397) TAT_signal PF10518.9 gi|284164016|ref|YP_003402295.1| - 0.23 11.4 2.0 0.55 10.2 2.0 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Apolipoprotein PF01442.18 gi|284164017|ref|YP_003402296.1| - 0.063 13.2 0.6 22 4.8 0.0 3.0 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain Polysacc_deac_1 PF01522.21 gi|284164018|ref|YP_003402297.1| - 1.6e-13 50.7 0.0 2.5e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase TAT_signal PF10518.9 gi|284164019|ref|YP_003402298.1| - 5.4e-05 22.9 3.3 7.5e-05 22.4 3.3 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Herpes_LMP1 PF05297.11 gi|284164019|ref|YP_003402298.1| - 0.68 9.1 7.9 0.71 9.0 7.9 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Nop14 PF04147.12 gi|284164019|ref|YP_003402298.1| - 8.8 4.4 12.3 8.6 4.4 12.3 1.0 1 0 0 1 1 1 0 Nop14-like family Putative_PNPOx PF01243.20 gi|284164021|ref|YP_003402300.1| - 9.3e-17 61.0 0.0 1.2e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|284164021|ref|YP_003402300.1| - 3e-08 33.8 0.2 3.8e-08 33.4 0.2 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|284164021|ref|YP_003402300.1| - 0.0028 17.2 0.0 0.0034 17.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like HTH_24 PF13412.6 gi|284164023|ref|YP_003402302.1| - 4.5e-11 42.1 0.1 7.3e-11 41.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284164023|ref|YP_003402302.1| - 1.1e-10 41.2 1.5 1.1e-10 41.1 0.2 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284164023|ref|YP_003402302.1| - 1.9e-06 27.7 0.0 4.1e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|284164023|ref|YP_003402302.1| - 0.00029 20.8 0.0 0.00064 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284164023|ref|YP_003402302.1| - 0.00042 20.0 0.2 0.0021 17.8 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|284164023|ref|YP_003402302.1| - 0.0015 18.4 0.0 0.0036 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284164023|ref|YP_003402302.1| - 0.025 14.5 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Tnp_ISL3 PF13542.6 gi|284164023|ref|YP_003402302.1| - 0.067 12.6 0.0 0.21 11.0 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 AGS_C PF18134.1 gi|284164024|ref|YP_003402303.1| - 0.065 13.2 0.1 0.081 12.9 0.1 1.2 1 0 0 1 1 1 0 Adenylyl/Guanylyl and SMODS C-terminal sensor domain TPP_enzyme_N PF02776.18 gi|284164025|ref|YP_003402304.1| - 1.2e-53 181.2 0.0 3.3e-53 179.8 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|284164025|ref|YP_003402304.1| - 7.3e-34 116.8 0.1 9.6e-33 113.1 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|284164025|ref|YP_003402304.1| - 2.1e-33 114.9 0.1 5e-33 113.7 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Methyltrn_RNA_2 PF04013.12 gi|284164026|ref|YP_003402305.1| - 1.5e-56 191.2 0.0 1.7e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Prok-RING_1 PF14446.6 gi|284164027|ref|YP_003402306.1| - 0.14 12.1 2.9 0.23 11.4 2.9 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Trypsin_2 PF13365.6 gi|284164030|ref|YP_003402309.1| - 3e-30 106.1 1.8 3e-30 106.1 1.8 1.6 2 0 0 2 2 2 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|284164030|ref|YP_003402309.1| - 4.5e-14 52.8 0.1 1.7e-13 50.9 0.1 1.8 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|284164030|ref|YP_003402309.1| - 1.3e-11 44.6 0.0 2.8e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 PDZ domain UCR_Fe-S_N PF10399.9 gi|284164030|ref|YP_003402309.1| - 0.0054 16.0 0.1 0.013 14.9 0.1 1.6 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Pico_P2A PF00947.19 gi|284164030|ref|YP_003402309.1| - 0.0079 16.2 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Picornavirus core protein 2A Tricorn_PDZ PF14685.6 gi|284164030|ref|YP_003402309.1| - 0.085 12.8 0.1 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Tricorn protease PDZ domain PDZ PF00595.24 gi|284164030|ref|YP_003402309.1| - 0.12 12.7 0.0 28 5.2 0.0 2.5 2 0 0 2 2 2 0 PDZ domain THUMP PF02926.17 gi|284164031|ref|YP_003402310.1| - 4.2e-07 30.2 0.2 1.7e-06 28.2 0.0 2.0 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|284164031|ref|YP_003402310.1| - 0.00015 22.0 2.9 0.0014 18.9 1.6 2.7 3 0 0 3 3 3 1 DnaJ central domain HypA PF01155.19 gi|284164031|ref|YP_003402310.1| - 0.15 12.1 0.0 0.58 10.2 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|284164031|ref|YP_003402310.1| - 0.23 11.5 8.1 0.42 10.6 4.5 2.9 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein RNase_HII PF01351.18 gi|284164032|ref|YP_003402311.1| - 5.9e-36 124.2 0.0 7.1e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII HRG PF16954.5 gi|284164033|ref|YP_003402312.1| - 3.5 8.1 7.2 0.56 10.6 1.3 2.2 2 0 0 2 2 2 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene Na_Ca_ex PF01699.24 gi|284164034|ref|YP_003402313.1| - 1.5e-37 128.8 37.3 4.4e-20 72.2 18.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SecD_SecF PF02355.16 gi|284164035|ref|YP_003402314.1| - 2.2e-14 53.3 5.8 4.6e-14 52.2 5.8 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|284164035|ref|YP_003402314.1| - 0.0038 16.2 15.0 0.0082 15.1 15.0 1.5 1 0 0 1 1 1 1 MMPL family SecD_SecF PF02355.16 gi|284164036|ref|YP_003402315.1| - 1e-28 100.1 9.7 1e-28 100.1 9.7 1.4 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|284164036|ref|YP_003402315.1| - 5.1e-05 22.6 1.5 5.4e-05 22.5 0.1 1.9 2 0 0 2 2 2 1 SecD/SecF GG Motif ACR_tran PF00873.19 gi|284164036|ref|YP_003402315.1| - 0.0012 16.7 9.1 0.0021 15.8 9.1 1.4 1 1 0 1 1 1 1 AcrB/AcrD/AcrF family DFP PF04127.15 gi|284164036|ref|YP_003402315.1| - 0.032 14.1 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Patched PF02460.18 gi|284164036|ref|YP_003402315.1| - 0.67 7.9 11.6 0.43 8.6 9.9 1.5 1 1 0 1 1 1 0 Patched family PrgI PF12666.7 gi|284164036|ref|YP_003402315.1| - 6.3 7.6 16.9 5.6 7.7 5.3 3.2 3 0 0 3 3 3 0 PrgI family protein CinA_KH PF18146.1 gi|284164038|ref|YP_003402317.1| - 0.11 12.6 0.8 0.22 11.7 0.2 1.8 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Response_reg PF00072.24 gi|284164040|ref|YP_003402319.1| - 2.1e-14 53.6 0.0 2.5e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain DUF5612 PF18462.1 gi|284164040|ref|YP_003402319.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) LSDAT_euk PF18139.1 gi|284164040|ref|YP_003402319.1| - 0.26 10.6 0.0 0.3 10.4 0.0 1.3 1 1 0 1 1 1 0 SLOG in TRPM TrmB PF01978.19 gi|284164041|ref|YP_003402320.1| - 2.3e-20 72.2 0.1 6.3e-20 70.8 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284164041|ref|YP_003402320.1| - 0.00015 21.8 0.0 0.0017 18.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284164041|ref|YP_003402320.1| - 0.0012 19.3 0.3 0.0071 16.8 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284164041|ref|YP_003402320.1| - 0.0018 18.1 0.2 0.019 14.8 0.0 2.5 2 0 0 2 2 2 1 MarR family Cdc6_C PF09079.11 gi|284164041|ref|YP_003402320.1| - 0.0046 16.9 0.3 0.012 15.5 0.1 1.8 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain E2F_TDP PF02319.20 gi|284164041|ref|YP_003402320.1| - 0.005 16.9 0.0 0.0098 15.9 0.0 1.5 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain GntR PF00392.21 gi|284164041|ref|YP_003402320.1| - 0.011 15.4 0.0 0.046 13.4 0.0 2.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|284164041|ref|YP_003402320.1| - 0.011 15.5 0.0 0.03 14.1 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain PadR PF03551.14 gi|284164041|ref|YP_003402320.1| - 0.075 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PGI PF00342.19 gi|284164042|ref|YP_003402321.1| - 7e-28 97.5 0.0 4.7e-24 84.8 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase CPBP PF02517.16 gi|284164043|ref|YP_003402322.1| - 6.9e-16 58.4 2.4 6.9e-16 58.4 2.4 3.1 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease PIN_6 PF17146.4 gi|284164044|ref|YP_003402323.1| - 1.5e-12 47.9 0.1 3.2e-12 46.8 0.1 1.6 2 0 0 2 2 2 1 PIN domain of ribonuclease Zn-ribbon_8 PF09723.10 gi|284164044|ref|YP_003402323.1| - 7.2e-05 22.8 2.6 0.00018 21.5 2.6 1.7 1 0 0 1 1 1 1 Zinc ribbon domain PIN_5 PF08745.11 gi|284164044|ref|YP_003402323.1| - 7.9e-05 22.2 1.5 9.1e-05 22.0 0.8 1.5 1 1 1 2 2 2 1 PINc domain ribonuclease zinc-ribbons_6 PF07191.12 gi|284164044|ref|YP_003402323.1| - 0.0024 17.8 0.9 0.0038 17.2 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbons DNA_ligase_ZBD PF03119.16 gi|284164044|ref|YP_003402323.1| - 0.0026 17.7 1.5 0.037 14.0 0.2 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.19 gi|284164044|ref|YP_003402323.1| - 0.0035 17.3 1.9 0.0046 17.0 1.9 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|284164044|ref|YP_003402323.1| - 0.0068 16.2 1.5 0.0096 15.8 1.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_15 PF17032.5 gi|284164044|ref|YP_003402323.1| - 0.008 16.9 0.2 0.011 16.4 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|284164044|ref|YP_003402323.1| - 0.0085 16.1 0.3 0.013 15.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF3663 PF12404.8 gi|284164044|ref|YP_003402323.1| - 0.012 15.7 0.0 0.037 14.1 0.0 1.8 2 0 0 2 2 2 0 Peptidase Prok-RING_4 PF14447.6 gi|284164044|ref|YP_003402323.1| - 0.02 14.8 0.7 0.075 12.9 1.5 1.6 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 NOB1_Zn_bind PF08772.11 gi|284164044|ref|YP_003402323.1| - 0.036 14.2 0.4 0.066 13.4 0.4 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Rad50_zn_hook PF04423.14 gi|284164044|ref|YP_003402323.1| - 0.043 13.6 1.3 0.53 10.2 0.9 2.4 1 1 1 2 2 2 0 Rad50 zinc hook motif DUF4411 PF14367.6 gi|284164044|ref|YP_003402323.1| - 0.048 13.6 0.1 0.57 10.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) C1_2 PF03107.16 gi|284164044|ref|YP_003402323.1| - 0.05 13.9 0.3 0.1 13.0 0.3 1.5 1 0 0 1 1 1 0 C1 domain Prok-RING_1 PF14446.6 gi|284164044|ref|YP_003402323.1| - 0.099 12.6 3.2 0.21 11.5 3.2 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1 PF03811.13 gi|284164044|ref|YP_003402323.1| - 0.14 11.9 2.8 0.28 10.9 0.2 2.5 3 0 0 3 3 3 0 InsA N-terminal domain CpXC PF14353.6 gi|284164044|ref|YP_003402323.1| - 0.19 11.7 1.2 4 7.5 0.0 2.8 1 1 2 3 3 3 0 CpXC protein zf-C2H2_4 PF13894.6 gi|284164044|ref|YP_003402323.1| - 0.21 12.5 1.6 9.5 7.4 0.2 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.6 gi|284164044|ref|YP_003402323.1| - 0.29 11.1 0.5 0.29 11.1 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C3HC4_2 PF13923.6 gi|284164044|ref|YP_003402323.1| - 0.29 11.0 2.6 0.53 10.2 2.6 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_ribbon_SprT PF17283.2 gi|284164044|ref|YP_003402323.1| - 0.35 10.8 4.7 4.5 7.3 4.7 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2H2 PF00096.26 gi|284164044|ref|YP_003402323.1| - 0.4 11.2 3.3 1.8 9.2 0.2 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.6 gi|284164044|ref|YP_003402323.1| - 0.59 10.1 6.3 9.7 6.2 0.5 3.2 3 0 0 3 3 3 0 Nudix N-terminal YhfH PF14149.6 gi|284164044|ref|YP_003402323.1| - 0.64 10.0 4.9 1.2 9.2 1.1 2.3 1 1 1 2 2 2 0 YhfH-like protein PRC PF05239.16 gi|284164045|ref|YP_003402324.1| - 6.2e-12 45.4 0.2 7.1e-12 45.2 0.2 1.1 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.27 gi|284164046|ref|YP_003402325.1| - 1.6e-31 109.3 0.0 1.3e-30 106.4 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|284164046|ref|YP_003402325.1| - 7.6e-25 86.6 0.9 2e-24 85.3 0.2 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|284164046|ref|YP_003402325.1| - 1e-22 80.2 2.7 2.3e-22 79.1 1.5 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|284164046|ref|YP_003402325.1| - 3.1e-14 53.1 9.6 1.2e-10 41.6 0.2 3.1 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|284164046|ref|YP_003402325.1| - 2.4e-08 34.0 0.0 7.1e-08 32.5 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|284164046|ref|YP_003402325.1| - 0.0018 18.4 0.2 0.22 11.6 0.0 2.6 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|284164046|ref|YP_003402325.1| - 0.014 15.2 0.0 0.055 13.2 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|284164046|ref|YP_003402325.1| - 0.087 13.1 0.0 0.36 11.0 0.0 2.1 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SH3_9 PF14604.6 gi|284164046|ref|YP_003402325.1| - 0.18 11.7 1.3 19 5.2 0.0 3.1 3 0 0 3 3 3 0 Variant SH3 domain Delta_lysin PF05372.11 gi|284164046|ref|YP_003402325.1| - 0.3 10.4 0.9 0.9 8.9 0.9 1.8 1 0 0 1 1 1 0 Delta lysin family MazG PF03819.17 gi|284164046|ref|YP_003402325.1| - 6.1 7.1 10.2 29 4.9 0.9 3.8 3 0 0 3 3 3 0 MazG nucleotide pyrophosphohydrolase domain Cyclophil_like PF04126.13 gi|284164047|ref|YP_003402326.1| - 5e-28 97.3 0.0 5.4e-28 97.2 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|284164047|ref|YP_003402326.1| - 0.0082 16.1 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 Cyclophilin-like family DUF3830 PF12903.7 gi|284164047|ref|YP_003402326.1| - 0.0091 15.7 0.1 0.011 15.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3830) bPH_6 PF10756.9 gi|284164048|ref|YP_003402327.1| - 2e-05 24.6 1.6 5e-05 23.3 1.6 1.7 1 0 0 1 1 1 1 Bacterial PH domain DUF3483 PF11982.8 gi|284164048|ref|YP_003402327.1| - 2.7 7.6 13.3 0.28 10.8 5.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3483) CTP_synth_N PF06418.14 gi|284164050|ref|YP_003402329.1| - 2.4e-125 417.2 0.1 3.1e-125 416.8 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|284164050|ref|YP_003402329.1| - 7.9e-53 179.1 0.0 1.4e-52 178.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284164050|ref|YP_003402329.1| - 1.7e-05 24.7 0.0 6.5e-05 22.8 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|284164050|ref|YP_003402329.1| - 0.0024 17.9 0.0 0.0032 17.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GMP_synt_C PF00958.22 gi|284164051|ref|YP_003402330.1| - 1e-28 99.2 0.5 4.8e-28 97.1 0.1 2.1 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|284164051|ref|YP_003402330.1| - 6.8e-09 35.2 0.0 4.4e-05 22.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|284164051|ref|YP_003402330.1| - 4.5e-05 22.4 0.0 0.002 17.0 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|284164051|ref|YP_003402330.1| - 0.0058 16.7 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|284164051|ref|YP_003402330.1| - 0.0099 15.4 0.0 0.034 13.6 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Arginosuc_synth PF00764.19 gi|284164051|ref|YP_003402330.1| - 0.024 13.9 0.1 0.035 13.4 0.1 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase Asn_synthase PF00733.21 gi|284164051|ref|YP_003402330.1| - 0.035 13.7 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.14 gi|284164051|ref|YP_003402330.1| - 0.036 13.6 0.0 0.14 11.8 0.0 1.9 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) 5-FTHF_cyc-lig PF01812.20 gi|284164053|ref|YP_003402332.1| - 1.1e-24 87.4 0.0 3.4e-11 43.3 0.1 2.1 2 0 0 2 2 2 2 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.24 gi|284164054|ref|YP_003402333.1| - 6.5e-22 77.7 0.2 8.9e-22 77.3 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.26 gi|284164055|ref|YP_003402334.1| - 6.9e-36 123.1 0.0 1.2e-35 122.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284164055|ref|YP_003402334.1| - 3.3e-21 76.7 0.0 5.2e-21 76.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284164055|ref|YP_003402334.1| - 7.9e-16 57.9 0.0 2e-15 56.6 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|284164055|ref|YP_003402334.1| - 0.007 15.8 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|284164055|ref|YP_003402334.1| - 0.015 14.6 1.8 0.017 14.4 0.2 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain RmlD_sub_bind PF04321.17 gi|284164055|ref|YP_003402334.1| - 0.039 13.1 0.1 0.17 10.9 0.0 1.8 1 1 1 2 2 2 0 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.8 gi|284164055|ref|YP_003402334.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF4381 PF14316.6 gi|284164056|ref|YP_003402335.1| - 2.6 8.3 8.9 1.8 8.8 6.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) Peptidase_M24 PF00557.24 gi|284164057|ref|YP_003402336.1| - 3.3e-07 30.2 0.3 5.1e-07 29.6 0.3 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|284164057|ref|YP_003402336.1| - 0.0013 19.4 0.0 0.004 17.8 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain zf-HC2 PF13490.6 gi|284164058|ref|YP_003402337.1| - 3 8.2 5.8 16 5.8 0.1 3.3 3 1 0 3 3 3 0 Putative zinc-finger Sulfatase PF00884.23 gi|284164059|ref|YP_003402338.1| - 0.04 13.3 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 Sulfatase Methyltransf_24 PF13578.6 gi|284164060|ref|YP_003402339.1| - 1.5e-14 54.9 0.5 3.4e-14 53.7 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain TPR_14 PF13428.6 gi|284164061|ref|YP_003402340.1| - 1 10.3 5.7 17 6.5 0.0 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat Methyltransf_11 PF08241.12 gi|284164062|ref|YP_003402341.1| - 2.3e-25 89.0 0.1 3.4e-25 88.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164062|ref|YP_003402341.1| - 5.3e-24 84.9 0.0 7.8e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164062|ref|YP_003402341.1| - 4.4e-23 81.8 0.0 5.4e-23 81.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164062|ref|YP_003402341.1| - 4.9e-23 81.6 0.1 8e-23 81.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164062|ref|YP_003402341.1| - 3.3e-16 59.8 0.0 5.5e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164062|ref|YP_003402341.1| - 2.2e-13 50.1 0.0 5.6e-13 48.8 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|284164062|ref|YP_003402341.1| - 1e-09 38.1 0.0 1.6e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|284164062|ref|YP_003402341.1| - 2.7e-06 27.1 0.0 5.5e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|284164062|ref|YP_003402341.1| - 1.4e-05 25.0 0.0 1.7e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|284164062|ref|YP_003402341.1| - 2.5e-05 24.2 0.1 0.0015 18.4 0.1 2.2 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|284164062|ref|YP_003402341.1| - 3e-05 22.8 0.0 3.9e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|284164062|ref|YP_003402341.1| - 0.00016 20.7 0.0 0.00022 20.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|284164062|ref|YP_003402341.1| - 0.0002 20.8 0.0 0.00026 20.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) N6_N4_Mtase PF01555.18 gi|284164062|ref|YP_003402341.1| - 0.0055 16.4 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 1 DNA methylase MTS PF05175.14 gi|284164062|ref|YP_003402341.1| - 0.017 14.7 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Pox_MCEL PF03291.16 gi|284164062|ref|YP_003402341.1| - 0.017 14.2 0.0 0.022 13.9 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_4 PF02390.17 gi|284164062|ref|YP_003402341.1| - 0.018 14.5 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.11 gi|284164062|ref|YP_003402341.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) FtsJ PF01728.19 gi|284164062|ref|YP_003402341.1| - 0.026 14.7 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase CheR PF01739.18 gi|284164062|ref|YP_003402341.1| - 0.029 13.8 0.0 1.7 8.1 0.0 2.5 2 1 1 3 3 3 0 CheR methyltransferase, SAM binding domain NodS PF05401.11 gi|284164062|ref|YP_003402341.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) NNMT_PNMT_TEMT PF01234.17 gi|284164062|ref|YP_003402341.1| - 0.065 12.4 0.0 2.2 7.4 0.0 2.1 1 1 1 2 2 2 0 NNMT/PNMT/TEMT family Methyltransf_18 PF12847.7 gi|284164062|ref|YP_003402341.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|284164062|ref|YP_003402341.1| - 0.085 12.5 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Peptidase_M55 PF04951.13 gi|284164062|ref|YP_003402341.1| - 0.19 11.1 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 D-aminopeptidase Methyltransf_15 PF09445.10 gi|284164062|ref|YP_003402341.1| - 0.2 11.2 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Glycos_transf_1 PF00534.20 gi|284164063|ref|YP_003402342.1| - 5.5e-35 120.4 0.0 7.6e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284164063|ref|YP_003402342.1| - 4.6e-31 108.0 0.3 7.7e-31 107.3 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284164063|ref|YP_003402342.1| - 1.6e-26 93.3 2.1 2.8e-26 92.5 0.5 2.2 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284164063|ref|YP_003402342.1| - 2.5e-21 76.8 3.8 2.5e-21 76.8 3.8 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|284164063|ref|YP_003402342.1| - 1.9e-13 50.6 0.0 3.8e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|284164063|ref|YP_003402342.1| - 0.0045 15.7 0.0 0.0064 15.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 NUDIX PF00293.28 gi|284164064|ref|YP_003402343.1| - 9.8e-16 58.0 0.6 1.3e-15 57.6 0.6 1.2 1 0 0 1 1 1 1 NUDIX domain DAGK_cat PF00781.24 gi|284164065|ref|YP_003402344.1| - 4.2e-23 81.3 0.9 6.5e-23 80.7 0.9 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain PHP_C PF13263.6 gi|284164066|ref|YP_003402345.1| - 6e-21 74.0 0.6 4.2e-20 71.2 0.0 2.6 3 0 0 3 3 3 1 PHP-associated HTH_AsnC-type PF13404.6 gi|284164068|ref|YP_003402347.1| - 2.3e-19 68.9 1.9 1.5e-17 63.1 0.6 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284164068|ref|YP_003402347.1| - 6.1e-16 57.7 0.2 7.1e-15 54.3 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|284164068|ref|YP_003402347.1| - 5.3e-10 39.1 1.0 5.3e-10 39.1 1.0 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain Sigma70_r4 PF04545.16 gi|284164068|ref|YP_003402347.1| - 0.00015 21.2 0.1 0.00025 20.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|284164068|ref|YP_003402347.1| - 0.00017 21.2 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|284164068|ref|YP_003402347.1| - 0.00023 20.5 0.1 0.00052 19.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 gi|284164068|ref|YP_003402347.1| - 0.0003 20.8 0.0 0.00054 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284164068|ref|YP_003402347.1| - 0.00057 19.7 0.1 0.0021 17.9 0.0 1.9 1 1 1 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|284164068|ref|YP_003402347.1| - 0.0015 18.3 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284164068|ref|YP_003402347.1| - 0.0023 17.8 0.1 0.0054 16.6 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|284164068|ref|YP_003402347.1| - 0.0029 17.5 0.3 0.009 15.9 0.0 1.9 2 1 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|284164068|ref|YP_003402347.1| - 0.0031 17.6 0.0 0.014 15.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284164068|ref|YP_003402347.1| - 0.0049 16.6 0.1 0.053 13.3 0.0 2.2 1 1 1 2 2 2 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|284164068|ref|YP_003402347.1| - 0.0051 16.6 0.0 0.0079 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF746 PF05344.11 gi|284164068|ref|YP_003402347.1| - 0.0059 16.4 0.1 0.18 11.6 0.0 2.4 2 0 0 2 2 2 1 Domain of Unknown Function (DUF746) HTH_23 PF13384.6 gi|284164068|ref|YP_003402347.1| - 0.0064 16.3 0.0 0.014 15.2 0.0 1.5 1 1 0 1 1 1 1 Homeodomain-like domain NapD PF03927.13 gi|284164068|ref|YP_003402347.1| - 0.0074 16.3 1.4 0.013 15.5 1.4 1.4 1 0 0 1 1 1 1 NapD protein GYD PF08734.11 gi|284164068|ref|YP_003402347.1| - 0.018 15.0 1.3 0.078 12.9 0.4 2.1 1 1 0 2 2 2 0 GYD domain HTH_27 PF13463.6 gi|284164068|ref|YP_003402347.1| - 0.02 15.4 0.1 0.21 12.1 0.1 2.2 1 1 1 2 2 2 0 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.15 gi|284164068|ref|YP_003402347.1| - 0.051 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GerE PF00196.19 gi|284164068|ref|YP_003402347.1| - 0.063 12.8 0.0 0.16 11.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|284164068|ref|YP_003402347.1| - 0.065 13.1 0.0 0.15 12.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family KorB PF08535.10 gi|284164068|ref|YP_003402347.1| - 0.084 12.9 0.2 2.5 8.2 0.0 2.1 2 0 0 2 2 2 0 KorB domain HTH_Mga PF08280.11 gi|284164068|ref|YP_003402347.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain CPSase_sm_chain PF00988.22 gi|284164069|ref|YP_003402348.1| - 3.7e-36 123.8 0.0 5e-35 120.1 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|284164069|ref|YP_003402348.1| - 1.4e-34 119.5 0.0 2.3e-34 118.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284164069|ref|YP_003402348.1| - 2.8e-06 27.2 0.4 0.00056 19.7 0.4 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|284164069|ref|YP_003402348.1| - 0.00027 20.8 0.2 0.0006 19.7 0.1 1.6 1 1 0 1 1 1 1 DJ-1/PfpI family NapD PF03927.13 gi|284164069|ref|YP_003402348.1| - 0.021 14.9 1.1 0.058 13.4 0.3 2.1 1 1 0 2 2 2 0 NapD protein Peripla_BP_2 PF01497.18 gi|284164070|ref|YP_003402349.1| - 3.8e-15 56.1 0.0 5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF3437 PF11919.8 gi|284164070|ref|YP_003402349.1| - 0.00024 21.0 0.1 0.00044 20.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3437) TAT_signal PF10518.9 gi|284164070|ref|YP_003402349.1| - 0.1 12.5 1.1 0.2 11.6 1.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pyr_redox_2 PF07992.14 gi|284164071|ref|YP_003402350.1| - 4e-07 29.6 0.3 1.4e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284164071|ref|YP_003402350.1| - 1.3e-05 24.5 0.8 2e-05 23.9 0.1 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|284164071|ref|YP_003402350.1| - 1.5e-05 24.4 0.1 3.1e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|284164071|ref|YP_003402350.1| - 2e-05 23.8 2.3 0.00034 19.8 0.2 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|284164071|ref|YP_003402350.1| - 0.00015 21.3 2.0 0.001 18.5 0.6 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284164071|ref|YP_003402350.1| - 0.00067 19.8 1.0 0.00089 19.4 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284164071|ref|YP_003402350.1| - 0.0018 17.1 0.1 0.0029 16.4 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|284164071|ref|YP_003402350.1| - 0.0097 15.2 0.0 0.067 12.4 0.0 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284164071|ref|YP_003402350.1| - 0.015 15.9 0.1 0.034 14.7 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284164071|ref|YP_003402350.1| - 0.028 13.7 0.1 0.057 12.6 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Lycopene_cycl PF05834.12 gi|284164071|ref|YP_003402350.1| - 0.05 12.6 0.1 0.05 12.6 0.1 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein DAO PF01266.24 gi|284164071|ref|YP_003402350.1| - 0.069 12.7 10.7 1.2 8.7 10.5 2.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|284164071|ref|YP_003402350.1| - 0.29 11.0 1.0 1.1 9.1 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_2 PF01497.18 gi|284164072|ref|YP_003402351.1| - 5e-15 55.7 0.0 7.2e-15 55.2 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|284164072|ref|YP_003402351.1| - 0.1 12.5 1.2 0.18 11.7 1.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PALP PF00291.25 gi|284164073|ref|YP_003402352.1| - 7.8e-59 199.5 2.3 8.9e-59 199.3 2.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|284164073|ref|YP_003402352.1| - 0.00035 20.6 0.8 0.003 17.6 0.8 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase AICARFT_IMPCHas PF01808.18 gi|284164075|ref|YP_003402354.1| - 2.9e-85 286.3 0.0 3.9e-85 285.9 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|284164075|ref|YP_003402354.1| - 8.1e-37 126.7 0.0 4e-35 121.2 0.0 2.4 1 1 0 1 1 1 1 Formyl transferase CoA_binding_2 PF13380.6 gi|284164075|ref|YP_003402354.1| - 0.02 15.4 0.2 4.4 7.8 0.0 3.3 3 0 0 3 3 3 0 CoA binding domain Toxin_25 PF08095.11 gi|284164075|ref|YP_003402354.1| - 0.14 12.1 0.2 0.36 10.8 0.2 1.7 1 0 0 1 1 1 0 Hefutoxin family Lyase_1 PF00206.20 gi|284164076|ref|YP_003402355.1| - 3.1e-52 177.9 0.0 4.8e-52 177.3 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|284164076|ref|YP_003402355.1| - 2.4e-41 140.4 0.0 4e-41 139.7 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal CPBP PF02517.16 gi|284164077|ref|YP_003402356.1| - 1.1e-15 57.8 2.5 1.1e-15 57.8 2.5 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF1453 PF07301.11 gi|284164078|ref|YP_003402357.1| - 0.0019 18.2 0.3 0.0038 17.2 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1453) ABC2_membrane_5 PF13346.6 gi|284164078|ref|YP_003402357.1| - 0.1 12.1 0.7 0.14 11.7 0.5 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein Bax1-I PF01027.20 gi|284164078|ref|YP_003402357.1| - 0.9 9.3 11.9 1.4 8.7 11.9 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4131 PF13567.6 gi|284164078|ref|YP_003402357.1| - 8.7 6.0 9.3 1.4 8.6 1.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_M20 PF01546.28 gi|284164079|ref|YP_003402358.1| - 1.1e-24 87.3 0.0 2.5e-24 86.2 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284164079|ref|YP_003402358.1| - 5.6e-16 58.4 0.1 1.1e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|284164079|ref|YP_003402358.1| - 0.012 15.3 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Peptidase family M28 DAP_epimerase PF01678.19 gi|284164080|ref|YP_003402359.1| - 7.3e-39 132.7 0.4 3.1e-19 69.3 0.3 2.1 2 0 0 2 2 2 2 Diaminopimelate epimerase Orn_Arg_deC_N PF02784.16 gi|284164081|ref|YP_003402360.1| - 6.7e-44 150.1 0.0 8.4e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|284164081|ref|YP_003402360.1| - 1.4e-23 83.0 0.0 1.6e-23 82.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|284164081|ref|YP_003402360.1| - 5.4e-09 36.0 0.0 9e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Radical_SAM PF04055.21 gi|284164081|ref|YP_003402360.1| - 0.0011 19.4 1.7 0.0081 16.6 0.4 2.6 2 1 0 2 2 2 1 Radical SAM superfamily THDPS_N_2 PF14805.6 gi|284164082|ref|YP_003402361.1| - 1e-23 83.3 1.2 1.7e-23 82.6 1.2 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|284164082|ref|YP_003402361.1| - 1.6e-11 43.5 8.6 0.00032 20.3 1.5 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284164082|ref|YP_003402361.1| - 1.2e-07 31.4 12.7 5e-05 23.0 0.6 3.6 3 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|284164083|ref|YP_003402362.1| - 2.4e-37 127.7 0.1 3.1e-37 127.3 0.1 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|284164083|ref|YP_003402362.1| - 1e-25 90.2 0.1 1.8e-25 89.4 0.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.13 gi|284164083|ref|YP_003402362.1| - 0.00073 19.2 0.1 0.0011 18.5 0.1 1.5 1 1 0 1 1 1 1 NmrA-like family CoA_binding PF02629.19 gi|284164083|ref|YP_003402362.1| - 0.005 17.5 1.1 0.016 15.9 0.4 2.0 2 0 0 2 2 2 1 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|284164083|ref|YP_003402362.1| - 0.0098 16.2 0.4 0.042 14.1 0.5 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|284164083|ref|YP_003402362.1| - 0.021 15.3 0.1 0.048 14.1 0.1 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|284164083|ref|YP_003402362.1| - 0.072 13.4 0.1 0.22 11.9 0.1 1.8 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|284164083|ref|YP_003402362.1| - 0.08 12.4 0.4 0.44 10.0 0.0 2.2 2 1 1 3 3 3 0 NAD dependent epimerase/dehydratase family GFO_IDH_MocA PF01408.22 gi|284164083|ref|YP_003402362.1| - 0.086 13.7 0.0 0.16 12.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DHDPS PF00701.22 gi|284164084|ref|YP_003402363.1| - 2.4e-91 305.5 0.0 2.7e-91 305.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|284164084|ref|YP_003402363.1| - 0.012 14.9 0.1 0.02 14.2 0.1 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Peptidase_M48 PF01435.18 gi|284164085|ref|YP_003402364.1| - 1.5e-35 122.8 0.0 2e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|284164085|ref|YP_003402364.1| - 2.9e-05 23.4 0.2 6.6e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 BlaR1 peptidase M56 KduI PF04962.12 gi|284164085|ref|YP_003402364.1| - 0.056 12.8 0.1 0.085 12.2 0.1 1.2 1 0 0 1 1 1 0 KduI/IolB family DUF2268 PF10026.9 gi|284164085|ref|YP_003402364.1| - 0.088 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.9 gi|284164085|ref|YP_003402364.1| - 0.22 11.4 0.0 0.31 10.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family NYN PF01936.18 gi|284164086|ref|YP_003402365.1| - 5e-38 130.9 0.2 6e-38 130.6 0.2 1.0 1 0 0 1 1 1 1 NYN domain Propep_M14 PF02244.16 gi|284164086|ref|YP_003402365.1| - 0.098 13.1 0.0 0.33 11.4 0.0 1.8 1 0 0 1 1 1 0 Carboxypeptidase activation peptide FMO-like PF00743.19 gi|284164086|ref|YP_003402365.1| - 0.19 10.1 0.0 0.26 9.7 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DUF308 PF03729.13 gi|284164087|ref|YP_003402366.1| - 0.0029 17.9 4.0 0.0035 17.7 4.0 1.1 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) CD20 PF04103.15 gi|284164087|ref|YP_003402366.1| - 0.0062 16.6 2.2 0.0083 16.2 2.2 1.1 1 0 0 1 1 1 1 CD20-like family DUF2892 PF11127.8 gi|284164087|ref|YP_003402366.1| - 0.048 13.7 7.8 0.065 13.3 7.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF373 PF04123.13 gi|284164087|ref|YP_003402366.1| - 0.41 10.0 3.1 0.44 9.9 3.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF872 PF05915.12 gi|284164087|ref|YP_003402366.1| - 0.45 10.7 3.0 1.3 9.2 0.2 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) TGT_C2 PF14810.6 gi|284164088|ref|YP_003402367.1| - 7.9e-27 93.2 0.0 1.7e-26 92.2 0.0 1.6 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|284164088|ref|YP_003402367.1| - 9.9e-17 60.7 0.3 1.5e-16 60.1 0.3 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|284164088|ref|YP_003402367.1| - 0.064 13.5 0.0 0.12 12.7 0.0 1.5 1 1 0 1 1 1 0 UPF0113 PUA domain NAC PF01849.18 gi|284164089|ref|YP_003402368.1| - 6.9e-15 54.8 0.3 9.5e-15 54.3 0.3 1.2 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|284164089|ref|YP_003402368.1| - 0.00038 20.2 0.2 0.00083 19.1 0.2 1.5 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.16 gi|284164089|ref|YP_003402368.1| - 0.073 12.8 0.1 0.2 11.4 0.1 1.8 1 0 0 1 1 1 0 CUE domain HOIP-UBA PF16678.5 gi|284164089|ref|YP_003402368.1| - 0.11 12.5 0.2 0.18 11.8 0.2 1.5 1 0 0 1 1 1 0 HOIP UBA domain pair UBA PF00627.31 gi|284164089|ref|YP_003402368.1| - 0.13 12.2 0.7 0.13 12.2 0.7 1.9 2 0 0 2 2 2 0 UBA/TS-N domain GCD14 PF08704.10 gi|284164090|ref|YP_003402369.1| - 1.9e-13 50.6 0.0 4.6e-11 42.9 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|284164090|ref|YP_003402369.1| - 2.6e-09 37.0 0.0 3.4e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|284164090|ref|YP_003402369.1| - 2.9e-08 33.5 0.2 4e-08 33.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|284164090|ref|YP_003402369.1| - 5.8e-08 33.3 0.2 1.1e-07 32.4 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164090|ref|YP_003402369.1| - 2.7e-07 31.2 0.1 5e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|284164090|ref|YP_003402369.1| - 8.9e-07 29.9 0.1 1.9e-06 28.9 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284164090|ref|YP_003402369.1| - 3.4e-06 27.0 0.1 4.7e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|284164090|ref|YP_003402369.1| - 4.8e-06 26.2 0.1 9.7e-06 25.2 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|284164090|ref|YP_003402369.1| - 0.00021 21.2 0.0 0.00026 20.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|284164090|ref|YP_003402369.1| - 0.0004 19.5 0.0 0.00055 19.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.17 gi|284164090|ref|YP_003402369.1| - 0.00092 18.4 0.0 0.0012 18.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase ADH_zinc_N PF00107.26 gi|284164090|ref|YP_003402369.1| - 0.001 19.0 0.1 0.0015 18.5 0.1 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase CMAS PF02353.20 gi|284164090|ref|YP_003402369.1| - 0.0013 18.1 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|284164090|ref|YP_003402369.1| - 0.0027 17.3 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|284164090|ref|YP_003402369.1| - 0.0031 17.2 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|284164090|ref|YP_003402369.1| - 0.0041 16.9 0.0 0.0058 16.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.12 gi|284164090|ref|YP_003402369.1| - 0.0052 17.5 0.1 0.011 16.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|284164090|ref|YP_003402369.1| - 0.0093 15.9 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Mur_ligase PF01225.25 gi|284164090|ref|YP_003402369.1| - 0.02 15.2 0.1 0.14 12.5 0.0 2.1 2 0 0 2 2 2 0 Mur ligase family, catalytic domain DUF726 PF05277.12 gi|284164090|ref|YP_003402369.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Methyltransf_16 PF10294.9 gi|284164090|ref|YP_003402369.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase PPDK_N PF01326.19 gi|284164091|ref|YP_003402370.1| - 2.2e-108 362.5 0.2 3.3e-108 361.9 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|284164091|ref|YP_003402370.1| - 4.1e-83 278.9 0.0 5.9e-83 278.4 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|284164091|ref|YP_003402370.1| - 1.5e-27 95.1 2.7 4e-27 93.7 2.7 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|284164091|ref|YP_003402370.1| - 0.0036 16.5 0.0 0.0083 15.3 0.0 1.6 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family RdRP PF05183.12 gi|284164091|ref|YP_003402370.1| - 0.012 14.3 0.0 0.1 11.2 0.0 2.0 2 0 0 2 2 2 0 RNA dependent RNA polymerase Epimerase_2 PF02350.19 gi|284164091|ref|YP_003402370.1| - 0.056 12.3 0.0 0.16 10.8 0.0 1.7 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase RNA_POL_M_15KD PF02150.16 gi|284164092|ref|YP_003402371.1| - 0.07 13.0 2.0 0.096 12.6 0.4 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit BAT PF15915.5 gi|284164093|ref|YP_003402372.1| - 1.8e-23 83.2 0.2 2.5e-23 82.7 0.2 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284164093|ref|YP_003402372.1| - 3.4e-14 52.4 0.1 6e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.22 gi|284164093|ref|YP_003402372.1| - 0.0017 18.4 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|284164093|ref|YP_003402372.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family Lig_C PF18330.1 gi|284164093|ref|YP_003402372.1| - 0.11 12.5 0.1 0.68 10.0 0.1 2.2 2 1 0 2 2 2 0 Ligase Pab1020 C-terminal region HTH_24 PF13412.6 gi|284164093|ref|YP_003402372.1| - 0.16 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Glyco_tranf_2_3 PF13641.6 gi|284164094|ref|YP_003402373.1| - 1.2e-22 80.9 0.4 1.9e-22 80.3 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|284164094|ref|YP_003402373.1| - 1.2e-17 64.3 0.0 1.6e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|284164094|ref|YP_003402373.1| - 1e-15 58.2 0.4 1.8e-15 57.4 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|284164094|ref|YP_003402373.1| - 1.5e-09 37.6 0.0 2.3e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 ETF PF01012.21 gi|284164094|ref|YP_003402373.1| - 0.09 12.7 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Phage_holin_3_1 PF05106.12 gi|284164094|ref|YP_003402373.1| - 0.92 10.0 4.6 1.3 9.5 0.1 2.3 2 0 0 2 2 2 0 Phage holin family (Lysis protein S) Pyridoxal_deC PF00282.19 gi|284164095|ref|YP_003402374.1| - 1.5e-27 96.3 0.0 5.4e-27 94.5 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|284164095|ref|YP_003402374.1| - 1.1e-13 50.9 0.0 1.5e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.19 gi|284164095|ref|YP_003402374.1| - 1.4e-05 23.9 0.0 3.2e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|284164095|ref|YP_003402374.1| - 0.00032 20.1 0.0 0.00087 18.7 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|284164095|ref|YP_003402374.1| - 0.0043 16.4 0.0 0.0063 15.9 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family GFRP PF06399.13 gi|284164095|ref|YP_003402374.1| - 0.12 12.2 0.0 17 5.4 0.0 2.4 1 1 1 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) NosL PF05573.12 gi|284164096|ref|YP_003402375.1| - 0.17 12.2 0.1 0.2 12.0 0.1 1.1 1 0 0 1 1 1 0 NosL DUF2304 PF10066.9 gi|284164097|ref|YP_003402376.1| - 1.1 9.5 5.5 0.47 10.7 3.6 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) tRNA-synt_1g PF09334.11 gi|284164098|ref|YP_003402377.1| - 8.4e-146 485.7 0.0 1e-145 485.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|284164098|ref|YP_003402377.1| - 6.8e-21 74.2 0.1 1.1e-20 73.5 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|284164098|ref|YP_003402377.1| - 5.4e-15 54.7 1.4 6e-08 31.4 0.2 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|284164098|ref|YP_003402377.1| - 3.2e-09 36.6 0.0 2.4e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|284164098|ref|YP_003402377.1| - 6.2e-07 29.5 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|284164098|ref|YP_003402377.1| - 0.0012 17.9 0.2 0.58 9.0 0.0 3.0 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|284164098|ref|YP_003402377.1| - 0.046 12.7 0.0 0.097 11.6 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (R) DUF2423 PF10338.9 gi|284164098|ref|YP_003402377.1| - 0.078 13.2 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) HAD_2 PF13419.6 gi|284164099|ref|YP_003402378.1| - 2.4e-20 73.3 0.0 3e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284164099|ref|YP_003402378.1| - 6.5e-15 56.0 0.7 2.9e-13 50.6 0.7 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284164099|ref|YP_003402378.1| - 1.3e-11 44.4 0.1 2.2e-11 43.6 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|284164099|ref|YP_003402378.1| - 2.2e-06 28.2 0.1 2.9e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF4364 PF14277.6 gi|284164100|ref|YP_003402379.1| - 0.071 12.9 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DHQS PF01959.16 gi|284164103|ref|YP_003402382.1| - 3.4e-143 476.8 3.5 4.3e-143 476.5 3.5 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase II TNT PF14021.6 gi|284164103|ref|YP_003402382.1| - 0.0017 18.9 0.0 0.0039 17.7 0.0 1.6 1 0 0 1 1 1 1 Tuberculosis necrotizing toxin Hint PF01079.20 gi|284164103|ref|YP_003402382.1| - 0.0059 16.1 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 Hint module QRPTase_C PF01729.19 gi|284164103|ref|YP_003402382.1| - 0.0086 15.9 0.9 0.096 12.5 0.2 2.4 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Hint_2 PF13403.6 gi|284164103|ref|YP_003402382.1| - 0.028 14.7 0.4 4.4 7.6 0.0 2.7 2 0 0 2 2 2 0 Hint domain DUF4362 PF14275.6 gi|284164103|ref|YP_003402382.1| - 0.14 12.4 1.0 12 6.2 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4362) Complex1_51K PF01512.17 gi|284164104|ref|YP_003402383.1| - 5e-22 78.4 0.0 7.6e-22 77.8 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|284164104|ref|YP_003402383.1| - 9e-06 25.6 0.0 1.8e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|284164104|ref|YP_003402383.1| - 0.00012 21.9 0.6 0.00033 20.5 0.0 2.1 2 0 0 2 2 2 1 SLBB domain RuBisCO_large_N PF02788.16 gi|284164104|ref|YP_003402383.1| - 0.069 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain DZR PF12773.7 gi|284164106|ref|YP_003402385.1| - 8e-05 22.6 1.3 0.00012 22.0 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|284164106|ref|YP_003402385.1| - 0.00046 19.8 0.7 0.00066 19.3 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|284164106|ref|YP_003402385.1| - 0.00059 19.1 0.5 0.00093 18.5 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|284164106|ref|YP_003402385.1| - 0.0017 18.6 1.2 1.4 9.2 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon UPF0547 PF10571.9 gi|284164106|ref|YP_003402385.1| - 0.004 17.2 0.5 0.0072 16.4 0.5 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|284164106|ref|YP_003402385.1| - 0.019 15.7 0.3 0.025 15.3 0.3 1.3 1 1 0 1 1 1 0 zinc-ribbon family YhfH PF14149.6 gi|284164106|ref|YP_003402385.1| - 0.33 11.0 2.4 0.58 10.2 2.4 1.4 1 0 0 1 1 1 0 YhfH-like protein DUF2070 PF09843.9 gi|284164106|ref|YP_003402385.1| - 0.44 8.8 2.7 0.56 8.4 2.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DHquinase_I PF01487.15 gi|284164107|ref|YP_003402386.1| - 1.1e-42 146.9 0.0 1.3e-42 146.6 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase Homoserine_dh PF00742.19 gi|284164108|ref|YP_003402387.1| - 1.4e-48 165.0 0.0 2.3e-48 164.4 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|284164108|ref|YP_003402387.1| - 1.4e-07 31.5 0.2 3.3e-07 30.3 0.1 1.6 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|284164108|ref|YP_003402387.1| - 5.4e-07 30.3 0.1 1.4e-06 28.9 0.1 1.7 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|284164108|ref|YP_003402387.1| - 0.0074 16.9 0.1 0.014 16.0 0.1 1.5 1 0 0 1 1 1 1 PglD N-terminal domain 2-Hacid_dh_C PF02826.19 gi|284164108|ref|YP_003402387.1| - 0.015 14.6 0.1 0.024 14.0 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|284164108|ref|YP_003402387.1| - 0.016 15.7 0.1 0.032 14.7 0.1 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 gi|284164108|ref|YP_003402387.1| - 0.018 15.6 0.2 0.078 13.6 0.1 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|284164108|ref|YP_003402387.1| - 0.027 14.1 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284164108|ref|YP_003402387.1| - 0.03 14.2 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|284164108|ref|YP_003402387.1| - 0.036 14.2 0.2 0.065 13.3 0.2 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|284164108|ref|YP_003402387.1| - 0.054 13.8 0.2 0.25 11.6 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|284164108|ref|YP_003402387.1| - 0.12 13.2 0.0 0.23 12.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ACT PF01842.25 gi|284164109|ref|YP_003402388.1| - 2.7e-05 23.8 2.0 0.0017 18.1 0.0 2.9 2 1 1 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|284164109|ref|YP_003402388.1| - 0.047 14.3 0.0 0.4 11.3 0.0 2.3 3 0 0 3 3 3 0 ACT domain Arg_repressor PF01316.21 gi|284164109|ref|YP_003402388.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain AAA_23 PF13476.6 gi|284164110|ref|YP_003402389.1| - 2.7e-13 50.9 9.3 2.7e-13 50.9 9.3 4.4 1 1 2 3 3 2 1 AAA domain Spc7 PF08317.11 gi|284164110|ref|YP_003402389.1| - 2.7e-06 26.5 71.6 0.0023 16.9 10.9 4.9 3 2 2 5 5 4 4 Spc7 kinetochore protein AAA_13 PF13166.6 gi|284164110|ref|YP_003402389.1| - 9e-06 24.6 41.6 4.6e-05 22.3 16.5 2.9 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.6 gi|284164110|ref|YP_003402389.1| - 1.4e-05 25.0 8.9 8.4e-05 22.4 8.9 2.6 1 1 0 1 1 1 1 AAA ATPase domain DUF4407 PF14362.6 gi|284164110|ref|YP_003402389.1| - 1.6e-05 24.4 51.5 0.018 14.4 16.2 3.8 1 1 3 4 4 4 3 Domain of unknown function (DUF4407) Seryl_tRNA_N PF02403.22 gi|284164110|ref|YP_003402389.1| - 1.8e-05 24.9 58.6 0.046 13.9 2.1 6.0 2 2 3 5 5 5 3 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|284164110|ref|YP_003402389.1| - 1.8e-05 24.7 32.3 1.8e-05 24.7 32.3 5.4 2 2 3 5 5 5 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.11 gi|284164110|ref|YP_003402389.1| - 2.8e-05 24.4 55.1 0.025 15.0 2.6 8.4 6 3 3 9 9 8 4 Flagella accessory protein C (FlaC) MAD PF05557.13 gi|284164110|ref|YP_003402389.1| - 0.00012 20.6 28.3 0.00012 20.6 28.3 2.2 2 0 0 2 2 2 1 Mitotic checkpoint protein Baculo_PEP_C PF04513.12 gi|284164110|ref|YP_003402389.1| - 0.0013 18.8 28.3 0.18 11.8 1.8 4.7 2 2 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus MAP65_ASE1 PF03999.12 gi|284164110|ref|YP_003402389.1| - 0.0014 17.4 17.7 0.0014 17.4 17.7 2.6 2 1 0 2 2 1 1 Microtubule associated protein (MAP65/ASE1 family) GAS PF13851.6 gi|284164110|ref|YP_003402389.1| - 0.0018 17.6 59.0 0.0083 15.5 14.9 4.9 2 2 3 5 5 5 4 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|284164110|ref|YP_003402389.1| - 0.0022 18.0 41.1 0.054 13.5 6.4 6.0 4 2 1 6 6 5 2 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|284164110|ref|YP_003402389.1| - 0.0025 17.9 71.8 0.076 13.1 7.6 5.7 4 1 2 6 6 5 3 TPR/MLP1/MLP2-like protein Atg14 PF10186.9 gi|284164110|ref|YP_003402389.1| - 0.0075 15.4 56.2 0.023 13.8 11.7 4.4 2 2 2 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 ZapB PF06005.12 gi|284164110|ref|YP_003402389.1| - 0.0097 16.3 3.3 0.0097 16.3 3.3 8.3 4 2 2 6 6 6 1 Cell division protein ZapB DHR10 PF18595.1 gi|284164110|ref|YP_003402389.1| - 0.018 15.1 15.0 0.018 15.1 15.0 5.7 3 1 2 5 5 5 0 Designed helical repeat protein 10 domain HIP1_clath_bdg PF16515.5 gi|284164110|ref|YP_003402389.1| - 0.019 15.6 10.7 0.019 15.6 10.7 5.9 2 2 3 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 NPV_P10 PF05531.12 gi|284164110|ref|YP_003402389.1| - 0.037 14.5 39.2 0.38 11.3 1.6 6.4 2 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein HAMP_N3 PF18575.1 gi|284164110|ref|YP_003402389.1| - 0.089 12.4 0.9 5.4 6.7 0.0 3.3 3 0 0 3 3 3 0 HAMP N-terminal domain 3 Phage_GP20 PF06810.11 gi|284164110|ref|YP_003402389.1| - 0.1 12.4 48.0 0.053 13.3 7.4 5.1 2 2 2 4 4 4 0 Phage minor structural protein GP20 SMC_N PF02463.19 gi|284164110|ref|YP_003402389.1| - 0.13 11.7 0.0 0.13 11.7 0.0 2.6 2 1 0 2 2 1 0 RecF/RecN/SMC N terminal domain IFT57 PF10498.9 gi|284164110|ref|YP_003402389.1| - 0.16 10.9 51.7 0.11 11.4 10.8 3.5 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 Fez1 PF06818.15 gi|284164110|ref|YP_003402389.1| - 0.23 11.9 62.3 1.2 9.5 19.9 4.2 1 1 2 4 4 4 0 Fez1 GIT_CC PF16559.5 gi|284164110|ref|YP_003402389.1| - 0.41 10.5 15.5 0.11 12.4 2.1 4.5 5 1 1 6 6 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor BLOC1_2 PF10046.9 gi|284164110|ref|YP_003402389.1| - 0.43 10.9 49.6 0.06 13.7 3.1 6.5 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4201 PF13870.6 gi|284164110|ref|YP_003402389.1| - 0.67 9.7 52.0 4.4 7.0 25.0 4.6 2 2 0 3 3 3 0 Domain of unknown function (DUF4201) TMF_TATA_bd PF12325.8 gi|284164110|ref|YP_003402389.1| - 0.68 10.2 75.6 0.35 11.1 8.6 6.3 2 2 2 5 5 5 0 TATA element modulatory factor 1 TATA binding ERM PF00769.19 gi|284164110|ref|YP_003402389.1| - 0.82 9.4 67.9 0.047 13.5 12.5 3.7 1 1 2 3 3 3 0 Ezrin/radixin/moesin family Golgin_A5 PF09787.9 gi|284164110|ref|YP_003402389.1| - 0.87 9.0 76.9 0.23 10.9 18.1 4.2 1 1 3 4 4 4 0 Golgin subfamily A member 5 KASH_CCD PF14662.6 gi|284164110|ref|YP_003402389.1| - 1.2 8.9 65.7 0.032 14.1 29.2 4.3 3 2 1 4 4 3 0 Coiled-coil region of CCDC155 or KASH Laminin_II PF06009.12 gi|284164110|ref|YP_003402389.1| - 1.2 9.1 38.7 0.4 10.7 5.1 5.3 2 2 4 6 6 6 0 Laminin Domain II DivIC PF04977.15 gi|284164110|ref|YP_003402389.1| - 1.3 8.8 75.1 0.055 13.2 3.5 9.3 3 2 7 10 10 9 0 Septum formation initiator APG6_N PF17675.1 gi|284164110|ref|YP_003402389.1| - 1.3 9.6 93.0 3.4 8.2 13.9 6.0 2 2 2 4 4 4 0 Apg6 coiled-coil region Filament PF00038.21 gi|284164110|ref|YP_003402389.1| - 1.4 8.4 69.7 5.7 6.4 16.3 3.8 2 2 1 3 3 3 0 Intermediate filament protein Prefoldin PF02996.17 gi|284164110|ref|YP_003402389.1| - 2.1 8.3 56.1 3.4 7.6 0.4 8.7 3 3 4 8 8 8 0 Prefoldin subunit FliD_N PF02465.18 gi|284164110|ref|YP_003402389.1| - 2.7 8.8 23.9 4.1 8.2 0.5 5.9 2 2 2 5 5 5 0 Flagellar hook-associated protein 2 N-terminus AIP3 PF03915.13 gi|284164110|ref|YP_003402389.1| - 2.9 6.9 45.3 0.2 10.7 24.9 2.8 1 1 2 3 3 3 0 Actin interacting protein 3 Spectrin PF00435.21 gi|284164110|ref|YP_003402389.1| - 3.2 8.3 52.6 2.7 8.5 6.6 5.9 2 2 3 5 5 5 0 Spectrin repeat DUF1870 PF08965.10 gi|284164110|ref|YP_003402389.1| - 3.4 7.7 5.7 0.89 9.6 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1870) Fib_alpha PF08702.10 gi|284164110|ref|YP_003402389.1| - 4.1 7.6 43.1 0.71 10.0 2.7 4.5 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Occludin_ELL PF07303.13 gi|284164110|ref|YP_003402389.1| - 4.2 8.2 32.5 6.1 7.6 0.7 5.2 2 2 2 4 4 4 0 Occludin homology domain DUF5082 PF16888.5 gi|284164110|ref|YP_003402389.1| - 5.3 7.3 57.8 0.019 15.2 14.6 5.8 2 2 2 4 4 4 0 Domain of unknown function (DUF5082) HemX PF04375.14 gi|284164110|ref|YP_003402389.1| - 6.7 5.9 42.3 1.9 7.7 2.4 4.6 1 1 4 5 5 5 0 HemX, putative uroporphyrinogen-III C-methyltransferase MitMem_reg PF13012.6 gi|284164110|ref|YP_003402389.1| - 7.2 7.1 11.8 87 3.6 0.0 4.2 2 2 1 3 3 3 0 Maintenance of mitochondrial structure and function T3SSipB PF16535.5 gi|284164110|ref|YP_003402389.1| - 8.4 6.9 24.9 14 6.1 3.2 4.5 2 2 1 3 3 3 0 Type III cell invasion protein SipB FAM76 PF16046.5 gi|284164110|ref|YP_003402389.1| - 9.5 5.5 30.2 0.29 10.4 7.8 3.0 2 1 0 2 2 2 0 FAM76 protein Sec8_exocyst PF04048.14 gi|284164110|ref|YP_003402389.1| - 9.7 6.1 20.1 1 9.3 0.6 4.4 3 1 0 3 3 3 0 Sec8 exocyst complex component specific domain HTH_40 PF14493.6 gi|284164111|ref|YP_003402390.1| - 0.16 12.5 0.0 0.44 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF530 PF04409.12 gi|284164111|ref|YP_003402390.1| - 0.18 10.2 0.1 0.47 8.8 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF530) IclR PF01614.18 gi|284164112|ref|YP_003402391.1| - 3.8e-31 107.6 0.0 7e-31 106.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284164112|ref|YP_003402391.1| - 1.6e-10 40.6 0.0 3.1e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284164112|ref|YP_003402391.1| - 5.3e-06 26.4 0.1 1.7e-05 24.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284164112|ref|YP_003402391.1| - 7.2e-06 25.5 0.0 1.7e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284164112|ref|YP_003402391.1| - 1.7e-05 24.6 0.0 3.1e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284164112|ref|YP_003402391.1| - 0.00011 22.0 0.0 0.00035 20.4 0.0 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284164112|ref|YP_003402391.1| - 0.0019 18.1 0.0 0.0055 16.6 0.0 1.8 2 0 0 2 2 2 1 MarR family DUF1803 PF08820.10 gi|284164112|ref|YP_003402391.1| - 0.0069 16.4 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) HTH_11 PF08279.12 gi|284164112|ref|YP_003402391.1| - 0.013 15.4 0.0 0.043 13.8 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.6 gi|284164112|ref|YP_003402391.1| - 0.017 15.3 0.1 0.038 14.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF742 PF05331.11 gi|284164112|ref|YP_003402391.1| - 0.028 14.3 0.0 0.067 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_40 PF14493.6 gi|284164112|ref|YP_003402391.1| - 0.1 13.1 0.0 0.28 11.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain RraA-like PF03737.15 gi|284164113|ref|YP_003402392.1| - 2e-43 148.1 0.5 2.6e-43 147.8 0.5 1.1 1 0 0 1 1 1 1 Aldolase/RraA Lactamase_B_5 PF14597.6 gi|284164115|ref|YP_003402394.1| - 0.027 13.9 0.0 0.03 13.8 0.0 1.0 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily TctC PF03401.14 gi|284164116|ref|YP_003402395.1| - 4.1e-45 154.0 0.0 4.8e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.7 gi|284164116|ref|YP_003402395.1| - 0.00027 20.6 0.1 0.00054 19.6 0.1 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|284164116|ref|YP_003402395.1| - 0.0066 16.2 0.9 0.0066 16.2 0.9 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_3 PF00497.20 gi|284164116|ref|YP_003402395.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Rad33 PF08730.10 gi|284164116|ref|YP_003402395.1| - 0.14 12.2 1.1 0.22 11.5 1.1 1.3 1 0 0 1 1 1 0 Rad33 ADH_N PF08240.12 gi|284164117|ref|YP_003402396.1| - 3.1e-31 107.5 1.4 5.8e-31 106.6 0.5 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284164117|ref|YP_003402396.1| - 4.9e-20 71.8 0.0 7.8e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|284164117|ref|YP_003402396.1| - 1e-10 41.5 0.1 1.5e-10 40.9 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|284164117|ref|YP_003402396.1| - 3.1e-08 34.8 0.1 1.5e-07 32.5 0.0 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase LpxI_N PF17930.1 gi|284164117|ref|YP_003402396.1| - 0.024 14.5 0.2 0.53 10.2 0.1 2.3 2 0 0 2 2 2 0 LpxI N-terminal domain AbiJ_NTD3 PF18860.1 gi|284164117|ref|YP_003402396.1| - 0.16 11.5 0.2 0.25 10.9 0.2 1.2 1 0 0 1 1 1 0 AbiJ N-terminal domain 3 ADH_N_2 PF16884.5 gi|284164117|ref|YP_003402396.1| - 0.16 11.9 0.0 0.41 10.6 0.0 1.6 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase Shikimate_DH PF01488.20 gi|284164117|ref|YP_003402396.1| - 0.2 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lactamase_B PF00753.27 gi|284164118|ref|YP_003402397.1| - 7.5e-15 55.4 7.9 1.1e-14 54.9 7.9 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|284164118|ref|YP_003402397.1| - 6.3e-05 22.6 0.0 8.7e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|284164118|ref|YP_003402397.1| - 0.005 16.3 0.0 0.0077 15.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain TctB PF07331.11 gi|284164119|ref|YP_003402398.1| - 3.2e-20 72.8 12.9 4.1e-20 72.4 12.9 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family TctA PF01970.16 gi|284164120|ref|YP_003402399.1| - 7.4e-136 453.1 41.7 9.5e-136 452.7 41.7 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Acetyltransf_10 PF13673.7 gi|284164121|ref|YP_003402400.1| - 1.7e-13 50.6 0.0 2.5e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284164121|ref|YP_003402400.1| - 2.5e-13 50.3 0.0 3.2e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|284164121|ref|YP_003402400.1| - 3.6e-11 43.9 0.0 4.8e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284164121|ref|YP_003402400.1| - 5.4e-10 39.6 0.0 7.9e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284164121|ref|YP_003402400.1| - 3.4e-06 26.9 0.0 5.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|284164121|ref|YP_003402400.1| - 5.6e-06 26.5 0.0 0.048 13.7 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284164121|ref|YP_003402400.1| - 5.9e-06 26.5 0.0 7.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|284164121|ref|YP_003402400.1| - 0.0027 17.4 0.0 0.0051 16.5 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_18 PF18014.1 gi|284164121|ref|YP_003402400.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284164121|ref|YP_003402400.1| - 0.18 12.0 0.1 0.47 10.6 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Usp PF00582.26 gi|284164122|ref|YP_003402401.1| - 1.7e-13 51.3 0.4 2.1e-13 51.0 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF4607 PF15380.6 gi|284164122|ref|YP_003402401.1| - 0.013 15.0 0.0 0.017 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4607) AvrM-A PF18241.1 gi|284164122|ref|YP_003402401.1| - 0.067 13.6 0.3 0.089 13.2 0.3 1.1 1 0 0 1 1 1 0 Flax-rust effector AvrM-A Epimerase PF01370.21 gi|284164123|ref|YP_003402402.1| - 1.6e-21 76.8 0.0 2.2e-21 76.4 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284164123|ref|YP_003402402.1| - 1.6e-12 47.1 0.0 3.1e-12 46.1 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|284164123|ref|YP_003402402.1| - 2.2e-12 47.1 0.4 1.6e-11 44.2 0.1 2.4 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|284164123|ref|YP_003402402.1| - 7.2e-10 38.5 0.0 1.5e-09 37.4 0.0 1.5 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|284164123|ref|YP_003402402.1| - 9.1e-09 35.5 0.0 1.4e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|284164123|ref|YP_003402402.1| - 4.8e-08 32.5 0.0 1.2e-06 27.9 0.0 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|284164123|ref|YP_003402402.1| - 9.2e-08 31.5 0.0 1.8e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 gi|284164123|ref|YP_003402402.1| - 0.0013 18.6 0.0 0.86 9.5 0.0 2.4 1 1 1 2 2 2 2 KR domain DUF296 PF03479.15 gi|284164124|ref|YP_003402403.1| - 4.8e-19 68.7 0.0 5.7e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain TFIIB PF00382.19 gi|284164125|ref|YP_003402404.1| - 4.1e-39 132.5 0.5 1.1e-19 70.2 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|284164125|ref|YP_003402404.1| - 6.2e-16 57.6 4.5 1.3e-15 56.6 4.5 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|284164125|ref|YP_003402404.1| - 0.0081 15.7 0.0 0.57 9.7 0.0 3.4 3 0 0 3 3 3 1 Sigma-70, region 4 Anti-TRAP PF15777.5 gi|284164125|ref|YP_003402404.1| - 0.025 14.5 0.3 0.047 13.7 0.3 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein A2L_zn_ribbon PF08792.10 gi|284164125|ref|YP_003402404.1| - 0.032 14.0 1.3 0.055 13.2 1.3 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain DUF5419 PF17441.2 gi|284164125|ref|YP_003402404.1| - 0.11 12.6 0.0 5 7.3 0.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5419) OrfB_Zn_ribbon PF07282.11 gi|284164125|ref|YP_003402404.1| - 0.19 11.7 1.5 0.51 10.3 1.5 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|284164125|ref|YP_003402404.1| - 0.25 10.8 1.4 0.64 9.5 0.3 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 NTPase_I-T PF01931.18 gi|284164126|ref|YP_003402405.1| - 1.7e-49 167.7 0.0 2e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 LexA_DNA_bind PF01726.16 gi|284164127|ref|YP_003402406.1| - 0.0016 18.2 0.0 0.0024 17.6 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HAD_2 PF13419.6 gi|284164128|ref|YP_003402407.1| - 8.9e-13 48.7 0.0 1.3e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284164128|ref|YP_003402407.1| - 3.2e-11 43.9 0.2 1.8e-09 38.2 0.2 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284164128|ref|YP_003402407.1| - 2.2e-07 30.8 0.0 5.9e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|284164128|ref|YP_003402407.1| - 0.15 12.2 0.1 0.82 9.8 0.1 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase MarR_2 PF12802.7 gi|284164129|ref|YP_003402408.1| - 5.5e-11 42.2 1.1 2.3e-07 30.6 0.1 3.3 2 1 1 3 3 3 2 MarR family HTH_24 PF13412.6 gi|284164129|ref|YP_003402408.1| - 1.4e-09 37.3 0.0 5.2e-07 29.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|284164129|ref|YP_003402408.1| - 5.1e-09 35.9 0.0 2.8e-05 24.0 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|284164129|ref|YP_003402408.1| - 6.1e-08 32.4 0.0 0.0013 18.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284164129|ref|YP_003402408.1| - 5.5e-07 29.6 1.8 0.0053 16.8 0.0 2.6 2 1 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.6 gi|284164129|ref|YP_003402408.1| - 1.5e-05 25.1 0.0 0.0021 18.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|284164129|ref|YP_003402408.1| - 2.4e-05 24.2 0.1 0.00023 21.1 0.0 2.4 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284164129|ref|YP_003402408.1| - 6.8e-05 23.0 0.0 0.00014 21.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|284164129|ref|YP_003402408.1| - 0.00011 22.0 0.0 0.017 15.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284164129|ref|YP_003402408.1| - 0.0021 17.8 3.7 0.0069 16.2 0.1 3.1 3 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|284164129|ref|YP_003402408.1| - 0.0031 17.4 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|284164129|ref|YP_003402408.1| - 0.0051 16.4 0.0 0.017 14.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|284164129|ref|YP_003402408.1| - 0.0089 15.8 0.3 0.09 12.6 0.0 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|284164129|ref|YP_003402408.1| - 0.043 13.8 0.8 3.9 7.5 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4423 PF14394.6 gi|284164129|ref|YP_003402408.1| - 0.051 13.3 0.0 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|284164129|ref|YP_003402408.1| - 0.1 12.4 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain DUF2250 PF10007.9 gi|284164129|ref|YP_003402408.1| - 0.17 12.0 0.0 5.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Band_7 PF01145.25 gi|284164130|ref|YP_003402409.1| - 6.5e-38 130.5 4.2 6.5e-38 130.5 4.2 2.2 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|284164130|ref|YP_003402409.1| - 0.0012 18.7 0.2 0.0021 17.8 0.2 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|284164131|ref|YP_003402410.1| - 6.8e-07 29.6 0.2 1.3e-06 28.7 0.2 1.6 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding Trypan_PARP PF05887.11 gi|284164132|ref|YP_003402411.1| - 3.9 7.4 8.8 0.8 9.7 5.3 1.6 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) PK PF00224.21 gi|284164133|ref|YP_003402412.1| - 1.5e-116 389.1 4.0 2.1e-116 388.6 4.0 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|284164133|ref|YP_003402412.1| - 6.6e-31 107.0 0.4 1.3e-30 106.1 0.4 1.5 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|284164133|ref|YP_003402412.1| - 2.3e-11 43.3 0.1 1.2e-10 41.0 0.1 2.4 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|284164133|ref|YP_003402412.1| - 0.00089 18.5 1.8 0.0019 17.4 1.2 1.8 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family ADSL_C PF10397.9 gi|284164134|ref|YP_003402413.1| - 0.0016 19.0 2.4 0.0048 17.4 0.5 2.1 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus SprT-like PF10263.9 gi|284164135|ref|YP_003402414.1| - 1.5e-12 47.3 0.0 2.4e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 SprT-like family BSP PF04450.12 gi|284164135|ref|YP_003402414.1| - 0.013 15.3 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase of plants and bacteria Zn-ribbon_8 PF09723.10 gi|284164135|ref|YP_003402414.1| - 0.04 14.0 0.3 0.92 9.7 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF2887 PF11103.8 gi|284164136|ref|YP_003402415.1| - 0.22 11.5 0.1 0.35 10.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2887) NUP PF06516.11 gi|284164138|ref|YP_003402417.1| - 1.8e-53 181.8 0.0 2.2e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Purine nucleoside permease (NUP) PNP_UDP_1 PF01048.20 gi|284164138|ref|YP_003402417.1| - 8.4e-16 57.9 0.4 1.3e-15 57.3 0.4 1.2 1 0 0 1 1 1 1 Phosphorylase superfamily Gamma_PGA_hydro PF05908.11 gi|284164140|ref|YP_003402419.1| - 1.5e-15 57.1 0.0 2e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase Nramp PF01566.18 gi|284164141|ref|YP_003402420.1| - 1.1e-33 116.7 29.4 2e-33 115.9 29.4 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein COX14 PF14880.6 gi|284164141|ref|YP_003402420.1| - 0.6 10.0 9.7 0.43 10.5 0.5 3.7 3 0 0 3 3 3 0 Cytochrome oxidase c assembly DUF4212 PF13937.6 gi|284164141|ref|YP_003402420.1| - 0.7 10.3 0.1 0.7 10.3 0.1 3.4 5 1 0 5 5 5 0 Domain of unknown function (DUF4212) DeoC PF01791.9 gi|284164142|ref|YP_003402421.1| - 1.7e-46 158.7 0.2 2.1e-46 158.5 0.2 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|284164142|ref|YP_003402421.1| - 0.00049 19.6 0.0 0.00082 18.9 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.24 gi|284164142|ref|YP_003402421.1| - 0.021 14.4 0.2 0.081 12.5 0.2 2.0 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.12 gi|284164142|ref|YP_003402421.1| - 0.17 11.1 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Trp_syntA PF00290.20 gi|284164143|ref|YP_003402422.1| - 9.4e-88 293.4 0.1 1.1e-87 293.2 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PucR PF07905.11 gi|284164143|ref|YP_003402422.1| - 0.00095 19.4 0.0 0.0091 16.3 0.0 2.2 1 1 0 2 2 2 1 Purine catabolism regulatory protein-like family His_biosynth PF00977.21 gi|284164143|ref|YP_003402422.1| - 0.0025 17.3 0.0 0.0058 16.1 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|284164143|ref|YP_003402422.1| - 0.022 14.2 0.1 0.15 11.5 0.1 1.9 2 0 0 2 2 2 0 PcrB family ThiG PF05690.14 gi|284164143|ref|YP_003402422.1| - 0.038 13.3 0.8 0.063 12.6 0.8 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.25 gi|284164144|ref|YP_003402423.1| - 2e-37 129.2 0.8 3.4e-37 128.4 0.8 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|284164145|ref|YP_003402424.1| - 4.8e-73 245.5 0.0 5.4e-73 245.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.18 gi|284164145|ref|YP_003402424.1| - 6.3e-07 28.7 1.1 1.6e-06 27.4 1.1 1.8 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|284164145|ref|YP_003402424.1| - 2.4e-05 23.9 0.0 0.00057 19.4 0.0 2.4 2 1 0 2 2 2 1 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|284164145|ref|YP_003402424.1| - 6.5e-05 22.8 0.3 0.00022 21.0 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|284164145|ref|YP_003402424.1| - 0.00024 20.4 0.1 0.0024 17.1 0.1 2.3 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase Trp_syntA PF00290.20 gi|284164145|ref|YP_003402424.1| - 0.011 14.6 0.1 0.03 13.2 0.0 1.7 2 1 0 2 2 2 0 Tryptophan synthase alpha chain ThiG PF05690.14 gi|284164145|ref|YP_003402424.1| - 0.018 14.4 0.7 0.22 10.8 0.5 2.3 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|284164145|ref|YP_003402424.1| - 0.035 13.3 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|284164145|ref|YP_003402424.1| - 0.052 12.5 0.2 0.35 9.8 0.0 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DNA_binding_1 PF01035.20 gi|284164146|ref|YP_003402425.1| - 2.3e-07 30.8 0.0 3.7e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain AAA_25 PF13481.6 gi|284164146|ref|YP_003402425.1| - 0.013 15.0 0.3 0.018 14.6 0.3 1.2 1 0 0 1 1 1 0 AAA domain DUF2206 PF09971.9 gi|284164147|ref|YP_003402426.1| - 0.0097 14.7 4.4 0.012 14.4 4.4 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2206) 7TMR-DISM_7TM PF07695.11 gi|284164147|ref|YP_003402426.1| - 0.1 12.5 10.2 0.13 12.1 10.2 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Oxidored_q6 PF01058.22 gi|284164147|ref|YP_003402426.1| - 0.18 11.6 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 NADH ubiquinone oxidoreductase, 20 Kd subunit CPP1-like PF11833.8 gi|284164147|ref|YP_003402426.1| - 0.21 11.2 6.8 0.4 10.3 6.8 1.4 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF1772 PF08592.11 gi|284164147|ref|YP_003402426.1| - 1 9.6 7.0 1.5 9.1 6.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) SirB PF04247.12 gi|284164147|ref|YP_003402426.1| - 2.4 8.3 7.9 0.47 10.6 4.1 1.8 1 1 1 2 2 2 0 Invasion gene expression up-regulator, SirB Polysacc_synt_C PF14667.6 gi|284164147|ref|YP_003402426.1| - 4.7 7.3 17.6 33 4.5 17.6 1.9 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain CPBP PF02517.16 gi|284164148|ref|YP_003402427.1| - 3e-12 46.7 11.0 3e-12 46.7 11.0 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Lon_C PF05362.13 gi|284164149|ref|YP_003402428.1| - 7e-35 120.4 4.4 1.1e-34 119.8 4.4 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|284164149|ref|YP_003402428.1| - 8e-30 104.1 0.0 7.6e-23 81.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|284164149|ref|YP_003402428.1| - 2.9e-17 62.8 0.1 4.8e-10 39.2 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|284164149|ref|YP_003402428.1| - 4.1e-15 55.9 0.0 6.7e-09 35.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|284164149|ref|YP_003402428.1| - 3.1e-10 40.2 0.0 0.0012 18.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|284164149|ref|YP_003402428.1| - 4.1e-10 39.6 0.6 8.8e-10 38.5 0.6 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.29 gi|284164149|ref|YP_003402428.1| - 1.7e-06 28.5 0.0 0.037 14.4 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|284164149|ref|YP_003402428.1| - 2e-06 27.6 0.1 0.0018 18.0 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|284164149|ref|YP_003402428.1| - 8.4e-06 25.0 0.1 0.093 11.8 0.0 2.3 2 0 0 2 2 2 2 MCM P-loop domain TIP49 PF06068.13 gi|284164149|ref|YP_003402428.1| - 6.8e-05 22.2 0.1 0.017 14.4 0.1 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_3 PF07726.11 gi|284164149|ref|YP_003402428.1| - 0.00011 22.1 0.1 0.18 11.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|284164149|ref|YP_003402428.1| - 0.00014 22.3 0.0 0.43 10.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.6 gi|284164149|ref|YP_003402428.1| - 0.00014 22.0 0.0 0.19 11.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|284164149|ref|YP_003402428.1| - 0.00039 20.0 0.0 0.0012 18.4 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|284164149|ref|YP_003402428.1| - 0.00047 20.5 0.0 0.0053 17.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|284164149|ref|YP_003402428.1| - 0.0015 18.3 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|284164149|ref|YP_003402428.1| - 0.011 15.2 0.0 0.025 14.0 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein DUF815 PF05673.13 gi|284164149|ref|YP_003402428.1| - 0.014 14.6 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_PrkA PF08298.11 gi|284164149|ref|YP_003402428.1| - 0.015 14.2 0.0 0.38 9.6 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain AAA_33 PF13671.6 gi|284164149|ref|YP_003402428.1| - 0.018 15.2 0.0 0.049 13.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|284164149|ref|YP_003402428.1| - 0.03 14.1 0.0 0.067 12.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|284164149|ref|YP_003402428.1| - 0.035 14.6 0.0 0.11 13.0 0.0 1.8 2 0 0 2 2 1 0 ABC transporter AAA_2 PF07724.14 gi|284164149|ref|YP_003402428.1| - 0.036 14.2 0.0 6.3 6.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|284164149|ref|YP_003402428.1| - 0.041 13.8 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF1189 PF06691.11 gi|284164149|ref|YP_003402428.1| - 0.046 13.3 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) AAA_10 PF12846.7 gi|284164149|ref|YP_003402428.1| - 0.068 12.1 0.1 0.17 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|284164149|ref|YP_003402428.1| - 0.069 12.1 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MCM_lid PF17855.1 gi|284164149|ref|YP_003402428.1| - 0.094 13.2 0.3 0.32 11.4 0.0 2.0 2 0 0 2 2 1 0 MCM AAA-lid domain CTP_transf_like PF01467.26 gi|284164150|ref|YP_003402429.1| - 1.8e-15 57.4 0.1 6.1e-15 55.7 0.1 1.8 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|284164150|ref|YP_003402429.1| - 0.0041 16.8 0.0 0.0097 15.6 0.0 1.6 1 1 1 2 2 2 1 Citrate lyase ligase C-terminal domain HIGH_NTase1 PF05636.11 gi|284164150|ref|YP_003402429.1| - 0.1 11.8 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase SAM_adeno_trans PF01887.16 gi|284164151|ref|YP_003402430.1| - 9.5e-74 247.8 0.0 1.2e-73 247.5 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase HalOD1 PF18545.1 gi|284164152|ref|YP_003402431.1| - 3.8e-25 87.9 1.9 5.2e-25 87.5 1.9 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Tim44 PF04280.15 gi|284164152|ref|YP_003402431.1| - 0.051 13.7 0.1 0.23 11.5 0.1 1.9 1 1 0 1 1 1 0 Tim44-like domain Cpn60_TCP1 PF00118.24 gi|284164153|ref|YP_003402432.1| - 9.1e-144 479.7 13.4 1e-143 479.5 13.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family bMG3 PF11974.8 gi|284164153|ref|YP_003402432.1| - 0.11 12.5 2.1 25 5.0 0.1 3.5 3 0 0 3 3 3 0 Bacterial alpha-2-macroglobulin MG3 domain Amidohydro_2 PF04909.14 gi|284164154|ref|YP_003402433.1| - 1.1e-10 41.7 0.8 1.7e-10 41.1 0.8 1.3 1 1 0 1 1 1 1 Amidohydrolase Xylo_C PF12529.8 gi|284164154|ref|YP_003402433.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Xylosyltransferase C terminal Anti-TRAP PF15777.5 gi|284164155|ref|YP_003402434.1| - 0.044 13.8 0.9 0.052 13.5 0.9 1.1 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein OrfB_Zn_ribbon PF07282.11 gi|284164155|ref|YP_003402434.1| - 0.054 13.4 0.6 0.063 13.2 0.6 1.0 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|284164155|ref|YP_003402434.1| - 0.19 11.8 0.6 0.2 11.7 0.6 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Pilin_N PF07790.11 gi|284164156|ref|YP_003402435.1| - 1.8 9.6 7.7 2 9.4 7.7 1.2 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal PAC2 PF09754.9 gi|284164157|ref|YP_003402436.1| - 5.3e-52 176.9 0.2 6.4e-52 176.7 0.2 1.1 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|284164158|ref|YP_003402437.1| - 3e-24 84.8 1.1 3.3e-24 84.7 1.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family EIF_2_alpha PF07541.12 gi|284164159|ref|YP_003402438.1| - 8.7e-24 83.8 0.0 1.6e-23 83.0 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|284164159|ref|YP_003402438.1| - 2.6e-11 43.7 1.1 5.5e-11 42.7 1.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain DUF2073 PF09846.9 gi|284164159|ref|YP_003402438.1| - 0.014 15.3 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) cwf21 PF08312.12 gi|284164159|ref|YP_003402438.1| - 0.027 14.6 2.1 0.056 13.6 0.3 2.5 2 0 0 2 2 2 0 cwf21 domain Ribosomal_S27e PF01667.17 gi|284164160|ref|YP_003402439.1| - 3.7e-21 74.6 0.7 4e-21 74.5 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|284164160|ref|YP_003402439.1| - 0.0002 21.4 0.8 0.00029 20.9 0.8 1.2 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|284164160|ref|YP_003402439.1| - 0.018 15.0 0.8 0.022 14.8 0.8 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|284164160|ref|YP_003402439.1| - 0.35 10.8 2.9 5.7 6.9 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|284164160|ref|YP_003402439.1| - 0.53 10.8 3.0 14 6.3 2.9 2.2 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Ribosomal_L44 PF00935.19 gi|284164161|ref|YP_003402440.1| - 1.2e-25 89.8 2.7 1.4e-25 89.5 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|284164161|ref|YP_003402440.1| - 1.4e-05 24.3 0.6 0.019 14.4 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284164161|ref|YP_003402440.1| - 0.01 16.0 1.8 2.4 8.3 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Terminase_GpA PF05876.12 gi|284164161|ref|YP_003402440.1| - 0.016 13.8 1.5 0.024 13.2 1.5 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) Zn_Tnp_IS1595 PF12760.7 gi|284164161|ref|YP_003402440.1| - 0.022 14.7 2.4 3.2 7.8 0.3 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|284164161|ref|YP_003402440.1| - 0.024 14.4 1.6 0.84 9.4 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_2 PF13240.6 gi|284164161|ref|YP_003402440.1| - 0.067 12.9 4.1 2.3 8.1 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|284164161|ref|YP_003402440.1| - 0.1 12.8 2.8 0.99 9.7 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DZR PF12773.7 gi|284164161|ref|YP_003402440.1| - 0.16 12.0 3.3 0.48 10.5 3.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|284164161|ref|YP_003402440.1| - 0.33 11.1 7.1 0.62 10.2 7.1 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_4 PF13717.6 gi|284164161|ref|YP_003402440.1| - 0.34 10.9 2.5 14 5.7 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|284164161|ref|YP_003402440.1| - 0.42 10.6 10.1 0.59 10.1 0.4 2.6 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|284164161|ref|YP_003402440.1| - 0.86 9.4 7.0 0.68 9.7 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain COX1 PF00115.20 gi|284164162|ref|YP_003402441.1| - 2e-60 204.9 41.0 2e-60 204.9 41.0 2.0 2 0 0 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I GtrA PF04138.14 gi|284164164|ref|YP_003402443.1| - 9.9e-22 77.4 10.5 1.2e-21 77.1 10.5 1.1 1 0 0 1 1 1 1 GtrA-like protein SBP_bac_5 PF00496.22 gi|284164165|ref|YP_003402444.1| - 3.7e-52 177.5 0.0 1.1e-45 156.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4404 PF14357.6 gi|284164165|ref|YP_003402444.1| - 0.074 13.7 0.0 0.17 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) PAP2_3 PF14378.6 gi|284164166|ref|YP_003402445.1| - 4.1e-18 65.7 13.1 9.1e-18 64.6 13.1 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|284164166|ref|YP_003402445.1| - 6.9e-13 48.5 3.0 6.9e-13 48.5 3.0 2.1 2 1 0 2 2 2 1 PAP2 superfamily DUF5368 PF17336.2 gi|284164166|ref|YP_003402445.1| - 0.0068 16.6 0.2 0.0068 16.6 0.2 2.4 3 0 0 3 3 3 1 Family of unknown function (DUF5368) DUF2070 PF09843.9 gi|284164166|ref|YP_003402445.1| - 1.3 7.2 18.4 22 3.2 18.4 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|284164168|ref|YP_003402447.1| - 3.4e-33 115.0 0.0 4.9e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284164168|ref|YP_003402447.1| - 4.3e-15 56.0 0.0 9.2e-15 54.9 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|284164168|ref|YP_003402447.1| - 4.2e-06 27.2 1.0 2.8e-05 24.6 0.1 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284164168|ref|YP_003402447.1| - 0.00078 19.7 0.2 0.0091 16.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284164168|ref|YP_003402447.1| - 0.0044 16.5 0.0 0.0095 15.4 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|284164168|ref|YP_003402447.1| - 0.0052 16.6 0.1 0.78 9.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_5 PF07728.14 gi|284164168|ref|YP_003402447.1| - 0.0062 16.5 0.1 0.02 14.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|284164168|ref|YP_003402447.1| - 0.0078 16.1 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|284164168|ref|YP_003402447.1| - 0.086 12.9 0.0 0.18 11.9 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|284164168|ref|YP_003402447.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|284164168|ref|YP_003402447.1| - 0.16 11.6 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|284164168|ref|YP_003402447.1| - 0.16 12.4 0.0 0.34 11.3 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|284164169|ref|YP_003402448.1| - 8.1e-26 91.2 0.0 1.1e-25 90.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284164169|ref|YP_003402448.1| - 8.5e-20 71.0 0.3 1.9e-19 69.9 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284164169|ref|YP_003402448.1| - 0.00032 20.6 0.4 0.014 15.3 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284164169|ref|YP_003402448.1| - 0.18 12.1 0.2 0.51 10.6 0.2 1.9 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|284164170|ref|YP_003402449.1| - 5.4e-38 130.6 5.7 5.4e-38 130.6 5.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|284164170|ref|YP_003402449.1| - 1.6e-11 44.0 0.1 1.6e-11 44.0 0.1 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|284164171|ref|YP_003402450.1| - 2.9e-44 151.0 9.0 4.4e-44 150.4 9.0 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|284164172|ref|YP_003402451.1| - 6.8e-58 196.4 0.0 3.4e-53 181.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Pribosyltran PF00156.27 gi|284164173|ref|YP_003402452.1| - 6.2e-16 58.3 3.8 8.4e-16 57.9 3.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|284164173|ref|YP_003402452.1| - 2.3e-05 24.0 0.2 3e-05 23.6 0.2 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|284164173|ref|YP_003402452.1| - 0.099 12.1 0.2 0.15 11.6 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Reticulon PF02453.17 gi|284164174|ref|YP_003402453.1| - 0.024 14.6 0.1 0.031 14.2 0.1 1.1 1 0 0 1 1 1 0 Reticulon CRISPR_Cse2 PF09485.10 gi|284164174|ref|YP_003402453.1| - 0.15 12.6 0.5 1.3 9.6 0.1 2.1 2 0 0 2 2 2 0 CRISPR-associated protein Cse2 (CRISPR_cse2) DFP PF04127.15 gi|284164175|ref|YP_003402454.1| - 7e-49 166.2 1.8 6.4e-48 163.0 0.3 2.4 2 1 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|284164175|ref|YP_003402454.1| - 1.3e-34 119.2 0.4 2e-34 118.7 0.4 1.3 1 0 0 1 1 1 1 Flavoprotein PALP PF00291.25 gi|284164175|ref|YP_003402454.1| - 0.012 15.0 4.6 0.16 11.4 0.5 2.6 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme MoCF_biosynth PF00994.24 gi|284164176|ref|YP_003402455.1| - 1.9e-32 111.9 0.0 5e-32 110.5 0.0 1.7 2 1 1 3 3 3 1 Probable molybdopterin binding domain IucA_IucC PF04183.12 gi|284164177|ref|YP_003402456.1| - 1e-55 188.9 0.0 1.5e-55 188.3 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|284164177|ref|YP_003402456.1| - 1.7e-26 93.6 0.4 3.7e-26 92.5 0.4 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Pyr_redox_2 PF07992.14 gi|284164178|ref|YP_003402457.1| - 4.6e-13 49.0 2.2 2e-06 27.2 0.1 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284164178|ref|YP_003402457.1| - 7.7e-07 28.5 4.6 3.8e-05 22.9 2.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|284164178|ref|YP_003402457.1| - 0.00011 22.4 0.2 0.00024 21.2 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|284164178|ref|YP_003402457.1| - 0.00052 19.7 11.0 0.052 13.1 3.5 2.8 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|284164178|ref|YP_003402457.1| - 0.00057 19.3 2.3 0.00057 19.3 2.3 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|284164178|ref|YP_003402457.1| - 0.0013 17.9 0.2 0.002 17.3 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|284164178|ref|YP_003402457.1| - 0.0017 17.7 0.2 0.0073 15.6 0.2 1.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284164178|ref|YP_003402457.1| - 0.0019 16.9 0.0 0.0072 15.1 0.4 1.7 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|284164178|ref|YP_003402457.1| - 0.0026 16.9 0.6 0.019 14.0 0.4 2.1 2 1 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|284164178|ref|YP_003402457.1| - 0.0048 16.2 0.9 0.0085 15.4 0.9 1.3 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|284164178|ref|YP_003402457.1| - 0.13 11.6 0.1 0.22 10.8 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|284164178|ref|YP_003402457.1| - 0.25 10.5 0.8 0.5 9.6 0.4 1.6 2 0 0 2 2 2 0 Thi4 family Peptidase_M48 PF01435.18 gi|284164179|ref|YP_003402458.1| - 6.6e-22 78.2 0.0 1.3e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M43 PF05572.13 gi|284164179|ref|YP_003402458.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF2268 PF10026.9 gi|284164179|ref|YP_003402458.1| - 0.21 11.2 0.0 0.32 10.5 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) VMA21 PF09446.10 gi|284164179|ref|YP_003402458.1| - 9.6 6.4 12.6 7.1 6.8 0.0 3.4 3 0 0 3 3 3 0 VMA21-like domain Polyketide_cyc2 PF10604.9 gi|284164180|ref|YP_003402459.1| - 8.1e-11 42.4 0.7 1.2e-10 41.8 0.7 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|284164180|ref|YP_003402459.1| - 1.4e-06 28.6 0.2 2.3e-06 27.8 0.2 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MFS_1 PF07690.16 gi|284164181|ref|YP_003402460.1| - 5.3e-33 114.4 51.9 8.4e-31 107.2 43.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.21 gi|284164181|ref|YP_003402460.1| - 4.2e-05 22.6 3.9 0.029 13.2 0.1 2.4 2 0 0 2 2 2 2 POT family Na_sulph_symp PF00939.19 gi|284164182|ref|YP_003402461.1| - 3.7e-82 276.9 32.4 4.8e-82 276.5 32.4 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|284164182|ref|YP_003402461.1| - 1.4e-33 116.4 52.9 1e-17 64.3 23.3 3.4 2 2 1 3 3 3 3 Citrate transporter HTH_19 PF12844.7 gi|284164183|ref|YP_003402462.1| - 0.0099 15.9 0.2 0.014 15.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2059 PF09832.9 gi|284164183|ref|YP_003402462.1| - 0.032 14.3 0.2 0.21 11.7 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2059) HTH_31 PF13560.6 gi|284164183|ref|YP_003402462.1| - 0.067 13.5 2.0 0.095 13.1 2.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_M42 PF05343.14 gi|284164184|ref|YP_003402463.1| - 1.2e-89 300.2 0.1 1.4e-89 300.0 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|284164184|ref|YP_003402463.1| - 5.6e-09 36.0 0.1 9.2e-09 35.3 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|284164184|ref|YP_003402463.1| - 6.3e-09 35.8 0.1 0.00011 21.9 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M18 PF02127.15 gi|284164184|ref|YP_003402463.1| - 0.0024 16.7 0.0 1.5 7.5 0.0 2.3 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) OB_RNB PF08206.11 gi|284164184|ref|YP_003402463.1| - 0.015 15.0 0.2 0.19 11.5 0.0 2.5 2 0 0 2 2 2 0 Ribonuclease B OB domain Thiolase_N PF00108.23 gi|284164185|ref|YP_003402464.1| - 3.4e-23 82.3 0.4 3.8e-22 78.9 0.4 2.2 1 1 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|284164185|ref|YP_003402464.1| - 1.6e-11 44.3 2.9 6.8e-10 39.0 0.8 3.1 3 1 1 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|284164185|ref|YP_003402464.1| - 6.6e-09 35.5 0.1 1.5e-08 34.3 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|284164185|ref|YP_003402464.1| - 0.046 13.6 0.5 5 7.1 0.0 2.6 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|284164186|ref|YP_003402465.1| - 2e-11 43.7 0.9 2.9e-11 43.2 0.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|284164186|ref|YP_003402465.1| - 6.2e-05 22.8 0.7 0.00011 22.0 0.7 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.7 gi|284164187|ref|YP_003402466.1| - 3e-27 96.7 4.3 3.9e-27 96.3 4.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284164187|ref|YP_003402466.1| - 2e-12 47.3 0.0 1.2e-10 41.4 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284164187|ref|YP_003402466.1| - 7.3e-08 32.0 0.0 1e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|284164187|ref|YP_003402466.1| - 0.076 13.1 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain MeaB PF03308.16 gi|284164188|ref|YP_003402467.1| - 5.7e-91 304.2 4.6 7.3e-91 303.8 4.6 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|284164188|ref|YP_003402467.1| - 2.6e-07 30.4 1.1 2.1e-06 27.4 1.1 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.27 gi|284164188|ref|YP_003402467.1| - 2.6e-06 27.1 0.1 0.0064 16.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain SRP54 PF00448.22 gi|284164188|ref|YP_003402467.1| - 2.2e-05 24.2 0.5 7.9e-05 22.4 0.5 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|284164188|ref|YP_003402467.1| - 2.9e-05 24.0 0.0 8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|284164188|ref|YP_003402467.1| - 8.5e-05 22.3 0.0 0.00022 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|284164188|ref|YP_003402467.1| - 9.8e-05 22.3 0.1 0.0003 20.8 0.1 1.8 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.6 gi|284164188|ref|YP_003402467.1| - 0.00053 20.5 0.3 0.01 16.4 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284164188|ref|YP_003402467.1| - 0.0006 20.2 1.6 0.0028 18.0 0.1 2.5 2 2 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|284164188|ref|YP_003402467.1| - 0.00078 20.0 0.1 0.0014 19.1 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|284164188|ref|YP_003402467.1| - 0.0011 19.2 0.0 0.0028 17.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284164188|ref|YP_003402467.1| - 0.0037 17.0 0.1 0.0079 15.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.14 gi|284164188|ref|YP_003402467.1| - 0.0051 16.7 0.1 0.017 15.0 0.1 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|284164188|ref|YP_003402467.1| - 0.0058 16.5 0.0 0.072 13.0 0.0 2.5 3 0 0 3 3 3 1 RsgA GTPase Zeta_toxin PF06414.12 gi|284164188|ref|YP_003402467.1| - 0.0076 15.5 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MMR_HSR1 PF01926.23 gi|284164188|ref|YP_003402467.1| - 0.015 15.3 0.1 0.043 13.9 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|284164188|ref|YP_003402467.1| - 0.016 15.5 0.1 0.016 15.5 0.1 2.2 2 1 1 3 3 2 0 AAA domain KTI12 PF08433.10 gi|284164188|ref|YP_003402467.1| - 0.022 14.2 0.0 0.059 12.8 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 KAP_NTPase PF07693.14 gi|284164188|ref|YP_003402467.1| - 0.022 14.0 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain PRK PF00485.18 gi|284164188|ref|YP_003402467.1| - 0.024 14.4 0.0 0.063 13.0 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TrwB_AAD_bind PF10412.9 gi|284164188|ref|YP_003402467.1| - 0.028 13.4 0.0 0.053 12.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|284164188|ref|YP_003402467.1| - 0.028 14.5 0.0 0.04 14.0 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|284164188|ref|YP_003402467.1| - 0.028 14.8 0.1 0.084 13.3 0.1 1.8 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|284164188|ref|YP_003402467.1| - 0.034 13.7 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Ploopntkinase3 PF18751.1 gi|284164188|ref|YP_003402467.1| - 0.044 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 NACHT PF05729.12 gi|284164188|ref|YP_003402467.1| - 0.051 13.5 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain ParA PF10609.9 gi|284164188|ref|YP_003402467.1| - 0.061 12.8 1.8 0.83 9.0 0.1 2.2 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA_33 PF13671.6 gi|284164188|ref|YP_003402467.1| - 0.066 13.4 0.0 0.18 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|284164188|ref|YP_003402467.1| - 0.074 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|284164188|ref|YP_003402467.1| - 0.099 12.2 1.3 0.42 10.1 0.0 2.6 2 1 1 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|284164188|ref|YP_003402467.1| - 0.14 12.5 0.3 0.38 11.1 0.1 1.8 1 1 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|284164188|ref|YP_003402467.1| - 0.18 11.5 0.0 0.39 10.4 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Imm5 PF14423.6 gi|284164188|ref|YP_003402467.1| - 0.38 11.0 2.4 5.4 7.2 2.4 2.3 1 1 0 1 1 1 0 Immunity protein Imm5 B12-binding PF02310.19 gi|284164189|ref|YP_003402468.1| - 5.6e-24 84.5 0.9 6.3e-24 84.3 0.9 1.0 1 0 0 1 1 1 1 B12 binding domain BcrAD_BadFG PF01869.20 gi|284164189|ref|YP_003402468.1| - 0.015 14.8 0.0 0.026 14.0 0.0 1.4 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family IMPDH PF00478.25 gi|284164189|ref|YP_003402468.1| - 0.016 14.2 0.0 0.019 14.0 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Staph_haemo PF05480.11 gi|284164189|ref|YP_003402468.1| - 0.078 12.8 0.1 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Staphylococcus haemolytic protein HD PF01966.22 gi|284164190|ref|YP_003402469.1| - 2.1e-17 63.5 4.4 3.7e-17 62.7 4.4 1.3 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.11 gi|284164190|ref|YP_003402469.1| - 0.0019 17.2 0.2 0.074 12.0 0.1 2.1 2 0 0 2 2 2 2 Putative helicase HD_4 PF13328.6 gi|284164190|ref|YP_003402469.1| - 0.022 14.5 0.3 0.045 13.5 0.3 1.4 1 0 0 1 1 1 0 HD domain LysE PF01810.18 gi|284164192|ref|YP_003402471.1| - 2e-21 76.3 11.0 6.4e-19 68.2 11.0 2.1 1 1 0 1 1 1 1 LysE type translocator DUF1134 PF06577.12 gi|284164192|ref|YP_003402471.1| - 0.044 13.6 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1134) TMEM237 PF15383.6 gi|284164192|ref|YP_003402471.1| - 0.48 9.5 2.1 8.3 5.4 0.4 2.4 2 0 0 2 2 2 0 Transmembrane protein 237 Methyltransf_3 PF01596.17 gi|284164193|ref|YP_003402472.1| - 6.8e-23 81.0 0.0 8.4e-23 80.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|284164193|ref|YP_003402472.1| - 9.4e-16 58.8 0.1 1.7e-15 58.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164193|ref|YP_003402472.1| - 1.8e-07 31.1 0.0 2.7e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164193|ref|YP_003402472.1| - 4.5e-07 30.5 0.0 7.2e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284164193|ref|YP_003402472.1| - 1.5e-05 24.7 0.0 2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|284164193|ref|YP_003402472.1| - 0.00013 21.8 0.0 0.00018 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|284164193|ref|YP_003402472.1| - 0.00072 20.3 0.0 0.0013 19.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164193|ref|YP_003402472.1| - 0.021 14.2 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family DUF4112 PF13430.6 gi|284164194|ref|YP_003402473.1| - 0.098 12.9 1.0 0.94 9.8 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4112) PAS_4 PF08448.10 gi|284164195|ref|YP_003402474.1| - 2.8e-63 211.0 40.6 1.4e-14 54.3 0.1 7.6 7 1 0 7 7 7 6 PAS fold PAS PF00989.25 gi|284164195|ref|YP_003402474.1| - 7e-49 164.5 3.3 2.5e-12 46.8 0.1 7.0 6 2 0 6 6 6 6 PAS fold PAS_9 PF13426.7 gi|284164195|ref|YP_003402474.1| - 2.1e-47 159.7 0.0 3.1e-11 43.4 0.0 6.7 6 0 0 6 6 6 5 PAS domain PAS_8 PF13188.7 gi|284164195|ref|YP_003402474.1| - 9.9e-34 114.8 8.8 6.2e-08 32.5 0.0 6.9 6 0 0 6 6 6 6 PAS domain HATPase_c PF02518.26 gi|284164195|ref|YP_003402474.1| - 6e-28 97.6 0.0 1.6e-27 96.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|284164195|ref|YP_003402474.1| - 9e-17 61.3 1.0 5.1e-05 23.4 0.0 7.1 6 2 0 6 6 6 2 PAS fold GAF_2 PF13185.6 gi|284164195|ref|YP_003402474.1| - 1.3e-15 57.9 0.6 1.3e-15 57.9 0.6 5.0 6 1 0 6 6 6 1 GAF domain PAS_3 PF08447.12 gi|284164195|ref|YP_003402474.1| - 6.2e-13 48.8 0.1 0.058 13.7 0.0 7.5 7 1 0 7 7 7 3 PAS fold HisKA PF00512.25 gi|284164195|ref|YP_003402474.1| - 5.9e-09 35.8 0.1 2.5e-08 33.8 0.1 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|284164195|ref|YP_003402474.1| - 2.3e-07 31.2 0.0 8.7e-07 29.3 0.0 2.1 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|284164195|ref|YP_003402474.1| - 6.3e-05 22.9 0.2 0.00027 20.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|284164195|ref|YP_003402474.1| - 0.00025 20.9 0.0 0.00054 19.8 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_2 PF08446.11 gi|284164195|ref|YP_003402474.1| - 0.0055 17.4 0.0 18 6.1 0.0 4.5 4 0 0 4 4 4 0 PAS fold CCB2_CCB4 PF11152.8 gi|284164195|ref|YP_003402474.1| - 0.042 13.1 0.0 0.093 12.0 0.0 1.5 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 HATPase_c_3 PF13589.6 gi|284164195|ref|YP_003402474.1| - 0.088 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ZapB PF06005.12 gi|284164195|ref|YP_003402474.1| - 0.17 12.4 6.4 2.9 8.4 0.3 3.9 3 0 0 3 3 3 0 Cell division protein ZapB TM_helix PF05552.12 gi|284164198|ref|YP_003402477.1| - 6e-21 74.2 5.0 1.4e-13 50.6 0.6 2.9 2 0 0 2 2 2 2 Conserved TM helix Bacillus_PapR PF05968.11 gi|284164198|ref|YP_003402477.1| - 0.27 11.2 0.8 0.6 10.0 0.8 1.5 1 0 0 1 1 1 0 Bacillus PapR protein Creatininase PF02633.14 gi|284164199|ref|YP_003402478.1| - 6.4e-67 225.5 0.4 7.3e-67 225.3 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase NikR_C PF08753.11 gi|284164200|ref|YP_003402479.1| - 2.8e-21 75.5 1.8 4.4e-21 74.8 1.8 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|284164200|ref|YP_003402479.1| - 2.9e-07 30.2 0.0 5e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|284164200|ref|YP_003402479.1| - 0.0015 18.3 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicB_lk_antitox PF15919.5 gi|284164200|ref|YP_003402479.1| - 0.023 14.8 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Cupin_2 PF07883.11 gi|284164201|ref|YP_003402480.1| - 1.1e-11 44.2 0.1 1.5e-11 43.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284164201|ref|YP_003402480.1| - 0.00038 20.4 0.0 0.00047 20.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain EutQ PF06249.12 gi|284164201|ref|YP_003402480.1| - 0.0017 18.1 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_3 PF05899.12 gi|284164201|ref|YP_003402480.1| - 0.0032 17.1 0.0 0.0056 16.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|284164201|ref|YP_003402480.1| - 0.006 16.3 0.0 0.0096 15.7 0.0 1.3 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|284164201|ref|YP_003402480.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.6 gi|284164201|ref|YP_003402480.1| - 0.015 15.0 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain PAAR_motif PF05488.13 gi|284164201|ref|YP_003402480.1| - 0.16 12.2 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 PAAR motif DUF4382 PF14321.6 gi|284164203|ref|YP_003402482.1| - 7.2e-15 55.4 11.5 9.3e-15 55.1 5.2 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4382) TAT_signal PF10518.9 gi|284164203|ref|YP_003402482.1| - 0.001 18.8 0.6 0.0017 18.1 0.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CDC45 PF02724.14 gi|284164203|ref|YP_003402482.1| - 4.5 5.4 22.1 0.23 9.7 8.2 2.2 2 0 0 2 2 2 0 CDC45-like protein Acyl-CoA_dh_1 PF00441.24 gi|284164204|ref|YP_003402483.1| - 1.8e-41 141.9 1.2 3.1e-41 141.1 0.6 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284164204|ref|YP_003402483.1| - 9.1e-26 89.9 0.0 1.9e-25 88.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|284164204|ref|YP_003402483.1| - 2.3e-23 83.0 0.5 4.7e-23 82.0 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284164204|ref|YP_003402483.1| - 1.9e-17 63.8 0.5 3.8e-17 62.8 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Mor PF08765.11 gi|284164204|ref|YP_003402483.1| - 0.06 13.3 0.1 2.1 8.4 0.0 2.5 2 0 0 2 2 2 0 Mor transcription activator family HalX PF08663.10 gi|284164205|ref|YP_003402484.1| - 1.3e-25 89.5 4.5 2.9e-25 88.4 4.5 1.7 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|284164205|ref|YP_003402484.1| - 7.7e-21 74.4 0.3 1.2e-20 73.8 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Ribonuc_red_lgN PF00317.21 gi|284164205|ref|YP_003402484.1| - 1.1 9.3 2.7 29 4.8 0.0 2.3 1 1 1 2 2 2 0 Ribonucleotide reductase, all-alpha domain 3HCDH_N PF02737.18 gi|284164206|ref|YP_003402485.1| - 1.6e-67 226.9 0.4 2.7e-67 226.1 0.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|284164206|ref|YP_003402485.1| - 5.8e-61 206.0 0.0 1.3e-60 204.8 0.0 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|284164206|ref|YP_003402485.1| - 7.8e-51 170.7 0.8 2.8e-33 114.4 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|284164206|ref|YP_003402485.1| - 1.2e-34 120.4 0.2 6e-31 108.2 0.0 2.9 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|284164206|ref|YP_003402485.1| - 1e-07 32.1 0.0 1.8e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|284164206|ref|YP_003402485.1| - 1.1e-05 25.6 0.7 4.2e-05 23.8 0.7 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|284164206|ref|YP_003402485.1| - 0.00028 21.4 1.5 0.0019 18.8 1.5 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DLH PF01738.18 gi|284164206|ref|YP_003402485.1| - 0.083 12.4 1.0 4.8 6.7 0.1 2.3 2 0 0 2 2 2 0 Dienelactone hydrolase family DUF3645 PF12359.8 gi|284164206|ref|YP_003402485.1| - 0.1 12.0 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) 2-Hacid_dh_C PF02826.19 gi|284164206|ref|YP_003402485.1| - 0.1 12.0 1.5 1.4 8.3 0.2 2.8 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mur_ligase PF01225.25 gi|284164206|ref|YP_003402485.1| - 0.16 12.3 0.1 0.47 10.8 0.1 1.7 1 0 0 1 1 1 0 Mur ligase family, catalytic domain IlvN PF07991.12 gi|284164206|ref|YP_003402485.1| - 0.83 9.2 4.5 23 4.5 4.5 2.3 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Acyl-CoA_dh_1 PF00441.24 gi|284164207|ref|YP_003402486.1| - 1.4e-51 174.6 1.0 2.3e-51 174.0 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284164207|ref|YP_003402486.1| - 9.4e-34 116.5 0.2 2e-33 115.4 0.2 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284164207|ref|YP_003402486.1| - 9.9e-30 103.5 0.6 1.4e-29 103.0 0.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284164207|ref|YP_003402486.1| - 2e-24 85.6 0.0 3.7e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain YopD PF05844.12 gi|284164207|ref|YP_003402486.1| - 0.042 12.9 0.1 0.067 12.2 0.1 1.3 1 0 0 1 1 1 0 YopD protein HTH_10 PF04967.12 gi|284164209|ref|YP_003402488.1| - 1.8e-18 66.0 0.1 3.6e-18 65.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|284164209|ref|YP_003402488.1| - 0.00022 20.9 0.1 0.00052 19.8 0.1 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 gi|284164209|ref|YP_003402488.1| - 0.0016 18.0 0.1 0.0032 17.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284164209|ref|YP_003402488.1| - 0.0031 17.4 0.1 0.01 15.7 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_psq PF05225.16 gi|284164209|ref|YP_003402488.1| - 0.0086 15.8 0.7 0.045 13.5 0.0 2.2 2 0 0 2 2 2 1 helix-turn-helix, Psq domain Phage_CI_repr PF07022.13 gi|284164209|ref|YP_003402488.1| - 0.029 14.4 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|284164209|ref|YP_003402488.1| - 0.035 13.8 0.2 4.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|284164209|ref|YP_003402488.1| - 0.043 13.9 0.0 0.14 12.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|284164209|ref|YP_003402488.1| - 0.063 13.1 1.6 0.093 12.5 0.2 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_1 PF00126.27 gi|284164209|ref|YP_003402488.1| - 0.088 12.8 0.1 0.27 11.2 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|284164209|ref|YP_003402488.1| - 0.11 12.0 0.6 0.35 10.4 0.6 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|284164209|ref|YP_003402488.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family E1-E2_ATPase PF00122.20 gi|284164210|ref|YP_003402489.1| - 3.7e-55 186.3 0.7 6.7e-55 185.4 0.7 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|284164210|ref|YP_003402489.1| - 1.1e-39 136.9 6.4 2.9e-39 135.5 6.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|284164210|ref|YP_003402489.1| - 1.3e-26 92.9 5.1 2.9e-13 50.0 0.0 4.2 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.7 gi|284164210|ref|YP_003402489.1| - 1.7e-06 28.6 0.5 3.9e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|284164210|ref|YP_003402489.1| - 4.8e-06 26.5 3.1 0.018 14.8 1.6 2.6 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|284164210|ref|YP_003402489.1| - 0.11 12.6 0.0 0.7 10.0 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Phage_head_chap PF11113.8 gi|284164211|ref|YP_003402490.1| - 0.059 13.5 0.0 0.066 13.3 0.0 1.1 1 0 0 1 1 1 0 Head assembly gene product FAD_binding_2 PF00890.24 gi|284164212|ref|YP_003402491.1| - 1.4e-93 314.3 6.6 1.9e-93 313.8 6.6 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|284164212|ref|YP_003402491.1| - 9.9e-20 70.8 0.0 2.1e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|284164212|ref|YP_003402491.1| - 2e-06 27.6 5.5 1.4e-05 24.8 5.5 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284164212|ref|YP_003402491.1| - 7.9e-06 25.3 0.2 0.00088 18.6 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284164212|ref|YP_003402491.1| - 3.2e-05 22.8 0.4 0.22 10.2 0.5 3.0 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|284164212|ref|YP_003402491.1| - 0.00071 18.9 0.4 0.0052 16.1 0.3 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|284164212|ref|YP_003402491.1| - 0.0013 18.0 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|284164212|ref|YP_003402491.1| - 0.0069 15.6 0.7 2.5 7.3 0.1 2.2 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.6 gi|284164212|ref|YP_003402491.1| - 0.031 14.5 2.2 0.16 12.2 1.4 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|284164212|ref|YP_003402491.1| - 0.04 13.5 0.1 0.083 12.5 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|284164212|ref|YP_003402491.1| - 0.059 12.4 0.2 0.18 10.9 0.5 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|284164212|ref|YP_003402491.1| - 0.062 12.3 1.0 0.52 9.3 0.4 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|284164212|ref|YP_003402491.1| - 0.11 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.21 gi|284164212|ref|YP_003402491.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.20 gi|284164212|ref|YP_003402491.1| - 0.2 11.7 0.0 0.4 10.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HhH-GPD PF00730.25 gi|284164213|ref|YP_003402492.1| - 4.2e-15 56.1 0.0 5.6e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein YcxB PF14317.6 gi|284164214|ref|YP_003402493.1| - 0.044 13.5 0.2 0.13 11.9 0.2 1.8 1 0 0 1 1 1 0 YcxB-like protein PRC PF05239.16 gi|284164214|ref|YP_003402493.1| - 0.14 12.2 0.1 0.14 12.2 0.1 3.4 3 0 0 3 3 3 0 PRC-barrel domain peroxidase PF00141.23 gi|284164215|ref|YP_003402494.1| - 3.2e-88 295.3 0.0 4.7e-48 163.9 0.0 2.2 2 0 0 2 2 2 2 Peroxidase STI1 PF17830.1 gi|284164215|ref|YP_003402494.1| - 0.015 15.2 0.1 0.044 13.7 0.0 1.8 2 0 0 2 2 2 0 STI1 domain RimK PF08443.11 gi|284164216|ref|YP_003402495.1| - 1.2e-22 80.4 0.0 2.2e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|284164216|ref|YP_003402495.1| - 1.4e-09 38.0 0.4 1.2e-07 31.6 0.0 2.3 1 1 1 2 2 2 1 Putative ATP-dependant zinc protease ATP-grasp_3 PF02655.14 gi|284164216|ref|YP_003402495.1| - 1.8e-07 31.3 0.0 7e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|284164216|ref|YP_003402495.1| - 2.2e-07 30.5 0.0 3.8e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain R2K_3 PF14243.6 gi|284164216|ref|YP_003402495.1| - 0.00022 21.3 0.6 0.00049 20.2 0.6 1.5 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|284164216|ref|YP_003402495.1| - 0.00035 21.1 0.2 0.001 19.6 0.2 1.8 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|284164216|ref|YP_003402495.1| - 0.00069 20.2 2.6 0.0016 19.1 0.8 2.4 2 0 0 2 2 2 1 Aspartyl protease DUF5488 PF17590.2 gi|284164216|ref|YP_003402495.1| - 0.015 15.0 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5488) Polysacc_synt PF01943.17 gi|284164217|ref|YP_003402496.1| - 4.8e-28 98.3 15.2 4.8e-28 98.3 15.2 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|284164217|ref|YP_003402496.1| - 9.2e-22 77.6 4.1 9.2e-22 77.6 4.1 2.3 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|284164217|ref|YP_003402496.1| - 2.5e-20 73.0 20.9 2.5e-20 73.0 20.9 4.1 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|284164217|ref|YP_003402496.1| - 2.6e-07 30.4 4.8 2.6e-07 30.4 4.8 3.8 3 2 0 3 3 3 2 MatE MurJ PF03023.14 gi|284164217|ref|YP_003402496.1| - 5.1e-06 25.4 23.0 8.4e-05 21.4 23.0 2.3 1 1 0 1 1 1 1 Lipid II flippase MurJ Phage_holin_2_4 PF16082.5 gi|284164217|ref|YP_003402496.1| - 2.9 7.7 7.8 7.9 6.3 1.9 3.1 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Acetyltransf_1 PF00583.25 gi|284164219|ref|YP_003402498.1| - 6.3e-10 39.3 0.0 9.8e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284164219|ref|YP_003402498.1| - 5.4e-08 33.1 0.2 1.4e-07 31.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284164219|ref|YP_003402498.1| - 1.3e-07 31.5 0.0 2.1e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284164219|ref|YP_003402498.1| - 9e-05 22.6 0.1 0.00026 21.1 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain AstA PF04958.12 gi|284164219|ref|YP_003402498.1| - 0.0037 15.9 0.2 0.022 13.3 0.0 2.2 1 1 3 4 4 4 1 Arginine N-succinyltransferase beta subunit FR47 PF08445.10 gi|284164219|ref|YP_003402498.1| - 0.01 15.8 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.7 gi|284164219|ref|YP_003402498.1| - 0.015 15.4 0.0 0.021 14.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|284164219|ref|YP_003402498.1| - 0.017 15.3 2.4 0.067 13.3 0.5 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284164219|ref|YP_003402498.1| - 0.032 14.9 0.0 0.053 14.2 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AstE_AspA PF04952.14 gi|284164220|ref|YP_003402499.1| - 8.2e-64 215.5 0.0 1e-63 215.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF354 PF04007.12 gi|284164220|ref|YP_003402499.1| - 0.16 11.0 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Sdh_cyt PF01127.22 gi|284164221|ref|YP_003402500.1| - 1.1e-25 90.0 4.1 1.3e-25 89.8 4.1 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|284164222|ref|YP_003402501.1| - 3.8e-11 43.1 5.7 4.9e-11 42.7 5.7 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CCB2_CCB4 PF11152.8 gi|284164222|ref|YP_003402501.1| - 0.011 15.1 0.2 0.015 14.6 0.1 1.3 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 Fer2_3 PF13085.6 gi|284164223|ref|YP_003402502.1| - 6.3e-34 116.3 0.9 1.3e-33 115.2 0.0 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|284164223|ref|YP_003402502.1| - 2.5e-13 50.3 3.0 5.1e-13 49.3 3.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284164223|ref|YP_003402502.1| - 5.3e-08 32.8 3.5 1.3e-07 31.6 3.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284164223|ref|YP_003402502.1| - 1.8e-06 28.4 1.4 4.3e-06 27.2 0.4 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284164223|ref|YP_003402502.1| - 2.2e-05 24.9 3.1 5.5e-05 23.6 3.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284164223|ref|YP_003402502.1| - 0.00069 19.7 6.3 0.00069 19.7 6.3 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284164223|ref|YP_003402502.1| - 0.0089 16.9 7.9 0.071 14.0 7.1 2.6 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|284164223|ref|YP_003402502.1| - 0.015 15.0 6.6 0.63 9.8 0.5 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|284164223|ref|YP_003402502.1| - 0.033 14.3 2.8 0.2 11.8 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284164223|ref|YP_003402502.1| - 0.17 12.1 5.5 6.6 7.0 1.0 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284164223|ref|YP_003402502.1| - 0.22 12.3 1.7 19 6.0 0.1 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|284164223|ref|YP_003402502.1| - 0.34 11.5 8.7 0.65 10.6 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|284164223|ref|YP_003402502.1| - 0.97 9.4 9.5 3.1 7.8 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284164223|ref|YP_003402502.1| - 2.1 8.5 7.6 3.7 7.8 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|284164223|ref|YP_003402502.1| - 3.7 8.7 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|284164224|ref|YP_003402503.1| - 1.9e-120 402.8 7.6 1.9e-120 402.8 7.6 1.6 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|284164224|ref|YP_003402503.1| - 2.3e-38 131.1 0.3 3.8e-38 130.4 0.3 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|284164224|ref|YP_003402503.1| - 2e-09 37.1 6.1 0.00073 18.9 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284164224|ref|YP_003402503.1| - 5.1e-05 22.1 0.8 0.00011 21.1 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein DAO PF01266.24 gi|284164224|ref|YP_003402503.1| - 0.0018 17.9 8.5 0.0077 15.9 7.1 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|284164224|ref|YP_003402503.1| - 0.0023 17.1 4.0 0.0048 16.0 4.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|284164224|ref|YP_003402503.1| - 0.0025 17.2 3.8 0.0025 17.2 3.8 1.9 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|284164224|ref|YP_003402503.1| - 0.0029 16.9 1.1 0.01 15.1 0.4 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284164224|ref|YP_003402503.1| - 0.0038 16.5 2.6 0.037 13.3 0.6 2.6 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|284164224|ref|YP_003402503.1| - 0.0042 16.4 1.2 0.0098 15.2 1.2 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|284164224|ref|YP_003402503.1| - 0.039 14.5 1.0 0.12 12.9 1.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284164224|ref|YP_003402503.1| - 0.06 12.6 1.2 0.13 11.6 1.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TcpE PF12648.7 gi|284164225|ref|YP_003402504.1| - 0.049 14.2 0.3 0.052 14.1 0.3 1.0 1 0 0 1 1 1 0 TcpE family DUF1427 PF07235.11 gi|284164226|ref|YP_003402505.1| - 2.9e-06 27.1 2.2 3.4e-06 26.9 2.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) TrmB PF01978.19 gi|284164227|ref|YP_003402506.1| - 0.0029 17.4 0.0 0.0033 17.3 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284164227|ref|YP_003402506.1| - 0.034 14.0 0.1 0.042 13.8 0.1 1.1 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|284164227|ref|YP_003402506.1| - 0.07 13.1 0.1 0.27 11.2 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HD PF01966.22 gi|284164228|ref|YP_003402507.1| - 4.5e-09 36.6 2.2 8.5e-09 35.7 2.2 1.4 1 0 0 1 1 1 1 HD domain AhpC-TSA PF00578.21 gi|284164229|ref|YP_003402508.1| - 8.1e-33 113.0 0.0 9.4e-33 112.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284164229|ref|YP_003402508.1| - 8.4e-22 77.5 0.0 9.9e-22 77.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|284164229|ref|YP_003402508.1| - 7.5e-05 22.3 0.0 9.9e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) MttA_Hcf106 PF02416.16 gi|284164230|ref|YP_003402509.1| - 2.5e-14 52.3 5.7 7.2e-14 50.9 5.7 1.8 1 1 0 1 1 1 1 mttA/Hcf106 family Acyl-CoA_dh_1 PF00441.24 gi|284164232|ref|YP_003402511.1| - 5.8e-37 127.2 0.8 1.1e-36 126.3 0.8 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284164232|ref|YP_003402511.1| - 1.4e-19 70.1 0.1 2.1e-18 66.3 0.1 2.3 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284164232|ref|YP_003402511.1| - 8.9e-13 48.7 0.5 8.9e-13 48.7 0.5 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284164232|ref|YP_003402511.1| - 1.5e-11 45.0 0.8 3.6e-11 43.7 0.8 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 gi|284164232|ref|YP_003402511.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal adh_short_C2 PF13561.6 gi|284164233|ref|YP_003402512.1| - 3.2e-66 223.2 0.9 4e-66 222.9 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284164233|ref|YP_003402512.1| - 1.9e-54 184.1 0.1 2.7e-54 183.6 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284164233|ref|YP_003402512.1| - 1.6e-15 57.4 0.3 2.2e-15 57.0 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284164233|ref|YP_003402512.1| - 0.0027 17.2 0.5 0.0041 16.6 0.5 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|284164233|ref|YP_003402512.1| - 0.0047 16.8 4.8 0.0074 16.2 4.1 1.8 2 0 0 2 2 2 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 gi|284164233|ref|YP_003402512.1| - 0.018 14.4 1.2 0.027 13.8 1.2 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.17 gi|284164233|ref|YP_003402512.1| - 0.12 11.4 1.5 0.17 10.9 1.5 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain T2SSE PF00437.20 gi|284164234|ref|YP_003402513.1| - 1.8e-42 145.3 0.0 2.9e-42 144.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|284164234|ref|YP_003402513.1| - 0.011 15.5 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|284164235|ref|YP_003402514.1| - 1.5e-28 99.3 14.4 3.1e-16 59.4 0.5 3.4 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Claudin_2 PF13903.6 gi|284164235|ref|YP_003402514.1| - 0.034 13.9 0.3 1.3 8.7 0.1 3.1 3 0 0 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction T7SS_ESX_EspC PF10824.8 gi|284164235|ref|YP_003402514.1| - 0.078 13.5 0.1 0.21 12.1 0.1 1.8 1 0 0 1 1 1 0 Excreted virulence factor EspC, type VII ESX diderm SelK_SelG PF10961.8 gi|284164235|ref|YP_003402514.1| - 0.33 11.6 0.1 0.33 11.6 0.1 2.0 2 0 0 2 2 2 0 Selenoprotein SelK_SelG Orf78 PF06024.12 gi|284164235|ref|YP_003402514.1| - 0.49 10.7 2.0 2.1 8.7 0.2 2.5 2 0 0 2 2 2 0 Orf78 (ac78) Nramp PF01566.18 gi|284164237|ref|YP_003402516.1| - 0.026 13.5 0.0 0.037 13.0 0.0 1.1 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein Bact_lectin PF18483.1 gi|284164237|ref|YP_003402516.1| - 0.034 14.2 0.8 0.042 13.8 0.8 1.2 1 0 0 1 1 1 0 Bacterial lectin SAPS PF04499.15 gi|284164241|ref|YP_003402520.1| - 4.8 5.9 5.3 5.8 5.6 5.3 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein CDC45 PF02724.14 gi|284164241|ref|YP_003402520.1| - 7.7 4.7 9.9 10 4.2 9.9 1.1 1 0 0 1 1 1 0 CDC45-like protein CheR PF01739.18 gi|284164242|ref|YP_003402521.1| - 1.8e-44 151.6 0.0 2.4e-44 151.2 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|284164242|ref|YP_003402521.1| - 3.7e-12 45.8 4.9 3.9e-12 45.7 0.3 2.8 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|284164242|ref|YP_003402521.1| - 5.2e-07 30.3 0.0 9.5e-05 23.1 0.0 2.4 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164242|ref|YP_003402521.1| - 1.2e-06 29.2 0.0 0.0026 18.4 0.0 2.7 2 1 1 3 3 3 2 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164242|ref|YP_003402521.1| - 3.7e-05 23.5 0.0 0.0019 18.0 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164242|ref|YP_003402521.1| - 0.00024 21.0 0.0 0.00038 20.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164242|ref|YP_003402521.1| - 0.00073 20.1 0.0 0.016 15.9 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain DUF3369 PF11849.8 gi|284164242|ref|YP_003402521.1| - 0.035 14.3 0.0 0.064 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3369) TehB PF03848.14 gi|284164242|ref|YP_003402521.1| - 0.062 12.7 0.0 0.5 9.7 0.0 2.0 1 1 1 2 2 2 0 Tellurite resistance protein TehB NodS PF05401.11 gi|284164242|ref|YP_003402521.1| - 0.068 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) CheD PF03975.13 gi|284164243|ref|YP_003402522.1| - 2e-32 111.5 0.0 2.5e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|284164244|ref|YP_003402523.1| - 3.8e-21 74.7 0.5 5.3e-13 48.6 0.1 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|284164244|ref|YP_003402523.1| - 1.3e-14 54.1 1.5 8.6e-08 32.3 0.1 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheC PF04509.12 gi|284164245|ref|YP_003402524.1| - 2.3e-12 46.6 0.1 6.1e-12 45.2 0.0 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|284164245|ref|YP_003402524.1| - 1.4e-06 28.4 0.0 2.7e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Hpt PF01627.23 gi|284164246|ref|YP_003402525.1| - 2e-23 82.4 6.7 5.7e-22 77.8 0.3 3.4 3 0 0 3 3 3 2 Hpt domain HATPase_c PF02518.26 gi|284164246|ref|YP_003402525.1| - 4.5e-18 65.8 0.0 1.1e-17 64.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|284164246|ref|YP_003402525.1| - 7.7e-11 41.8 0.2 1.6e-10 40.8 0.2 1.6 1 0 0 1 1 1 1 CheW-like domain H-kinase_dim PF02895.14 gi|284164246|ref|YP_003402525.1| - 1.9e-09 37.8 3.4 8.2e-09 35.7 3.4 2.2 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|284164246|ref|YP_003402525.1| - 2.1e-05 24.5 0.6 9.2e-05 22.4 0.6 2.2 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain P2 PF07194.11 gi|284164246|ref|YP_003402525.1| - 0.00014 21.8 0.0 0.001 19.1 0.0 2.6 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_3 PF13589.6 gi|284164246|ref|YP_003402525.1| - 0.0019 18.1 0.1 0.0044 16.9 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CorA PF01544.18 gi|284164246|ref|YP_003402525.1| - 8.3 5.6 6.5 20 4.4 2.3 2.8 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein CheB_methylest PF01339.17 gi|284164247|ref|YP_003402526.1| - 3.3e-55 186.4 0.1 9.4e-55 184.9 0.0 1.8 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|284164247|ref|YP_003402526.1| - 1.7e-23 82.9 0.1 4.8e-23 81.5 0.1 1.7 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|284164248|ref|YP_003402527.1| - 3.1e-31 107.9 0.2 3.4e-31 107.7 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 gi|284164248|ref|YP_003402527.1| - 0.0061 16.6 0.0 0.0088 16.1 0.0 1.3 1 0 0 1 1 1 1 B12 binding domain PA PF02225.22 gi|284164248|ref|YP_003402527.1| - 0.12 12.4 0.2 0.21 11.6 0.2 1.7 1 1 0 1 1 1 0 PA domain CheW PF01584.19 gi|284164249|ref|YP_003402528.1| - 2.1e-19 69.5 0.3 5.1e-19 68.3 0.2 1.6 2 0 0 2 2 2 1 CheW-like domain CheW PF01584.19 gi|284164250|ref|YP_003402529.1| - 7e-14 51.6 0.0 9.6e-14 51.2 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain DUF1727 PF08353.10 gi|284164250|ref|YP_003402529.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1727) DUF2110 PF09883.9 gi|284164252|ref|YP_003402531.1| - 5.9e-95 317.1 0.0 6.7e-95 316.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) bMG5 PF17972.1 gi|284164252|ref|YP_003402531.1| - 0.011 16.2 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG5 domain TFIIE_alpha PF02002.17 gi|284164253|ref|YP_003402532.1| - 8.8e-19 67.3 0.0 1.8e-18 66.3 0.1 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|284164253|ref|YP_003402532.1| - 0.0031 17.6 0.1 0.0097 16.0 0.1 1.8 1 0 0 1 1 1 1 Sigma-70 region 3 Rad50_zn_hook PF04423.14 gi|284164253|ref|YP_003402532.1| - 0.0068 16.2 0.3 0.053 13.4 0.0 2.3 2 0 0 2 2 2 1 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|284164253|ref|YP_003402532.1| - 0.011 15.7 0.2 0.023 14.7 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain HTH_20 PF12840.7 gi|284164253|ref|YP_003402532.1| - 0.021 14.9 0.3 0.2 11.7 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|284164253|ref|YP_003402532.1| - 0.048 13.8 1.8 0.093 12.9 1.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284164253|ref|YP_003402532.1| - 0.053 13.0 0.1 0.098 12.1 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|284164253|ref|YP_003402532.1| - 0.081 12.9 0.2 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|284164253|ref|YP_003402532.1| - 0.12 12.0 0.9 7.3 6.3 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|284164253|ref|YP_003402532.1| - 0.12 12.4 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|284164253|ref|YP_003402532.1| - 0.24 11.5 2.3 0.93 9.6 1.5 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Oxidored_q4 PF00507.19 gi|284164254|ref|YP_003402533.1| - 0.034 14.3 0.9 0.039 14.1 0.9 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CoA_binding_3 PF13727.6 gi|284164254|ref|YP_003402533.1| - 0.11 12.5 2.2 0.13 12.3 2.2 1.0 1 0 0 1 1 1 0 CoA-binding domain DUF443 PF04276.12 gi|284164254|ref|YP_003402533.1| - 1.7 8.4 6.6 2 8.2 6.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF443) AMP-binding PF00501.28 gi|284164255|ref|YP_003402534.1| - 6.3e-106 354.5 0.1 7.3e-106 354.3 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164255|ref|YP_003402534.1| - 3.3e-21 76.0 0.4 7.9e-21 74.8 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Trm56 PF01994.16 gi|284164257|ref|YP_003402536.1| - 6e-48 161.7 0.0 7.8e-48 161.3 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 HATPase_c PF02518.26 gi|284164258|ref|YP_003402537.1| - 6.5e-30 103.9 0.0 2e-29 102.4 0.0 1.8 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|284164258|ref|YP_003402537.1| - 4.5e-13 50.0 0.7 2.4e-12 47.6 0.1 2.4 3 0 0 3 3 2 1 GAF domain PAS_9 PF13426.7 gi|284164258|ref|YP_003402537.1| - 8.1e-12 45.3 0.0 2.3e-11 43.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 gi|284164258|ref|YP_003402537.1| - 1.3e-11 45.0 0.2 9.7e-11 42.1 0.0 2.3 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|284164258|ref|YP_003402537.1| - 1.4e-11 44.9 3.2 3e-11 43.8 0.1 2.9 3 0 0 3 3 3 1 GAF domain HisKA PF00512.25 gi|284164258|ref|YP_003402537.1| - 7.1e-10 38.8 0.1 7.1e-10 38.8 0.1 3.9 3 1 1 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284164258|ref|YP_003402537.1| - 3.6e-09 36.8 0.1 1.2e-08 35.2 0.1 1.9 1 0 0 1 1 1 1 PAS fold HisKA_4TM PF16926.5 gi|284164258|ref|YP_003402537.1| - 2.1e-07 30.7 0.4 4.5e-07 29.6 0.4 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS PF00989.25 gi|284164258|ref|YP_003402537.1| - 5.1e-07 29.7 0.0 1.7e-06 28.0 0.0 2.0 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|284164258|ref|YP_003402537.1| - 1.2e-05 25.6 0.0 0.0011 19.2 0.0 2.8 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|284164258|ref|YP_003402537.1| - 0.00032 20.6 0.0 0.001 18.9 0.0 1.8 2 0 0 2 2 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284164258|ref|YP_003402537.1| - 0.0011 18.9 0.1 0.0036 17.3 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|284164258|ref|YP_003402537.1| - 0.0024 17.7 0.0 0.0055 16.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1707 PF08044.11 gi|284164258|ref|YP_003402537.1| - 0.0097 16.0 5.1 0.043 13.9 0.4 3.8 2 1 0 2 2 2 1 Domain of unknown function (DUF1707) DUF327 PF03885.13 gi|284164258|ref|YP_003402537.1| - 0.019 14.9 3.4 1.5 8.7 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF327) PAS_8 PF13188.7 gi|284164258|ref|YP_003402537.1| - 0.023 14.7 0.1 0.091 12.8 0.1 2.1 1 0 0 1 1 1 0 PAS domain SLATT_5 PF18160.1 gi|284164258|ref|YP_003402537.1| - 0.041 13.2 0.1 0.1 11.9 0.0 1.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 Syntaxin-6_N PF09177.11 gi|284164258|ref|YP_003402537.1| - 0.042 14.4 0.7 0.042 14.4 0.7 2.9 3 0 0 3 3 3 0 Syntaxin 6, N-terminal OmpH PF03938.14 gi|284164258|ref|YP_003402537.1| - 0.11 12.8 8.2 3.7 7.9 0.7 3.3 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) LOH1CR12 PF10158.9 gi|284164258|ref|YP_003402537.1| - 0.16 12.0 0.7 0.93 9.5 0.1 2.2 2 0 0 2 2 2 0 Tumour suppressor protein DUF5082 PF16888.5 gi|284164258|ref|YP_003402537.1| - 0.42 10.9 7.2 2.9 8.2 2.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) DUF981 PF06168.11 gi|284164258|ref|YP_003402537.1| - 0.44 10.4 4.0 0.7 9.8 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF981) Streptin-Immun PF11083.8 gi|284164258|ref|YP_003402537.1| - 0.58 10.6 4.7 5.6 7.4 0.2 2.6 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein DUF4200 PF13863.6 gi|284164258|ref|YP_003402537.1| - 0.75 10.2 12.1 0.24 11.8 1.8 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) CASP_C PF08172.12 gi|284164258|ref|YP_003402537.1| - 1.1 8.6 7.7 0.25 10.6 3.4 1.9 2 0 0 2 2 2 0 CASP C terminal bZIP_1 PF00170.21 gi|284164258|ref|YP_003402537.1| - 1.5 8.9 16.2 0.62 10.2 3.9 2.9 3 0 0 3 3 2 0 bZIP transcription factor HAUS-augmin3 PF14932.6 gi|284164258|ref|YP_003402537.1| - 1.9 8.0 8.5 0.68 9.5 2.4 2.5 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 UPF0242 PF06785.11 gi|284164258|ref|YP_003402537.1| - 2.1 8.4 10.4 5.5 7.0 1.0 2.8 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus Exonuc_VII_S PF02609.16 gi|284164258|ref|YP_003402537.1| - 2.3 8.4 6.8 7.8 6.7 0.5 2.7 2 0 0 2 2 2 0 Exonuclease VII small subunit PGBA_C PF15437.6 gi|284164258|ref|YP_003402537.1| - 2.6 8.5 11.7 0.68 10.3 2.5 2.4 2 0 0 2 2 2 0 Plasminogen-binding protein pgbA C-terminal Tektin PF03148.14 gi|284164258|ref|YP_003402537.1| - 2.6 6.7 17.9 0.031 13.0 2.3 2.5 3 0 0 3 3 2 0 Tektin family CcdA PF07362.12 gi|284164258|ref|YP_003402537.1| - 3.5 8.1 6.6 0.55 10.7 0.7 2.6 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA Cupin_2 PF07883.11 gi|284164259|ref|YP_003402538.1| - 1.7e-16 59.6 0.0 2.7e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|284164259|ref|YP_003402538.1| - 0.00045 19.9 0.0 0.0014 18.3 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|284164259|ref|YP_003402538.1| - 0.005 16.7 0.0 0.0074 16.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|284164259|ref|YP_003402538.1| - 0.024 14.2 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 Cupin ArgoL1 PF08699.10 gi|284164260|ref|YP_003402539.1| - 0.012 15.3 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 Argonaute linker 1 domain Usp PF00582.26 gi|284164261|ref|YP_003402540.1| - 3.9e-38 131.1 1.6 4.4e-38 131.0 1.6 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|284164261|ref|YP_003402540.1| - 0.00048 20.1 1.1 0.2 11.6 0.9 2.1 1 1 1 2 2 2 2 Electron transfer flavoprotein domain CBS PF00571.28 gi|284164261|ref|YP_003402540.1| - 0.081 13.4 0.7 1.9 9.0 0.0 2.3 2 0 0 2 2 2 0 CBS domain FMN_red PF03358.15 gi|284164261|ref|YP_003402540.1| - 0.15 11.8 0.4 0.97 9.2 0.1 1.9 2 0 0 2 2 2 0 NADPH-dependent FMN reductase SSF PF00474.17 gi|284164262|ref|YP_003402541.1| - 1.2e-51 175.9 29.3 1.7e-51 175.4 29.3 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.6 gi|284164263|ref|YP_003402542.1| - 1e-20 73.9 0.1 1.3e-20 73.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) AMP-binding PF00501.28 gi|284164264|ref|YP_003402543.1| - 7e-90 301.6 0.0 8.3e-90 301.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164264|ref|YP_003402543.1| - 1e-20 74.5 0.9 2.3e-20 73.3 0.9 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|284164264|ref|YP_003402543.1| - 8.7e-14 51.2 2.8 8.7e-14 51.2 2.8 2.2 3 0 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus BAT PF15915.5 gi|284164265|ref|YP_003402544.1| - 5.2e-47 159.6 11.4 5.2e-47 159.6 11.4 2.7 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284164265|ref|YP_003402544.1| - 6e-18 64.4 0.1 1.6e-17 63.1 0.0 1.8 2 0 0 2 2 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|284164265|ref|YP_003402544.1| - 9.5e-11 41.9 0.0 2.4e-10 40.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain Phage_integrase PF00589.22 gi|284164265|ref|YP_003402544.1| - 2.6e-10 40.4 0.0 1.3e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 Phage integrase family PAS_4 PF08448.10 gi|284164265|ref|YP_003402544.1| - 3.9e-10 39.9 0.6 2e-09 37.7 0.6 2.3 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|284164265|ref|YP_003402544.1| - 1.4e-09 37.9 0.1 4.8e-09 36.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|284164265|ref|YP_003402544.1| - 1.3e-06 28.8 3.1 5.4e-06 26.7 0.6 2.5 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|284164265|ref|YP_003402544.1| - 2.3e-06 28.0 0.1 6.4e-05 23.3 0.0 2.6 2 1 0 2 2 2 1 GAF domain GAF PF01590.26 gi|284164265|ref|YP_003402544.1| - 0.004 17.8 0.1 0.019 15.6 0.1 2.2 1 1 1 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|284164265|ref|YP_003402544.1| - 0.0046 16.9 0.0 0.051 13.6 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|284164265|ref|YP_003402544.1| - 0.0056 17.3 0.0 0.013 16.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain HTH_20 PF12840.7 gi|284164265|ref|YP_003402544.1| - 0.0068 16.4 0.0 0.04 14.0 0.0 2.3 1 0 0 1 1 1 1 Helix-turn-helix domain PAS_3 PF08447.12 gi|284164265|ref|YP_003402544.1| - 0.013 15.7 0.1 0.042 14.1 0.1 1.9 1 0 0 1 1 1 0 PAS fold Sigma70_r4 PF04545.16 gi|284164265|ref|YP_003402544.1| - 0.015 14.8 0.0 0.061 12.8 0.0 2.1 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|284164265|ref|YP_003402544.1| - 0.039 13.6 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|284164265|ref|YP_003402544.1| - 0.079 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284164265|ref|YP_003402544.1| - 0.097 12.2 0.0 0.25 10.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|284164265|ref|YP_003402544.1| - 3.5 7.5 5.4 3.9 7.4 0.0 3.8 4 0 0 4 4 4 0 Homeodomain-like domain AMP-binding PF00501.28 gi|284164266|ref|YP_003402545.1| - 7e-93 311.5 0.0 9e-93 311.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164266|ref|YP_003402545.1| - 3e-19 69.8 0.4 6.3e-19 68.7 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|284164266|ref|YP_003402545.1| - 1.4e-13 50.5 2.1 1.4e-13 50.5 2.1 1.9 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Na_H_Exchanger PF00999.21 gi|284164267|ref|YP_003402546.1| - 2.2e-50 171.6 49.2 2.8e-50 171.2 49.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|284164267|ref|YP_003402546.1| - 2e-08 34.9 0.8 4.3e-08 33.8 0.8 1.5 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|284164268|ref|YP_003402547.1| - 7.7e-12 45.9 0.3 9.2e-12 45.7 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|284164268|ref|YP_003402547.1| - 0.0013 18.7 0.5 0.29 11.0 0.5 2.7 1 1 0 1 1 1 1 Electron transfer flavoprotein domain DUF2299 PF10061.9 gi|284164269|ref|YP_003402548.1| - 0.043 13.6 0.0 0.073 12.8 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) PDGF_N PF04692.13 gi|284164270|ref|YP_003402549.1| - 0.13 13.1 0.3 0.41 11.5 0.3 1.9 1 0 0 1 1 1 0 Platelet-derived growth factor, N terminal region Rick_17kDa_Anti PF05433.15 gi|284164272|ref|YP_003402551.1| - 0.035 14.0 0.2 0.055 13.3 0.2 1.3 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|284164272|ref|YP_003402551.1| - 0.04 13.7 1.5 0.063 13.0 1.5 1.2 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|284164272|ref|YP_003402551.1| - 0.049 13.6 1.6 0.072 13.1 1.6 1.3 1 0 0 1 1 1 0 Glycine zipper Plasmodium_Vir PF05795.11 gi|284164272|ref|YP_003402551.1| - 0.8 9.1 8.7 0.86 9.0 8.7 1.2 1 0 0 1 1 1 0 Plasmodium vivax Vir protein Neur_chan_memb PF02932.16 gi|284164272|ref|YP_003402551.1| - 2.5 8.1 3.3 2.5 8.1 3.3 1.2 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Hid1 PF12722.7 gi|284164272|ref|YP_003402551.1| - 3.3 5.7 15.3 3.1 5.8 15.3 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Apt1 PF10351.9 gi|284164272|ref|YP_003402551.1| - 8.2 5.2 15.4 10 4.8 15.4 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain AsmA_1 PF13109.6 gi|284164273|ref|YP_003402552.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 AsmA-like C-terminal region PQQ_2 PF13360.6 gi|284164274|ref|YP_003402553.1| - 5.5e-11 42.5 14.0 3.3e-05 23.6 1.0 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|284164274|ref|YP_003402553.1| - 1.5e-10 40.5 7.0 1e-05 25.2 0.3 4.9 5 0 0 5 5 5 2 PQQ enzyme repeat PQQ_3 PF13570.6 gi|284164274|ref|YP_003402553.1| - 2.8e-06 27.6 27.5 2.2 8.9 0.4 8.4 8 0 0 8 8 8 6 PQQ-like domain Arylsulfotrans PF05935.11 gi|284164274|ref|YP_003402553.1| - 0.027 13.4 0.0 0.11 11.3 0.0 1.9 2 0 0 2 2 2 0 Arylsulfotransferase (ASST) DUF3209 PF11483.8 gi|284164275|ref|YP_003402554.1| - 1.8e-55 186.7 2.1 2e-55 186.6 2.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) CbiX PF01903.17 gi|284164276|ref|YP_003402555.1| - 2.3e-42 143.7 0.0 8e-20 71.2 0.1 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|284164276|ref|YP_003402555.1| - 1.7e-07 31.2 0.1 2.9e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|284164276|ref|YP_003402555.1| - 9e-05 21.9 0.0 0.37 10.1 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|284164276|ref|YP_003402555.1| - 0.0056 16.6 0.0 0.05 13.5 0.0 1.9 2 1 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|284164276|ref|YP_003402555.1| - 0.15 12.5 0.5 7.3 7.1 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) Spectrin_like PF18373.1 gi|284164277|ref|YP_003402556.1| - 0.099 12.7 0.0 3.2 7.9 0.0 2.3 2 0 0 2 2 2 0 Spectrin like domain Fer4_15 PF13459.6 gi|284164278|ref|YP_003402557.1| - 6.5e-18 65.2 9.0 7.7e-18 65.0 9.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|284164278|ref|YP_003402557.1| - 0.0041 17.6 5.2 0.0076 16.8 5.2 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|284164278|ref|YP_003402557.1| - 0.034 14.2 0.4 2.6 8.2 0.4 2.3 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|284164278|ref|YP_003402557.1| - 1.1 9.5 7.1 8 6.7 0.1 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain TP_methylase PF00590.20 gi|284164279|ref|YP_003402558.1| - 2.5e-39 135.4 0.2 3.1e-39 135.1 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Macoilin PF09726.9 gi|284164279|ref|YP_003402558.1| - 0.12 10.9 4.7 0.13 10.8 4.7 1.1 1 0 0 1 1 1 0 Macoilin family Apt1 PF10351.9 gi|284164279|ref|YP_003402558.1| - 0.33 9.8 5.4 0.36 9.6 5.4 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TP_methylase PF00590.20 gi|284164280|ref|YP_003402559.1| - 1.7e-43 149.0 0.1 2.2e-43 148.7 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|284164281|ref|YP_003402560.1| - 2.7e-27 94.6 0.0 8.9e-27 92.9 0.0 1.9 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|284164281|ref|YP_003402560.1| - 5.6e-22 78.5 0.4 1.1e-21 77.5 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|284164281|ref|YP_003402560.1| - 0.00025 21.7 0.3 0.00091 19.8 0.3 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|284164282|ref|YP_003402561.1| - 1.1e-37 130.1 0.1 1.4e-37 129.7 0.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|284164282|ref|YP_003402561.1| - 0.0065 16.9 0.3 0.017 15.5 0.1 1.9 1 1 1 2 2 2 1 Radical SAM superfamily PhoU_div PF01865.16 gi|284164282|ref|YP_003402561.1| - 0.095 12.0 0.1 9.2 5.5 0.1 2.4 1 1 0 2 2 2 0 Protein of unknown function DUF47 TP_methylase PF00590.20 gi|284164283|ref|YP_003402562.1| - 1.5e-37 129.6 0.5 2.4e-37 128.9 0.5 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_25 PF13649.6 gi|284164284|ref|YP_003402563.1| - 0.00034 21.3 0.1 0.00056 20.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|284164284|ref|YP_003402563.1| - 0.00089 18.9 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|284164284|ref|YP_003402563.1| - 0.006 17.2 0.2 0.012 16.3 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284164284|ref|YP_003402563.1| - 0.011 15.5 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|284164284|ref|YP_003402563.1| - 0.013 15.1 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase small domain GATase_3 PF07685.14 gi|284164284|ref|YP_003402563.1| - 0.018 14.7 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DOT1 PF08123.13 gi|284164284|ref|YP_003402563.1| - 0.17 11.4 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 adh_short_C2 PF13561.6 gi|284164285|ref|YP_003402564.1| - 4.5e-66 222.8 0.2 5.3e-66 222.5 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284164285|ref|YP_003402564.1| - 1.3e-60 204.2 0.1 1.5e-60 204.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284164285|ref|YP_003402564.1| - 6.3e-22 78.4 0.1 9e-22 77.8 0.1 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284164285|ref|YP_003402564.1| - 0.0026 17.3 0.1 0.0036 16.8 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Glyco_transf_21 PF13506.6 gi|284164286|ref|YP_003402565.1| - 1.1e-11 44.5 0.0 1.8e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|284164286|ref|YP_003402565.1| - 4.1e-07 30.1 0.0 5.7e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|284164286|ref|YP_003402565.1| - 7e-07 29.2 0.1 1.2e-06 28.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GATase_3 PF07685.14 gi|284164287|ref|YP_003402566.1| - 5.7e-33 114.2 0.0 7.3e-33 113.8 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|284164287|ref|YP_003402566.1| - 1.9e-11 44.1 0.0 3.5e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|284164287|ref|YP_003402566.1| - 1.7e-10 41.1 0.0 5.2e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain CTP_synth_N PF06418.14 gi|284164287|ref|YP_003402566.1| - 0.0029 17.0 0.1 0.0044 16.4 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus SNO PF01174.19 gi|284164287|ref|YP_003402566.1| - 0.046 13.6 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DUF1802 PF08819.11 gi|284164288|ref|YP_003402567.1| - 1.8e-41 141.8 0.0 2.1e-41 141.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) HigB-like_toxin PF05015.13 gi|284164289|ref|YP_003402568.1| - 0.072 13.5 0.1 0.079 13.4 0.1 1.1 1 0 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB Methyltransf_11 PF08241.12 gi|284164290|ref|YP_003402569.1| - 5.2e-25 87.9 0.0 8.1e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164290|ref|YP_003402569.1| - 1.2e-22 80.4 0.0 2.1e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164290|ref|YP_003402569.1| - 1.1e-20 74.0 0.0 1.4e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164290|ref|YP_003402569.1| - 1.9e-17 63.6 0.0 2.6e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164290|ref|YP_003402569.1| - 2.2e-17 63.2 0.0 2e-16 60.1 0.0 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|284164290|ref|YP_003402569.1| - 4.3e-15 56.3 0.0 7.4e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284164290|ref|YP_003402569.1| - 1.1e-06 28.3 0.0 1.7e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|284164290|ref|YP_003402569.1| - 8.3e-05 22.6 0.0 0.00057 19.9 0.0 1.9 1 1 1 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|284164290|ref|YP_003402569.1| - 0.00012 21.8 0.0 0.00016 21.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.14 gi|284164290|ref|YP_003402569.1| - 0.00017 21.0 0.0 0.00024 20.6 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB PCMT PF01135.19 gi|284164290|ref|YP_003402569.1| - 0.00029 20.7 0.0 0.00043 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|284164290|ref|YP_003402569.1| - 0.001 18.2 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase TPMT PF05724.11 gi|284164290|ref|YP_003402569.1| - 0.0013 18.5 0.0 0.0021 17.8 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|284164290|ref|YP_003402569.1| - 0.0013 18.2 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) GidB PF02527.15 gi|284164290|ref|YP_003402569.1| - 0.0036 16.7 0.0 0.015 14.7 0.0 1.8 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G MetW PF07021.12 gi|284164290|ref|YP_003402569.1| - 0.0039 16.8 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|284164290|ref|YP_003402569.1| - 0.008 15.5 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.12 gi|284164290|ref|YP_003402569.1| - 0.0082 15.7 0.0 0.016 14.7 0.0 1.5 1 1 0 1 1 1 1 AdoMet dependent proline di-methyltransferase AdoMet_MTase PF07757.13 gi|284164290|ref|YP_003402569.1| - 0.0091 16.3 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase Methyltransf_18 PF12847.7 gi|284164290|ref|YP_003402569.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|284164290|ref|YP_003402569.1| - 0.03 13.6 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_9 PF08003.11 gi|284164290|ref|YP_003402569.1| - 0.043 12.7 0.0 0.055 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|284164290|ref|YP_003402569.1| - 0.093 11.8 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TP_methylase PF00590.20 gi|284164291|ref|YP_003402570.1| - 1.2e-33 116.9 1.1 1.4e-33 116.6 1.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|284164292|ref|YP_003402571.1| - 9.8e-52 175.5 1.2 1.2e-51 175.2 1.2 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.16 gi|284164293|ref|YP_003402572.1| - 0 1256.1 0.0 0 1255.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|284164293|ref|YP_003402572.1| - 0.0054 16.5 0.0 0.017 14.9 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain AP_endonuc_2 PF01261.24 gi|284164293|ref|YP_003402572.1| - 0.028 13.9 1.2 0.16 11.4 1.1 2.4 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel AAA_lid_2 PF17863.1 gi|284164294|ref|YP_003402573.1| - 6.2e-21 74.0 0.6 6.2e-21 74.0 0.6 3.0 3 0 0 3 3 3 1 AAA lid domain VWA_2 PF13519.6 gi|284164294|ref|YP_003402573.1| - 1.1e-12 48.5 0.0 2.5e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|284164294|ref|YP_003402573.1| - 6.2e-12 45.3 0.1 6.7e-09 35.4 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.28 gi|284164294|ref|YP_003402573.1| - 8e-10 39.2 0.0 1.3e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|284164294|ref|YP_003402573.1| - 3.6e-07 30.3 0.0 0.00073 19.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|284164294|ref|YP_003402573.1| - 4.4e-05 22.7 0.0 0.0006 19.0 0.0 2.2 2 0 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|284164294|ref|YP_003402573.1| - 0.0035 17.1 0.0 0.051 13.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain adh_short_C2 PF13561.6 gi|284164294|ref|YP_003402573.1| - 0.043 13.4 1.9 0.11 12.0 1.9 1.6 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase AAA_16 PF13191.6 gi|284164294|ref|YP_003402573.1| - 0.054 13.9 6.0 0.21 12.0 0.3 3.5 3 1 0 3 3 3 0 AAA ATPase domain AAA_22 PF13401.6 gi|284164294|ref|YP_003402573.1| - 0.11 12.7 0.0 2.5 8.4 0.0 3.1 4 1 0 4 4 4 0 AAA domain Mg_chelatase_C PF13335.6 gi|284164294|ref|YP_003402573.1| - 0.94 10.2 5.4 0.43 11.2 1.2 2.5 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal Xan_ur_permease PF00860.20 gi|284164295|ref|YP_003402574.1| - 3.8e-76 256.3 39.1 7.5e-76 255.3 39.1 1.4 1 1 0 1 1 1 1 Permease family DUF2061 PF09834.9 gi|284164295|ref|YP_003402574.1| - 6.1 7.4 7.6 2.7 8.5 0.4 3.7 3 0 0 3 3 3 0 Predicted membrane protein (DUF2061) Abhydrolase_1 PF00561.20 gi|284164296|ref|YP_003402575.1| - 2.4e-21 76.5 0.0 3.7e-19 69.4 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284164296|ref|YP_003402575.1| - 4e-21 76.6 0.4 4.6e-21 76.4 0.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284164296|ref|YP_003402575.1| - 1.7e-18 66.7 0.0 4.1e-18 65.5 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|284164296|ref|YP_003402575.1| - 0.00037 19.3 0.0 0.0085 14.8 0.0 2.0 2 0 0 2 2 2 1 Ndr family Abhydrolase_4 PF08386.10 gi|284164296|ref|YP_003402575.1| - 0.19 11.8 0.1 0.38 10.9 0.0 1.5 2 0 0 2 2 2 0 TAP-like protein Cnd1 PF12717.7 gi|284164296|ref|YP_003402575.1| - 0.25 11.4 0.0 0.46 10.5 0.0 1.4 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1 PQQ_2 PF13360.6 gi|284164297|ref|YP_003402576.1| - 6.7e-35 120.8 18.3 1.3e-15 57.7 3.3 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|284164297|ref|YP_003402576.1| - 2.1e-29 101.2 48.9 1.2e-06 28.8 0.5 8.6 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|284164297|ref|YP_003402576.1| - 1.7e-24 84.5 18.8 0.0054 16.6 0.0 8.7 8 0 0 8 8 8 8 PQQ enzyme repeat CDC48_N PF02359.18 gi|284164298|ref|YP_003402577.1| - 0.1 12.8 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain DUF1465 PF07323.12 gi|284164299|ref|YP_003402578.1| - 0.0019 18.1 0.7 0.0019 18.1 0.7 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1465) HAP1_N PF04849.13 gi|284164299|ref|YP_003402578.1| - 0.0021 17.4 4.5 0.0025 17.1 4.5 1.1 1 0 0 1 1 1 1 HAP1 N-terminal conserved region Arfaptin PF06456.13 gi|284164299|ref|YP_003402578.1| - 0.0032 17.1 0.5 0.0036 16.9 0.5 1.2 1 0 0 1 1 1 1 Arfaptin-like domain BLOC1_2 PF10046.9 gi|284164299|ref|YP_003402578.1| - 0.0036 17.6 1.4 0.0058 16.9 1.4 1.4 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 GIT_CC PF16559.5 gi|284164299|ref|YP_003402578.1| - 0.0041 17.0 0.2 0.008 16.0 0.2 1.5 1 0 0 1 1 1 1 GIT coiled-coil Rho guanine nucleotide exchange factor DUF3287 PF11690.8 gi|284164299|ref|YP_003402578.1| - 0.0069 16.1 0.4 0.0089 15.7 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3287) DUF1664 PF07889.12 gi|284164299|ref|YP_003402578.1| - 0.013 15.5 1.4 0.024 14.7 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Clp_N PF02861.20 gi|284164299|ref|YP_003402578.1| - 0.014 15.5 1.7 0.028 14.5 1.7 1.4 1 0 0 1 1 1 0 Clp amino terminal domain, pathogenicity island component AAA_13 PF13166.6 gi|284164299|ref|YP_003402578.1| - 0.04 12.6 4.7 0.013 14.1 2.4 1.4 1 1 0 1 1 1 0 AAA domain DUF948 PF06103.11 gi|284164299|ref|YP_003402578.1| - 0.047 13.9 0.4 0.047 13.9 0.4 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Tropomyosin PF00261.20 gi|284164299|ref|YP_003402578.1| - 0.047 13.0 13.1 0.08 12.3 13.1 1.3 1 1 0 1 1 1 0 Tropomyosin DUF4988 PF16378.5 gi|284164299|ref|YP_003402578.1| - 0.048 13.3 1.1 0.072 12.8 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function NPV_P10 PF05531.12 gi|284164299|ref|YP_003402578.1| - 0.062 13.8 1.4 0.085 13.3 1.4 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Herpes_UL6 PF01763.16 gi|284164299|ref|YP_003402578.1| - 0.092 11.3 3.3 0.098 11.2 3.3 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like CpxA_peri PF16527.5 gi|284164299|ref|YP_003402578.1| - 0.12 12.7 0.6 0.15 12.4 0.6 1.2 1 0 0 1 1 1 0 Two-component sensor protein CpxA, periplasmic domain Gly_acyl_tr_C PF08444.10 gi|284164299|ref|YP_003402578.1| - 0.13 12.5 0.1 0.18 12.1 0.1 1.1 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region TMPIT PF07851.13 gi|284164299|ref|YP_003402578.1| - 0.14 11.4 0.6 0.18 11.0 0.6 1.1 1 0 0 1 1 1 0 TMPIT-like protein YabA PF06156.13 gi|284164299|ref|YP_003402578.1| - 0.31 11.7 3.4 0.47 11.1 3.4 1.5 1 1 0 1 1 1 0 Initiation control protein YabA DASH_Dam1 PF08653.10 gi|284164299|ref|YP_003402578.1| - 0.31 10.9 0.9 2.1 8.2 0.1 2.1 1 1 1 2 2 2 0 DASH complex subunit Dam1 Tropomyosin_1 PF12718.7 gi|284164299|ref|YP_003402578.1| - 0.48 10.6 14.7 1.3 9.2 14.7 1.7 1 1 0 1 1 1 0 Tropomyosin like CLZ PF16526.5 gi|284164299|ref|YP_003402578.1| - 0.53 10.7 7.6 0.23 11.9 1.3 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MRPL52 PF18699.1 gi|284164299|ref|YP_003402578.1| - 0.79 9.9 4.5 0.18 12.0 1.6 1.6 2 0 0 2 2 1 0 Mitoribosomal protein mL52 bZIP_2 PF07716.15 gi|284164299|ref|YP_003402578.1| - 1.3 9.2 4.9 0.42 10.7 1.9 1.7 2 0 0 2 2 2 0 Basic region leucine zipper SlyX PF04102.12 gi|284164299|ref|YP_003402578.1| - 1.4 9.6 11.9 0.81 10.4 7.0 2.2 1 1 1 2 2 2 0 SlyX Spc24 PF08286.11 gi|284164299|ref|YP_003402578.1| - 1.9 8.7 9.4 9.7 6.5 9.4 2.1 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 V_ATPase_I PF01496.19 gi|284164299|ref|YP_003402578.1| - 3.5 5.4 5.2 3.6 5.4 5.2 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIC PF04977.15 gi|284164299|ref|YP_003402578.1| - 4.8 7.0 8.8 0.2 11.4 2.4 1.9 2 1 0 2 2 2 0 Septum formation initiator FUSC PF04632.12 gi|284164299|ref|YP_003402578.1| - 6.7 5.1 6.1 7 5.0 6.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family GvpG PF05120.12 gi|284164299|ref|YP_003402578.1| - 9.8 6.3 10.5 2 8.4 3.2 2.3 1 1 1 2 2 2 0 Gas vesicle protein G PALP PF00291.25 gi|284164300|ref|YP_003402579.1| - 2e-60 204.7 2.6 2.3e-60 204.5 2.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CoA_binding_2 PF13380.6 gi|284164301|ref|YP_003402580.1| - 5.2e-38 130.1 0.1 6.1e-38 129.9 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|284164301|ref|YP_003402580.1| - 1.6e-06 28.7 0.0 2.3e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain DUF169 PF02596.15 gi|284164301|ref|YP_003402580.1| - 0.092 12.7 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ArCR, COG2043 GFO_IDH_MocA PF01408.22 gi|284164301|ref|YP_003402580.1| - 0.14 13.0 0.1 0.66 10.8 0.0 1.9 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DUF835 PF05763.12 gi|284164302|ref|YP_003402581.1| - 3.4e-05 23.6 0.0 4.8e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PAXNEB PF05625.11 gi|284164302|ref|YP_003402581.1| - 0.00018 20.8 0.0 0.00018 20.8 0.0 1.1 1 0 0 1 1 1 1 PAXNEB protein ATPase PF06745.13 gi|284164302|ref|YP_003402581.1| - 0.00024 20.6 0.0 0.00047 19.6 0.0 1.5 1 1 0 1 1 1 1 KaiC DUF1477 PF07346.11 gi|284164302|ref|YP_003402581.1| - 0.027 14.7 0.1 0.059 13.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1477) UbiA PF01040.18 gi|284164303|ref|YP_003402582.1| - 9.4e-48 162.7 14.9 1.2e-47 162.3 14.9 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family ATP1G1_PLM_MAT8 PF02038.16 gi|284164303|ref|YP_003402582.1| - 0.3 10.5 0.8 2.4 7.7 0.1 2.7 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF2976 PF11190.8 gi|284164303|ref|YP_003402582.1| - 2.5 8.0 9.6 2.1 8.2 2.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2976) FAD_binding_3 PF01494.19 gi|284164305|ref|YP_003402584.1| - 1.5e-06 27.7 0.0 2e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|284164305|ref|YP_003402584.1| - 7.4e-05 22.1 0.0 0.18 11.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284164305|ref|YP_003402584.1| - 0.0002 21.1 1.0 0.0021 17.7 0.2 2.1 1 1 0 2 2 2 1 FAD dependent oxidoreductase SE PF08491.10 gi|284164305|ref|YP_003402584.1| - 0.0012 18.0 0.0 0.0016 17.6 0.0 1.2 1 0 0 1 1 1 1 Squalene epoxidase FAD_binding_2 PF00890.24 gi|284164305|ref|YP_003402584.1| - 0.0051 15.9 0.4 0.38 9.8 0.3 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|284164305|ref|YP_003402584.1| - 0.0083 15.5 0.8 0.69 9.2 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase GMC_oxred_N PF00732.19 gi|284164305|ref|YP_003402584.1| - 0.016 14.6 0.0 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase NAD_binding_8 PF13450.6 gi|284164305|ref|YP_003402584.1| - 0.039 14.2 1.2 0.092 13.0 0.2 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain MarR_2 PF12802.7 gi|284164306|ref|YP_003402585.1| - 0.00014 21.7 0.3 0.0019 18.1 0.1 2.4 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|284164306|ref|YP_003402585.1| - 0.00042 20.3 0.6 0.014 15.5 0.0 2.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|284164306|ref|YP_003402585.1| - 0.00061 19.8 0.2 0.013 15.5 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|284164306|ref|YP_003402585.1| - 0.00086 19.2 0.1 0.002 18.0 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|284164306|ref|YP_003402585.1| - 0.00091 19.2 0.1 0.0021 18.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|284164306|ref|YP_003402585.1| - 0.00094 19.1 0.1 0.0035 17.2 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.6 gi|284164306|ref|YP_003402585.1| - 0.00098 19.0 0.0 0.0033 17.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284164306|ref|YP_003402585.1| - 0.0014 18.6 0.3 0.0051 16.7 0.2 2.0 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|284164306|ref|YP_003402585.1| - 0.0017 18.1 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.6 gi|284164306|ref|YP_003402585.1| - 0.0017 18.3 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|284164306|ref|YP_003402585.1| - 0.0043 16.9 0.0 0.0086 15.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_54 PF18607.1 gi|284164306|ref|YP_003402585.1| - 0.019 15.0 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_24 PF13412.6 gi|284164306|ref|YP_003402585.1| - 0.038 13.6 0.1 0.078 12.5 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.19 gi|284164306|ref|YP_003402585.1| - 0.044 13.9 0.2 0.094 12.9 0.2 1.5 1 0 0 1 1 1 0 Trp repressor protein Penicillinase_R PF03965.16 gi|284164306|ref|YP_003402585.1| - 0.074 13.4 0.0 0.53 10.6 0.0 2.1 2 0 0 2 2 2 0 Penicillinase repressor DUF4423 PF14394.6 gi|284164306|ref|YP_003402585.1| - 0.083 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.21 gi|284164306|ref|YP_003402585.1| - 0.089 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|284164306|ref|YP_003402585.1| - 0.097 12.8 0.5 0.54 10.4 0.1 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284164306|ref|YP_003402585.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|284164306|ref|YP_003402585.1| - 0.11 12.3 0.1 0.3 10.9 0.1 1.7 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|284164306|ref|YP_003402585.1| - 0.13 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|284164306|ref|YP_003402585.1| - 0.14 12.0 0.3 0.49 10.3 0.2 1.9 2 0 0 2 2 2 0 Homeodomain-like domain MEDS PF14417.6 gi|284164307|ref|YP_003402586.1| - 3.5e-55 186.2 0.3 9.9e-55 184.8 0.3 1.9 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|284164307|ref|YP_003402586.1| - 4.6e-28 98.0 0.1 2.3e-27 95.7 0.0 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|284164307|ref|YP_003402586.1| - 5.4e-20 72.1 0.0 1.1e-16 61.4 0.0 3.0 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|284164307|ref|YP_003402586.1| - 4.3e-12 46.8 0.0 7.1e-11 42.9 0.0 2.6 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|284164307|ref|YP_003402586.1| - 8.3e-12 45.2 0.0 3.1e-11 43.4 0.0 2.0 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|284164307|ref|YP_003402586.1| - 5.5e-11 42.3 0.2 5.5e-11 42.3 0.2 3.9 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284164307|ref|YP_003402586.1| - 2.7e-10 40.5 0.1 6.1e-09 36.1 0.0 3.0 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.6 gi|284164307|ref|YP_003402586.1| - 7.6e-07 29.5 0.0 2.4e-05 24.7 0.0 2.9 3 0 0 3 3 3 1 GAF domain HATPase_c_5 PF14501.6 gi|284164307|ref|YP_003402586.1| - 8.7e-07 28.8 0.0 2.1e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 GHKL domain ATPase PF06745.13 gi|284164307|ref|YP_003402586.1| - 0.0009 18.7 0.0 0.0025 17.2 0.0 1.7 1 0 0 1 1 1 1 KaiC HATPase_c_3 PF13589.6 gi|284164307|ref|YP_003402586.1| - 0.0039 17.0 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284164307|ref|YP_003402586.1| - 0.058 13.4 0.2 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain SYF2 PF08231.12 gi|284164307|ref|YP_003402586.1| - 0.24 11.8 1.8 0.61 10.5 0.1 2.5 3 0 0 3 3 3 0 SYF2 splicing factor BBE PF08031.12 gi|284164308|ref|YP_003402587.1| - 0.00013 22.0 0.1 0.00019 21.5 0.1 1.3 1 0 0 1 1 1 1 Berberine and berberine like HTH_Crp_2 PF13545.6 gi|284164309|ref|YP_003402588.1| - 4e-06 26.7 0.2 7.2e-06 25.9 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|284164309|ref|YP_003402588.1| - 8.1e-06 25.6 0.1 1.6e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|284164309|ref|YP_003402588.1| - 0.00057 19.6 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284164309|ref|YP_003402588.1| - 0.002 18.0 0.6 0.0045 16.9 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|284164309|ref|YP_003402588.1| - 0.023 14.6 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF1724 PF08350.10 gi|284164309|ref|YP_003402588.1| - 0.027 14.6 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_24 PF13412.6 gi|284164309|ref|YP_003402588.1| - 0.1 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|284164309|ref|YP_003402588.1| - 0.19 11.6 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Lactamase_B PF00753.27 gi|284164310|ref|YP_003402589.1| - 1.5e-31 110.0 0.8 2e-31 109.6 0.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284164310|ref|YP_003402589.1| - 4.2e-05 23.1 0.1 7.8e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|284164310|ref|YP_003402589.1| - 0.0034 16.8 0.0 0.0048 16.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain FAD_binding_4 PF01565.23 gi|284164311|ref|YP_003402590.1| - 1.2e-33 115.7 2.2 2.1e-33 115.0 2.2 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|284164311|ref|YP_003402590.1| - 5e-13 48.9 0.1 1.2e-12 47.7 0.1 1.7 1 0 0 1 1 1 1 Berberine and berberine like OsmC PF02566.19 gi|284164312|ref|YP_003402591.1| - 4.2e-19 68.9 0.1 1.4e-18 67.2 0.0 1.8 2 1 0 2 2 2 1 OsmC-like protein Methyltransf_31 PF13847.6 gi|284164313|ref|YP_003402592.1| - 3.1e-29 101.8 0.0 3.9e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164313|ref|YP_003402592.1| - 5.4e-21 75.1 0.1 1.1e-20 74.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164313|ref|YP_003402592.1| - 1.5e-20 73.6 0.1 2.6e-20 72.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164313|ref|YP_003402592.1| - 1.2e-14 54.3 0.0 2.2e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|284164313|ref|YP_003402592.1| - 1.2e-10 42.0 0.1 2e-10 41.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164313|ref|YP_003402592.1| - 8e-10 38.8 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|284164313|ref|YP_003402592.1| - 4.5e-07 29.6 0.0 6.6e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|284164313|ref|YP_003402592.1| - 4.9e-06 26.0 0.0 9.7e-06 25.1 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|284164313|ref|YP_003402592.1| - 1.4e-05 24.9 0.0 2.1e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|284164313|ref|YP_003402592.1| - 0.00015 21.4 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|284164313|ref|YP_003402592.1| - 0.00027 20.0 0.0 0.00033 19.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|284164313|ref|YP_003402592.1| - 0.00043 20.3 0.0 0.00067 19.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|284164313|ref|YP_003402592.1| - 0.014 14.7 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_29 PF03141.16 gi|284164313|ref|YP_003402592.1| - 0.018 13.6 0.0 0.022 13.4 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|284164313|ref|YP_003402592.1| - 0.041 13.7 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase TehB PF03848.14 gi|284164313|ref|YP_003402592.1| - 0.18 11.2 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB MetW PF07021.12 gi|284164313|ref|YP_003402592.1| - 0.24 11.0 0.3 0.61 9.6 0.3 1.7 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_11 PF08241.12 gi|284164314|ref|YP_003402593.1| - 5.1e-25 87.9 0.0 8.2e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164314|ref|YP_003402593.1| - 4.1e-24 85.1 0.0 6.8e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164314|ref|YP_003402593.1| - 4.1e-17 62.4 0.0 5.9e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164314|ref|YP_003402593.1| - 5.5e-17 61.9 0.0 8.4e-17 61.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284164314|ref|YP_003402593.1| - 1.2e-13 51.2 0.0 2e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164314|ref|YP_003402593.1| - 3.3e-10 40.6 0.0 5.6e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284164314|ref|YP_003402593.1| - 8.4e-06 25.7 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0020 PF01170.18 gi|284164314|ref|YP_003402593.1| - 3.7e-05 23.5 0.0 0.00039 20.2 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|284164314|ref|YP_003402593.1| - 5.5e-05 22.8 0.0 9.8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|284164314|ref|YP_003402593.1| - 6e-05 22.6 0.0 0.0001 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|284164314|ref|YP_003402593.1| - 0.00012 21.4 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|284164314|ref|YP_003402593.1| - 0.0021 17.4 0.0 0.0032 16.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|284164314|ref|YP_003402593.1| - 0.017 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|284164314|ref|YP_003402593.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|284164314|ref|YP_003402593.1| - 0.033 13.8 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) TehB PF03848.14 gi|284164314|ref|YP_003402593.1| - 0.19 11.1 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB MarR_2 PF12802.7 gi|284164315|ref|YP_003402594.1| - 0.023 14.6 0.1 0.068 13.1 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|284164315|ref|YP_003402594.1| - 0.026 14.3 0.0 0.061 13.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|284164315|ref|YP_003402594.1| - 0.035 14.0 0.0 0.067 13.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|284164315|ref|YP_003402594.1| - 0.079 13.0 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix FAD_binding_4 PF01565.23 gi|284164316|ref|YP_003402595.1| - 3e-34 117.8 3.7 3e-34 117.8 3.7 1.5 2 0 0 2 2 2 1 FAD binding domain BBE PF08031.12 gi|284164316|ref|YP_003402595.1| - 1.5e-08 34.6 0.0 3.2e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Berberine and berberine like Cytokin-bind PF09265.10 gi|284164316|ref|YP_003402595.1| - 0.18 11.2 0.0 0.33 10.3 0.0 1.5 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding TraQ PF09679.10 gi|284164317|ref|YP_003402596.1| - 0.011 15.6 1.2 0.013 15.4 1.2 1.2 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) TauE PF01925.19 gi|284164318|ref|YP_003402597.1| - 3.6e-38 131.5 49.8 3.6e-38 131.5 49.8 1.4 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE ABM PF03992.16 gi|284164319|ref|YP_003402598.1| - 0.0016 18.5 0.3 0.0031 17.6 0.2 1.4 2 0 0 2 2 2 1 Antibiotic biosynthesis monooxygenase CHASE2 PF05226.11 gi|284164319|ref|YP_003402598.1| - 0.0052 16.5 0.0 0.006 16.3 0.0 1.0 1 0 0 1 1 1 1 CHASE2 domain Methyltransf_31 PF13847.6 gi|284164320|ref|YP_003402599.1| - 6e-17 61.8 0.0 7.8e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164320|ref|YP_003402599.1| - 9.3e-13 48.7 0.3 1.5e-12 48.0 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164320|ref|YP_003402599.1| - 4e-12 46.7 0.0 8.7e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164320|ref|YP_003402599.1| - 3.4e-10 40.0 0.0 5.3e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164320|ref|YP_003402599.1| - 1.7e-09 38.2 0.1 2.8e-09 37.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284164320|ref|YP_003402599.1| - 7.6e-08 32.1 0.0 1.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|284164320|ref|YP_003402599.1| - 6.3e-07 29.4 0.0 2.6e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|284164320|ref|YP_003402599.1| - 6.5e-06 25.7 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|284164320|ref|YP_003402599.1| - 4.5e-05 22.9 0.0 6.3e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|284164320|ref|YP_003402599.1| - 4.9e-05 22.7 0.1 6.7e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_24 PF13578.6 gi|284164320|ref|YP_003402599.1| - 0.00029 21.8 1.1 0.00069 20.6 0.8 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|284164320|ref|YP_003402599.1| - 0.00081 18.6 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase PrmA PF06325.13 gi|284164320|ref|YP_003402599.1| - 0.001 18.5 0.1 0.0015 18.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|284164320|ref|YP_003402599.1| - 0.002 17.5 0.0 0.0034 16.8 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|284164320|ref|YP_003402599.1| - 0.0024 17.6 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|284164320|ref|YP_003402599.1| - 0.0029 17.3 0.1 0.0042 16.8 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_32 PF13679.6 gi|284164320|ref|YP_003402599.1| - 0.0032 17.5 0.0 0.0048 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|284164320|ref|YP_003402599.1| - 0.02 14.6 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 HTH_20 PF12840.7 gi|284164320|ref|YP_003402599.1| - 0.051 13.6 0.1 0.45 10.6 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Methyltransf_15 PF09445.10 gi|284164320|ref|YP_003402599.1| - 0.067 12.8 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MarR_2 PF12802.7 gi|284164321|ref|YP_003402600.1| - 6.9e-05 22.7 0.3 0.0002 21.2 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|284164321|ref|YP_003402600.1| - 0.00034 20.3 0.1 0.0038 17.0 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HemN_C PF06969.16 gi|284164321|ref|YP_003402600.1| - 0.0088 16.1 1.3 0.016 15.2 0.2 1.9 2 0 0 2 2 2 1 HemN C-terminal domain TrmB PF01978.19 gi|284164321|ref|YP_003402600.1| - 0.017 15.0 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pro-kuma_activ PF09286.11 gi|284164321|ref|YP_003402600.1| - 0.051 13.9 0.0 0.075 13.3 0.0 1.2 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_45 PF14947.6 gi|284164321|ref|YP_003402600.1| - 0.096 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MFS_1 PF07690.16 gi|284164322|ref|YP_003402601.1| - 4.5e-42 144.3 66.8 6e-37 127.4 42.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Complex1_51K PF01512.17 gi|284164323|ref|YP_003402602.1| - 7.2e-19 68.1 0.0 1.3e-18 67.4 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|284164323|ref|YP_003402602.1| - 2.2e-18 66.1 0.8 4.3e-18 65.2 0.8 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Glyco_tranf_2_4 PF13704.6 gi|284164323|ref|YP_003402602.1| - 0.087 13.4 0.0 0.21 12.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Molybdopterin PF00384.22 gi|284164324|ref|YP_003402603.1| - 2.1e-84 284.0 0.0 2.7e-84 283.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284164324|ref|YP_003402603.1| - 7.8e-29 99.9 0.0 1.8e-28 98.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|284164324|ref|YP_003402603.1| - 9.5e-22 76.9 0.6 2.4e-21 75.6 0.6 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|284164324|ref|YP_003402603.1| - 2.1e-12 46.4 1.8 2.1e-12 46.4 1.8 2.2 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 gi|284164324|ref|YP_003402603.1| - 1.5e-11 44.1 0.1 1.5e-11 44.1 0.1 2.3 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_6 PF12837.7 gi|284164324|ref|YP_003402603.1| - 3.7e-10 39.4 20.2 4.9e-07 29.6 1.0 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284164324|ref|YP_003402603.1| - 4.7e-09 36.2 8.3 4.7e-09 36.2 8.3 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284164324|ref|YP_003402603.1| - 6.4e-09 36.3 18.5 4.2e-08 33.7 9.8 4.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284164324|ref|YP_003402603.1| - 5.6e-08 32.3 13.0 1.1e-06 28.2 1.5 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284164324|ref|YP_003402603.1| - 7.7e-07 29.2 7.5 7.7e-07 29.2 7.5 4.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284164324|ref|YP_003402603.1| - 1.2e-05 25.3 5.1 0.0011 19.0 0.2 4.2 4 1 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284164324|ref|YP_003402603.1| - 8.9e-05 22.9 8.3 8.9e-05 22.9 8.3 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284164324|ref|YP_003402603.1| - 0.00018 22.1 11.2 0.013 16.2 0.6 4.0 4 0 0 4 4 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|284164324|ref|YP_003402603.1| - 0.00047 20.6 9.1 0.093 13.3 0.6 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|284164324|ref|YP_003402603.1| - 0.00051 20.9 0.4 0.00051 20.9 0.4 4.2 5 0 0 5 5 4 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|284164324|ref|YP_003402603.1| - 0.0014 18.6 15.2 0.0024 17.9 4.3 4.5 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284164324|ref|YP_003402603.1| - 0.027 14.6 0.9 0.027 14.6 0.9 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|284164324|ref|YP_003402603.1| - 0.74 10.7 16.1 0.098 13.5 0.8 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain MaoC_dehydratas PF01575.19 gi|284164326|ref|YP_003402605.1| - 5.2e-19 68.0 0.1 8.4e-19 67.3 0.1 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284164326|ref|YP_003402605.1| - 2.1e-05 24.7 0.0 6.4e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|284164326|ref|YP_003402605.1| - 0.085 13.2 0.1 0.17 12.2 0.1 1.6 1 0 0 1 1 1 0 Thioesterase superfamily DUF296 PF03479.15 gi|284164326|ref|YP_003402605.1| - 0.11 12.8 0.0 0.91 9.9 0.0 2.1 2 0 0 2 2 2 0 Plants and Prokaryotes Conserved (PCC) domain LolA_like PF17131.4 gi|284164327|ref|YP_003402606.1| - 8.3e-06 25.7 5.9 0.00028 20.7 5.9 2.9 1 1 0 1 1 1 1 Outer membrane lipoprotein-sorting protein DUF2092 PF09865.9 gi|284164327|ref|YP_003402606.1| - 2.4e-05 23.8 0.0 0.00052 19.4 0.0 2.3 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MucB_RseB PF03888.14 gi|284164327|ref|YP_003402606.1| - 0.0029 17.2 0.1 0.03 13.9 0.1 2.1 2 0 0 2 2 2 1 MucB/RseB N-terminal domain DUF1571 PF07608.11 gi|284164327|ref|YP_003402606.1| - 0.016 14.7 0.5 0.043 13.3 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1571) MS_channel PF00924.18 gi|284164328|ref|YP_003402607.1| - 2.3e-49 167.8 0.0 3.1e-49 167.3 0.0 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel CRS1_YhbY PF01985.21 gi|284164329|ref|YP_003402608.1| - 1.1e-14 54.3 0.0 1.2e-14 54.2 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF3168 PF11367.8 gi|284164329|ref|YP_003402608.1| - 0.071 13.3 2.4 0.25 11.5 2.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3168) Rpr2 PF04032.16 gi|284164330|ref|YP_003402609.1| - 1.1e-12 48.1 0.0 1.3e-12 47.8 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain ERp29 PF07749.12 gi|284164330|ref|YP_003402609.1| - 0.039 14.8 0.0 0.048 14.6 0.0 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain SBP_bac_5 PF00496.22 gi|284164331|ref|YP_003402610.1| - 9.8e-45 153.1 0.0 2.9e-39 135.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle PAP2_3 PF14378.6 gi|284164332|ref|YP_003402611.1| - 2.6e-17 63.1 12.6 4.7e-17 62.3 12.6 1.4 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|284164332|ref|YP_003402611.1| - 1.7e-13 50.5 1.8 1.7e-13 50.5 1.8 1.8 2 1 0 2 2 2 1 PAP2 superfamily UPF0016 PF01169.19 gi|284164332|ref|YP_003402611.1| - 0.0093 16.3 0.3 0.0093 16.3 0.3 2.9 3 1 0 3 3 3 1 Uncharacterized protein family UPF0016 DUF4191 PF13829.6 gi|284164332|ref|YP_003402611.1| - 0.44 9.9 2.0 0.36 10.1 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF3188 PF11384.8 gi|284164332|ref|YP_003402611.1| - 0.81 9.4 10.2 2.7 7.8 0.8 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) PAP2_C PF14360.6 gi|284164332|ref|YP_003402611.1| - 0.89 10.1 9.5 0.081 13.5 4.1 2.1 2 1 0 2 2 2 0 PAP2 superfamily C-terminal HypA PF01155.19 gi|284164334|ref|YP_003402613.1| - 0.0042 17.1 0.2 0.005 16.9 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|284164334|ref|YP_003402613.1| - 0.0047 16.8 0.7 0.49 10.3 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|284164334|ref|YP_003402613.1| - 0.005 16.8 0.8 0.0078 16.2 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|284164334|ref|YP_003402613.1| - 0.0091 16.2 3.2 0.019 15.2 3.2 1.5 1 0 0 1 1 1 1 zinc-ribbon Zn_Tnp_IS91 PF14319.6 gi|284164334|ref|YP_003402613.1| - 0.0097 15.9 0.2 0.012 15.6 0.2 1.2 1 0 0 1 1 1 1 Transposase zinc-binding domain zf-C3HC4_3 PF13920.6 gi|284164334|ref|YP_003402613.1| - 0.021 14.7 0.2 0.031 14.1 0.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.10 gi|284164334|ref|YP_003402613.1| - 0.024 14.7 1.5 0.05 13.7 1.5 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.11 gi|284164334|ref|YP_003402613.1| - 0.03 14.3 0.4 0.036 14.1 0.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain TerY_C PF15616.6 gi|284164334|ref|YP_003402613.1| - 0.049 13.7 0.1 0.05 13.7 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain OrfB_Zn_ribbon PF07282.11 gi|284164334|ref|YP_003402613.1| - 0.05 13.5 1.2 0.076 13.0 1.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|284164334|ref|YP_003402613.1| - 0.05 13.6 0.2 0.075 13.0 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-LYAR PF08790.11 gi|284164334|ref|YP_003402613.1| - 0.06 13.3 1.5 0.1 12.5 1.5 1.3 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger zf-trcl PF13451.6 gi|284164334|ref|YP_003402613.1| - 0.32 10.9 4.1 0.27 11.1 0.5 2.1 1 1 1 2 2 2 0 Probable zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|284164334|ref|YP_003402613.1| - 0.54 9.8 4.5 4.9 6.8 0.4 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|284164334|ref|YP_003402613.1| - 1.1 9.4 7.2 0.54 10.4 2.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2797 PF10977.8 gi|284164336|ref|YP_003402615.1| - 9e-31 107.5 6.3 7.5e-28 98.0 6.3 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) PhoD PF09423.10 gi|284164337|ref|YP_003402616.1| - 2.6e-48 164.8 0.0 4.5e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 PhoD-like phosphatase Laminin_B PF00052.18 gi|284164337|ref|YP_003402616.1| - 3.6e-16 59.3 0.0 7.1e-16 58.3 0.0 1.5 1 0 0 1 1 1 1 Laminin B (Domain IV) PhoD_N PF16655.5 gi|284164337|ref|YP_003402616.1| - 1.7e-11 44.5 1.5 4.4e-11 43.2 1.5 1.7 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Pur_ac_phosph_N PF16656.5 gi|284164337|ref|YP_003402616.1| - 0.0027 18.3 0.9 0.0072 16.9 0.9 1.7 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain CarboxypepD_reg PF13620.6 gi|284164337|ref|YP_003402616.1| - 0.0057 16.9 2.0 1 9.7 0.8 2.7 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain BsuPI PF12690.7 gi|284164338|ref|YP_003402617.1| - 1.1e-34 118.5 0.1 1.2e-34 118.3 0.1 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor Monooxygenase_B PF04744.12 gi|284164338|ref|YP_003402617.1| - 0.0094 14.8 0.0 0.0098 14.8 0.0 1.1 1 0 0 1 1 1 1 Monooxygenase subunit B protein CbiX PF01903.17 gi|284164339|ref|YP_003402618.1| - 7.9e-43 145.2 0.3 1.5e-21 76.7 0.0 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|284164339|ref|YP_003402618.1| - 2.3e-07 30.4 0.2 0.0014 18.0 0.2 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) LTV PF04180.14 gi|284164339|ref|YP_003402618.1| - 0.026 14.3 0.1 0.064 13.0 0.0 1.5 1 1 1 2 2 2 0 Low temperature viability protein YflT PF11181.8 gi|284164339|ref|YP_003402618.1| - 0.031 14.8 0.2 8.5 7.0 0.1 2.6 2 1 0 2 2 2 0 Heat induced stress protein YflT Branch PF02485.21 gi|284164339|ref|YP_003402618.1| - 0.14 11.6 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 Core-2/I-Branching enzyme DR2241 PF18069.1 gi|284164340|ref|YP_003402619.1| - 1.3e-44 150.6 0.4 1.3e-44 150.6 0.4 2.7 4 0 0 4 4 4 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|284164340|ref|YP_003402619.1| - 5e-32 110.2 0.4 1.1e-31 109.0 0.4 1.6 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Trm112p PF03966.16 gi|284164342|ref|YP_003402621.1| - 3.7e-11 43.4 1.0 5.3e-11 42.9 1.0 1.3 1 0 0 1 1 1 1 Trm112p-like protein Adenylsucc_synt PF00709.21 gi|284164343|ref|YP_003402622.1| - 4.2e-153 510.2 0.1 4.9e-153 510.0 0.1 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_12 PF08461.10 gi|284164344|ref|YP_003402623.1| - 0.0085 16.0 0.1 0.016 15.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|284164344|ref|YP_003402623.1| - 0.012 15.1 0.4 0.021 14.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284164344|ref|YP_003402623.1| - 0.024 14.5 0.1 0.056 13.3 0.1 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|284164344|ref|YP_003402623.1| - 0.026 14.4 0.0 0.05 13.5 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.19 gi|284164344|ref|YP_003402623.1| - 0.028 14.3 0.1 0.046 13.6 0.1 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|284164344|ref|YP_003402623.1| - 0.13 12.3 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) CLZ PF16526.5 gi|284164344|ref|YP_003402623.1| - 0.53 10.7 5.5 3.9 7.9 0.8 2.1 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3450 PF11932.8 gi|284164345|ref|YP_003402624.1| - 1.2e-05 24.7 6.2 1.2e-05 24.7 6.2 2.3 1 1 1 2 2 1 1 Protein of unknown function (DUF3450) JIP_LZII PF16471.5 gi|284164345|ref|YP_003402624.1| - 0.00044 20.4 10.7 0.00086 19.4 10.7 1.5 1 0 0 1 1 1 1 JNK-interacting protein leucine zipper II YabA PF06156.13 gi|284164345|ref|YP_003402624.1| - 0.0011 19.6 2.4 0.01 16.4 2.8 2.3 2 0 0 2 2 2 1 Initiation control protein YabA DUF2205 PF10224.9 gi|284164345|ref|YP_003402624.1| - 0.0019 18.1 1.9 0.0046 16.9 1.9 1.6 1 0 0 1 1 1 1 Short coiled-coil protein Spc7 PF08317.11 gi|284164345|ref|YP_003402624.1| - 0.0085 15.0 5.9 0.019 13.9 5.9 1.5 1 0 0 1 1 1 1 Spc7 kinetochore protein bZIP_1 PF00170.21 gi|284164345|ref|YP_003402624.1| - 0.016 15.3 2.4 0.016 15.3 2.4 3.0 2 1 1 3 3 2 0 bZIP transcription factor CENP-F_leu_zip PF10473.9 gi|284164345|ref|YP_003402624.1| - 0.019 15.0 10.1 0.043 13.8 10.1 1.5 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Allexi_40kDa PF05549.11 gi|284164345|ref|YP_003402624.1| - 0.032 13.8 0.7 0.077 12.5 0.7 1.6 1 0 0 1 1 1 0 Allexivirus 40kDa protein Cep57_CLD_2 PF14197.6 gi|284164345|ref|YP_003402624.1| - 0.041 14.0 13.1 0.093 12.8 13.1 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF812 PF05667.11 gi|284164345|ref|YP_003402624.1| - 0.047 12.6 19.7 0.066 12.1 19.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Cortex-I_coil PF09304.10 gi|284164345|ref|YP_003402624.1| - 0.051 13.8 8.4 0.13 12.5 8.4 1.6 1 0 0 1 1 1 0 Cortexillin I, coiled coil TMPIT PF07851.13 gi|284164345|ref|YP_003402624.1| - 0.053 12.8 1.0 0.09 12.0 1.0 1.3 1 0 0 1 1 1 0 TMPIT-like protein DUF1664 PF07889.12 gi|284164345|ref|YP_003402624.1| - 0.061 13.4 1.5 0.13 12.3 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Herpes_UL6 PF01763.16 gi|284164345|ref|YP_003402624.1| - 0.095 11.2 0.5 0.15 10.5 0.5 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like DegS PF05384.11 gi|284164345|ref|YP_003402624.1| - 0.23 11.0 6.4 0.46 10.0 6.4 1.4 1 0 0 1 1 1 0 Sensor protein DegS TMCO5 PF14992.6 gi|284164345|ref|YP_003402624.1| - 0.26 10.8 4.4 0.47 10.0 4.4 1.3 1 0 0 1 1 1 0 TMCO5 family HSBP1 PF06825.12 gi|284164345|ref|YP_003402624.1| - 0.3 11.0 3.0 2.1 8.2 0.8 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Cnn_1N PF07989.11 gi|284164345|ref|YP_003402624.1| - 0.32 11.2 7.1 0.82 9.9 7.1 1.7 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 DUF4094 PF13334.6 gi|284164345|ref|YP_003402624.1| - 0.35 11.3 2.8 1.1 9.8 2.8 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) AAA_23 PF13476.6 gi|284164345|ref|YP_003402624.1| - 0.36 11.3 6.3 0.6 10.6 6.3 1.3 1 0 0 1 1 1 0 AAA domain Pox_A_type_inc PF04508.12 gi|284164345|ref|YP_003402624.1| - 0.45 10.4 10.8 0.025 14.4 4.2 2.3 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DUF2884 PF11101.8 gi|284164345|ref|YP_003402624.1| - 0.53 9.7 4.5 0.98 8.9 4.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) HALZ PF02183.18 gi|284164345|ref|YP_003402624.1| - 0.56 10.5 2.7 1.4 9.2 2.4 1.8 1 1 0 1 1 1 0 Homeobox associated leucine zipper DUF5082 PF16888.5 gi|284164345|ref|YP_003402624.1| - 0.62 10.3 5.4 1.2 9.4 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Prefoldin PF02996.17 gi|284164345|ref|YP_003402624.1| - 0.84 9.6 7.9 6 6.8 0.8 2.5 1 1 1 2 2 2 0 Prefoldin subunit PHM7_cyt PF14703.6 gi|284164345|ref|YP_003402624.1| - 1.2 9.3 4.1 3.1 8.0 2.7 2.1 1 1 1 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter Prefoldin_2 PF01920.20 gi|284164345|ref|YP_003402624.1| - 1.5 8.8 10.8 5.9 6.9 3.9 2.6 1 1 1 2 2 2 0 Prefoldin subunit TMF_DNA_bd PF12329.8 gi|284164345|ref|YP_003402624.1| - 1.6 8.8 12.1 13 5.9 12.1 2.3 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Tmemb_cc2 PF10267.9 gi|284164345|ref|YP_003402624.1| - 1.9 7.5 21.7 0.03 13.5 13.6 1.9 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein FlaC_arch PF05377.11 gi|284164345|ref|YP_003402624.1| - 2.5 8.6 5.9 19 5.7 5.0 2.6 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) SHE3 PF17078.5 gi|284164345|ref|YP_003402624.1| - 2.6 7.7 5.8 7.9 6.1 5.8 1.7 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 Fmp27_WPPW PF10359.9 gi|284164345|ref|YP_003402624.1| - 3.4 6.4 13.3 0.0074 15.2 3.0 1.7 2 0 0 2 2 1 0 RNA pol II promoter Fmp27 protein domain Macoilin PF09726.9 gi|284164345|ref|YP_003402624.1| - 4 5.9 15.7 6.2 5.2 15.7 1.2 1 0 0 1 1 1 0 Macoilin family CLZ PF16526.5 gi|284164345|ref|YP_003402624.1| - 6.5 7.2 9.6 70 3.9 8.6 2.7 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Atg14 PF10186.9 gi|284164345|ref|YP_003402624.1| - 8.3 5.4 14.4 0.029 13.4 2.5 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 XhlA PF10779.9 gi|284164345|ref|YP_003402624.1| - 10 6.4 7.3 15 5.9 4.7 2.5 1 1 1 2 2 2 0 Haemolysin XhlA UPF0058 PF01893.16 gi|284164346|ref|YP_003402625.1| - 3.6e-34 116.9 0.8 4e-34 116.8 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Ada3 PF10198.9 gi|284164346|ref|YP_003402625.1| - 0.0056 16.8 0.0 0.0063 16.7 0.0 1.1 1 0 0 1 1 1 1 Histone acetyltransferases subunit 3 DUF998 PF06197.13 gi|284164347|ref|YP_003402626.1| - 1.7e-12 47.3 33.9 2.2e-12 46.9 33.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF4229 PF14012.6 gi|284164347|ref|YP_003402626.1| - 2.3 8.4 11.9 0.91 9.7 0.6 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) ABC_tran PF00005.27 gi|284164348|ref|YP_003402627.1| - 1.9e-34 119.1 0.0 2.9e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|284164348|ref|YP_003402627.1| - 5.7e-12 45.6 2.2 1.9e-11 44.0 0.7 2.5 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|284164348|ref|YP_003402627.1| - 5.1e-06 26.5 0.3 0.032 14.1 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|284164348|ref|YP_003402627.1| - 0.00042 20.3 0.1 0.00082 19.3 0.1 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|284164348|ref|YP_003402627.1| - 0.00069 20.0 0.6 0.0017 18.8 0.4 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284164348|ref|YP_003402627.1| - 0.0013 19.0 0.3 0.0058 16.9 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284164348|ref|YP_003402627.1| - 0.0098 16.3 0.0 0.037 14.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|284164348|ref|YP_003402627.1| - 0.034 14.0 0.1 0.093 12.6 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase SbcCD_C PF13558.6 gi|284164348|ref|YP_003402627.1| - 0.047 13.9 0.8 0.3 11.3 0.8 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.20 gi|284164348|ref|YP_003402627.1| - 0.088 11.9 0.0 0.2 10.8 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|284164348|ref|YP_003402627.1| - 0.12 12.5 0.3 0.46 10.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|284164348|ref|YP_003402627.1| - 0.21 11.6 0.0 0.43 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|284164350|ref|YP_003402629.1| - 3.3e-49 167.4 0.0 4.7e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein T2SSF PF00482.23 gi|284164351|ref|YP_003402630.1| - 2.6e-38 130.8 9.5 7.8e-20 71.1 3.7 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|284164351|ref|YP_003402630.1| - 0.028 13.2 0.1 0.6 8.8 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Methyltransf_11 PF08241.12 gi|284164352|ref|YP_003402631.1| - 7.4e-20 71.4 0.1 1.3e-19 70.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164352|ref|YP_003402631.1| - 1.2e-19 70.8 0.1 3.1e-19 69.5 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164352|ref|YP_003402631.1| - 1.4e-12 47.7 0.0 1.8e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164352|ref|YP_003402631.1| - 5.2e-11 43.2 0.0 1.1e-10 42.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164352|ref|YP_003402631.1| - 9.5e-08 31.7 0.0 1.2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284164352|ref|YP_003402631.1| - 1.4e-07 31.5 0.0 1.9e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|284164352|ref|YP_003402631.1| - 8e-05 22.6 0.0 0.00049 20.0 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|284164352|ref|YP_003402631.1| - 0.033 13.8 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PSII_BNR PF14870.6 gi|284164353|ref|YP_003402632.1| - 1.7e-05 24.3 8.0 0.11 11.7 0.2 3.4 1 1 2 3 3 3 3 Photosynthesis system II assembly factor YCF48 Sortilin-Vps10 PF15902.5 gi|284164353|ref|YP_003402632.1| - 0.16 10.8 0.4 0.23 10.2 0.4 1.2 1 0 0 1 1 1 0 Sortilin, neurotensin receptor 3, Tubulin_2 PF13809.6 gi|284164354|ref|YP_003402633.1| - 1.8e-13 50.4 0.1 6.9e-13 48.5 0.0 1.9 2 0 0 2 2 2 1 Tubulin like Tubulin PF00091.25 gi|284164354|ref|YP_003402633.1| - 4e-08 33.7 0.0 6.5e-07 29.7 0.0 2.6 2 0 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Baculo_PEP_C PF04513.12 gi|284164354|ref|YP_003402633.1| - 0.0028 17.7 0.8 0.0028 17.7 0.8 3.9 3 1 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|284164354|ref|YP_003402633.1| - 0.017 14.1 38.1 0.044 12.7 16.0 4.4 4 0 0 4 4 4 0 Spc7 kinetochore protein Fzo_mitofusin PF04799.13 gi|284164354|ref|YP_003402633.1| - 0.058 12.9 18.2 0.29 10.7 2.9 4.2 3 1 1 4 4 4 0 fzo-like conserved region DUF2894 PF11445.8 gi|284164354|ref|YP_003402633.1| - 0.45 11.0 4.0 64 3.9 0.0 3.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2894) Laminin_II PF06009.12 gi|284164354|ref|YP_003402633.1| - 1.5 8.8 18.9 4.4 7.3 4.5 4.9 3 1 2 5 5 5 0 Laminin Domain II FlxA PF14282.6 gi|284164354|ref|YP_003402633.1| - 2.1 8.4 12.4 1.7 8.7 1.2 3.6 2 1 1 3 3 3 0 FlxA-like protein Phage_GP20 PF06810.11 gi|284164354|ref|YP_003402633.1| - 3.6 7.4 25.5 0.13 12.1 4.8 3.9 2 1 0 3 3 3 0 Phage minor structural protein GP20 FapA PF03961.13 gi|284164354|ref|YP_003402633.1| - 4.8 5.7 19.0 0.37 9.3 0.4 3.8 3 1 1 4 4 4 0 Flagellar Assembly Protein A CK2S PF15011.6 gi|284164354|ref|YP_003402633.1| - 7.1 6.5 8.1 2.5 8.0 4.1 2.5 2 1 0 2 2 2 0 Casein Kinase 2 substrate TPR_MLP1_2 PF07926.12 gi|284164354|ref|YP_003402633.1| - 7.8 6.6 36.9 0.85 9.7 3.5 5.3 4 1 1 5 5 5 0 TPR/MLP1/MLP2-like protein AAA_16 PF13191.6 gi|284164355|ref|YP_003402634.1| - 0.025 15.0 0.1 0.054 13.9 0.1 1.7 1 1 1 2 2 2 0 AAA ATPase domain DEAD PF00270.29 gi|284164355|ref|YP_003402634.1| - 0.034 13.9 0.0 0.083 12.7 0.0 1.6 2 0 0 2 2 2 0 DEAD/DEAH box helicase SpoIIM PF01944.17 gi|284164355|ref|YP_003402634.1| - 0.36 10.8 13.2 1.1 9.3 13.2 1.9 1 1 0 1 1 1 0 Stage II sporulation protein M fn3 PF00041.21 gi|284164356|ref|YP_003402635.1| - 0.00011 22.5 0.5 3 8.3 0.1 4.2 4 0 0 4 4 4 2 Fibronectin type III domain Hydrolase_like PF13242.6 gi|284164356|ref|YP_003402635.1| - 0.0015 18.5 0.1 26 5.0 0.0 3.9 4 0 0 4 4 4 0 HAD-hyrolase-like DUF1541 PF07563.11 gi|284164356|ref|YP_003402635.1| - 0.0093 15.8 0.3 7.8 6.5 0.0 3.4 3 0 0 3 3 3 1 Protein of unknown function (DUF1541) TPP1 PF10341.9 gi|284164356|ref|YP_003402635.1| - 0.037 14.0 0.3 39 4.3 0.0 3.3 3 0 0 3 3 3 0 Shelterin complex subunit, TPP1/ACD Big_3_5 PF16640.5 gi|284164356|ref|YP_003402635.1| - 0.044 14.0 13.4 6.3 7.1 0.7 4.6 4 1 1 5 5 5 0 Bacterial Ig-like domain (group 3) Pur_ac_phosph_N PF16656.5 gi|284164356|ref|YP_003402635.1| - 0.06 13.9 4.5 16 6.1 0.1 4.4 5 0 0 5 5 5 0 Purple acid Phosphatase, N-terminal domain YDG PF18657.1 gi|284164356|ref|YP_003402635.1| - 0.063 13.5 13.2 2 8.6 0.6 4.4 4 0 0 4 4 4 0 YDG domain Invasin_D3 PF09134.10 gi|284164356|ref|YP_003402635.1| - 0.44 10.9 17.3 0.48 10.8 1.4 4.4 4 0 0 4 4 4 0 Invasin, domain 3 Na_H_antiporter PF03553.14 gi|284164357|ref|YP_003402636.1| - 2.9e-60 204.1 26.6 2.9e-60 204.1 26.6 2.7 1 1 2 3 3 3 1 Na+/H+ antiporter family Aminotran_3 PF00202.21 gi|284164358|ref|YP_003402637.1| - 7.5e-84 281.7 0.0 1.8e-83 280.4 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-III Arginase PF00491.21 gi|284164359|ref|YP_003402638.1| - 3.4e-75 253.1 4.4 4e-75 252.9 4.4 1.0 1 0 0 1 1 1 1 Arginase family ELFV_dehydrog PF00208.21 gi|284164360|ref|YP_003402639.1| - 2.6e-69 233.6 0.0 3.5e-69 233.2 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|284164360|ref|YP_003402639.1| - 2.2e-54 182.8 0.0 4.1e-54 181.9 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|284164360|ref|YP_003402639.1| - 0.00055 19.3 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284164360|ref|YP_003402639.1| - 0.047 13.3 0.0 0.089 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Bac_GDH PF05088.12 gi|284164360|ref|YP_003402639.1| - 0.055 11.0 0.1 0.1 10.0 0.0 1.4 2 0 0 2 2 2 0 Bacterial NAD-glutamate dehydrogenase TUG-UBL1 PF11470.8 gi|284164360|ref|YP_003402639.1| - 0.073 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 TUG ubiquitin-like domain NAD_binding_7 PF13241.6 gi|284164360|ref|YP_003402639.1| - 0.14 12.6 0.3 0.37 11.3 0.3 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|284164360|ref|YP_003402639.1| - 0.34 10.2 1.7 2.6 7.3 0.1 2.7 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain IclR PF01614.18 gi|284164361|ref|YP_003402640.1| - 1.6e-33 115.3 0.0 2.4e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284164361|ref|YP_003402640.1| - 2e-08 33.9 0.0 4e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284164361|ref|YP_003402640.1| - 0.0092 15.8 0.3 0.018 14.9 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284164361|ref|YP_003402640.1| - 0.029 13.9 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rio2_N PF09202.11 gi|284164361|ref|YP_003402640.1| - 0.046 13.9 0.0 0.14 12.4 0.0 1.8 1 0 0 1 1 1 0 Rio2, N-terminal DUF1803 PF08820.10 gi|284164361|ref|YP_003402640.1| - 0.063 13.3 0.4 0.34 11.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) HTH_45 PF14947.6 gi|284164361|ref|YP_003402640.1| - 0.093 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_11 PF08279.12 gi|284164361|ref|YP_003402640.1| - 0.1 12.5 0.1 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 HTH domain Radical_SAM PF04055.21 gi|284164362|ref|YP_003402641.1| - 4.9e-11 43.3 0.8 3.2e-09 37.4 0.8 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|284164362|ref|YP_003402641.1| - 2.4e-05 24.6 0.0 5.1e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|284164362|ref|YP_003402641.1| - 0.002 18.2 0.0 0.0055 16.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DICT PF10069.9 gi|284164363|ref|YP_003402642.1| - 0.00012 21.9 0.0 0.00018 21.3 0.0 1.3 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system RAM PF15320.6 gi|284164363|ref|YP_003402642.1| - 0.05 14.2 0.0 0.097 13.3 0.0 1.6 1 0 0 1 1 1 0 mRNA cap methylation, RNMT-activating mini protein Acetyltransf_1 PF00583.25 gi|284164365|ref|YP_003402644.1| - 1.6e-09 38.0 0.0 2.7e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284164365|ref|YP_003402644.1| - 2.5e-05 24.2 0.0 3.7e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284164365|ref|YP_003402644.1| - 0.0006 19.9 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|284164365|ref|YP_003402644.1| - 0.0026 18.1 0.0 0.0049 17.3 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284164365|ref|YP_003402644.1| - 0.015 15.4 0.1 0.036 14.1 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain MEDS PF14417.6 gi|284164366|ref|YP_003402645.1| - 3.5e-53 179.7 2.5 1.2e-52 178.0 2.5 2.0 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|284164366|ref|YP_003402645.1| - 6.3e-30 104.0 0.0 1.7e-29 102.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|284164366|ref|YP_003402645.1| - 6.3e-16 58.9 0.0 0.01 16.2 0.0 5.3 4 1 0 4 4 4 4 GAF domain GAF PF01590.26 gi|284164366|ref|YP_003402645.1| - 4.7e-13 49.9 0.0 3.5e-05 24.4 0.0 4.1 4 0 0 4 4 4 2 GAF domain GAF_2 PF13185.6 gi|284164366|ref|YP_003402645.1| - 1.4e-12 48.1 4.6 0.00041 20.6 0.0 5.6 6 0 0 6 6 6 2 GAF domain HisKA PF00512.25 gi|284164366|ref|YP_003402645.1| - 7.1e-10 38.8 1.7 2.4e-09 37.1 0.0 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|284164366|ref|YP_003402645.1| - 6.2e-05 22.8 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 GHKL domain ATPase PF06745.13 gi|284164366|ref|YP_003402645.1| - 0.001 18.5 0.0 0.0021 17.4 0.0 1.5 1 0 0 1 1 1 1 KaiC HATPase_c_3 PF13589.6 gi|284164366|ref|YP_003402645.1| - 0.0079 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284164366|ref|YP_003402645.1| - 0.031 14.2 0.1 0.089 12.8 0.1 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain CPSF73-100_C PF11718.8 gi|284164366|ref|YP_003402645.1| - 0.26 10.8 0.0 0.66 9.5 0.0 1.6 2 0 0 2 2 2 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term XPG_I PF00867.18 gi|284164367|ref|YP_003402646.1| - 5.1e-22 78.0 0.0 9.4e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|284164367|ref|YP_003402646.1| - 5.3e-11 42.9 0.0 9.2e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|284164367|ref|YP_003402646.1| - 1.9e-05 25.2 0.0 4.1e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|284164367|ref|YP_003402646.1| - 0.018 14.9 0.0 0.031 14.2 0.0 1.4 1 1 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain DUF1206 PF06724.11 gi|284164368|ref|YP_003402647.1| - 0.61 10.2 15.8 0.74 9.9 3.3 2.5 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) MEDS PF14417.6 gi|284164369|ref|YP_003402648.1| - 8.9e-46 155.7 2.0 2.9e-45 154.0 2.0 2.0 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|284164369|ref|YP_003402648.1| - 8.5e-25 87.4 0.0 9e-24 84.1 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|284164369|ref|YP_003402648.1| - 1.5e-15 57.7 0.0 6.9e-07 29.7 0.0 3.4 3 0 0 3 3 3 2 GAF domain GAF_2 PF13185.6 gi|284164369|ref|YP_003402648.1| - 5.7e-13 49.4 1.4 0.00022 21.5 0.0 4.1 4 0 0 4 4 4 2 GAF domain GAF PF01590.26 gi|284164369|ref|YP_003402648.1| - 1.6e-12 48.2 0.0 2.4e-05 25.0 0.0 3.6 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|284164369|ref|YP_003402648.1| - 5e-12 45.7 0.1 5e-12 45.7 0.1 2.8 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain ATPase PF06745.13 gi|284164369|ref|YP_003402648.1| - 0.17 11.2 0.1 0.47 9.8 0.0 1.7 2 0 0 2 2 2 0 KaiC Pyr_redox_2 PF07992.14 gi|284164370|ref|YP_003402649.1| - 1.3e-33 116.5 0.7 1.7e-33 116.2 0.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284164370|ref|YP_003402649.1| - 1.6e-12 47.8 0.6 2.5e-09 37.6 0.2 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|284164370|ref|YP_003402649.1| - 0.00022 21.3 1.6 0.75 9.8 0.0 3.8 3 1 1 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|284164370|ref|YP_003402649.1| - 0.0019 18.4 0.5 3.8 7.8 0.3 3.0 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|284164370|ref|YP_003402649.1| - 0.069 13.4 0.1 0.26 11.5 0.0 2.1 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain K_oxygenase PF13434.6 gi|284164370|ref|YP_003402649.1| - 0.096 11.8 0.0 0.33 10.0 0.0 1.7 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|284164370|ref|YP_003402649.1| - 0.26 10.3 0.0 0.26 10.3 0.0 3.1 3 1 1 4 4 4 0 Lycopene cyclase protein HalOD1 PF18545.1 gi|284164371|ref|YP_003402650.1| - 7.8e-26 90.1 0.3 9.3e-26 89.9 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_AsnC-type PF13404.6 gi|284164372|ref|YP_003402651.1| - 2.5e-10 40.0 1.3 5.1e-10 39.0 1.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284164372|ref|YP_003402651.1| - 1.1e-09 37.7 0.0 1.8e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284164372|ref|YP_003402651.1| - 0.00034 20.4 0.1 0.00055 19.8 0.1 1.5 1 0 0 1 1 1 1 MarR family P2 PF07194.11 gi|284164372|ref|YP_003402651.1| - 0.0056 16.7 1.2 0.045 13.8 0.0 2.1 1 1 1 2 2 2 1 P2 response regulator binding domain HTH_20 PF12840.7 gi|284164372|ref|YP_003402651.1| - 0.0071 16.4 0.6 0.014 15.4 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284164372|ref|YP_003402651.1| - 0.014 15.8 0.3 0.051 14.1 0.0 2.0 2 1 1 3 3 3 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|284164372|ref|YP_003402651.1| - 0.018 14.8 0.3 0.038 13.8 0.1 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164372|ref|YP_003402651.1| - 0.036 14.0 0.0 0.089 12.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain WIYLD PF10440.9 gi|284164372|ref|YP_003402651.1| - 0.054 13.3 0.0 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Ubiquitin-binding WIYLD domain TrmB PF01978.19 gi|284164372|ref|YP_003402651.1| - 0.14 12.0 0.1 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MDD_C PF18376.1 gi|284164373|ref|YP_003402652.1| - 1.6e-07 31.2 0.0 2.7e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|284164373|ref|YP_003402652.1| - 2.6e-05 24.4 5.7 0.00012 22.2 5.7 2.1 1 1 0 1 1 1 1 GHMP kinases N terminal domain TarH PF02203.15 gi|284164373|ref|YP_003402652.1| - 0.0094 15.9 0.9 0.0094 15.9 0.9 2.0 2 0 0 2 2 2 1 Tar ligand binding domain homologue DUF4349 PF14257.6 gi|284164374|ref|YP_003402653.1| - 0.0003 20.3 3.8 0.00039 19.9 3.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) FliT PF05400.13 gi|284164374|ref|YP_003402653.1| - 0.0019 19.0 5.4 0.0028 18.4 0.4 2.2 2 0 0 2 2 2 1 Flagellar protein FliT HrpB7 PF09486.10 gi|284164374|ref|YP_003402653.1| - 0.043 14.2 6.0 0.059 13.8 6.0 1.2 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) ApoLp-III PF07464.11 gi|284164374|ref|YP_003402653.1| - 0.048 13.7 0.2 0.1 12.7 0.2 1.6 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Ku_C PF03730.14 gi|284164374|ref|YP_003402653.1| - 0.057 14.1 1.2 1.3 9.8 0.5 2.3 1 1 1 2 2 2 0 Ku70/Ku80 C-terminal arm FUSC PF04632.12 gi|284164374|ref|YP_003402653.1| - 1.6 7.2 5.3 1.8 7.0 5.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family HhH-GPD PF00730.25 gi|284164375|ref|YP_003402654.1| - 3e-22 79.1 0.0 4.8e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|284164375|ref|YP_003402654.1| - 1.4e-09 37.3 0.0 3.3e-09 36.2 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|284164375|ref|YP_003402654.1| - 1.3e-07 31.8 4.5 2.1e-07 31.0 4.5 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III LPD29 PF18847.1 gi|284164375|ref|YP_003402654.1| - 0.00082 20.3 0.0 0.0013 19.6 0.0 1.3 1 0 0 1 1 1 1 Large polyvalent protein associated domain 29 HHH_5 PF14520.6 gi|284164375|ref|YP_003402654.1| - 0.0058 17.2 0.0 0.015 15.9 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|284164375|ref|YP_003402654.1| - 0.018 15.7 0.0 0.037 14.6 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 gi|284164375|ref|YP_003402654.1| - 0.1 12.6 0.0 0.25 11.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) SPW PF03779.14 gi|284164377|ref|YP_003402656.1| - 3.5e-08 32.9 12.5 1.3e-05 24.7 0.4 2.4 2 0 0 2 2 2 2 SPW repeat YfhO PF09586.10 gi|284164377|ref|YP_003402656.1| - 0.081 11.2 0.1 0.093 10.9 0.1 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO SLATT_5 PF18160.1 gi|284164377|ref|YP_003402656.1| - 0.14 11.4 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 NAD_kinase PF01513.21 gi|284164378|ref|YP_003402657.1| - 2.6e-13 49.8 1.3 3.4e-13 49.4 1.3 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Peptidase_M28 PF04389.17 gi|284164379|ref|YP_003402658.1| - 7.1e-33 114.0 0.9 1e-32 113.5 0.9 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|284164379|ref|YP_003402658.1| - 1.8e-16 59.9 0.1 5.1e-16 58.5 0.0 1.8 2 0 0 2 2 2 1 PA domain Peptidase_M20 PF01546.28 gi|284164379|ref|YP_003402658.1| - 3.6e-05 23.5 0.3 6.5e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|284164379|ref|YP_003402658.1| - 9.2e-05 21.6 1.1 0.0002 20.5 0.6 1.6 1 1 0 1 1 1 1 M42 glutamyl aminopeptidase Cyt_c_ox_IV PF12270.8 gi|284164381|ref|YP_003402660.1| - 0.014 15.5 2.8 0.045 13.9 0.1 2.2 2 1 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF3007 PF11460.8 gi|284164382|ref|YP_003402661.1| - 0.00026 21.2 0.1 0.00031 20.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3007) MWFE PF15879.5 gi|284164382|ref|YP_003402661.1| - 0.11 12.6 0.6 8.3 6.7 0.0 2.1 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase MWFE subunit ACR_tran PF00873.19 gi|284164382|ref|YP_003402661.1| - 0.29 8.8 2.4 1.6 6.2 2.5 1.8 1 1 0 1 1 1 0 AcrB/AcrD/AcrF family CTV_P6 PF06706.11 gi|284164383|ref|YP_003402662.1| - 0.48 10.2 3.5 0.6 9.9 3.5 1.1 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein AMP-binding PF00501.28 gi|284164385|ref|YP_003402664.1| - 8.3e-89 298.1 0.1 1e-88 297.8 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164385|ref|YP_003402664.1| - 3e-24 85.8 0.8 6.3e-24 84.8 0.8 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|284164385|ref|YP_003402664.1| - 2.4e-13 49.8 2.2 2.4e-13 49.8 2.2 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus MM_CoA_mutase PF01642.22 gi|284164388|ref|YP_003402667.1| - 1.8e-213 709.8 0.1 2.1e-213 709.6 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|284164388|ref|YP_003402667.1| - 0.012 14.1 0.1 0.024 13.1 0.1 1.4 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) Paramyxo_P PF01806.17 gi|284164388|ref|YP_003402667.1| - 0.048 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Paramyxovirinae P phosphoprotein C-terminal region zinc_ribbon_5 PF13719.6 gi|284164389|ref|YP_003402668.1| - 0.0039 16.9 0.2 0.0039 16.9 0.2 1.9 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_12 PF11331.8 gi|284164389|ref|YP_003402668.1| - 0.079 12.8 0.1 0.079 12.8 0.1 1.5 2 0 0 2 2 2 0 Probable zinc-ribbon domain SpoIIAA-like PF11964.8 gi|284164390|ref|YP_003402669.1| - 0.12 13.5 0.8 0.27 12.3 0.8 1.7 1 1 0 1 1 1 0 SpoIIAA-like CBS PF00571.28 gi|284164391|ref|YP_003402670.1| - 5.7e-25 87.5 2.0 3e-11 43.6 0.1 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|284164391|ref|YP_003402670.1| - 1.5e-09 38.0 0.0 3.9e-09 36.7 0.0 1.7 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|284164391|ref|YP_003402670.1| - 0.012 15.8 0.0 0.088 12.9 0.0 2.1 1 1 0 1 1 1 0 Putative ParB-like nuclease DHHA1 PF02272.19 gi|284164392|ref|YP_003402671.1| - 3.5e-14 53.4 0.5 8.8e-14 52.1 0.5 1.7 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.18 gi|284164392|ref|YP_003402671.1| - 1.7e-12 47.6 0.0 4.4e-12 46.3 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|284164392|ref|YP_003402671.1| - 4.7e-12 46.0 0.0 1e-11 44.9 0.0 1.6 1 0 0 1 1 1 1 DHH family Proton_antipo_M PF00361.20 gi|284164393|ref|YP_003402672.1| - 5.3e-68 229.4 19.5 5.3e-68 229.4 19.5 1.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|284164393|ref|YP_003402672.1| - 6.6e-05 22.9 4.3 0.00047 20.2 4.3 2.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lig_chan PF00060.26 gi|284164393|ref|YP_003402672.1| - 0.29 11.0 1.7 0.45 10.3 0.1 2.2 2 0 0 2 2 2 0 Ligand-gated ion channel SPT_ssu-like PF11779.8 gi|284164393|ref|YP_003402672.1| - 0.75 9.5 3.1 4.5 7.0 0.7 3.2 2 0 0 2 2 2 0 Small subunit of serine palmitoyltransferase-like Proton_antipo_M PF00361.20 gi|284164394|ref|YP_003402673.1| - 3.9e-72 242.9 25.1 7.7e-72 242.0 25.1 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|284164394|ref|YP_003402673.1| - 0.00015 21.8 0.3 0.00015 21.8 0.3 3.3 4 1 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_N PF00662.20 gi|284164394|ref|YP_003402673.1| - 0.037 14.1 0.4 0.037 14.1 0.4 2.9 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF3094 PF11293.8 gi|284164394|ref|YP_003402673.1| - 0.98 9.2 0.0 0.98 9.2 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3094) Proton_antipo_M PF00361.20 gi|284164395|ref|YP_003402674.1| - 1.1e-75 254.6 20.1 2.3e-75 253.6 20.1 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|284164395|ref|YP_003402674.1| - 8.1e-16 57.9 0.1 8.1e-16 57.9 0.1 3.0 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|284164395|ref|YP_003402674.1| - 0.0009 18.9 0.0 0.0081 15.8 0.0 2.6 2 0 0 2 2 2 1 NADH dehydrogenase subunit 5 C-terminus DUF5310 PF17237.2 gi|284164395|ref|YP_003402674.1| - 0.0076 16.1 0.1 0.039 13.8 0.1 2.3 1 0 0 1 1 1 1 Family of unknown function (DUF5310) Proton_antipo_C PF01010.19 gi|284164395|ref|YP_003402674.1| - 0.032 13.9 0.0 0.091 12.4 0.0 1.7 1 1 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Oxidored_q2 PF00420.24 gi|284164396|ref|YP_003402675.1| - 5.8e-22 77.3 9.9 7.1e-22 77.0 9.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.16 gi|284164396|ref|YP_003402675.1| - 0.025 13.9 4.9 0.027 13.8 4.9 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein PEP-CTERM PF07589.11 gi|284164396|ref|YP_003402675.1| - 5.6 7.2 10.4 0.84 9.8 0.5 3.3 2 1 0 2 2 2 0 PEP-CTERM motif Oxidored_q3 PF00499.20 gi|284164398|ref|YP_003402677.1| - 1.1e-20 73.8 4.7 1.7e-20 73.2 4.7 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2530 PF10745.9 gi|284164398|ref|YP_003402677.1| - 0.11 12.8 5.7 0.1 12.8 4.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) DUF4040 PF13244.6 gi|284164398|ref|YP_003402677.1| - 0.19 11.9 14.6 0.16 12.2 13.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) DUF4191 PF13829.6 gi|284164398|ref|YP_003402677.1| - 0.51 9.6 5.3 0.68 9.2 5.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF3742 PF12553.8 gi|284164398|ref|YP_003402677.1| - 2.2 8.4 8.1 47 4.1 8.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3742) Phage_holin_3_6 PF07332.11 gi|284164398|ref|YP_003402677.1| - 7.7 6.6 22.0 5.5e+02 0.6 22.0 2.0 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Fer4 PF00037.27 gi|284164399|ref|YP_003402678.1| - 4.4e-12 45.3 9.5 3e-06 26.8 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|284164399|ref|YP_003402678.1| - 6.7e-12 45.8 10.9 1.1e-11 45.2 10.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284164399|ref|YP_003402678.1| - 1.4e-10 42.0 3.6 1.4e-05 25.9 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|284164399|ref|YP_003402678.1| - 5.8e-10 39.2 8.7 8.6e-10 38.6 8.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284164399|ref|YP_003402678.1| - 1.4e-08 34.7 22.8 1.1e-06 28.6 12.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284164399|ref|YP_003402678.1| - 1.3e-06 28.4 19.9 1.2e-05 25.3 11.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284164399|ref|YP_003402678.1| - 6e-06 26.4 8.6 0.00087 19.6 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|284164399|ref|YP_003402678.1| - 1.5e-05 25.4 12.2 0.007 16.9 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284164399|ref|YP_003402678.1| - 2.9e-05 24.0 13.6 0.0059 16.6 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284164399|ref|YP_003402678.1| - 7.4e-05 23.1 12.1 0.0008 19.8 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284164399|ref|YP_003402678.1| - 9.6e-05 22.3 12.5 0.0022 18.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|284164399|ref|YP_003402678.1| - 0.0011 19.8 15.8 0.017 16.0 4.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284164399|ref|YP_003402678.1| - 0.0046 17.1 10.1 0.18 12.0 1.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|284164399|ref|YP_003402678.1| - 0.12 12.5 8.4 0.56 10.4 8.5 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|284164399|ref|YP_003402678.1| - 0.3 11.7 11.4 0.41 11.2 1.1 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TNFR_c6 PF00020.18 gi|284164399|ref|YP_003402678.1| - 0.31 11.5 7.5 5.9 7.4 1.4 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_22 PF17179.4 gi|284164399|ref|YP_003402678.1| - 3.1 8.7 12.0 6.2 7.7 2.6 2.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|284164400|ref|YP_003402679.1| - 5.5e-95 318.1 13.4 6.7e-95 317.8 13.4 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|284164401|ref|YP_003402680.1| - 1e-84 283.9 0.0 2.3e-83 279.4 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|284164401|ref|YP_003402680.1| - 6.2e-34 117.3 0.1 1.1e-33 116.4 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|284164402|ref|YP_003402681.1| - 3.5e-21 75.4 0.1 4.9e-21 74.9 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|284164403|ref|YP_003402682.1| - 2.9e-30 104.3 0.2 3.5e-30 104.1 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AIRC PF00731.20 gi|284164404|ref|YP_003402683.1| - 2.9e-47 159.9 0.0 3.7e-47 159.6 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 gi|284164405|ref|YP_003402684.1| - 5.8e-52 175.7 0.0 8.5e-52 175.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|284164405|ref|YP_003402684.1| - 2.5e-18 65.5 0.0 5.9e-18 64.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|284164405|ref|YP_003402684.1| - 5.1e-07 29.9 0.0 8.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|284164405|ref|YP_003402684.1| - 2.9e-06 27.0 0.0 3.5e-05 23.4 0.0 2.4 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 gi|284164405|ref|YP_003402684.1| - 4.1e-06 26.3 0.0 7.2e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|284164405|ref|YP_003402684.1| - 0.00083 18.9 0.1 0.0013 18.3 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain XdhC_C PF13478.6 gi|284164405|ref|YP_003402684.1| - 0.0027 18.2 0.0 0.0054 17.2 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|284164405|ref|YP_003402684.1| - 0.015 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|284164405|ref|YP_003402684.1| - 0.029 14.9 0.0 0.14 12.7 0.0 2.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Acetyltransf_6 PF13480.7 gi|284164405|ref|YP_003402684.1| - 0.034 14.3 1.4 2.8 8.1 0.1 3.1 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain GARS_A PF01071.19 gi|284164405|ref|YP_003402684.1| - 0.038 13.8 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|284164405|ref|YP_003402684.1| - 0.059 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain DMRL_synthase PF00885.19 gi|284164406|ref|YP_003402685.1| - 2.5e-31 108.4 0.6 3.2e-31 108.0 0.6 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|284164407|ref|YP_003402686.1| - 7.6e-65 219.4 0.0 8.7e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|284164407|ref|YP_003402686.1| - 0.0003 19.4 0.0 0.00043 18.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|284164407|ref|YP_003402686.1| - 0.0037 16.6 0.1 0.0063 15.9 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|284164407|ref|YP_003402686.1| - 0.0052 15.8 0.0 0.016 14.2 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|284164407|ref|YP_003402686.1| - 0.036 13.3 0.1 0.088 12.1 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase Aminotran_3 PF00202.21 gi|284164407|ref|YP_003402686.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III HNH PF01844.23 gi|284164408|ref|YP_003402687.1| - 1.6e-07 31.3 7.6 1.6e-07 31.3 7.6 4.0 5 0 0 5 5 5 1 HNH endonuclease DZR PF12773.7 gi|284164408|ref|YP_003402687.1| - 0.0039 17.2 24.4 0.54 10.3 0.9 4.5 2 1 1 3 3 3 2 Double zinc ribbon HypA PF01155.19 gi|284164408|ref|YP_003402687.1| - 0.0095 16.0 20.6 1.5 8.9 0.6 4.6 1 1 3 4 4 4 3 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HNH_2 PF13391.6 gi|284164408|ref|YP_003402687.1| - 0.023 14.8 2.7 0.64 10.2 2.2 2.7 2 1 0 2 2 2 0 HNH endonuclease Zn-ribbon_8 PF09723.10 gi|284164408|ref|YP_003402687.1| - 0.26 11.4 26.9 0.2 11.8 1.4 5.4 5 1 1 6 6 6 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284164408|ref|YP_003402687.1| - 2.2 8.3 20.2 5.4 7.0 1.5 4.3 4 0 0 4 4 4 0 Putative transposase DNA-binding domain FYVE_2 PF02318.16 gi|284164408|ref|YP_003402687.1| - 5.5 7.2 19.5 0.076 13.2 1.9 3.8 2 2 1 3 3 3 0 FYVE-type zinc finger Ribosomal_S14 PF00253.21 gi|284164408|ref|YP_003402687.1| - 8.3 6.3 10.4 1.5 8.6 0.2 3.0 3 0 0 3 3 3 0 Ribosomal protein S14p/S29e C1_1 PF00130.22 gi|284164408|ref|YP_003402687.1| - 8.4 6.4 25.7 0.31 11.0 0.3 4.8 4 2 0 4 4 4 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FYVE PF01363.21 gi|284164408|ref|YP_003402687.1| - 8.5 6.6 29.0 2.7 8.2 0.5 4.8 2 1 0 2 2 2 0 FYVE zinc finger Glycos_transf_2 PF00535.26 gi|284164410|ref|YP_003402689.1| - 1.8e-10 40.9 0.0 2e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284164410|ref|YP_003402689.1| - 8.2e-06 25.9 0.0 9e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|284164410|ref|YP_003402689.1| - 1.1e-05 25.0 0.0 1.4e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Phosphodiest PF01663.22 gi|284164411|ref|YP_003402690.1| - 3e-37 129.1 0.0 2.2e-35 122.9 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|284164411|ref|YP_003402690.1| - 0.02 14.2 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily AMP-binding_C PF13193.6 gi|284164411|ref|YP_003402690.1| - 0.15 13.0 0.1 2.7 9.0 0.0 2.5 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain HTH_10 PF04967.12 gi|284164412|ref|YP_003402691.1| - 1.6e-18 66.2 0.0 2.5e-18 65.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|284164412|ref|YP_003402691.1| - 2.6e-09 36.5 0.0 5.2e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284164412|ref|YP_003402691.1| - 5.2e-07 29.1 0.0 1.1e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|284164412|ref|YP_003402691.1| - 1e-06 28.3 0.1 1.4e-05 24.6 0.1 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 BAT PF15915.5 gi|284164412|ref|YP_003402691.1| - 6.3e-06 26.2 0.6 8.5e-06 25.7 0.6 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|284164412|ref|YP_003402691.1| - 6.6e-06 25.9 0.0 1.8e-05 24.5 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|284164412|ref|YP_003402691.1| - 0.00011 22.2 0.0 0.00024 21.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|284164412|ref|YP_003402691.1| - 0.001 18.9 0.2 0.0024 17.7 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164412|ref|YP_003402691.1| - 0.0033 17.4 0.0 0.014 15.4 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|284164412|ref|YP_003402691.1| - 0.0053 16.7 0.2 0.01 15.7 0.2 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|284164412|ref|YP_003402691.1| - 0.01 15.8 0.0 0.042 13.8 0.0 2.1 1 1 0 1 1 1 0 MarR family Phage_CI_repr PF07022.13 gi|284164412|ref|YP_003402691.1| - 0.013 15.5 0.1 0.049 13.7 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_31 PF13560.6 gi|284164412|ref|YP_003402691.1| - 0.015 15.6 0.0 0.03 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_50 PF18024.1 gi|284164412|ref|YP_003402691.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|284164412|ref|YP_003402691.1| - 0.024 14.6 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|284164412|ref|YP_003402691.1| - 0.032 14.3 0.3 0.091 12.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284164412|ref|YP_003402691.1| - 0.04 14.1 0.0 0.076 13.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain P22_Cro PF14549.6 gi|284164412|ref|YP_003402691.1| - 0.046 13.6 0.0 0.08 12.8 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_5 PF01022.20 gi|284164412|ref|YP_003402691.1| - 0.058 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family YdaS_antitoxin PF15943.5 gi|284164412|ref|YP_003402691.1| - 0.063 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_1 PF00126.27 gi|284164412|ref|YP_003402691.1| - 0.067 13.2 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|284164412|ref|YP_003402691.1| - 0.075 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_19 PF12844.7 gi|284164412|ref|YP_003402691.1| - 0.091 12.8 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Beta_helix PF13229.6 gi|284164413|ref|YP_003402692.1| - 0.00017 21.5 3.4 0.21 11.5 0.1 3.3 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|284164413|ref|YP_003402692.1| - 0.05 13.4 0.6 12 5.6 0.0 3.2 2 2 0 2 2 2 0 Pectate lyase superfamily protein zf-CCCH_2 PF14608.6 gi|284164413|ref|YP_003402692.1| - 0.25 11.9 0.3 0.43 11.1 0.3 1.4 1 0 0 1 1 1 0 RNA-binding, Nab2-type zinc finger Polysacc_synt_C PF14667.6 gi|284164414|ref|YP_003402693.1| - 7.8e-18 64.9 12.0 7.8e-18 64.9 12.0 4.9 3 1 2 6 6 6 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|284164414|ref|YP_003402693.1| - 7.7e-15 55.0 20.1 7.7e-15 55.0 20.1 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|284164414|ref|YP_003402693.1| - 4.4e-14 52.4 13.0 4.4e-14 52.4 13.0 2.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|284164414|ref|YP_003402693.1| - 4.7e-09 35.4 14.1 1.8e-08 33.5 14.3 1.8 1 1 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|284164414|ref|YP_003402693.1| - 5.4e-08 32.7 4.7 5.4e-08 32.7 4.7 4.0 3 1 1 4 4 4 1 MatE DUF2275 PF10039.9 gi|284164414|ref|YP_003402693.1| - 0.48 10.5 0.1 0.48 10.5 0.1 1.9 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2275) Glycos_transf_2 PF00535.26 gi|284164415|ref|YP_003402694.1| - 4e-16 59.3 0.3 8e-09 35.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|284164415|ref|YP_003402694.1| - 0.14 12.7 0.2 0.31 11.6 0.2 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|284164416|ref|YP_003402695.1| - 1.2e-36 126.1 0.1 1.5e-36 125.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284164416|ref|YP_003402695.1| - 3.7e-24 85.9 0.0 5.3e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|284164416|ref|YP_003402695.1| - 2.6e-14 53.4 0.0 3.2e-13 49.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|284164416|ref|YP_003402695.1| - 8.6e-06 26.2 0.1 1.9e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|284164416|ref|YP_003402695.1| - 0.00064 19.7 0.0 0.001 19.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 ATPgrasp_ST PF14397.6 gi|284164417|ref|YP_003402696.1| - 1.1e-28 100.3 0.0 2e-28 99.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp RimK PF08443.11 gi|284164417|ref|YP_003402696.1| - 0.014 15.0 0.0 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 RimK-like ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|284164417|ref|YP_003402696.1| - 0.014 14.6 0.0 0.7 9.1 0.0 2.3 2 0 0 2 2 2 0 YheC/D like ATP-grasp AstE_AspA PF04952.14 gi|284164418|ref|YP_003402697.1| - 7.2e-13 48.3 0.0 1e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|284164418|ref|YP_003402697.1| - 3.6e-08 33.2 0.0 1.6e-06 27.8 0.0 2.1 2 0 0 2 2 2 1 Carboxypeptidase controlling helical cell shape catalytic PKD PF00801.20 gi|284164418|ref|YP_003402697.1| - 0.00025 20.8 0.3 0.00076 19.3 0.3 1.9 1 0 0 1 1 1 1 PKD domain Peptidase_M14 PF00246.24 gi|284164418|ref|YP_003402697.1| - 0.056 13.2 0.1 7.2 6.3 0.1 2.7 3 0 0 3 3 3 0 Zinc carboxypeptidase CobT PF06213.12 gi|284164418|ref|YP_003402697.1| - 0.11 11.9 9.1 0.18 11.2 9.1 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT CytB6-F_Fe-S PF08802.10 gi|284164418|ref|YP_003402697.1| - 0.17 11.9 0.8 0.44 10.6 0.8 1.7 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Nop14 PF04147.12 gi|284164418|ref|YP_003402697.1| - 0.85 7.8 8.0 1 7.5 8.0 1.0 1 0 0 1 1 1 0 Nop14-like family SDA1 PF05285.12 gi|284164418|ref|YP_003402697.1| - 1.4 8.3 7.5 2 7.8 7.5 1.2 1 0 0 1 1 1 0 SDA1 Pes-10 PF07149.11 gi|284164418|ref|YP_003402697.1| - 4.8 6.1 8.3 6.7 5.7 8.3 1.1 1 0 0 1 1 1 0 Pes-10 DNA_pol_phi PF04931.13 gi|284164418|ref|YP_003402697.1| - 5.6 4.9 15.7 7.3 4.5 15.7 1.1 1 0 0 1 1 1 0 DNA polymerase phi Polysacc_deac_1 PF01522.21 gi|284164419|ref|YP_003402698.1| - 2.8e-11 43.4 0.3 5.5e-11 42.4 0.3 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|284164419|ref|YP_003402698.1| - 0.0006 19.5 0.3 0.0011 18.7 0.3 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) UCR_Fe-S_N PF10399.9 gi|284164419|ref|YP_003402698.1| - 0.049 13.0 0.5 0.088 12.2 0.5 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Asn_synthase PF00733.21 gi|284164420|ref|YP_003402699.1| - 0.00044 20.0 0.1 0.0062 16.2 0.0 2.1 2 0 0 2 2 2 1 Asparagine synthase Mrr_N PF14338.6 gi|284164422|ref|YP_003402701.1| - 0.017 15.2 1.4 0.53 10.4 0.1 2.2 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_20 PF12840.7 gi|284164422|ref|YP_003402701.1| - 0.067 13.3 0.1 19 5.4 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284164422|ref|YP_003402701.1| - 0.085 12.7 0.1 2 8.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|284164422|ref|YP_003402701.1| - 0.094 12.9 0.0 0.24 11.6 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF1616 PF07760.11 gi|284164423|ref|YP_003402702.1| - 5.5e-85 285.3 2.3 6.3e-85 285.1 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Deltameth_res PF16020.5 gi|284164423|ref|YP_003402702.1| - 0.17 11.8 3.2 1.1 9.1 0.0 2.6 2 0 0 2 2 2 0 Deltamethrin resistance BT1 PF03092.16 gi|284164423|ref|YP_003402702.1| - 0.97 7.6 3.4 2.1 6.4 1.1 2.2 2 0 0 2 2 2 0 BT1 family DUF4395 PF14340.6 gi|284164423|ref|YP_003402702.1| - 1.7 8.9 9.9 0.038 14.3 2.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4395) PMT_2 PF13231.6 gi|284164424|ref|YP_003402703.1| - 8e-06 26.2 18.3 8e-06 26.2 18.3 3.8 3 1 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.20 gi|284164425|ref|YP_003402704.1| - 2.7e-12 46.6 0.0 4.9e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|284164425|ref|YP_003402704.1| - 1.5e-11 45.0 2.5 1.5e-11 45.0 2.5 1.9 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|284164425|ref|YP_003402704.1| - 2.1e-11 44.4 0.1 8e-11 42.5 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284164425|ref|YP_003402704.1| - 2.8e-11 43.7 1.5 6.4e-11 42.5 0.1 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|284164425|ref|YP_003402704.1| - 0.022 15.2 0.0 0.051 14.0 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|284164425|ref|YP_003402704.1| - 0.03 14.4 0.0 0.27 11.3 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like DUF354 PF04007.12 gi|284164426|ref|YP_003402705.1| - 1.1e-14 54.3 0.0 1.5e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|284164426|ref|YP_003402705.1| - 1.3e-05 25.3 2.9 1.8e-05 24.8 1.1 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|284164426|ref|YP_003402705.1| - 4.3e-05 23.6 0.0 0.00015 21.8 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|284164426|ref|YP_003402705.1| - 0.0002 21.9 9.8 0.00047 20.6 1.9 2.4 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain B12-binding PF02310.19 gi|284164426|ref|YP_003402705.1| - 0.011 15.8 3.5 0.049 13.7 0.5 2.5 2 1 0 2 2 2 0 B12 binding domain UDPG_MGDP_dh_N PF03721.14 gi|284164427|ref|YP_003402706.1| - 5e-37 127.3 2.4 2.4e-36 125.0 0.1 2.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|284164427|ref|YP_003402706.1| - 9.9e-24 83.4 0.0 2.2e-23 82.3 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|284164427|ref|YP_003402706.1| - 3e-19 69.4 0.2 1.8e-18 66.9 0.1 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|284164427|ref|YP_003402706.1| - 2.4e-07 31.1 0.0 1.1e-06 28.9 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|284164427|ref|YP_003402706.1| - 2.9e-05 24.0 0.0 0.0001 22.2 0.0 1.9 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|284164427|ref|YP_003402706.1| - 7.8e-05 22.7 0.0 0.023 14.7 0.0 3.1 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|284164427|ref|YP_003402706.1| - 0.00012 21.5 0.0 0.0053 16.1 0.0 2.5 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|284164427|ref|YP_003402706.1| - 0.00019 21.1 0.0 0.00057 19.6 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|284164427|ref|YP_003402706.1| - 0.0018 18.5 1.2 0.41 10.9 0.1 2.9 2 1 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.17 gi|284164427|ref|YP_003402706.1| - 0.011 16.4 0.8 0.84 10.3 0.0 3.7 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|284164427|ref|YP_003402706.1| - 0.066 12.2 0.2 3.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Prephenate dehydrogenase HTH_IclR PF09339.10 gi|284164428|ref|YP_003402707.1| - 1.1e-05 25.1 0.0 2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284164428|ref|YP_003402707.1| - 2.1e-05 24.3 0.0 4.2e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284164428|ref|YP_003402707.1| - 0.00036 20.0 0.0 0.00062 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|284164428|ref|YP_003402707.1| - 0.0016 18.4 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|284164428|ref|YP_003402707.1| - 0.064 13.1 0.1 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.19 gi|284164428|ref|YP_003402707.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SIS PF01380.22 gi|284164429|ref|YP_003402708.1| - 2.4e-50 169.8 0.7 2.4e-26 92.1 0.3 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|284164429|ref|YP_003402708.1| - 3.3e-23 82.4 1.2 6.6e-23 81.4 0.1 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|284164429|ref|YP_003402708.1| - 1.7e-20 73.1 0.0 3.4e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|284164429|ref|YP_003402708.1| - 0.0015 17.5 0.0 0.0024 16.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4350 PF14258.6 gi|284164429|ref|YP_003402708.1| - 0.013 16.0 0.5 0.078 13.4 0.5 2.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) Pyr_excise PF03013.14 gi|284164429|ref|YP_003402708.1| - 0.014 15.4 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine dimer DNA glycosylase EccE PF11203.8 gi|284164429|ref|YP_003402708.1| - 1 9.7 6.0 14 6.0 0.3 3.1 1 1 2 3 3 3 0 Putative type VII ESX secretion system translocon, EccE PQQ_2 PF13360.6 gi|284164430|ref|YP_003402709.1| - 5.4e-33 114.6 15.3 6.5e-16 58.6 0.8 2.6 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|284164430|ref|YP_003402709.1| - 6.5e-18 63.7 4.9 0.0067 16.3 0.0 6.6 6 1 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|284164430|ref|YP_003402709.1| - 7.6e-17 61.2 16.8 0.01 16.3 0.1 7.9 8 0 0 8 8 8 6 PQQ-like domain SGL PF08450.12 gi|284164430|ref|YP_003402709.1| - 0.043 13.4 0.3 3.7 7.1 0.1 3.2 2 1 0 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region TAT_signal PF10518.9 gi|284164430|ref|YP_003402709.1| - 0.11 12.4 2.2 0.26 11.2 2.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3040 PF11239.8 gi|284164431|ref|YP_003402710.1| - 1.8 8.9 5.1 43 4.5 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) TMEMspv1-c74-12 PF11044.8 gi|284164432|ref|YP_003402711.1| - 0.38 10.8 3.0 0.61 10.1 3.0 1.2 1 0 0 1 1 1 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein CarboxypepD_reg PF13620.6 gi|284164433|ref|YP_003402712.1| - 2.1e-22 79.2 19.5 3.8e-13 49.5 5.3 2.7 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain Invasin_D3 PF09134.10 gi|284164433|ref|YP_003402712.1| - 5.8e-10 39.3 32.3 4.7e-06 26.8 10.1 3.0 3 0 0 3 3 3 2 Invasin, domain 3 CarbopepD_reg_2 PF13715.6 gi|284164433|ref|YP_003402712.1| - 3.3e-09 36.6 7.3 1.1e-05 25.4 0.9 2.7 2 0 0 2 2 2 2 CarboxypepD_reg-like domain PEGA PF08308.11 gi|284164433|ref|YP_003402712.1| - 4e-09 36.2 0.1 0.00053 19.8 0.0 2.8 3 0 0 3 3 3 2 PEGA domain Big_1 PF02369.16 gi|284164433|ref|YP_003402712.1| - 3.6e-08 33.3 20.4 8.2e-06 25.7 6.5 4.1 4 1 0 4 4 4 2 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|284164433|ref|YP_003402712.1| - 8.1e-06 25.9 2.3 0.09 12.9 0.1 2.6 2 1 0 2 2 2 2 Macroglobulin domain MG4 phage_tail_N PF08400.10 gi|284164433|ref|YP_003402712.1| - 9.3e-06 25.7 6.5 0.011 15.7 0.7 2.7 2 0 0 2 2 2 2 Prophage tail fibre N-terminal SWM_repeat PF13753.6 gi|284164433|ref|YP_003402712.1| - 8.1e-05 22.7 4.6 0.041 14.0 0.1 3.3 3 1 0 3 3 3 2 Putative flagellar system-associated repeat DUF824 PF05688.11 gi|284164433|ref|YP_003402712.1| - 0.00041 20.1 5.4 0.27 11.1 0.7 2.7 2 0 0 2 2 2 2 Salmonella repeat of unknown function (DUF824) DUF1533 PF07550.11 gi|284164433|ref|YP_003402712.1| - 0.0051 16.7 0.9 0.63 10.0 0.1 2.8 3 0 0 3 3 2 1 Protein of unknown function (DUF1533) DUF4399 PF14347.6 gi|284164433|ref|YP_003402712.1| - 0.013 15.9 0.5 1.1 9.7 0.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4399) YtkA PF13115.6 gi|284164433|ref|YP_003402712.1| - 0.025 15.2 4.7 0.12 13.0 1.0 2.6 2 0 0 2 2 2 0 YtkA-like IncE PF17627.2 gi|284164433|ref|YP_003402712.1| - 0.055 13.5 0.1 0.09 12.8 0.1 1.2 1 0 0 1 1 1 0 Inclusion membrane protein E DUF2606 PF10794.9 gi|284164433|ref|YP_003402712.1| - 0.065 13.0 0.0 4.9 6.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2606) ZirS_C PF16583.5 gi|284164433|ref|YP_003402712.1| - 0.099 12.2 2.2 1.2 8.7 0.2 2.3 2 0 0 2 2 2 0 Zinc-regulated secreted antivirulence protein C-terminal domain DUF3040 PF11239.8 gi|284164433|ref|YP_003402712.1| - 0.19 12.1 0.1 0.28 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) RIO1 PF01163.22 gi|284164434|ref|YP_003402713.1| - 2.9e-08 33.5 0.0 5e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|284164434|ref|YP_003402713.1| - 1.6e-05 24.9 5.7 0.0017 18.3 1.8 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|284164434|ref|YP_003402713.1| - 0.00031 20.2 0.0 0.00059 19.3 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-PolyVal PF18762.1 gi|284164434|ref|YP_003402713.1| - 0.091 12.7 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Acyl-CoA_dh_1 PF00441.24 gi|284164436|ref|YP_003402715.1| - 1.9e-48 164.5 0.3 2.6e-48 164.0 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284164436|ref|YP_003402715.1| - 8.9e-38 129.4 0.0 2.2e-37 128.1 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284164436|ref|YP_003402715.1| - 5.8e-26 90.5 0.0 9.7e-26 89.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284164436|ref|YP_003402715.1| - 7.3e-17 61.9 0.8 1e-16 61.4 0.8 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HupF_HypC PF01455.18 gi|284164437|ref|YP_003402716.1| - 0.018 15.1 0.1 0.038 14.1 0.1 1.6 1 0 0 1 1 1 0 HupF/HypC family TAT_signal PF10518.9 gi|284164437|ref|YP_003402716.1| - 0.062 13.2 2.2 0.1 12.5 2.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Nop14 PF04147.12 gi|284164437|ref|YP_003402716.1| - 3 5.9 10.9 3.8 5.6 10.9 1.1 1 0 0 1 1 1 0 Nop14-like family DUF2062 PF09835.9 gi|284164438|ref|YP_003402717.1| - 8.1e-21 74.4 1.2 9.6e-21 74.2 1.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) DUF202 PF02656.15 gi|284164438|ref|YP_003402717.1| - 5.4 7.5 11.9 3e+02 2.0 11.9 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) ELFV_dehydrog PF00208.21 gi|284164439|ref|YP_003402718.1| - 9.4e-73 244.9 0.4 1.2e-72 244.5 0.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|284164439|ref|YP_003402718.1| - 4.2e-54 181.9 0.0 7.3e-54 181.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.19 gi|284164439|ref|YP_003402718.1| - 0.0019 17.0 0.1 0.003 16.3 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.19 gi|284164439|ref|YP_003402718.1| - 0.0045 16.4 0.2 0.01 15.2 0.1 1.7 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HpcH_HpaI PF03328.14 gi|284164440|ref|YP_003402719.1| - 2.7e-57 193.4 4.5 3.5e-57 193.1 4.5 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|284164440|ref|YP_003402719.1| - 3.3e-10 39.6 0.1 7.9e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Cdc6_C PF09079.11 gi|284164441|ref|YP_003402720.1| - 2.9e-15 56.0 0.7 7.8e-15 54.6 0.1 2.0 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284164441|ref|YP_003402720.1| - 7.8e-12 45.6 0.0 1.8e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284164441|ref|YP_003402720.1| - 1.2e-11 45.3 0.0 3.7e-11 43.7 0.0 1.9 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|284164441|ref|YP_003402720.1| - 3.7e-07 30.6 0.1 1e-06 29.2 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284164441|ref|YP_003402720.1| - 4e-07 30.1 0.1 1.5e-06 28.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|284164441|ref|YP_003402720.1| - 1e-05 25.0 0.0 1.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|284164441|ref|YP_003402720.1| - 1.6e-05 24.9 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.13 gi|284164441|ref|YP_003402720.1| - 4.8e-05 22.6 0.0 0.00011 21.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|284164441|ref|YP_003402720.1| - 0.00029 20.6 0.0 0.00072 19.3 0.0 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF2791 PF10923.8 gi|284164441|ref|YP_003402720.1| - 0.0068 15.3 0.0 0.017 14.0 0.0 1.6 2 0 0 2 2 2 1 P-loop Domain of unknown function (DUF2791) ATPase_2 PF01637.18 gi|284164441|ref|YP_003402720.1| - 0.014 15.3 0.0 0.032 14.1 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|284164441|ref|YP_003402720.1| - 0.014 14.2 0.8 0.24 10.1 0.6 2.1 2 0 0 2 2 2 0 AAA domain CBFD_NFYB_HMF PF00808.23 gi|284164441|ref|YP_003402720.1| - 0.017 15.4 0.2 0.054 13.8 0.2 1.8 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Rad51 PF08423.11 gi|284164441|ref|YP_003402720.1| - 0.018 14.3 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Rad51 PhoH PF02562.16 gi|284164441|ref|YP_003402720.1| - 0.019 14.4 0.3 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.22 gi|284164441|ref|YP_003402720.1| - 0.023 13.9 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_2 PF07724.14 gi|284164441|ref|YP_003402720.1| - 0.042 14.0 0.0 0.089 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_assoc_2 PF16193.5 gi|284164441|ref|YP_003402720.1| - 0.049 14.0 0.4 0.11 12.8 0.4 1.6 1 0 0 1 1 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|284164441|ref|YP_003402720.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|284164441|ref|YP_003402720.1| - 0.1 11.9 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|284164441|ref|YP_003402720.1| - 0.1 13.0 0.0 0.27 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|284164441|ref|YP_003402720.1| - 0.11 13.1 0.1 0.37 11.3 0.1 2.1 1 1 0 1 1 1 0 ABC transporter RuvB_N PF05496.12 gi|284164441|ref|YP_003402720.1| - 0.13 12.0 0.1 5.5 6.7 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DsbD PF02683.15 gi|284164442|ref|YP_003402721.1| - 5.1e-09 36.3 16.1 9.6e-09 35.4 16.1 1.4 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Phage_holin_3_6 PF07332.11 gi|284164442|ref|YP_003402721.1| - 0.012 15.7 5.3 0.012 15.7 5.3 3.3 3 1 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DsbD_2 PF13386.6 gi|284164442|ref|YP_003402721.1| - 1.5 8.7 21.9 9.6 6.1 21.2 2.2 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Pkr1 PF08636.10 gi|284164442|ref|YP_003402721.1| - 2.3 8.4 6.4 0.31 11.2 0.8 2.4 2 0 0 2 2 2 0 ER protein Pkr1 Redoxin PF08534.10 gi|284164443|ref|YP_003402722.1| - 3e-06 27.0 0.1 3.9e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|284164443|ref|YP_003402722.1| - 0.00056 19.8 0.0 0.00078 19.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_2 PF13098.6 gi|284164443|ref|YP_003402722.1| - 0.005 17.3 0.0 0.0095 16.4 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|284164443|ref|YP_003402722.1| - 0.15 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin ELFV_dehydrog PF00208.21 gi|284164444|ref|YP_003402723.1| - 3.2e-70 236.6 0.0 4.1e-70 236.3 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|284164444|ref|YP_003402723.1| - 3.7e-54 182.1 0.0 6.4e-54 181.3 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|284164444|ref|YP_003402723.1| - 0.0012 18.3 0.0 0.0021 17.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|284164444|ref|YP_003402723.1| - 0.12 12.8 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Bac_GDH PF05088.12 gi|284164444|ref|YP_003402723.1| - 0.13 9.7 0.0 0.2 9.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AlaDh_PNT_C PF01262.21 gi|284164444|ref|YP_003402723.1| - 0.15 11.4 0.1 0.33 10.2 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|284164444|ref|YP_003402723.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Aldedh PF00171.22 gi|284164445|ref|YP_003402724.1| - 1.8e-140 468.5 0.0 2.1e-140 468.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Spore_YabQ PF09578.10 gi|284164450|ref|YP_003402729.1| - 0.022 15.0 3.8 0.027 14.7 3.8 1.1 1 0 0 1 1 1 0 Spore cortex protein YabQ (Spore_YabQ) DUF2105 PF09878.9 gi|284164450|ref|YP_003402729.1| - 0.053 13.3 4.6 0.059 13.1 4.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) Phage_holin_3_6 PF07332.11 gi|284164450|ref|YP_003402729.1| - 0.067 13.2 5.1 0.08 13.0 5.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III 2TM PF13239.6 gi|284164450|ref|YP_003402729.1| - 1.1 9.6 5.5 1.4 9.2 5.5 1.3 1 0 0 1 1 1 0 2TM domain FBPase PF00316.20 gi|284164451|ref|YP_003402730.1| - 7.1e-29 100.6 0.1 1e-28 100.1 0.1 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|284164451|ref|YP_003402730.1| - 0.00098 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Inositol monophosphatase family DeoC PF01791.9 gi|284164452|ref|YP_003402731.1| - 3e-36 125.2 0.0 3.5e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DNA_pol_lambd_f PF10391.9 gi|284164453|ref|YP_003402732.1| - 0.0055 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_5 PF14520.6 gi|284164453|ref|YP_003402732.1| - 0.018 15.6 0.0 0.05 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|284164453|ref|YP_003402732.1| - 0.091 13.0 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) Lipase_GDSL_3 PF14606.6 gi|284164454|ref|YP_003402733.1| - 3.7e-26 92.3 0.0 4.7e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.6 gi|284164454|ref|YP_003402733.1| - 8.2e-10 39.4 0.0 1.1e-09 38.9 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family DUF4886 PF16227.5 gi|284164454|ref|YP_003402733.1| - 0.0072 15.5 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4886) GxDLY PF14607.6 gi|284164454|ref|YP_003402733.1| - 0.018 14.8 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type Polysacc_syn_2C PF08485.10 gi|284164454|ref|YP_003402733.1| - 0.15 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein C-terminal PreAtp-grasp PF18604.1 gi|284164454|ref|YP_003402733.1| - 0.16 11.7 0.0 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Pre ATP-grasp domain 3HCDH_N PF02737.18 gi|284164455|ref|YP_003402734.1| - 9.5e-58 195.0 0.2 1.2e-57 194.7 0.2 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|284164455|ref|YP_003402734.1| - 7.2e-33 113.1 0.0 1.9e-32 111.7 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|284164455|ref|YP_003402734.1| - 0.00024 21.3 0.5 0.00055 20.1 0.2 1.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|284164455|ref|YP_003402734.1| - 0.0037 17.8 0.1 0.023 15.3 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|284164455|ref|YP_003402734.1| - 0.0039 16.8 0.7 0.049 13.2 0.3 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|284164455|ref|YP_003402734.1| - 0.022 14.1 0.1 0.04 13.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|284164455|ref|YP_003402734.1| - 0.026 13.7 0.0 0.052 12.8 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|284164455|ref|YP_003402734.1| - 0.049 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|284164455|ref|YP_003402734.1| - 0.23 11.0 1.1 0.38 10.3 0.1 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Aminotran_1_2 PF00155.21 gi|284164456|ref|YP_003402735.1| - 4.2e-64 217.0 0.0 4.8e-64 216.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|284164456|ref|YP_003402735.1| - 8.5e-10 38.1 0.0 4.1e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|284164456|ref|YP_003402735.1| - 3.2e-06 26.7 0.2 5.2e-06 26.0 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|284164456|ref|YP_003402735.1| - 0.00026 19.6 0.0 0.00042 19.0 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|284164456|ref|YP_003402735.1| - 0.00064 19.1 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase SQS_PSY PF00494.19 gi|284164459|ref|YP_003402738.1| - 4.2e-55 187.1 2.4 5.1e-55 186.8 2.4 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase HetR_C PF18460.1 gi|284164459|ref|YP_003402738.1| - 0.00064 19.6 2.7 0.019 14.8 0.1 3.7 3 1 1 4 4 4 1 Heterocyst differentiation regulator C-terminal Hood domain Arg_decarbox_C PF17944.1 gi|284164459|ref|YP_003402738.1| - 0.015 15.8 0.0 0.12 12.9 0.0 2.4 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension NAD_binding_10 PF13460.6 gi|284164460|ref|YP_003402739.1| - 8.7e-50 169.2 2.3 1e-49 169.0 2.3 1.0 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|284164460|ref|YP_003402739.1| - 8.6e-17 61.5 0.0 1.1e-16 61.1 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|284164460|ref|YP_003402739.1| - 1.4e-11 44.3 0.0 7.7e-11 41.9 0.0 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284164460|ref|YP_003402739.1| - 3e-06 26.5 0.0 3.8e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family KR PF08659.10 gi|284164460|ref|YP_003402739.1| - 0.0004 20.3 0.0 0.54 10.1 0.0 2.2 2 0 0 2 2 2 2 KR domain DapB_N PF01113.20 gi|284164460|ref|YP_003402739.1| - 0.0012 18.9 0.4 0.0019 18.3 0.4 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus RmlD_sub_bind PF04321.17 gi|284164460|ref|YP_003402739.1| - 0.0079 15.3 0.4 0.014 14.5 0.4 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|284164460|ref|YP_003402739.1| - 0.0085 15.5 0.0 0.035 13.5 0.0 1.8 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|284164460|ref|YP_003402739.1| - 0.019 14.2 0.0 0.078 12.1 0.0 1.8 1 1 0 2 2 2 0 Male sterility protein Semialdhyde_dh PF01118.24 gi|284164460|ref|YP_003402739.1| - 0.029 14.8 0.5 0.055 13.9 0.5 1.5 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|284164460|ref|YP_003402739.1| - 0.038 14.3 1.4 0.092 13.0 0.3 2.2 3 1 0 3 3 3 0 TrkA-N domain Polysacc_synt_2 PF02719.15 gi|284164460|ref|YP_003402739.1| - 0.064 12.4 0.0 0.84 8.7 0.0 2.0 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Acyl-CoA_dh_1 PF00441.24 gi|284164461|ref|YP_003402740.1| - 3.9e-48 163.5 0.9 5.4e-48 163.0 0.9 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284164461|ref|YP_003402740.1| - 5e-36 123.8 0.1 1.2e-35 122.5 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284164461|ref|YP_003402740.1| - 3.9e-25 88.7 0.5 5.7e-25 88.1 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284164461|ref|YP_003402740.1| - 2.7e-23 82.0 0.0 5.4e-23 81.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain PadR PF03551.14 gi|284164463|ref|YP_003402742.1| - 2.1e-05 24.4 0.1 3e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|284164463|ref|YP_003402742.1| - 0.0059 16.6 0.1 0.0089 16.1 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284164463|ref|YP_003402742.1| - 0.062 13.2 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|284164463|ref|YP_003402742.1| - 0.26 11.0 0.0 0.3 10.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF3267 PF11667.8 gi|284164464|ref|YP_003402743.1| - 2.3e-25 89.0 0.6 2.3e-25 89.0 0.6 2.1 2 0 0 2 2 2 1 Putative zincin peptidase DUF2256 PF10013.9 gi|284164466|ref|YP_003402745.1| - 0.033 14.3 0.2 0.053 13.7 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-CHCC PF10276.9 gi|284164466|ref|YP_003402745.1| - 0.11 12.5 0.2 0.11 12.5 0.2 1.8 2 0 0 2 2 2 0 Zinc-finger domain Rad50_zn_hook PF04423.14 gi|284164466|ref|YP_003402745.1| - 0.13 12.1 0.2 0.2 11.5 0.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif AAA_13 PF13166.6 gi|284164466|ref|YP_003402745.1| - 0.15 10.6 0.0 0.17 10.5 0.0 1.0 1 0 0 1 1 1 0 AAA domain UbiA PF01040.18 gi|284164467|ref|YP_003402746.1| - 2.9e-56 190.6 24.0 2.9e-56 190.6 24.0 3.1 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|284164467|ref|YP_003402746.1| - 1.2e-07 31.2 17.8 9.7e-06 24.9 10.3 3.8 3 2 1 4 4 4 2 Cytochrome oxidase assembly protein Aldo_ket_red PF00248.21 gi|284164468|ref|YP_003402747.1| - 6.7e-76 255.3 0.0 8.1e-76 255.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|284164468|ref|YP_003402747.1| - 0.2 10.2 0.0 0.28 9.7 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase PIN PF01850.21 gi|284164469|ref|YP_003402748.1| - 2.1e-11 44.4 0.1 2.3e-11 44.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain Aldo_ket_red PF00248.21 gi|284164470|ref|YP_003402749.1| - 3.9e-55 187.1 0.0 4.5e-55 186.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF3907 PF13047.6 gi|284164470|ref|YP_003402749.1| - 0.092 12.7 0.3 0.17 11.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3907) HBS1_N PF08938.10 gi|284164470|ref|YP_003402749.1| - 0.12 12.7 0.5 0.4 11.0 0.0 2.1 2 0 0 2 2 2 0 HBS1 N-terminus HTH_10 PF04967.12 gi|284164471|ref|YP_003402750.1| - 3.4e-12 46.0 0.0 5.4e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Complex1_51K PF01512.17 gi|284164472|ref|YP_003402751.1| - 3.6e-18 65.9 0.0 5.9e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|284164472|ref|YP_003402751.1| - 3.1e-08 33.5 0.1 5.8e-08 32.6 0.1 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|284164472|ref|YP_003402751.1| - 0.0001 22.1 0.0 0.00026 20.8 0.0 1.7 1 0 0 1 1 1 1 SLBB domain TrkA_N PF02254.18 gi|284164473|ref|YP_003402752.1| - 5.4e-41 139.5 12.5 5.9e-21 74.9 0.7 3.4 3 2 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|284164473|ref|YP_003402752.1| - 3e-26 91.0 2.5 3.5e-13 49.2 0.2 2.8 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|284164473|ref|YP_003402752.1| - 0.032 14.2 3.9 0.071 13.1 3.9 1.6 1 0 0 1 1 1 0 Ion channel NAD_binding_8 PF13450.6 gi|284164473|ref|YP_003402752.1| - 0.11 12.8 0.2 0.26 11.6 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Competence PF03772.16 gi|284164473|ref|YP_003402752.1| - 0.14 11.5 4.1 0.21 10.9 4.1 1.2 1 0 0 1 1 1 0 Competence protein NAD_binding_7 PF13241.6 gi|284164473|ref|YP_003402752.1| - 0.2 12.1 2.8 0.89 10.0 1.1 2.9 2 1 0 2 2 2 0 Putative NAD(P)-binding Bac_luciferase PF00296.20 gi|284164474|ref|YP_003402753.1| - 8.6e-51 173.2 4.8 2.1e-50 172.0 4.8 1.6 1 1 0 1 1 1 1 Luciferase-like monooxygenase DUF4142 PF13628.6 gi|284164474|ref|YP_003402753.1| - 0.0015 18.8 0.4 0.0023 18.2 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) Acetyltransf_9 PF13527.7 gi|284164475|ref|YP_003402754.1| - 2.2e-17 63.3 0.0 9.6e-17 61.3 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284164475|ref|YP_003402754.1| - 0.00021 21.5 0.0 0.0043 17.3 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Metallophos_2 PF12850.7 gi|284164476|ref|YP_003402755.1| - 1.1e-12 48.4 0.1 4.1e-05 23.8 0.1 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284164476|ref|YP_003402755.1| - 9.2e-10 39.4 0.6 2.3e-08 34.8 0.5 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase PBC PF03792.13 gi|284164476|ref|YP_003402755.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 PBC domain ABC_tran PF00005.27 gi|284164477|ref|YP_003402756.1| - 4.6e-28 98.5 0.0 8.8e-28 97.5 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|284164477|ref|YP_003402756.1| - 2.4e-15 57.2 0.0 2.4e-08 34.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|284164477|ref|YP_003402756.1| - 0.00016 21.5 0.0 0.13 12.0 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|284164477|ref|YP_003402756.1| - 0.00017 21.4 0.2 0.0086 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284164477|ref|YP_003402756.1| - 0.00024 21.7 0.2 0.00037 21.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284164477|ref|YP_003402756.1| - 0.001 18.8 0.4 0.0021 17.7 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TsaE PF02367.17 gi|284164477|ref|YP_003402756.1| - 0.0043 17.0 0.1 0.0076 16.3 0.1 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|284164477|ref|YP_003402756.1| - 0.006 16.8 0.2 0.013 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284164477|ref|YP_003402756.1| - 0.0064 16.9 0.1 0.012 16.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|284164477|ref|YP_003402756.1| - 0.0066 16.2 0.0 0.09 12.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|284164477|ref|YP_003402756.1| - 0.0069 16.0 0.0 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|284164477|ref|YP_003402756.1| - 0.008 15.9 0.0 0.36 10.6 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|284164477|ref|YP_003402756.1| - 0.0098 16.2 0.0 0.016 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284164477|ref|YP_003402756.1| - 0.015 15.7 0.2 0.049 14.1 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|284164477|ref|YP_003402756.1| - 0.015 15.2 0.1 0.028 14.3 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|284164477|ref|YP_003402756.1| - 0.021 14.9 0.1 0.072 13.2 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|284164477|ref|YP_003402756.1| - 0.028 14.6 0.0 0.077 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|284164477|ref|YP_003402756.1| - 0.032 13.6 0.1 0.083 12.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.19 gi|284164477|ref|YP_003402756.1| - 0.037 13.5 0.0 0.24 10.8 0.1 1.9 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|284164477|ref|YP_003402756.1| - 0.038 14.0 0.1 0.89 9.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|284164477|ref|YP_003402756.1| - 0.042 14.4 0.4 1.7 9.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|284164477|ref|YP_003402756.1| - 0.077 12.6 0.8 0.45 10.1 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|284164477|ref|YP_003402756.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|284164478|ref|YP_003402757.1| - 3.9e-26 91.8 7.9 3.9e-26 91.8 7.9 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|284164478|ref|YP_003402757.1| - 2.7e-16 59.6 1.6 2.7e-16 59.6 1.6 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|284164478|ref|YP_003402757.1| - 3.9e-06 26.4 9.5 3.9e-06 26.4 9.5 2.0 1 1 0 2 2 2 1 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|284164478|ref|YP_003402757.1| - 0.00088 18.5 0.7 0.0013 17.9 0.7 1.2 1 0 0 1 1 1 1 Membrane protein of 12 TMs OppC_N PF12911.7 gi|284164478|ref|YP_003402757.1| - 0.0043 17.0 0.3 0.0043 17.0 0.3 3.5 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C DUF420 PF04238.12 gi|284164480|ref|YP_003402759.1| - 2.4e-37 128.2 11.1 2.4e-37 128.2 11.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF4084 PF13321.6 gi|284164480|ref|YP_003402759.1| - 0.016 14.8 2.9 0.023 14.3 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4084) DUF1240 PF06836.12 gi|284164480|ref|YP_003402759.1| - 0.73 10.4 3.5 0.45 11.1 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) Vma12 PF11712.8 gi|284164480|ref|YP_003402759.1| - 0.85 9.7 3.8 18 5.4 0.4 2.3 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF3413 PF11893.8 gi|284164480|ref|YP_003402759.1| - 1.1 8.4 8.5 1.9 7.6 0.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3413) Cytochrom_B561 PF03188.16 gi|284164480|ref|YP_003402759.1| - 2.4 8.3 10.9 0.25 11.5 4.2 2.1 1 1 1 2 2 2 0 Eukaryotic cytochrome b561 Saf_2TM PF18303.1 gi|284164480|ref|YP_003402759.1| - 3.6 7.2 8.4 0.28 10.7 1.2 2.2 1 1 0 2 2 2 0 SAVED-fused 2TM effector domain DnaJ PF00226.31 gi|284164481|ref|YP_003402760.1| - 5e-14 52.2 0.0 7.9e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DUF4232 PF14016.6 gi|284164481|ref|YP_003402760.1| - 0.094 12.9 1.4 0.26 11.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4232) HalOD1 PF18545.1 gi|284164482|ref|YP_003402761.1| - 7.5e-27 93.4 0.0 9e-27 93.2 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Phage_tail_X PF05489.12 gi|284164482|ref|YP_003402761.1| - 0.17 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Phage Tail Protein X tRNA-synt_1 PF00133.22 gi|284164483|ref|YP_003402762.1| - 2.8e-58 197.6 0.1 1e-24 86.8 0.2 4.9 2 2 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|284164483|ref|YP_003402762.1| - 5.3e-51 172.8 0.0 1.8e-46 158.0 0.0 2.3 2 0 0 2 2 2 2 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|284164483|ref|YP_003402762.1| - 1.1e-30 106.7 0.0 4.2e-21 75.1 0.0 4.2 3 1 1 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|284164483|ref|YP_003402762.1| - 1.7e-15 57.3 0.0 2.9e-15 56.5 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|284164483|ref|YP_003402762.1| - 0.0014 17.6 0.0 0.91 8.4 0.0 3.3 3 0 0 3 3 3 1 tRNA synthetases class I (K) DZR PF12773.7 gi|284164483|ref|YP_003402762.1| - 0.0021 18.1 2.2 0.63 10.1 0.4 2.6 2 1 0 2 2 2 2 Double zinc ribbon PknG_rubred PF16919.5 gi|284164483|ref|YP_003402762.1| - 0.0025 18.0 0.6 0.0073 16.5 0.1 2.0 2 0 0 2 2 2 1 Protein kinase G rubredoxin domain tRNA-synt_1e PF01406.19 gi|284164483|ref|YP_003402762.1| - 0.0091 15.4 0.1 1.5 8.1 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain IBR PF01485.21 gi|284164483|ref|YP_003402762.1| - 0.022 15.0 0.4 0.23 11.7 0.1 2.4 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain Zn-ribbon_8 PF09723.10 gi|284164483|ref|YP_003402762.1| - 0.058 13.5 6.9 0.45 10.7 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|284164483|ref|YP_003402762.1| - 0.31 11.1 0.0 0.31 11.1 0.0 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|284164483|ref|YP_003402762.1| - 4.2 7.0 10.3 5.3 6.6 0.4 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|284164483|ref|YP_003402762.1| - 5.2 7.3 9.1 2.8 8.2 0.3 3.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Aldedh PF00171.22 gi|284164486|ref|YP_003402765.1| - 5.6e-141 470.2 0.0 6.8e-141 469.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|284164486|ref|YP_003402765.1| - 0.036 14.1 0.7 0.092 12.8 0.7 1.7 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.14 gi|284164486|ref|YP_003402765.1| - 0.038 13.0 0.1 0.29 10.1 0.0 2.3 2 1 0 2 2 2 0 Acyl-CoA reductase (LuxC) SPOUT_MTase_2 PF14419.6 gi|284164486|ref|YP_003402765.1| - 0.07 12.5 0.0 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP Tmemb_40 PF10160.9 gi|284164487|ref|YP_003402766.1| - 0.075 12.5 0.0 0.08 12.4 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein NTP_transferase PF00483.23 gi|284164488|ref|YP_003402767.1| - 1.4e-37 129.7 0.0 3.2e-37 128.5 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|284164488|ref|YP_003402767.1| - 1.9e-16 60.8 0.0 2.7e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|284164488|ref|YP_003402767.1| - 1.5e-10 40.3 9.8 0.0021 17.7 0.1 4.8 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|284164488|ref|YP_003402767.1| - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Bactofilin PF04519.13 gi|284164488|ref|YP_003402767.1| - 0.027 14.8 1.0 0.059 13.7 1.0 1.5 1 0 0 1 1 1 0 Polymer-forming cytoskeletal Hexapep_2 PF14602.6 gi|284164488|ref|YP_003402767.1| - 0.049 13.4 4.3 3.1 7.6 0.2 3.4 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|284164488|ref|YP_003402767.1| - 0.097 10.8 0.1 0.13 10.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) PMT PF02366.18 gi|284164489|ref|YP_003402768.1| - 0.0094 15.6 2.6 0.011 15.3 2.6 1.1 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase MerC PF03203.14 gi|284164489|ref|YP_003402768.1| - 0.24 11.8 4.5 0.32 11.5 4.5 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein DUF4131 PF13567.6 gi|284164489|ref|YP_003402768.1| - 2.8 7.6 9.3 5 6.7 9.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4350 PF14258.6 gi|284164490|ref|YP_003402769.1| - 8.4e-10 39.0 0.2 8.4e-10 39.0 0.2 3.3 4 1 0 4 4 4 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|284164490|ref|YP_003402769.1| - 0.0046 16.5 0.0 0.013 14.9 0.0 1.7 2 1 0 2 2 2 1 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.10 gi|284164490|ref|YP_003402769.1| - 0.02 14.4 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain DUF4159 PF13709.6 gi|284164490|ref|YP_003402769.1| - 0.16 11.4 0.8 0.45 9.9 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4159) AAA_3 PF07726.11 gi|284164491|ref|YP_003402770.1| - 2.2e-61 205.5 1.0 2.6e-61 205.2 0.2 1.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284164491|ref|YP_003402770.1| - 2.1e-18 66.7 0.0 3.7e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|284164491|ref|YP_003402770.1| - 1.6e-17 63.1 2.9 3.4e-17 62.0 2.9 1.6 1 0 0 1 1 1 1 AAA lid domain MCM PF00493.23 gi|284164491|ref|YP_003402770.1| - 1.3e-05 24.4 0.0 2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|284164491|ref|YP_003402770.1| - 3e-05 23.5 0.3 0.025 13.9 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|284164491|ref|YP_003402770.1| - 3.7e-05 23.5 0.0 0.00028 20.6 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|284164491|ref|YP_003402770.1| - 9.1e-05 22.3 0.1 0.00084 19.1 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|284164491|ref|YP_003402770.1| - 0.00031 21.2 0.0 0.0006 20.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284164491|ref|YP_003402770.1| - 0.04 14.3 0.1 0.12 12.8 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain Gpr1_Fun34_YaaH PF01184.19 gi|284164493|ref|YP_003402772.1| - 0.3 10.7 10.0 0.44 10.1 10.0 1.4 1 1 0 1 1 1 0 GPR1/FUN34/yaaH family DUF58 PF01882.18 gi|284164494|ref|YP_003402773.1| - 5.9e-23 81.0 0.3 1.7e-22 79.5 0.3 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 CarboxypepD_reg PF13620.6 gi|284164495|ref|YP_003402774.1| - 3.2e-05 24.1 8.8 0.0026 18.0 0.3 3.0 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|284164495|ref|YP_003402774.1| - 0.0016 18.4 1.0 0.21 11.6 0.1 2.8 2 0 0 2 2 2 1 CarboxypepD_reg-like domain DUF4129 PF13559.6 gi|284164495|ref|YP_003402774.1| - 0.017 15.4 3.7 0.017 15.4 3.7 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4129) TOBE_2 PF08402.10 gi|284164495|ref|YP_003402774.1| - 0.047 13.9 2.3 0.21 11.8 0.2 2.7 2 0 0 2 2 2 0 TOBE domain CooC_C PF15976.5 gi|284164495|ref|YP_003402774.1| - 0.082 13.0 0.1 0.56 10.3 0.0 2.3 2 0 0 2 2 2 0 CS1-pili formation C-terminal YbgS PF13985.6 gi|284164495|ref|YP_003402774.1| - 0.1 12.9 2.0 0.13 12.5 0.5 1.9 2 0 0 2 2 2 0 YbgS-like protein ZapA PF05164.13 gi|284164495|ref|YP_003402774.1| - 0.81 10.2 5.5 1.3 9.5 4.3 2.0 1 1 0 1 1 1 0 Cell division protein ZapA HTH_24 PF13412.6 gi|284164496|ref|YP_003402775.1| - 2.7e-11 42.8 0.2 1.5e-07 30.8 0.0 2.8 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284164496|ref|YP_003402775.1| - 3.2e-08 33.3 0.0 1.3e-07 31.4 0.0 2.1 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284164496|ref|YP_003402775.1| - 2.5e-07 30.5 0.0 6e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|284164496|ref|YP_003402775.1| - 5e-07 29.4 0.5 0.00036 20.3 0.0 3.1 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284164496|ref|YP_003402775.1| - 1.7e-06 27.4 0.1 9.7e-06 25.0 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|284164496|ref|YP_003402775.1| - 3.1e-05 23.6 0.0 0.41 10.5 0.0 2.9 3 0 0 3 3 3 2 Homeodomain-like domain HTH_10 PF04967.12 gi|284164496|ref|YP_003402775.1| - 0.0034 17.1 0.9 0.031 14.1 0.1 2.7 2 1 0 2 2 2 1 HTH DNA binding domain HTH_11 PF08279.12 gi|284164496|ref|YP_003402775.1| - 0.0057 16.6 0.1 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|284164496|ref|YP_003402775.1| - 0.0076 16.4 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.22 gi|284164496|ref|YP_003402775.1| - 0.0095 16.0 0.1 0.046 13.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|284164496|ref|YP_003402775.1| - 0.013 15.8 2.7 0.11 12.9 0.0 2.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164496|ref|YP_003402775.1| - 0.013 15.5 0.2 0.23 11.5 0.1 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Phage_CI_repr PF07022.13 gi|284164496|ref|YP_003402775.1| - 0.036 14.2 0.1 0.1 12.7 0.0 1.9 2 0 0 2 2 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_30 PF13556.6 gi|284164496|ref|YP_003402775.1| - 0.063 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|284164496|ref|YP_003402775.1| - 0.073 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_1 PF00126.27 gi|284164496|ref|YP_003402775.1| - 0.074 13.0 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|284164496|ref|YP_003402775.1| - 0.1 12.4 0.3 1.1 9.1 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|284164496|ref|YP_003402775.1| - 0.21 11.9 0.0 0.41 10.9 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 gi|284164496|ref|YP_003402775.1| - 0.49 10.2 3.0 1.7 8.5 0.1 2.8 3 0 0 3 3 3 0 IclR helix-turn-helix domain SpoIIIAH PF12685.7 gi|284164496|ref|YP_003402775.1| - 1.2 8.9 11.8 0.21 11.4 4.7 2.2 2 0 0 2 2 2 0 SpoIIIAH-like protein DUF1616 PF07760.11 gi|284164497|ref|YP_003402776.1| - 5.9e-124 413.2 0.0 6.8e-124 413.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4870 PF09685.10 gi|284164497|ref|YP_003402776.1| - 0.011 15.9 0.1 0.057 13.5 0.0 2.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4870) MacB_PCD PF12704.7 gi|284164498|ref|YP_003402777.1| - 1.9e-22 80.6 3.0 1.9e-22 80.6 3.0 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|284164498|ref|YP_003402777.1| - 5.2e-08 33.3 2.2 5.2e-08 33.3 2.2 3.0 3 0 0 3 3 3 1 FtsX-like permease family Glycophorin_A PF01102.18 gi|284164498|ref|YP_003402777.1| - 0.069 13.4 0.1 2 8.7 0.0 2.4 2 0 0 2 2 2 0 Glycophorin A TPPK_C PF12555.8 gi|284164498|ref|YP_003402777.1| - 0.16 12.1 0.3 0.16 12.1 0.3 3.5 4 0 0 4 4 4 0 Thiamine pyrophosphokinase C terminal LptF_LptG PF03739.14 gi|284164498|ref|YP_003402777.1| - 0.57 9.0 7.3 0.39 9.5 4.5 2.0 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG FtsX PF02687.21 gi|284164499|ref|YP_003402778.1| - 1.8e-06 28.3 2.2 1.8e-06 28.3 2.2 2.9 3 0 0 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 gi|284164500|ref|YP_003402779.1| - 6.3e-36 123.9 0.0 8.2e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|284164500|ref|YP_003402779.1| - 0.0001 22.1 0.1 0.0042 16.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|284164500|ref|YP_003402779.1| - 0.00012 22.0 0.1 0.012 15.4 0.1 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284164500|ref|YP_003402779.1| - 0.00024 20.8 0.1 0.00047 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|284164500|ref|YP_003402779.1| - 0.00052 20.4 1.5 0.00086 19.7 1.5 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|284164500|ref|YP_003402779.1| - 0.00081 18.9 0.1 0.023 14.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.6 gi|284164500|ref|YP_003402779.1| - 0.0074 16.6 0.0 0.82 10.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|284164500|ref|YP_003402779.1| - 0.014 15.3 0.1 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|284164500|ref|YP_003402779.1| - 0.041 13.2 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|284164500|ref|YP_003402779.1| - 0.045 14.3 0.1 0.48 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|284164500|ref|YP_003402779.1| - 0.052 13.5 0.2 1.7 8.6 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|284164500|ref|YP_003402779.1| - 0.054 13.5 0.0 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.6 gi|284164500|ref|YP_003402779.1| - 0.069 12.9 0.0 0.088 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|284164500|ref|YP_003402779.1| - 0.082 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|284164500|ref|YP_003402779.1| - 0.11 12.7 1.4 0.12 12.5 0.4 1.7 2 1 0 2 2 2 0 AAA domain DUF1129 PF06570.11 gi|284164501|ref|YP_003402780.1| - 0.0044 16.5 1.1 0.0074 15.8 0.5 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1129) DUF3464 PF11947.8 gi|284164501|ref|YP_003402780.1| - 3.8 7.3 4.9 35 4.1 1.6 2.4 2 1 0 2 2 2 0 Photosynthesis affected mutant 68 PepSY_TM PF03929.16 gi|284164501|ref|YP_003402780.1| - 5 6.7 12.9 0.12 12.0 2.6 3.0 1 1 1 3 3 3 0 PepSY-associated TM region TrmB PF01978.19 gi|284164502|ref|YP_003402781.1| - 3.1e-05 23.8 0.0 3.7e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_43 PF09904.9 gi|284164502|ref|YP_003402781.1| - 0.03 14.3 0.1 0.034 14.1 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Sulfolobus_pRN PF05584.11 gi|284164502|ref|YP_003402781.1| - 0.043 13.9 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein WbqC PF08889.11 gi|284164503|ref|YP_003402782.1| - 1.2e-81 273.8 0.0 1.3e-81 273.7 0.0 1.0 1 0 0 1 1 1 1 WbqC-like protein family Epimerase PF01370.21 gi|284164507|ref|YP_003402786.1| - 4.3e-46 157.3 0.2 5.1e-46 157.1 0.2 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284164507|ref|YP_003402786.1| - 2e-42 145.8 0.2 1.4e-41 143.1 0.2 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|284164507|ref|YP_003402786.1| - 8.3e-13 48.1 0.1 1.1e-12 47.7 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|284164507|ref|YP_003402786.1| - 5e-11 42.1 0.0 1.1e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284164507|ref|YP_003402786.1| - 4.9e-10 39.0 0.2 3.3e-08 33.0 0.2 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|284164507|ref|YP_003402786.1| - 1.1e-07 31.3 0.0 4.2e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein KR PF08659.10 gi|284164507|ref|YP_003402786.1| - 0.0053 16.7 0.0 0.43 10.5 0.0 2.2 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.6 gi|284164507|ref|YP_003402786.1| - 0.021 14.7 0.0 0.046 13.6 0.0 1.5 1 1 0 1 1 1 0 NAD(P)H-binding adh_short PF00106.25 gi|284164507|ref|YP_003402786.1| - 0.057 12.9 0.3 0.69 9.3 0.0 2.4 1 1 1 2 2 2 0 short chain dehydrogenase NTP_transferase PF00483.23 gi|284164508|ref|YP_003402787.1| - 9.9e-36 123.6 0.0 1.3e-35 123.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|284164508|ref|YP_003402787.1| - 6.7e-16 59.1 1.3 7.2e-16 58.9 0.1 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|284164508|ref|YP_003402787.1| - 2.5e-08 33.3 19.2 0.00073 19.2 0.3 4.8 5 0 0 5 5 5 3 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|284164508|ref|YP_003402787.1| - 0.025 13.5 0.5 0.33 9.9 0.1 2.2 2 0 0 2 2 2 0 L-fucokinase Hexapep_2 PF14602.6 gi|284164508|ref|YP_003402787.1| - 0.88 9.4 15.8 0.079 12.7 0.7 4.2 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|284164509|ref|YP_003402788.1| - 1.3e-50 170.6 0.1 3.6e-24 85.1 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|284164509|ref|YP_003402788.1| - 1.2e-21 77.3 0.3 2.7e-21 76.1 0.3 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|284164509|ref|YP_003402788.1| - 1.3e-19 70.4 0.0 2.6e-19 69.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|284164509|ref|YP_003402788.1| - 0.021 14.8 0.1 0.49 10.4 0.0 2.6 2 0 0 2 2 2 0 SIS domain GATase_4 PF13230.6 gi|284164509|ref|YP_003402788.1| - 0.026 13.4 0.0 0.048 12.6 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Epimerase PF01370.21 gi|284164510|ref|YP_003402789.1| - 5.9e-58 196.2 0.6 7.3e-58 195.9 0.6 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284164510|ref|YP_003402789.1| - 5e-51 174.1 0.8 1.3e-50 172.7 0.8 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284164510|ref|YP_003402789.1| - 2.1e-21 76.1 0.1 2.8e-21 75.8 0.1 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284164510|ref|YP_003402789.1| - 2.1e-17 63.2 0.1 1.9e-16 60.1 0.1 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|284164510|ref|YP_003402789.1| - 6.9e-17 61.5 3.3 9.1e-17 61.1 3.3 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284164510|ref|YP_003402789.1| - 1.4e-11 44.7 0.7 2.2e-11 44.0 0.7 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284164510|ref|YP_003402789.1| - 6.1e-11 42.0 0.2 2.3e-06 27.0 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|284164510|ref|YP_003402789.1| - 0.00041 20.0 0.3 0.00064 19.3 0.1 1.6 2 0 0 2 2 2 1 NmrA-like family Semialdhyde_dh PF01118.24 gi|284164510|ref|YP_003402789.1| - 0.0043 17.5 0.3 0.012 16.0 0.3 1.9 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|284164510|ref|YP_003402789.1| - 0.0083 16.4 0.5 0.048 13.9 0.2 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|284164510|ref|YP_003402789.1| - 0.02 14.8 0.6 0.46 10.4 0.6 2.6 1 1 0 1 1 1 0 KR domain THF_DHG_CYH_C PF02882.19 gi|284164510|ref|YP_003402789.1| - 0.024 14.0 0.2 0.086 12.2 0.1 2.0 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain adh_short PF00106.25 gi|284164510|ref|YP_003402789.1| - 0.054 12.9 0.8 0.1 12.0 0.8 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Epimerase PF01370.21 gi|284164512|ref|YP_003402791.1| - 1.7e-19 70.2 0.0 3.1e-19 69.4 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284164512|ref|YP_003402791.1| - 3e-15 56.5 0.2 1.1e-14 54.6 0.2 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|284164512|ref|YP_003402791.1| - 5.1e-05 22.5 0.0 0.021 13.9 0.0 2.7 2 1 0 2 2 2 2 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|284164512|ref|YP_003402791.1| - 0.0029 16.8 0.0 0.012 14.8 0.0 2.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|284164513|ref|YP_003402792.1| - 2.3e-50 171.3 0.1 2.8e-50 171.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284164513|ref|YP_003402792.1| - 1.7e-35 123.0 0.0 2.1e-35 122.7 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284164513|ref|YP_003402792.1| - 3.6e-28 98.4 0.1 8.5e-28 97.1 0.1 1.5 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284164513|ref|YP_003402792.1| - 1.2e-14 54.1 0.1 1.4e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|284164513|ref|YP_003402792.1| - 8.8e-13 48.0 0.0 3.2e-12 46.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|284164513|ref|YP_003402792.1| - 1.2e-12 47.5 1.0 3.8e-08 32.8 0.2 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|284164513|ref|YP_003402792.1| - 8.7e-12 45.3 0.0 1.4e-11 44.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|284164513|ref|YP_003402792.1| - 1.7e-05 24.5 0.0 3.1e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|284164513|ref|YP_003402792.1| - 2e-05 24.6 0.1 5e-05 23.3 0.1 1.6 1 1 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|284164513|ref|YP_003402792.1| - 0.00016 21.9 0.1 0.00031 21.0 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|284164513|ref|YP_003402792.1| - 0.008 16.3 0.1 0.013 15.6 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain adh_short PF00106.25 gi|284164513|ref|YP_003402792.1| - 0.02 14.4 0.1 0.036 13.5 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase DUF2597 PF10772.9 gi|284164513|ref|YP_003402792.1| - 0.11 12.6 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2597) Epimerase PF01370.21 gi|284164514|ref|YP_003402793.1| - 1.3e-40 139.4 0.0 1.5e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284164514|ref|YP_003402793.1| - 9.5e-28 97.5 0.0 1.1e-27 97.3 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|284164514|ref|YP_003402793.1| - 2.7e-26 92.3 0.2 3.6e-26 91.9 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|284164514|ref|YP_003402793.1| - 1.6e-22 79.8 0.0 3.4e-22 78.8 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284164514|ref|YP_003402793.1| - 9.7e-13 47.9 0.0 5.6e-12 45.4 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|284164514|ref|YP_003402793.1| - 3.9e-11 42.6 0.0 2.4e-07 30.2 0.0 2.8 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|284164514|ref|YP_003402793.1| - 2.7e-08 33.9 0.1 9.6e-08 32.1 0.0 1.9 1 1 1 2 2 2 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|284164514|ref|YP_003402793.1| - 3.7e-05 24.0 0.1 8.3e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|284164514|ref|YP_003402793.1| - 0.011 15.3 0.3 0.073 12.6 0.1 2.0 2 0 0 2 2 2 0 NmrA-like family Ldh_1_N PF00056.23 gi|284164514|ref|YP_003402793.1| - 0.018 15.1 0.2 0.054 13.6 0.1 1.8 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|284164514|ref|YP_003402793.1| - 0.023 15.1 0.2 0.068 13.6 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|284164514|ref|YP_003402793.1| - 0.048 13.8 0.8 0.15 12.2 0.1 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.18 gi|284164514|ref|YP_003402793.1| - 0.073 13.3 0.1 0.16 12.2 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Glycos_transf_2 PF00535.26 gi|284164515|ref|YP_003402794.1| - 4.5e-22 78.7 0.0 6.5e-22 78.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2304 PF10066.9 gi|284164515|ref|YP_003402794.1| - 9.7e-08 32.2 1.9 1.6e-07 31.5 1.9 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) Glyco_tranf_2_3 PF13641.6 gi|284164515|ref|YP_003402794.1| - 4.2e-05 23.6 0.0 6.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DAPDH_C PF16654.5 gi|284164515|ref|YP_003402794.1| - 0.072 12.9 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Diaminopimelic acid dehydrogenase C-terminal domain Rotamase_3 PF13616.6 gi|284164515|ref|YP_003402794.1| - 0.094 13.3 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 PPIC-type PPIASE domain Glycos_transf_1 PF00534.20 gi|284164516|ref|YP_003402795.1| - 7.2e-35 120.0 0.0 2.3e-34 118.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284164516|ref|YP_003402795.1| - 2.9e-32 111.9 0.1 4.5e-31 108.1 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284164516|ref|YP_003402795.1| - 2.5e-15 56.9 0.0 1.5e-14 54.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284164516|ref|YP_003402795.1| - 2e-10 41.3 0.3 3.6e-09 37.3 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|284164516|ref|YP_003402795.1| - 0.00027 21.3 0.0 0.00055 20.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|284164516|ref|YP_003402795.1| - 0.00032 19.5 0.0 0.026 13.2 0.0 2.2 1 1 0 1 1 1 1 Glycosyltransferase family 20 DUF4165 PF13752.6 gi|284164516|ref|YP_003402795.1| - 0.12 12.4 0.2 0.36 10.8 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4165) LPG_synthase_TM PF03706.13 gi|284164517|ref|YP_003402796.1| - 6.6e-21 75.1 31.6 8.3e-21 74.8 31.6 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Acetyltransf_3 PF13302.7 gi|284164519|ref|YP_003402798.1| - 1e-19 71.6 0.1 1.3e-19 71.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284164519|ref|YP_003402798.1| - 7.9e-05 22.9 0.2 0.00012 22.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family YdjM PF04307.14 gi|284164520|ref|YP_003402799.1| - 8.2e-11 41.5 5.8 1.7e-10 40.4 5.8 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|284164520|ref|YP_003402799.1| - 0.051 13.6 0.0 0.12 12.3 0.0 1.6 1 1 0 1 1 1 0 Zinc dependent phospholipase C YdjM PF04307.14 gi|284164523|ref|YP_003402802.1| - 2e-11 43.5 6.9 2e-11 43.5 6.9 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase OrfB_Zn_ribbon PF07282.11 gi|284164524|ref|YP_003402803.1| - 7e-19 67.5 0.4 1.2e-18 66.8 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain AbiEi_4 PF13338.6 gi|284164526|ref|YP_003402805.1| - 3.5e-05 23.9 0.0 5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|284164526|ref|YP_003402805.1| - 0.002 18.0 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284164526|ref|YP_003402805.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|284164526|ref|YP_003402805.1| - 0.023 14.2 0.1 0.16 11.5 0.1 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284164526|ref|YP_003402805.1| - 0.083 12.8 0.0 0.17 11.8 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|284164526|ref|YP_003402805.1| - 0.18 11.5 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Terminase_6 PF03237.15 gi|284164527|ref|YP_003402806.1| - 5.1e-07 29.6 0.0 1.8e-06 27.8 0.0 1.9 2 1 0 2 2 2 1 Terminase-like family Terminase_3 PF04466.13 gi|284164527|ref|YP_003402806.1| - 0.09 12.3 0.0 0.95 9.0 0.0 2.1 1 1 0 1 1 1 0 Phage terminase large subunit ALF PF03752.13 gi|284164527|ref|YP_003402806.1| - 0.67 10.0 3.9 1.1 9.2 1.6 2.6 2 0 0 2 2 2 0 Short repeats of unknown function Cdc6_C PF09079.11 gi|284164529|ref|YP_003402808.1| - 0.015 15.2 0.0 0.043 13.8 0.0 1.9 1 1 1 2 2 2 0 CDC6, C terminal winged helix domain DiS_P_DiS PF06750.13 gi|284164530|ref|YP_003402809.1| - 0.081 13.1 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Response_reg PF00072.24 gi|284164531|ref|YP_003402810.1| - 1.1e-15 57.8 0.0 1.3e-15 57.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Herpes_UL51 PF04540.13 gi|284164532|ref|YP_003402811.1| - 0.05 13.3 0.2 0.056 13.2 0.2 1.0 1 0 0 1 1 1 0 Herpesvirus UL51 protein RDM PF11002.8 gi|284164532|ref|YP_003402811.1| - 0.082 12.9 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 RFPL defining motif (RDM) HTH_10 PF04967.12 gi|284164533|ref|YP_003402812.1| - 4.5e-16 58.4 0.4 8.4e-16 57.5 0.4 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284164533|ref|YP_003402812.1| - 5.9e-10 39.2 1.0 5.9e-10 39.2 1.0 1.9 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_3 PF01381.22 gi|284164533|ref|YP_003402812.1| - 0.01 15.9 0.1 0.037 14.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix MarR_2 PF12802.7 gi|284164533|ref|YP_003402812.1| - 0.023 14.6 0.2 0.091 12.7 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|284164533|ref|YP_003402812.1| - 0.072 12.7 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|284164533|ref|YP_003402812.1| - 0.32 10.8 1.6 0.35 10.6 0.1 1.9 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_AsnC-type PF13404.6 gi|284164533|ref|YP_003402812.1| - 0.39 10.6 0.2 0.39 10.6 0.2 2.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Glyoxalase PF00903.25 gi|284164535|ref|YP_003402814.1| - 1.1e-16 61.2 0.2 1.4e-16 60.8 0.2 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284164535|ref|YP_003402814.1| - 1.6e-12 47.6 0.1 1.8e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|284164535|ref|YP_003402814.1| - 8e-08 32.2 0.0 2.4e-06 27.4 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|284164535|ref|YP_003402814.1| - 1.3e-06 29.1 0.1 1.8e-06 28.7 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284164535|ref|YP_003402814.1| - 1.6e-05 25.1 0.3 3.5e-05 24.0 0.3 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain HTH_DeoR PF08220.12 gi|284164537|ref|YP_003402816.1| - 0.0044 16.7 0.0 0.009 15.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain PqqD PF05402.12 gi|284164537|ref|YP_003402816.1| - 0.0056 17.0 0.4 0.026 14.8 0.0 2.0 2 0 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_Tnp_ISL3 PF13542.6 gi|284164537|ref|YP_003402816.1| - 0.079 12.4 1.0 9 5.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 AAA_22 PF13401.6 gi|284164538|ref|YP_003402817.1| - 1.9e-08 34.7 0.0 3.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284164538|ref|YP_003402817.1| - 2.5e-07 31.3 0.3 2.7e-06 27.9 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284164538|ref|YP_003402817.1| - 6e-07 29.9 0.0 1.3e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|284164538|ref|YP_003402817.1| - 1.5e-05 25.0 0.0 2.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Cdc6_C PF09079.11 gi|284164538|ref|YP_003402817.1| - 0.00015 21.7 0.0 0.00047 20.1 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain Sigma54_activat PF00158.26 gi|284164538|ref|YP_003402817.1| - 0.0026 17.5 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|284164538|ref|YP_003402817.1| - 0.0052 17.1 0.0 0.027 14.8 0.0 2.0 2 0 0 2 2 2 1 RNA helicase AAA_11 PF13086.6 gi|284164538|ref|YP_003402817.1| - 0.0057 16.5 0.0 0.008 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|284164538|ref|YP_003402817.1| - 0.0063 16.9 0.1 0.015 15.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|284164538|ref|YP_003402817.1| - 0.0093 16.0 0.0 0.027 14.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|284164538|ref|YP_003402817.1| - 0.01 15.4 0.0 1.3 8.6 0.0 2.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|284164538|ref|YP_003402817.1| - 0.026 13.9 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|284164538|ref|YP_003402817.1| - 0.027 14.2 0.1 0.089 12.5 0.0 1.9 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|284164538|ref|YP_003402817.1| - 0.074 12.8 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein ResIII PF04851.15 gi|284164538|ref|YP_003402817.1| - 0.078 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_14 PF13173.6 gi|284164538|ref|YP_003402817.1| - 0.18 11.9 0.0 0.52 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain LZ_Tnp_IS66 PF13007.7 gi|284164539|ref|YP_003402818.1| - 0.072 13.9 4.4 0.13 13.1 4.4 1.4 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain Thiamine_BP PF01910.17 gi|284164541|ref|YP_003402820.1| - 8.3e-20 70.5 0.3 9.5e-20 70.3 0.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein ASH PF15780.5 gi|284164542|ref|YP_003402821.1| - 1.2e-15 57.5 4.1 2e-09 37.5 0.0 4.5 3 2 1 4 4 4 2 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF1573 PF07610.11 gi|284164542|ref|YP_003402821.1| - 2.7e-10 40.2 0.1 0.0031 17.5 0.0 4.2 4 1 0 4 4 4 2 Protein of unknown function (DUF1573) CARDB PF07705.11 gi|284164542|ref|YP_003402821.1| - 4.3e-06 26.9 10.1 0.015 15.6 0.4 4.0 4 1 0 4 4 4 2 CARDB TMEM131_like PF12371.8 gi|284164542|ref|YP_003402821.1| - 2.7e-05 24.3 0.0 0.019 15.2 0.0 2.5 2 0 0 2 2 2 2 Transmembrane protein 131-like NPCBM_assoc PF10633.9 gi|284164542|ref|YP_003402821.1| - 0.0018 18.5 5.5 1.1 9.6 0.3 3.6 3 0 0 3 3 3 2 NPCBM-associated, NEW3 domain of alpha-galactosidase FixG_C PF11614.8 gi|284164542|ref|YP_003402821.1| - 0.009 16.2 0.7 4 7.7 0.0 4.1 4 0 0 4 4 4 1 IG-like fold at C-terminal of FixG, putative oxidoreductase DUF1616 PF07760.11 gi|284164542|ref|YP_003402821.1| - 0.012 15.0 0.2 0.055 12.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) DUF11 PF01345.18 gi|284164542|ref|YP_003402821.1| - 0.022 15.0 6.4 4.4 7.7 0.4 4.1 3 0 0 3 3 3 0 Domain of unknown function DUF11 MYCBPAP PF14646.6 gi|284164542|ref|YP_003402821.1| - 0.099 11.6 0.0 2.4 7.0 0.0 2.2 1 1 1 2 2 2 0 MYCBP-associated protein family HTH_20 PF12840.7 gi|284164545|ref|YP_003402824.1| - 0.032 14.3 0.0 0.042 13.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_S15 PF00312.22 gi|284164545|ref|YP_003402824.1| - 0.032 14.4 0.2 0.043 14.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S15 BAT PF15915.5 gi|284164546|ref|YP_003402825.1| - 1.2e-38 132.4 9.8 1.2e-38 132.4 9.8 2.0 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284164546|ref|YP_003402825.1| - 1.6e-19 69.4 0.0 4.2e-19 68.1 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|284164546|ref|YP_003402825.1| - 4.3e-13 49.8 2.4 5.8e-13 49.3 0.1 2.3 3 0 0 3 3 3 1 GAF domain PAS_4 PF08448.10 gi|284164546|ref|YP_003402825.1| - 2e-08 34.5 2.3 1e-07 32.2 0.7 2.7 3 0 0 3 3 2 1 PAS fold GAF PF01590.26 gi|284164546|ref|YP_003402825.1| - 8.8e-06 26.4 0.0 2.5e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|284164546|ref|YP_003402825.1| - 1.5e-05 24.9 0.1 4.7e-05 23.3 0.1 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|284164546|ref|YP_003402825.1| - 1.7e-05 24.8 0.0 4.6e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|284164546|ref|YP_003402825.1| - 3.8e-05 24.0 0.0 7.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.16 gi|284164546|ref|YP_003402825.1| - 0.00064 19.2 0.0 0.0031 17.0 0.0 2.2 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_9 PF13426.7 gi|284164546|ref|YP_003402825.1| - 0.00084 19.6 0.0 0.0036 17.5 0.0 2.0 2 0 0 2 2 2 1 PAS domain HTH_20 PF12840.7 gi|284164546|ref|YP_003402825.1| - 0.0056 16.7 0.0 0.024 14.7 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|284164546|ref|YP_003402825.1| - 0.0082 15.8 0.0 0.076 12.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284164546|ref|YP_003402825.1| - 0.019 14.5 0.0 0.04 13.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284164546|ref|YP_003402825.1| - 0.026 14.4 0.1 0.056 13.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF134 PF02001.16 gi|284164546|ref|YP_003402825.1| - 0.051 14.1 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 PAS_7 PF12860.7 gi|284164546|ref|YP_003402825.1| - 0.078 13.1 0.0 0.51 10.5 0.0 2.4 1 1 0 1 1 1 0 PAS fold HTH_Tnp_1_2 PF13022.6 gi|284164546|ref|YP_003402825.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase PAS_2 PF08446.11 gi|284164546|ref|YP_003402825.1| - 0.19 12.4 0.0 0.46 11.2 0.0 1.6 1 0 0 1 1 1 0 PAS fold HATPase_c PF02518.26 gi|284164547|ref|YP_003402826.1| - 1e-16 61.5 0.0 2.1e-16 60.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284164547|ref|YP_003402826.1| - 3.5e-07 30.2 1.4 2.2e-06 27.6 0.4 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284164547|ref|YP_003402826.1| - 2e-06 28.0 1.4 0.00018 21.7 1.4 2.7 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|284164547|ref|YP_003402826.1| - 2.3e-06 27.6 1.4 4.1e-06 26.8 0.1 2.1 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|284164547|ref|YP_003402826.1| - 0.04 14.0 0.0 0.19 11.8 0.0 2.2 2 0 0 2 2 2 0 PAS domain HalX PF08663.10 gi|284164548|ref|YP_003402827.1| - 8.2e-16 58.1 1.5 8.2e-16 58.1 1.5 2.1 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.24 gi|284164548|ref|YP_003402827.1| - 1.4e-14 54.2 0.1 2.2e-14 53.6 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain 5-nucleotidase PF06189.12 gi|284164548|ref|YP_003402827.1| - 0.031 13.2 0.0 0.039 12.9 0.0 1.2 1 0 0 1 1 1 0 5'-nucleotidase DUF727 PF05303.12 gi|284164548|ref|YP_003402827.1| - 0.082 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF727) HATPase_c PF02518.26 gi|284164549|ref|YP_003402828.1| - 1.9e-11 44.5 0.0 3.6e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284164549|ref|YP_003402828.1| - 1.8e-10 40.9 0.2 3.6e-10 39.9 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain dCache_1 PF02743.18 gi|284164549|ref|YP_003402828.1| - 1.3e-09 38.2 0.0 3e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 Cache domain CHASE4 PF05228.13 gi|284164549|ref|YP_003402828.1| - 0.05 13.8 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 CHASE4 domain SBP_bac_5 PF00496.22 gi|284164550|ref|YP_003402829.1| - 1.4e-40 139.4 0.5 5.7e-36 124.3 0.4 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Amelin PF05111.12 gi|284164552|ref|YP_003402831.1| - 0.32 10.1 1.3 0.41 9.7 1.3 1.1 1 0 0 1 1 1 0 Ameloblastin precursor (Amelin) Curlin_rpt PF07012.12 gi|284164553|ref|YP_003402832.1| - 4.5e-39 132.1 49.2 8.7e-07 28.9 4.6 11.0 1 1 9 10 10 10 10 Curlin associated repeat COX6C PF02937.15 gi|284164553|ref|YP_003402832.1| - 0.032 14.4 0.1 0.72 10.0 0.0 2.6 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VIc hnRNP_Q_AcD PF18360.1 gi|284164553|ref|YP_003402832.1| - 1.8 8.6 4.7 57 3.8 0.0 4.5 4 2 2 6 6 6 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Slp PF03843.13 gi|284164555|ref|YP_003402834.1| - 0.016 14.6 0.0 0.13 11.7 0.0 2.1 1 1 0 1 1 1 0 Outer membrane lipoprotein Slp family MerB PF03243.15 gi|284164557|ref|YP_003402836.1| - 0.014 15.5 0.8 0.014 15.5 0.8 1.1 1 0 0 1 1 1 0 Alkylmercury lyase RHH_1 PF01402.21 gi|284164558|ref|YP_003402837.1| - 4.1e-05 23.3 1.7 4.8e-05 23.1 0.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|284164558|ref|YP_003402837.1| - 0.0008 19.5 0.1 0.0019 18.3 0.0 1.7 1 1 1 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system Herpes_U30 PF04523.13 gi|284164558|ref|YP_003402837.1| - 0.025 12.5 0.1 0.027 12.4 0.1 1.0 1 0 0 1 1 1 0 Herpes virus tegument protein U30 Prefoldin_2 PF01920.20 gi|284164558|ref|YP_003402837.1| - 0.064 13.2 1.1 1.6 8.7 0.3 2.1 1 1 1 2 2 2 0 Prefoldin subunit HicB PF05534.12 gi|284164558|ref|YP_003402837.1| - 0.07 13.0 0.0 0.096 12.5 0.0 1.2 1 0 0 1 1 1 0 HicB family Thiolase_N PF00108.23 gi|284164561|ref|YP_003402840.1| - 3.5e-55 187.2 0.0 4.8e-55 186.7 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284164561|ref|YP_003402840.1| - 5e-07 29.4 0.1 1.1e-06 28.2 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284164561|ref|YP_003402840.1| - 0.086 12.4 1.9 0.32 10.5 1.9 1.9 1 1 0 1 1 1 0 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|284164562|ref|YP_003402841.1| - 1.9e-07 31.0 1.7 2.7e-07 30.5 1.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated TFIIS_C PF01096.18 gi|284164564|ref|YP_003402843.1| - 0.012 15.5 3.8 2 8.3 3.8 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|284164564|ref|YP_003402843.1| - 0.013 15.6 1.9 0.61 10.2 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284164564|ref|YP_003402843.1| - 0.022 14.3 0.6 0.025 14.1 0.6 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding DUF1610 PF07754.11 gi|284164564|ref|YP_003402843.1| - 0.073 13.1 2.8 0.073 13.1 2.8 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) YdjM PF04307.14 gi|284164566|ref|YP_003402845.1| - 1e-11 44.5 3.9 1.4e-11 44.0 3.9 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|284164566|ref|YP_003402845.1| - 0.16 12.0 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Zinc dependent phospholipase C DUF4184 PF13803.6 gi|284164566|ref|YP_003402845.1| - 1.5 8.5 5.8 1.5 8.5 0.2 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4184) YdjM PF04307.14 gi|284164567|ref|YP_003402846.1| - 3e-13 49.4 7.1 4.5e-13 48.9 7.1 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase AveC_like PF17198.4 gi|284164567|ref|YP_003402846.1| - 0.16 11.4 2.7 2.3 7.6 0.2 2.2 1 1 1 2 2 2 0 Spirocyclase AveC-like Trp_oprn_chp PF09534.10 gi|284164567|ref|YP_003402846.1| - 0.35 10.6 14.9 1.2 8.9 14.9 1.9 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) BPD_transp_2 PF02653.16 gi|284164567|ref|YP_003402846.1| - 1.3 8.2 8.5 5.1 6.2 8.5 1.8 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component FYVE PF01363.21 gi|284164570|ref|YP_003402849.1| - 0.02 15.0 0.3 0.025 14.7 0.3 1.2 1 0 0 1 1 1 0 FYVE zinc finger DZR PF12773.7 gi|284164570|ref|YP_003402849.1| - 0.024 14.6 0.3 0.033 14.2 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|284164570|ref|YP_003402849.1| - 0.043 14.1 0.7 0.063 13.5 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|284164570|ref|YP_003402849.1| - 0.055 13.5 1.4 0.12 12.3 1.4 1.6 1 1 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|284164570|ref|YP_003402849.1| - 0.062 13.3 0.3 0.062 13.3 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|284164570|ref|YP_003402849.1| - 0.081 12.9 2.3 0.38 10.7 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal Gin PF10764.9 gi|284164570|ref|YP_003402849.1| - 0.15 12.1 3.2 1.6 8.7 0.1 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin PhnA_Zn_Ribbon PF08274.12 gi|284164570|ref|YP_003402849.1| - 0.25 11.3 5.8 2.3 8.2 5.8 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF2694 PF10904.8 gi|284164572|ref|YP_003402851.1| - 0.096 12.8 0.6 0.29 11.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) NUDIX PF00293.28 gi|284164573|ref|YP_003402852.1| - 1.3e-14 54.3 0.1 1.9e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain DUF502 PF04367.13 gi|284164574|ref|YP_003402853.1| - 6.6e-17 61.3 0.1 1.1e-16 60.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Bac_luciferase PF00296.20 gi|284164575|ref|YP_003402854.1| - 0.0084 15.6 4.9 0.011 15.2 4.9 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.24 gi|284164576|ref|YP_003402855.1| - 2.1e-62 211.8 5.8 2.4e-62 211.6 5.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284164576|ref|YP_003402855.1| - 1e-08 34.8 0.1 0.00041 19.7 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284164576|ref|YP_003402855.1| - 1.8e-07 31.3 1.4 5.6e-07 29.7 1.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|284164576|ref|YP_003402855.1| - 5.1e-05 23.7 0.0 0.0001 22.7 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|284164576|ref|YP_003402855.1| - 0.00016 20.7 0.7 0.028 13.3 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase ApbA PF02558.16 gi|284164576|ref|YP_003402855.1| - 0.00021 21.0 0.3 0.0004 20.0 0.3 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|284164576|ref|YP_003402855.1| - 0.00054 19.3 0.5 0.001 18.4 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|284164576|ref|YP_003402855.1| - 0.00085 18.5 0.7 0.0058 15.8 0.5 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.18 gi|284164576|ref|YP_003402855.1| - 0.0013 18.7 0.1 0.0023 17.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|284164576|ref|YP_003402855.1| - 0.0021 17.2 4.2 0.0031 16.7 3.9 1.6 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|284164576|ref|YP_003402855.1| - 0.0034 16.8 2.1 0.0048 16.3 2.1 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284164576|ref|YP_003402855.1| - 0.0056 15.4 0.5 0.0094 14.7 0.2 1.4 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|284164576|ref|YP_003402855.1| - 0.0064 17.0 0.3 0.016 15.8 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284164576|ref|YP_003402855.1| - 0.011 14.9 0.3 0.023 14.0 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284164576|ref|YP_003402855.1| - 0.017 14.4 0.3 0.045 13.0 0.3 1.6 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.6 gi|284164576|ref|YP_003402855.1| - 0.02 14.9 1.6 5.8 6.9 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|284164576|ref|YP_003402855.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF3052 PF11253.8 gi|284164576|ref|YP_003402855.1| - 3.2 7.7 8.3 0.43 10.5 0.1 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF3052) HSP20 PF00011.21 gi|284164577|ref|YP_003402856.1| - 2.3e-07 30.9 0.0 3.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|284164577|ref|YP_003402856.1| - 0.0023 17.4 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DUF2752 PF10825.8 gi|284164578|ref|YP_003402857.1| - 0.018 15.1 0.4 0.026 14.6 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2752) DICT PF10069.9 gi|284164579|ref|YP_003402858.1| - 1.1e-05 25.1 0.0 2.1e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system Radical_SAM PF04055.21 gi|284164581|ref|YP_003402860.1| - 4.2e-12 46.8 0.0 1.5e-11 44.9 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|284164581|ref|YP_003402860.1| - 2e-05 24.8 0.0 5.3e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|284164581|ref|YP_003402860.1| - 2.7e-05 23.8 0.1 8e-05 22.3 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|284164581|ref|YP_003402860.1| - 0.0034 17.3 0.0 0.0097 15.9 0.0 1.7 1 0 0 1 1 1 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.6 gi|284164581|ref|YP_003402860.1| - 0.0098 16.5 0.0 0.025 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|284164581|ref|YP_003402860.1| - 0.078 13.1 0.1 0.33 11.1 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif TRAM PF01938.20 gi|284164582|ref|YP_003402861.1| - 1.8e-14 53.4 3.5 2.8e-14 52.9 3.5 1.3 1 0 0 1 1 1 1 TRAM domain PcrB PF01884.17 gi|284164585|ref|YP_003402864.1| - 2.5e-34 118.7 0.7 5e-34 117.7 0.7 1.4 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|284164585|ref|YP_003402864.1| - 3.5e-05 23.4 0.0 6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|284164585|ref|YP_003402864.1| - 0.051 12.7 0.0 0.095 11.8 0.0 1.4 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|284164585|ref|YP_003402864.1| - 0.12 11.5 0.0 7.5 5.6 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase DHO_dh PF01180.21 gi|284164585|ref|YP_003402864.1| - 0.14 11.4 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase CxxCxxCC PF03692.15 gi|284164586|ref|YP_003402865.1| - 5.3e-14 52.7 2.3 8.6e-14 52.0 2.3 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.17 gi|284164586|ref|YP_003402865.1| - 0.027 14.8 1.5 0.13 12.6 0.0 2.2 2 0 0 2 2 2 0 High potential iron-sulfur protein Lactamase_B PF00753.27 gi|284164587|ref|YP_003402866.1| - 4.6e-17 62.7 7.0 6.5e-17 62.2 7.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284164587|ref|YP_003402866.1| - 0.00015 21.4 0.5 0.00027 20.5 0.5 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain BLACT_WH PF17778.1 gi|284164587|ref|YP_003402866.1| - 0.0015 18.4 0.1 0.0036 17.2 0.1 1.7 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_3 PF13483.6 gi|284164587|ref|YP_003402866.1| - 0.003 17.5 0.1 0.0042 17.0 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|284164587|ref|YP_003402866.1| - 0.0038 16.7 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF1488 PF07369.11 gi|284164587|ref|YP_003402866.1| - 0.13 12.3 0.2 0.31 11.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) HTH_24 PF13412.6 gi|284164588|ref|YP_003402867.1| - 0.00016 21.2 0.0 0.00025 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284164588|ref|YP_003402867.1| - 0.0012 18.7 0.1 0.0018 18.1 0.1 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284164588|ref|YP_003402867.1| - 0.0014 18.2 0.1 0.0025 17.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|284164588|ref|YP_003402867.1| - 0.002 18.2 0.3 0.0033 17.5 0.3 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|284164588|ref|YP_003402867.1| - 0.029 14.2 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_12 PF08461.10 gi|284164588|ref|YP_003402867.1| - 0.044 13.7 0.4 0.33 10.9 0.1 2.4 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|284164588|ref|YP_003402867.1| - 0.084 12.8 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Methyltransf_25 PF13649.6 gi|284164589|ref|YP_003402868.1| - 9.4e-24 84.0 0.1 1.4e-23 83.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164589|ref|YP_003402868.1| - 4.4e-23 81.7 0.0 7.3e-23 81.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164589|ref|YP_003402868.1| - 6.2e-18 65.0 0.0 9.1e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164589|ref|YP_003402868.1| - 2.3e-15 56.6 0.0 3e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|284164589|ref|YP_003402868.1| - 2.7e-14 53.7 0.0 4.6e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164589|ref|YP_003402868.1| - 8.1e-13 48.5 0.0 1.1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|284164589|ref|YP_003402868.1| - 1.9e-06 27.6 0.0 4.1e-06 26.5 0.0 1.6 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|284164589|ref|YP_003402868.1| - 2.3e-05 24.0 0.0 5.8e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.18 gi|284164589|ref|YP_003402868.1| - 8.9e-05 22.2 0.0 0.00022 21.0 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|284164589|ref|YP_003402868.1| - 0.00022 20.3 0.0 0.00029 19.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|284164589|ref|YP_003402868.1| - 0.0013 17.9 0.0 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.11 gi|284164589|ref|YP_003402868.1| - 0.0014 18.3 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|284164589|ref|YP_003402868.1| - 0.0021 17.5 0.0 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase TehB PF03848.14 gi|284164589|ref|YP_003402868.1| - 0.0034 16.8 0.0 0.0044 16.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_20 PF12147.8 gi|284164589|ref|YP_003402868.1| - 0.0042 16.3 0.0 0.0056 15.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase TPMT PF05724.11 gi|284164589|ref|YP_003402868.1| - 0.0057 16.3 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.20 gi|284164589|ref|YP_003402868.1| - 0.0065 15.8 0.0 0.0086 15.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.11 gi|284164589|ref|YP_003402868.1| - 0.0086 15.1 0.1 0.019 14.0 0.0 1.5 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.12 gi|284164589|ref|YP_003402868.1| - 0.023 14.5 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_18 PF12847.7 gi|284164589|ref|YP_003402868.1| - 0.025 14.5 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|284164589|ref|YP_003402868.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|284164589|ref|YP_003402868.1| - 0.088 12.8 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|284164589|ref|YP_003402868.1| - 0.17 12.0 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Glycos_transf_2 PF00535.26 gi|284164590|ref|YP_003402869.1| - 5.6e-17 62.1 0.1 8.9e-17 61.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284164590|ref|YP_003402869.1| - 1.8e-08 34.6 0.6 2.1e-05 24.5 0.1 2.5 2 1 1 3 3 3 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|284164590|ref|YP_003402869.1| - 0.00099 18.7 0.1 0.0024 17.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 ECH_1 PF00378.20 gi|284164591|ref|YP_003402870.1| - 2e-57 194.4 0.0 2.3e-57 194.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284164591|ref|YP_003402870.1| - 1.1e-25 90.8 0.0 2.2e-21 76.7 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase HTH_24 PF13412.6 gi|284164592|ref|YP_003402871.1| - 4.2e-10 39.0 0.0 9.1e-10 37.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284164592|ref|YP_003402871.1| - 2.1e-09 37.1 0.1 1e-08 34.9 0.2 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|284164592|ref|YP_003402871.1| - 2.7e-07 31.0 0.0 1.2e-06 28.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|284164592|ref|YP_003402871.1| - 2.7e-07 30.4 0.0 5.7e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|284164592|ref|YP_003402871.1| - 2e-05 24.4 0.0 4.5e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|284164592|ref|YP_003402871.1| - 0.00013 21.9 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|284164592|ref|YP_003402871.1| - 0.00018 21.3 0.0 0.00034 20.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284164592|ref|YP_003402871.1| - 0.0002 21.1 0.0 0.00052 19.8 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284164592|ref|YP_003402871.1| - 0.00022 21.2 0.1 0.00068 19.7 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|284164592|ref|YP_003402871.1| - 0.00022 21.1 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Mnd1 PF03962.15 gi|284164592|ref|YP_003402871.1| - 0.00045 20.5 0.1 0.0011 19.2 0.1 1.6 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_13 PF11972.8 gi|284164592|ref|YP_003402871.1| - 0.00051 20.1 0.1 0.0012 18.9 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|284164592|ref|YP_003402871.1| - 0.00092 19.1 0.1 0.0019 18.0 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.27 gi|284164592|ref|YP_003402871.1| - 0.0013 18.6 0.0 0.0032 17.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|284164592|ref|YP_003402871.1| - 0.0033 17.6 0.1 0.0099 16.1 0.1 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|284164592|ref|YP_003402871.1| - 0.0051 17.1 0.0 0.02 15.2 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator SMC_ScpB PF04079.16 gi|284164592|ref|YP_003402871.1| - 0.0062 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB GntR PF00392.21 gi|284164592|ref|YP_003402871.1| - 0.011 15.4 0.1 0.032 13.9 0.2 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|284164592|ref|YP_003402871.1| - 0.022 14.5 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_12 PF08461.10 gi|284164592|ref|YP_003402871.1| - 0.024 14.6 0.0 0.054 13.5 0.0 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HemN_C PF06969.16 gi|284164592|ref|YP_003402871.1| - 0.026 14.6 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 HemN C-terminal domain DUF4364 PF14277.6 gi|284164592|ref|YP_003402871.1| - 0.027 14.2 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Rio2_N PF09202.11 gi|284164592|ref|YP_003402871.1| - 0.049 13.9 0.0 0.099 12.9 0.0 1.5 1 0 0 1 1 1 0 Rio2, N-terminal LacI PF00356.21 gi|284164592|ref|YP_003402871.1| - 0.059 13.2 0.0 0.45 10.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_10 PF04967.12 gi|284164592|ref|YP_003402871.1| - 0.08 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|284164592|ref|YP_003402871.1| - 0.088 12.7 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.6 gi|284164592|ref|YP_003402871.1| - 0.093 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_3 PF01381.22 gi|284164592|ref|YP_003402871.1| - 0.15 12.1 0.1 0.29 11.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix RepL PF05732.11 gi|284164592|ref|YP_003402871.1| - 0.17 11.3 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_28 PF13518.6 gi|284164592|ref|YP_003402871.1| - 0.23 11.6 0.9 0.4 10.9 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Exosortase_EpsH PF09721.10 gi|284164593|ref|YP_003402872.1| - 3e-14 53.2 19.4 5.8e-14 52.3 19.4 1.5 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Metallophos PF00149.28 gi|284164594|ref|YP_003402873.1| - 3.6e-07 30.9 0.2 6.9e-07 30.0 0.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase EamA PF00892.20 gi|284164595|ref|YP_003402874.1| - 1.8e-09 37.9 20.1 2e-09 37.7 20.1 1.0 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 gi|284164595|ref|YP_003402874.1| - 0.081 13.0 4.7 0.11 12.5 4.2 1.4 1 1 0 1 1 1 0 Putative transmembrane family 234 PTPS_related PF10131.9 gi|284164595|ref|YP_003402874.1| - 0.11 10.8 12.2 0.096 11.0 10.1 1.7 1 1 1 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Amino_oxidase PF01593.24 gi|284164596|ref|YP_003402875.1| - 2.9e-45 155.4 1.6 2.1e-44 152.6 1.6 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|284164596|ref|YP_003402875.1| - 4.9e-14 52.3 0.2 1.5e-13 50.7 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|284164596|ref|YP_003402875.1| - 2.9e-13 50.1 1.5 6.2e-06 26.0 0.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284164596|ref|YP_003402875.1| - 5.1e-08 32.5 0.7 0.00035 19.9 0.4 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|284164596|ref|YP_003402875.1| - 5.4e-08 32.5 1.5 0.00017 20.9 2.1 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|284164596|ref|YP_003402875.1| - 1.3e-05 24.1 0.2 0.002 16.9 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|284164596|ref|YP_003402875.1| - 7.2e-05 22.0 3.1 0.00041 19.5 3.4 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|284164596|ref|YP_003402875.1| - 0.0002 21.9 1.3 0.0052 17.3 0.6 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284164596|ref|YP_003402875.1| - 0.0049 16.3 5.5 0.0075 15.7 5.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|284164596|ref|YP_003402875.1| - 0.0081 16.2 2.4 1.2 9.1 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.17 gi|284164596|ref|YP_003402875.1| - 0.0095 15.2 0.4 0.015 14.5 0.4 1.2 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|284164596|ref|YP_003402875.1| - 0.011 15.0 0.2 0.022 14.0 0.1 1.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|284164596|ref|YP_003402875.1| - 0.05 12.7 3.1 0.034 13.2 1.5 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A FMO-like PF00743.19 gi|284164596|ref|YP_003402875.1| - 0.057 11.8 0.0 0.076 11.4 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 gi|284164596|ref|YP_003402875.1| - 0.15 11.0 0.3 0.3 10.1 0.3 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein Gluconate_2-dh3 PF13618.6 gi|284164597|ref|YP_003402876.1| - 4.4e-43 146.8 0.9 5.1e-43 146.6 0.2 1.5 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 DUF1515 PF07439.11 gi|284164597|ref|YP_003402876.1| - 0.18 11.8 0.0 0.35 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) GMC_oxred_C PF05199.13 gi|284164598|ref|YP_003402877.1| - 8.5e-19 68.5 0.0 1.6e-18 67.6 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|284164598|ref|YP_003402877.1| - 4.8e-11 42.6 0.0 1.6e-08 34.3 0.0 2.4 3 0 0 3 3 3 2 GMC oxidoreductase Shikimate_DH PF01488.20 gi|284164598|ref|YP_003402877.1| - 0.043 13.9 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|284164598|ref|YP_003402877.1| - 0.13 12.6 0.1 0.47 10.7 0.1 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lactamase_B PF00753.27 gi|284164599|ref|YP_003402878.1| - 3.1e-24 86.1 10.3 3.9e-24 85.8 10.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284164599|ref|YP_003402878.1| - 1.1e-07 31.6 0.5 1.5e-07 31.1 0.5 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ABC_tran PF00005.27 gi|284164600|ref|YP_003402879.1| - 9.1e-30 104.0 0.0 1.5e-29 103.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164600|ref|YP_003402879.1| - 1.2e-10 41.7 0.8 1.7e-05 24.8 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284164600|ref|YP_003402879.1| - 0.0014 18.1 0.1 0.039 13.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|284164600|ref|YP_003402879.1| - 0.0019 18.7 0.1 0.0034 17.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284164600|ref|YP_003402879.1| - 0.0019 17.9 0.1 0.0042 16.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284164600|ref|YP_003402879.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284164600|ref|YP_003402879.1| - 0.017 15.4 0.0 0.06 13.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|284164600|ref|YP_003402879.1| - 0.023 14.3 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284164600|ref|YP_003402879.1| - 0.055 13.9 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|284164600|ref|YP_003402879.1| - 0.081 12.7 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|284164600|ref|YP_003402879.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|284164600|ref|YP_003402879.1| - 0.19 11.3 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|284164600|ref|YP_003402879.1| - 0.24 11.0 0.0 0.36 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|284164601|ref|YP_003402880.1| - 5.3e-30 104.7 0.0 6.7e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164601|ref|YP_003402880.1| - 2.7e-06 27.4 0.9 2.9e-05 24.0 0.1 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|284164601|ref|YP_003402880.1| - 5.1e-06 26.3 0.5 1.1e-05 25.2 0.5 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|284164601|ref|YP_003402880.1| - 7.1e-05 23.4 0.2 0.00015 22.4 0.1 1.5 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|284164601|ref|YP_003402880.1| - 0.0005 19.7 0.0 0.00098 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Terminase_GpA PF05876.12 gi|284164601|ref|YP_003402880.1| - 0.0039 15.8 0.0 0.0052 15.4 0.0 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) SMC_N PF02463.19 gi|284164601|ref|YP_003402880.1| - 0.0066 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Gln-synt_C-ter PF18318.1 gi|284164601|ref|YP_003402880.1| - 0.038 13.8 0.0 0.06 13.2 0.0 1.2 1 0 0 1 1 1 0 Glutamine synthetase C-terminal domain NB-ARC PF00931.22 gi|284164601|ref|YP_003402880.1| - 0.05 12.8 0.0 0.16 11.1 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|284164601|ref|YP_003402880.1| - 0.053 14.0 0.0 0.36 11.3 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|284164601|ref|YP_003402880.1| - 0.068 13.3 0.1 0.096 12.8 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|284164601|ref|YP_003402880.1| - 0.078 12.7 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284164601|ref|YP_003402880.1| - 0.085 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|284164601|ref|YP_003402880.1| - 0.095 13.1 0.2 0.17 12.2 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|284164601|ref|YP_003402880.1| - 0.17 11.9 0.0 3.7 7.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.16 gi|284164602|ref|YP_003402881.1| - 1.9e-39 135.4 29.5 1.9e-39 135.4 29.5 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component PIG-Y PF15159.6 gi|284164602|ref|YP_003402881.1| - 0.11 13.4 0.3 0.11 13.4 0.3 3.3 3 1 0 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y TNFR_16_TM PF18422.1 gi|284164602|ref|YP_003402881.1| - 0.36 10.8 2.0 1.7 8.7 2.0 2.1 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain BPD_transp_2 PF02653.16 gi|284164603|ref|YP_003402882.1| - 1.3e-33 116.3 42.8 1.6e-33 116.0 42.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|284164604|ref|YP_003402883.1| - 2e-43 149.4 0.9 2.5e-43 149.1 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|284164604|ref|YP_003402883.1| - 1.3e-22 80.4 0.0 2.1e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|284164604|ref|YP_003402883.1| - 1.8e-19 69.9 0.4 9.4e-19 67.6 0.4 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|284164604|ref|YP_003402883.1| - 0.013 15.3 5.7 0.027 14.3 5.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.27 gi|284164605|ref|YP_003402884.1| - 3.4e-25 89.2 11.1 3.4e-25 89.2 11.1 1.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284164605|ref|YP_003402884.1| - 0.0026 17.3 1.3 0.0026 17.3 1.3 2.3 2 1 0 2 2 2 1 Beta-lactamase superfamily domain RbsD_FucU PF05025.13 gi|284164605|ref|YP_003402884.1| - 0.035 14.5 0.0 0.22 11.9 0.0 2.2 2 0 0 2 2 2 0 RbsD / FucU transport protein family GatB_N PF02934.15 gi|284164606|ref|YP_003402885.1| - 3.7e-99 331.6 0.0 5.5e-99 331.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|284164606|ref|YP_003402885.1| - 4.6e-41 140.2 0.0 8.4e-41 139.3 0.0 1.4 1 0 0 1 1 1 1 GatB domain HalOD1 PF18545.1 gi|284164607|ref|YP_003402886.1| - 8.2e-21 74.1 0.5 1.4e-20 73.3 0.4 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 BAT PF15915.5 gi|284164608|ref|YP_003402887.1| - 3.6e-32 111.4 0.9 5.7e-32 110.8 0.9 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284164608|ref|YP_003402887.1| - 5e-20 71.0 0.1 8.8e-20 70.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_11 PF08279.12 gi|284164608|ref|YP_003402887.1| - 0.015 15.3 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.16 gi|284164608|ref|YP_003402887.1| - 0.018 14.5 0.1 0.043 13.3 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|284164608|ref|YP_003402887.1| - 0.073 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284164608|ref|YP_003402887.1| - 0.088 12.9 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PQQ_2 PF13360.6 gi|284164609|ref|YP_003402888.1| - 1.7e-29 103.1 6.5 8.3e-20 71.4 4.0 4.1 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|284164609|ref|YP_003402888.1| - 8.8e-13 47.5 3.9 0.021 14.8 0.0 6.9 7 0 0 7 7 7 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|284164609|ref|YP_003402888.1| - 1.2e-08 35.1 18.8 0.075 13.6 0.1 7.7 7 2 0 7 7 7 4 PQQ-like domain MsyB PF13984.6 gi|284164609|ref|YP_003402888.1| - 0.14 12.5 0.2 0.9 9.9 0.1 2.3 3 0 0 3 3 3 0 MsyB protein AMP-binding PF00501.28 gi|284164610|ref|YP_003402889.1| - 3.1e-73 246.8 0.0 4.6e-73 246.2 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164610|ref|YP_003402889.1| - 1.4e-23 83.6 0.1 2.8e-23 82.7 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|284164610|ref|YP_003402889.1| - 1.5e-05 24.8 0.0 1.5e-05 24.8 0.0 3.8 3 1 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus adh_short_C2 PF13561.6 gi|284164611|ref|YP_003402890.1| - 7.5e-34 117.3 0.0 1.2e-33 116.6 0.0 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284164611|ref|YP_003402890.1| - 5.3e-32 110.9 0.0 6.6e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|284164611|ref|YP_003402890.1| - 0.0019 17.7 0.1 0.0028 17.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|284164611|ref|YP_003402890.1| - 0.0054 16.7 0.2 0.01 15.7 0.1 1.6 2 0 0 2 2 2 1 KR domain GDP_Man_Dehyd PF16363.5 gi|284164611|ref|YP_003402890.1| - 0.035 13.5 0.1 0.049 13.0 0.1 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|284164611|ref|YP_003402890.1| - 0.073 12.2 0.0 0.15 11.2 0.0 1.4 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein Methyltransf_25 PF13649.6 gi|284164611|ref|YP_003402890.1| - 0.094 13.4 0.1 0.17 12.6 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain VCBS PF13517.6 gi|284164611|ref|YP_003402890.1| - 0.66 10.6 4.3 0.51 11.0 0.7 2.3 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella HTH_10 PF04967.12 gi|284164612|ref|YP_003402891.1| - 2.5e-15 56.0 0.1 4e-15 55.4 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284164612|ref|YP_003402891.1| - 0.002 18.0 0.6 0.0039 17.1 0.2 1.7 1 1 0 1 1 1 1 GAF and HTH_10 associated domain DUF1854 PF08909.11 gi|284164612|ref|YP_003402891.1| - 0.089 12.6 0.0 4.8 7.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1854) PhzC-PhzF PF02567.16 gi|284164613|ref|YP_003402892.1| - 6.3e-70 235.8 0.0 7.1e-70 235.7 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|284164613|ref|YP_003402892.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Proline racemase ThiC_Rad_SAM PF01964.18 gi|284164614|ref|YP_003402893.1| - 4.1e-193 641.9 0.0 4.7e-193 641.7 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family HalOD1 PF18545.1 gi|284164615|ref|YP_003402894.1| - 3.4e-24 84.9 0.5 4e-24 84.7 0.5 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Pribosyltran PF00156.27 gi|284164616|ref|YP_003402895.1| - 4.7e-17 62.0 0.0 6.6e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|284164616|ref|YP_003402895.1| - 0.023 14.1 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Methyltransf_25 PF13649.6 gi|284164617|ref|YP_003402896.1| - 4.2e-21 75.5 0.1 7.3e-21 74.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164617|ref|YP_003402896.1| - 8.4e-21 74.4 0.1 1.8e-20 73.4 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164617|ref|YP_003402896.1| - 3.1e-16 59.6 0.0 4e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164617|ref|YP_003402896.1| - 4.9e-14 52.4 0.0 6.3e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164617|ref|YP_003402896.1| - 1.7e-09 38.3 0.0 2.6e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164617|ref|YP_003402896.1| - 3.5e-07 29.8 0.0 5.5e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|284164617|ref|YP_003402896.1| - 2.4e-06 27.0 0.0 3e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|284164617|ref|YP_003402896.1| - 2.9e-06 27.0 0.0 4e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|284164617|ref|YP_003402896.1| - 0.00024 21.0 0.0 0.00047 20.1 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|284164617|ref|YP_003402896.1| - 0.0032 17.0 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|284164617|ref|YP_003402896.1| - 0.0068 15.7 0.1 0.0096 15.2 0.1 1.3 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_4 PF02390.17 gi|284164617|ref|YP_003402896.1| - 0.024 14.1 0.0 0.66 9.4 0.0 2.6 2 1 1 3 3 3 0 Putative methyltransferase Methyltransf_29 PF03141.16 gi|284164617|ref|YP_003402896.1| - 0.098 11.2 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase CheR PF01739.18 gi|284164617|ref|YP_003402896.1| - 0.2 11.1 0.0 0.72 9.3 0.0 1.9 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain DUF866 PF05907.13 gi|284164618|ref|YP_003402897.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.0 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Spo0M PF07070.11 gi|284164619|ref|YP_003402898.1| - 3.6e-70 235.8 0.0 4.2e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 SpoOM protein MatE PF01554.18 gi|284164620|ref|YP_003402899.1| - 4.1e-55 185.8 38.0 2.8e-29 101.8 12.2 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|284164620|ref|YP_003402899.1| - 9.1e-12 45.3 21.1 1.3e-10 41.5 8.7 4.0 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|284164620|ref|YP_003402899.1| - 8e-07 28.0 21.4 3.3e-05 22.7 21.4 2.3 1 1 0 1 1 1 1 Lipid II flippase MurJ Peptidase_M20 PF01546.28 gi|284164620|ref|YP_003402899.1| - 0.19 11.4 0.2 0.35 10.6 0.2 1.3 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 DUF4191 PF13829.6 gi|284164620|ref|YP_003402899.1| - 2.3 7.5 4.4 0.59 9.4 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) SMC_ScpA PF02616.14 gi|284164622|ref|YP_003402901.1| - 3.1e-14 53.5 0.0 6.2e-10 39.4 0.0 2.4 2 0 0 2 2 2 2 Segregation and condensation protein ScpA SMC_N PF02463.19 gi|284164623|ref|YP_003402902.1| - 3.6e-45 154.1 70.2 1.7e-44 151.8 70.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|284164623|ref|YP_003402902.1| - 3.3e-30 104.8 0.0 8.2e-30 103.5 0.0 1.8 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_21 PF13304.6 gi|284164623|ref|YP_003402902.1| - 7.2e-11 42.4 9.1 7.5e-07 29.3 0.0 5.0 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284164623|ref|YP_003402902.1| - 1.5e-07 31.0 0.4 7e-07 28.9 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|284164623|ref|YP_003402902.1| - 2.3e-07 30.0 151.8 0.031 13.2 24.7 8.4 2 2 5 8 8 8 6 Spc7 kinetochore protein AAA_13 PF13166.6 gi|284164623|ref|YP_003402902.1| - 2.3e-07 29.9 115.7 0.017 13.8 24.6 6.2 4 2 2 6 6 6 5 AAA domain DUF3584 PF12128.8 gi|284164623|ref|YP_003402902.1| - 8.5e-06 23.6 13.3 8.5e-06 23.6 13.3 4.4 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) Atg14 PF10186.9 gi|284164623|ref|YP_003402902.1| - 3.8e-05 22.9 101.8 0.027 13.6 11.4 7.8 3 2 4 7 7 7 3 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|284164623|ref|YP_003402902.1| - 0.00073 18.9 129.8 0.021 14.2 10.5 8.1 3 2 4 8 8 8 5 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|284164623|ref|YP_003402902.1| - 0.001 19.1 79.8 0.0088 16.1 6.2 9.6 3 2 3 9 9 9 5 Protein of unknown function (DUF1664) APG6_N PF17675.1 gi|284164623|ref|YP_003402902.1| - 0.0011 19.5 191.2 0.016 15.7 24.3 9.3 3 2 5 8 8 7 3 Apg6 coiled-coil region UPF0242 PF06785.11 gi|284164623|ref|YP_003402902.1| - 0.002 18.3 145.4 0.01 16.0 1.9 8.0 3 2 4 8 8 8 3 Uncharacterised protein family (UPF0242) N-terminus DUF4407 PF14362.6 gi|284164623|ref|YP_003402902.1| - 0.0028 17.1 110.4 0.038 13.4 22.5 6.4 2 2 3 5 5 5 3 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|284164623|ref|YP_003402902.1| - 0.0029 17.8 5.9 0.0029 17.8 5.9 7.6 3 2 6 9 9 9 3 Fibrinogen alpha/beta chain family ATG16 PF08614.11 gi|284164623|ref|YP_003402902.1| - 0.0043 17.3 22.3 0.0043 17.3 22.3 9.4 2 2 9 11 11 9 3 Autophagy protein 16 (ATG16) AAA_15 PF13175.6 gi|284164623|ref|YP_003402902.1| - 0.0055 16.5 71.6 0.0043 16.8 37.5 5.4 2 2 0 2 2 1 1 AAA ATPase domain Rootletin PF15035.6 gi|284164623|ref|YP_003402902.1| - 0.0073 16.3 2.0 0.0073 16.3 2.0 6.5 2 2 4 6 6 3 1 Ciliary rootlet component, centrosome cohesion Apolipoprotein PF01442.18 gi|284164623|ref|YP_003402902.1| - 0.015 15.1 0.3 0.015 15.1 0.3 6.5 3 2 3 6 6 5 0 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.12 gi|284164623|ref|YP_003402902.1| - 0.018 15.1 33.0 2.3 8.2 0.2 7.2 2 2 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fez1 PF06818.15 gi|284164623|ref|YP_003402902.1| - 0.047 14.1 131.3 0.39 11.1 18.9 7.5 2 2 4 6 6 6 0 Fez1 Laminin_II PF06009.12 gi|284164623|ref|YP_003402902.1| - 0.075 13.1 78.4 0.13 12.3 6.8 8.6 4 2 5 9 9 9 0 Laminin Domain II DUF4201 PF13870.6 gi|284164623|ref|YP_003402902.1| - 0.33 10.7 112.1 0.013 15.2 12.4 8.3 3 2 3 8 8 7 0 Domain of unknown function (DUF4201) AAA_22 PF13401.6 gi|284164623|ref|YP_003402902.1| - 0.49 10.7 5.4 5.4 7.3 0.0 4.3 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|284164623|ref|YP_003402902.1| - 0.71 10.3 155.3 3.8e+02 1.4 16.1 8.9 2 2 1 3 3 2 0 AAA domain CHASE7 PF17151.4 gi|284164623|ref|YP_003402902.1| - 0.78 9.3 11.9 0.072 12.7 5.3 2.7 2 1 1 3 3 3 0 Periplasmic sensor domain ABC_tran PF00005.27 gi|284164623|ref|YP_003402902.1| - 0.8 10.2 0.0 0.8 10.2 0.0 6.2 4 2 0 4 4 2 0 ABC transporter DUF724 PF05266.14 gi|284164623|ref|YP_003402902.1| - 1.1 9.0 118.5 0.034 14.0 14.8 8.0 3 2 4 8 8 8 0 Protein of unknown function (DUF724) EzrA PF06160.12 gi|284164623|ref|YP_003402902.1| - 1.2 7.2 126.6 0.0038 15.5 20.4 5.8 3 2 2 5 5 5 0 Septation ring formation regulator, EzrA NPV_P10 PF05531.12 gi|284164623|ref|YP_003402902.1| - 2.3 8.7 56.8 0.86 10.1 2.0 10.8 6 3 4 11 11 10 0 Nucleopolyhedrovirus P10 protein DUF5082 PF16888.5 gi|284164623|ref|YP_003402902.1| - 3.2 8.1 101.5 1.1 9.5 14.6 8.5 4 2 3 7 7 7 0 Domain of unknown function (DUF5082) SlyX PF04102.12 gi|284164624|ref|YP_003402903.1| - 8.4e-05 23.1 4.1 0.00015 22.3 4.1 1.7 1 1 0 1 1 1 1 SlyX Tropomyosin PF00261.20 gi|284164624|ref|YP_003402903.1| - 0.00017 21.1 1.3 0.00017 21.1 1.3 1.7 2 0 0 2 2 2 1 Tropomyosin Striatin PF08232.12 gi|284164624|ref|YP_003402903.1| - 0.013 16.1 0.8 0.017 15.7 0.8 1.1 1 0 0 1 1 1 0 Striatin family FlaC_arch PF05377.11 gi|284164624|ref|YP_003402903.1| - 0.046 14.1 1.2 0.08 13.3 1.2 1.4 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) IFP_35_N PF07334.13 gi|284164624|ref|YP_003402903.1| - 0.12 12.4 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus bZIP_1 PF00170.21 gi|284164624|ref|YP_003402903.1| - 0.19 11.9 0.9 0.27 11.4 0.9 1.2 1 0 0 1 1 1 0 bZIP transcription factor DUF4407 PF14362.6 gi|284164624|ref|YP_003402903.1| - 0.19 11.0 1.7 0.22 10.9 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PspB PF06667.12 gi|284164624|ref|YP_003402903.1| - 0.19 11.8 1.3 0.5 10.4 1.3 1.7 1 1 0 1 1 1 0 Phage shock protein B TMF_DNA_bd PF12329.8 gi|284164624|ref|YP_003402903.1| - 0.83 9.7 5.1 0.16 12.0 1.4 1.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding LPP PF04728.13 gi|284164624|ref|YP_003402903.1| - 1.9 9.0 0.0 1.9 9.0 0.0 2.2 2 0 0 2 2 2 0 Lipoprotein leucine-zipper TFIIS_C PF01096.18 gi|284164625|ref|YP_003402904.1| - 1.6e-18 66.3 4.8 1.6e-18 66.3 4.8 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|284164625|ref|YP_003402904.1| - 1.9e-08 34.0 1.3 1.9e-08 34.0 1.3 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|284164625|ref|YP_003402904.1| - 2.1e-05 24.4 6.1 0.005 16.8 0.8 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.7 gi|284164625|ref|YP_003402904.1| - 0.0002 21.3 9.6 0.011 15.8 0.5 2.8 2 1 0 2 2 2 2 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|284164625|ref|YP_003402904.1| - 0.00023 20.6 10.0 0.0032 16.9 0.7 3.6 3 1 0 3 3 3 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|284164625|ref|YP_003402904.1| - 0.00024 20.4 10.8 0.1 12.0 0.2 3.3 3 1 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284164625|ref|YP_003402904.1| - 0.00073 19.4 10.8 0.032 14.2 0.9 2.5 2 1 1 3 3 3 2 Putative transposase DNA-binding domain FdhE PF04216.12 gi|284164625|ref|YP_003402904.1| - 0.006 16.5 1.8 0.0075 16.2 0.2 1.8 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation Ribosomal_L37ae PF01780.19 gi|284164625|ref|YP_003402904.1| - 0.043 13.9 5.6 0.062 13.4 0.2 2.6 1 1 0 2 2 2 0 Ribosomal L37ae protein family DUF3797 PF12677.7 gi|284164625|ref|YP_003402904.1| - 0.058 13.3 0.1 0.058 13.3 0.1 2.5 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) ArfGap PF01412.18 gi|284164625|ref|YP_003402904.1| - 0.062 13.4 0.4 0.062 13.4 0.4 2.1 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf HalOD2 PF18547.1 gi|284164625|ref|YP_003402904.1| - 0.07 13.0 12.3 0.17 11.8 0.1 3.9 3 1 1 4 4 4 0 Halobacterial output domain 2 Nudix_N_2 PF14803.6 gi|284164625|ref|YP_003402904.1| - 0.094 12.6 12.6 2 8.4 3.2 3.8 3 1 0 3 3 3 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|284164625|ref|YP_003402904.1| - 0.14 12.2 12.2 0.21 11.6 2.8 3.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon TackOD1 PF18551.1 gi|284164625|ref|YP_003402904.1| - 0.14 11.8 6.3 2.4 7.8 6.3 2.5 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Lar_restr_allev PF14354.6 gi|284164625|ref|YP_003402904.1| - 0.17 12.3 9.5 0.58 10.6 0.8 2.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-RRN7 PF11781.8 gi|284164625|ref|YP_003402904.1| - 0.22 11.2 11.8 17 5.2 0.1 4.1 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_UBZ PF18439.1 gi|284164625|ref|YP_003402904.1| - 0.24 11.0 9.3 1.3 8.7 0.1 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|284164625|ref|YP_003402904.1| - 0.27 11.2 9.7 6 6.9 4.1 3.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284164625|ref|YP_003402904.1| - 0.3 11.3 11.6 0.7 10.1 0.1 3.9 3 1 0 3 3 3 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|284164625|ref|YP_003402904.1| - 0.33 11.2 11.2 4.7 7.5 0.7 4.0 4 1 0 4 4 4 0 C4-type zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|284164625|ref|YP_003402904.1| - 0.33 10.9 9.4 3 7.9 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbons zf-IS66 PF13005.7 gi|284164625|ref|YP_003402904.1| - 0.35 11.3 6.7 8.4 6.9 0.1 3.8 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-UBP PF02148.19 gi|284164625|ref|YP_003402904.1| - 0.41 11.0 5.6 2.3 8.6 0.3 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DUF2387 PF09526.10 gi|284164625|ref|YP_003402904.1| - 0.5 10.5 7.9 3.8 7.7 2.6 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Prok-RING_1 PF14446.6 gi|284164625|ref|YP_003402904.1| - 0.59 10.1 7.6 1.5 8.8 0.7 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|284164625|ref|YP_003402904.1| - 0.72 9.6 15.4 0.79 9.5 0.2 3.9 3 1 0 4 4 4 0 zinc-ribbon domain DUF35_N PF12172.8 gi|284164625|ref|YP_003402904.1| - 1.1 9.2 0.1 1.1 9.2 0.1 3.3 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rdx PF10262.9 gi|284164625|ref|YP_003402904.1| - 1.1 9.5 4.0 37 4.6 0.0 3.2 3 1 1 4 4 4 0 Rdx family zf-ACC PF17848.1 gi|284164625|ref|YP_003402904.1| - 1.3 9.2 15.2 4.2 7.5 0.3 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain DUF3268 PF11672.8 gi|284164625|ref|YP_003402904.1| - 1.9 8.8 5.4 0.33 11.3 0.4 2.0 2 1 0 2 2 2 0 zinc-finger-containing domain Rubredoxin_2 PF18073.1 gi|284164625|ref|YP_003402904.1| - 2.2 8.1 18.2 6.8 6.5 1.7 4.0 3 1 1 4 4 4 0 Rubredoxin metal binding domain zinc_ribbon_15 PF17032.5 gi|284164625|ref|YP_003402904.1| - 2.7 8.8 10.1 1.4 9.7 0.5 3.0 1 1 1 3 3 3 0 zinc-ribbon family Ribosomal_S27 PF01599.19 gi|284164625|ref|YP_003402904.1| - 3.2 8.0 7.7 5.1 7.3 3.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S27a Zn_ribbon_SprT PF17283.2 gi|284164625|ref|YP_003402904.1| - 3.6 7.6 7.1 14 5.7 0.5 3.0 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|284164625|ref|YP_003402904.1| - 3.8 8.1 9.7 37 4.9 0.0 3.7 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain zf-RING_5 PF14634.6 gi|284164625|ref|YP_003402904.1| - 3.9 7.5 8.5 2.8 8.0 1.0 2.8 2 2 1 3 3 3 0 zinc-RING finger domain A2L_zn_ribbon PF08792.10 gi|284164625|ref|YP_003402904.1| - 9 6.1 14.4 28 4.6 0.7 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain PGM_PMM_I PF02878.16 gi|284164626|ref|YP_003402905.1| - 2.5e-32 111.5 0.0 5e-32 110.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|284164626|ref|YP_003402905.1| - 1.7e-21 76.7 0.4 4.6e-21 75.4 0.4 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|284164626|ref|YP_003402905.1| - 1.1e-19 70.8 0.0 2.2e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|284164626|ref|YP_003402905.1| - 3.4e-14 52.8 4.4 5.1e-14 52.2 1.7 2.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|284164626|ref|YP_003402905.1| - 0.04 14.1 0.5 0.28 11.3 0.5 2.5 1 1 0 1 1 1 0 Damage-inducible protein CinA KH domain DHHA1 PF02272.19 gi|284164627|ref|YP_003402906.1| - 2.8e-12 47.2 0.2 5.1e-12 46.4 0.2 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|284164627|ref|YP_003402906.1| - 1.8e-11 44.1 0.1 3.1e-11 43.4 0.1 1.4 1 0 0 1 1 1 1 DHH family NAD_binding_10 PF13460.6 gi|284164628|ref|YP_003402907.1| - 4.5e-15 56.0 0.1 7.1e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|284164628|ref|YP_003402907.1| - 4.2e-13 49.3 0.0 7.7e-13 48.5 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.18 gi|284164628|ref|YP_003402907.1| - 1.2e-08 35.2 0.5 2.3e-08 34.3 0.5 1.5 1 0 0 1 1 1 1 TrkA-N domain 3Beta_HSD PF01073.19 gi|284164628|ref|YP_003402907.1| - 2.3e-08 33.4 0.0 1.4e-07 30.8 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.17 gi|284164628|ref|YP_003402907.1| - 0.00014 22.4 0.3 0.00031 21.3 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|284164628|ref|YP_003402907.1| - 0.00037 20.2 0.1 0.00075 19.2 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|284164628|ref|YP_003402907.1| - 0.00039 20.1 0.0 0.00065 19.3 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF1731 PF08338.11 gi|284164628|ref|YP_003402907.1| - 0.0006 19.6 0.0 0.0016 18.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) RmlD_sub_bind PF04321.17 gi|284164628|ref|YP_003402907.1| - 0.0058 15.8 0.3 0.0077 15.4 0.3 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|284164628|ref|YP_003402907.1| - 0.014 14.8 0.0 0.045 13.2 0.0 1.7 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_2 PF03446.15 gi|284164628|ref|YP_003402907.1| - 0.016 15.4 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|284164628|ref|YP_003402907.1| - 0.022 14.4 0.1 0.038 13.6 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|284164628|ref|YP_003402907.1| - 0.082 13.5 0.3 0.22 12.1 0.3 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.22 gi|284164628|ref|YP_003402907.1| - 0.23 12.3 0.5 0.56 11.1 0.1 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Tubulin PF00091.25 gi|284164630|ref|YP_003402909.1| - 6.5e-27 95.0 0.1 1.2e-26 94.1 0.1 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|284164630|ref|YP_003402909.1| - 2.6e-07 30.2 0.4 8e-07 28.5 0.1 1.9 2 0 0 2 2 2 1 Tubulin like 2-Hacid_dh_C PF02826.19 gi|284164630|ref|YP_003402909.1| - 0.074 12.4 0.3 0.35 10.2 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF1771 PF08590.10 gi|284164631|ref|YP_003402910.1| - 0.35 11.3 35.4 0.24 11.8 6.1 5.2 3 2 2 5 5 5 0 Domain of unknown function (DUF1771) YtxH PF12732.7 gi|284164631|ref|YP_003402910.1| - 0.35 11.4 35.6 1.8e+04 -19.2 35.6 5.2 1 1 0 1 1 1 0 YtxH-like protein Amino_oxidase PF01593.24 gi|284164631|ref|YP_003402910.1| - 10 5.3 9.3 0.39 9.9 1.5 1.9 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase ATPgrasp_Ter PF15632.6 gi|284164632|ref|YP_003402911.1| - 5.7e-06 26.1 0.0 1.1e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|284164632|ref|YP_003402911.1| - 0.0029 17.6 0.0 0.024 14.7 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|284164632|ref|YP_003402911.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_S49 PF01343.18 gi|284164633|ref|YP_003402912.1| - 4.2e-39 134.0 0.0 7.2e-39 133.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|284164633|ref|YP_003402912.1| - 0.043 12.8 0.0 0.061 12.3 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase AAA_18 PF13238.6 gi|284164633|ref|YP_003402912.1| - 0.058 13.9 0.2 0.1 13.1 0.2 1.4 1 0 0 1 1 1 0 AAA domain SHOCT PF09851.9 gi|284164633|ref|YP_003402912.1| - 5 7.0 7.4 0.81 9.5 2.7 2.2 3 0 0 3 3 3 0 Short C-terminal domain DUF373 PF04123.13 gi|284164634|ref|YP_003402913.1| - 2.4e-115 385.6 9.7 2.8e-115 385.4 9.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Diphthami_syn_2 PF01902.17 gi|284164635|ref|YP_003402914.1| - 2.6e-59 200.4 0.0 3.9e-59 199.8 0.0 1.3 1 1 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|284164635|ref|YP_003402914.1| - 0.023 14.2 0.0 0.11 11.9 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DUF892 PF05974.12 gi|284164636|ref|YP_003402915.1| - 0.0058 16.7 0.1 0.0065 16.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF892) DUF1508 PF07411.12 gi|284164636|ref|YP_003402915.1| - 0.17 11.8 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1508) TAT_signal PF10518.9 gi|284164637|ref|YP_003402916.1| - 0.0072 16.1 3.2 0.013 15.3 3.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NTP_transferase PF00483.23 gi|284164639|ref|YP_003402918.1| - 1e-38 133.4 0.0 1.4e-38 132.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|284164639|ref|YP_003402918.1| - 1.7e-12 48.0 0.0 1.7e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|284164639|ref|YP_003402918.1| - 0.015 15.1 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep PF00132.24 gi|284164639|ref|YP_003402918.1| - 0.036 13.8 0.9 0.99 9.2 0.0 2.9 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) HTH_20 PF12840.7 gi|284164640|ref|YP_003402919.1| - 0.00032 20.7 0.4 0.00058 19.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284164640|ref|YP_003402919.1| - 0.0039 17.1 0.2 0.0056 16.6 0.2 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r3 PF04539.16 gi|284164640|ref|YP_003402919.1| - 0.019 15.0 0.1 0.027 14.5 0.1 1.3 1 0 0 1 1 1 0 Sigma-70 region 3 zf-trcl PF13451.6 gi|284164640|ref|YP_003402919.1| - 0.022 14.6 0.8 0.46 10.4 0.0 2.2 2 0 0 2 2 2 0 Probable zinc-ribbon domain DprA_WH PF17782.1 gi|284164640|ref|YP_003402919.1| - 0.053 13.6 1.5 0.098 12.8 1.5 1.4 1 0 0 1 1 1 0 DprA winged helix domain Zn-ribbon_8 PF09723.10 gi|284164640|ref|YP_003402919.1| - 0.083 13.0 2.0 0.18 11.9 1.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284164640|ref|YP_003402919.1| - 0.5 9.8 3.6 2.5 7.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|284164640|ref|YP_003402919.1| - 0.88 9.6 3.8 0.74 9.8 0.9 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin_2 PF18073.1 gi|284164640|ref|YP_003402919.1| - 2.8 7.8 5.2 18 5.2 1.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Rieske PF00355.26 gi|284164642|ref|YP_003402921.1| - 1.1e-06 28.4 0.1 1.6e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Sacchrp_dh_NADP PF03435.18 gi|284164643|ref|YP_003402922.1| - 4e-13 49.8 0.5 2e-12 47.5 0.0 2.2 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|284164643|ref|YP_003402922.1| - 1.7e-07 31.3 0.2 4.2e-07 30.0 0.1 1.8 1 1 1 2 2 2 1 NAD(P)H-binding Epimerase PF01370.21 gi|284164643|ref|YP_003402922.1| - 0.0081 15.6 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family MatE PF01554.18 gi|284164644|ref|YP_003402923.1| - 1.8e-40 138.2 19.7 1.3e-23 83.4 6.8 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|284164644|ref|YP_003402923.1| - 0.00019 21.5 4.7 0.00019 21.5 4.7 3.7 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain COX2-transmemb PF09125.10 gi|284164645|ref|YP_003402924.1| - 0.1 12.4 1.7 0.14 11.9 1.7 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane Aminotran_4 PF01063.19 gi|284164646|ref|YP_003402925.1| - 1e-48 166.2 0.0 1.2e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV GATase PF00117.28 gi|284164647|ref|YP_003402926.1| - 1.4e-42 145.7 0.0 1.7e-42 145.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284164647|ref|YP_003402926.1| - 4.2e-10 39.8 0.2 8.6e-10 38.7 0.2 1.5 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|284164648|ref|YP_003402927.1| - 3.8e-103 344.6 0.0 5.3e-103 344.1 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|284164648|ref|YP_003402927.1| - 2.1e-08 34.5 0.0 1.1e-07 32.1 0.0 2.1 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region HHH_5 PF14520.6 gi|284164649|ref|YP_003402928.1| - 6.6e-10 39.4 0.1 1.4e-09 38.4 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|284164649|ref|YP_003402928.1| - 3.9e-05 23.9 0.0 0.00011 22.4 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|284164649|ref|YP_003402928.1| - 0.015 15.5 0.0 0.025 14.8 0.0 1.3 1 0 0 1 1 1 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|284164649|ref|YP_003402928.1| - 0.016 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Homez PF11569.8 gi|284164649|ref|YP_003402928.1| - 0.14 11.6 0.1 0.28 10.7 0.1 1.4 1 0 0 1 1 1 0 Homeodomain leucine-zipper encoding, Homez IMS_HHH PF11798.8 gi|284164649|ref|YP_003402928.1| - 0.2 12.1 0.0 0.41 11.1 0.0 1.5 1 0 0 1 1 1 0 IMS family HHH motif Shikimate_dh_N PF08501.11 gi|284164650|ref|YP_003402929.1| - 4.2e-27 94.2 0.0 8.5e-27 93.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|284164650|ref|YP_003402929.1| - 4e-14 52.1 1.0 8.6e-14 51.0 1.0 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|284164650|ref|YP_003402929.1| - 7.3e-10 39.0 0.0 1.2e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|284164650|ref|YP_003402929.1| - 5.6e-05 22.5 0.1 0.00038 19.8 0.1 2.0 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|284164650|ref|YP_003402929.1| - 0.00066 19.1 0.1 0.0011 18.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284164650|ref|YP_003402929.1| - 0.0018 18.8 0.2 0.0033 18.0 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|284164650|ref|YP_003402929.1| - 0.0019 17.8 0.3 0.0037 16.8 0.3 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|284164650|ref|YP_003402929.1| - 0.0045 16.3 1.7 0.0072 15.6 1.7 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|284164650|ref|YP_003402929.1| - 0.02 14.3 1.5 0.038 13.5 1.5 1.5 1 1 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|284164650|ref|YP_003402929.1| - 0.022 14.4 0.2 0.035 13.7 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|284164650|ref|YP_003402929.1| - 0.023 15.0 1.5 0.079 13.2 1.5 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|284164650|ref|YP_003402929.1| - 0.071 13.6 0.2 0.12 12.8 0.2 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|284164650|ref|YP_003402929.1| - 0.22 10.7 0.2 0.32 10.2 0.2 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|284164650|ref|YP_003402929.1| - 0.24 11.3 0.6 0.34 10.8 0.6 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|284164650|ref|YP_003402929.1| - 0.79 8.7 3.1 1.1 8.3 3.1 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Na_Ca_ex PF01699.24 gi|284164651|ref|YP_003402930.1| - 1.9e-46 157.7 43.5 8.8e-26 90.7 17.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Antimicrobial17 PF08129.11 gi|284164651|ref|YP_003402930.1| - 0.2 11.7 0.2 0.44 10.6 0.2 1.5 1 0 0 1 1 1 0 Alpha/beta enterocin family Regulator_TrmB PF11495.8 gi|284164652|ref|YP_003402931.1| - 0.015 14.5 0.0 0.03 13.5 0.0 1.6 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_20 PF12840.7 gi|284164652|ref|YP_003402931.1| - 0.028 14.5 12.5 0.59 10.2 1.7 3.5 2 2 0 2 2 2 0 Helix-turn-helix domain PAS PF00989.25 gi|284164653|ref|YP_003402932.1| - 3.9e-43 146.0 0.0 7.5e-14 51.7 0.0 3.4 3 0 0 3 3 3 3 PAS fold BAT PF15915.5 gi|284164653|ref|YP_003402932.1| - 5.6e-42 143.3 15.3 5.6e-42 143.3 15.3 3.5 3 0 0 3 3 3 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|284164653|ref|YP_003402932.1| - 1.7e-37 128.0 13.1 7.4e-15 55.1 0.2 4.9 5 0 0 5 5 4 3 PAS fold PAS_9 PF13426.7 gi|284164653|ref|YP_003402932.1| - 1.6e-35 121.5 0.0 2.1e-11 44.0 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|284164653|ref|YP_003402932.1| - 8.1e-32 109.4 0.2 1.6e-11 44.4 0.0 3.7 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|284164653|ref|YP_003402932.1| - 7e-17 61.0 0.4 6.1e-16 58.0 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain PAS_8 PF13188.7 gi|284164653|ref|YP_003402932.1| - 1.8e-13 50.1 0.0 0.00033 20.6 0.0 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|284164653|ref|YP_003402932.1| - 2.3e-11 44.1 2.2 2.4e-10 40.8 0.3 2.8 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|284164653|ref|YP_003402932.1| - 1.5e-08 34.8 0.0 0.00032 20.8 0.0 3.9 3 1 0 3 3 3 1 PAS fold GAF PF01590.26 gi|284164653|ref|YP_003402932.1| - 4.3e-06 27.4 0.0 1.5e-05 25.6 0.0 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|284164653|ref|YP_003402932.1| - 7e-05 23.2 0.0 0.00037 20.8 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_11 PF14598.6 gi|284164653|ref|YP_003402932.1| - 0.00037 20.6 0.0 0.49 10.5 0.0 3.2 3 0 0 3 3 3 1 PAS domain HTH_20 PF12840.7 gi|284164653|ref|YP_003402932.1| - 0.0032 17.5 0.0 0.01 15.9 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MLTR_LBD PF17765.1 gi|284164653|ref|YP_003402932.1| - 0.0038 17.4 1.5 0.072 13.2 0.0 3.2 3 0 0 3 3 3 1 MmyB-like transcription regulator ligand binding domain Sigma70_r4 PF04545.16 gi|284164653|ref|YP_003402932.1| - 0.0074 15.8 0.5 0.11 12.0 0.1 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 FAO_M PF16350.5 gi|284164653|ref|YP_003402932.1| - 0.016 15.5 0.1 0.016 15.5 0.1 2.3 3 0 0 3 3 1 0 FAD dependent oxidoreductase central domain MarR_2 PF12802.7 gi|284164653|ref|YP_003402932.1| - 0.017 15.0 0.0 0.05 13.5 0.0 1.7 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|284164653|ref|YP_003402932.1| - 0.031 13.9 0.1 12 5.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.19 gi|284164653|ref|YP_003402932.1| - 0.052 13.1 0.0 4.6 6.9 0.0 2.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family MEKHLA PF08670.11 gi|284164653|ref|YP_003402932.1| - 0.077 12.9 0.0 16 5.4 0.0 2.6 2 0 0 2 2 2 0 MEKHLA domain HTH_24 PF13412.6 gi|284164653|ref|YP_003402932.1| - 0.12 12.0 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding tRNA_deacylase PF04414.12 gi|284164654|ref|YP_003402933.1| - 1.5e-61 207.5 0.0 2e-61 207.1 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase YhzD PF14120.6 gi|284164654|ref|YP_003402933.1| - 0.17 12.0 0.1 0.58 10.3 0.0 1.9 2 0 0 2 2 2 0 YhzD-like protein Tubulin PF00091.25 gi|284164655|ref|YP_003402934.1| - 1.3e-41 143.0 0.4 2.5e-41 142.1 0.4 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|284164655|ref|YP_003402934.1| - 6.8e-36 122.5 2.0 6.8e-36 122.5 2.0 2.1 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|284164655|ref|YP_003402934.1| - 0.0042 17.0 1.8 0.0099 15.8 0.1 2.2 3 0 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|284164655|ref|YP_003402934.1| - 0.026 13.7 8.1 0.053 12.7 1.9 2.6 1 1 1 2 2 2 0 Tubulin like Rubrerythrin PF02915.17 gi|284164656|ref|YP_003402935.1| - 0.00057 20.3 0.9 0.0014 19.1 0.4 1.8 2 0 0 2 2 2 1 Rubrerythrin DUF349 PF03993.12 gi|284164656|ref|YP_003402935.1| - 0.15 12.4 2.6 3 8.2 0.5 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) TPR_6 PF13174.6 gi|284164656|ref|YP_003402935.1| - 0.44 11.3 2.7 3.1 8.6 0.3 3.4 3 2 0 3 3 3 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|284164656|ref|YP_003402935.1| - 0.61 10.2 2.9 1.6 8.9 0.3 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat Lactamase_B PF00753.27 gi|284164657|ref|YP_003402936.1| - 2.7e-16 60.2 3.8 6.7e-16 58.9 3.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|284164657|ref|YP_003402936.1| - 9.5e-09 35.7 0.0 3.5e-08 33.9 0.0 2.0 2 1 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|284164657|ref|YP_003402936.1| - 0.00051 19.6 0.6 0.0015 18.1 0.6 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Fer2 PF00111.27 gi|284164658|ref|YP_003402937.1| - 6.4e-11 42.0 5.0 9.4e-11 41.5 5.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|284164658|ref|YP_003402937.1| - 0.0084 16.1 0.2 0.0097 15.9 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.14 gi|284164659|ref|YP_003402938.1| - 7.7e-13 48.1 1.4 2.4e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|284164659|ref|YP_003402938.1| - 1.6e-11 44.0 2.2 9.4e-11 41.5 2.2 2.0 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|284164659|ref|YP_003402938.1| - 2.2e-10 40.6 7.6 1.5e-05 24.7 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284164659|ref|YP_003402938.1| - 5.1e-10 39.0 10.5 2e-07 30.4 0.5 2.6 3 0 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|284164659|ref|YP_003402938.1| - 2.7e-08 33.3 0.7 6.9e-08 32.0 0.3 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|284164659|ref|YP_003402938.1| - 1.6e-07 31.0 13.0 2.7e-07 30.3 8.0 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|284164659|ref|YP_003402938.1| - 5.4e-07 29.0 3.3 0.0041 16.2 0.2 2.9 3 0 0 3 3 3 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|284164659|ref|YP_003402938.1| - 3.2e-06 26.1 0.6 4e-05 22.5 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|284164659|ref|YP_003402938.1| - 4.3e-06 26.2 3.7 4.3e-06 26.2 3.7 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284164659|ref|YP_003402938.1| - 4.9e-06 26.7 0.4 4.9e-06 26.7 0.4 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|284164659|ref|YP_003402938.1| - 2.8e-05 23.5 0.4 0.0001 21.6 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|284164659|ref|YP_003402938.1| - 0.0014 19.1 2.1 0.0074 16.8 0.8 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|284164659|ref|YP_003402938.1| - 0.0018 18.2 0.1 0.004 17.1 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|284164659|ref|YP_003402938.1| - 0.0021 17.4 0.1 0.0021 17.4 0.1 2.2 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|284164659|ref|YP_003402938.1| - 0.0023 17.3 0.0 0.0023 17.3 0.0 2.2 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|284164659|ref|YP_003402938.1| - 0.0073 15.6 0.6 0.057 12.7 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|284164659|ref|YP_003402938.1| - 0.022 14.4 0.2 0.041 13.5 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|284164659|ref|YP_003402938.1| - 0.024 14.7 0.0 0.27 11.3 0.0 2.5 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase GMC_oxred_N PF00732.19 gi|284164659|ref|YP_003402938.1| - 0.094 12.1 0.1 2.8 7.2 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase DUF4397 PF14344.6 gi|284164660|ref|YP_003402939.1| - 5.9e-43 146.5 2.0 3.9e-31 108.3 0.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) PTSIIA_gutA PF03829.13 gi|284164660|ref|YP_003402939.1| - 0.05 13.5 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 PTS system glucitol/sorbitol-specific IIA component DUF3324 PF11797.8 gi|284164660|ref|YP_003402939.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminal (DUF3324) Peptidase_M20 PF01546.28 gi|284164661|ref|YP_003402940.1| - 6.8e-24 84.7 7.7 1e-23 84.1 7.7 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284164661|ref|YP_003402940.1| - 2.5e-13 49.9 0.6 1.2e-12 47.7 0.6 2.2 2 1 0 2 2 2 1 Peptidase dimerisation domain DUF302 PF03625.14 gi|284164662|ref|YP_003402941.1| - 1.1e-19 70.1 0.0 3.8e-19 68.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF302 Ribosomal_S10 PF00338.22 gi|284164663|ref|YP_003402942.1| - 9.2e-13 48.3 0.0 1e-12 48.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.28 gi|284164664|ref|YP_003402943.1| - 3.9e-19 69.0 0.9 4.9e-19 68.7 0.9 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|284164664|ref|YP_003402943.1| - 0.027 14.9 0.1 0.041 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain PqqD PF05402.12 gi|284164666|ref|YP_003402945.1| - 0.0078 16.5 0.0 0.018 15.3 0.0 1.7 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) MFS_1 PF07690.16 gi|284164667|ref|YP_003402946.1| - 2.1e-48 165.1 49.3 8.3e-25 87.5 24.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|284164667|ref|YP_003402946.1| - 2.5e-07 29.9 24.1 9.3e-07 28.1 5.1 3.3 2 2 2 4 4 4 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|284164667|ref|YP_003402946.1| - 0.00011 21.2 16.0 0.0018 17.2 14.4 2.8 1 1 1 2 2 2 2 MFS_1 like family Atthog PF18800.1 gi|284164667|ref|YP_003402946.1| - 0.13 12.1 1.4 6.6 6.6 0.1 2.6 2 0 0 2 2 2 0 Attenuator of Hedgehog DUF4491 PF14898.6 gi|284164667|ref|YP_003402946.1| - 0.19 12.2 1.1 1.6 9.2 0.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4491) ALMT PF11744.8 gi|284164667|ref|YP_003402946.1| - 0.3 9.9 0.1 0.49 9.2 0.1 1.3 1 0 0 1 1 1 0 Aluminium activated malate transporter LacY_symp PF01306.19 gi|284164667|ref|YP_003402946.1| - 0.41 9.4 8.0 0.2 10.4 2.6 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter PhoU PF01895.19 gi|284164668|ref|YP_003402947.1| - 1.8e-14 54.0 6.8 1.8e-12 47.5 0.0 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|284164668|ref|YP_003402947.1| - 9.5e-07 28.6 0.0 2e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|284164669|ref|YP_003402948.1| - 5.8e-44 150.4 0.3 8.2e-44 149.9 0.3 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|284164669|ref|YP_003402948.1| - 7.4e-07 28.8 0.1 2.7e-06 27.0 0.1 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|284164669|ref|YP_003402948.1| - 0.075 12.3 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Phosphofructokinase MoCF_biosynth PF00994.24 gi|284164671|ref|YP_003402950.1| - 1.4e-35 122.1 0.1 2.8e-35 121.1 0.0 1.5 1 1 1 2 2 2 1 Probable molybdopterin binding domain HTH_20 PF12840.7 gi|284164672|ref|YP_003402951.1| - 5.5e-06 26.3 0.0 9.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284164672|ref|YP_003402951.1| - 0.0004 20.2 0.0 0.00063 19.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|284164672|ref|YP_003402951.1| - 0.00044 19.9 0.0 0.0006 19.5 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_24 PF13412.6 gi|284164672|ref|YP_003402951.1| - 0.0007 19.1 0.0 0.0014 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PTPS PF01242.19 gi|284164673|ref|YP_003402952.1| - 8.1e-21 74.3 0.0 1.1e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GYD PF08734.11 gi|284164673|ref|YP_003402952.1| - 0.13 12.3 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 GYD domain Radical_SAM PF04055.21 gi|284164674|ref|YP_003402953.1| - 1.2e-20 74.5 0.9 8.9e-20 71.7 0.8 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|284164674|ref|YP_003402953.1| - 4.1e-14 52.7 0.0 1.2e-13 51.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|284164674|ref|YP_003402953.1| - 1.5e-09 38.2 0.0 2.3e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|284164674|ref|YP_003402953.1| - 0.0093 15.9 0.3 0.29 11.1 0.0 2.2 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.13 gi|284164675|ref|YP_003402954.1| - 9.3e-74 247.4 0.0 1.1e-73 247.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|284164675|ref|YP_003402954.1| - 1.8e-06 27.7 0.0 3.8e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|284164675|ref|YP_003402954.1| - 0.00018 20.4 0.0 0.00024 20.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|284164675|ref|YP_003402954.1| - 0.0083 15.3 0.0 0.013 14.6 0.0 1.4 1 1 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|284164675|ref|YP_003402954.1| - 0.015 14.9 0.2 0.021 14.5 0.2 1.1 1 0 0 1 1 1 0 Asparagine synthase PQQ_2 PF13360.6 gi|284164676|ref|YP_003402955.1| - 5.6e-29 101.4 22.5 8.4e-15 55.0 4.3 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|284164676|ref|YP_003402955.1| - 2.2e-16 59.8 41.2 3.2e-05 24.2 0.1 8.2 8 1 0 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|284164676|ref|YP_003402955.1| - 1.9e-15 55.9 19.9 1.8e-05 24.4 0.0 7.7 7 2 0 7 7 7 4 PQQ enzyme repeat TAT_signal PF10518.9 gi|284164676|ref|YP_003402955.1| - 0.19 11.7 0.0 0.19 11.7 0.0 3.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Rod_cone_degen PF15201.6 gi|284164676|ref|YP_003402955.1| - 0.67 10.1 4.7 0.52 10.5 0.3 3.0 2 1 1 3 3 3 0 Progressive rod-cone degeneration Fe-ADH PF00465.19 gi|284164677|ref|YP_003402956.1| - 5.7e-63 212.9 3.2 6.8e-63 212.7 3.2 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|284164677|ref|YP_003402956.1| - 1e-11 45.0 0.1 1.5e-06 28.1 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase NAD_binding_10 PF13460.6 gi|284164678|ref|YP_003402957.1| - 2.7e-24 86.1 0.7 3e-24 85.9 0.7 1.0 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|284164678|ref|YP_003402957.1| - 2.9e-06 26.9 0.0 3.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|284164678|ref|YP_003402957.1| - 2.9e-05 24.3 0.2 4.6e-05 23.7 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|284164678|ref|YP_003402957.1| - 0.00073 18.7 0.1 0.0012 18.0 0.1 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|284164678|ref|YP_003402957.1| - 0.002 17.7 0.1 0.003 17.2 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family DapB_N PF01113.20 gi|284164678|ref|YP_003402957.1| - 0.0067 16.6 0.3 0.012 15.7 0.3 1.5 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus adh_short PF00106.25 gi|284164678|ref|YP_003402957.1| - 0.0092 15.5 0.2 0.014 14.8 0.2 1.4 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|284164678|ref|YP_003402957.1| - 0.016 15.4 0.4 0.029 14.6 0.4 1.5 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|284164678|ref|YP_003402957.1| - 0.03 14.2 0.1 0.061 13.2 0.1 1.5 1 0 0 1 1 1 0 KR domain F420_oxidored PF03807.17 gi|284164678|ref|YP_003402957.1| - 0.046 14.3 0.8 0.24 12.0 0.4 2.5 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HxlR PF01638.17 gi|284164679|ref|YP_003402958.1| - 1.3e-20 73.0 0.0 1.6e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|284164679|ref|YP_003402958.1| - 2.7e-08 33.9 0.0 3.6e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|284164679|ref|YP_003402958.1| - 1.4e-07 31.9 0.1 2e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284164679|ref|YP_003402958.1| - 2.4e-06 27.3 0.1 3.6e-06 26.8 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284164679|ref|YP_003402958.1| - 3.7e-05 23.6 0.1 7.4e-05 22.6 0.0 1.5 2 0 0 2 2 2 1 MarR family PadR PF03551.14 gi|284164679|ref|YP_003402958.1| - 3.7e-05 23.6 0.0 5.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|284164679|ref|YP_003402958.1| - 7.3e-05 22.8 0.4 0.00013 21.9 0.4 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284164679|ref|YP_003402958.1| - 0.00015 21.5 0.0 0.00023 20.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284164679|ref|YP_003402958.1| - 0.00026 20.8 0.1 0.00038 20.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.6 gi|284164679|ref|YP_003402958.1| - 0.0005 20.2 0.0 0.00063 19.9 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_IclR PF09339.10 gi|284164679|ref|YP_003402958.1| - 0.0038 17.0 0.1 0.0066 16.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4364 PF14277.6 gi|284164679|ref|YP_003402958.1| - 0.0039 16.9 0.0 0.0055 16.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF3116 PF11313.8 gi|284164679|ref|YP_003402958.1| - 0.0048 16.7 0.0 0.0068 16.2 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_45 PF14947.6 gi|284164679|ref|YP_003402958.1| - 0.0093 15.9 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TFIIE_alpha PF02002.17 gi|284164679|ref|YP_003402958.1| - 0.027 14.4 0.1 0.034 14.0 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2250 PF10007.9 gi|284164679|ref|YP_003402958.1| - 0.054 13.6 0.1 4.6 7.4 0.0 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) CaATP_NAI PF12515.8 gi|284164679|ref|YP_003402958.1| - 0.071 12.7 0.2 0.23 11.1 0.0 1.9 2 0 0 2 2 2 0 Ca2+-ATPase N terminal autoinhibitory domain GntR PF00392.21 gi|284164679|ref|YP_003402958.1| - 0.082 12.6 0.2 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2513 PF10711.9 gi|284164679|ref|YP_003402958.1| - 0.13 12.6 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.20 gi|284164679|ref|YP_003402958.1| - 0.17 12.3 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Ribosomal_S3Ae PF01015.18 gi|284164680|ref|YP_003402959.1| - 1.5e-58 197.7 0.1 1.8e-58 197.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_S13_N PF08069.12 gi|284164683|ref|YP_003402962.1| - 9.5e-24 83.2 0.1 1.5e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|284164683|ref|YP_003402962.1| - 1.1e-14 54.4 0.4 1.6e-14 53.8 0.4 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 Miga PF10265.9 gi|284164683|ref|YP_003402962.1| - 0.056 12.4 0.0 0.06 12.3 0.0 1.1 1 0 0 1 1 1 0 Mitoguardin AMP-binding PF00501.28 gi|284164684|ref|YP_003402963.1| - 2.1e-97 326.4 0.4 2.5e-97 326.1 0.4 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164684|ref|YP_003402963.1| - 2.5e-20 73.2 0.8 5.9e-20 72.0 0.3 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Phage_integrase PF00589.22 gi|284164685|ref|YP_003402964.1| - 1.5e-11 44.4 0.0 8e-11 42.0 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|284164685|ref|YP_003402964.1| - 2e-08 34.4 0.1 4.6e-07 30.1 0.0 2.8 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|284164685|ref|YP_003402964.1| - 0.0022 18.4 0.0 0.024 15.1 0.0 2.6 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_2 PF12834.7 gi|284164685|ref|YP_003402964.1| - 0.1 13.3 0.0 22 5.8 0.0 2.3 1 1 1 2 2 2 0 Phage integrase, N-terminal RdDM_RDM1 PF09187.10 gi|284164685|ref|YP_003402964.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA-directed DNA methylation 1 MarR_2 PF12802.7 gi|284164686|ref|YP_003402965.1| - 3.4e-06 26.9 0.0 4.6e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284164686|ref|YP_003402965.1| - 2.3e-05 23.8 0.1 7.3e-05 22.3 0.1 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284164686|ref|YP_003402965.1| - 7.1e-05 22.8 0.1 0.00012 22.1 0.0 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284164686|ref|YP_003402965.1| - 0.00023 21.0 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|284164686|ref|YP_003402965.1| - 0.00064 19.5 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164686|ref|YP_003402965.1| - 0.012 15.6 0.1 0.029 14.3 0.0 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Mrr_N PF14338.6 gi|284164686|ref|YP_003402965.1| - 0.013 15.6 0.0 0.026 14.7 0.0 1.6 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_28 PF13518.6 gi|284164686|ref|YP_003402965.1| - 0.02 15.0 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284164686|ref|YP_003402965.1| - 0.024 14.4 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_12 PF08461.10 gi|284164686|ref|YP_003402965.1| - 0.035 14.0 0.0 0.053 13.5 0.0 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain AbiEi_4 PF13338.6 gi|284164686|ref|YP_003402965.1| - 0.051 13.7 0.0 0.097 12.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin PadR PF03551.14 gi|284164686|ref|YP_003402965.1| - 0.063 13.2 0.1 0.3 11.1 0.1 2.0 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|284164686|ref|YP_003402965.1| - 0.065 13.7 0.0 0.11 13.0 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|284164686|ref|YP_003402965.1| - 0.092 13.0 0.1 0.24 11.6 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|284164686|ref|YP_003402965.1| - 0.11 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|284164686|ref|YP_003402965.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_45 PF14947.6 gi|284164687|ref|YP_003402966.1| - 0.05 13.6 0.0 0.055 13.5 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3483 PF11982.8 gi|284164690|ref|YP_003402969.1| - 0.06 13.0 0.4 0.086 12.5 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3483) ELO PF01151.18 gi|284164690|ref|YP_003402969.1| - 0.18 11.3 1.4 0.23 11.0 1.4 1.1 1 0 0 1 1 1 0 GNS1/SUR4 family PadR PF03551.14 gi|284164691|ref|YP_003402970.1| - 1.1e-05 25.3 0.3 2e-05 24.4 0.3 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|284164691|ref|YP_003402970.1| - 0.00022 21.3 0.0 0.00027 21.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation DUF4065 PF13274.6 gi|284164691|ref|YP_003402970.1| - 0.0063 17.4 0.2 0.022 15.7 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) HxlR PF01638.17 gi|284164691|ref|YP_003402970.1| - 0.018 14.9 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF4364 PF14277.6 gi|284164691|ref|YP_003402970.1| - 0.042 13.6 0.1 0.057 13.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|284164691|ref|YP_003402970.1| - 0.1 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF21 PF01595.20 gi|284164692|ref|YP_003402971.1| - 5e-49 166.4 3.1 7.4e-49 165.8 3.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|284164692|ref|YP_003402971.1| - 3.3e-21 75.1 1.7 3.3e-21 75.1 1.7 2.1 3 0 0 3 3 3 1 Transporter associated domain CBS PF00571.28 gi|284164692|ref|YP_003402971.1| - 7e-13 48.8 4.2 1.4e-05 25.5 0.4 2.8 2 0 0 2 2 2 2 CBS domain CbiX PF01903.17 gi|284164692|ref|YP_003402971.1| - 0.17 12.2 1.2 1.7 9.0 0.3 2.5 2 0 0 2 2 2 0 CbiX PHB_acc_N PF07879.11 gi|284164692|ref|YP_003402971.1| - 0.24 11.5 1.3 0.47 10.6 0.0 2.1 2 0 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain ABC_tran PF00005.27 gi|284164693|ref|YP_003402972.1| - 1.2e-60 203.9 0.0 9.1e-31 107.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|284164693|ref|YP_003402972.1| - 2e-37 127.5 1.3 5.2e-18 65.3 0.0 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284164693|ref|YP_003402972.1| - 9e-11 42.1 0.7 0.0078 16.1 0.1 4.2 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284164693|ref|YP_003402972.1| - 8.4e-08 31.8 1.0 0.00065 19.4 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|284164693|ref|YP_003402972.1| - 4.3e-07 30.3 2.1 0.067 13.5 0.1 3.8 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|284164693|ref|YP_003402972.1| - 3.5e-06 27.5 0.3 0.14 12.5 0.0 3.0 2 1 1 3 3 3 2 AAA ATPase domain PRK PF00485.18 gi|284164693|ref|YP_003402972.1| - 3.2e-05 23.8 0.3 0.24 11.1 0.0 2.3 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|284164693|ref|YP_003402972.1| - 0.00015 22.3 0.0 0.07 13.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|284164693|ref|YP_003402972.1| - 0.001 19.0 0.1 1.8 8.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|284164693|ref|YP_003402972.1| - 0.0011 18.5 4.0 1.7 8.0 0.1 3.8 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|284164693|ref|YP_003402972.1| - 0.002 18.1 0.4 0.23 11.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|284164693|ref|YP_003402972.1| - 0.0057 16.8 0.0 0.84 9.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284164693|ref|YP_003402972.1| - 0.0065 17.0 0.0 0.46 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|284164693|ref|YP_003402972.1| - 0.0083 15.1 0.6 1.4 7.9 0.1 2.4 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|284164693|ref|YP_003402972.1| - 0.01 16.2 0.0 5.8 7.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase Mg_chelatase PF01078.21 gi|284164693|ref|YP_003402972.1| - 0.012 15.1 0.0 0.25 10.7 0.0 2.6 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|284164693|ref|YP_003402972.1| - 0.013 15.2 0.1 3.1 7.5 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|284164693|ref|YP_003402972.1| - 0.018 14.3 0.3 1.7 7.9 0.1 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.6 gi|284164693|ref|YP_003402972.1| - 0.019 14.7 0.1 3.9 7.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|284164693|ref|YP_003402972.1| - 0.019 14.7 0.0 6.8 6.4 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|284164693|ref|YP_003402972.1| - 0.033 14.3 0.0 3.6 7.7 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.29 gi|284164693|ref|YP_003402972.1| - 0.074 13.5 1.7 1.8 9.0 0.1 3.1 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|284164693|ref|YP_003402972.1| - 0.08 12.5 0.0 8.8 5.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain T2SSE PF00437.20 gi|284164693|ref|YP_003402972.1| - 0.1 11.7 0.1 10 5.1 0.1 3.0 3 0 0 3 3 3 0 Type II/IV secretion system protein ATPase PF06745.13 gi|284164693|ref|YP_003402972.1| - 0.12 11.7 1.3 3.1 7.1 0.0 2.5 3 0 0 3 3 2 0 KaiC NACHT PF05729.12 gi|284164693|ref|YP_003402972.1| - 0.14 12.0 1.1 13 5.6 0.1 2.4 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|284164693|ref|YP_003402972.1| - 0.17 11.0 0.2 4.9 6.3 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain APS_kinase PF01583.20 gi|284164693|ref|YP_003402972.1| - 0.23 11.4 0.4 3.4 7.5 0.1 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|284164693|ref|YP_003402972.1| - 0.24 11.3 0.1 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain G-alpha PF00503.20 gi|284164693|ref|YP_003402972.1| - 0.27 10.4 0.0 16 4.5 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit BPD_transp_1 PF00528.22 gi|284164694|ref|YP_003402973.1| - 6.1e-21 75.0 13.4 6.1e-21 75.0 13.4 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|284164694|ref|YP_003402973.1| - 8.1e-07 28.9 1.7 2e-06 27.7 0.0 2.4 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|284164695|ref|YP_003402974.1| - 1.7e-33 115.9 9.2 1.7e-33 115.9 9.2 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|284164696|ref|YP_003402975.1| - 1.7e-54 185.2 0.2 1.8e-52 178.6 0.5 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle HTH_10 PF04967.12 gi|284164697|ref|YP_003402976.1| - 1e-19 70.0 0.4 1.6e-19 69.4 0.4 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284164697|ref|YP_003402976.1| - 0.00013 21.9 0.8 0.00013 21.9 0.8 1.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_20 PF12840.7 gi|284164697|ref|YP_003402976.1| - 0.011 15.8 0.1 0.035 14.2 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284164697|ref|YP_003402976.1| - 0.012 15.4 0.0 0.035 14.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284164697|ref|YP_003402976.1| - 0.015 15.2 0.1 0.037 13.9 0.1 1.7 1 1 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|284164697|ref|YP_003402976.1| - 0.033 13.7 0.1 0.082 12.4 0.1 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|284164697|ref|YP_003402976.1| - 0.035 14.0 1.0 0.14 12.1 1.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|284164697|ref|YP_003402976.1| - 0.044 13.4 0.1 0.098 12.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|284164697|ref|YP_003402976.1| - 0.072 13.0 0.0 0.24 11.4 0.0 1.9 1 1 0 1 1 1 0 MarR family Na_sulph_symp PF00939.19 gi|284164698|ref|YP_003402977.1| - 6e-39 134.4 35.3 9e-39 133.8 35.3 1.3 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|284164698|ref|YP_003402977.1| - 1.3e-10 40.9 42.3 1.3e-10 40.9 42.3 2.0 1 1 1 2 2 2 2 Citrate transporter DUF5337 PF17272.2 gi|284164698|ref|YP_003402977.1| - 0.054 13.3 0.1 0.054 13.3 0.1 3.8 3 1 0 3 3 3 0 Family of unknown function (DUF5337) DUF4140 PF13600.6 gi|284164699|ref|YP_003402978.1| - 4.9 7.7 6.7 22 5.6 0.5 2.3 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HalOD1 PF18545.1 gi|284164701|ref|YP_003402980.1| - 1.3e-11 44.6 0.5 1.6e-11 44.3 0.5 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF1328 PF07043.13 gi|284164702|ref|YP_003402981.1| - 1.5e-14 53.9 17.8 1.8e-14 53.7 17.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) TraG_N PF07916.11 gi|284164702|ref|YP_003402981.1| - 1.5 7.6 6.0 1.5 7.5 6.0 1.0 1 0 0 1 1 1 0 TraG-like protein, N-terminal region EAP30 PF04157.16 gi|284164703|ref|YP_003402982.1| - 0.007 15.7 0.1 0.0081 15.5 0.1 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family CobT_C PF11775.8 gi|284164703|ref|YP_003402982.1| - 0.093 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT VWA domain SurE PF01975.17 gi|284164704|ref|YP_003402983.1| - 1.2e-47 162.3 0.0 1.5e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_23 PF13489.6 gi|284164705|ref|YP_003402984.1| - 2.7e-10 40.3 0.0 5.8e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164705|ref|YP_003402984.1| - 6.4e-09 36.5 0.0 1.4e-08 35.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164705|ref|YP_003402984.1| - 6.8e-05 23.4 0.1 0.00035 21.2 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Rsm22 PF09243.10 gi|284164705|ref|YP_003402984.1| - 0.0002 20.7 0.0 0.00033 20.0 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.6 gi|284164705|ref|YP_003402984.1| - 0.00071 19.4 0.1 0.013 15.3 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164705|ref|YP_003402984.1| - 0.003 18.2 0.0 0.019 15.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain PDH PF02153.17 gi|284164706|ref|YP_003402985.1| - 5.5e-12 45.2 3.1 7.1e-11 41.6 3.0 2.1 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|284164706|ref|YP_003402985.1| - 4.8e-05 23.9 1.9 0.0004 20.9 1.2 2.5 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Apolipoprotein PF01442.18 gi|284164706|ref|YP_003402985.1| - 0.036 13.9 3.0 0.2 11.5 2.5 2.1 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain GFO_IDH_MocA PF01408.22 gi|284164706|ref|YP_003402985.1| - 0.04 14.7 0.8 0.04 14.7 0.8 2.5 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|284164706|ref|YP_003402985.1| - 0.83 9.3 2.5 6.1 6.5 2.5 2.1 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284164706|ref|YP_003402985.1| - 5 7.0 7.1 0.96 9.3 1.5 2.4 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.25 gi|284164707|ref|YP_003402986.1| - 5.4e-12 46.0 0.1 1e-11 45.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|284164707|ref|YP_003402986.1| - 9.5e-09 35.6 0.0 1.4e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284164707|ref|YP_003402986.1| - 5.9e-07 29.8 0.0 1.8e-06 28.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284164707|ref|YP_003402986.1| - 0.00014 21.8 0.0 0.00025 21.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284164707|ref|YP_003402986.1| - 0.0011 19.1 0.0 0.0027 17.8 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|284164707|ref|YP_003402986.1| - 0.003 18.2 0.1 0.0049 17.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284164707|ref|YP_003402986.1| - 0.0066 16.5 0.1 0.02 15.0 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|284164707|ref|YP_003402986.1| - 0.019 15.1 0.3 0.049 13.8 0.3 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.6 gi|284164707|ref|YP_003402986.1| - 0.041 13.7 0.0 0.43 10.4 0.0 2.2 2 0 0 2 2 2 0 UBA-like domain NAD_binding_8 PF13450.6 gi|284164708|ref|YP_003402987.1| - 1.3e-13 50.9 0.2 3.1e-13 49.7 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|284164708|ref|YP_003402987.1| - 5.3e-12 45.8 0.3 3.7e-05 23.2 0.1 2.1 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.24 gi|284164708|ref|YP_003402987.1| - 0.025 14.2 7.4 0.12 12.0 7.2 2.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|284164708|ref|YP_003402987.1| - 0.049 13.6 0.1 0.45 10.5 0.1 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Peptidase_M24 PF00557.24 gi|284164709|ref|YP_003402988.1| - 3.2e-47 160.9 0.9 6.2e-47 160.0 0.9 1.5 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|284164709|ref|YP_003402988.1| - 1.8e-09 38.4 0.1 4.2e-09 37.1 0.1 1.7 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain TAT_signal PF10518.9 gi|284164710|ref|YP_003402989.1| - 0.0023 17.7 1.8 0.004 16.9 1.8 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PCC_BT PF18140.1 gi|284164710|ref|YP_003402989.1| - 0.0089 16.4 0.0 0.044 14.1 0.0 2.1 1 1 0 1 1 1 1 Propionyl-coenzyme A carboxylase BT domain DUF2092 PF09865.9 gi|284164710|ref|YP_003402989.1| - 0.032 13.6 0.0 0.068 12.5 0.0 1.6 1 1 0 1 1 1 0 Predicted periplasmic protein (DUF2092) EPSP_synthase PF00275.20 gi|284164711|ref|YP_003402990.1| - 1.7e-110 369.6 0.0 2e-110 369.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CopC PF04234.12 gi|284164712|ref|YP_003402991.1| - 0.008 17.2 0.2 0.55 11.3 0.1 2.5 2 0 0 2 2 2 1 CopC domain UCR_Fe-S_N PF10399.9 gi|284164712|ref|YP_003402991.1| - 0.045 13.1 1.9 0.1 12.0 1.9 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|284164712|ref|YP_003402991.1| - 0.059 13.2 3.9 0.1 12.5 3.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Thiolase_N PF00108.23 gi|284164713|ref|YP_003402992.1| - 4.9e-73 245.7 2.7 6.6e-73 245.3 2.7 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284164713|ref|YP_003402992.1| - 6.2e-42 142.1 0.1 1.2e-41 141.3 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284164713|ref|YP_003402992.1| - 4.3e-09 36.3 2.2 5.7e-09 35.9 1.2 1.7 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|284164713|ref|YP_003402992.1| - 0.16 11.9 3.2 0.79 9.6 0.3 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MFS_1 PF07690.16 gi|284164714|ref|YP_003402993.1| - 2.7e-51 174.6 55.4 6.6e-38 130.5 25.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|284164714|ref|YP_003402993.1| - 1.7e-06 27.2 29.7 0.0039 16.1 4.8 3.8 2 2 1 3 3 3 3 Sugar (and other) transporter OATP PF03137.20 gi|284164714|ref|YP_003402993.1| - 0.0056 15.0 0.1 0.0056 15.0 0.1 2.9 3 0 0 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 gi|284164714|ref|YP_003402993.1| - 0.014 14.7 29.6 0.02 14.2 29.6 1.0 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB TAT_signal PF10518.9 gi|284164715|ref|YP_003402994.1| - 0.025 14.4 2.4 0.036 13.9 2.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Chorismate_synt PF01264.21 gi|284164716|ref|YP_003402995.1| - 4.2e-122 407.0 0.0 4.8e-122 406.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Glyoxalase_4 PF13669.6 gi|284164717|ref|YP_003402996.1| - 1.5e-31 108.9 0.0 2.2e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|284164717|ref|YP_003402996.1| - 0.00019 21.6 0.0 0.00025 21.2 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|284164717|ref|YP_003402996.1| - 0.036 14.3 0.0 0.047 13.9 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OsmC PF02566.19 gi|284164718|ref|YP_003402997.1| - 2.4e-17 63.2 0.0 3.2e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein E1_dh PF00676.20 gi|284164719|ref|YP_003402998.1| - 2.1e-92 309.3 0.0 2.5e-92 309.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|284164719|ref|YP_003402998.1| - 3e-08 33.6 1.1 2.3e-07 30.7 1.1 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|284164719|ref|YP_003402998.1| - 1.7e-05 23.9 0.1 2.3e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|284164719|ref|YP_003402998.1| - 0.00042 19.6 0.4 0.0016 17.7 0.0 2.0 2 1 0 2 2 2 1 1-deoxy-D-xylulose-5-phosphate synthase SHOCT PF09851.9 gi|284164719|ref|YP_003402998.1| - 0.013 15.3 3.0 0.052 13.3 3.0 2.1 1 0 0 1 1 1 0 Short C-terminal domain DUF2188 PF09954.9 gi|284164719|ref|YP_003402998.1| - 0.068 13.3 0.5 0.29 11.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) DUF1451 PF07295.11 gi|284164719|ref|YP_003402998.1| - 0.23 11.5 0.7 0.48 10.4 0.7 1.5 1 0 0 1 1 1 0 Zinc-ribbon containing domain Transket_pyr PF02779.24 gi|284164720|ref|YP_003402999.1| - 5.7e-45 153.2 0.6 4e-44 150.4 0.8 1.9 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|284164720|ref|YP_003402999.1| - 6.9e-34 116.4 0.1 1.4e-33 115.4 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain NAD_kinase PF01513.21 gi|284164721|ref|YP_003403000.1| - 3.7e-14 52.6 0.7 4.9e-14 52.2 0.7 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|284164721|ref|YP_003403000.1| - 9.3e-07 28.5 1.9 1.6e-06 27.7 0.5 2.1 2 1 1 3 3 3 1 Diacylglycerol kinase catalytic domain E3_binding PF02817.17 gi|284164722|ref|YP_003403001.1| - 1.6e-27 95.5 0.7 1.6e-12 47.5 0.0 2.6 2 0 0 2 2 2 2 e3 binding domain 2-oxoacid_dh PF00198.23 gi|284164722|ref|YP_003403001.1| - 4.5e-17 62.3 0.2 6.6e-17 61.7 0.2 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|284164722|ref|YP_003403001.1| - 6e-16 58.0 1.4 1.4e-15 56.8 1.4 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|284164722|ref|YP_003403001.1| - 7.9e-06 25.6 0.0 0.011 15.5 0.0 2.6 2 0 0 2 2 2 2 Biotin-lipoyl like QRPTase_N PF02749.16 gi|284164722|ref|YP_003403001.1| - 0.042 13.9 0.1 1.4 9.1 0.1 2.8 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain HlyD_3 PF13437.6 gi|284164722|ref|YP_003403001.1| - 0.069 13.9 4.5 0.89 10.3 0.3 3.4 2 1 1 3 3 3 0 HlyD family secretion protein Abhydrolase_3 PF07859.13 gi|284164723|ref|YP_003403002.1| - 5.1e-75 252.0 0.2 6.3e-75 251.7 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|284164723|ref|YP_003403002.1| - 8.2e-08 31.6 0.0 2.4e-07 30.0 0.0 1.6 1 1 0 1 1 1 1 Carboxylesterase family Chlorophyllase2 PF12740.7 gi|284164723|ref|YP_003403002.1| - 0.0058 15.6 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.21 gi|284164723|ref|YP_003403002.1| - 0.021 14.3 0.1 0.12 11.8 0.1 2.0 1 1 0 1 1 1 0 Prolyl oligopeptidase family Say1_Mug180 PF10340.9 gi|284164723|ref|YP_003403002.1| - 0.31 9.9 0.0 0.42 9.4 0.0 1.1 1 0 0 1 1 1 0 Steryl acetyl hydrolase POR_N PF01855.19 gi|284164724|ref|YP_003403003.1| - 7.6e-51 173.1 0.0 1.4e-50 172.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|284164724|ref|YP_003403003.1| - 5.7e-45 153.5 0.0 1.2e-44 152.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|284164724|ref|YP_003403003.1| - 1.1e-08 35.3 0.0 2.2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|284164724|ref|YP_003403003.1| - 0.0018 18.2 0.0 0.0044 16.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|284164724|ref|YP_003403003.1| - 0.0053 16.4 0.1 0.01 15.5 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|284164725|ref|YP_003403004.1| - 3.5e-32 111.3 0.0 5.5e-32 110.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|284164725|ref|YP_003403004.1| - 0.19 11.9 1.5 0.56 10.4 1.5 1.8 1 1 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Colicin_V PF02674.16 gi|284164727|ref|YP_003403006.1| - 0.019 14.9 4.0 0.074 13.0 4.0 1.7 1 1 0 1 1 1 0 Colicin V production protein Neurensin PF14927.6 gi|284164727|ref|YP_003403006.1| - 3.6 7.3 6.5 0.82 9.4 0.8 2.2 1 1 1 2 2 2 0 Neurensin DUF202 PF02656.15 gi|284164727|ref|YP_003403006.1| - 6.1 7.4 10.3 1.1 9.8 3.4 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF202) HTH_24 PF13412.6 gi|284164728|ref|YP_003403007.1| - 5.2e-14 51.5 0.0 9.2e-14 50.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|284164728|ref|YP_003403007.1| - 2e-13 50.1 0.0 3.4e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|284164728|ref|YP_003403007.1| - 2.8e-09 36.6 0.0 5.8e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284164728|ref|YP_003403007.1| - 2.7e-08 33.6 0.0 7.5e-08 32.2 0.0 1.8 1 1 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|284164728|ref|YP_003403007.1| - 6.3e-07 29.0 0.0 1.2e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|284164728|ref|YP_003403007.1| - 9.4e-07 28.5 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284164728|ref|YP_003403007.1| - 1.7e-06 28.1 0.2 5.5e-06 26.5 0.1 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|284164728|ref|YP_003403007.1| - 5.2e-06 26.3 0.0 1.1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|284164728|ref|YP_003403007.1| - 2.8e-05 23.8 0.0 5.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|284164728|ref|YP_003403007.1| - 3.5e-05 23.6 0.0 7.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284164728|ref|YP_003403007.1| - 3.9e-05 23.4 0.0 7.7e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284164728|ref|YP_003403007.1| - 4e-05 23.6 0.0 8.8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|284164728|ref|YP_003403007.1| - 4.4e-05 23.8 0.1 0.00025 21.3 0.0 2.0 1 1 1 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|284164728|ref|YP_003403007.1| - 5.3e-05 23.0 0.0 0.0004 20.2 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_29 PF13551.6 gi|284164728|ref|YP_003403007.1| - 0.00015 21.7 0.0 0.00029 20.8 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn helix TrmB PF01978.19 gi|284164728|ref|YP_003403007.1| - 0.0002 21.2 0.1 0.00038 20.3 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|284164728|ref|YP_003403007.1| - 0.00023 21.2 0.0 0.00045 20.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284164728|ref|YP_003403007.1| - 0.00033 20.6 0.0 0.00065 19.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FaeA PF04703.12 gi|284164728|ref|YP_003403007.1| - 0.00037 20.8 0.0 0.00059 20.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein GntR PF00392.21 gi|284164728|ref|YP_003403007.1| - 0.00052 19.6 0.1 0.0015 18.1 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family LacI PF00356.21 gi|284164728|ref|YP_003403007.1| - 0.00081 19.1 0.0 0.015 15.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.12 gi|284164728|ref|YP_003403007.1| - 0.0018 17.9 0.0 0.004 16.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_45 PF14947.6 gi|284164728|ref|YP_003403007.1| - 0.002 18.1 0.0 0.0037 17.2 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_Mga PF08280.11 gi|284164728|ref|YP_003403007.1| - 0.0027 17.7 0.0 0.0051 16.8 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain DUF4110 PF13422.6 gi|284164728|ref|YP_003403007.1| - 0.0064 16.5 0.1 0.013 15.6 0.0 1.5 2 0 0 2 2 1 1 Domain of unknown function (DUF4110) TFIIE_alpha PF02002.17 gi|284164728|ref|YP_003403007.1| - 0.0068 16.3 0.1 0.0092 15.8 0.1 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_10 PF04967.12 gi|284164728|ref|YP_003403007.1| - 0.01 15.6 0.1 0.027 14.3 0.1 1.7 2 0 0 2 2 1 0 HTH DNA binding domain HTH_47 PF16221.5 gi|284164728|ref|YP_003403007.1| - 0.014 15.0 0.1 0.03 13.9 0.0 1.6 2 0 0 2 2 2 0 winged helix-turn-helix HTH_6 PF01418.17 gi|284164728|ref|YP_003403007.1| - 0.016 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_27 PF13463.6 gi|284164728|ref|YP_003403007.1| - 0.032 14.7 0.1 0.083 13.4 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|284164728|ref|YP_003403007.1| - 0.035 13.6 0.2 0.078 12.5 0.0 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 TetR_N PF00440.23 gi|284164728|ref|YP_003403007.1| - 0.036 13.9 0.1 0.068 13.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_1 PF00126.27 gi|284164728|ref|YP_003403007.1| - 0.037 14.0 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|284164728|ref|YP_003403007.1| - 0.038 14.1 0.1 0.086 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.6 gi|284164728|ref|YP_003403007.1| - 0.052 13.0 0.0 0.078 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 RPA_C PF08784.11 gi|284164728|ref|YP_003403007.1| - 0.057 14.1 0.0 0.1 13.3 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_40 PF14493.6 gi|284164728|ref|YP_003403007.1| - 0.068 13.6 0.0 0.1 13.1 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_32 PF13565.6 gi|284164728|ref|YP_003403007.1| - 0.078 13.6 0.1 0.18 12.5 0.1 1.7 1 1 0 1 1 1 0 Homeodomain-like domain Phage_NinH PF06322.11 gi|284164728|ref|YP_003403007.1| - 0.1 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Phage NinH protein HTH_30 PF13556.6 gi|284164728|ref|YP_003403007.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_31 PF13560.6 gi|284164728|ref|YP_003403007.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|284164728|ref|YP_003403007.1| - 0.11 11.4 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_7 PF02796.15 gi|284164728|ref|YP_003403007.1| - 0.11 12.5 0.1 0.33 11.1 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|284164728|ref|YP_003403007.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Polyketide_cyc PF03364.20 gi|284164729|ref|YP_003403008.1| - 2.4e-07 31.0 0.0 3.8e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|284164729|ref|YP_003403008.1| - 0.0042 17.4 1.4 0.0055 17.0 1.4 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport NosL PF05573.12 gi|284164730|ref|YP_003403009.1| - 5.2e-15 55.9 0.0 7.2e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 NosL EamA PF00892.20 gi|284164731|ref|YP_003403010.1| - 2.6e-31 108.6 34.0 4.8e-22 78.6 8.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family UAA PF08449.11 gi|284164731|ref|YP_003403010.1| - 0.00029 20.1 2.3 0.00038 19.8 2.0 1.4 1 1 0 1 1 1 1 UAA transporter family TPT PF03151.16 gi|284164731|ref|YP_003403010.1| - 0.082 12.2 2.2 0.14 11.5 2.2 1.4 1 0 0 1 1 1 0 Triose-phosphate Transporter family Methyltransf_25 PF13649.6 gi|284164732|ref|YP_003403011.1| - 4.8e-16 59.3 0.0 7.5e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164732|ref|YP_003403011.1| - 1.3e-12 48.2 0.0 2.1e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164732|ref|YP_003403011.1| - 3.6e-12 46.4 0.0 4.9e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164732|ref|YP_003403011.1| - 1.5e-10 41.1 0.0 1.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164732|ref|YP_003403011.1| - 1.7e-09 38.3 0.1 2.7e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|284164732|ref|YP_003403011.1| - 4.4e-09 36.0 0.0 5.3e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|284164732|ref|YP_003403011.1| - 2.7e-06 26.9 0.0 3.9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|284164732|ref|YP_003403011.1| - 0.00018 21.1 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|284164732|ref|YP_003403011.1| - 0.00024 20.8 0.0 0.00031 20.5 0.0 1.1 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|284164732|ref|YP_003403011.1| - 0.00069 19.3 0.0 0.001 18.7 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) DUF2188 PF09954.9 gi|284164732|ref|YP_003403011.1| - 0.041 14.0 0.2 0.086 13.0 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) 3HCDH_N PF02737.18 gi|284164732|ref|YP_003403011.1| - 0.084 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MetW PF07021.12 gi|284164732|ref|YP_003403011.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Redoxin PF08534.10 gi|284164733|ref|YP_003403012.1| - 8.3e-06 25.6 0.0 1.2e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|284164733|ref|YP_003403012.1| - 9.5e-06 25.5 0.0 1.5e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|284164733|ref|YP_003403012.1| - 3.4e-05 24.1 0.0 6.5e-05 23.2 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|284164733|ref|YP_003403012.1| - 0.00042 20.3 0.0 0.031 14.3 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|284164733|ref|YP_003403012.1| - 0.077 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain TrkA_N PF02254.18 gi|284164734|ref|YP_003403013.1| - 1e-36 125.7 3.2 2.1e-24 86.0 1.1 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|284164734|ref|YP_003403013.1| - 4.6e-25 87.2 7.9 7.4e-13 48.1 0.1 3.5 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|284164734|ref|YP_003403013.1| - 6.9e-10 39.3 1.9 9.3e-06 26.0 0.7 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|284164734|ref|YP_003403013.1| - 5.4e-08 33.0 0.1 0.00019 21.5 0.2 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|284164734|ref|YP_003403013.1| - 2e-07 31.3 2.1 0.00031 21.0 0.5 3.6 2 2 1 3 3 3 2 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|284164734|ref|YP_003403013.1| - 1.6e-06 28.6 1.7 0.0018 18.8 0.3 3.5 3 1 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|284164734|ref|YP_003403013.1| - 6e-06 26.0 0.1 1.9e-05 24.3 0.1 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|284164734|ref|YP_003403013.1| - 7.1e-06 26.0 9.5 0.0054 16.6 5.9 3.0 2 2 0 2 2 2 2 NAD(P)H-binding Pyr_redox PF00070.27 gi|284164734|ref|YP_003403013.1| - 1.1e-05 25.9 0.0 0.62 10.7 0.0 3.9 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|284164734|ref|YP_003403013.1| - 5.4e-05 23.2 1.2 0.17 11.7 0.7 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|284164734|ref|YP_003403013.1| - 6.2e-05 22.7 0.6 0.0026 17.4 0.2 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase Castor_Poll_mid PF06241.12 gi|284164734|ref|YP_003403013.1| - 0.00011 22.1 0.0 0.015 15.3 0.0 2.6 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel NAD_binding_2 PF03446.15 gi|284164734|ref|YP_003403013.1| - 0.00013 22.2 0.2 0.021 15.0 0.1 2.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|284164734|ref|YP_003403013.1| - 0.00029 20.2 0.4 0.0052 16.1 0.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|284164734|ref|YP_003403013.1| - 0.00031 20.7 0.1 0.0066 16.4 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|284164734|ref|YP_003403013.1| - 0.00088 18.9 1.0 0.015 14.9 0.2 2.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|284164734|ref|YP_003403013.1| - 0.0016 17.7 0.1 0.011 15.1 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain DUF1188 PF06690.11 gi|284164734|ref|YP_003403013.1| - 0.085 12.4 0.4 1.1 8.8 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1188) NAD_binding_8 PF13450.6 gi|284164734|ref|YP_003403013.1| - 0.1 12.8 0.1 1.1 9.6 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.21 gi|284164734|ref|YP_003403013.1| - 0.14 11.6 3.3 0.1 12.1 0.5 2.1 3 0 0 3 3 3 0 NAD dependent epimerase/dehydratase family ThiF PF00899.21 gi|284164734|ref|YP_003403013.1| - 1.8 7.9 3.9 2 7.7 0.2 2.6 2 1 1 3 3 3 0 ThiF family Rossmann-like PF10727.9 gi|284164734|ref|YP_003403013.1| - 3 7.7 5.7 13 5.7 2.5 3.1 2 1 0 2 2 2 0 Rossmann-like domain PQQ_3 PF13570.6 gi|284164735|ref|YP_003403014.1| - 2.9e-54 180.3 49.4 1.2e-12 47.9 0.7 10.0 9 0 0 9 9 9 7 PQQ-like domain PQQ_2 PF13360.6 gi|284164735|ref|YP_003403014.1| - 8.2e-53 179.4 27.7 2.2e-23 83.1 4.4 4.4 2 1 2 4 4 4 3 PQQ-like domain Cnd1 PF12717.7 gi|284164735|ref|YP_003403014.1| - 2.7e-41 141.3 10.0 3.6e-12 46.6 0.6 9.1 5 3 4 9 9 9 8 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|284164735|ref|YP_003403014.1| - 2e-35 121.0 149.4 5.9e-06 26.6 1.1 13.4 3 3 9 14 14 14 12 HEAT repeats PQQ PF01011.21 gi|284164735|ref|YP_003403014.1| - 1e-34 116.8 10.7 1.4e-09 37.4 0.1 7.8 7 0 0 7 7 7 6 PQQ enzyme repeat HEAT_EZ PF13513.6 gi|284164735|ref|YP_003403014.1| - 7.8e-26 90.1 121.1 0.00026 21.4 1.1 18.8 11 5 8 19 19 19 15 HEAT-like repeat Adaptin_N PF01602.20 gi|284164735|ref|YP_003403014.1| - 1.5e-23 83.2 13.2 1e-09 37.6 0.2 6.9 3 2 1 5 5 5 4 Adaptin N terminal region HEAT PF02985.22 gi|284164735|ref|YP_003403014.1| - 3.1e-15 55.0 87.2 0.00091 19.3 0.7 20.0 21 0 0 21 21 21 6 HEAT repeat RTP1_C1 PF10363.9 gi|284164735|ref|YP_003403014.1| - 8.3e-10 38.8 0.4 0.081 13.1 0.0 7.0 6 4 0 6 6 6 2 Required for nuclear transport of RNA pol II C-terminus 1 Arm PF00514.23 gi|284164735|ref|YP_003403014.1| - 1.9e-09 37.2 38.3 0.023 14.7 0.5 12.8 16 0 0 16 16 14 5 Armadillo/beta-catenin-like repeat TIP120 PF08623.10 gi|284164735|ref|YP_003403014.1| - 3.7e-08 33.3 1.0 0.6 9.9 0.1 5.6 5 1 1 6 6 6 2 TATA-binding protein interacting (TIP20) MMS19_N PF14500.6 gi|284164735|ref|YP_003403014.1| - 2.2e-07 30.7 10.6 0.16 11.5 0.1 8.0 8 2 1 9 9 9 1 Dos2-interacting transcription regulator of RNA-Pol-II Vitellogenin_N PF01347.22 gi|284164735|ref|YP_003403014.1| - 0.0009 17.8 1.1 0.057 11.8 0.0 3.4 3 1 1 4 4 4 2 Lipoprotein amino terminal region CLASP_N PF12348.8 gi|284164735|ref|YP_003403014.1| - 0.0035 16.9 13.5 12 5.3 0.7 7.3 6 2 3 9 9 9 0 CLASP N terminal DNA_alkylation PF08713.11 gi|284164735|ref|YP_003403014.1| - 0.26 11.0 5.7 8.3 6.1 0.1 4.6 4 2 1 5 5 5 0 DNA alkylation repair enzyme Cohesin_HEAT PF12765.7 gi|284164735|ref|YP_003403014.1| - 0.87 9.9 23.0 0.19 12.1 0.3 6.9 6 0 0 6 6 6 0 HEAT repeat associated with sister chromatid cohesion DUF4042 PF13251.6 gi|284164735|ref|YP_003403014.1| - 2.1 8.0 9.3 18 5.0 0.1 5.5 5 2 2 7 7 7 0 Domain of unknown function (DUF4042) SBP_bac_5 PF00496.22 gi|284164736|ref|YP_003403015.1| - 8.4e-57 192.8 0.1 1.1e-56 192.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle AA_permease_2 PF13520.6 gi|284164737|ref|YP_003403016.1| - 2.3e-32 112.4 40.4 3e-32 112.0 40.4 1.1 1 0 0 1 1 1 1 Amino acid permease Topoisom_bac PF01131.20 gi|284164738|ref|YP_003403017.1| - 3.7e-123 411.6 0.0 4.6e-123 411.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|284164738|ref|YP_003403017.1| - 7.9e-21 73.6 14.3 8.3e-14 51.1 1.0 3.6 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|284164738|ref|YP_003403017.1| - 6.9e-17 61.6 0.1 1.4e-16 60.6 0.1 1.6 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|284164738|ref|YP_003403017.1| - 1.5e-08 35.1 1.7 2.7e-08 34.3 0.1 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|284164738|ref|YP_003403017.1| - 0.00088 19.1 0.1 0.0042 16.9 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|284164738|ref|YP_003403017.1| - 0.0063 16.7 0.0 0.017 15.4 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|284164738|ref|YP_003403017.1| - 0.037 13.9 0.0 0.14 12.1 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|284164738|ref|YP_003403017.1| - 0.17 12.1 0.0 0.36 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) zinc_ribbon_2 PF13240.6 gi|284164738|ref|YP_003403017.1| - 0.51 10.1 2.8 18 5.2 0.1 2.9 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|284164738|ref|YP_003403017.1| - 0.66 9.8 2.0 30 4.4 0.2 2.7 2 0 0 2 2 2 0 Rubredoxin metal binding domain Rotamase_2 PF13145.6 gi|284164738|ref|YP_003403017.1| - 0.92 10.4 6.1 0.38 11.6 0.2 2.8 3 0 0 3 3 3 0 PPIC-type PPIASE domain TF_Zn_Ribbon PF08271.12 gi|284164738|ref|YP_003403017.1| - 1.8 8.2 9.0 3.1 7.4 0.1 4.0 3 1 1 4 4 4 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|284164738|ref|YP_003403017.1| - 2.2 8.5 13.5 5.9 7.1 0.1 4.3 3 1 1 4 4 4 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|284164738|ref|YP_003403017.1| - 5.9 6.9 5.8 2.8 7.9 0.1 2.9 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Methyltransf_21 PF05050.12 gi|284164739|ref|YP_003403018.1| - 9.5e-16 58.3 0.0 1.4e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|284164739|ref|YP_003403018.1| - 7e-05 22.7 0.0 9.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|284164739|ref|YP_003403018.1| - 8.7e-05 21.9 0.0 0.00012 21.4 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein HicA_toxin PF07927.12 gi|284164739|ref|YP_003403018.1| - 0.13 12.4 0.0 2.6 8.2 0.0 2.4 2 0 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, Glyco_hydro_97 PF10566.9 gi|284164740|ref|YP_003403019.1| - 6.8e-92 307.7 0.0 1.1e-91 307.1 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|284164740|ref|YP_003403019.1| - 3.5e-61 206.7 0.0 8.5e-61 205.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 N-terminal Glucodextran_C PF09985.9 gi|284164740|ref|YP_003403019.1| - 3.8e-55 186.8 0.0 6.9e-55 186.0 0.0 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase GH97_C PF14509.6 gi|284164740|ref|YP_003403019.1| - 3.2e-27 94.6 0.0 6.7e-27 93.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Cadherin-like PF12733.7 gi|284164740|ref|YP_003403019.1| - 3.1 8.4 6.0 1.1 9.8 0.1 3.1 3 0 0 3 3 3 0 Cadherin-like beta sandwich domain MatE PF01554.18 gi|284164741|ref|YP_003403020.1| - 1.3e-60 203.7 30.4 4.9e-37 127.1 12.0 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|284164741|ref|YP_003403020.1| - 1.6e-07 31.4 11.3 1.6e-07 31.4 11.3 5.1 2 2 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Thi4 PF01946.17 gi|284164742|ref|YP_003403021.1| - 2.9e-60 203.4 0.4 1.9e-57 194.2 0.4 2.2 1 1 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|284164742|ref|YP_003403021.1| - 3.1e-11 43.3 0.3 4.6e-11 42.7 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284164742|ref|YP_003403021.1| - 4.8e-11 42.4 0.3 8.6e-08 31.7 0.2 2.3 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 gi|284164742|ref|YP_003403021.1| - 3.1e-10 40.2 0.5 1.1e-05 25.2 0.2 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284164742|ref|YP_003403021.1| - 1.6e-09 37.5 0.0 3.2e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284164742|ref|YP_003403021.1| - 2.3e-08 34.2 0.1 4.9e-08 33.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284164742|ref|YP_003403021.1| - 2.7e-08 33.4 0.1 6.6e-08 32.1 0.0 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284164742|ref|YP_003403021.1| - 5.2e-07 28.7 0.0 7.2e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|284164742|ref|YP_003403021.1| - 4.3e-05 22.9 0.0 8.7e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284164742|ref|YP_003403021.1| - 0.00021 21.8 0.7 0.00054 20.5 0.2 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|284164742|ref|YP_003403021.1| - 0.00025 20.2 0.1 0.0097 15.0 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|284164742|ref|YP_003403021.1| - 0.00028 19.9 0.1 0.075 11.9 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Shikimate_DH PF01488.20 gi|284164742|ref|YP_003403021.1| - 0.00071 19.6 0.0 0.06 13.4 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|284164742|ref|YP_003403021.1| - 0.00081 18.8 0.0 0.0028 17.0 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|284164742|ref|YP_003403021.1| - 0.0012 18.0 0.1 0.0021 17.2 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|284164742|ref|YP_003403021.1| - 0.0016 18.8 0.0 0.0038 17.6 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|284164742|ref|YP_003403021.1| - 0.0021 18.0 0.2 0.0068 16.4 0.1 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding Glu_dehyd_C PF16912.5 gi|284164742|ref|YP_003403021.1| - 0.0022 17.5 0.1 0.48 9.9 0.1 2.5 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|284164742|ref|YP_003403021.1| - 0.025 14.9 0.4 0.057 13.7 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain zf-ribbon_3 PF13248.6 gi|284164743|ref|YP_003403022.1| - 0.0034 16.7 0.2 0.008 15.6 0.1 1.7 2 0 0 2 2 2 1 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|284164743|ref|YP_003403022.1| - 0.017 15.2 0.3 0.017 15.2 0.3 1.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Flavi_glycoprot PF00869.20 gi|284164743|ref|YP_003403022.1| - 0.068 12.4 0.3 0.083 12.1 0.3 1.0 1 0 0 1 1 1 0 Flavivirus glycoprotein, central and dimerisation domains 4HBT PF03061.22 gi|284164745|ref|YP_003403024.1| - 3e-17 62.7 0.1 4.9e-17 62.1 0.1 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|284164745|ref|YP_003403024.1| - 2.9e-16 60.1 0.0 3.4e-16 59.9 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|284164745|ref|YP_003403024.1| - 1.2e-10 41.2 0.0 1e-06 28.2 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT_3 PF13622.6 gi|284164745|ref|YP_003403024.1| - 0.13 12.5 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily UPF0014 PF03649.13 gi|284164746|ref|YP_003403025.1| - 4.2e-56 190.0 22.5 4.7e-56 189.8 22.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0014) ABC_tran PF00005.27 gi|284164747|ref|YP_003403026.1| - 1.5e-33 116.2 0.0 1.9e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164747|ref|YP_003403026.1| - 1e-09 38.7 0.1 0.0004 20.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284164747|ref|YP_003403026.1| - 9.8e-06 25.2 0.0 0.052 13.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284164747|ref|YP_003403026.1| - 0.00012 22.5 0.3 0.00022 21.7 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284164747|ref|YP_003403026.1| - 0.003 17.5 0.0 0.0056 16.6 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|284164747|ref|YP_003403026.1| - 0.0047 17.2 0.0 0.018 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|284164747|ref|YP_003403026.1| - 0.0052 16.5 0.0 0.011 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|284164747|ref|YP_003403026.1| - 0.0052 16.7 0.0 2.8 7.8 0.0 2.2 2 0 0 2 2 2 2 NACHT domain AAA_29 PF13555.6 gi|284164747|ref|YP_003403026.1| - 0.0065 16.2 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|284164747|ref|YP_003403026.1| - 0.027 13.8 0.0 0.048 12.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_15 PF13175.6 gi|284164747|ref|YP_003403026.1| - 0.037 13.7 0.0 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 gi|284164747|ref|YP_003403026.1| - 0.058 13.6 0.1 3 8.2 0.1 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|284164747|ref|YP_003403026.1| - 0.077 13.1 0.1 0.14 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|284164747|ref|YP_003403026.1| - 0.11 12.6 0.1 0.6 10.2 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|284164747|ref|YP_003403026.1| - 0.11 13.1 0.2 0.5 10.9 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284164747|ref|YP_003403026.1| - 0.2 12.1 0.0 0.31 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.12 gi|284164748|ref|YP_003403027.1| - 1.7e-14 54.2 0.0 2.8e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164748|ref|YP_003403027.1| - 9.5e-14 51.4 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284164748|ref|YP_003403027.1| - 5.2e-13 49.5 0.0 8.4e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164748|ref|YP_003403027.1| - 1.6e-11 44.8 0.0 2.5e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284164748|ref|YP_003403027.1| - 5.8e-11 42.5 0.0 6.8e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284164748|ref|YP_003403027.1| - 5.1e-07 29.7 0.0 6.9e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|284164748|ref|YP_003403027.1| - 1.7e-06 27.6 0.0 2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|284164748|ref|YP_003403027.1| - 0.00021 21.5 0.0 0.00034 20.8 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Fibrillarin PF01269.17 gi|284164748|ref|YP_003403027.1| - 0.0052 15.9 0.0 0.0076 15.4 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin CMAS PF02353.20 gi|284164748|ref|YP_003403027.1| - 0.081 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|284164748|ref|YP_003403027.1| - 0.094 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|284164748|ref|YP_003403027.1| - 0.095 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase ThiP_synth PF10120.9 gi|284164749|ref|YP_003403028.1| - 2.3e-53 180.2 0.1 3.5e-53 179.6 0.1 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|284164749|ref|YP_003403028.1| - 4.1e-07 30.0 0.0 8.6e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|284164749|ref|YP_003403028.1| - 0.00014 22.1 0.3 0.00054 20.2 0.3 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284164749|ref|YP_003403028.1| - 0.00019 20.8 0.0 0.00053 19.4 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284164749|ref|YP_003403028.1| - 0.00021 21.1 0.1 0.0032 17.3 0.0 2.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|284164749|ref|YP_003403028.1| - 0.0003 20.3 0.0 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|284164749|ref|YP_003403028.1| - 0.00076 19.2 0.0 0.0025 17.6 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|284164749|ref|YP_003403028.1| - 0.00081 19.3 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|284164749|ref|YP_003403028.1| - 0.021 15.2 0.0 0.042 14.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain P22_Cro PF14549.6 gi|284164749|ref|YP_003403028.1| - 0.024 14.5 0.2 0.078 12.8 0.1 1.9 2 0 0 2 2 1 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|284164749|ref|YP_003403028.1| - 0.029 14.2 0.0 0.073 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_19 PF12844.7 gi|284164749|ref|YP_003403028.1| - 0.03 14.3 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284164749|ref|YP_003403028.1| - 0.033 14.1 0.3 0.3 11.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HNF-1_N PF04814.13 gi|284164749|ref|YP_003403028.1| - 0.05 14.2 0.0 0.091 13.4 0.0 1.4 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Sigma70_r4_2 PF08281.12 gi|284164749|ref|YP_003403028.1| - 0.052 13.2 0.0 0.15 11.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|284164749|ref|YP_003403028.1| - 0.12 12.4 1.0 1.3 9.2 0.0 3.0 4 0 0 4 4 4 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|284164749|ref|YP_003403028.1| - 0.16 12.2 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284164749|ref|YP_003403028.1| - 0.74 9.7 0.0 0.74 9.7 0.0 3.0 4 0 0 4 4 4 0 IclR helix-turn-helix domain DCD PF06559.11 gi|284164750|ref|YP_003403029.1| - 2.9e-16 59.2 0.0 6.2e-14 51.6 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|284164750|ref|YP_003403029.1| - 1.6e-13 50.4 0.0 2.2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase CDH-cyt PF16010.5 gi|284164751|ref|YP_003403030.1| - 0.051 13.2 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Cytochrome domain of cellobiose dehydrogenase PTH2 PF01981.16 gi|284164752|ref|YP_003403031.1| - 4.3e-40 136.6 0.1 4.8e-40 136.5 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF2157 PF09925.9 gi|284164753|ref|YP_003403032.1| - 0.12 12.1 2.9 0.15 11.9 2.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF3017 PF11222.8 gi|284164753|ref|YP_003403032.1| - 0.59 10.4 9.6 3.1 8.1 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) TruD PF01142.18 gi|284164754|ref|YP_003403033.1| - 2.4e-166 553.7 0.0 2.7e-166 553.5 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF5362 PF17319.2 gi|284164756|ref|YP_003403035.1| - 0.03 14.2 6.1 0.03 14.2 6.1 2.5 3 0 0 3 3 3 0 Family of unknown function (DUF5362) DUF3995 PF13160.6 gi|284164756|ref|YP_003403035.1| - 0.1 12.9 18.3 0.23 11.8 4.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3995) zf-ribbon_3 PF13248.6 gi|284164757|ref|YP_003403036.1| - 3.1e-12 45.5 12.3 2.6e-06 26.7 1.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|284164757|ref|YP_003403036.1| - 1.5e-11 44.1 10.0 2.3e-11 43.5 10.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|284164757|ref|YP_003403036.1| - 3.3e-11 42.5 13.9 1.4e-05 24.7 1.5 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|284164757|ref|YP_003403036.1| - 8.3e-10 39.3 4.0 0.00052 20.7 0.6 2.1 2 0 0 2 2 2 2 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|284164757|ref|YP_003403036.1| - 5.5e-05 23.1 9.0 0.00079 19.4 2.8 2.3 1 1 1 2 2 2 2 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|284164757|ref|YP_003403036.1| - 8.1e-05 22.5 7.8 0.0078 16.1 0.6 3.2 1 1 2 3 3 3 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|284164757|ref|YP_003403036.1| - 0.00041 20.2 10.6 0.16 11.9 0.0 3.7 3 1 0 3 3 3 2 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|284164757|ref|YP_003403036.1| - 0.00046 19.6 13.8 0.11 12.1 2.6 3.5 2 1 0 3 3 3 2 TFIIB zinc-binding HypA PF01155.19 gi|284164757|ref|YP_003403036.1| - 0.0032 17.5 7.4 0.31 11.1 0.5 2.4 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|284164757|ref|YP_003403036.1| - 0.0062 16.2 13.5 0.15 11.8 0.1 3.9 3 1 1 4 4 4 1 NADH pyrophosphatase zinc ribbon domain DUF3090 PF11290.8 gi|284164757|ref|YP_003403036.1| - 0.0081 16.0 2.5 0.17 11.7 0.7 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF3090) Zn-ribbon_8 PF09723.10 gi|284164757|ref|YP_003403036.1| - 0.014 15.4 17.7 0.24 11.5 4.5 3.8 1 1 3 4 4 4 0 Zinc ribbon domain UPF0547 PF10571.9 gi|284164757|ref|YP_003403036.1| - 0.016 15.3 2.1 0.016 15.3 2.1 2.8 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 NMD3 PF04981.13 gi|284164757|ref|YP_003403036.1| - 0.017 14.6 2.1 0.035 13.6 2.1 1.5 1 1 0 1 1 1 0 NMD3 family Zn_Tnp_IS1595 PF12760.7 gi|284164757|ref|YP_003403036.1| - 0.019 14.9 16.0 0.076 13.0 0.6 4.0 1 1 3 4 4 4 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.6 gi|284164757|ref|YP_003403036.1| - 0.043 13.7 11.5 0.065 13.2 1.9 3.1 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 RNA_POL_M_15KD PF02150.16 gi|284164757|ref|YP_003403036.1| - 0.044 13.6 0.2 0.044 13.6 0.2 3.0 2 1 1 3 3 3 0 RNA polymerases M/15 Kd subunit DUF2116 PF09889.9 gi|284164757|ref|YP_003403036.1| - 0.058 13.4 0.5 1.2 9.2 0.2 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) TackOD1 PF18551.1 gi|284164757|ref|YP_003403036.1| - 0.062 13.0 5.0 0.36 10.5 5.0 1.9 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zf-C4_Topoisom PF01396.19 gi|284164757|ref|YP_003403036.1| - 0.071 12.9 11.2 5.7 6.8 0.1 4.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF35_N PF12172.8 gi|284164757|ref|YP_003403036.1| - 0.086 12.7 16.2 1.6 8.7 3.6 3.2 2 2 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbon_6 PF10005.9 gi|284164757|ref|YP_003403036.1| - 0.1 13.3 2.9 8.9 7.1 0.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DHHC PF01529.20 gi|284164757|ref|YP_003403036.1| - 0.18 11.9 2.0 7.3 6.7 0.2 2.7 3 0 0 3 3 3 0 DHHC palmitoyltransferase DUF1610 PF07754.11 gi|284164757|ref|YP_003403036.1| - 0.22 11.5 22.4 0.9 9.6 0.6 4.4 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) tRNA-synt_1g PF09334.11 gi|284164757|ref|YP_003403036.1| - 0.24 10.1 1.1 0.35 9.6 1.1 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-IS66 PF13005.7 gi|284164757|ref|YP_003403036.1| - 0.24 11.8 15.9 2.1 8.8 0.0 4.2 2 1 2 4 4 4 0 zinc-finger binding domain of transposase IS66 zf-C3HC4_3 PF13920.6 gi|284164757|ref|YP_003403036.1| - 0.28 11.1 7.0 2.4 8.1 2.6 2.8 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS91 PF14319.6 gi|284164757|ref|YP_003403036.1| - 0.43 10.6 7.1 2.5 8.2 0.8 2.7 1 1 1 2 2 2 0 Transposase zinc-binding domain Cript PF10235.9 gi|284164757|ref|YP_003403036.1| - 0.56 10.8 4.0 3.2 8.4 0.4 2.2 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT zf-RRN7 PF11781.8 gi|284164757|ref|YP_003403036.1| - 0.9 9.3 16.6 0.33 10.7 3.3 3.5 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Auto_anti-p27 PF06677.12 gi|284164757|ref|YP_003403036.1| - 0.94 9.7 14.0 6 7.1 0.3 3.8 2 1 3 5 5 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-LITAF-like PF10601.9 gi|284164757|ref|YP_003403036.1| - 1.1 9.6 13.8 13 6.1 0.2 4.4 2 2 1 3 3 3 0 LITAF-like zinc ribbon domain zf-TFIIB PF13453.6 gi|284164757|ref|YP_003403036.1| - 1.2 8.5 12.8 10 5.5 0.1 3.5 3 1 0 3 3 3 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.10 gi|284164757|ref|YP_003403036.1| - 1.3 8.8 12.4 15 5.5 0.2 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-UDP PF14569.6 gi|284164757|ref|YP_003403036.1| - 1.4 9.1 7.1 11 6.2 3.3 3.0 1 1 1 2 2 2 0 Zinc-binding RING-finger zf-ACC PF17848.1 gi|284164757|ref|YP_003403036.1| - 1.5 8.9 12.8 34 4.6 0.2 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf-C3HC4 PF00097.25 gi|284164757|ref|YP_003403036.1| - 1.6 8.7 5.0 7.8 6.5 0.2 3.1 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.6 gi|284164757|ref|YP_003403036.1| - 1.7 8.7 10.1 13 5.8 1.7 3.4 3 1 0 3 3 3 0 YhfH-like protein Rubredoxin PF00301.20 gi|284164757|ref|YP_003403036.1| - 1.8 8.7 14.3 19 5.4 0.1 4.2 3 1 1 4 4 4 0 Rubredoxin zf_UBZ PF18439.1 gi|284164757|ref|YP_003403036.1| - 2 8.1 11.2 21 4.8 0.2 4.1 2 2 2 4 4 4 0 Ubiquitin-Binding Zinc Finger NOB1_Zn_bind PF08772.11 gi|284164757|ref|YP_003403036.1| - 2.1 8.5 9.0 2 8.7 0.3 2.9 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Lar_restr_allev PF14354.6 gi|284164757|ref|YP_003403036.1| - 2.2 8.7 13.5 1.1e+02 3.2 0.6 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ogr_Delta PF04606.12 gi|284164757|ref|YP_003403036.1| - 2.8 8.0 12.5 21 5.2 0.9 4.3 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger DUF1272 PF06906.11 gi|284164757|ref|YP_003403036.1| - 2.9 8.1 15.6 26 5.0 2.0 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1272) zinc_ribbon_4 PF13717.6 gi|284164757|ref|YP_003403036.1| - 3.1 7.8 10.9 36 4.4 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|284164757|ref|YP_003403036.1| - 4.1 7.5 18.9 6 7.0 0.1 4.5 5 0 0 5 5 4 0 NAD-dependent DNA ligase C4 zinc finger domain SurE PF01975.17 gi|284164758|ref|YP_003403037.1| - 1.5e-51 175.0 0.0 1.8e-51 174.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF2103 PF09876.9 gi|284164759|ref|YP_003403038.1| - 2.4e-40 136.5 0.2 3.6e-40 135.9 0.2 1.3 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) acVLRF1 PF18859.1 gi|284164759|ref|YP_003403038.1| - 0.0066 16.7 0.7 0.0066 16.7 0.7 2.0 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor Ribosomal_L37ae PF01780.19 gi|284164761|ref|YP_003403040.1| - 4.3e-23 81.2 0.2 5.2e-23 80.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.13 gi|284164762|ref|YP_003403041.1| - 1.9e-10 40.2 6.8 2.3e-10 39.9 6.8 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|284164762|ref|YP_003403041.1| - 5.9e-05 22.3 0.2 0.0044 16.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|284164762|ref|YP_003403041.1| - 0.00072 19.6 0.5 0.00074 19.5 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|284164762|ref|YP_003403041.1| - 0.00094 18.7 1.7 0.21 11.2 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|284164762|ref|YP_003403041.1| - 0.0036 17.3 4.6 0.077 13.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.9 gi|284164762|ref|YP_003403041.1| - 0.0037 17.3 0.5 0.0065 16.5 0.5 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.6 gi|284164762|ref|YP_003403041.1| - 0.0057 16.3 2.2 0.17 11.6 0.3 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|284164762|ref|YP_003403041.1| - 0.0067 16.4 1.1 0.014 15.4 1.1 1.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|284164762|ref|YP_003403041.1| - 0.0078 15.9 1.0 0.7 9.7 2.3 2.1 1 1 1 2 2 2 2 A2L zinc ribbon domain YacG PF03884.14 gi|284164762|ref|YP_003403041.1| - 0.012 15.3 0.2 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG RNHCP PF12647.7 gi|284164762|ref|YP_003403041.1| - 0.014 15.4 0.3 0.015 15.3 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|284164762|ref|YP_003403041.1| - 0.017 14.7 2.2 0.84 9.2 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|284164762|ref|YP_003403041.1| - 0.023 14.6 0.2 0.092 12.7 0.0 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|284164762|ref|YP_003403041.1| - 0.03 14.7 0.7 0.081 13.3 0.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|284164762|ref|YP_003403041.1| - 0.036 14.0 0.8 0.056 13.4 0.8 1.3 1 1 0 1 1 1 0 zinc-ribbons Anti-TRAP PF15777.5 gi|284164762|ref|YP_003403041.1| - 0.043 13.8 0.1 0.049 13.6 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF951 PF06107.11 gi|284164762|ref|YP_003403041.1| - 0.051 13.5 0.5 3 7.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.12 gi|284164762|ref|YP_003403041.1| - 0.059 13.7 0.1 0.48 10.8 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_13 PF09855.9 gi|284164762|ref|YP_003403041.1| - 0.06 13.5 0.7 0.15 12.2 0.1 1.8 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF3268 PF11672.8 gi|284164762|ref|YP_003403041.1| - 0.092 13.1 1.1 0.39 11.1 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain OrfB_Zn_ribbon PF07282.11 gi|284164762|ref|YP_003403041.1| - 0.12 12.4 3.3 0.19 11.7 2.9 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|284164762|ref|YP_003403041.1| - 0.12 11.9 3.4 0.81 9.3 3.9 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding CpXC PF14353.6 gi|284164762|ref|YP_003403041.1| - 0.17 12.0 1.2 0.43 10.6 0.2 1.8 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|284164762|ref|YP_003403041.1| - 0.22 11.7 4.2 0.52 10.5 4.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|284164762|ref|YP_003403041.1| - 0.4 10.6 5.7 17 5.4 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|284164762|ref|YP_003403041.1| - 0.58 10.3 1.8 0.68 10.1 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin Pcc1 PF09341.10 gi|284164763|ref|YP_003403042.1| - 1.5e-11 44.3 0.3 1.6e-11 44.1 0.3 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF2243 PF10002.9 gi|284164764|ref|YP_003403043.1| - 3.8e-39 134.0 10.9 4.4e-39 133.8 10.9 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) TMEM174 PF15029.6 gi|284164764|ref|YP_003403043.1| - 0.077 12.7 0.4 0.1 12.3 0.4 1.1 1 0 0 1 1 1 0 Transmembrane protein 174 Peptidase_A8 PF01252.18 gi|284164764|ref|YP_003403043.1| - 0.21 11.8 5.6 0.13 12.5 3.6 1.7 1 1 1 2 2 2 0 Signal peptidase (SPase) II YtpI PF14007.6 gi|284164764|ref|YP_003403043.1| - 1.3 9.2 4.0 14 5.9 0.5 2.7 3 0 0 3 3 3 0 YtpI-like protein Iron_transport PF10634.9 gi|284164765|ref|YP_003403044.1| - 4.1e-07 30.3 0.0 8.6e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Fe2+ transport protein Prefoldin_2 PF01920.20 gi|284164766|ref|YP_003403045.1| - 3.2e-25 88.1 20.8 3.6e-25 88.0 20.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit FlaC_arch PF05377.11 gi|284164766|ref|YP_003403045.1| - 0.00028 21.2 5.4 0.00028 21.2 5.4 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) Prefoldin PF02996.17 gi|284164766|ref|YP_003403045.1| - 0.00039 20.3 6.5 0.00039 20.3 6.5 2.6 1 1 1 2 2 2 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.6 gi|284164766|ref|YP_003403045.1| - 0.0011 18.3 7.9 0.0013 18.1 7.9 1.0 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV CLZ PF16526.5 gi|284164766|ref|YP_003403045.1| - 0.0026 18.1 4.9 0.0026 18.1 4.9 2.5 2 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3584 PF12128.8 gi|284164766|ref|YP_003403045.1| - 0.0051 14.4 9.0 0.0063 14.1 9.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Laminin_II PF06009.12 gi|284164766|ref|YP_003403045.1| - 0.0097 15.9 8.8 0.015 15.3 8.8 1.3 1 1 0 1 1 1 1 Laminin Domain II DUF5344 PF17279.2 gi|284164766|ref|YP_003403045.1| - 0.012 16.2 11.6 0.055 14.1 3.0 2.7 1 1 2 3 3 3 0 Family of unknown function (DUF5344) DHR10 PF18595.1 gi|284164766|ref|YP_003403045.1| - 0.014 15.4 4.7 0.014 15.4 4.7 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain XhlA PF10779.9 gi|284164766|ref|YP_003403045.1| - 0.022 15.0 2.6 0.022 15.0 2.6 2.3 2 0 0 2 2 2 0 Haemolysin XhlA DUF5082 PF16888.5 gi|284164766|ref|YP_003403045.1| - 0.028 14.7 10.2 0.04 14.2 10.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) FapA PF03961.13 gi|284164766|ref|YP_003403045.1| - 0.033 12.8 3.6 0.046 12.3 3.6 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF2379 PF09543.10 gi|284164766|ref|YP_003403045.1| - 0.05 13.8 1.9 0.05 13.8 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Spc7 PF08317.11 gi|284164766|ref|YP_003403045.1| - 0.14 11.0 17.1 0.36 9.7 4.8 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein BRI3BP PF14965.6 gi|284164766|ref|YP_003403045.1| - 0.16 11.5 0.4 0.28 10.7 0.4 1.4 1 0 0 1 1 1 0 Negative regulator of p53/TP53 DUF724 PF05266.14 gi|284164766|ref|YP_003403045.1| - 0.2 11.4 12.4 0.25 11.1 12.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) BLOC1_2 PF10046.9 gi|284164766|ref|YP_003403045.1| - 0.21 11.9 10.0 2.4 8.5 1.4 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FUSC PF04632.12 gi|284164766|ref|YP_003403045.1| - 0.28 9.7 3.0 0.35 9.4 3.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family HemX PF04375.14 gi|284164766|ref|YP_003403045.1| - 0.34 10.2 17.4 15 4.7 17.4 2.0 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase WXG100 PF06013.12 gi|284164766|ref|YP_003403045.1| - 0.4 10.9 8.6 2.9 8.2 2.7 2.6 2 1 1 3 3 3 0 Proteins of 100 residues with WXG NPV_P10 PF05531.12 gi|284164766|ref|YP_003403045.1| - 0.43 11.1 7.5 1.1 9.8 0.6 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BRE1 PF08647.11 gi|284164766|ref|YP_003403045.1| - 0.47 10.6 16.2 2.2 8.4 5.0 2.2 1 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase Prominin PF05478.11 gi|284164766|ref|YP_003403045.1| - 0.57 8.1 3.5 0.73 7.7 3.5 1.2 1 0 0 1 1 1 0 Prominin DUF1826 PF08856.11 gi|284164766|ref|YP_003403045.1| - 0.62 10.0 2.9 0.84 9.5 2.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1826) DUF4140 PF13600.6 gi|284164766|ref|YP_003403045.1| - 0.65 10.5 15.8 0.087 13.3 3.6 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Exonuc_VII_L PF02601.15 gi|284164766|ref|YP_003403045.1| - 0.72 9.4 4.7 0.97 8.9 4.7 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Spc24 PF08286.11 gi|284164766|ref|YP_003403045.1| - 0.87 9.9 18.6 0.62 10.3 5.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 ParE_toxin PF05016.15 gi|284164766|ref|YP_003403045.1| - 0.95 10.1 3.5 20 5.9 0.3 2.1 2 0 0 2 2 2 0 ParE toxin of type II toxin-antitoxin system, parDE DUF1664 PF07889.12 gi|284164766|ref|YP_003403045.1| - 0.99 9.5 10.0 1.4 8.9 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|284164766|ref|YP_003403045.1| - 1.3 9.1 25.0 14 5.8 25.0 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Sec34 PF04136.15 gi|284164766|ref|YP_003403045.1| - 1.4 8.8 11.6 0.39 10.6 2.0 2.1 1 1 1 2 2 2 0 Sec34-like family Syntaxin-6_N PF09177.11 gi|284164766|ref|YP_003403045.1| - 1.9 9.1 13.7 6.2 7.4 9.6 2.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Fib_alpha PF08702.10 gi|284164766|ref|YP_003403045.1| - 2.3 8.4 9.9 34 4.6 10.0 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family HlyD_2 PF12700.7 gi|284164766|ref|YP_003403045.1| - 3 6.5 7.2 0.32 9.7 2.4 1.6 1 1 1 2 2 2 0 HlyD family secretion protein OEP PF02321.18 gi|284164766|ref|YP_003403045.1| - 3.3 7.5 12.7 0.44 10.3 0.3 2.1 2 0 0 2 2 2 0 Outer membrane efflux protein Dcc1 PF09724.9 gi|284164766|ref|YP_003403045.1| - 4.2 6.6 9.2 5.2 6.3 9.2 1.1 1 0 0 1 1 1 0 Sister chromatid cohesion protein Dcc1 DUF948 PF06103.11 gi|284164766|ref|YP_003403045.1| - 4.4 7.6 6.9 18 5.7 0.2 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Med21 PF11221.8 gi|284164766|ref|YP_003403045.1| - 4.7 7.5 20.3 6.2 7.1 5.8 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex Cep57_CLD PF14073.6 gi|284164766|ref|YP_003403045.1| - 5.5 7.0 22.1 2.6 8.0 8.1 2.1 1 1 0 2 2 2 0 Centrosome localisation domain of Cep57 DUF3450 PF11932.8 gi|284164766|ref|YP_003403045.1| - 6.1 6.1 21.1 1.7 7.9 5.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) T3SSipB PF16535.5 gi|284164766|ref|YP_003403045.1| - 6.5 7.2 10.9 2.4e+02 2.1 11.4 2.1 1 1 0 1 1 1 0 Type III cell invasion protein SipB ADIP PF11559.8 gi|284164766|ref|YP_003403045.1| - 7.2 6.7 15.5 0.55 10.3 2.8 2.0 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DHquinase_I PF01487.15 gi|284164766|ref|YP_003403045.1| - 9.3 6.4 7.8 1.2 9.3 3.5 1.6 2 0 0 2 2 2 0 Type I 3-dehydroquinase Fzo_mitofusin PF04799.13 gi|284164766|ref|YP_003403045.1| - 9.5 5.7 12.3 6.6 6.3 2.8 2.1 1 1 1 2 2 2 0 fzo-like conserved region TraF_2 PF13729.6 gi|284164766|ref|YP_003403045.1| - 9.8 5.4 10.5 1.1 8.6 1.4 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF3194 PF11419.8 gi|284164767|ref|YP_003403046.1| - 0.00027 21.2 0.2 0.00032 21.0 0.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3194) NmrA PF05368.13 gi|284164768|ref|YP_003403047.1| - 7.9e-51 172.9 0.0 1e-50 172.5 0.0 1.0 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|284164768|ref|YP_003403047.1| - 1.5e-18 67.4 0.2 2.3e-18 66.7 0.2 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|284164768|ref|YP_003403047.1| - 1.3e-08 34.7 0.5 3.3e-08 33.3 0.1 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284164768|ref|YP_003403047.1| - 7e-05 22.4 0.0 0.00011 21.7 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284164768|ref|YP_003403047.1| - 0.00026 20.1 0.1 0.00038 19.6 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|284164768|ref|YP_003403047.1| - 0.0017 18.6 0.1 0.0031 17.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|284164768|ref|YP_003403047.1| - 0.0079 16.1 0.1 0.024 14.6 0.1 1.8 1 1 1 2 2 2 1 KR domain Polysacc_synt_2 PF02719.15 gi|284164768|ref|YP_003403047.1| - 0.024 13.8 0.3 0.093 11.8 0.3 1.8 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|284164768|ref|YP_003403047.1| - 0.035 13.6 0.3 0.066 12.7 0.1 1.6 2 0 0 2 2 2 0 short chain dehydrogenase Adhesin_P1 PF03257.13 gi|284164768|ref|YP_003403047.1| - 0.099 13.2 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 Mycoplasma adhesin P1 NAD_binding_4 PF07993.12 gi|284164768|ref|YP_003403047.1| - 0.17 11.1 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Male sterility protein GATase PF00117.28 gi|284164769|ref|YP_003403048.1| - 4.6e-35 121.1 0.0 5.3e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284164769|ref|YP_003403048.1| - 3.5e-14 53.1 1.3 2e-12 47.3 0.1 2.9 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|284164769|ref|YP_003403048.1| - 0.047 13.3 0.2 0.11 12.0 0.2 1.7 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AAA PF00004.29 gi|284164772|ref|YP_003403051.1| - 2.5e-45 154.1 1.6 3.5e-45 153.7 0.1 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284164772|ref|YP_003403051.1| - 5.2e-12 45.4 1.1 1.7e-11 43.7 1.1 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|284164772|ref|YP_003403051.1| - 5.5e-09 36.4 0.0 2e-08 34.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|284164772|ref|YP_003403051.1| - 1.7e-07 31.2 0.0 4.7e-07 29.7 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|284164772|ref|YP_003403051.1| - 3.5e-06 27.1 2.4 1.3e-05 25.2 0.5 2.7 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|284164772|ref|YP_003403051.1| - 1e-05 25.9 3.2 0.011 16.2 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|284164772|ref|YP_003403051.1| - 1.2e-05 25.6 0.4 0.002 18.4 0.0 2.8 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284164772|ref|YP_003403051.1| - 3.7e-05 24.2 7.8 6.4e-05 23.4 1.1 3.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|284164772|ref|YP_003403051.1| - 3.7e-05 24.3 0.4 0.001 19.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|284164772|ref|YP_003403051.1| - 9.3e-05 22.3 0.7 0.00021 21.2 0.2 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|284164772|ref|YP_003403051.1| - 0.00015 21.0 0.0 0.00034 19.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) GrpE PF01025.19 gi|284164772|ref|YP_003403051.1| - 0.00024 20.8 9.4 0.00024 20.8 9.4 2.1 2 0 0 2 2 2 1 GrpE Mg_chelatase PF01078.21 gi|284164772|ref|YP_003403051.1| - 0.0015 18.0 0.2 0.0042 16.5 0.1 1.8 2 0 0 2 2 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|284164772|ref|YP_003403051.1| - 0.0015 17.8 1.9 0.002 17.4 0.0 2.0 2 1 0 2 2 2 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|284164772|ref|YP_003403051.1| - 0.0023 18.0 0.2 0.0087 16.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|284164772|ref|YP_003403051.1| - 0.0024 17.6 2.3 0.0036 17.1 0.0 2.4 3 0 0 3 3 2 1 AAA domain Sigma54_activat PF00158.26 gi|284164772|ref|YP_003403051.1| - 0.0031 17.2 0.2 0.053 13.2 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|284164772|ref|YP_003403051.1| - 0.0037 17.0 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|284164772|ref|YP_003403051.1| - 0.0041 17.5 0.0 0.011 16.1 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_33 PF13671.6 gi|284164772|ref|YP_003403051.1| - 0.0052 17.0 0.1 0.03 14.5 0.0 2.1 1 1 0 2 2 1 1 AAA domain Atg14 PF10186.9 gi|284164772|ref|YP_003403051.1| - 0.0085 15.2 0.8 0.012 14.7 0.8 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 NACHT PF05729.12 gi|284164772|ref|YP_003403051.1| - 0.0099 15.8 0.1 0.09 12.7 0.0 2.3 1 1 1 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|284164772|ref|YP_003403051.1| - 0.013 15.8 2.4 0.013 15.8 0.1 2.4 2 1 0 2 2 1 0 AAA domain AAA_3 PF07726.11 gi|284164772|ref|YP_003403051.1| - 0.02 14.7 0.7 0.11 12.4 0.0 2.5 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|284164772|ref|YP_003403051.1| - 0.023 14.7 0.0 0.052 13.5 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|284164772|ref|YP_003403051.1| - 0.024 14.2 6.5 0.2 11.2 0.1 3.3 2 1 0 3 3 3 0 AAA domain TniB PF05621.11 gi|284164772|ref|YP_003403051.1| - 0.028 13.8 0.0 1.5 8.2 0.0 2.7 1 1 1 2 2 2 0 Bacterial TniB protein Fmp27_WPPW PF10359.9 gi|284164772|ref|YP_003403051.1| - 0.032 13.1 6.7 0.05 12.5 6.7 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain HalX PF08663.10 gi|284164772|ref|YP_003403051.1| - 0.034 14.5 8.7 0.54 10.6 5.1 3.8 3 0 0 3 3 3 0 HalX domain DUF2334 PF10096.9 gi|284164772|ref|YP_003403051.1| - 0.034 13.8 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) AAA_7 PF12775.7 gi|284164772|ref|YP_003403051.1| - 0.035 13.6 1.2 0.054 13.0 0.1 1.9 2 1 0 2 2 1 0 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|284164772|ref|YP_003403051.1| - 0.041 13.0 0.0 0.087 11.9 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 YabA PF06156.13 gi|284164772|ref|YP_003403051.1| - 0.062 13.9 4.9 5.4 7.7 5.4 2.8 2 0 0 2 2 2 0 Initiation control protein YabA bZIP_1 PF00170.21 gi|284164772|ref|YP_003403051.1| - 0.076 13.1 13.7 0.19 11.8 2.9 2.9 1 1 1 2 2 2 0 bZIP transcription factor GAS PF13851.6 gi|284164772|ref|YP_003403051.1| - 0.079 12.3 11.9 0.028 13.8 9.1 1.7 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding NTPase_1 PF03266.15 gi|284164772|ref|YP_003403051.1| - 0.095 12.6 4.0 0.57 10.1 0.1 3.3 3 1 0 3 3 3 0 NTPase Sigma54_activ_2 PF14532.6 gi|284164772|ref|YP_003403051.1| - 0.1 12.7 0.1 0.62 10.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain ADIP PF11559.8 gi|284164772|ref|YP_003403051.1| - 0.11 12.6 8.6 0.28 11.3 8.6 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding ATPase PF06745.13 gi|284164772|ref|YP_003403051.1| - 0.16 11.3 10.6 0.35 10.2 0.0 3.8 3 1 1 4 4 4 0 KaiC ATPase_2 PF01637.18 gi|284164772|ref|YP_003403051.1| - 0.2 11.5 3.6 0.52 10.2 0.1 2.9 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea CLZ PF16526.5 gi|284164772|ref|YP_003403051.1| - 0.22 11.9 6.6 1.2 9.5 6.6 2.4 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Fungal_TACC PF12709.7 gi|284164772|ref|YP_003403051.1| - 0.23 11.9 7.2 0.11 13.0 4.5 1.9 2 0 0 2 2 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins ABC_tran PF00005.27 gi|284164772|ref|YP_003403051.1| - 0.4 11.2 0.0 0.4 11.2 0.0 2.7 2 1 0 2 2 1 0 ABC transporter Occludin_ELL PF07303.13 gi|284164772|ref|YP_003403051.1| - 1 10.1 5.6 2 9.2 2.7 2.6 3 0 0 3 3 2 0 Occludin homology domain Cep57_CLD_2 PF14197.6 gi|284164772|ref|YP_003403051.1| - 1.3 9.1 13.5 1.6 8.9 11.9 1.9 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 AAA_11 PF13086.6 gi|284164772|ref|YP_003403051.1| - 2.1 8.0 10.0 0.45 10.3 0.1 2.4 1 1 1 2 2 2 0 AAA domain FlaC_arch PF05377.11 gi|284164772|ref|YP_003403051.1| - 3.3 8.2 8.8 39 4.7 0.2 3.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Swi5 PF07061.11 gi|284164772|ref|YP_003403051.1| - 5.9 7.1 8.8 38 4.5 8.8 2.5 1 1 0 1 1 1 0 Swi5 SlyX PF04102.12 gi|284164772|ref|YP_003403051.1| - 7.7 7.2 11.7 13 6.5 8.8 2.9 2 1 0 2 2 1 0 SlyX HTH_24 PF13412.6 gi|284164773|ref|YP_003403052.1| - 1.3e-07 31.1 0.0 1.8e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284164773|ref|YP_003403052.1| - 0.00016 21.4 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284164773|ref|YP_003403052.1| - 0.00034 20.2 0.0 0.00053 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|284164773|ref|YP_003403052.1| - 0.0024 17.8 0.1 0.0027 17.6 0.1 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284164773|ref|YP_003403052.1| - 0.0031 17.4 0.0 0.0045 16.9 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|284164773|ref|YP_003403052.1| - 0.0038 17.0 0.0 0.0045 16.8 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 gi|284164773|ref|YP_003403052.1| - 0.012 15.2 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Replic_Relax PF13814.6 gi|284164773|ref|YP_003403052.1| - 0.037 14.1 0.1 0.05 13.7 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_23 PF13384.6 gi|284164773|ref|YP_003403052.1| - 0.046 13.5 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 gi|284164773|ref|YP_003403052.1| - 0.048 13.7 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|284164773|ref|YP_003403052.1| - 0.061 13.5 0.0 0.098 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|284164773|ref|YP_003403052.1| - 0.067 13.1 0.1 0.096 12.7 0.1 1.2 1 0 0 1 1 1 0 HTH domain RNA_pol_Rpc34 PF05158.12 gi|284164773|ref|YP_003403052.1| - 0.07 12.5 0.0 0.078 12.4 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit RepL PF05732.11 gi|284164773|ref|YP_003403052.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.10 gi|284164773|ref|YP_003403052.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|284164773|ref|YP_003403052.1| - 0.17 12.3 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Metallophos PF00149.28 gi|284164774|ref|YP_003403053.1| - 7.9e-12 46.1 0.7 1.3e-11 45.4 0.7 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|284164774|ref|YP_003403053.1| - 1.4e-11 44.9 0.3 3.2e-11 43.7 0.3 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_15 PF13175.6 gi|284164775|ref|YP_003403054.1| - 2.7e-14 53.7 0.0 1.7e-10 41.2 0.0 3.5 1 1 0 2 2 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|284164775|ref|YP_003403054.1| - 1.9e-13 50.0 58.4 0.00015 20.6 0.0 5.2 2 1 3 5 5 5 4 AAA domain AAA_23 PF13476.6 gi|284164775|ref|YP_003403054.1| - 5.3e-12 46.7 38.7 5.3e-12 46.7 38.7 6.9 1 1 2 3 3 1 1 AAA domain Spc7 PF08317.11 gi|284164775|ref|YP_003403054.1| - 3.1e-09 36.2 105.1 0.001 18.0 0.1 6.4 2 2 4 6 6 6 5 Spc7 kinetochore protein AAA_21 PF13304.6 gi|284164775|ref|YP_003403054.1| - 2e-08 34.4 0.4 0.00017 21.5 1.9 4.1 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284164775|ref|YP_003403054.1| - 3e-07 30.1 61.1 3.7e-06 26.5 61.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284164775|ref|YP_003403054.1| - 8.9e-07 28.6 0.0 1.8e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|284164775|ref|YP_003403054.1| - 8.8e-06 24.8 0.3 0.0039 16.1 0.0 2.7 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|284164775|ref|YP_003403054.1| - 4.8e-05 23.0 0.0 4.8e-05 23.0 0.0 6.0 4 2 0 5 5 5 1 AAA domain DUF3584 PF12128.8 gi|284164775|ref|YP_003403054.1| - 5.7e-05 20.9 104.6 0.002 15.7 40.3 4.0 3 1 0 3 3 3 3 Protein of unknown function (DUF3584) CEP63 PF17045.5 gi|284164775|ref|YP_003403054.1| - 0.00036 20.5 36.8 0.00036 20.5 36.8 3.8 2 1 1 3 3 2 1 Centrosomal protein of 63 kDa Laminin_II PF06009.12 gi|284164775|ref|YP_003403054.1| - 0.0013 18.8 58.6 0.007 16.4 5.4 6.8 3 2 5 8 8 7 3 Laminin Domain II Jnk-SapK_ap_N PF09744.9 gi|284164775|ref|YP_003403054.1| - 0.0046 17.2 7.3 0.0046 17.2 7.3 7.1 2 2 4 7 7 6 2 JNK_SAPK-associated protein-1 SbcCD_C PF13558.6 gi|284164775|ref|YP_003403054.1| - 0.0072 16.5 0.4 0.043 14.1 0.0 2.4 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Baculo_PEP_C PF04513.12 gi|284164775|ref|YP_003403054.1| - 0.0076 16.3 14.0 0.13 12.3 0.2 5.0 3 2 2 6 6 6 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|284164775|ref|YP_003403054.1| - 0.011 15.7 47.6 0.049 13.7 1.6 6.9 2 2 6 8 8 8 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|284164775|ref|YP_003403054.1| - 0.016 15.7 25.9 0.43 11.1 0.3 8.1 5 4 5 10 10 9 0 Nucleopolyhedrovirus P10 protein Viral_helicase1 PF01443.18 gi|284164775|ref|YP_003403054.1| - 0.032 14.0 0.2 0.096 12.4 0.0 1.9 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase Mating_N PF12731.7 gi|284164775|ref|YP_003403054.1| - 0.036 14.2 2.7 0.15 12.2 0.1 3.0 2 0 0 2 2 2 0 Mating-type protein beta 1 NACHT PF05729.12 gi|284164775|ref|YP_003403054.1| - 0.056 13.4 0.0 0.18 11.7 0.0 1.9 1 0 0 1 1 1 0 NACHT domain Fib_alpha PF08702.10 gi|284164775|ref|YP_003403054.1| - 0.091 12.9 35.6 0.067 13.4 1.5 5.0 3 1 0 4 4 4 0 Fibrinogen alpha/beta chain family ABC_tran PF00005.27 gi|284164775|ref|YP_003403054.1| - 0.092 13.3 0.0 0.092 13.3 0.0 5.3 2 1 0 3 3 1 0 ABC transporter MukB PF04310.12 gi|284164775|ref|YP_003403054.1| - 0.11 12.3 0.0 0.11 12.3 0.0 2.9 3 0 0 3 3 3 0 MukB N-terminal DNA_ligase_ZBD PF03119.16 gi|284164775|ref|YP_003403054.1| - 0.13 12.3 0.3 0.76 9.9 0.3 2.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain AAA_33 PF13671.6 gi|284164775|ref|YP_003403054.1| - 0.15 12.3 0.0 0.15 12.3 0.0 4.6 5 0 0 5 5 2 0 AAA domain DUF724 PF05266.14 gi|284164775|ref|YP_003403054.1| - 0.18 11.6 72.2 0.11 12.3 6.7 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF724) Atg14 PF10186.9 gi|284164775|ref|YP_003403054.1| - 0.42 9.6 78.8 0.088 11.9 6.2 5.0 2 2 2 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|284164775|ref|YP_003403054.1| - 0.45 10.0 51.9 0.032 13.8 5.4 4.2 1 1 2 4 4 4 0 Exonuclease VII, large subunit TPR_MLP1_2 PF07926.12 gi|284164775|ref|YP_003403054.1| - 2 8.5 112.3 1.3 9.1 14.1 7.9 1 1 8 9 9 9 0 TPR/MLP1/MLP2-like protein DUF948 PF06103.11 gi|284164775|ref|YP_003403054.1| - 3.9 7.8 30.0 23 5.3 1.4 7.8 4 3 4 8 8 8 0 Bacterial protein of unknown function (DUF948) FapA PF03961.13 gi|284164775|ref|YP_003403054.1| - 4.1 5.9 61.4 0.59 8.7 3.3 5.2 1 1 2 5 5 5 0 Flagellar Assembly Protein A Sec34 PF04136.15 gi|284164775|ref|YP_003403054.1| - 8.9 6.2 38.1 0.26 11.2 2.2 6.3 4 3 3 7 7 7 0 Sec34-like family FliJ PF02050.16 gi|284164775|ref|YP_003403054.1| - 9.7 6.4 81.7 0.12 12.6 4.8 7.7 3 3 4 7 7 6 0 Flagellar FliJ protein DNA_pol_B PF00136.21 gi|284164779|ref|YP_003403058.1| - 2.8e-48 164.8 0.0 4.5e-48 164.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|284164779|ref|YP_003403058.1| - 4.1e-29 101.8 0.0 7.6e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.13 gi|284164779|ref|YP_003403058.1| - 0.0074 15.2 0.0 0.088 11.6 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral DUF3907 PF13047.6 gi|284164779|ref|YP_003403058.1| - 0.071 13.1 0.0 17 5.3 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3907) ABC_tran PF00005.27 gi|284164780|ref|YP_003403059.1| - 3.5e-16 60.0 0.0 1.2e-15 58.2 0.0 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|284164780|ref|YP_003403059.1| - 4.9e-06 26.1 0.4 0.027 13.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|284164780|ref|YP_003403059.1| - 0.00017 22.0 0.2 0.16 12.4 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|284164780|ref|YP_003403059.1| - 0.00031 20.6 0.6 0.26 11.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_5 PF07728.14 gi|284164780|ref|YP_003403059.1| - 0.0013 18.8 0.4 2.2 8.3 0.2 2.7 1 1 1 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|284164780|ref|YP_003403059.1| - 0.0037 17.0 0.0 0.007 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|284164780|ref|YP_003403059.1| - 0.038 14.2 0.2 1 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|284164780|ref|YP_003403059.1| - 0.049 14.2 0.1 0.17 12.4 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284164780|ref|YP_003403059.1| - 0.056 13.2 0.8 0.22 11.2 0.8 1.9 1 1 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.15 gi|284164780|ref|YP_003403059.1| - 0.068 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 gi|284164780|ref|YP_003403059.1| - 0.081 12.5 0.1 0.22 11.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|284164780|ref|YP_003403059.1| - 0.087 13.1 0.0 0.62 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|284164780|ref|YP_003403059.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284164780|ref|YP_003403059.1| - 0.13 12.7 6.8 0.32 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|284164780|ref|YP_003403059.1| - 0.18 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase UPF0051 PF01458.17 gi|284164781|ref|YP_003403060.1| - 1.2e-71 240.9 0.5 1.5e-71 240.5 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|284164782|ref|YP_003403061.1| - 1.6e-62 211.0 1.1 2.1e-62 210.7 1.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) LUC7 PF03194.15 gi|284164783|ref|YP_003403062.1| - 0.077 12.6 0.1 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 LUC7 N_terminus CCDC53 PF10152.9 gi|284164783|ref|YP_003403062.1| - 0.88 10.0 2.8 1.5 9.2 2.8 1.3 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex YkyA PF10368.9 gi|284164784|ref|YP_003403063.1| - 0.004 16.9 7.1 0.0078 15.9 6.2 1.9 1 1 1 2 2 2 1 Putative cell-wall binding lipoprotein Rubrerythrin PF02915.17 gi|284164784|ref|YP_003403063.1| - 0.017 15.5 3.2 0.017 15.5 3.2 2.8 1 1 0 2 2 2 0 Rubrerythrin DUF892 PF05974.12 gi|284164784|ref|YP_003403063.1| - 0.024 14.6 4.9 0.4 10.7 4.9 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF892) DUF4226 PF10774.9 gi|284164784|ref|YP_003403063.1| - 0.026 14.8 1.2 0.25 11.6 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) HrpJ PF07201.11 gi|284164784|ref|YP_003403063.1| - 0.049 13.9 1.7 0.052 13.9 0.9 1.5 1 1 0 1 1 1 0 HrpJ-like domain Ferritin_2 PF13668.6 gi|284164784|ref|YP_003403063.1| - 0.076 13.2 3.8 0.24 11.6 0.1 2.0 1 1 1 2 2 2 0 Ferritin-like domain Utp21 PF04192.12 gi|284164784|ref|YP_003403063.1| - 0.084 12.4 0.5 0.21 11.1 0.1 1.7 2 0 0 2 2 2 0 Utp21 specific WD40 associated putative domain hnRNP_Q_AcD PF18360.1 gi|284164784|ref|YP_003403063.1| - 0.09 12.8 0.8 0.45 10.5 0.1 2.5 3 1 0 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Peptidase_M41 PF01434.18 gi|284164784|ref|YP_003403063.1| - 0.093 12.6 0.8 0.15 11.9 0.8 1.3 1 0 0 1 1 1 0 Peptidase family M41 Cdh1_DBD_1 PF18196.1 gi|284164784|ref|YP_003403063.1| - 0.32 11.3 4.8 0.71 10.2 0.7 2.1 1 1 1 2 2 2 0 Chromodomain helicase DNA-binding domain 1 FUSC PF04632.12 gi|284164784|ref|YP_003403063.1| - 0.36 9.3 1.5 0.36 9.3 1.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family COQ7 PF03232.13 gi|284164784|ref|YP_003403063.1| - 9.6 5.9 9.1 3.8 7.3 1.4 2.1 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Fe_dep_repress PF01325.19 gi|284164785|ref|YP_003403064.1| - 1.4e-18 66.9 0.0 3.1e-18 65.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|284164785|ref|YP_003403064.1| - 3.6e-11 43.0 0.2 9.1e-11 41.7 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|284164785|ref|YP_003403064.1| - 2.8e-05 24.0 0.0 4.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|284164785|ref|YP_003403064.1| - 3.1e-05 23.8 0.0 7.1e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284164785|ref|YP_003403064.1| - 4e-05 23.5 0.0 7.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284164785|ref|YP_003403064.1| - 0.00015 21.6 0.0 0.00025 20.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|284164785|ref|YP_003403064.1| - 0.00017 21.1 0.0 0.00029 20.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284164785|ref|YP_003403064.1| - 0.00093 19.2 0.0 0.002 18.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|284164785|ref|YP_003403064.1| - 0.0028 18.0 0.0 0.0044 17.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.6 gi|284164785|ref|YP_003403064.1| - 0.0094 16.4 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|284164785|ref|YP_003403064.1| - 0.02 14.5 0.0 0.054 13.2 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|284164785|ref|YP_003403064.1| - 0.024 14.5 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FeoC PF09012.10 gi|284164785|ref|YP_003403064.1| - 0.026 14.6 0.0 0.059 13.5 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_11 PF08279.12 gi|284164785|ref|YP_003403064.1| - 0.035 14.1 0.0 0.062 13.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_12 PF08461.10 gi|284164785|ref|YP_003403064.1| - 0.041 13.8 0.3 0.087 12.8 0.0 1.8 2 1 0 2 2 1 0 Ribonuclease R winged-helix domain Penicillinase_R PF03965.16 gi|284164785|ref|YP_003403064.1| - 0.095 13.1 0.0 0.34 11.3 0.0 1.8 1 1 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|284164785|ref|YP_003403064.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|284164785|ref|YP_003403064.1| - 0.17 11.5 0.0 0.25 11.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) PLDc_2 PF13091.6 gi|284164786|ref|YP_003403065.1| - 2.7e-42 143.8 0.0 4.6e-25 88.0 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|284164786|ref|YP_003403065.1| - 1.6e-08 34.3 1.2 1e-06 28.7 0.2 2.8 3 0 0 3 3 3 1 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|284164786|ref|YP_003403065.1| - 0.0016 17.7 1.0 1.2 8.3 0.2 2.7 2 2 0 2 2 2 2 Archaeal transcriptional regulator TrmB HEAT_2 PF13646.6 gi|284164787|ref|YP_003403066.1| - 6.3e-21 74.6 13.6 4.5e-14 52.6 6.6 4.4 2 1 2 4 4 4 2 HEAT repeats HEAT_PBS PF03130.16 gi|284164787|ref|YP_003403066.1| - 1.3e-13 50.2 19.7 1.1e-05 25.6 0.7 6.5 7 0 0 7 7 7 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|284164787|ref|YP_003403066.1| - 4e-07 29.7 0.5 0.031 14.5 0.1 3.3 3 0 0 3 3 3 2 HEAT repeat HEAT_EZ PF13513.6 gi|284164787|ref|YP_003403066.1| - 6e-06 26.6 6.1 0.025 15.1 0.1 3.7 2 1 0 2 2 2 2 HEAT-like repeat Arm PF00514.23 gi|284164787|ref|YP_003403066.1| - 0.00023 21.1 0.3 0.93 9.6 0.0 3.5 1 1 2 3 3 3 1 Armadillo/beta-catenin-like repeat PilJ PF13675.6 gi|284164787|ref|YP_003403066.1| - 0.36 10.9 3.4 18 5.4 0.1 3.7 2 1 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term NPV_P10 PF05531.12 gi|284164787|ref|YP_003403066.1| - 0.74 10.3 4.8 5.2 7.6 0.1 3.6 3 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.11 gi|284164787|ref|YP_003403066.1| - 1.2 9.6 6.1 20 5.6 1.6 3.1 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) HMMR_N PF15905.5 gi|284164787|ref|YP_003403066.1| - 3.7 6.9 6.5 6.2 6.2 6.5 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal CDP-OH_P_transf PF01066.21 gi|284164788|ref|YP_003403067.1| - 5.9e-10 39.8 4.7 5.9e-10 39.8 4.7 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Copper-bind PF00127.20 gi|284164789|ref|YP_003403068.1| - 1.6e-12 47.7 0.1 3.6e-12 46.6 0.1 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|284164789|ref|YP_003403068.1| - 5.4e-05 23.2 0.1 0.0021 18.2 0.1 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain PEPCK_ATP PF01293.20 gi|284164790|ref|YP_003403069.1| - 5e-58 196.9 0.0 8.1e-58 196.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase PEPCK_GTP PF00821.18 gi|284164790|ref|YP_003403069.1| - 0.0094 14.8 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Tox-GHH PF15636.6 gi|284164790|ref|YP_003403069.1| - 0.17 11.9 0.0 0.45 10.5 0.0 1.7 1 0 0 1 1 1 0 GHH signature containing HNH/Endo VII superfamily nuclease toxin LDB19 PF13002.7 gi|284164792|ref|YP_003403071.1| - 0.16 11.7 0.0 0.16 11.7 0.0 1.0 1 0 0 1 1 1 0 Arrestin_N terminal like CutA1 PF03091.15 gi|284164793|ref|YP_003403072.1| - 1.8e-29 101.5 0.0 2e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein YebG PF07130.12 gi|284164793|ref|YP_003403072.1| - 0.042 13.7 0.2 0.075 12.9 0.1 1.6 2 0 0 2 2 2 0 YebG protein Ribosomal_L11 PF00298.19 gi|284164794|ref|YP_003403073.1| - 3.7e-20 72.2 0.0 6e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|284164794|ref|YP_003403073.1| - 9.3e-18 63.8 0.1 1.5e-17 63.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Lactamase_B_3 PF13483.6 gi|284164795|ref|YP_003403074.1| - 1.3e-11 44.7 0.1 2.6e-11 43.7 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284164795|ref|YP_003403074.1| - 1.7e-05 24.5 0.1 2.8e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284164795|ref|YP_003403074.1| - 0.017 15.1 0.4 0.077 13.0 0.2 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily ORF6C PF10552.9 gi|284164795|ref|YP_003403074.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 ORF6C domain Ribosomal_L1 PF00687.21 gi|284164797|ref|YP_003403076.1| - 9.6e-42 143.0 0.0 1.2e-41 142.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|284164798|ref|YP_003403077.1| - 1.3e-24 86.2 0.0 2.2e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|284164798|ref|YP_003403077.1| - 1.5e-14 53.7 0.0 3e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P RNA_pol_3_Rpc31 PF11705.8 gi|284164798|ref|YP_003403077.1| - 0.17 12.1 12.4 0.36 11.0 12.4 1.5 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Cwf_Cwc_15 PF04889.12 gi|284164798|ref|YP_003403077.1| - 1.4 8.6 8.7 2.4 7.8 8.7 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Ribosomal_60s PF00428.19 gi|284164799|ref|YP_003403078.1| - 2.2e-16 60.2 13.5 2.9e-16 59.8 13.5 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|284164799|ref|YP_003403078.1| - 0.013 14.1 2.2 0.015 13.9 2.2 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 NOA36 PF06524.12 gi|284164799|ref|YP_003403078.1| - 3.9 6.7 7.6 4.5 6.5 7.6 1.1 1 0 0 1 1 1 0 NOA36 protein TctA PF01970.16 gi|284164800|ref|YP_003403079.1| - 4e-63 213.5 42.6 4.8e-63 213.3 42.6 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family BtpA PF03437.15 gi|284164801|ref|YP_003403080.1| - 1.1e-84 283.9 2.2 1.2e-84 283.7 2.2 1.0 1 0 0 1 1 1 1 BtpA family PcrB PF01884.17 gi|284164801|ref|YP_003403080.1| - 0.026 14.0 2.3 0.32 10.4 1.0 2.3 1 1 1 2 2 2 0 PcrB family FlpD PF02662.16 gi|284164801|ref|YP_003403080.1| - 0.053 13.5 0.8 5.9 6.9 0.1 2.6 1 1 1 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Metallophos_2 PF12850.7 gi|284164801|ref|YP_003403080.1| - 0.06 13.5 0.1 0.16 12.2 0.1 1.7 2 0 0 2 2 2 0 Calcineurin-like phosphoesterase superfamily domain FMN_dh PF01070.18 gi|284164801|ref|YP_003403080.1| - 0.19 10.7 10.0 0.4 9.7 6.1 2.2 2 1 0 2 2 2 0 FMN-dependent dehydrogenase adh_short_C2 PF13561.6 gi|284164802|ref|YP_003403081.1| - 1.5e-47 162.1 4.6 1.8e-47 161.8 4.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284164802|ref|YP_003403081.1| - 5.7e-42 143.4 2.2 7.1e-42 143.1 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284164802|ref|YP_003403081.1| - 3.2e-12 46.7 1.2 4.2e-12 46.4 1.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284164802|ref|YP_003403081.1| - 1.4e-08 34.5 0.6 2.3e-08 33.8 0.6 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|284164802|ref|YP_003403081.1| - 0.00047 19.4 2.3 0.003 16.7 1.8 2.1 2 1 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|284164802|ref|YP_003403081.1| - 0.0012 18.0 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284164802|ref|YP_003403081.1| - 0.002 17.3 0.0 0.0027 16.9 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Glyco_transf_4 PF13439.6 gi|284164802|ref|YP_003403081.1| - 0.008 16.2 2.8 1.9 8.5 0.5 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 GDP_Man_Dehyd PF16363.5 gi|284164802|ref|YP_003403081.1| - 0.0091 15.4 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3HCDH_N PF02737.18 gi|284164802|ref|YP_003403081.1| - 0.01 15.8 0.6 0.023 14.6 0.6 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284164802|ref|YP_003403081.1| - 0.013 16.1 0.2 0.037 14.6 0.2 1.9 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|284164802|ref|YP_003403081.1| - 0.02 14.8 9.3 0.034 14.0 9.1 1.6 1 1 0 1 1 1 0 NAD(P)H-binding Glyco_transf_5 PF08323.11 gi|284164802|ref|YP_003403081.1| - 0.022 14.4 1.8 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Starch synthase catalytic domain Glyco_trans_4_4 PF13579.6 gi|284164802|ref|YP_003403081.1| - 0.058 13.8 9.6 0.41 11.1 2.2 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Sacchrp_dh_NADP PF03435.18 gi|284164802|ref|YP_003403081.1| - 0.098 12.9 0.5 0.2 11.9 0.5 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|284164802|ref|YP_003403081.1| - 0.4 10.2 2.4 0.7 9.4 2.4 1.3 1 0 0 1 1 1 0 NmrA-like family Aldedh PF00171.22 gi|284164803|ref|YP_003403082.1| - 6e-13 48.1 0.1 6e-12 44.8 0.1 2.3 1 1 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|284164803|ref|YP_003403082.1| - 0.0027 16.8 0.0 0.004 16.2 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) AMP-binding PF00501.28 gi|284164804|ref|YP_003403083.1| - 0.0077 14.9 0.0 2.7 6.5 0.0 2.1 2 0 0 2 2 2 2 AMP-binding enzyme SSF PF00474.17 gi|284164805|ref|YP_003403084.1| - 2.4e-39 135.4 23.7 3e-39 135.0 23.7 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family ENOD93 PF03386.14 gi|284164805|ref|YP_003403084.1| - 1.8 8.5 6.2 35 4.4 0.0 4.0 4 0 0 4 4 4 0 Early nodulin 93 ENOD93 protein SdpI PF13630.6 gi|284164806|ref|YP_003403085.1| - 0.81 9.9 4.6 1.1 9.4 4.6 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family Oxidored_FMN PF00724.20 gi|284164807|ref|YP_003403086.1| - 5.5e-69 233.0 0.0 7.3e-69 232.6 0.0 1.2 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|284164807|ref|YP_003403086.1| - 0.0065 15.6 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) TAT_signal PF10518.9 gi|284164808|ref|YP_003403087.1| - 3.8e-06 26.5 1.9 5e-06 26.1 1.9 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|284164808|ref|YP_003403087.1| - 0.003 18.0 0.0 0.007 16.8 0.0 1.6 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family MS_channel PF00924.18 gi|284164809|ref|YP_003403088.1| - 3.9e-47 160.5 1.9 6.2e-47 159.8 1.9 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3172 PF11371.8 gi|284164809|ref|YP_003403088.1| - 0.096 12.4 0.1 0.57 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3172) AhpC-TSA PF00578.21 gi|284164810|ref|YP_003403089.1| - 3.6e-15 56.0 0.0 4.7e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284164810|ref|YP_003403089.1| - 3.3e-12 46.4 0.0 4.4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin TatD_DNase PF01026.21 gi|284164810|ref|YP_003403089.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 TatD related DNase Thioredoxin_2 PF13098.6 gi|284164810|ref|YP_003403089.1| - 0.019 15.4 0.1 0.039 14.4 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain TraF PF13728.6 gi|284164810|ref|YP_003403089.1| - 0.02 14.7 0.0 0.028 14.2 0.0 1.4 1 1 0 1 1 1 0 F plasmid transfer operon protein Mur_ligase_C PF02875.21 gi|284164810|ref|YP_003403089.1| - 0.05 13.9 0.0 0.093 13.0 0.0 1.4 1 1 0 1 1 1 0 Mur ligase family, glutamate ligase domain T4_deiodinase PF00837.17 gi|284164810|ref|YP_003403089.1| - 0.1 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase Thioredoxin_8 PF13905.6 gi|284164810|ref|YP_003403089.1| - 0.11 12.9 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like AsnC_trans_reg PF01037.21 gi|284164812|ref|YP_003403091.1| - 1.1e-12 47.7 1.1 1.6e-12 47.2 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|284164812|ref|YP_003403091.1| - 1.9e-06 27.3 0.1 4.2e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284164812|ref|YP_003403091.1| - 7.7e-06 25.6 0.6 1.6e-05 24.6 0.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|284164812|ref|YP_003403091.1| - 6.7e-05 23.3 0.1 0.002 18.6 0.2 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_54 PF18607.1 gi|284164812|ref|YP_003403091.1| - 0.0068 16.4 0.1 0.13 12.3 0.0 2.2 2 0 0 2 2 2 1 ParA helix turn helix domain MarR_2 PF12802.7 gi|284164812|ref|YP_003403091.1| - 0.0093 15.8 0.1 0.018 14.9 0.1 1.5 1 0 0 1 1 1 1 MarR family She9_MDM33 PF05546.11 gi|284164812|ref|YP_003403091.1| - 0.04 13.7 0.4 0.21 11.3 0.1 2.2 1 1 1 2 2 2 0 She9 / Mdm33 family FeoC PF09012.10 gi|284164812|ref|YP_003403091.1| - 0.044 13.8 0.0 0.081 13.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Amidohydro_3 PF07969.11 gi|284164812|ref|YP_003403091.1| - 0.09 12.2 0.5 0.11 11.9 0.5 1.4 1 1 1 2 2 2 0 Amidohydrolase family DprA_WH PF17782.1 gi|284164812|ref|YP_003403091.1| - 0.094 12.8 0.3 0.19 11.9 0.3 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|284164812|ref|YP_003403091.1| - 0.11 12.5 0.1 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HemN_C PF06969.16 gi|284164812|ref|YP_003403091.1| - 0.23 11.6 1.3 6.3 7.0 0.2 2.3 2 0 0 2 2 2 0 HemN C-terminal domain Aminotran_1_2 PF00155.21 gi|284164813|ref|YP_003403092.1| - 2.2e-71 241.0 0.0 2.5e-71 240.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284164813|ref|YP_003403092.1| - 2.1e-05 24.0 0.0 5.2e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|284164813|ref|YP_003403092.1| - 0.00016 20.7 0.0 0.00032 19.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DUF2721 PF11026.8 gi|284164814|ref|YP_003403093.1| - 0.0047 16.8 1.4 0.011 15.7 0.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2721) DUF1467 PF07330.12 gi|284164814|ref|YP_003403093.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) Claudin_2 PF13903.6 gi|284164814|ref|YP_003403093.1| - 0.59 9.9 2.8 0.45 10.2 1.2 1.6 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Trp_oprn_chp PF09534.10 gi|284164814|ref|YP_003403093.1| - 1 9.1 8.1 2.4 7.9 8.1 1.7 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Phage_holin_3_6 PF07332.11 gi|284164814|ref|YP_003403093.1| - 2.2 8.3 8.5 4.3 7.4 8.5 1.5 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Acetyltransf_9 PF13527.7 gi|284164815|ref|YP_003403094.1| - 5.6e-27 94.3 0.5 1.4e-26 93.1 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_17 PF17668.1 gi|284164815|ref|YP_003403094.1| - 3.8e-24 85.7 0.4 1.1e-23 84.3 0.4 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|284164815|ref|YP_003403094.1| - 4.3e-22 78.5 0.0 7.7e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_7 PF13508.7 gi|284164815|ref|YP_003403094.1| - 0.0017 18.8 0.1 0.014 15.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Terminase_GpA PF05876.12 gi|284164815|ref|YP_003403094.1| - 0.0045 15.6 0.0 0.0066 15.1 0.0 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Acetyltransf_1 PF00583.25 gi|284164815|ref|YP_003403094.1| - 0.0058 16.9 0.1 0.8 10.0 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284164815|ref|YP_003403094.1| - 0.059 13.3 0.0 1.5 8.8 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain OCD_Mu_crystall PF02423.15 gi|284164816|ref|YP_003403095.1| - 4.7e-59 199.9 0.5 6.4e-59 199.5 0.5 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|284164816|ref|YP_003403095.1| - 0.00014 22.0 0.0 0.00031 20.8 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|284164816|ref|YP_003403095.1| - 0.0015 19.1 0.1 0.003 18.1 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|284164816|ref|YP_003403095.1| - 0.071 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus PAS_4 PF08448.10 gi|284164817|ref|YP_003403096.1| - 1.2e-23 83.5 7.5 3.7e-14 52.9 0.4 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|284164817|ref|YP_003403096.1| - 4.7e-15 55.6 0.2 3.2e-06 27.1 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|284164817|ref|YP_003403096.1| - 1.8e-13 50.6 0.3 1.9e-06 28.1 0.2 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|284164817|ref|YP_003403096.1| - 9.4e-12 44.7 0.3 0.0001 22.2 0.1 2.9 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|284164817|ref|YP_003403096.1| - 1.5e-11 44.7 4.7 5.1e-11 43.0 0.1 2.9 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|284164817|ref|YP_003403096.1| - 4.1e-06 27.2 0.0 1.8e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|284164817|ref|YP_003403096.1| - 0.00011 22.7 0.0 0.00024 21.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MerR-DNA-bind PF09278.11 gi|284164817|ref|YP_003403096.1| - 0.042 14.4 1.5 0.18 12.4 1.5 2.1 1 0 0 1 1 1 0 MerR, DNA binding HalX PF08663.10 gi|284164818|ref|YP_003403097.1| - 1.6e-22 79.6 6.8 3.6e-22 78.4 6.8 1.7 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|284164818|ref|YP_003403097.1| - 1e-18 67.5 0.9 1.6e-18 66.9 0.3 1.6 2 0 0 2 2 2 1 Response regulator receiver domain Lipase_GDSL_2 PF13472.6 gi|284164818|ref|YP_003403097.1| - 0.076 13.4 0.1 0.11 12.9 0.1 1.3 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family AIRS_C PF02769.22 gi|284164819|ref|YP_003403098.1| - 1.2e-44 152.2 7.6 1.1e-31 110.0 1.6 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|284164819|ref|YP_003403098.1| - 1.1e-40 138.2 7.4 4.6e-23 81.7 0.3 3.0 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|284164819|ref|YP_003403098.1| - 3e-06 27.7 0.1 6.5e-06 26.6 0.1 1.6 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|284164819|ref|YP_003403098.1| - 0.035 14.5 0.8 0.46 10.9 0.0 2.6 2 0 0 2 2 2 0 GHMP kinases C terminal PAS_9 PF13426.7 gi|284164821|ref|YP_003403100.1| - 5.6e-56 187.2 1.9 1.9e-12 47.3 0.0 5.8 6 0 0 6 6 6 5 PAS domain PAS_4 PF08448.10 gi|284164821|ref|YP_003403100.1| - 2.7e-53 178.9 19.2 5.4e-13 49.2 0.1 6.4 6 0 0 6 6 6 5 PAS fold PAS PF00989.25 gi|284164821|ref|YP_003403100.1| - 3.8e-46 155.7 3.8 8.8e-10 38.6 0.1 5.8 5 1 0 5 5 5 5 PAS fold BAT PF15915.5 gi|284164821|ref|YP_003403100.1| - 3.9e-46 156.8 11.2 3.9e-46 156.8 11.2 3.1 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS_3 PF08447.12 gi|284164821|ref|YP_003403100.1| - 7.1e-44 148.0 0.1 4.8e-17 62.0 0.1 6.7 5 3 0 5 5 5 5 PAS fold PAS_8 PF13188.7 gi|284164821|ref|YP_003403100.1| - 1.2e-28 98.6 4.7 1e-06 28.6 0.1 5.7 5 0 0 5 5 5 5 PAS domain HTH_10 PF04967.12 gi|284164821|ref|YP_003403100.1| - 3.8e-17 61.8 0.0 1e-16 60.4 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|284164821|ref|YP_003403100.1| - 5e-08 33.3 0.2 5e-08 33.3 0.2 3.5 5 0 0 5 5 5 1 GAF domain GAF_3 PF13492.6 gi|284164821|ref|YP_003403100.1| - 2.8e-06 27.7 0.1 1.3e-05 25.5 0.1 2.2 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|284164821|ref|YP_003403100.1| - 3.3e-06 27.2 3.2 1.5 9.0 0.1 5.4 5 2 0 5 5 5 2 PAS fold PAS_12 PF18095.1 gi|284164821|ref|YP_003403100.1| - 0.0007 19.3 0.0 16 5.1 0.0 4.3 5 0 0 5 5 5 0 UPF0242 C-terminal PAS-like domain ZNRF_3_ecto PF18212.1 gi|284164821|ref|YP_003403100.1| - 0.082 12.9 0.3 4.4 7.4 0.0 3.3 3 0 0 3 3 3 0 ZNRF-3 Ectodomain PAS_11 PF14598.6 gi|284164821|ref|YP_003403100.1| - 0.088 12.9 0.0 19 5.4 0.0 3.4 4 0 0 4 4 4 0 PAS domain DUF1492 PF07374.11 gi|284164821|ref|YP_003403100.1| - 0.12 12.5 0.1 8.5 6.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1492) Bro-N PF02498.17 gi|284164821|ref|YP_003403100.1| - 0.15 12.7 0.0 19 6.0 0.0 3.3 3 0 0 3 3 3 0 BRO family, N-terminal domain Paz_1 PF18349.1 gi|284164821|ref|YP_003403100.1| - 0.17 11.9 0.7 84 3.2 0.0 4.1 4 1 1 5 5 5 0 PAZ domain HxlR PF01638.17 gi|284164822|ref|YP_003403101.1| - 7.7e-20 70.5 0.0 9.4e-20 70.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|284164822|ref|YP_003403101.1| - 1.2e-05 25.4 0.0 1.6e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|284164822|ref|YP_003403101.1| - 0.00028 21.3 0.0 0.0004 20.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|284164822|ref|YP_003403101.1| - 0.0003 20.6 0.0 0.00041 20.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|284164822|ref|YP_003403101.1| - 0.004 17.0 0.0 0.0073 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284164822|ref|YP_003403101.1| - 0.0047 16.8 0.0 0.0076 16.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284164822|ref|YP_003403101.1| - 0.0063 16.4 0.1 0.0096 15.8 0.1 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|284164822|ref|YP_003403101.1| - 0.0074 16.2 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Trp_repressor PF01371.19 gi|284164822|ref|YP_003403101.1| - 0.008 16.3 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein HTH_20 PF12840.7 gi|284164822|ref|YP_003403101.1| - 0.081 13.0 0.3 0.11 12.6 0.3 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|284164822|ref|YP_003403101.1| - 0.094 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.9 gi|284164822|ref|YP_003403101.1| - 0.12 12.5 0.1 15 5.8 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) OGFr_N PF04664.13 gi|284164822|ref|YP_003403101.1| - 0.18 11.3 0.0 0.24 10.9 0.0 1.1 1 0 0 1 1 1 0 Opioid growth factor receptor (OGFr) conserved region RVT_3 PF13456.6 gi|284164824|ref|YP_003403103.1| - 7.5e-11 41.9 0.0 1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|284164824|ref|YP_003403103.1| - 1.1e-08 35.4 0.0 1.9e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 RNase H DUF1015 PF06245.11 gi|284164824|ref|YP_003403103.1| - 0.14 11.0 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) Polyketide_cyc2 PF10604.9 gi|284164825|ref|YP_003403104.1| - 3.2e-13 50.2 2.1 4.2e-13 49.8 2.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|284164825|ref|YP_003403104.1| - 2.8e-07 30.8 0.2 3.5e-07 30.5 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ABC_tran PF00005.27 gi|284164826|ref|YP_003403105.1| - 3.4e-28 98.9 0.0 5.2e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164826|ref|YP_003403105.1| - 4.4e-13 49.7 0.6 9.5e-08 32.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284164826|ref|YP_003403105.1| - 3.8e-08 33.9 0.0 8.7e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|284164826|ref|YP_003403105.1| - 0.0003 20.6 0.0 0.00059 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284164826|ref|YP_003403105.1| - 0.0072 16.6 0.1 0.02 15.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|284164826|ref|YP_003403105.1| - 0.0087 16.6 0.2 0.036 14.6 0.2 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284164826|ref|YP_003403105.1| - 0.0098 16.3 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|284164826|ref|YP_003403105.1| - 0.027 14.1 0.5 0.053 13.1 0.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|284164826|ref|YP_003403105.1| - 0.034 14.4 0.6 1.1 9.4 0.1 2.5 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|284164826|ref|YP_003403105.1| - 0.043 13.4 0.1 0.082 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|284164826|ref|YP_003403105.1| - 0.079 12.7 0.0 0.82 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain CCB2_CCB4 PF11152.8 gi|284164826|ref|YP_003403105.1| - 0.11 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B, CCB2/CCB4 SMC_N PF02463.19 gi|284164826|ref|YP_003403105.1| - 0.2 11.1 0.2 4.9 6.5 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284164826|ref|YP_003403105.1| - 0.21 11.4 0.1 0.37 10.6 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|284164826|ref|YP_003403105.1| - 0.45 10.9 1.5 1.5 9.2 1.5 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane_2 PF12679.7 gi|284164827|ref|YP_003403106.1| - 2.3e-08 33.7 2.2 1e-07 31.6 0.0 2.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284164828|ref|YP_003403107.1| - 4.8e-13 48.9 0.0 8.1e-13 48.2 0.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|284164828|ref|YP_003403107.1| - 5.3e-11 42.3 7.9 7e-11 41.9 7.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284164828|ref|YP_003403107.1| - 0.00026 21.0 1.3 0.00026 21.0 1.3 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein Rnk_N PF14760.6 gi|284164828|ref|YP_003403107.1| - 0.52 10.8 3.6 1.8 9.1 0.0 2.6 2 0 0 2 2 2 0 Rnk N-terminus Aldo_ket_red PF00248.21 gi|284164830|ref|YP_003403109.1| - 1.6e-72 244.2 0.0 1.7e-72 244.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PadR PF03551.14 gi|284164832|ref|YP_003403111.1| - 1.5e-05 24.9 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|284164832|ref|YP_003403111.1| - 0.00051 20.2 0.0 0.00091 19.4 0.0 1.5 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.7 gi|284164832|ref|YP_003403111.1| - 0.003 17.6 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2513 PF10711.9 gi|284164832|ref|YP_003403111.1| - 0.0087 16.3 0.0 0.014 15.7 0.0 1.4 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) TrmB PF01978.19 gi|284164832|ref|YP_003403111.1| - 0.012 15.5 0.0 0.025 14.4 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|284164832|ref|YP_003403111.1| - 0.061 13.2 0.0 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|284164832|ref|YP_003403111.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|284164832|ref|YP_003403111.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 1 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|284164832|ref|YP_003403111.1| - 0.14 12.2 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain UreF PF01730.16 gi|284164833|ref|YP_003403112.1| - 4.9e-33 114.5 0.4 6.8e-33 114.1 0.4 1.2 1 0 0 1 1 1 1 UreF UreE_N PF02814.15 gi|284164834|ref|YP_003403113.1| - 1.9e-10 40.2 3.4 4.3e-10 39.0 3.4 1.6 1 0 0 1 1 1 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.12 gi|284164834|ref|YP_003403113.1| - 3.3e-05 24.3 42.0 4 8.0 42.0 2.8 1 1 0 1 1 1 1 UreE urease accessory protein, C-terminal domain UreD PF01774.17 gi|284164835|ref|YP_003403114.1| - 1.4e-42 146.0 0.1 1.8e-42 145.7 0.1 1.1 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.19 gi|284164836|ref|YP_003403115.1| - 3.8e-32 111.3 0.0 4.5e-32 111.0 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|284164836|ref|YP_003403115.1| - 7.4e-09 35.0 0.6 5.3e-08 32.2 0.6 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MobB PF03205.14 gi|284164836|ref|YP_003403115.1| - 1.2e-06 28.5 0.0 4.6e-06 26.6 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|284164836|ref|YP_003403115.1| - 0.0063 16.4 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 NTPase RsgA_GTPase PF03193.16 gi|284164836|ref|YP_003403115.1| - 0.013 15.4 0.0 4.6 7.1 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|284164836|ref|YP_003403115.1| - 0.019 15.5 0.0 0.035 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|284164836|ref|YP_003403115.1| - 0.024 15.0 0.0 0.027 14.9 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|284164836|ref|YP_003403115.1| - 0.038 13.9 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|284164836|ref|YP_003403115.1| - 0.04 14.2 0.0 0.076 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|284164836|ref|YP_003403115.1| - 0.059 13.3 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|284164836|ref|YP_003403115.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.5 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|284164836|ref|YP_003403115.1| - 0.11 12.0 0.1 11 5.5 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain TsaE PF02367.17 gi|284164836|ref|YP_003403115.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|284164836|ref|YP_003403115.1| - 0.16 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|284164836|ref|YP_003403115.1| - 0.16 11.0 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_7 PF12775.7 gi|284164836|ref|YP_003403115.1| - 0.2 11.1 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region KTI12 PF08433.10 gi|284164836|ref|YP_003403115.1| - 0.23 10.9 0.0 0.34 10.3 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Urease_gamma PF00547.18 gi|284164837|ref|YP_003403116.1| - 4.2e-42 142.5 0.0 4.9e-42 142.3 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit Svf1_C PF17187.4 gi|284164837|ref|YP_003403116.1| - 0.03 14.1 0.0 0.037 13.9 0.0 1.1 1 0 0 1 1 1 0 Svf1-like C-terminal lipocalin-like domain PolyA_pol_RNAbd PF12627.7 gi|284164837|ref|YP_003403116.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Probable RNA and SrmB- binding site of polymerase A Amidohydro_1 PF01979.20 gi|284164838|ref|YP_003403117.1| - 1.4e-66 225.1 0.4 2e-66 224.7 0.4 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|284164838|ref|YP_003403117.1| - 5.7e-47 159.0 1.6 1.1e-46 158.0 1.6 1.5 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 gi|284164838|ref|YP_003403117.1| - 5.5e-08 32.7 8.2 3.1e-07 30.2 2.5 2.8 1 1 1 2 2 2 2 Amidohydrolase family Urease_beta PF00699.20 gi|284164839|ref|YP_003403118.1| - 3e-42 142.6 0.0 3.7e-42 142.3 0.0 1.1 1 0 0 1 1 1 1 Urease beta subunit Peripla_BP_5 PF13433.6 gi|284164840|ref|YP_003403119.1| - 8.5e-79 265.2 0.3 1.1e-78 264.8 0.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_6 PF13458.6 gi|284164840|ref|YP_003403119.1| - 2.4e-75 254.4 0.2 3e-75 254.0 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|284164840|ref|YP_003403119.1| - 5.1e-05 22.5 0.0 6.7e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Lig_C PF18330.1 gi|284164840|ref|YP_003403119.1| - 0.15 12.1 0.0 0.83 9.7 0.0 2.1 2 1 0 2 2 2 0 Ligase Pab1020 C-terminal region TAT_signal PF10518.9 gi|284164840|ref|YP_003403119.1| - 0.2 11.5 1.5 0.39 10.6 1.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|284164841|ref|YP_003403120.1| - 4.5e-37 127.7 43.6 6e-37 127.2 43.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|284164842|ref|YP_003403121.1| - 2.5e-31 108.9 46.5 2.5e-31 108.9 46.5 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component PGI PF00342.19 gi|284164842|ref|YP_003403121.1| - 0.098 11.2 0.1 0.15 10.7 0.1 1.2 1 0 0 1 1 1 0 Phosphoglucose isomerase NDUF_B12 PF08122.12 gi|284164842|ref|YP_003403121.1| - 9.1 6.4 6.3 1.1 9.3 0.3 2.8 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family ABC_tran PF00005.27 gi|284164843|ref|YP_003403122.1| - 4.2e-33 114.8 0.0 6.7e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164843|ref|YP_003403122.1| - 1.8e-07 31.3 0.6 0.0004 20.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284164843|ref|YP_003403122.1| - 1.8e-05 24.3 0.2 0.084 12.3 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|284164843|ref|YP_003403122.1| - 0.00017 21.5 0.0 0.00034 20.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|284164843|ref|YP_003403122.1| - 0.00061 20.3 0.1 0.0011 19.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284164843|ref|YP_003403122.1| - 0.00076 19.8 0.0 0.0026 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|284164843|ref|YP_003403122.1| - 0.0011 18.7 0.0 0.0038 17.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|284164843|ref|YP_003403122.1| - 0.0017 18.1 0.1 0.0032 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|284164843|ref|YP_003403122.1| - 0.0023 17.5 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|284164843|ref|YP_003403122.1| - 0.0044 17.1 0.0 0.0068 16.5 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase BCA_ABC_TP_C PF12399.8 gi|284164843|ref|YP_003403122.1| - 0.011 15.6 0.1 0.024 14.5 0.1 1.6 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_30 PF13604.6 gi|284164843|ref|YP_003403122.1| - 0.049 13.3 0.1 0.17 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|284164843|ref|YP_003403122.1| - 0.067 13.6 0.1 0.21 12.0 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 gi|284164843|ref|YP_003403122.1| - 0.071 13.2 0.1 0.37 10.8 0.0 1.9 2 0 0 2 2 2 0 Dynamin family AAA_25 PF13481.6 gi|284164843|ref|YP_003403122.1| - 0.075 12.6 0.1 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|284164843|ref|YP_003403122.1| - 0.16 12.4 0.0 0.31 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|284164844|ref|YP_003403123.1| - 1.8e-33 115.9 0.0 2.6e-33 115.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164844|ref|YP_003403123.1| - 3.1e-08 33.8 0.0 0.0024 17.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284164844|ref|YP_003403123.1| - 0.00018 21.2 0.1 0.0003 20.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284164844|ref|YP_003403123.1| - 0.0019 18.7 0.1 0.003 18.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284164844|ref|YP_003403123.1| - 0.0042 17.3 0.0 0.16 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284164844|ref|YP_003403123.1| - 0.0066 16.9 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|284164844|ref|YP_003403123.1| - 0.0073 16.4 0.0 0.023 14.7 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|284164844|ref|YP_003403123.1| - 0.01 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|284164844|ref|YP_003403123.1| - 0.012 15.4 0.1 0.03 14.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284164844|ref|YP_003403123.1| - 0.014 15.8 0.1 0.022 15.2 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|284164844|ref|YP_003403123.1| - 0.015 14.5 0.3 0.028 13.6 0.3 1.4 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.19 gi|284164844|ref|YP_003403123.1| - 0.021 14.3 0.0 0.19 11.2 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|284164844|ref|YP_003403123.1| - 0.024 14.4 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|284164844|ref|YP_003403123.1| - 0.025 14.5 1.3 0.037 13.9 0.2 1.8 2 1 0 2 2 2 0 NTPase MobB PF03205.14 gi|284164844|ref|YP_003403123.1| - 0.026 14.4 0.3 0.047 13.6 0.3 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.6 gi|284164844|ref|YP_003403123.1| - 0.029 14.1 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain ATP-synt_ab PF00006.25 gi|284164844|ref|YP_003403123.1| - 0.051 13.2 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.6 gi|284164844|ref|YP_003403123.1| - 0.059 13.9 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|284164844|ref|YP_003403123.1| - 0.061 13.2 0.2 0.097 12.6 0.2 1.3 1 0 0 1 1 1 0 NACHT domain MeaB PF03308.16 gi|284164844|ref|YP_003403123.1| - 0.065 12.2 0.1 0.1 11.5 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|284164844|ref|YP_003403123.1| - 0.071 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|284164844|ref|YP_003403123.1| - 0.095 12.6 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CBS PF00571.28 gi|284164845|ref|YP_003403124.1| - 4.2e-21 75.2 0.1 8.9e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.6 gi|284164845|ref|YP_003403124.1| - 2.8e-11 43.6 1.9 5.1e-11 42.8 1.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|284164845|ref|YP_003403124.1| - 3.1e-11 43.2 0.1 6.4e-11 42.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|284164845|ref|YP_003403124.1| - 5.3e-07 29.6 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|284164845|ref|YP_003403124.1| - 0.00016 21.5 0.9 0.00093 19.0 0.1 2.5 2 1 0 3 3 3 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|284164845|ref|YP_003403124.1| - 0.00021 21.1 0.0 0.00059 19.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|284164845|ref|YP_003403124.1| - 0.0039 17.1 0.0 0.013 15.5 0.0 1.9 1 1 0 1 1 1 1 Pou domain - N-terminal to homeobox domain HTH_26 PF13443.6 gi|284164845|ref|YP_003403124.1| - 0.018 15.5 0.1 0.038 14.4 0.0 1.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|284164845|ref|YP_003403124.1| - 0.15 11.6 0.3 5.6 6.6 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF555 PF04475.12 gi|284164846|ref|YP_003403125.1| - 1.1e-47 160.6 0.1 1.2e-47 160.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) BTP PF05232.12 gi|284164847|ref|YP_003403126.1| - 0.026 14.6 1.2 0.028 14.5 1.2 1.1 1 0 0 1 1 1 0 Chlorhexidine efflux transporter Ost4 PF10215.9 gi|284164847|ref|YP_003403126.1| - 0.26 11.1 0.6 0.26 11.1 0.6 1.9 2 0 0 2 2 2 0 Oligosaccaryltransferase Proteasome PF00227.26 gi|284164848|ref|YP_003403127.1| - 1.1e-43 149.0 0.2 1.3e-43 148.7 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit GFO_IDH_MocA PF01408.22 gi|284164849|ref|YP_003403128.1| - 1.1e-27 97.2 0.6 2.8e-27 95.9 0.1 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284164849|ref|YP_003403128.1| - 7.2e-07 29.2 0.0 1.4e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|284164849|ref|YP_003403128.1| - 6.6e-05 23.4 0.1 0.00018 22.0 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284164849|ref|YP_003403128.1| - 0.00035 20.8 1.2 0.0013 18.9 0.1 2.4 2 2 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|284164849|ref|YP_003403128.1| - 0.00094 18.8 0.4 0.0022 17.6 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|284164849|ref|YP_003403128.1| - 0.022 14.1 0.1 0.047 13.1 0.1 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|284164849|ref|YP_003403128.1| - 0.023 15.3 0.6 0.053 14.2 0.3 1.7 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|284164849|ref|YP_003403128.1| - 0.034 14.8 0.3 0.12 13.0 0.1 2.0 2 0 0 2 2 2 0 CoA binding domain ThuA PF06283.11 gi|284164850|ref|YP_003403129.1| - 2.6e-32 112.8 0.0 3.1e-32 112.5 0.0 1.1 1 0 0 1 1 1 1 Trehalose utilisation IF-2B PF01008.17 gi|284164851|ref|YP_003403130.1| - 3.6e-49 167.5 0.1 4.3e-49 167.2 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ApoLp-III PF07464.11 gi|284164851|ref|YP_003403130.1| - 0.0073 16.4 3.2 0.012 15.7 3.2 1.3 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) LPD5 PF18799.1 gi|284164851|ref|YP_003403130.1| - 0.038 14.4 0.8 6.4 7.2 0.0 2.7 1 1 2 3 3 3 0 Large polyvalent protein-associated domain 5 EzrA PF06160.12 gi|284164851|ref|YP_003403130.1| - 0.087 11.0 0.4 0.11 10.6 0.4 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA TrmE_N PF10396.9 gi|284164851|ref|YP_003403130.1| - 0.096 13.0 1.6 10 6.5 0.1 2.2 1 1 1 2 2 2 0 GTP-binding protein TrmE N-terminus DUF2383 PF09537.10 gi|284164851|ref|YP_003403130.1| - 1 9.7 4.6 4.4 7.7 0.4 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF2383) zinc_ribbon_10 PF10058.9 gi|284164853|ref|YP_003403132.1| - 0.17 11.6 0.4 0.51 10.1 0.2 1.8 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Multi_Drug_Res PF00893.19 gi|284164854|ref|YP_003403133.1| - 2.3e-26 92.3 3.5 3.1e-26 91.9 3.5 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein DUF4131 PF13567.6 gi|284164854|ref|YP_003403133.1| - 5.2 6.7 8.7 7.3 6.2 0.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ParA PF10609.9 gi|284164855|ref|YP_003403134.1| - 7.6e-100 333.4 0.0 9.2e-100 333.1 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase FeS_assembly_P PF01883.19 gi|284164855|ref|YP_003403134.1| - 5e-15 55.4 0.9 1.3e-14 54.1 0.4 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|284164855|ref|YP_003403134.1| - 2.8e-14 53.3 0.0 2.4e-13 50.2 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284164855|ref|YP_003403134.1| - 5.7e-10 39.4 0.3 8.4e-08 32.3 0.2 2.1 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|284164855|ref|YP_003403134.1| - 1.3e-07 31.1 0.0 1.9e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|284164855|ref|YP_003403134.1| - 0.00015 21.3 0.0 0.039 13.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|284164855|ref|YP_003403134.1| - 0.00055 19.3 0.0 0.00091 18.6 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|284164855|ref|YP_003403134.1| - 0.0017 17.6 4.9 0.0026 17.0 1.3 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|284164855|ref|YP_003403134.1| - 0.0075 15.9 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF1610 PF07754.11 gi|284164855|ref|YP_003403134.1| - 0.027 14.4 0.2 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CLP1_P PF16575.5 gi|284164855|ref|YP_003403134.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|284164855|ref|YP_003403134.1| - 0.17 11.3 1.4 1.1 8.7 0.6 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ HHH_5 PF14520.6 gi|284164857|ref|YP_003403136.1| - 6.2e-08 33.1 5.0 9e-08 32.6 0.1 3.5 4 1 1 5 5 5 1 Helix-hairpin-helix domain DUF3437 PF11919.8 gi|284164857|ref|YP_003403136.1| - 0.0011 18.8 2.1 0.0093 15.9 0.1 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3437) Apolipoprotein PF01442.18 gi|284164857|ref|YP_003403136.1| - 0.0036 17.2 42.3 0.19 11.6 9.6 2.5 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Cdd1 PF11731.8 gi|284164857|ref|YP_003403136.1| - 0.023 14.9 0.0 0.09 13.0 0.0 2.1 1 0 0 1 1 1 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|284164857|ref|YP_003403136.1| - 0.041 13.7 1.2 0.69 9.8 0.0 3.3 3 1 0 3 3 3 0 Fingers domain of DNA polymerase lambda AbiH PF14253.6 gi|284164857|ref|YP_003403136.1| - 0.05 13.5 5.4 0.055 13.3 4.1 1.6 1 1 1 2 2 2 0 Bacteriophage abortive infection AbiH DUF4332 PF14229.6 gi|284164857|ref|YP_003403136.1| - 0.055 13.7 0.7 0.055 13.7 0.7 4.1 3 2 0 4 4 4 0 Domain of unknown function (DUF4332) Ndc1_Nup PF09531.10 gi|284164857|ref|YP_003403136.1| - 2 7.0 5.7 2.9 6.5 5.7 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup ApoO PF09769.9 gi|284164857|ref|YP_003403136.1| - 2.1 8.3 9.6 21 5.1 6.1 3.4 2 2 0 2 2 2 0 Apolipoprotein O ApoLp-III PF07464.11 gi|284164857|ref|YP_003403136.1| - 4.4 7.4 25.6 2.8 8.0 20.8 3.0 2 1 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) UDG PF03167.19 gi|284164858|ref|YP_003403137.1| - 1.1e-20 74.1 0.0 1.6e-20 73.7 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NqrM PF04400.13 gi|284164858|ref|YP_003403137.1| - 0.033 13.9 0.1 0.064 13.0 0.1 1.5 1 0 0 1 1 1 0 (Na+)-NQR maturation NqrM Phage_holin_3_6 PF07332.11 gi|284164859|ref|YP_003403138.1| - 0.12 12.4 5.8 0.15 12.1 5.8 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4342 PF14242.6 gi|284164859|ref|YP_003403138.1| - 0.4 10.7 6.2 4.2 7.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) DUF2064 PF09837.9 gi|284164860|ref|YP_003403139.1| - 6.1e-05 22.8 0.1 0.00016 21.5 0.1 1.6 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2064) Phage_holin_3_6 PF07332.11 gi|284164861|ref|YP_003403140.1| - 0.084 12.9 3.5 0.095 12.7 2.8 1.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DAGK_cat PF00781.24 gi|284164862|ref|YP_003403141.1| - 2.4e-23 82.1 0.5 3.6e-23 81.5 0.5 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain EspB PF05802.11 gi|284164862|ref|YP_003403141.1| - 0.05 13.6 0.5 0.05 13.6 0.5 2.0 2 0 0 2 2 2 0 Enterobacterial EspB protein NAD_kinase PF01513.21 gi|284164862|ref|YP_003403141.1| - 0.11 11.6 0.1 0.18 11.0 0.1 1.3 1 0 0 1 1 1 0 ATP-NAD kinase Form_Nir_trans PF01226.17 gi|284164863|ref|YP_003403142.1| - 1e-34 120.0 8.9 1.1e-34 119.8 8.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter AA_permease PF00324.21 gi|284164864|ref|YP_003403143.1| - 2.1e-22 79.4 36.8 2.9e-22 78.9 36.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|284164864|ref|YP_003403143.1| - 7.9e-08 32.3 3.6 7.9e-08 32.3 3.6 2.5 2 0 0 2 2 2 1 C-terminus of AA_permease Usp PF00582.26 gi|284164864|ref|YP_003403143.1| - 1.2e-06 29.0 5.1 0.00091 19.8 0.5 2.5 2 0 0 2 2 2 2 Universal stress protein family Chlorosome_CsmC PF11098.8 gi|284164864|ref|YP_003403143.1| - 0.62 10.0 5.4 0.28 11.2 0.2 2.7 2 0 0 2 2 2 0 Chlorosome envelope protein C Form_Nir_trans PF01226.17 gi|284164865|ref|YP_003403144.1| - 2.5e-44 151.4 17.7 2.8e-44 151.2 17.7 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Zip PF02535.22 gi|284164866|ref|YP_003403145.1| - 9e-05 21.8 3.0 0.001 18.4 0.1 2.2 2 0 0 2 2 2 2 ZIP Zinc transporter DUF4203 PF13886.6 gi|284164866|ref|YP_003403145.1| - 5.6 6.6 16.5 0.035 13.8 5.4 2.4 2 2 0 2 2 2 0 Domain of unknown function (DUF4203) AI-2E_transport PF01594.16 gi|284164867|ref|YP_003403146.1| - 5.1e-26 91.6 22.9 6.7e-26 91.2 22.9 1.1 1 0 0 1 1 1 1 AI-2E family transporter Abhydrolase_9_N PF15420.6 gi|284164867|ref|YP_003403146.1| - 4.9 7.1 14.9 0.045 13.8 2.7 3.1 2 1 1 3 3 3 0 Alpha/beta-hydrolase family N-terminus DUF21 PF01595.20 gi|284164868|ref|YP_003403147.1| - 1.1e-44 152.2 4.4 1.5e-44 151.8 4.4 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|284164868|ref|YP_003403147.1| - 3.1e-21 75.2 1.4 6.3e-21 74.2 0.2 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|284164868|ref|YP_003403147.1| - 8.8e-14 51.7 5.6 5.7e-07 29.9 0.4 3.2 3 0 0 3 3 3 2 CBS domain GCS2 PF04107.13 gi|284164869|ref|YP_003403148.1| - 2.1e-10 40.5 0.2 4.4e-10 39.4 0.2 1.6 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) HpcH_HpaI PF03328.14 gi|284164870|ref|YP_003403149.1| - 4.3e-16 58.7 0.0 1.9e-15 56.6 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.22 gi|284164870|ref|YP_003403149.1| - 0.075 11.3 0.0 0.58 8.4 0.0 2.1 2 1 1 3 3 3 0 Malate synthase MaoC_dehydratas PF01575.19 gi|284164871|ref|YP_003403150.1| - 7.8e-08 31.9 0.0 1.9e-05 24.2 0.0 2.2 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284164871|ref|YP_003403150.1| - 2.2e-05 24.6 0.2 0.038 14.1 0.0 2.6 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MAAL_C PF07476.11 gi|284164872|ref|YP_003403151.1| - 1e-114 381.9 0.0 1.4e-114 381.4 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|284164872|ref|YP_003403151.1| - 2.3e-70 235.3 0.3 3.8e-70 234.6 0.3 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|284164872|ref|YP_003403151.1| - 7.1e-12 45.4 0.2 1.2e-11 44.6 0.2 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like Met_asp_mut_E PF06368.11 gi|284164873|ref|YP_003403152.1| - 1.1e-207 689.8 0.0 1.3e-207 689.6 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) B12-binding PF02310.19 gi|284164874|ref|YP_003403153.1| - 2.4e-17 63.1 0.9 2.9e-17 62.8 0.9 1.1 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|284164874|ref|YP_003403153.1| - 0.013 15.5 0.3 0.31 11.0 0.0 2.1 1 1 1 2 2 2 0 Zinc-binding dehydrogenase CoA_transf_3 PF02515.17 gi|284164875|ref|YP_003403154.1| - 5.8e-123 410.6 0.0 6.6e-123 410.5 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III HEPN_STY4199 PF18729.1 gi|284164876|ref|YP_003403155.1| - 0.16 11.2 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 STY4199-like HEPN RAP1 PF07218.11 gi|284164876|ref|YP_003403155.1| - 0.38 9.0 4.0 0.51 8.6 4.0 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) GCH_III PF05165.12 gi|284164878|ref|YP_003403157.1| - 5e-88 294.5 0.4 6e-88 294.3 0.4 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|284164878|ref|YP_003403157.1| - 5.8e-05 23.3 0.1 0.0081 16.4 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|284164878|ref|YP_003403157.1| - 0.041 14.2 0.0 0.11 12.8 0.0 1.6 2 0 0 2 2 2 0 minimal CRISPR polymerase domain CBS PF00571.28 gi|284164879|ref|YP_003403158.1| - 1.1e-21 77.1 6.1 1.8e-12 47.5 0.6 2.2 2 0 0 2 2 2 2 CBS domain TF_Zn_Ribbon PF08271.12 gi|284164879|ref|YP_003403158.1| - 1.3 8.6 5.6 0.34 10.5 1.3 2.3 2 1 1 3 3 3 0 TFIIB zinc-binding PGK PF00162.19 gi|284164880|ref|YP_003403159.1| - 2.4e-104 349.3 0.0 2.7e-104 349.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Acetyltransf_1 PF00583.25 gi|284164881|ref|YP_003403160.1| - 5.6e-20 71.7 0.1 7.4e-20 71.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284164881|ref|YP_003403160.1| - 2.5e-14 53.3 0.1 3.7e-14 52.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284164881|ref|YP_003403160.1| - 5.9e-12 45.8 0.0 9e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284164881|ref|YP_003403160.1| - 1.8e-09 37.4 0.1 3e-09 36.7 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|284164881|ref|YP_003403160.1| - 5.8e-07 29.6 0.2 1.2e-06 28.6 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|284164881|ref|YP_003403160.1| - 2.3e-06 27.4 0.3 3.5e-06 26.8 0.3 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284164881|ref|YP_003403160.1| - 1.1e-05 26.2 0.1 1.3e-05 25.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284164881|ref|YP_003403160.1| - 0.00022 21.4 0.0 0.00024 21.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284164881|ref|YP_003403160.1| - 0.0013 18.8 0.0 0.0024 18.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|284164881|ref|YP_003403160.1| - 0.002 17.8 0.6 0.0053 16.5 0.6 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|284164881|ref|YP_003403160.1| - 0.0072 16.3 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase VKG_Carbox PF05090.14 gi|284164882|ref|YP_003403161.1| - 3e-16 59.3 0.1 3.9e-16 58.9 0.1 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase Usp PF00582.26 gi|284164883|ref|YP_003403162.1| - 2e-31 109.4 3.3 2e-31 109.4 3.3 1.8 2 0 0 2 2 2 1 Universal stress protein family E1_dh PF00676.20 gi|284164884|ref|YP_003403163.1| - 7.7e-66 222.1 0.0 9.4e-66 221.8 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|284164884|ref|YP_003403163.1| - 6.6e-06 25.5 0.1 1.2e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|284164884|ref|YP_003403163.1| - 6.3e-05 22.8 1.3 0.0026 17.6 0.2 3.1 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|284164884|ref|YP_003403163.1| - 0.0095 14.9 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 gi|284164885|ref|YP_003403164.1| - 1.6e-44 151.7 0.9 3e-44 150.8 0.9 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|284164885|ref|YP_003403164.1| - 5.3e-36 123.2 1.1 8.6e-36 122.6 1.1 1.3 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|284164885|ref|YP_003403164.1| - 1.1e-06 28.9 0.1 2.6e-06 27.7 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Fumerase_C PF05683.12 gi|284164885|ref|YP_003403164.1| - 0.049 13.0 0.1 0.11 11.8 0.1 1.6 1 0 0 1 1 1 0 Fumarase C-terminus Biotin_lipoyl PF00364.22 gi|284164886|ref|YP_003403165.1| - 2.4e-14 52.9 0.2 3.5e-14 52.4 0.2 1.2 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|284164886|ref|YP_003403165.1| - 0.00018 21.3 0.0 0.76 9.7 0.0 2.3 1 1 1 2 2 2 2 Biotin-lipoyl like PTS_EIIA_1 PF00358.20 gi|284164886|ref|YP_003403165.1| - 0.046 13.5 0.1 0.31 10.8 0.0 1.9 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 2-oxoacid_dh PF00198.23 gi|284164887|ref|YP_003403166.1| - 1.2e-67 227.7 0.0 1.6e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Yip1 PF04893.17 gi|284164888|ref|YP_003403167.1| - 2.6 7.7 21.1 1.1 9.0 7.9 2.6 2 1 0 2 2 2 0 Yip1 domain EI24 PF07264.11 gi|284164888|ref|YP_003403167.1| - 4.9 7.3 13.4 1.9 8.7 1.0 2.2 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) AMP-binding PF00501.28 gi|284164889|ref|YP_003403168.1| - 6.8e-105 351.1 0.0 8.1e-105 350.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284164889|ref|YP_003403168.1| - 1.3e-21 77.3 0.4 3.8e-21 75.9 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ECH_1 PF00378.20 gi|284164890|ref|YP_003403169.1| - 3.2e-49 167.5 0.0 3.9e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284164890|ref|YP_003403169.1| - 1.2e-34 120.3 0.0 1.8e-30 106.6 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase MOSC_N PF03476.16 gi|284164893|ref|YP_003403172.1| - 2.9e-09 36.8 0.0 6.6e-09 35.7 0.0 1.6 1 1 1 2 2 2 1 MOSC N-terminal beta barrel domain Baculo_PEP_C PF04513.12 gi|284164894|ref|YP_003403173.1| - 6.8e-26 91.0 48.9 2.5e-05 24.3 0.1 11.1 1 1 10 11 11 11 8 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|284164894|ref|YP_003403173.1| - 5.3e-24 85.1 119.7 2.4e-13 50.4 20.8 7.3 2 1 5 7 7 6 4 Apolipoprotein A1/A4/E domain DUF1664 PF07889.12 gi|284164894|ref|YP_003403173.1| - 5.8e-21 74.8 43.6 0.003 17.6 1.5 11.2 1 1 11 12 12 12 7 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|284164894|ref|YP_003403173.1| - 6e-15 55.0 39.4 0.0006 18.6 2.8 5.2 1 1 4 5 5 5 5 AAA domain Spc7 PF08317.11 gi|284164894|ref|YP_003403173.1| - 1.6e-14 53.5 70.5 4.7e-05 22.4 4.7 7.4 1 1 4 6 6 6 4 Spc7 kinetochore protein EzrA PF06160.12 gi|284164894|ref|YP_003403173.1| - 4.9e-14 51.4 44.2 7.8e-05 21.1 11.2 6.6 1 1 2 4 4 4 4 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|284164894|ref|YP_003403173.1| - 2.2e-12 47.1 55.6 0.0092 16.3 1.8 11.2 3 2 8 12 12 11 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 Exonuc_VII_L PF02601.15 gi|284164894|ref|YP_003403173.1| - 3.1e-12 46.7 15.6 0.054 13.1 2.7 5.9 1 1 2 3 3 3 3 Exonuclease VII, large subunit NPV_P10 PF05531.12 gi|284164894|ref|YP_003403173.1| - 1.3e-11 44.8 76.6 0.012 16.1 1.1 15.0 1 1 10 11 11 10 2 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.12 gi|284164894|ref|YP_003403173.1| - 2.2e-11 43.9 65.4 0.00016 21.7 4.4 9.2 2 2 6 8 8 8 5 TPR/MLP1/MLP2-like protein IFT57 PF10498.9 gi|284164894|ref|YP_003403173.1| - 5.6e-11 42.0 23.4 0.0063 15.5 0.0 5.7 2 2 4 6 6 6 5 Intra-flagellar transport protein 57 DUF3584 PF12128.8 gi|284164894|ref|YP_003403173.1| - 1.6e-09 36.0 78.8 6e-05 20.8 22.2 4.1 1 1 3 4 4 4 4 Protein of unknown function (DUF3584) Prominin PF05478.11 gi|284164894|ref|YP_003403173.1| - 2.2e-09 35.9 10.7 2.6e-05 22.4 0.1 4.1 1 1 3 4 4 4 2 Prominin Fib_alpha PF08702.10 gi|284164894|ref|YP_003403173.1| - 1.2e-08 35.3 11.6 0.65 10.2 0.2 8.0 1 1 9 10 10 10 1 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|284164894|ref|YP_003403173.1| - 2.1e-08 34.2 46.9 0.073 13.1 0.4 9.6 3 2 7 10 10 10 3 Laminin Domain II Spectrin PF00435.21 gi|284164894|ref|YP_003403173.1| - 3.5e-08 33.9 55.8 0.015 15.8 0.7 10.7 1 1 11 13 13 13 4 Spectrin repeat Snapin_Pallidin PF14712.6 gi|284164894|ref|YP_003403173.1| - 7.6e-08 32.7 22.3 0.007 16.8 0.1 9.9 4 4 5 10 10 9 1 Snapin/Pallidin SHE3 PF17078.5 gi|284164894|ref|YP_003403173.1| - 1.8e-07 31.1 30.3 0.0083 15.9 0.3 5.9 1 1 5 6 6 6 4 SWI5-dependent HO expression protein 3 DUF16 PF01519.16 gi|284164894|ref|YP_003403173.1| - 6.1e-07 29.9 38.5 1.4 9.4 0.8 9.9 1 1 9 11 11 11 1 Protein of unknown function DUF16 HMMR_N PF15905.5 gi|284164894|ref|YP_003403173.1| - 7.7e-07 28.9 44.7 0.00011 21.7 1.1 6.6 1 1 6 7 7 7 4 Hyaluronan mediated motility receptor N-terminal Filament PF00038.21 gi|284164894|ref|YP_003403173.1| - 8e-07 28.9 64.1 0.004 16.8 14.0 7.3 1 1 1 4 4 4 1 Intermediate filament protein Nup54 PF13874.6 gi|284164894|ref|YP_003403173.1| - 1.2e-06 28.7 25.6 0.009 16.1 2.1 8.4 1 1 6 8 8 8 1 Nucleoporin complex subunit 54 FlaC_arch PF05377.11 gi|284164894|ref|YP_003403173.1| - 1.3e-06 28.7 56.6 2.2 8.7 0.1 15.7 9 4 6 15 15 13 0 Flagella accessory protein C (FlaC) CLZ PF16526.5 gi|284164894|ref|YP_003403173.1| - 2.3e-06 27.9 72.4 0.8 10.1 0.2 14.8 3 3 13 17 17 15 3 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Golgin_A5 PF09787.9 gi|284164894|ref|YP_003403173.1| - 6.1e-06 25.9 62.2 0.023 14.2 8.0 6.5 1 1 3 6 6 6 3 Golgin subfamily A member 5 YlqD PF11068.8 gi|284164894|ref|YP_003403173.1| - 1.3e-05 25.6 8.6 2.4 8.5 0.1 7.1 4 1 3 8 8 6 0 YlqD protein Prefoldin_2 PF01920.20 gi|284164894|ref|YP_003403173.1| - 2.4e-05 24.2 47.8 0.74 9.8 2.5 14.6 1 1 10 14 14 14 1 Prefoldin subunit Fez1 PF06818.15 gi|284164894|ref|YP_003403173.1| - 3.7e-05 24.3 52.2 2 8.8 5.6 6.8 1 1 3 5 5 4 0 Fez1 DUF148 PF02520.17 gi|284164894|ref|YP_003403173.1| - 5e-05 23.4 9.0 0.48 10.6 0.0 6.9 4 2 2 7 7 5 1 Domain of unknown function DUF148 GAS PF13851.6 gi|284164894|ref|YP_003403173.1| - 5.1e-05 22.7 37.3 0.24 10.7 0.3 8.1 2 1 6 9 9 8 3 Growth-arrest specific micro-tubule binding DUF948 PF06103.11 gi|284164894|ref|YP_003403173.1| - 5.4e-05 23.4 57.5 0.95 9.8 0.9 11.6 3 1 6 10 10 10 2 Bacterial protein of unknown function (DUF948) CorA PF01544.18 gi|284164894|ref|YP_003403173.1| - 9.5e-05 21.8 79.5 0.0028 17.0 5.3 7.6 2 1 4 8 8 8 2 CorA-like Mg2+ transporter protein FapA PF03961.13 gi|284164894|ref|YP_003403173.1| - 0.00012 20.8 13.2 0.14 10.7 1.4 6.2 1 1 7 10 10 10 1 Flagellar Assembly Protein A TMPIT PF07851.13 gi|284164894|ref|YP_003403173.1| - 0.00019 20.8 8.1 4.9 6.3 0.1 6.1 2 1 5 7 7 7 0 TMPIT-like protein DUF1640 PF07798.11 gi|284164894|ref|YP_003403173.1| - 0.00034 20.7 1.5 0.00034 20.7 1.5 6.7 2 1 2 4 4 2 1 Protein of unknown function (DUF1640) SKA2 PF16740.5 gi|284164894|ref|YP_003403173.1| - 0.00049 19.8 28.0 1.7 8.5 1.1 9.5 2 1 8 10 10 10 1 Spindle and kinetochore-associated protein 2 Dynamitin PF04912.14 gi|284164894|ref|YP_003403173.1| - 0.00049 19.5 63.6 0.0086 15.4 19.3 5.7 1 1 3 5 5 5 2 Dynamitin MscS_porin PF12795.7 gi|284164894|ref|YP_003403173.1| - 0.00086 18.9 74.5 0.1 12.1 11.7 7.5 2 2 5 7 7 7 3 Mechanosensitive ion channel porin domain UPF0242 PF06785.11 gi|284164894|ref|YP_003403173.1| - 0.00091 19.4 48.3 1.2 9.2 0.3 7.4 2 1 4 7 7 7 2 Uncharacterised protein family (UPF0242) N-terminus DUF2730 PF10805.8 gi|284164894|ref|YP_003403173.1| - 0.0012 18.9 42.0 1.5 8.9 1.0 10.6 2 2 10 14 14 14 2 Protein of unknown function (DUF2730) Atg14 PF10186.9 gi|284164894|ref|YP_003403173.1| - 0.0014 17.8 14.2 3 6.9 0.2 5.9 1 1 5 7 7 7 0 Vacuolar sorting 38 and autophagy-related subunit 14 Allexi_40kDa PF05549.11 gi|284164894|ref|YP_003403173.1| - 0.0015 18.1 24.0 4.3 6.8 0.2 7.5 1 1 10 11 11 11 0 Allexivirus 40kDa protein ADIP PF11559.8 gi|284164894|ref|YP_003403173.1| - 0.0018 18.3 40.3 0.037 14.1 0.2 9.1 1 1 7 11 11 10 1 Afadin- and alpha -actinin-Binding DUF4407 PF14362.6 gi|284164894|ref|YP_003403173.1| - 0.002 17.6 82.1 1 8.7 12.1 7.5 1 1 4 5 5 4 1 Domain of unknown function (DUF4407) SKA1 PF07160.12 gi|284164894|ref|YP_003403173.1| - 0.0022 17.9 8.1 59 3.4 0.0 7.0 3 1 4 8 8 7 0 Spindle and kinetochore-associated protein 1 Fmp27_WPPW PF10359.9 gi|284164894|ref|YP_003403173.1| - 0.0027 16.6 31.7 0.11 11.3 0.2 6.7 1 1 4 7 7 7 1 RNA pol II promoter Fmp27 protein domain OmpH PF03938.14 gi|284164894|ref|YP_003403173.1| - 0.0039 17.5 32.0 2.8 8.3 2.4 8.3 2 1 5 8 8 8 0 Outer membrane protein (OmpH-like) Not3 PF04065.15 gi|284164894|ref|YP_003403173.1| - 0.0041 16.6 34.0 1.8 8.0 0.2 7.4 1 1 7 9 9 9 1 Not1 N-terminal domain, CCR4-Not complex component ALP_N PF17989.1 gi|284164894|ref|YP_003403173.1| - 0.0042 17.3 0.0 0.011 16.0 0.0 1.7 1 0 0 1 1 1 1 Actin like proteins N terminal domain DUF5082 PF16888.5 gi|284164894|ref|YP_003403173.1| - 0.0043 17.3 33.8 2.4 8.5 0.3 10.4 2 2 6 9 9 9 0 Domain of unknown function (DUF5082) Fzo_mitofusin PF04799.13 gi|284164894|ref|YP_003403173.1| - 0.0044 16.6 23.9 3.4 7.2 0.0 9.3 4 2 5 10 10 9 0 fzo-like conserved region DUF4795 PF16043.5 gi|284164894|ref|YP_003403173.1| - 0.0052 16.4 5.3 0.0052 16.4 5.3 6.3 1 1 4 5 5 5 1 Domain of unknown function (DUF4795) COG2 PF06148.11 gi|284164894|ref|YP_003403173.1| - 0.0054 16.8 49.8 1.2 9.2 0.3 10.6 1 1 9 11 11 11 1 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.16 gi|284164894|ref|YP_003403173.1| - 0.0064 15.7 25.8 3.4 6.7 0.3 9.6 2 2 9 12 12 12 0 RmuC family Muted PF14942.6 gi|284164894|ref|YP_003403173.1| - 0.0066 16.8 31.1 0.21 11.9 0.0 8.3 2 2 8 11 11 11 1 Organelle biogenesis, Muted-like protein CdvA PF18822.1 gi|284164894|ref|YP_003403173.1| - 0.0069 16.2 48.1 3.3 7.5 0.8 11.9 5 4 7 13 13 13 0 CdvA-like coiled-coil domain Sec34 PF04136.15 gi|284164894|ref|YP_003403173.1| - 0.011 15.6 32.9 0.37 10.7 0.3 9.8 4 3 7 12 12 11 0 Sec34-like family Leu_zip PF15294.6 gi|284164894|ref|YP_003403173.1| - 0.011 15.2 42.5 0.8 9.2 0.5 6.0 1 1 5 6 6 6 0 Leucine zipper Syntaxin PF00804.25 gi|284164894|ref|YP_003403173.1| - 0.012 15.4 19.1 0.15 11.7 0.3 7.0 1 1 7 9 9 8 0 Syntaxin FAP206 PF12018.8 gi|284164894|ref|YP_003403173.1| - 0.012 15.1 2.9 5.9 6.3 0.0 4.2 4 2 0 4 4 2 0 Domain of unknown function XhlA PF10779.9 gi|284164894|ref|YP_003403173.1| - 0.015 15.5 81.7 0.041 14.1 0.7 16.0 5 5 11 19 19 17 0 Haemolysin XhlA RasGAP_C PF03836.15 gi|284164894|ref|YP_003403173.1| - 0.022 14.9 0.7 2.4 8.3 0.0 4.4 2 1 2 4 4 3 0 RasGAP C-terminus Mod_r PF07200.13 gi|284164894|ref|YP_003403173.1| - 0.025 14.7 48.7 3.3 7.8 1.6 8.4 1 1 6 7 7 7 0 Modifier of rudimentary (Mod(r)) protein SlyX PF04102.12 gi|284164894|ref|YP_003403173.1| - 0.025 15.2 0.8 0.025 15.2 0.8 14.7 2 1 14 19 19 17 0 SlyX Nup88 PF10168.9 gi|284164894|ref|YP_003403173.1| - 0.029 12.2 10.4 0.087 10.6 1.2 3.5 2 2 2 4 4 4 0 Nuclear pore component DUF4201 PF13870.6 gi|284164894|ref|YP_003403173.1| - 0.045 13.5 17.9 0.082 12.6 0.5 6.6 1 1 4 7 7 7 0 Domain of unknown function (DUF4201) Bacillus_HBL PF05791.11 gi|284164894|ref|YP_003403173.1| - 0.056 13.3 26.3 4.1 7.2 0.4 7.3 2 2 7 9 9 9 0 Bacillus haemolytic enterotoxin (HBL) ApoLp-III PF07464.11 gi|284164894|ref|YP_003403173.1| - 0.072 13.2 22.6 6 7.0 0.4 7.6 1 1 6 8 8 7 0 Apolipophorin-III precursor (apoLp-III) Tropomyosin_1 PF12718.7 gi|284164894|ref|YP_003403173.1| - 0.074 13.2 110.0 0.097 12.8 12.3 8.6 1 1 7 9 9 8 0 Tropomyosin like CENP-K PF11802.8 gi|284164894|ref|YP_003403173.1| - 0.084 12.4 6.7 1.7 8.2 1.9 4.0 1 1 3 4 4 4 0 Centromere-associated protein K MbeD_MobD PF04899.12 gi|284164894|ref|YP_003403173.1| - 0.086 13.0 11.2 0.43 10.7 0.1 6.6 5 3 1 7 7 4 0 MbeD/MobD like HSBP1 PF06825.12 gi|284164894|ref|YP_003403173.1| - 0.11 12.4 0.1 0.11 12.4 0.1 12.1 10 4 4 14 14 10 0 Heat shock factor binding protein 1 DHC_N1 PF08385.12 gi|284164894|ref|YP_003403173.1| - 0.16 10.5 3.5 15 4.1 0.1 3.7 1 1 3 4 4 4 0 Dynein heavy chain, N-terminal region 1 FH2 PF02181.23 gi|284164894|ref|YP_003403173.1| - 0.18 10.9 26.9 0.38 9.8 0.1 7.0 3 2 5 9 9 9 0 Formin Homology 2 Domain MAP65_ASE1 PF03999.12 gi|284164894|ref|YP_003403173.1| - 0.19 10.4 26.5 0.85 8.2 8.3 3.9 1 1 2 3 3 3 0 Microtubule associated protein (MAP65/ASE1 family) ABC_tran_CTD PF16326.5 gi|284164894|ref|YP_003403173.1| - 0.35 11.2 108.3 1.1 9.5 4.2 13.2 4 3 6 13 13 12 0 ABC transporter C-terminal domain RPW8 PF05659.11 gi|284164894|ref|YP_003403173.1| - 0.4 10.4 15.1 12 5.6 0.1 7.2 6 2 2 8 8 7 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 WASH_WAHD PF11945.8 gi|284164894|ref|YP_003403173.1| - 0.47 9.9 1.6 12 5.3 0.2 3.6 2 1 1 3 3 3 0 WAHD domain of WASH complex DUF3782 PF12644.7 gi|284164894|ref|YP_003403173.1| - 0.52 10.5 10.6 8.4 6.6 0.0 6.7 5 2 1 7 7 4 0 Protein of unknown function (DUF3782) DUF4618 PF15397.6 gi|284164894|ref|YP_003403173.1| - 0.54 9.6 30.0 3.1 7.1 6.2 7.7 1 1 3 6 6 6 0 Domain of unknown function (DUF4618) Seryl_tRNA_N PF02403.22 gi|284164894|ref|YP_003403173.1| - 0.55 10.5 57.0 0.15 12.3 2.7 10.4 2 2 8 13 13 12 0 Seryl-tRNA synthetase N-terminal domain MCPsignal PF00015.21 gi|284164894|ref|YP_003403173.1| - 0.6 9.9 36.4 1.4 8.7 0.7 8.2 3 2 7 11 11 10 0 Methyl-accepting chemotaxis protein (MCP) signalling domain YabA PF06156.13 gi|284164894|ref|YP_003403173.1| - 0.63 10.7 26.4 17 6.2 0.4 8.5 3 2 5 9 9 7 0 Initiation control protein YabA TolA_bind_tri PF16331.5 gi|284164894|ref|YP_003403173.1| - 1 9.5 49.6 0.59 10.2 1.6 9.9 7 4 2 9 9 9 0 TolA binding protein trimerisation WXG100 PF06013.12 gi|284164894|ref|YP_003403173.1| - 1 9.6 35.5 0.45 10.8 0.2 11.4 4 2 13 17 17 16 0 Proteins of 100 residues with WXG Vac_Fusion PF02346.16 gi|284164894|ref|YP_003403173.1| - 1.2 8.8 12.0 12 5.6 0.0 6.9 8 0 0 8 8 5 0 Chordopoxvirus multifunctional envelope protein A27 Tropomyosin PF00261.20 gi|284164894|ref|YP_003403173.1| - 1.3 8.3 110.6 0.011 15.1 17.7 6.3 2 1 2 5 5 4 0 Tropomyosin DUF2913 PF11140.8 gi|284164894|ref|YP_003403173.1| - 1.4 8.6 7.7 4.6 6.9 0.2 4.3 4 0 0 4 4 3 0 Protein of unknown function (DUF2913) DASH_Dad2 PF08654.10 gi|284164894|ref|YP_003403173.1| - 1.6 9.2 29.4 9.4 6.7 0.1 9.8 5 3 6 12 12 7 0 DASH complex subunit Dad2 DUF713 PF05218.14 gi|284164894|ref|YP_003403173.1| - 2 8.1 5.5 74 3.0 0.0 4.7 3 2 1 5 5 4 0 Protein of unknown function (DUF713) SAPI PF16560.5 gi|284164894|ref|YP_003403173.1| - 2.2 7.8 5.8 0.8 9.2 1.3 2.5 2 0 0 2 2 2 0 Putative mobile pathogenicity island DUF3037 PF11236.8 gi|284164894|ref|YP_003403173.1| - 4.4 7.8 24.9 21 5.5 0.1 7.7 4 1 4 8 8 7 0 Protein of unknown function (DUF3037) FAM76 PF16046.5 gi|284164894|ref|YP_003403173.1| - 5.7 6.2 10.7 24 4.1 0.5 4.4 3 2 2 5 5 4 0 FAM76 protein Lectin_N PF03954.14 gi|284164894|ref|YP_003403173.1| - 6 6.6 23.5 41 3.9 1.7 8.0 4 2 2 7 7 7 0 Hepatic lectin, N-terminal domain T3SS_basalb_I PF17001.5 gi|284164894|ref|YP_003403173.1| - 8.1 7.1 5.9 67 4.2 0.2 5.2 4 2 1 5 5 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI DUF724 PF05266.14 gi|284164894|ref|YP_003403173.1| - 8.2 6.2 28.0 2.6 7.8 0.2 6.6 1 1 3 6 6 6 0 Protein of unknown function (DUF724) LXG PF04740.12 gi|284164894|ref|YP_003403173.1| - 9.3 5.9 38.9 0.25 11.0 0.6 7.9 2 1 5 7 7 7 0 LXG domain of WXG superfamily Zn-ribbon_8 PF09723.10 gi|284164895|ref|YP_003403174.1| - 0.00044 20.3 2.9 0.0007 19.7 2.9 1.3 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284164895|ref|YP_003403174.1| - 0.0088 15.4 1.5 0.029 13.8 1.5 1.8 1 1 0 1 1 1 1 zinc-ribbon domain TFIIS_C PF01096.18 gi|284164895|ref|YP_003403174.1| - 0.01 15.7 0.9 0.36 10.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TF_Zn_Ribbon PF08271.12 gi|284164895|ref|YP_003403174.1| - 0.02 14.4 0.9 0.047 13.2 0.9 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|284164895|ref|YP_003403174.1| - 0.086 12.8 4.4 0.27 11.2 4.4 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF2387 PF09526.10 gi|284164895|ref|YP_003403174.1| - 0.11 12.7 1.7 0.12 12.5 1.7 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Rubredoxin_2 PF18073.1 gi|284164895|ref|YP_003403174.1| - 0.18 11.6 4.1 0.99 9.2 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain MFS_1 PF07690.16 gi|284164896|ref|YP_003403175.1| - 1.3e-44 152.6 81.9 4.4e-38 131.1 50.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284164896|ref|YP_003403175.1| - 0.00015 20.7 18.4 0.00025 20.0 4.1 2.8 1 1 1 3 3 3 3 MFS_1 like family LacY_symp PF01306.19 gi|284164896|ref|YP_003403175.1| - 0.0018 17.1 0.2 0.0018 17.1 0.2 2.9 3 0 0 3 3 3 1 LacY proton/sugar symporter OATP PF03137.20 gi|284164896|ref|YP_003403175.1| - 0.0025 16.2 0.4 0.0025 16.2 0.4 2.4 2 1 0 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family Nuc_H_symport PF03825.16 gi|284164896|ref|YP_003403175.1| - 0.086 11.8 18.5 0.12 11.4 18.5 1.2 1 0 0 1 1 1 0 Nucleoside H+ symporter MbeD_MobD PF04899.12 gi|284164897|ref|YP_003403176.1| - 0.19 11.9 0.7 0.38 10.9 0.7 1.5 1 0 0 1 1 1 0 MbeD/MobD like SHOCT PF09851.9 gi|284164899|ref|YP_003403178.1| - 9.5e-09 34.7 0.3 1.6e-08 34.0 0.3 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|284164899|ref|YP_003403178.1| - 0.00035 20.6 0.5 0.00035 20.6 0.5 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF1707) DUF4191 PF13829.6 gi|284164899|ref|YP_003403178.1| - 0.0006 19.2 0.1 0.0008 18.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4191) GvpG PF05120.12 gi|284164899|ref|YP_003403178.1| - 0.036 14.1 2.3 0.049 13.6 2.3 1.3 1 0 0 1 1 1 0 Gas vesicle protein G FixQ PF05545.11 gi|284164899|ref|YP_003403178.1| - 0.052 13.5 0.2 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ CcmH PF03918.14 gi|284164899|ref|YP_003403178.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein TAFH PF07531.14 gi|284164899|ref|YP_003403178.1| - 0.18 11.9 0.0 0.27 11.3 0.0 1.2 1 0 0 1 1 1 0 NHR1 homology to TAF DUF4083 PF13314.6 gi|284164899|ref|YP_003403178.1| - 0.19 11.7 1.3 4.4 7.3 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4083) Hydrolase_like PF13242.6 gi|284164900|ref|YP_003403179.1| - 3.6e-23 81.4 0.3 8e-23 80.3 0.3 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|284164900|ref|YP_003403179.1| - 1.2e-21 76.7 0.0 3.6e-21 75.2 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284164900|ref|YP_003403179.1| - 1.4e-07 32.0 2.5 0.00027 21.3 0.3 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284164900|ref|YP_003403179.1| - 1.1e-06 28.9 0.1 3.4e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|284164900|ref|YP_003403179.1| - 0.005 16.5 0.1 0.015 14.9 0.1 1.7 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|284164900|ref|YP_003403179.1| - 0.16 11.7 0.1 8 6.1 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Rick_17kDa_Anti PF05433.15 gi|284164901|ref|YP_003403180.1| - 6.4e-07 29.1 11.8 8.4e-07 28.7 11.8 1.1 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|284164901|ref|YP_003403180.1| - 4.6e-06 26.3 17.3 6.3e-06 25.8 17.3 1.1 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|284164901|ref|YP_003403180.1| - 0.00048 20.1 30.4 0.0046 16.9 4.5 1.9 1 1 1 2 2 2 2 Glycine zipper FAD_binding_5 PF00941.21 gi|284164901|ref|YP_003403180.1| - 0.0094 15.7 0.7 0.01 15.6 0.7 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase DUF3482 PF11981.8 gi|284164901|ref|YP_003403180.1| - 0.014 14.8 2.9 0.015 14.7 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Gly-zipper_OmpA PF13436.6 gi|284164901|ref|YP_003403180.1| - 0.066 13.0 20.4 0.19 11.6 20.4 1.7 1 1 0 1 1 1 0 Glycine-zipper domain DUF4514 PF14986.6 gi|284164901|ref|YP_003403180.1| - 0.096 12.7 0.3 0.096 12.7 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) TraT PF05818.12 gi|284164901|ref|YP_003403180.1| - 0.24 11.1 2.3 0.27 10.9 2.3 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Romo1 PF10247.9 gi|284164901|ref|YP_003403180.1| - 2.5 8.5 7.6 2.6 8.5 2.4 2.0 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Bacteriocin_IIc PF10439.9 gi|284164901|ref|YP_003403180.1| - 7.1 6.8 12.9 11 6.2 12.9 1.4 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DUF1269 PF06897.12 gi|284164901|ref|YP_003403180.1| - 9.9 6.5 9.2 6.3 7.2 1.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) 4HBT PF03061.22 gi|284164902|ref|YP_003403181.1| - 1.1e-16 60.9 0.4 1.6e-16 60.4 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily TraB PF01963.17 gi|284164903|ref|YP_003403182.1| - 4.8e-28 98.8 0.1 8.7e-17 61.9 0.0 2.1 2 0 0 2 2 2 2 TraB family Peptidase_M50 PF02163.22 gi|284164904|ref|YP_003403183.1| - 5.1e-05 22.7 17.3 0.0049 16.2 0.8 3.1 1 1 1 2 2 2 2 Peptidase family M50 DUF3021 PF11457.8 gi|284164904|ref|YP_003403183.1| - 2.4 8.5 8.1 0.89 9.9 4.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3021) AIRS_C PF02769.22 gi|284164905|ref|YP_003403184.1| - 8.6e-23 81.2 0.0 1.5e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|284164905|ref|YP_003403184.1| - 5.4e-13 49.4 0.8 1.1e-12 48.4 0.8 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Usp PF00582.26 gi|284164906|ref|YP_003403185.1| - 3.3e-16 60.1 0.2 4.3e-16 59.7 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|284164906|ref|YP_003403185.1| - 0.024 14.5 0.6 0.067 13.1 0.0 1.8 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Ferritin PF00210.24 gi|284164908|ref|YP_003403187.1| - 1.9e-32 112.2 1.8 2.2e-32 111.9 1.8 1.1 1 0 0 1 1 1 1 Ferritin-like domain Aldedh PF00171.22 gi|284164909|ref|YP_003403188.1| - 1.5e-141 472.1 1.1 1.7e-141 471.9 1.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|284164909|ref|YP_003403188.1| - 0.003 17.0 0.0 0.48 9.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1487) PfkB PF00294.24 gi|284164910|ref|YP_003403189.1| - 3.8e-60 203.7 0.0 4.7e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase VirE_N PF08800.10 gi|284164910|ref|YP_003403189.1| - 0.023 14.8 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 VirE N-terminal domain Virul_fac_BrkB PF03631.15 gi|284164911|ref|YP_003403190.1| - 5e-45 154.1 23.9 6.4e-45 153.8 23.9 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ERM PF00769.19 gi|284164911|ref|YP_003403190.1| - 0.00037 20.4 12.5 0.00049 20.0 12.5 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family UPF0242 PF06785.11 gi|284164911|ref|YP_003403190.1| - 0.0017 18.5 0.0 0.0051 16.9 0.0 1.9 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus bZIP_Maf PF03131.17 gi|284164911|ref|YP_003403190.1| - 0.0021 18.5 9.4 0.0033 17.9 9.4 1.2 1 0 0 1 1 1 1 bZIP Maf transcription factor DUF812 PF05667.11 gi|284164911|ref|YP_003403190.1| - 0.0046 15.9 2.7 0.006 15.5 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF812) HALZ PF02183.18 gi|284164911|ref|YP_003403190.1| - 0.0082 16.3 9.8 0.032 14.4 2.1 2.3 2 0 0 2 2 2 1 Homeobox associated leucine zipper CENP-F_leu_zip PF10473.9 gi|284164911|ref|YP_003403190.1| - 0.011 15.7 13.4 0.029 14.4 13.5 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 JIP_LZII PF16471.5 gi|284164911|ref|YP_003403190.1| - 0.016 15.4 3.1 0.016 15.4 3.1 2.3 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II CAAD PF14159.6 gi|284164911|ref|YP_003403190.1| - 0.017 15.0 0.8 0.017 15.0 0.8 3.6 5 0 0 5 5 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase ADIP PF11559.8 gi|284164911|ref|YP_003403190.1| - 0.028 14.5 4.8 0.028 14.5 4.8 1.6 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Nnf1 PF03980.14 gi|284164911|ref|YP_003403190.1| - 0.029 14.7 11.7 0.18 12.2 3.5 2.2 2 0 0 2 2 2 0 Nnf1 FlaC_arch PF05377.11 gi|284164911|ref|YP_003403190.1| - 0.034 14.5 2.4 0.034 14.5 2.4 2.3 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|284164911|ref|YP_003403190.1| - 0.041 14.2 2.5 0.072 13.4 2.5 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2205 PF10224.9 gi|284164911|ref|YP_003403190.1| - 0.043 13.8 6.5 0.49 10.4 5.6 2.2 1 1 1 2 2 2 0 Short coiled-coil protein KASH_CCD PF14662.6 gi|284164911|ref|YP_003403190.1| - 0.047 13.5 10.4 0.067 13.0 10.4 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH HIP1_clath_bdg PF16515.5 gi|284164911|ref|YP_003403190.1| - 0.052 14.2 6.3 0.11 13.2 6.3 1.5 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 LPP PF04728.13 gi|284164911|ref|YP_003403190.1| - 0.056 13.8 1.2 0.45 10.9 0.1 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Spectrin PF00435.21 gi|284164911|ref|YP_003403190.1| - 0.063 13.8 8.8 0.1 13.1 8.8 1.3 1 0 0 1 1 1 0 Spectrin repeat ATG16 PF08614.11 gi|284164911|ref|YP_003403190.1| - 0.067 13.4 12.6 0.091 13.0 12.6 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) V_ATPase_I PF01496.19 gi|284164911|ref|YP_003403190.1| - 0.09 10.7 1.0 0.13 10.1 1.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family APC_N_CC PF16689.5 gi|284164911|ref|YP_003403190.1| - 0.1 12.7 12.6 1.6 8.9 3.2 2.3 1 1 1 2 2 2 0 Coiled-coil N-terminus of APC, dimerisation domain HAUS-augmin3 PF14932.6 gi|284164911|ref|YP_003403190.1| - 0.12 11.9 4.2 0.17 11.5 4.2 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Swi5 PF07061.11 gi|284164911|ref|YP_003403190.1| - 0.14 12.2 3.3 0.6 10.2 0.2 2.3 1 1 1 2 2 2 0 Swi5 Nup88 PF10168.9 gi|284164911|ref|YP_003403190.1| - 0.15 9.9 5.5 0.19 9.5 5.5 1.0 1 0 0 1 1 1 0 Nuclear pore component Prefoldin_2 PF01920.20 gi|284164911|ref|YP_003403190.1| - 0.16 12.0 10.7 0.31 11.0 3.3 2.3 1 1 1 2 2 2 0 Prefoldin subunit Tup_N PF08581.10 gi|284164911|ref|YP_003403190.1| - 0.16 12.3 10.0 0.24 11.7 10.0 1.2 1 0 0 1 1 1 0 Tup N-terminal bZIP_1 PF00170.21 gi|284164911|ref|YP_003403190.1| - 0.17 12.0 12.0 3.5 7.8 10.6 2.3 1 1 1 2 2 2 0 bZIP transcription factor DivIC PF04977.15 gi|284164911|ref|YP_003403190.1| - 0.23 11.3 13.7 0.053 13.3 5.2 2.8 1 1 1 2 2 2 0 Septum formation initiator Atg14 PF10186.9 gi|284164911|ref|YP_003403190.1| - 0.23 10.5 3.7 0.32 10.0 3.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 ZapB PF06005.12 gi|284164911|ref|YP_003403190.1| - 0.27 11.7 17.9 0.075 13.5 4.4 2.3 1 1 1 2 2 2 0 Cell division protein ZapB FapA PF03961.13 gi|284164911|ref|YP_003403190.1| - 0.37 9.3 0.9 0.55 8.8 0.9 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A CENP-Q PF13094.6 gi|284164911|ref|YP_003403190.1| - 0.38 10.9 10.1 0.59 10.3 10.1 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Tropomyosin_1 PF12718.7 gi|284164911|ref|YP_003403190.1| - 0.38 10.9 14.0 0.55 10.4 14.0 1.2 1 0 0 1 1 1 0 Tropomyosin like Spc7 PF08317.11 gi|284164911|ref|YP_003403190.1| - 0.44 9.4 5.6 0.65 8.8 5.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein OmpH PF03938.14 gi|284164911|ref|YP_003403190.1| - 0.68 10.3 4.5 1.2 9.5 4.5 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF3450 PF11932.8 gi|284164911|ref|YP_003403190.1| - 0.94 8.7 10.5 1.2 8.4 7.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Cnn_1N PF07989.11 gi|284164911|ref|YP_003403190.1| - 1 9.6 10.8 2.1 8.6 4.4 2.2 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 CLZ PF16526.5 gi|284164911|ref|YP_003403190.1| - 1 9.7 9.0 2.1 8.8 8.0 2.0 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels APG6_N PF17675.1 gi|284164911|ref|YP_003403190.1| - 1.5 9.4 21.3 5.7 7.5 18.9 2.0 1 1 1 2 2 2 0 Apg6 coiled-coil region GAS PF13851.6 gi|284164911|ref|YP_003403190.1| - 1.7 7.9 10.3 4 6.7 10.3 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Ax_dynein_light PF10211.9 gi|284164911|ref|YP_003403190.1| - 2.6 7.9 10.9 2.4 8.1 7.2 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain Jnk-SapK_ap_N PF09744.9 gi|284164911|ref|YP_003403190.1| - 2.6 8.2 17.1 6.6 6.9 17.1 1.5 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 YabA PF06156.13 gi|284164911|ref|YP_003403190.1| - 3.3 8.4 6.0 10 6.8 6.0 1.8 1 1 0 1 1 1 0 Initiation control protein YabA SHE3 PF17078.5 gi|284164911|ref|YP_003403190.1| - 5.5 6.6 9.8 11 5.7 9.8 1.4 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF3086 PF11285.8 gi|284164911|ref|YP_003403190.1| - 5.6 6.0 8.4 4.9 6.2 2.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF4164 PF13747.6 gi|284164911|ref|YP_003403190.1| - 6.3 7.1 22.4 6.5 7.1 9.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Spc24 PF08286.11 gi|284164911|ref|YP_003403190.1| - 7.1 6.9 10.3 1.4 9.2 3.5 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Fungal_TACC PF12709.7 gi|284164911|ref|YP_003403190.1| - 7.5 7.1 6.1 23 5.5 0.8 2.2 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins PI3K_P85_iSH2 PF16454.5 gi|284164911|ref|YP_003403190.1| - 7.8 6.1 10.0 4.6 6.8 1.8 2.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ZnuA PF01297.17 gi|284164913|ref|YP_003403192.1| - 2.2e-38 132.1 0.0 2.4e-38 132.0 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Maf1 PF09174.10 gi|284164913|ref|YP_003403192.1| - 0.17 12.0 0.0 0.25 11.5 0.0 1.2 1 0 0 1 1 1 0 Maf1 regulator TAT_signal PF10518.9 gi|284164913|ref|YP_003403192.1| - 0.33 10.9 5.4 0.63 10.0 5.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.22 gi|284164913|ref|YP_003403192.1| - 4 6.6 4.3 6.2 5.9 4.3 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter ABC_tran PF00005.27 gi|284164914|ref|YP_003403193.1| - 7.8e-31 107.4 0.0 1.1e-30 107.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164914|ref|YP_003403193.1| - 1.3e-11 44.8 0.7 0.00013 21.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284164914|ref|YP_003403193.1| - 0.00035 20.1 0.3 0.0041 16.6 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284164914|ref|YP_003403193.1| - 0.00063 19.4 0.1 0.0013 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Peripla_BP_4 PF13407.6 gi|284164914|ref|YP_003403193.1| - 0.00093 18.8 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain AAA_15 PF13175.6 gi|284164914|ref|YP_003403193.1| - 0.0026 17.5 0.0 0.0047 16.7 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284164914|ref|YP_003403193.1| - 0.0032 17.7 0.2 0.016 15.5 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|284164914|ref|YP_003403193.1| - 0.0048 17.4 0.0 0.006 17.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|284164914|ref|YP_003403193.1| - 0.007 15.5 0.1 0.028 13.5 0.0 1.9 2 0 0 2 2 2 1 Type II/IV secretion system protein SbcCD_C PF13558.6 gi|284164914|ref|YP_003403193.1| - 0.0073 16.5 0.8 0.17 12.2 0.3 2.7 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|284164914|ref|YP_003403193.1| - 0.012 16.1 0.7 0.037 14.4 0.7 1.8 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|284164914|ref|YP_003403193.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|284164914|ref|YP_003403193.1| - 0.016 15.4 0.1 0.065 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|284164914|ref|YP_003403193.1| - 0.019 14.9 0.0 0.075 12.9 0.0 1.9 1 1 1 2 2 2 0 NTPase MobB PF03205.14 gi|284164914|ref|YP_003403193.1| - 0.031 14.2 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|284164914|ref|YP_003403193.1| - 0.098 12.2 0.1 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.9 gi|284164914|ref|YP_003403193.1| - 0.1 11.4 0.4 1.1 8.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|284164914|ref|YP_003403193.1| - 0.74 9.3 3.8 1.7 8.2 0.0 2.7 3 0 0 3 3 3 0 AAA domain ABC-3 PF00950.17 gi|284164915|ref|YP_003403194.1| - 2.1e-59 201.1 34.1 2.1e-59 201.1 34.1 1.3 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.18 gi|284164915|ref|YP_003403194.1| - 4.9e-05 22.5 33.9 4.9e-05 22.5 33.9 2.3 2 1 0 2 2 2 1 FecCD transport family OATP PF03137.20 gi|284164916|ref|YP_003403195.1| - 0.0089 14.4 3.0 0.54 8.5 0.1 2.2 2 0 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family MASE2 PF05230.11 gi|284164916|ref|YP_003403195.1| - 0.058 13.5 0.2 0.058 13.5 0.2 2.3 2 1 1 3 3 3 0 MASE2 domain ATP-grasp_5 PF13549.6 gi|284164917|ref|YP_003403196.1| - 6.4e-74 248.2 0.1 1e-73 247.5 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|284164917|ref|YP_003403196.1| - 1.4e-52 177.1 0.6 4.8e-52 175.4 0.2 2.1 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|284164917|ref|YP_003403196.1| - 3.3e-24 85.6 1.0 1.1e-22 80.7 0.1 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|284164917|ref|YP_003403196.1| - 4.7e-11 43.2 0.2 1.9e-10 41.3 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|284164917|ref|YP_003403196.1| - 2.4e-05 24.0 0.0 8.4e-05 22.2 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain AAA_26 PF13500.6 gi|284164918|ref|YP_003403197.1| - 4.6e-36 124.5 0.0 6.5e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|284164918|ref|YP_003403197.1| - 8.9e-29 99.4 0.4 5.7e-28 96.8 0.0 2.5 2 1 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|284164918|ref|YP_003403197.1| - 1.9e-06 27.9 0.0 4e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GYD PF08734.11 gi|284164918|ref|YP_003403197.1| - 0.014 15.3 0.1 0.049 13.6 0.1 2.0 1 0 0 1 1 1 0 GYD domain Hpr_kinase_N PF02603.16 gi|284164918|ref|YP_003403197.1| - 0.12 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase N terminus CcmD PF04995.14 gi|284164919|ref|YP_003403198.1| - 1.4 9.0 8.5 0.13 12.3 2.0 2.2 1 1 1 2 2 2 0 Heme exporter protein D (CcmD) PRC PF05239.16 gi|284164920|ref|YP_003403199.1| - 5.3e-12 45.7 0.9 6.8e-12 45.3 0.9 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|284164920|ref|YP_003403199.1| - 0.027 14.7 0.2 0.11 12.8 0.2 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) RcnB PF11776.8 gi|284164920|ref|YP_003403199.1| - 0.054 13.5 0.3 0.089 12.9 0.3 1.4 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator TrkA_N PF02254.18 gi|284164921|ref|YP_003403200.1| - 2.1e-19 69.9 2.3 3.5e-19 69.2 1.3 2.0 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.20 gi|284164921|ref|YP_003403200.1| - 2e-14 53.6 1.1 4.9e-13 49.2 0.4 2.3 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|284164921|ref|YP_003403200.1| - 3.7e-08 33.8 0.1 1.6e-07 31.8 0.1 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|284164921|ref|YP_003403200.1| - 1.2e-07 32.0 0.2 4.1e-07 30.3 0.2 2.1 2 0 0 2 2 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|284164921|ref|YP_003403200.1| - 7.2e-07 29.0 0.0 2e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DHHA1 PF02272.19 gi|284164921|ref|YP_003403200.1| - 2.6e-06 27.9 0.2 1.5e-05 25.4 0.0 2.3 2 1 0 2 2 2 1 DHHA1 domain NAD_binding_10 PF13460.6 gi|284164921|ref|YP_003403200.1| - 4.3e-06 26.8 1.8 1.1e-05 25.4 1.8 1.7 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|284164921|ref|YP_003403200.1| - 4.3e-05 23.9 0.3 0.00014 22.3 0.3 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|284164921|ref|YP_003403200.1| - 0.00011 22.4 0.0 0.00024 21.3 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|284164921|ref|YP_003403200.1| - 0.00011 21.8 0.0 0.00027 20.6 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|284164921|ref|YP_003403200.1| - 0.00018 21.6 0.0 0.00044 20.3 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 gi|284164921|ref|YP_003403200.1| - 0.00027 20.5 0.1 0.00062 19.3 0.1 1.6 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family IlvN PF07991.12 gi|284164921|ref|YP_003403200.1| - 0.00038 20.1 0.1 0.00073 19.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_binding_3 PF01494.19 gi|284164921|ref|YP_003403200.1| - 0.00072 18.9 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|284164921|ref|YP_003403200.1| - 0.0041 16.5 0.0 0.01 15.2 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|284164921|ref|YP_003403200.1| - 0.0049 16.8 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|284164921|ref|YP_003403200.1| - 0.0084 15.6 0.5 0.025 14.0 0.1 2.1 3 0 0 3 3 3 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|284164921|ref|YP_003403200.1| - 0.0096 15.9 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|284164921|ref|YP_003403200.1| - 0.011 15.2 2.6 0.023 14.3 0.2 2.5 3 0 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase AlaDh_PNT_C PF01262.21 gi|284164921|ref|YP_003403200.1| - 0.014 14.7 0.7 0.032 13.5 0.2 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|284164921|ref|YP_003403200.1| - 0.04 13.5 0.1 0.097 12.2 0.0 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|284164921|ref|YP_003403200.1| - 0.054 14.0 0.9 0.22 12.0 0.4 2.2 1 1 0 2 2 2 0 XdhC Rossmann domain DUF364 PF04016.12 gi|284164921|ref|YP_003403200.1| - 0.068 12.7 0.1 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Putative heavy-metal chelation ABC_tran PF00005.27 gi|284164922|ref|YP_003403201.1| - 3.9e-25 89.0 0.0 6.3e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284164922|ref|YP_003403201.1| - 1.3e-13 51.5 0.3 9.7e-10 38.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284164922|ref|YP_003403201.1| - 0.00056 20.6 0.0 0.0019 18.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|284164922|ref|YP_003403201.1| - 0.0031 17.3 0.8 0.0089 15.8 0.2 2.0 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|284164922|ref|YP_003403201.1| - 0.006 16.5 0.0 0.014 15.3 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|284164922|ref|YP_003403201.1| - 0.024 15.1 0.0 0.041 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|284164922|ref|YP_003403201.1| - 0.051 13.6 0.0 0.2 11.8 0.0 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|284164922|ref|YP_003403201.1| - 0.052 13.3 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284164922|ref|YP_003403201.1| - 0.062 12.7 0.0 7.2 6.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284164922|ref|YP_003403201.1| - 0.14 12.4 0.0 0.84 9.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|284164922|ref|YP_003403201.1| - 0.18 11.3 0.0 0.28 10.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 gi|284164922|ref|YP_003403201.1| - 0.28 10.8 0.0 5.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.7 gi|284164923|ref|YP_003403202.1| - 1.1e-45 156.1 9.4 2e-45 155.3 9.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284164923|ref|YP_003403202.1| - 1.3e-09 38.2 8.2 2.1e-09 37.6 8.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284164923|ref|YP_003403202.1| - 9.6e-07 28.2 11.7 9.6e-07 28.2 11.7 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284164923|ref|YP_003403202.1| - 7.5e-06 25.6 8.9 2.1e-05 24.2 5.9 2.2 1 1 1 2 2 2 2 ABC-2 family transporter protein Beta_helix PF13229.6 gi|284164924|ref|YP_003403203.1| - 7.2e-10 38.9 1.3 0.0041 17.0 0.2 3.5 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|284164924|ref|YP_003403203.1| - 0.0052 16.6 1.4 7.2 6.4 0.0 3.6 2 1 0 3 3 3 2 Pectate lyase superfamily protein Lactamase_B_3 PF13483.6 gi|284164925|ref|YP_003403204.1| - 8.2e-26 90.8 0.3 9.8e-26 90.6 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284164925|ref|YP_003403204.1| - 8.5e-06 25.4 2.1 1.7e-05 24.4 2.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ParA PF10609.9 gi|284164926|ref|YP_003403205.1| - 2.9e-50 171.0 0.0 3.6e-50 170.7 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|284164926|ref|YP_003403205.1| - 1.4e-12 47.8 0.0 2.5e-12 47.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284164926|ref|YP_003403205.1| - 1.2e-06 28.6 0.7 3.8e-06 26.9 0.3 1.8 2 0 0 2 2 2 1 AAA domain CBP_BcsQ PF06564.12 gi|284164926|ref|YP_003403205.1| - 0.00044 19.8 0.3 0.0012 18.4 0.1 1.6 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|284164926|ref|YP_003403205.1| - 0.00048 19.4 0.5 0.00077 18.7 0.5 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase VirC1 PF07015.11 gi|284164926|ref|YP_003403205.1| - 0.00057 19.3 0.1 0.0011 18.3 0.1 1.4 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.11 gi|284164926|ref|YP_003403205.1| - 0.0012 18.2 0.2 0.0019 17.5 0.2 1.3 1 0 0 1 1 1 1 ATPase MipZ LpxK PF02606.14 gi|284164926|ref|YP_003403205.1| - 0.0085 15.2 0.1 0.013 14.6 0.1 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_26 PF13500.6 gi|284164926|ref|YP_003403205.1| - 0.013 15.3 0.1 0.1 12.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain Glyco_trans_4_4 PF13579.6 gi|284164926|ref|YP_003403205.1| - 0.019 15.4 0.8 0.06 13.8 0.7 2.0 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain SRP54 PF00448.22 gi|284164926|ref|YP_003403205.1| - 0.057 13.1 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FeS_assembly_P PF01883.19 gi|284164926|ref|YP_003403205.1| - 0.059 13.5 0.7 0.25 11.5 0.7 2.2 1 0 0 1 1 1 0 Iron-sulfur cluster assembly protein Molybdopterin PF00384.22 gi|284164928|ref|YP_003403207.1| - 1.1e-35 123.5 0.1 3.2e-31 108.8 0.0 2.3 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284164928|ref|YP_003403207.1| - 2.3e-05 24.4 0.4 0.00016 21.7 0.0 2.5 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|284164928|ref|YP_003403207.1| - 0.12 12.3 0.0 0.36 10.9 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.6 gi|284164929|ref|YP_003403208.1| - 4.2e-31 107.0 7.3 4.2e-31 107.0 7.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284164929|ref|YP_003403208.1| - 1.4e-07 32.0 18.4 4.5e-05 23.9 6.4 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284164929|ref|YP_003403208.1| - 5.3e-05 23.3 17.4 0.036 14.2 5.1 3.4 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284164929|ref|YP_003403208.1| - 5.6e-05 23.2 21.9 0.0049 17.0 7.9 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284164929|ref|YP_003403208.1| - 0.00034 20.3 17.8 0.036 13.9 0.9 4.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284164929|ref|YP_003403208.1| - 0.0004 20.5 19.8 0.019 15.1 0.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284164929|ref|YP_003403208.1| - 0.00045 20.1 22.9 0.013 15.6 1.2 4.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|284164929|ref|YP_003403208.1| - 0.0017 18.9 8.8 0.065 13.8 0.2 3.7 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|284164929|ref|YP_003403208.1| - 0.0056 16.7 24.1 0.27 11.4 0.7 4.7 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284164929|ref|YP_003403208.1| - 0.41 11.1 0.1 0.41 11.1 0.1 3.9 3 2 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284164929|ref|YP_003403208.1| - 0.77 10.0 8.6 18 5.5 5.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284164929|ref|YP_003403208.1| - 1.5 9.5 19.1 0.73 10.4 0.2 3.8 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284164929|ref|YP_003403208.1| - 1.5 9.8 17.0 4.6 8.2 0.6 3.7 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Nitrate_red_del PF02613.15 gi|284164930|ref|YP_003403209.1| - 2.1e-20 73.1 0.3 3.2e-20 72.5 0.3 1.3 1 1 0 1 1 1 1 Nitrate reductase delta subunit Herpes_capsid PF06112.11 gi|284164930|ref|YP_003403209.1| - 6.4 6.8 5.1 18 5.4 4.2 1.9 2 0 0 2 2 2 0 Gammaherpesvirus capsid protein MobB PF03205.14 gi|284164931|ref|YP_003403210.1| - 1.6e-22 79.9 0.0 1.4e-20 73.5 0.0 2.1 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.27 gi|284164931|ref|YP_003403210.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|284164931|ref|YP_003403210.1| - 0.0021 18.5 0.1 0.009 16.4 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|284164931|ref|YP_003403210.1| - 0.0026 17.9 0.0 0.0054 16.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.10 gi|284164931|ref|YP_003403210.1| - 0.0078 15.7 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.9 gi|284164931|ref|YP_003403210.1| - 0.0079 15.9 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|284164931|ref|YP_003403210.1| - 0.011 16.2 0.0 0.043 14.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|284164931|ref|YP_003403210.1| - 0.022 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|284164931|ref|YP_003403210.1| - 0.024 14.5 0.0 0.057 13.3 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase PRK PF00485.18 gi|284164931|ref|YP_003403210.1| - 0.029 14.1 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Roc PF08477.13 gi|284164931|ref|YP_003403210.1| - 0.035 14.3 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|284164931|ref|YP_003403210.1| - 0.047 13.8 0.0 0.083 13.0 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|284164931|ref|YP_003403210.1| - 0.048 13.6 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|284164931|ref|YP_003403210.1| - 0.074 13.4 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|284164931|ref|YP_003403210.1| - 0.076 12.9 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|284164931|ref|YP_003403210.1| - 0.078 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|284164931|ref|YP_003403210.1| - 0.12 12.7 0.0 0.14 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|284164931|ref|YP_003403210.1| - 0.13 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.6 gi|284164931|ref|YP_003403210.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|284164931|ref|YP_003403210.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|284164931|ref|YP_003403210.1| - 0.22 11.6 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain SBP_bac_11 PF13531.6 gi|284164932|ref|YP_003403211.1| - 1.2e-29 103.7 0.1 1.6e-29 103.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284164932|ref|YP_003403211.1| - 2.4e-05 24.4 0.0 5.2e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|284164933|ref|YP_003403212.1| - 6.6e-17 61.8 11.9 6.6e-17 61.8 11.9 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_10 PF04967.12 gi|284164934|ref|YP_003403213.1| - 1.4e-18 66.5 0.2 2.4e-18 65.7 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284164934|ref|YP_003403213.1| - 1.8e-09 37.7 0.0 3.3e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|284164934|ref|YP_003403213.1| - 0.00022 21.0 0.1 0.00086 19.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|284164934|ref|YP_003403213.1| - 0.0006 19.3 0.1 0.0013 18.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284164934|ref|YP_003403213.1| - 0.0091 15.8 0.1 0.023 14.5 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284164934|ref|YP_003403213.1| - 0.021 14.4 0.2 0.042 13.4 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AraC PF00165.23 gi|284164934|ref|YP_003403213.1| - 0.021 14.9 0.0 8.7 6.6 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.14 gi|284164934|ref|YP_003403213.1| - 0.03 14.5 0.0 0.052 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_28 PF13518.6 gi|284164934|ref|YP_003403213.1| - 0.053 13.7 0.0 0.85 9.8 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|284164934|ref|YP_003403213.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_11 PF08279.12 gi|284164934|ref|YP_003403213.1| - 0.085 12.8 0.1 0.53 10.3 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_3 PF01381.22 gi|284164934|ref|YP_003403213.1| - 0.087 12.9 0.1 0.43 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix GntR PF00392.21 gi|284164934|ref|YP_003403213.1| - 0.13 11.9 0.3 0.27 10.9 0.3 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Phage_CI_repr PF07022.13 gi|284164934|ref|YP_003403213.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Fer4_5 PF12801.7 gi|284164935|ref|YP_003403214.1| - 4.5e-08 32.9 15.1 2.5e-05 24.1 0.4 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284164935|ref|YP_003403214.1| - 1.7 8.8 5.4 1.2 9.3 2.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain ECH_1 PF00378.20 gi|284164936|ref|YP_003403215.1| - 6.4e-52 176.4 0.0 7.1e-52 176.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284164936|ref|YP_003403215.1| - 1.2e-28 100.6 0.1 2.5e-28 99.6 0.1 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF802 PF05650.11 gi|284164936|ref|YP_003403215.1| - 5.2 7.6 8.7 1.6 9.3 2.6 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF802) DUF4307 PF14155.6 gi|284164941|ref|YP_003403220.1| - 0.063 13.1 0.0 0.063 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) PyrI PF01948.18 gi|284164942|ref|YP_003403221.1| - 3.9e-33 113.6 0.3 4.9e-33 113.3 0.3 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|284164942|ref|YP_003403221.1| - 9.3e-12 44.7 0.1 1.7e-11 43.8 0.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-RING_7 PF02591.15 gi|284164942|ref|YP_003403221.1| - 0.37 11.0 1.7 1.5 9.0 0.1 2.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain OTCace_N PF02729.21 gi|284164943|ref|YP_003403222.1| - 2.6e-43 147.6 0.0 6.5e-43 146.3 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|284164943|ref|YP_003403222.1| - 3.9e-29 101.8 0.0 5.4e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 2CSK_N PF08521.10 gi|284164943|ref|YP_003403222.1| - 0.053 13.6 0.0 0.098 12.8 0.0 1.5 1 0 0 1 1 1 0 Two-component sensor kinase N-terminal ATPase PF06745.13 gi|284164944|ref|YP_003403223.1| - 8.5e-08 31.8 0.0 1.6e-05 24.4 0.0 2.2 1 1 1 2 2 2 2 KaiC FKBP_C PF00254.28 gi|284164946|ref|YP_003403225.1| - 1.8e-07 31.4 0.1 1.8e-07 31.4 0.1 1.8 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.14 gi|284164946|ref|YP_003403225.1| - 0.062 13.0 0.2 0.15 11.7 0.2 1.7 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) CYTH PF01928.21 gi|284164947|ref|YP_003403226.1| - 1.1e-42 146.0 5.2 1.2e-42 145.8 5.2 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.19 gi|284164948|ref|YP_003403227.1| - 1.9e-171 570.2 5.4 2.2e-171 570.0 5.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|284164948|ref|YP_003403227.1| - 0.021 15.5 0.9 0.12 13.0 0.0 2.7 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain MFS_1 PF07690.16 gi|284164949|ref|YP_003403228.1| - 2.6e-57 194.4 79.4 8e-44 150.0 45.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|284164949|ref|YP_003403228.1| - 9.7 4.3 11.7 0.022 13.0 1.1 1.9 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family ThiI PF02568.14 gi|284164950|ref|YP_003403229.1| - 5.3e-41 140.4 0.0 8.5e-41 139.7 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|284164950|ref|YP_003403229.1| - 1.1e-17 64.5 0.0 2e-17 63.6 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|284164950|ref|YP_003403229.1| - 7.9e-05 22.3 0.0 0.36 10.3 0.0 2.6 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|284164950|ref|YP_003403229.1| - 0.095 12.4 0.3 1.6 8.4 0.0 2.9 3 1 0 3 3 3 0 PP-loop family tRNA_Me_trans PF03054.16 gi|284164950|ref|YP_003403229.1| - 0.22 10.3 0.0 0.33 9.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase CCD48 PF15799.5 gi|284164951|ref|YP_003403230.1| - 0.037 12.3 2.3 0.054 11.8 2.3 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 48 PALP PF00291.25 gi|284164953|ref|YP_003403232.1| - 1.6e-61 208.3 0.1 2.1e-61 207.9 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|284164953|ref|YP_003403232.1| - 0.0021 18.0 0.1 0.0048 16.9 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.25 gi|284164953|ref|YP_003403232.1| - 0.19 11.2 0.1 8.1 5.8 0.0 2.1 1 1 1 2 2 2 0 short chain dehydrogenase Thioredoxin PF00085.20 gi|284164954|ref|YP_003403233.1| - 1.3e-07 31.5 0.0 1.7e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|284164954|ref|YP_003403233.1| - 6.6e-05 22.7 0.0 0.00012 21.9 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|284164954|ref|YP_003403233.1| - 0.0002 21.6 0.0 0.015 15.6 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|284164954|ref|YP_003403233.1| - 0.0095 16.4 0.1 0.033 14.6 0.1 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.10 gi|284164954|ref|YP_003403233.1| - 0.013 15.2 0.1 0.26 11.0 0.0 2.0 1 1 1 2 2 2 0 Redoxin Thioredoxin_3 PF13192.6 gi|284164954|ref|YP_003403233.1| - 0.015 15.3 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|284164954|ref|YP_003403233.1| - 0.021 15.0 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA PF00578.21 gi|284164954|ref|YP_003403233.1| - 0.058 13.3 0.0 0.18 11.7 0.0 1.7 1 1 0 1 1 1 0 AhpC/TSA family Metallophos_2 PF12850.7 gi|284164955|ref|YP_003403234.1| - 1.8e-11 44.5 0.0 9.2e-05 22.7 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284164955|ref|YP_003403234.1| - 5.6e-09 36.8 0.4 2e-07 31.7 0.3 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Thioredox_DsbH PF03190.15 gi|284164956|ref|YP_003403235.1| - 2.1e-74 248.9 0.1 3.7e-74 248.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|284164956|ref|YP_003403235.1| - 8.7e-11 41.9 0.0 1.9e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|284164956|ref|YP_003403235.1| - 2.2e-09 37.0 0.2 0.00018 20.9 0.0 2.5 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|284164956|ref|YP_003403235.1| - 0.00033 20.3 0.0 0.014 14.9 0.0 2.5 2 1 0 2 2 2 1 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|284164956|ref|YP_003403235.1| - 0.00037 20.0 0.1 0.21 11.0 0.0 2.7 2 1 0 3 3 3 2 D-glucuronyl C5-epimerase C-terminus Glyco_hydro_88 PF07470.13 gi|284164956|ref|YP_003403235.1| - 0.0076 15.4 0.1 0.15 11.1 0.0 2.6 3 0 0 3 3 3 1 Glycosyl Hydrolase Family 88 LANC_like PF05147.13 gi|284164956|ref|YP_003403235.1| - 0.16 10.5 0.0 9 4.8 0.0 3.3 4 0 0 4 4 4 0 Lanthionine synthetase C-like protein CHRD PF07452.12 gi|284164957|ref|YP_003403236.1| - 7.6e-20 72.0 1.5 7.8e-20 72.0 0.1 1.7 2 0 0 2 2 2 1 CHRD domain LmjF365940-deam PF14421.6 gi|284164957|ref|YP_003403236.1| - 0.072 12.7 0.1 0.072 12.7 0.1 1.3 1 1 0 1 1 1 0 A distinct subfamily of CDD/CDA-like deaminases Aconitase PF00330.20 gi|284164958|ref|YP_003403237.1| - 8.4e-168 559.1 0.0 1.1e-167 558.7 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|284164958|ref|YP_003403237.1| - 3e-41 140.8 0.0 5.3e-41 140.0 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain HMA PF00403.26 gi|284164959|ref|YP_003403238.1| - 9.9e-12 45.1 0.3 1.1e-11 45.0 0.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF4162 PF13732.6 gi|284164959|ref|YP_003403238.1| - 0.1 13.3 0.0 0.11 13.2 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) DHFR_1 PF00186.19 gi|284164960|ref|YP_003403239.1| - 5.2e-49 166.0 0.0 6e-49 165.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase baeRF_family10 PF18854.1 gi|284164960|ref|YP_003403239.1| - 0.021 15.0 0.1 0.032 14.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 NBD_C PF17042.5 gi|284164960|ref|YP_003403239.1| - 0.049 14.1 0.1 0.067 13.7 0.1 1.1 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain ArAE_2 PF10334.9 gi|284164960|ref|YP_003403239.1| - 0.058 13.2 0.0 0.082 12.7 0.0 1.1 1 0 0 1 1 1 0 Aromatic acid exporter family member 2 RNA_pol_inhib PF16857.5 gi|284164960|ref|YP_003403239.1| - 0.12 12.2 0.3 0.21 11.4 0.3 1.4 1 0 0 1 1 1 0 RNA polymerase inhibitor Thymidylat_synt PF00303.19 gi|284164961|ref|YP_003403240.1| - 1.9e-95 319.0 0.0 2.4e-95 318.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DUF2238 PF09997.9 gi|284164963|ref|YP_003403242.1| - 0.0011 18.8 6.2 0.062 13.1 6.2 2.3 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4233 PF14017.6 gi|284164963|ref|YP_003403242.1| - 0.12 12.7 23.4 0.32 11.4 8.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) RNase_H_2 PF13482.6 gi|284164964|ref|YP_003403243.1| - 2.2e-37 128.6 0.0 2.9e-37 128.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.6 gi|284164964|ref|YP_003403243.1| - 4.2e-09 36.9 0.0 9.9e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|284164964|ref|YP_003403243.1| - 0.00075 19.2 0.1 0.013 15.4 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|284164964|ref|YP_003403243.1| - 0.00081 19.2 0.0 0.0045 16.8 0.0 2.1 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DEAD PF00270.29 gi|284164965|ref|YP_003403244.1| - 4.5e-21 75.4 0.0 6.8e-20 71.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|284164965|ref|YP_003403244.1| - 1.8e-14 54.2 0.1 5.2e-11 43.1 0.3 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|284164965|ref|YP_003403244.1| - 1.5e-10 41.4 0.0 7.9e-10 39.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|284164965|ref|YP_003403244.1| - 2.3e-09 37.5 0.0 4e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Methyltransf_24 PF13578.6 gi|284164965|ref|YP_003403244.1| - 0.014 16.4 1.6 0.06 14.4 0.1 2.8 3 0 0 3 3 3 0 Methyltransferase domain DNA_pol_phi PF04931.13 gi|284164965|ref|YP_003403244.1| - 0.83 7.7 3.5 1.2 7.1 3.5 1.1 1 0 0 1 1 1 0 DNA polymerase phi Usp PF00582.26 gi|284164966|ref|YP_003403245.1| - 1.1e-17 64.9 0.6 1.2e-17 64.7 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_A PF01071.19 gi|284164967|ref|YP_003403246.1| - 4.3e-53 180.0 0.1 1e-52 178.8 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|284164967|ref|YP_003403246.1| - 2e-21 76.6 0.1 4.1e-21 75.6 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|284164967|ref|YP_003403246.1| - 1.1e-13 51.2 0.2 2.8e-13 49.9 0.2 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|284164967|ref|YP_003403246.1| - 8.2e-05 22.7 0.0 0.00016 21.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|284164967|ref|YP_003403246.1| - 0.0066 16.0 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|284164967|ref|YP_003403246.1| - 0.0092 15.3 0.0 0.034 13.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp DUF2939 PF11159.8 gi|284164968|ref|YP_003403247.1| - 0.011 16.2 1.0 0.069 13.6 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2939) Aminotran_3 PF00202.21 gi|284164969|ref|YP_003403248.1| - 2.1e-77 260.5 0.0 1.3e-76 257.9 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-III SnoaL PF07366.12 gi|284164970|ref|YP_003403249.1| - 1.3e-30 105.8 0.2 1.4e-30 105.7 0.2 1.0 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|284164970|ref|YP_003403249.1| - 2.9e-19 69.6 1.1 3.4e-19 69.4 1.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|284164970|ref|YP_003403249.1| - 4.7e-06 26.9 0.3 6.7e-06 26.5 0.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|284164970|ref|YP_003403249.1| - 0.00052 20.3 0.2 0.00073 19.8 0.2 1.3 1 1 0 1 1 1 1 SnoaL-like domain PHZA_PHZB PF03284.13 gi|284164970|ref|YP_003403249.1| - 0.0026 17.4 0.0 0.0031 17.1 0.0 1.1 1 0 0 1 1 1 1 Phenazine biosynthesis protein A/B LEH PF07858.12 gi|284164970|ref|YP_003403249.1| - 0.0034 17.5 0.2 0.0068 16.5 0.2 1.4 1 1 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain NMO PF03060.15 gi|284164970|ref|YP_003403249.1| - 0.039 13.3 0.0 0.043 13.2 0.0 1.0 1 0 0 1 1 1 0 Nitronate monooxygenase DUF4010 PF13194.6 gi|284164971|ref|YP_003403250.1| - 1e-51 175.6 29.2 1e-51 175.6 29.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|284164971|ref|YP_003403250.1| - 1.4e-24 86.8 11.4 1.4e-24 86.8 11.4 3.8 2 1 1 3 3 3 1 MgtC family PadR PF03551.14 gi|284164972|ref|YP_003403251.1| - 2.5e-18 65.8 1.6 3e-18 65.5 1.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284164972|ref|YP_003403251.1| - 0.0038 17.2 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|284164972|ref|YP_003403251.1| - 0.0043 16.8 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|284164972|ref|YP_003403251.1| - 0.016 15.6 0.3 0.02 15.4 0.3 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284164972|ref|YP_003403251.1| - 0.057 13.3 1.2 2.2 8.2 0.1 2.4 3 0 0 3 3 3 0 MarR family DUF4364 PF14277.6 gi|284164972|ref|YP_003403251.1| - 0.092 12.5 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|284164972|ref|YP_003403251.1| - 0.1 12.8 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DASH_Dad4 PF08650.10 gi|284164973|ref|YP_003403252.1| - 0.11 12.5 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 DASH complex subunit Dad4 CarboxypepD_reg PF13620.6 gi|284164974|ref|YP_003403253.1| - 1.6e-08 34.7 0.1 0.0015 18.8 0.0 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|284164974|ref|YP_003403253.1| - 5.6e-05 23.1 0.4 0.13 12.3 0.0 2.5 2 0 0 2 2 2 2 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|284164974|ref|YP_003403253.1| - 0.00011 22.2 0.1 0.0059 16.6 0.0 2.7 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) DUF2606 PF10794.9 gi|284164974|ref|YP_003403253.1| - 0.00074 19.3 0.0 1.6 8.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2606) SpaA PF17802.1 gi|284164974|ref|YP_003403253.1| - 0.0038 17.5 8.2 0.0038 17.5 8.2 2.3 2 1 0 2 2 2 1 Prealbumin-like fold domain Invasin_D3 PF09134.10 gi|284164974|ref|YP_003403253.1| - 0.0065 16.8 2.9 0.025 14.9 0.6 2.6 2 1 0 2 2 2 1 Invasin, domain 3 MG4 PF17789.1 gi|284164974|ref|YP_003403253.1| - 0.013 15.6 0.4 0.13 12.4 0.1 2.3 2 0 0 2 2 2 0 Macroglobulin domain MG4 TAT_signal PF10518.9 gi|284164974|ref|YP_003403253.1| - 0.049 13.5 1.1 0.095 12.6 1.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HypA PF01155.19 gi|284164975|ref|YP_003403254.1| - 0.01 15.8 1.3 0.025 14.6 1.2 1.8 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|284164975|ref|YP_003403254.1| - 0.026 14.6 0.3 0.046 13.8 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|284164975|ref|YP_003403254.1| - 0.095 12.2 1.9 0.25 10.9 1.9 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding zf-IS66 PF13005.7 gi|284164975|ref|YP_003403254.1| - 0.098 13.1 4.8 0.36 11.3 0.1 3.0 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 MAP70 PF07058.11 gi|284164975|ref|YP_003403254.1| - 0.11 11.3 0.3 0.16 10.7 0.3 1.1 1 0 0 1 1 1 0 Microtubule-associated protein 70 DUF2072 PF09845.9 gi|284164975|ref|YP_003403254.1| - 0.12 12.7 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein Lsr2 PF11774.8 gi|284164975|ref|YP_003403254.1| - 0.12 12.5 0.7 0.23 11.6 0.2 1.8 1 1 0 1 1 1 0 Lsr2 Zn-ribbon_8 PF09723.10 gi|284164975|ref|YP_003403254.1| - 0.29 11.3 1.9 0.93 9.7 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284164975|ref|YP_003403254.1| - 0.31 10.5 1.9 2.6 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|284164975|ref|YP_003403254.1| - 1.1 9.2 6.5 3.5 7.7 0.1 3.0 2 1 1 3 3 3 0 Transposase zinc-ribbon domain DUF1451 PF07295.11 gi|284164975|ref|YP_003403254.1| - 1.9 8.5 3.7 1.2 9.1 0.7 2.2 2 1 0 2 2 2 0 Zinc-ribbon containing domain UPF0547 PF10571.9 gi|284164975|ref|YP_003403254.1| - 6.1 7.0 6.1 1.3 9.1 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OPT PF03169.15 gi|284164976|ref|YP_003403255.1| - 4.9e-116 388.8 47.2 6e-116 388.5 47.2 1.1 1 0 0 1 1 1 1 OPT oligopeptide transporter protein PqqD PF05402.12 gi|284164977|ref|YP_003403256.1| - 2.8e-10 40.3 0.0 5e-10 39.5 0.0 1.3 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Exo_endo_phos PF03372.23 gi|284164977|ref|YP_003403256.1| - 0.099 12.1 0.7 0.12 11.9 0.7 1.1 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family Pyocin_S PF06958.12 gi|284164977|ref|YP_003403256.1| - 0.18 12.3 0.6 0.21 12.1 0.6 1.5 1 1 0 1 1 1 0 S-type Pyocin THF_DHG_CYH_C PF02882.19 gi|284164978|ref|YP_003403257.1| - 1.1e-67 226.4 0.6 1.5e-67 225.9 0.6 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|284164978|ref|YP_003403257.1| - 3.2e-36 124.1 0.1 5.1e-36 123.5 0.1 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain pPIWI_RE_REase PF18154.1 gi|284164978|ref|YP_003403257.1| - 0.065 13.2 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 REase associating with pPIWI_RE SHMT PF00464.19 gi|284164980|ref|YP_003403259.1| - 4.6e-155 516.1 0.0 5.4e-155 515.9 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|284164980|ref|YP_003403259.1| - 2.6e-08 33.5 0.0 1.4e-06 27.8 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|284164980|ref|YP_003403259.1| - 1.9e-07 30.6 0.0 4.1e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|284164980|ref|YP_003403259.1| - 0.15 11.3 0.2 0.22 10.8 0.2 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family RNase_P_p30 PF01876.16 gi|284164983|ref|YP_003403262.1| - 5.9e-38 130.5 0.0 6.9e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 SPOB_ab PF14682.6 gi|284164983|ref|YP_003403262.1| - 0.091 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Sporulation initiation phospho-transferase B, C-terminal Methyltransf_25 PF13649.6 gi|284164984|ref|YP_003403263.1| - 1.4e-17 64.2 0.0 2.6e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284164984|ref|YP_003403263.1| - 8.2e-15 54.9 0.0 1.3e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284164984|ref|YP_003403263.1| - 8.8e-13 48.7 0.1 4.6e-12 46.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284164984|ref|YP_003403263.1| - 7.3e-11 42.7 0.0 1.3e-10 41.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284164984|ref|YP_003403263.1| - 1.4e-09 37.7 0.1 2.5e-09 36.8 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284164984|ref|YP_003403263.1| - 1e-07 32.0 0.0 4.9e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|284164984|ref|YP_003403263.1| - 4.2e-06 26.4 0.0 6.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|284164984|ref|YP_003403263.1| - 0.00053 19.5 0.0 0.00076 19.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.12 gi|284164984|ref|YP_003403263.1| - 0.01 15.0 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_18 PF12847.7 gi|284164984|ref|YP_003403263.1| - 0.01 15.8 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|284164984|ref|YP_003403263.1| - 0.012 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|284164984|ref|YP_003403263.1| - 0.025 14.1 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.11 gi|284164984|ref|YP_003403263.1| - 0.034 13.1 0.0 0.11 11.4 0.0 1.6 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase RrnaAD PF00398.20 gi|284164984|ref|YP_003403263.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|284164984|ref|YP_003403263.1| - 0.14 11.9 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|284164984|ref|YP_003403263.1| - 0.21 11.3 0.0 0.29 10.8 0.0 1.2 1 0 0 1 1 1 0 DNA methylase RNase_P_Rpp14 PF01900.19 gi|284164985|ref|YP_003403264.1| - 1e-21 77.1 0.0 1.4e-21 76.6 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|284164986|ref|YP_003403265.1| - 2e-55 187.3 0.0 2.4e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|284164986|ref|YP_003403265.1| - 8.7e-14 50.9 0.1 1.6e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|284164987|ref|YP_003403266.1| - 1.1e-19 70.2 0.0 1.8e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|284164987|ref|YP_003403266.1| - 7.6e-19 67.8 0.0 1.3e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain RCDG1 PF15725.5 gi|284164987|ref|YP_003403266.1| - 0.05 14.0 0.2 0.18 12.3 0.2 2.0 1 1 0 1 1 1 0 Renal cancer differentiation gene 1 protein FUN14 PF04930.15 gi|284164988|ref|YP_003403267.1| - 2.5e-18 66.2 3.6 3.6e-18 65.8 3.6 1.2 1 0 0 1 1 1 1 FUN14 family Peptidase_C5 PF00770.18 gi|284164988|ref|YP_003403267.1| - 0.084 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Adenovirus endoprotease SPC12 PF06645.13 gi|284164988|ref|YP_003403267.1| - 0.15 12.1 3.7 2.3 8.4 0.7 2.2 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) ATPase_gene1 PF09527.10 gi|284164988|ref|YP_003403267.1| - 0.23 11.7 8.2 5.6 7.2 2.9 2.6 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Tmemb_14 PF03647.13 gi|284164988|ref|YP_003403267.1| - 1.3 9.8 7.6 0.6 10.9 0.9 2.1 1 1 1 2 2 2 0 Transmembrane proteins 14C GTP-bdg_N PF13167.6 gi|284164989|ref|YP_003403268.1| - 2e-22 79.6 0.0 6.3e-22 78.1 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|284164989|ref|YP_003403268.1| - 1e-17 64.3 0.0 2.3e-17 63.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|284164989|ref|YP_003403268.1| - 2e-16 60.3 8.5 4.1e-16 59.3 8.5 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|284164989|ref|YP_003403268.1| - 4e-10 39.5 0.1 1.2e-09 38.0 0.1 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|284164989|ref|YP_003403268.1| - 1.9e-09 37.7 0.2 0.00042 20.3 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase cobW PF02492.19 gi|284164989|ref|YP_003403268.1| - 5.2e-07 29.4 0.4 7.2e-05 22.4 0.1 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1_Xtn PF16897.5 gi|284164989|ref|YP_003403268.1| - 6.1e-06 26.2 0.0 1.2e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|284164989|ref|YP_003403268.1| - 0.00014 21.4 0.2 0.22 11.1 0.1 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B Arf PF00025.21 gi|284164989|ref|YP_003403268.1| - 0.00066 19.2 0.2 0.62 9.5 0.1 2.4 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_16 PF13191.6 gi|284164989|ref|YP_003403268.1| - 0.006 17.0 0.9 0.006 17.0 0.9 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|284164989|ref|YP_003403268.1| - 0.0098 15.9 0.0 0.025 14.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|284164989|ref|YP_003403268.1| - 0.023 14.3 0.5 0.41 10.2 0.1 2.9 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|284164989|ref|YP_003403268.1| - 0.037 14.6 0.0 0.22 12.1 0.0 2.4 1 1 1 2 2 2 0 AAA domain MnmE_helical PF12631.7 gi|284164989|ref|YP_003403268.1| - 0.038 14.2 0.2 0.054 13.6 0.2 1.3 1 0 0 1 1 1 0 MnmE helical domain Roc PF08477.13 gi|284164989|ref|YP_003403268.1| - 0.041 14.1 0.0 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 gi|284164989|ref|YP_003403268.1| - 0.063 13.8 0.0 0.19 12.3 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA_23 PF13476.6 gi|284164989|ref|YP_003403268.1| - 0.3 11.6 3.7 16 5.9 0.0 2.4 1 1 1 2 2 2 0 AAA domain LegC3_N PF18654.1 gi|284164989|ref|YP_003403268.1| - 0.65 9.2 4.7 0.67 9.1 1.4 2.1 2 0 0 2 2 2 0 LegC3 N-terminal coiled-coil domain Rx_N PF18052.1 gi|284164989|ref|YP_003403268.1| - 3.8 7.9 5.9 3 8.2 1.1 2.8 2 1 0 2 2 2 0 Rx N-terminal domain Thiolase_N PF00108.23 gi|284164990|ref|YP_003403269.1| - 6.1e-57 192.9 0.0 8.2e-57 192.5 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284164990|ref|YP_003403269.1| - 2.4e-07 30.4 0.1 5.7e-07 29.2 0.1 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284164990|ref|YP_003403269.1| - 0.22 11.1 3.2 0.89 9.1 2.0 2.3 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|284164991|ref|YP_003403270.1| - 2.1e-07 30.8 1.7 3e-07 30.3 1.7 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated PRIMA1 PF16101.5 gi|284164992|ref|YP_003403271.1| - 0.0048 16.9 1.0 0.0082 16.2 1.0 1.3 1 0 0 1 1 1 1 Proline-rich membrane anchor 1 ABC_tran_CTD PF16326.5 gi|284164992|ref|YP_003403271.1| - 0.016 15.5 3.4 6.5 7.1 0.3 3.6 4 0 0 4 4 4 0 ABC transporter C-terminal domain TBCA PF02970.16 gi|284164992|ref|YP_003403271.1| - 0.093 13.1 0.7 0.77 10.1 0.0 2.4 2 0 0 2 2 2 0 Tubulin binding cofactor A DUF4510 PF14971.6 gi|284164992|ref|YP_003403271.1| - 0.74 10.1 8.1 21 5.4 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4510) YtxH PF12732.7 gi|284164992|ref|YP_003403271.1| - 1.1 9.9 4.2 10 6.7 0.1 2.9 2 1 0 3 3 3 0 YtxH-like protein BUD22 PF09073.10 gi|284164992|ref|YP_003403271.1| - 1.5 8.1 17.0 2.4 7.4 17.0 1.4 1 0 0 1 1 1 0 BUD22 Apolipoprotein PF01442.18 gi|284164992|ref|YP_003403271.1| - 8.4 6.2 16.6 1.3 8.9 7.6 2.4 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain DUF883 PF05957.13 gi|284164992|ref|YP_003403271.1| - 8.9 7.0 15.8 1.4 9.6 4.0 3.3 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) NYN PF01936.18 gi|284164993|ref|YP_003403272.1| - 0.14 12.6 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 NYN domain RNase_H_2 PF13482.6 gi|284164995|ref|YP_003403274.1| - 1.9e-34 119.0 0.0 2.6e-34 118.6 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|284164995|ref|YP_003403274.1| - 0.14 11.9 0.0 0.5 10.0 0.0 1.8 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HalOD1 PF18545.1 gi|284164996|ref|YP_003403275.1| - 3.4e-26 91.3 0.3 5.4e-26 90.7 0.3 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 Catalase PF00199.19 gi|284164998|ref|YP_003403277.1| - 5.5e-170 565.6 0.1 7.3e-170 565.2 0.1 1.2 1 0 0 1 1 1 1 Catalase Catalase_C PF18011.1 gi|284164998|ref|YP_003403277.1| - 5.6e-23 81.3 0.2 8.6e-23 80.7 0.2 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases Catalase-rel PF06628.12 gi|284164998|ref|YP_003403277.1| - 1.8e-21 76.1 0.2 3.8e-21 75.1 0.2 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive DJ-1_PfpI PF01965.24 gi|284164998|ref|YP_003403277.1| - 2.3e-11 43.8 2.2 1.5e-10 41.1 0.6 2.3 1 1 1 2 2 2 1 DJ-1/PfpI family Na_H_Exchanger PF00999.21 gi|284164999|ref|YP_003403278.1| - 1.4e-37 129.4 28.3 1.9e-37 129.0 28.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TAT_signal PF10518.9 gi|284165000|ref|YP_003403279.1| - 0.0092 15.8 0.1 0.0092 15.8 0.1 2.4 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence ThiS PF02597.20 gi|284165002|ref|YP_003403281.1| - 7.2e-06 26.6 0.0 3e-05 24.6 0.0 2.0 1 1 0 1 1 1 1 ThiS family HATPase_c PF02518.26 gi|284165004|ref|YP_003403283.1| - 4.7e-26 91.5 0.0 1.1e-25 90.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284165004|ref|YP_003403283.1| - 3.3e-11 43.0 0.1 3.3e-11 43.0 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|284165004|ref|YP_003403283.1| - 9.6e-07 28.5 8.8 2.6e-06 27.1 8.8 1.7 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|284165004|ref|YP_003403283.1| - 0.00066 19.6 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain Tektin PF03148.14 gi|284165004|ref|YP_003403283.1| - 0.033 12.9 3.2 0.054 12.2 3.2 1.3 1 0 0 1 1 1 0 Tektin family ATP-synt_E PF05680.12 gi|284165004|ref|YP_003403283.1| - 0.068 13.5 1.4 0.13 12.6 1.4 1.4 1 0 0 1 1 1 0 ATP synthase E chain Mating_C PF12737.7 gi|284165004|ref|YP_003403283.1| - 0.088 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 Wtap PF17098.5 gi|284165004|ref|YP_003403283.1| - 0.19 11.7 6.4 0.4 10.6 6.4 1.4 1 0 0 1 1 1 0 WTAP/Mum2p family DivIC PF04977.15 gi|284165004|ref|YP_003403283.1| - 1.2 9.0 4.8 2.4 8.0 4.8 1.4 1 0 0 1 1 1 0 Septum formation initiator Radical_SAM PF04055.21 gi|284165005|ref|YP_003403284.1| - 4e-22 79.4 0.0 1.5e-21 77.5 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|284165005|ref|YP_003403284.1| - 4.5e-08 33.5 0.0 9e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|284165005|ref|YP_003403284.1| - 4.3e-06 27.1 0.0 1e-05 26.0 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|284165005|ref|YP_003403284.1| - 0.00055 20.1 0.0 0.0014 18.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain PaaB PF06243.11 gi|284165006|ref|YP_003403285.1| - 4.2e-07 30.1 0.0 6.4e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|284165007|ref|YP_003403286.1| - 2.5e-20 73.5 0.0 4.5e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|284165007|ref|YP_003403286.1| - 2.2e-05 24.7 0.0 3.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|284165007|ref|YP_003403286.1| - 0.027 14.6 0.0 0.045 13.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|284165007|ref|YP_003403286.1| - 0.034 14.1 0.2 0.18 11.7 0.0 2.1 2 1 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1906 PF08924.11 gi|284165007|ref|YP_003403286.1| - 0.17 12.0 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) CPSase_L_D2 PF02786.17 gi|284165008|ref|YP_003403287.1| - 4e-70 235.6 0.2 1.5e-69 233.7 0.2 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|284165008|ref|YP_003403287.1| - 1.3e-45 154.4 0.5 7.4e-45 152.0 0.4 2.2 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|284165008|ref|YP_003403287.1| - 1.3e-34 118.5 0.0 3.1e-34 117.3 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|284165008|ref|YP_003403287.1| - 3.8e-17 61.9 7.0 1.4e-16 60.1 7.0 2.0 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|284165008|ref|YP_003403287.1| - 3.8e-08 33.0 3.7 0.0012 18.6 0.6 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.13 gi|284165008|ref|YP_003403287.1| - 1.1e-05 25.1 0.1 2.9e-05 23.7 0.1 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|284165008|ref|YP_003403287.1| - 5.8e-05 22.7 0.1 0.00011 21.8 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|284165008|ref|YP_003403287.1| - 0.00032 20.5 0.0 0.0007 19.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RnfC_N PF13375.6 gi|284165008|ref|YP_003403287.1| - 0.0067 16.4 0.8 0.024 14.6 0.6 2.0 2 1 1 3 3 3 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|284165008|ref|YP_003403287.1| - 0.0089 15.3 2.0 1.2 8.3 0.1 2.8 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|284165008|ref|YP_003403287.1| - 0.024 15.3 1.8 4.9 7.9 0.2 2.8 2 0 0 2 2 2 0 HlyD family secretion protein GCV_H PF01597.19 gi|284165008|ref|YP_003403287.1| - 0.17 11.7 2.3 0.37 10.7 1.6 1.9 2 0 0 2 2 2 0 Glycine cleavage H-protein CN_hydrolase PF00795.22 gi|284165009|ref|YP_003403288.1| - 3.5e-51 174.1 0.0 3.9e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.9 gi|284165010|ref|YP_003403289.1| - 4.2e-19 69.2 1.2 4.7e-19 69.1 1.2 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|284165010|ref|YP_003403289.1| - 1.4e-06 28.1 0.0 1.7e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|284165010|ref|YP_003403289.1| - 0.00013 22.2 0.3 0.00017 21.8 0.3 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport FaeA PF04703.12 gi|284165011|ref|YP_003403290.1| - 0.0027 18.0 0.0 0.0035 17.7 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|284165011|ref|YP_003403290.1| - 0.0064 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_36 PF13730.6 gi|284165011|ref|YP_003403290.1| - 0.086 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HCV_NS4a PF01006.20 gi|284165012|ref|YP_003403291.1| - 5.7 6.8 7.9 3.1 7.6 6.3 1.5 1 1 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a Levi_coat PF01819.17 gi|284165013|ref|YP_003403292.1| - 0.12 12.4 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Levivirus coat protein OAD_gamma PF04277.13 gi|284165013|ref|YP_003403292.1| - 0.46 11.1 7.1 0.061 13.9 2.6 1.8 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.22 gi|284165014|ref|YP_003403293.1| - 2.9e-196 652.9 0.0 3.2e-196 652.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|284165014|ref|YP_003403293.1| - 0.00027 20.5 0.0 0.00058 19.4 0.0 1.5 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) Peripla_BP_6 PF13458.6 gi|284165015|ref|YP_003403294.1| - 4.6e-21 75.8 3.5 3.8e-15 56.4 0.6 2.2 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|284165015|ref|YP_003403294.1| - 1.1e-17 64.2 0.0 2e-13 50.2 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region ABC_tran PF00005.27 gi|284165016|ref|YP_003403295.1| - 4.3e-31 108.3 0.0 6.3e-31 107.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165016|ref|YP_003403295.1| - 1.6e-09 38.0 0.2 0.0015 18.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284165016|ref|YP_003403295.1| - 0.00032 20.2 1.2 0.0083 15.6 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|284165016|ref|YP_003403295.1| - 0.00035 20.2 0.0 0.00064 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284165016|ref|YP_003403295.1| - 0.0013 18.4 0.1 0.0027 17.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284165016|ref|YP_003403295.1| - 0.0014 19.1 0.0 0.0021 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|284165016|ref|YP_003403295.1| - 0.0023 17.7 0.3 0.0031 17.2 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|284165016|ref|YP_003403295.1| - 0.018 14.8 0.0 0.083 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|284165016|ref|YP_003403295.1| - 0.037 14.3 0.2 0.25 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|284165016|ref|YP_003403295.1| - 0.11 12.9 0.0 0.15 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain T3SS_LEE_assoc PF13327.6 gi|284165016|ref|YP_003403295.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system subunit AAA_33 PF13671.6 gi|284165016|ref|YP_003403295.1| - 0.13 12.5 0.6 0.39 10.9 0.6 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|284165016|ref|YP_003403295.1| - 0.15 12.5 0.1 0.25 11.7 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|284165016|ref|YP_003403295.1| - 0.18 11.7 0.1 0.35 10.8 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_14 PF13173.6 gi|284165016|ref|YP_003403295.1| - 0.2 11.7 0.0 0.59 10.2 0.0 2.2 1 1 0 1 1 1 0 AAA domain Oxidored_FMN PF00724.20 gi|284165016|ref|YP_003403295.1| - 0.2 10.9 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 NADH:flavin oxidoreductase / NADH oxidase family Rad17 PF03215.15 gi|284165016|ref|YP_003403295.1| - 0.24 11.3 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_tran PF00005.27 gi|284165017|ref|YP_003403296.1| - 4.7e-30 104.9 0.0 6.2e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165017|ref|YP_003403296.1| - 1.1e-11 45.1 0.3 2.2e-05 24.4 0.2 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|284165017|ref|YP_003403296.1| - 8e-09 35.2 0.2 1.5e-08 34.3 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|284165017|ref|YP_003403296.1| - 9.1e-05 23.0 1.2 0.00016 22.2 1.2 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284165017|ref|YP_003403296.1| - 0.00023 20.7 0.6 0.21 11.0 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284165017|ref|YP_003403296.1| - 0.00053 19.7 0.2 0.0012 18.5 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain MukB PF04310.12 gi|284165017|ref|YP_003403296.1| - 0.02 14.7 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_16 PF13191.6 gi|284165017|ref|YP_003403296.1| - 0.021 15.2 0.0 0.029 14.8 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|284165017|ref|YP_003403296.1| - 0.047 13.3 0.1 0.077 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|284165017|ref|YP_003403296.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|284165017|ref|YP_003403296.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|284165017|ref|YP_003403296.1| - 0.11 12.8 0.4 0.55 10.5 0.4 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|284165017|ref|YP_003403296.1| - 0.14 12.4 0.1 1.6 9.0 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|284165017|ref|YP_003403296.1| - 0.14 12.0 0.1 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase BPD_transp_2 PF02653.16 gi|284165018|ref|YP_003403297.1| - 1.6e-45 155.4 24.0 1.6e-45 155.4 24.0 2.4 3 0 0 3 3 3 1 Branched-chain amino acid transport system / permease component E1-E2_ATPase PF00122.20 gi|284165018|ref|YP_003403297.1| - 0.036 13.6 0.9 0.62 9.6 0.0 2.8 2 1 0 2 2 2 0 E1-E2 ATPase Coa1 PF08695.10 gi|284165018|ref|YP_003403297.1| - 0.14 11.9 0.0 0.34 10.7 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 BPD_transp_2 PF02653.16 gi|284165019|ref|YP_003403298.1| - 9.8e-38 129.8 43.5 9.8e-38 129.8 43.5 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component SNF PF00209.18 gi|284165020|ref|YP_003403299.1| - 6.4e-60 203.3 36.7 4.1e-34 118.2 19.5 2.0 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family adh_short_C2 PF13561.6 gi|284165021|ref|YP_003403300.1| - 2.7e-41 141.7 0.0 5.5e-41 140.7 0.0 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284165021|ref|YP_003403300.1| - 1.5e-37 129.0 0.0 1.7e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|284165021|ref|YP_003403300.1| - 1.8e-08 34.1 0.1 6.2e-08 32.4 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|284165021|ref|YP_003403300.1| - 0.00041 20.3 0.0 0.00062 19.7 0.0 1.4 1 0 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.17 gi|284165021|ref|YP_003403300.1| - 0.0057 15.8 0.1 0.008 15.3 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|284165021|ref|YP_003403300.1| - 0.0077 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|284165021|ref|YP_003403300.1| - 0.019 14.8 0.1 0.036 14.0 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|284165021|ref|YP_003403300.1| - 0.054 12.5 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Response_reg PF00072.24 gi|284165022|ref|YP_003403301.1| - 1.1e-20 73.8 0.0 1.4e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GDPD PF03009.17 gi|284165023|ref|YP_003403302.1| - 6.3e-26 91.7 0.0 2.6e-17 63.4 0.0 2.2 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family UPF0047 PF01894.17 gi|284165024|ref|YP_003403303.1| - 7.5e-34 116.3 0.0 9.3e-34 116.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HEAT_2 PF13646.6 gi|284165025|ref|YP_003403304.1| - 9.7e-17 61.2 27.8 2e-07 31.3 2.7 4.6 3 2 1 4 4 4 4 HEAT repeats HEAT_EZ PF13513.6 gi|284165025|ref|YP_003403304.1| - 2.2e-12 47.2 26.5 0.00015 22.2 2.1 7.1 5 2 2 7 7 7 5 HEAT-like repeat Cnd1 PF12717.7 gi|284165025|ref|YP_003403304.1| - 9.9e-11 41.9 2.1 2.7e-05 24.3 0.2 3.7 2 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.22 gi|284165025|ref|YP_003403304.1| - 4.8e-10 38.8 18.4 0.069 13.4 0.1 7.3 8 0 0 8 8 8 3 HEAT repeat Arm PF00514.23 gi|284165025|ref|YP_003403304.1| - 5e-10 39.1 9.4 0.52 10.4 0.1 6.3 7 0 0 7 7 7 4 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|284165025|ref|YP_003403304.1| - 0.00043 19.0 0.1 0.0024 16.5 0.1 2.1 1 1 1 2 2 2 1 Adaptin N terminal region TPR_19 PF14559.6 gi|284165025|ref|YP_003403304.1| - 0.015 15.8 8.9 0.67 10.5 0.2 3.9 4 0 0 4 4 4 0 Tetratricopeptide repeat TetR_C_16 PF17920.1 gi|284165025|ref|YP_003403304.1| - 0.6 10.4 13.3 5.9 7.2 0.2 4.8 3 1 2 5 5 5 0 Tetracyclin repressor-like, C-terminal domain TPR_9 PF13371.6 gi|284165025|ref|YP_003403304.1| - 2.6 8.3 15.8 4.1 7.6 3.6 4.2 3 1 1 4 4 4 0 Tetratricopeptide repeat SpoVR PF04293.13 gi|284165026|ref|YP_003403305.1| - 2.4e-93 313.1 6.4 9.8e-79 265.0 1.1 2.1 2 0 0 2 2 2 2 SpoVR like protein SOAR PF16533.5 gi|284165026|ref|YP_003403305.1| - 0.1 12.6 0.0 0.31 11.0 0.0 1.8 1 0 0 1 1 1 0 STIM1 Orai1-activating region DUF444 PF04285.12 gi|284165027|ref|YP_003403306.1| - 8.5e-128 427.0 0.5 9.6e-128 426.8 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.6 gi|284165027|ref|YP_003403306.1| - 0.016 15.3 0.2 4.3 7.5 0.1 2.6 2 0 0 2 2 2 0 Tautomerase enzyme PrkA PF06798.12 gi|284165028|ref|YP_003403307.1| - 5.4e-52 177.0 1.8 6.4e-52 176.7 0.4 1.7 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|284165028|ref|YP_003403307.1| - 5.3e-12 45.3 0.0 1.5e-09 37.2 0.0 3.4 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.12 gi|284165029|ref|YP_003403308.1| - 2.2e-71 240.5 9.4 2.2e-71 240.5 9.4 2.1 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|284165029|ref|YP_003403308.1| - 8.2e-64 215.8 0.1 1.3e-63 215.1 0.1 1.3 1 0 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|284165029|ref|YP_003403308.1| - 0.026 14.7 0.6 12 6.0 0.1 2.7 2 0 0 2 2 2 0 RasGAP C-terminus AAA_18 PF13238.6 gi|284165029|ref|YP_003403308.1| - 0.092 13.3 0.4 1.9 9.0 0.0 2.9 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|284165029|ref|YP_003403308.1| - 0.43 10.6 1.6 39 4.2 0.2 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF2188 PF09954.9 gi|284165030|ref|YP_003403309.1| - 0.00025 21.1 0.1 0.00053 20.1 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2188) UPF0179 PF03684.13 gi|284165031|ref|YP_003403310.1| - 2e-48 163.8 0.0 2.3e-48 163.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|284165031|ref|YP_003403310.1| - 0.0039 17.4 0.1 0.0074 16.5 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain MelC1 PF06236.11 gi|284165031|ref|YP_003403310.1| - 0.027 14.5 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 PRKCSH_1 PF13015.6 gi|284165031|ref|YP_003403310.1| - 0.12 12.0 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Glucosidase II beta subunit-like protein PHP_C PF13263.6 gi|284165032|ref|YP_003403311.1| - 9.7e-24 82.9 0.9 9.7e-24 82.9 0.9 1.6 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|284165032|ref|YP_003403311.1| - 2.1e-09 37.9 0.0 3e-09 37.4 0.0 1.3 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.21 gi|284165033|ref|YP_003403312.1| - 2.6e-35 122.8 7.9 9.5e-21 74.8 2.5 2.1 1 1 1 2 2 2 2 Asparagine synthase NAD_synthase PF02540.17 gi|284165033|ref|YP_003403312.1| - 0.019 14.1 0.0 0.042 13.0 0.0 1.6 1 1 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.16 gi|284165033|ref|YP_003403312.1| - 0.035 12.9 0.1 0.05 12.4 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ADSL_C PF10397.9 gi|284165034|ref|YP_003403313.1| - 0.034 14.7 0.1 0.034 14.7 0.1 1.2 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus HET-s_218-289 PF11558.8 gi|284165034|ref|YP_003403313.1| - 0.12 12.4 0.1 0.21 11.6 0.0 1.5 1 1 0 1 1 1 0 Het-s 218-289 ProSAAS PF07259.12 gi|284165034|ref|YP_003403313.1| - 0.15 12.0 1.0 0.75 9.7 0.6 1.9 2 0 0 2 2 2 0 ProSAAS precursor ParA PF10609.9 gi|284165035|ref|YP_003403314.1| - 3.8e-89 298.4 0.1 4.8e-89 298.0 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|284165035|ref|YP_003403314.1| - 1.8e-12 47.5 0.0 3.1e-12 46.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284165035|ref|YP_003403314.1| - 2.2e-10 40.7 0.3 4.5e-08 33.2 0.4 2.2 2 0 0 2 2 2 1 AAA domain FeS_assembly_P PF01883.19 gi|284165035|ref|YP_003403314.1| - 1.3e-08 34.9 0.1 6.1e-08 32.7 0.1 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein ArsA_ATPase PF02374.15 gi|284165035|ref|YP_003403314.1| - 1.7e-07 30.7 1.9 0.00029 20.1 0.7 2.9 2 1 1 3 3 3 2 Anion-transporting ATPase AAA_26 PF13500.6 gi|284165035|ref|YP_003403314.1| - 5.7e-05 23.0 0.1 0.066 13.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain MipZ PF09140.11 gi|284165035|ref|YP_003403314.1| - 0.00011 21.6 1.2 0.00013 21.3 0.4 1.7 2 1 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 gi|284165035|ref|YP_003403314.1| - 0.0021 17.4 0.1 0.0033 16.7 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 gi|284165035|ref|YP_003403314.1| - 0.005 16.3 0.1 0.41 10.1 0.3 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|284165035|ref|YP_003403314.1| - 0.035 13.7 0.2 0.051 13.2 0.2 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|284165035|ref|YP_003403314.1| - 0.038 13.4 0.2 0.1 12.0 0.3 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.20 gi|284165035|ref|YP_003403314.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF1610 PF07754.11 gi|284165035|ref|YP_003403314.1| - 0.12 12.3 0.1 0.28 11.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) NB-ARC PF00931.22 gi|284165035|ref|YP_003403314.1| - 0.13 11.4 0.1 0.23 10.6 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|284165035|ref|YP_003403314.1| - 0.16 11.9 0.2 0.37 10.7 0.2 1.6 1 0 0 1 1 1 0 NTPase TrwB_AAD_bind PF10412.9 gi|284165035|ref|YP_003403314.1| - 0.22 10.4 0.2 9.6 5.0 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Tad PF13400.6 gi|284165036|ref|YP_003403315.1| - 3 8.2 5.7 6.4 7.2 0.2 2.3 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Lig_chan PF00060.26 gi|284165036|ref|YP_003403315.1| - 4 7.3 5.1 11 5.8 0.1 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel Lig_chan PF00060.26 gi|284165037|ref|YP_003403316.1| - 1.7 8.5 3.7 4.7 7.0 0.0 2.0 2 0 0 2 2 2 0 Ligand-gated ion channel ODV-E18 PF10717.9 gi|284165037|ref|YP_003403316.1| - 7.6 6.5 5.6 1.2 9.1 0.2 2.0 1 1 1 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 NrfD PF03916.14 gi|284165038|ref|YP_003403317.1| - 1.6e-20 74.0 19.9 1.6e-20 74.0 19.9 1.6 2 0 0 2 2 2 1 Polysulphide reductase, NrfD Ferredoxin_N PF16947.5 gi|284165039|ref|YP_003403318.1| - 6.2e-35 119.1 6.4 2.2e-34 117.4 6.4 2.0 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|284165039|ref|YP_003403318.1| - 2.9e-15 56.6 21.2 9.1e-06 26.2 2.0 4.1 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284165039|ref|YP_003403318.1| - 5e-12 45.8 19.7 1.7e-08 34.5 0.3 3.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|284165039|ref|YP_003403318.1| - 2.1e-11 43.8 5.8 2.1e-11 43.8 5.8 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284165039|ref|YP_003403318.1| - 7.4e-08 32.4 25.1 0.00014 22.0 7.4 3.5 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284165039|ref|YP_003403318.1| - 9.1e-08 31.6 34.9 0.00012 21.7 3.5 4.9 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284165039|ref|YP_003403318.1| - 2.5e-06 27.3 37.2 0.0015 18.6 2.9 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284165039|ref|YP_003403318.1| - 2.8e-05 23.9 9.8 0.00033 20.6 1.9 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284165039|ref|YP_003403318.1| - 5e-05 24.1 20.4 0.16 12.9 1.7 4.6 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|284165039|ref|YP_003403318.1| - 0.00027 21.7 40.2 0.14 13.1 2.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284165039|ref|YP_003403318.1| - 0.0013 19.1 25.7 0.063 13.7 8.7 3.6 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284165039|ref|YP_003403318.1| - 0.035 14.6 27.1 4.2 8.0 10.3 4.3 1 1 1 3 3 3 0 4Fe-4S dicluster domain TAT_signal PF10518.9 gi|284165039|ref|YP_003403318.1| - 0.047 13.6 1.7 0.074 12.9 1.7 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.6 gi|284165039|ref|YP_003403318.1| - 0.05 14.3 14.5 0.35 11.6 0.2 4.2 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|284165039|ref|YP_003403318.1| - 0.055 14.0 31.3 0.16 12.6 3.3 4.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284165039|ref|YP_003403318.1| - 0.29 11.3 24.3 1.6 8.9 10.8 3.7 3 1 0 3 3 3 0 4Fe-4S dicluster domain Cupin_2 PF07883.11 gi|284165040|ref|YP_003403319.1| - 3.9e-11 42.5 0.5 8.2e-11 41.5 0.1 1.7 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.19 gi|284165040|ref|YP_003403319.1| - 0.0011 18.8 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|284165040|ref|YP_003403319.1| - 0.0083 15.8 0.0 0.012 15.3 0.0 1.3 1 1 0 1 1 1 1 AraC-binding-like domain Pirin_C_2 PF17954.1 gi|284165040|ref|YP_003403319.1| - 0.018 15.2 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain HutD PF05962.11 gi|284165040|ref|YP_003403319.1| - 0.042 13.8 0.0 0.064 13.2 0.0 1.3 1 1 0 1 1 1 0 HutD PCO_ADO PF07847.12 gi|284165040|ref|YP_003403319.1| - 0.064 12.7 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 PCO_ADO HTH_10 PF04967.12 gi|284165041|ref|YP_003403320.1| - 3.1e-19 68.5 0.3 8e-19 67.2 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|284165041|ref|YP_003403320.1| - 0.00093 19.0 1.3 0.0046 16.7 0.1 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284165041|ref|YP_003403320.1| - 0.0025 17.7 0.2 0.022 14.6 0.0 2.4 3 0 0 3 3 2 1 MarR family HTH_24 PF13412.6 gi|284165041|ref|YP_003403320.1| - 0.0036 16.8 0.7 0.0067 16.0 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding PuR_N PF09182.10 gi|284165041|ref|YP_003403320.1| - 0.0094 15.9 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal HTH_35 PF13693.6 gi|284165041|ref|YP_003403320.1| - 0.011 15.7 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BAT PF15915.5 gi|284165041|ref|YP_003403320.1| - 0.014 15.3 3.3 0.054 13.4 3.3 2.1 1 1 0 1 1 1 0 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|284165041|ref|YP_003403320.1| - 0.014 15.2 0.6 0.049 13.5 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284165041|ref|YP_003403320.1| - 0.019 14.5 0.0 0.093 12.3 0.0 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|284165041|ref|YP_003403320.1| - 0.028 14.6 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_Tc3_2 PF01498.18 gi|284165041|ref|YP_003403320.1| - 0.035 14.4 0.1 6.8 7.0 0.0 2.9 4 0 0 4 4 4 0 Transposase Sigma70_r4_2 PF08281.12 gi|284165041|ref|YP_003403320.1| - 0.042 13.5 0.5 0.16 11.7 0.1 2.2 3 0 0 3 3 3 0 Sigma-70, region 4 NYD-SP28 PF14772.6 gi|284165041|ref|YP_003403320.1| - 0.065 13.3 0.0 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 Sperm tail HTH_20 PF12840.7 gi|284165041|ref|YP_003403320.1| - 0.079 13.0 0.6 0.18 11.9 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|284165041|ref|YP_003403320.1| - 0.084 13.1 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Phage_CI_repr PF07022.13 gi|284165041|ref|YP_003403320.1| - 0.096 12.8 0.0 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_30 PF13556.6 gi|284165041|ref|YP_003403320.1| - 0.15 11.9 2.5 7.3 6.5 0.1 3.0 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|284165041|ref|YP_003403320.1| - 0.15 12.2 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase DUF2249 PF10006.9 gi|284165042|ref|YP_003403321.1| - 3.7e-15 55.5 1.2 4.2e-15 55.4 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|284165043|ref|YP_003403322.1| - 1.8e-25 88.6 1.4 2e-25 88.5 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|284165044|ref|YP_003403323.1| - 6.6e-13 48.3 0.2 9.6e-13 47.8 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|284165044|ref|YP_003403323.1| - 0.0082 15.9 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA Abhydrolase_1 PF00561.20 gi|284165045|ref|YP_003403324.1| - 2.1e-26 93.1 0.1 7e-26 91.4 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284165045|ref|YP_003403324.1| - 3.3e-19 70.4 9.9 4.6e-19 69.9 9.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284165045|ref|YP_003403324.1| - 1.5e-11 44.0 0.0 1.7e-10 40.6 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 TetR_C_24 PF17932.1 gi|284165045|ref|YP_003403324.1| - 0.069 13.4 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PGAP1 PF07819.13 gi|284165045|ref|YP_003403324.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein VATC PF18716.1 gi|284165046|ref|YP_003403325.1| - 0.012 15.5 1.5 0.022 14.6 1.5 1.5 1 1 0 1 1 1 0 Vms1-associating treble clef domain zf-FCS PF06467.14 gi|284165046|ref|YP_003403325.1| - 1.3 9.1 5.6 9.7 6.2 5.6 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Glu-tRNAGln PF02686.15 gi|284165047|ref|YP_003403326.1| - 1.1e-15 57.6 4.2 1.7e-15 57.0 4.2 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|284165048|ref|YP_003403327.1| - 7.6e-149 496.5 0.1 9.1e-149 496.2 0.1 1.0 1 0 0 1 1 1 1 Amidase MarR PF01047.22 gi|284165050|ref|YP_003403329.1| - 0.00016 21.5 0.0 0.00022 21.1 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|284165050|ref|YP_003403329.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|284165050|ref|YP_003403329.1| - 0.013 15.7 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|284165050|ref|YP_003403329.1| - 0.017 15.0 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|284165050|ref|YP_003403329.1| - 0.044 14.3 0.0 0.055 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TANGO2 PF05742.12 gi|284165051|ref|YP_003403330.1| - 2e-21 77.2 0.0 3.9e-21 76.3 0.0 1.5 1 1 0 1 1 1 1 Transport and Golgi organisation 2 BCCT PF02028.17 gi|284165052|ref|YP_003403331.1| - 1.5e-117 393.0 43.9 1.8e-117 392.8 43.9 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter AMP-binding PF00501.28 gi|284165053|ref|YP_003403332.1| - 5.5e-79 265.7 0.0 6.4e-79 265.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284165053|ref|YP_003403332.1| - 3.7e-16 59.9 3.2 7.8e-16 58.8 0.1 2.9 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.6 gi|284165054|ref|YP_003403333.1| - 3.6e-41 141.1 6.6 5.6e-41 140.5 6.6 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284165054|ref|YP_003403333.1| - 5.2e-06 26.7 0.0 2e-05 24.8 0.0 2.0 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|284165055|ref|YP_003403334.1| - 1.9e-42 145.3 16.7 2.4e-42 145.0 16.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Cohesin PF00963.18 gi|284165056|ref|YP_003403335.1| - 1.8e-08 34.7 3.8 3.1e-08 34.0 3.8 1.3 1 0 0 1 1 1 1 Cohesin domain Iron_transport PF10634.9 gi|284165057|ref|YP_003403336.1| - 1.6e-05 25.1 0.0 0.00086 19.5 0.0 2.2 2 0 0 2 2 2 2 Fe2+ transport protein TAT_signal PF10518.9 gi|284165057|ref|YP_003403336.1| - 0.0012 18.7 0.8 0.0019 17.9 0.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.9 gi|284165058|ref|YP_003403337.1| - 0.0025 17.6 0.9 0.0025 17.6 0.9 1.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ECH_1 PF00378.20 gi|284165059|ref|YP_003403338.1| - 1.1e-55 188.7 0.0 1.4e-55 188.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284165059|ref|YP_003403338.1| - 9.5e-14 51.6 0.0 1.6e-13 50.9 0.0 1.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Beta_helix PF13229.6 gi|284165060|ref|YP_003403339.1| - 2.7e-28 98.8 2.9 8.8e-28 97.1 1.6 2.1 2 0 0 2 2 2 1 Right handed beta helix region NosD PF05048.13 gi|284165060|ref|YP_003403339.1| - 1.1e-08 34.7 2.8 4.8e-06 26.0 0.2 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) TAT_signal PF10518.9 gi|284165060|ref|YP_003403339.1| - 0.0085 15.9 5.2 0.023 14.5 5.2 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DnaJ PF00226.31 gi|284165061|ref|YP_003403340.1| - 7.4e-20 70.8 0.3 1.1e-19 70.3 0.3 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|284165061|ref|YP_003403340.1| - 0.073 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein SRP-alpha_N PF04086.13 gi|284165061|ref|YP_003403340.1| - 1 9.2 18.8 1.4 8.8 18.8 1.3 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal CDC45 PF02724.14 gi|284165061|ref|YP_003403340.1| - 1.5 7.0 15.3 2.2 6.5 15.3 1.2 1 0 0 1 1 1 0 CDC45-like protein DUF572 PF04502.13 gi|284165061|ref|YP_003403340.1| - 4.8 6.7 11.6 6.6 6.2 11.6 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) Hamartin PF04388.12 gi|284165061|ref|YP_003403340.1| - 6 5.4 9.6 7.1 5.2 9.6 1.0 1 0 0 1 1 1 0 Hamartin protein TPP_enzyme_N PF02776.18 gi|284165062|ref|YP_003403341.1| - 2.3e-35 121.7 0.1 5.3e-35 120.6 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|284165062|ref|YP_003403341.1| - 8.4e-07 28.9 0.0 1.6e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|284165062|ref|YP_003403341.1| - 0.029 14.1 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Middle domain of thiamine pyrophosphate Chorismate_bind PF00425.18 gi|284165063|ref|YP_003403342.1| - 3.4e-74 249.6 0.0 4.2e-74 249.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.19 gi|284165064|ref|YP_003403343.1| - 7e-38 129.9 0.0 8.7e-38 129.6 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain RHH_1 PF01402.21 gi|284165066|ref|YP_003403345.1| - 0.0031 17.4 0.1 0.0042 17.0 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|284165066|ref|YP_003403345.1| - 0.014 15.2 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator YjbE PF11106.8 gi|284165067|ref|YP_003403346.1| - 0.13 12.5 1.5 0.16 12.2 1.5 1.3 1 1 0 1 1 1 0 Exopolysaccharide production protein YjbE TAT_signal PF10518.9 gi|284165069|ref|YP_003403348.1| - 0.0021 17.8 2.9 0.0021 17.8 2.9 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence His_biosynth PF00977.21 gi|284165070|ref|YP_003403349.1| - 6e-81 271.3 0.1 6.9e-81 271.1 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|284165070|ref|YP_003403349.1| - 5.7e-09 35.5 0.0 5.5e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|284165070|ref|YP_003403349.1| - 1.1e-07 31.6 0.3 0.00022 20.8 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|284165070|ref|YP_003403349.1| - 1.2e-05 24.8 0.2 0.0056 16.0 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|284165070|ref|YP_003403349.1| - 0.00012 21.5 0.1 0.00028 20.4 0.0 1.5 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator DHO_dh PF01180.21 gi|284165070|ref|YP_003403349.1| - 0.0019 17.5 0.2 0.0066 15.7 0.0 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|284165070|ref|YP_003403349.1| - 0.0061 15.9 0.2 0.18 11.1 0.0 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase Glu_synthase PF01645.17 gi|284165070|ref|YP_003403349.1| - 0.023 13.8 0.0 0.036 13.2 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase IMPDH PF00478.25 gi|284165070|ref|YP_003403349.1| - 0.032 13.2 0.5 0.046 12.7 0.0 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|284165070|ref|YP_003403349.1| - 0.037 13.5 0.1 0.06 12.8 0.1 1.3 1 0 0 1 1 1 0 PcrB family FMN_dh PF01070.18 gi|284165070|ref|YP_003403349.1| - 0.051 12.6 0.2 0.1 11.6 0.2 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase zinc_ribbon_2 PF13240.6 gi|284165071|ref|YP_003403350.1| - 1.1e-06 28.2 19.2 0.00035 20.2 5.7 2.5 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|284165071|ref|YP_003403350.1| - 2.3e-05 24.5 2.0 0.023 14.9 0.1 2.4 2 0 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|284165071|ref|YP_003403350.1| - 0.038 14.0 7.0 1.8 8.7 1.6 2.3 2 0 0 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|284165071|ref|YP_003403350.1| - 0.059 13.4 6.8 0.46 10.5 0.5 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284165071|ref|YP_003403350.1| - 0.096 12.8 12.2 0.22 11.7 2.1 2.9 2 2 0 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|284165071|ref|YP_003403350.1| - 0.27 11.1 0.1 0.27 11.1 0.1 2.9 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS TackOD1 PF18551.1 gi|284165071|ref|YP_003403350.1| - 4.2 7.0 6.6 0.54 9.9 0.5 2.0 1 1 0 2 2 2 0 Thaumarchaeal output domain 1 Cytochrom_c3_2 PF14537.6 gi|284165071|ref|YP_003403350.1| - 5.2 7.6 10.2 16 6.1 6.4 2.4 1 1 1 2 2 2 0 Cytochrome c3 DUF1451 PF07295.11 gi|284165071|ref|YP_003403350.1| - 5.6 7.0 6.3 13 5.8 1.5 2.4 2 0 0 2 2 2 0 Zinc-ribbon containing domain RNA_pol_L_2 PF13656.6 gi|284165072|ref|YP_003403351.1| - 6.4e-17 61.1 0.0 7.5e-17 60.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|284165072|ref|YP_003403351.1| - 6.6e-07 28.7 0.0 1.4e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Rhomboid PF01694.22 gi|284165073|ref|YP_003403352.1| - 1.9e-07 31.2 14.0 1.9e-07 31.2 14.0 2.8 2 1 0 2 2 2 1 Rhomboid family SKG6 PF08693.10 gi|284165073|ref|YP_003403352.1| - 0.0054 16.1 3.3 0.0054 16.1 3.3 5.9 7 0 0 7 7 7 1 Transmembrane alpha-helix domain ABC_tran PF00005.27 gi|284165074|ref|YP_003403353.1| - 9.6e-33 113.6 0.0 1.4e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|284165074|ref|YP_003403353.1| - 1.6e-06 27.7 0.2 3.2e-06 26.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284165074|ref|YP_003403353.1| - 1.2e-05 24.9 0.0 5.2e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|284165074|ref|YP_003403353.1| - 0.0015 18.4 0.4 0.54 10.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284165074|ref|YP_003403353.1| - 0.0019 18.6 1.5 0.0034 17.8 1.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|284165074|ref|YP_003403353.1| - 0.0071 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI MeaB PF03308.16 gi|284165074|ref|YP_003403353.1| - 0.0075 15.3 0.2 0.013 14.5 0.2 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|284165074|ref|YP_003403353.1| - 0.03 14.1 0.1 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|284165074|ref|YP_003403353.1| - 0.031 13.3 0.4 0.059 12.4 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|284165074|ref|YP_003403353.1| - 0.043 14.3 0.0 0.063 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|284165074|ref|YP_003403353.1| - 0.044 13.5 2.0 0.25 11.0 2.0 2.0 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|284165074|ref|YP_003403353.1| - 0.049 13.5 0.1 0.73 9.7 0.0 2.2 2 0 0 2 2 2 0 NTPase MukB PF04310.12 gi|284165074|ref|YP_003403353.1| - 0.069 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal APS_kinase PF01583.20 gi|284165074|ref|YP_003403353.1| - 0.083 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|284165074|ref|YP_003403353.1| - 0.084 12.8 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|284165074|ref|YP_003403353.1| - 0.12 13.0 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|284165075|ref|YP_003403354.1| - 4.8e-05 23.7 11.3 0.00021 21.7 2.9 3.1 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|284165076|ref|YP_003403355.1| - 1.1e-18 68.3 7.4 1.1e-18 68.3 7.4 1.8 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|284165076|ref|YP_003403355.1| - 1.6e-08 34.9 2.4 1.6e-08 34.9 2.4 2.3 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|284165076|ref|YP_003403355.1| - 0.011 14.6 1.7 0.011 14.6 1.7 2.1 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG COX14 PF14880.6 gi|284165076|ref|YP_003403355.1| - 0.4 10.6 0.1 0.4 10.6 0.1 2.7 3 0 0 3 3 3 0 Cytochrome oxidase c assembly PrmA PF06325.13 gi|284165077|ref|YP_003403356.1| - 3e-10 40.0 0.6 4.4e-10 39.4 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|284165077|ref|YP_003403356.1| - 1.5e-07 32.1 0.0 3.9e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284165077|ref|YP_003403356.1| - 2.5e-07 30.4 0.1 1.8e-06 27.6 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|284165077|ref|YP_003403356.1| - 1.2e-06 28.4 0.0 2.4e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284165077|ref|YP_003403356.1| - 1.7e-05 25.4 0.0 3.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|284165077|ref|YP_003403356.1| - 0.00099 18.8 0.0 0.004 16.9 0.0 2.0 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|284165077|ref|YP_003403356.1| - 0.0058 16.3 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|284165077|ref|YP_003403356.1| - 0.012 15.5 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284165077|ref|YP_003403356.1| - 0.064 14.0 0.0 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|284165077|ref|YP_003403356.1| - 0.08 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|284165077|ref|YP_003403356.1| - 0.093 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|284165077|ref|YP_003403356.1| - 0.2 11.7 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain AP_endonuc_2 PF01261.24 gi|284165078|ref|YP_003403357.1| - 0.015 14.8 0.1 0.019 14.4 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-TFIIB PF13453.6 gi|284165079|ref|YP_003403358.1| - 1.2e-06 27.7 2.2 1.8e-06 27.2 2.2 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|284165079|ref|YP_003403358.1| - 0.00019 21.2 1.0 0.00035 20.3 1.0 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS UPF0547 PF10571.9 gi|284165079|ref|YP_003403358.1| - 0.00047 20.2 2.6 0.022 14.8 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|284165079|ref|YP_003403358.1| - 0.0039 17.3 1.9 0.0077 16.3 1.9 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284165079|ref|YP_003403358.1| - 0.015 14.7 3.0 0.19 11.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|284165079|ref|YP_003403358.1| - 0.027 14.9 3.1 2.2 8.7 0.1 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|284165079|ref|YP_003403358.1| - 0.029 14.4 0.4 0.039 14.0 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon TRAF6_Z2 PF18048.1 gi|284165079|ref|YP_003403358.1| - 0.062 13.4 1.6 0.31 11.2 0.3 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 ASCH PF04266.14 gi|284165079|ref|YP_003403358.1| - 0.081 13.5 0.0 0.091 13.3 0.0 1.1 1 0 0 1 1 1 0 ASCH domain Zn_Tnp_IS1 PF03811.13 gi|284165079|ref|YP_003403358.1| - 0.093 12.5 1.6 5.4 6.8 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|284165079|ref|YP_003403358.1| - 0.1 12.5 0.2 0.14 12.1 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|284165079|ref|YP_003403358.1| - 0.12 12.4 4.7 0.94 9.5 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|284165079|ref|YP_003403358.1| - 0.12 12.4 0.2 0.14 12.2 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AbiGi PF10899.8 gi|284165079|ref|YP_003403358.1| - 0.16 11.8 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Putative abortive phage resistance protein AbiGi, antitoxin zf_Rg PF17915.1 gi|284165079|ref|YP_003403358.1| - 0.24 10.8 3.2 2.4 7.6 0.2 2.2 1 1 1 2 2 2 0 Reverse gyrase zinc finger Anti-TRAP PF15777.5 gi|284165079|ref|YP_003403358.1| - 0.47 10.5 3.4 0.86 9.6 3.4 1.6 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_9 PF14369.6 gi|284165079|ref|YP_003403358.1| - 0.51 10.6 5.7 15 6.0 5.6 2.2 1 1 0 1 1 1 0 zinc-ribbon CpXC PF14353.6 gi|284165079|ref|YP_003403358.1| - 0.82 9.7 2.6 4.5 7.3 2.6 1.9 1 1 0 1 1 1 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|284165079|ref|YP_003403358.1| - 0.86 9.2 4.1 12 5.5 0.2 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Actin PF00022.19 gi|284165080|ref|YP_003403359.1| - 0.00071 18.3 0.0 0.31 9.6 0.0 2.2 2 0 0 2 2 2 2 Actin FtsA PF14450.6 gi|284165080|ref|YP_003403359.1| - 0.011 16.1 0.0 0.065 13.7 0.0 2.0 2 0 0 2 2 2 0 Cell division protein FtsA Aegerolysin PF06355.13 gi|284165081|ref|YP_003403360.1| - 0.077 13.1 0.2 0.17 12.0 0.1 1.5 1 1 0 1 1 1 0 Aegerolysin Diphthamide_syn PF01866.17 gi|284165082|ref|YP_003403361.1| - 4.6e-78 262.7 0.0 5.6e-78 262.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|284165082|ref|YP_003403361.1| - 0.045 14.4 0.0 0.98 10.1 0.0 2.4 1 1 0 2 2 2 0 GTP-binding GTPase N-terminal CCB1 PF12046.8 gi|284165082|ref|YP_003403361.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B HTH_12 PF08461.10 gi|284165083|ref|YP_003403362.1| - 0.0029 17.5 0.1 0.0072 16.3 0.1 1.7 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|284165083|ref|YP_003403362.1| - 0.0093 16.0 6.0 3.1 7.9 2.5 3.2 2 1 0 2 2 2 2 Helix-turn-helix domain Lactamase_B_2 PF12706.7 gi|284165084|ref|YP_003403363.1| - 5.5e-19 68.5 0.3 7.5e-19 68.0 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|284165084|ref|YP_003403363.1| - 4.9e-13 49.3 0.1 7.1e-13 48.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284165084|ref|YP_003403363.1| - 0.044 13.8 7.7 0.11 12.4 7.7 1.7 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily DUF3038 PF11237.8 gi|284165084|ref|YP_003403363.1| - 0.094 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) DUF1664 PF07889.12 gi|284165085|ref|YP_003403364.1| - 1.7e-06 28.1 9.2 5.4e-05 23.2 2.8 2.9 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|284165085|ref|YP_003403364.1| - 2.8e-06 26.3 0.5 4.8e-06 25.5 0.5 1.3 1 0 0 1 1 1 1 AAA domain CENP-F_leu_zip PF10473.9 gi|284165085|ref|YP_003403364.1| - 3.5e-06 27.1 6.1 4.1e-06 26.9 4.5 1.9 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF724 PF05266.14 gi|284165085|ref|YP_003403364.1| - 8.7e-06 25.7 1.0 0.047 13.5 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF724) FPP PF05911.11 gi|284165085|ref|YP_003403364.1| - 1.1e-05 24.0 2.1 1.7e-05 23.3 2.1 1.3 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Laminin_II PF06009.12 gi|284165085|ref|YP_003403364.1| - 2.4e-05 24.4 3.8 0.00016 21.7 3.7 2.3 1 1 1 2 2 2 1 Laminin Domain II Leu_zip PF15294.6 gi|284165085|ref|YP_003403364.1| - 2.6e-05 23.9 1.6 4.9e-05 23.0 1.6 1.4 1 0 0 1 1 1 1 Leucine zipper Spc7 PF08317.11 gi|284165085|ref|YP_003403364.1| - 2.7e-05 23.2 5.3 6.6e-05 21.9 3.7 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|284165085|ref|YP_003403364.1| - 2.9e-05 24.4 12.6 0.0034 17.7 2.6 4.0 2 1 1 3 3 2 2 Flagella accessory protein C (FlaC) PspA_IM30 PF04012.12 gi|284165085|ref|YP_003403364.1| - 3.3e-05 23.6 1.6 9.7e-05 22.0 1.4 1.9 1 1 0 1 1 1 1 PspA/IM30 family NPV_P10 PF05531.12 gi|284165085|ref|YP_003403364.1| - 4.7e-05 23.8 18.6 0.65 10.5 13.4 4.4 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein LPP PF04728.13 gi|284165085|ref|YP_003403364.1| - 0.00013 22.2 20.9 0.0034 17.7 0.5 5.7 3 1 3 6 6 4 2 Lipoprotein leucine-zipper XhlA PF10779.9 gi|284165085|ref|YP_003403364.1| - 0.00014 22.0 13.1 0.00035 20.7 0.9 4.1 1 1 3 4 4 4 3 Haemolysin XhlA Baculo_PEP_C PF04513.12 gi|284165085|ref|YP_003403364.1| - 0.00015 21.8 2.6 0.0028 17.7 2.6 2.3 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.6 gi|284165085|ref|YP_003403364.1| - 0.00018 20.9 0.4 0.00032 20.1 0.4 1.4 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DUF948 PF06103.11 gi|284165085|ref|YP_003403364.1| - 0.00036 20.7 9.0 0.0032 17.7 3.9 2.8 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF948) ATG16 PF08614.11 gi|284165085|ref|YP_003403364.1| - 0.00039 20.7 13.0 0.0018 18.6 12.9 2.2 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) ADIP PF11559.8 gi|284165085|ref|YP_003403364.1| - 0.00052 20.1 0.1 1.2 9.3 0.1 2.3 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding MCPsignal PF00015.21 gi|284165085|ref|YP_003403364.1| - 0.00064 19.6 2.0 0.0018 18.1 2.0 1.8 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_I PF06008.14 gi|284165085|ref|YP_003403364.1| - 0.00098 18.9 1.4 0.015 15.0 0.3 2.2 1 1 1 2 2 2 1 Laminin Domain I HsbA PF12296.8 gi|284165085|ref|YP_003403364.1| - 0.00098 19.5 0.8 0.0056 17.1 0.7 2.3 2 0 0 2 2 1 1 Hydrophobic surface binding protein A MscS_porin PF12795.7 gi|284165085|ref|YP_003403364.1| - 0.001 18.7 0.2 0.0027 17.3 0.2 1.7 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF3450 PF11932.8 gi|284165085|ref|YP_003403364.1| - 0.0014 18.0 3.3 0.0021 17.4 0.4 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) TMF_TATA_bd PF12325.8 gi|284165085|ref|YP_003403364.1| - 0.0015 18.7 6.8 0.0015 18.7 6.8 3.1 2 1 0 2 2 1 1 TATA element modulatory factor 1 TATA binding COG2 PF06148.11 gi|284165085|ref|YP_003403364.1| - 0.0018 18.3 5.7 0.22 11.6 0.2 2.7 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 EzrA PF06160.12 gi|284165085|ref|YP_003403364.1| - 0.0019 16.5 5.2 1.2 7.3 0.7 1.9 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Nsp1_C PF05064.13 gi|284165085|ref|YP_003403364.1| - 0.0019 18.0 5.3 0.0027 17.5 3.2 2.3 1 1 2 3 3 2 2 Nsp1-like C-terminal region Cast PF10174.9 gi|284165085|ref|YP_003403364.1| - 0.002 16.5 5.5 0.0028 16.0 5.5 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF4201 PF13870.6 gi|284165085|ref|YP_003403364.1| - 0.003 17.3 0.1 0.0047 16.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) COG6 PF06419.11 gi|284165085|ref|YP_003403364.1| - 0.0032 15.8 1.0 0.14 10.3 0.2 2.1 1 1 1 2 2 2 1 Conserved oligomeric complex COG6 TPR_MLP1_2 PF07926.12 gi|284165085|ref|YP_003403364.1| - 0.0033 17.5 1.3 0.013 15.5 1.2 2.2 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF4795 PF16043.5 gi|284165085|ref|YP_003403364.1| - 0.004 16.8 5.0 0.17 11.5 4.9 2.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4795) Prefoldin_2 PF01920.20 gi|284165085|ref|YP_003403364.1| - 0.0041 17.0 3.9 1.3 9.0 3.9 3.2 1 1 0 1 1 1 1 Prefoldin subunit ABC_tran_CTD PF16326.5 gi|284165085|ref|YP_003403364.1| - 0.0046 17.2 11.9 0.34 11.2 2.7 4.3 1 1 2 4 4 3 1 ABC transporter C-terminal domain BLOC1_2 PF10046.9 gi|284165085|ref|YP_003403364.1| - 0.0049 17.2 6.0 0.09 13.1 1.0 3.1 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.21 gi|284165085|ref|YP_003403364.1| - 0.0062 17.0 6.0 0.46 11.0 1.0 2.8 1 1 1 2 2 2 1 Spectrin repeat DUF3552 PF12072.8 gi|284165085|ref|YP_003403364.1| - 0.0063 16.0 1.5 0.012 15.1 0.9 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) TMF_DNA_bd PF12329.8 gi|284165085|ref|YP_003403364.1| - 0.007 16.3 1.0 2.2 8.3 0.1 3.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF2730 PF10805.8 gi|284165085|ref|YP_003403364.1| - 0.0076 16.3 6.1 0.057 13.5 2.1 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) TACC_C PF05010.14 gi|284165085|ref|YP_003403364.1| - 0.0082 15.9 0.6 0.016 15.0 0.6 1.4 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Tektin PF03148.14 gi|284165085|ref|YP_003403364.1| - 0.0086 14.9 2.3 0.016 14.0 2.3 1.4 1 0 0 1 1 1 1 Tektin family TolA_bind_tri PF16331.5 gi|284165085|ref|YP_003403364.1| - 0.01 15.9 2.4 3.5 7.8 0.1 2.9 1 1 2 3 3 3 0 TolA binding protein trimerisation SlyX PF04102.12 gi|284165085|ref|YP_003403364.1| - 0.013 16.1 8.4 1.8 9.2 0.7 3.2 1 1 2 3 3 3 0 SlyX Sec34 PF04136.15 gi|284165085|ref|YP_003403364.1| - 0.014 15.3 1.1 2.2 8.2 0.1 2.4 1 1 1 2 2 2 0 Sec34-like family Fez1 PF06818.15 gi|284165085|ref|YP_003403364.1| - 0.018 15.5 1.3 0.018 15.5 1.3 2.3 2 1 0 2 2 1 0 Fez1 Filament PF00038.21 gi|284165085|ref|YP_003403364.1| - 0.018 14.6 6.0 0.092 12.3 5.4 2.1 1 1 1 2 2 2 0 Intermediate filament protein PI3K_P85_iSH2 PF16454.5 gi|284165085|ref|YP_003403364.1| - 0.019 14.6 0.4 0.7 9.5 0.4 2.5 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HMMR_N PF15905.5 gi|284165085|ref|YP_003403364.1| - 0.022 14.2 2.4 0.04 13.4 2.4 1.4 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal BST2 PF16716.5 gi|284165085|ref|YP_003403364.1| - 0.023 15.3 1.3 1.2 9.8 0.0 2.5 1 1 0 2 2 2 0 Bone marrow stromal antigen 2 DUF812 PF05667.11 gi|284165085|ref|YP_003403364.1| - 0.024 13.6 5.1 0.19 10.6 5.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF4618 PF15397.6 gi|284165085|ref|YP_003403364.1| - 0.031 13.7 0.2 0.88 8.9 0.6 2.8 2 1 0 2 2 1 0 Domain of unknown function (DUF4618) YabA PF06156.13 gi|284165085|ref|YP_003403364.1| - 0.034 14.8 0.8 1.9 9.2 0.1 2.7 1 1 1 2 2 2 0 Initiation control protein YabA Mod_r PF07200.13 gi|284165085|ref|YP_003403364.1| - 0.035 14.2 4.4 0.9 9.6 0.2 3.1 2 1 1 3 3 2 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.22 gi|284165085|ref|YP_003403364.1| - 0.038 14.2 5.1 2.4 8.4 2.5 3.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.10 gi|284165085|ref|YP_003403364.1| - 0.04 14.1 0.2 0.11 12.7 0.2 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|284165085|ref|YP_003403364.1| - 0.057 13.5 5.2 0.17 12.0 5.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FH2 PF02181.23 gi|284165085|ref|YP_003403364.1| - 0.065 12.4 2.3 0.34 10.0 2.3 2.0 1 1 0 1 1 1 0 Formin Homology 2 Domain ERM PF00769.19 gi|284165085|ref|YP_003403364.1| - 0.066 13.0 0.1 0.066 13.0 0.1 2.6 2 1 2 4 4 2 0 Ezrin/radixin/moesin family DUF16 PF01519.16 gi|284165085|ref|YP_003403364.1| - 0.067 13.7 6.8 0.046 14.2 2.6 2.6 2 1 1 3 3 2 0 Protein of unknown function DUF16 TMPIT PF07851.13 gi|284165085|ref|YP_003403364.1| - 0.073 12.3 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 TMPIT-like protein Hemagglutinin PF00509.18 gi|284165085|ref|YP_003403364.1| - 0.097 11.1 8.8 0.78 8.1 2.9 2.2 1 1 1 2 2 2 0 Haemagglutinin DivIC PF04977.15 gi|284165085|ref|YP_003403364.1| - 0.099 12.4 6.1 1.6 8.6 0.3 3.3 1 1 3 4 4 4 0 Septum formation initiator HOOK PF05622.12 gi|284165085|ref|YP_003403364.1| - 0.12 10.5 7.7 0.17 10.0 7.7 1.2 1 0 0 1 1 1 0 HOOK protein CENP-Q PF13094.6 gi|284165085|ref|YP_003403364.1| - 0.14 12.4 0.3 0.14 12.4 0.3 3.3 2 2 1 3 3 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Bacillus_HBL PF05791.11 gi|284165085|ref|YP_003403364.1| - 0.15 11.9 1.3 0.58 10.0 1.3 1.9 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Atg14 PF10186.9 gi|284165085|ref|YP_003403364.1| - 0.15 11.1 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|284165085|ref|YP_003403364.1| - 0.15 9.9 0.3 0.26 9.2 0.3 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Golgin_A5 PF09787.9 gi|284165085|ref|YP_003403364.1| - 0.15 11.5 5.8 1 8.7 5.3 1.9 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF5082 PF16888.5 gi|284165085|ref|YP_003403364.1| - 0.16 12.2 2.1 0.93 9.8 1.9 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Cluap1 PF10234.9 gi|284165085|ref|YP_003403364.1| - 0.17 11.2 2.1 0.9 8.9 2.1 2.0 1 1 1 2 2 2 0 Clusterin-associated protein-1 ISG65-75 PF11727.8 gi|284165085|ref|YP_003403364.1| - 0.19 10.9 3.0 0.75 9.0 1.4 2.3 1 1 2 3 3 3 0 Invariant surface glycoprotein Snapin_Pallidin PF14712.6 gi|284165085|ref|YP_003403364.1| - 0.2 12.1 1.1 13 6.3 0.2 2.6 1 1 1 2 2 2 0 Snapin/Pallidin DUF2203 PF09969.9 gi|284165085|ref|YP_003403364.1| - 0.23 12.2 3.3 6.4 7.5 0.4 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Rootletin PF15035.6 gi|284165085|ref|YP_003403364.1| - 0.23 11.5 2.4 0.7 9.9 2.2 1.9 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Lectin_N PF03954.14 gi|284165085|ref|YP_003403364.1| - 0.24 11.2 0.2 0.85 9.4 0.2 2.0 1 1 1 2 2 1 0 Hepatic lectin, N-terminal domain Prefoldin PF02996.17 gi|284165085|ref|YP_003403364.1| - 0.24 11.3 2.9 13 5.8 2.4 3.5 1 1 1 2 2 2 0 Prefoldin subunit DLP_helical PF18709.1 gi|284165085|ref|YP_003403364.1| - 0.27 10.4 2.1 3.6 6.7 0.6 2.0 1 1 1 2 2 2 0 Dynamin-like helical domain End3 PF12761.7 gi|284165085|ref|YP_003403364.1| - 0.4 10.8 6.9 24 5.0 6.4 3.1 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 CorA PF01544.18 gi|284165085|ref|YP_003403364.1| - 0.43 9.9 7.7 1.1 8.6 7.7 1.7 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein CLZ PF16526.5 gi|284165085|ref|YP_003403364.1| - 0.43 11.0 11.6 15 6.0 0.3 4.9 2 1 3 5 5 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF677 PF05055.12 gi|284165085|ref|YP_003403364.1| - 0.45 9.3 8.5 0.31 9.9 5.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF677) Ax_dynein_light PF10211.9 gi|284165085|ref|YP_003403364.1| - 0.51 10.3 1.5 12 5.7 0.1 2.8 1 1 1 2 2 2 0 Axonemal dynein light chain DUF2353 PF09789.9 gi|284165085|ref|YP_003403364.1| - 0.56 9.5 4.7 1.2 8.5 4.7 1.5 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) KASH_CCD PF14662.6 gi|284165085|ref|YP_003403364.1| - 0.59 9.9 5.3 0.16 11.8 2.2 1.6 2 0 0 2 2 1 0 Coiled-coil region of CCDC155 or KASH FUSC PF04632.12 gi|284165085|ref|YP_003403364.1| - 0.75 8.3 3.5 0.41 9.1 1.4 1.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family DHR10 PF18595.1 gi|284165085|ref|YP_003403364.1| - 0.88 9.6 7.3 3.3 7.8 0.5 2.8 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain SKA1 PF07160.12 gi|284165085|ref|YP_003403364.1| - 0.93 9.3 5.1 7.7 6.3 0.0 2.8 2 1 1 3 3 2 0 Spindle and kinetochore-associated protein 1 Vps53_N PF04100.12 gi|284165085|ref|YP_003403364.1| - 2.1 7.2 6.7 3.9 6.3 0.4 2.0 1 1 1 2 2 2 0 Vps53-like, N-terminal DUF1515 PF07439.11 gi|284165085|ref|YP_003403364.1| - 2.8 8.0 11.0 1 9.4 2.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Tropomyosin_1 PF12718.7 gi|284165085|ref|YP_003403364.1| - 3.2 7.9 25.5 0.14 12.3 5.6 3.4 2 1 1 3 3 2 0 Tropomyosin like Jnk-SapK_ap_N PF09744.9 gi|284165085|ref|YP_003403364.1| - 3.4 7.9 13.0 0.42 10.8 5.0 3.2 3 1 0 3 3 2 0 JNK_SAPK-associated protein-1 Wtap PF17098.5 gi|284165085|ref|YP_003403364.1| - 5 7.0 7.8 6.5 6.7 0.5 3.0 2 1 1 3 3 2 0 WTAP/Mum2p family DivIVA PF05103.13 gi|284165085|ref|YP_003403364.1| - 5.9 7.0 8.1 20 5.2 0.5 3.2 1 1 2 3 3 3 0 DivIVA protein DUF4164 PF13747.6 gi|284165085|ref|YP_003403364.1| - 6.5 7.1 17.3 0.4 11.0 4.7 3.4 1 1 1 3 3 2 0 Domain of unknown function (DUF4164) AIP3 PF03915.13 gi|284165085|ref|YP_003403364.1| - 6.6 5.7 17.6 0.43 9.6 3.4 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 DUF4559 PF15112.6 gi|284165085|ref|YP_003403364.1| - 7.2 6.2 6.7 1.8 8.2 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) HSBP1 PF06825.12 gi|284165085|ref|YP_003403364.1| - 8.7 6.3 16.7 15 5.5 3.2 4.1 3 1 1 4 4 3 0 Heat shock factor binding protein 1 U-box PF04564.15 gi|284165086|ref|YP_003403365.1| - 0.012 15.8 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 U-box domain Lambda_CIII PF02061.16 gi|284165086|ref|YP_003403365.1| - 0.12 12.5 0.3 0.33 11.1 0.1 1.9 2 0 0 2 2 2 0 Lambda Phage CIII Phage_integrase PF00589.22 gi|284165087|ref|YP_003403366.1| - 1.5e-14 54.2 0.0 3.2e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|284165087|ref|YP_003403366.1| - 3.1e-08 33.8 0.6 7.7e-08 32.5 0.6 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|284165087|ref|YP_003403366.1| - 4.6e-05 23.8 0.5 0.00011 22.6 0.5 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain SF3A3 PF16837.5 gi|284165087|ref|YP_003403366.1| - 0.058 13.9 0.9 3.1 8.4 0.7 2.4 1 1 1 2 2 2 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 Phage_integr_3 PF16795.5 gi|284165087|ref|YP_003403366.1| - 0.079 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Archaeal phage integrase zf-C2H2_6 PF13912.6 gi|284165089|ref|YP_003403368.1| - 0.002 18.1 8.2 0.29 11.2 1.0 2.8 3 0 0 3 3 3 2 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|284165089|ref|YP_003403368.1| - 0.0029 18.0 6.5 0.17 12.4 0.4 3.3 3 0 0 3 3 3 1 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|284165089|ref|YP_003403368.1| - 0.0038 17.1 2.9 0.18 11.7 0.3 2.3 2 0 0 2 2 2 1 zinc-finger of a C2HC-type HNH_5 PF14279.6 gi|284165089|ref|YP_003403368.1| - 0.0071 16.2 2.9 0.32 10.9 0.8 2.3 1 1 0 2 2 2 1 HNH endonuclease FYVE PF01363.21 gi|284165089|ref|YP_003403368.1| - 0.012 15.8 2.8 0.013 15.6 2.8 1.3 1 0 0 1 1 1 0 FYVE zinc finger GATA PF00320.27 gi|284165089|ref|YP_003403368.1| - 0.024 14.2 2.8 0.092 12.4 2.8 2.0 1 1 0 1 1 1 0 GATA zinc finger Rhodanese_C PF12368.8 gi|284165089|ref|YP_003403368.1| - 0.041 14.3 7.3 1.4 9.3 8.2 2.1 1 1 1 2 2 2 0 Rhodanase C-terminal NRBF2_MIT PF17169.4 gi|284165089|ref|YP_003403368.1| - 0.071 13.3 0.0 0.089 13.0 0.0 1.1 1 0 0 1 1 1 0 MIT domain of nuclear receptor-binding factor 2 zf-C2H2_4 PF13894.6 gi|284165089|ref|YP_003403368.1| - 0.12 13.3 7.3 2.4 9.2 1.4 2.9 3 0 0 3 3 3 0 C2H2-type zinc finger Elf1 PF05129.13 gi|284165089|ref|YP_003403368.1| - 0.3 11.1 4.4 2.4 8.3 4.4 2.1 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf_UBZ PF18439.1 gi|284165089|ref|YP_003403368.1| - 0.39 10.4 6.0 1.1 9.0 0.2 2.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF983 PF06170.12 gi|284165089|ref|YP_003403368.1| - 0.48 10.9 1.2 8.5 6.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF983) C1_2 PF03107.16 gi|284165089|ref|YP_003403368.1| - 0.77 10.1 9.0 0.067 13.5 2.7 2.0 1 1 1 2 2 2 0 C1 domain HypA PF01155.19 gi|284165089|ref|YP_003403368.1| - 0.82 9.7 6.6 22 5.1 6.6 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|284165089|ref|YP_003403368.1| - 6.3 6.8 8.1 13 5.7 0.1 3.1 3 1 0 3 3 3 0 HIT zinc finger DUF21 PF01595.20 gi|284165090|ref|YP_003403369.1| - 2.5e-30 105.5 0.2 4e-30 104.8 0.2 1.3 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|284165090|ref|YP_003403369.1| - 1.4e-12 47.8 0.3 8.2e-10 39.0 0.0 2.4 2 0 0 2 2 2 2 CBS domain Lyase_1 PF00206.20 gi|284165091|ref|YP_003403370.1| - 1.4e-108 363.0 0.1 1.9e-108 362.6 0.1 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|284165091|ref|YP_003403370.1| - 1.1e-22 80.2 1.8 2.8e-22 78.9 0.2 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus Trm56 PF01994.16 gi|284165091|ref|YP_003403370.1| - 0.055 13.4 0.0 0.62 10.0 0.0 2.3 2 0 0 2 2 2 0 tRNA ribose 2'-O-methyltransferase, aTrm56 SBP_bac_8 PF13416.6 gi|284165092|ref|YP_003403371.1| - 9.4e-20 71.6 2.7 9.4e-20 71.6 2.7 1.5 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284165092|ref|YP_003403371.1| - 9.9e-10 38.9 4.0 2.4e-09 37.6 4.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|284165093|ref|YP_003403372.1| - 6.2e-20 71.7 13.7 6.2e-20 71.7 13.7 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284165094|ref|YP_003403373.1| - 2.9e-16 59.7 17.6 2.9e-16 59.7 17.6 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component Phage_holin_3_5 PF16085.5 gi|284165094|ref|YP_003403373.1| - 0.065 13.4 0.1 0.065 13.4 0.1 1.8 2 0 0 2 2 2 0 Bacteriophage holin Hol, superfamily III ABC_tran PF00005.27 gi|284165095|ref|YP_003403374.1| - 2.9e-33 115.3 0.0 5.2e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|284165095|ref|YP_003403374.1| - 2.4e-10 40.4 1.7 6e-10 39.2 0.7 2.2 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|284165095|ref|YP_003403374.1| - 3.2e-09 37.5 0.1 2e-08 34.9 0.0 2.5 2 0 0 2 2 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|284165095|ref|YP_003403374.1| - 2.1e-06 27.8 0.0 0.018 14.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|284165095|ref|YP_003403374.1| - 8.4e-06 26.0 0.6 2.5e-05 24.5 0.6 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|284165095|ref|YP_003403374.1| - 0.00013 21.4 0.5 0.0012 18.3 0.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|284165095|ref|YP_003403374.1| - 0.00063 20.3 0.2 0.0056 17.2 0.1 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_22 PF13401.6 gi|284165095|ref|YP_003403374.1| - 0.00095 19.5 0.3 0.0025 18.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284165095|ref|YP_003403374.1| - 0.0012 18.8 0.1 0.0028 17.6 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|284165095|ref|YP_003403374.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|284165095|ref|YP_003403374.1| - 0.0019 18.0 0.0 0.0053 16.5 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|284165095|ref|YP_003403374.1| - 0.0022 18.4 0.5 0.0069 16.8 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|284165095|ref|YP_003403374.1| - 0.012 16.0 0.0 0.082 13.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|284165095|ref|YP_003403374.1| - 0.013 15.2 0.0 0.031 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284165095|ref|YP_003403374.1| - 0.014 15.9 0.1 0.099 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|284165095|ref|YP_003403374.1| - 0.041 13.3 0.0 3.2 7.2 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein MIT_C PF16565.5 gi|284165095|ref|YP_003403374.1| - 0.044 13.8 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT DUF3912 PF13051.6 gi|284165095|ref|YP_003403374.1| - 0.05 13.9 0.1 0.16 12.3 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) Pyr_redox PF00070.27 gi|284165095|ref|YP_003403374.1| - 0.055 14.0 0.2 2.1 8.9 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AAA_25 PF13481.6 gi|284165095|ref|YP_003403374.1| - 0.074 12.6 0.1 0.56 9.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain PRC PF05239.16 gi|284165095|ref|YP_003403374.1| - 0.079 13.1 3.0 0.069 13.2 1.0 2.0 2 0 0 2 2 2 0 PRC-barrel domain RNA_helicase PF00910.22 gi|284165095|ref|YP_003403374.1| - 0.11 12.9 0.0 0.7 10.3 0.0 2.5 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|284165095|ref|YP_003403374.1| - 0.11 12.8 0.1 0.46 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|284165095|ref|YP_003403374.1| - 0.13 12.4 0.4 0.31 11.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|284165095|ref|YP_003403374.1| - 0.23 11.4 1.1 0.51 10.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF4013 PF13197.6 gi|284165096|ref|YP_003403375.1| - 1.3e-07 31.6 13.4 1.3e-07 31.6 13.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) bPH_2 PF03703.14 gi|284165097|ref|YP_003403376.1| - 5.1e-54 180.4 4.9 2e-20 72.7 0.3 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|284165097|ref|YP_003403376.1| - 3.1e-05 24.0 0.0 0.074 13.1 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain bPH_5 PF10882.8 gi|284165097|ref|YP_003403376.1| - 0.0098 15.9 0.0 3.4 7.8 0.0 2.9 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.6 gi|284165097|ref|YP_003403376.1| - 0.033 14.5 0.0 4.5 7.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial PH domain bPH_2 PF03703.14 gi|284165098|ref|YP_003403377.1| - 6.1e-16 58.4 0.0 1.6e-15 57.0 0.0 1.6 2 0 0 2 2 2 1 Bacterial PH domain bPH_2 PF03703.14 gi|284165099|ref|YP_003403378.1| - 2.2e-51 172.0 2.0 1.4e-19 70.0 0.1 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|284165099|ref|YP_003403378.1| - 1.7e-06 28.0 0.0 0.013 15.5 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.6 gi|284165099|ref|YP_003403378.1| - 0.0033 17.8 0.0 1.6 9.2 0.0 2.5 2 0 0 2 2 2 2 Bacterial PH domain bPH_5 PF10882.8 gi|284165099|ref|YP_003403378.1| - 0.012 15.7 0.0 10 6.2 0.0 2.9 3 0 0 3 3 3 0 Bacterial PH domain bPH_2 PF03703.14 gi|284165100|ref|YP_003403379.1| - 3.6e-15 55.9 0.1 5.4e-15 55.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain BolA PF01722.18 gi|284165101|ref|YP_003403380.1| - 4.4e-18 65.3 0.2 5.2e-18 65.1 0.2 1.1 1 0 0 1 1 1 1 BolA-like protein PSK_trans_fac PF07704.11 gi|284165102|ref|YP_003403381.1| - 9.6 7.0 8.0 2.7 8.8 0.3 2.7 3 0 0 3 3 3 0 Rv0623-like transcription factor Patatin PF01734.22 gi|284165103|ref|YP_003403382.1| - 2.1e-17 64.0 7.0 2e-16 60.8 7.0 2.2 1 1 0 1 1 1 1 Patatin-like phospholipase tRNA-synt_1e PF01406.19 gi|284165104|ref|YP_003403383.1| - 4.2e-106 354.7 0.1 1.4e-104 349.7 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|284165104|ref|YP_003403383.1| - 5.4e-13 49.2 1.0 3.2e-12 46.7 0.4 2.2 1 1 1 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|284165104|ref|YP_003403383.1| - 9.4e-11 41.1 0.0 0.00021 20.2 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|284165104|ref|YP_003403383.1| - 3.1e-10 39.5 0.3 5.3e-09 35.5 0.3 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|284165104|ref|YP_003403383.1| - 0.00077 17.8 0.1 0.0034 15.7 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.19 gi|284165104|ref|YP_003403383.1| - 0.0052 15.8 0.1 0.024 13.6 0.0 2.1 3 0 0 3 3 3 1 tRNA synthetases class I (R) FTO_CTD PF12934.7 gi|284165104|ref|YP_003403383.1| - 0.052 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 FTO C-terminal domain UVR PF02151.19 gi|284165104|ref|YP_003403383.1| - 0.064 13.0 1.1 0.14 11.9 0.3 2.0 2 0 0 2 2 2 0 UvrB/uvrC motif tRNA-synt_1c PF00749.21 gi|284165104|ref|YP_003403383.1| - 0.13 11.2 0.0 0.27 10.1 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain UCR_Fe-S_N PF10399.9 gi|284165105|ref|YP_003403384.1| - 0.015 14.6 4.2 0.03 13.7 4.2 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|284165105|ref|YP_003403384.1| - 0.02 14.7 6.4 0.037 13.9 6.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SPP PF06550.11 gi|284165106|ref|YP_003403385.1| - 6.4e-86 288.3 27.3 3.3e-85 286.0 27.3 1.8 1 1 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|284165106|ref|YP_003403385.1| - 3e-06 27.0 9.9 9.1e-05 22.1 5.9 2.4 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|284165106|ref|YP_003403385.1| - 0.058 12.2 15.1 0.13 11.0 0.0 2.4 2 1 0 2 2 2 0 Presenilin Gar1 PF04410.14 gi|284165107|ref|YP_003403386.1| - 0.00017 21.4 0.0 0.00017 21.4 0.0 1.3 1 1 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|284165108|ref|YP_003403387.1| - 1.6e-25 89.9 0.0 1.8e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.18 gi|284165109|ref|YP_003403388.1| - 5.2e-29 101.5 6.4 8.6e-29 100.8 6.4 1.3 1 0 0 1 1 1 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|284165109|ref|YP_003403388.1| - 0.12 12.4 9.8 0.35 10.9 9.8 1.9 1 0 0 1 1 1 0 PGF-CTERM motif FecCD PF01032.18 gi|284165110|ref|YP_003403389.1| - 1.4e-86 290.3 31.7 2.9e-86 289.3 31.5 1.6 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|284165110|ref|YP_003403389.1| - 0.0015 18.1 13.3 0.0015 18.1 13.3 1.9 2 1 0 2 2 2 1 ABC 3 transport family ABC_tran PF00005.27 gi|284165111|ref|YP_003403390.1| - 2.4e-34 118.8 0.0 4.1e-34 118.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165111|ref|YP_003403390.1| - 4.3e-09 36.6 0.2 1e-05 25.6 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|284165111|ref|YP_003403390.1| - 1.4e-05 25.7 0.0 2.6e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284165111|ref|YP_003403390.1| - 2.4e-05 23.9 0.2 0.0017 17.8 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|284165111|ref|YP_003403390.1| - 0.0044 17.5 0.0 0.021 15.2 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|284165111|ref|YP_003403390.1| - 0.0088 15.8 0.1 0.0088 15.8 0.1 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|284165111|ref|YP_003403390.1| - 0.009 15.8 0.0 0.033 13.9 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|284165111|ref|YP_003403390.1| - 0.011 16.2 1.1 0.028 14.8 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain F420_oxidored PF03807.17 gi|284165111|ref|YP_003403390.1| - 0.014 16.0 0.1 0.062 13.9 0.1 2.2 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AAA_30 PF13604.6 gi|284165111|ref|YP_003403390.1| - 0.015 15.0 3.0 0.023 14.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|284165111|ref|YP_003403390.1| - 0.015 15.2 0.1 0.076 12.9 0.0 2.1 2 0 0 2 2 2 0 NTPase RsgA_GTPase PF03193.16 gi|284165111|ref|YP_003403390.1| - 0.016 15.1 0.1 0.043 13.7 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase TsaE PF02367.17 gi|284165111|ref|YP_003403390.1| - 0.032 14.2 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|284165111|ref|YP_003403390.1| - 0.032 14.4 0.3 0.1 12.7 0.3 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|284165111|ref|YP_003403390.1| - 0.034 14.2 0.1 0.11 12.6 0.1 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|284165111|ref|YP_003403390.1| - 0.049 13.2 0.0 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284165111|ref|YP_003403390.1| - 0.05 13.9 0.1 0.2 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|284165111|ref|YP_003403390.1| - 0.18 11.7 0.2 0.59 10.0 0.0 1.9 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|284165111|ref|YP_003403390.1| - 0.24 10.6 0.0 0.38 9.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_13 PF13166.6 gi|284165111|ref|YP_003403390.1| - 0.33 9.6 0.0 2.4 6.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain Acyl_transf_3 PF01757.22 gi|284165112|ref|YP_003403391.1| - 3.4e-20 72.4 32.6 4.2e-20 72.1 32.6 1.1 1 0 0 1 1 1 1 Acyltransferase family GatB_N PF02934.15 gi|284165116|ref|YP_003403395.1| - 5.9e-67 225.9 0.0 9.8e-67 225.2 0.0 1.3 1 1 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|284165116|ref|YP_003403395.1| - 1.5e-21 76.9 0.0 3e-21 75.8 0.0 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|284165116|ref|YP_003403395.1| - 1.4e-15 57.3 0.0 2.6e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|284165116|ref|YP_003403395.1| - 0.0021 18.1 0.2 0.0047 17.0 0.2 1.6 1 0 0 1 1 1 1 Yqey-like protein AsnC_trans_reg PF01037.21 gi|284165117|ref|YP_003403396.1| - 3.7e-11 42.8 0.5 6.7e-11 42.0 0.5 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_IclR PF09339.10 gi|284165117|ref|YP_003403396.1| - 1e-06 28.4 0.0 2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284165117|ref|YP_003403396.1| - 8.9e-06 25.2 0.2 2.8e-05 23.6 0.2 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284165117|ref|YP_003403396.1| - 0.00023 21.1 0.0 0.001 19.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|284165117|ref|YP_003403396.1| - 0.00045 20.1 0.4 0.00082 19.2 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|284165117|ref|YP_003403396.1| - 0.0022 17.8 0.0 0.0038 17.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|284165117|ref|YP_003403396.1| - 0.063 13.8 0.2 0.19 12.2 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain Nfu_N PF08712.11 gi|284165117|ref|YP_003403396.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal MarR_2 PF12802.7 gi|284165117|ref|YP_003403396.1| - 0.12 12.3 0.1 0.32 10.9 0.0 1.8 2 0 0 2 2 2 0 MarR family EamA PF00892.20 gi|284165118|ref|YP_003403397.1| - 1e-38 132.6 31.0 7.8e-20 71.4 10.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family zf-ribbon_3 PF13248.6 gi|284165119|ref|YP_003403398.1| - 0.016 14.6 1.5 3.9 7.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|284165119|ref|YP_003403398.1| - 0.02 14.6 3.0 0.041 13.6 3.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|284165119|ref|YP_003403398.1| - 0.047 13.7 0.2 0.093 12.8 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF2387 PF09526.10 gi|284165119|ref|YP_003403398.1| - 0.056 13.6 0.3 0.18 12.0 0.3 1.9 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.11 gi|284165119|ref|YP_003403398.1| - 0.057 13.3 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|284165119|ref|YP_003403398.1| - 0.058 13.3 1.0 0.11 12.5 1.0 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|284165119|ref|YP_003403398.1| - 0.14 11.7 0.6 0.34 10.5 0.6 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|284165119|ref|YP_003403398.1| - 0.14 12.3 0.7 0.33 11.2 0.7 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|284165119|ref|YP_003403398.1| - 0.67 10.0 7.4 1.3 9.1 0.1 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1610 PF07754.11 gi|284165119|ref|YP_003403398.1| - 1.4 8.9 8.9 22 5.1 9.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.6 gi|284165119|ref|YP_003403398.1| - 2.4 8.3 4.2 72 3.6 4.1 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C4_Topoisom PF01396.19 gi|284165119|ref|YP_003403398.1| - 3.3 7.6 5.1 3.4 7.5 0.1 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger SpoU_methylase PF00588.19 gi|284165121|ref|YP_003403400.1| - 8.6e-28 97.3 0.0 1.1e-27 96.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Cdc6_C PF09079.11 gi|284165122|ref|YP_003403401.1| - 6.3e-19 67.7 0.1 1.2e-18 66.8 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284165122|ref|YP_003403401.1| - 1.2e-13 51.5 0.1 3.9e-13 49.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284165122|ref|YP_003403401.1| - 2.1e-07 31.5 0.0 2.1e-07 31.5 0.0 2.5 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284165122|ref|YP_003403401.1| - 4.3e-05 24.0 0.0 0.00015 22.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284165122|ref|YP_003403401.1| - 0.00025 20.8 0.0 0.0008 19.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|284165122|ref|YP_003403401.1| - 0.00029 20.8 0.3 0.0027 17.7 0.3 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_32 PF13654.6 gi|284165122|ref|YP_003403401.1| - 0.00071 18.5 0.5 0.23 10.2 0.6 2.4 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|284165122|ref|YP_003403401.1| - 0.001 18.6 0.1 0.039 13.4 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein DUF815 PF05673.13 gi|284165122|ref|YP_003403401.1| - 0.0012 18.1 0.0 0.0029 16.8 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF815) PIF1 PF05970.14 gi|284165122|ref|YP_003403401.1| - 0.0019 17.5 0.0 0.0084 15.3 0.0 1.9 2 0 0 2 2 2 1 PIF1-like helicase DUF87 PF01935.17 gi|284165122|ref|YP_003403401.1| - 0.0021 18.2 2.2 0.0052 16.9 0.0 2.3 3 0 0 3 3 2 1 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|284165122|ref|YP_003403401.1| - 0.0029 17.3 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|284165122|ref|YP_003403401.1| - 0.0041 16.6 0.0 0.016 14.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial TniB protein NB-ARC PF00931.22 gi|284165122|ref|YP_003403401.1| - 0.0071 15.6 0.0 0.014 14.6 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain IstB_IS21 PF01695.17 gi|284165122|ref|YP_003403401.1| - 0.0088 15.8 0.1 0.26 11.0 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|284165122|ref|YP_003403401.1| - 0.022 15.3 0.6 0.068 13.7 0.6 2.1 1 1 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.18 gi|284165122|ref|YP_003403401.1| - 0.025 13.9 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|284165122|ref|YP_003403401.1| - 0.042 13.6 0.8 4.1 7.1 0.2 2.6 1 1 0 2 2 2 0 DEAD/DEAH box helicase ResIII PF04851.15 gi|284165122|ref|YP_003403401.1| - 0.043 13.8 0.2 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PCP_red PF08369.10 gi|284165122|ref|YP_003403401.1| - 0.054 13.7 0.3 0.16 12.2 0.2 1.9 2 0 0 2 2 1 0 Proto-chlorophyllide reductase 57 kD subunit RNA_helicase PF00910.22 gi|284165122|ref|YP_003403401.1| - 0.064 13.6 0.0 0.28 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Arf PF00025.21 gi|284165122|ref|YP_003403401.1| - 0.068 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family NACHT PF05729.12 gi|284165122|ref|YP_003403401.1| - 0.073 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_assoc_2 PF16193.5 gi|284165122|ref|YP_003403401.1| - 0.088 13.2 1.4 0.22 11.9 0.8 2.0 1 1 1 2 2 2 0 AAA C-terminal domain AAA_lid_10 PF17872.1 gi|284165122|ref|YP_003403401.1| - 0.09 12.9 0.1 0.21 11.8 0.1 1.6 1 0 0 1 1 1 0 AAA lid domain AAA_7 PF12775.7 gi|284165122|ref|YP_003403401.1| - 0.12 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SMC_N PF02463.19 gi|284165122|ref|YP_003403401.1| - 0.18 11.2 1.2 23 4.3 0.0 2.8 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain Pterin_bind PF00809.22 gi|284165123|ref|YP_003403402.1| - 3.7e-41 141.4 0.0 4.6e-41 141.1 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.18 gi|284165124|ref|YP_003403403.1| - 4.8e-19 68.7 0.0 6.3e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 HypA PF01155.19 gi|284165125|ref|YP_003403404.1| - 0.0093 16.0 0.8 0.0098 15.9 0.8 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|284165125|ref|YP_003403404.1| - 0.047 13.4 9.4 0.94 9.2 0.7 2.9 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NRDD PF13597.6 gi|284165125|ref|YP_003403404.1| - 0.13 11.0 0.5 0.12 11.1 0.5 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn_Tnp_IS1595 PF12760.7 gi|284165125|ref|YP_003403404.1| - 1.5 8.9 7.0 0.72 9.9 1.0 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RexB PF15968.5 gi|284165126|ref|YP_003403405.1| - 0.43 11.0 5.7 0.29 11.6 0.4 2.1 1 1 1 2 2 2 0 Membrane-anchored ion channel, Abi component HalOD1 PF18545.1 gi|284165127|ref|YP_003403406.1| - 2.1e-24 85.5 3.2 3.7e-24 84.8 2.5 1.7 1 1 1 2 2 2 1 Halobacterial output domain 1 AP_endonuc_2 PF01261.24 gi|284165128|ref|YP_003403407.1| - 1.1e-34 119.7 0.9 1.7e-34 119.1 0.5 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|284165128|ref|YP_003403407.1| - 1.5e-21 75.8 0.1 3.3e-21 74.8 0.1 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus CarboxypepD_reg PF13620.6 gi|284165129|ref|YP_003403408.1| - 0.0006 20.0 0.0 0.00077 19.7 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|284165129|ref|YP_003403408.1| - 0.0045 16.9 0.0 0.014 15.4 0.0 1.8 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) DUF4198 PF10670.9 gi|284165129|ref|YP_003403408.1| - 0.11 12.9 0.0 0.15 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) GFO_IDH_MocA PF01408.22 gi|284165130|ref|YP_003403409.1| - 7.4e-24 84.9 0.0 1.1e-23 84.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284165130|ref|YP_003403409.1| - 1.5e-10 41.1 0.0 3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|284165130|ref|YP_003403409.1| - 2.2e-05 23.9 0.0 3.4e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284165130|ref|YP_003403409.1| - 0.00017 22.1 0.0 0.00035 21.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|284165130|ref|YP_003403409.1| - 0.0052 17.5 0.0 0.0092 16.6 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.15 gi|284165130|ref|YP_003403409.1| - 0.0072 16.5 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_3 PF03447.16 gi|284165130|ref|YP_003403409.1| - 0.011 16.3 0.1 0.02 15.6 0.1 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284165130|ref|YP_003403409.1| - 0.032 13.8 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABC_tran PF00005.27 gi|284165131|ref|YP_003403410.1| - 3.4e-32 111.8 0.0 5.7e-32 111.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284165131|ref|YP_003403410.1| - 4.6e-12 46.6 0.1 1.5e-11 45.0 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|284165131|ref|YP_003403410.1| - 1.6e-06 28.2 0.0 0.015 15.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|284165131|ref|YP_003403410.1| - 2.1e-06 28.2 0.8 9.5e-06 26.1 0.2 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|284165131|ref|YP_003403410.1| - 8.4e-05 22.7 0.1 0.0026 17.9 0.1 2.7 1 1 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|284165131|ref|YP_003403410.1| - 0.00031 20.3 0.1 0.0014 18.1 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|284165131|ref|YP_003403410.1| - 0.0025 17.7 0.1 0.01 15.7 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|284165131|ref|YP_003403410.1| - 0.0041 16.9 0.0 0.011 15.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain TOBE PF03459.17 gi|284165131|ref|YP_003403410.1| - 0.0087 16.3 0.0 15 6.0 0.0 3.4 2 1 0 2 2 2 0 TOBE domain AAA_15 PF13175.6 gi|284165131|ref|YP_003403410.1| - 0.0092 15.7 0.0 1.4 8.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|284165131|ref|YP_003403410.1| - 0.011 15.5 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|284165131|ref|YP_003403410.1| - 0.015 15.2 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|284165131|ref|YP_003403410.1| - 0.016 15.5 0.0 0.044 14.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|284165131|ref|YP_003403410.1| - 0.018 15.4 0.6 0.045 14.1 0.1 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|284165131|ref|YP_003403410.1| - 0.019 15.1 0.3 0.05 13.8 0.3 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|284165131|ref|YP_003403410.1| - 0.039 14.4 0.0 0.12 12.8 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA PF00004.29 gi|284165131|ref|YP_003403410.1| - 0.12 12.8 0.6 0.25 11.8 0.6 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BPD_transp_1 PF00528.22 gi|284165132|ref|YP_003403411.1| - 4.8e-11 42.7 19.6 4.8e-11 42.7 19.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284165133|ref|YP_003403412.1| - 6.4e-16 58.6 20.8 6.4e-16 58.6 20.8 2.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TraP PF07296.11 gi|284165133|ref|YP_003403412.1| - 0.13 11.4 3.1 1.4 8.0 0.5 2.3 2 0 0 2 2 2 0 TraP protein ThiW PF09512.10 gi|284165133|ref|YP_003403412.1| - 0.15 12.2 13.0 0.12 12.5 5.1 2.6 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) SBP_bac_8 PF13416.6 gi|284165134|ref|YP_003403413.1| - 3.6e-17 63.1 0.1 5.5e-17 62.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284165134|ref|YP_003403413.1| - 2.4e-11 44.2 0.2 6e-11 42.9 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Regulator_TrmB PF11495.8 gi|284165135|ref|YP_003403414.1| - 7.3e-68 228.2 0.4 1.2e-67 227.5 0.4 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|284165135|ref|YP_003403414.1| - 1.8e-21 75.8 0.0 4.5e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284165135|ref|YP_003403414.1| - 9.4e-07 28.6 0.2 3.8e-06 26.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|284165135|ref|YP_003403414.1| - 1.8e-06 27.9 0.1 9.4e-06 25.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284165135|ref|YP_003403414.1| - 4e-05 23.3 0.1 0.00012 21.8 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284165135|ref|YP_003403414.1| - 0.00034 20.1 0.0 0.0023 17.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284165135|ref|YP_003403414.1| - 0.0004 20.2 0.1 0.0057 16.5 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_CodY PF08222.11 gi|284165135|ref|YP_003403414.1| - 0.0025 17.3 0.4 0.0068 15.9 0.0 2.0 2 0 0 2 2 2 1 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|284165135|ref|YP_003403414.1| - 0.004 17.5 0.0 0.0088 16.4 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|284165135|ref|YP_003403414.1| - 0.014 15.3 0.0 0.18 11.7 0.0 2.4 2 0 0 2 2 2 0 MarR family DUF190 PF02641.15 gi|284165135|ref|YP_003403414.1| - 0.041 14.2 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized ACR, COG1993 DUF2250 PF10007.9 gi|284165135|ref|YP_003403414.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_7 PF02796.15 gi|284165135|ref|YP_003403414.1| - 0.094 12.8 0.1 21 5.3 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|284165135|ref|YP_003403414.1| - 0.099 12.2 0.1 0.73 9.4 0.0 2.4 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|284165135|ref|YP_003403414.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_47 PF16221.5 gi|284165135|ref|YP_003403414.1| - 0.15 11.6 0.0 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 winged helix-turn-helix HTH_9 PF08221.11 gi|284165135|ref|YP_003403414.1| - 0.2 11.8 0.0 0.51 10.5 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MS_channel PF00924.18 gi|284165136|ref|YP_003403415.1| - 2e-33 115.7 0.2 2.8e-33 115.2 0.2 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel EI24 PF07264.11 gi|284165136|ref|YP_003403415.1| - 0.0025 18.1 2.6 0.013 15.8 2.6 1.9 1 1 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) TM_helix PF05552.12 gi|284165136|ref|YP_003403415.1| - 0.017 15.1 0.2 0.017 15.1 0.2 2.8 3 0 0 3 3 3 0 Conserved TM helix MatE PF01554.18 gi|284165136|ref|YP_003403415.1| - 0.035 13.8 5.5 0.056 13.1 5.5 1.3 1 0 0 1 1 1 0 MatE DUF3523 PF12037.8 gi|284165136|ref|YP_003403415.1| - 0.06 12.7 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3523) DUF3262 PF11660.8 gi|284165136|ref|YP_003403415.1| - 0.091 13.2 0.3 0.091 13.2 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF1129 PF06570.11 gi|284165136|ref|YP_003403415.1| - 1 8.8 3.7 1.6 8.2 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Usp PF00582.26 gi|284165137|ref|YP_003403416.1| - 5.3e-32 111.3 2.2 5.9e-32 111.1 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family HGTP_anticodon PF03129.20 gi|284165137|ref|YP_003403416.1| - 0.061 13.5 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 Anticodon binding domain Usp PF00582.26 gi|284165138|ref|YP_003403417.1| - 6.9e-11 42.8 0.3 4.3e-09 37.0 0.3 2.1 1 1 0 1 1 1 1 Universal stress protein family Zn-ribbon_8 PF09723.10 gi|284165139|ref|YP_003403418.1| - 0.068 13.3 0.9 0.12 12.5 0.9 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|284165139|ref|YP_003403418.1| - 1.1 9.6 6.6 0.94 9.8 0.8 2.4 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase YqfD PF06898.11 gi|284165140|ref|YP_003403419.1| - 0.016 14.0 0.0 0.022 13.6 0.0 1.1 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD Aminotran_5 PF00266.19 gi|284165141|ref|YP_003403420.1| - 3.4e-37 128.3 0.0 4.1e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|284165141|ref|YP_003403420.1| - 0.0001 21.0 0.0 0.00014 20.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|284165141|ref|YP_003403420.1| - 0.00028 20.3 0.2 0.00046 19.6 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.19 gi|284165141|ref|YP_003403420.1| - 0.04 13.9 0.1 0.11 12.6 0.1 1.7 1 0 0 1 1 1 0 B12 binding domain YdjM PF04307.14 gi|284165142|ref|YP_003403421.1| - 3.5e-15 55.7 29.6 1.7e-14 53.5 21.8 3.3 2 1 1 3 3 3 1 LexA-binding, inner membrane-associated putative hydrolase DUF2238 PF09997.9 gi|284165144|ref|YP_003403423.1| - 0.00014 21.6 2.2 0.00026 20.8 2.2 1.6 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Dodecin PF07311.12 gi|284165145|ref|YP_003403424.1| - 6.4e-22 77.6 0.1 7e-22 77.5 0.1 1.0 1 0 0 1 1 1 1 Dodecin Fe-S_biosyn PF01521.20 gi|284165146|ref|YP_003403425.1| - 9.8e-19 67.6 0.0 1.1e-18 67.4 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis DnaG_DnaB_bind PF08278.11 gi|284165147|ref|YP_003403426.1| - 0.051 14.2 0.0 0.051 14.2 0.0 1.1 1 0 0 1 1 1 0 DNA primase DnaG DnaB-binding Histidinol_dh PF00815.20 gi|284165148|ref|YP_003403427.1| - 6.3e-156 519.5 3.7 7.5e-156 519.2 3.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase YdjM PF04307.14 gi|284165150|ref|YP_003403429.1| - 2.3e-07 30.3 3.7 3.5e-07 29.7 3.7 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Vmethyltransf_C PF08456.10 gi|284165151|ref|YP_003403430.1| - 0.011 15.3 0.1 0.013 15.1 0.1 1.2 1 0 0 1 1 1 0 Viral methyltransferase C-terminal HTH_40 PF14493.6 gi|284165151|ref|YP_003403430.1| - 0.11 13.0 0.2 0.16 12.4 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain SAM_2 PF07647.17 gi|284165152|ref|YP_003403431.1| - 0.1 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) COX2 PF00116.20 gi|284165153|ref|YP_003403432.1| - 1.8e-18 66.5 1.5 1.4e-17 63.6 0.0 2.2 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|284165153|ref|YP_003403432.1| - 3e-10 40.1 0.1 4.8e-10 39.5 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|284165153|ref|YP_003403432.1| - 0.00017 21.6 0.0 0.00034 20.7 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain Ni_hydr_CYTB PF01292.20 gi|284165153|ref|YP_003403432.1| - 0.025 14.2 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 TctB PF07331.11 gi|284165153|ref|YP_003403432.1| - 0.076 13.3 0.7 0.11 12.7 0.7 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Cyt_bd_oxida_II PF02322.15 gi|284165153|ref|YP_003403432.1| - 0.087 12.2 0.2 0.13 11.6 0.2 1.3 1 0 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II COX1 PF00115.20 gi|284165154|ref|YP_003403433.1| - 3.8e-136 454.4 60.0 3.8e-136 454.4 60.0 2.8 2 1 1 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I Mn_catalase PF05067.12 gi|284165156|ref|YP_003403435.1| - 1e-79 267.5 0.1 1.2e-79 267.2 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase Rubrerythrin PF02915.17 gi|284165156|ref|YP_003403435.1| - 0.00083 19.8 0.1 0.0022 18.4 0.2 1.6 2 0 0 2 2 2 1 Rubrerythrin Ferritin-like PF12902.7 gi|284165156|ref|YP_003403435.1| - 0.05 13.5 0.1 0.082 12.8 0.1 1.4 1 0 0 1 1 1 0 Ferritin-like Ferritin PF00210.24 gi|284165156|ref|YP_003403435.1| - 0.19 11.6 5.1 0.12 12.3 1.0 2.5 2 1 1 3 3 3 0 Ferritin-like domain COX3 PF00510.18 gi|284165159|ref|YP_003403438.1| - 1e-33 117.3 9.8 1.3e-33 116.9 9.8 1.1 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Trp_oprn_chp PF09534.10 gi|284165159|ref|YP_003403438.1| - 0.11 12.3 5.4 0.94 9.2 4.5 2.6 2 1 1 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HATPase_c PF02518.26 gi|284165160|ref|YP_003403439.1| - 3.9e-27 95.0 0.0 1.1e-26 93.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284165160|ref|YP_003403439.1| - 3.1e-11 43.1 0.0 3.1e-11 43.1 0.0 2.6 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284165160|ref|YP_003403439.1| - 8.1e-10 38.9 0.3 2.5e-09 37.4 0.2 2.0 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|284165160|ref|YP_003403439.1| - 0.00044 20.1 0.0 1.3 9.0 0.0 2.3 2 0 0 2 2 2 2 GHKL domain HisKA_4TM PF16926.5 gi|284165160|ref|YP_003403439.1| - 0.0048 16.5 2.1 0.036 13.6 1.8 2.3 2 1 1 3 3 3 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|284165160|ref|YP_003403439.1| - 0.043 13.6 0.0 0.32 10.8 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|284165160|ref|YP_003403439.1| - 0.066 13.5 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 PAS domain Pyr_redox_2 PF07992.14 gi|284165161|ref|YP_003403440.1| - 8.7e-11 41.6 0.1 6.2e-06 25.6 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284165161|ref|YP_003403440.1| - 1.5e-09 38.0 3.3 0.00031 20.5 0.0 2.5 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284165161|ref|YP_003403440.1| - 7.9e-08 31.9 0.2 0.001 18.4 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|284165161|ref|YP_003403440.1| - 5.6e-06 26.0 0.0 8.4e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284165161|ref|YP_003403440.1| - 6.8e-06 25.0 0.4 0.00071 18.4 1.3 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|284165161|ref|YP_003403440.1| - 1.4e-05 25.2 0.5 0.099 12.6 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|284165161|ref|YP_003403440.1| - 0.00012 22.2 0.2 0.00035 20.7 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|284165161|ref|YP_003403440.1| - 0.00015 21.0 0.7 0.00025 20.3 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|284165161|ref|YP_003403440.1| - 0.00021 20.3 0.2 0.025 13.5 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 gi|284165161|ref|YP_003403440.1| - 0.00051 19.2 4.1 0.00054 19.2 0.2 2.5 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|284165161|ref|YP_003403440.1| - 0.017 14.4 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 Thi4 family Lycopene_cycl PF05834.12 gi|284165161|ref|YP_003403440.1| - 0.018 14.1 0.1 0.11 11.6 0.3 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|284165161|ref|YP_003403440.1| - 0.056 14.0 0.1 1.2 9.8 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284165161|ref|YP_003403440.1| - 0.06 12.6 0.3 0.094 12.0 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|284165161|ref|YP_003403440.1| - 0.22 10.7 0.2 0.54 9.5 0.4 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|284165162|ref|YP_003403441.1| - 2e-55 186.9 0.0 2.7e-55 186.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|284165162|ref|YP_003403441.1| - 2.5e-13 49.9 0.0 3.3e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ThiF PF00899.21 gi|284165162|ref|YP_003403441.1| - 0.0054 16.1 0.0 0.0085 15.5 0.0 1.3 1 0 0 1 1 1 1 ThiF family IlvN PF07991.12 gi|284165162|ref|YP_003403441.1| - 0.0062 16.1 0.0 0.067 12.8 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|284165162|ref|YP_003403441.1| - 0.011 16.3 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284165162|ref|YP_003403441.1| - 0.034 14.3 0.0 0.053 13.7 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|284165162|ref|YP_003403441.1| - 0.049 14.1 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding PikAIV_N PF18605.1 gi|284165162|ref|YP_003403441.1| - 0.051 13.2 0.3 2.3 7.9 0.5 2.6 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain DNA_pol3_chi PF04364.13 gi|284165162|ref|YP_003403441.1| - 0.26 11.5 0.6 29 4.8 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase III chi subunit, HolC Usp PF00582.26 gi|284165163|ref|YP_003403442.1| - 9.8e-12 45.6 2.0 1.2e-11 45.3 2.0 1.1 1 0 0 1 1 1 1 Universal stress protein family HGD-D PF06050.13 gi|284165163|ref|YP_003403442.1| - 0.00052 19.9 0.0 0.00058 19.7 0.0 1.2 1 1 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component DUF2486 PF10667.9 gi|284165163|ref|YP_003403442.1| - 0.0077 16.5 1.2 0.0097 16.2 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2486) DUF4447 PF14590.6 gi|284165163|ref|YP_003403442.1| - 0.099 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4447) HTH_20 PF12840.7 gi|284165164|ref|YP_003403443.1| - 0.00019 21.4 2.2 0.0011 19.0 2.2 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain Semialdhyde_dh PF01118.24 gi|284165165|ref|YP_003403444.1| - 2.2e-35 121.7 0.0 3.7e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|284165165|ref|YP_003403444.1| - 9.8e-31 107.2 0.0 1.4e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|284165165|ref|YP_003403444.1| - 5.8e-05 23.2 0.0 0.00011 22.3 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|284165165|ref|YP_003403444.1| - 0.00015 22.4 0.0 0.00029 21.5 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.22 gi|284165165|ref|YP_003403444.1| - 0.019 15.8 0.0 0.034 15.0 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.20 gi|284165165|ref|YP_003403444.1| - 0.031 13.9 0.0 0.08 12.5 0.0 1.6 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Subtilosin_A PF11420.8 gi|284165165|ref|YP_003403444.1| - 0.14 12.1 0.3 2.4 8.2 0.0 2.4 2 0 0 2 2 2 0 Bacteriocin subtilosin A DUF2530 PF10745.9 gi|284165167|ref|YP_003403446.1| - 2.6 8.4 9.5 2.8 8.2 8.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) Ribosomal_S17e PF00833.18 gi|284165168|ref|YP_003403447.1| - 1.1e-12 47.9 0.1 1.3e-12 47.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 HNF-1_N PF04814.13 gi|284165168|ref|YP_003403447.1| - 0.014 16.0 0.0 0.014 16.0 0.0 1.0 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus DUF4019 PF13211.6 gi|284165168|ref|YP_003403447.1| - 0.069 13.5 0.0 0.091 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DUF447 PF04289.12 gi|284165169|ref|YP_003403448.1| - 2e-34 118.9 0.0 2.6e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) CitG PF01874.16 gi|284165170|ref|YP_003403449.1| - 1.6e-66 224.8 4.6 1.8e-66 224.7 4.6 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Rubredoxin_2 PF18073.1 gi|284165171|ref|YP_003403450.1| - 0.008 15.9 3.1 0.13 12.0 1.6 2.4 2 0 0 2 2 2 1 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 gi|284165171|ref|YP_003403450.1| - 0.028 14.3 3.4 0.26 11.2 0.1 2.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain UPF0547 PF10571.9 gi|284165171|ref|YP_003403450.1| - 0.14 12.2 0.9 0.14 12.2 0.9 2.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2631 PF10939.8 gi|284165171|ref|YP_003403450.1| - 0.15 11.9 0.2 0.95 9.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2631) Dus PF01207.17 gi|284165172|ref|YP_003403451.1| - 1.1e-06 28.0 0.2 4.8e-06 25.9 0.2 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|284165172|ref|YP_003403451.1| - 0.00037 20.0 0.1 0.0006 19.4 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein Radical_SAM PF04055.21 gi|284165172|ref|YP_003403451.1| - 0.0018 18.6 0.3 3.8 7.9 0.0 2.9 1 1 1 2 2 2 2 Radical SAM superfamily DUF1633 PF07794.11 gi|284165172|ref|YP_003403451.1| - 0.034 12.4 2.1 0.036 12.3 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) IGPS PF00218.21 gi|284165172|ref|YP_003403451.1| - 0.078 12.1 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.19 gi|284165172|ref|YP_003403451.1| - 0.11 11.8 0.2 0.35 10.2 0.2 1.9 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family DUF1983 PF09327.11 gi|284165172|ref|YP_003403451.1| - 0.16 12.1 1.0 0.58 10.3 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1983) UPF0052 PF01933.18 gi|284165173|ref|YP_003403452.1| - 5.6e-45 153.8 0.0 6.9e-45 153.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Oxidored_nitro PF00148.19 gi|284165173|ref|YP_003403452.1| - 0.042 12.6 0.0 0.067 11.9 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase MatE PF01554.18 gi|284165174|ref|YP_003403453.1| - 2.1e-59 199.8 40.4 1.3e-34 119.2 14.1 2.8 4 0 0 4 4 4 2 MatE TetR_C_6 PF13977.6 gi|284165175|ref|YP_003403454.1| - 1.1e-15 57.8 3.6 1.6e-15 57.3 2.3 1.8 1 1 1 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|284165175|ref|YP_003403454.1| - 6.8e-09 35.4 0.3 1.1e-08 34.7 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|284165175|ref|YP_003403454.1| - 1.1e-05 25.6 0.1 3.8e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|284165175|ref|YP_003403454.1| - 0.00053 20.1 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|284165175|ref|YP_003403454.1| - 0.0065 16.8 1.2 0.0065 16.8 1.2 2.3 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain CorA PF01544.18 gi|284165175|ref|YP_003403454.1| - 0.0095 15.3 0.5 0.019 14.3 0.1 1.7 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein TetR_C_37 PF18665.1 gi|284165175|ref|YP_003403454.1| - 0.017 15.7 0.0 2.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|284165175|ref|YP_003403454.1| - 0.034 14.5 0.5 0.16 12.3 0.0 2.1 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|284165175|ref|YP_003403454.1| - 0.036 14.1 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 gi|284165175|ref|YP_003403454.1| - 0.036 14.0 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|284165175|ref|YP_003403454.1| - 0.066 13.4 3.6 0.64 10.3 3.6 2.4 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|284165175|ref|YP_003403454.1| - 0.087 12.9 0.0 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 gi|284165175|ref|YP_003403454.1| - 0.16 12.2 0.0 0.26 11.4 0.0 1.5 1 1 0 1 1 1 0 YsiA-like protein, C-terminal region GCS PF03074.16 gi|284165176|ref|YP_003403455.1| - 0.027 13.8 0.1 0.37 10.1 0.0 2.1 1 1 1 2 2 2 0 Glutamate-cysteine ligase DNA_ligase_A_M PF01068.21 gi|284165177|ref|YP_003403456.1| - 1.7e-44 151.9 0.0 2.6e-44 151.3 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|284165177|ref|YP_003403456.1| - 1.5e-35 123.1 0.0 8.1e-35 120.7 0.0 2.1 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|284165177|ref|YP_003403456.1| - 1.4e-17 64.1 0.0 3.7e-17 62.7 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 gi|284165177|ref|YP_003403456.1| - 0.0039 17.0 0.0 1.2 9.0 0.0 2.2 2 0 0 2 2 2 2 mRNA capping enzyme, catalytic domain Hemerythrin PF01814.23 gi|284165177|ref|YP_003403456.1| - 2 9.1 7.5 3.2 8.4 0.0 3.6 4 0 0 4 4 4 0 Hemerythrin HHE cation binding domain MFS_1 PF07690.16 gi|284165178|ref|YP_003403457.1| - 8.6e-39 133.5 63.1 1.5e-26 93.2 33.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284165178|ref|YP_003403457.1| - 2.3e-09 36.6 9.8 2.3e-09 36.6 9.8 2.1 1 1 0 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|284165178|ref|YP_003403457.1| - 0.0056 16.0 42.6 0.0073 15.6 42.6 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB PRA1 PF03208.19 gi|284165178|ref|YP_003403457.1| - 7 6.3 22.0 0.92 9.1 3.2 3.0 3 1 0 3 3 3 0 PRA1 family protein Aminotran_1_2 PF00155.21 gi|284165179|ref|YP_003403458.1| - 6.6e-65 219.6 0.0 7.4e-65 219.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|284165179|ref|YP_003403458.1| - 0.00061 18.4 0.0 0.0012 17.5 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|284165179|ref|YP_003403458.1| - 0.025 13.5 0.0 0.091 11.6 0.0 1.8 1 1 0 1 1 1 0 Allinase HTH_38 PF13936.6 gi|284165179|ref|YP_003403458.1| - 0.036 13.8 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Aminotran_5 PF00266.19 gi|284165179|ref|YP_003403458.1| - 0.073 12.0 0.0 0.51 9.2 0.0 2.0 2 0 0 2 2 2 0 Aminotransferase class-V FTR PF01913.18 gi|284165179|ref|YP_003403458.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase AAA_18 PF13238.6 gi|284165180|ref|YP_003403459.1| - 1.4e-24 87.1 0.1 2.5e-24 86.3 0.1 1.5 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|284165180|ref|YP_003403459.1| - 0.00052 20.3 5.0 0.0045 17.2 5.0 2.3 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|284165180|ref|YP_003403459.1| - 0.0025 17.7 0.1 0.91 9.3 0.0 2.1 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|284165180|ref|YP_003403459.1| - 0.0065 16.7 0.0 0.0088 16.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|284165180|ref|YP_003403459.1| - 0.012 15.8 4.3 1.6 8.9 0.6 2.3 1 1 0 2 2 2 0 AAA domain PRK PF00485.18 gi|284165180|ref|YP_003403459.1| - 0.012 15.4 0.4 0.21 11.3 0.1 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|284165180|ref|YP_003403459.1| - 0.016 15.6 3.9 0.034 14.5 3.9 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.6 gi|284165180|ref|YP_003403459.1| - 0.019 15.4 1.1 3.1 8.2 1.1 2.4 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|284165180|ref|YP_003403459.1| - 0.039 12.9 0.0 0.082 11.9 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB L27_2 PF09045.10 gi|284165180|ref|YP_003403459.1| - 0.046 13.7 0.6 1.2 9.1 0.3 2.3 2 0 0 2 2 2 0 L27_2 KTI12 PF08433.10 gi|284165180|ref|YP_003403459.1| - 0.06 12.8 0.0 0.076 12.4 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|284165180|ref|YP_003403459.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|284165180|ref|YP_003403459.1| - 0.082 12.6 0.2 0.15 11.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|284165180|ref|YP_003403459.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|284165180|ref|YP_003403459.1| - 0.12 12.1 0.1 3.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA PF00004.29 gi|284165180|ref|YP_003403459.1| - 0.13 12.6 0.0 0.46 10.9 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284165180|ref|YP_003403459.1| - 0.2 11.4 2.2 0.52 10.0 2.2 2.0 1 1 0 1 1 1 0 AAA domain CDP-OH_P_transf PF01066.21 gi|284165181|ref|YP_003403460.1| - 7.3e-08 33.1 1.8 7.3e-08 33.1 1.8 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HTH_3 PF01381.22 gi|284165182|ref|YP_003403461.1| - 2.4e-09 37.1 0.2 3.2e-09 36.7 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|284165182|ref|YP_003403461.1| - 8.2e-08 32.2 0.2 1.3e-07 31.5 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|284165182|ref|YP_003403461.1| - 7.9e-07 29.3 0.1 1.2e-06 28.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|284165182|ref|YP_003403461.1| - 1.6e-05 24.7 0.4 2.4e-05 24.1 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|284165182|ref|YP_003403461.1| - 0.057 13.4 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NOA36 PF06524.12 gi|284165182|ref|YP_003403461.1| - 0.078 12.3 5.1 0.098 12.0 5.1 1.1 1 0 0 1 1 1 0 NOA36 protein Macoilin PF09726.9 gi|284165182|ref|YP_003403461.1| - 1.2 7.6 8.5 1.4 7.4 8.5 1.1 1 0 0 1 1 1 0 Macoilin family PI3K_1B_p101 PF10486.9 gi|284165182|ref|YP_003403461.1| - 2.6 5.7 13.6 28 2.3 0.0 1.9 1 1 1 2 2 2 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit TIM PF00121.18 gi|284165183|ref|YP_003403462.1| - 1.1e-08 34.8 0.0 3e-08 33.3 0.0 1.6 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|284165183|ref|YP_003403462.1| - 3.9e-05 23.1 3.0 9.4e-05 21.8 3.0 1.7 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|284165183|ref|YP_003403462.1| - 0.0011 18.1 2.0 0.0011 18.1 2.0 1.7 2 1 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|284165183|ref|YP_003403462.1| - 0.0017 17.6 0.0 0.0097 15.1 0.0 2.2 1 1 1 2 2 2 1 Indole-3-glycerol phosphate synthase Glu_synthase PF01645.17 gi|284165183|ref|YP_003403462.1| - 0.039 13.1 1.1 0.068 12.3 0.3 1.7 1 1 1 2 2 2 0 Conserved region in glutamate synthase Hydrolase_like PF13242.6 gi|284165183|ref|YP_003403462.1| - 0.061 13.4 3.6 0.27 11.3 0.3 2.8 3 0 0 3 3 3 0 HAD-hyrolase-like NMO PF03060.15 gi|284165183|ref|YP_003403462.1| - 0.31 10.4 12.3 0.078 12.3 7.1 2.0 1 1 1 2 2 2 0 Nitronate monooxygenase TIR_2 PF13676.6 gi|284165185|ref|YP_003403464.1| - 3.8e-09 37.2 0.0 5.4e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.15 gi|284165185|ref|YP_003403464.1| - 1.3e-06 28.4 0.0 2.2e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF1863 PF08937.11 gi|284165185|ref|YP_003403464.1| - 6.7e-06 26.4 0.0 9.9e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) Lar_restr_allev PF14354.6 gi|284165185|ref|YP_003403464.1| - 0.15 12.4 0.1 0.24 11.8 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Abhydrolase_1 PF00561.20 gi|284165186|ref|YP_003403465.1| - 1.1e-16 61.3 0.0 1.1e-14 54.8 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284165186|ref|YP_003403465.1| - 9.6e-15 55.8 3.6 1.2e-14 55.5 3.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284165186|ref|YP_003403465.1| - 1.7e-07 30.8 0.0 2.6e-06 26.9 0.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Radical_SAM PF04055.21 gi|284165187|ref|YP_003403466.1| - 5e-16 59.5 1.5 1.9e-13 51.1 0.2 2.6 3 0 0 3 3 3 2 Radical SAM superfamily BATS PF06968.13 gi|284165187|ref|YP_003403466.1| - 4.3e-14 52.4 0.0 7.9e-14 51.6 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Pterin_bind PF00809.22 gi|284165187|ref|YP_003403466.1| - 0.066 12.9 0.1 0.33 10.6 0.1 2.1 1 1 0 1 1 1 0 Pterin binding enzyme GFO_IDH_MocA PF01408.22 gi|284165188|ref|YP_003403467.1| - 0.009 16.8 0.1 2.1 9.2 0.0 3.0 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.21 gi|284165188|ref|YP_003403467.1| - 0.012 15.3 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|284165188|ref|YP_003403467.1| - 0.08 13.2 0.2 2.3 8.5 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain Phage_T4_gp36 PF03903.13 gi|284165188|ref|YP_003403467.1| - 0.49 10.3 0.1 0.49 10.3 0.1 2.5 3 0 0 3 3 3 0 Phage T4 tail fibre Aminotran_1_2 PF00155.21 gi|284165189|ref|YP_003403468.1| - 2.3e-58 198.1 0.0 2.6e-58 197.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|284165189|ref|YP_003403468.1| - 1.1e-05 24.2 0.0 2.4e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|284165189|ref|YP_003403468.1| - 0.00044 19.7 2.1 0.08 12.2 0.3 2.2 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|284165189|ref|YP_003403468.1| - 0.014 14.3 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|284165189|ref|YP_003403468.1| - 0.027 13.7 1.6 0.047 13.0 1.3 1.6 1 1 0 1 1 1 0 Beta-eliminating lyase Flg_hook PF02120.16 gi|284165189|ref|YP_003403468.1| - 0.049 13.5 0.1 0.89 9.5 0.0 2.3 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK OKR_DC_1 PF01276.20 gi|284165189|ref|YP_003403468.1| - 0.18 10.5 0.0 0.39 9.4 0.0 1.6 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain RP1-2 PF12042.8 gi|284165189|ref|YP_003403468.1| - 0.32 10.8 3.3 0.13 12.2 0.4 1.8 2 0 0 2 2 2 0 Tubuliform egg casing silk strands structural domain AAA_26 PF13500.6 gi|284165190|ref|YP_003403469.1| - 8.4e-31 107.3 0.0 1e-30 107.1 0.0 1.0 1 0 0 1 1 1 1 AAA domain DUF1611 PF07755.11 gi|284165190|ref|YP_003403469.1| - 6.6e-06 25.5 3.2 9.4e-05 21.8 0.2 2.9 1 1 2 3 3 3 1 Domain of unknown function (DUF1611_C) P-loop domain CbiA PF01656.23 gi|284165190|ref|YP_003403469.1| - 1e-05 25.6 0.0 2.2e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain zf-C2H2_4 PF13894.6 gi|284165191|ref|YP_003403470.1| - 0.00058 20.5 0.1 0.0008 20.0 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-Di19 PF05605.12 gi|284165191|ref|YP_003403470.1| - 0.0016 18.7 0.1 0.0022 18.3 0.1 1.2 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|284165191|ref|YP_003403470.1| - 0.0025 18.2 0.1 0.0034 17.7 0.1 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type AAA PF00004.29 gi|284165192|ref|YP_003403471.1| - 1.6e-10 41.5 0.0 6.2e-10 39.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|284165192|ref|YP_003403471.1| - 3.4e-05 23.6 0.0 7.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|284165192|ref|YP_003403471.1| - 0.00044 20.5 0.3 0.0012 19.1 0.3 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|284165192|ref|YP_003403471.1| - 0.0013 19.0 0.6 0.66 10.2 0.0 3.3 2 2 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|284165192|ref|YP_003403471.1| - 0.0016 18.1 0.5 0.76 9.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|284165192|ref|YP_003403471.1| - 0.0095 15.9 0.0 0.026 14.5 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|284165192|ref|YP_003403471.1| - 0.01 16.3 0.3 0.098 13.0 0.0 2.5 1 1 2 3 3 3 0 AAA ATPase domain Hydin_ADK PF17213.3 gi|284165192|ref|YP_003403471.1| - 0.026 14.8 0.1 0.026 14.8 0.1 2.0 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain DUF2075 PF09848.9 gi|284165192|ref|YP_003403471.1| - 0.032 13.5 0.5 6.6 5.9 0.1 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|284165192|ref|YP_003403471.1| - 0.036 14.0 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|284165192|ref|YP_003403471.1| - 0.037 14.3 0.9 0.082 13.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|284165192|ref|YP_003403471.1| - 0.043 14.0 1.1 0.081 13.1 0.0 2.1 3 0 0 3 3 1 0 AAA domain Zeta_toxin PF06414.12 gi|284165192|ref|YP_003403471.1| - 0.073 12.3 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF1314 PF07013.11 gi|284165192|ref|YP_003403471.1| - 0.087 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1314) AAA_5 PF07728.14 gi|284165192|ref|YP_003403471.1| - 0.095 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|284165192|ref|YP_003403471.1| - 0.11 13.0 0.2 0.46 11.0 0.0 2.2 2 0 0 2 2 1 0 AAA domain IPT PF01745.16 gi|284165192|ref|YP_003403471.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase IstB_IS21 PF01695.17 gi|284165192|ref|YP_003403471.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|284165192|ref|YP_003403471.1| - 0.18 12.2 0.0 0.46 10.9 0.0 1.8 1 1 0 1 1 1 0 RNA helicase YtkA PF13115.6 gi|284165195|ref|YP_003403474.1| - 0.014 16.0 0.0 1 10.0 0.0 3.2 2 1 0 2 2 2 0 YtkA-like MoCF_biosynth PF00994.24 gi|284165197|ref|YP_003403476.1| - 1.4e-29 102.6 0.1 2.4e-29 101.8 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain CinA_KH PF18146.1 gi|284165197|ref|YP_003403476.1| - 0.02 15.0 0.1 0.076 13.2 0.0 1.9 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain Acetate_kinase PF00871.17 gi|284165197|ref|YP_003403476.1| - 0.049 12.3 0.0 0.073 11.8 0.0 1.2 1 0 0 1 1 1 0 Acetokinase family DUF2157 PF09925.9 gi|284165198|ref|YP_003403477.1| - 0.041 13.7 2.5 0.048 13.4 2.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) CPP1-like PF11833.8 gi|284165198|ref|YP_003403477.1| - 0.084 12.5 3.4 0.085 12.5 3.4 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like PIRT PF15099.6 gi|284165198|ref|YP_003403477.1| - 0.096 12.3 0.4 0.13 11.8 0.4 1.2 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family TraL PF07178.11 gi|284165198|ref|YP_003403477.1| - 0.27 11.7 2.2 0.45 11.0 0.2 1.9 1 1 1 2 2 2 0 TraL protein DUF202 PF02656.15 gi|284165198|ref|YP_003403477.1| - 0.35 11.3 3.1 2.6 8.6 2.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) HTH_20 PF12840.7 gi|284165199|ref|YP_003403478.1| - 3.7e-09 36.5 0.2 5.5e-09 36.0 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284165199|ref|YP_003403478.1| - 5.7e-09 35.7 0.2 1.1e-08 34.8 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284165199|ref|YP_003403478.1| - 4.9e-06 26.0 0.2 1.4e-05 24.5 0.1 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284165199|ref|YP_003403478.1| - 6.8e-06 25.9 0.0 1.6e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284165199|ref|YP_003403478.1| - 1e-05 25.4 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|284165199|ref|YP_003403478.1| - 6e-05 22.8 0.2 0.0001 22.0 0.2 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284165199|ref|YP_003403478.1| - 8.2e-05 22.4 0.0 0.00014 21.7 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|284165199|ref|YP_003403478.1| - 0.00021 21.0 0.6 0.00056 19.7 0.1 2.0 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_50 PF18024.1 gi|284165199|ref|YP_003403478.1| - 0.00066 19.2 0.1 0.0013 18.2 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284165199|ref|YP_003403478.1| - 0.0013 18.7 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_22 PF13309.6 gi|284165199|ref|YP_003403478.1| - 0.0027 17.7 0.0 0.005 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|284165199|ref|YP_003403478.1| - 0.0033 17.5 0.0 0.0063 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|284165199|ref|YP_003403478.1| - 0.0065 16.4 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family ArsR PF09824.9 gi|284165199|ref|YP_003403478.1| - 0.011 15.3 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_27 PF13463.6 gi|284165199|ref|YP_003403478.1| - 0.016 15.7 0.1 0.028 14.9 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|284165199|ref|YP_003403478.1| - 0.016 15.2 0.1 0.025 14.6 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|284165199|ref|YP_003403478.1| - 0.017 14.9 0.0 0.022 14.6 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_30 PF13556.6 gi|284165199|ref|YP_003403478.1| - 0.02 14.7 0.0 0.039 13.8 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284165199|ref|YP_003403478.1| - 0.02 15.1 0.0 0.044 14.0 0.0 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|284165199|ref|YP_003403478.1| - 0.021 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_ECF PF07638.11 gi|284165199|ref|YP_003403478.1| - 0.027 14.4 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 ECF sigma factor DprA_WH PF17782.1 gi|284165199|ref|YP_003403478.1| - 0.031 14.4 0.2 0.045 13.9 0.2 1.2 1 0 0 1 1 1 0 DprA winged helix domain FUR PF01475.19 gi|284165199|ref|YP_003403478.1| - 0.036 14.2 0.1 0.085 13.0 0.0 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family Rrf2 PF02082.20 gi|284165199|ref|YP_003403478.1| - 0.052 13.9 0.0 0.081 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|284165199|ref|YP_003403478.1| - 0.054 13.3 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 gi|284165199|ref|YP_003403478.1| - 0.056 13.4 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|284165199|ref|YP_003403478.1| - 0.065 13.4 0.2 0.14 12.3 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|284165199|ref|YP_003403478.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT TetR_N PF00440.23 gi|284165199|ref|YP_003403478.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_29 PF13551.6 gi|284165199|ref|YP_003403478.1| - 0.077 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_8 PF02954.19 gi|284165199|ref|YP_003403478.1| - 0.097 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_DeoR PF08220.12 gi|284165199|ref|YP_003403478.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2089 PF09862.9 gi|284165199|ref|YP_003403478.1| - 0.17 11.9 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) NOB1_Zn_bind PF08772.11 gi|284165200|ref|YP_003403479.1| - 0.0087 16.2 0.4 0.45 10.7 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like RecR PF02132.15 gi|284165200|ref|YP_003403479.1| - 0.0095 15.5 1.9 0.4 10.3 0.4 2.2 2 0 0 2 2 2 2 RecR protein DUF2387 PF09526.10 gi|284165200|ref|YP_003403479.1| - 0.093 12.9 1.1 0.099 12.8 0.2 1.5 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) PetG PF02529.15 gi|284165201|ref|YP_003403480.1| - 0.041 13.7 2.1 0.041 13.7 2.1 1.9 1 1 1 2 2 2 0 Cytochrome B6-F complex subunit 5 OCD_Mu_crystall PF02423.15 gi|284165202|ref|YP_003403481.1| - 8.5e-69 231.9 0.4 1e-68 231.6 0.4 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|284165202|ref|YP_003403481.1| - 5.1e-05 23.4 0.0 8.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|284165202|ref|YP_003403481.1| - 0.00015 22.3 0.1 0.00031 21.3 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|284165203|ref|YP_003403482.1| - 1.3e-32 112.5 11.4 1.5e-17 63.9 0.7 3.0 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|284165203|ref|YP_003403482.1| - 1.3e-18 66.6 1.1 1.9e-08 34.0 0.1 3.2 2 0 0 2 2 2 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|284165203|ref|YP_003403482.1| - 0.0073 16.2 3.5 0.014 15.3 3.5 1.5 1 0 0 1 1 1 1 Ion channel Ion_trans PF00520.31 gi|284165203|ref|YP_003403482.1| - 0.13 11.5 1.8 0.18 11.0 1.8 1.1 1 0 0 1 1 1 0 Ion transport protein IRK PF01007.20 gi|284165203|ref|YP_003403482.1| - 0.15 11.9 0.1 0.29 10.9 0.1 1.4 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain DUF35_N PF12172.8 gi|284165204|ref|YP_003403483.1| - 5.1e-11 42.2 2.5 8.9e-11 41.4 2.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|284165204|ref|YP_003403483.1| - 0.0001 22.2 0.3 0.00033 20.6 0.3 2.0 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated ACP_syn_III_C PF08541.10 gi|284165204|ref|YP_003403483.1| - 0.00022 21.3 0.5 0.0012 18.9 0.4 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TF_Zn_Ribbon PF08271.12 gi|284165204|ref|YP_003403483.1| - 0.36 10.4 4.2 2.3 7.8 4.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding FhuF_C PF11575.8 gi|284165204|ref|YP_003403483.1| - 1.5 8.8 4.5 7.1 6.7 0.3 2.4 2 0 0 2 2 2 0 FhuF 2Fe-2S C-terminal domain Thiolase_N PF00108.23 gi|284165205|ref|YP_003403484.1| - 3.7e-22 79.0 0.1 1.2e-21 77.3 0.1 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284165205|ref|YP_003403484.1| - 1.4e-09 37.6 0.1 7.6e-09 35.3 0.1 2.2 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284165205|ref|YP_003403484.1| - 5.9e-07 29.3 1.5 1.1e-06 28.4 1.5 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|284165205|ref|YP_003403484.1| - 0.0022 17.8 1.5 0.11 12.4 0.2 2.9 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DHHA1 PF02272.19 gi|284165206|ref|YP_003403485.1| - 6.1e-15 55.9 0.0 1.1e-14 55.1 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|284165206|ref|YP_003403485.1| - 1e-10 41.7 0.2 2.7e-10 40.4 0.2 1.7 1 1 0 1 1 1 1 DHH family HSP20 PF00011.21 gi|284165207|ref|YP_003403486.1| - 4e-21 75.1 0.2 6.3e-13 48.7 0.0 2.1 1 1 1 2 2 2 2 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|284165207|ref|YP_003403486.1| - 4.7e-10 38.9 0.6 1.1e-09 37.7 0.6 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA DJ-1_PfpI PF01965.24 gi|284165208|ref|YP_003403487.1| - 7.6e-15 55.1 0.1 5.3e-13 49.1 0.1 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|284165208|ref|YP_003403487.1| - 1.1e-09 38.3 0.0 4.1e-09 36.4 0.0 1.9 1 1 0 1 1 1 1 ThiJ/PfpI family-like AstE_AspA PF04952.14 gi|284165210|ref|YP_003403489.1| - 9.8e-15 54.4 0.0 1.1e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PaaB PF06243.11 gi|284165210|ref|YP_003403489.1| - 0.028 14.6 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Phenylacetic acid degradation B LBR_tudor PF09465.10 gi|284165212|ref|YP_003403491.1| - 0.027 14.3 0.1 0.049 13.5 0.1 1.5 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain Tudor_3 PF18115.1 gi|284165212|ref|YP_003403491.1| - 0.13 12.1 0.1 0.23 11.3 0.1 1.5 1 1 0 1 1 1 0 DNA repair protein Crb2 Tudor domain RNA_binding PF01877.17 gi|284165213|ref|YP_003403492.1| - 5.1e-34 117.1 0.1 8e-34 116.5 0.1 1.3 1 0 0 1 1 1 1 RNA binding VAPB_antitox PF02697.14 gi|284165213|ref|YP_003403492.1| - 0.014 16.2 1.4 0.031 15.1 0.2 2.1 2 0 0 2 2 2 0 Putative antitoxin TetR_C_6 PF13977.6 gi|284165214|ref|YP_003403493.1| - 3.1e-20 72.5 3.1 6.9e-20 71.4 3.1 1.6 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|284165214|ref|YP_003403493.1| - 4.3e-12 45.6 0.1 8.7e-12 44.6 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|284165214|ref|YP_003403493.1| - 5.4e-08 33.1 0.4 1.1e-07 32.1 0.1 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|284165214|ref|YP_003403493.1| - 4.7e-05 23.4 1.0 0.0002 21.4 0.8 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 gi|284165214|ref|YP_003403493.1| - 0.00018 21.4 0.0 0.00035 20.5 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|284165214|ref|YP_003403493.1| - 0.00053 20.3 2.8 0.0013 19.0 2.7 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|284165214|ref|YP_003403493.1| - 0.00085 19.6 0.2 0.0022 18.3 0.1 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|284165214|ref|YP_003403493.1| - 0.0085 16.2 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_5 PF01022.20 gi|284165214|ref|YP_003403493.1| - 0.012 15.4 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TetR_C_17 PF17922.1 gi|284165214|ref|YP_003403493.1| - 0.022 14.9 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_24 PF13412.6 gi|284165214|ref|YP_003403493.1| - 0.062 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SPOUT_MTase_2 PF14419.6 gi|284165214|ref|YP_003403493.1| - 0.17 11.2 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 AF2226-like SPOUT RNA Methylase fused to THUMP MatE PF01554.18 gi|284165215|ref|YP_003403494.1| - 9.2e-64 214.0 29.8 1.6e-37 128.7 13.3 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|284165215|ref|YP_003403494.1| - 7.1e-09 35.9 20.8 1.6e-07 31.4 11.5 3.7 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain YniB PF14002.6 gi|284165215|ref|YP_003403494.1| - 0.028 14.2 0.6 0.08 12.7 0.0 1.9 2 0 0 2 2 2 0 YniB-like protein Pmp3 PF01679.17 gi|284165215|ref|YP_003403494.1| - 0.03 14.5 0.1 0.7 10.1 0.0 2.8 2 0 0 2 2 2 0 Proteolipid membrane potential modulator Na_H_Exchanger PF00999.21 gi|284165216|ref|YP_003403495.1| - 3.2e-62 210.5 52.1 3.6e-62 210.3 52.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Band_7 PF01145.25 gi|284165217|ref|YP_003403496.1| - 6.6e-37 127.2 1.4 6.6e-37 127.2 1.4 1.8 2 1 0 2 2 2 1 SPFH domain / Band 7 family SdiA-regulated PF06977.11 gi|284165217|ref|YP_003403496.1| - 0.0077 15.5 1.5 0.018 14.3 1.4 1.6 1 1 0 1 1 1 1 SdiA-regulated Band_7_1 PF13421.6 gi|284165217|ref|YP_003403496.1| - 0.026 14.2 0.1 0.053 13.2 0.1 1.6 1 1 0 1 1 1 0 SPFH domain-Band 7 family YcaO PF02624.16 gi|284165218|ref|YP_003403497.1| - 1.9e-49 168.7 7.2 2.8e-49 168.2 7.2 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding ThiF PF00899.21 gi|284165218|ref|YP_003403497.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 ThiF family Membralin PF09746.9 gi|284165219|ref|YP_003403498.1| - 0.00023 20.4 0.1 0.00026 20.2 0.1 1.1 1 0 0 1 1 1 1 Tumour-associated protein BPD_transp_2 PF02653.16 gi|284165219|ref|YP_003403498.1| - 0.043 13.0 0.0 0.057 12.6 0.0 1.1 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component TAT_signal PF10518.9 gi|284165219|ref|YP_003403498.1| - 0.95 9.4 5.5 2 8.4 5.5 1.6 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lin-8 PF03353.15 gi|284165219|ref|YP_003403498.1| - 5.1 6.6 8.8 9 5.8 8.8 1.5 1 1 0 1 1 1 0 Ras-mediated vulval-induction antagonist Cupin_2 PF07883.11 gi|284165220|ref|YP_003403499.1| - 2.2e-09 36.9 3.6 3.8e-09 36.1 2.2 2.0 1 1 1 2 2 2 1 Cupin domain Cupin_1 PF00190.22 gi|284165220|ref|YP_003403499.1| - 4.8e-05 23.0 0.0 6.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|284165220|ref|YP_003403499.1| - 0.043 13.5 0.4 0.087 12.5 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Trm112p PF03966.16 gi|284165220|ref|YP_003403499.1| - 0.05 14.2 0.2 4.7 7.9 0.0 2.4 1 1 1 2 2 2 0 Trm112p-like protein IBR PF01485.21 gi|284165220|ref|YP_003403499.1| - 0.065 13.5 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_4 PF13717.6 gi|284165220|ref|YP_003403499.1| - 0.07 13.1 0.2 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|284165220|ref|YP_003403499.1| - 0.16 12.1 2.6 0.97 9.6 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|284165220|ref|YP_003403499.1| - 0.43 10.5 5.5 0.16 11.9 2.6 1.7 2 0 0 2 2 2 0 Nudix N-terminal DUF4131 PF13567.6 gi|284165221|ref|YP_003403500.1| - 0.047 13.3 3.0 0.18 11.5 3.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1110 PF06533.12 gi|284165221|ref|YP_003403500.1| - 0.12 12.4 0.4 0.18 11.7 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1110) EI24 PF07264.11 gi|284165221|ref|YP_003403500.1| - 7.6 6.7 12.2 24 5.1 12.2 1.8 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) SSF PF00474.17 gi|284165222|ref|YP_003403501.1| - 8.7e-49 166.5 33.4 1.2e-48 165.9 33.4 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family AAA_18 PF13238.6 gi|284165224|ref|YP_003403503.1| - 6.1e-21 75.3 0.0 8.2e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|284165224|ref|YP_003403503.1| - 5e-20 72.4 0.2 3.7e-19 69.5 0.2 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|284165224|ref|YP_003403503.1| - 1.8e-12 47.8 0.0 3.6e-12 46.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|284165224|ref|YP_003403503.1| - 2.9e-08 34.1 0.1 7.5e-08 32.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|284165224|ref|YP_003403503.1| - 1.6e-07 31.3 0.1 0.00024 20.9 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|284165224|ref|YP_003403503.1| - 4.5e-06 26.9 0.0 7.1e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284165224|ref|YP_003403503.1| - 2.2e-05 24.9 0.0 4.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|284165224|ref|YP_003403503.1| - 0.0001 22.4 0.1 0.00031 20.9 0.1 1.9 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.20 gi|284165224|ref|YP_003403503.1| - 0.00015 21.5 0.0 0.12 12.0 0.0 2.1 1 1 1 2 2 2 2 Dephospho-CoA kinase PRK PF00485.18 gi|284165224|ref|YP_003403503.1| - 0.0049 16.6 0.0 0.12 12.1 0.0 2.2 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|284165224|ref|YP_003403503.1| - 0.0057 16.5 0.0 1 9.2 0.0 2.2 1 1 1 2 2 2 1 Deoxynucleoside kinase AAA_5 PF07728.14 gi|284165224|ref|YP_003403503.1| - 0.012 15.6 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|284165224|ref|YP_003403503.1| - 0.021 15.1 0.1 0.04 14.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|284165224|ref|YP_003403503.1| - 0.022 15.1 0.2 0.063 13.7 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|284165224|ref|YP_003403503.1| - 0.049 13.8 0.3 0.54 10.4 0.3 2.1 1 1 0 1 1 1 0 Shikimate kinase RHH_4 PF13467.6 gi|284165224|ref|YP_003403503.1| - 0.072 13.0 0.4 0.25 11.3 0.3 1.9 1 1 1 2 2 2 0 Ribbon-helix-helix domain RuvB_N PF05496.12 gi|284165224|ref|YP_003403503.1| - 0.097 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|284165224|ref|YP_003403503.1| - 0.12 12.3 0.0 0.49 10.3 0.0 1.8 1 1 0 2 2 2 0 NACHT domain IPPT PF01715.17 gi|284165224|ref|YP_003403503.1| - 0.12 12.2 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 IPP transferase Rad17 PF03215.15 gi|284165224|ref|YP_003403503.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|284165224|ref|YP_003403503.1| - 0.17 12.3 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|284165224|ref|YP_003403503.1| - 0.19 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 NTPase DUF3352 PF11832.8 gi|284165224|ref|YP_003403503.1| - 0.2 10.3 0.1 0.25 9.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3352) AMP-binding PF00501.28 gi|284165225|ref|YP_003403504.1| - 3.2e-84 283.0 0.0 4e-84 282.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284165225|ref|YP_003403504.1| - 3.7e-23 82.3 4.5 2.9e-21 76.2 0.8 3.8 3 1 1 4 4 4 2 AMP-binding enzyme C-terminal domain IMPDH PF00478.25 gi|284165226|ref|YP_003403505.1| - 1e-140 468.7 6.6 1.2e-140 468.5 6.6 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|284165226|ref|YP_003403505.1| - 5.7e-24 84.3 4.6 5.9e-11 42.6 0.4 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|284165226|ref|YP_003403505.1| - 9.3e-14 51.5 1.0 1.7e-07 31.0 0.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|284165226|ref|YP_003403505.1| - 2.6e-09 36.6 2.1 5.4e-09 35.5 2.1 1.5 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|284165226|ref|YP_003403505.1| - 2.8e-05 23.7 2.0 5.9e-05 22.6 2.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|284165226|ref|YP_003403505.1| - 2.8e-05 23.4 3.9 5.2e-05 22.6 2.9 1.8 2 0 0 2 2 2 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|284165226|ref|YP_003403505.1| - 3.9e-05 23.1 6.5 0.00013 21.4 1.5 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|284165226|ref|YP_003403505.1| - 0.00014 21.2 1.1 0.00025 20.3 1.1 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|284165226|ref|YP_003403505.1| - 0.00072 18.7 0.1 0.0014 17.8 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|284165226|ref|YP_003403505.1| - 0.04 13.3 0.3 0.12 11.8 0.1 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator HalOD1 PF18545.1 gi|284165229|ref|YP_003403508.1| - 2.3e-16 59.8 0.4 3.3e-16 59.3 0.4 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 Big_2 PF02368.18 gi|284165229|ref|YP_003403508.1| - 0.016 15.0 0.0 0.091 12.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) TrmB PF01978.19 gi|284165230|ref|YP_003403509.1| - 6.8e-17 61.1 0.1 6.1e-16 58.1 0.0 2.5 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|284165230|ref|YP_003403509.1| - 8.4e-09 34.9 0.0 1.2e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HRDC PF00570.23 gi|284165230|ref|YP_003403509.1| - 0.0064 16.5 0.1 4.3 7.4 0.0 3.2 3 0 0 3 3 3 1 HRDC domain MarR_2 PF12802.7 gi|284165230|ref|YP_003403509.1| - 0.017 15.0 0.3 0.055 13.4 0.1 2.0 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|284165230|ref|YP_003403509.1| - 0.05 14.1 0.7 0.5 10.9 0.0 2.8 2 1 2 4 4 4 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|284165230|ref|YP_003403509.1| - 0.064 13.1 0.2 4.7 7.1 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain VWA PF00092.28 gi|284165230|ref|YP_003403509.1| - 0.099 12.9 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 von Willebrand factor type A domain HTH_10 PF04967.12 gi|284165231|ref|YP_003403510.1| - 1.1e-17 63.6 0.1 1.9e-17 62.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|284165231|ref|YP_003403510.1| - 0.0003 20.6 0.1 0.00067 19.5 0.1 1.5 1 0 0 1 1 1 1 MarR family BAT PF15915.5 gi|284165231|ref|YP_003403510.1| - 0.0026 17.7 0.9 0.0026 17.7 0.9 1.7 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|284165231|ref|YP_003403510.1| - 0.0026 17.3 0.1 0.0047 16.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|284165231|ref|YP_003403510.1| - 0.008 16.4 0.0 0.024 14.9 0.0 1.7 2 0 0 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.6 gi|284165231|ref|YP_003403510.1| - 0.012 15.5 0.5 0.03 14.2 0.5 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_3 PF01381.22 gi|284165231|ref|YP_003403510.1| - 0.086 12.9 0.1 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix HTH_11 PF08279.12 gi|284165231|ref|YP_003403510.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.7 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|284165231|ref|YP_003403510.1| - 0.13 11.9 0.5 0.87 9.3 0.2 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Phage_CI_repr PF07022.13 gi|284165231|ref|YP_003403510.1| - 0.16 12.1 0.1 2.6 8.2 0.1 2.4 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain SPW PF03779.14 gi|284165232|ref|YP_003403511.1| - 1.4e-10 40.6 29.4 2.7e-08 33.2 10.7 2.2 2 0 0 2 2 2 2 SPW repeat Response_reg PF00072.24 gi|284165233|ref|YP_003403512.1| - 7.6e-13 48.6 0.0 9.1e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain zf_UBZ PF18439.1 gi|284165234|ref|YP_003403513.1| - 0.0028 17.2 0.4 0.1 12.2 0.1 2.4 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|284165234|ref|YP_003403513.1| - 0.0046 16.3 4.4 0.073 12.5 0.1 2.7 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.7 gi|284165234|ref|YP_003403513.1| - 0.0048 16.9 4.3 0.013 15.5 4.3 1.9 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|284165234|ref|YP_003403513.1| - 0.011 15.4 2.9 0.39 10.5 0.4 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1272 PF06906.11 gi|284165234|ref|YP_003403513.1| - 0.021 14.9 3.8 0.18 11.9 3.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.6 gi|284165234|ref|YP_003403513.1| - 0.025 14.3 8.3 1.5 8.7 1.6 2.8 2 1 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|284165234|ref|YP_003403513.1| - 0.027 14.4 3.4 2.8 8.0 0.6 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-MIZ PF02891.20 gi|284165234|ref|YP_003403513.1| - 0.028 14.2 2.2 0.039 13.7 2.2 1.2 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger GFA PF04828.14 gi|284165234|ref|YP_003403513.1| - 0.058 13.7 2.1 0.69 10.3 0.2 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.9 gi|284165234|ref|YP_003403513.1| - 0.058 13.5 5.3 0.75 9.9 0.3 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|284165234|ref|YP_003403513.1| - 0.06 13.4 0.4 0.081 12.9 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|284165234|ref|YP_003403513.1| - 0.075 13.1 0.1 0.09 12.8 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.11 gi|284165234|ref|YP_003403513.1| - 0.089 12.7 1.9 6.8 6.7 0.1 2.2 1 1 2 3 3 3 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.16 gi|284165234|ref|YP_003403513.1| - 0.094 12.8 0.6 0.094 12.8 0.6 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|284165234|ref|YP_003403513.1| - 0.1 12.1 4.6 0.81 9.3 4.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Terminase_GpA PF05876.12 gi|284165234|ref|YP_003403513.1| - 0.16 10.4 0.9 0.18 10.3 0.9 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Zn_ribbon_SprT PF17283.2 gi|284165234|ref|YP_003403513.1| - 0.22 11.4 0.4 0.22 11.4 0.4 2.2 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|284165234|ref|YP_003403513.1| - 0.65 10.2 5.7 1.7 8.8 5.7 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-HIT PF04438.16 gi|284165234|ref|YP_003403513.1| - 0.7 9.8 7.6 0.14 12.0 2.5 2.1 2 1 0 2 2 2 0 HIT zinc finger Nudix_N_2 PF14803.6 gi|284165234|ref|YP_003403513.1| - 3.3 7.7 10.6 3.7 7.5 0.8 2.5 1 1 1 2 2 2 0 Nudix N-terminal MarR_2 PF12802.7 gi|284165235|ref|YP_003403514.1| - 2.8e-05 23.9 0.1 3.8e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|284165235|ref|YP_003403514.1| - 0.00036 20.5 0.0 0.00053 19.9 0.0 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|284165235|ref|YP_003403514.1| - 0.00051 20.1 0.0 0.00075 19.6 0.0 1.6 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_20 PF12840.7 gi|284165235|ref|YP_003403514.1| - 0.0067 16.5 0.1 0.04 14.0 0.1 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284165235|ref|YP_003403514.1| - 0.0086 15.6 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AbiEi_4 PF13338.6 gi|284165235|ref|YP_003403514.1| - 0.03 14.5 0.2 0.043 14.0 0.2 1.4 1 1 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_Crp_2 PF13545.6 gi|284165235|ref|YP_003403514.1| - 0.032 14.2 0.1 0.073 13.1 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|284165235|ref|YP_003403514.1| - 0.037 14.4 0.0 0.23 11.9 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator HTH_5 PF01022.20 gi|284165235|ref|YP_003403514.1| - 0.053 13.4 0.0 0.098 12.5 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|284165235|ref|YP_003403514.1| - 0.068 13.1 0.2 4.1 7.4 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|284165235|ref|YP_003403514.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) YjhX_toxin PF09857.9 gi|284165235|ref|YP_003403514.1| - 0.17 11.9 0.0 7.8 6.5 0.0 2.1 1 1 1 2 2 2 0 Putative toxin of bacterial toxin-antitoxin pair HTH_20 PF12840.7 gi|284165236|ref|YP_003403515.1| - 0.00021 21.3 0.1 0.00051 20.1 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284165236|ref|YP_003403515.1| - 0.076 12.8 0.1 0.47 10.3 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284165236|ref|YP_003403515.1| - 0.095 12.6 0.0 0.54 10.2 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Pilin_N PF07790.11 gi|284165237|ref|YP_003403516.1| - 6.7e-16 59.0 3.5 6.7e-16 59.0 3.5 2.0 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|284165238|ref|YP_003403517.1| - 7.8e-16 58.8 6.2 3.5e-15 56.7 6.2 2.1 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal BNR PF02012.20 gi|284165238|ref|YP_003403517.1| - 1 9.6 4.2 3.3 8.1 0.6 3.4 3 0 0 3 3 3 0 BNR/Asp-box repeat Laminin_N PF00055.17 gi|284165242|ref|YP_003403521.1| - 0.042 13.4 0.6 0.048 13.3 0.6 1.1 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) FdhE PF04216.12 gi|284165242|ref|YP_003403521.1| - 0.11 12.3 0.4 0.13 12.2 0.4 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DZR PF12773.7 gi|284165242|ref|YP_003403521.1| - 0.19 11.8 5.6 1.1 9.3 5.6 2.0 1 1 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.13 gi|284165242|ref|YP_003403521.1| - 0.34 8.7 0.7 0.36 8.6 0.7 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.6 gi|284165242|ref|YP_003403521.1| - 0.37 10.8 9.7 0.073 13.0 5.9 1.8 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|284165242|ref|YP_003403521.1| - 0.42 10.4 0.3 0.42 10.4 0.3 2.6 2 1 1 3 3 3 0 zinc-ribbon domain HTH_IclR PF09339.10 gi|284165243|ref|YP_003403522.1| - 0.0028 17.4 0.1 0.0056 16.4 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284165243|ref|YP_003403522.1| - 0.037 14.1 0.1 0.081 13.0 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4777 PF16007.5 gi|284165243|ref|YP_003403522.1| - 0.051 13.8 0.0 0.082 13.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) DUF3267 PF11667.8 gi|284165244|ref|YP_003403523.1| - 0.3 11.4 4.6 1.9 8.8 4.6 2.0 1 1 0 1 1 1 0 Putative zincin peptidase Acetyltransf_1 PF00583.25 gi|284165245|ref|YP_003403524.1| - 3.6e-14 53.0 0.1 6.6e-14 52.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|284165245|ref|YP_003403524.1| - 5.8e-10 39.5 0.0 7.9e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284165245|ref|YP_003403524.1| - 2.6e-06 27.8 0.0 6.3e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284165245|ref|YP_003403524.1| - 2.9e-05 24.8 0.1 4.7e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284165245|ref|YP_003403524.1| - 0.00017 21.5 0.0 0.0003 20.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|284165245|ref|YP_003403524.1| - 0.009 16.1 0.0 0.021 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Acetyltransf_9 PF13527.7 gi|284165245|ref|YP_003403524.1| - 0.029 14.5 0.1 0.075 13.1 0.1 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284165245|ref|YP_003403524.1| - 0.067 13.3 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase UBA_4 PF14555.6 gi|284165245|ref|YP_003403524.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain HisKA_4TM PF16926.5 gi|284165246|ref|YP_003403525.1| - 0.0046 16.5 10.0 0.0092 15.6 10.0 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase Fer2 PF00111.27 gi|284165247|ref|YP_003403526.1| - 1.4e-08 34.5 0.7 2.9e-08 33.6 0.7 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|284165247|ref|YP_003403526.1| - 0.0032 17.5 0.4 0.029 14.4 0.4 2.2 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|284165247|ref|YP_003403526.1| - 0.017 15.1 0.8 0.03 14.3 0.8 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain MMR_HSR1_C PF08438.10 gi|284165248|ref|YP_003403527.1| - 5.2e-28 97.9 0.0 8.2e-28 97.2 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|284165248|ref|YP_003403527.1| - 3e-20 72.4 0.0 2.3e-19 69.6 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|284165248|ref|YP_003403527.1| - 8.4e-12 45.0 0.0 2.1e-11 43.7 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|284165248|ref|YP_003403527.1| - 7.8e-10 38.5 0.1 5.4e-07 29.3 0.0 3.1 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|284165248|ref|YP_003403527.1| - 0.028 14.0 0.1 0.65 9.5 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain UbiA PF01040.18 gi|284165250|ref|YP_003403529.1| - 1e-11 44.7 26.9 1e-11 44.7 26.9 1.8 1 1 0 1 1 1 1 UbiA prenyltransferase family FUSC-like PF12805.7 gi|284165250|ref|YP_003403529.1| - 0.073 12.1 0.2 0.073 12.1 0.2 2.3 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS Pox_P21 PF05313.12 gi|284165250|ref|YP_003403529.1| - 2.7 7.5 6.6 0.47 10.0 0.2 2.1 1 1 1 2 2 2 0 Poxvirus P21 membrane protein TPP_enzyme_N PF02776.18 gi|284165251|ref|YP_003403530.1| - 8.1e-47 159.0 2.4 1.2e-45 155.2 0.1 2.9 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|284165251|ref|YP_003403530.1| - 1.5e-25 89.8 0.0 3.8e-25 88.5 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|284165251|ref|YP_003403530.1| - 6.4e-21 74.5 0.1 1.3e-20 73.5 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain HisKA_7TM PF16927.5 gi|284165252|ref|YP_003403531.1| - 5.7e-45 154.0 18.5 7.2e-45 153.7 18.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|284165252|ref|YP_003403531.1| - 1.6e-15 57.3 0.7 1.6e-15 57.3 0.7 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|284165252|ref|YP_003403531.1| - 6.1e-15 55.0 0.2 1.2e-14 54.1 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|284165252|ref|YP_003403531.1| - 9.6e-11 41.7 0.0 2e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|284165252|ref|YP_003403531.1| - 4e-09 37.0 0.0 1.6e-08 35.0 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|284165252|ref|YP_003403531.1| - 7.9e-06 26.1 0.0 1.6e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|284165252|ref|YP_003403531.1| - 4.3e-05 23.4 0.3 0.00017 21.5 0.3 2.1 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.7 gi|284165252|ref|YP_003403531.1| - 0.00029 21.0 0.8 0.0036 17.4 0.1 2.7 2 1 0 2 2 2 1 PAS fold PepSY_2 PF13670.6 gi|284165252|ref|YP_003403531.1| - 0.086 12.9 0.8 4.4 7.4 0.5 2.8 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain FAD-oxidase_C PF02913.19 gi|284165253|ref|YP_003403532.1| - 7.9e-58 196.0 0.0 1.1e-57 195.5 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|284165253|ref|YP_003403532.1| - 3.3e-40 137.1 0.1 6.1e-40 136.2 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Peptidase_M14 PF00246.24 gi|284165255|ref|YP_003403534.1| - 5.1e-08 33.1 0.0 1.6e-07 31.4 0.0 1.6 1 1 0 1 1 1 1 Zinc carboxypeptidase Bac_luciferase PF00296.20 gi|284165256|ref|YP_003403535.1| - 1.6e-55 188.8 5.9 2.6e-55 188.1 5.9 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase HTH_20 PF12840.7 gi|284165257|ref|YP_003403536.1| - 0.00013 21.9 1.4 0.00076 19.5 1.4 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284165257|ref|YP_003403536.1| - 0.016 15.0 0.1 0.079 12.8 0.1 2.0 1 1 1 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284165257|ref|YP_003403536.1| - 0.021 14.4 0.2 0.1 12.2 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_47 PF16221.5 gi|284165257|ref|YP_003403536.1| - 0.038 13.6 0.1 0.068 12.7 0.1 1.6 1 0 0 1 1 1 0 winged helix-turn-helix ADH_zinc_N_2 PF13602.6 gi|284165258|ref|YP_003403537.1| - 2.8e-14 54.3 0.1 6e-14 53.2 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|284165258|ref|YP_003403537.1| - 3e-13 49.9 0.1 5.4e-13 49.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284165258|ref|YP_003403537.1| - 1.4e-10 41.1 0.0 9e-09 35.2 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain DJ-1_PfpI PF01965.24 gi|284165259|ref|YP_003403538.1| - 5.4e-46 156.4 1.0 6.1e-46 156.2 1.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|284165259|ref|YP_003403538.1| - 0.0012 18.5 0.9 0.0031 17.1 0.9 1.7 1 1 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|284165259|ref|YP_003403538.1| - 0.023 14.3 0.0 0.054 13.1 0.0 1.6 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain ThiJ_like PF17124.5 gi|284165259|ref|YP_003403538.1| - 0.055 13.2 0.1 5.5 6.6 0.0 2.5 1 1 1 2 2 2 0 ThiJ/PfpI family-like Aminotran_1_2 PF00155.21 gi|284165261|ref|YP_003403540.1| - 2.2e-61 208.1 0.0 2.4e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|284165261|ref|YP_003403540.1| - 4.5e-11 42.7 0.0 8.6e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|284165261|ref|YP_003403540.1| - 1.4e-08 34.4 0.0 2.8e-08 33.4 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|284165261|ref|YP_003403540.1| - 3.1e-08 33.0 0.0 4.4e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|284165261|ref|YP_003403540.1| - 2.6e-06 26.2 0.0 3.6e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.7 gi|284165261|ref|YP_003403540.1| - 0.014 14.2 0.1 0.031 13.1 0.1 1.5 2 0 0 2 2 2 0 Alanine-glyoxylate amino-transferase DUF433 PF04255.14 gi|284165262|ref|YP_003403541.1| - 0.066 13.1 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF433) TPP_enzyme_C PF02775.21 gi|284165263|ref|YP_003403542.1| - 2.5e-32 111.8 0.3 3.7e-32 111.2 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|284165263|ref|YP_003403542.1| - 8.7e-20 70.6 0.9 1.7e-19 69.7 0.9 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|284165264|ref|YP_003403543.1| - 8.4e-57 192.6 0.2 1.3e-56 192.0 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|284165264|ref|YP_003403543.1| - 1.9e-41 142.1 0.2 4.9e-41 140.7 0.2 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|284165264|ref|YP_003403543.1| - 8.5e-06 25.5 0.1 1.9e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|284165264|ref|YP_003403543.1| - 0.00029 21.1 0.0 0.00068 19.9 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|284165264|ref|YP_003403543.1| - 0.00068 19.5 0.0 0.0017 18.2 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain FAD_binding_6 PF00970.24 gi|284165265|ref|YP_003403544.1| - 1.7e-09 37.9 0.0 3.7e-09 36.8 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase FAD-binding domain PALP PF00291.25 gi|284165265|ref|YP_003403544.1| - 5.9e-05 22.6 0.4 0.00013 21.5 0.3 1.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peripla_BP_4 PF13407.6 gi|284165265|ref|YP_003403544.1| - 0.0012 18.4 0.1 0.0035 17.0 0.2 1.7 2 0 0 2 2 2 1 Periplasmic binding protein domain adh_short_C2 PF13561.6 gi|284165265|ref|YP_003403544.1| - 0.033 13.7 0.3 0.056 13.0 0.3 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Transketolase_C PF02780.20 gi|284165265|ref|YP_003403544.1| - 0.065 13.1 0.4 0.11 12.3 0.4 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain FAD_binding_9 PF08021.11 gi|284165265|ref|YP_003403544.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Siderophore-interacting FAD-binding domain PLAC9 PF15205.6 gi|284165266|ref|YP_003403545.1| - 0.078 13.4 0.2 0.54 10.7 0.0 2.0 2 0 0 2 2 2 0 Placenta-specific protein 9 Glyoxalase_4 PF13669.6 gi|284165267|ref|YP_003403546.1| - 3e-17 62.8 0.1 3.7e-17 62.6 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|284165267|ref|YP_003403546.1| - 3.8e-13 49.8 0.2 4.4e-13 49.6 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|284165267|ref|YP_003403546.1| - 4.2e-07 30.2 0.9 4.7e-07 30.1 0.9 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|284165267|ref|YP_003403546.1| - 0.0015 19.3 0.1 0.002 18.9 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Aldo_ket_red PF00248.21 gi|284165268|ref|YP_003403547.1| - 3.8e-61 206.9 0.0 5.6e-59 199.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family GSDH PF07995.11 gi|284165269|ref|YP_003403548.1| - 5.6e-29 101.5 1.2 5.9e-14 52.1 0.2 2.7 3 0 0 3 3 3 2 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.20 gi|284165269|ref|YP_003403548.1| - 4.9e-10 39.7 0.1 1.8e-09 37.9 0.0 2.0 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|284165269|ref|YP_003403548.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain TAT_signal PF10518.9 gi|284165269|ref|YP_003403548.1| - 0.019 14.8 7.6 0.04 13.8 7.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NHL PF01436.21 gi|284165269|ref|YP_003403548.1| - 0.17 12.0 0.0 1.9 8.6 0.0 2.9 2 0 0 2 2 2 0 NHL repeat MM_CoA_mutase PF01642.22 gi|284165270|ref|YP_003403549.1| - 4.6e-229 761.2 0.8 5.8e-229 760.9 0.8 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Acetyltransf_1 PF00583.25 gi|284165272|ref|YP_003403551.1| - 1.1e-06 28.9 0.1 1.8e-06 28.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|284165272|ref|YP_003403551.1| - 0.011 15.8 0.0 0.026 14.7 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|284165272|ref|YP_003403551.1| - 0.016 15.7 0.1 0.024 15.1 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M48 PF01435.18 gi|284165273|ref|YP_003403552.1| - 2.2e-27 96.1 0.2 7.2e-27 94.4 0.2 1.7 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|284165273|ref|YP_003403552.1| - 0.0063 15.7 0.0 0.0098 15.1 0.0 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|284165273|ref|YP_003403552.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 SprT-like family MgtE PF01769.16 gi|284165273|ref|YP_003403552.1| - 0.61 10.5 4.3 0.81 10.1 0.5 2.2 2 0 0 2 2 2 0 Divalent cation transporter MDMPI_C PF07398.11 gi|284165273|ref|YP_003403552.1| - 8.3 7.3 11.6 0.28 12.0 4.4 2.3 3 0 0 3 3 3 0 MDMPI C-terminal domain YyzF PF14116.6 gi|284165275|ref|YP_003403554.1| - 3.2 7.8 0.0 3.2 7.8 0.0 3.2 4 0 0 4 4 4 0 YyzF-like protein zf-dskA_traR PF01258.17 gi|284165275|ref|YP_003403554.1| - 6.2 6.9 8.2 18 5.3 0.5 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger HAD_2 PF13419.6 gi|284165276|ref|YP_003403555.1| - 5.3e-20 72.2 0.0 6.6e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284165276|ref|YP_003403555.1| - 4.2e-09 36.4 0.1 9.5e-09 35.2 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|284165276|ref|YP_003403555.1| - 2.4e-08 34.5 0.0 8.6e-08 32.7 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284165276|ref|YP_003403555.1| - 9e-07 29.5 0.1 1.2e-06 29.1 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|284165276|ref|YP_003403555.1| - 0.0028 17.1 0.0 0.15 11.4 0.0 2.7 2 1 0 2 2 2 1 Putative Phosphatase TPR_12 PF13424.6 gi|284165276|ref|YP_003403555.1| - 0.027 14.8 0.0 0.27 11.5 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat NepR PF18557.1 gi|284165276|ref|YP_003403555.1| - 0.04 13.6 1.0 0.74 9.5 0.1 2.9 3 0 0 3 3 3 0 Anti-sigma factor NepR TPR_14 PF13428.6 gi|284165276|ref|YP_003403555.1| - 0.12 13.2 2.0 0.2 12.6 0.1 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|284165276|ref|YP_003403555.1| - 0.19 12.0 0.0 0.47 10.8 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF892 PF05974.12 gi|284165277|ref|YP_003403556.1| - 1.3e-28 100.0 9.8 1.6e-28 99.7 9.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) FlgN PF05130.12 gi|284165277|ref|YP_003403556.1| - 0.015 15.8 5.0 0.043 14.3 1.2 2.7 1 1 1 2 2 2 0 FlgN protein Pyr_redox_2 PF07992.14 gi|284165278|ref|YP_003403557.1| - 2.1e-23 83.0 12.5 2.2e-14 53.4 1.2 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284165278|ref|YP_003403557.1| - 1e-09 38.1 0.0 0.0034 16.7 0.0 3.3 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284165278|ref|YP_003403557.1| - 1.3e-09 38.1 1.7 0.00095 18.8 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284165278|ref|YP_003403557.1| - 1.3e-07 31.1 2.2 6.6e-06 25.5 0.1 2.7 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|284165278|ref|YP_003403557.1| - 4e-07 29.6 4.9 0.00099 18.4 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|284165278|ref|YP_003403557.1| - 4.2e-07 29.0 0.0 5.4e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|284165278|ref|YP_003403557.1| - 4.1e-06 26.1 0.1 0.00016 20.9 0.0 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|284165278|ref|YP_003403557.1| - 6.2e-06 25.6 0.1 3.1e-05 23.3 0.0 2.0 2 1 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|284165278|ref|YP_003403557.1| - 5.9e-05 22.6 2.8 6.5e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|284165278|ref|YP_003403557.1| - 6.3e-05 23.0 0.2 0.79 9.7 0.2 3.0 2 1 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|284165278|ref|YP_003403557.1| - 9.2e-05 22.6 0.0 0.00021 21.4 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|284165278|ref|YP_003403557.1| - 0.00035 19.8 0.3 0.51 9.4 0.0 2.1 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox PF00070.27 gi|284165278|ref|YP_003403557.1| - 0.0017 18.8 0.1 0.067 13.8 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|284165278|ref|YP_003403557.1| - 0.0027 17.1 0.1 0.004 16.5 0.1 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|284165278|ref|YP_003403557.1| - 0.0029 16.7 0.0 0.0048 16.0 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|284165278|ref|YP_003403557.1| - 0.026 13.8 0.1 0.03 13.6 0.1 1.4 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|284165278|ref|YP_003403557.1| - 0.041 14.1 0.2 9.1 6.6 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain MmgE_PrpD PF03972.14 gi|284165279|ref|YP_003403558.1| - 3.8e-124 414.6 1.2 4.3e-124 414.4 1.2 1.0 1 0 0 1 1 1 1 MmgE/PrpD family ComA PF02679.15 gi|284165280|ref|YP_003403559.1| - 1.8e-86 289.6 0.0 2e-86 289.4 0.0 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Xan_ur_permease PF00860.20 gi|284165281|ref|YP_003403560.1| - 2e-85 286.9 44.7 2.4e-85 286.6 44.7 1.1 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.27 gi|284165282|ref|YP_003403561.1| - 9.7e-19 67.4 1.3 1.2e-18 67.1 1.3 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|284165282|ref|YP_003403561.1| - 0.00028 20.4 0.0 0.00034 20.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|284165282|ref|YP_003403561.1| - 0.026 14.0 0.3 0.035 13.6 0.3 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Na_Ca_ex PF01699.24 gi|284165283|ref|YP_003403562.1| - 5.4e-19 68.6 25.9 5e-11 42.8 6.9 2.8 3 0 0 3 3 3 2 Sodium/calcium exchanger protein DAO PF01266.24 gi|284165284|ref|YP_003403563.1| - 6.9e-44 150.8 0.9 9e-44 150.5 0.9 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 gi|284165284|ref|YP_003403563.1| - 3e-15 55.9 0.0 6.8e-15 54.8 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_2 PF00890.24 gi|284165284|ref|YP_003403563.1| - 2.6e-07 30.1 1.5 4.5e-07 29.3 1.5 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284165284|ref|YP_003403563.1| - 5.2e-06 26.6 0.2 2.2e-05 24.6 0.2 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284165284|ref|YP_003403563.1| - 1.1e-05 24.8 1.6 0.00014 21.2 1.1 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|284165284|ref|YP_003403563.1| - 1.6e-05 24.4 0.0 2.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|284165284|ref|YP_003403563.1| - 1.6e-05 24.3 0.2 0.00032 20.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284165284|ref|YP_003403563.1| - 0.00013 21.4 0.5 0.00023 20.7 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284165284|ref|YP_003403563.1| - 0.00052 18.8 1.0 0.00085 18.1 0.4 1.6 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|284165284|ref|YP_003403563.1| - 0.00059 19.3 0.3 0.025 13.9 0.1 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|284165284|ref|YP_003403563.1| - 0.00067 20.2 0.4 0.0018 18.8 0.4 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284165284|ref|YP_003403563.1| - 0.0021 17.4 0.1 0.0038 16.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|284165284|ref|YP_003403563.1| - 0.004 16.1 0.7 0.0071 15.2 0.7 1.3 1 0 0 1 1 1 1 Tryptophan halogenase GIDA PF01134.22 gi|284165284|ref|YP_003403563.1| - 0.0076 15.4 0.2 0.012 14.7 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|284165284|ref|YP_003403563.1| - 0.032 13.5 0.4 0.051 12.9 0.4 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SNF PF00209.18 gi|284165285|ref|YP_003403564.1| - 1.1e-51 176.1 23.6 4.5e-26 91.6 6.1 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family DUF2919 PF11143.8 gi|284165285|ref|YP_003403564.1| - 0.18 12.1 2.8 0.34 11.2 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2919) DJ-1_PfpI PF01965.24 gi|284165287|ref|YP_003403566.1| - 7.7e-51 172.2 0.0 8.9e-51 172.0 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|284165287|ref|YP_003403566.1| - 0.00065 19.5 0.0 0.00084 19.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|284165287|ref|YP_003403566.1| - 0.003 17.3 0.1 0.03 14.0 0.0 2.1 1 1 1 2 2 2 1 ThiJ/PfpI family-like Catalase_C PF18011.1 gi|284165287|ref|YP_003403566.1| - 0.015 14.9 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|284165287|ref|YP_003403566.1| - 0.059 13.0 0.0 0.17 11.5 0.0 1.7 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|284165287|ref|YP_003403566.1| - 0.14 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 CMD PF02627.20 gi|284165288|ref|YP_003403567.1| - 1.1e-13 51.1 1.1 1.3e-13 50.8 0.3 1.6 2 0 0 2 2 2 1 Carboxymuconolactone decarboxylase family Thioredoxin_4 PF13462.6 gi|284165288|ref|YP_003403567.1| - 0.08 13.1 0.0 0.089 12.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|284165288|ref|YP_003403567.1| - 0.087 13.3 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain L_biotic_typeA PF04604.13 gi|284165288|ref|YP_003403567.1| - 0.17 11.8 0.1 0.47 10.4 0.1 1.7 1 0 0 1 1 1 0 Type-A lantibiotic DnaJ_C PF01556.18 gi|284165289|ref|YP_003403568.1| - 2.4e-42 144.5 0.0 3.3e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|284165289|ref|YP_003403568.1| - 6.5e-25 87.0 4.3 1.4e-24 86.0 4.3 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|284165289|ref|YP_003403568.1| - 2.3e-13 50.3 15.7 4.7e-13 49.3 15.7 1.5 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|284165289|ref|YP_003403568.1| - 0.00011 22.1 15.4 0.014 15.3 5.2 2.6 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein DUF5351 PF17302.2 gi|284165289|ref|YP_003403568.1| - 0.032 14.4 21.7 0.93 9.7 0.4 4.5 4 0 0 4 4 4 0 Family of unknown function (DUF5351) RPT PF13446.6 gi|284165289|ref|YP_003403568.1| - 0.12 12.4 0.2 0.26 11.3 0.2 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein DZR PF12773.7 gi|284165289|ref|YP_003403568.1| - 0.19 11.8 12.0 0.61 10.1 12.0 1.8 1 1 1 2 2 2 0 Double zinc ribbon DUF2318 PF10080.9 gi|284165289|ref|YP_003403568.1| - 0.3 11.2 6.1 2.1 8.5 0.7 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) TackOD1 PF18551.1 gi|284165289|ref|YP_003403568.1| - 1.3 8.7 7.4 1 9.0 1.2 2.3 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zinc_ribbon_9 PF14369.6 gi|284165289|ref|YP_003403568.1| - 3.4 8.0 10.7 11 6.3 2.5 3.1 3 0 0 3 3 3 0 zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|284165289|ref|YP_003403568.1| - 5.4 7.1 8.6 11 6.1 0.4 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|284165289|ref|YP_003403568.1| - 6 6.9 12.4 5.1 7.1 3.2 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|284165289|ref|YP_003403568.1| - 6 6.4 9.0 4.1 6.9 2.8 2.6 2 0 0 2 2 2 0 zinc-ribbon domain TAT_signal PF10518.9 gi|284165290|ref|YP_003403569.1| - 0.072 13.0 0.8 0.15 11.9 0.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HSP70 PF00012.20 gi|284165291|ref|YP_003403570.1| - 8.4e-245 813.6 17.4 9.5e-243 806.8 17.4 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|284165291|ref|YP_003403570.1| - 2e-19 69.6 0.2 2e-19 69.6 0.2 2.0 2 0 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|284165291|ref|YP_003403570.1| - 0.017 14.4 0.0 0.093 11.9 0.0 2.1 2 0 0 2 2 2 0 StbA protein FGGY_C PF02782.16 gi|284165291|ref|YP_003403570.1| - 0.029 14.1 0.0 0.081 12.6 0.0 1.7 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain DMRL_synthase PF00885.19 gi|284165291|ref|YP_003403570.1| - 0.22 11.4 1.3 0.3 10.9 0.0 1.8 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase DotU PF09850.9 gi|284165291|ref|YP_003403570.1| - 0.73 9.5 2.3 13 5.4 0.9 2.5 2 0 0 2 2 2 0 Type VI secretion system protein DotU DUF3829 PF12889.7 gi|284165291|ref|YP_003403570.1| - 1.5 8.2 10.3 3.5 7.0 10.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) IFT57 PF10498.9 gi|284165291|ref|YP_003403570.1| - 1.8 7.5 11.2 0.14 11.1 5.9 1.8 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 GrpE PF01025.19 gi|284165292|ref|YP_003403571.1| - 2.2e-44 151.1 10.2 2.2e-44 151.1 10.2 2.2 1 1 1 2 2 2 1 GrpE Exonuc_VII_L PF02601.15 gi|284165292|ref|YP_003403571.1| - 8e-06 25.6 3.6 1.1e-05 25.2 3.6 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit Atg14 PF10186.9 gi|284165292|ref|YP_003403571.1| - 4.8e-05 22.6 13.2 6.9e-05 22.1 13.2 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_13 PF13166.6 gi|284165292|ref|YP_003403571.1| - 0.0001 21.2 9.4 0.00012 20.9 9.4 1.3 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.11 gi|284165292|ref|YP_003403571.1| - 0.00018 20.5 21.1 0.00024 20.1 20.5 1.4 1 1 0 1 1 1 1 Spc7 kinetochore protein DHR10 PF18595.1 gi|284165292|ref|YP_003403571.1| - 0.00075 19.5 22.1 0.002 18.2 22.1 1.7 1 0 0 1 1 1 1 Designed helical repeat protein 10 domain DUF812 PF05667.11 gi|284165292|ref|YP_003403571.1| - 0.00086 18.3 19.3 0.0011 18.0 19.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Phage_HK97_TLTM PF06120.11 gi|284165292|ref|YP_003403571.1| - 0.0009 18.5 10.0 0.0018 17.6 10.0 1.5 1 0 0 1 1 1 1 Tail length tape measure protein DUF948 PF06103.11 gi|284165292|ref|YP_003403571.1| - 0.0021 18.3 8.1 0.0068 16.6 2.7 3.1 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) TACC_C PF05010.14 gi|284165292|ref|YP_003403571.1| - 0.0026 17.6 12.5 0.0042 16.9 12.5 1.3 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal MAD PF05557.13 gi|284165292|ref|YP_003403571.1| - 0.0027 16.2 19.2 0.0035 15.8 19.2 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein CAP_N PF01213.19 gi|284165292|ref|YP_003403571.1| - 0.0032 17.0 2.6 0.0032 17.0 2.6 2.2 1 1 1 2 2 2 1 Adenylate cyclase associated (CAP) N terminal MPS2 PF17060.5 gi|284165292|ref|YP_003403571.1| - 0.0047 16.2 20.6 0.36 10.0 13.7 2.1 1 1 1 2 2 2 2 Monopolar spindle protein 2 IFT57 PF10498.9 gi|284165292|ref|YP_003403571.1| - 0.0059 15.6 9.6 0.0059 15.6 9.6 3.4 2 1 2 4 4 4 1 Intra-flagellar transport protein 57 Bap31_Bap29_C PF18035.1 gi|284165292|ref|YP_003403571.1| - 0.014 15.4 14.6 0.54 10.3 0.0 3.7 3 0 0 3 3 3 0 Bap31/Bap29 cytoplasmic coiled-coil domain Bacillus_HBL PF05791.11 gi|284165292|ref|YP_003403571.1| - 0.017 15.0 8.2 0.64 9.8 2.8 2.4 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) ExsD PF16806.5 gi|284165292|ref|YP_003403571.1| - 0.02 14.8 3.4 0.031 14.2 2.9 1.4 1 1 0 1 1 1 0 Antiactivator protein ExsD Lebercilin PF15619.6 gi|284165292|ref|YP_003403571.1| - 0.028 14.1 21.5 0.05 13.3 21.5 1.4 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease ATG16 PF08614.11 gi|284165292|ref|YP_003403571.1| - 0.028 14.6 31.4 0.27 11.4 30.2 2.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Med9 PF07544.13 gi|284165292|ref|YP_003403571.1| - 0.037 14.1 15.8 0.27 11.4 5.0 3.1 2 1 2 4 4 2 0 RNA polymerase II transcription mediator complex subunit 9 UPF0242 PF06785.11 gi|284165292|ref|YP_003403571.1| - 0.044 13.9 27.3 0.059 13.5 15.8 2.6 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus NPV_P10 PF05531.12 gi|284165292|ref|YP_003403571.1| - 0.054 14.0 10.5 0.62 10.6 7.2 3.0 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein HIP1_clath_bdg PF16515.5 gi|284165292|ref|YP_003403571.1| - 0.054 14.1 23.5 1.9 9.2 6.2 2.5 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Fib_alpha PF08702.10 gi|284165292|ref|YP_003403571.1| - 0.056 13.6 11.6 1.2 9.3 0.4 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family CHASE6_C PF17150.4 gi|284165292|ref|YP_003403571.1| - 0.063 14.0 4.6 0.28 11.9 0.1 2.6 1 1 1 2 2 2 0 C-terminal domain of two-partite extracellular sensor domain Baculo_PEP_C PF04513.12 gi|284165292|ref|YP_003403571.1| - 0.063 13.3 2.8 0.1 12.6 1.3 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Mod_r PF07200.13 gi|284165292|ref|YP_003403571.1| - 0.067 13.3 17.3 0.17 12.0 17.2 1.8 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Mce4_CUP1 PF11887.8 gi|284165292|ref|YP_003403571.1| - 0.072 12.5 1.6 0.14 11.6 1.3 1.6 1 1 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative Herpes_UL6 PF01763.16 gi|284165292|ref|YP_003403571.1| - 0.073 11.6 4.3 0.099 11.1 4.3 1.3 1 0 0 1 1 1 0 Herpesvirus UL6 like EzrA PF06160.12 gi|284165292|ref|YP_003403571.1| - 0.074 11.2 16.7 0.13 10.4 16.5 1.4 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA HAUS6_N PF14661.6 gi|284165292|ref|YP_003403571.1| - 0.089 12.4 8.1 0.14 11.7 8.1 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus ADIP PF11559.8 gi|284165292|ref|YP_003403571.1| - 0.11 12.6 15.9 0.21 11.7 15.9 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF745 PF05335.13 gi|284165292|ref|YP_003403571.1| - 0.12 12.1 18.4 0.47 10.2 18.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF745) BST2 PF16716.5 gi|284165292|ref|YP_003403571.1| - 0.13 12.9 17.4 0.065 13.8 7.4 3.0 1 1 2 3 3 2 0 Bone marrow stromal antigen 2 Golgin_A5 PF09787.9 gi|284165292|ref|YP_003403571.1| - 0.15 11.5 23.2 0.19 11.1 22.6 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 SOG2 PF10428.9 gi|284165292|ref|YP_003403571.1| - 0.22 10.7 8.8 0.3 10.2 8.8 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein DUF1664 PF07889.12 gi|284165292|ref|YP_003403571.1| - 0.34 11.0 11.2 1 9.4 3.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Noelin-1 PF12308.8 gi|284165292|ref|YP_003403571.1| - 0.4 10.7 4.7 0.8 9.7 4.1 1.8 1 1 0 1 1 1 0 Neurogenesis glycoprotein Syntaxin-6_N PF09177.11 gi|284165292|ref|YP_003403571.1| - 0.4 11.3 16.1 0.31 11.6 8.7 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Prominin PF05478.11 gi|284165292|ref|YP_003403571.1| - 0.45 8.4 3.8 0.76 7.7 3.8 1.4 1 0 0 1 1 1 0 Prominin FUSC PF04632.12 gi|284165292|ref|YP_003403571.1| - 0.45 9.0 6.8 0.69 8.4 6.8 1.4 1 0 0 1 1 1 0 Fusaric acid resistance protein family GAS PF13851.6 gi|284165292|ref|YP_003403571.1| - 0.51 9.6 22.6 0.24 10.7 19.2 2.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Fez1 PF06818.15 gi|284165292|ref|YP_003403571.1| - 0.53 10.7 23.2 0.42 11.0 21.7 1.5 1 1 0 1 1 1 0 Fez1 DUF3584 PF12128.8 gi|284165292|ref|YP_003403571.1| - 0.56 7.7 22.1 0.86 7.0 22.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Tweety PF04906.13 gi|284165292|ref|YP_003403571.1| - 0.57 8.8 1.4 0.82 8.3 1.4 1.3 1 0 0 1 1 1 0 Tweety Cep57_MT_bd PF06657.13 gi|284165292|ref|YP_003403571.1| - 0.63 10.5 17.3 0.5 10.9 8.2 2.7 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 LMBR1 PF04791.16 gi|284165292|ref|YP_003403571.1| - 0.63 8.9 6.4 0.86 8.4 6.4 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF16 PF01519.16 gi|284165292|ref|YP_003403571.1| - 0.76 10.3 14.2 0.098 13.1 6.0 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 Laminin_II PF06009.12 gi|284165292|ref|YP_003403571.1| - 0.79 9.7 12.5 1.4 8.9 3.7 2.7 1 1 1 2 2 2 0 Laminin Domain II TMPIT PF07851.13 gi|284165292|ref|YP_003403571.1| - 0.9 8.7 11.9 2.8 7.1 11.9 1.8 1 1 0 1 1 1 0 TMPIT-like protein FlgN PF05130.12 gi|284165292|ref|YP_003403571.1| - 0.94 10.0 17.3 1.6 9.2 14.0 2.2 2 0 0 2 2 2 0 FlgN protein DivIVA PF05103.13 gi|284165292|ref|YP_003403571.1| - 0.98 9.5 20.7 4 7.5 14.3 2.4 1 1 1 2 2 2 0 DivIVA protein PilJ PF13675.6 gi|284165292|ref|YP_003403571.1| - 0.98 9.5 12.9 1.8 8.6 7.4 3.0 2 1 1 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Snapin_Pallidin PF14712.6 gi|284165292|ref|YP_003403571.1| - 1 9.8 13.9 1.2 9.6 9.0 2.8 1 1 2 3 3 3 0 Snapin/Pallidin DUF3552 PF12072.8 gi|284165292|ref|YP_003403571.1| - 1 8.7 27.9 1.1 8.6 25.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF1151 PF06625.11 gi|284165292|ref|YP_003403571.1| - 1.1 9.2 18.1 0.52 10.3 12.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1151) ING PF12998.7 gi|284165292|ref|YP_003403571.1| - 1.2 9.7 13.6 0.77 10.4 2.4 2.3 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Spectrin PF00435.21 gi|284165292|ref|YP_003403571.1| - 1.3 9.6 17.3 2.6 8.6 7.6 2.6 1 1 1 2 2 2 0 Spectrin repeat DLP_helical PF18709.1 gi|284165292|ref|YP_003403571.1| - 1.3 8.2 15.3 0.6 9.3 6.9 2.2 1 1 1 2 2 2 0 Dynamin-like helical domain Cluap1 PF10234.9 gi|284165292|ref|YP_003403571.1| - 1.8 7.9 16.7 3.7 6.9 16.7 1.5 1 1 0 1 1 1 0 Clusterin-associated protein-1 YabA PF06156.13 gi|284165292|ref|YP_003403571.1| - 2 9.1 13.7 6 7.6 10.2 3.0 1 1 2 3 3 3 0 Initiation control protein YabA Tmemb_cc2 PF10267.9 gi|284165292|ref|YP_003403571.1| - 2.1 7.4 22.5 0.27 10.3 15.4 2.0 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein FapA PF03961.13 gi|284165292|ref|YP_003403571.1| - 2.2 6.8 13.4 7 5.1 12.3 1.9 1 1 1 2 2 2 0 Flagellar Assembly Protein A COG2 PF06148.11 gi|284165292|ref|YP_003403571.1| - 2.3 8.3 12.1 5 7.2 10.7 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Phage_GPO PF05929.11 gi|284165292|ref|YP_003403571.1| - 2.4 7.7 15.4 5.6 6.5 14.7 2.0 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Nup54 PF13874.6 gi|284165292|ref|YP_003403571.1| - 2.5 8.2 14.7 2.6 8.1 13.1 1.8 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Csm1_N PF18504.1 gi|284165292|ref|YP_003403571.1| - 2.7 8.4 25.0 1.8 8.9 6.6 3.4 2 1 1 3 3 3 0 Csm1 N-terminal domain KxDL PF10241.9 gi|284165292|ref|YP_003403571.1| - 3.1 8.2 10.0 2.2 8.6 1.0 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF724 PF05266.14 gi|284165292|ref|YP_003403571.1| - 3.3 7.5 13.9 3.4 7.5 12.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) SlyX PF04102.12 gi|284165292|ref|YP_003403571.1| - 3.3 8.4 19.2 3.7 8.2 13.7 3.3 1 1 3 4 4 2 0 SlyX ZapB PF06005.12 gi|284165292|ref|YP_003403571.1| - 3.6 8.1 23.2 0.39 11.2 12.0 2.7 1 1 1 2 2 2 0 Cell division protein ZapB ERM PF00769.19 gi|284165292|ref|YP_003403571.1| - 4.1 7.2 31.9 1.1 9.0 28.3 1.8 1 1 1 2 2 2 0 Ezrin/radixin/moesin family DUF5082 PF16888.5 gi|284165292|ref|YP_003403571.1| - 4.9 7.4 20.3 3.9 7.8 2.8 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) HemX PF04375.14 gi|284165292|ref|YP_003403571.1| - 5 6.3 16.0 15 4.8 16.0 1.8 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Occludin_ELL PF07303.13 gi|284165292|ref|YP_003403571.1| - 6.4 7.6 11.0 10 6.9 8.7 2.3 1 1 2 3 3 2 0 Occludin homology domain Tho2 PF11262.8 gi|284165292|ref|YP_003403571.1| - 6.7 5.8 7.8 11 5.1 7.8 1.3 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 TBCA PF02970.16 gi|284165292|ref|YP_003403571.1| - 7.4 7.0 19.3 8.5 6.8 5.7 2.6 1 1 1 2 2 2 0 Tubulin binding cofactor A USP8_interact PF08941.10 gi|284165292|ref|YP_003403571.1| - 7.7 6.3 6.6 6.1 6.6 4.5 1.9 1 1 1 2 2 2 0 USP8 interacting Seryl_tRNA_N PF02403.22 gi|284165292|ref|YP_003403571.1| - 7.8 6.8 21.7 0.46 10.7 8.7 3.1 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain OmpH PF03938.14 gi|284165292|ref|YP_003403571.1| - 8.4 6.7 21.4 45 4.4 21.4 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) TMF_DNA_bd PF12329.8 gi|284165292|ref|YP_003403571.1| - 9.2 6.4 21.6 4 7.5 14.3 3.0 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding FAM76 PF16046.5 gi|284165292|ref|YP_003403571.1| - 9.3 5.5 18.5 26 4.0 18.4 1.7 1 1 0 1 1 1 0 FAM76 protein ResIII PF04851.15 gi|284165293|ref|YP_003403572.1| - 1.6e-25 90.1 0.0 3.2e-25 89.1 0.0 1.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|284165293|ref|YP_003403572.1| - 7.2e-18 64.7 0.0 9.6e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|284165293|ref|YP_003403572.1| - 1.8e-14 54.0 0.0 7.4e-14 52.0 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|284165293|ref|YP_003403572.1| - 1.2e-12 47.5 2.8 3.3e-12 46.1 2.8 1.9 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|284165293|ref|YP_003403572.1| - 3.7e-06 26.8 0.0 4.7e-05 23.2 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|284165293|ref|YP_003403572.1| - 0.00021 20.1 0.0 0.0014 17.4 0.0 2.0 2 0 0 2 2 2 1 SNF2 family N-terminal domain DUF429 PF04250.13 gi|284165293|ref|YP_003403572.1| - 0.016 15.0 0.1 0.036 13.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF429) Helicase_C_2 PF13307.6 gi|284165293|ref|YP_003403572.1| - 0.07 13.3 0.0 15 5.7 0.0 2.4 2 0 0 2 2 2 0 Helicase C-terminal domain zf-RING_11 PF17123.5 gi|284165294|ref|YP_003403573.1| - 0.3 10.9 1.5 3.4 7.5 1.5 2.1 1 1 1 2 2 2 0 RING-like zinc finger HTH_45 PF14947.6 gi|284165295|ref|YP_003403574.1| - 0.0016 18.4 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|284165295|ref|YP_003403574.1| - 0.011 15.9 0.1 0.026 14.6 0.0 1.7 2 0 0 2 2 2 0 Mrr N-terminal domain MarR_2 PF12802.7 gi|284165295|ref|YP_003403574.1| - 0.027 14.3 0.0 0.054 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|284165295|ref|YP_003403574.1| - 0.053 13.4 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|284165295|ref|YP_003403574.1| - 0.059 13.4 0.0 0.096 12.7 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SMC_Nse1 PF07574.13 gi|284165295|ref|YP_003403574.1| - 0.065 13.1 0.0 0.077 12.9 0.0 1.1 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex DUF4423 PF14394.6 gi|284165295|ref|YP_003403574.1| - 0.1 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|284165295|ref|YP_003403574.1| - 0.15 12.2 0.3 5.8 7.1 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.10 gi|284165295|ref|YP_003403574.1| - 0.16 11.9 0.9 0.29 11.1 0.9 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain T4SS_CagC PF16943.5 gi|284165296|ref|YP_003403575.1| - 0.65 10.2 3.4 0.86 9.8 0.5 2.0 2 0 0 2 2 2 0 Cag pathogenicity island, type IV secretory system DUF326 PF03860.16 gi|284165297|ref|YP_003403576.1| - 7.8e-06 25.7 54.4 0.0018 18.2 7.8 4.6 4 1 0 4 4 4 3 Domain of Unknown Function (DUF326) DEP PF00610.21 gi|284165297|ref|YP_003403576.1| - 0.063 13.4 0.3 0.1 12.7 0.3 1.4 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) SPW PF03779.14 gi|284165298|ref|YP_003403577.1| - 8.6e-09 34.8 20.7 0.00014 21.4 5.6 2.3 2 0 0 2 2 2 2 SPW repeat RHH_1 PF01402.21 gi|284165299|ref|YP_003403578.1| - 2.6e-06 27.2 0.5 4.2e-06 26.5 0.5 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|284165299|ref|YP_003403578.1| - 0.00019 21.6 0.0 0.00023 21.3 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|284165299|ref|YP_003403578.1| - 0.0094 16.3 0.4 0.013 15.9 0.4 1.4 1 1 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH zf-ribbon_3 PF13248.6 gi|284165300|ref|YP_003403579.1| - 0.036 13.5 0.1 0.062 12.7 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Trypsin_2 PF13365.6 gi|284165301|ref|YP_003403580.1| - 9.6e-28 98.0 0.6 8.3e-27 94.9 0.6 2.2 1 1 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|284165301|ref|YP_003403580.1| - 4.1e-13 49.6 0.3 2.3e-09 37.4 0.1 2.2 2 0 0 2 2 2 2 Trypsin Peptidase_S46 PF10459.9 gi|284165301|ref|YP_003403580.1| - 9.3e-08 31.2 1.1 0.00089 18.0 0.5 2.2 2 0 0 2 2 2 2 Peptidase S46 YfiO PF13525.6 gi|284165301|ref|YP_003403580.1| - 0.015 15.0 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein DUF31 PF01732.16 gi|284165301|ref|YP_003403580.1| - 0.016 14.7 3.5 0.3 10.6 0.9 3.0 2 1 1 3 3 3 0 Putative peptidase (DUF31) DUF4192 PF13830.6 gi|284165301|ref|YP_003403580.1| - 0.053 13.6 0.6 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) Peptidase_S32 PF05579.13 gi|284165301|ref|YP_003403580.1| - 0.18 11.0 2.3 4 6.6 0.2 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Trypan_PARP PF05887.11 gi|284165301|ref|YP_003403580.1| - 0.31 11.0 4.9 0.82 9.7 4.9 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DisA_N PF02457.16 gi|284165302|ref|YP_003403581.1| - 4.4e-07 29.5 0.0 8.3e-07 28.6 0.0 1.5 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding DUF790 PF05626.11 gi|284165303|ref|YP_003403582.1| - 9.4e-141 469.0 0.0 1.1e-140 468.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Response_reg PF00072.24 gi|284165304|ref|YP_003403583.1| - 1.5e-19 70.2 0.0 2e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain DUF5553 PF17707.1 gi|284165304|ref|YP_003403583.1| - 0.19 11.1 0.0 0.24 10.8 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5553) Glyoxalase PF00903.25 gi|284165305|ref|YP_003403584.1| - 2e-23 83.0 0.5 1e-14 54.8 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284165305|ref|YP_003403584.1| - 0.0052 17.5 0.5 0.056 14.2 0.1 2.6 2 1 0 2 2 2 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284165305|ref|YP_003403584.1| - 0.011 15.9 2.4 2.6 8.1 0.1 2.9 2 1 1 3 3 3 0 Glyoxalase-like domain EamA PF00892.20 gi|284165306|ref|YP_003403585.1| - 1.3e-29 103.1 28.1 4.2e-19 69.1 12.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|284165306|ref|YP_003403585.1| - 5.1 6.3 10.4 2.6 7.3 2.1 2.2 2 0 0 2 2 2 0 Triose-phosphate Transporter family Abhydrolase_1 PF00561.20 gi|284165307|ref|YP_003403586.1| - 2.6e-11 43.7 0.0 2.2e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284165307|ref|YP_003403586.1| - 9.5e-11 42.7 4.6 1.3e-10 42.3 4.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284165307|ref|YP_003403586.1| - 1.8e-08 34.0 0.0 0.00028 20.2 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|284165307|ref|YP_003403586.1| - 2e-05 24.6 0.0 3.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein DLH PF01738.18 gi|284165307|ref|YP_003403586.1| - 0.0029 17.2 0.0 0.16 11.5 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family Thioesterase PF00975.20 gi|284165307|ref|YP_003403586.1| - 0.027 14.6 0.0 0.042 14.0 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Esterase PF00756.20 gi|284165307|ref|YP_003403586.1| - 0.16 11.6 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative esterase EamA PF00892.20 gi|284165308|ref|YP_003403587.1| - 3e-35 121.4 37.2 3.7e-18 66.0 15.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|284165308|ref|YP_003403587.1| - 0.14 12.2 3.5 0.21 11.6 0.7 2.3 2 0 0 2 2 2 0 Putative transmembrane family 234 Phage_holin_2_1 PF04971.12 gi|284165308|ref|YP_003403587.1| - 1.8 8.6 0.0 1.8 8.6 0.0 3.8 4 0 0 4 4 4 0 Bacteriophage P21 holin S Methyltranf_PUA PF13636.6 gi|284165310|ref|YP_003403589.1| - 5e-06 26.4 0.0 8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|284165311|ref|YP_003403590.1| - 1.6e-52 178.1 0.0 2.3e-52 177.5 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|284165311|ref|YP_003403590.1| - 1.2e-05 25.7 0.0 0.00013 22.4 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|284165311|ref|YP_003403590.1| - 0.00018 21.4 0.0 0.00027 20.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|284165311|ref|YP_003403590.1| - 0.01 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase PAC2 PF09754.9 gi|284165312|ref|YP_003403591.1| - 4.7e-38 131.3 0.0 5.6e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 PAC2 family Hemerythrin PF01814.23 gi|284165313|ref|YP_003403592.1| - 3.7e-21 76.1 22.8 4.2e-21 75.9 21.6 1.7 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 gi|284165313|ref|YP_003403592.1| - 3.3e-16 58.7 0.1 6.9e-16 57.7 0.1 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) Vac_Fusion PF02346.16 gi|284165313|ref|YP_003403592.1| - 0.032 13.8 0.7 23 4.7 0.0 3.4 3 1 1 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 CorA PF01544.18 gi|284165313|ref|YP_003403592.1| - 0.043 13.1 5.6 0.16 11.2 5.1 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein APG6_N PF17675.1 gi|284165313|ref|YP_003403592.1| - 0.99 9.9 7.7 3.7 8.1 7.3 2.2 1 1 1 2 2 2 0 Apg6 coiled-coil region DUF4140 PF13600.6 gi|284165313|ref|YP_003403592.1| - 4.7 7.7 5.7 16 6.0 5.5 1.9 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Methyltransf_11 PF08241.12 gi|284165314|ref|YP_003403593.1| - 3.8e-07 30.7 0.1 1.1e-06 29.1 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284165314|ref|YP_003403593.1| - 6.7e-07 29.9 0.0 1.4e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|284165314|ref|YP_003403593.1| - 0.0029 16.7 0.0 0.0042 16.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase AAA_3 PF07726.11 gi|284165315|ref|YP_003403594.1| - 5.9e-66 220.3 0.1 1.1e-65 219.3 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|284165315|ref|YP_003403594.1| - 2.4e-21 75.3 2.7 5.1e-21 74.3 2.7 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|284165315|ref|YP_003403594.1| - 1.4e-13 51.1 0.0 2.6e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|284165315|ref|YP_003403594.1| - 1.5e-05 25.5 0.0 4.1e-05 24.0 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284165315|ref|YP_003403594.1| - 5e-05 23.1 0.0 0.0003 20.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|284165315|ref|YP_003403594.1| - 0.0033 17.8 0.0 0.56 10.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|284165315|ref|YP_003403594.1| - 0.021 14.2 0.1 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|284165315|ref|YP_003403594.1| - 0.033 14.0 0.0 0.76 9.5 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|284165315|ref|YP_003403594.1| - 0.04 13.6 0.4 0.46 10.2 0.4 2.2 1 1 0 1 1 1 0 AAA domain DUF3071 PF11268.8 gi|284165315|ref|YP_003403594.1| - 0.15 12.1 0.3 0.3 11.1 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) MCM PF00493.23 gi|284165315|ref|YP_003403594.1| - 0.18 10.9 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain DUF4134 PF13572.6 gi|284165316|ref|YP_003403595.1| - 0.0094 16.2 0.4 0.019 15.2 0.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4134) DUF58 PF01882.18 gi|284165317|ref|YP_003403596.1| - 2.8e-20 72.4 0.7 9.8e-20 70.6 0.7 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|284165317|ref|YP_003403596.1| - 1.1e-05 25.6 0.0 4.3e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|284165317|ref|YP_003403596.1| - 7.6e-05 22.9 0.1 7.6e-05 22.9 0.1 2.8 3 1 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|284165317|ref|YP_003403596.1| - 0.037 14.3 0.0 0.088 13.1 0.0 1.6 1 0 0 1 1 1 0 CARDB HTH_39 PF14090.6 gi|284165317|ref|YP_003403596.1| - 0.12 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4129 PF13559.6 gi|284165319|ref|YP_003403598.1| - 1.1e-10 41.6 5.3 1.1e-10 41.6 5.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4245 PF14030.6 gi|284165319|ref|YP_003403598.1| - 0.012 15.6 0.1 0.19 11.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) Aldo_ket_red PF00248.21 gi|284165320|ref|YP_003403599.1| - 4.2e-58 196.9 0.0 9.5e-56 189.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family LacI PF00356.21 gi|284165320|ref|YP_003403599.1| - 0.088 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_Tnp_1 PF01527.20 gi|284165320|ref|YP_003403599.1| - 0.14 12.5 0.0 3.6 8.0 0.0 2.4 2 0 0 2 2 2 0 Transposase GPR_Gpa2_C PF11970.8 gi|284165321|ref|YP_003403600.1| - 0.021 14.9 0.5 0.08 13.0 0.1 2.2 2 0 0 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 C-term SLATT_1 PF18181.1 gi|284165321|ref|YP_003403600.1| - 0.36 10.8 1.7 0.88 9.5 1.3 1.9 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 GPHR_N PF12537.8 gi|284165321|ref|YP_003403600.1| - 4.6 7.4 10.2 0.97 9.6 1.9 2.3 1 1 1 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal SLAC1 PF03595.17 gi|284165322|ref|YP_003403601.1| - 0.0084 15.4 4.7 0.0096 15.2 4.7 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel PAPS_reduct PF01507.19 gi|284165323|ref|YP_003403602.1| - 1.1e-18 67.8 0.0 1.4e-14 54.5 0.0 3.0 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|284165323|ref|YP_003403602.1| - 0.038 13.5 0.0 0.084 12.4 0.0 1.6 2 0 0 2 2 2 0 Diphthamide synthase DUF2150 PF09920.9 gi|284165324|ref|YP_003403603.1| - 2.6e-72 242.8 5.7 2.9e-72 242.6 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) DUF1940 PF09155.10 gi|284165324|ref|YP_003403603.1| - 0.12 12.5 0.6 0.24 11.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1940) TatD_DNase PF01026.21 gi|284165325|ref|YP_003403604.1| - 1.5e-18 67.2 0.0 1.5e-16 60.5 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase EIAV_Rev PF11129.8 gi|284165326|ref|YP_003403605.1| - 0.0042 17.3 0.1 0.0048 17.1 0.1 1.0 1 0 0 1 1 1 1 Rev protein of equine infectious anaemia virus Tropomyosin PF00261.20 gi|284165326|ref|YP_003403605.1| - 0.017 14.5 0.3 0.019 14.3 0.3 1.0 1 0 0 1 1 1 0 Tropomyosin DUF3585 PF12130.8 gi|284165326|ref|YP_003403605.1| - 0.033 14.3 0.1 0.034 14.3 0.1 1.1 1 0 0 1 1 1 0 Bivalent Mical/EHBP Rab binding domain Sugarporin_N PF11471.8 gi|284165326|ref|YP_003403605.1| - 0.06 13.3 2.8 0.089 12.8 2.8 1.2 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension HypA PF01155.19 gi|284165326|ref|YP_003403605.1| - 0.065 13.2 0.1 0.075 13.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Matrilin_ccoil PF10393.9 gi|284165326|ref|YP_003403605.1| - 0.077 12.9 1.2 1.4 8.8 0.4 2.1 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin ABC_tran_CTD PF16326.5 gi|284165326|ref|YP_003403605.1| - 0.093 13.0 0.1 0.11 12.7 0.1 1.1 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF948 PF06103.11 gi|284165326|ref|YP_003403605.1| - 0.11 12.8 0.1 0.14 12.5 0.1 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) XhlA PF10779.9 gi|284165326|ref|YP_003403605.1| - 0.15 12.3 0.2 0.18 12.0 0.2 1.1 1 0 0 1 1 1 0 Haemolysin XhlA MEDS PF14417.6 gi|284165327|ref|YP_003403606.1| - 1.1e-51 174.9 0.8 2.4e-51 173.8 0.8 1.6 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|284165327|ref|YP_003403606.1| - 1.9e-26 92.8 0.0 4.9e-26 91.4 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284165327|ref|YP_003403606.1| - 2.5e-12 46.6 0.0 6.1e-12 45.4 0.0 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain ATPase PF06745.13 gi|284165327|ref|YP_003403606.1| - 0.00013 21.4 0.0 0.00023 20.6 0.0 1.3 1 0 0 1 1 1 1 KaiC NYN PF01936.18 gi|284165328|ref|YP_003403607.1| - 3.2e-18 66.6 0.0 3.8e-18 66.4 0.0 1.0 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.6 gi|284165328|ref|YP_003403607.1| - 0.028 14.9 0.1 2.7 8.5 0.0 2.1 1 1 1 2 2 2 0 CoA binding domain Peptidase_S8 PF00082.22 gi|284165329|ref|YP_003403608.1| - 1.2e-50 172.5 3.9 2.1e-50 171.7 3.9 1.3 1 0 0 1 1 1 1 Subtilase family DUF2398 PF09661.10 gi|284165329|ref|YP_003403608.1| - 0.036 13.3 0.4 0.15 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2398) GST_N_3 PF13417.6 gi|284165330|ref|YP_003403609.1| - 4.4e-12 46.3 0.0 6e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|284165330|ref|YP_003403609.1| - 0.00021 21.4 0.0 0.00053 20.2 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin GST_N_2 PF13409.6 gi|284165330|ref|YP_003403609.1| - 0.0015 18.8 0.0 0.0021 18.3 0.0 1.3 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|284165330|ref|YP_003403609.1| - 0.08 13.3 0.0 0.098 13.0 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain GCV_T PF01571.21 gi|284165331|ref|YP_003403610.1| - 4.3e-83 278.6 0.1 5.9e-83 278.2 0.1 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|284165331|ref|YP_003403610.1| - 2.2e-22 78.8 0.1 4.1e-22 77.9 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|284165331|ref|YP_003403610.1| - 0.0036 17.5 0.5 1.2 9.2 0.0 2.2 2 0 0 2 2 2 2 Sarcosine oxidase, gamma subunit family GCV_H PF01597.19 gi|284165332|ref|YP_003403611.1| - 1.2e-42 144.7 0.0 1.3e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|284165332|ref|YP_003403611.1| - 0.012 15.4 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Biotin-requiring enzyme HTH_31 PF13560.6 gi|284165333|ref|YP_003403612.1| - 6.8e-09 36.0 0.1 2e-08 34.4 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|284165333|ref|YP_003403612.1| - 3.9e-08 33.2 0.0 1.2e-07 31.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|284165333|ref|YP_003403612.1| - 1e-05 25.4 0.0 2.7e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain IspD PF01128.19 gi|284165333|ref|YP_003403612.1| - 0.044 13.5 0.0 0.062 13.0 0.0 1.1 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HTH_26 PF13443.6 gi|284165333|ref|YP_003403612.1| - 0.13 12.8 0.0 0.37 11.2 0.0 1.9 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF3054 PF11255.8 gi|284165334|ref|YP_003403613.1| - 3.8e-25 88.5 6.2 4.6e-25 88.3 6.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) DnaJ PF00226.31 gi|284165335|ref|YP_003403614.1| - 1.9e-12 47.1 0.1 2.9e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|284165335|ref|YP_003403614.1| - 0.015 15.2 0.0 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 A repeated domain in UCH-protein zf-RRPl_C4 PF17026.5 gi|284165335|ref|YP_003403614.1| - 1.2 9.3 9.9 0.064 13.4 1.8 2.4 1 1 1 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type TF_Zn_Ribbon PF08271.12 gi|284165337|ref|YP_003403616.1| - 0.00028 20.3 0.9 0.042 13.4 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding HypA PF01155.19 gi|284165337|ref|YP_003403616.1| - 0.0016 18.4 0.2 0.0018 18.2 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|284165337|ref|YP_003403616.1| - 0.0018 18.1 1.5 0.11 12.4 1.7 2.2 1 1 1 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284165337|ref|YP_003403616.1| - 0.0025 17.9 3.2 0.0025 17.9 3.2 1.6 1 1 1 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284165337|ref|YP_003403616.1| - 0.0045 16.4 1.7 0.87 9.1 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|284165337|ref|YP_003403616.1| - 0.0063 16.5 1.7 0.0086 16.1 1.1 1.6 1 1 1 2 2 2 2 Double zinc ribbon zf-IS66 PF13005.7 gi|284165337|ref|YP_003403616.1| - 0.0068 16.8 1.6 2.4 8.6 0.1 2.2 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.6 gi|284165337|ref|YP_003403616.1| - 0.019 15.3 2.6 0.9 10.0 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|284165337|ref|YP_003403616.1| - 0.02 15.5 1.2 0.27 11.9 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.6 gi|284165337|ref|YP_003403616.1| - 0.021 14.7 1.2 3.2 7.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-RRN7 PF11781.8 gi|284165337|ref|YP_003403616.1| - 0.025 14.2 3.6 2.2 8.0 0.2 2.4 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|284165337|ref|YP_003403616.1| - 0.045 13.7 2.1 5.8 7.0 0.1 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|284165337|ref|YP_003403616.1| - 0.056 13.4 1.5 0.48 10.4 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Anti-TRAP PF15777.5 gi|284165337|ref|YP_003403616.1| - 0.056 13.4 1.7 0.07 13.1 1.7 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein A2L_zn_ribbon PF08792.10 gi|284165337|ref|YP_003403616.1| - 0.069 12.9 0.8 9.8 6.0 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.6 gi|284165337|ref|YP_003403616.1| - 0.094 12.7 4.3 0.8 9.7 0.5 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF1451 PF07295.11 gi|284165337|ref|YP_003403616.1| - 0.19 11.8 0.3 0.22 11.6 0.3 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain DNA_RNApol_7kD PF03604.13 gi|284165337|ref|YP_003403616.1| - 0.2 11.3 2.6 8.9 6.1 0.5 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|284165337|ref|YP_003403616.1| - 0.29 11.1 1.7 1.8 8.5 1.8 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|284165337|ref|YP_003403616.1| - 1.2 8.8 0.1 1.2 8.8 0.1 2.4 3 0 0 3 3 2 0 Ubiquitin-Binding Zinc Finger CoA_binding PF02629.19 gi|284165338|ref|YP_003403617.1| - 4.7e-26 91.3 1.8 9.6e-26 90.3 0.7 2.1 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|284165338|ref|YP_003403617.1| - 7.8e-14 51.8 0.5 1.7e-13 50.7 0.5 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|284165338|ref|YP_003403617.1| - 3.9e-11 42.9 0.0 6.1e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|284165338|ref|YP_003403617.1| - 5.9e-06 26.8 0.0 3e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|284165338|ref|YP_003403617.1| - 0.037 13.6 0.1 0.063 12.8 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATP-grasp_2 PF08442.10 gi|284165339|ref|YP_003403618.1| - 5.4e-64 215.5 0.2 8.8e-64 214.8 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|284165339|ref|YP_003403618.1| - 2.2e-23 82.9 2.8 2.9e-22 79.2 2.2 2.3 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|284165339|ref|YP_003403618.1| - 1.9e-13 50.5 0.2 4.2e-13 49.4 0.2 1.5 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|284165339|ref|YP_003403618.1| - 1.9e-13 50.4 0.8 9.1e-11 41.7 0.3 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|284165339|ref|YP_003403618.1| - 5.6e-08 32.5 0.1 1.1e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|284165339|ref|YP_003403618.1| - 7.8e-07 29.1 0.7 1.2e-06 28.4 0.2 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|284165339|ref|YP_003403618.1| - 0.078 12.6 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain HrcA_DNA-bdg PF03444.15 gi|284165340|ref|YP_003403619.1| - 2.2e-19 68.9 0.0 3e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|284165340|ref|YP_003403619.1| - 3.9e-08 33.5 0.1 6.3e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|284165340|ref|YP_003403619.1| - 2.6e-05 24.1 0.4 0.00057 19.8 0.1 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|284165340|ref|YP_003403619.1| - 0.00091 19.1 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|284165340|ref|YP_003403619.1| - 0.0042 16.9 1.2 0.015 15.1 0.2 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284165340|ref|YP_003403619.1| - 0.02 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284165340|ref|YP_003403619.1| - 0.023 14.8 0.9 0.03 14.4 0.2 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Dimerisation2 PF16864.5 gi|284165340|ref|YP_003403619.1| - 0.052 13.5 0.0 0.088 12.8 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain UbiA PF01040.18 gi|284165341|ref|YP_003403620.1| - 1.8e-22 79.9 16.6 2.5e-22 79.4 16.6 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Trp_oprn_chp PF09534.10 gi|284165341|ref|YP_003403620.1| - 0.098 12.4 4.5 0.17 11.7 0.5 2.3 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DPM3 PF08285.11 gi|284165341|ref|YP_003403620.1| - 0.15 12.3 5.6 0.26 11.5 0.1 2.9 3 0 0 3 3 3 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) PIG-P PF08510.12 gi|284165341|ref|YP_003403620.1| - 0.23 11.4 0.1 0.23 11.4 0.1 2.7 4 1 1 5 5 5 0 PIG-P DUF4242 PF14026.6 gi|284165342|ref|YP_003403621.1| - 3.6e-20 71.9 0.0 4.4e-20 71.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4242) T2SSM PF04612.12 gi|284165342|ref|YP_003403621.1| - 0.027 14.5 0.0 0.032 14.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M ICAT PF06384.11 gi|284165342|ref|YP_003403621.1| - 0.055 13.7 0.1 1.5 9.1 0.3 2.0 1 1 1 2 2 2 0 Beta-catenin-interacting protein ICAT Zn-ribbon_8 PF09723.10 gi|284165344|ref|YP_003403623.1| - 0.0084 16.2 0.8 0.07 13.3 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284165344|ref|YP_003403623.1| - 0.0088 16.0 0.2 0.012 15.6 0.2 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DraK_HK_N PF18092.1 gi|284165344|ref|YP_003403623.1| - 0.022 15.2 0.1 0.022 15.2 0.1 1.2 1 0 0 1 1 1 0 DraK Histidine Kinase N-terminal domain DiS_P_DiS PF06750.13 gi|284165344|ref|YP_003403623.1| - 0.038 14.1 0.0 0.043 13.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Usp PF00582.26 gi|284165345|ref|YP_003403624.1| - 1.9e-29 103.0 0.3 2.1e-29 102.8 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Lactamase_B_2 PF12706.7 gi|284165346|ref|YP_003403625.1| - 3.1e-10 39.9 0.7 5.5e-07 29.3 0.1 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284165346|ref|YP_003403625.1| - 8.2e-09 35.8 0.8 2e-08 34.5 0.8 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|284165346|ref|YP_003403625.1| - 5.9e-05 22.9 0.6 0.0021 17.9 0.1 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Dodecin PF07311.12 gi|284165347|ref|YP_003403626.1| - 1.5e-15 57.2 0.7 1.7e-15 57.0 0.7 1.0 1 0 0 1 1 1 1 Dodecin Form_Nir_trans PF01226.17 gi|284165348|ref|YP_003403627.1| - 1.7e-44 152.0 17.3 1.9e-44 151.8 17.3 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Herpes_LMP1 PF05297.11 gi|284165348|ref|YP_003403627.1| - 9.7 5.3 10.3 5.1 6.2 7.7 2.0 1 1 1 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) MFS_1 PF07690.16 gi|284165349|ref|YP_003403628.1| - 3.1e-18 65.8 50.4 9.3e-14 51.1 34.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Ndc1_Nup PF09531.10 gi|284165349|ref|YP_003403628.1| - 1.1 7.9 2.4 1.5 7.4 2.4 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Macro PF01661.21 gi|284165350|ref|YP_003403629.1| - 8.4e-23 80.7 0.0 1.3e-21 76.9 0.0 2.0 1 1 0 1 1 1 1 Macro domain AP_endonuc_2 PF01261.24 gi|284165350|ref|YP_003403629.1| - 0.0062 16.0 0.0 0.0075 15.7 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Inositol_P PF00459.25 gi|284165351|ref|YP_003403630.1| - 1e-50 172.8 1.8 1.2e-50 172.5 1.8 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|284165351|ref|YP_003403630.1| - 0.033 13.7 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain DUF63 PF01889.17 gi|284165352|ref|YP_003403631.1| - 2.1e-31 110.2 11.8 3e-21 76.8 5.4 2.8 2 1 1 3 3 3 2 Membrane protein of unknown function DUF63 Glyco_hydro_43 PF04616.14 gi|284165353|ref|YP_003403632.1| - 1.2e-08 34.6 0.1 1.7e-08 34.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 DUF1290 PF06947.12 gi|284165354|ref|YP_003403633.1| - 0.045 13.8 1.2 0.087 12.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1290) Tetraspanin PF00335.20 gi|284165354|ref|YP_003403633.1| - 1.3 8.6 9.0 58 3.3 0.1 2.5 1 1 1 2 2 2 0 Tetraspanin family DUF4386 PF14329.6 gi|284165355|ref|YP_003403634.1| - 0.0091 15.9 23.9 0.013 15.4 23.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4386) 7tm_3 PF00003.22 gi|284165355|ref|YP_003403634.1| - 0.1 12.3 2.3 0.13 12.0 1.5 1.6 1 1 0 1 1 1 0 7 transmembrane sweet-taste receptor of 3 GCPR TrkA_N PF02254.18 gi|284165356|ref|YP_003403635.1| - 2e-27 95.8 0.7 3.2e-27 95.1 0.7 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|284165356|ref|YP_003403635.1| - 2.9e-13 49.4 0.9 1.4e-12 47.2 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|284165356|ref|YP_003403635.1| - 2.1e-05 25.0 0.1 8.7e-05 23.0 0.0 2.1 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|284165356|ref|YP_003403635.1| - 0.00013 22.3 0.1 0.00026 21.4 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|284165356|ref|YP_003403635.1| - 0.00021 21.8 0.1 0.00033 21.2 0.1 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|284165356|ref|YP_003403635.1| - 0.00031 21.2 0.1 0.0086 16.6 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|284165356|ref|YP_003403635.1| - 0.0006 20.1 0.2 0.0015 18.7 0.1 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|284165356|ref|YP_003403635.1| - 0.027 14.3 0.2 0.047 13.6 0.2 1.5 1 1 0 1 1 1 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|284165356|ref|YP_003403635.1| - 0.027 14.3 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|284165356|ref|YP_003403635.1| - 0.034 15.0 0.2 0.065 14.1 0.2 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.14 gi|284165356|ref|YP_003403635.1| - 0.036 13.6 0.3 0.092 12.3 0.1 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|284165356|ref|YP_003403635.1| - 0.04 13.2 0.1 0.07 12.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|284165356|ref|YP_003403635.1| - 0.045 13.8 0.0 0.097 12.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|284165356|ref|YP_003403635.1| - 0.055 14.1 0.5 0.22 12.2 0.1 2.1 2 1 0 2 2 2 0 PglD N-terminal domain Peripla_BP_3 PF13377.6 gi|284165356|ref|YP_003403635.1| - 0.067 13.5 0.5 0.13 12.6 0.1 1.7 2 0 0 2 2 2 0 Periplasmic binding protein-like domain Pyr_redox_2 PF07992.14 gi|284165356|ref|YP_003403635.1| - 0.085 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.26 gi|284165356|ref|YP_003403635.1| - 0.13 12.2 0.0 6.2 6.8 0.0 2.1 1 1 0 2 2 2 0 Zinc-binding dehydrogenase NmrA PF05368.13 gi|284165356|ref|YP_003403635.1| - 0.14 11.7 0.1 0.48 9.9 0.0 1.7 1 1 1 2 2 2 0 NmrA-like family NAD_binding_2 PF03446.15 gi|284165356|ref|YP_003403635.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkH PF02386.16 gi|284165357|ref|YP_003403636.1| - 2.3e-74 250.7 16.7 1.2e-73 248.3 16.7 1.8 1 1 0 1 1 1 1 Cation transport protein DUF2417 PF10329.9 gi|284165357|ref|YP_003403636.1| - 0.16 11.4 2.6 7.1 6.0 0.0 2.5 2 0 0 2 2 2 0 Region of unknown function (DUF2417) FUSC PF04632.12 gi|284165358|ref|YP_003403637.1| - 0.085 11.4 0.9 0.096 11.2 0.9 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family TrkH PF02386.16 gi|284165359|ref|YP_003403638.1| - 2.7e-67 227.3 8.0 1.1e-64 218.7 8.0 2.0 1 1 0 1 1 1 1 Cation transport protein DUF1345 PF07077.11 gi|284165359|ref|YP_003403638.1| - 0.011 15.5 3.7 0.053 13.2 0.0 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF1345) TraY PF05509.11 gi|284165360|ref|YP_003403639.1| - 0.057 13.5 0.0 0.082 13.0 0.0 1.2 1 0 0 1 1 1 0 TraY domain AA_permease_2 PF13520.6 gi|284165361|ref|YP_003403640.1| - 5.5e-46 157.3 37.0 7.2e-46 156.9 37.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|284165361|ref|YP_003403640.1| - 8.8e-37 126.8 38.9 3.9e-36 124.7 38.9 1.8 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|284165361|ref|YP_003403640.1| - 1.3e-21 77.6 12.2 1.4e-11 45.1 1.4 3.4 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|284165361|ref|YP_003403640.1| - 2.6e-09 36.4 8.8 2.6e-09 36.4 8.8 2.3 2 1 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.6 gi|284165361|ref|YP_003403640.1| - 0.81 9.8 12.3 0.03 14.4 3.9 3.0 3 0 0 3 3 3 0 C-terminus of AA_permease TrkA_N PF02254.18 gi|284165362|ref|YP_003403641.1| - 2.6e-50 169.6 5.5 1.3e-24 86.7 0.4 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|284165362|ref|YP_003403641.1| - 4.5e-27 93.7 2.1 4.7e-15 55.2 0.0 3.5 3 0 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|284165362|ref|YP_003403641.1| - 2.1e-13 50.6 1.2 2.5e-06 27.9 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|284165362|ref|YP_003403641.1| - 1.4e-11 44.6 0.1 1.1e-05 25.6 0.0 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|284165362|ref|YP_003403641.1| - 3.1e-10 40.2 5.3 4.1e-05 23.6 0.3 3.1 3 0 0 3 3 3 2 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|284165362|ref|YP_003403641.1| - 5.4e-09 36.4 1.0 6.8e-05 23.1 0.3 2.5 2 1 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|284165362|ref|YP_003403641.1| - 1.3e-07 31.2 0.0 0.0084 15.4 0.1 2.4 2 0 0 2 2 2 2 FAD binding domain F420_oxidored PF03807.17 gi|284165362|ref|YP_003403641.1| - 2.2e-07 31.3 0.5 0.013 16.1 0.0 3.2 4 0 0 4 4 2 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|284165362|ref|YP_003403641.1| - 5.6e-07 29.1 0.4 3.9e-06 26.3 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284165362|ref|YP_003403641.1| - 7.6e-07 29.6 0.1 0.048 14.2 0.0 2.9 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284165362|ref|YP_003403641.1| - 1.5e-05 24.4 0.3 0.001 18.4 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|284165362|ref|YP_003403641.1| - 0.00011 21.9 1.1 0.0047 16.6 1.0 3.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|284165362|ref|YP_003403641.1| - 0.00017 21.0 0.1 0.01 15.1 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|284165362|ref|YP_003403641.1| - 0.00036 20.2 0.0 0.003 17.2 0.0 2.3 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284165362|ref|YP_003403641.1| - 0.00037 20.4 0.1 0.37 10.7 0.1 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|284165362|ref|YP_003403641.1| - 0.0027 17.2 0.2 0.021 14.3 0.0 2.5 3 0 0 3 3 2 1 short chain dehydrogenase ThiF PF00899.21 gi|284165362|ref|YP_003403641.1| - 0.0033 16.8 3.6 1.7 8.0 0.1 3.3 3 0 0 3 3 3 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|284165362|ref|YP_003403641.1| - 0.0051 16.2 0.1 3.5 6.9 0.0 2.6 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|284165362|ref|YP_003403641.1| - 0.0099 15.9 0.4 0.29 11.1 0.0 3.2 3 1 1 4 4 4 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.15 gi|284165362|ref|YP_003403641.1| - 0.019 15.2 0.0 1.5 9.0 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|284165362|ref|YP_003403641.1| - 0.019 15.8 1.4 1.5 9.6 0.0 3.3 2 1 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|284165362|ref|YP_003403641.1| - 0.038 14.0 0.0 1.8 8.5 0.0 2.9 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.14 gi|284165362|ref|YP_003403641.1| - 0.042 12.5 0.0 2 7.0 0.0 2.2 2 0 0 2 2 2 0 HI0933-like protein adh_short_C2 PF13561.6 gi|284165362|ref|YP_003403641.1| - 0.053 13.1 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DapB_N PF01113.20 gi|284165362|ref|YP_003403641.1| - 0.12 12.5 1.0 1.5 9.0 0.2 2.8 3 0 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus YflT PF11181.8 gi|284165362|ref|YP_003403641.1| - 0.21 12.1 2.9 4.6 7.8 0.0 3.4 3 1 0 3 3 2 0 Heat induced stress protein YflT Nop PF01798.18 gi|284165363|ref|YP_003403642.1| - 2.7e-39 135.0 0.0 3.5e-39 134.6 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HutP PF09021.11 gi|284165363|ref|YP_003403642.1| - 0.013 15.9 0.4 0.18 12.1 0.1 2.2 2 0 0 2 2 2 0 HutP Fibrillarin PF01269.17 gi|284165364|ref|YP_003403643.1| - 3.7e-56 189.8 0.0 4.3e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Trp_oprn_chp PF09534.10 gi|284165365|ref|YP_003403644.1| - 0.00023 21.0 0.3 0.0004 20.2 0.3 1.4 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PAS_7 PF12860.7 gi|284165365|ref|YP_003403644.1| - 0.041 14.0 0.0 0.065 13.4 0.0 1.4 1 0 0 1 1 1 0 PAS fold DUF4179 PF13786.6 gi|284165365|ref|YP_003403644.1| - 0.11 12.9 6.3 0.18 12.3 4.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4179) PepSY_2 PF13670.6 gi|284165365|ref|YP_003403644.1| - 0.33 11.0 1.9 0.54 10.3 0.8 1.9 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF4969 PF16339.5 gi|284165365|ref|YP_003403644.1| - 2.5 8.5 9.4 2.9 8.3 0.5 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4969) AMP-binding PF00501.28 gi|284165366|ref|YP_003403645.1| - 1.8e-112 376.0 0.0 2.1e-112 375.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284165366|ref|YP_003403645.1| - 1.5e-21 77.1 0.4 4.3e-21 75.7 0.4 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain GCS2 PF04107.13 gi|284165367|ref|YP_003403646.1| - 7e-76 255.4 0.2 8.2e-76 255.1 0.2 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|284165367|ref|YP_003403646.1| - 0.056 13.1 0.0 7.2 6.2 0.0 2.3 2 0 0 2 2 2 0 Putative amidoligase enzyme TrmB PF01978.19 gi|284165368|ref|YP_003403647.1| - 2.3e-07 30.6 0.1 3.7e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|284165368|ref|YP_003403647.1| - 2.9e-05 23.5 0.0 5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284165368|ref|YP_003403647.1| - 0.045 13.8 0.1 0.088 12.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|284165368|ref|YP_003403647.1| - 0.053 13.2 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|284165368|ref|YP_003403647.1| - 0.12 12.2 0.1 0.21 11.4 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|284165368|ref|YP_003403647.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Peptidase_M24 PF00557.24 gi|284165369|ref|YP_003403648.1| - 4.9e-11 42.7 1.6 7.1e-11 42.2 1.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|284165369|ref|YP_003403648.1| - 0.004 17.8 0.0 0.011 16.4 0.0 1.8 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain COX15-CtaA PF02628.15 gi|284165370|ref|YP_003403649.1| - 2.2e-07 30.2 24.2 0.0032 16.6 20.3 3.1 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein CcmD PF04995.14 gi|284165370|ref|YP_003403649.1| - 0.087 12.9 0.4 0.087 12.9 0.4 3.6 4 0 0 4 4 4 0 Heme exporter protein D (CcmD) DUF997 PF06196.12 gi|284165370|ref|YP_003403649.1| - 0.19 11.7 3.8 0.37 10.8 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF997) DUF2070 PF09843.9 gi|284165370|ref|YP_003403649.1| - 4.4 5.5 14.8 5.8 5.1 14.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) MadL PF03817.13 gi|284165370|ref|YP_003403649.1| - 4.8 7.3 13.4 0.081 13.0 5.2 2.2 3 0 0 3 3 3 0 Malonate transporter MadL subunit DUF4231 PF14015.6 gi|284165370|ref|YP_003403649.1| - 7.9 7.0 13.6 16 6.0 9.2 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) YdjM PF04307.14 gi|284165371|ref|YP_003403650.1| - 1e-11 44.5 12.8 2.7e-11 43.1 12.8 1.6 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase HTH_10 PF04967.12 gi|284165372|ref|YP_003403651.1| - 3e-16 58.9 0.1 4.8e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284165372|ref|YP_003403651.1| - 5.7e-16 58.8 4.3 5.7e-16 58.8 4.3 2.1 2 0 0 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|284165372|ref|YP_003403651.1| - 1.7e-07 30.6 0.2 8.9e-07 28.3 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284165372|ref|YP_003403651.1| - 0.0015 18.4 0.2 0.0035 17.2 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|284165372|ref|YP_003403651.1| - 0.0026 17.6 0.4 0.0066 16.3 0.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|284165372|ref|YP_003403651.1| - 0.032 13.9 0.0 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|284165372|ref|YP_003403651.1| - 0.047 13.2 0.1 0.086 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF389 PF04087.14 gi|284165373|ref|YP_003403652.1| - 8.9e-34 116.6 17.6 8.9e-34 116.6 17.6 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF3487 PF11990.8 gi|284165373|ref|YP_003403652.1| - 0.035 14.0 1.1 0.035 14.0 1.1 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF3487) UDG PF03167.19 gi|284165374|ref|YP_003403653.1| - 1.2e-10 41.6 0.0 1.5e-10 41.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Peptidase_S8 PF00082.22 gi|284165375|ref|YP_003403654.1| - 5.8e-42 144.0 8.1 8.2e-42 143.5 8.1 1.1 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|284165375|ref|YP_003403654.1| - 0.0054 16.5 0.6 0.0054 16.5 0.6 4.0 5 0 0 5 5 5 1 TAT (twin-arginine translocation) pathway signal sequence DnaJ PF00226.31 gi|284165376|ref|YP_003403655.1| - 2.5e-20 72.3 2.2 3.7e-20 71.8 2.2 1.2 1 0 0 1 1 1 1 DnaJ domain FSA_C PF10479.9 gi|284165376|ref|YP_003403655.1| - 0.4 8.8 16.3 0.56 8.3 16.3 1.2 1 0 0 1 1 1 0 Fragile site-associated protein C-terminus CC190 PF15768.5 gi|284165376|ref|YP_003403655.1| - 4.9 7.2 4.4 7.5 6.5 4.4 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 190 IMS PF00817.20 gi|284165377|ref|YP_003403656.1| - 3e-38 131.2 0.0 4.9e-38 130.5 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|284165377|ref|YP_003403656.1| - 7.6e-11 42.7 0.0 3.4e-10 40.6 0.0 2.1 3 0 0 3 3 3 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|284165377|ref|YP_003403656.1| - 1.7e-05 24.9 0.0 3.3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|284165377|ref|YP_003403656.1| - 0.0002 21.9 0.0 0.00072 20.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|284165377|ref|YP_003403656.1| - 0.0017 18.1 0.0 0.0038 17.0 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|284165377|ref|YP_003403656.1| - 0.015 15.5 0.0 0.033 14.4 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus FolB PF02152.18 gi|284165377|ref|YP_003403656.1| - 0.035 14.7 0.2 31 5.2 0.0 3.3 3 1 0 3 3 3 0 Dihydroneopterin aldolase HIPIP PF01355.17 gi|284165378|ref|YP_003403657.1| - 4.4e-05 23.7 1.4 4.4e-05 23.7 1.4 1.6 2 0 0 2 2 2 1 High potential iron-sulfur protein Ferredoxin_N PF16947.5 gi|284165379|ref|YP_003403658.1| - 3.5e-32 110.3 3.9 1.3e-31 108.4 3.9 2.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|284165379|ref|YP_003403658.1| - 2.8e-14 53.5 22.6 1.3e-08 35.3 6.3 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284165379|ref|YP_003403658.1| - 1.7e-13 50.4 17.6 8e-09 35.5 3.7 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|284165379|ref|YP_003403658.1| - 1.3e-12 47.7 15.3 3.2e-11 43.2 4.0 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284165379|ref|YP_003403658.1| - 1e-09 38.4 23.1 8.7e-07 29.0 4.3 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284165379|ref|YP_003403658.1| - 2.5e-07 30.2 34.8 9.6e-05 22.0 3.5 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284165379|ref|YP_003403658.1| - 2.3e-06 27.4 32.4 0.0011 18.9 2.9 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284165379|ref|YP_003403658.1| - 8e-05 22.5 10.2 0.00026 20.9 1.9 4.6 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284165379|ref|YP_003403658.1| - 0.0014 19.5 21.3 0.38 11.7 0.8 4.5 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|284165379|ref|YP_003403658.1| - 0.0026 18.2 25.2 0.0088 16.5 6.0 3.9 2 2 2 4 4 4 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284165379|ref|YP_003403658.1| - 0.0026 18.3 20.9 0.068 13.7 2.7 3.8 2 1 3 5 5 5 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|284165379|ref|YP_003403658.1| - 0.0038 18.1 39.7 0.58 11.2 5.1 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|284165379|ref|YP_003403658.1| - 0.15 12.6 29.2 0.096 13.2 3.0 4.5 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|284165379|ref|YP_003403658.1| - 4.9 8.0 20.4 1.5 9.6 0.4 4.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|284165379|ref|YP_003403658.1| - 8.4 6.6 29.2 3.1 8.0 11.6 3.7 2 2 1 3 3 3 0 4Fe-4S dicluster domain Copper-bind PF00127.20 gi|284165380|ref|YP_003403659.1| - 5.6e-06 26.7 0.0 9.2e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|284165380|ref|YP_003403659.1| - 0.073 12.9 0.2 0.15 12.0 0.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5518 PF17647.1 gi|284165381|ref|YP_003403660.1| - 4.8e-14 52.5 34.9 5.5e-14 52.3 34.9 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) ABC2_membrane_3 PF12698.7 gi|284165381|ref|YP_003403660.1| - 0.31 10.1 9.4 14 4.6 10.9 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein TFIIS_C PF01096.18 gi|284165382|ref|YP_003403661.1| - 1.1e-16 60.3 4.4 1.1e-16 60.3 4.4 2.5 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|284165382|ref|YP_003403661.1| - 0.00021 21.1 2.0 0.00021 21.1 2.0 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|284165382|ref|YP_003403661.1| - 0.004 17.1 0.6 0.004 17.1 0.6 2.1 2 1 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284165382|ref|YP_003403661.1| - 0.0078 16.1 13.4 0.043 13.7 3.2 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 gi|284165382|ref|YP_003403661.1| - 0.12 12.3 8.4 0.64 10.1 0.3 3.4 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger Prok-RING_1 PF14446.6 gi|284165382|ref|YP_003403661.1| - 0.25 11.3 10.8 0.12 12.3 1.3 3.2 3 1 0 3 3 3 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|284165382|ref|YP_003403661.1| - 0.26 11.4 12.9 1.9e+02 2.2 12.9 2.9 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|284165382|ref|YP_003403661.1| - 0.26 10.7 13.1 2.8 7.5 0.2 4.0 4 0 0 4 4 4 0 zinc-ribbon domain ADK_lid PF05191.14 gi|284165382|ref|YP_003403661.1| - 0.26 11.3 9.9 19 5.3 0.2 4.0 3 1 0 3 3 3 0 Adenylate kinase, active site lid DNA_RNApol_7kD PF03604.13 gi|284165382|ref|YP_003403661.1| - 0.4 10.4 0.2 0.4 10.4 0.2 3.3 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|284165382|ref|YP_003403661.1| - 0.43 10.5 0.3 0.43 10.5 0.3 2.9 3 1 0 3 3 3 0 zinc-ribbon domain zf-C4pol PF14260.6 gi|284165382|ref|YP_003403661.1| - 1.4 9.4 10.6 5.5 7.5 2.2 2.5 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf_UBZ PF18439.1 gi|284165382|ref|YP_003403661.1| - 1.5 8.5 12.6 1.8 8.2 0.1 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Nudix_N_2 PF14803.6 gi|284165382|ref|YP_003403661.1| - 2.8 7.9 12.4 9.7 6.2 2.1 4.2 3 1 1 4 4 4 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|284165382|ref|YP_003403661.1| - 3.7 7.1 14.4 14 5.3 0.6 4.2 3 2 0 3 3 3 0 TFIIB zinc-binding eIF-5_eIF-2B PF01873.17 gi|284165382|ref|YP_003403661.1| - 4.7 7.1 7.1 2.3 8.1 3.9 2.2 1 1 1 2 2 2 0 Domain found in IF2B/IF5 HypA PF01155.19 gi|284165382|ref|YP_003403661.1| - 5 7.2 10.5 2.2 8.3 1.4 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_recom PF13408.6 gi|284165382|ref|YP_003403661.1| - 9.5 6.8 9.6 24 5.5 2.1 3.0 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain PHD PF00628.29 gi|284165382|ref|YP_003403661.1| - 9.7 6.2 12.3 2 8.4 2.3 2.6 2 1 0 2 2 2 0 PHD-finger DUF4699 PF15770.5 gi|284165384|ref|YP_003403663.1| - 0.11 12.2 2.1 0.2 11.4 2.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4699) Spc7 PF08317.11 gi|284165384|ref|YP_003403663.1| - 0.17 10.7 0.1 0.31 9.9 0.1 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein Zn-ribbon_8 PF09723.10 gi|284165384|ref|YP_003403663.1| - 0.19 11.9 0.5 0.53 10.4 0.5 1.7 1 0 0 1 1 1 0 Zinc ribbon domain MIF4G_like_2 PF09090.11 gi|284165384|ref|YP_003403663.1| - 0.33 10.4 0.9 1.9 7.9 0.6 1.8 1 1 1 2 2 2 0 MIF4G like ATPase PF06745.13 gi|284165385|ref|YP_003403664.1| - 3.4e-09 36.4 0.0 0.0003 20.2 0.1 2.1 2 0 0 2 2 2 2 KaiC Rad51 PF08423.11 gi|284165385|ref|YP_003403664.1| - 0.0027 17.0 0.0 0.053 12.8 0.0 2.1 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.6 gi|284165385|ref|YP_003403664.1| - 0.0028 17.3 2.6 0.087 12.4 0.1 2.3 2 0 0 2 2 2 2 AAA domain GHMP_kinases_N PF00288.26 gi|284165386|ref|YP_003403665.1| - 6.9e-05 23.0 0.6 0.00028 21.0 0.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|284165386|ref|YP_003403665.1| - 7.9e-05 23.0 0.1 0.00015 22.0 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal Alpha-amylase PF00128.24 gi|284165387|ref|YP_003403666.1| - 4.7e-21 75.7 9.1 9e-21 74.8 3.8 3.1 2 1 0 2 2 2 1 Alpha amylase, catalytic domain DUF1939 PF09154.10 gi|284165387|ref|YP_003403666.1| - 7.1e-14 51.7 3.6 7.1e-14 51.7 3.6 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) Glycos_transf_2 PF00535.26 gi|284165388|ref|YP_003403667.1| - 1.5e-21 77.0 0.0 2.2e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284165388|ref|YP_003403667.1| - 2.1e-18 67.1 0.1 1.9e-17 63.9 0.1 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|284165388|ref|YP_003403667.1| - 3.7e-12 46.3 0.0 2.1e-07 30.7 0.0 2.0 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|284165388|ref|YP_003403667.1| - 6.6e-12 45.7 0.0 9.7e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|284165388|ref|YP_003403667.1| - 0.00015 21.3 0.0 0.00026 20.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.7 gi|284165388|ref|YP_003403667.1| - 0.0018 18.6 0.2 0.0028 18.0 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_7C PF02709.14 gi|284165388|ref|YP_003403667.1| - 0.2 11.4 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase NTP_transf_3 PF12804.7 gi|284165390|ref|YP_003403669.1| - 9.7e-35 120.3 2.8 1.3e-34 119.9 2.8 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|284165390|ref|YP_003403669.1| - 0.011 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Cytidylyltransferase NTP_transferase PF00483.23 gi|284165390|ref|YP_003403669.1| - 0.048 13.2 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase ILVD_EDD PF00920.21 gi|284165391|ref|YP_003403670.1| - 2.3e-197 656.7 3.6 2.6e-197 656.5 3.6 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|284165391|ref|YP_003403670.1| - 0.17 12.0 0.3 1.5 9.0 0.0 2.3 2 0 0 2 2 2 0 DGC domain CTP_transf_like PF01467.26 gi|284165393|ref|YP_003403672.1| - 1.4e-18 67.5 0.1 1.6e-18 67.3 0.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|284165393|ref|YP_003403672.1| - 0.074 12.9 0.1 0.15 11.9 0.1 1.7 2 0 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.6 gi|284165394|ref|YP_003403673.1| - 4.6e-09 36.1 0.0 6.3e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|284165394|ref|YP_003403673.1| - 0.0091 15.9 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 RadC-like JAB domain PTA_PTB PF01515.19 gi|284165395|ref|YP_003403674.1| - 9.3e-92 307.7 0.0 1.3e-91 307.3 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|284165395|ref|YP_003403674.1| - 6.4e-30 104.3 0.1 1e-27 97.1 0.1 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|284165395|ref|YP_003403674.1| - 2.2e-21 76.3 0.3 6.2e-21 74.8 0.3 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain tRNA_anti-codon PF01336.25 gi|284165396|ref|YP_003403675.1| - 1.9e-08 34.2 0.0 3.8e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|284165396|ref|YP_003403675.1| - 0.0014 18.8 0.4 0.0027 17.9 0.4 1.5 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|284165396|ref|YP_003403675.1| - 0.014 15.8 0.2 0.047 14.0 0.2 1.9 1 0 0 1 1 1 0 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|284165396|ref|YP_003403675.1| - 0.051 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Rib_5-P_isom_A PF06026.14 gi|284165396|ref|YP_003403675.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) S1_2 PF13509.6 gi|284165396|ref|YP_003403675.1| - 0.13 12.3 0.1 0.35 11.0 0.1 1.7 1 0 0 1 1 1 0 S1 domain Response_reg PF00072.24 gi|284165397|ref|YP_003403676.1| - 2e-09 37.6 0.0 2.4e-09 37.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HhH-GPD PF00730.25 gi|284165399|ref|YP_003403678.1| - 4.2e-15 56.1 0.0 6.4e-15 55.5 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|284165399|ref|YP_003403678.1| - 1.8e-08 33.8 0.0 3.9e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif FMN_red PF03358.15 gi|284165400|ref|YP_003403679.1| - 4.6e-35 120.7 0.0 5.5e-35 120.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|284165400|ref|YP_003403679.1| - 1.3e-11 44.6 0.0 2.2e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin-like fold MeMO_Hyd_G PF02964.16 gi|284165400|ref|YP_003403679.1| - 0.011 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Methane monooxygenase, hydrolase gamma chain BUD22 PF09073.10 gi|284165402|ref|YP_003403681.1| - 0.38 10.0 7.5 0.41 9.9 7.5 1.1 1 0 0 1 1 1 0 BUD22 N6_N4_Mtase PF01555.18 gi|284165403|ref|YP_003403682.1| - 6.9e-35 120.8 0.0 8.6e-35 120.5 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|284165403|ref|YP_003403682.1| - 0.0038 16.9 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Luteo_P1-P2 PF08467.10 gi|284165403|ref|YP_003403682.1| - 0.019 14.2 0.0 4.6 6.4 0.0 2.9 3 0 0 3 3 3 0 Luteovirus RNA polymerase P1-P2/replicase Cupin_2 PF07883.11 gi|284165404|ref|YP_003403683.1| - 9.1e-10 38.1 1.2 1.3e-09 37.6 1.2 1.2 1 0 0 1 1 1 1 Cupin domain PCO_ADO PF07847.12 gi|284165404|ref|YP_003403683.1| - 0.0012 18.3 0.0 0.0013 18.2 0.0 1.2 1 0 0 1 1 1 1 PCO_ADO Cupin_3 PF05899.12 gi|284165404|ref|YP_003403683.1| - 0.014 15.1 0.2 0.02 14.6 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|284165404|ref|YP_003403683.1| - 0.025 14.2 0.0 0.031 13.9 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_1 PF00190.22 gi|284165404|ref|YP_003403683.1| - 0.068 12.8 0.0 0.12 12.0 0.0 1.5 1 1 0 1 1 1 0 Cupin PAS_4 PF08448.10 gi|284165405|ref|YP_003403684.1| - 1.1e-35 122.2 11.4 7.9e-16 58.3 0.1 4.0 3 1 0 3 3 3 3 PAS fold BAT PF15915.5 gi|284165405|ref|YP_003403684.1| - 5.2e-33 114.1 8.9 5.2e-33 114.1 8.9 3.6 4 0 0 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|284165405|ref|YP_003403684.1| - 6.4e-28 97.8 7.9 1.1e-16 61.4 0.1 4.3 4 0 0 4 4 4 2 GAF domain PAS PF00989.25 gi|284165405|ref|YP_003403684.1| - 1.9e-21 76.2 0.1 9.9e-08 32.0 0.0 3.8 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|284165405|ref|YP_003403684.1| - 2.3e-20 72.1 0.0 3.2e-19 68.5 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain PAS_9 PF13426.7 gi|284165405|ref|YP_003403684.1| - 9.3e-15 54.8 0.0 7.5e-06 26.1 0.0 4.0 3 1 0 3 3 3 3 PAS domain GAF_3 PF13492.6 gi|284165405|ref|YP_003403684.1| - 1.1e-12 48.4 0.0 4.2e-06 27.1 0.0 2.9 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.12 gi|284165405|ref|YP_003403684.1| - 2.1e-11 44.0 0.1 7.9e-09 35.7 0.0 3.2 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|284165405|ref|YP_003403684.1| - 1.6e-10 40.7 0.4 0.001 19.1 0.0 3.8 3 0 0 3 3 3 2 PAS domain GAF PF01590.26 gi|284165405|ref|YP_003403684.1| - 3.6e-08 34.1 0.0 0.00049 20.7 0.0 3.1 3 0 0 3 3 3 2 GAF domain PAS_11 PF14598.6 gi|284165405|ref|YP_003403684.1| - 1.4e-05 25.2 0.0 9.5e-05 22.5 0.0 2.3 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.7 gi|284165405|ref|YP_003403684.1| - 0.00018 21.6 0.2 0.0098 16.1 0.0 3.8 4 1 0 4 4 4 1 PAS fold Sigma70_r4 PF04545.16 gi|284165405|ref|YP_003403684.1| - 0.00041 19.8 0.0 0.0025 17.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HalOD1 PF18545.1 gi|284165406|ref|YP_003403685.1| - 1.8e-25 89.0 0.3 2.2e-25 88.7 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HalOD1 PF18545.1 gi|284165407|ref|YP_003403686.1| - 6.3e-22 77.6 0.7 9.4e-22 77.1 0.7 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 Macoilin PF09726.9 gi|284165408|ref|YP_003403687.1| - 2.7 6.4 8.5 3.5 6.1 8.5 1.1 1 0 0 1 1 1 0 Macoilin family DUF2570 PF10828.8 gi|284165408|ref|YP_003403687.1| - 3.2 7.6 15.4 0.048 13.5 1.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Apt1 PF10351.9 gi|284165408|ref|YP_003403687.1| - 4.7 6.0 8.9 6.5 5.5 8.9 1.3 1 0 0 1 1 1 0 Golgi-body localisation protein domain SNARE_assoc PF09335.11 gi|284165410|ref|YP_003403689.1| - 1.7e-13 51.1 4.4 1.7e-13 51.1 4.4 2.1 2 0 0 2 2 2 1 SNARE associated Golgi protein Response_reg PF00072.24 gi|284165411|ref|YP_003403690.1| - 6.1e-18 65.0 0.1 1.1e-17 64.2 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|284165411|ref|YP_003403690.1| - 2.9e-12 46.7 2.0 8.1e-12 45.3 2.0 1.8 1 0 0 1 1 1 1 HalX domain DUF2043 PF09740.9 gi|284165412|ref|YP_003403691.1| - 0.058 14.1 0.5 0.061 14.0 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2043) zf-Mss51 PF13824.6 gi|284165412|ref|YP_003403691.1| - 0.063 13.4 4.1 0.086 13.0 4.1 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 MFS_1 PF07690.16 gi|284165413|ref|YP_003403692.1| - 2.3e-19 69.5 62.4 8.2e-15 54.6 39.8 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284165413|ref|YP_003403692.1| - 0.0018 17.2 0.1 0.0018 17.2 0.1 2.6 1 1 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.24 gi|284165413|ref|YP_003403692.1| - 0.0063 15.4 31.1 0.026 13.4 9.3 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Ribonuc_red_lgC PF02867.15 gi|284165414|ref|YP_003403693.1| - 1.3e-153 512.3 0.0 1.6e-153 512.0 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|284165414|ref|YP_003403693.1| - 1.8e-24 85.5 0.1 6.9e-24 83.7 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain DUF2461 PF09365.10 gi|284165414|ref|YP_003403693.1| - 0.0037 17.3 0.1 0.034 14.1 0.1 2.5 3 0 0 3 3 3 1 Conserved hypothetical protein (DUF2461) zf-RRN7 PF11781.8 gi|284165414|ref|YP_003403693.1| - 0.39 10.5 3.8 0.82 9.4 3.8 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PADR1 PF08063.12 gi|284165414|ref|YP_003403693.1| - 0.45 10.3 4.3 0.91 9.4 4.3 1.5 1 0 0 1 1 1 0 PADR1 (NUC008) domain TPPK_C PF12555.8 gi|284165415|ref|YP_003403694.1| - 8.3 6.6 17.5 1.3 9.1 9.9 2.1 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal GATase PF00117.28 gi|284165416|ref|YP_003403695.1| - 8.6e-46 156.1 0.0 9.9e-46 155.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284165416|ref|YP_003403695.1| - 1e-06 28.7 0.2 6.9e-06 26.0 0.2 2.0 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|284165417|ref|YP_003403696.1| - 1.1e-89 300.4 0.0 4.4e-89 298.5 0.0 1.8 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|284165417|ref|YP_003403696.1| - 3.1e-19 69.6 0.2 1.1e-16 61.4 0.1 3.4 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|284165418|ref|YP_003403697.1| - 1.5e-35 122.8 0.0 1.7e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.18 gi|284165418|ref|YP_003403697.1| - 0.028 13.5 0.0 0.084 11.9 0.0 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Glycos_transf_3 PF00591.21 gi|284165419|ref|YP_003403698.1| - 4e-97 324.8 3.4 5.9e-97 324.2 3.4 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|284165419|ref|YP_003403698.1| - 1.2e-16 60.2 3.8 1.2e-16 60.2 3.8 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|284165419|ref|YP_003403698.1| - 0.017 14.8 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) MarR_2 PF12802.7 gi|284165420|ref|YP_003403699.1| - 0.0016 18.3 0.2 0.0044 16.9 0.2 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|284165420|ref|YP_003403699.1| - 0.0053 16.5 0.1 0.012 15.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284165420|ref|YP_003403699.1| - 0.014 15.3 0.0 0.03 14.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|284165420|ref|YP_003403699.1| - 0.016 15.3 0.4 0.04 14.0 0.4 1.6 1 0 0 1 1 1 0 DprA winged helix domain DUF1724 PF08350.10 gi|284165420|ref|YP_003403699.1| - 0.024 14.8 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) Trp_repressor PF01371.19 gi|284165420|ref|YP_003403699.1| - 0.029 14.5 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_Crp_2 PF13545.6 gi|284165420|ref|YP_003403699.1| - 0.033 14.2 0.1 0.099 12.6 0.1 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284165420|ref|YP_003403699.1| - 0.15 12.0 0.1 0.56 10.2 0.1 2.0 1 1 1 2 2 2 0 MarR family DUF1059 PF06348.11 gi|284165421|ref|YP_003403700.1| - 0.045 14.0 1.9 0.06 13.6 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1059) MmoB_DmpM PF02406.17 gi|284165421|ref|YP_003403700.1| - 0.07 13.3 0.1 0.093 13.0 0.1 1.3 1 0 0 1 1 1 0 MmoB/DmpM family HalOD1 PF18545.1 gi|284165424|ref|YP_003403703.1| - 2.3e-20 72.6 0.2 3e-20 72.3 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|284165425|ref|YP_003403704.1| - 3.7e-16 58.6 0.1 5.6e-16 58.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284165425|ref|YP_003403704.1| - 1.6e-12 47.6 0.8 2.3e-12 47.1 0.8 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|284165425|ref|YP_003403704.1| - 7.2e-06 25.4 0.1 1.7e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284165425|ref|YP_003403704.1| - 0.00026 20.8 0.1 0.00053 19.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284165425|ref|YP_003403704.1| - 0.0017 17.9 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|284165425|ref|YP_003403704.1| - 0.0022 17.6 0.1 0.012 15.2 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|284165425|ref|YP_003403704.1| - 0.054 13.3 0.3 0.054 13.3 0.3 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|284165425|ref|YP_003403704.1| - 0.085 12.7 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Phage_CI_repr PF07022.13 gi|284165425|ref|YP_003403704.1| - 0.092 12.9 0.9 0.14 12.3 0.1 1.7 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain NIT PF08376.10 gi|284165426|ref|YP_003403705.1| - 0.029 14.9 1.5 0.08 13.4 0.7 1.9 1 1 1 2 2 2 0 Nitrate and nitrite sensing Mem_trans PF03547.18 gi|284165427|ref|YP_003403706.1| - 1.5e-20 72.9 19.3 5.7e-13 48.0 9.4 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF2781 PF10914.8 gi|284165427|ref|YP_003403706.1| - 9.8 6.6 10.0 3 8.2 3.2 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2781) Virul_fac_BrkB PF03631.15 gi|284165429|ref|YP_003403708.1| - 1.9e-47 162.0 25.4 2.2e-47 161.8 25.4 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF5510 PF17629.2 gi|284165429|ref|YP_003403708.1| - 1.6 8.8 5.6 2.1 8.4 0.8 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5510) SLATT_1 PF18181.1 gi|284165429|ref|YP_003403708.1| - 7.5 6.5 9.2 4.1 7.4 0.2 3.2 1 1 3 4 4 4 0 SMODS and SLOG-associating 2TM effector domain 1 CAP PF00188.26 gi|284165430|ref|YP_003403709.1| - 9.5e-11 42.6 0.1 1.5e-10 42.0 0.1 1.3 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CBS PF00571.28 gi|284165432|ref|YP_003403711.1| - 1.2e-36 124.9 10.5 2.7e-12 47.0 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|284165432|ref|YP_003403711.1| - 0.0003 21.5 0.1 0.00086 20.0 0.1 1.8 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF1508 PF07411.12 gi|284165432|ref|YP_003403711.1| - 0.021 14.7 0.1 0.068 13.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1508) GAF PF01590.26 gi|284165432|ref|YP_003403711.1| - 0.098 13.3 0.7 33 5.1 0.0 3.1 2 1 1 3 3 3 0 GAF domain Glyco_hydro_3_C PF01915.22 gi|284165433|ref|YP_003403712.1| - 2.8e-55 187.4 0.0 1.1e-54 185.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|284165433|ref|YP_003403712.1| - 8e-49 166.7 0.0 1e-46 159.8 0.0 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|284165433|ref|YP_003403712.1| - 6.1e-16 58.3 0.0 1.6e-15 57.0 0.0 1.8 1 0 0 1 1 1 1 Fibronectin type III-like domain Rad51 PF08423.11 gi|284165434|ref|YP_003403713.1| - 7.3e-26 91.0 0.0 9.8e-26 90.5 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|284165434|ref|YP_003403713.1| - 1.6e-13 50.7 0.5 2.5e-13 50.0 0.5 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|284165434|ref|YP_003403713.1| - 2.7e-12 46.7 0.0 3.8e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|284165434|ref|YP_003403713.1| - 4e-11 42.7 0.0 9.7e-11 41.5 0.0 1.6 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|284165434|ref|YP_003403713.1| - 3.7e-09 36.5 0.0 4.6e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|284165434|ref|YP_003403713.1| - 6.7e-07 29.2 0.0 3e-06 27.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|284165434|ref|YP_003403713.1| - 0.00051 19.5 0.0 0.00094 18.6 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|284165434|ref|YP_003403713.1| - 0.0011 19.4 0.2 0.0015 18.9 0.2 1.1 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|284165434|ref|YP_003403713.1| - 0.025 14.3 0.1 0.064 13.0 0.0 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|284165434|ref|YP_003403713.1| - 0.083 12.8 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Big_3_3 PF13750.6 gi|284165435|ref|YP_003403714.1| - 0.0069 16.0 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) Calici_MSP PF05752.11 gi|284165435|ref|YP_003403714.1| - 0.092 12.6 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 Calicivirus minor structural protein Peroxin-3 PF04882.12 gi|284165435|ref|YP_003403714.1| - 0.32 9.9 1.6 0.46 9.4 1.6 1.1 1 0 0 1 1 1 0 Peroxin-3 Slp PF03843.13 gi|284165439|ref|YP_003403718.1| - 0.035 13.5 0.1 2 7.8 0.1 2.4 1 1 1 2 2 2 0 Outer membrane lipoprotein Slp family GYD PF08734.11 gi|284165439|ref|YP_003403718.1| - 0.12 12.3 10.1 0.17 11.8 0.6 2.8 1 1 2 3 3 3 0 GYD domain CCDC84 PF14968.6 gi|284165439|ref|YP_003403718.1| - 3.9 7.0 7.3 3.9 7.0 7.0 1.3 1 1 0 1 1 1 0 Coiled coil protein 84 SIS PF01380.22 gi|284165440|ref|YP_003403719.1| - 1.6e-49 167.1 0.1 9.2e-24 83.8 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|284165440|ref|YP_003403719.1| - 2.9e-21 76.1 0.3 6.8e-21 74.9 0.3 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|284165440|ref|YP_003403719.1| - 3.4e-19 69.0 0.0 5.6e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|284165440|ref|YP_003403719.1| - 0.052 12.4 0.0 0.085 11.7 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II GATase_2 PF00310.21 gi|284165440|ref|YP_003403719.1| - 0.068 11.9 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NTP_transferase PF00483.23 gi|284165441|ref|YP_003403720.1| - 1.2e-31 110.2 0.0 1.6e-31 109.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|284165441|ref|YP_003403720.1| - 3.8e-16 59.9 0.3 5.5e-16 59.3 0.3 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|284165441|ref|YP_003403720.1| - 3.9e-13 48.5 14.4 0.00019 21.0 1.3 4.6 2 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284165441|ref|YP_003403720.1| - 3.3e-05 23.5 12.0 0.23 11.3 1.3 4.5 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|284165441|ref|YP_003403720.1| - 0.008 15.2 0.1 0.013 14.5 0.1 1.4 1 0 0 1 1 1 1 L-fucokinase IspD PF01128.19 gi|284165441|ref|YP_003403720.1| - 0.023 14.4 0.1 0.041 13.6 0.1 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Urocanase_C PF17392.2 gi|284165441|ref|YP_003403720.1| - 0.031 13.7 3.9 0.14 11.6 1.0 2.2 2 0 0 2 2 2 0 Urocanase C-terminal domain DUF4954 PF16314.5 gi|284165441|ref|YP_003403720.1| - 0.22 9.6 1.9 0.31 9.1 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) DUF5060 PF16586.5 gi|284165442|ref|YP_003403721.1| - 0.094 13.1 0.1 5.3 7.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5060) UDPG_MGDP_dh_N PF03721.14 gi|284165443|ref|YP_003403722.1| - 2.9e-32 111.7 0.0 4.6e-32 111.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|284165443|ref|YP_003403722.1| - 1.4e-19 70.1 0.0 2.1e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|284165443|ref|YP_003403722.1| - 3.5e-14 53.1 0.0 5.9e-13 49.1 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|284165443|ref|YP_003403722.1| - 1.9e-10 41.1 0.0 4.2e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|284165443|ref|YP_003403722.1| - 3.3e-05 23.9 0.0 8.6e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284165443|ref|YP_003403722.1| - 0.00015 22.3 0.0 0.0004 20.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|284165443|ref|YP_003403722.1| - 0.00028 20.6 0.0 0.00048 19.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|284165443|ref|YP_003403722.1| - 0.00068 19.0 0.0 0.0025 17.2 0.0 1.9 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|284165443|ref|YP_003403722.1| - 0.001 19.1 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|284165443|ref|YP_003403722.1| - 0.0073 16.2 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Rossmann-like domain TrkA_N PF02254.18 gi|284165443|ref|YP_003403722.1| - 0.048 13.9 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|284165444|ref|YP_003403723.1| - 4.9e-59 200.4 0.0 1.3e-58 198.9 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|284165444|ref|YP_003403723.1| - 2e-58 197.7 0.0 2.4e-58 197.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284165444|ref|YP_003403723.1| - 5.1e-25 88.0 0.0 6.8e-25 87.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284165444|ref|YP_003403723.1| - 3e-18 66.0 0.0 2e-17 63.3 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|284165444|ref|YP_003403723.1| - 6e-16 58.4 0.0 7.8e-16 58.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284165444|ref|YP_003403723.1| - 2.1e-13 50.6 0.1 4.6e-13 49.5 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284165444|ref|YP_003403723.1| - 4e-12 45.8 0.8 1.5e-10 40.7 0.1 2.7 1 1 1 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|284165444|ref|YP_003403723.1| - 2.1e-06 27.5 0.1 5.7e-06 26.0 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|284165444|ref|YP_003403723.1| - 0.00012 22.0 0.1 0.00032 20.7 0.1 1.7 1 1 0 1 1 1 1 KR domain Ldh_1_N PF00056.23 gi|284165444|ref|YP_003403723.1| - 0.0042 17.2 0.3 0.007 16.5 0.3 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|284165444|ref|YP_003403723.1| - 0.021 15.1 0.3 0.13 12.5 0.3 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Glyco_tranf_2_3 PF13641.6 gi|284165445|ref|YP_003403724.1| - 6.3e-19 68.8 0.4 9.2e-19 68.2 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|284165445|ref|YP_003403724.1| - 1.8e-18 66.9 0.2 4.2e-18 65.7 0.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|284165445|ref|YP_003403724.1| - 3.2e-06 27.6 0.1 6e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|284165445|ref|YP_003403724.1| - 0.00026 20.9 0.8 0.0025 17.8 0.1 2.4 3 0 0 3 3 3 1 Glycosyl transferase family group 2 NTP_transf_3 PF12804.7 gi|284165445|ref|YP_003403724.1| - 0.024 15.0 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain Polysacc_deac_1 PF01522.21 gi|284165446|ref|YP_003403725.1| - 7.6e-11 42.0 0.0 1.3e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_10 PF00331.20 gi|284165447|ref|YP_003403726.1| - 2.2e-36 125.6 0.3 3.5e-36 125.0 0.3 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 CarboxypepD_reg PF13620.6 gi|284165447|ref|YP_003403726.1| - 0.0089 16.3 1.6 3.5 8.0 0.1 2.3 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|284165447|ref|YP_003403726.1| - 0.3 11.1 1.9 1.3 9.1 0.1 2.7 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) PIG-L PF02585.17 gi|284165448|ref|YP_003403727.1| - 2.5e-20 73.4 1.7 3.4e-20 73.0 1.7 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Vg_Tdu PF07545.14 gi|284165448|ref|YP_003403727.1| - 0.63 9.9 2.0 22 4.9 0.1 2.4 2 0 0 2 2 2 0 Vestigial/Tondu family WbqC PF08889.11 gi|284165449|ref|YP_003403728.1| - 1.5e-28 100.2 0.0 3.2e-19 69.7 0.1 2.2 2 0 0 2 2 2 2 WbqC-like protein family Seryl_tRNA_N PF02403.22 gi|284165449|ref|YP_003403728.1| - 2e-08 34.4 1.8 4.5e-08 33.3 2.0 1.4 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain SKA2 PF16740.5 gi|284165449|ref|YP_003403728.1| - 0.011 15.5 0.6 0.02 14.7 0.6 1.3 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 FUSC PF04632.12 gi|284165449|ref|YP_003403728.1| - 0.35 9.3 3.8 0.44 9.0 3.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family GPS2_interact PF15784.5 gi|284165449|ref|YP_003403728.1| - 0.35 11.3 3.0 2.3 8.7 0.4 2.2 1 1 1 2 2 2 0 G-protein pathway suppressor 2-interacting domain Glyco_hydro_18 PF00704.28 gi|284165450|ref|YP_003403729.1| - 1e-93 314.5 7.5 1.9e-93 313.6 7.5 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|284165450|ref|YP_003403729.1| - 2.5e-06 27.2 4.2 2.5e-06 27.2 4.2 3.5 4 0 0 4 4 4 1 PKD domain CBM_5_12 PF02839.14 gi|284165450|ref|YP_003403729.1| - 0.00034 21.0 6.0 0.00034 21.0 6.0 2.9 2 0 0 2 2 2 1 Carbohydrate binding domain DUF111 PF01969.17 gi|284165452|ref|YP_003403731.1| - 1.3e-132 442.5 0.4 1.5e-132 442.2 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.20 gi|284165452|ref|YP_003403731.1| - 0.046 13.1 0.3 0.1 12.0 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator SelP_N PF04592.14 gi|284165452|ref|YP_003403731.1| - 0.65 9.4 5.9 4.7 6.5 6.0 1.9 2 0 0 2 2 2 0 Selenoprotein P, N terminal region AAA PF00004.29 gi|284165453|ref|YP_003403732.1| - 7.3e-101 333.8 0.0 2.1e-49 167.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|284165453|ref|YP_003403732.1| - 1e-30 105.7 0.0 6.7e-30 103.1 0.1 2.4 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|284165453|ref|YP_003403732.1| - 1.6e-29 101.4 4.5 1.7e-14 53.3 1.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|284165453|ref|YP_003403732.1| - 1.3e-15 56.9 0.2 8e-15 54.4 0.2 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|284165453|ref|YP_003403732.1| - 3e-15 56.3 0.0 8e-07 28.9 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|284165453|ref|YP_003403732.1| - 1.7e-14 54.5 0.2 1.3e-05 25.7 0.2 4.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|284165453|ref|YP_003403732.1| - 1.8e-13 50.7 2.2 1.7e-05 24.8 0.0 3.9 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|284165453|ref|YP_003403732.1| - 6e-13 49.3 0.0 1.8e-05 24.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|284165453|ref|YP_003403732.1| - 3.6e-11 43.5 0.5 0.0011 19.2 0.1 4.2 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|284165453|ref|YP_003403732.1| - 6.7e-11 42.5 0.0 6.4e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|284165453|ref|YP_003403732.1| - 9.7e-11 41.5 0.1 0.00041 19.7 0.0 3.3 4 0 0 4 4 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|284165453|ref|YP_003403732.1| - 3.5e-08 33.4 0.1 0.017 14.9 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|284165453|ref|YP_003403732.1| - 1.4e-07 31.6 0.0 0.005 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|284165453|ref|YP_003403732.1| - 4.8e-07 29.5 1.2 2.1 7.9 0.0 4.5 4 0 0 4 4 4 1 AAA domain AAA_18 PF13238.6 gi|284165453|ref|YP_003403732.1| - 4.8e-07 30.4 0.0 0.068 13.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|284165453|ref|YP_003403732.1| - 6.2e-07 29.8 0.0 0.057 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|284165453|ref|YP_003403732.1| - 1.2e-06 28.1 0.1 0.055 12.8 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|284165453|ref|YP_003403732.1| - 4.9e-06 26.2 0.0 0.12 11.9 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|284165453|ref|YP_003403732.1| - 6.5e-06 26.0 0.1 0.16 11.7 0.0 3.1 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|284165453|ref|YP_003403732.1| - 8.8e-06 25.6 0.0 0.11 12.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|284165453|ref|YP_003403732.1| - 9.3e-06 26.0 0.0 0.038 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|284165453|ref|YP_003403732.1| - 1.9e-05 24.2 1.0 0.5 9.7 0.0 3.6 4 0 0 4 4 3 2 KaiC TsaE PF02367.17 gi|284165453|ref|YP_003403732.1| - 2.6e-05 24.2 0.0 0.18 11.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vps4_C PF09336.10 gi|284165453|ref|YP_003403732.1| - 2.9e-05 24.0 0.8 0.0083 16.1 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|284165453|ref|YP_003403732.1| - 3.1e-05 23.8 0.0 0.13 11.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|284165453|ref|YP_003403732.1| - 3.1e-05 23.3 0.0 0.24 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|284165453|ref|YP_003403732.1| - 6.8e-05 22.7 0.1 0.51 10.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|284165453|ref|YP_003403732.1| - 6.8e-05 22.4 0.6 0.44 10.0 0.0 3.0 3 0 0 3 3 3 2 PhoH-like protein AAA_11 PF13086.6 gi|284165453|ref|YP_003403732.1| - 7e-05 22.7 0.0 0.31 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|284165453|ref|YP_003403732.1| - 7.8e-05 23.2 0.0 0.46 11.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter ATPase_2 PF01637.18 gi|284165453|ref|YP_003403732.1| - 9e-05 22.5 0.0 0.88 9.4 0.0 3.8 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|284165453|ref|YP_003403732.1| - 0.00011 21.5 0.0 0.12 11.5 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.9 gi|284165453|ref|YP_003403732.1| - 0.00029 20.2 0.0 0.34 10.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|284165453|ref|YP_003403732.1| - 0.00041 20.3 0.3 0.57 10.1 0.0 3.2 4 0 0 4 4 2 1 NACHT domain AAA_17 PF13207.6 gi|284165453|ref|YP_003403732.1| - 0.00044 20.7 0.0 0.98 9.8 0.0 3.4 3 0 0 3 3 2 1 AAA domain Parvo_NS1 PF01057.17 gi|284165453|ref|YP_003403732.1| - 0.00044 19.4 0.2 0.51 9.4 0.1 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|284165453|ref|YP_003403732.1| - 0.00049 19.4 0.2 0.86 8.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|284165453|ref|YP_003403732.1| - 0.0016 18.5 0.0 2.9 8.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|284165453|ref|YP_003403732.1| - 0.0016 17.8 0.9 0.54 9.6 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase NTPase_1 PF03266.15 gi|284165453|ref|YP_003403732.1| - 0.0019 18.2 0.2 3 7.7 0.1 3.3 2 1 0 2 2 2 1 NTPase AAA_19 PF13245.6 gi|284165453|ref|YP_003403732.1| - 0.0026 18.1 0.7 4.2 7.7 0.0 2.9 2 1 0 3 3 2 0 AAA domain Bac_DnaA PF00308.18 gi|284165453|ref|YP_003403732.1| - 0.0044 16.9 0.1 3.7 7.3 0.0 2.9 3 0 0 3 3 2 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|284165453|ref|YP_003403732.1| - 0.0074 16.0 0.1 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|284165453|ref|YP_003403732.1| - 0.015 15.1 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|284165453|ref|YP_003403732.1| - 0.018 14.3 0.1 4.6 6.4 0.0 2.9 2 2 0 3 3 3 0 KAP family P-loop domain ResIII PF04851.15 gi|284165453|ref|YP_003403732.1| - 0.021 14.8 0.0 8.9 6.3 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Torsin PF06309.11 gi|284165453|ref|YP_003403732.1| - 0.021 14.9 0.0 4.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin SKI PF01202.22 gi|284165453|ref|YP_003403732.1| - 0.033 14.3 0.0 7.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Hydin_ADK PF17213.3 gi|284165453|ref|YP_003403732.1| - 0.035 14.4 0.0 4.1 7.6 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|284165453|ref|YP_003403732.1| - 0.039 13.6 0.0 4.3 6.9 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) CPT PF07931.12 gi|284165453|ref|YP_003403732.1| - 0.047 13.5 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|284165453|ref|YP_003403732.1| - 0.052 13.5 0.0 10 6.0 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain AFG1_ATPase PF03969.16 gi|284165453|ref|YP_003403732.1| - 0.071 12.0 0.0 1.9 7.3 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Cytidylate_kin2 PF13189.6 gi|284165453|ref|YP_003403732.1| - 0.086 13.0 0.0 8.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family DUF2480 PF10652.9 gi|284165453|ref|YP_003403732.1| - 0.17 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2480) Guanylate_kin PF00625.21 gi|284165453|ref|YP_003403732.1| - 0.21 11.2 0.4 68 3.1 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase Arch_fla_DE PF04659.13 gi|284165453|ref|YP_003403732.1| - 0.25 11.2 0.2 1.3 9.0 0.0 2.3 3 0 0 3 3 1 0 Archaeal flagella protein EamA PF00892.20 gi|284165454|ref|YP_003403733.1| - 3.5e-36 124.4 28.4 2.8e-19 69.7 9.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF2892 PF11127.8 gi|284165454|ref|YP_003403733.1| - 0.081 13.0 0.7 0.081 13.0 0.7 5.3 4 1 1 6 6 6 0 Protein of unknown function (DUF2892) RVT_3 PF13456.6 gi|284165456|ref|YP_003403735.1| - 0.00013 21.8 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|284165456|ref|YP_003403735.1| - 0.0045 17.2 0.0 0.0055 16.9 0.0 1.1 1 0 0 1 1 1 1 RNase H DUF2240 PF09999.9 gi|284165457|ref|YP_003403736.1| - 5e-52 175.4 0.5 5.8e-52 175.2 0.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) ABATE PF07336.11 gi|284165457|ref|YP_003403736.1| - 0.14 12.9 5.3 0.18 12.5 5.3 1.3 1 0 0 1 1 1 0 Putative stress-induced transcription regulator SoxE PF06525.11 gi|284165459|ref|YP_003403738.1| - 0.03 13.8 0.2 0.092 12.2 0.0 1.8 2 0 0 2 2 2 0 Sulfocyanin (SoxE) domain Lipid_bd PF12888.7 gi|284165459|ref|YP_003403738.1| - 0.031 14.7 0.1 24 5.4 0.0 3.8 3 0 0 3 3 3 0 Lipid-binding putative hydrolase TAT_signal PF10518.9 gi|284165459|ref|YP_003403738.1| - 1.2 9.1 10.8 4.8 7.2 10.8 2.1 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Metalloenzyme PF01676.18 gi|284165460|ref|YP_003403739.1| - 0.033 13.5 0.1 0.051 12.9 0.1 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily PglZ PF08665.12 gi|284165460|ref|YP_003403739.1| - 0.14 12.3 0.1 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 PglZ domain Sulfatase PF00884.23 gi|284165461|ref|YP_003403740.1| - 1.5e-24 87.0 0.0 2.4e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|284165461|ref|YP_003403740.1| - 2.9e-10 40.3 3.9 2.9e-09 37.0 0.4 2.9 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|284165461|ref|YP_003403740.1| - 0.00085 18.8 0.0 0.0052 16.2 0.0 1.9 1 1 1 2 2 2 1 Metalloenzyme superfamily Polysacc_synt PF01943.17 gi|284165462|ref|YP_003403741.1| - 3.8e-30 105.2 21.2 3.8e-30 105.2 21.2 2.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|284165462|ref|YP_003403741.1| - 9.9e-26 90.6 14.0 1.7e-25 89.8 14.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|284165462|ref|YP_003403741.1| - 6e-16 58.8 48.5 9.6e-12 45.2 15.4 3.8 3 2 1 4 4 4 3 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|284165462|ref|YP_003403741.1| - 6.5e-08 32.4 23.4 1.2e-05 25.0 6.6 3.3 2 2 1 3 3 3 2 MatE Rft-1 PF04506.13 gi|284165462|ref|YP_003403741.1| - 2.8e-06 26.4 4.0 4.2e-06 25.8 3.6 1.6 1 1 0 1 1 1 1 Rft protein HAD_2 PF13419.6 gi|284165463|ref|YP_003403742.1| - 9.3e-26 91.0 0.0 1.1e-25 90.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284165463|ref|YP_003403742.1| - 1.2e-15 58.4 2.5 3.6e-15 56.8 2.5 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284165463|ref|YP_003403742.1| - 4.9e-11 42.5 0.2 1.1e-10 41.4 0.2 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|284165463|ref|YP_003403742.1| - 7.2e-09 36.3 1.4 9.9e-09 35.9 1.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|284165463|ref|YP_003403742.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Acid Phosphatase Hydrolase_6 PF13344.6 gi|284165463|ref|YP_003403742.1| - 0.17 12.0 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Na_H_Exchanger PF00999.21 gi|284165464|ref|YP_003403743.1| - 2e-50 171.7 39.4 2.5e-50 171.4 39.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|284165465|ref|YP_003403744.1| - 3.6e-18 65.2 0.3 2.8e-17 62.3 0.0 2.2 2 1 0 2 2 2 1 TrkA-C domain Castor_Poll_mid PF06241.12 gi|284165465|ref|YP_003403744.1| - 0.0032 17.4 0.0 0.044 13.8 0.0 2.1 1 1 1 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel MGS PF02142.22 gi|284165466|ref|YP_003403745.1| - 1.4e-15 57.2 0.0 1.7e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain adh_short PF00106.25 gi|284165467|ref|YP_003403746.1| - 1.1e-36 126.1 0.0 1.2e-36 126.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284165467|ref|YP_003403746.1| - 1.9e-31 109.5 0.0 2.3e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284165467|ref|YP_003403746.1| - 9.7e-06 25.6 0.0 1.4e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 KR domain HMA PF00403.26 gi|284165468|ref|YP_003403747.1| - 7.7e-08 32.7 0.7 2.7e-07 30.9 0.7 1.7 1 1 0 1 1 1 1 Heavy-metal-associated domain E1-E2_ATPase PF00122.20 gi|284165469|ref|YP_003403748.1| - 3.4e-49 166.8 0.0 7.6e-49 165.7 0.0 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|284165469|ref|YP_003403748.1| - 2.6e-38 132.4 7.1 5.1e-38 131.5 7.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|284165469|ref|YP_003403748.1| - 3e-10 40.4 0.1 9.4e-10 38.8 0.0 2.0 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|284165469|ref|YP_003403748.1| - 1e-06 28.7 0.4 0.00014 21.7 0.2 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284165469|ref|YP_003403748.1| - 0.00058 20.3 0.5 0.0029 18.0 0.5 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Methyltransf_25 PF13649.6 gi|284165470|ref|YP_003403749.1| - 2.6e-21 76.1 0.4 6.4e-21 74.9 0.2 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284165470|ref|YP_003403749.1| - 6.8e-20 71.5 0.1 1.1e-19 70.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284165470|ref|YP_003403749.1| - 2.4e-18 66.4 0.0 3.1e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284165470|ref|YP_003403749.1| - 1.4e-17 63.8 0.0 2.1e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284165470|ref|YP_003403749.1| - 6e-11 42.4 0.0 7.8e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284165470|ref|YP_003403749.1| - 7.7e-09 36.2 0.1 1.3e-08 35.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|284165470|ref|YP_003403749.1| - 6.1e-07 29.3 0.1 2.8e-05 23.9 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 CMAS PF02353.20 gi|284165470|ref|YP_003403749.1| - 8.7e-07 28.5 0.0 1.2e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|284165470|ref|YP_003403749.1| - 3.3e-06 26.7 0.2 4.2e-06 26.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|284165470|ref|YP_003403749.1| - 7e-06 25.7 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|284165470|ref|YP_003403749.1| - 8.3e-06 25.7 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.14 gi|284165470|ref|YP_003403749.1| - 0.0034 16.8 0.0 0.0045 16.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|284165470|ref|YP_003403749.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_15 PF09445.10 gi|284165470|ref|YP_003403749.1| - 0.025 14.1 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|284165470|ref|YP_003403749.1| - 0.039 13.5 0.0 0.057 13.0 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW OpuAC PF04069.12 gi|284165470|ref|YP_003403749.1| - 0.15 11.6 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system Methyltransf_32 PF13679.6 gi|284165470|ref|YP_003403749.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|284165470|ref|YP_003403749.1| - 0.16 11.9 0.0 0.22 11.5 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain DehI PF10778.9 gi|284165471|ref|YP_003403750.1| - 1.4e-33 116.1 0.0 3.5e-23 82.4 0.1 2.4 2 1 0 2 2 2 2 Halocarboxylic acid dehydrogenase DehI Hydrolase PF00702.26 gi|284165472|ref|YP_003403751.1| - 4.4e-15 56.5 0.1 1e-14 55.4 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284165472|ref|YP_003403751.1| - 4.4e-14 53.0 0.0 5.2e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284165472|ref|YP_003403751.1| - 1.2e-05 25.8 0.0 1.5e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284165472|ref|YP_003403751.1| - 0.0004 20.4 0.0 0.0011 19.0 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like Put_Phosphatase PF06888.12 gi|284165472|ref|YP_003403751.1| - 0.0087 15.5 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Putative Phosphatase DUF3215 PF11503.8 gi|284165472|ref|YP_003403751.1| - 0.041 13.7 0.0 0.095 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3215) DUF5066 PF16728.5 gi|284165472|ref|YP_003403751.1| - 0.044 13.1 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5066) MarR_2 PF12802.7 gi|284165473|ref|YP_003403752.1| - 1.1e-06 28.4 0.1 1.5e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284165473|ref|YP_003403752.1| - 3e-06 27.1 0.0 4e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284165473|ref|YP_003403752.1| - 1.8e-05 24.2 0.0 2.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284165473|ref|YP_003403752.1| - 4.2e-05 23.5 0.2 6e-05 23.0 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284165473|ref|YP_003403752.1| - 5.1e-05 23.7 0.0 6.2e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|284165473|ref|YP_003403752.1| - 0.00017 21.4 0.0 0.00019 21.2 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|284165473|ref|YP_003403752.1| - 0.00039 20.2 0.9 0.00056 19.7 0.9 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284165473|ref|YP_003403752.1| - 0.001 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|284165473|ref|YP_003403752.1| - 0.0019 17.8 0.3 0.0026 17.4 0.3 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|284165473|ref|YP_003403752.1| - 0.008 16.5 0.2 0.011 16.0 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|284165473|ref|YP_003403752.1| - 0.0085 15.9 0.1 0.011 15.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|284165473|ref|YP_003403752.1| - 0.011 15.7 0.1 0.017 15.0 0.1 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|284165473|ref|YP_003403752.1| - 0.014 15.3 0.1 0.019 14.9 0.1 1.2 1 0 0 1 1 1 0 HTH domain HTH_9 PF08221.11 gi|284165473|ref|YP_003403752.1| - 0.025 14.6 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_micro PF17007.5 gi|284165473|ref|YP_003403752.1| - 0.041 12.7 0.0 0.047 12.5 0.0 1.0 1 0 0 1 1 1 0 HTH-like Replic_Relax PF13814.6 gi|284165473|ref|YP_003403752.1| - 0.078 13.0 0.2 0.092 12.8 0.2 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_43 PF09904.9 gi|284165473|ref|YP_003403752.1| - 0.079 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix RepL PF05732.11 gi|284165473|ref|YP_003403752.1| - 0.083 12.3 0.0 0.095 12.1 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|284165473|ref|YP_003403752.1| - 0.11 12.3 0.2 0.23 11.3 0.2 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|284165473|ref|YP_003403752.1| - 0.18 11.8 0.0 0.88 9.6 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Abhydrolase_1 PF00561.20 gi|284165474|ref|YP_003403753.1| - 5.5e-28 98.3 0.2 3e-22 79.5 0.2 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284165474|ref|YP_003403753.1| - 7e-21 75.8 3.1 8.6e-21 75.6 3.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284165474|ref|YP_003403753.1| - 3.4e-12 46.1 0.0 1.2e-09 37.8 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Ndr PF03096.14 gi|284165474|ref|YP_003403753.1| - 0.00011 21.0 0.0 0.00024 19.9 0.0 1.5 1 1 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 gi|284165474|ref|YP_003403753.1| - 0.012 15.7 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein PGAP1 PF07819.13 gi|284165474|ref|YP_003403753.1| - 0.071 12.8 0.0 6.9 6.3 0.0 2.2 1 1 1 2 2 2 0 PGAP1-like protein Glyoxalase PF00903.25 gi|284165475|ref|YP_003403754.1| - 4e-15 56.1 0.0 4.7e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284165475|ref|YP_003403754.1| - 6.7e-13 48.9 0.0 7.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|284165475|ref|YP_003403754.1| - 2.7e-06 27.6 0.1 3.8e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|284165475|ref|YP_003403754.1| - 3e-06 27.2 0.0 0.00012 22.0 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|284165475|ref|YP_003403754.1| - 0.0008 20.2 0.1 0.0013 19.5 0.1 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain zf-ribbon_3 PF13248.6 gi|284165476|ref|YP_003403755.1| - 0.0042 16.4 1.0 0.0071 15.7 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|284165476|ref|YP_003403755.1| - 0.11 12.1 2.7 0.88 9.2 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|284165476|ref|YP_003403755.1| - 1.1 9.4 3.8 3 8.0 3.8 1.7 1 1 0 1 1 1 0 Zinc ribbon domain OMPdecase PF00215.24 gi|284165477|ref|YP_003403756.1| - 6e-33 114.3 0.0 6.7e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family zf-B_box PF00643.24 gi|284165479|ref|YP_003403758.1| - 0.00071 19.7 5.2 0.003 17.7 1.3 2.1 2 0 0 2 2 2 1 B-box zinc finger zf-HIT PF04438.16 gi|284165479|ref|YP_003403758.1| - 0.012 15.5 5.4 0.017 15.0 1.9 2.1 2 0 0 2 2 2 0 HIT zinc finger DZR PF12773.7 gi|284165479|ref|YP_003403758.1| - 0.094 12.8 10.0 1.7 8.7 10.0 2.1 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_2 PF14445.6 gi|284165479|ref|YP_003403758.1| - 0.26 11.5 5.7 0.38 10.9 5.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 zf-C3HC4_3 PF13920.6 gi|284165479|ref|YP_003403758.1| - 0.28 11.1 8.0 0.62 10.0 8.0 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.19 gi|284165479|ref|YP_003403758.1| - 1.1 9.3 6.0 1.3 9.0 6.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|284165479|ref|YP_003403758.1| - 7.4 6.3 10.8 1.1 9.0 5.6 2.0 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 GTP_EFTU PF00009.27 gi|284165480|ref|YP_003403759.1| - 2.1e-35 122.1 0.0 3.1e-35 121.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|284165480|ref|YP_003403759.1| - 2.5e-11 43.8 2.7 2.6e-11 43.7 0.3 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|284165480|ref|YP_003403759.1| - 7.4e-07 29.5 0.0 4.8e-06 26.9 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|284165480|ref|YP_003403759.1| - 0.027 14.4 0.1 0.59 10.0 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|284165480|ref|YP_003403759.1| - 0.041 14.0 0.0 0.19 11.8 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Polysacc_deac_1 PF01522.21 gi|284165480|ref|YP_003403759.1| - 0.055 13.4 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase ATP_bind_1 PF03029.17 gi|284165480|ref|YP_003403759.1| - 0.069 12.9 0.2 0.78 9.5 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein P5CR_dimer PF14748.6 gi|284165481|ref|YP_003403760.1| - 3e-35 120.6 2.5 5.4e-35 119.8 2.5 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|284165481|ref|YP_003403760.1| - 1.9e-17 63.6 0.5 8e-17 61.6 0.0 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284165481|ref|YP_003403760.1| - 1.1e-05 25.7 0.0 2.7e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.17 gi|284165481|ref|YP_003403760.1| - 0.00058 18.9 0.1 0.065 12.2 0.1 2.1 2 0 0 2 2 2 2 Prephenate dehydrogenase DUF166 PF02593.14 gi|284165481|ref|YP_003403760.1| - 0.00073 19.2 0.1 0.053 13.1 0.1 2.1 1 1 0 2 2 2 1 Domain of unknown function 3HCDH_N PF02737.18 gi|284165481|ref|YP_003403760.1| - 0.00078 19.4 0.0 0.0026 17.7 0.0 2.0 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|284165481|ref|YP_003403760.1| - 0.0011 19.6 0.8 0.094 13.4 0.0 2.8 3 0 0 3 3 3 1 CoA binding domain TrkA_N PF02254.18 gi|284165481|ref|YP_003403760.1| - 0.0014 18.9 0.1 0.0066 16.7 0.1 2.2 1 1 0 1 1 1 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|284165481|ref|YP_003403760.1| - 0.0075 16.5 0.1 0.021 15.1 0.1 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|284165481|ref|YP_003403760.1| - 0.014 15.0 1.9 0.22 11.1 1.9 2.2 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|284165481|ref|YP_003403760.1| - 0.03 13.9 0.1 0.049 13.2 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Methyltransf_25 PF13649.6 gi|284165481|ref|YP_003403760.1| - 0.031 15.0 0.1 0.26 12.0 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain GFO_IDH_MocA PF01408.22 gi|284165481|ref|YP_003403760.1| - 0.037 14.8 1.0 0.28 12.0 0.0 2.5 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.28 gi|284165482|ref|YP_003403761.1| - 2.8e-42 145.0 0.7 3.5e-42 144.7 0.7 1.1 1 0 0 1 1 1 1 Amino acid kinase family CW_7 PF08230.11 gi|284165482|ref|YP_003403761.1| - 0.089 12.5 0.0 0.25 11.1 0.0 1.8 1 0 0 1 1 1 0 CW_7 repeat Snf7 PF03357.21 gi|284165482|ref|YP_003403761.1| - 0.1 12.2 0.1 0.53 9.9 0.0 2.0 2 0 0 2 2 2 0 Snf7 Aldedh PF00171.22 gi|284165483|ref|YP_003403762.1| - 1.9e-26 92.6 3.2 1.1e-22 80.3 0.9 2.3 1 1 1 2 2 2 2 Aldehyde dehydrogenase family AFOR_C PF01314.18 gi|284165483|ref|YP_003403762.1| - 0.066 12.2 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Pup PF05639.11 gi|284165483|ref|YP_003403762.1| - 1.7 9.6 7.5 2 9.4 0.0 3.0 2 0 0 2 2 2 0 Pup-like protein MCH PF02289.16 gi|284165484|ref|YP_003403763.1| - 1.9e-114 382.1 0.0 2.2e-114 382.0 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) Thiamine_BP PF01910.17 gi|284165485|ref|YP_003403764.1| - 7.7e-24 83.4 0.7 8.8e-24 83.2 0.7 1.0 1 0 0 1 1 1 1 Thiamine-binding protein HNH_repeat PF18780.1 gi|284165485|ref|YP_003403764.1| - 0.07 12.9 0.2 0.15 11.9 0.2 1.6 1 0 0 1 1 1 0 Homing endonuclease repeat HalOD1 PF18545.1 gi|284165486|ref|YP_003403765.1| - 1.6e-22 79.5 0.3 2.1e-22 79.2 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2911 PF11138.8 gi|284165486|ref|YP_003403765.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2911) RNA_POL_M_15KD PF02150.16 gi|284165487|ref|YP_003403766.1| - 0.00027 20.7 0.5 0.14 12.0 0.0 2.1 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit Stc1 PF12898.7 gi|284165487|ref|YP_003403766.1| - 0.0014 19.1 0.1 0.0022 18.5 0.1 1.3 1 1 0 1 1 1 1 Stc1 domain zinc_ribbon_4 PF13717.6 gi|284165487|ref|YP_003403766.1| - 0.0015 18.4 0.4 0.0031 17.4 0.4 1.5 1 1 1 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|284165487|ref|YP_003403766.1| - 0.004 17.1 1.7 0.12 12.3 0.2 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain HypA PF01155.19 gi|284165487|ref|YP_003403766.1| - 0.0043 17.1 0.1 0.0043 17.1 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|284165487|ref|YP_003403766.1| - 0.013 15.5 2.2 2.1 8.4 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PriA_CRR PF18319.1 gi|284165487|ref|YP_003403766.1| - 0.033 14.2 3.2 0.047 13.7 0.2 2.4 3 0 0 3 3 3 0 PriA DNA helicase Cys-rich region (CRR) domain TFIIS_C PF01096.18 gi|284165487|ref|YP_003403766.1| - 0.057 13.3 2.7 0.94 9.4 0.5 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) ADK_lid PF05191.14 gi|284165487|ref|YP_003403766.1| - 0.063 13.3 0.6 0.13 12.3 0.6 1.6 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn_Tnp_IS91 PF14319.6 gi|284165487|ref|YP_003403766.1| - 0.069 13.2 0.7 0.26 11.3 0.7 1.8 1 1 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|284165487|ref|YP_003403766.1| - 0.087 12.8 0.7 0.14 12.1 0.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|284165487|ref|YP_003403766.1| - 0.1 12.3 3.3 0.66 9.8 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Elf1 PF05129.13 gi|284165487|ref|YP_003403766.1| - 0.11 12.6 0.3 3.3 7.8 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|284165487|ref|YP_003403766.1| - 0.14 12.0 1.2 0.61 9.9 1.1 1.9 1 1 1 2 2 2 0 zinc-ribbon domain DUF983 PF06170.12 gi|284165487|ref|YP_003403766.1| - 0.24 11.8 0.4 6.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Nudix_N_2 PF14803.6 gi|284165487|ref|YP_003403766.1| - 0.3 11.0 3.8 1.1 9.2 3.7 1.9 1 1 1 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|284165487|ref|YP_003403766.1| - 0.42 10.8 4.1 3.3 7.9 4.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|284165487|ref|YP_003403766.1| - 0.9 9.3 5.0 12 5.6 5.0 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF4112 PF13430.6 gi|284165488|ref|YP_003403767.1| - 1.6e-32 111.9 0.1 1.9e-32 111.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) Dak2 PF02734.17 gi|284165488|ref|YP_003403767.1| - 0.12 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 DAK2 domain PAS PF00989.25 gi|284165489|ref|YP_003403768.1| - 3.9e-39 133.1 3.9 3.9e-13 49.4 0.0 5.7 5 1 1 6 6 6 3 PAS fold PAS_9 PF13426.7 gi|284165489|ref|YP_003403768.1| - 1.2e-38 131.5 1.6 2.5e-12 46.9 0.0 5.7 6 0 0 6 6 6 4 PAS domain PAS_4 PF08448.10 gi|284165489|ref|YP_003403768.1| - 5.2e-38 129.7 18.8 4.5e-11 43.0 0.5 5.9 6 0 0 6 6 6 5 PAS fold PAS_3 PF08447.12 gi|284165489|ref|YP_003403768.1| - 5e-31 106.8 1.1 6.2e-16 58.5 0.0 6.1 7 0 0 7 7 7 4 PAS fold HATPase_c PF02518.26 gi|284165489|ref|YP_003403768.1| - 1.2e-27 96.6 0.0 1.6e-26 93.0 0.0 2.5 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|284165489|ref|YP_003403768.1| - 1.5e-21 76.0 0.1 5.3e-09 35.9 0.0 5.0 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.7 gi|284165489|ref|YP_003403768.1| - 2.3e-09 37.4 0.6 0.026 14.7 0.0 5.0 3 2 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|284165489|ref|YP_003403768.1| - 1.1e-08 35.0 0.0 1.1e-08 35.0 0.0 3.7 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|284165489|ref|YP_003403768.1| - 0.00072 19.4 0.0 0.0043 16.9 0.0 2.3 2 1 0 2 2 2 1 GHKL domain Noelin-1 PF12308.8 gi|284165489|ref|YP_003403768.1| - 0.013 15.4 0.0 0.12 12.4 0.0 2.6 3 0 0 3 3 3 0 Neurogenesis glycoprotein PAS_11 PF14598.6 gi|284165489|ref|YP_003403768.1| - 0.014 15.5 0.0 0.3 11.2 0.0 2.7 3 0 0 3 3 3 0 PAS domain HATPase_c_3 PF13589.6 gi|284165489|ref|YP_003403768.1| - 0.068 13.0 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase dCache_3 PF14827.6 gi|284165489|ref|YP_003403768.1| - 0.12 12.0 1.8 3.3 7.3 0.0 3.5 3 1 0 3 3 3 0 Double sensory domain of two-component sensor kinase SnoaL_2 PF12680.7 gi|284165489|ref|YP_003403768.1| - 3 8.5 9.7 1.4 9.6 1.7 3.9 3 0 0 3 3 3 0 SnoaL-like domain GAF_2 PF13185.6 gi|284165490|ref|YP_003403769.1| - 1.7e-12 47.8 1.1 1.7e-12 47.8 1.1 1.7 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|284165490|ref|YP_003403769.1| - 5e-12 46.6 0.0 7.7e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|284165490|ref|YP_003403769.1| - 9.7e-11 42.1 0.0 1.5e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 GAF domain GCN5L1 PF06320.13 gi|284165490|ref|YP_003403769.1| - 0.052 13.7 0.0 0.094 12.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) PAS PF00989.25 gi|284165490|ref|YP_003403769.1| - 0.058 13.4 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 PAS fold Methyltrn_RNA_3 PF02598.17 gi|284165491|ref|YP_003403770.1| - 1e-68 231.9 0.0 1.2e-68 231.7 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase eIF-1a PF01176.19 gi|284165491|ref|YP_003403770.1| - 0.011 15.5 0.2 0.021 14.6 0.2 1.5 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Ribosomal_L3 PF00297.22 gi|284165492|ref|YP_003403771.1| - 3.1e-109 365.4 0.1 7.6e-109 364.1 0.1 1.6 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|284165493|ref|YP_003403772.1| - 1.7e-43 148.6 0.1 1.9e-43 148.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Gag_p6 PF08705.11 gi|284165493|ref|YP_003403772.1| - 0.078 13.2 0.0 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 Gag protein p6 Ribosomal_L23 PF00276.20 gi|284165494|ref|YP_003403773.1| - 2.8e-15 56.4 1.2 1.1e-14 54.6 1.2 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 PB1 PF00564.24 gi|284165494|ref|YP_003403773.1| - 0.078 12.9 0.2 0.095 12.6 0.2 1.1 1 0 0 1 1 1 0 PB1 domain SSrecog PF03531.14 gi|284165494|ref|YP_003403773.1| - 0.13 12.2 0.9 0.23 11.4 0.9 1.5 1 1 0 1 1 1 0 Structure-specific recognition protein (SSRP1) Ribosomal_L2_C PF03947.18 gi|284165495|ref|YP_003403774.1| - 1.1e-45 154.9 2.5 1.8e-45 154.2 2.5 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|284165495|ref|YP_003403774.1| - 4.2e-19 68.3 0.0 1.9e-18 66.2 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|284165496|ref|YP_003403775.1| - 1.9e-30 104.6 0.0 2.8e-30 104.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 Siah-Interact_N PF09032.11 gi|284165496|ref|YP_003403775.1| - 0.023 15.0 3.2 0.032 14.5 3.2 1.2 1 0 0 1 1 1 0 Siah interacting protein, N terminal Citrate_synt PF00285.21 gi|284165496|ref|YP_003403775.1| - 0.023 13.7 0.1 0.026 13.6 0.1 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain DUF3969 PF13108.6 gi|284165496|ref|YP_003403775.1| - 0.06 13.4 0.5 0.091 12.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) Ribosomal_L22 PF00237.19 gi|284165497|ref|YP_003403776.1| - 2.1e-20 72.9 0.0 2.6e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Skp1 PF01466.19 gi|284165497|ref|YP_003403776.1| - 0.11 12.7 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Skp1 family, dimerisation domain Ribosomal_S3_C PF00189.20 gi|284165498|ref|YP_003403777.1| - 1.4e-20 73.5 0.5 3.4e-20 72.3 0.5 1.7 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|284165498|ref|YP_003403777.1| - 1.5e-16 60.0 0.4 4.4e-16 58.5 0.0 1.9 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|284165498|ref|YP_003403777.1| - 0.035 13.9 1.3 0.091 12.6 0.2 2.3 3 0 0 3 3 3 0 KH domain KH_5 PF13184.6 gi|284165498|ref|YP_003403777.1| - 0.085 13.0 0.0 0.59 10.2 0.0 2.3 2 0 0 2 2 2 0 NusA-like KH domain Ribosomal_L29 PF00831.23 gi|284165499|ref|YP_003403778.1| - 7.1e-17 61.1 0.2 9e-17 60.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.13 gi|284165499|ref|YP_003403778.1| - 0.036 14.2 0.4 0.063 13.4 0.4 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 FUSC-like PF12805.7 gi|284165499|ref|YP_003403778.1| - 0.21 10.6 0.0 0.24 10.4 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS UPF0086 PF01868.16 gi|284165500|ref|YP_003403779.1| - 2.9e-28 97.6 0.0 3.3e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.20 gi|284165501|ref|YP_003403780.1| - 2.2e-25 88.6 1.7 2.7e-25 88.2 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|284165501|ref|YP_003403780.1| - 0.00021 21.6 0.0 0.00036 20.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|284165502|ref|YP_003403781.1| - 7e-37 126.2 0.3 8.4e-37 126.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|284165503|ref|YP_003403782.1| - 4e-24 84.9 0.0 5e-24 84.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|284165503|ref|YP_003403782.1| - 1.7e-06 27.8 0.3 3.5e-06 26.8 0.3 1.5 1 0 0 1 1 1 1 KOW motif PLRV_ORF5 PF01690.17 gi|284165503|ref|YP_003403782.1| - 0.037 12.8 0.5 0.043 12.6 0.5 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Ribosomal_S4e PF00900.20 gi|284165504|ref|YP_003403783.1| - 1.1e-21 76.5 0.0 1.8e-21 75.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|284165504|ref|YP_003403783.1| - 2.9e-11 43.3 0.2 5.2e-11 42.5 0.2 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|284165504|ref|YP_003403783.1| - 4.5e-06 26.3 0.0 7.4e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 gi|284165504|ref|YP_003403783.1| - 0.024 14.5 0.0 0.057 13.2 0.0 1.6 2 0 0 2 2 2 0 S4 domain Peptidase_S24 PF00717.23 gi|284165504|ref|YP_003403783.1| - 0.11 12.5 0.3 1.1 9.3 0.1 2.3 2 0 0 2 2 2 0 Peptidase S24-like Ribosomal_L5_C PF00673.21 gi|284165505|ref|YP_003403784.1| - 2.5e-20 72.5 0.0 4.6e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|284165505|ref|YP_003403784.1| - 3.6e-17 62.4 0.0 7.1e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|284165506|ref|YP_003403785.1| - 2.7e-11 43.1 2.9 3.2e-11 42.8 2.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|284165506|ref|YP_003403785.1| - 0.0059 16.5 0.4 0.0073 16.2 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_S8 PF00410.19 gi|284165507|ref|YP_003403786.1| - 2e-23 82.7 0.0 2.5e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|284165508|ref|YP_003403787.1| - 1.1e-27 96.5 1.2 1.6e-14 54.3 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|284165508|ref|YP_003403787.1| - 0.43 10.8 5.1 1.5 9.0 0.2 3.3 2 2 2 4 4 4 0 Hsp20/alpha crystallin family Glyco_hydro_65C PF03633.15 gi|284165508|ref|YP_003403787.1| - 2.9 7.9 5.1 14 5.7 0.7 3.2 2 2 2 4 4 4 0 Glycosyl hydrolase family 65, C-terminal domain GNAT_like PF18407.1 gi|284165508|ref|YP_003403787.1| - 4.4 7.7 5.6 39 4.7 0.1 3.5 4 0 0 4 4 4 0 GCN5-related N-acetyltransferase like domain Ribosomal_L32e PF01655.18 gi|284165509|ref|YP_003403788.1| - 3.7e-34 117.4 0.5 7.3e-34 116.4 0.5 1.5 1 0 0 1 1 1 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|284165509|ref|YP_003403788.1| - 3.3e-13 50.0 1.1 3.3e-13 50.0 1.1 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|284165509|ref|YP_003403788.1| - 1.2e-06 28.2 0.0 4.7e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|284165509|ref|YP_003403788.1| - 1.6e-06 27.7 1.4 0.078 12.9 0.2 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|284165509|ref|YP_003403788.1| - 8.2e-06 25.8 0.3 1.6e-05 24.9 0.3 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|284165509|ref|YP_003403788.1| - 0.00035 20.8 0.0 0.0018 18.5 0.0 2.1 2 0 0 2 2 2 1 Pathogenicity locus HHH_3 PF12836.7 gi|284165509|ref|YP_003403788.1| - 0.039 14.2 0.2 2.7 8.3 0.1 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|284165509|ref|YP_003403788.1| - 0.052 13.9 0.9 1 9.8 0.2 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain Ribosomal_L19e PF01280.20 gi|284165510|ref|YP_003403789.1| - 1.9e-58 196.6 7.1 2.1e-58 196.5 7.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.9 gi|284165510|ref|YP_003403789.1| - 0.0034 17.1 0.7 0.0034 17.1 0.7 2.1 2 0 0 2 2 2 1 Short C-terminal domain KELK PF15796.5 gi|284165510|ref|YP_003403789.1| - 0.0075 16.7 0.8 0.018 15.4 0.8 1.6 1 0 0 1 1 1 1 KELK-motif containing domain of MRCK Ser/Thr protein kinase Lant_dehydr_C PF14028.6 gi|284165510|ref|YP_003403789.1| - 0.032 13.8 0.5 0.038 13.5 0.5 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term DUF3253 PF11625.8 gi|284165510|ref|YP_003403789.1| - 0.039 14.2 2.1 0.19 11.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) CDC45 PF02724.14 gi|284165510|ref|YP_003403789.1| - 1 7.6 4.0 1.1 7.5 4.0 1.0 1 0 0 1 1 1 0 CDC45-like protein Ribosomal_L5e PF17144.4 gi|284165511|ref|YP_003403790.1| - 4.1e-31 108.2 0.0 1.4e-19 70.7 0.0 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|284165511|ref|YP_003403790.1| - 1.4e-09 38.3 0.0 2.2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|284165512|ref|YP_003403791.1| - 3.7e-24 84.5 1.0 8.5e-24 83.3 0.3 2.0 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|284165512|ref|YP_003403791.1| - 4.5e-23 80.5 0.2 9.6e-23 79.4 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|284165513|ref|YP_003403792.1| - 2.2e-11 43.5 0.0 3.6e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|284165514|ref|YP_003403793.1| - 1.6e-18 67.6 0.6 1.6e-18 67.6 0.6 1.5 2 0 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A K_oxygenase PF13434.6 gi|284165514|ref|YP_003403793.1| - 0.13 11.4 0.2 4.9 6.2 0.0 2.0 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) SecY PF00344.20 gi|284165515|ref|YP_003403794.1| - 1.7e-69 234.4 19.0 2e-69 234.2 19.0 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|284165515|ref|YP_003403794.1| - 2.2e-11 43.4 0.5 7.4e-11 41.7 0.5 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p Thiolase_N PF00108.23 gi|284165516|ref|YP_003403795.1| - 5.3e-56 189.9 0.0 7.4e-56 189.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284165516|ref|YP_003403795.1| - 4.1e-07 29.7 0.2 1.1e-06 28.3 0.1 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284165516|ref|YP_003403795.1| - 0.084 12.4 1.5 0.18 11.4 0.5 1.9 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|284165517|ref|YP_003403796.1| - 4.5e-05 23.4 2.5 0.00021 21.2 2.5 2.0 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated COX4_pro PF03626.14 gi|284165518|ref|YP_003403797.1| - 2.2e-12 47.2 10.2 2.6e-12 47.0 10.2 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV MARVEL PF01284.23 gi|284165518|ref|YP_003403797.1| - 0.0071 16.4 0.6 0.0071 16.4 0.6 1.7 1 1 1 2 2 2 1 Membrane-associating domain Lig_chan PF00060.26 gi|284165518|ref|YP_003403797.1| - 0.1 12.5 0.9 0.14 12.0 0.9 1.5 1 1 0 1 1 1 0 Ligand-gated ion channel DUF1673 PF07895.11 gi|284165518|ref|YP_003403797.1| - 0.4 10.4 4.3 0.46 10.2 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) zf-Di19 PF05605.12 gi|284165520|ref|YP_003403799.1| - 0.0041 17.4 0.2 0.007 16.6 0.2 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|284165520|ref|YP_003403799.1| - 0.0049 17.2 0.2 0.0075 16.7 0.2 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|284165520|ref|YP_003403799.1| - 0.015 15.4 0.1 0.026 14.7 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-CHCC PF10276.9 gi|284165520|ref|YP_003403799.1| - 0.016 15.2 0.4 0.028 14.5 0.4 1.4 1 0 0 1 1 1 0 Zinc-finger domain Sgf11 PF08209.11 gi|284165520|ref|YP_003403799.1| - 0.021 14.4 0.1 0.028 14.0 0.1 1.2 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) DUF2256 PF10013.9 gi|284165520|ref|YP_003403799.1| - 0.026 14.6 0.1 0.039 14.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zinc_ribbon_9 PF14369.6 gi|284165520|ref|YP_003403799.1| - 0.045 14.0 0.4 0.092 13.0 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon zf-C2HC_2 PF13913.6 gi|284165520|ref|YP_003403799.1| - 0.085 12.8 0.6 0.13 12.2 0.6 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type CpXC PF14353.6 gi|284165520|ref|YP_003403799.1| - 0.1 12.6 0.1 0.13 12.3 0.1 1.3 1 1 0 1 1 1 0 CpXC protein HNH PF01844.23 gi|284165520|ref|YP_003403799.1| - 0.1 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 HNH endonuclease zf-C2H2_4 PF13894.6 gi|284165520|ref|YP_003403799.1| - 0.11 13.4 1.1 0.14 13.0 0.2 1.7 2 0 0 2 2 1 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|284165520|ref|YP_003403799.1| - 0.14 11.9 0.8 0.24 11.2 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|284165520|ref|YP_003403799.1| - 0.2 11.6 0.5 0.38 10.6 0.5 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif Peptidase_S8 PF00082.22 gi|284165521|ref|YP_003403800.1| - 8.3e-46 156.6 3.7 1.2e-45 156.1 3.7 1.2 1 0 0 1 1 1 1 Subtilase family COX1 PF00115.20 gi|284165522|ref|YP_003403801.1| - 6.6e-125 417.3 74.0 6.6e-125 417.3 74.0 2.8 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|284165522|ref|YP_003403801.1| - 2e-19 70.5 20.7 2e-19 70.5 20.7 3.3 3 2 1 4 4 4 1 Cytochrome c oxidase subunit III COX2 PF00116.20 gi|284165523|ref|YP_003403802.1| - 5.2e-14 52.2 0.1 2.7e-13 49.8 0.0 2.0 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|284165523|ref|YP_003403802.1| - 0.00024 21.1 0.0 0.0049 16.9 0.0 2.6 2 2 1 3 3 3 1 Cupredoxin-like domain ADK PF00406.22 gi|284165526|ref|YP_003403805.1| - 6e-43 146.5 0.0 7.3e-43 146.3 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|284165526|ref|YP_003403805.1| - 1.5e-20 74.0 0.4 4.3e-20 72.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|284165526|ref|YP_003403805.1| - 1e-16 60.6 2.4 2e-16 59.6 2.4 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|284165526|ref|YP_003403805.1| - 6.9e-07 29.9 0.2 1.3e-06 29.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|284165526|ref|YP_003403805.1| - 0.00025 21.2 0.0 0.0016 18.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain TF_Zn_Ribbon PF08271.12 gi|284165526|ref|YP_003403805.1| - 0.00082 18.8 4.8 0.0022 17.5 4.8 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Ploopntkinase3 PF18751.1 gi|284165526|ref|YP_003403805.1| - 0.0015 18.5 0.0 0.024 14.5 0.0 2.3 2 1 0 2 2 2 1 P-loop Nucleotide Kinase3 DZR PF12773.7 gi|284165526|ref|YP_003403805.1| - 0.0097 15.9 0.3 0.017 15.2 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-IS66 PF13005.7 gi|284165526|ref|YP_003403805.1| - 0.021 15.2 4.2 0.15 12.5 1.2 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|284165526|ref|YP_003403805.1| - 0.025 14.6 0.1 0.034 14.1 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_recom PF13408.6 gi|284165526|ref|YP_003403805.1| - 0.042 14.4 0.0 1.5 9.4 0.0 2.4 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain RuvB_N PF05496.12 gi|284165526|ref|YP_003403805.1| - 0.052 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF3039 PF11238.8 gi|284165526|ref|YP_003403805.1| - 0.063 13.0 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) NinF PF05810.12 gi|284165526|ref|YP_003403805.1| - 0.072 13.0 0.3 0.13 12.1 0.3 1.5 1 0 0 1 1 1 0 NinF protein OrfB_Zn_ribbon PF07282.11 gi|284165526|ref|YP_003403805.1| - 0.076 12.9 1.0 0.14 12.1 1.0 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.19 gi|284165526|ref|YP_003403805.1| - 0.11 12.4 0.6 0.42 10.4 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|284165526|ref|YP_003403805.1| - 0.13 12.4 1.7 0.25 11.5 1.7 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|284165526|ref|YP_003403805.1| - 0.28 11.1 3.8 6.2 6.8 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.6 gi|284165526|ref|YP_003403805.1| - 1.8 8.5 6.9 2.5 8.1 2.9 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 EMC3_TMCO1 PF01956.16 gi|284165528|ref|YP_003403807.1| - 6.5e-40 136.6 0.3 9.2e-40 136.1 0.3 1.2 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|284165528|ref|YP_003403807.1| - 0.00017 21.6 2.1 0.13 12.2 0.0 2.2 1 1 1 2 2 2 2 60Kd inner membrane protein Pinin_SDK_memA PF04696.13 gi|284165528|ref|YP_003403807.1| - 0.002 18.2 1.8 0.0029 17.7 1.8 1.3 1 0 0 1 1 1 1 pinin/SDK/memA/ protein conserved region HemX PF04375.14 gi|284165528|ref|YP_003403807.1| - 0.0064 15.8 1.0 0.01 15.2 1.0 1.2 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase MIF4G_like_2 PF09090.11 gi|284165528|ref|YP_003403807.1| - 0.085 12.3 0.8 0.14 11.6 0.8 1.3 1 0 0 1 1 1 0 MIF4G like DUF4746 PF15928.5 gi|284165528|ref|YP_003403807.1| - 0.12 11.8 3.0 0.19 11.2 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) Ufd2P_core PF10408.9 gi|284165528|ref|YP_003403807.1| - 0.15 10.7 0.2 0.19 10.3 0.2 1.1 1 0 0 1 1 1 0 Ubiquitin elongating factor core DUF4199 PF13858.6 gi|284165528|ref|YP_003403807.1| - 0.22 11.9 6.6 0.19 12.1 3.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) Golgin_A5 PF09787.9 gi|284165528|ref|YP_003403807.1| - 0.48 9.9 9.6 0.72 9.3 9.6 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 HAUS6_N PF14661.6 gi|284165528|ref|YP_003403807.1| - 0.6 9.7 4.3 1.1 8.7 4.3 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus ABC_tran_CTD PF16326.5 gi|284165528|ref|YP_003403807.1| - 1.3 9.3 15.7 0.59 10.4 2.9 2.6 1 1 1 2 2 2 0 ABC transporter C-terminal domain Casc1_N PF15927.5 gi|284165528|ref|YP_003403807.1| - 2 8.0 12.9 4.1 7.1 12.9 1.4 1 0 0 1 1 1 0 Cancer susceptibility candidate 1 N-terminus PEARLI-4 PF05278.12 gi|284165528|ref|YP_003403807.1| - 2.8 7.4 8.0 4.1 6.9 8.0 1.1 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) NAM-associated PF14303.6 gi|284165528|ref|YP_003403807.1| - 4.2 8.1 8.6 7 7.3 8.6 1.3 1 0 0 1 1 1 0 No apical meristem-associated C-terminal domain Cytidylate_kin2 PF13189.6 gi|284165529|ref|YP_003403808.1| - 8e-20 71.7 0.1 1.1e-17 64.7 0.1 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|284165529|ref|YP_003403808.1| - 5.5e-16 59.3 0.0 7e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|284165529|ref|YP_003403808.1| - 1.1e-13 51.7 0.0 2.9e-13 50.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|284165529|ref|YP_003403808.1| - 5.2e-09 36.1 0.0 6.5e-05 22.8 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|284165529|ref|YP_003403808.1| - 7.3e-08 32.7 0.0 1.4e-07 31.8 0.0 1.5 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|284165529|ref|YP_003403808.1| - 1.3e-07 31.8 0.2 6.3e-07 29.6 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|284165529|ref|YP_003403808.1| - 0.00027 21.2 0.2 0.00078 19.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|284165529|ref|YP_003403808.1| - 0.00033 20.8 0.3 0.0012 18.9 0.3 1.8 1 1 0 1 1 1 1 Shikimate kinase Thymidylate_kin PF02223.17 gi|284165529|ref|YP_003403808.1| - 0.00046 19.9 0.2 0.66 9.6 0.1 2.3 1 1 0 2 2 2 2 Thymidylate kinase AAA_22 PF13401.6 gi|284165529|ref|YP_003403808.1| - 0.0017 18.6 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284165529|ref|YP_003403808.1| - 0.0035 17.7 0.0 0.0054 17.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284165529|ref|YP_003403808.1| - 0.0084 16.5 0.5 0.013 15.9 0.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|284165529|ref|YP_003403808.1| - 0.014 14.7 0.2 0.08 12.2 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin dNK PF01712.19 gi|284165529|ref|YP_003403808.1| - 0.024 14.5 0.0 0.084 12.7 0.0 1.9 2 0 0 2 2 2 0 Deoxynucleoside kinase KTI12 PF08433.10 gi|284165529|ref|YP_003403808.1| - 0.032 13.7 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|284165529|ref|YP_003403808.1| - 0.066 13.6 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|284165529|ref|YP_003403808.1| - 0.09 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|284165529|ref|YP_003403808.1| - 0.15 11.1 0.0 1.1 8.2 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|284165529|ref|YP_003403808.1| - 0.16 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_tran PF00005.27 gi|284165529|ref|YP_003403808.1| - 0.19 12.2 0.0 0.28 11.7 0.0 1.4 1 1 0 1 1 1 0 ABC transporter TruB_N PF01509.18 gi|284165530|ref|YP_003403809.1| - 6.8e-23 81.7 0.5 3.1e-13 50.3 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|284165530|ref|YP_003403809.1| - 6.7e-20 71.0 0.1 1.3e-19 70.1 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|284165530|ref|YP_003403809.1| - 2e-08 34.2 0.1 3.7e-08 33.3 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|284165530|ref|YP_003403809.1| - 2.3e-08 33.9 0.2 3.8e-08 33.2 0.2 1.4 1 0 0 1 1 1 1 PUA domain YHS PF04945.13 gi|284165531|ref|YP_003403810.1| - 3.1e-09 36.8 1.7 4e-09 36.4 1.7 1.2 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|284165531|ref|YP_003403810.1| - 0.00035 20.5 0.4 0.00039 20.3 0.4 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|284165531|ref|YP_003403810.1| - 0.0023 17.4 0.5 0.0029 17.0 0.5 1.2 1 0 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 DNA_ligase_ZBD PF03119.16 gi|284165531|ref|YP_003403810.1| - 0.02 14.9 1.0 0.027 14.5 1.0 1.4 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|284165531|ref|YP_003403810.1| - 0.024 14.5 0.6 0.03 14.2 0.1 1.5 2 0 0 2 2 2 0 Rad50 zinc hook motif FAP206 PF12018.8 gi|284165531|ref|YP_003403810.1| - 0.059 12.9 0.0 0.063 12.8 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function zinc_ribbon_2 PF13240.6 gi|284165531|ref|YP_003403810.1| - 0.08 12.7 1.5 0.24 11.2 0.3 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L24e PF01246.20 gi|284165531|ref|YP_003403810.1| - 0.086 13.1 0.1 0.091 13.0 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L24e zf_CopZ PF18423.1 gi|284165531|ref|YP_003403810.1| - 0.48 10.4 4.0 28 4.8 4.0 2.1 1 1 0 1 1 1 0 Zinc binding domain zf-IS66 PF13005.7 gi|284165534|ref|YP_003403813.1| - 0.056 13.8 0.7 9 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.6 gi|284165534|ref|YP_003403813.1| - 0.066 13.1 0.1 0.066 13.1 0.1 1.7 2 0 0 2 2 2 0 Nudix N-terminal Nmad3 PF18754.1 gi|284165535|ref|YP_003403814.1| - 2e-39 135.7 0.0 2.2e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 Hexapep PF00132.24 gi|284165538|ref|YP_003403817.1| - 5.3e-09 35.5 0.7 5.3e-09 35.5 0.7 2.5 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284165538|ref|YP_003403817.1| - 1.6e-08 34.1 0.8 1.6e-08 34.1 0.8 2.3 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Pyr_redox_2 PF07992.14 gi|284165539|ref|YP_003403818.1| - 2e-40 138.9 0.2 2.4e-40 138.6 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284165539|ref|YP_003403818.1| - 4.4e-10 40.0 0.5 2.1e-08 34.6 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HTH_40 PF14493.6 gi|284165539|ref|YP_003403818.1| - 0.054 13.9 0.1 0.15 12.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain AlaDh_PNT_C PF01262.21 gi|284165539|ref|YP_003403818.1| - 0.1 11.8 1.8 8.4 5.6 0.3 2.6 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Spore_SspJ PF09575.10 gi|284165539|ref|YP_003403818.1| - 1.1 9.7 5.1 0.72 10.3 0.1 2.9 3 0 0 3 3 3 0 Small spore protein J (Spore_SspJ) Arginase PF00491.21 gi|284165540|ref|YP_003403819.1| - 1.6e-77 260.8 1.8 1.9e-77 260.6 1.8 1.0 1 0 0 1 1 1 1 Arginase family Fe_dep_repr_C PF02742.15 gi|284165541|ref|YP_003403820.1| - 7e-28 96.5 0.9 1.7e-27 95.3 0.6 1.9 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|284165541|ref|YP_003403820.1| - 1.6e-20 73.0 0.5 2.7e-20 72.3 0.5 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|284165541|ref|YP_003403820.1| - 6.1e-12 45.6 0.1 1.9e-11 44.1 0.1 1.9 2 0 0 2 2 1 1 FeoA domain MarR PF01047.22 gi|284165541|ref|YP_003403820.1| - 1.4e-08 34.6 0.0 2.6e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|284165541|ref|YP_003403820.1| - 1.1e-07 31.7 0.1 5.9e-07 29.3 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|284165541|ref|YP_003403820.1| - 3.2e-06 26.6 0.0 6e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|284165541|ref|YP_003403820.1| - 3.9e-06 27.3 0.3 1e-05 25.9 0.3 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|284165541|ref|YP_003403820.1| - 4.6e-05 23.1 0.0 0.0012 18.6 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284165541|ref|YP_003403820.1| - 5.9e-05 23.0 0.0 0.00013 21.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|284165541|ref|YP_003403820.1| - 0.00011 22.0 0.1 0.00033 20.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|284165541|ref|YP_003403820.1| - 0.00012 22.2 0.2 0.00026 21.0 0.2 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|284165541|ref|YP_003403820.1| - 0.00019 21.0 0.0 0.00045 19.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|284165541|ref|YP_003403820.1| - 0.00025 21.3 0.1 0.00059 20.1 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HrcA_DNA-bdg PF03444.15 gi|284165541|ref|YP_003403820.1| - 0.00041 20.0 0.0 0.00068 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_12 PF08461.10 gi|284165541|ref|YP_003403820.1| - 0.00067 19.5 0.1 0.0025 17.7 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|284165541|ref|YP_003403820.1| - 0.00099 19.0 0.1 0.0018 18.2 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|284165541|ref|YP_003403820.1| - 0.0011 19.0 0.0 0.0039 17.2 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|284165541|ref|YP_003403820.1| - 0.0062 16.9 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_5 PF01022.20 gi|284165541|ref|YP_003403820.1| - 0.0087 15.9 0.0 0.02 14.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|284165541|ref|YP_003403820.1| - 0.011 15.4 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_1 PF00126.27 gi|284165541|ref|YP_003403820.1| - 0.012 15.5 0.0 0.033 14.1 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|284165541|ref|YP_003403820.1| - 0.017 14.9 0.0 0.044 13.6 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain Topoisom_bac PF01131.20 gi|284165541|ref|YP_003403820.1| - 0.025 13.6 0.1 0.036 13.1 0.1 1.2 1 0 0 1 1 1 0 DNA topoisomerase FeoC PF09012.10 gi|284165541|ref|YP_003403820.1| - 0.046 13.8 0.0 0.094 12.8 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_45 PF14947.6 gi|284165541|ref|YP_003403820.1| - 0.08 12.9 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HxlR PF01638.17 gi|284165541|ref|YP_003403820.1| - 0.092 12.6 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_CodY PF08222.11 gi|284165541|ref|YP_003403820.1| - 0.098 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_13 PF11972.8 gi|284165541|ref|YP_003403820.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Put_DNA-bind_N PF06971.13 gi|284165541|ref|YP_003403820.1| - 0.12 12.4 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HemN_C PF06969.16 gi|284165541|ref|YP_003403820.1| - 0.14 12.2 0.0 0.56 10.3 0.0 2.0 2 0 0 2 2 2 0 HemN C-terminal domain Phage_terminase PF10668.9 gi|284165541|ref|YP_003403820.1| - 0.18 11.9 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit Zip PF02535.22 gi|284165542|ref|YP_003403821.1| - 9.2e-05 21.8 9.8 9.2e-05 21.8 9.8 2.5 2 1 0 2 2 2 1 ZIP Zinc transporter HrcA_DNA-bdg PF03444.15 gi|284165543|ref|YP_003403822.1| - 5.7e-37 125.2 0.1 8.5e-37 124.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|284165543|ref|YP_003403822.1| - 2.4e-08 34.2 0.0 4.1e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|284165543|ref|YP_003403822.1| - 2.7e-06 27.2 0.0 4.4e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|284165543|ref|YP_003403822.1| - 0.03 14.2 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284165543|ref|YP_003403822.1| - 0.03 14.4 0.0 0.068 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|284165543|ref|YP_003403822.1| - 0.033 13.7 0.2 0.063 12.8 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Put_DNA-bind_N PF06971.13 gi|284165543|ref|YP_003403822.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Rio2_N PF09202.11 gi|284165543|ref|YP_003403822.1| - 0.2 11.9 0.0 0.33 11.2 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal DNA_topoisoIV PF00521.20 gi|284165544|ref|YP_003403823.1| - 4.9e-157 523.2 0.0 6e-157 522.9 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|284165544|ref|YP_003403823.1| - 6.1e-77 252.9 12.1 4.5e-14 51.7 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller IKI3 PF04762.12 gi|284165544|ref|YP_003403823.1| - 0.014 13.4 0.1 0.041 11.9 0.0 1.7 1 1 1 2 2 2 0 IKI3 family Nnf1 PF03980.14 gi|284165544|ref|YP_003403823.1| - 1.1 9.6 7.0 2.7 8.4 6.5 1.9 1 1 0 1 1 1 0 Nnf1 DNA_gyraseB PF00204.25 gi|284165545|ref|YP_003403824.1| - 4.2e-61 205.4 1.3 8.1e-61 204.5 1.3 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|284165545|ref|YP_003403824.1| - 1.1e-29 102.3 0.0 2.3e-29 101.4 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|284165545|ref|YP_003403824.1| - 2.1e-23 82.9 0.1 6.4e-23 81.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|284165545|ref|YP_003403824.1| - 7.9e-18 64.6 0.0 2.1e-17 63.2 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|284165545|ref|YP_003403824.1| - 0.00056 19.8 0.1 0.0013 18.6 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Proteasome PF00227.26 gi|284165546|ref|YP_003403825.1| - 1.4e-44 151.9 0.1 1.6e-44 151.7 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.26 gi|284165547|ref|YP_003403826.1| - 1.2e-61 207.5 0.0 1.5e-61 207.2 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|284165547|ref|YP_003403826.1| - 7.8e-14 51.0 0.1 1.5e-13 50.1 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature ABC2_membrane_3 PF12698.7 gi|284165548|ref|YP_003403827.1| - 0.9 8.6 22.6 0.016 14.3 13.7 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|284165549|ref|YP_003403828.1| - 1.1e-27 97.2 0.0 1.9e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165549|ref|YP_003403828.1| - 1.1e-10 41.8 4.8 2.6e-07 30.8 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284165549|ref|YP_003403828.1| - 0.0028 17.4 0.1 0.0069 16.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|284165549|ref|YP_003403828.1| - 0.0057 17.3 0.0 0.011 16.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|284165549|ref|YP_003403828.1| - 0.009 16.4 0.6 0.022 15.1 0.6 2.0 1 1 0 1 1 1 1 AAA ATPase domain MukB PF04310.12 gi|284165549|ref|YP_003403828.1| - 0.012 15.5 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal Zeta_toxin PF06414.12 gi|284165549|ref|YP_003403828.1| - 0.012 14.9 0.0 0.69 9.2 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.22 gi|284165549|ref|YP_003403828.1| - 0.017 14.7 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|284165549|ref|YP_003403828.1| - 0.031 14.8 0.0 0.046 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284165549|ref|YP_003403828.1| - 0.053 13.8 1.0 0.29 11.4 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|284165549|ref|YP_003403828.1| - 0.075 12.7 0.0 0.51 10.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|284165549|ref|YP_003403828.1| - 0.083 13.2 0.8 0.16 12.3 0.4 2.0 1 1 0 2 2 2 0 AAA domain RelB_N PF18506.1 gi|284165549|ref|YP_003403828.1| - 0.095 12.5 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 RelB Antitoxin alpha helical domain AAA PF00004.29 gi|284165549|ref|YP_003403828.1| - 0.1 13.0 0.0 0.33 11.4 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|284165549|ref|YP_003403828.1| - 0.13 11.6 0.1 1.7 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Nramp PF01566.18 gi|284165550|ref|YP_003403829.1| - 7.9e-34 117.2 26.6 1.1e-33 116.7 26.6 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF4212 PF13937.6 gi|284165550|ref|YP_003403829.1| - 0.46 10.9 3.5 0.44 11.0 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) TauE PF01925.19 gi|284165551|ref|YP_003403830.1| - 1e-28 100.6 40.7 1.3e-28 100.3 40.7 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Usp PF00582.26 gi|284165552|ref|YP_003403831.1| - 9.3e-33 113.7 1.1 1.2e-32 113.4 1.1 1.1 1 0 0 1 1 1 1 Universal stress protein family VWA_3 PF13768.6 gi|284165552|ref|YP_003403831.1| - 0.048 13.6 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain PAS_4 PF08448.10 gi|284165554|ref|YP_003403833.1| - 2.4e-44 150.1 14.4 4e-12 46.3 0.1 4.6 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|284165554|ref|YP_003403833.1| - 4.4e-35 120.1 0.1 3.1e-15 56.3 0.0 4.6 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|284165554|ref|YP_003403833.1| - 2.3e-29 102.2 0.0 6.8e-29 100.6 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|284165554|ref|YP_003403833.1| - 1.1e-25 89.8 2.8 5.1e-11 42.6 0.0 4.7 4 1 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|284165554|ref|YP_003403833.1| - 7.2e-12 45.1 0.8 0.0061 16.6 0.0 4.9 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.7 gi|284165554|ref|YP_003403833.1| - 2.7e-11 43.6 1.6 0.086 13.0 0.0 5.3 4 2 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|284165554|ref|YP_003403833.1| - 3.8e-10 39.9 1.0 0.00058 20.1 0.1 4.9 4 0 0 4 4 4 2 PAS fold HisKA PF00512.25 gi|284165554|ref|YP_003403833.1| - 1.3e-09 37.9 0.1 1.3e-09 37.9 0.1 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|284165554|ref|YP_003403833.1| - 0.00013 21.8 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|284165554|ref|YP_003403833.1| - 0.00063 19.6 0.0 0.018 14.9 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284165554|ref|YP_003403833.1| - 0.011 15.6 0.0 0.041 13.8 0.0 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Ion_trans_2 PF07885.16 gi|284165555|ref|YP_003403834.1| - 0.42 10.6 17.9 0.027 14.4 11.6 2.2 2 1 0 2 2 2 0 Ion channel HalOD1 PF18545.1 gi|284165556|ref|YP_003403835.1| - 4e-16 59.0 2.4 5e-16 58.7 1.6 1.5 2 0 0 2 2 2 1 Halobacterial output domain 1 HTH_24 PF13412.6 gi|284165557|ref|YP_003403836.1| - 4.4e-13 48.6 0.5 7.5e-13 47.8 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284165557|ref|YP_003403836.1| - 3.6e-11 42.7 0.4 7.4e-11 41.7 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284165557|ref|YP_003403836.1| - 2.8e-09 36.8 0.2 8.5e-09 35.2 0.2 1.8 2 0 0 2 2 1 1 HTH domain HTH_DeoR PF08220.12 gi|284165557|ref|YP_003403836.1| - 4.2e-06 26.4 0.4 9.2e-06 25.3 0.1 1.7 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284165557|ref|YP_003403836.1| - 3.2e-05 24.0 0.0 6e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|284165557|ref|YP_003403836.1| - 3.8e-05 23.5 0.1 0.0002 21.2 0.0 2.1 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|284165557|ref|YP_003403836.1| - 3.8e-05 23.4 0.1 8e-05 22.4 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284165557|ref|YP_003403836.1| - 4.2e-05 23.4 0.0 0.0001 22.2 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|284165557|ref|YP_003403836.1| - 5.9e-05 22.8 0.1 0.00012 21.8 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|284165557|ref|YP_003403836.1| - 0.00011 22.0 0.2 0.00018 21.4 0.2 1.5 1 1 0 1 1 1 1 MarR family GntR PF00392.21 gi|284165557|ref|YP_003403836.1| - 0.00016 21.3 0.1 0.00036 20.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|284165557|ref|YP_003403836.1| - 0.00019 21.7 0.1 0.00049 20.4 0.1 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|284165557|ref|YP_003403836.1| - 0.00033 20.6 0.0 0.00054 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|284165557|ref|YP_003403836.1| - 0.00068 19.4 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|284165557|ref|YP_003403836.1| - 0.0011 19.1 0.0 0.0021 18.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|284165557|ref|YP_003403836.1| - 0.0011 19.3 0.1 0.0023 18.3 0.1 1.5 1 0 0 1 1 1 1 FaeA-like protein HrcA_DNA-bdg PF03444.15 gi|284165557|ref|YP_003403836.1| - 0.0023 17.5 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Mga PF08280.11 gi|284165557|ref|YP_003403836.1| - 0.0023 17.9 0.0 0.0044 17.0 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4_2 PF08281.12 gi|284165557|ref|YP_003403836.1| - 0.0025 17.5 0.1 0.0066 16.1 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_CodY PF08222.11 gi|284165557|ref|YP_003403836.1| - 0.0034 16.9 0.8 0.0083 15.7 0.1 1.8 2 0 0 2 2 2 1 CodY helix-turn-helix domain RPA_C PF08784.11 gi|284165557|ref|YP_003403836.1| - 0.0057 17.3 0.3 0.06 14.0 0.0 2.1 2 0 0 2 2 2 1 Replication protein A C terminal AbiEi_4 PF13338.6 gi|284165557|ref|YP_003403836.1| - 0.007 16.5 0.3 3.4 7.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin HTH_5 PF01022.20 gi|284165557|ref|YP_003403836.1| - 0.0085 15.9 0.0 0.019 14.8 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Put_DNA-bind_N PF06971.13 gi|284165557|ref|YP_003403836.1| - 0.0087 16.1 0.5 0.025 14.6 0.1 1.9 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus Sigma70_r4 PF04545.16 gi|284165557|ref|YP_003403836.1| - 0.013 15.0 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|284165557|ref|YP_003403836.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|284165557|ref|YP_003403836.1| - 0.014 15.2 0.0 0.04 13.8 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DDRGK PF09756.9 gi|284165557|ref|YP_003403836.1| - 0.016 14.8 0.1 0.036 13.6 0.0 1.5 2 0 0 2 2 2 0 DDRGK domain HTH_29 PF13551.6 gi|284165557|ref|YP_003403836.1| - 0.017 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix EAP30 PF04157.16 gi|284165557|ref|YP_003403836.1| - 0.03 13.6 0.2 0.2 10.9 0.1 1.9 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_30 PF13556.6 gi|284165557|ref|YP_003403836.1| - 0.031 14.1 0.0 0.074 12.9 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_17 PF12728.7 gi|284165557|ref|YP_003403836.1| - 0.034 14.3 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Imm68 PF15583.6 gi|284165557|ref|YP_003403836.1| - 0.044 14.0 0.7 5.5 7.2 0.0 2.3 2 1 0 2 2 2 0 Immunity protein 68 DUF4423 PF14394.6 gi|284165557|ref|YP_003403836.1| - 0.05 13.3 0.0 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DUF1877 PF08974.10 gi|284165557|ref|YP_003403836.1| - 0.055 13.6 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1877) HTH_Tnp_1_2 PF13022.6 gi|284165557|ref|YP_003403836.1| - 0.055 13.6 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase RepL PF05732.11 gi|284165557|ref|YP_003403836.1| - 0.056 12.9 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_36 PF13730.6 gi|284165557|ref|YP_003403836.1| - 0.057 13.4 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|284165557|ref|YP_003403836.1| - 0.072 13.4 1.1 0.23 11.9 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|284165557|ref|YP_003403836.1| - 0.1 13.1 0.1 0.21 12.0 0.1 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain GerE PF00196.19 gi|284165557|ref|YP_003403836.1| - 0.1 12.2 0.2 0.62 9.7 0.0 2.3 2 1 0 2 2 2 0 Bacterial regulatory proteins, luxR family MerR PF00376.23 gi|284165557|ref|YP_003403836.1| - 0.11 12.3 0.1 0.31 10.8 0.1 1.9 1 1 0 1 1 1 0 MerR family regulatory protein LexA_DNA_bind PF01726.16 gi|284165557|ref|YP_003403836.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Fas_alpha_ACP PF18325.1 gi|284165557|ref|YP_003403836.1| - 0.13 12.6 0.1 0.24 11.7 0.0 1.4 2 0 0 2 2 1 0 Fatty acid synthase subunit alpha Acyl carrier domain TxDE PF18711.1 gi|284165557|ref|YP_003403836.1| - 0.13 12.4 0.0 4.5 7.5 0.0 2.3 2 0 0 2 2 2 0 Toxoflavin-degrading enzyme Ribosomal_S25 PF03297.15 gi|284165557|ref|YP_003403836.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 S25 ribosomal protein HTH_3 PF01381.22 gi|284165557|ref|YP_003403836.1| - 0.14 12.2 0.5 1.9 8.6 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix LacI PF00356.21 gi|284165557|ref|YP_003403836.1| - 0.15 11.9 0.4 2.5 8.0 0.0 2.6 3 0 0 3 3 2 0 Bacterial regulatory proteins, lacI family Topo-VIb_trans PF09239.11 gi|284165558|ref|YP_003403837.1| - 7.6e-64 214.3 0.0 1.4e-63 213.5 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|284165558|ref|YP_003403837.1| - 3.7e-40 136.7 4.8 5.1e-40 136.2 2.9 2.3 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|284165558|ref|YP_003403837.1| - 1.8e-14 54.2 1.6 1.2e-13 51.5 0.0 2.7 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|284165558|ref|YP_003403837.1| - 8.1e-13 48.4 0.0 3.4e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284165558|ref|YP_003403837.1| - 0.0035 17.3 0.3 0.065 13.2 0.0 2.7 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain TP6A_N PF04406.14 gi|284165559|ref|YP_003403838.1| - 2.3e-15 56.3 0.1 4e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|284165559|ref|YP_003403838.1| - 0.009 15.8 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Circularly permutated YpsA SLOG family SNARE_assoc PF09335.11 gi|284165560|ref|YP_003403839.1| - 1.3e-12 48.2 5.0 1.3e-12 48.2 5.0 1.7 1 1 0 1 1 1 1 SNARE associated Golgi protein Gram_pos_anchor PF00746.21 gi|284165560|ref|YP_003403839.1| - 0.0012 18.7 1.3 0.0012 18.7 1.3 2.8 3 0 0 3 3 3 1 LPXTG cell wall anchor motif Gram_pos_anchor PF00746.21 gi|284165561|ref|YP_003403840.1| - 0.24 11.4 2.4 0.35 10.9 2.4 1.2 1 0 0 1 1 1 0 LPXTG cell wall anchor motif Lactamase_B_3 PF13483.6 gi|284165562|ref|YP_003403841.1| - 1.9e-34 118.9 0.0 2.7e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284165562|ref|YP_003403841.1| - 4.5e-08 32.8 0.2 6.3e-08 32.4 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FAA_hydrolase PF01557.18 gi|284165563|ref|YP_003403842.1| - 3.3e-65 219.8 0.0 3.9e-65 219.6 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DZR PF12773.7 gi|284165565|ref|YP_003403844.1| - 0.0042 17.1 0.5 0.0058 16.6 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|284165565|ref|YP_003403844.1| - 0.013 16.2 0.5 0.031 15.0 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon family zf-C3HC4_3 PF13920.6 gi|284165565|ref|YP_003403844.1| - 0.072 13.0 1.4 1 9.3 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PAS_4 PF08448.10 gi|284165566|ref|YP_003403845.1| - 1.4e-29 102.5 11.0 1.1e-13 51.3 0.2 3.7 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|284165566|ref|YP_003403845.1| - 1.7e-29 102.6 0.0 6.4e-29 100.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|284165566|ref|YP_003403845.1| - 5.8e-23 81.0 0.1 3.7e-17 62.4 0.0 4.7 4 0 0 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|284165566|ref|YP_003403845.1| - 9.7e-21 74.0 0.4 6.3e-09 36.0 0.0 3.7 3 1 0 3 3 3 3 PAS domain GAF PF01590.26 gi|284165566|ref|YP_003403845.1| - 8.3e-15 55.6 0.2 3.7e-14 53.5 0.1 2.2 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|284165566|ref|YP_003403845.1| - 1.3e-14 54.7 1.7 6.6e-14 52.4 1.7 2.3 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|284165566|ref|YP_003403845.1| - 1.6e-11 44.2 0.4 0.0091 16.0 0.0 4.7 4 1 0 4 4 4 4 PAS fold GAF_3 PF13492.6 gi|284165566|ref|YP_003403845.1| - 1.5e-10 41.6 0.3 3.4e-10 40.4 0.1 1.8 2 0 0 2 2 1 1 GAF domain HisKA PF00512.25 gi|284165566|ref|YP_003403845.1| - 1.8e-08 34.3 2.5 4.8e-08 32.9 0.0 3.0 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|284165566|ref|YP_003403845.1| - 6.5e-07 29.2 1.7 0.0014 18.6 0.0 3.7 4 0 0 4 4 4 2 PAS domain PAS_7 PF12860.7 gi|284165566|ref|YP_003403845.1| - 5.5e-06 26.5 1.3 0.38 10.9 0.1 4.5 4 0 0 4 4 4 2 PAS fold HATPase_c_5 PF14501.6 gi|284165566|ref|YP_003403845.1| - 0.0023 17.8 0.0 0.0061 16.4 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284165566|ref|YP_003403845.1| - 0.019 14.9 0.0 0.019 14.9 0.0 2.5 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain CBS PF00571.28 gi|284165566|ref|YP_003403845.1| - 0.026 15.0 2.2 0.34 11.4 0.1 3.0 2 0 0 2 2 2 0 CBS domain SnoaL_3 PF13474.6 gi|284165566|ref|YP_003403845.1| - 0.11 12.7 0.1 1.1 9.5 0.1 2.8 2 0 0 2 2 2 0 SnoaL-like domain HATPase_c_3 PF13589.6 gi|284165566|ref|YP_003403845.1| - 0.17 11.7 0.0 0.39 10.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TOBE PF03459.17 gi|284165567|ref|YP_003403846.1| - 1.5e-15 57.2 0.2 1.5e-15 57.2 0.2 3.2 4 1 0 4 4 4 1 TOBE domain HTH_1 PF00126.27 gi|284165567|ref|YP_003403846.1| - 3.6e-08 33.2 0.1 7.5e-08 32.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.10 gi|284165567|ref|YP_003403846.1| - 0.048 13.8 1.5 0.14 12.3 0.4 2.2 2 0 0 2 2 2 0 TOBE domain ABC_tran PF00005.27 gi|284165568|ref|YP_003403847.1| - 1.5e-35 122.7 0.0 2.3e-35 122.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165568|ref|YP_003403847.1| - 1.4e-13 51.4 0.0 2.2e-07 31.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284165568|ref|YP_003403847.1| - 4.6e-05 23.9 1.5 0.00016 22.1 1.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|284165568|ref|YP_003403847.1| - 5.2e-05 22.9 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284165568|ref|YP_003403847.1| - 6.4e-05 22.5 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|284165568|ref|YP_003403847.1| - 0.00011 21.8 0.2 0.00026 20.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|284165568|ref|YP_003403847.1| - 0.00028 20.9 0.0 0.00059 19.8 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|284165568|ref|YP_003403847.1| - 0.00041 20.7 0.0 0.00094 19.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain Vhr1 PF04001.13 gi|284165568|ref|YP_003403847.1| - 0.0056 16.9 0.0 0.0097 16.2 0.0 1.3 1 0 0 1 1 1 1 Transcription factor Vhr1 AAA_30 PF13604.6 gi|284165568|ref|YP_003403847.1| - 0.0069 16.1 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|284165568|ref|YP_003403847.1| - 0.0075 16.8 0.0 0.034 14.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|284165568|ref|YP_003403847.1| - 0.0077 16.4 0.1 0.19 12.0 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|284165568|ref|YP_003403847.1| - 0.0087 15.8 0.0 0.025 14.3 0.0 1.5 1 1 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|284165568|ref|YP_003403847.1| - 0.009 16.1 0.0 0.024 14.7 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF2813 PF11398.8 gi|284165568|ref|YP_003403847.1| - 0.011 15.0 0.0 0.03 13.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) AAA_28 PF13521.6 gi|284165568|ref|YP_003403847.1| - 0.013 15.8 0.1 0.056 13.7 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284165568|ref|YP_003403847.1| - 0.02 15.1 0.9 0.11 12.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|284165568|ref|YP_003403847.1| - 0.023 15.2 0.0 0.035 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|284165568|ref|YP_003403847.1| - 0.029 14.1 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|284165568|ref|YP_003403847.1| - 0.035 14.1 0.0 0.16 12.0 0.0 2.0 2 1 1 3 3 3 0 AAA domain NACHT PF05729.12 gi|284165568|ref|YP_003403847.1| - 0.056 13.4 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|284165568|ref|YP_003403847.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|284165568|ref|YP_003403847.1| - 0.15 12.5 0.0 1.5 9.2 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|284165568|ref|YP_003403847.1| - 0.18 10.9 0.0 0.37 10.0 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.15 gi|284165568|ref|YP_003403847.1| - 0.21 11.5 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|284165569|ref|YP_003403848.1| - 2e-11 44.0 11.6 2e-11 44.0 11.6 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|284165570|ref|YP_003403849.1| - 3.4e-28 99.1 0.2 4.5e-28 98.7 0.2 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|284165570|ref|YP_003403849.1| - 9e-07 28.9 0.0 2.4e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|284165570|ref|YP_003403849.1| - 0.024 13.8 0.0 0.06 12.5 0.0 1.6 1 1 0 1 1 1 0 PBP superfamily domain TAT_signal PF10518.9 gi|284165570|ref|YP_003403849.1| - 0.16 11.8 5.6 0.13 12.1 3.0 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence AsnC_trans_reg PF01037.21 gi|284165571|ref|YP_003403850.1| - 2.6e-12 46.5 0.0 4.6e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|284165571|ref|YP_003403850.1| - 3e-10 39.5 0.5 6.4e-10 38.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284165571|ref|YP_003403850.1| - 6.9e-07 29.0 0.5 3.2e-06 26.9 0.1 2.2 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|284165571|ref|YP_003403850.1| - 3.4e-06 26.8 0.1 5.1e-06 26.2 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284165571|ref|YP_003403850.1| - 6.8e-06 25.9 0.1 2.2e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 gi|284165571|ref|YP_003403850.1| - 0.0002 21.0 0.1 0.0013 18.5 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|284165571|ref|YP_003403850.1| - 0.00021 21.3 0.1 0.00038 20.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|284165571|ref|YP_003403850.1| - 0.00024 20.7 0.2 0.00064 19.3 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|284165571|ref|YP_003403850.1| - 0.00074 19.4 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|284165571|ref|YP_003403850.1| - 0.00097 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain E3_UFM1_ligase PF09743.9 gi|284165571|ref|YP_003403850.1| - 0.004 16.8 0.0 0.0066 16.1 0.0 1.3 1 0 0 1 1 1 1 E3 UFM1-protein ligase 1 HTH_38 PF13936.6 gi|284165571|ref|YP_003403850.1| - 0.0077 16.0 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|284165571|ref|YP_003403850.1| - 0.0081 16.6 0.1 0.033 14.6 0.0 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|284165571|ref|YP_003403850.1| - 0.024 14.7 0.0 0.07 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_IclR PF09339.10 gi|284165571|ref|YP_003403850.1| - 0.026 14.3 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284165571|ref|YP_003403850.1| - 0.029 14.6 0.0 0.047 13.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|284165571|ref|YP_003403850.1| - 0.035 14.2 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|284165571|ref|YP_003403850.1| - 0.039 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|284165571|ref|YP_003403850.1| - 0.042 13.7 0.1 0.082 12.8 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mga PF05043.13 gi|284165571|ref|YP_003403850.1| - 0.047 14.3 0.0 0.13 12.9 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|284165571|ref|YP_003403850.1| - 0.05 13.0 0.0 0.089 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR_2 PF12802.7 gi|284165571|ref|YP_003403850.1| - 0.053 13.4 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_50 PF18024.1 gi|284165571|ref|YP_003403850.1| - 0.066 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|284165571|ref|YP_003403850.1| - 0.073 12.6 0.1 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_27 PF13463.6 gi|284165571|ref|YP_003403850.1| - 0.096 13.2 0.1 0.23 12.0 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain GYD PF08734.11 gi|284165571|ref|YP_003403850.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 GYD domain HTH_47 PF16221.5 gi|284165571|ref|YP_003403850.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix HTH_1 PF00126.27 gi|284165571|ref|YP_003403850.1| - 0.15 12.0 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4_2 PF08281.12 gi|284165571|ref|YP_003403850.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|284165571|ref|YP_003403850.1| - 0.19 11.6 0.0 0.34 10.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF3194 PF11419.8 gi|284165572|ref|YP_003403851.1| - 0.022 15.1 0.0 0.028 14.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) DZR PF12773.7 gi|284165574|ref|YP_003403853.1| - 0.00023 21.1 0.5 0.00028 20.9 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284165574|ref|YP_003403853.1| - 0.0004 20.4 2.4 0.033 14.3 0.2 2.1 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284165574|ref|YP_003403853.1| - 0.00091 18.7 1.0 0.0011 18.4 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|284165574|ref|YP_003403853.1| - 0.0012 18.7 6.7 0.041 13.8 0.8 2.1 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zf-RRN7 PF11781.8 gi|284165574|ref|YP_003403853.1| - 0.0016 18.0 7.5 0.002 17.8 7.5 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-HIT PF04438.16 gi|284165574|ref|YP_003403853.1| - 0.0022 17.8 2.1 0.24 11.3 0.1 2.0 2 0 0 2 2 2 1 HIT zinc finger TackOD1 PF18551.1 gi|284165574|ref|YP_003403853.1| - 0.0033 17.1 0.2 0.0033 17.1 0.2 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DUF2318 PF10080.9 gi|284165574|ref|YP_003403853.1| - 0.0039 17.3 0.7 0.0042 17.2 0.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2318) zf_UBZ PF18439.1 gi|284165574|ref|YP_003403853.1| - 0.004 16.7 1.3 0.91 9.2 0.1 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 gi|284165574|ref|YP_003403853.1| - 0.0043 16.9 0.6 0.0052 16.6 0.6 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_11 PF16622.5 gi|284165574|ref|YP_003403853.1| - 0.0047 16.7 3.4 0.17 11.6 0.2 2.1 2 0 0 2 2 2 1 zinc-finger C2H2-type OrfB_Zn_ribbon PF07282.11 gi|284165574|ref|YP_003403853.1| - 0.0061 16.5 1.4 0.0064 16.4 1.4 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain YhfH PF14149.6 gi|284165574|ref|YP_003403853.1| - 0.0074 16.2 1.6 0.48 10.4 2.1 2.1 1 1 1 2 2 2 1 YhfH-like protein HypA PF01155.19 gi|284165574|ref|YP_003403853.1| - 0.0083 16.1 0.7 0.0086 16.1 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin PF00301.20 gi|284165574|ref|YP_003403853.1| - 0.015 15.3 5.4 0.066 13.3 0.5 2.1 1 1 1 2 2 2 0 Rubredoxin Ephrin_rec_like PF07699.13 gi|284165574|ref|YP_003403853.1| - 0.016 14.9 1.3 0.017 14.9 1.3 1.1 1 0 0 1 1 1 0 Putative ephrin-receptor like zf-C2H2 PF00096.26 gi|284165574|ref|YP_003403853.1| - 0.018 15.5 1.3 0.79 10.3 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc-ribbons_6 PF07191.12 gi|284165574|ref|YP_003403853.1| - 0.019 15.0 0.9 0.021 14.8 0.9 1.1 1 0 0 1 1 1 0 zinc-ribbons ADK_lid PF05191.14 gi|284165574|ref|YP_003403853.1| - 0.019 15.0 1.4 3.9 7.5 0.2 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Rubredoxin_2 PF18073.1 gi|284165574|ref|YP_003403853.1| - 0.02 14.6 8.3 0.5 10.1 0.6 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain NCD3G PF07562.14 gi|284165574|ref|YP_003403853.1| - 0.025 14.5 1.2 0.028 14.4 1.2 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR HalOD2 PF18547.1 gi|284165574|ref|YP_003403853.1| - 0.025 14.5 0.9 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 GFA PF04828.14 gi|284165574|ref|YP_003403853.1| - 0.029 14.7 0.1 0.031 14.6 0.1 1.2 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme DNA_RNApol_7kD PF03604.13 gi|284165574|ref|YP_003403853.1| - 0.046 13.4 6.9 0.41 10.4 1.7 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit FYDLN_acid PF09538.10 gi|284165574|ref|YP_003403853.1| - 0.047 14.4 0.2 0.053 14.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) VATC PF18716.1 gi|284165574|ref|YP_003403853.1| - 0.05 13.5 4.5 0.66 9.9 0.9 2.1 1 1 1 2 2 2 0 Vms1-associating treble clef domain DUF983 PF06170.12 gi|284165574|ref|YP_003403853.1| - 0.054 13.9 2.1 2.2 8.7 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-C2H2_4 PF13894.6 gi|284165574|ref|YP_003403853.1| - 0.063 14.1 1.0 3.6 8.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_2 PF13240.6 gi|284165574|ref|YP_003403853.1| - 0.071 12.8 4.4 3.1 7.6 0.2 2.6 1 1 2 3 3 3 0 zinc-ribbon domain NRDD PF13597.6 gi|284165574|ref|YP_003403853.1| - 0.087 11.6 0.8 0.085 11.6 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.18 gi|284165574|ref|YP_003403853.1| - 0.1 12.4 3.3 1.6 8.7 0.3 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|284165574|ref|YP_003403853.1| - 0.21 11.6 5.8 0.55 10.2 5.8 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|284165574|ref|YP_003403853.1| - 0.21 11.3 4.2 4.2 7.2 0.3 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Cas_CXXC_CXXC PF09706.10 gi|284165574|ref|YP_003403853.1| - 1.1 9.6 5.5 2.1 8.6 0.6 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) DUF309 PF03745.14 gi|284165575|ref|YP_003403854.1| - 1.6e-13 50.1 0.1 2.6e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.14 gi|284165576|ref|YP_003403855.1| - 3e-14 52.8 0.1 5.6e-14 51.9 0.1 1.5 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|284165576|ref|YP_003403855.1| - 0.014 14.9 0.0 0.03 13.8 0.0 1.5 2 0 0 2 2 2 0 Carboxypeptidase controlling helical cell shape catalytic Response_reg PF00072.24 gi|284165577|ref|YP_003403856.1| - 2.2e-18 66.5 0.0 2.5e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain GSDH PF07995.11 gi|284165578|ref|YP_003403857.1| - 2.7e-69 234.0 0.0 4.2e-69 233.4 0.0 1.2 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.9 gi|284165578|ref|YP_003403857.1| - 0.13 12.2 1.7 0.3 11.0 1.7 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5122 PF17164.4 gi|284165578|ref|YP_003403857.1| - 0.4 11.0 7.3 53 4.2 0.0 5.2 6 0 0 6 6 6 0 Domain of unknown function (DUF5122) beta-propeller Glutaredoxin PF00462.24 gi|284165579|ref|YP_003403858.1| - 1.3e-16 60.6 0.0 1.3e-15 57.3 0.0 2.1 2 0 0 2 2 2 1 Glutaredoxin SH3BGR PF04908.15 gi|284165579|ref|YP_003403858.1| - 0.088 13.0 0.0 0.37 11.0 0.0 1.9 1 1 0 1 1 1 0 SH3-binding, glutamic acid-rich protein Membralin PF09746.9 gi|284165580|ref|YP_003403859.1| - 0.11 11.5 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Tumour-associated protein CRT10 PF08728.10 gi|284165580|ref|YP_003403859.1| - 0.2 9.8 0.1 0.23 9.6 0.1 1.0 1 0 0 1 1 1 0 CRT10 zinc_ribbon_2 PF13240.6 gi|284165581|ref|YP_003403860.1| - 5.4e-05 22.8 2.4 0.00011 21.8 1.5 1.9 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|284165581|ref|YP_003403860.1| - 0.0002 21.3 2.2 0.00029 20.8 2.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon PHF5 PF03660.14 gi|284165581|ref|YP_003403860.1| - 0.011 15.9 0.2 0.016 15.4 0.2 1.2 1 0 0 1 1 1 0 PHF5-like protein zf-ribbon_3 PF13248.6 gi|284165581|ref|YP_003403860.1| - 0.013 14.9 2.3 0.021 14.2 2.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|284165581|ref|YP_003403860.1| - 0.05 14.3 0.1 0.057 14.2 0.1 1.1 1 0 0 1 1 1 0 zinc-ribbon family zf-C2H2_6 PF13912.6 gi|284165581|ref|YP_003403860.1| - 0.053 13.5 0.9 11 6.2 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RanBP PF00641.18 gi|284165581|ref|YP_003403860.1| - 0.091 12.1 2.8 0.13 11.6 2.8 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others OrfB_Zn_ribbon PF07282.11 gi|284165581|ref|YP_003403860.1| - 0.52 10.3 3.3 1.2 9.1 3.3 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain bPH_3 PF14470.6 gi|284165582|ref|YP_003403861.1| - 0.13 12.7 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain Phage_sheath_1N PF17481.2 gi|284165583|ref|YP_003403862.1| - 0.42 11.1 4.6 0.83 10.2 2.9 2.6 2 1 0 2 2 2 0 Phage tail sheath protein beta-sandwich domain HMG_CoA_synt_N PF01154.17 gi|284165584|ref|YP_003403863.1| - 8.7e-27 94.1 0.0 1.3e-26 93.5 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|284165584|ref|YP_003403863.1| - 2.6e-24 86.3 0.0 4.4e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal MAF_flag10 PF01973.18 gi|284165584|ref|YP_003403863.1| - 0.14 11.9 0.0 0.92 9.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF115 AI-2E_transport PF01594.16 gi|284165585|ref|YP_003403864.1| - 1e-42 146.4 34.0 1.2e-42 146.2 34.0 1.0 1 0 0 1 1 1 1 AI-2E family transporter Rz1 PF06085.11 gi|284165585|ref|YP_003403864.1| - 0.23 11.2 2.5 0.4 10.5 2.5 1.3 1 0 0 1 1 1 0 Lipoprotein Rz1 precursor DUF2270 PF10028.9 gi|284165586|ref|YP_003403865.1| - 6.9e-67 224.6 1.0 8.1e-67 224.4 1.0 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF998 PF06197.13 gi|284165586|ref|YP_003403865.1| - 0.01 15.5 11.6 0.028 14.0 2.1 3.0 2 1 1 3 3 3 2 Protein of unknown function (DUF998) EI24 PF07264.11 gi|284165586|ref|YP_003403865.1| - 0.066 13.5 6.4 0.6 10.3 0.6 2.1 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Polysacc_synt_C PF14667.6 gi|284165586|ref|YP_003403865.1| - 0.1 12.7 5.5 0.17 11.9 0.7 2.1 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF2207 PF09972.9 gi|284165586|ref|YP_003403865.1| - 0.12 11.1 0.2 5.4 5.7 0.1 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Trp_oprn_chp PF09534.10 gi|284165586|ref|YP_003403865.1| - 0.61 9.9 3.5 2.3 8.0 1.7 2.3 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) SLATT_3 PF18184.1 gi|284165586|ref|YP_003403865.1| - 1.4 9.0 3.8 0.55 10.4 0.2 2.1 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 3 GDC-P PF02347.16 gi|284165587|ref|YP_003403866.1| - 6.2e-104 348.2 0.0 7.4e-104 348.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|284165587|ref|YP_003403866.1| - 3.6e-05 22.5 0.0 5.8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|284165588|ref|YP_003403867.1| - 6.5e-10 38.5 0.0 9.4e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|284165588|ref|YP_003403867.1| - 4.1e-05 22.6 0.0 0.00037 19.4 0.0 2.0 1 1 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|284165588|ref|YP_003403867.1| - 0.00019 20.8 0.0 0.00036 19.9 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|284165588|ref|YP_003403867.1| - 0.047 13.0 0.0 0.094 12.0 0.0 1.4 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|284165588|ref|YP_003403867.1| - 0.081 11.4 0.0 0.15 10.6 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|284165588|ref|YP_003403867.1| - 0.18 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II zf-H2C2_2 PF13465.6 gi|284165589|ref|YP_003403868.1| - 7e-05 23.1 3.7 0.0042 17.5 0.7 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zf-ribbon_3 PF13248.6 gi|284165589|ref|YP_003403868.1| - 0.00099 18.4 2.6 0.29 10.6 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|284165589|ref|YP_003403868.1| - 0.0012 18.8 1.1 0.0016 18.3 1.1 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|284165589|ref|YP_003403868.1| - 0.0014 18.8 0.3 0.1 12.9 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon Rubredoxin PF00301.20 gi|284165589|ref|YP_003403868.1| - 0.0016 18.4 2.1 0.9 9.6 0.5 2.2 2 0 0 2 2 2 2 Rubredoxin DUF1610 PF07754.11 gi|284165589|ref|YP_003403868.1| - 0.0022 17.9 3.9 0.3 11.1 0.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-LITAF-like PF10601.9 gi|284165589|ref|YP_003403868.1| - 0.0039 17.4 1.0 0.54 10.5 0.1 2.1 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284165589|ref|YP_003403868.1| - 0.0045 16.5 1.1 0.068 12.7 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding PriA_CRR PF18319.1 gi|284165589|ref|YP_003403868.1| - 0.0058 16.6 0.4 0.58 10.2 0.0 2.7 2 1 1 3 3 3 1 PriA DNA helicase Cys-rich region (CRR) domain DUF983 PF06170.12 gi|284165589|ref|YP_003403868.1| - 0.0071 16.7 0.4 0.33 11.4 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF983) Zn_Tnp_IS1 PF03811.13 gi|284165589|ref|YP_003403868.1| - 0.01 15.5 0.3 3.5 7.4 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C2H2 PF00096.26 gi|284165589|ref|YP_003403868.1| - 0.012 16.0 2.2 0.94 10.1 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_Rg PF17915.1 gi|284165589|ref|YP_003403868.1| - 0.014 14.8 0.2 0.16 11.4 0.0 2.0 2 0 0 2 2 2 0 Reverse gyrase zinc finger Ribosomal_S27e PF01667.17 gi|284165589|ref|YP_003403868.1| - 0.023 14.4 1.5 0.14 11.9 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 Zn_ribbon_SprT PF17283.2 gi|284165589|ref|YP_003403868.1| - 0.025 14.5 3.0 1.8 8.5 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|284165589|ref|YP_003403868.1| - 0.026 14.3 3.0 0.35 10.7 3.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|284165589|ref|YP_003403868.1| - 0.028 14.1 4.7 0.52 10.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF3268 PF11672.8 gi|284165589|ref|YP_003403868.1| - 0.036 14.4 0.2 0.038 14.3 0.2 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain zf-C2H2_3 PF13878.6 gi|284165589|ref|YP_003403868.1| - 0.043 13.6 0.7 1.5 8.7 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF1272 PF06906.11 gi|284165589|ref|YP_003403868.1| - 0.047 13.8 2.5 1.1 9.4 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) TerY_C PF15616.6 gi|284165589|ref|YP_003403868.1| - 0.05 13.7 0.2 0.053 13.6 0.2 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain DUF3797 PF12677.7 gi|284165589|ref|YP_003403868.1| - 0.077 12.9 5.6 0.95 9.4 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3797) HypA PF01155.19 gi|284165589|ref|YP_003403868.1| - 0.08 13.0 0.5 0.1 12.6 0.5 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|284165589|ref|YP_003403868.1| - 0.082 12.9 2.6 0.36 10.8 2.6 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-IS66 PF13005.7 gi|284165589|ref|YP_003403868.1| - 0.1 13.0 2.3 5.1 7.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.6 gi|284165589|ref|YP_003403868.1| - 0.11 12.7 3.7 2.6 8.2 3.9 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CpXC PF14353.6 gi|284165589|ref|YP_003403868.1| - 0.13 12.3 2.9 10 6.2 2.9 2.1 1 1 0 1 1 1 0 CpXC protein DUF4379 PF14311.6 gi|284165589|ref|YP_003403868.1| - 0.14 12.6 0.5 0.14 12.6 0.5 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain UPF0547 PF10571.9 gi|284165589|ref|YP_003403868.1| - 0.14 12.3 6.2 3.4 7.8 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|284165589|ref|YP_003403868.1| - 0.15 12.0 3.3 0.44 10.4 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_ligase_ZBD PF03119.16 gi|284165589|ref|YP_003403868.1| - 0.21 11.7 5.3 4.5 7.4 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|284165589|ref|YP_003403868.1| - 0.24 11.2 0.5 0.24 11.2 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|284165589|ref|YP_003403868.1| - 0.26 12.0 5.9 1.8 9.3 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_10 PF10058.9 gi|284165589|ref|YP_003403868.1| - 0.33 10.7 3.3 6.7 6.5 4.1 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Sgf11 PF08209.11 gi|284165589|ref|YP_003403868.1| - 0.46 10.1 2.5 3.9 7.1 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-NADH-PPase PF09297.11 gi|284165589|ref|YP_003403868.1| - 0.51 10.0 4.3 4.8 6.9 0.9 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.6 gi|284165589|ref|YP_003403868.1| - 0.57 9.8 3.2 1.4 8.6 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.10 gi|284165589|ref|YP_003403868.1| - 0.71 10.0 5.1 3.2 7.9 0.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|284165589|ref|YP_003403868.1| - 0.79 9.7 5.0 3.1 7.8 4.1 2.2 2 1 0 2 2 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|284165589|ref|YP_003403868.1| - 0.9 9.7 5.4 11 6.3 5.9 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cob_adeno_trans PF01923.18 gi|284165590|ref|YP_003403869.1| - 9.5e-58 194.9 0.0 1.1e-57 194.8 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ABATE PF07336.11 gi|284165590|ref|YP_003403869.1| - 0.043 14.5 5.1 0.12 13.1 4.5 1.9 1 1 1 2 2 2 0 Putative stress-induced transcription regulator HTH_20 PF12840.7 gi|284165592|ref|YP_003403871.1| - 0.0053 16.8 1.3 0.014 15.4 1.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HrcA PF01628.21 gi|284165592|ref|YP_003403871.1| - 0.1 12.5 0.1 0.16 11.8 0.1 1.2 1 0 0 1 1 1 0 HrcA protein C terminal domain MaoC_dehydratas PF01575.19 gi|284165594|ref|YP_003403873.1| - 4.1e-20 71.6 0.0 5.3e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284165594|ref|YP_003403873.1| - 7.2e-10 39.1 0.0 1.4e-09 38.1 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase PMSR PF01625.21 gi|284165596|ref|YP_003403875.1| - 4.9e-35 121.0 0.0 7.6e-35 120.3 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase HypA PF01155.19 gi|284165597|ref|YP_003403876.1| - 0.0013 18.7 0.8 0.0013 18.7 0.8 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|284165597|ref|YP_003403876.1| - 0.0014 18.6 0.8 0.0014 18.6 0.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon TFIIS_C PF01096.18 gi|284165597|ref|YP_003403876.1| - 0.013 15.4 1.3 0.7 9.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|284165597|ref|YP_003403876.1| - 0.014 15.2 5.6 0.084 12.8 0.6 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2HC_2 PF13913.6 gi|284165597|ref|YP_003403876.1| - 0.014 15.2 3.9 0.023 14.6 0.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type MCM_OB PF17207.3 gi|284165597|ref|YP_003403876.1| - 0.027 14.3 0.2 0.027 14.3 0.2 1.1 1 0 0 1 1 1 0 MCM OB domain zinc-ribbon_6 PF10005.9 gi|284165597|ref|YP_003403876.1| - 0.028 15.1 1.9 0.031 15.0 1.9 1.1 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284165597|ref|YP_003403876.1| - 0.031 14.4 7.2 0.071 13.2 7.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|284165597|ref|YP_003403876.1| - 0.034 13.9 6.3 0.69 9.7 1.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|284165597|ref|YP_003403876.1| - 0.1 12.0 2.8 4.8 6.7 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-CCHC PF00098.23 gi|284165597|ref|YP_003403876.1| - 0.28 11.3 5.7 2.8 8.2 1.7 2.3 2 0 0 2 2 2 0 Zinc knuckle zf-C2H2 PF00096.26 gi|284165597|ref|YP_003403876.1| - 0.53 10.8 3.1 0.69 10.5 0.3 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF983 PF06170.12 gi|284165597|ref|YP_003403876.1| - 4.7 7.7 4.9 2.4 8.6 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Cortex-I_coil PF09304.10 gi|284165598|ref|YP_003403877.1| - 0.0091 16.2 0.3 0.015 15.5 0.3 1.4 1 0 0 1 1 1 1 Cortexillin I, coiled coil Tropomyosin PF00261.20 gi|284165598|ref|YP_003403877.1| - 0.013 14.9 1.3 0.018 14.4 1.3 1.2 1 0 0 1 1 1 0 Tropomyosin MPS2 PF17060.5 gi|284165598|ref|YP_003403877.1| - 0.016 14.5 0.1 0.02 14.2 0.1 1.1 1 0 0 1 1 1 0 Monopolar spindle protein 2 Myosin_tail_1 PF01576.19 gi|284165598|ref|YP_003403877.1| - 0.022 12.6 0.7 0.026 12.4 0.7 1.0 1 0 0 1 1 1 0 Myosin tail SMC_N PF02463.19 gi|284165598|ref|YP_003403877.1| - 0.058 12.8 0.0 0.092 12.2 0.0 1.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IclR PF01614.18 gi|284165599|ref|YP_003403878.1| - 2.1e-34 118.1 0.0 4.2e-31 107.5 0.0 2.1 2 0 0 2 2 2 2 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284165599|ref|YP_003403878.1| - 9.4e-15 54.2 0.7 3.8e-14 52.2 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284165599|ref|YP_003403878.1| - 1.2e-08 34.4 0.0 1.6e-07 30.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284165599|ref|YP_003403878.1| - 8.1e-07 29.0 0.0 1.7e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284165599|ref|YP_003403878.1| - 3.4e-06 26.8 0.0 6.8e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284165599|ref|YP_003403878.1| - 2.9e-05 23.9 0.1 0.0001 22.1 0.0 1.9 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|284165599|ref|YP_003403878.1| - 0.00026 20.9 0.1 0.0005 19.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|284165599|ref|YP_003403878.1| - 0.003 17.7 0.0 0.0066 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|284165599|ref|YP_003403878.1| - 0.0042 17.4 0.0 0.009 16.4 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|284165599|ref|YP_003403878.1| - 0.0046 16.8 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|284165599|ref|YP_003403878.1| - 0.0052 16.7 0.0 0.02 14.8 0.0 2.0 2 0 0 2 2 2 1 HTH domain Fe_dep_repress PF01325.19 gi|284165599|ref|YP_003403878.1| - 0.0053 16.9 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|284165599|ref|YP_003403878.1| - 0.0085 16.1 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|284165599|ref|YP_003403878.1| - 0.009 15.8 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|284165599|ref|YP_003403878.1| - 0.011 15.6 0.2 0.78 9.6 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF3489 PF11994.8 gi|284165599|ref|YP_003403878.1| - 0.012 15.7 0.1 0.02 14.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) GAF PF01590.26 gi|284165599|ref|YP_003403878.1| - 0.038 14.6 0.0 0.048 14.3 0.0 1.6 1 1 0 1 1 1 0 GAF domain DprA_WH PF17782.1 gi|284165599|ref|YP_003403878.1| - 0.055 13.6 0.1 0.21 11.7 0.0 2.0 2 0 0 2 2 1 0 DprA winged helix domain Autoind_bind PF03472.15 gi|284165599|ref|YP_003403878.1| - 0.057 12.9 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Autoinducer binding domain HTH_40 PF14493.6 gi|284165599|ref|YP_003403878.1| - 0.077 13.5 0.0 0.17 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.16 gi|284165599|ref|YP_003403878.1| - 0.099 12.7 0.0 0.87 9.7 0.0 2.4 3 0 0 3 3 3 0 HemN C-terminal domain HTH_27 PF13463.6 gi|284165599|ref|YP_003403878.1| - 0.1 13.1 0.1 0.18 12.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain BLACT_WH PF17778.1 gi|284165599|ref|YP_003403878.1| - 0.11 12.5 0.0 0.41 10.7 0.0 2.0 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain GerE PF00196.19 gi|284165599|ref|YP_003403878.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_46 PF15977.5 gi|284165599|ref|YP_003403878.1| - 0.22 11.6 0.0 0.5 10.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding Acyl-CoA_dh_1 PF00441.24 gi|284165600|ref|YP_003403879.1| - 1.6e-46 158.3 1.9 2.5e-46 157.6 1.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284165600|ref|YP_003403879.1| - 3e-29 101.1 0.0 4.9e-29 100.4 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284165600|ref|YP_003403879.1| - 1.8e-17 63.9 0.5 2.5e-17 63.4 0.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284165600|ref|YP_003403879.1| - 1.8e-15 57.6 0.0 4.8e-15 56.2 0.0 1.8 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 gi|284165600|ref|YP_003403879.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.5 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal DUF3912 PF13051.6 gi|284165600|ref|YP_003403879.1| - 0.11 12.8 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) Lactamase_B PF00753.27 gi|284165601|ref|YP_003403880.1| - 4.2e-18 66.1 10.1 6.8e-18 65.4 10.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284165601|ref|YP_003403880.1| - 8.9e-10 38.4 3.6 3.8e-09 36.4 2.6 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|284165601|ref|YP_003403880.1| - 0.12 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain 2-Hacid_dh_C PF02826.19 gi|284165602|ref|YP_003403881.1| - 2.2e-56 190.0 0.0 5.1e-56 188.8 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|284165602|ref|YP_003403881.1| - 9.4e-12 44.8 0.0 1.1e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|284165602|ref|YP_003403881.1| - 7.9e-05 23.2 0.0 0.00081 19.9 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|284165602|ref|YP_003403881.1| - 0.00014 22.0 0.0 0.00035 20.7 0.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|284165602|ref|YP_003403881.1| - 0.0045 17.2 0.0 0.0087 16.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|284165602|ref|YP_003403881.1| - 0.07 13.4 0.2 2.7 8.3 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|284165602|ref|YP_003403881.1| - 0.092 12.6 0.4 0.19 11.6 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Oxidored_molyb PF00174.19 gi|284165603|ref|YP_003403882.1| - 4.3e-35 120.9 0.0 6.3e-35 120.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|284165603|ref|YP_003403882.1| - 7.1e-06 26.1 0.4 2.4e-05 24.4 0.4 1.8 2 0 0 2 2 2 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.20 gi|284165603|ref|YP_003403882.1| - 0.31 11.2 1.3 0.99 9.7 1.3 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat SBP_bac_1 PF01547.25 gi|284165604|ref|YP_003403883.1| - 2.9e-13 50.5 2.3 3.9e-13 50.0 2.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284165604|ref|YP_003403883.1| - 0.00098 18.9 1.7 0.002 17.9 1.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|284165605|ref|YP_003403884.1| - 2.1e-20 73.2 17.0 2.1e-20 73.2 17.0 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284165606|ref|YP_003403885.1| - 1.3e-15 57.7 14.7 1.3e-15 57.7 14.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|284165607|ref|YP_003403886.1| - 5e-33 114.5 0.0 9.1e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165607|ref|YP_003403886.1| - 3.7e-06 27.0 0.1 0.11 12.3 0.0 3.0 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284165607|ref|YP_003403886.1| - 0.0016 18.8 0.1 0.0032 17.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|284165607|ref|YP_003403886.1| - 0.006 17.0 0.1 0.021 15.2 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|284165607|ref|YP_003403886.1| - 0.0063 16.8 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain CysA_C_terminal PF17850.1 gi|284165607|ref|YP_003403886.1| - 0.0093 16.5 0.3 0.029 14.9 0.1 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|284165607|ref|YP_003403886.1| - 0.031 13.7 0.0 2.7 7.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|284165607|ref|YP_003403886.1| - 0.032 14.2 0.1 0.054 13.4 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|284165607|ref|YP_003403886.1| - 0.069 12.9 0.6 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|284165607|ref|YP_003403886.1| - 0.093 12.7 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|284165607|ref|YP_003403886.1| - 0.098 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|284165607|ref|YP_003403886.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase PRC PF05239.16 gi|284165607|ref|YP_003403886.1| - 0.11 12.6 0.3 0.25 11.4 0.3 1.7 1 0 0 1 1 1 0 PRC-barrel domain OB_MalK PF17912.1 gi|284165607|ref|YP_003403886.1| - 0.11 13.3 0.1 0.53 11.2 0.0 2.2 3 0 0 3 3 1 0 MalK OB fold domain TOBE_2 PF08402.10 gi|284165607|ref|YP_003403886.1| - 0.12 12.5 0.0 0.36 11.0 0.0 1.9 1 0 0 1 1 1 0 TOBE domain AAA_23 PF13476.6 gi|284165607|ref|YP_003403886.1| - 0.14 12.7 0.4 0.37 11.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284165607|ref|YP_003403886.1| - 0.19 11.5 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RDD PF06271.12 gi|284165608|ref|YP_003403887.1| - 7.2e-15 55.4 0.2 9e-15 55.1 0.2 1.1 1 0 0 1 1 1 1 RDD family Thiolase_C PF02803.18 gi|284165610|ref|YP_003403889.1| - 1e-07 31.6 0.1 6.4e-06 25.8 0.1 2.4 2 0 0 2 2 2 2 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|284165610|ref|YP_003403889.1| - 0.04 13.3 0.6 0.19 11.1 0.6 2.1 1 1 0 1 1 1 0 Thiolase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|284165611|ref|YP_003403890.1| - 2.6e-20 72.2 0.5 2.6e-20 72.2 0.5 1.7 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|284165611|ref|YP_003403890.1| - 4e-11 42.6 2.5 7e-11 41.8 2.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) FdhE PF04216.12 gi|284165611|ref|YP_003403890.1| - 0.025 14.5 0.4 0.036 14.0 0.4 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation TackOD1 PF18551.1 gi|284165611|ref|YP_003403890.1| - 0.075 12.7 0.1 0.1 12.3 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Nudix_N_2 PF14803.6 gi|284165611|ref|YP_003403890.1| - 0.2 11.6 4.6 7 6.7 4.6 2.4 1 1 0 1 1 1 0 Nudix N-terminal MaoC_dehydrat_N PF13452.6 gi|284165612|ref|YP_003403891.1| - 9.9e-35 119.6 1.2 2.1e-27 95.9 0.0 3.1 2 1 0 2 2 2 2 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.19 gi|284165612|ref|YP_003403891.1| - 1.8e-16 59.8 0.2 3.8e-15 55.5 0.1 2.7 3 0 0 3 3 3 1 MaoC like domain 4HBT PF03061.22 gi|284165612|ref|YP_003403891.1| - 0.0042 17.4 0.2 3.5 8.1 0.0 2.6 2 0 0 2 2 2 2 Thioesterase superfamily adh_short_C2 PF13561.6 gi|284165613|ref|YP_003403892.1| - 7.4e-61 205.7 3.8 9.7e-61 205.3 3.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284165613|ref|YP_003403892.1| - 3e-58 196.5 2.3 3.8e-58 196.2 2.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284165613|ref|YP_003403892.1| - 1.6e-13 51.0 0.5 2e-13 50.7 0.5 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284165613|ref|YP_003403892.1| - 9.4e-06 25.3 0.2 2.1e-05 24.1 0.2 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|284165613|ref|YP_003403892.1| - 0.0015 17.7 0.2 0.002 17.3 0.2 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|284165613|ref|YP_003403892.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase THF_DHG_CYH_C PF02882.19 gi|284165613|ref|YP_003403892.1| - 0.005 16.2 0.4 0.01 15.2 0.1 1.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 gi|284165613|ref|YP_003403892.1| - 0.0054 17.0 0.1 0.011 16.0 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|284165613|ref|YP_003403892.1| - 0.012 16.1 0.3 0.032 14.8 0.1 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.17 gi|284165613|ref|YP_003403892.1| - 0.016 14.3 1.2 0.046 12.8 0.3 2.1 2 1 0 2 2 2 0 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284165613|ref|YP_003403892.1| - 0.051 13.5 3.0 0.075 12.9 3.0 1.6 1 1 0 1 1 1 0 NAD(P)H-binding AMP-binding PF00501.28 gi|284165614|ref|YP_003403893.1| - 2.6e-101 339.3 0.0 3.3e-101 338.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284165614|ref|YP_003403893.1| - 3.9e-21 75.8 0.1 3.9e-21 75.8 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.16 gi|284165615|ref|YP_003403894.1| - 3.3e-34 118.4 54.2 1.8e-20 73.2 34.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PTR2 PF00854.21 gi|284165615|ref|YP_003403894.1| - 0.95 8.2 10.9 0.11 11.2 5.7 2.1 2 0 0 2 2 2 0 POT family 3HCDH_N PF02737.18 gi|284165616|ref|YP_003403895.1| - 1.9e-54 184.3 2.4 6.8e-54 182.5 0.5 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|284165616|ref|YP_003403895.1| - 8.2e-12 45.6 0.0 2.4e-11 44.1 0.0 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|284165616|ref|YP_003403895.1| - 3e-05 24.0 0.2 0.00029 20.8 0.2 2.1 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|284165616|ref|YP_003403895.1| - 0.00011 22.4 2.9 0.0011 19.2 0.4 2.4 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_8 PF13450.6 gi|284165616|ref|YP_003403895.1| - 0.00098 19.3 0.7 0.0018 18.5 0.7 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|284165616|ref|YP_003403895.1| - 0.0052 16.4 0.2 0.008 15.8 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|284165616|ref|YP_003403895.1| - 0.007 16.9 1.5 0.014 16.0 0.7 2.1 2 1 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|284165616|ref|YP_003403895.1| - 0.018 15.3 0.3 0.018 15.3 0.3 2.2 2 1 1 3 3 3 0 TrkA-N domain Pyr_redox_2 PF07992.14 gi|284165616|ref|YP_003403895.1| - 0.026 13.7 0.2 0.05 12.8 0.1 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|284165616|ref|YP_003403895.1| - 0.073 12.6 0.3 0.11 12.1 0.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|284165616|ref|YP_003403895.1| - 0.098 13.2 2.5 0.12 12.9 1.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|284165616|ref|YP_003403895.1| - 0.11 13.0 1.0 0.19 12.2 0.7 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding FumaraseC_C PF10415.9 gi|284165616|ref|YP_003403895.1| - 0.13 12.7 3.0 2.6 8.5 0.3 3.0 2 1 1 3 3 3 0 Fumarase C C-terminus FAD_binding_3 PF01494.19 gi|284165616|ref|YP_003403895.1| - 0.16 11.2 0.8 0.26 10.5 0.4 1.5 2 0 0 2 2 2 0 FAD binding domain AdoHcyase_NAD PF00670.21 gi|284165616|ref|YP_003403895.1| - 0.16 12.0 0.7 0.46 10.5 0.2 2.0 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ECH_1 PF00378.20 gi|284165617|ref|YP_003403896.1| - 7.3e-57 192.5 0.0 8.3e-57 192.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284165617|ref|YP_003403896.1| - 2.2e-36 126.1 0.1 1.6e-32 113.3 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Thiolase_N PF00108.23 gi|284165618|ref|YP_003403897.1| - 3.7e-57 193.7 0.0 2.6e-56 190.9 0.0 2.2 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284165618|ref|YP_003403897.1| - 3e-42 143.1 0.1 5e-42 142.4 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|284165618|ref|YP_003403897.1| - 0.0053 16.9 0.1 0.011 15.9 0.1 1.5 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ketoacyl-synt PF00109.26 gi|284165618|ref|YP_003403897.1| - 0.0062 16.1 0.1 0.015 14.9 0.1 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|284165619|ref|YP_003403898.1| - 2.2e-38 131.8 4.6 4.5e-38 130.8 4.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284165619|ref|YP_003403898.1| - 6.6e-20 71.1 0.0 1.7e-19 69.8 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|284165619|ref|YP_003403898.1| - 9.4e-19 68.1 0.6 9.4e-19 68.1 0.6 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284165619|ref|YP_003403898.1| - 2.2e-13 50.6 2.8 4.5e-13 49.6 2.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF4179 PF13786.6 gi|284165620|ref|YP_003403899.1| - 1 9.9 3.3 17 6.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Ni_hydr_CYTB PF01292.20 gi|284165621|ref|YP_003403900.1| - 3.8e-21 75.5 15.0 3.7e-20 72.3 14.2 2.1 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 UL41A PF17591.2 gi|284165621|ref|YP_003403900.1| - 0.001 19.1 0.4 2 8.6 0.0 3.5 4 0 0 4 4 4 2 Herpesvirus UL41A DUF3611 PF12263.8 gi|284165621|ref|YP_003403900.1| - 0.095 12.6 5.7 0.099 12.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3611) CrgA PF06781.12 gi|284165621|ref|YP_003403900.1| - 0.12 12.4 0.0 0.12 12.4 0.0 2.6 2 1 0 2 2 2 0 Cell division protein CrgA DUF2371 PF10177.9 gi|284165621|ref|YP_003403900.1| - 0.56 10.4 3.3 1.1 9.5 0.0 2.6 2 1 0 3 3 3 0 Uncharacterised conserved protein (DUF2371) PepSY_TM PF03929.16 gi|284165621|ref|YP_003403900.1| - 2 8.0 22.3 0.38 10.4 7.2 4.0 3 1 1 5 5 5 0 PepSY-associated TM region DUF805 PF05656.14 gi|284165622|ref|YP_003403901.1| - 0.33 11.4 1.7 0.62 10.5 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Fer4_11 PF13247.6 gi|284165623|ref|YP_003403902.1| - 4.6e-16 58.8 11.8 4.6e-16 58.8 11.8 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284165623|ref|YP_003403902.1| - 6.4e-15 55.5 23.5 2.6e-07 31.1 7.5 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284165623|ref|YP_003403902.1| - 2.2e-12 47.0 24.4 7.9e-06 25.9 7.5 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284165623|ref|YP_003403902.1| - 8.5e-09 34.9 39.5 1.7e-05 24.4 1.0 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284165623|ref|YP_003403902.1| - 7.5e-08 32.1 37.9 0.00048 20.1 0.8 5.4 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284165623|ref|YP_003403902.1| - 7.8e-08 32.3 25.6 1.2e-05 25.3 8.0 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284165623|ref|YP_003403902.1| - 4.7e-07 29.8 29.4 0.00044 20.3 8.2 3.3 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284165623|ref|YP_003403902.1| - 1.1e-06 28.4 32.5 0.0061 16.6 0.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284165623|ref|YP_003403902.1| - 1.9e-05 25.5 22.7 0.024 15.5 1.2 4.6 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|284165623|ref|YP_003403902.1| - 4.5e-05 23.8 22.3 0.00098 19.5 5.5 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284165623|ref|YP_003403902.1| - 0.0011 19.3 32.9 0.047 14.2 2.1 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|284165623|ref|YP_003403902.1| - 0.0079 17.1 41.9 0.058 14.3 5.9 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|284165623|ref|YP_003403902.1| - 0.057 14.0 0.4 0.057 14.0 0.4 4.5 2 1 1 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|284165623|ref|YP_003403902.1| - 0.084 13.4 0.6 0.084 13.4 0.6 4.2 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284165623|ref|YP_003403902.1| - 1.4 9.2 19.7 8.6 6.6 1.6 3.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284165623|ref|YP_003403902.1| - 1.7 9.5 19.6 2.2 9.1 0.6 3.8 2 1 1 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.22 gi|284165624|ref|YP_003403903.1| - 7.5e-48 163.6 0.4 1.7e-47 162.3 0.4 1.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284165624|ref|YP_003403903.1| - 1.8e-15 56.9 0.2 5.7e-15 55.3 0.1 1.9 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|284165624|ref|YP_003403903.1| - 7e-11 42.0 0.1 1.4e-10 41.0 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|284165624|ref|YP_003403903.1| - 0.029 14.2 0.9 0.065 13.1 0.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Rieske_3 PF18465.1 gi|284165624|ref|YP_003403903.1| - 0.032 14.5 1.5 1 9.6 0.1 3.0 2 0 0 2 2 2 0 Rieske 3Fe-4S FlpD PF02662.16 gi|284165625|ref|YP_003403904.1| - 2.1e-25 89.1 0.0 6e-25 87.6 0.0 1.8 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.7 gi|284165625|ref|YP_003403904.1| - 1.4e-14 54.4 37.6 2.9e-07 30.9 11.6 5.9 5 1 1 6 6 6 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284165625|ref|YP_003403904.1| - 2.6e-12 47.5 23.5 0.00035 21.5 0.2 7.1 6 0 0 6 6 6 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|284165625|ref|YP_003403904.1| - 1.6e-11 44.2 43.9 5.1e-07 29.8 10.3 5.3 7 0 0 7 7 5 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284165625|ref|YP_003403904.1| - 2e-11 43.2 55.4 1.3e-05 24.8 2.8 7.8 8 0 0 8 8 7 6 4Fe-4S binding domain Fer4_10 PF13237.6 gi|284165625|ref|YP_003403904.1| - 5.4e-08 32.8 41.5 2.5e-05 24.3 11.5 5.1 4 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284165625|ref|YP_003403904.1| - 1.9e-07 31.1 35.3 0.00017 21.6 7.7 5.4 5 1 1 6 6 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284165625|ref|YP_003403904.1| - 9.4e-07 29.2 25.7 0.0069 16.8 0.4 6.1 6 1 0 6 6 5 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284165625|ref|YP_003403904.1| - 3.3e-05 23.7 2.2 3.3e-05 23.7 2.2 7.8 9 0 0 9 9 6 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284165625|ref|YP_003403904.1| - 0.00043 20.2 3.7 0.00043 20.2 3.7 7.8 9 0 0 9 9 7 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|284165625|ref|YP_003403904.1| - 0.0037 17.8 38.3 0.019 15.5 0.3 6.3 6 1 1 7 7 6 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284165625|ref|YP_003403904.1| - 0.0085 16.5 4.7 0.0085 16.5 4.7 7.4 8 0 0 8 8 7 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|284165625|ref|YP_003403904.1| - 0.023 14.8 18.3 0.096 12.8 1.7 3.7 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284165625|ref|YP_003403904.1| - 1.8 8.8 26.1 21 5.3 0.1 4.7 3 2 0 3 3 3 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.15 gi|284165626|ref|YP_003403905.1| - 2.5e-28 98.8 0.1 3.5e-28 98.3 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit PCRF PF03462.18 gi|284165629|ref|YP_003403908.1| - 0.041 13.7 0.1 0.049 13.5 0.1 1.0 1 0 0 1 1 1 0 PCRF domain ATP1G1_PLM_MAT8 PF02038.16 gi|284165630|ref|YP_003403909.1| - 0.55 9.7 0.1 0.55 9.7 0.1 2.0 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family PAS_3 PF08447.12 gi|284165631|ref|YP_003403910.1| - 5.8e-49 164.3 6.6 2.2e-20 72.7 0.1 6.0 6 0 0 6 6 6 4 PAS fold PAS_4 PF08448.10 gi|284165631|ref|YP_003403910.1| - 2.6e-34 117.8 20.7 9.5e-10 38.7 0.4 4.6 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|284165631|ref|YP_003403910.1| - 2.1e-31 108.3 10.6 3.9e-14 52.6 0.2 5.7 6 0 0 6 6 6 4 PAS fold HATPase_c PF02518.26 gi|284165631|ref|YP_003403910.1| - 8.6e-31 106.8 0.1 6.5e-29 100.7 0.0 2.6 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|284165631|ref|YP_003403910.1| - 7.9e-28 96.8 1.4 7.9e-08 32.5 0.0 4.8 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|284165631|ref|YP_003403910.1| - 5.9e-22 77.2 1.2 5.6e-06 26.3 0.0 4.6 4 0 0 4 4 4 3 PAS domain HisKA PF00512.25 gi|284165631|ref|YP_003403910.1| - 6.1e-11 42.2 1.4 3.1e-10 39.9 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|284165631|ref|YP_003403910.1| - 1.2e-10 41.6 1.3 0.0036 17.4 0.0 4.4 4 0 0 4 4 4 3 PAS fold HATPase_c_5 PF14501.6 gi|284165631|ref|YP_003403910.1| - 0.00019 21.3 0.0 0.00045 20.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284165631|ref|YP_003403910.1| - 0.0002 21.3 0.0 0.00057 19.8 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SnoaL_3 PF13474.6 gi|284165631|ref|YP_003403910.1| - 0.052 13.8 0.5 0.33 11.2 0.2 2.5 2 0 0 2 2 2 0 SnoaL-like domain HATPase_c_3 PF13589.6 gi|284165631|ref|YP_003403910.1| - 0.073 12.9 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CBS PF00571.28 gi|284165631|ref|YP_003403910.1| - 0.57 10.7 2.6 2.4 8.7 0.1 2.7 2 0 0 2 2 2 0 CBS domain AFOR_C PF01314.18 gi|284165633|ref|YP_003403912.1| - 3.9e-94 315.8 0.0 5.2e-94 315.4 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284165633|ref|YP_003403912.1| - 1.3e-63 214.5 0.3 1.8e-63 214.0 0.3 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ADH_N PF08240.12 gi|284165635|ref|YP_003403914.1| - 7.6e-27 93.4 1.3 1.3e-26 92.6 0.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284165635|ref|YP_003403914.1| - 7e-23 81.0 0.4 1e-22 80.5 0.4 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284165635|ref|YP_003403914.1| - 1.3e-05 26.2 0.0 2e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|284165635|ref|YP_003403914.1| - 7.3e-05 22.2 0.4 0.00011 21.6 0.4 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|284165635|ref|YP_003403914.1| - 0.0031 17.0 1.0 0.0049 16.4 1.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ELFV_dehydrog PF00208.21 gi|284165635|ref|YP_003403914.1| - 0.043 13.5 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_25 PF13649.6 gi|284165635|ref|YP_003403914.1| - 0.055 14.2 0.2 0.12 13.1 0.2 1.6 1 0 0 1 1 1 0 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|284165635|ref|YP_003403914.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Prot_ATP_ID_OB PF16450.5 gi|284165635|ref|YP_003403914.1| - 0.13 12.2 0.1 2.2 8.3 0.0 2.3 2 0 0 2 2 2 0 Proteasomal ATPase OB C-terminal domain Urocanase_C PF17392.2 gi|284165635|ref|YP_003403914.1| - 0.37 10.2 4.7 2.3 7.6 0.2 2.3 1 1 1 2 2 2 0 Urocanase C-terminal domain GFO_IDH_MocA PF01408.22 gi|284165636|ref|YP_003403915.1| - 3.2e-27 95.8 0.0 5.3e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|284165636|ref|YP_003403915.1| - 1.1e-05 26.1 0.0 1.8e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 gi|284165636|ref|YP_003403915.1| - 2.1e-05 24.5 0.0 4.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Sacchrp_dh_NADP PF03435.18 gi|284165636|ref|YP_003403915.1| - 0.0013 19.0 0.0 0.0024 18.1 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|284165636|ref|YP_003403915.1| - 0.031 13.9 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|284165636|ref|YP_003403915.1| - 0.077 12.6 0.4 0.28 10.7 0.4 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DnaJ_CXXCXGXG PF00684.19 gi|284165637|ref|YP_003403916.1| - 0.027 14.8 0.4 0.039 14.3 0.4 1.3 1 0 0 1 1 1 0 DnaJ central domain zf-CCHC_2 PF13696.6 gi|284165637|ref|YP_003403916.1| - 0.12 12.2 0.2 0.12 12.2 0.2 1.6 2 0 0 2 2 2 0 Zinc knuckle Lar_restr_allev PF14354.6 gi|284165637|ref|YP_003403916.1| - 0.18 12.2 2.4 1.7 9.1 2.5 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Gas_vesicle PF00741.18 gi|284165638|ref|YP_003403917.1| - 1.5e-13 50.6 7.7 1.9e-13 50.3 7.7 1.1 1 0 0 1 1 1 1 Gas vesicle protein DUF2201_N PF13203.6 gi|284165638|ref|YP_003403917.1| - 0.0012 18.5 1.2 0.0015 18.1 1.2 1.1 1 0 0 1 1 1 1 Putative metallopeptidase domain GvpL_GvpF PF06386.11 gi|284165639|ref|YP_003403918.1| - 2.1e-80 270.2 0.3 2.7e-80 269.8 0.3 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF GvpK PF05121.12 gi|284165640|ref|YP_003403919.1| - 3.5e-24 84.6 6.4 4.3e-24 84.4 6.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein K Jnk-SapK_ap_N PF09744.9 gi|284165640|ref|YP_003403919.1| - 0.00095 19.4 0.9 0.0011 19.2 0.9 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 DLP_helical PF18709.1 gi|284165640|ref|YP_003403919.1| - 0.022 14.0 0.3 0.025 13.8 0.3 1.0 1 0 0 1 1 1 0 Dynamin-like helical domain Glu-tRNAGln PF02686.15 gi|284165640|ref|YP_003403919.1| - 0.027 14.8 0.7 0.044 14.1 0.7 1.4 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit DUF2730 PF10805.8 gi|284165640|ref|YP_003403919.1| - 0.027 14.5 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Rx_N PF18052.1 gi|284165640|ref|YP_003403919.1| - 0.034 14.4 1.3 0.045 14.0 1.3 1.1 1 0 0 1 1 1 0 Rx N-terminal domain Swi5 PF07061.11 gi|284165640|ref|YP_003403919.1| - 0.034 14.2 0.0 0.052 13.6 0.0 1.2 1 0 0 1 1 1 0 Swi5 Csm1_N PF18504.1 gi|284165640|ref|YP_003403919.1| - 0.045 14.1 0.7 0.069 13.5 0.7 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain FlxA PF14282.6 gi|284165640|ref|YP_003403919.1| - 0.057 13.4 0.0 0.072 13.1 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein TetR_C_24 PF17932.1 gi|284165640|ref|YP_003403919.1| - 0.072 13.4 0.5 0.088 13.1 0.5 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain FlaC_arch PF05377.11 gi|284165640|ref|YP_003403919.1| - 0.098 13.1 0.2 0.21 12.0 0.2 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) MobC PF05713.11 gi|284165640|ref|YP_003403919.1| - 0.14 12.7 0.1 0.3 11.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial mobilisation protein (MobC) Gas_vesicle PF00741.18 gi|284165641|ref|YP_003403920.1| - 3.4e-13 49.5 4.5 4.7e-13 49.0 4.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein BUD22 PF09073.10 gi|284165641|ref|YP_003403920.1| - 1.7 7.9 14.0 1.8 7.8 14.0 1.1 1 0 0 1 1 1 0 BUD22 SDA1 PF05285.12 gi|284165641|ref|YP_003403920.1| - 2.6 7.4 14.7 3 7.2 14.7 1.1 1 0 0 1 1 1 0 SDA1 PPP4R2 PF09184.11 gi|284165641|ref|YP_003403920.1| - 3.8 7.0 11.3 5 6.6 11.3 1.1 1 0 0 1 1 1 0 PPP4R2 HSP20 PF00011.21 gi|284165643|ref|YP_003403922.1| - 0.002 18.2 0.0 0.61 10.3 0.0 2.3 1 1 1 2 2 2 2 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|284165643|ref|YP_003403922.1| - 0.011 15.2 0.1 0.071 12.7 0.1 2.1 1 1 0 1 1 1 0 HSP20-like domain found in ArsA GvpG PF05120.12 gi|284165644|ref|YP_003403923.1| - 1.5e-05 24.9 2.4 1.8e-05 24.7 2.4 1.2 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.13 gi|284165644|ref|YP_003403923.1| - 0.0002 21.7 1.1 0.0002 21.6 1.1 1.1 1 0 0 1 1 1 1 Tho complex subunit 7 MASE3 PF17159.4 gi|284165644|ref|YP_003403923.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Membrane-associated sensor domain GvpL_GvpF PF06386.11 gi|284165645|ref|YP_003403924.1| - 4.4e-44 151.3 1.8 4.7e-25 88.9 0.2 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF FliD_C PF07195.12 gi|284165645|ref|YP_003403924.1| - 0.18 11.2 0.0 1.8 7.9 0.0 2.0 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Gas_vesicle PF00741.18 gi|284165646|ref|YP_003403925.1| - 1.5e-16 60.2 6.7 2e-16 59.8 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein AAA_5 PF07728.14 gi|284165647|ref|YP_003403926.1| - 6.2e-16 58.7 0.0 2e-14 53.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|284165647|ref|YP_003403926.1| - 7.2e-06 25.7 1.3 1.9e-05 24.4 0.2 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|284165647|ref|YP_003403926.1| - 1.9e-05 25.1 0.1 0.00011 22.6 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|284165647|ref|YP_003403926.1| - 0.00099 18.9 0.0 0.0018 18.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|284165647|ref|YP_003403926.1| - 0.0026 17.6 0.0 0.0052 16.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284165647|ref|YP_003403926.1| - 0.0049 16.6 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.16 gi|284165647|ref|YP_003403926.1| - 0.0059 16.1 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein AAA_7 PF12775.7 gi|284165647|ref|YP_003403926.1| - 0.006 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|284165647|ref|YP_003403926.1| - 0.0097 15.8 0.0 0.06 13.3 0.0 2.0 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|284165647|ref|YP_003403926.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Sigma54_activ_2 PF14532.6 gi|284165647|ref|YP_003403926.1| - 0.02 15.0 0.0 0.044 13.9 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|284165647|ref|YP_003403926.1| - 0.02 14.2 0.0 0.24 10.6 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin IPT PF01745.16 gi|284165647|ref|YP_003403926.1| - 0.036 13.5 0.0 0.058 12.8 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase AAA_28 PF13521.6 gi|284165647|ref|YP_003403926.1| - 0.081 13.2 0.1 0.42 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|284165647|ref|YP_003403926.1| - 0.086 13.4 0.0 0.15 12.6 0.0 1.7 1 1 0 1 1 1 0 ABC transporter AAA_9 PF12781.7 gi|284165647|ref|YP_003403926.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 ATP-binding dynein motor region GvpO PF05800.11 gi|284165648|ref|YP_003403927.1| - 1.5e-28 98.5 1.5 1.5e-28 98.5 1.5 2.0 2 1 1 3 3 3 1 Gas vesicle synthesis protein GvpO zf-SAP30 PF13866.6 gi|284165648|ref|YP_003403927.1| - 0.12 12.5 0.6 0.23 11.6 0.6 1.4 1 0 0 1 1 1 0 SAP30 zinc-finger zf-CHY PF05495.12 gi|284165649|ref|YP_003403928.1| - 8.6e-12 45.4 11.7 1.3e-11 44.8 11.7 1.4 1 0 0 1 1 1 1 CHY zinc finger HypA PF01155.19 gi|284165649|ref|YP_003403928.1| - 0.048 13.7 0.9 0.048 13.7 0.9 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|284165649|ref|YP_003403928.1| - 8.5 6.6 15.7 2.2 8.4 1.7 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Virul_fac_BrkB PF03631.15 gi|284165650|ref|YP_003403929.1| - 4.6e-31 108.4 22.8 5.7e-31 108.1 22.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB HTH_20 PF12840.7 gi|284165651|ref|YP_003403930.1| - 4.2e-17 62.0 4.0 1.6e-08 34.5 1.9 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|284165651|ref|YP_003403930.1| - 2.9e-15 55.6 0.0 6e-07 28.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284165651|ref|YP_003403930.1| - 4.1e-14 52.2 0.1 5e-08 32.7 0.0 2.7 3 0 0 3 3 2 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284165651|ref|YP_003403930.1| - 1.8e-10 40.4 5.5 0.00014 21.6 0.0 3.2 3 1 1 4 4 4 2 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284165651|ref|YP_003403930.1| - 1e-09 38.1 2.0 6.2e-06 26.0 0.3 2.6 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|284165651|ref|YP_003403930.1| - 1.1e-09 38.1 0.0 2.9e-06 27.1 0.0 2.8 3 0 0 3 3 2 2 MarR family Fe_dep_repress PF01325.19 gi|284165651|ref|YP_003403930.1| - 1.7e-07 31.3 0.0 0.00079 19.6 0.0 2.6 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|284165651|ref|YP_003403930.1| - 6.3e-07 29.2 0.1 0.0075 16.1 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|284165651|ref|YP_003403930.1| - 5.6e-06 26.7 0.0 0.008 16.5 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor RP-C PF03428.13 gi|284165651|ref|YP_003403930.1| - 0.00013 21.6 0.1 0.37 10.4 0.0 2.3 2 0 0 2 2 2 2 Replication protein C N-terminal domain GntR PF00392.21 gi|284165651|ref|YP_003403930.1| - 0.0013 18.4 0.1 0.96 9.1 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|284165651|ref|YP_003403930.1| - 0.0015 18.4 0.2 0.37 10.8 0.0 2.6 2 1 0 2 2 2 1 HTH domain HTH_12 PF08461.10 gi|284165651|ref|YP_003403930.1| - 0.0017 18.2 0.0 1.1 9.2 0.0 2.4 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|284165651|ref|YP_003403930.1| - 0.0047 17.4 0.1 0.074 13.6 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|284165651|ref|YP_003403930.1| - 0.013 15.4 0.1 0.37 10.8 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain BLACT_WH PF17778.1 gi|284165651|ref|YP_003403930.1| - 0.014 15.4 8.1 0.2 11.7 0.1 3.3 3 0 0 3 3 3 0 Beta-lactamase associated winged helix domain DUF2513 PF10711.9 gi|284165651|ref|YP_003403930.1| - 0.019 15.2 0.0 3.1 8.1 0.0 2.4 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_29 PF13551.6 gi|284165651|ref|YP_003403930.1| - 0.024 14.7 0.0 6.9 6.8 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_38 PF13936.6 gi|284165651|ref|YP_003403930.1| - 0.026 14.3 0.0 0.058 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|284165651|ref|YP_003403930.1| - 0.053 13.3 0.1 0.61 9.9 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain MerR_1 PF13411.6 gi|284165651|ref|YP_003403930.1| - 0.072 13.2 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_DeoR PF08220.12 gi|284165651|ref|YP_003403930.1| - 0.082 12.7 0.0 4.9 7.0 0.0 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF2250 PF10007.9 gi|284165651|ref|YP_003403930.1| - 0.096 12.8 0.0 7.6 6.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Cdc6_C PF09079.11 gi|284165651|ref|YP_003403930.1| - 0.11 12.5 0.1 18 5.4 0.0 2.5 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain Mnd1 PF03962.15 gi|284165651|ref|YP_003403930.1| - 0.12 12.7 0.0 19 5.6 0.0 2.5 2 0 0 2 2 2 0 Mnd1 HTH domain B-block_TFIIIC PF04182.12 gi|284165651|ref|YP_003403930.1| - 0.13 12.4 0.0 2.8 8.1 0.0 2.2 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|284165651|ref|YP_003403930.1| - 0.14 12.4 0.0 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain FUR PF01475.19 gi|284165651|ref|YP_003403930.1| - 0.16 12.1 0.0 0.46 10.6 0.0 1.7 2 0 0 2 2 1 0 Ferric uptake regulator family DprA_WH PF17782.1 gi|284165651|ref|YP_003403930.1| - 0.55 10.4 8.0 1 9.5 2.0 3.4 3 0 0 3 3 3 0 DprA winged helix domain DUF948 PF06103.11 gi|284165651|ref|YP_003403930.1| - 6.8 7.0 8.4 38 4.6 5.5 2.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) MutS_V PF00488.21 gi|284165652|ref|YP_003403931.1| - 1.2e-78 263.5 0.2 1.7e-78 263.0 0.2 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|284165652|ref|YP_003403931.1| - 1.1e-40 139.9 1.7 2e-40 139.1 1.7 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|284165652|ref|YP_003403931.1| - 4.7e-36 123.5 0.0 1.1e-35 122.3 0.0 1.7 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|284165652|ref|YP_003403931.1| - 9.3e-31 106.0 0.0 2.5e-30 104.7 0.0 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|284165652|ref|YP_003403931.1| - 2.7e-12 47.1 0.0 2.8e-11 43.8 0.0 2.5 3 0 0 3 3 3 1 MutS domain II AAA_23 PF13476.6 gi|284165652|ref|YP_003403931.1| - 0.0094 16.5 0.0 0.5 10.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|284165652|ref|YP_003403931.1| - 0.017 15.1 0.0 0.054 13.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|284165652|ref|YP_003403931.1| - 0.021 14.6 0.2 0.047 13.4 0.2 1.6 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|284165652|ref|YP_003403931.1| - 0.094 12.3 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284165652|ref|YP_003403931.1| - 0.21 11.4 0.0 0.49 10.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Acetyltransf_1 PF00583.25 gi|284165653|ref|YP_003403932.1| - 3.1e-19 69.3 0.0 3.9e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|284165653|ref|YP_003403932.1| - 7e-12 45.2 0.0 9.5e-12 44.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|284165653|ref|YP_003403932.1| - 3.3e-10 40.3 0.0 5e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284165653|ref|YP_003403932.1| - 2.9e-09 36.9 0.0 6.3e-09 35.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284165653|ref|YP_003403932.1| - 1.3e-07 31.7 0.1 1.4e-06 28.4 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284165653|ref|YP_003403932.1| - 0.012 15.7 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|284165653|ref|YP_003403932.1| - 0.034 14.3 0.0 0.14 12.3 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.6 gi|284165653|ref|YP_003403932.1| - 0.11 11.9 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 HR_lesion PF05514.11 gi|284165654|ref|YP_003403933.1| - 5.8e-07 29.8 0.0 1.4e-05 25.3 0.0 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing DoxX PF07681.12 gi|284165654|ref|YP_003403933.1| - 0.00034 21.1 2.1 0.00072 20.1 1.1 1.8 2 0 0 2 2 2 1 DoxX PBP PF01161.20 gi|284165655|ref|YP_003403934.1| - 8.4e-30 103.8 0.2 9.9e-30 103.6 0.2 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Lactamase_B PF00753.27 gi|284165656|ref|YP_003403935.1| - 3.9e-24 85.8 10.3 5.7e-24 85.2 10.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284165656|ref|YP_003403935.1| - 2e-06 27.4 0.2 3.4e-06 26.7 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|284165656|ref|YP_003403935.1| - 0.038 13.4 0.0 0.052 13.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Terpene_synth_C PF03936.16 gi|284165657|ref|YP_003403936.1| - 0.023 14.1 0.1 2 7.7 0.0 2.1 2 0 0 2 2 2 0 Terpene synthase family, metal binding domain Cys_Met_Meta_PP PF01053.20 gi|284165658|ref|YP_003403937.1| - 1.6e-151 504.2 0.0 1.9e-151 504.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|284165658|ref|YP_003403937.1| - 0.00069 18.7 0.0 0.001 18.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|284165658|ref|YP_003403937.1| - 0.0024 16.5 0.0 0.0037 15.8 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.17 gi|284165658|ref|YP_003403937.1| - 0.046 13.0 0.3 0.24 10.7 0.3 2.0 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family BRK PF07533.16 gi|284165658|ref|YP_003403937.1| - 0.12 12.0 0.0 3.8 7.2 0.0 2.5 2 0 0 2 2 2 0 BRK domain HTH_10 PF04967.12 gi|284165659|ref|YP_003403938.1| - 3e-14 52.6 0.0 5.6e-14 51.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|284165659|ref|YP_003403938.1| - 0.00094 18.7 0.2 0.0025 17.3 0.2 1.8 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|284165659|ref|YP_003403938.1| - 0.0022 17.6 0.1 0.038 13.7 0.1 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284165659|ref|YP_003403938.1| - 0.084 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ribosomal_L21e PF01157.18 gi|284165660|ref|YP_003403939.1| - 1.2e-31 108.5 0.2 1.3e-31 108.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Myosin_N PF02736.19 gi|284165660|ref|YP_003403939.1| - 0.08 12.8 1.2 0.26 11.1 0.5 1.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain RNA_pol_Rpb4 PF03874.16 gi|284165661|ref|YP_003403940.1| - 1.2e-11 45.0 1.2 1.6e-11 44.6 1.2 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|284165662|ref|YP_003403941.1| - 9.7e-63 211.4 0.2 1.1e-62 211.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|284165662|ref|YP_003403941.1| - 0.00038 20.7 0.0 0.00067 19.9 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|284165662|ref|YP_003403941.1| - 0.0013 18.9 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|284165662|ref|YP_003403941.1| - 0.033 14.0 0.0 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|284165662|ref|YP_003403941.1| - 0.16 12.6 1.6 1.2 9.8 0.4 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|284165664|ref|YP_003403943.1| - 1.1e-49 169.0 0.0 1.3e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|284165664|ref|YP_003403943.1| - 6.2e-07 30.0 0.2 7.5e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284165664|ref|YP_003403943.1| - 0.0001 23.0 0.1 0.0037 18.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|284165664|ref|YP_003403943.1| - 0.00033 20.5 0.1 0.0007 19.4 0.0 1.5 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|284165664|ref|YP_003403943.1| - 0.0013 19.3 0.1 0.0047 17.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284165664|ref|YP_003403943.1| - 0.0014 18.4 0.5 0.0095 15.7 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|284165664|ref|YP_003403943.1| - 0.0046 16.5 0.0 0.0078 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 gi|284165664|ref|YP_003403943.1| - 0.01 15.2 0.0 0.016 14.7 0.0 1.2 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Methyltransf_3 PF01596.17 gi|284165664|ref|YP_003403943.1| - 0.059 12.5 0.0 0.092 11.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase GidB PF02527.15 gi|284165664|ref|YP_003403943.1| - 0.16 11.3 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G PSK_trans_fac PF07704.11 gi|284165664|ref|YP_003403943.1| - 4.3 8.2 9.0 3.6 8.4 6.0 2.3 2 0 0 2 2 2 0 Rv0623-like transcription factor MS_channel PF00924.18 gi|284165665|ref|YP_003403944.1| - 6e-49 166.4 0.6 6e-49 166.4 0.6 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Abhydrolase_9_N PF15420.6 gi|284165665|ref|YP_003403944.1| - 0.0063 16.6 6.0 0.0063 16.6 6.0 2.5 2 1 1 3 3 3 1 Alpha/beta-hydrolase family N-terminus PhoR PF11808.8 gi|284165665|ref|YP_003403944.1| - 0.45 11.0 7.0 4.8 7.7 0.1 3.0 3 0 0 3 3 3 0 Phosphate regulon sensor protein PhoR Colicin_V PF02674.16 gi|284165665|ref|YP_003403944.1| - 4.1 7.4 17.5 1.5e+03 -1.0 17.6 3.0 1 1 0 1 1 1 0 Colicin V production protein Methyltransf_11 PF08241.12 gi|284165666|ref|YP_003403945.1| - 5.4e-07 30.2 0.0 5.4e-05 23.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284165666|ref|YP_003403945.1| - 6.6e-07 30.0 0.0 9e-06 26.3 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|284165666|ref|YP_003403945.1| - 6.8e-07 29.0 0.0 5.1e-05 22.9 0.1 2.1 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|284165666|ref|YP_003403945.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284165666|ref|YP_003403945.1| - 0.0031 17.3 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|284165666|ref|YP_003403945.1| - 0.0042 17.1 0.0 0.006 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284165666|ref|YP_003403945.1| - 0.0062 16.3 0.0 0.01 15.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|284165666|ref|YP_003403945.1| - 0.015 14.7 0.6 0.027 13.8 0.6 1.4 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|284165666|ref|YP_003403945.1| - 0.017 15.9 0.0 0.11 13.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Met_10 PF02475.16 gi|284165666|ref|YP_003403945.1| - 0.05 13.3 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Meth_synt_1 PF08267.12 gi|284165667|ref|YP_003403946.1| - 1.1e-12 48.1 0.0 6.5e-12 45.6 0.0 1.9 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|284165667|ref|YP_003403946.1| - 1.3e-10 41.1 0.1 1.9e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.18 gi|284165668|ref|YP_003403947.1| - 2.3e-61 207.8 0.0 3.1e-61 207.4 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|284165668|ref|YP_003403947.1| - 1.1e-13 51.5 0.0 1.6e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|284165668|ref|YP_003403947.1| - 0.00015 21.1 0.1 0.00026 20.2 0.0 1.5 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) YbaB_DNA_bd PF02575.16 gi|284165668|ref|YP_003403947.1| - 0.12 12.6 0.0 0.78 10.0 0.0 2.4 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family Nitroreductase PF00881.24 gi|284165669|ref|YP_003403948.1| - 6.5e-20 71.9 0.3 7e-17 62.0 0.3 2.1 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|284165669|ref|YP_003403948.1| - 3.2e-06 26.9 0.0 0.00017 21.3 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase HalOD1 PF18545.1 gi|284165670|ref|YP_003403949.1| - 0.042 14.1 3.0 0.14 12.4 0.0 3.0 4 0 0 4 4 4 0 Halobacterial output domain 1 Glyco_hydro_3 PF00933.21 gi|284165671|ref|YP_003403950.1| - 4.6e-65 220.1 0.0 5.9e-65 219.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|284165671|ref|YP_003403950.1| - 1.3e-34 120.0 0.0 2.3e-34 119.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|284165671|ref|YP_003403950.1| - 4.5e-14 52.3 0.3 1.2e-13 50.9 0.1 1.9 2 0 0 2 2 2 1 Fibronectin type III-like domain TAT_signal PF10518.9 gi|284165671|ref|YP_003403950.1| - 6e-05 22.7 10.0 0.00015 21.4 10.0 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.22 gi|284165672|ref|YP_003403951.1| - 7.5e-17 62.3 0.0 1.3e-16 61.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284165672|ref|YP_003403951.1| - 1.2e-13 51.1 0.1 3.1e-13 49.7 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|284165672|ref|YP_003403951.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain DUF3866 PF12982.7 gi|284165673|ref|YP_003403952.1| - 0.12 11.5 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3866) ADH_zinc_N_2 PF13602.6 gi|284165674|ref|YP_003403953.1| - 1.1e-24 88.0 0.8 1.8e-24 87.3 0.2 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|284165674|ref|YP_003403953.1| - 4.1e-22 78.5 0.8 8e-22 77.6 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284165674|ref|YP_003403953.1| - 2.2e-05 24.3 0.1 6.4e-05 22.8 0.0 1.8 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|284165674|ref|YP_003403953.1| - 0.0072 16.2 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Creatininase PF02633.14 gi|284165675|ref|YP_003403954.1| - 2.8e-64 216.9 2.6 3.2e-64 216.7 2.6 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Methyltransf_11 PF08241.12 gi|284165676|ref|YP_003403955.1| - 4.4e-26 91.4 0.0 6.5e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284165676|ref|YP_003403955.1| - 1.9e-23 83.0 0.0 3e-23 82.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284165676|ref|YP_003403955.1| - 1.6e-21 76.7 0.0 2.1e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284165676|ref|YP_003403955.1| - 4.1e-17 62.3 0.0 5e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284165676|ref|YP_003403955.1| - 7.2e-17 61.7 0.0 9e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284165676|ref|YP_003403955.1| - 1.9e-11 44.5 0.0 3.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284165676|ref|YP_003403955.1| - 3.5e-05 23.4 0.0 5.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|284165676|ref|YP_003403955.1| - 8e-05 22.1 0.0 9.6e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|284165676|ref|YP_003403955.1| - 0.0013 18.7 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|284165676|ref|YP_003403955.1| - 0.0013 18.4 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|284165676|ref|YP_003403955.1| - 0.0018 17.7 0.0 0.0023 17.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|284165676|ref|YP_003403955.1| - 0.011 15.3 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) DREV PF05219.12 gi|284165676|ref|YP_003403955.1| - 0.012 14.7 0.0 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase TPMT PF05724.11 gi|284165676|ref|YP_003403955.1| - 0.013 15.2 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 gi|284165676|ref|YP_003403955.1| - 0.027 14.2 0.0 0.043 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|284165676|ref|YP_003403955.1| - 0.059 11.9 0.0 0.078 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|284165676|ref|YP_003403955.1| - 0.067 13.0 0.0 0.46 10.3 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.20 gi|284165676|ref|YP_003403955.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|284165676|ref|YP_003403955.1| - 0.077 12.7 0.1 0.54 9.9 0.1 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.18 gi|284165676|ref|YP_003403955.1| - 0.084 12.2 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain AdoMet_MTase PF07757.13 gi|284165676|ref|YP_003403955.1| - 0.09 13.1 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_18 PF12847.7 gi|284165676|ref|YP_003403955.1| - 0.17 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SBP_bac_5 PF00496.22 gi|284165677|ref|YP_003403956.1| - 5.2e-78 262.6 0.0 6.6e-78 262.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.27 gi|284165678|ref|YP_003403957.1| - 6.2e-66 221.1 0.0 5.8e-36 124.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|284165678|ref|YP_003403957.1| - 3.9e-33 113.8 2.9 1.1e-16 61.0 0.2 2.8 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284165678|ref|YP_003403957.1| - 2.7e-15 57.0 0.3 0.00013 21.9 0.0 4.0 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284165678|ref|YP_003403957.1| - 3.4e-09 36.5 0.1 0.00056 19.4 0.0 3.3 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284165678|ref|YP_003403957.1| - 4e-09 36.9 3.8 0.0045 17.3 0.1 4.2 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|284165678|ref|YP_003403957.1| - 8.9e-07 29.4 11.9 0.0026 18.2 1.6 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|284165678|ref|YP_003403957.1| - 2.1e-05 25.0 0.1 0.26 11.7 0.1 3.6 3 1 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|284165678|ref|YP_003403957.1| - 5.1e-05 22.6 0.2 0.31 10.2 0.0 2.7 3 0 0 3 3 3 2 NB-ARC domain NACHT PF05729.12 gi|284165678|ref|YP_003403957.1| - 0.0002 21.3 0.1 0.28 11.1 0.1 2.5 2 0 0 2 2 2 2 NACHT domain AAA_5 PF07728.14 gi|284165678|ref|YP_003403957.1| - 0.00028 20.9 0.9 0.45 10.5 0.1 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|284165678|ref|YP_003403957.1| - 0.00052 19.9 1.1 0.055 13.4 0.0 2.6 3 0 0 3 3 2 1 RsgA GTPase AAA_29 PF13555.6 gi|284165678|ref|YP_003403957.1| - 0.00057 19.6 0.3 0.33 10.7 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|284165678|ref|YP_003403957.1| - 0.00089 18.9 2.3 1.4 8.5 1.0 4.1 3 1 0 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|284165678|ref|YP_003403957.1| - 0.0016 18.8 0.3 1.5 9.3 0.1 2.3 2 0 0 2 2 2 1 RNA helicase Sigma54_activat PF00158.26 gi|284165678|ref|YP_003403957.1| - 0.0016 18.1 0.8 2 8.1 0.0 2.7 3 0 0 3 3 3 2 Sigma-54 interaction domain PRK PF00485.18 gi|284165678|ref|YP_003403957.1| - 0.0031 17.3 0.7 2.3 7.9 0.0 2.2 2 0 0 2 2 2 2 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|284165678|ref|YP_003403957.1| - 0.0046 17.1 1.1 3.5 7.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain CoaE PF01121.20 gi|284165678|ref|YP_003403957.1| - 0.0046 16.6 0.1 1.5 8.4 0.0 2.3 2 0 0 2 2 2 1 Dephospho-CoA kinase MMR_HSR1 PF01926.23 gi|284165678|ref|YP_003403957.1| - 0.0047 17.0 0.1 0.5 10.5 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|284165678|ref|YP_003403957.1| - 0.0061 16.1 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|284165678|ref|YP_003403957.1| - 0.0081 15.8 0.0 3.6 7.2 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|284165678|ref|YP_003403957.1| - 0.0091 15.4 0.1 5.7 6.3 0.0 3.9 4 0 0 4 4 4 0 Bacterial TniB protein Mg_chelatase PF01078.21 gi|284165678|ref|YP_003403957.1| - 0.011 15.1 0.0 0.48 9.8 0.0 2.5 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI DUF3265 PF11665.8 gi|284165678|ref|YP_003403957.1| - 0.012 15.8 3.6 2.6 8.3 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) IstB_IS21 PF01695.17 gi|284165678|ref|YP_003403957.1| - 0.021 14.6 0.6 8.3 6.1 0.0 3.1 4 0 0 4 4 3 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|284165678|ref|YP_003403957.1| - 0.047 13.0 0.3 2.9 7.1 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin DUF87 PF01935.17 gi|284165678|ref|YP_003403957.1| - 0.066 13.3 1.5 11 6.1 0.2 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain Sigma54_activ_2 PF14532.6 gi|284165678|ref|YP_003403957.1| - 0.11 12.6 0.2 11 6.1 0.0 2.8 2 0 0 2 2 2 0 Sigma-54 interaction domain ATPase PF06745.13 gi|284165678|ref|YP_003403957.1| - 0.12 11.7 0.1 18 4.6 0.0 2.4 2 0 0 2 2 2 0 KaiC TsaE PF02367.17 gi|284165678|ref|YP_003403957.1| - 0.17 11.9 0.0 12 5.9 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|284165678|ref|YP_003403957.1| - 0.17 11.6 0.3 11 5.7 0.1 2.2 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|284165678|ref|YP_003403957.1| - 0.2 11.5 0.0 9.3 6.1 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain AIG1 PF04548.16 gi|284165678|ref|YP_003403957.1| - 0.2 10.9 0.3 2.2 7.6 0.0 2.1 2 0 0 2 2 2 0 AIG1 family AAA_18 PF13238.6 gi|284165678|ref|YP_003403957.1| - 3 8.4 5.8 5.7 7.5 0.2 2.9 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|284165679|ref|YP_003403958.1| - 9.6e-32 110.2 7.6 1.6e-31 109.5 7.0 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|284165679|ref|YP_003403958.1| - 4.3e-05 23.4 0.2 0.00018 21.4 0.0 2.1 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|284165680|ref|YP_003403959.1| - 5.6e-43 146.8 10.4 9.6e-43 146.1 10.4 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HD PF01966.22 gi|284165682|ref|YP_003403961.1| - 1.4e-10 41.5 3.5 3.5e-10 40.2 3.5 1.7 1 0 0 1 1 1 1 HD domain Acetyltransf_6 PF13480.7 gi|284165683|ref|YP_003403962.1| - 1.9e-12 47.5 0.8 3.8e-12 46.6 0.8 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB_like PF04339.12 gi|284165683|ref|YP_003403962.1| - 1.8e-08 34.0 0.0 0.00081 18.6 0.0 2.1 2 0 0 2 2 2 2 Peptidogalycan biosysnthesis/recognition FemAB PF02388.16 gi|284165683|ref|YP_003403962.1| - 4.3e-08 32.4 0.4 4e-06 26.0 0.2 2.4 2 1 1 3 3 3 2 FemAB family ADH_zinc_N PF00107.26 gi|284165684|ref|YP_003403963.1| - 3.4e-26 91.8 1.7 3.8e-26 91.6 0.2 1.9 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284165684|ref|YP_003403963.1| - 7.9e-21 74.0 0.2 1.8e-20 72.8 0.2 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|284165684|ref|YP_003403963.1| - 1.7e-17 64.7 0.1 3.3e-17 63.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|284165684|ref|YP_003403963.1| - 0.015 14.6 0.2 0.026 13.8 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NADH_4Fe-4S PF10589.9 gi|284165684|ref|YP_003403963.1| - 0.03 14.4 0.6 0.066 13.3 0.6 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Epimerase PF01370.21 gi|284165685|ref|YP_003403964.1| - 3.5e-16 59.4 0.0 5.1e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|284165685|ref|YP_003403964.1| - 2.4e-08 33.5 0.0 7.2e-08 31.9 0.0 1.7 2 1 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.19 gi|284165685|ref|YP_003403964.1| - 2.2e-07 30.2 0.0 4e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284165685|ref|YP_003403964.1| - 5.5e-07 29.0 0.2 3.1e-05 23.2 0.5 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|284165685|ref|YP_003403964.1| - 1.7e-06 27.3 0.0 4.7e-06 25.9 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284165685|ref|YP_003403964.1| - 4.2e-06 26.8 0.0 1.5e-05 25.0 0.0 1.9 1 1 0 1 1 1 1 NAD(P)H-binding DapB_N PF01113.20 gi|284165685|ref|YP_003403964.1| - 0.0018 18.4 0.0 0.0036 17.4 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GDP_Man_Dehyd PF16363.5 gi|284165685|ref|YP_003403964.1| - 0.06 12.7 0.0 0.28 10.5 0.0 2.1 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase Mit_KHE1 PF10173.9 gi|284165686|ref|YP_003403965.1| - 0.022 14.8 0.3 0.026 14.6 0.3 1.1 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related GST_N_2 PF13409.6 gi|284165687|ref|YP_003403966.1| - 2.2e-22 79.1 0.0 3.9e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|284165687|ref|YP_003403966.1| - 3.9e-12 46.0 0.6 8.7e-12 44.9 0.6 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|284165687|ref|YP_003403966.1| - 3.8e-07 30.2 0.0 8e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|284165687|ref|YP_003403966.1| - 3.1e-05 24.3 0.1 0.00083 19.7 0.1 2.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|284165687|ref|YP_003403966.1| - 6.7e-05 22.6 0.2 0.00012 21.9 0.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|284165687|ref|YP_003403966.1| - 0.00031 20.9 0.1 0.00054 20.1 0.1 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain Na_Ca_ex PF01699.24 gi|284165688|ref|YP_003403967.1| - 1.7e-51 174.2 32.3 2.8e-28 98.8 12.6 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Na_H_antiporter PF03553.14 gi|284165689|ref|YP_003403968.1| - 5.1e-30 104.7 43.6 3.5e-17 62.6 26.0 2.7 2 1 1 3 3 3 2 Na+/H+ antiporter family TRAM PF01938.20 gi|284165690|ref|YP_003403969.1| - 0.0041 17.1 0.2 0.0062 16.5 0.2 1.4 1 0 0 1 1 1 1 TRAM domain NfeD PF01957.18 gi|284165690|ref|YP_003403969.1| - 0.0099 16.2 0.2 0.53 10.7 0.4 2.1 1 1 1 2 2 2 2 NfeD-like C-terminal, partner-binding N6_N4_Mtase PF01555.18 gi|284165691|ref|YP_003403970.1| - 7.4e-14 52.0 0.0 1.9e-08 34.3 0.0 2.1 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|284165691|ref|YP_003403970.1| - 0.031 14.0 0.1 0.87 9.2 0.1 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 TrkA_N PF02254.18 gi|284165692|ref|YP_003403971.1| - 5.1e-26 91.2 1.0 9.6e-26 90.3 0.2 1.8 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|284165692|ref|YP_003403971.1| - 1.2e-13 50.6 1.3 3.3e-13 49.2 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|284165692|ref|YP_003403971.1| - 3.4e-07 30.0 0.0 5.7e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|284165692|ref|YP_003403971.1| - 6e-05 23.0 0.1 9.6e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|284165692|ref|YP_003403971.1| - 9.3e-05 22.8 0.0 0.00017 21.9 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|284165692|ref|YP_003403971.1| - 0.00011 21.8 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sacchrp_dh_NADP PF03435.18 gi|284165692|ref|YP_003403971.1| - 0.00038 20.7 0.1 0.00064 20.0 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|284165692|ref|YP_003403971.1| - 0.00039 19.8 0.0 0.00068 19.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284165692|ref|YP_003403971.1| - 0.00058 20.1 0.1 0.0047 17.1 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|284165692|ref|YP_003403971.1| - 0.00087 19.0 0.0 0.0018 18.0 0.0 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.21 gi|284165692|ref|YP_003403971.1| - 0.0015 18.6 0.1 0.002 18.2 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|284165692|ref|YP_003403971.1| - 0.0034 17.9 0.0 0.0084 16.7 0.0 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|284165692|ref|YP_003403971.1| - 0.0036 17.8 0.0 0.035 14.6 0.0 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain Epimerase PF01370.21 gi|284165692|ref|YP_003403971.1| - 0.0092 15.5 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|284165692|ref|YP_003403971.1| - 0.018 14.6 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family FAD_binding_3 PF01494.19 gi|284165692|ref|YP_003403971.1| - 0.019 14.2 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|284165692|ref|YP_003403971.1| - 0.033 13.5 0.2 0.047 13.0 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Gp_dh_N PF00044.24 gi|284165692|ref|YP_003403971.1| - 0.07 13.5 0.1 0.17 12.2 0.1 1.7 2 0 0 2 2 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|284165692|ref|YP_003403971.1| - 0.081 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase GFO_IDH_MocA PF01408.22 gi|284165692|ref|YP_003403971.1| - 0.12 13.2 0.0 0.2 12.5 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4147 PF13660.6 gi|284165693|ref|YP_003403972.1| - 1.6e-77 260.1 1.5 3.1e-77 259.2 1.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|284165693|ref|YP_003403972.1| - 2.8e-32 111.1 4.2 2.8e-32 111.1 4.2 2.2 2 0 0 2 2 2 1 MOFRL family Xan_ur_permease PF00860.20 gi|284165694|ref|YP_003403973.1| - 1.9e-35 122.3 42.4 2.5e-35 121.9 42.4 1.2 1 0 0 1 1 1 1 Permease family GST_N_3 PF13417.6 gi|284165695|ref|YP_003403974.1| - 1.2e-14 54.4 0.0 1.4e-14 54.3 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|284165695|ref|YP_003403974.1| - 4.3e-14 52.5 0.0 6.5e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|284165695|ref|YP_003403974.1| - 4.9e-09 36.4 0.0 5.6e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|284165695|ref|YP_003403974.1| - 0.0083 16.5 0.0 0.0092 16.4 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|284165695|ref|YP_003403974.1| - 0.01 16.3 0.0 0.011 16.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain GST_N PF02798.20 gi|284165695|ref|YP_003403974.1| - 0.05 13.9 0.0 0.074 13.4 0.0 1.3 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain SLATT_3 PF18184.1 gi|284165696|ref|YP_003403975.1| - 0.29 11.3 2.9 0.32 11.1 2.9 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 HTH_3 PF01381.22 gi|284165697|ref|YP_003403976.1| - 3.3e-08 33.4 0.0 5.6e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|284165697|ref|YP_003403976.1| - 1.9e-05 24.9 2.3 3e-05 24.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284165697|ref|YP_003403976.1| - 0.00035 20.4 0.0 0.00084 19.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_19 PF12844.7 gi|284165697|ref|YP_003403976.1| - 0.0014 18.6 0.0 0.0029 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|284165697|ref|YP_003403976.1| - 0.0021 17.9 0.3 0.0069 16.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284165697|ref|YP_003403976.1| - 0.0047 16.4 0.0 0.012 15.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|284165697|ref|YP_003403976.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AraC PF00165.23 gi|284165697|ref|YP_003403976.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_10 PF04967.12 gi|284165697|ref|YP_003403976.1| - 0.051 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain YdaS_antitoxin PF15943.5 gi|284165697|ref|YP_003403976.1| - 0.086 12.7 0.0 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|284165697|ref|YP_003403976.1| - 0.089 12.6 0.0 0.33 10.8 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Phage_CI_C PF16452.5 gi|284165697|ref|YP_003403976.1| - 0.097 13.0 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor C-terminal domain HTH_38 PF13936.6 gi|284165697|ref|YP_003403976.1| - 0.11 12.3 0.3 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|284165697|ref|YP_003403976.1| - 0.17 12.2 0.0 0.31 11.4 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain DUF1743 PF08489.11 gi|284165698|ref|YP_003403977.1| - 2.1e-37 127.8 0.0 3.6e-37 127.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.11 gi|284165698|ref|YP_003403977.1| - 0.026 14.4 0.8 0.063 13.2 0.8 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|284165698|ref|YP_003403977.1| - 0.029 14.3 0.1 0.053 13.4 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.21 gi|284165698|ref|YP_003403977.1| - 0.033 14.4 0.2 0.06 13.6 0.2 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DUF4131 PF13567.6 gi|284165698|ref|YP_003403977.1| - 0.044 13.4 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Zn-ribbon_8 PF09723.10 gi|284165698|ref|YP_003403977.1| - 0.07 13.3 1.2 12 6.1 0.1 2.8 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|284165698|ref|YP_003403977.1| - 0.081 12.9 0.4 0.17 11.9 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|284165698|ref|YP_003403977.1| - 0.14 12.1 0.8 0.26 11.3 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbons tRNA_anti-codon PF01336.25 gi|284165698|ref|YP_003403977.1| - 0.15 12.0 0.2 0.43 10.6 0.2 1.8 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain zinc_ribbon_6 PF14599.6 gi|284165698|ref|YP_003403977.1| - 0.16 12.0 0.1 0.3 11.1 0.1 1.4 1 0 0 1 1 1 0 Zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|284165698|ref|YP_003403977.1| - 0.2 11.7 2.3 0.58 10.2 2.3 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain SBF PF01758.16 gi|284165699|ref|YP_003403978.1| - 2.3e-30 105.7 10.7 2.3e-30 105.7 10.7 1.7 2 0 0 2 2 2 1 Sodium Bile acid symporter family MMR_HSR1_Xtn PF16897.5 gi|284165701|ref|YP_003403980.1| - 2.5e-30 104.6 1.2 4e-30 103.9 0.5 1.7 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|284165701|ref|YP_003403980.1| - 1.5e-22 79.8 0.0 4e-22 78.5 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|284165701|ref|YP_003403980.1| - 2.6e-14 53.1 1.8 1.5e-10 40.9 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.21 gi|284165701|ref|YP_003403980.1| - 4.3e-13 49.1 0.0 7.6e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|284165701|ref|YP_003403980.1| - 5.7e-06 26.3 3.3 0.14 12.0 0.1 3.6 3 2 1 4 4 4 2 RsgA GTPase Dynamin_N PF00350.23 gi|284165701|ref|YP_003403980.1| - 0.00066 19.8 0.4 0.33 11.0 0.2 2.8 1 1 1 2 2 2 1 Dynamin family AIG1 PF04548.16 gi|284165701|ref|YP_003403980.1| - 0.0031 16.9 0.0 0.0062 15.9 0.0 1.5 1 0 0 1 1 1 1 AIG1 family MeaB PF03308.16 gi|284165701|ref|YP_003403980.1| - 0.0045 16.0 0.4 1.1 8.2 0.0 2.9 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|284165701|ref|YP_003403980.1| - 0.0072 16.9 0.1 0.16 12.5 0.0 2.3 2 0 0 2 2 2 1 ABC transporter GTP_EFTU PF00009.27 gi|284165701|ref|YP_003403980.1| - 0.015 14.8 0.0 0.079 12.5 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain CUE PF02845.16 gi|284165701|ref|YP_003403980.1| - 0.022 14.5 0.1 0.076 12.7 0.1 2.0 2 0 0 2 2 2 0 CUE domain ThiS PF02597.20 gi|284165701|ref|YP_003403980.1| - 0.029 15.0 0.3 0.45 11.2 0.0 2.9 2 1 0 2 2 2 0 ThiS family SLBB PF10531.9 gi|284165701|ref|YP_003403980.1| - 0.1 12.5 0.0 0.47 10.4 0.0 2.0 2 0 0 2 2 2 0 SLBB domain Roc PF08477.13 gi|284165701|ref|YP_003403980.1| - 0.11 12.7 0.1 0.46 10.7 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ABC_tran_CTD PF16326.5 gi|284165701|ref|YP_003403980.1| - 0.32 11.3 5.3 0.18 12.1 2.0 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain MFS_1 PF07690.16 gi|284165702|ref|YP_003403981.1| - 2.7e-36 125.2 47.2 2.7e-36 125.2 47.2 1.7 1 1 1 2 2 2 1 Major Facilitator Superfamily LacY_symp PF01306.19 gi|284165702|ref|YP_003403981.1| - 0.0079 15.0 2.4 0.0079 15.0 2.4 2.2 2 0 0 2 2 2 1 LacY proton/sugar symporter SPDY PF03771.16 gi|284165702|ref|YP_003403981.1| - 0.69 9.9 2.5 0.55 10.2 0.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF317) OATP PF03137.20 gi|284165702|ref|YP_003403981.1| - 2.7 6.2 7.2 2.4 6.4 0.2 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Na_H_antiporter PF03553.14 gi|284165703|ref|YP_003403982.1| - 2.4e-65 220.7 27.6 1.4e-64 218.3 22.5 3.0 1 1 1 2 2 2 1 Na+/H+ antiporter family DUF5316 PF17247.2 gi|284165703|ref|YP_003403982.1| - 0.11 12.5 3.5 9.4 6.3 0.0 3.4 3 0 0 3 3 3 0 Family of unknown function (DUF5316) Glyoxalase PF00903.25 gi|284165704|ref|YP_003403983.1| - 2.1e-21 76.5 2.7 8e-13 48.7 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284165704|ref|YP_003403983.1| - 1e-10 41.9 1.2 0.00035 20.8 0.1 4.1 3 1 1 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284165704|ref|YP_003403983.1| - 9.1e-08 32.9 2.0 0.013 16.2 0.5 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284165704|ref|YP_003403983.1| - 0.0011 19.1 1.1 7.2 6.7 0.1 3.9 2 2 0 2 2 2 2 Glyoxalase-like domain zf-MYND PF01753.18 gi|284165705|ref|YP_003403984.1| - 0.0016 18.5 3.3 0.0045 17.1 3.3 1.7 1 1 0 1 1 1 1 MYND finger VATC PF18716.1 gi|284165705|ref|YP_003403984.1| - 0.0065 16.3 1.0 0.0065 16.3 1.0 1.9 2 0 0 2 2 2 1 Vms1-associating treble clef domain Cdc6_C PF09079.11 gi|284165706|ref|YP_003403985.1| - 7.4e-16 57.9 0.0 1.6e-15 56.8 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|284165706|ref|YP_003403985.1| - 1e-11 45.5 0.8 4.8e-11 43.3 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284165706|ref|YP_003403985.1| - 3.5e-07 30.6 0.0 9.9e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284165706|ref|YP_003403985.1| - 0.00033 21.1 0.0 0.44 11.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284165706|ref|YP_003403985.1| - 0.0019 18.2 0.1 0.0076 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|284165706|ref|YP_003403985.1| - 0.0037 17.0 0.0 0.26 11.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_assoc_2 PF16193.5 gi|284165706|ref|YP_003403985.1| - 0.0081 16.5 0.3 0.027 14.8 0.3 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_2 PF07724.14 gi|284165706|ref|YP_003403985.1| - 0.036 14.2 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) zf-LITAF-like PF10601.9 gi|284165707|ref|YP_003403986.1| - 0.037 14.3 0.6 1.4 9.2 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain MttA_Hcf106 PF02416.16 gi|284165708|ref|YP_003403987.1| - 8.3e-15 53.9 0.1 9.3e-15 53.7 0.1 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family Pyr_redox_2 PF07992.14 gi|284165709|ref|YP_003403988.1| - 4.4e-43 147.6 1.8 5.5e-43 147.3 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284165709|ref|YP_003403988.1| - 1.1e-17 64.2 1.5 2.1e-15 56.8 0.0 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|284165709|ref|YP_003403988.1| - 1.2e-17 63.8 0.1 3.2e-17 62.5 0.1 1.8 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox PF00070.27 gi|284165709|ref|YP_003403988.1| - 8.7e-15 55.0 2.9 2.6e-14 53.5 0.5 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284165709|ref|YP_003403988.1| - 0.00062 18.6 0.7 0.67 8.6 0.1 2.9 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|284165709|ref|YP_003403988.1| - 0.00067 19.3 5.1 0.15 11.6 0.0 3.1 3 1 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284165709|ref|YP_003403988.1| - 0.00071 19.8 0.2 0.011 15.9 0.0 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DUF836 PF05768.14 gi|284165709|ref|YP_003403988.1| - 0.00092 19.6 0.1 0.0025 18.2 0.1 1.7 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NAD_binding_7 PF13241.6 gi|284165709|ref|YP_003403988.1| - 0.0022 18.4 0.4 0.044 14.2 0.1 2.8 3 1 0 3 3 3 1 Putative NAD(P)-binding GST_N_3 PF13417.6 gi|284165709|ref|YP_003403988.1| - 0.0026 18.1 0.0 0.0048 17.3 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain FAD_oxidored PF12831.7 gi|284165709|ref|YP_003403988.1| - 0.0063 15.9 0.2 0.016 14.6 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284165709|ref|YP_003403988.1| - 0.008 15.3 5.7 0.038 13.1 0.0 3.4 2 1 2 4 4 4 1 FAD binding domain SH3BGR PF04908.15 gi|284165709|ref|YP_003403988.1| - 0.047 13.8 0.7 0.09 12.9 0.1 1.8 2 0 0 2 2 2 0 SH3-binding, glutamic acid-rich protein Thioredoxin_3 PF13192.6 gi|284165709|ref|YP_003403988.1| - 0.088 12.9 0.0 1.4 9.1 0.0 2.7 2 0 0 2 2 2 0 Thioredoxin domain Trp_halogenase PF04820.14 gi|284165709|ref|YP_003403988.1| - 0.26 10.1 1.9 15 4.3 0.0 2.7 3 0 0 3 3 3 0 Tryptophan halogenase DUF389 PF04087.14 gi|284165710|ref|YP_003403989.1| - 4.8e-25 88.3 22.7 4.8e-25 88.3 22.7 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF357 PF04010.13 gi|284165711|ref|YP_003403990.1| - 1.1e-31 108.7 0.7 1.3e-31 108.5 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) TFIIB PF00382.19 gi|284165712|ref|YP_003403991.1| - 1.7e-39 133.7 0.2 5.5e-20 71.2 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|284165712|ref|YP_003403991.1| - 4.2e-16 58.2 4.0 8.5e-16 57.2 4.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|284165712|ref|YP_003403991.1| - 8.7e-06 25.8 0.0 0.00019 21.5 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|284165712|ref|YP_003403991.1| - 0.021 14.8 1.1 0.045 13.7 0.9 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain YopD PF05844.12 gi|284165712|ref|YP_003403991.1| - 0.061 12.3 0.2 0.11 11.5 0.2 1.3 1 0 0 1 1 1 0 YopD protein DZR PF12773.7 gi|284165712|ref|YP_003403991.1| - 0.066 13.2 0.8 0.12 12.4 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|284165712|ref|YP_003403991.1| - 0.1 13.0 0.9 0.3 11.5 0.9 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|284165712|ref|YP_003403991.1| - 0.12 11.9 3.3 0.58 9.7 0.0 3.2 4 0 0 4 4 4 0 Sigma-70, region 4 DNA_RNApol_7kD PF03604.13 gi|284165712|ref|YP_003403991.1| - 0.25 11.1 1.1 0.62 9.8 0.1 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|284165712|ref|YP_003403991.1| - 0.34 10.5 2.6 8.4 6.1 0.2 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|284165712|ref|YP_003403991.1| - 0.57 10.3 5.8 3 8.0 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284165712|ref|YP_003403991.1| - 1.2 8.6 3.3 5.8 6.5 3.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|284165713|ref|YP_003403992.1| - 0.00028 20.7 0.1 0.00052 19.9 0.1 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Stc1 PF12898.7 gi|284165713|ref|YP_003403992.1| - 0.0075 16.8 0.2 0.0097 16.4 0.2 1.2 1 0 0 1 1 1 1 Stc1 domain PhnA_Zn_Ribbon PF08274.12 gi|284165713|ref|YP_003403992.1| - 0.0082 16.1 2.1 0.21 11.5 0.3 2.3 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn_Tnp_IS1 PF03811.13 gi|284165713|ref|YP_003403992.1| - 0.0086 15.8 1.1 1.3 8.8 0.3 2.1 2 0 0 2 2 2 2 InsA N-terminal domain HypA PF01155.19 gi|284165713|ref|YP_003403992.1| - 0.027 14.5 0.2 0.028 14.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|284165713|ref|YP_003403992.1| - 0.063 13.3 1.0 0.16 12.0 1.0 1.8 1 1 0 1 1 1 0 zinc-ribbons zf-CHY PF05495.12 gi|284165713|ref|YP_003403992.1| - 0.063 13.8 1.5 0.33 11.5 0.1 1.9 1 1 1 2 2 2 0 CHY zinc finger zf-TFIIB PF13453.6 gi|284165713|ref|YP_003403992.1| - 0.14 11.5 2.1 1.4 8.3 0.2 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.20 gi|284165713|ref|YP_003403992.1| - 0.8 9.8 4.6 0.8 9.8 0.2 2.2 1 1 1 2 2 2 0 Rubredoxin UPF0058 PF01893.16 gi|284165714|ref|YP_003403993.1| - 8.7e-19 67.6 0.0 9.2e-19 67.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 NinB PF05772.12 gi|284165714|ref|YP_003403993.1| - 0.13 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 NinB protein DUF555 PF04475.12 gi|284165715|ref|YP_003403994.1| - 2.5e-37 127.2 0.1 3.3e-37 126.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) HhH-GPD PF00730.25 gi|284165716|ref|YP_003403995.1| - 2.2e-13 50.6 0.0 5.8e-13 49.2 0.0 1.7 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|284165716|ref|YP_003403995.1| - 6.4e-08 32.7 0.0 1e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain DUF3784 PF12650.7 gi|284165717|ref|YP_003403996.1| - 1.1e-09 38.3 0.4 1.4e-09 38.0 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) SLATT_5 PF18160.1 gi|284165717|ref|YP_003403996.1| - 0.04 13.3 0.0 0.052 12.9 0.0 1.1 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF4191 PF13829.6 gi|284165717|ref|YP_003403996.1| - 0.12 11.7 0.7 0.13 11.6 0.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) 7TMR-DISM_7TM PF07695.11 gi|284165718|ref|YP_003403997.1| - 0.0038 17.2 2.8 0.0043 17.0 2.8 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling PrgI PF12666.7 gi|284165718|ref|YP_003403997.1| - 0.038 14.7 0.4 0.047 14.4 0.4 1.1 1 0 0 1 1 1 0 PrgI family protein Chordopox_L2 PF05803.12 gi|284165718|ref|YP_003403997.1| - 0.1 12.4 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Chordopoxvirus L2 protein Acylphosphatase PF00708.18 gi|284165719|ref|YP_003403998.1| - 1.7e-24 86.0 0.0 1.9e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Capsid-VNN PF11729.8 gi|284165721|ref|YP_003404000.1| - 0.16 11.0 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 nodavirus capsid protein Carb_kinase PF01256.17 gi|284165722|ref|YP_003404001.1| - 5.2e-43 147.3 1.6 9.3e-43 146.4 1.6 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|284165722|ref|YP_003404001.1| - 2.7e-40 138.1 0.9 5.6e-40 137.0 0.9 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus Phos_pyr_kin PF08543.12 gi|284165722|ref|YP_003404001.1| - 1.9e-08 34.0 0.1 4.3e-08 32.8 0.1 1.6 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase HK PF02110.15 gi|284165722|ref|YP_003404001.1| - 1.1e-07 31.5 0.0 2.3e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MoaC PF01967.21 gi|284165723|ref|YP_003404002.1| - 3.2e-49 166.5 0.7 3.7e-49 166.3 0.7 1.0 1 0 0 1 1 1 1 MoaC family NMO PF03060.15 gi|284165724|ref|YP_003404003.1| - 5.8e-65 219.9 3.5 3.9e-63 213.9 3.5 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|284165724|ref|YP_003404003.1| - 5.3e-12 45.4 4.3 1.7e-11 43.8 4.3 1.7 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|284165724|ref|YP_003404003.1| - 6e-10 38.7 7.4 6e-10 38.7 7.4 1.8 2 1 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|284165724|ref|YP_003404003.1| - 0.0051 16.3 0.4 0.011 15.2 0.4 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|284165724|ref|YP_003404003.1| - 0.15 11.2 3.5 0.33 10.0 3.5 1.6 1 1 0 1 1 1 0 Conserved region in glutamate synthase PLDc_N PF13396.6 gi|284165725|ref|YP_003404004.1| - 0.0055 16.6 1.1 0.0055 16.6 1.1 3.1 2 1 1 3 3 3 1 Phospholipase_D-nuclease N-terminal PrgI PF12666.7 gi|284165725|ref|YP_003404004.1| - 0.38 11.5 0.2 0.38 11.5 0.2 2.1 2 1 0 2 2 2 0 PrgI family protein TPPK_C PF12555.8 gi|284165725|ref|YP_003404004.1| - 3.3 7.8 6.7 13 5.9 1.5 2.6 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal adh_short_C2 PF13561.6 gi|284165726|ref|YP_003404005.1| - 1.3e-64 218.0 2.6 1.5e-64 217.8 2.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284165726|ref|YP_003404005.1| - 3.5e-57 193.0 0.5 4.1e-57 192.8 0.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284165726|ref|YP_003404005.1| - 2.3e-20 73.3 0.5 3e-20 72.9 0.5 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284165726|ref|YP_003404005.1| - 0.00038 20.0 0.4 0.00056 19.4 0.1 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Abhydrolase_1 PF00561.20 gi|284165727|ref|YP_003404006.1| - 2.3e-21 76.6 0.0 5e-21 75.5 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|284165727|ref|YP_003404006.1| - 8.6e-14 51.6 0.0 1.4e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.6 gi|284165727|ref|YP_003404006.1| - 1.7e-11 44.6 0.1 4.5e-11 43.2 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain Hydrolase_4 PF12146.8 gi|284165727|ref|YP_003404006.1| - 9.1e-08 31.7 0.0 0.0004 19.7 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PHB_depo_C PF06850.11 gi|284165727|ref|YP_003404006.1| - 4.5e-06 26.3 0.6 1.6e-05 24.5 0.0 1.9 2 0 0 2 2 2 1 PHB de-polymerase C-terminus DUF3141 PF11339.8 gi|284165727|ref|YP_003404006.1| - 2.4e-05 23.0 0.0 8.7e-05 21.2 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.18 gi|284165727|ref|YP_003404006.1| - 0.00029 20.5 0.0 0.031 13.8 0.0 2.6 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF4332 PF14229.6 gi|284165727|ref|YP_003404006.1| - 0.00059 20.1 0.2 0.0074 16.5 0.1 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|284165727|ref|YP_003404006.1| - 0.016 15.5 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus HTH_28 PF13518.6 gi|284165727|ref|YP_003404006.1| - 0.017 15.2 0.0 0.04 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|284165727|ref|YP_003404006.1| - 0.03 14.1 0.0 0.06 13.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DNA_pol_lambd_f PF10391.9 gi|284165727|ref|YP_003404006.1| - 0.065 13.1 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HTH_Tnp_ISL3 PF13542.6 gi|284165727|ref|YP_003404006.1| - 0.18 11.2 0.0 0.42 10.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PHA_synth_III_E PF09712.10 gi|284165728|ref|YP_003404007.1| - 8.5e-08 31.6 13.5 4.4e-07 29.3 2.0 2.1 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) FliD_C PF07195.12 gi|284165728|ref|YP_003404007.1| - 0.0012 18.3 0.6 0.0074 15.7 0.6 1.9 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus 5_nucleotid_C PF02872.18 gi|284165728|ref|YP_003404007.1| - 0.0059 16.8 0.2 0.012 15.8 0.1 1.6 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Terpene_synth_C PF03936.16 gi|284165728|ref|YP_003404007.1| - 0.016 14.6 2.2 0.017 14.5 2.2 1.1 1 0 0 1 1 1 0 Terpene synthase family, metal binding domain XFP PF03894.15 gi|284165728|ref|YP_003404007.1| - 0.02 14.6 1.5 0.025 14.3 0.5 1.6 2 0 0 2 2 2 0 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Hs1pro-1_C PF07014.12 gi|284165728|ref|YP_003404007.1| - 0.067 12.7 0.8 0.15 11.5 0.5 1.7 1 1 0 1 1 1 0 Hs1pro-1 protein C-terminus Mating_N PF12731.7 gi|284165728|ref|YP_003404007.1| - 0.13 12.4 2.8 0.19 11.8 0.4 2.4 2 2 1 3 3 3 0 Mating-type protein beta 1 DUF4168 PF13767.6 gi|284165728|ref|YP_003404007.1| - 0.16 13.2 6.8 0.23 12.7 1.5 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4168) QIL1 PF15884.5 gi|284165728|ref|YP_003404007.1| - 0.2 12.3 1.8 9.2 6.9 0.1 2.5 1 1 1 2 2 2 0 MICOS complex subunit MIC13, QIL1 Mt_ATP-synt_D PF05873.12 gi|284165728|ref|YP_003404007.1| - 0.21 11.4 3.8 0.28 11.0 1.3 2.4 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Phasin PF05597.11 gi|284165728|ref|YP_003404007.1| - 0.45 10.5 7.3 1.2 9.1 5.3 2.6 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF948 PF06103.11 gi|284165728|ref|YP_003404007.1| - 0.59 10.4 8.0 22 5.4 0.3 3.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF29 PF01724.16 gi|284165728|ref|YP_003404007.1| - 0.73 10.1 7.4 0.16 12.2 1.3 2.6 1 1 2 3 3 3 0 Domain of unknown function DUF29 FdhE PF04216.12 gi|284165728|ref|YP_003404007.1| - 1.9 8.3 5.5 4.1 7.2 0.9 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation DUF745 PF05335.13 gi|284165728|ref|YP_003404007.1| - 2.3 7.9 7.8 0.35 10.6 1.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF5344 PF17279.2 gi|284165728|ref|YP_003404007.1| - 3.3 8.3 9.7 2.4 8.8 0.3 3.5 4 0 0 4 4 4 0 Family of unknown function (DUF5344) YkyA PF10368.9 gi|284165729|ref|YP_003404008.1| - 0.0048 16.6 8.6 0.023 14.4 8.6 2.1 1 1 0 1 1 1 1 Putative cell-wall binding lipoprotein MHB PF16525.5 gi|284165729|ref|YP_003404008.1| - 0.0077 16.5 2.2 0.065 13.5 0.5 2.6 1 1 0 2 2 2 1 Haemophore, haem-binding DUF5344 PF17279.2 gi|284165729|ref|YP_003404008.1| - 0.016 15.8 3.3 0.085 13.4 1.7 2.7 2 2 0 2 2 2 0 Family of unknown function (DUF5344) DUF1664 PF07889.12 gi|284165729|ref|YP_003404008.1| - 0.034 14.2 0.7 0.1 12.6 0.3 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) SufE PF02657.15 gi|284165729|ref|YP_003404008.1| - 0.068 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Fe-S metabolism associated domain DUF4795 PF16043.5 gi|284165729|ref|YP_003404008.1| - 0.11 12.1 0.9 0.17 11.4 0.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Apolipoprotein PF01442.18 gi|284165729|ref|YP_003404008.1| - 0.15 12.0 11.5 0.59 10.0 11.6 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.10 gi|284165729|ref|YP_003404008.1| - 0.23 11.8 19.9 1.4 9.2 1.2 2.9 1 1 2 3 3 3 0 Phasin protein ADH_zinc_N_2 PF13602.6 gi|284165729|ref|YP_003404008.1| - 0.24 12.5 2.4 0.41 11.7 0.3 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase ThylakoidFormat PF11264.8 gi|284165729|ref|YP_003404008.1| - 0.34 10.6 4.7 0.39 10.4 1.3 2.3 1 1 0 2 2 2 0 Thylakoid formation protein CAP_N PF01213.19 gi|284165729|ref|YP_003404008.1| - 0.89 9.0 7.8 1.8 8.0 7.9 1.7 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Fes1 PF08609.10 gi|284165729|ref|YP_003404008.1| - 1.4 9.8 7.1 3 8.8 0.1 2.7 1 1 1 2 2 2 0 Nucleotide exchange factor Fes1 DUF883 PF05957.13 gi|284165729|ref|YP_003404008.1| - 2.8 8.6 7.8 2 9.0 0.7 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Repressor_Mnt PF11423.8 gi|284165730|ref|YP_003404009.1| - 0.049 13.4 0.1 0.087 12.6 0.1 1.5 1 0 0 1 1 1 0 Regulatory protein Mnt MazE_antitoxin PF04014.18 gi|284165730|ref|YP_003404009.1| - 0.075 13.0 0.5 0.12 12.4 0.5 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MaoC_dehydratas PF01575.19 gi|284165731|ref|YP_003404010.1| - 9e-22 76.9 0.0 1.5e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284165731|ref|YP_003404010.1| - 1.3e-07 31.8 0.0 2.7e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase PGM_PMM_I PF02878.16 gi|284165732|ref|YP_003404011.1| - 3.1e-32 111.2 0.1 9.7e-32 109.6 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|284165732|ref|YP_003404011.1| - 3.8e-16 59.6 1.2 1.1e-14 54.9 1.2 2.6 1 1 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|284165732|ref|YP_003404011.1| - 1.3e-12 47.7 0.0 6e-12 45.6 0.0 2.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|284165732|ref|YP_003404011.1| - 0.00027 21.1 0.0 0.00093 19.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dCMP_cyt_deam_1 PF00383.23 gi|284165733|ref|YP_003404012.1| - 4.2e-17 61.9 0.1 5.1e-17 61.6 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|284165733|ref|YP_003404012.1| - 6e-11 42.7 0.2 7.8e-11 42.3 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region MafB19-deam PF14437.6 gi|284165733|ref|YP_003404012.1| - 0.049 13.4 0.2 0.082 12.7 0.2 1.4 1 1 0 1 1 1 0 MafB19-like deaminase Pentapeptide PF00805.22 gi|284165733|ref|YP_003404012.1| - 0.05 13.3 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Pentapeptide repeats (8 copies) Fer2_4 PF13510.6 gi|284165733|ref|YP_003404012.1| - 0.073 13.1 0.4 0.14 12.2 0.4 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DUF389 PF04087.14 gi|284165734|ref|YP_003404013.1| - 1.1e-34 119.5 18.5 1.1e-34 119.5 18.5 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF389) FA_desaturase PF00487.24 gi|284165734|ref|YP_003404013.1| - 2.2 8.0 4.4 6.2 6.6 4.0 2.0 2 1 0 2 2 2 0 Fatty acid desaturase DUF488 PF04343.13 gi|284165735|ref|YP_003404014.1| - 8.4e-10 39.3 4.2 5.2e-09 36.8 4.1 2.1 1 1 0 1 1 1 1 Protein of unknown function, DUF488 DUF4326 PF14216.6 gi|284165735|ref|YP_003404014.1| - 0.0092 16.7 0.9 0.013 16.2 0.9 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4326) PNP_UDP_1 PF01048.20 gi|284165736|ref|YP_003404015.1| - 4.3e-48 163.6 3.0 5.4e-48 163.3 3.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DAO_C PF16901.5 gi|284165736|ref|YP_003404015.1| - 0.031 14.2 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase MS_channel PF00924.18 gi|284165737|ref|YP_003404016.1| - 7.6e-17 61.5 3.4 7.6e-17 61.5 3.4 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|284165737|ref|YP_003404016.1| - 9.2e-09 35.1 2.4 1.1e-07 31.7 0.5 3.5 3 1 0 3 3 3 2 Conserved TM helix DisA_N PF02457.16 gi|284165738|ref|YP_003404017.1| - 7.5e-21 73.9 0.0 1.2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|284165738|ref|YP_003404017.1| - 0.15 12.3 0.0 1 9.6 0.0 2.5 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain DUF5613 PF18467.1 gi|284165740|ref|YP_003404019.1| - 0.21 12.0 0.0 0.22 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5613) TFIIB PF00382.19 gi|284165741|ref|YP_003404020.1| - 9.2e-07 28.8 0.1 1.9e-06 27.8 0.1 1.5 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|284165741|ref|YP_003404020.1| - 0.0039 16.7 0.1 0.92 9.1 0.0 2.2 2 0 0 2 2 2 2 Sigma-70, region 4 CTP_transf_like PF01467.26 gi|284165742|ref|YP_003404021.1| - 2.7e-13 50.3 0.0 3.4e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|284165742|ref|YP_003404021.1| - 0.0022 17.9 0.0 0.021 14.7 0.0 2.1 2 0 0 2 2 2 1 FAD synthetase DUF5024 PF16427.5 gi|284165742|ref|YP_003404021.1| - 0.15 12.4 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5024) PTA_PTB PF01515.19 gi|284165743|ref|YP_003404022.1| - 5.2e-93 311.8 0.0 7.1e-93 311.4 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|284165743|ref|YP_003404022.1| - 1.6e-30 106.2 0.1 2.8e-28 99.0 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|284165743|ref|YP_003404022.1| - 4.6e-20 72.0 0.5 1.2e-19 70.6 0.5 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain HTH_31 PF13560.6 gi|284165743|ref|YP_003404022.1| - 0.054 13.9 0.0 0.17 12.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Pectate_lyase_3 PF12708.7 gi|284165744|ref|YP_003404023.1| - 4.3e-16 59.4 0.4 1.8e-13 50.9 0.0 2.4 1 1 0 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|284165744|ref|YP_003404023.1| - 1.1e-09 38.3 9.3 1.8e-05 24.7 3.4 2.2 1 1 1 2 2 2 2 Right handed beta helix region PQQ_3 PF13570.6 gi|284165745|ref|YP_003404024.1| - 1.1e-43 146.7 34.9 6.6e-09 36.0 0.5 8.4 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|284165745|ref|YP_003404024.1| - 2.4e-32 112.5 10.6 2.1e-16 60.2 2.4 2.3 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|284165745|ref|YP_003404024.1| - 6.6e-31 104.8 17.5 5.1e-09 35.6 0.3 7.3 7 1 0 7 7 7 4 PQQ enzyme repeat TAT_signal PF10518.9 gi|284165745|ref|YP_003404024.1| - 0.00025 20.8 4.5 0.00058 19.6 4.5 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PD40 PF07676.12 gi|284165745|ref|YP_003404024.1| - 0.27 11.2 2.8 1.5 8.8 0.0 2.9 2 0 0 2 2 2 0 WD40-like Beta Propeller Repeat CytB6-F_Fe-S PF08802.10 gi|284165745|ref|YP_003404024.1| - 1.8 8.6 4.6 0.55 10.3 0.2 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Ribosomal_S8e PF01201.22 gi|284165746|ref|YP_003404025.1| - 1.3e-32 112.8 4.2 1.6e-32 112.6 4.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Aldo_ket_red PF00248.21 gi|284165747|ref|YP_003404026.1| - 6.7e-82 275.0 0.0 8.2e-82 274.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PhoU PF01895.19 gi|284165748|ref|YP_003404027.1| - 3.2e-20 72.4 9.5 1.1e-16 61.1 1.2 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|284165748|ref|YP_003404027.1| - 1.2e-09 37.8 0.0 4.3e-09 36.1 0.0 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ABC_tran PF00005.27 gi|284165749|ref|YP_003404028.1| - 1.6e-28 99.9 0.0 2.5e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165749|ref|YP_003404028.1| - 2.6e-11 43.9 0.1 0.00019 21.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284165749|ref|YP_003404028.1| - 2.1e-09 37.1 0.3 2.6e-08 33.6 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|284165749|ref|YP_003404028.1| - 4.7e-05 23.3 0.0 0.00086 19.1 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284165749|ref|YP_003404028.1| - 5.9e-05 23.4 0.0 0.0002 21.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284165749|ref|YP_003404028.1| - 0.00051 19.7 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284165749|ref|YP_003404028.1| - 0.0011 18.9 0.0 0.0024 17.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|284165749|ref|YP_003404028.1| - 0.0017 18.0 0.0 0.014 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284165749|ref|YP_003404028.1| - 0.0034 17.8 0.4 0.016 15.6 0.4 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|284165749|ref|YP_003404028.1| - 0.0041 17.3 0.0 0.0091 16.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_23 PF13476.6 gi|284165749|ref|YP_003404028.1| - 0.0052 17.3 0.6 0.014 15.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|284165749|ref|YP_003404028.1| - 0.007 16.1 0.0 0.34 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|284165749|ref|YP_003404028.1| - 0.0081 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain Shigella_OspC PF06128.11 gi|284165749|ref|YP_003404028.1| - 0.011 15.5 0.1 0.016 15.0 0.1 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein AAA_18 PF13238.6 gi|284165749|ref|YP_003404028.1| - 0.013 16.1 0.0 0.03 14.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain DeoRC PF00455.22 gi|284165749|ref|YP_003404028.1| - 0.021 14.7 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain PRK PF00485.18 gi|284165749|ref|YP_003404028.1| - 0.047 13.4 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|284165749|ref|YP_003404028.1| - 0.047 14.1 0.0 0.85 10.0 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|284165749|ref|YP_003404028.1| - 0.049 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|284165749|ref|YP_003404028.1| - 0.054 12.7 0.0 0.097 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.6 gi|284165749|ref|YP_003404028.1| - 0.058 13.1 0.0 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|284165749|ref|YP_003404028.1| - 0.072 12.7 0.0 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|284165749|ref|YP_003404028.1| - 0.082 13.3 0.0 0.24 11.8 0.0 1.8 2 0 0 2 2 1 0 RNA helicase G-alpha PF00503.20 gi|284165749|ref|YP_003404028.1| - 0.084 12.0 0.0 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit ABC_ATPase PF09818.9 gi|284165749|ref|YP_003404028.1| - 0.085 11.6 0.1 3.7 6.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class KdpD PF02702.17 gi|284165749|ref|YP_003404028.1| - 0.11 12.0 0.2 0.16 11.4 0.2 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_5 PF07728.14 gi|284165749|ref|YP_003404028.1| - 0.13 12.3 0.1 0.59 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|284165749|ref|YP_003404028.1| - 0.14 12.0 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea PBP_like PF12727.7 gi|284165750|ref|YP_003404029.1| - 5.9e-25 87.5 0.0 1.1e-24 86.7 0.0 1.4 2 0 0 2 2 2 1 PBP superfamily domain PBP_like_2 PF12849.7 gi|284165750|ref|YP_003404029.1| - 4.2e-24 85.7 0.8 1.5e-23 83.8 0.8 1.7 1 1 0 1 1 1 1 PBP superfamily domain Eno-Rase_NADH_b PF12242.8 gi|284165750|ref|YP_003404029.1| - 0.037 13.8 0.3 0.069 12.9 0.3 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase SBP_bac_11 PF13531.6 gi|284165750|ref|YP_003404029.1| - 0.078 12.7 0.0 0.4 10.4 0.0 2.1 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|284165751|ref|YP_003404030.1| - 1.7e-16 60.5 15.8 1.7e-16 60.5 15.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PNTB_4TM PF12769.7 gi|284165751|ref|YP_003404030.1| - 0.017 15.6 0.9 0.017 15.6 0.9 2.8 2 1 1 3 3 3 0 4TM region of pyridine nucleotide transhydrogenase, mitoch BPD_transp_1 PF00528.22 gi|284165752|ref|YP_003404031.1| - 1e-21 77.5 20.1 1e-21 77.5 20.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component GTA_holin_3TM PF11351.8 gi|284165752|ref|YP_003404031.1| - 0.75 10.3 4.5 24 5.5 1.7 3.1 1 1 1 2 2 2 0 Holin of 3TMs, for gene-transfer release ABC_tran PF00005.27 gi|284165753|ref|YP_003404032.1| - 2.2e-28 99.5 0.0 3.4e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165753|ref|YP_003404032.1| - 4.5e-11 43.1 0.1 0.00017 21.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284165753|ref|YP_003404032.1| - 2.3e-09 37.0 0.2 3.6e-08 33.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|284165753|ref|YP_003404032.1| - 4.3e-05 23.4 0.0 0.00082 19.2 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284165753|ref|YP_003404032.1| - 4.8e-05 23.7 0.0 0.00014 22.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284165753|ref|YP_003404032.1| - 0.00039 20.4 0.0 0.0008 19.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|284165753|ref|YP_003404032.1| - 0.00051 19.7 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284165753|ref|YP_003404032.1| - 0.0034 17.9 0.1 0.0099 16.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|284165753|ref|YP_003404032.1| - 0.0034 17.3 0.0 0.0052 16.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|284165753|ref|YP_003404032.1| - 0.0036 17.7 0.4 0.021 15.2 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|284165753|ref|YP_003404032.1| - 0.0039 16.8 0.1 0.031 13.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|284165753|ref|YP_003404032.1| - 0.004 17.3 0.0 0.0095 16.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|284165753|ref|YP_003404032.1| - 0.0062 16.3 0.1 0.29 10.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|284165753|ref|YP_003404032.1| - 0.014 15.9 0.0 0.04 14.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain Shigella_OspC PF06128.11 gi|284165753|ref|YP_003404032.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein DeoRC PF00455.22 gi|284165753|ref|YP_003404032.1| - 0.022 14.7 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain NB-ARC PF00931.22 gi|284165753|ref|YP_003404032.1| - 0.043 13.0 0.0 0.076 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|284165753|ref|YP_003404032.1| - 0.05 14.0 0.0 0.9 10.0 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|284165753|ref|YP_003404032.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PRK PF00485.18 gi|284165753|ref|YP_003404032.1| - 0.056 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_24 PF13479.6 gi|284165753|ref|YP_003404032.1| - 0.06 13.1 0.0 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|284165753|ref|YP_003404032.1| - 0.068 12.0 0.0 2.9 6.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|284165753|ref|YP_003404032.1| - 0.076 12.6 0.0 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.20 gi|284165753|ref|YP_003404032.1| - 0.087 12.0 0.0 0.16 11.1 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit RNA_helicase PF00910.22 gi|284165753|ref|YP_003404032.1| - 0.091 13.2 0.0 0.25 11.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.14 gi|284165753|ref|YP_003404032.1| - 0.11 12.6 0.1 0.6 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) KdpD PF02702.17 gi|284165753|ref|YP_003404032.1| - 0.11 12.0 0.2 0.17 11.4 0.2 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ATPase_2 PF01637.18 gi|284165753|ref|YP_003404032.1| - 0.14 12.0 0.0 1.3 8.9 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Adeno_IVa2 PF02456.15 gi|284165753|ref|YP_003404032.1| - 0.2 10.4 0.0 1.7 7.4 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein YdjM PF04307.14 gi|284165754|ref|YP_003404033.1| - 3e-16 59.2 8.3 3.7e-16 58.9 8.3 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PhoU PF01895.19 gi|284165755|ref|YP_003404034.1| - 1.8e-38 130.8 15.0 1.9e-21 76.3 2.2 2.2 2 0 0 2 2 2 2 PhoU domain Bactofilin PF04519.13 gi|284165756|ref|YP_003404035.1| - 1.1e-11 44.8 8.5 5.9e-09 36.1 0.4 3.4 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|284165756|ref|YP_003404035.1| - 3.7e-07 29.6 12.7 0.0073 16.0 0.0 6.2 7 0 0 7 7 7 3 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.8 gi|284165756|ref|YP_003404035.1| - 0.00064 19.4 0.3 0.1 12.2 0.0 2.9 1 1 2 3 3 3 3 Protein of unknown function (DUF3494) Hexapep_2 PF14602.6 gi|284165756|ref|YP_003404035.1| - 0.0024 17.6 9.1 0.2 11.5 0.1 5.4 5 1 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase SurA_N_2 PF13623.6 gi|284165757|ref|YP_003404036.1| - 0.073 12.9 0.0 0.094 12.6 0.0 1.1 1 0 0 1 1 1 0 SurA N-terminal domain Ferredoxin_N PF16947.5 gi|284165758|ref|YP_003404037.1| - 3.2e-34 116.9 7.4 3.2e-34 116.9 7.4 2.3 2 0 0 2 2 2 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|284165758|ref|YP_003404037.1| - 3.7e-15 56.3 21.7 9.8e-09 35.7 5.5 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|284165758|ref|YP_003404037.1| - 6.9e-11 42.2 3.8 6.9e-11 42.2 3.8 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284165758|ref|YP_003404037.1| - 4e-10 39.7 20.0 1.1e-06 28.6 4.0 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284165758|ref|YP_003404037.1| - 6.3e-09 35.9 21.5 6.2e-06 26.3 3.4 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284165758|ref|YP_003404037.1| - 8.3e-05 23.1 17.6 0.014 15.9 0.8 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284165758|ref|YP_003404037.1| - 9.2e-05 22.1 35.6 0.00072 19.3 3.5 5.2 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284165758|ref|YP_003404037.1| - 0.00026 20.9 33.4 0.008 16.2 2.8 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284165758|ref|YP_003404037.1| - 0.0026 17.7 1.7 0.0026 17.7 1.7 5.1 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284165758|ref|YP_003404037.1| - 0.025 15.0 26.7 1.2 9.7 8.3 3.9 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|284165758|ref|YP_003404037.1| - 0.047 14.7 39.9 0.71 11.0 5.1 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284165758|ref|YP_003404037.1| - 0.22 12.5 26.1 0.44 11.5 0.9 4.5 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|284165758|ref|YP_003404037.1| - 8.2 6.2 11.3 0.5 10.2 0.8 2.8 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SdpI PF13630.6 gi|284165759|ref|YP_003404038.1| - 0.12 12.5 2.9 0.14 12.3 2.9 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family HMGL-like PF00682.19 gi|284165760|ref|YP_003404039.1| - 2.5e-67 227.2 3.6 2.5e-67 227.2 3.6 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|284165760|ref|YP_003404039.1| - 2e-30 105.4 2.9 4.9e-30 104.2 2.9 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF2620 PF10941.8 gi|284165760|ref|YP_003404039.1| - 0.1 12.8 0.3 0.3 11.2 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF2620 Pribosyltran PF00156.27 gi|284165761|ref|YP_003404040.1| - 7.1e-20 71.1 0.9 9.8e-20 70.7 0.9 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|284165761|ref|YP_003404040.1| - 0.0087 15.5 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|284165761|ref|YP_003404040.1| - 0.043 13.3 0.0 0.052 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF192 PF02643.15 gi|284165762|ref|YP_003404041.1| - 4.1e-19 68.5 0.0 4.7e-19 68.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 TAT_signal PF10518.9 gi|284165763|ref|YP_003404042.1| - 0.048 13.5 3.9 0.08 12.8 3.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence RecA_dep_nuc PF16786.5 gi|284165764|ref|YP_003404043.1| - 0.05 13.7 0.1 0.075 13.2 0.1 1.4 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease HNH PF01844.23 gi|284165764|ref|YP_003404043.1| - 0.054 13.7 2.9 0.098 12.8 2.9 1.4 1 0 0 1 1 1 0 HNH endonuclease C1_1 PF00130.22 gi|284165764|ref|YP_003404043.1| - 0.059 13.3 0.4 0.059 13.3 0.4 2.0 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PEPcase PF00311.17 gi|284165765|ref|YP_003404044.1| - 7.4e-241 801.5 0.0 1.3e-240 800.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|284165765|ref|YP_003404044.1| - 0.0014 17.2 0.0 0.0024 16.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Glycos_transf_2 PF00535.26 gi|284165766|ref|YP_003404045.1| - 1.6e-18 67.1 0.1 8.9e-18 64.7 0.1 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284165766|ref|YP_003404045.1| - 0.001 19.0 0.1 0.029 14.3 0.1 2.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|284165766|ref|YP_003404045.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF354 PF04007.12 gi|284165767|ref|YP_003404046.1| - 1.2e-12 47.6 0.0 1.2e-08 34.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|284165767|ref|YP_003404046.1| - 6.3e-06 26.3 0.0 1e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|284165767|ref|YP_003404046.1| - 0.00033 21.1 4.9 0.00091 19.7 1.2 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|284165767|ref|YP_003404046.1| - 0.0012 18.8 1.6 0.0023 17.9 0.3 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 HTH_Tnp_1 PF01527.20 gi|284165767|ref|YP_003404046.1| - 0.067 13.5 0.1 0.18 12.2 0.1 1.7 1 0 0 1 1 1 0 Transposase Glyco_transf_28 PF03033.20 gi|284165767|ref|YP_003404046.1| - 0.07 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain DUF2334 PF10096.9 gi|284165768|ref|YP_003404047.1| - 0.0088 15.7 0.1 0.078 12.6 0.0 2.4 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2334) Polysacc_lyase PF14099.6 gi|284165769|ref|YP_003404048.1| - 0.00013 21.9 3.4 0.00026 20.9 3.4 1.5 1 1 0 1 1 1 1 Polysaccharide lyase TAT_signal PF10518.9 gi|284165770|ref|YP_003404049.1| - 0.018 14.9 4.4 0.039 13.8 4.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_6 PF13480.7 gi|284165771|ref|YP_003404050.1| - 1.7e-14 54.1 0.3 2.9e-14 53.4 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|284165771|ref|YP_003404050.1| - 0.00031 19.7 0.0 0.045 12.6 0.0 2.3 2 0 0 2 2 2 2 FemAB family Acetyltransf_6 PF13480.7 gi|284165772|ref|YP_003404051.1| - 6.1e-17 62.1 0.1 1.2e-16 61.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB_like PF04339.12 gi|284165772|ref|YP_003404051.1| - 1.4e-08 34.3 0.1 0.00019 20.7 0.0 2.3 2 0 0 2 2 2 2 Peptidogalycan biosysnthesis/recognition FemAB PF02388.16 gi|284165772|ref|YP_003404051.1| - 1.1e-05 24.5 0.1 0.00025 20.0 0.1 2.0 2 0 0 2 2 2 1 FemAB family Polysacc_lyase PF14099.6 gi|284165773|ref|YP_003404052.1| - 0.00085 19.2 0.4 0.0016 18.3 0.1 1.7 2 0 0 2 2 2 1 Polysaccharide lyase DUF1080 PF06439.11 gi|284165773|ref|YP_003404052.1| - 0.057 13.5 0.0 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1080) Polysacc_synt_3 PF13440.6 gi|284165775|ref|YP_003404054.1| - 1.5e-23 83.5 3.3 1.5e-23 83.5 3.3 2.5 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|284165775|ref|YP_003404054.1| - 3.4e-22 79.1 10.7 3.4e-22 79.1 10.7 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|284165775|ref|YP_003404054.1| - 1.1e-15 57.9 14.0 1.1e-15 57.9 14.0 3.4 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|284165775|ref|YP_003404054.1| - 1.1e-06 28.4 1.6 1.1e-06 28.4 1.6 3.9 3 2 0 3 3 3 2 MatE MurJ PF03023.14 gi|284165775|ref|YP_003404054.1| - 0.074 11.6 20.8 0.23 10.0 19.2 2.8 1 1 0 1 1 1 0 Lipid II flippase MurJ TPR_7 PF13176.6 gi|284165775|ref|YP_003404054.1| - 0.16 12.1 0.0 2.4 8.4 0.0 2.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Acetyltransf_1 PF00583.25 gi|284165776|ref|YP_003404055.1| - 0.05 13.8 0.0 0.074 13.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family bZIP_2 PF07716.15 gi|284165778|ref|YP_003404057.1| - 0.014 15.5 0.1 0.023 14.8 0.1 1.3 1 0 0 1 1 1 0 Basic region leucine zipper bZIP_1 PF00170.21 gi|284165778|ref|YP_003404057.1| - 0.065 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 bZIP transcription factor DUF1616 PF07760.11 gi|284165779|ref|YP_003404058.1| - 4.5e-78 262.6 0.5 5.3e-78 262.4 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Glyco_hydro2_C5 PF18565.1 gi|284165779|ref|YP_003404058.1| - 0.007 16.2 1.4 0.016 15.0 1.4 1.6 1 0 0 1 1 1 1 Glycoside hydrolase family 2 C-terminal domain 5 DUF2371 PF10177.9 gi|284165779|ref|YP_003404058.1| - 0.037 14.2 0.8 0.094 12.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF3522 PF12036.8 gi|284165779|ref|YP_003404058.1| - 0.082 13.2 0.4 0.082 13.2 0.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3522) CPBP PF02517.16 gi|284165779|ref|YP_003404058.1| - 0.65 10.4 5.0 2.3 8.7 5.2 1.8 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease DUF3357 PF11837.8 gi|284165779|ref|YP_003404058.1| - 1.3 9.5 6.4 6.5 7.3 0.3 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF3357) HisKA PF00512.25 gi|284165780|ref|YP_003404059.1| - 4.9e-14 52.1 1.1 4.9e-14 52.1 1.1 2.1 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|284165780|ref|YP_003404059.1| - 2.4e-12 47.3 0.0 5.6e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.25 gi|284165780|ref|YP_003404059.1| - 6.9e-10 39.2 1.6 2.1e-09 37.6 1.6 1.9 1 0 0 1 1 1 1 HAMP domain dCache_1 PF02743.18 gi|284165780|ref|YP_003404059.1| - 1.2e-09 38.4 0.0 2.5e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Cache domain HATPase_c_2 PF13581.6 gi|284165780|ref|YP_003404059.1| - 0.00073 19.5 0.1 0.0019 18.1 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PepSY_TM PF03929.16 gi|284165780|ref|YP_003404059.1| - 0.071 12.8 0.6 0.41 10.3 0.0 2.2 2 0 0 2 2 2 0 PepSY-associated TM region 4HB_MCP_1 PF12729.7 gi|284165780|ref|YP_003404059.1| - 0.46 10.0 3.9 2.2 7.8 0.2 2.8 3 0 0 3 3 3 0 Four helix bundle sensory module for signal transduction Cellulase PF00150.18 gi|284165781|ref|YP_003404060.1| - 8.1e-22 78.0 0.0 1.3e-21 77.2 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) CBM9_1 PF06452.11 gi|284165781|ref|YP_003404060.1| - 4e-18 66.0 0.8 7e-18 65.2 0.8 1.4 1 0 0 1 1 1 1 Carbohydrate family 9 binding domain-like fn3 PF00041.21 gi|284165781|ref|YP_003404060.1| - 7e-11 42.3 0.1 1.8e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 Fibronectin type III domain Pur_ac_phosph_N PF16656.5 gi|284165781|ref|YP_003404060.1| - 0.009 16.6 0.0 0.18 12.4 0.0 2.9 1 1 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain DUF4959 PF16323.5 gi|284165781|ref|YP_003404060.1| - 0.15 12.4 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4959) LEA_2 PF03168.13 gi|284165782|ref|YP_003404061.1| - 4e-10 40.1 0.3 9.3e-08 32.5 0.1 2.7 2 1 0 2 2 2 2 Late embryogenesis abundant protein DUF4307 PF14155.6 gi|284165782|ref|YP_003404061.1| - 0.009 15.8 0.6 0.031 14.1 0.6 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4307) HTH_IclR PF09339.10 gi|284165783|ref|YP_003404062.1| - 0.00015 21.5 0.0 0.00032 20.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284165783|ref|YP_003404062.1| - 0.0013 18.3 0.0 0.0027 17.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284165783|ref|YP_003404062.1| - 0.0056 16.5 0.0 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 MarR family DUF4381 PF14316.6 gi|284165783|ref|YP_003404062.1| - 0.018 15.3 0.0 0.056 13.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) HTH_5 PF01022.20 gi|284165783|ref|YP_003404062.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Lactamase_B PF00753.27 gi|284165784|ref|YP_003404063.1| - 6.3e-22 78.5 8.7 8.9e-20 71.5 8.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284165784|ref|YP_003404063.1| - 1.3e-06 28.1 1.7 2.1e-06 27.4 1.7 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|284165784|ref|YP_003404063.1| - 0.013 15.4 0.1 0.02 14.8 0.1 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|284165784|ref|YP_003404063.1| - 0.026 13.9 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain ABC_tran PF00005.27 gi|284165785|ref|YP_003404064.1| - 2.7e-34 118.6 0.0 4.2e-34 118.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284165785|ref|YP_003404064.1| - 7.1e-11 42.5 0.1 5.7e-06 26.4 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284165785|ref|YP_003404064.1| - 0.00012 22.4 0.7 0.00073 19.8 0.7 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284165785|ref|YP_003404064.1| - 0.00019 20.9 0.0 0.07 12.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|284165785|ref|YP_003404064.1| - 0.00055 20.4 0.2 0.017 15.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TOBE_2 PF08402.10 gi|284165785|ref|YP_003404064.1| - 0.0014 18.8 5.8 0.003 17.7 0.1 3.4 3 1 1 4 4 3 1 TOBE domain AAA_16 PF13191.6 gi|284165785|ref|YP_003404064.1| - 0.0021 18.5 1.5 0.0065 16.9 1.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|284165785|ref|YP_003404064.1| - 0.0037 17.0 0.1 0.01 15.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|284165785|ref|YP_003404064.1| - 0.011 16.2 0.1 0.025 15.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|284165785|ref|YP_003404064.1| - 0.02 15.1 0.1 0.061 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|284165785|ref|YP_003404064.1| - 0.024 14.6 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|284165785|ref|YP_003404064.1| - 0.026 14.1 0.5 0.15 11.6 0.5 2.1 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|284165785|ref|YP_003404064.1| - 0.039 13.4 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|284165785|ref|YP_003404064.1| - 0.056 13.2 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|284165785|ref|YP_003404064.1| - 0.099 13.2 0.0 0.59 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284165785|ref|YP_003404064.1| - 0.22 11.2 0.0 0.41 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|284165785|ref|YP_003404064.1| - 0.31 11.2 2.5 0.62 10.2 0.5 2.4 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|284165786|ref|YP_003404065.1| - 7.9e-28 97.4 39.6 7.3e-16 58.4 14.5 2.9 3 0 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|284165787|ref|YP_003404066.1| - 7.1e-23 81.3 0.0 9.8e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|284165787|ref|YP_003404066.1| - 5.7e-16 59.2 0.1 6.8e-16 58.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284165787|ref|YP_003404066.1| - 0.00033 20.7 1.4 0.00045 20.3 1.4 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|284165787|ref|YP_003404066.1| - 0.0039 16.9 0.0 0.0059 16.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PRT_C PF08372.10 gi|284165787|ref|YP_003404066.1| - 0.14 11.9 0.1 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal HisKA_7TM PF16927.5 gi|284165790|ref|YP_003404069.1| - 2.2e-47 161.9 15.7 2.9e-47 161.5 15.7 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|284165790|ref|YP_003404069.1| - 4.8e-14 52.1 2.1 5e-14 52.1 0.6 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|284165790|ref|YP_003404069.1| - 1.8e-11 44.5 0.0 3.5e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|284165790|ref|YP_003404069.1| - 1e-10 41.9 0.8 3e-10 40.3 0.8 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|284165790|ref|YP_003404069.1| - 1.2e-06 28.3 1.1 4.4e-06 26.6 0.1 2.5 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|284165790|ref|YP_003404069.1| - 4.2e-06 27.0 0.0 7.8e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|284165790|ref|YP_003404069.1| - 4.7e-06 26.6 0.1 1.2e-05 25.3 0.1 1.7 1 1 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|284165790|ref|YP_003404069.1| - 0.0072 16.5 0.1 0.24 11.6 0.1 2.4 1 1 0 1 1 1 1 PAS fold SPOB_a PF14689.6 gi|284165790|ref|YP_003404069.1| - 0.017 14.8 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|284165790|ref|YP_003404069.1| - 0.024 14.6 0.1 0.049 13.6 0.1 1.4 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain NYD-SP28 PF14772.6 gi|284165790|ref|YP_003404069.1| - 0.15 12.1 0.9 0.25 11.4 0.9 1.2 1 0 0 1 1 1 0 Sperm tail Lig_C PF18330.1 gi|284165791|ref|YP_003404070.1| - 2.8e-44 150.1 0.0 4.8e-44 149.4 0.0 1.4 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|284165791|ref|YP_003404070.1| - 1.3e-13 51.6 0.0 2.2e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 RNA ligase PIN_5 PF08745.11 gi|284165792|ref|YP_003404071.1| - 7.8e-77 257.4 0.0 8.9e-77 257.2 0.0 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease Sod_Fe_N PF00081.22 gi|284165793|ref|YP_003404072.1| - 1.8e-29 102.0 0.7 3.7e-29 101.0 0.7 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|284165793|ref|YP_003404072.1| - 2.7e-28 98.1 0.0 3.9e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain NDK PF00334.19 gi|284165795|ref|YP_003404074.1| - 1.5e-52 177.2 0.0 1.7e-52 177.0 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|284165796|ref|YP_003404075.1| - 8.3e-22 77.2 0.0 1e-21 76.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e Astro_capsid_p PF12226.8 gi|284165796|ref|YP_003404075.1| - 6.3 5.9 12.5 6.8 5.7 12.5 1.1 1 0 0 1 1 1 0 Turkey astrovirus capsid protein Ribosomal_S28e PF01200.18 gi|284165797|ref|YP_003404076.1| - 1.6e-28 98.5 1.0 1.8e-28 98.3 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|284165798|ref|YP_003404077.1| - 3.7e-25 87.5 0.0 4.4e-25 87.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|284165798|ref|YP_003404077.1| - 1.3e-05 25.0 0.0 1.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|284165798|ref|YP_003404077.1| - 0.053 14.0 0.1 0.11 13.0 0.1 1.7 1 1 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|284165798|ref|YP_003404077.1| - 0.078 13.3 1.5 12 6.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) DUF433 PF04255.14 gi|284165798|ref|YP_003404077.1| - 0.099 12.5 0.4 1.8 8.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF433) DGC PF08859.11 gi|284165799|ref|YP_003404078.1| - 2.3e-34 117.7 0.2 2.7e-34 117.4 0.2 1.0 1 0 0 1 1 1 1 DGC domain Oxidored_molyb PF00174.19 gi|284165800|ref|YP_003404079.1| - 2.5e-28 98.8 0.0 3.4e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF3302 PF11742.8 gi|284165800|ref|YP_003404079.1| - 0.11 12.7 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3302) Glyoxalase_6 PF18029.1 gi|284165801|ref|YP_003404080.1| - 6e-26 91.3 0.1 7e-26 91.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain TFIIF_alpha PF05793.12 gi|284165802|ref|YP_003404081.1| - 8.9 4.8 18.1 13 4.2 18.1 1.2 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Helicase_RecD PF05127.14 gi|284165803|ref|YP_003404082.1| - 1.4e-48 165.0 0.0 2.3e-48 164.4 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|284165803|ref|YP_003404082.1| - 1.4e-44 152.2 0.0 4.9e-28 98.1 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|284165803|ref|YP_003404082.1| - 1.1e-25 89.3 0.0 3.9e-24 84.4 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|284165803|ref|YP_003404082.1| - 2.2e-07 30.8 1.4 1.1e-06 28.5 1.1 2.3 2 0 0 2 2 2 1 AAA domain Acetyltransf_13 PF13880.6 gi|284165803|ref|YP_003404082.1| - 0.025 14.6 0.0 0.054 13.5 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Myb_DNA-binding PF00249.31 gi|284165803|ref|YP_003404082.1| - 0.033 14.4 0.0 0.072 13.3 0.0 1.5 1 0 0 1 1 1 0 Myb-like DNA-binding domain Acetyltransf_7 PF13508.7 gi|284165803|ref|YP_003404082.1| - 0.046 14.2 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3459 PF11941.8 gi|284165803|ref|YP_003404082.1| - 0.055 13.8 1.6 0.37 11.2 1.6 2.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Aminotran_5 PF00266.19 gi|284165804|ref|YP_003404083.1| - 1.2e-20 73.8 0.0 1.4e-20 73.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|284165804|ref|YP_003404083.1| - 0.0048 16.1 0.0 0.011 14.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II adh_short PF00106.25 gi|284165805|ref|YP_003404084.1| - 1.2e-32 113.0 0.7 1.5e-32 112.6 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284165805|ref|YP_003404084.1| - 6e-25 88.2 2.7 7.1e-25 87.9 2.7 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284165805|ref|YP_003404084.1| - 3.2e-08 33.7 1.3 6.2e-08 32.8 1.3 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284165805|ref|YP_003404084.1| - 3.7e-06 26.6 0.4 7.8e-06 25.5 0.4 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|284165805|ref|YP_003404084.1| - 5.2e-06 26.5 2.8 8.4e-06 25.8 2.8 1.4 1 1 0 1 1 1 1 NAD(P)H-binding F420_oxidored PF03807.17 gi|284165805|ref|YP_003404084.1| - 0.018 15.6 1.1 0.15 12.7 1.0 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|284165805|ref|YP_003404084.1| - 0.036 14.0 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DFP PF04127.15 gi|284165805|ref|YP_003404084.1| - 0.071 12.9 0.2 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF456 PF04306.13 gi|284165806|ref|YP_003404085.1| - 4.3e-25 88.6 28.9 4.3e-25 88.6 28.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF456) DUF2976 PF11190.8 gi|284165806|ref|YP_003404085.1| - 0.017 14.9 1.7 0.017 14.9 1.7 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2976) HypA PF01155.19 gi|284165807|ref|YP_003404086.1| - 7.6e-07 29.1 1.1 9.4e-07 28.8 1.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|284165807|ref|YP_003404086.1| - 4.6e-06 26.4 3.5 6.7e-06 25.9 3.5 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|284165807|ref|YP_003404086.1| - 9.5e-05 22.4 7.2 0.00027 21.0 7.2 1.8 1 1 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|284165807|ref|YP_003404086.1| - 0.00042 21.0 1.5 0.00067 20.4 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon family NOB1_Zn_bind PF08772.11 gi|284165807|ref|YP_003404086.1| - 0.00054 20.1 0.1 0.00067 19.8 0.1 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|284165807|ref|YP_003404086.1| - 0.0015 18.5 1.3 0.0022 18.0 1.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon TackOD1 PF18551.1 gi|284165807|ref|YP_003404086.1| - 0.0023 17.6 0.3 0.0031 17.2 0.3 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zinc-ribbons_6 PF07191.12 gi|284165807|ref|YP_003404086.1| - 0.0044 17.0 1.0 0.0061 16.5 1.0 1.2 1 0 0 1 1 1 1 zinc-ribbons DUF2072 PF09845.9 gi|284165807|ref|YP_003404086.1| - 0.011 15.9 2.7 0.014 15.6 2.7 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein DNA_ligase_ZBD PF03119.16 gi|284165807|ref|YP_003404086.1| - 0.014 15.4 6.5 0.38 10.8 0.2 3.0 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.7 gi|284165807|ref|YP_003404086.1| - 0.026 14.9 2.3 1.5 9.3 0.2 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NRDD PF13597.6 gi|284165807|ref|YP_003404086.1| - 0.033 13.0 1.1 0.041 12.7 1.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_9 PF14369.6 gi|284165807|ref|YP_003404086.1| - 0.041 14.1 5.1 0.86 9.9 5.3 2.3 1 1 1 2 2 2 0 zinc-ribbon Zn_Tnp_IS1 PF03811.13 gi|284165807|ref|YP_003404086.1| - 0.096 12.4 3.1 5.2 6.9 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Rubredoxin_2 PF18073.1 gi|284165807|ref|YP_003404086.1| - 0.71 9.6 4.3 1.6 8.5 4.3 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain Trypan_PARP PF05887.11 gi|284165807|ref|YP_003404086.1| - 1.5 8.8 8.3 2 8.4 8.3 1.3 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) zf-HIT PF04438.16 gi|284165807|ref|YP_003404086.1| - 2.4 8.1 6.2 6.1 6.8 3.5 2.1 1 1 1 2 2 2 0 HIT zinc finger tRNA-synt_1c PF00749.21 gi|284165808|ref|YP_003404087.1| - 1.7e-59 201.2 0.0 2.2e-59 200.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|284165808|ref|YP_003404087.1| - 1e-19 71.1 0.0 1.9e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain polyprenyl_synt PF00348.17 gi|284165809|ref|YP_003404088.1| - 5.9e-66 222.1 0.2 7.2e-66 221.9 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B_2 PF12706.7 gi|284165810|ref|YP_003404089.1| - 6.3e-10 38.9 1.6 3.5e-07 29.9 0.1 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284165810|ref|YP_003404089.1| - 5.7e-07 29.7 1.8 5.7e-07 29.7 1.8 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|284165810|ref|YP_003404089.1| - 1.7e-05 24.6 0.3 0.00076 19.4 0.0 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain AA_kinase PF00696.28 gi|284165811|ref|YP_003404090.1| - 6e-39 134.1 4.7 7.1e-39 133.8 4.7 1.0 1 0 0 1 1 1 1 Amino acid kinase family EccE PF11203.8 gi|284165811|ref|YP_003404090.1| - 0.76 10.1 6.5 5.2 7.5 0.1 3.5 3 1 0 4 4 4 0 Putative type VII ESX secretion system translocon, EccE GHMP_kinases_C PF08544.13 gi|284165812|ref|YP_003404091.1| - 8.4e-15 54.9 0.5 8.4e-15 54.9 0.5 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|284165812|ref|YP_003404091.1| - 1.1e-14 54.3 0.4 2.5e-14 53.3 0.4 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|284165812|ref|YP_003404091.1| - 0.00038 19.9 0.1 0.00087 18.8 0.1 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature ThiP_synth PF10120.9 gi|284165813|ref|YP_003404092.1| - 1.8e-53 180.5 1.2 2.6e-53 180.0 1.2 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|284165813|ref|YP_003404092.1| - 8.6e-08 32.1 0.2 1.2e-06 28.5 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|284165813|ref|YP_003404092.1| - 1e-05 25.8 2.0 0.00054 20.3 0.1 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|284165813|ref|YP_003404092.1| - 6e-05 22.7 0.0 0.00027 20.6 0.0 2.1 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|284165813|ref|YP_003404092.1| - 0.00011 22.0 0.5 0.0055 16.6 0.0 2.9 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|284165813|ref|YP_003404092.1| - 0.00028 20.3 0.0 0.0016 17.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284165813|ref|YP_003404092.1| - 0.00053 19.5 0.0 0.0013 18.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|284165813|ref|YP_003404092.1| - 0.0017 18.7 0.0 0.0035 17.7 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain RepB PF07506.11 gi|284165813|ref|YP_003404092.1| - 0.0036 17.4 0.0 0.0078 16.3 0.0 1.5 1 0 0 1 1 1 1 RepB plasmid partitioning protein HTH_37 PF13744.6 gi|284165813|ref|YP_003404092.1| - 0.0036 17.2 0.0 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain LacI PF00356.21 gi|284165813|ref|YP_003404092.1| - 0.0076 16.0 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family YdaS_antitoxin PF15943.5 gi|284165813|ref|YP_003404092.1| - 0.019 14.8 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 gi|284165813|ref|YP_003404092.1| - 0.02 14.5 0.1 0.053 13.2 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|284165813|ref|YP_003404092.1| - 0.022 14.7 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 gi|284165813|ref|YP_003404092.1| - 0.023 14.4 1.0 0.075 12.8 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|284165813|ref|YP_003404092.1| - 0.025 14.6 0.0 0.072 13.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|284165813|ref|YP_003404092.1| - 0.041 14.0 0.0 0.2 11.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|284165813|ref|YP_003404092.1| - 0.053 13.4 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 MarR family Cro PF09048.10 gi|284165813|ref|YP_003404092.1| - 0.14 12.2 0.1 0.32 11.1 0.1 1.5 1 0 0 1 1 1 0 Cro KORA PF16509.5 gi|284165813|ref|YP_003404092.1| - 0.16 12.3 0.1 0.32 11.3 0.1 1.5 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor Ribosomal_S2 PF00318.20 gi|284165815|ref|YP_003404094.1| - 1.1e-23 83.7 0.3 7.9e-14 51.4 0.7 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Enolase_C PF00113.22 gi|284165816|ref|YP_003404095.1| - 8.2e-77 258.3 0.2 1.2e-76 257.8 0.2 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|284165816|ref|YP_003404095.1| - 7.9e-35 119.9 0.3 2.9e-34 118.0 0.3 2.0 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|284165816|ref|YP_003404095.1| - 1e-10 41.6 0.0 2.4e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|284165816|ref|YP_003404095.1| - 0.001 18.3 0.0 0.0021 17.2 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DUF903 PF06004.12 gi|284165816|ref|YP_003404095.1| - 0.12 12.3 2.0 1.1 9.2 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) RNA_pol_Rpb6 PF01192.22 gi|284165817|ref|YP_003404096.1| - 6.4e-12 45.2 0.0 7.5e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|284165818|ref|YP_003404097.1| - 9.6e-29 99.5 0.2 1e-28 99.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|284165819|ref|YP_003404098.1| - 3.9e-33 114.5 0.1 4.4e-33 114.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|284165820|ref|YP_003404099.1| - 7.7e-09 35.9 0.1 3.1e-06 27.5 0.1 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|284165821|ref|YP_003404100.1| - 2.4e-08 33.6 0.0 2.5e-08 33.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|284165821|ref|YP_003404100.1| - 5.7e-07 30.3 0.5 1.7e-06 28.7 0.5 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|284165822|ref|YP_003404101.1| - 5.3e-20 71.9 0.0 2.2e-19 69.9 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|284165822|ref|YP_003404101.1| - 8.1e-16 57.2 0.0 1.1e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|284165823|ref|YP_003404102.1| - 3.9e-47 159.2 2.5 5e-47 158.9 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|284165823|ref|YP_003404102.1| - 0.014 15.8 0.2 0.019 15.3 0.2 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S4 PF01479.25 gi|284165824|ref|YP_003404103.1| - 1.4e-09 37.5 0.4 1.4e-09 37.5 0.4 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S13 PF00416.22 gi|284165825|ref|YP_003404104.1| - 2.3e-43 147.7 4.4 2.8e-43 147.3 4.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 CarboxypepD_reg PF13620.6 gi|284165826|ref|YP_003404105.1| - 0.0012 19.1 0.9 0.053 13.8 0.3 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain TAT_signal PF10518.9 gi|284165826|ref|YP_003404105.1| - 0.21 11.5 2.1 0.37 10.7 2.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AMP-binding PF00501.28 gi|284165827|ref|YP_003404106.1| - 7.7e-90 301.5 0.0 9.7e-90 301.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme Radical_SAM PF04055.21 gi|284165828|ref|YP_003404107.1| - 3.4e-24 86.1 0.0 2e-23 83.6 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|284165828|ref|YP_003404107.1| - 2.3e-17 63.1 0.0 3.7e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|284165828|ref|YP_003404107.1| - 5.1e-07 30.1 0.0 1.1e-06 29.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|284165828|ref|YP_003404107.1| - 1.9e-06 28.0 0.0 5.2e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain PAS_3 PF08447.12 gi|284165828|ref|YP_003404107.1| - 0.11 12.8 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 PAS fold Cytochrom_C PF00034.21 gi|284165828|ref|YP_003404107.1| - 0.13 13.4 0.1 16 6.7 0.0 2.9 3 1 0 3 3 3 0 Cytochrome c Cdc6_C PF09079.11 gi|284165830|ref|YP_003404109.1| - 9.5e-11 41.5 0.0 2e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|284165830|ref|YP_003404109.1| - 1.6e-10 41.5 0.0 3.9e-10 40.3 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284165830|ref|YP_003404109.1| - 9.5e-10 39.1 0.3 3.7e-09 37.2 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284165830|ref|YP_003404109.1| - 5.8e-08 33.1 0.0 1.5e-07 31.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain DUF815 PF05673.13 gi|284165830|ref|YP_003404109.1| - 1.2e-05 24.6 0.0 2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|284165830|ref|YP_003404109.1| - 0.00016 21.6 0.0 0.00031 20.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|284165830|ref|YP_003404109.1| - 0.0022 17.4 0.0 0.0085 15.5 0.0 1.9 1 1 0 1 1 1 1 Bacterial TniB protein AAA_5 PF07728.14 gi|284165830|ref|YP_003404109.1| - 0.0084 16.1 0.0 0.049 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|284165830|ref|YP_003404109.1| - 0.0091 15.5 0.0 0.022 14.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|284165830|ref|YP_003404109.1| - 0.019 15.3 0.0 0.077 13.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Sigma54_activat PF00158.26 gi|284165830|ref|YP_003404109.1| - 0.021 14.5 0.0 0.038 13.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|284165830|ref|YP_003404109.1| - 0.025 14.3 0.1 0.064 13.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|284165830|ref|YP_003404109.1| - 0.028 14.9 0.4 0.16 12.4 0.0 2.3 2 2 1 3 3 3 0 ABC transporter AAA_25 PF13481.6 gi|284165830|ref|YP_003404109.1| - 0.03 13.9 1.5 0.15 11.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_32 PF13654.6 gi|284165830|ref|YP_003404109.1| - 0.035 12.9 0.3 0.71 8.6 0.2 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|284165830|ref|YP_003404109.1| - 0.04 13.8 0.0 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|284165830|ref|YP_003404109.1| - 0.069 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|284165830|ref|YP_003404109.1| - 0.07 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RtcB PF01139.17 gi|284165831|ref|YP_003404110.1| - 5.1e-157 523.3 0.1 5.8e-157 523.1 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.12 gi|284165832|ref|YP_003404111.1| - 1.6e-07 31.8 7.3 1.6e-07 31.8 7.3 3.8 3 1 1 4 4 4 2 DoxX DoxD PF04173.13 gi|284165832|ref|YP_003404111.1| - 2.1 8.2 11.2 12 5.8 1.9 3.5 3 1 0 3 3 3 0 TQO small subunit DoxD Archease PF01951.16 gi|284165833|ref|YP_003404112.1| - 3.1e-34 118.2 0.0 3.5e-34 118.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Acetyltransf_10 PF13673.7 gi|284165834|ref|YP_003404113.1| - 8e-16 58.1 0.1 9.9e-16 57.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284165834|ref|YP_003404113.1| - 1e-15 57.9 0.1 1.7e-15 57.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284165834|ref|YP_003404113.1| - 2.2e-13 50.5 0.1 3.1e-13 50.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|284165834|ref|YP_003404113.1| - 1.2e-09 38.0 0.0 2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|284165834|ref|YP_003404113.1| - 0.00061 20.0 0.0 0.0012 18.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|284165834|ref|YP_003404113.1| - 0.0062 16.7 0.1 0.011 15.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284165834|ref|YP_003404113.1| - 0.0074 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|284165834|ref|YP_003404113.1| - 0.021 14.9 0.0 0.098 12.7 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NAT PF04768.13 gi|284165834|ref|YP_003404113.1| - 0.12 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase Acetyltransf_8 PF13523.6 gi|284165834|ref|YP_003404113.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.6 gi|284165834|ref|YP_003404113.1| - 1.1 9.7 4.6 1.8 9.1 3.3 2.0 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein DNA_primase_S PF01896.19 gi|284165835|ref|YP_003404114.1| - 2.4e-23 83.1 0.1 3.8e-22 79.2 0.1 2.2 1 1 0 1 1 1 1 DNA primase small subunit Sld5 PF05916.11 gi|284165836|ref|YP_003404115.1| - 0.00036 21.0 0.1 0.00054 20.4 0.1 1.3 1 0 0 1 1 1 1 GINS complex protein Mac PF12464.8 gi|284165837|ref|YP_003404116.1| - 2.5e-19 69.3 0.0 3.9e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Maltose acetyltransferase Hexapep PF00132.24 gi|284165837|ref|YP_003404116.1| - 8.7e-14 50.6 10.2 5.2e-09 35.5 2.5 3.3 3 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284165837|ref|YP_003404116.1| - 5.9e-13 48.3 11.9 4.8e-10 39.0 1.7 3.6 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF3601 PF12208.8 gi|284165837|ref|YP_003404116.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3601) AhpC-TSA PF00578.21 gi|284165838|ref|YP_003404117.1| - 4.1e-35 120.4 0.0 4.9e-35 120.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284165838|ref|YP_003404117.1| - 5e-18 65.2 0.0 5.9e-18 65.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|284165838|ref|YP_003404117.1| - 6.4e-07 29.4 0.0 8.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|284165838|ref|YP_003404117.1| - 0.00053 19.6 0.0 0.00074 19.1 0.0 1.3 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|284165838|ref|YP_003404117.1| - 0.0012 18.9 0.0 0.0018 18.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme MFS_1 PF07690.16 gi|284165839|ref|YP_003404118.1| - 2.4e-32 112.3 52.7 8.5e-32 110.4 44.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1700 PF08006.11 gi|284165839|ref|YP_003404118.1| - 7.2 6.1 20.2 1.4 8.4 4.7 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1700) PQQ_2 PF13360.6 gi|284165840|ref|YP_003404119.1| - 2.2e-29 102.7 19.5 3.9e-20 72.4 6.6 3.3 2 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|284165840|ref|YP_003404119.1| - 9e-18 63.3 12.3 0.00018 21.3 0.3 5.9 5 0 0 5 5 5 5 PQQ enzyme repeat PQQ_3 PF13570.6 gi|284165840|ref|YP_003404119.1| - 3.8e-17 62.2 32.7 0.002 18.5 1.1 7.4 7 1 0 7 7 7 5 PQQ-like domain SDA1 PF05285.12 gi|284165840|ref|YP_003404119.1| - 0.75 9.2 17.3 1.4 8.3 17.3 1.4 1 0 0 1 1 1 0 SDA1 AAA PF00004.29 gi|284165841|ref|YP_003404120.1| - 1.3e-100 333.0 0.0 2.2e-49 167.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284165841|ref|YP_003404120.1| - 1.3e-27 95.4 3.3 1.1e-13 50.7 0.2 2.9 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|284165841|ref|YP_003404120.1| - 1.8e-24 85.7 0.1 1.4e-23 82.9 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|284165841|ref|YP_003404120.1| - 6.1e-17 62.3 0.2 4.3e-08 33.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|284165841|ref|YP_003404120.1| - 3.7e-16 59.3 0.0 7.2e-08 32.3 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|284165841|ref|YP_003404120.1| - 9.8e-16 57.3 0.1 2.9e-15 55.8 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|284165841|ref|YP_003404120.1| - 2.2e-13 51.0 0.4 1.1e-05 25.8 0.1 3.7 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|284165841|ref|YP_003404120.1| - 5e-11 42.9 0.0 0.00011 22.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|284165841|ref|YP_003404120.1| - 6.4e-11 42.4 1.2 0.00034 20.6 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|284165841|ref|YP_003404120.1| - 1e-10 42.0 0.3 0.0026 18.1 0.0 3.8 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|284165841|ref|YP_003404120.1| - 3.6e-10 39.6 0.0 0.00027 20.3 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|284165841|ref|YP_003404120.1| - 3.9e-09 36.6 0.0 0.0012 18.9 0.0 2.6 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|284165841|ref|YP_003404120.1| - 2.3e-08 34.4 0.0 0.0054 17.1 0.0 2.7 2 0 0 2 2 2 2 RNA helicase DUF815 PF05673.13 gi|284165841|ref|YP_003404120.1| - 9.2e-08 31.5 0.0 0.00066 18.9 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|284165841|ref|YP_003404120.1| - 1.1e-07 31.8 0.0 0.005 16.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|284165841|ref|YP_003404120.1| - 2e-07 30.7 0.0 0.027 14.0 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|284165841|ref|YP_003404120.1| - 4.1e-07 29.8 0.9 0.36 10.4 0.1 4.2 4 0 0 4 4 4 1 AAA domain Mg_chelatase PF01078.21 gi|284165841|ref|YP_003404120.1| - 4.2e-07 29.6 0.3 0.013 14.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|284165841|ref|YP_003404120.1| - 1.2e-06 28.5 0.0 0.016 15.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|284165841|ref|YP_003404120.1| - 2.5e-06 27.8 0.0 0.043 14.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|284165841|ref|YP_003404120.1| - 3.1e-06 27.8 0.0 0.2 12.2 0.0 3.2 3 0 0 3 3 3 2 AAA domain TsaE PF02367.17 gi|284165841|ref|YP_003404120.1| - 3.6e-06 27.0 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|284165841|ref|YP_003404120.1| - 3.7e-06 27.5 0.0 0.081 13.4 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|284165841|ref|YP_003404120.1| - 8.3e-06 25.8 0.2 0.89 9.5 0.0 4.1 3 1 1 4 4 4 2 NACHT domain AAA_11 PF13086.6 gi|284165841|ref|YP_003404120.1| - 1.4e-05 25.0 0.0 0.13 12.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|284165841|ref|YP_003404120.1| - 1.4e-05 24.9 0.1 0.18 11.5 0.0 3.0 3 1 0 3 3 2 2 Sigma-54 interaction domain ATPase PF06745.13 gi|284165841|ref|YP_003404120.1| - 1.5e-05 24.5 0.2 0.23 10.8 0.0 3.5 2 1 1 3 3 3 2 KaiC NB-ARC PF00931.22 gi|284165841|ref|YP_003404120.1| - 1.9e-05 24.0 0.0 0.2 10.8 0.0 2.7 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.16 gi|284165841|ref|YP_003404120.1| - 2e-05 24.1 0.1 0.073 12.5 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.6 gi|284165841|ref|YP_003404120.1| - 2.3e-05 24.2 0.1 0.15 11.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|284165841|ref|YP_003404120.1| - 3.7e-05 23.5 0.0 0.15 11.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.12 gi|284165841|ref|YP_003404120.1| - 5.6e-05 22.5 0.1 0.21 10.9 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|284165841|ref|YP_003404120.1| - 7.9e-05 22.1 0.0 0.27 10.4 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.18 gi|284165841|ref|YP_003404120.1| - 0.00016 21.6 0.0 0.19 11.6 0.0 2.7 2 1 0 2 2 2 1 Bacterial dnaA protein ATPase_2 PF01637.18 gi|284165841|ref|YP_003404120.1| - 0.00021 21.3 0.0 1.3 8.8 0.0 3.6 2 2 2 4 4 4 1 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|284165841|ref|YP_003404120.1| - 0.00042 19.5 0.1 0.62 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Vps4_C PF09336.10 gi|284165841|ref|YP_003404120.1| - 0.00047 20.1 0.3 0.31 11.1 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|284165841|ref|YP_003404120.1| - 0.00085 19.8 0.0 2.8 8.4 0.0 2.9 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|284165841|ref|YP_003404120.1| - 0.00094 19.1 0.6 1.9 8.4 0.0 3.8 3 2 1 4 4 2 1 NTPase AAA_19 PF13245.6 gi|284165841|ref|YP_003404120.1| - 0.001 19.4 0.3 2.6 8.4 0.1 2.7 2 1 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|284165841|ref|YP_003404120.1| - 0.0021 18.2 0.0 3.3 7.8 0.0 2.7 3 0 0 3 3 2 0 Sigma-54 interaction domain Rad17 PF03215.15 gi|284165841|ref|YP_003404120.1| - 0.0061 16.5 0.0 5.2 6.9 0.0 3.0 3 0 0 3 3 3 0 Rad17 P-loop domain T2SSE PF00437.20 gi|284165841|ref|YP_003404120.1| - 0.0078 15.3 0.0 1.5 7.8 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.15 gi|284165841|ref|YP_003404120.1| - 0.0094 16.0 0.0 3.3 7.7 0.0 2.9 2 2 0 2 2 2 0 Type III restriction enzyme, res subunit Zot PF05707.12 gi|284165841|ref|YP_003404120.1| - 0.011 15.4 0.0 0.6 9.7 0.0 2.7 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) AFG1_ATPase PF03969.16 gi|284165841|ref|YP_003404120.1| - 0.014 14.3 0.0 3.3 6.5 0.0 2.6 2 0 0 2 2 2 0 AFG1-like ATPase Cytidylate_kin PF02224.18 gi|284165841|ref|YP_003404120.1| - 0.026 14.3 0.1 10 5.8 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase HJURP_C PF12347.8 gi|284165841|ref|YP_003404120.1| - 0.029 14.4 0.3 0.068 13.2 0.3 1.6 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat TniB PF05621.11 gi|284165841|ref|YP_003404120.1| - 0.037 13.4 0.1 24 4.3 0.0 3.6 2 2 2 4 4 4 0 Bacterial TniB protein cobW PF02492.19 gi|284165841|ref|YP_003404120.1| - 0.041 13.5 0.1 37 3.8 0.0 3.4 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Torsin PF06309.11 gi|284165841|ref|YP_003404120.1| - 0.11 12.5 0.0 5.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin AAA_29 PF13555.6 gi|284165841|ref|YP_003404120.1| - 0.16 11.8 0.0 28 4.5 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PIF1 PF05970.14 gi|284165841|ref|YP_003404120.1| - 0.16 11.1 0.0 11 5.1 0.0 2.6 3 0 0 3 3 3 0 PIF1-like helicase COOH-NH2_lig PF14395.6 gi|284165841|ref|YP_003404120.1| - 0.19 10.9 1.0 5.2 6.2 0.0 2.7 3 0 0 3 3 3 0 Phage phiEco32-like COOH.NH2 ligase-type 2 Viral_helicase1 PF01443.18 gi|284165841|ref|YP_003404120.1| - 0.21 11.3 0.0 16 5.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase UMPH-1 PF05822.12 gi|284165842|ref|YP_003404121.1| - 0.014 14.9 0.1 0.014 14.9 0.1 1.1 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) ArsA_HSP20 PF17886.1 gi|284165842|ref|YP_003404121.1| - 0.031 13.8 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 HSP20-like domain found in ArsA Abhydrolase_6 PF12697.7 gi|284165843|ref|YP_003404122.1| - 4e-22 79.9 10.7 5e-22 79.6 10.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284165843|ref|YP_003404122.1| - 4.1e-16 59.0 0.1 5.2e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|284165843|ref|YP_003404122.1| - 6.5e-16 58.7 0.6 2.7e-14 53.5 0.6 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|284165843|ref|YP_003404122.1| - 0.0055 16.8 0.0 0.016 15.3 0.0 1.7 2 0 0 2 2 2 1 TAP-like protein PGAP1 PF07819.13 gi|284165843|ref|YP_003404122.1| - 0.016 14.9 0.9 7.7 6.2 0.0 3.1 2 1 0 3 3 3 0 PGAP1-like protein Esterase PF00756.20 gi|284165843|ref|YP_003404122.1| - 0.15 11.7 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Putative esterase FSH1 PF03959.13 gi|284165843|ref|YP_003404122.1| - 0.16 11.6 0.0 0.4 10.3 0.0 1.6 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Pantoate_transf PF02548.15 gi|284165844|ref|YP_003404123.1| - 1e-104 349.5 0.9 1.3e-104 349.2 0.9 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|284165844|ref|YP_003404123.1| - 0.00018 21.0 0.6 0.00035 20.1 0.6 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase HAD_2 PF13419.6 gi|284165846|ref|YP_003404125.1| - 3.3e-18 66.4 0.0 2.1e-17 63.8 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284165846|ref|YP_003404125.1| - 9.8e-08 32.5 3.7 2.7e-06 27.8 0.4 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284165846|ref|YP_003404125.1| - 4.6e-06 26.6 0.0 1.3e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|284165846|ref|YP_003404125.1| - 2.2e-05 24.9 0.7 3.2e-05 24.4 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acyl-CoA_dh_1 PF00441.24 gi|284165847|ref|YP_003404126.1| - 2.2e-49 167.5 5.3 3.5e-49 166.9 5.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284165847|ref|YP_003404126.1| - 4.2e-33 114.4 0.2 4.2e-33 114.4 0.2 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284165847|ref|YP_003404126.1| - 2.5e-26 91.7 0.0 5.4e-26 90.6 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284165847|ref|YP_003404126.1| - 9e-25 87.5 6.0 1.9e-24 86.4 6.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF2951 PF11166.8 gi|284165849|ref|YP_003404128.1| - 0.0031 17.7 0.3 0.0093 16.2 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2951) TAT_signal PF10518.9 gi|284165849|ref|YP_003404128.1| - 0.13 12.1 3.6 0.31 11.0 3.6 1.6 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DHDPS PF00701.22 gi|284165850|ref|YP_003404129.1| - 5.1e-73 245.3 0.0 5.7e-73 245.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HTH_10 PF04967.12 gi|284165851|ref|YP_003404130.1| - 8.4e-19 67.1 0.2 1.3e-18 66.5 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284165851|ref|YP_003404130.1| - 7e-13 48.7 6.2 1.1e-12 48.1 6.2 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain UPF0122 PF04297.14 gi|284165851|ref|YP_003404130.1| - 0.0019 18.4 0.0 0.0038 17.4 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 gi|284165851|ref|YP_003404130.1| - 0.0025 17.3 0.4 0.0056 16.2 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r3 PF04539.16 gi|284165851|ref|YP_003404130.1| - 0.0043 17.1 0.6 0.014 15.5 0.6 1.9 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_24 PF13412.6 gi|284165851|ref|YP_003404130.1| - 0.021 14.4 0.2 0.051 13.1 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284165851|ref|YP_003404130.1| - 0.027 14.3 0.2 0.066 13.1 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|284165851|ref|YP_003404130.1| - 0.055 13.5 0.3 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|284165851|ref|YP_003404130.1| - 0.1 12.4 0.1 0.24 11.2 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TEX19 PF15553.6 gi|284165851|ref|YP_003404130.1| - 0.11 12.4 0.1 0.22 11.5 0.1 1.4 1 1 0 1 1 1 0 Testis-expressed protein 19 HTH_psq PF05225.16 gi|284165851|ref|YP_003404130.1| - 0.19 11.5 4.8 0.87 9.4 0.0 3.2 3 1 0 3 3 3 0 helix-turn-helix, Psq domain Hydrolase_3 PF08282.12 gi|284165852|ref|YP_003404131.1| - 2.6e-09 37.2 0.0 0.00026 20.8 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284165852|ref|YP_003404131.1| - 0.0018 18.7 4.0 3.1 8.1 0.1 3.7 2 2 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284165852|ref|YP_003404131.1| - 0.0064 16.8 0.1 0.016 15.5 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glu_dehyd_C PF16912.5 gi|284165853|ref|YP_003404132.1| - 1.4e-100 335.1 0.0 1.8e-100 334.7 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|284165853|ref|YP_003404132.1| - 1.6e-08 34.4 0.0 2.4e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284165853|ref|YP_003404132.1| - 6.3e-06 26.2 0.0 9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|284165853|ref|YP_003404132.1| - 0.0015 18.4 0.1 0.0042 17.0 0.1 1.7 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Pribosyltran PF00156.27 gi|284165854|ref|YP_003404133.1| - 2.1e-15 56.6 0.0 4.1e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|284165854|ref|YP_003404133.1| - 0.00046 19.9 0.1 0.0014 18.4 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.15 gi|284165854|ref|YP_003404133.1| - 0.0088 16.1 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|284165854|ref|YP_003404133.1| - 0.01 15.7 0.2 0.089 12.8 0.1 2.2 2 0 0 2 2 2 0 HTH domain GerE PF00196.19 gi|284165854|ref|YP_003404133.1| - 0.025 14.1 0.0 0.05 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|284165854|ref|YP_003404133.1| - 0.03 14.1 0.1 0.36 10.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284165854|ref|YP_003404133.1| - 0.045 13.3 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 PRTase_2 PF15609.6 gi|284165854|ref|YP_003404133.1| - 0.062 12.8 0.1 0.13 11.8 0.0 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase HTH_24 PF13412.6 gi|284165854|ref|YP_003404133.1| - 0.068 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284165854|ref|YP_003404133.1| - 0.088 12.7 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|284165854|ref|YP_003404133.1| - 0.16 12.0 0.0 0.48 10.4 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain GETHR PF05671.11 gi|284165855|ref|YP_003404134.1| - 0.029 13.7 2.4 1.1 8.7 2.4 2.7 1 1 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) SDA1 PF05285.12 gi|284165855|ref|YP_003404134.1| - 3 7.2 13.2 3.2 7.1 13.2 1.0 1 0 0 1 1 1 0 SDA1 DUF4399 PF14347.6 gi|284165856|ref|YP_003404135.1| - 4.2e-24 84.7 0.0 5.8e-24 84.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) TAT_signal PF10518.9 gi|284165856|ref|YP_003404135.1| - 0.029 14.2 0.0 0.047 13.6 0.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TFIIB PF00382.19 gi|284165857|ref|YP_003404136.1| - 9.6e-47 156.9 2.9 8.4e-26 89.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|284165857|ref|YP_003404136.1| - 4.3e-19 67.7 3.4 8.6e-19 66.8 3.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|284165857|ref|YP_003404136.1| - 0.0036 17.0 0.5 0.0082 15.8 0.5 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain HARE-HTH PF05066.13 gi|284165857|ref|YP_003404136.1| - 0.011 16.1 0.1 0.52 10.7 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain PhnA_Zn_Ribbon PF08274.12 gi|284165857|ref|YP_003404136.1| - 0.039 13.9 2.1 0.084 12.8 2.1 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.19 gi|284165857|ref|YP_003404136.1| - 0.058 13.5 0.0 0.56 10.3 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|284165857|ref|YP_003404136.1| - 0.076 12.5 2.9 0.37 10.3 0.1 3.4 3 1 1 4 4 4 0 Sigma-70, region 4 RB_B PF01857.20 gi|284165857|ref|YP_003404136.1| - 0.078 13.0 0.0 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 Retinoblastoma-associated protein B domain Zn_Tnp_IS1595 PF12760.7 gi|284165857|ref|YP_003404136.1| - 0.079 13.0 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|284165857|ref|YP_003404136.1| - 0.095 13.1 1.3 0.17 12.3 0.4 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_23 PF13384.6 gi|284165857|ref|YP_003404136.1| - 0.096 12.5 0.8 0.7 9.8 0.1 2.8 3 0 0 3 3 3 0 Homeodomain-like domain RPA_interact_C PF14768.6 gi|284165857|ref|YP_003404136.1| - 0.12 12.9 0.0 0.29 11.7 0.0 1.8 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn-ribbon_8 PF09723.10 gi|284165857|ref|YP_003404136.1| - 0.87 9.8 3.4 6.6 6.9 0.4 2.5 1 1 0 2 2 2 0 Zinc ribbon domain RVT_3 PF13456.6 gi|284165858|ref|YP_003404137.1| - 5.8e-24 84.3 0.0 7.8e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|284165858|ref|YP_003404137.1| - 6.4e-10 39.4 0.0 1.6e-09 38.1 0.0 1.7 1 1 0 1 1 1 1 RNase H Dus PF01207.17 gi|284165859|ref|YP_003404138.1| - 0.064 12.3 0.0 0.14 11.2 0.0 1.5 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) SWC7 PF17330.2 gi|284165859|ref|YP_003404138.1| - 0.093 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 SWR1 chromatin-remodelling complex, sub-unit Swc7 Phage_int_SAM_4 PF13495.6 gi|284165859|ref|YP_003404138.1| - 0.11 13.0 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Homeodomain PF00046.29 gi|284165859|ref|YP_003404138.1| - 0.11 12.4 0.1 0.26 11.2 0.1 1.7 1 0 0 1 1 1 0 Homeodomain PadR PF03551.14 gi|284165860|ref|YP_003404139.1| - 3.3e-17 62.2 0.5 4.9e-17 61.6 0.5 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|284165860|ref|YP_003404139.1| - 8.2e-05 23.2 0.0 9.9e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein HTH_27 PF13463.6 gi|284165860|ref|YP_003404139.1| - 0.0002 21.8 0.1 0.00049 20.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|284165860|ref|YP_003404139.1| - 0.0058 16.4 0.0 0.0096 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|284165860|ref|YP_003404139.1| - 0.04 13.9 0.1 0.066 13.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Pyrophosphatase PF00719.19 gi|284165861|ref|YP_003404140.1| - 3.8e-51 173.1 1.6 4.3e-51 172.9 1.6 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phosphodiest PF01663.22 gi|284165863|ref|YP_003404142.1| - 1.2e-62 212.6 0.1 1.3e-62 212.4 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2990 PF11693.8 gi|284165863|ref|YP_003404142.1| - 0.0081 16.3 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2990) Sulfatase PF00884.23 gi|284165863|ref|YP_003404142.1| - 0.013 15.0 1.1 0.061 12.7 0.1 2.2 2 0 0 2 2 2 0 Sulfatase DUF371 PF04027.13 gi|284165864|ref|YP_003404143.1| - 3.4e-53 179.2 0.0 3.8e-53 179.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) MEDS PF14417.6 gi|284165865|ref|YP_003404144.1| - 2e-54 183.8 3.6 7.3e-54 181.9 2.7 2.5 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|284165865|ref|YP_003404144.1| - 3.1e-30 105.0 0.0 2e-29 102.4 0.0 2.5 3 0 0 3 3 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|284165865|ref|YP_003404144.1| - 6.5e-29 100.4 9.6 5.9e-11 42.6 2.0 4.5 4 1 0 4 4 3 3 PAS fold PAS PF00989.25 gi|284165865|ref|YP_003404144.1| - 7.8e-28 96.7 3.8 3.7e-10 39.8 0.0 4.9 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|284165865|ref|YP_003404144.1| - 1.6e-27 95.8 0.0 6.5e-11 42.4 0.0 4.1 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|284165865|ref|YP_003404144.1| - 8.8e-23 79.9 0.4 4.4e-10 39.4 0.0 4.3 3 0 0 3 3 3 3 PAS domain GAF_3 PF13492.6 gi|284165865|ref|YP_003404144.1| - 1e-14 55.0 0.0 5.8e-05 23.4 0.0 4.4 4 0 0 4 4 4 2 GAF domain PAS_3 PF08447.12 gi|284165865|ref|YP_003404144.1| - 3.6e-12 46.4 1.4 3e-05 24.2 0.0 5.1 5 1 0 5 5 4 2 PAS fold GAF PF01590.26 gi|284165865|ref|YP_003404144.1| - 5.1e-11 43.3 0.0 0.0006 20.4 0.0 3.3 3 0 0 3 3 2 2 GAF domain HisKA PF00512.25 gi|284165865|ref|YP_003404144.1| - 1.4e-08 34.6 0.0 1.4e-08 34.6 0.0 4.1 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|284165865|ref|YP_003404144.1| - 4.8e-08 33.4 0.8 0.031 14.6 0.0 4.1 4 0 0 4 4 4 2 GAF domain HATPase_c_5 PF14501.6 gi|284165865|ref|YP_003404144.1| - 0.0019 18.0 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain ATPase PF06745.13 gi|284165865|ref|YP_003404144.1| - 0.0027 17.1 0.1 0.014 14.8 0.0 2.2 2 0 0 2 2 2 1 KaiC Radical_SAM PF04055.21 gi|284165865|ref|YP_003404144.1| - 0.0094 16.3 2.2 3.1 8.1 0.0 4.2 5 0 0 5 5 5 1 Radical SAM superfamily HATPase_c_3 PF13589.6 gi|284165865|ref|YP_003404144.1| - 0.028 14.2 0.0 0.067 13.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MLTR_LBD PF17765.1 gi|284165865|ref|YP_003404144.1| - 0.26 11.4 0.0 0.26 11.4 0.0 3.5 6 0 0 6 6 4 0 MmyB-like transcription regulator ligand binding domain HhH-GPD PF00730.25 gi|284165866|ref|YP_003404145.1| - 9.2e-16 58.2 0.0 1.5e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|284165866|ref|YP_003404145.1| - 1.5e-06 28.3 7.9 3.2e-06 27.3 7.9 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|284165866|ref|YP_003404145.1| - 2e-05 24.2 0.0 5.3e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|284165866|ref|YP_003404145.1| - 0.021 15.4 0.1 0.072 13.7 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF3152 PF11350.8 gi|284165866|ref|YP_003404145.1| - 0.044 13.5 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3152) Mannosyl_trans4 PF15971.5 gi|284165867|ref|YP_003404146.1| - 1.4e-75 252.7 15.8 1.4e-75 252.7 15.8 1.9 2 0 0 2 2 2 1 DolP-mannose mannosyltransferase Phage_Coat_Gp8 PF05371.12 gi|284165867|ref|YP_003404146.1| - 0.038 13.8 0.4 0.12 12.1 0.4 1.9 1 0 0 1 1 1 0 Phage major coat protein, Gp8 KH_7 PF17214.3 gi|284165869|ref|YP_003404148.1| - 1.6e-33 114.5 0.6 7.9e-30 102.6 0.1 2.8 2 0 0 2 2 2 2 KH domain Beta-Casp PF10996.8 gi|284165869|ref|YP_003404148.1| - 2.3e-22 79.4 0.0 4.6e-22 78.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|284165869|ref|YP_003404148.1| - 1.1e-15 57.3 0.0 3.7e-15 55.6 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|284165869|ref|YP_003404148.1| - 2e-14 54.1 2.5 2e-14 54.1 2.5 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|284165869|ref|YP_003404148.1| - 1.7e-12 47.2 0.0 2.9e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284165869|ref|YP_003404148.1| - 9.9e-11 41.5 0.1 1.8e-10 40.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|284165869|ref|YP_003404148.1| - 2e-07 30.7 0.1 2e-06 27.5 0.0 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|284165869|ref|YP_003404148.1| - 0.00012 22.0 0.2 0.00028 20.8 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|284165869|ref|YP_003404148.1| - 0.022 14.6 0.1 0.054 13.4 0.1 1.6 1 0 0 1 1 1 0 KH domain KH_1 PF00013.29 gi|284165869|ref|YP_003404148.1| - 0.051 13.4 0.2 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 KH domain AAA_8 PF12780.7 gi|284165871|ref|YP_003404150.1| - 0.25 10.7 0.1 0.25 10.7 0.1 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 NucS PF01939.16 gi|284165872|ref|YP_003404151.1| - 4.8e-63 212.6 0.0 7.9e-62 208.6 0.0 1.9 1 1 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|284165872|ref|YP_003404151.1| - 0.0017 18.2 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DUF2766 PF10964.8 gi|284165873|ref|YP_003404152.1| - 0.027 14.5 0.3 0.048 13.6 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2766) DUF1859 PF08948.10 gi|284165873|ref|YP_003404152.1| - 0.11 12.4 0.1 0.26 11.2 0.0 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1859) MFS_1 PF07690.16 gi|284165874|ref|YP_003404153.1| - 7.2e-41 140.3 48.7 1.3e-37 129.6 44.4 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily DUF2749 PF10907.8 gi|284165874|ref|YP_003404153.1| - 1.2 9.3 0.0 1.2 9.3 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2749) EF1_GNE PF00736.19 gi|284165875|ref|YP_003404154.1| - 3.9e-18 65.4 0.0 4.3e-18 65.3 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|284165876|ref|YP_003404155.1| - 1.5e-06 28.1 11.4 5.5e-06 26.2 5.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-Mss51 PF13824.6 gi|284165876|ref|YP_003404155.1| - 0.00051 20.1 11.1 0.4 10.8 5.0 2.9 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 C1_2 PF03107.16 gi|284165876|ref|YP_003404155.1| - 0.001 19.3 11.1 0.036 14.4 0.5 2.2 1 1 1 2 2 2 2 C1 domain Rhodanese_C PF12368.8 gi|284165876|ref|YP_003404155.1| - 0.012 16.0 9.1 0.013 15.8 9.1 1.1 1 0 0 1 1 1 0 Rhodanase C-terminal zf-ACC PF17848.1 gi|284165876|ref|YP_003404155.1| - 0.014 15.5 0.2 0.014 15.5 0.2 3.8 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain UPF0547 PF10571.9 gi|284165876|ref|YP_003404155.1| - 0.021 14.9 2.6 0.29 11.2 0.2 3.5 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 gi|284165876|ref|YP_003404155.1| - 0.027 14.2 10.7 0.6 9.8 0.8 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|284165876|ref|YP_003404155.1| - 0.027 14.4 9.6 0.038 13.9 5.7 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|284165876|ref|YP_003404155.1| - 0.03 14.2 9.5 6.1 6.8 9.5 2.5 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-CHY PF05495.12 gi|284165876|ref|YP_003404155.1| - 0.031 14.8 10.7 0.31 11.6 7.4 2.0 1 1 1 2 2 2 0 CHY zinc finger HypA PF01155.19 gi|284165876|ref|YP_003404155.1| - 0.04 13.9 11.4 0.11 12.6 1.0 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HscB_4_cys PF18256.1 gi|284165876|ref|YP_003404155.1| - 0.066 13.0 1.4 0.066 13.0 1.4 2.9 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zinc_ribbon_2 PF13240.6 gi|284165876|ref|YP_003404155.1| - 0.084 12.6 14.3 0.38 10.5 2.4 3.8 2 2 0 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.13 gi|284165876|ref|YP_003404155.1| - 0.086 10.7 7.2 0.099 10.5 7.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.12 gi|284165876|ref|YP_003404155.1| - 0.14 12.1 11.0 11 6.1 8.7 2.1 1 1 0 1 1 1 0 zinc-ribbons zf-UBP PF02148.19 gi|284165876|ref|YP_003404155.1| - 0.17 12.2 1.2 0.17 12.2 1.2 2.3 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Zn_ribbon_SprT PF17283.2 gi|284165876|ref|YP_003404155.1| - 0.18 11.7 17.9 8 6.5 0.2 4.1 3 1 0 3 3 3 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|284165876|ref|YP_003404155.1| - 0.2 11.4 16.3 2 8.2 0.1 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|284165876|ref|YP_003404155.1| - 0.2 11.8 17.8 3.7 7.7 13.1 3.7 1 1 2 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284165876|ref|YP_003404155.1| - 0.26 10.7 16.2 0.95 9.0 4.6 3.8 3 1 0 3 3 3 0 zinc-ribbon domain NMD3 PF04981.13 gi|284165876|ref|YP_003404155.1| - 0.31 10.5 9.0 0.36 10.2 9.0 1.0 1 0 0 1 1 1 0 NMD3 family NMDAR2_C PF10565.9 gi|284165876|ref|YP_003404155.1| - 0.35 9.7 6.5 0.38 9.6 6.5 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus Nudix_N_2 PF14803.6 gi|284165876|ref|YP_003404155.1| - 0.43 10.5 13.1 1.6 8.7 0.1 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-C2HC5 PF06221.13 gi|284165876|ref|YP_003404155.1| - 0.47 10.5 10.0 0.22 11.5 4.7 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-HIT PF04438.16 gi|284165876|ref|YP_003404155.1| - 0.59 10.1 17.4 1.8 8.5 2.8 3.4 1 1 1 2 2 2 0 HIT zinc finger zf-MYND PF01753.18 gi|284165876|ref|YP_003404155.1| - 0.62 10.2 11.7 3.8 7.7 3.6 2.2 2 0 0 2 2 2 0 MYND finger zf_UBZ PF18439.1 gi|284165876|ref|YP_003404155.1| - 0.76 9.4 15.8 0.9 9.2 0.4 3.7 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger FYVE_2 PF02318.16 gi|284165876|ref|YP_003404155.1| - 0.94 9.7 6.4 1.1 9.5 6.4 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C2H2 PF00096.26 gi|284165876|ref|YP_003404155.1| - 0.99 10.0 15.9 3.5 8.3 0.7 3.7 4 0 0 4 4 4 0 Zinc finger, C2H2 type Zn_Tnp_IS91 PF14319.6 gi|284165876|ref|YP_003404155.1| - 1.1 9.3 10.7 2.9 8.0 10.7 1.8 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-UBR PF02207.20 gi|284165876|ref|YP_003404155.1| - 1.1 9.4 12.0 11 6.3 9.8 2.5 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zinc_ribbon_10 PF10058.9 gi|284165876|ref|YP_003404155.1| - 1.2 8.9 13.4 8.7 6.2 0.5 3.7 1 1 3 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-C2H2_11 PF16622.5 gi|284165876|ref|YP_003404155.1| - 1.5 8.7 9.2 10 6.0 0.1 3.8 4 0 0 4 4 4 0 zinc-finger C2H2-type Zn_Tnp_IS1595 PF12760.7 gi|284165876|ref|YP_003404155.1| - 1.5 8.8 18.1 7.8 6.6 8.4 3.5 2 1 2 4 4 4 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|284165876|ref|YP_003404155.1| - 2.2 8.2 16.7 4.7 7.1 0.7 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) DUF2387 PF09526.10 gi|284165876|ref|YP_003404155.1| - 2.3 8.5 10.2 3.6 7.8 0.1 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) A2L_zn_ribbon PF08792.10 gi|284165876|ref|YP_003404155.1| - 2.4 8.0 14.5 4.2 7.2 3.7 3.6 1 1 1 2 2 2 0 A2L zinc ribbon domain NRDD PF13597.6 gi|284165876|ref|YP_003404155.1| - 3 6.5 9.8 3.4 6.3 0.4 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase YhfH PF14149.6 gi|284165876|ref|YP_003404155.1| - 4.4 7.4 14.9 32 4.6 0.1 3.4 1 1 2 3 3 3 0 YhfH-like protein DUF2752 PF10825.8 gi|284165876|ref|YP_003404155.1| - 7.5 6.7 9.6 22 5.2 0.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) Desulfoferrod_N PF06397.12 gi|284165876|ref|YP_003404155.1| - 8.2 6.1 11.9 11 5.8 0.9 3.8 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain DNA_ligase_ZBD PF03119.16 gi|284165876|ref|YP_003404155.1| - 8.4 6.5 13.7 1.5 8.9 2.3 3.0 3 1 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nre_N PF04894.12 gi|284165877|ref|YP_003404156.1| - 2e-94 316.4 0.0 2.5e-94 316.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|284165877|ref|YP_003404156.1| - 4.6e-40 136.0 0.0 8.7e-40 135.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Sensor PF13796.6 gi|284165878|ref|YP_003404157.1| - 0.0077 16.3 1.0 0.0077 16.3 1.0 1.1 1 0 0 1 1 1 1 Putative sensor CrgA PF06781.12 gi|284165878|ref|YP_003404157.1| - 0.044 13.8 0.4 0.06 13.4 0.4 1.3 1 1 0 1 1 1 0 Cell division protein CrgA DUF2371 PF10177.9 gi|284165878|ref|YP_003404157.1| - 0.18 12.0 0.1 0.18 12.0 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Gram_pos_anchor PF00746.21 gi|284165878|ref|YP_003404157.1| - 3.3 7.7 5.3 1.7 8.7 2.8 1.8 1 1 1 2 2 2 0 LPXTG cell wall anchor motif DUF3040 PF11239.8 gi|284165878|ref|YP_003404157.1| - 5.4 7.4 11.9 8.7 6.7 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) Na_H_antiporter PF03553.14 gi|284165880|ref|YP_003404159.1| - 1.7e-61 208.1 38.2 2.3e-56 191.3 17.5 2.8 1 1 1 2 2 2 2 Na+/H+ antiporter family DUF3323 PF11796.8 gi|284165880|ref|YP_003404159.1| - 0.1 12.5 0.1 0.15 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminus (DUF3323) AI-2E_transport PF01594.16 gi|284165881|ref|YP_003404160.1| - 3.3e-46 157.9 24.8 4e-46 157.7 24.8 1.0 1 0 0 1 1 1 1 AI-2E family transporter DDDD PF10161.9 gi|284165881|ref|YP_003404160.1| - 2.3 8.1 4.4 1.9 8.3 0.2 2.8 2 0 0 2 2 2 0 Putative mitochondrial precursor protein DUF302 PF03625.14 gi|284165882|ref|YP_003404161.1| - 5.6e-17 61.4 0.0 1e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 CPBP PF02517.16 gi|284165883|ref|YP_003404162.1| - 3e-06 27.5 2.7 2e-05 24.8 2.7 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease UPF0259 PF06790.11 gi|284165886|ref|YP_003404165.1| - 0.0055 16.5 8.5 0.0078 16.0 8.5 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0259) DUF2561 PF10812.8 gi|284165886|ref|YP_003404165.1| - 0.011 15.8 0.4 0.011 15.8 0.4 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2561) PMT_4TMC PF16192.5 gi|284165886|ref|YP_003404165.1| - 1.4 8.5 4.2 3.8 7.1 4.2 1.7 1 1 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase YdjM PF04307.14 gi|284165887|ref|YP_003404166.1| - 2.9e-11 43.0 3.1 2.9e-10 39.7 3.1 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|284165887|ref|YP_003404166.1| - 0.31 11.0 1.0 1.5 8.8 1.0 1.9 1 1 0 1 1 1 0 Zinc dependent phospholipase C CinA PF02464.17 gi|284165888|ref|YP_003404167.1| - 7.3e-57 191.3 0.1 8.2e-57 191.1 0.1 1.0 1 0 0 1 1 1 1 Competence-damaged protein UPF0254 PF06787.11 gi|284165888|ref|YP_003404167.1| - 0.15 11.8 0.1 3.6 7.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) SnoaL_2 PF12680.7 gi|284165889|ref|YP_003404168.1| - 2e-19 70.1 1.7 2.4e-19 69.9 1.7 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|284165889|ref|YP_003404168.1| - 1.1e-11 44.7 0.7 1.9e-11 43.9 0.7 1.4 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase NTF2 PF02136.20 gi|284165889|ref|YP_003404168.1| - 7.6e-07 29.7 0.0 7.7e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_4 PF13577.6 gi|284165889|ref|YP_003404168.1| - 1.9e-05 24.8 0.4 2.2e-05 24.6 0.4 1.3 1 1 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 gi|284165889|ref|YP_003404168.1| - 0.00068 19.9 0.0 0.00082 19.6 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|284165889|ref|YP_003404168.1| - 0.0008 19.8 0.2 0.0012 19.3 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) Aminotran_1_2 PF00155.21 gi|284165890|ref|YP_003404169.1| - 4e-54 184.2 0.0 4.8e-54 183.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|284165890|ref|YP_003404169.1| - 8.8e-07 28.2 0.0 2.6e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|284165890|ref|YP_003404169.1| - 1.5e-05 24.4 0.0 2.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|284165890|ref|YP_003404169.1| - 0.0003 20.2 0.1 0.0005 19.5 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|284165890|ref|YP_003404169.1| - 0.0021 16.7 0.0 0.0028 16.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|284165890|ref|YP_003404169.1| - 0.0045 15.7 0.0 0.022 13.5 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-III DUF4127 PF13552.6 gi|284165890|ref|YP_003404169.1| - 0.09 11.4 0.1 0.13 10.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) Glyco_tranf_2_3 PF13641.6 gi|284165891|ref|YP_003404170.1| - 2.8e-05 24.1 1.6 0.00026 21.0 1.6 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 ArsA_ATPase PF02374.15 gi|284165892|ref|YP_003404171.1| - 4e-79 266.0 0.1 7.3e-53 179.7 0.1 2.3 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|284165892|ref|YP_003404171.1| - 5.5e-08 32.9 0.0 1.1e-07 32.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284165892|ref|YP_003404171.1| - 5.3e-05 23.2 0.0 0.00013 21.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|284165892|ref|YP_003404171.1| - 0.0028 17.1 1.6 0.019 14.5 0.1 2.4 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|284165892|ref|YP_003404171.1| - 0.0045 16.5 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|284165892|ref|YP_003404171.1| - 0.054 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|284165892|ref|YP_003404171.1| - 0.056 13.0 5.4 0.17 11.4 0.3 2.6 3 0 0 3 3 3 0 AAA domain Fer4_NifH PF00142.18 gi|284165892|ref|YP_003404171.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|284165892|ref|YP_003404171.1| - 0.19 11.3 0.1 0.91 9.1 0.2 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|284165892|ref|YP_003404171.1| - 0.21 10.9 0.0 0.44 9.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin FAD_binding_3 PF01494.19 gi|284165893|ref|YP_003404172.1| - 2.9e-08 33.3 0.0 2.2e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|284165893|ref|YP_003404172.1| - 0.0017 17.7 0.0 0.38 9.9 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|284165893|ref|YP_003404172.1| - 0.0018 17.4 0.0 0.0038 16.3 0.0 1.5 1 0 0 1 1 1 1 Squalene epoxidase Trp_halogenase PF04820.14 gi|284165893|ref|YP_003404172.1| - 0.0085 15.0 0.0 2.7 6.7 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|284165893|ref|YP_003404172.1| - 0.021 14.2 0.0 0.51 9.6 0.0 2.5 3 0 0 3 3 3 0 FAD dependent oxidoreductase DAO PF01266.24 gi|284165893|ref|YP_003404172.1| - 0.037 13.6 0.2 3.3 7.2 0.0 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|284165893|ref|YP_003404172.1| - 0.084 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GMC_oxred_N PF00732.19 gi|284165893|ref|YP_003404172.1| - 0.22 10.9 0.0 2.3 7.5 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase Usp PF00582.26 gi|284165894|ref|YP_003404173.1| - 8.4e-19 68.5 6.4 9.5e-19 68.3 6.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|284165894|ref|YP_003404173.1| - 0.093 12.2 2.8 0.42 10.0 3.1 1.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel WXG100 PF06013.12 gi|284165894|ref|YP_003404173.1| - 0.094 13.0 0.1 0.15 12.3 0.1 1.4 1 0 0 1 1 1 0 Proteins of 100 residues with WXG MFS_1 PF07690.16 gi|284165895|ref|YP_003404174.1| - 3.1e-35 121.8 56.0 3.2e-30 105.2 45.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3439 PF11921.8 gi|284165895|ref|YP_003404174.1| - 0.042 13.8 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) OATP PF03137.20 gi|284165895|ref|YP_003404174.1| - 0.54 8.5 9.0 0.27 9.5 0.3 2.7 1 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Tautomerase PF01361.21 gi|284165896|ref|YP_003404175.1| - 2.9e-09 36.7 0.0 0.00064 19.6 0.0 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|284165896|ref|YP_003404175.1| - 9.1e-06 25.7 0.0 0.011 15.8 0.0 2.1 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|284165896|ref|YP_003404175.1| - 0.022 15.0 0.0 0.079 13.2 0.0 1.6 1 1 1 2 2 2 0 Putative oxalocrotonate tautomerase enzyme Na_sulph_symp PF00939.19 gi|284165897|ref|YP_003404176.1| - 1.2e-89 301.6 28.9 1.5e-89 301.2 28.9 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|284165897|ref|YP_003404176.1| - 8e-44 150.0 27.8 8e-44 150.0 27.8 2.1 1 1 1 2 2 2 1 Citrate transporter DUF5337 PF17272.2 gi|284165897|ref|YP_003404176.1| - 0.0058 16.4 4.3 0.06 13.2 0.0 3.5 3 0 0 3 3 3 1 Family of unknown function (DUF5337) HTH_IclR PF09339.10 gi|284165898|ref|YP_003404177.1| - 4.9e-06 26.2 1.7 7.1e-06 25.7 1.7 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284165898|ref|YP_003404177.1| - 0.00022 21.0 0.4 0.00035 20.4 0.4 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284165898|ref|YP_003404177.1| - 0.00023 20.9 0.0 0.00032 20.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284165898|ref|YP_003404177.1| - 0.00043 19.8 0.0 0.00057 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284165898|ref|YP_003404177.1| - 0.00047 20.2 0.8 0.0007 19.6 0.8 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284165898|ref|YP_003404177.1| - 0.0018 18.2 0.0 0.0027 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284165898|ref|YP_003404177.1| - 0.0037 17.0 0.1 0.0044 16.7 0.1 1.1 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284165898|ref|YP_003404177.1| - 0.0061 16.7 0.0 0.0076 16.4 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|284165898|ref|YP_003404177.1| - 0.0067 16.8 0.0 0.0082 16.5 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|284165898|ref|YP_003404177.1| - 0.0076 16.2 0.0 0.0092 15.9 0.0 1.1 1 0 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.16 gi|284165898|ref|YP_003404177.1| - 0.014 15.2 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|284165898|ref|YP_003404177.1| - 0.015 15.3 0.1 0.018 15.0 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|284165898|ref|YP_003404177.1| - 0.023 14.5 0.9 0.033 14.0 0.9 1.2 1 0 0 1 1 1 0 Homeodomain-like domain HTH_42 PF06224.12 gi|284165898|ref|YP_003404177.1| - 0.028 14.0 0.9 0.033 13.7 0.9 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|284165898|ref|YP_003404177.1| - 0.041 13.7 0.4 0.084 12.7 0.3 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|284165898|ref|YP_003404177.1| - 0.059 13.5 0.5 0.08 13.1 0.5 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|284165898|ref|YP_003404177.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB adh_short PF00106.25 gi|284165899|ref|YP_003404178.1| - 1e-51 175.2 0.0 1.3e-51 174.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284165899|ref|YP_003404178.1| - 9.5e-43 146.4 0.0 1.3e-42 146.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284165899|ref|YP_003404178.1| - 1.2e-13 51.4 0.0 1.6e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|284165899|ref|YP_003404178.1| - 3.1e-13 50.0 0.5 1.3e-12 48.0 0.5 1.8 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|284165899|ref|YP_003404178.1| - 1.9e-07 30.8 0.0 3.1e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|284165899|ref|YP_003404178.1| - 2.4e-06 26.9 0.1 4.2e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.10 gi|284165899|ref|YP_003404178.1| - 7.9e-05 22.2 0.0 0.0002 20.8 0.0 1.5 1 1 0 2 2 2 1 Fungal family of unknown function (DUF1776) NmrA PF05368.13 gi|284165899|ref|YP_003404178.1| - 0.00011 21.9 0.1 0.00031 20.4 0.1 1.7 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|284165899|ref|YP_003404178.1| - 0.019 15.3 0.1 0.042 14.1 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Eno-Rase_NADH_b PF12242.8 gi|284165899|ref|YP_003404178.1| - 0.048 13.4 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Usp PF00582.26 gi|284165900|ref|YP_003404179.1| - 1.7e-23 83.7 13.7 7.7e-15 55.6 2.3 2.6 2 1 0 2 2 2 2 Universal stress protein family Ser_hydrolase PF06821.13 gi|284165900|ref|YP_003404179.1| - 0.13 12.2 1.6 0.2 11.5 0.2 2.0 2 1 1 3 3 3 0 Serine hydrolase Endonuclease_5 PF04493.14 gi|284165901|ref|YP_003404180.1| - 1.9e-53 181.1 0.0 2.4e-53 180.8 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|284165901|ref|YP_003404180.1| - 0.0027 17.2 0.2 0.45 9.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function DUF99 UvrC_HhH_N PF08459.11 gi|284165901|ref|YP_003404180.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal Acetyltransf_1 PF00583.25 gi|284165901|ref|YP_003404180.1| - 0.17 12.1 0.0 0.44 10.8 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family Rhomboid PF01694.22 gi|284165902|ref|YP_003404181.1| - 3.4e-30 105.0 13.2 3.4e-30 105.0 13.2 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|284165902|ref|YP_003404181.1| - 1.9e-12 47.1 8.0 2.7e-12 46.6 8.0 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|284165902|ref|YP_003404181.1| - 0.00015 22.2 1.8 0.00015 22.2 1.8 2.0 1 1 1 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.21 gi|284165902|ref|YP_003404181.1| - 0.054 13.6 1.4 0.076 13.2 1.4 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.16 gi|284165902|ref|YP_003404181.1| - 0.23 11.4 4.3 0.33 10.9 4.3 1.2 1 0 0 1 1 1 0 HIT zinc finger DNA_pol_B_thumb PF14791.6 gi|284165904|ref|YP_003404183.1| - 3.1e-24 84.9 0.0 9.1e-24 83.4 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|284165904|ref|YP_003404183.1| - 1.8e-20 73.1 5.5 2.5e-15 56.6 0.3 3.7 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|284165904|ref|YP_003404183.1| - 1e-19 70.8 2.7 8.2e-14 52.0 0.1 3.2 2 1 2 4 4 3 2 Helix-hairpin-helix domain PHP PF02811.19 gi|284165904|ref|YP_003404183.1| - 5e-09 36.7 0.0 8.3e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|284165904|ref|YP_003404183.1| - 6.8e-08 32.5 3.5 0.00069 19.7 0.0 3.2 3 0 0 3 3 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|284165904|ref|YP_003404183.1| - 4.8e-07 29.5 0.0 3.8e-06 26.6 0.0 2.5 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|284165904|ref|YP_003404183.1| - 1.6e-05 24.5 0.7 0.0019 18.0 0.1 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|284165904|ref|YP_003404183.1| - 7.9e-05 22.8 0.1 2.3 8.5 0.0 3.8 3 1 0 3 3 2 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|284165904|ref|YP_003404183.1| - 0.0011 19.2 0.0 0.0027 17.9 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm IMS_HHH PF11798.8 gi|284165904|ref|YP_003404183.1| - 0.0054 17.0 0.1 4.1 7.9 0.1 2.9 2 0 0 2 2 2 1 IMS family HHH motif Cdd1 PF11731.8 gi|284165904|ref|YP_003404183.1| - 0.0092 16.2 0.0 0.073 13.3 0.0 2.3 1 1 1 2 2 2 1 Pathogenicity locus 5_3_exonuc PF01367.20 gi|284165904|ref|YP_003404183.1| - 0.021 15.4 0.2 0.087 13.4 0.1 2.1 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Ribosomal_S13 PF00416.22 gi|284165904|ref|YP_003404183.1| - 0.084 13.3 2.9 1.3 9.4 0.1 3.3 2 1 1 3 3 3 0 Ribosomal protein S13/S18 RNA_pol_A_CTD PF03118.15 gi|284165904|ref|YP_003404183.1| - 0.098 12.4 0.2 0.23 11.2 0.2 1.6 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Mut7-C PF01927.16 gi|284165905|ref|YP_003404184.1| - 5.1e-38 130.5 0.1 5.6e-38 130.3 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|284165905|ref|YP_003404184.1| - 0.00026 20.7 0.0 0.00043 20.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF4379 PF14311.6 gi|284165905|ref|YP_003404184.1| - 0.025 15.0 0.5 0.047 14.1 0.5 1.5 1 0 0 1 1 1 0 Probable Zinc-ribbon domain DZR PF12773.7 gi|284165905|ref|YP_003404184.1| - 0.045 13.8 0.1 0.099 12.7 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon PIN_9 PF18477.1 gi|284165905|ref|YP_003404184.1| - 0.048 14.0 0.7 0.079 13.3 0.5 1.4 1 1 0 1 1 1 0 PIN like domain Zn-ribbon_8 PF09723.10 gi|284165905|ref|YP_003404184.1| - 0.1 12.7 0.4 20 5.4 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|284165905|ref|YP_003404184.1| - 0.27 11.2 2.9 1.3 9.0 2.8 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|284165905|ref|YP_003404184.1| - 1.3 9.6 4.0 16 6.1 0.3 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Dodecin PF07311.12 gi|284165906|ref|YP_003404185.1| - 2.6e-25 88.4 0.2 2.8e-25 88.3 0.2 1.0 1 0 0 1 1 1 1 Dodecin PHP_C PF13263.6 gi|284165907|ref|YP_003404186.1| - 2.1e-16 59.4 0.2 4.1e-16 58.5 0.2 1.5 1 0 0 1 1 1 1 PHP-associated Pyr_redox_dim PF02852.22 gi|284165907|ref|YP_003404186.1| - 0.062 13.6 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain zf-C2H2 PF00096.26 gi|284165909|ref|YP_003404188.1| - 0.00077 19.8 0.0 1.4 9.5 0.0 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|284165909|ref|YP_003404188.1| - 0.015 16.1 0.1 8.9 7.5 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger RepB_primase PF16793.5 gi|284165909|ref|YP_003404188.1| - 0.068 13.3 0.0 0.082 13.0 0.0 1.1 1 0 0 1 1 1 0 RepB DNA-primase from phage plasmid FOXP-CC PF16159.5 gi|284165909|ref|YP_003404188.1| - 0.08 13.6 0.3 0.99 10.1 0.1 2.1 1 1 1 2 2 2 0 FOXP coiled-coil domain Zn-ribbon_8 PF09723.10 gi|284165909|ref|YP_003404188.1| - 0.14 12.3 1.4 0.28 11.3 1.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF900 PF05990.12 gi|284165910|ref|YP_003404189.1| - 1.6e-07 31.1 0.0 2.5e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_8 PF06259.12 gi|284165910|ref|YP_003404189.1| - 0.0035 17.0 0.8 0.0077 15.9 0.3 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase PGAP1 PF07819.13 gi|284165910|ref|YP_003404189.1| - 0.0065 16.2 0.0 0.0094 15.7 0.0 1.3 1 0 0 1 1 1 1 PGAP1-like protein Hydrolase_4 PF12146.8 gi|284165910|ref|YP_003404189.1| - 0.0082 15.4 0.0 0.027 13.7 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Lipase_3 PF01764.25 gi|284165910|ref|YP_003404189.1| - 0.016 15.0 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) MBG_2 PF18676.1 gi|284165910|ref|YP_003404189.1| - 0.048 14.3 1.7 0.13 13.0 0.3 2.4 2 0 0 2 2 2 0 MBG domain (YGX type) DUF676 PF05057.14 gi|284165910|ref|YP_003404189.1| - 0.069 12.6 0.0 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 Putative serine esterase (DUF676) Esterase PF00756.20 gi|284165910|ref|YP_003404189.1| - 0.082 12.5 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Spt5-NGN PF03439.13 gi|284165911|ref|YP_003404190.1| - 6.3e-23 80.5 0.0 9.8e-23 79.9 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|284165911|ref|YP_003404190.1| - 6.7e-08 32.2 0.8 1.3e-07 31.3 0.3 1.8 2 0 0 2 2 2 1 KOW motif Glyco_hydro_65C PF03633.15 gi|284165911|ref|YP_003404190.1| - 0.1 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DbpA PF03880.15 gi|284165911|ref|YP_003404190.1| - 0.14 12.2 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 DbpA RNA binding domain SecE PF00584.20 gi|284165912|ref|YP_003404191.1| - 5.1e-05 23.1 0.3 6.3e-05 22.8 0.3 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Trypsin_2 PF13365.6 gi|284165914|ref|YP_003404193.1| - 5.2e-30 105.3 2.1 1.1e-29 104.3 2.1 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|284165914|ref|YP_003404193.1| - 7.6e-16 58.2 0.1 2e-15 56.8 0.1 1.8 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|284165914|ref|YP_003404193.1| - 7.4e-12 45.5 0.2 1.5e-11 44.6 0.2 1.5 1 1 0 1 1 1 1 Trypsin PDZ PF00595.24 gi|284165914|ref|YP_003404193.1| - 4.4e-06 26.9 0.2 2.6e-05 24.5 0.2 2.3 1 1 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|284165914|ref|YP_003404193.1| - 0.00065 19.5 0.9 0.00065 19.5 0.9 3.0 2 1 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 gi|284165914|ref|YP_003404193.1| - 0.014 15.3 0.2 0.083 12.9 0.1 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain UCR_Fe-S_N PF10399.9 gi|284165914|ref|YP_003404193.1| - 0.056 12.8 1.0 0.14 11.5 1.0 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Peptidase_S46 PF10459.9 gi|284165914|ref|YP_003404193.1| - 0.08 11.6 0.4 0.14 10.8 0.4 1.3 1 0 0 1 1 1 0 Peptidase S46 TAT_signal PF10518.9 gi|284165914|ref|YP_003404193.1| - 0.69 9.9 6.8 1.9 8.5 6.8 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aldolase PF01081.19 gi|284165915|ref|YP_003404194.1| - 1.9e-44 151.4 1.6 2.2e-44 151.2 1.6 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase PALB2_WD40 PF16756.5 gi|284165915|ref|YP_003404194.1| - 0.0071 15.3 0.0 0.01 14.8 0.0 1.2 1 0 0 1 1 1 1 Partner and localizer of BRCA2 WD40 domain DHO_dh PF01180.21 gi|284165915|ref|YP_003404194.1| - 0.46 9.6 6.0 4.8 6.3 0.8 2.9 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase Regulator_TrmB PF11495.8 gi|284165916|ref|YP_003404195.1| - 7.5e-58 195.5 0.0 1e-57 195.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|284165916|ref|YP_003404195.1| - 4.2e-16 58.6 0.1 8.8e-16 57.6 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284165916|ref|YP_003404195.1| - 0.0033 17.2 0.3 0.83 9.5 0.0 2.8 3 0 0 3 3 3 2 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|284165916|ref|YP_003404195.1| - 0.0058 16.9 0.0 0.044 14.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator MarR PF01047.22 gi|284165916|ref|YP_003404195.1| - 0.015 15.3 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|284165916|ref|YP_003404195.1| - 0.015 15.2 0.1 9.8 6.2 0.0 2.6 2 0 0 2 2 2 0 HTH domain MarR_2 PF12802.7 gi|284165916|ref|YP_003404195.1| - 0.022 14.6 0.0 0.057 13.3 0.0 1.7 1 0 0 1 1 1 0 MarR family GlcNAc_2-epim PF07221.11 gi|284165917|ref|YP_003404196.1| - 0.00019 20.8 0.6 0.00019 20.8 0.6 1.5 2 0 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_15 PF00723.21 gi|284165917|ref|YP_003404196.1| - 0.0033 16.3 0.0 0.077 11.8 0.1 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 15 TarH PF02203.15 gi|284165917|ref|YP_003404196.1| - 2.4 8.1 4.7 21 5.0 0.0 2.6 3 0 0 3 3 3 0 Tar ligand binding domain homologue ABC_tran PF00005.27 gi|284165918|ref|YP_003404197.1| - 7.9e-33 113.9 0.0 1.6e-32 112.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|284165918|ref|YP_003404197.1| - 8.5e-11 41.9 0.6 3e-10 40.1 0.3 2.2 3 0 0 3 3 2 1 TOBE domain TOBE PF03459.17 gi|284165918|ref|YP_003404197.1| - 3e-09 37.0 0.1 1.1e-08 35.2 0.1 2.1 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|284165918|ref|YP_003404197.1| - 8.2e-09 36.2 0.0 1.1e-07 32.6 0.0 2.7 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|284165918|ref|YP_003404197.1| - 2.3e-06 27.7 0.0 0.0096 15.8 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284165918|ref|YP_003404197.1| - 7.8e-05 22.2 0.1 0.00031 20.3 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|284165918|ref|YP_003404197.1| - 0.00047 20.7 0.0 0.0016 19.0 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|284165918|ref|YP_003404197.1| - 0.00087 19.7 0.2 0.0019 18.6 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284165918|ref|YP_003404197.1| - 0.00095 19.5 0.2 0.0016 18.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|284165918|ref|YP_003404197.1| - 0.0013 18.6 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|284165918|ref|YP_003404197.1| - 0.011 15.5 0.2 0.066 12.9 0.2 2.2 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|284165918|ref|YP_003404197.1| - 0.012 16.1 0.1 0.029 14.8 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrkA_C PF02080.21 gi|284165918|ref|YP_003404197.1| - 0.014 15.2 0.8 0.11 12.3 0.1 2.6 3 0 0 3 3 3 0 TrkA-C domain AAA_28 PF13521.6 gi|284165918|ref|YP_003404197.1| - 0.018 15.3 0.8 0.049 13.9 0.3 2.1 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|284165918|ref|YP_003404197.1| - 0.044 12.9 0.0 0.061 12.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit RsgA_GTPase PF03193.16 gi|284165918|ref|YP_003404197.1| - 0.061 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|284165918|ref|YP_003404197.1| - 0.084 12.4 0.0 0.67 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|284165918|ref|YP_003404197.1| - 0.09 12.4 0.1 0.23 11.1 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|284165918|ref|YP_003404197.1| - 0.099 12.8 0.0 0.22 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284165918|ref|YP_003404197.1| - 0.18 11.4 0.0 0.69 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain SBP_bac_8 PF13416.6 gi|284165919|ref|YP_003404198.1| - 2.9e-38 132.3 4.8 4.2e-38 131.8 4.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284165919|ref|YP_003404198.1| - 3.8e-22 79.6 5.7 5.1e-22 79.2 5.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284165919|ref|YP_003404198.1| - 0.16 11.9 0.2 0.3 11.0 0.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|284165920|ref|YP_003404199.1| - 2.1e-13 50.4 17.5 2.1e-13 50.4 17.5 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284165921|ref|YP_003404200.1| - 1.2e-17 64.2 17.5 1.5e-16 60.7 17.5 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Alpha-amylase PF00128.24 gi|284165922|ref|YP_003404201.1| - 1.2e-48 166.4 0.0 3.7e-47 161.5 0.0 2.3 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|284165922|ref|YP_003404201.1| - 1.7e-07 31.4 0.1 5.3e-07 29.9 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) PKD PF00801.20 gi|284165922|ref|YP_003404201.1| - 0.11 12.4 0.0 3 7.8 0.0 2.7 2 0 0 2 2 2 0 PKD domain Big_7 PF17957.1 gi|284165922|ref|YP_003404201.1| - 0.11 13.3 0.1 0.56 11.0 0.2 2.1 2 0 0 2 2 2 0 Bacterial Ig domain MR_MLE_C PF13378.6 gi|284165924|ref|YP_003404203.1| - 6.1e-59 199.2 1.8 8.5e-59 198.8 1.8 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284165924|ref|YP_003404203.1| - 6.4e-14 52.2 0.1 1.2e-13 51.3 0.1 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amidohydro_2 PF04909.14 gi|284165924|ref|YP_003404203.1| - 0.034 13.9 0.7 0.077 12.8 0.4 1.7 2 0 0 2 2 2 0 Amidohydrolase tRNA_SAD PF07973.14 gi|284165925|ref|YP_003404204.1| - 2.4e-13 50.0 0.1 3.8e-13 49.3 0.1 1.3 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|284165925|ref|YP_003404204.1| - 1.1e-05 24.2 0.0 1.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_19 PF12844.7 gi|284165926|ref|YP_003404205.1| - 0.0009 19.2 0.2 0.0014 18.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|284165926|ref|YP_003404205.1| - 0.0025 18.1 3.8 0.0025 18.1 3.8 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|284165926|ref|YP_003404205.1| - 0.027 14.6 1.3 0.047 13.8 1.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain HTH_3 PF01381.22 gi|284165926|ref|YP_003404205.1| - 0.047 13.8 2.0 0.15 12.1 2.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix PhnA_Zn_Ribbon PF08274.12 gi|284165926|ref|YP_003404205.1| - 0.062 13.3 1.2 0.16 12.0 1.2 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Chorion_3 PF05387.11 gi|284165926|ref|YP_003404205.1| - 0.29 10.7 4.0 0.45 10.1 4.0 1.2 1 0 0 1 1 1 0 Chorion family 3 DUF1451 PF07295.11 gi|284165926|ref|YP_003404205.1| - 0.51 10.4 2.4 0.26 11.3 0.3 1.5 2 0 0 2 2 2 0 Zinc-ribbon containing domain HTH_25 PF13413.6 gi|284165926|ref|YP_003404205.1| - 0.75 9.7 6.5 0.16 11.9 2.9 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF420 PF04238.12 gi|284165927|ref|YP_003404206.1| - 5.5e-36 123.8 6.7 5.5e-36 123.8 6.7 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|284165927|ref|YP_003404206.1| - 4.6e-05 23.7 3.0 4.6e-05 23.7 3.0 2.3 2 1 0 2 2 2 1 Predicted membrane protein (DUF2306) DUF1240 PF06836.12 gi|284165927|ref|YP_003404206.1| - 0.046 14.2 1.0 0.046 14.2 1.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) GATase_6 PF13522.6 gi|284165928|ref|YP_003404207.1| - 1.3e-19 70.7 0.0 2.6e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|284165928|ref|YP_003404207.1| - 4.5e-19 68.6 0.0 1e-18 67.4 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|284165928|ref|YP_003404207.1| - 4.8e-08 32.7 0.1 9.9e-08 31.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|284165928|ref|YP_003404207.1| - 0.0012 17.8 0.0 0.0028 16.6 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Na_sulph_symp PF00939.19 gi|284165929|ref|YP_003404208.1| - 1e-28 100.6 22.4 2e-28 99.7 22.4 1.3 1 1 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|284165929|ref|YP_003404208.1| - 2.8e-16 59.6 27.4 2.8e-16 59.6 27.4 1.7 2 0 0 2 2 2 1 Citrate transporter MutS_V PF00488.21 gi|284165930|ref|YP_003404209.1| - 1.3e-07 31.8 0.0 2.8e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 MutS domain V HHH_5 PF14520.6 gi|284165930|ref|YP_003404209.1| - 0.00078 20.0 3.8 0.64 10.7 0.4 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain AAA_21 PF13304.6 gi|284165930|ref|YP_003404209.1| - 0.013 15.3 0.0 0.036 13.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|284165930|ref|YP_003404209.1| - 0.04 14.2 0.0 0.04 14.2 0.0 3.4 3 2 1 4 4 4 0 AAA domain AAA_23 PF13476.6 gi|284165930|ref|YP_003404209.1| - 0.12 12.9 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF4404 PF14357.6 gi|284165930|ref|YP_003404209.1| - 0.59 10.8 2.8 38 5.0 0.1 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) MutS_III PF05192.18 gi|284165930|ref|YP_003404209.1| - 4.1 7.6 8.4 8.4 6.6 7.8 1.8 1 1 0 1 1 1 0 MutS domain III Zn-ribbon_8 PF09723.10 gi|284165932|ref|YP_003404211.1| - 0.00044 20.3 4.0 0.00099 19.2 4.0 1.6 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|284165932|ref|YP_003404211.1| - 0.00048 20.1 0.1 0.00049 20.1 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|284165932|ref|YP_003404211.1| - 0.00058 19.2 3.6 0.12 11.8 5.9 2.2 1 1 1 2 2 2 2 zinc-ribbon domain TackOD1 PF18551.1 gi|284165932|ref|YP_003404211.1| - 0.0006 19.5 0.0 0.00062 19.5 0.0 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DZR PF12773.7 gi|284165932|ref|YP_003404211.1| - 0.0012 18.8 0.4 0.0015 18.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|284165932|ref|YP_003404211.1| - 0.0015 18.4 2.2 0.0022 17.8 2.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|284165932|ref|YP_003404211.1| - 0.0019 18.1 0.7 0.13 12.2 0.0 2.2 2 0 0 2 2 2 1 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|284165932|ref|YP_003404211.1| - 0.0022 17.9 0.8 0.063 13.2 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|284165932|ref|YP_003404211.1| - 0.0097 15.9 0.4 0.011 15.7 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbons zinc_ribbon_15 PF17032.5 gi|284165932|ref|YP_003404211.1| - 0.018 15.8 0.4 0.02 15.7 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbon family zf-RING_7 PF02591.15 gi|284165932|ref|YP_003404211.1| - 0.021 15.0 2.4 0.4 10.9 0.0 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|284165932|ref|YP_003404211.1| - 0.023 14.4 0.1 0.34 10.7 0.0 2.0 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1610 PF07754.11 gi|284165932|ref|YP_003404211.1| - 0.028 14.4 2.1 0.68 10.0 0.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-C4_Topoisom PF01396.19 gi|284165932|ref|YP_003404211.1| - 0.033 14.0 1.1 4.4 7.2 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|284165932|ref|YP_003404211.1| - 0.035 13.6 4.3 0.16 11.5 0.2 2.1 1 1 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|284165932|ref|YP_003404211.1| - 0.043 13.9 2.0 1.1 9.3 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-H2C2_2 PF13465.6 gi|284165932|ref|YP_003404211.1| - 0.045 14.2 2.7 0.2 12.1 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.6 gi|284165932|ref|YP_003404211.1| - 0.047 14.5 1.8 0.25 12.3 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|284165932|ref|YP_003404211.1| - 0.065 13.0 4.3 0.13 12.0 4.3 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 gi|284165932|ref|YP_003404211.1| - 0.11 12.3 1.8 0.37 10.6 0.2 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2_6 PF13912.6 gi|284165932|ref|YP_003404211.1| - 0.14 12.2 1.5 0.62 10.1 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Mss51 PF13824.6 gi|284165932|ref|YP_003404211.1| - 0.17 12.0 0.2 0.17 12.0 0.2 1.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C6H2 PF15801.5 gi|284165932|ref|YP_003404211.1| - 0.21 11.9 2.0 7.6 6.9 2.9 2.0 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding Zn_ribbon_SprT PF17283.2 gi|284165932|ref|YP_003404211.1| - 0.34 10.9 4.8 2.2 8.3 4.8 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2H2 PF00096.26 gi|284165932|ref|YP_003404211.1| - 0.45 11.1 2.4 0.89 10.1 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_UBZ PF18439.1 gi|284165932|ref|YP_003404211.1| - 0.94 9.1 3.5 1.2 8.8 0.1 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_5 PF13719.6 gi|284165932|ref|YP_003404211.1| - 2.3 8.1 5.7 2.2 8.1 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|284165932|ref|YP_003404211.1| - 3.6 7.7 9.2 16 5.7 2.2 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 HAD_2 PF13419.6 gi|284165933|ref|YP_003404212.1| - 8e-16 58.6 0.0 1.1e-15 58.2 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284165933|ref|YP_003404212.1| - 2.7e-11 44.2 1.2 4.5e-11 43.4 1.2 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284165933|ref|YP_003404212.1| - 1.6e-06 28.1 0.0 3.9e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Polyketide_cyc2 PF10604.9 gi|284165934|ref|YP_003404213.1| - 3.3e-11 43.6 0.5 3.8e-11 43.4 0.5 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|284165934|ref|YP_003404213.1| - 0.002 18.3 0.0 0.0026 18.0 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.20 gi|284165934|ref|YP_003404213.1| - 0.0051 17.0 0.0 0.0062 16.7 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport peroxidase PF00141.23 gi|284165935|ref|YP_003404214.1| - 6.3e-87 291.0 0.0 2.4e-48 164.9 0.0 2.2 2 0 0 2 2 2 2 Peroxidase Amidohydro_1 PF01979.20 gi|284165936|ref|YP_003404215.1| - 2.5e-29 102.7 0.0 7e-20 71.6 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284165936|ref|YP_003404215.1| - 1.1e-06 28.4 3.2 3.3e-05 23.5 0.2 2.4 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|284165936|ref|YP_003404215.1| - 2e-06 27.4 0.0 2.9e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Usp PF00582.26 gi|284165937|ref|YP_003404216.1| - 1.4e-37 129.3 1.2 1.7e-37 129.1 1.2 1.1 1 0 0 1 1 1 1 Universal stress protein family BPL_C PF02237.17 gi|284165938|ref|YP_003404217.1| - 9.1e-15 54.3 0.5 1.6e-14 53.5 0.5 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain BPL_LplA_LipB PF03099.19 gi|284165938|ref|YP_003404217.1| - 1.4e-13 50.9 0.0 1.9e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|284165938|ref|YP_003404217.1| - 8.3e-13 48.1 0.0 1.5e-12 47.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|284165938|ref|YP_003404217.1| - 3.5e-07 30.2 0.0 7.6e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284165938|ref|YP_003404217.1| - 1.4e-05 24.8 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284165938|ref|YP_003404217.1| - 2.4e-05 23.8 0.0 5.6e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284165938|ref|YP_003404217.1| - 0.00091 19.0 1.0 0.003 17.4 0.1 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|284165938|ref|YP_003404217.1| - 0.0027 17.6 0.0 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_39 PF14090.6 gi|284165938|ref|YP_003404217.1| - 0.0096 15.7 0.0 0.022 14.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284165938|ref|YP_003404217.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|284165938|ref|YP_003404217.1| - 0.35 10.8 1.8 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family C1_1 PF00130.22 gi|284165939|ref|YP_003404218.1| - 0.0002 21.2 6.9 0.0002 21.2 6.9 1.9 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) PHD PF00628.29 gi|284165939|ref|YP_003404218.1| - 0.0003 20.6 11.0 0.00073 19.4 11.0 1.6 1 1 0 1 1 1 1 PHD-finger RNA_pol_N PF01194.17 gi|284165939|ref|YP_003404218.1| - 0.0071 16.6 3.1 0.033 14.5 0.5 2.1 2 0 0 2 2 2 1 RNA polymerases N / 8 kDa subunit Prok-RING_1 PF14446.6 gi|284165939|ref|YP_003404218.1| - 0.012 15.5 10.1 0.021 14.8 10.1 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_9 PF13901.6 gi|284165939|ref|YP_003404218.1| - 0.044 13.8 8.6 0.054 13.5 8.6 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon C1_2 PF03107.16 gi|284165939|ref|YP_003404218.1| - 0.084 13.2 9.7 0.15 12.4 3.4 2.1 1 1 1 2 2 2 0 C1 domain DNA_RNApol_7kD PF03604.13 gi|284165939|ref|YP_003404218.1| - 0.098 12.4 10.0 0.54 10.0 6.1 2.7 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf_UBZ PF18439.1 gi|284165939|ref|YP_003404218.1| - 0.1 12.2 11.4 2.4 7.8 1.0 3.1 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger Desulfoferrod_N PF06397.12 gi|284165939|ref|YP_003404218.1| - 0.15 11.7 0.3 0.15 11.7 0.3 2.3 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain ADD_ATRX PF17981.1 gi|284165939|ref|YP_003404218.1| - 0.2 11.6 0.1 0.2 11.6 0.1 2.7 1 1 2 3 3 3 0 Cysteine Rich ADD domain YhfH PF14149.6 gi|284165939|ref|YP_003404218.1| - 0.25 11.4 14.2 0.22 11.5 7.7 2.2 2 0 0 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.11 gi|284165939|ref|YP_003404218.1| - 0.59 10.1 11.7 0.72 9.8 1.0 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|284165939|ref|YP_003404218.1| - 1.4 8.9 10.9 1 9.4 6.0 1.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VESA1_N PF12785.7 gi|284165939|ref|YP_003404218.1| - 2.8 6.8 6.6 3 6.7 6.6 1.0 1 0 0 1 1 1 0 Variant erythrocyte surface antigen-1 zf-RING-like PF08746.11 gi|284165939|ref|YP_003404218.1| - 3 8.2 12.6 64 4.0 12.6 2.2 1 1 1 2 2 2 0 RING-like domain Anti-TRAP PF15777.5 gi|284165939|ref|YP_003404218.1| - 3.3 7.7 9.4 0.4 10.7 4.2 1.8 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein PHD_4 PF16866.5 gi|284165939|ref|YP_003404218.1| - 3.4 7.8 12.0 1.3e+02 2.7 12.0 2.4 1 1 0 1 1 1 0 PHD-finger PHD_2 PF13831.6 gi|284165939|ref|YP_003404218.1| - 6.8 6.3 13.3 0.48 10.0 5.7 2.5 2 1 0 2 2 2 0 PHD-finger PolC_DP2 PF03833.13 gi|284165939|ref|YP_003404218.1| - 9.3 4.0 6.6 10 3.8 6.6 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 BAT PF15915.5 gi|284165940|ref|YP_003404219.1| - 3.1e-33 114.9 7.4 5.6e-33 114.0 7.4 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284165940|ref|YP_003404219.1| - 1.9e-20 72.4 0.0 2.9e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284165940|ref|YP_003404219.1| - 0.0023 17.5 0.0 0.27 10.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284165940|ref|YP_003404219.1| - 0.0053 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|284165940|ref|YP_003404219.1| - 0.0093 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284165940|ref|YP_003404219.1| - 0.032 14.3 0.0 0.083 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|284165940|ref|YP_003404219.1| - 0.044 13.7 0.1 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|284165940|ref|YP_003404219.1| - 0.068 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding tRNA-synt_1b PF00579.25 gi|284165941|ref|YP_003404220.1| - 8.6e-49 166.4 0.0 1.2e-48 166.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF2156 PF09924.9 gi|284165941|ref|YP_003404220.1| - 0.054 12.5 0.3 0.17 10.9 0.2 1.6 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2156) tRNA-synt_1f PF01921.18 gi|284165941|ref|YP_003404220.1| - 0.072 12.0 0.0 9.6 5.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DNA_gyraseB_C PF00986.21 gi|284165941|ref|YP_003404220.1| - 0.14 12.3 0.2 0.32 11.2 0.2 1.5 1 0 0 1 1 1 0 DNA gyrase B subunit, carboxyl terminus HalOD1 PF18545.1 gi|284165942|ref|YP_003404221.1| - 2e-18 66.4 0.9 2.4e-18 66.2 0.9 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PPS_PS PF02006.16 gi|284165944|ref|YP_003404223.1| - 3.2e-76 254.8 2.4 4e-76 254.5 2.4 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase RTT107_BRCT_6 PF16771.5 gi|284165944|ref|YP_003404223.1| - 0.035 14.3 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain Methyltransf_25 PF13649.6 gi|284165945|ref|YP_003404224.1| - 2.6e-19 69.7 0.0 4.3e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284165945|ref|YP_003404224.1| - 2.2e-17 63.2 0.0 2.7e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284165945|ref|YP_003404224.1| - 1.2e-16 61.3 0.0 1.8e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284165945|ref|YP_003404224.1| - 3.1e-16 59.8 0.0 5.1e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284165945|ref|YP_003404224.1| - 8.8e-16 57.9 0.0 1.2e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|284165945|ref|YP_003404224.1| - 4.4e-12 46.2 0.0 6.2e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|284165945|ref|YP_003404224.1| - 1.2e-11 44.8 0.0 1.6e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|284165945|ref|YP_003404224.1| - 1.8e-05 24.2 0.0 2.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|284165945|ref|YP_003404224.1| - 0.00026 20.7 0.0 0.00034 20.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|284165945|ref|YP_003404224.1| - 0.00087 18.4 0.0 0.0011 18.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|284165945|ref|YP_003404224.1| - 0.0015 18.3 0.0 0.002 17.9 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltr_RsmB-F PF01189.17 gi|284165945|ref|YP_003404224.1| - 0.0058 16.3 0.0 0.0077 15.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_4 PF02390.17 gi|284165945|ref|YP_003404224.1| - 0.0059 16.1 0.0 0.0096 15.4 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_24 PF13578.6 gi|284165945|ref|YP_003404224.1| - 0.0066 17.4 0.0 0.014 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|284165945|ref|YP_003404224.1| - 0.0084 16.2 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|284165945|ref|YP_003404224.1| - 0.009 15.6 0.0 0.024 14.2 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|284165945|ref|YP_003404224.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.4 2 0 0 2 2 2 0 Hypothetical methyltransferase PrmA PF06325.13 gi|284165945|ref|YP_003404224.1| - 0.084 12.3 0.0 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF1508 PF07411.12 gi|284165946|ref|YP_003404225.1| - 8.7e-70 230.4 4.2 6.6e-09 35.5 0.0 13.0 13 0 0 13 13 13 11 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.6 gi|284165946|ref|YP_003404225.1| - 1.3e-07 31.9 6.5 2.1 8.6 0.0 8.0 7 1 2 9 9 9 2 DDE domain Nucleoporin2 PF04096.14 gi|284165946|ref|YP_003404225.1| - 0.002 18.2 0.4 42 4.2 0.0 4.6 4 1 1 5 5 5 0 Nucleoporin autopeptidase MalF_P2 PF14785.6 gi|284165946|ref|YP_003404225.1| - 0.012 15.7 0.0 13 5.8 0.0 3.9 4 2 1 5 5 5 0 Maltose transport system permease protein MalF P2 domain SPOR PF05036.13 gi|284165946|ref|YP_003404225.1| - 0.12 12.8 4.2 27 5.2 0.0 4.6 6 0 0 6 6 6 0 Sporulation related domain HlyIII PF03006.20 gi|284165946|ref|YP_003404225.1| - 0.4 10.4 2.1 0.63 9.7 2.1 1.2 1 0 0 1 1 1 0 Haemolysin-III related Stimulus_sens_1 PF13756.6 gi|284165946|ref|YP_003404225.1| - 0.74 10.4 4.6 1 9.9 0.0 3.8 5 1 0 5 5 5 0 Stimulus-sensing domain GHMP_kinases_N PF00288.26 gi|284165947|ref|YP_003404226.1| - 2.8e-11 43.5 1.0 6.3e-11 42.3 1.0 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain Abhydrolase_6 PF12697.7 gi|284165948|ref|YP_003404227.1| - 0.0001 23.0 0.1 0.00015 22.4 0.1 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family LCAT PF02450.15 gi|284165948|ref|YP_003404227.1| - 0.0086 15.3 0.0 0.011 14.9 0.0 1.1 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase DUF676 PF05057.14 gi|284165948|ref|YP_003404227.1| - 0.017 14.7 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Putative serine esterase (DUF676) Lipase PF00151.19 gi|284165948|ref|YP_003404227.1| - 0.019 14.3 0.0 0.025 13.9 0.0 1.1 1 0 0 1 1 1 0 Lipase TAT_signal PF10518.9 gi|284165948|ref|YP_003404227.1| - 1.1 9.2 9.6 3.8 7.5 9.6 2.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence tRNA-synt_2 PF00152.20 gi|284165949|ref|YP_003404228.1| - 1.3e-83 280.7 0.0 1.5e-83 280.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|284165949|ref|YP_003404228.1| - 1.2e-14 54.0 0.2 2.2e-14 53.2 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|284165949|ref|YP_003404228.1| - 0.0014 18.2 0.1 0.19 11.2 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) SIR2 PF02146.17 gi|284165950|ref|YP_003404229.1| - 5.3e-37 127.5 0.0 4.3e-18 65.9 0.0 2.1 2 0 0 2 2 2 2 Sir2 family PcrB PF01884.17 gi|284165951|ref|YP_003404230.1| - 9.3e-51 172.4 0.2 1.1e-50 172.2 0.2 1.0 1 0 0 1 1 1 1 PcrB family DUF3479 PF11965.8 gi|284165951|ref|YP_003404230.1| - 0.17 12.0 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3479) YtkA PF13115.6 gi|284165953|ref|YP_003404232.1| - 6e-16 58.8 0.3 9.7e-16 58.2 0.3 1.3 1 0 0 1 1 1 1 YtkA-like Filamin PF00630.19 gi|284165953|ref|YP_003404232.1| - 0.016 16.0 0.0 0.023 15.5 0.0 1.3 1 0 0 1 1 1 0 Filamin/ABP280 repeat PGF-CTERM PF18204.1 gi|284165953|ref|YP_003404232.1| - 0.17 11.9 5.7 0.37 10.8 5.7 1.6 1 0 0 1 1 1 0 PGF-CTERM motif Aminotran_4 PF01063.19 gi|284165954|ref|YP_003404233.1| - 3.5e-48 164.4 0.0 4.2e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV HTH_24 PF13412.6 gi|284165955|ref|YP_003404234.1| - 9.1e-11 41.1 0.2 5.4e-05 22.7 0.2 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284165955|ref|YP_003404234.1| - 6.1e-08 32.6 2.3 0.00013 21.9 0.3 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|284165955|ref|YP_003404234.1| - 7.9e-08 32.1 0.0 2.5e-06 27.3 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284165955|ref|YP_003404234.1| - 1.2e-05 25.0 2.0 0.02 14.8 0.2 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|284165955|ref|YP_003404234.1| - 0.00013 21.8 0.1 0.0004 20.2 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284165955|ref|YP_003404234.1| - 0.0097 15.7 0.1 0.029 14.2 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|284165955|ref|YP_003404234.1| - 0.018 14.7 0.0 1.7 8.2 0.0 2.3 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_10 PF04967.12 gi|284165955|ref|YP_003404234.1| - 0.018 14.8 0.0 0.049 13.4 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_7 PF02796.15 gi|284165955|ref|YP_003404234.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.19 gi|284165955|ref|YP_003404234.1| - 0.17 11.4 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family 7TMR-DISM_7TM PF07695.11 gi|284165956|ref|YP_003404235.1| - 0.0069 16.3 4.4 0.0081 16.1 4.4 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling CBAH PF02275.18 gi|284165956|ref|YP_003404235.1| - 0.14 11.7 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Linear amide C-N hydrolases, choloylglycine hydrolase family SUR7 PF06687.12 gi|284165956|ref|YP_003404235.1| - 0.3 10.7 4.7 0.38 10.3 4.7 1.2 1 1 0 1 1 1 0 SUR7/PalI family DUF3481 PF11980.8 gi|284165956|ref|YP_003404235.1| - 0.36 10.6 8.7 0.12 12.1 3.8 2.4 2 1 1 3 3 3 0 C-terminal domain of neuropilin glycoprotein DUF3995 PF13160.6 gi|284165956|ref|YP_003404235.1| - 1.3 9.4 9.6 4.2 7.7 9.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) SelR PF01641.18 gi|284165957|ref|YP_003404236.1| - 1.7e-54 183.1 0.0 1.9e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 SelR domain zinc_ribbon_10 PF10058.9 gi|284165957|ref|YP_003404236.1| - 0.029 14.1 0.6 2.5 7.9 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Yippee-Mis18 PF03226.14 gi|284165957|ref|YP_003404236.1| - 0.049 13.9 0.0 0.23 11.7 0.0 1.8 2 0 0 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly TF_Zn_Ribbon PF08271.12 gi|284165957|ref|YP_003404236.1| - 0.063 12.8 3.3 6.7 6.3 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding NinF PF05810.12 gi|284165957|ref|YP_003404236.1| - 0.11 12.3 0.0 8.2 6.4 0.0 2.3 2 0 0 2 2 2 0 NinF protein HECT_2 PF09814.9 gi|284165957|ref|YP_003404236.1| - 0.24 10.2 0.0 2 7.2 0.0 1.9 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding DUF2072 PF09845.9 gi|284165957|ref|YP_003404236.1| - 0.34 11.2 1.8 0.42 10.9 0.2 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|284165958|ref|YP_003404237.1| - 0.0036 17.4 1.6 0.0062 16.6 1.6 1.3 1 1 0 1 1 1 1 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|284165958|ref|YP_003404237.1| - 0.0069 16.1 3.1 0.19 11.5 0.3 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain zf-IS66 PF13005.7 gi|284165958|ref|YP_003404237.1| - 0.017 15.5 0.7 4.3 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 PADR1 PF08063.12 gi|284165958|ref|YP_003404237.1| - 0.023 14.5 0.2 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 PADR1 (NUC008) domain HypA PF01155.19 gi|284165958|ref|YP_003404237.1| - 0.033 14.2 0.1 0.035 14.1 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|284165958|ref|YP_003404237.1| - 0.074 12.8 1.0 5.3 6.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284165958|ref|YP_003404237.1| - 0.079 12.5 2.0 0.61 9.7 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|284165958|ref|YP_003404237.1| - 0.082 12.8 2.8 4.8 7.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2_3 PF13878.6 gi|284165958|ref|YP_003404237.1| - 0.1 12.5 0.8 7.8 6.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1 PF03811.13 gi|284165958|ref|YP_003404237.1| - 0.23 11.2 0.2 0.23 11.2 0.2 2.3 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_5 PF13719.6 gi|284165958|ref|YP_003404237.1| - 0.95 9.3 4.0 0.68 9.7 0.7 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Saccharop_dh_N PF04455.12 gi|284165960|ref|YP_003404239.1| - 1.6e-35 121.5 0.0 3.4e-35 120.5 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|284165960|ref|YP_003404239.1| - 0.0004 20.1 0.1 0.014 15.1 0.1 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|284165960|ref|YP_003404239.1| - 0.0042 16.4 0.0 0.051 12.8 0.0 2.2 1 1 1 2 2 2 1 Deoxyhypusine synthase PQQ_2 PF13360.6 gi|284165961|ref|YP_003404240.1| - 2.2e-30 106.0 2.9 3.9e-13 49.5 0.1 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|284165961|ref|YP_003404240.1| - 9.9e-20 70.4 15.4 3.1e-07 30.7 0.1 7.4 8 0 0 8 8 8 3 PQQ-like domain PQQ PF01011.21 gi|284165961|ref|YP_003404240.1| - 7.7e-14 50.9 6.5 0.003 17.4 0.0 7.5 7 0 0 7 7 7 4 PQQ enzyme repeat DUF5074 PF16819.5 gi|284165961|ref|YP_003404240.1| - 0.0066 16.5 1.0 6.2 6.9 0.0 3.9 4 0 0 4 4 4 1 Domain of unknown function (DUF5074) NHL PF01436.21 gi|284165961|ref|YP_003404240.1| - 0.07 13.2 3.6 1.4 9.1 0.2 3.6 3 0 0 3 3 3 0 NHL repeat Alginate_lyase2 PF08787.11 gi|284165961|ref|YP_003404240.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Alginate lyase CarboxypepD_reg PF13620.6 gi|284165962|ref|YP_003404241.1| - 4.2e-10 39.8 2.8 1.5e-05 25.2 0.0 3.0 1 1 1 2 2 2 2 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|284165962|ref|YP_003404241.1| - 2.3e-05 24.2 0.3 0.0088 15.9 0.1 2.8 2 0 0 2 2 2 2 PEGA domain Big_1 PF02369.16 gi|284165962|ref|YP_003404241.1| - 0.0018 18.3 4.7 0.18 11.8 0.8 3.0 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|284165962|ref|YP_003404241.1| - 0.089 12.9 0.0 6.9 6.9 0.0 2.7 2 0 0 2 2 2 0 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|284165962|ref|YP_003404241.1| - 0.21 11.9 3.2 3 8.2 0.0 3.5 3 0 0 3 3 3 0 Invasin, domain 3 Cadherin-like PF12733.7 gi|284165965|ref|YP_003404244.1| - 2.1 9.0 7.9 4.6 7.9 0.5 3.4 2 1 0 2 2 2 0 Cadherin-like beta sandwich domain BAT PF15915.5 gi|284165966|ref|YP_003404245.1| - 5.9e-48 162.7 10.6 5.9e-48 162.7 10.6 2.6 3 1 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284165966|ref|YP_003404245.1| - 4.3e-20 71.2 0.1 1e-19 70.1 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|284165966|ref|YP_003404245.1| - 1.6e-15 57.6 0.9 5.6e-15 55.8 0.9 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|284165966|ref|YP_003404245.1| - 9.8e-07 29.2 0.0 2.8e-06 27.7 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|284165966|ref|YP_003404245.1| - 3.4e-05 24.1 2.4 0.00024 21.3 0.2 3.1 2 1 0 2 2 2 1 PAS fold Sigma70_r4 PF04545.16 gi|284165966|ref|YP_003404245.1| - 4.3e-05 22.9 0.7 0.00021 20.7 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|284165966|ref|YP_003404245.1| - 0.002 18.1 0.0 0.0046 16.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain GAF PF01590.26 gi|284165966|ref|YP_003404245.1| - 0.0047 17.6 0.0 0.011 16.4 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|284165966|ref|YP_003404245.1| - 0.018 15.0 0.2 0.077 13.0 0.1 2.2 2 1 0 2 2 2 0 PAS fold DUF134 PF02001.16 gi|284165966|ref|YP_003404245.1| - 0.019 15.5 0.0 0.072 13.7 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function DUF134 UPF0122 PF04297.14 gi|284165966|ref|YP_003404245.1| - 0.02 15.1 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.19 gi|284165966|ref|YP_003404245.1| - 0.06 12.9 1.0 0.87 9.2 0.0 3.0 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family DUF1492 PF07374.11 gi|284165966|ref|YP_003404245.1| - 0.17 12.1 0.1 1.8 8.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) HTH_32 PF13565.6 gi|284165966|ref|YP_003404245.1| - 0.4 11.3 3.9 0.48 11.1 0.2 2.8 2 1 0 2 2 2 0 Homeodomain-like domain SQS_PSY PF00494.19 gi|284165967|ref|YP_003404246.1| - 3.2e-64 217.0 5.2 3.9e-64 216.7 5.2 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase MRAP PF15183.6 gi|284165968|ref|YP_003404247.1| - 0.14 12.1 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Melanocortin-2 receptor accessory protein family zf-C2H2_9 PF16293.5 gi|284165969|ref|YP_003404248.1| - 0.063 13.1 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger (1 copy) Caroten_synth PF04240.12 gi|284165970|ref|YP_003404249.1| - 2e-66 223.9 18.5 2.5e-66 223.5 18.5 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein YbhQ PF11076.8 gi|284165970|ref|YP_003404249.1| - 5.4 7.0 8.0 9.1 6.3 0.2 2.8 3 0 0 3 3 3 0 Putative inner membrane protein YbhQ UbiA PF01040.18 gi|284165971|ref|YP_003404250.1| - 3.4e-29 101.9 21.7 4.5e-29 101.5 21.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.24 gi|284165972|ref|YP_003404251.1| - 1.1e-32 114.0 0.0 1.2e-32 113.8 0.0 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|284165972|ref|YP_003404251.1| - 9.6e-17 61.0 0.1 2.9e-16 59.4 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|284165972|ref|YP_003404251.1| - 2.4e-09 37.3 8.4 8.7e-08 32.1 8.4 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284165972|ref|YP_003404251.1| - 5.3e-06 25.8 2.8 8.1e-06 25.2 2.8 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|284165972|ref|YP_003404251.1| - 6.3e-06 25.6 0.3 1.7e-05 24.2 0.4 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284165972|ref|YP_003404251.1| - 2.1e-05 24.1 0.0 3.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|284165972|ref|YP_003404251.1| - 0.0001 22.8 1.5 0.0003 21.3 0.4 2.3 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|284165972|ref|YP_003404251.1| - 0.00011 21.6 0.2 0.00017 21.0 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|284165972|ref|YP_003404251.1| - 0.00014 20.7 0.1 0.00075 18.3 1.2 1.6 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|284165972|ref|YP_003404251.1| - 0.0021 17.3 0.7 0.0037 16.5 0.7 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|284165972|ref|YP_003404251.1| - 0.0037 16.6 0.1 0.014 14.7 0.4 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284165972|ref|YP_003404251.1| - 0.0057 16.0 0.4 0.0089 15.3 0.4 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|284165972|ref|YP_003404251.1| - 0.013 15.1 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain GIDA PF01134.22 gi|284165972|ref|YP_003404251.1| - 0.018 14.2 1.6 0.026 13.6 1.6 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A MCRA PF06100.11 gi|284165972|ref|YP_003404251.1| - 0.019 13.8 0.0 0.024 13.5 0.0 1.1 1 0 0 1 1 1 0 MCRA family ApbA PF02558.16 gi|284165972|ref|YP_003404251.1| - 0.03 14.0 0.1 0.052 13.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284165972|ref|YP_003404251.1| - 0.057 13.3 0.4 0.093 12.6 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|284165972|ref|YP_003404251.1| - 0.058 13.8 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|284165972|ref|YP_003404251.1| - 0.38 10.3 0.6 0.63 9.6 0.6 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Form_Nir_trans PF01226.17 gi|284165973|ref|YP_003404252.1| - 1.2e-42 145.8 17.6 1.5e-42 145.5 17.6 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.26 gi|284165973|ref|YP_003404252.1| - 2.7e-19 70.1 14.4 2.4e-12 47.5 0.4 3.8 3 1 0 3 3 3 2 Universal stress protein family Radical_SAM PF04055.21 gi|284165974|ref|YP_003404253.1| - 4.3e-26 92.3 0.1 1.7e-25 90.3 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|284165974|ref|YP_003404253.1| - 5.6e-26 90.4 0.0 1.1e-25 89.4 0.0 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|284165974|ref|YP_003404253.1| - 9.1e-09 35.6 0.0 2.1e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284165974|ref|YP_003404253.1| - 1.2e-05 25.2 0.2 3.6e-05 23.7 0.2 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284165974|ref|YP_003404253.1| - 0.064 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain SHS2_FTSA PF02491.20 gi|284165974|ref|YP_003404253.1| - 0.14 12.6 0.0 0.36 11.3 0.0 1.7 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA TENA_THI-4 PF03070.16 gi|284165975|ref|YP_003404254.1| - 3e-49 167.7 2.8 3.6e-49 167.4 2.8 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Proton_antipo_M PF00361.20 gi|284165977|ref|YP_003404256.1| - 1.9e-69 234.1 15.7 1.9e-69 234.1 15.7 2.5 2 0 0 2 2 2 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|284165977|ref|YP_003404256.1| - 2.6e-15 56.3 11.5 2.6e-15 56.3 11.5 4.7 4 0 0 4 4 4 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|284165977|ref|YP_003404256.1| - 3.2e-11 43.1 2.4 6.3e-11 42.2 0.1 2.9 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MnhB PF04039.13 gi|284165978|ref|YP_003404257.1| - 3.6e-37 127.4 8.2 4.6e-37 127.1 8.2 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Phage_holin_3_6 PF07332.11 gi|284165978|ref|YP_003404257.1| - 3.8 7.6 10.9 25 4.9 0.1 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Oxidored_q2 PF00420.24 gi|284165979|ref|YP_003404258.1| - 5.1e-30 103.2 0.7 6.5e-30 102.9 0.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Phage_holin_2_3 PF16080.5 gi|284165979|ref|YP_003404258.1| - 0.17 11.7 0.7 8.1 6.3 0.1 2.4 2 0 0 2 2 2 0 Bacteriophage holin family HP1 TrbC PF04956.13 gi|284165979|ref|YP_003404258.1| - 2.2 8.6 7.9 1.7 8.9 4.4 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family Proton_antipo_M PF00361.20 gi|284165980|ref|YP_003404259.1| - 1.2e-49 169.1 17.6 2.7e-25 89.2 5.4 2.5 1 1 1 2 2 2 2 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|284165980|ref|YP_003404259.1| - 8.4e-05 22.0 17.3 0.00012 21.6 3.2 2.7 2 1 0 2 2 2 2 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|284165980|ref|YP_003404259.1| - 0.0023 17.9 0.1 0.0091 16.1 0.1 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MNHE PF01899.16 gi|284165981|ref|YP_003404260.1| - 1.5e-40 138.3 1.3 1.9e-40 138.0 1.3 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit MrpF_PhaF PF04066.13 gi|284165982|ref|YP_003404261.1| - 9.3e-18 64.4 10.4 9.3e-18 64.4 10.4 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF5336 PF17270.2 gi|284165982|ref|YP_003404261.1| - 0.025 14.2 4.9 0.026 14.2 4.9 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5336) IncF PF17626.2 gi|284165982|ref|YP_003404261.1| - 0.03 14.7 3.1 0.03 14.7 3.1 1.4 1 1 0 1 1 1 0 Inclusion membrane protein F Trp_oprn_chp PF09534.10 gi|284165982|ref|YP_003404261.1| - 2.4 7.9 13.2 1.3 8.8 5.0 2.0 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4006 PF13179.6 gi|284165982|ref|YP_003404261.1| - 2.6 8.0 4.5 4.2 7.3 3.8 1.7 1 1 1 2 2 2 0 Family of unknown function (DUF4006) PhaG_MnhG_YufB PF03334.14 gi|284165983|ref|YP_003404262.1| - 2.9e-25 88.3 8.3 3.4e-25 88.1 8.3 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit TarH PF02203.15 gi|284165983|ref|YP_003404262.1| - 1.3 9.0 5.0 0.1 12.5 0.7 1.4 2 0 0 2 2 2 0 Tar ligand binding domain homologue HTH_10 PF04967.12 gi|284165984|ref|YP_003404263.1| - 2.6e-15 55.9 0.0 4e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_37 PF13744.6 gi|284165984|ref|YP_003404263.1| - 0.0059 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284165984|ref|YP_003404263.1| - 0.0062 16.0 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284165984|ref|YP_003404263.1| - 0.042 13.7 0.1 0.077 12.9 0.1 1.4 1 0 0 1 1 1 0 MarR family Peptidase_S49 PF01343.18 gi|284165984|ref|YP_003404263.1| - 0.05 13.6 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S49 HTH_IclR PF09339.10 gi|284165984|ref|YP_003404263.1| - 0.096 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HalOD1 PF18545.1 gi|284165985|ref|YP_003404264.1| - 3.7e-19 68.8 0.1 4.4e-19 68.5 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 SHOCT PF09851.9 gi|284165986|ref|YP_003404265.1| - 3.5e-09 36.1 4.1 6.2e-09 35.3 4.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|284165986|ref|YP_003404265.1| - 0.00077 19.5 7.5 0.00077 19.5 7.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) DUF3099 PF11298.8 gi|284165986|ref|YP_003404265.1| - 0.023 14.8 0.3 0.047 13.8 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) GvpG PF05120.12 gi|284165986|ref|YP_003404265.1| - 0.059 13.4 1.7 0.089 12.8 1.7 1.3 1 0 0 1 1 1 0 Gas vesicle protein G tRNA_anti-codon PF01336.25 gi|284165987|ref|YP_003404266.1| - 1.4e-10 41.0 0.1 3.5e-10 39.7 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|284165987|ref|YP_003404266.1| - 2.5e-08 34.1 0.0 8.2e-08 32.5 0.0 2.0 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|284165987|ref|YP_003404266.1| - 9.2e-06 25.8 0.0 2.6e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PHP PF02811.19 gi|284165987|ref|YP_003404266.1| - 0.058 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 PHP domain S1_2 PF13509.6 gi|284165987|ref|YP_003404266.1| - 0.06 13.4 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 S1 domain AF-4 PF05110.13 gi|284165987|ref|YP_003404266.1| - 0.6 8.1 6.0 0.77 7.8 6.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Thiolase_N PF00108.23 gi|284165988|ref|YP_003404267.1| - 1.1e-53 182.3 0.0 1.4e-53 181.9 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284165988|ref|YP_003404267.1| - 2.2e-09 37.0 0.1 4.6e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284165988|ref|YP_003404267.1| - 2.5e-05 24.0 5.2 4.6e-05 23.1 4.1 1.8 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|284165988|ref|YP_003404267.1| - 0.021 14.9 1.8 2.3 8.3 0.0 3.1 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain HTH_15 PF12324.8 gi|284165988|ref|YP_003404267.1| - 0.077 13.0 0.1 0.23 11.4 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase EspB PF05802.11 gi|284165988|ref|YP_003404267.1| - 2.1 8.3 5.3 5.2 7.0 0.9 2.2 2 0 0 2 2 2 0 Enterobacterial EspB protein ADH_zinc_N PF00107.26 gi|284165989|ref|YP_003404268.1| - 2.8e-28 98.5 0.3 4.4e-28 97.8 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284165989|ref|YP_003404268.1| - 3.5e-25 89.6 0.0 6.4e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284165989|ref|YP_003404268.1| - 1.7e-07 31.1 0.0 1.1e-06 28.5 0.0 2.1 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|284165989|ref|YP_003404268.1| - 0.00076 18.8 1.2 0.0014 18.0 1.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|284165989|ref|YP_003404268.1| - 0.043 13.3 1.6 0.07 12.6 1.6 1.4 1 0 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284165989|ref|YP_003404268.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA_anti-codon PF01336.25 gi|284165990|ref|YP_003404269.1| - 0.09 12.8 0.1 0.14 12.2 0.1 1.6 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Lactamase_B_3 PF13483.6 gi|284165991|ref|YP_003404270.1| - 2.8e-20 72.9 0.2 3.5e-20 72.5 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284165991|ref|YP_003404270.1| - 8.9e-17 61.3 0.5 1.1e-16 60.9 0.5 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284165991|ref|YP_003404270.1| - 6.6e-10 39.3 3.6 3.4e-09 37.0 1.7 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Ribosomal_L12_N PF16320.5 gi|284165991|ref|YP_003404270.1| - 0.013 15.2 0.0 0.013 15.2 0.0 1.8 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain YdjM PF04307.14 gi|284165992|ref|YP_003404271.1| - 1.8e-11 43.6 12.4 2.6e-11 43.1 12.4 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase SieB PF14163.6 gi|284165992|ref|YP_003404271.1| - 0.4 10.2 1.3 1.8 8.0 0.1 2.1 1 1 1 2 2 2 0 Super-infection exclusion protein B OsmC PF02566.19 gi|284165993|ref|YP_003404272.1| - 3e-10 40.5 0.0 4e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein Lactamase_B PF00753.27 gi|284165994|ref|YP_003404273.1| - 6.6e-13 49.1 11.8 6.6e-13 49.1 11.8 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284165994|ref|YP_003404273.1| - 7e-06 25.7 0.1 1e-05 25.1 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|284165994|ref|YP_003404273.1| - 0.0053 16.2 0.0 0.011 15.1 0.0 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|284165994|ref|YP_003404273.1| - 0.095 12.6 0.9 0.27 11.1 0.9 2.1 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF3006 PF11213.8 gi|284165995|ref|YP_003404274.1| - 4e-12 46.2 9.7 1.7e-10 41.0 9.7 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) Hexapep PF00132.24 gi|284165996|ref|YP_003404275.1| - 6.3e-15 54.2 3.7 6.8e-07 28.8 1.0 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284165996|ref|YP_003404275.1| - 6.5e-07 29.0 6.0 8e-07 28.7 0.7 3.0 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|284165996|ref|YP_003404275.1| - 0.24 10.3 0.0 0.59 9.0 0.0 1.6 1 1 0 1 1 1 0 L-fucokinase VAPB_antitox PF02697.14 gi|284165999|ref|YP_003404278.1| - 0.0017 19.1 0.9 0.0018 19.0 0.9 1.0 1 0 0 1 1 1 1 Putative antitoxin DUF4806 PF16064.5 gi|284165999|ref|YP_003404278.1| - 0.067 13.5 0.4 0.077 13.3 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4806) RHH_1 PF01402.21 gi|284165999|ref|YP_003404278.1| - 0.17 11.9 2.5 1.2 9.2 1.1 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family Big_1 PF02369.16 gi|284166001|ref|YP_003404280.1| - 0.011 15.7 0.2 0.011 15.7 0.2 7.5 7 1 2 9 9 9 0 Bacterial Ig-like domain (group 1) SNARE PF05739.19 gi|284166001|ref|YP_003404280.1| - 0.2 11.7 2.2 0.7 9.9 0.8 2.7 2 0 0 2 2 2 0 SNARE domain PAS_7 PF12860.7 gi|284166001|ref|YP_003404280.1| - 0.22 11.7 1.9 0.68 10.1 0.0 2.8 2 1 0 2 2 2 0 PAS fold DUF2808 PF10989.8 gi|284166001|ref|YP_003404280.1| - 0.36 10.8 4.9 24 4.9 0.0 4.9 4 1 0 5 5 5 0 Protein of unknown function (DUF2808) Fn3-like PF14310.6 gi|284166001|ref|YP_003404280.1| - 3.1 8.0 6.9 7.4 6.8 0.1 4.6 5 1 0 5 5 5 0 Fibronectin type III-like domain BioY PF02632.14 gi|284166002|ref|YP_003404281.1| - 6.1e-37 126.7 17.0 1e-36 126.0 17.0 1.3 1 0 0 1 1 1 1 BioY family ECF_trnsprt PF12822.7 gi|284166002|ref|YP_003404281.1| - 8.9e-05 22.6 15.8 0.00013 22.1 15.8 1.3 1 0 0 1 1 1 1 ECF transporter, substrate-specific component ECF-ribofla_trS PF07155.12 gi|284166002|ref|YP_003404281.1| - 0.0019 18.2 14.0 0.045 13.8 14.0 2.3 1 1 0 1 1 1 1 ECF-type riboflavin transporter, S component DUF2269 PF10027.9 gi|284166002|ref|YP_003404281.1| - 0.011 15.8 1.0 0.011 15.8 1.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ABC_tran PF00005.27 gi|284166003|ref|YP_003404282.1| - 5.6e-30 104.6 0.0 7.4e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166003|ref|YP_003404282.1| - 3.9e-11 43.3 0.5 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284166003|ref|YP_003404282.1| - 5.9e-06 25.9 0.0 4.2e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284166003|ref|YP_003404282.1| - 0.00015 22.2 0.6 0.00023 21.6 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|284166003|ref|YP_003404282.1| - 0.0011 19.1 0.1 0.011 16.0 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|284166003|ref|YP_003404282.1| - 0.0025 17.5 0.1 0.0047 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|284166003|ref|YP_003404282.1| - 0.0055 16.3 1.5 0.036 13.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284166003|ref|YP_003404282.1| - 0.01 16.4 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|284166003|ref|YP_003404282.1| - 0.017 14.8 0.1 0.033 13.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|284166003|ref|YP_003404282.1| - 0.026 13.8 0.0 0.043 13.1 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|284166003|ref|YP_003404282.1| - 0.028 14.3 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|284166003|ref|YP_003404282.1| - 0.034 13.7 0.1 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|284166003|ref|YP_003404282.1| - 0.045 14.0 0.3 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|284166003|ref|YP_003404282.1| - 0.11 12.7 0.3 0.15 12.3 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284166003|ref|YP_003404282.1| - 0.11 12.8 0.3 0.22 11.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|284166003|ref|YP_003404282.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.8 gi|284166003|ref|YP_003404282.1| - 0.18 9.3 0.1 0.25 8.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|284166003|ref|YP_003404282.1| - 0.33 9.5 0.0 4.1 5.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain CbiQ PF02361.16 gi|284166004|ref|YP_003404283.1| - 6.7e-17 61.8 7.7 1.2e-16 61.0 7.7 1.4 1 1 0 1 1 1 1 Cobalt transport protein PSI_PsaJ PF01701.18 gi|284166004|ref|YP_003404283.1| - 1.1 9.8 6.8 0.21 12.1 1.1 2.7 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ Pyr_redox_2 PF07992.14 gi|284166005|ref|YP_003404284.1| - 4.3e-50 170.6 1.8 6.6e-50 170.0 1.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|284166005|ref|YP_003404284.1| - 3.1e-22 78.9 0.1 5.4e-22 78.1 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|284166005|ref|YP_003404284.1| - 4.5e-19 68.8 0.1 2.4e-15 56.8 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284166005|ref|YP_003404284.1| - 1.7e-06 27.5 0.0 0.0015 17.9 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|284166005|ref|YP_003404284.1| - 9.3e-05 21.7 0.0 0.00038 19.7 0.0 1.9 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|284166005|ref|YP_003404284.1| - 0.0025 17.0 0.6 0.0025 17.0 0.6 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284166005|ref|YP_003404284.1| - 0.029 14.6 0.5 0.46 10.7 0.2 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284166005|ref|YP_003404284.1| - 0.033 13.5 0.2 0.045 13.1 0.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|284166005|ref|YP_003404284.1| - 0.064 13.1 0.1 1.2 9.0 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DrsE PF02635.15 gi|284166006|ref|YP_003404285.1| - 9.9e-06 25.9 0.1 1.1e-05 25.8 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family TAT_signal PF10518.9 gi|284166007|ref|YP_003404286.1| - 1.5 8.8 8.3 2.7 8.0 8.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_15 PF00723.21 gi|284166008|ref|YP_003404287.1| - 2.9e-52 178.0 0.0 1.5e-46 159.2 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Peptidase_S80 PF07230.11 gi|284166008|ref|YP_003404287.1| - 0.21 9.8 0.0 0.32 9.2 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage T4-like capsid assembly protein (Gp20) TrmB PF01978.19 gi|284166009|ref|YP_003404288.1| - 2.2e-08 33.9 0.0 3.6e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284166009|ref|YP_003404288.1| - 1e-06 28.6 0.0 1.6e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284166009|ref|YP_003404288.1| - 3.5e-06 26.5 0.0 5.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284166009|ref|YP_003404288.1| - 1e-05 25.3 0.1 1.6e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284166009|ref|YP_003404288.1| - 1.1e-05 25.2 0.1 2.3e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284166009|ref|YP_003404288.1| - 0.00016 21.4 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284166009|ref|YP_003404288.1| - 0.00075 19.5 0.4 0.0017 18.3 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284166009|ref|YP_003404288.1| - 0.002 18.0 0.1 0.0034 17.3 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|284166009|ref|YP_003404288.1| - 0.0029 17.5 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain Desulfoferrod_N PF06397.12 gi|284166009|ref|YP_003404288.1| - 0.0082 15.8 3.7 0.0082 15.8 3.7 2.2 2 1 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain GntR PF00392.21 gi|284166009|ref|YP_003404288.1| - 0.033 13.8 0.2 0.071 12.8 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|284166009|ref|YP_003404288.1| - 0.066 13.1 0.2 0.12 12.3 0.2 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|284166009|ref|YP_003404288.1| - 0.14 12.6 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Pyr_redox_2 PF07992.14 gi|284166010|ref|YP_003404289.1| - 1.5e-53 182.0 1.3 1.5e-53 182.0 1.3 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284166010|ref|YP_003404289.1| - 1.5e-18 67.1 1.4 8.5e-15 55.1 0.1 3.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284166010|ref|YP_003404289.1| - 1.8e-09 37.3 0.1 0.0034 16.7 0.0 3.4 2 2 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284166010|ref|YP_003404289.1| - 3e-09 37.0 6.2 0.0005 20.3 0.1 2.9 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Pyr_redox_dim PF02852.22 gi|284166010|ref|YP_003404289.1| - 3.5e-09 36.9 0.0 8.3e-09 35.7 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|284166010|ref|YP_003404289.1| - 6.5e-07 29.3 3.0 0.011 15.3 0.2 3.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|284166010|ref|YP_003404289.1| - 4.9e-05 23.3 1.6 7.6e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|284166010|ref|YP_003404289.1| - 0.00025 19.9 0.1 0.24 10.1 0.0 3.2 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|284166010|ref|YP_003404289.1| - 0.00076 18.8 0.1 0.068 12.4 0.0 2.3 2 0 0 2 2 2 1 Thi4 family NAD_binding_2 PF03446.15 gi|284166010|ref|YP_003404289.1| - 0.0015 18.7 0.1 0.0046 17.1 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|284166010|ref|YP_003404289.1| - 0.0039 16.5 6.5 0.26 10.6 0.7 3.2 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|284166010|ref|YP_003404289.1| - 0.004 17.2 0.4 4.9 7.1 0.0 3.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|284166010|ref|YP_003404289.1| - 0.0052 16.2 0.0 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|284166010|ref|YP_003404289.1| - 0.0087 16.5 0.4 0.48 10.9 0.1 2.7 3 0 0 3 3 3 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|284166010|ref|YP_003404289.1| - 0.0095 15.0 2.1 1.3 8.0 0.0 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|284166010|ref|YP_003404289.1| - 0.015 14.9 0.8 0.058 13.0 0.3 2.2 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amino_oxidase PF01593.24 gi|284166010|ref|YP_003404289.1| - 0.019 14.3 0.1 0.17 11.1 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|284166010|ref|YP_003404289.1| - 0.022 14.8 0.0 0.09 12.7 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|284166010|ref|YP_003404289.1| - 0.069 13.4 0.5 2.1 8.7 0.1 3.0 3 1 0 3 3 3 0 TrkA-N domain DpaA_N PF16924.5 gi|284166010|ref|YP_003404289.1| - 0.079 13.1 0.3 5.2 7.2 0.0 3.1 3 0 0 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain GIDA PF01134.22 gi|284166010|ref|YP_003404289.1| - 2.6 7.0 9.1 0.18 10.9 0.1 2.6 3 0 0 3 3 3 0 Glucose inhibited division protein A adh_short_C2 PF13561.6 gi|284166011|ref|YP_003404290.1| - 1.3e-63 214.7 1.8 1.6e-63 214.4 1.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284166011|ref|YP_003404290.1| - 6.3e-59 198.7 0.3 7.8e-59 198.4 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284166011|ref|YP_003404290.1| - 3.2e-24 85.8 0.2 4.1e-24 85.5 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284166011|ref|YP_003404290.1| - 3.4e-05 23.4 0.2 4.3e-05 23.1 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|284166011|ref|YP_003404290.1| - 0.023 14.9 0.6 0.034 14.4 0.1 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain THF_DHG_CYH_C PF02882.19 gi|284166011|ref|YP_003404290.1| - 0.026 13.9 0.0 0.058 12.7 0.0 1.5 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.15 gi|284166011|ref|YP_003404290.1| - 0.057 12.5 0.0 0.079 12.1 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein TrmB PF01978.19 gi|284166013|ref|YP_003404292.1| - 2.2e-05 24.2 0.1 2.6e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284166013|ref|YP_003404292.1| - 0.049 13.6 0.1 0.064 13.2 0.1 1.2 1 0 0 1 1 1 0 MarR family NikR_C PF08753.11 gi|284166014|ref|YP_003404293.1| - 4.7e-19 68.3 1.4 5.1e-19 68.2 0.3 1.6 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|284166014|ref|YP_003404293.1| - 4.8e-05 23.1 0.0 0.00011 22.0 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|284166014|ref|YP_003404293.1| - 0.014 15.3 0.0 0.075 13.0 0.0 2.0 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Methyltransf_25 PF13649.6 gi|284166014|ref|YP_003404293.1| - 0.06 14.1 0.2 0.11 13.2 0.1 1.5 1 1 1 2 2 2 0 Methyltransferase domain TerC PF03741.16 gi|284166015|ref|YP_003404294.1| - 9.1e-05 22.2 1.9 0.0075 16.0 0.0 2.2 2 0 0 2 2 2 2 Integral membrane protein TerC family Trp_oprn_chp PF09534.10 gi|284166015|ref|YP_003404294.1| - 0.0044 16.8 0.0 0.016 15.0 0.0 2.1 1 1 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PEMT PF04191.13 gi|284166015|ref|YP_003404294.1| - 0.66 10.4 5.2 0.61 10.5 1.2 2.6 2 0 0 2 2 2 0 Phospholipid methyltransferase DUF4199 PF13858.6 gi|284166015|ref|YP_003404294.1| - 1.8 8.9 12.3 2.2 8.7 2.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) Met_10 PF02475.16 gi|284166016|ref|YP_003404295.1| - 6.3e-58 195.8 0.0 7.9e-58 195.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|284166016|ref|YP_003404295.1| - 2e-12 46.8 0.0 5.1e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|284166016|ref|YP_003404295.1| - 3.2e-08 34.2 0.0 8.5e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|284166016|ref|YP_003404295.1| - 1.3e-06 28.1 0.0 1.9e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|284166016|ref|YP_003404295.1| - 5.3e-06 26.1 0.0 8.3e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|284166016|ref|YP_003404295.1| - 3.1e-05 23.5 0.0 5.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|284166016|ref|YP_003404295.1| - 4.5e-05 23.3 0.0 7.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|284166016|ref|YP_003404295.1| - 9.1e-05 22.2 0.0 0.00015 21.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|284166016|ref|YP_003404295.1| - 0.00024 21.7 0.0 0.00057 20.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|284166016|ref|YP_003404295.1| - 0.00037 20.2 0.0 0.00077 19.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.6 gi|284166016|ref|YP_003404295.1| - 0.0013 19.7 0.0 0.0038 18.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|284166016|ref|YP_003404295.1| - 0.0014 17.9 0.0 0.0021 17.3 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_23 PF13489.6 gi|284166016|ref|YP_003404295.1| - 0.0083 16.0 0.0 0.036 13.9 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|284166016|ref|YP_003404295.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|284166016|ref|YP_003404295.1| - 0.029 15.1 0.0 0.1 13.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain DNA_methylase PF00145.17 gi|284166016|ref|YP_003404295.1| - 0.086 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase N6_N4_Mtase PF01555.18 gi|284166016|ref|YP_003404295.1| - 0.15 11.8 0.0 0.47 10.1 0.0 1.7 2 0 0 2 2 2 0 DNA methylase Methyltransf_18 PF12847.7 gi|284166016|ref|YP_003404295.1| - 0.21 11.5 0.0 0.45 10.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain SRP54_N PF02881.19 gi|284166016|ref|YP_003404295.1| - 0.49 10.7 2.4 9.6 6.5 0.3 2.4 2 0 0 2 2 2 0 SRP54-type protein, helical bundle domain Rieske PF00355.26 gi|284166017|ref|YP_003404296.1| - 2.3e-08 33.9 0.1 3.2e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TP_methylase PF00590.20 gi|284166019|ref|YP_003404298.1| - 3.3e-22 79.5 2.8 4.2e-22 79.1 2.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases EI24 PF07264.11 gi|284166020|ref|YP_003404299.1| - 0.025 14.8 5.0 0.035 14.3 5.0 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) FA_desaturase PF00487.24 gi|284166020|ref|YP_003404299.1| - 0.26 11.1 1.2 0.24 11.2 0.2 1.5 2 0 0 2 2 2 0 Fatty acid desaturase Cyt_bd_oxida_II PF02322.15 gi|284166020|ref|YP_003404299.1| - 1.1 8.6 17.8 2.1 7.6 17.8 1.3 1 1 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II HXXEE PF13787.6 gi|284166020|ref|YP_003404299.1| - 1.8 9.4 6.7 1.1 10.1 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function with HXXEE motif DUF417 PF04224.12 gi|284166020|ref|YP_003404299.1| - 1.8 8.1 6.1 0.13 11.8 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF417 Claudin_2 PF13903.6 gi|284166020|ref|YP_003404299.1| - 2.1 8.0 7.9 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF2371 PF10177.9 gi|284166020|ref|YP_003404299.1| - 4.8 7.4 4.9 15 5.7 0.0 2.3 1 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Abhydrolase_1 PF00561.20 gi|284166021|ref|YP_003404300.1| - 1.1e-18 67.9 0.0 4.8e-17 62.4 0.0 2.2 2 0 0 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284166021|ref|YP_003404300.1| - 1.9e-17 64.7 1.0 3.3e-17 63.8 1.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284166021|ref|YP_003404300.1| - 1.7e-16 60.2 0.0 6.2e-15 55.1 0.0 2.1 2 0 0 2 2 2 1 Serine aminopeptidase, S33 DUF1057 PF06342.12 gi|284166021|ref|YP_003404300.1| - 0.012 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) Chlorophyllase2 PF12740.7 gi|284166021|ref|YP_003404300.1| - 0.018 14.0 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase enzyme Ndr PF03096.14 gi|284166021|ref|YP_003404300.1| - 0.035 12.8 0.0 0.052 12.2 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF915 PF06028.11 gi|284166021|ref|YP_003404300.1| - 0.27 10.5 0.0 7.1 5.9 0.0 2.5 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF915) PTS_IIB PF02302.17 gi|284166022|ref|YP_003404301.1| - 7.6e-20 71.4 0.7 7.6e-20 71.4 0.7 1.5 2 0 0 2 2 2 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.18 gi|284166023|ref|YP_003404302.1| - 8.2e-104 346.8 0.0 1.1e-103 346.4 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|284166023|ref|YP_003404302.1| - 2.6e-25 88.8 1.3 2.6e-25 88.8 1.3 2.9 4 0 0 4 4 4 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|284166023|ref|YP_003404302.1| - 8.3e-24 83.1 0.2 1.7e-23 82.1 0.2 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain DinB_2 PF12867.7 gi|284166023|ref|YP_003404302.1| - 3.2 8.3 10.3 2.1 8.8 0.3 3.3 4 0 0 4 4 4 0 DinB superfamily PTS-HPr PF00381.19 gi|284166024|ref|YP_003404303.1| - 6.2e-28 96.9 0.2 7.1e-28 96.7 0.2 1.1 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.22 gi|284166025|ref|YP_003404304.1| - 1.4e-34 119.0 0.0 1.6e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS_EIIC PF02378.18 gi|284166026|ref|YP_003404305.1| - 1.2e-17 63.9 33.6 1.2e-17 63.9 33.6 1.5 1 1 0 1 1 1 1 Phosphotransferase system, EIIC Wzz PF02706.15 gi|284166026|ref|YP_003404305.1| - 4.5 7.7 5.7 7.3 7.0 0.1 3.1 3 0 0 3 3 3 0 Chain length determinant protein Wzy_C PF04932.15 gi|284166026|ref|YP_003404305.1| - 9.9 5.8 11.5 10 5.7 7.4 2.7 2 1 0 2 2 2 0 O-Antigen ligase PfkB PF00294.24 gi|284166027|ref|YP_003404306.1| - 8.8e-46 156.6 4.0 1.2e-45 156.1 4.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|284166027|ref|YP_003404306.1| - 0.001 18.5 0.3 0.0016 17.9 0.3 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoRC PF00455.22 gi|284166028|ref|YP_003404307.1| - 1.1e-47 161.9 0.1 1.5e-47 161.5 0.1 1.1 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|284166028|ref|YP_003404307.1| - 2.3e-17 62.5 0.8 3.8e-17 61.8 0.1 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|284166028|ref|YP_003404307.1| - 9.9e-09 35.0 0.0 1.9e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|284166028|ref|YP_003404307.1| - 6.5e-08 32.3 0.2 1.3e-07 31.4 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|284166028|ref|YP_003404307.1| - 9.2e-07 28.4 0.0 1.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|284166028|ref|YP_003404307.1| - 2.2e-06 27.4 1.1 7.9e-06 25.7 0.2 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|284166028|ref|YP_003404307.1| - 3.8e-05 23.7 1.5 9.3e-05 22.4 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284166028|ref|YP_003404307.1| - 7.1e-05 22.5 0.1 0.00014 21.6 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284166028|ref|YP_003404307.1| - 0.0001 22.2 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284166028|ref|YP_003404307.1| - 0.0003 20.3 0.6 0.0037 16.8 0.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|284166028|ref|YP_003404307.1| - 0.0011 18.8 0.4 0.022 14.6 0.1 2.2 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|284166028|ref|YP_003404307.1| - 0.0073 16.5 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|284166028|ref|YP_003404307.1| - 0.015 15.0 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|284166028|ref|YP_003404307.1| - 0.018 15.4 0.0 0.046 14.1 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.6 gi|284166028|ref|YP_003404307.1| - 0.019 15.0 0.1 0.05 13.6 0.0 1.8 2 0 0 2 2 1 0 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|284166028|ref|YP_003404307.1| - 0.036 13.6 0.2 0.083 12.4 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_ECF PF07638.11 gi|284166028|ref|YP_003404307.1| - 0.036 14.0 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor Mga PF05043.13 gi|284166028|ref|YP_003404307.1| - 0.05 14.2 0.0 0.091 13.4 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|284166028|ref|YP_003404307.1| - 0.053 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus KfrA_N PF11740.8 gi|284166028|ref|YP_003404307.1| - 0.057 14.1 1.5 0.21 12.3 1.5 1.9 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_28 PF13518.6 gi|284166028|ref|YP_003404307.1| - 0.078 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.11 gi|284166028|ref|YP_003404307.1| - 0.081 12.7 0.5 0.22 11.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF742) Sigma70_r4_2 PF08281.12 gi|284166028|ref|YP_003404307.1| - 0.092 12.4 0.6 0.21 11.3 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 Arg_repressor PF01316.21 gi|284166028|ref|YP_003404307.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain DsrD PF08679.11 gi|284166028|ref|YP_003404307.1| - 0.2 11.9 0.0 0.63 10.3 0.0 1.9 2 0 0 2 2 2 0 Dissimilatory sulfite reductase D (DsrD) HTH_Mga PF08280.11 gi|284166028|ref|YP_003404307.1| - 0.21 11.7 0.1 0.38 10.8 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Iso_dh PF00180.20 gi|284166029|ref|YP_003404308.1| - 1e-90 304.4 0.0 1.2e-90 304.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Glutaredoxin PF00462.24 gi|284166029|ref|YP_003404308.1| - 0.19 12.0 0.1 0.67 10.2 0.0 1.9 2 0 0 2 2 2 0 Glutaredoxin EamA PF00892.20 gi|284166030|ref|YP_003404309.1| - 1.3e-39 135.6 30.8 9.9e-20 71.1 13.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 gi|284166030|ref|YP_003404309.1| - 0.011 15.7 1.9 0.011 15.7 1.9 4.0 3 1 1 4 4 4 0 Positive regulator of sigma(E), RseC/MucC Ureide_permease PF07168.11 gi|284166030|ref|YP_003404309.1| - 0.18 10.6 4.3 0.32 9.7 0.6 2.2 2 0 0 2 2 2 0 Ureide permease Aconitase_C PF00694.19 gi|284166031|ref|YP_003404310.1| - 2.8e-19 69.7 0.0 4.2e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.20 gi|284166032|ref|YP_003404311.1| - 1.8e-145 485.5 0.0 2e-145 485.3 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|284166032|ref|YP_003404311.1| - 0.0034 16.2 0.0 0.0065 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF3944 PF13099.6 gi|284166032|ref|YP_003404311.1| - 0.1 12.5 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3944) DUF1179 PF06678.11 gi|284166033|ref|YP_003404312.1| - 0.24 11.4 2.1 0.31 11.0 0.9 1.7 1 1 0 2 2 2 0 Protein of unknown function (DUF1179) IlvN PF07991.12 gi|284166034|ref|YP_003404313.1| - 8.5e-71 236.9 0.1 1.2e-70 236.4 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|284166034|ref|YP_003404313.1| - 1e-61 207.4 0.3 1.5e-61 206.9 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|284166034|ref|YP_003404313.1| - 1.6e-06 28.4 0.0 3.3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|284166034|ref|YP_003404313.1| - 2.4e-06 28.1 0.1 5.9e-06 26.8 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|284166034|ref|YP_003404313.1| - 8.7e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|284166034|ref|YP_003404313.1| - 0.01 16.7 0.1 0.021 15.6 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|284166034|ref|YP_003404313.1| - 0.014 15.0 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|284166034|ref|YP_003404313.1| - 0.021 15.1 0.2 0.051 13.9 0.2 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain ALS_ss_C PF10369.9 gi|284166035|ref|YP_003404314.1| - 6.2e-22 77.6 0.0 1.2e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|284166035|ref|YP_003404314.1| - 7.2e-15 54.6 0.0 1.3e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|284166035|ref|YP_003404314.1| - 1.9e-13 49.9 0.1 5.5e-13 48.4 0.1 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|284166035|ref|YP_003404314.1| - 0.0026 18.3 0.0 0.0052 17.4 0.0 1.5 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 gi|284166036|ref|YP_003404315.1| - 1.5e-50 171.2 0.1 5.7e-50 169.3 0.2 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|284166036|ref|YP_003404315.1| - 2.2e-50 170.4 1.7 4e-50 169.6 0.0 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|284166036|ref|YP_003404315.1| - 3e-45 153.3 0.1 1.2e-44 151.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|284166036|ref|YP_003404315.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit CutA1 PF03091.15 gi|284166036|ref|YP_003404315.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 CutA1 divalent ion tolerance protein HMGL-like PF00682.19 gi|284166037|ref|YP_003404316.1| - 7.3e-82 274.9 6.8 1.2e-81 274.2 6.8 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|284166037|ref|YP_003404316.1| - 0.011 15.2 0.1 0.036 13.5 0.0 1.9 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel Asp_protease PF09668.10 gi|284166037|ref|YP_003404316.1| - 0.065 13.0 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Aspartyl protease Radical_SAM PF04055.21 gi|284166037|ref|YP_003404316.1| - 0.069 13.5 0.1 0.69 10.3 0.1 2.6 1 1 1 3 3 3 0 Radical SAM superfamily Ferritin PF00210.24 gi|284166038|ref|YP_003404317.1| - 7.8e-26 90.7 1.9 8.9e-26 90.5 1.9 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|284166038|ref|YP_003404317.1| - 9.1e-11 42.3 0.7 1e-10 42.1 0.7 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF892 PF05974.12 gi|284166038|ref|YP_003404317.1| - 0.00044 20.3 3.9 0.0012 18.9 3.9 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF892) DUF4439 PF14530.6 gi|284166038|ref|YP_003404317.1| - 0.00073 20.2 0.1 0.00099 19.8 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) Ferritin-like PF12902.7 gi|284166038|ref|YP_003404317.1| - 0.0015 18.4 0.3 0.0018 18.2 0.3 1.1 1 0 0 1 1 1 1 Ferritin-like Ferritin_2 PF13668.6 gi|284166038|ref|YP_003404317.1| - 0.0016 18.7 0.3 0.002 18.3 0.3 1.2 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|284166038|ref|YP_003404317.1| - 0.0016 18.8 1.2 0.23 11.8 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) GatB_Yqey PF02637.18 gi|284166038|ref|YP_003404317.1| - 0.023 14.6 1.1 0.072 13.0 1.1 1.8 1 1 0 1 1 1 0 GatB domain DUF349 PF03993.12 gi|284166038|ref|YP_003404317.1| - 0.048 14.0 1.8 1.9 8.9 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) PIN_8 PF18476.1 gi|284166038|ref|YP_003404317.1| - 0.062 13.2 0.3 0.076 12.9 0.3 1.0 1 0 0 1 1 1 0 PIN like domain DUF892 PF05974.12 gi|284166040|ref|YP_003404319.1| - 3.9e-41 140.7 7.3 4.8e-41 140.4 7.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|284166040|ref|YP_003404319.1| - 0.0057 16.6 10.8 0.0078 16.1 8.0 2.2 1 1 1 2 2 2 1 Ferritin-like domain TraB PF01963.17 gi|284166040|ref|YP_003404319.1| - 0.017 15.1 4.3 0.023 14.6 4.3 1.3 1 1 0 1 1 1 0 TraB family Death PF00531.22 gi|284166040|ref|YP_003404319.1| - 0.081 13.1 0.1 1.6 8.9 0.0 2.5 2 0 0 2 2 2 0 Death domain Rubrerythrin PF02915.17 gi|284166040|ref|YP_003404319.1| - 0.16 12.4 6.4 0.25 11.7 6.1 1.5 1 1 0 1 1 1 0 Rubrerythrin Tsc35 PF15079.6 gi|284166040|ref|YP_003404319.1| - 0.26 10.8 2.1 0.17 11.4 0.6 1.5 1 1 0 1 1 1 0 Testis-specific protein 35 DUF2524 PF10732.9 gi|284166040|ref|YP_003404319.1| - 0.3 11.4 8.8 0.5 10.7 1.2 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF2524) DUF2937 PF11157.8 gi|284166040|ref|YP_003404319.1| - 0.51 10.0 2.1 0.95 9.2 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) Vir_act_alpha_C PF10400.9 gi|284166040|ref|YP_003404319.1| - 0.51 11.1 3.4 9.6 7.0 0.1 2.6 2 1 0 2 2 2 0 Virulence activator alpha C-term FKBP_N PF01346.18 gi|284166040|ref|YP_003404319.1| - 1.6 9.7 5.2 1.5 9.8 1.3 2.4 1 1 1 2 2 2 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HATPase_c PF02518.26 gi|284166041|ref|YP_003404320.1| - 3.2e-26 92.0 0.0 1.7e-25 89.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284166041|ref|YP_003404320.1| - 5.8e-13 48.7 0.4 5.8e-13 48.7 0.4 2.9 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284166041|ref|YP_003404320.1| - 6.4e-08 32.8 0.6 1.5e-07 31.6 0.6 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|284166041|ref|YP_003404320.1| - 6.1e-05 23.2 0.1 0.0002 21.6 0.0 1.9 2 0 0 2 2 1 1 PAS domain HATPase_c_5 PF14501.6 gi|284166041|ref|YP_003404320.1| - 0.00097 19.0 0.0 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284166041|ref|YP_003404320.1| - 0.0037 17.2 0.0 0.012 15.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MctB PF11382.8 gi|284166041|ref|YP_003404320.1| - 0.017 14.8 6.1 1.3 8.7 0.7 2.7 3 0 0 3 3 3 0 Copper transport outer membrane protein, MctB DivIC PF04977.15 gi|284166041|ref|YP_003404320.1| - 0.029 14.2 1.5 5.4 6.9 0.2 2.6 2 0 0 2 2 2 0 Septum formation initiator Spore_III_AB PF09548.10 gi|284166041|ref|YP_003404320.1| - 0.057 13.5 0.3 0.58 10.3 0.0 2.4 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) KASH_CCD PF14662.6 gi|284166041|ref|YP_003404320.1| - 0.08 12.8 6.3 1.9 8.3 0.8 2.2 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF4164 PF13747.6 gi|284166041|ref|YP_003404320.1| - 0.14 12.4 0.2 0.14 12.4 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4164) Importin_rep_6 PF18829.1 gi|284166041|ref|YP_003404320.1| - 0.16 12.1 1.0 0.38 10.9 1.0 1.6 1 0 0 1 1 1 0 Importin repeat 6 TSC22 PF01166.18 gi|284166041|ref|YP_003404320.1| - 0.16 12.3 3.5 1.2 9.5 0.1 3.0 3 0 0 3 3 2 0 TSC-22/dip/bun family DUF4847 PF16139.5 gi|284166041|ref|YP_003404320.1| - 0.2 11.5 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4847) ATP-synt_D PF01813.17 gi|284166041|ref|YP_003404320.1| - 0.31 10.8 2.2 0.88 9.4 1.8 2.0 1 1 1 2 2 2 0 ATP synthase subunit D Snapin_Pallidin PF14712.6 gi|284166041|ref|YP_003404320.1| - 0.32 11.5 4.0 0.41 11.1 0.3 2.7 3 0 0 3 3 2 0 Snapin/Pallidin Jnk-SapK_ap_N PF09744.9 gi|284166041|ref|YP_003404320.1| - 0.37 11.0 4.7 11 6.2 0.3 2.4 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Tektin PF03148.14 gi|284166041|ref|YP_003404320.1| - 0.41 9.4 4.4 0.14 10.9 1.1 1.8 2 0 0 2 2 2 0 Tektin family Nsp1_C PF05064.13 gi|284166041|ref|YP_003404320.1| - 1 9.2 4.8 0.89 9.4 0.5 2.7 2 1 2 4 4 3 0 Nsp1-like C-terminal region Streptin-Immun PF11083.8 gi|284166041|ref|YP_003404320.1| - 1.4 9.3 5.8 1.1 9.7 0.1 3.2 4 0 0 4 4 4 0 Lantibiotic streptin immunity protein ATG16 PF08614.11 gi|284166041|ref|YP_003404320.1| - 2 8.6 8.3 0.34 11.1 3.0 2.2 2 1 0 2 2 2 0 Autophagy protein 16 (ATG16) Rotamase PF00639.21 gi|284166041|ref|YP_003404320.1| - 4.6 8.3 4.7 70 4.5 0.1 3.0 2 1 1 3 3 3 0 PPIC-type PPIASE domain ABC_tran_CTD PF16326.5 gi|284166041|ref|YP_003404320.1| - 9.4 6.6 11.3 5.9 7.2 0.8 3.6 4 0 0 4 4 4 0 ABC transporter C-terminal domain Glyoxalase PF00903.25 gi|284166042|ref|YP_003404321.1| - 2.3e-08 34.3 0.0 0.00073 19.7 0.0 2.9 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284166042|ref|YP_003404321.1| - 1.2e-07 32.4 3.7 0.0001 23.0 1.0 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|284166042|ref|YP_003404321.1| - 0.00027 20.8 0.0 3.5 7.6 0.0 3.5 4 0 0 4 4 4 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284166042|ref|YP_003404321.1| - 0.091 12.9 0.1 0.32 11.1 0.0 2.1 2 1 0 2 2 2 0 Glyoxalase-like domain RHH_1 PF01402.21 gi|284166045|ref|YP_003404324.1| - 0.00064 19.6 0.1 0.0011 18.8 0.0 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.11 gi|284166045|ref|YP_003404324.1| - 0.083 13.2 0.1 0.19 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain SHOCT PF09851.9 gi|284166045|ref|YP_003404324.1| - 0.18 11.6 2.7 0.34 10.7 2.7 1.5 1 1 0 1 1 1 0 Short C-terminal domain Glycos_transf_2 PF00535.26 gi|284166047|ref|YP_003404326.1| - 5.5e-16 58.9 0.1 7.4e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284166047|ref|YP_003404326.1| - 1e-08 35.4 0.0 1.7e-08 34.7 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|284166047|ref|YP_003404326.1| - 0.014 15.9 0.0 0.027 15.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 UDPG_MGDP_dh_N PF03721.14 gi|284166048|ref|YP_003404327.1| - 3e-50 170.4 0.0 4.3e-50 169.9 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|284166048|ref|YP_003404327.1| - 6.8e-34 116.0 0.0 1.1e-33 115.2 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|284166048|ref|YP_003404327.1| - 9.4e-28 96.7 0.0 3.1e-27 95.1 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ApbA PF02558.16 gi|284166048|ref|YP_003404327.1| - 5.3e-06 26.2 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284166048|ref|YP_003404327.1| - 3.8e-05 23.6 0.0 7.6e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|284166048|ref|YP_003404327.1| - 8.9e-05 22.5 0.0 0.00052 20.0 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|284166048|ref|YP_003404327.1| - 0.0002 21.9 0.7 0.13 12.8 0.0 4.0 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.24 gi|284166048|ref|YP_003404327.1| - 0.00037 20.9 0.2 0.018 15.4 0.0 3.0 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|284166048|ref|YP_003404327.1| - 0.002 17.4 0.0 0.0037 16.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284166048|ref|YP_003404327.1| - 0.0031 17.7 0.1 0.012 15.9 0.1 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|284166048|ref|YP_003404327.1| - 0.0049 17.4 0.2 0.04 14.5 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|284166048|ref|YP_003404327.1| - 0.005 17.1 2.3 0.098 12.9 0.2 2.8 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|284166048|ref|YP_003404327.1| - 0.0081 15.5 0.1 1.9 7.8 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B12-binding PF02310.19 gi|284166048|ref|YP_003404327.1| - 0.017 15.1 0.3 2.1 8.4 0.0 3.1 2 1 1 3 3 3 0 B12 binding domain DUF3320 PF11784.8 gi|284166048|ref|YP_003404327.1| - 0.018 15.0 0.9 0.24 11.4 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) Rossmann-like PF10727.9 gi|284166048|ref|YP_003404327.1| - 0.11 12.4 0.1 0.3 11.0 0.1 1.8 1 0 0 1 1 1 0 Rossmann-like domain Mur_ligase PF01225.25 gi|284166048|ref|YP_003404327.1| - 0.11 12.9 0.1 0.41 11.0 0.1 2.0 1 0 0 1 1 1 0 Mur ligase family, catalytic domain DpaA_N PF16924.5 gi|284166048|ref|YP_003404327.1| - 0.14 12.3 0.0 2.5 8.2 0.0 2.6 2 1 1 3 3 3 0 Dipicolinate synthase subunit A N-terminal domain DAO PF01266.24 gi|284166048|ref|YP_003404327.1| - 0.76 9.3 5.4 1.4 8.5 5.4 1.8 1 1 0 1 1 1 0 FAD dependent oxidoreductase Abhydrolase_3 PF07859.13 gi|284166049|ref|YP_003404328.1| - 4.4e-76 255.4 0.0 6.2e-76 254.9 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|284166049|ref|YP_003404328.1| - 5.4e-15 55.2 0.0 1.4e-14 53.9 0.0 1.5 1 1 0 1 1 1 1 Carboxylesterase family AXE1 PF05448.12 gi|284166049|ref|YP_003404328.1| - 0.023 13.4 0.0 0.048 12.3 0.0 1.5 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DLH PF01738.18 gi|284166049|ref|YP_003404328.1| - 0.024 14.2 0.0 4.8 6.7 0.0 2.5 3 0 0 3 3 3 0 Dienelactone hydrolase family PALP PF00291.25 gi|284166049|ref|YP_003404328.1| - 0.026 13.9 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Peptidase_S9 PF00326.21 gi|284166049|ref|YP_003404328.1| - 0.065 12.7 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 Prolyl oligopeptidase family Indigoidine_A PF04227.12 gi|284166049|ref|YP_003404328.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Indigoidine synthase A like protein Chlorophyllase2 PF12740.7 gi|284166049|ref|YP_003404328.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Say1_Mug180 PF10340.9 gi|284166049|ref|YP_003404328.1| - 0.27 10.1 0.0 16 4.2 0.0 2.0 2 0 0 2 2 2 0 Steryl acetyl hydrolase Pribosyltran PF00156.27 gi|284166050|ref|YP_003404329.1| - 6.7e-18 64.7 1.4 9.3e-18 64.2 1.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|284166050|ref|YP_003404329.1| - 0.00077 19.0 0.0 0.00093 18.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|284166050|ref|YP_003404329.1| - 0.0036 16.8 0.2 0.005 16.4 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase CBS PF00571.28 gi|284166050|ref|YP_003404329.1| - 0.11 13.0 1.6 0.27 11.7 1.6 1.7 1 1 0 1 1 1 0 CBS domain PikAIV_N PF18605.1 gi|284166050|ref|YP_003404329.1| - 0.16 11.6 1.3 6.3 6.5 0.0 2.6 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain Aldolase_II PF00596.21 gi|284166051|ref|YP_003404330.1| - 3.9e-43 147.5 0.9 4.8e-43 147.3 0.9 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain HAD_2 PF13419.6 gi|284166052|ref|YP_003404331.1| - 7e-20 71.8 0.0 1.4e-19 70.9 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284166052|ref|YP_003404331.1| - 1.3e-14 55.0 0.0 1.7e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284166052|ref|YP_003404331.1| - 3.4e-11 43.1 0.1 5.9e-11 42.3 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|284166052|ref|YP_003404331.1| - 1.6e-05 25.4 0.4 4.6e-05 23.9 0.4 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|284166052|ref|YP_003404331.1| - 0.00061 19.9 0.0 0.0018 18.3 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|284166052|ref|YP_003404331.1| - 0.0052 16.6 0.0 0.59 10.0 0.0 2.2 2 0 0 2 2 2 2 Acid Phosphatase Phage_holin_3_6 PF07332.11 gi|284166053|ref|YP_003404332.1| - 0.0044 17.0 3.2 0.0052 16.8 3.2 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Tad PF13400.6 gi|284166053|ref|YP_003404332.1| - 0.36 11.2 0.3 0.36 11.2 0.3 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like tRNA-synt_2b PF00587.25 gi|284166054|ref|YP_003404333.1| - 3.6e-32 111.8 0.0 6.1e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|284166054|ref|YP_003404333.1| - 6.9e-15 55.0 2.3 9.7e-15 54.5 0.4 2.3 3 0 0 3 3 3 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|284166054|ref|YP_003404333.1| - 6e-13 48.7 0.0 1.1e-12 47.8 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|284166054|ref|YP_003404333.1| - 1.9e-11 43.9 0.1 4.6e-11 42.6 0.1 1.7 1 0 0 1 1 1 1 TGS domain HGTP_anticodon2 PF12745.7 gi|284166054|ref|YP_003404333.1| - 0.047 13.2 0.7 0.079 12.5 0.7 1.3 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs PEMT PF04191.13 gi|284166055|ref|YP_003404334.1| - 7.3e-16 58.5 0.3 7.3e-16 58.5 0.3 2.4 3 0 0 3 3 3 1 Phospholipid methyltransferase DUF1295 PF06966.12 gi|284166055|ref|YP_003404334.1| - 5.1e-05 22.9 0.6 6.8e-05 22.5 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.14 gi|284166055|ref|YP_003404334.1| - 0.00017 22.0 0.1 0.00035 20.9 0.1 1.5 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.17 gi|284166055|ref|YP_003404334.1| - 0.00024 20.0 0.1 0.00039 19.3 0.1 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.16 gi|284166055|ref|YP_003404334.1| - 0.00066 19.7 0.1 0.00095 19.2 0.1 1.3 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase FA_desaturase PF00487.24 gi|284166055|ref|YP_003404334.1| - 0.66 9.8 7.0 4.7 7.0 6.0 2.2 1 1 0 1 1 1 0 Fatty acid desaturase DUF5325 PF17259.2 gi|284166055|ref|YP_003404334.1| - 2.1 8.3 10.2 11 6.0 0.0 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5325) HTH_10 PF04967.12 gi|284166056|ref|YP_003404335.1| - 4.9e-14 51.9 0.2 7.7e-14 51.2 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain VWA_3 PF13768.6 gi|284166056|ref|YP_003404335.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 1 1 1 2 2 2 0 von Willebrand factor type A domain Pribosyltran PF00156.27 gi|284166057|ref|YP_003404336.1| - 6.4e-11 42.0 0.2 9.4e-11 41.5 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|284166057|ref|YP_003404336.1| - 0.0048 16.9 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_IclR PF09339.10 gi|284166057|ref|YP_003404336.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain B12-binding PF02310.19 gi|284166058|ref|YP_003404337.1| - 1.1e-16 60.9 0.5 1.5e-16 60.5 0.5 1.2 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|284166058|ref|YP_003404337.1| - 0.069 13.1 0.1 0.61 10.1 0.0 2.1 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Usp PF00582.26 gi|284166059|ref|YP_003404338.1| - 9.2e-33 113.7 1.4 1.1e-32 113.5 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family E1_dh PF00676.20 gi|284166060|ref|YP_003404339.1| - 5.9e-79 265.1 0.0 8.3e-79 264.6 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Transket_pyr PF02779.24 gi|284166060|ref|YP_003404339.1| - 3.9e-44 150.4 0.0 8.1e-44 149.4 0.0 1.6 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|284166060|ref|YP_003404339.1| - 3.1e-34 117.5 0.1 7.1e-34 116.4 0.1 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain DXP_synthase_N PF13292.6 gi|284166060|ref|YP_003404339.1| - 1.1e-05 24.8 0.0 1.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|284166060|ref|YP_003404339.1| - 0.0042 16.1 0.0 0.0075 15.3 0.0 1.3 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain NAD_binding_2 PF03446.15 gi|284166060|ref|YP_003404339.1| - 0.034 14.3 0.8 0.96 9.6 0.1 3.0 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_S8 PF00082.22 gi|284166061|ref|YP_003404340.1| - 4.3e-34 118.1 1.6 1.5e-33 116.3 1.6 1.8 1 1 0 1 1 1 1 Subtilase family Ribosomal_L15e PF00827.17 gi|284166062|ref|YP_003404341.1| - 7.8e-82 273.6 4.7 9.6e-82 273.3 4.7 1.0 1 0 0 1 1 1 1 Ribosomal L15 YjbF PF11102.8 gi|284166062|ref|YP_003404341.1| - 0.12 12.1 0.4 0.92 9.2 0.4 2.1 1 1 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CPBP PF02517.16 gi|284166063|ref|YP_003404342.1| - 2.9 8.3 10.0 1.3e+02 3.0 9.7 2.5 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease adh_short_C2 PF13561.6 gi|284166064|ref|YP_003404343.1| - 2.1e-69 233.6 2.3 2.6e-69 233.4 2.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284166064|ref|YP_003404343.1| - 2.8e-57 193.3 1.7 3.6e-57 193.0 1.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284166064|ref|YP_003404343.1| - 9.6e-13 48.4 0.6 1.3e-12 48.0 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284166064|ref|YP_003404343.1| - 0.00019 21.0 0.3 0.00087 18.8 0.2 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Methyltransf_25 PF13649.6 gi|284166064|ref|YP_003404343.1| - 0.0007 20.2 0.2 0.0015 19.2 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain 3Beta_HSD PF01073.19 gi|284166064|ref|YP_003404343.1| - 0.036 13.1 0.7 0.061 12.3 0.7 1.5 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family AdoHcyase_NAD PF00670.21 gi|284166064|ref|YP_003404343.1| - 0.038 14.1 2.8 0.14 12.2 2.8 1.9 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|284166064|ref|YP_003404343.1| - 0.066 13.7 0.1 0.17 12.3 0.1 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|284166064|ref|YP_003404343.1| - 0.073 13.0 0.2 0.14 12.0 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|284166064|ref|YP_003404343.1| - 0.087 12.2 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase THF_DHG_CYH_C PF02882.19 gi|284166064|ref|YP_003404343.1| - 0.091 12.1 0.5 1.7 8.0 0.2 2.4 2 1 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|284166064|ref|YP_003404343.1| - 0.19 11.0 0.1 0.19 11.0 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain p450 PF00067.22 gi|284166065|ref|YP_003404344.1| - 1.7e-33 116.1 0.0 1.1e-27 96.9 0.0 2.7 3 0 0 3 3 3 2 Cytochrome P450 Acyl-CoA_dh_N PF02771.16 gi|284166065|ref|YP_003404344.1| - 0.06 14.0 0.3 0.2 12.3 0.0 1.9 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain TetR_N PF00440.23 gi|284166066|ref|YP_003404345.1| - 1.7e-13 50.1 0.0 3.6e-13 49.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|284166066|ref|YP_003404345.1| - 2.5e-11 43.8 1.5 2.5e-11 43.8 1.5 1.6 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 gi|284166066|ref|YP_003404345.1| - 0.0032 17.5 0.0 0.01 15.9 0.0 1.9 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|284166066|ref|YP_003404345.1| - 0.0035 17.7 1.7 0.0035 17.7 1.7 1.9 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|284166066|ref|YP_003404345.1| - 0.031 14.3 0.1 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_24 PF17932.1 gi|284166066|ref|YP_003404345.1| - 0.039 14.2 2.0 0.35 11.1 0.1 2.9 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|284166066|ref|YP_003404345.1| - 0.041 14.1 1.1 0.099 12.9 0.6 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain RIO1 PF01163.22 gi|284166067|ref|YP_003404346.1| - 2.8e-44 151.0 0.3 3.8e-44 150.5 0.3 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|284166067|ref|YP_003404346.1| - 4.9e-27 94.0 0.1 1e-26 93.0 0.1 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|284166067|ref|YP_003404346.1| - 9e-05 22.5 1.7 0.28 11.1 0.0 3.0 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|284166067|ref|YP_003404346.1| - 0.00031 20.2 0.1 0.00052 19.5 0.1 1.3 1 1 0 1 1 1 1 Protein kinase domain ABC_tran PF00005.27 gi|284166068|ref|YP_003404347.1| - 9.5e-31 107.1 0.0 1.3e-30 106.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166068|ref|YP_003404347.1| - 2.4e-09 37.4 0.0 0.00063 19.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284166068|ref|YP_003404347.1| - 1.2e-05 25.8 0.1 2.6e-05 24.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284166068|ref|YP_003404347.1| - 0.00018 21.8 0.0 0.00054 20.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284166068|ref|YP_003404347.1| - 0.00027 21.4 0.1 0.0028 18.1 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|284166068|ref|YP_003404347.1| - 0.0037 17.2 0.0 0.0059 16.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|284166068|ref|YP_003404347.1| - 0.0066 16.7 1.5 0.068 13.4 0.0 2.5 3 0 0 3 3 2 1 AAA domain NACHT PF05729.12 gi|284166068|ref|YP_003404347.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|284166068|ref|YP_003404347.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|284166068|ref|YP_003404347.1| - 0.019 14.5 0.4 0.13 11.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|284166068|ref|YP_003404347.1| - 0.023 14.4 0.0 0.093 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|284166068|ref|YP_003404347.1| - 0.029 14.5 0.4 0.087 13.0 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284166068|ref|YP_003404347.1| - 0.042 14.4 0.0 0.067 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|284166068|ref|YP_003404347.1| - 0.044 13.7 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|284166068|ref|YP_003404347.1| - 0.046 14.3 0.0 0.11 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|284166068|ref|YP_003404347.1| - 0.055 12.9 0.0 2.2 7.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|284166068|ref|YP_003404347.1| - 0.064 13.3 0.1 0.14 12.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|284166068|ref|YP_003404347.1| - 0.075 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|284166068|ref|YP_003404347.1| - 0.094 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|284166068|ref|YP_003404347.1| - 0.11 12.9 0.1 0.47 10.9 0.0 1.9 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.23 gi|284166068|ref|YP_003404347.1| - 0.13 12.4 0.0 1.1 9.4 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|284166068|ref|YP_003404347.1| - 0.16 11.7 0.1 0.43 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|284166068|ref|YP_003404347.1| - 0.17 11.6 0.0 0.4 10.4 0.0 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_15 PF13175.6 gi|284166068|ref|YP_003404347.1| - 0.22 11.2 0.0 0.38 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|284166069|ref|YP_003404348.1| - 1.4e-22 80.3 11.4 2.3e-22 79.7 11.4 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component NMT1_2 PF13379.6 gi|284166070|ref|YP_003404349.1| - 2e-36 126.0 0.0 2.7e-36 125.6 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|284166070|ref|YP_003404349.1| - 0.022 14.3 1.1 0.065 12.8 0.1 2.0 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein BPL_LplA_LipB PF03099.19 gi|284166071|ref|YP_003404350.1| - 1.6e-07 31.3 0.0 2.4e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF3040 PF11239.8 gi|284166072|ref|YP_003404351.1| - 0.055 13.7 4.6 0.38 11.1 4.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Phage_holin_3_6 PF07332.11 gi|284166072|ref|YP_003404351.1| - 0.061 13.4 5.0 0.07 13.2 5.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ArAE_2_N PF10337.9 gi|284166072|ref|YP_003404351.1| - 0.6 9.1 4.9 0.71 8.8 4.9 1.1 1 0 0 1 1 1 0 Putative ER transporter, 6TM, N-terminal Methyltransf_11 PF08241.12 gi|284166073|ref|YP_003404352.1| - 7.2e-24 84.3 0.3 1.4e-23 83.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284166073|ref|YP_003404352.1| - 8.2e-19 68.1 0.1 1.8e-18 67.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284166073|ref|YP_003404352.1| - 1.9e-15 57.4 0.0 3.3e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166073|ref|YP_003404352.1| - 2e-15 56.9 0.0 2.6e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166073|ref|YP_003404352.1| - 3.6e-15 56.2 0.0 4.7e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284166073|ref|YP_003404352.1| - 6.2e-12 45.3 0.0 8.5e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|284166073|ref|YP_003404352.1| - 2.6e-06 27.2 0.0 3.7e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|284166073|ref|YP_003404352.1| - 0.065 11.8 0.0 0.079 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|284166073|ref|YP_003404352.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|284166073|ref|YP_003404352.1| - 0.22 11.0 0.0 0.39 10.2 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain Carb_kinase PF01256.17 gi|284166074|ref|YP_003404353.1| - 3.3e-31 108.6 0.5 4.3e-31 108.2 0.5 1.1 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|284166074|ref|YP_003404353.1| - 8e-05 22.1 0.8 0.0065 15.9 0.1 2.1 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family PfkB PF00294.24 gi|284166074|ref|YP_003404353.1| - 0.1 11.9 1.1 0.19 11.0 0.7 1.6 2 0 0 2 2 2 0 pfkB family carbohydrate kinase Pribosyltran PF00156.27 gi|284166075|ref|YP_003404354.1| - 1.1e-27 96.5 0.1 1.5e-27 96.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|284166075|ref|YP_003404354.1| - 0.00034 20.1 0.0 0.00049 19.6 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|284166075|ref|YP_003404354.1| - 0.0087 15.6 0.0 0.019 14.5 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase TraB PF01963.17 gi|284166076|ref|YP_003404355.1| - 2.3e-17 63.8 0.1 3.5e-17 63.2 0.1 1.2 1 0 0 1 1 1 1 TraB family ELFV_dehydrog PF00208.21 gi|284166077|ref|YP_003404356.1| - 5.2e-72 242.5 0.0 7.3e-72 242.0 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|284166077|ref|YP_003404356.1| - 4.7e-56 188.2 0.0 8.8e-56 187.4 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|284166077|ref|YP_003404356.1| - 0.00034 20.0 0.0 0.00063 19.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Mycobact_memb PF05423.13 gi|284166077|ref|YP_003404356.1| - 0.0023 17.9 0.1 0.005 16.8 0.1 1.5 1 0 0 1 1 1 1 Mycobacterium membrane protein IlvN PF07991.12 gi|284166077|ref|YP_003404356.1| - 0.091 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Zn-ribbon_8 PF09723.10 gi|284166078|ref|YP_003404357.1| - 0.00078 19.5 3.2 0.0018 18.4 3.2 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|284166078|ref|YP_003404357.1| - 0.00094 19.2 1.0 0.0012 18.9 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|284166078|ref|YP_003404357.1| - 0.0012 18.9 0.9 0.0014 18.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) OrfB_Zn_ribbon PF07282.11 gi|284166078|ref|YP_003404357.1| - 0.005 16.7 2.7 0.32 10.9 0.4 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|284166078|ref|YP_003404357.1| - 0.0053 16.6 3.2 0.0076 16.1 3.2 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|284166078|ref|YP_003404357.1| - 0.0065 16.5 0.2 0.0067 16.4 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|284166078|ref|YP_003404357.1| - 0.017 14.5 2.7 0.036 13.5 2.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|284166078|ref|YP_003404357.1| - 0.018 15.1 5.9 0.038 14.1 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ogr_Delta PF04606.12 gi|284166078|ref|YP_003404357.1| - 0.024 14.6 1.9 0.32 11.0 0.3 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2HC5 PF06221.13 gi|284166078|ref|YP_003404357.1| - 0.028 14.4 0.2 0.039 13.9 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zinc-ribbons_6 PF07191.12 gi|284166078|ref|YP_003404357.1| - 0.031 14.3 0.2 0.036 14.0 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|284166078|ref|YP_003404357.1| - 0.037 14.2 1.2 0.048 13.8 1.2 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Rubredoxin_2 PF18073.1 gi|284166078|ref|YP_003404357.1| - 0.051 13.3 1.2 0.084 12.6 1.2 1.4 1 1 0 1 1 1 0 Rubredoxin metal binding domain TackOD1 PF18551.1 gi|284166078|ref|YP_003404357.1| - 0.051 13.2 0.1 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-C4_Topoisom PF01396.19 gi|284166078|ref|YP_003404357.1| - 0.051 13.4 1.1 0.054 13.3 0.1 1.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.6 gi|284166078|ref|YP_003404357.1| - 0.052 13.5 1.2 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zinc_ribbon_2 PF13240.6 gi|284166078|ref|YP_003404357.1| - 0.054 13.2 1.8 4.2 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF678 PF05077.12 gi|284166078|ref|YP_003404357.1| - 0.069 13.3 0.2 1.4 9.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zinc_ribbon_9 PF14369.6 gi|284166078|ref|YP_003404357.1| - 0.12 12.6 2.9 0.2 11.9 2.7 1.5 1 1 0 1 1 1 0 zinc-ribbon zf-CCHC_6 PF15288.6 gi|284166078|ref|YP_003404357.1| - 0.18 11.7 1.1 0.27 11.1 1.1 1.4 1 0 0 1 1 1 0 Zinc knuckle zf_UBZ PF18439.1 gi|284166078|ref|YP_003404357.1| - 0.29 10.8 3.4 8 6.1 0.2 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|284166078|ref|YP_003404357.1| - 0.41 10.7 2.6 2.1 8.4 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|284166078|ref|YP_003404357.1| - 0.6 9.7 8.1 14 5.3 7.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.26 gi|284166078|ref|YP_003404357.1| - 1.3 9.6 3.4 23 5.7 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type BAT PF15915.5 gi|284166079|ref|YP_003404358.1| - 2.8e-40 137.7 15.0 2.8e-40 137.7 15.0 5.7 6 1 0 6 6 6 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|284166079|ref|YP_003404358.1| - 1.5e-27 96.6 13.7 3.9e-16 59.6 1.2 3.2 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.12 gi|284166079|ref|YP_003404358.1| - 5.4e-17 61.3 0.0 1.3e-16 60.1 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|284166079|ref|YP_003404358.1| - 7.5e-17 61.9 1.9 3.1e-07 30.8 0.1 2.8 3 0 0 3 3 3 2 GAF domain PAS_4 PF08448.10 gi|284166079|ref|YP_003404358.1| - 1.7e-11 44.4 13.3 6.2e-06 26.4 4.6 5.5 2 1 1 3 3 3 2 PAS fold GAF PF01590.26 gi|284166079|ref|YP_003404358.1| - 1.6e-08 35.3 0.3 0.0004 21.0 0.0 2.7 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.24 gi|284166079|ref|YP_003404358.1| - 6e-08 32.8 0.0 1.6e-07 31.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|284166079|ref|YP_003404358.1| - 0.002 18.1 0.1 0.7 9.9 0.0 3.0 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|284166079|ref|YP_003404358.1| - 0.0038 17.4 0.1 0.54 10.5 0.0 3.3 3 1 0 3 3 3 1 PAS domain DUF4200 PF13863.6 gi|284166079|ref|YP_003404358.1| - 0.091 13.2 5.1 0.24 11.8 5.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) ERCC4 PF02732.15 gi|284166080|ref|YP_003404359.1| - 2.1e-11 44.3 0.0 2.8e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.7 gi|284166080|ref|YP_003404359.1| - 3.4e-11 43.1 0.0 7.7e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|284166080|ref|YP_003404359.1| - 2.8e-10 40.6 0.0 7.4e-10 39.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|284166080|ref|YP_003404359.1| - 1.2e-06 28.1 0.8 0.00015 21.4 0.2 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HhH-GPD PF00730.25 gi|284166080|ref|YP_003404359.1| - 0.1 13.1 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein 5_3_exonuc PF01367.20 gi|284166080|ref|YP_003404359.1| - 0.13 12.9 0.0 0.4 11.3 0.0 1.8 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|284166080|ref|YP_003404359.1| - 0.15 12.4 0.0 0.63 10.3 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif Virul_fac_BrkB PF03631.15 gi|284166081|ref|YP_003404360.1| - 4.6e-34 118.2 29.0 5.5e-34 117.9 29.0 1.0 1 0 0 1 1 1 1 Virulence factor BrkB EI24 PF07264.11 gi|284166081|ref|YP_003404360.1| - 0.0052 17.0 5.3 0.0052 17.0 5.3 2.2 1 1 1 2 2 2 1 Etoposide-induced protein 2.4 (EI24) DUF1077 PF06417.12 gi|284166081|ref|YP_003404360.1| - 0.011 15.7 0.2 0.03 14.3 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) ABC2_membrane_5 PF13346.6 gi|284166081|ref|YP_003404360.1| - 5.5 6.5 15.9 1.5 8.4 12.4 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF2196 PF09962.9 gi|284166082|ref|YP_003404361.1| - 2e-18 66.1 1.7 2.2e-18 66.0 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) Abhydrolase_6 PF12697.7 gi|284166084|ref|YP_003404363.1| - 1.7e-05 25.6 4.2 2.8e-05 24.8 4.2 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|284166084|ref|YP_003404363.1| - 0.00013 21.8 0.0 0.00019 21.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family TIR_2 PF13676.6 gi|284166084|ref|YP_003404363.1| - 0.076 13.6 0.3 9.6 6.9 0.0 2.6 3 0 0 3 3 3 0 TIR domain HATPase_c PF02518.26 gi|284166085|ref|YP_003404364.1| - 1.6e-12 47.9 0.0 2.7e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284166085|ref|YP_003404364.1| - 1.1e-09 38.3 0.1 1.8e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|284166085|ref|YP_003404364.1| - 0.0014 18.6 1.8 0.0028 17.6 0.3 2.2 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|284166085|ref|YP_003404364.1| - 0.002 17.7 0.5 0.0028 17.2 0.1 1.5 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|284166085|ref|YP_003404364.1| - 0.0038 17.1 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|284166085|ref|YP_003404364.1| - 0.004 17.0 0.0 0.0076 16.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.6 gi|284166085|ref|YP_003404364.1| - 0.045 13.4 0.3 0.1 12.4 0.3 1.6 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain ATP_bind_3 PF01171.20 gi|284166087|ref|YP_003404366.1| - 5.4e-13 49.1 0.0 8.4e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|284166087|ref|YP_003404366.1| - 2.7e-05 24.3 0.0 4.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.17 gi|284166087|ref|YP_003404366.1| - 0.00014 21.0 0.0 0.00026 20.2 0.0 1.3 1 0 0 1 1 1 1 NAD synthase zn-ribbon_14 PF16503.5 gi|284166087|ref|YP_003404366.1| - 0.00032 20.1 4.0 0.00032 20.1 4.0 3.2 4 0 0 4 4 4 1 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|284166087|ref|YP_003404366.1| - 0.0014 17.5 0.0 0.002 17.0 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Zn-ribbon_8 PF09723.10 gi|284166087|ref|YP_003404366.1| - 0.25 11.5 3.0 1.4 9.1 0.0 3.5 4 0 0 4 4 4 0 Zinc ribbon domain RecR PF02132.15 gi|284166087|ref|YP_003404366.1| - 0.34 10.5 8.5 0.21 11.2 3.4 3.1 3 0 0 3 3 3 0 RecR protein Tubulin PF00091.25 gi|284166088|ref|YP_003404367.1| - 5.5e-38 131.2 3.1 1.7e-37 129.6 3.1 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|284166088|ref|YP_003404367.1| - 1.3e-35 121.5 5.0 2.3e-35 120.8 0.7 3.0 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ZT_dimer PF16916.5 gi|284166088|ref|YP_003404367.1| - 0.041 14.0 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter Csm1_B PF18211.1 gi|284166088|ref|YP_003404367.1| - 0.091 12.6 0.0 0.48 10.3 0.0 2.2 2 0 0 2 2 2 0 Csm1 subunit domain B RHH_1 PF01402.21 gi|284166089|ref|YP_003404368.1| - 5.4e-08 32.5 0.1 6.3e-08 32.3 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|284166089|ref|YP_003404368.1| - 3.5e-05 23.9 0.0 3.7e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family GIT1_C PF12205.8 gi|284166089|ref|YP_003404368.1| - 0.074 13.2 0.0 0.077 13.1 0.0 1.1 1 0 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term zinc_ribbon_2 PF13240.6 gi|284166090|ref|YP_003404369.1| - 2.9e-08 33.1 15.2 2e-05 24.1 5.5 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|284166090|ref|YP_003404369.1| - 9.8e-08 31.9 9.5 2.1e-07 30.9 9.5 1.6 1 1 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|284166090|ref|YP_003404369.1| - 6.7e-07 28.5 10.9 0.00035 19.9 4.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|284166090|ref|YP_003404369.1| - 7e-06 26.7 8.1 0.001 19.8 1.0 2.2 2 0 0 2 2 2 2 zinc-ribbon family RHH_1 PF01402.21 gi|284166090|ref|YP_003404369.1| - 0.00034 20.4 11.3 0.0012 18.7 3.2 3.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-NADH-PPase PF09297.11 gi|284166090|ref|YP_003404369.1| - 0.0014 18.3 10.4 0.18 11.5 0.1 3.6 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain zf_UBZ PF18439.1 gi|284166090|ref|YP_003404369.1| - 0.015 14.9 3.9 12 5.5 0.2 3.4 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger CcdA PF07362.12 gi|284166090|ref|YP_003404369.1| - 0.038 14.4 1.3 0.078 13.4 0.4 1.9 1 1 1 2 2 2 0 Post-segregation antitoxin CcdA zinc-ribbons_6 PF07191.12 gi|284166090|ref|YP_003404369.1| - 0.047 13.7 8.6 0.39 10.7 6.0 2.2 1 1 1 2 2 2 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|284166090|ref|YP_003404369.1| - 0.069 13.1 11.2 3.9 7.5 2.6 4.1 3 1 0 3 3 3 0 Nudix N-terminal PolC_DP2 PF03833.13 gi|284166090|ref|YP_003404369.1| - 0.083 10.7 2.4 0.1 10.4 2.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Cys_rich_KTR PF14205.6 gi|284166090|ref|YP_003404369.1| - 0.12 12.2 3.1 7.9 6.4 0.0 2.6 3 0 0 3 3 2 0 Cysteine-rich KTR HypA PF01155.19 gi|284166090|ref|YP_003404369.1| - 0.14 12.2 10.0 0.1 12.6 2.1 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284166090|ref|YP_003404369.1| - 0.32 11.1 12.6 0.3 11.2 2.5 3.4 2 1 1 3 3 3 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|284166090|ref|YP_003404369.1| - 0.36 11.0 13.2 3.8 7.8 0.3 3.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|284166090|ref|YP_003404369.1| - 0.38 10.9 14.1 0.26 11.4 4.5 2.4 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 VapB_antitoxin PF09957.9 gi|284166090|ref|YP_003404369.1| - 0.51 10.3 4.2 1.1 9.2 2.9 2.2 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB NOB1_Zn_bind PF08772.11 gi|284166090|ref|YP_003404369.1| - 0.55 10.4 11.4 0.98 9.6 4.6 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_L32p PF01783.23 gi|284166090|ref|YP_003404369.1| - 1.1 9.5 4.4 0.79 10.0 1.5 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family HscB_4_cys PF18256.1 gi|284166090|ref|YP_003404369.1| - 5.5 6.9 16.5 0.21 11.4 3.9 2.8 1 1 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif zf-ISL3 PF14690.6 gi|284166090|ref|YP_003404369.1| - 5.5 7.7 13.9 17 6.2 0.8 3.6 2 1 2 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 MR_MLE_C PF13378.6 gi|284166091|ref|YP_003404370.1| - 3.9e-43 147.6 0.3 5.2e-43 147.2 0.3 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284166091|ref|YP_003404370.1| - 5.6e-08 33.0 0.0 9e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PAS_4 PF08448.10 gi|284166092|ref|YP_003404371.1| - 1.2e-56 189.7 25.7 1.2e-14 54.5 1.9 5.8 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|284166092|ref|YP_003404371.1| - 1.8e-44 150.3 0.1 4.6e-10 39.7 0.0 6.0 6 0 0 6 6 6 5 PAS domain PAS PF00989.25 gi|284166092|ref|YP_003404371.1| - 5.5e-44 148.8 5.2 2.4e-10 40.4 0.1 6.2 6 0 0 6 6 6 5 PAS fold PAS_3 PF08447.12 gi|284166092|ref|YP_003404371.1| - 4.9e-33 113.3 7.4 2.8e-19 69.2 0.0 7.3 7 1 0 7 7 7 4 PAS fold HATPase_c PF02518.26 gi|284166092|ref|YP_003404371.1| - 3.5e-30 104.8 0.0 2.1e-29 102.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|284166092|ref|YP_003404371.1| - 2.7e-23 81.5 11.0 3.8e-05 23.6 0.1 6.3 6 0 0 6 6 6 5 PAS domain GAF_2 PF13185.6 gi|284166092|ref|YP_003404371.1| - 5.3e-17 62.4 10.1 5.5e-15 55.9 0.3 4.7 4 1 0 4 4 4 1 GAF domain PAS_7 PF12860.7 gi|284166092|ref|YP_003404371.1| - 1.1e-13 51.4 5.6 0.006 16.7 0.0 6.5 5 2 0 5 5 5 4 PAS fold HisKA PF00512.25 gi|284166092|ref|YP_003404371.1| - 2.1e-11 43.7 2.5 6.7e-11 42.1 0.2 3.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|284166092|ref|YP_003404371.1| - 4.1e-05 23.9 0.0 0.00014 22.3 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|284166092|ref|YP_003404371.1| - 0.002 18.0 0.0 0.048 13.6 0.0 2.4 1 1 0 1 1 1 1 GHKL domain PAS_11 PF14598.6 gi|284166092|ref|YP_003404371.1| - 0.081 13.1 0.0 5.1 7.3 0.0 2.9 3 0 0 3 3 2 0 PAS domain TetR_C_28 PF17937.1 gi|284166092|ref|YP_003404371.1| - 0.27 11.7 8.9 3 8.4 2.0 4.2 4 0 0 4 4 4 0 Tetracyclin repressor-like, C-terminal domain zf-RRN7 PF11781.8 gi|284166093|ref|YP_003404372.1| - 0.0053 16.4 2.2 0.18 11.5 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2795 PF11387.8 gi|284166094|ref|YP_003404373.1| - 0.041 14.1 0.0 0.18 12.0 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2795) eIF-5_eIF-2B PF01873.17 gi|284166095|ref|YP_003404374.1| - 1.6e-32 111.8 0.0 2.5e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|284166095|ref|YP_003404374.1| - 1.6e-08 34.4 0.8 3e-08 33.5 0.8 1.5 1 0 0 1 1 1 1 TRAM domain CBM_4_9 PF02018.17 gi|284166095|ref|YP_003404374.1| - 0.016 15.5 0.1 0.027 14.7 0.1 1.4 1 0 0 1 1 1 0 Carbohydrate binding domain Nudix_N_2 PF14803.6 gi|284166095|ref|YP_003404374.1| - 0.046 13.7 1.6 0.11 12.4 1.6 1.7 1 0 0 1 1 1 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|284166095|ref|YP_003404374.1| - 0.072 13.5 0.3 0.65 10.4 0.3 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|284166095|ref|YP_003404374.1| - 0.12 12.5 0.4 0.25 11.5 0.4 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284166095|ref|YP_003404374.1| - 0.14 11.6 0.4 4.8 6.7 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YyzF PF14116.6 gi|284166095|ref|YP_003404374.1| - 1.9 8.6 3.8 1 9.5 1.1 2.0 2 1 0 2 2 2 0 YyzF-like protein HTH_Crp_2 PF13545.6 gi|284166096|ref|YP_003404375.1| - 0.00037 20.4 0.1 0.0011 18.9 0.0 1.8 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284166096|ref|YP_003404375.1| - 0.0027 17.6 0.0 0.013 15.4 0.0 2.1 1 1 1 2 2 2 1 MarR family GntR PF00392.21 gi|284166096|ref|YP_003404375.1| - 0.0055 16.3 0.2 0.014 15.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|284166096|ref|YP_003404375.1| - 0.009 16.1 0.0 2.3 8.4 0.0 2.5 2 0 0 2 2 2 1 DprA winged helix domain HTH_IclR PF09339.10 gi|284166096|ref|YP_003404375.1| - 0.014 15.2 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284166096|ref|YP_003404375.1| - 0.016 14.8 0.0 0.048 13.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284166096|ref|YP_003404375.1| - 0.029 14.2 0.0 0.1 12.5 0.0 2.0 1 1 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|284166096|ref|YP_003404375.1| - 0.055 13.8 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor Mnd1 PF03962.15 gi|284166096|ref|YP_003404375.1| - 0.17 12.2 0.0 0.27 11.6 0.0 1.3 1 0 0 1 1 1 0 Mnd1 HTH domain Hydrolase PF00702.26 gi|284166097|ref|YP_003404376.1| - 1.1e-09 38.9 0.0 2.3e-09 37.9 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284166097|ref|YP_003404376.1| - 1.7e-05 25.0 0.0 2.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284166097|ref|YP_003404376.1| - 0.0098 15.9 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|284166097|ref|YP_003404376.1| - 0.075 13.4 0.1 0.098 13.0 0.1 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase CobD_Cbib PF03186.13 gi|284166098|ref|YP_003404377.1| - 9.7e-78 261.2 14.5 9.7e-78 261.2 14.5 1.4 1 1 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|284166099|ref|YP_003404378.1| - 2.3e-39 135.7 17.2 2.7e-39 135.5 17.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|284166100|ref|YP_003404379.1| - 3.5e-15 56.7 2.8 8e-15 55.5 2.5 1.6 1 1 1 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.19 gi|284166100|ref|YP_003404379.1| - 0.005 16.6 0.1 0.0067 16.2 0.1 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DBI_PRT PF02277.17 gi|284166101|ref|YP_003404380.1| - 3.3e-07 29.9 2.3 4.8e-07 29.3 2.3 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase DeoRC PF00455.22 gi|284166101|ref|YP_003404380.1| - 0.64 9.9 2.8 0.96 9.4 0.6 2.1 2 0 0 2 2 2 0 DeoR C terminal sensor domain Aminotran_1_2 PF00155.21 gi|284166102|ref|YP_003404381.1| - 1.9e-36 126.0 0.0 2.1e-36 125.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|284166102|ref|YP_003404381.1| - 0.056 12.7 0.0 0.088 12.1 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CbiZ PF01955.18 gi|284166103|ref|YP_003404382.1| - 2.3e-44 151.8 4.2 3.5e-44 151.2 4.2 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Amidohydro_2 PF04909.14 gi|284166107|ref|YP_003404386.1| - 3.7e-22 79.5 7.7 9.6e-22 78.1 7.7 1.6 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|284166107|ref|YP_003404386.1| - 0.00096 18.6 0.0 0.0058 16.1 0.0 2.2 1 1 0 1 1 1 1 TatD related DNase PRC PF05239.16 gi|284166108|ref|YP_003404387.1| - 0.039 14.0 2.1 0.046 13.8 2.0 1.5 1 1 0 1 1 1 0 PRC-barrel domain DUF2171 PF09939.9 gi|284166108|ref|YP_003404387.1| - 0.076 13.3 1.4 0.27 11.5 1.4 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) FAA_hydrolase PF01557.18 gi|284166109|ref|YP_003404388.1| - 9.7e-28 97.3 0.3 1.2e-27 97.0 0.3 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|284166109|ref|YP_003404388.1| - 0.043 14.7 0.0 0.14 13.1 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF2437) eIF-1a PF01176.19 gi|284166112|ref|YP_003404391.1| - 3.6e-19 68.3 0.1 4.2e-19 68.1 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 HTH_24 PF13412.6 gi|284166113|ref|YP_003404392.1| - 2.9e-12 45.9 0.4 4.8e-12 45.2 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284166113|ref|YP_003404392.1| - 1e-11 44.4 1.5 1.9e-11 43.6 1.5 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284166113|ref|YP_003404392.1| - 2.6e-08 33.7 0.1 4.9e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|284166113|ref|YP_003404392.1| - 2.3e-07 30.8 0.0 4.5e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284166113|ref|YP_003404392.1| - 5.3e-06 26.2 0.1 1.3e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284166113|ref|YP_003404392.1| - 0.00017 21.2 0.6 0.00078 19.1 0.0 2.2 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|284166113|ref|YP_003404392.1| - 0.00087 19.4 0.2 0.0085 16.2 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284166113|ref|YP_003404392.1| - 0.00099 18.6 0.1 0.0036 16.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|284166113|ref|YP_003404392.1| - 0.0021 17.8 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|284166113|ref|YP_003404392.1| - 0.0022 17.6 0.0 0.0043 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 gi|284166113|ref|YP_003404392.1| - 0.0024 17.4 0.4 0.0063 16.0 0.1 1.8 2 0 0 2 2 2 1 CodY helix-turn-helix domain MarR PF01047.22 gi|284166113|ref|YP_003404392.1| - 0.0026 17.6 0.0 0.005 16.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284166113|ref|YP_003404392.1| - 0.003 17.4 0.0 0.0072 16.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.15 gi|284166113|ref|YP_003404392.1| - 0.0069 16.0 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|284166113|ref|YP_003404392.1| - 0.0078 16.5 0.0 0.014 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|284166113|ref|YP_003404392.1| - 0.011 15.7 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|284166113|ref|YP_003404392.1| - 0.012 15.5 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284166113|ref|YP_003404392.1| - 0.012 15.4 0.0 0.037 13.8 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|284166113|ref|YP_003404392.1| - 0.017 15.6 0.0 0.072 13.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|284166113|ref|YP_003404392.1| - 0.018 15.5 0.1 0.041 14.4 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|284166113|ref|YP_003404392.1| - 0.021 14.5 0.1 0.049 13.3 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|284166113|ref|YP_003404392.1| - 0.024 14.0 0.1 0.045 13.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|284166113|ref|YP_003404392.1| - 0.032 13.8 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.19 gi|284166113|ref|YP_003404392.1| - 0.042 14.0 0.0 0.08 13.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|284166113|ref|YP_003404392.1| - 0.043 13.6 0.1 0.072 12.9 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain FaeA PF04703.12 gi|284166113|ref|YP_003404392.1| - 0.11 12.8 0.0 0.28 11.6 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein HTH_47 PF16221.5 gi|284166113|ref|YP_003404392.1| - 0.16 11.5 0.1 9.1 5.9 0.1 2.2 2 0 0 2 2 2 0 winged helix-turn-helix CSD PF00313.22 gi|284166114|ref|YP_003404393.1| - 4.5e-19 68.1 0.1 4.9e-19 67.9 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|284166114|ref|YP_003404393.1| - 0.012 15.5 0.1 0.014 15.3 0.1 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|284166114|ref|YP_003404393.1| - 0.05 13.3 1.9 0.076 12.7 1.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain FbpA PF05833.11 gi|284166116|ref|YP_003404395.1| - 6.1e-78 262.6 0.0 1.3e-77 261.6 0.0 1.4 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|284166116|ref|YP_003404395.1| - 7.9e-23 81.2 0.0 1.6e-22 80.2 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|284166116|ref|YP_003404395.1| - 0.00034 20.8 0.0 0.0015 18.7 0.0 2.1 2 1 0 2 2 2 1 NFACT protein RNA binding domain DUF2786 PF10979.8 gi|284166116|ref|YP_003404395.1| - 0.11 12.4 0.3 0.35 10.8 0.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2786) Bap31_Bap29_C PF18035.1 gi|284166116|ref|YP_003404395.1| - 0.13 12.3 0.7 0.36 10.9 0.7 1.8 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain BssS PF13991.6 gi|284166117|ref|YP_003404396.1| - 0.014 15.4 0.2 0.021 14.9 0.2 1.4 1 1 0 1 1 1 0 BssS protein family AMIN PF11741.8 gi|284166117|ref|YP_003404396.1| - 0.09 12.9 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 AMIN domain NIR_SIR PF01077.22 gi|284166118|ref|YP_003404397.1| - 5.9e-44 149.4 0.0 8.4e-35 119.6 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|284166118|ref|YP_003404397.1| - 2.7e-35 120.1 0.5 4.9e-16 58.3 0.1 3.5 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain CBS PF00571.28 gi|284166121|ref|YP_003404400.1| - 6.3e-21 74.6 3.1 2e-11 44.2 0.3 2.1 2 0 0 2 2 2 2 CBS domain DUF4231 PF14015.6 gi|284166122|ref|YP_003404401.1| - 5.2 7.6 5.7 0.5 10.9 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Tetraspanin PF00335.20 gi|284166122|ref|YP_003404401.1| - 9.7 5.8 7.4 0.59 9.8 1.7 1.7 2 0 0 2 2 2 0 Tetraspanin family DUF418 PF04235.12 gi|284166123|ref|YP_003404402.1| - 2.1e-47 161.1 15.5 2.1e-47 161.1 15.5 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF418) eRF1_1 PF03463.15 gi|284166124|ref|YP_003404403.1| - 1.3e-25 89.8 0.1 2.4e-25 89.0 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|284166124|ref|YP_003404403.1| - 3.6e-23 82.2 0.3 1.3e-22 80.4 0.0 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|284166124|ref|YP_003404403.1| - 3.6e-10 40.3 0.6 2.5e-08 34.3 0.6 2.3 1 1 0 1 1 1 1 eRF1 domain 2 HTH_20 PF12840.7 gi|284166126|ref|YP_003404405.1| - 0.00073 19.5 0.1 0.0041 17.1 0.0 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain PAS_5 PF07310.13 gi|284166126|ref|YP_003404405.1| - 0.015 15.1 0.1 1.4 8.7 0.0 3.1 2 1 0 3 3 3 0 PAS domain TF_Zn_Ribbon PF08271.12 gi|284166126|ref|YP_003404405.1| - 0.035 13.6 2.3 0.44 10.1 0.5 2.7 2 1 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|284166126|ref|YP_003404405.1| - 0.24 11.4 1.1 0.66 10.0 0.0 2.1 2 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|284166126|ref|YP_003404405.1| - 0.59 10.1 7.5 1.2 9.1 1.5 3.4 3 0 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|284166126|ref|YP_003404405.1| - 0.89 9.6 5.1 0.96 9.5 0.6 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Anti-TRAP PF15777.5 gi|284166126|ref|YP_003404405.1| - 1.3 9.1 3.5 1.2 9.1 0.1 2.5 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein TrmB PF01978.19 gi|284166127|ref|YP_003404406.1| - 2.2e-19 69.1 0.1 6.3e-19 67.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284166127|ref|YP_003404406.1| - 0.00032 20.4 0.0 0.00078 19.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|284166127|ref|YP_003404406.1| - 0.00072 19.6 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|284166127|ref|YP_003404406.1| - 0.008 16.1 0.1 0.016 15.1 0.1 1.5 1 0 0 1 1 1 1 MarR family Regulator_TrmB PF11495.8 gi|284166127|ref|YP_003404406.1| - 0.01 15.0 0.1 0.013 14.6 0.1 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB HTH_27 PF13463.6 gi|284166127|ref|YP_003404406.1| - 0.012 16.1 0.0 0.03 14.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|284166127|ref|YP_003404406.1| - 0.019 15.3 0.1 0.09 13.1 0.0 2.1 2 1 1 3 3 3 0 Penicillinase repressor Cdc6_C PF09079.11 gi|284166127|ref|YP_003404406.1| - 0.12 12.3 0.1 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain MMPL PF03176.15 gi|284166128|ref|YP_003404407.1| - 1.8e-31 109.3 25.2 3.7e-18 65.5 3.4 3.2 3 0 0 3 3 3 2 MMPL family SecD_SecF PF02355.16 gi|284166128|ref|YP_003404407.1| - 9e-05 21.9 25.1 0.00094 18.6 8.3 2.6 2 0 0 2 2 2 2 Protein export membrane protein Sterol-sensing PF12349.8 gi|284166128|ref|YP_003404407.1| - 0.00054 19.8 13.6 0.038 13.8 2.5 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|284166128|ref|YP_003404407.1| - 0.014 13.5 27.5 0.045 11.8 9.4 2.7 2 1 0 2 2 2 0 Patched family EF-hand_5 PF13202.6 gi|284166128|ref|YP_003404407.1| - 0.073 12.6 0.3 0.2 11.2 0.3 1.8 1 0 0 1 1 1 0 EF hand ACR_tran PF00873.19 gi|284166128|ref|YP_003404407.1| - 1.9 6.0 26.1 0.029 12.0 7.2 2.4 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family Lactamase_B_2 PF12706.7 gi|284166129|ref|YP_003404408.1| - 3.1e-16 59.5 0.4 3.8e-16 59.2 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284166129|ref|YP_003404408.1| - 1e-11 45.3 2.2 1.8e-11 44.4 2.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|284166129|ref|YP_003404408.1| - 0.039 13.8 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain ADH_N PF08240.12 gi|284166130|ref|YP_003404409.1| - 2.9e-29 101.1 1.1 2.9e-29 101.1 1.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284166130|ref|YP_003404409.1| - 8.1e-25 87.3 0.1 1.5e-24 86.5 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284166130|ref|YP_003404409.1| - 8.3e-05 23.6 0.0 0.00017 22.6 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|284166130|ref|YP_003404409.1| - 0.00018 20.8 0.6 0.00035 20.0 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|284166130|ref|YP_003404409.1| - 0.011 15.0 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|284166130|ref|YP_003404409.1| - 0.016 14.6 0.1 0.06 12.8 0.2 1.8 2 0 0 2 2 2 0 short chain dehydrogenase Methyltransf_11 PF08241.12 gi|284166130|ref|YP_003404409.1| - 0.077 13.6 0.1 0.17 12.6 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain ELFV_dehydrog PF00208.21 gi|284166130|ref|YP_003404409.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_25 PF13649.6 gi|284166130|ref|YP_003404409.1| - 0.12 13.2 0.2 0.21 12.3 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain Polysacc_deac_1 PF01522.21 gi|284166131|ref|YP_003404410.1| - 5.3e-09 36.0 0.1 7.9e-08 32.2 0.1 2.2 1 1 0 1 1 1 1 Polysaccharide deacetylase DEAD_assoc PF08494.11 gi|284166133|ref|YP_003404412.1| - 1.7e-51 174.7 1.8 3.1e-51 173.9 0.7 2.0 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|284166133|ref|YP_003404412.1| - 5.1e-29 101.3 0.0 6.2e-28 97.7 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|284166133|ref|YP_003404412.1| - 1.2e-18 67.4 0.1 4.9e-17 62.3 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|284166133|ref|YP_003404412.1| - 1.4e-06 28.5 0.0 7.6e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|284166133|ref|YP_003404412.1| - 0.00061 20.1 0.1 0.0067 16.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain SNF2_N PF00176.23 gi|284166133|ref|YP_003404412.1| - 0.034 12.9 0.0 0.08 11.6 0.0 1.6 2 0 0 2 2 2 0 SNF2 family N-terminal domain UvrD-helicase PF00580.21 gi|284166133|ref|YP_003404412.1| - 0.047 13.2 0.0 7.5 6.0 0.0 2.5 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|284166133|ref|YP_003404412.1| - 0.086 13.2 0.0 0.55 10.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain HTH_ParB PF17762.1 gi|284166133|ref|YP_003404412.1| - 0.13 12.1 0.1 0.32 10.9 0.1 1.7 1 0 0 1 1 1 0 HTH domain found in ParB protein Amidohydro_2 PF04909.14 gi|284166134|ref|YP_003404413.1| - 1.4e-52 179.3 0.8 1.7e-52 179.0 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|284166134|ref|YP_003404413.1| - 0.00031 20.2 0.0 0.012 15.0 0.0 2.1 1 1 0 1 1 1 1 TatD related DNase LPD38 PF18857.1 gi|284166134|ref|YP_003404413.1| - 0.05 13.7 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 Large polyvalent protein associated domain 38 IclR PF01614.18 gi|284166135|ref|YP_003404414.1| - 1.9e-32 111.8 0.0 2.9e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284166135|ref|YP_003404414.1| - 1.3e-13 50.5 0.0 2.9e-13 49.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284166135|ref|YP_003404414.1| - 4.8e-10 38.8 0.0 9.5e-10 37.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284166135|ref|YP_003404414.1| - 4.9e-09 36.0 0.0 1.1e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|284166135|ref|YP_003404414.1| - 3.2e-08 33.5 0.1 1.3e-07 31.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|284166135|ref|YP_003404414.1| - 2e-07 30.8 0.0 4e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284166135|ref|YP_003404414.1| - 6e-05 22.8 0.0 0.00017 21.4 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284166135|ref|YP_003404414.1| - 9.6e-05 22.3 0.1 0.00029 20.7 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_23 PF13384.6 gi|284166135|ref|YP_003404414.1| - 0.00032 20.4 0.0 0.00092 18.9 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|284166135|ref|YP_003404414.1| - 0.00037 20.3 0.0 0.00095 18.9 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|284166135|ref|YP_003404414.1| - 0.00087 19.0 0.0 0.0026 17.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284166135|ref|YP_003404414.1| - 0.0011 19.4 0.2 0.0038 17.7 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|284166135|ref|YP_003404414.1| - 0.0012 18.8 0.1 0.004 17.1 0.1 2.0 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|284166135|ref|YP_003404414.1| - 0.0015 18.5 0.0 0.0038 17.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|284166135|ref|YP_003404414.1| - 0.0018 18.1 0.0 0.018 14.9 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|284166135|ref|YP_003404414.1| - 0.0022 18.2 0.0 0.0053 16.9 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|284166135|ref|YP_003404414.1| - 0.0023 17.7 0.0 0.0056 16.4 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_DeoR PF08220.12 gi|284166135|ref|YP_003404414.1| - 0.0048 16.6 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|284166135|ref|YP_003404414.1| - 0.0069 16.3 0.0 0.016 15.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|284166135|ref|YP_003404414.1| - 0.011 15.3 0.0 0.049 13.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|284166135|ref|YP_003404414.1| - 0.012 15.7 0.0 0.042 13.9 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase LexA_DNA_bind PF01726.16 gi|284166135|ref|YP_003404414.1| - 0.029 14.1 0.0 0.071 12.9 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain RelB_N PF18506.1 gi|284166135|ref|YP_003404414.1| - 0.034 14.0 0.0 0.073 12.9 0.0 1.5 1 0 0 1 1 1 0 RelB Antitoxin alpha helical domain Crp PF00325.20 gi|284166135|ref|YP_003404414.1| - 0.039 13.6 0.0 0.091 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family SpoIIID PF12116.8 gi|284166135|ref|YP_003404414.1| - 0.045 13.8 0.2 0.68 10.1 0.0 2.6 3 1 0 3 3 2 0 Stage III sporulation protein D B-block_TFIIIC PF04182.12 gi|284166135|ref|YP_003404414.1| - 0.046 13.9 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_40 PF14493.6 gi|284166135|ref|YP_003404414.1| - 0.089 13.3 0.0 0.24 11.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 gi|284166135|ref|YP_003404414.1| - 0.09 12.6 0.0 0.31 10.9 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_45 PF14947.6 gi|284166135|ref|YP_003404414.1| - 0.096 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|284166135|ref|YP_003404414.1| - 0.12 12.5 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.27 gi|284166135|ref|YP_003404414.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HD PF01966.22 gi|284166136|ref|YP_003404415.1| - 2.1e-11 44.1 0.0 3e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|284166136|ref|YP_003404415.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 HD domain EthD PF07110.11 gi|284166137|ref|YP_003404416.1| - 7.4e-25 87.9 6.3 1.9e-11 45.0 0.3 3.5 2 2 0 2 2 2 2 EthD domain MmlI PF09448.10 gi|284166137|ref|YP_003404416.1| - 3.7e-24 85.4 2.6 1.2e-11 45.1 0.2 4.0 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase ABM PF03992.16 gi|284166137|ref|YP_003404416.1| - 0.00017 21.7 2.3 0.42 10.8 0.1 3.6 2 2 1 3 3 3 2 Antibiotic biosynthesis monooxygenase DUF4543 PF15076.6 gi|284166137|ref|YP_003404416.1| - 0.022 14.9 0.1 3.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4543) Glyoxalase_4 PF13669.6 gi|284166138|ref|YP_003404417.1| - 1.3e-18 67.3 0.2 1.6e-18 67.0 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|284166138|ref|YP_003404417.1| - 2.9e-05 24.2 0.2 3.5e-05 24.0 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|284166138|ref|YP_003404417.1| - 0.017 15.3 0.0 0.032 14.4 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MmlI PF09448.10 gi|284166139|ref|YP_003404418.1| - 1.2e-13 51.5 0.1 1.4e-12 48.1 0.1 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|284166139|ref|YP_003404418.1| - 6.4e-12 46.5 2.7 2e-11 44.8 2.7 1.7 1 1 0 1 1 1 1 EthD domain TPP_enzyme_M PF00205.22 gi|284166140|ref|YP_003404419.1| - 6.1e-35 119.9 2.2 7.5e-35 119.6 0.1 2.2 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.18 gi|284166140|ref|YP_003404419.1| - 4.1e-33 114.4 0.0 9.2e-32 110.0 0.0 2.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|284166140|ref|YP_003404419.1| - 1.6e-32 112.4 1.7 1.6e-32 112.4 1.7 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Epimerase PF01370.21 gi|284166141|ref|YP_003404420.1| - 4.8e-44 150.6 0.5 6.2e-44 150.3 0.5 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284166141|ref|YP_003404420.1| - 2.7e-43 148.6 0.3 1e-42 146.7 0.3 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284166141|ref|YP_003404420.1| - 5.7e-23 81.3 0.0 7.9e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284166141|ref|YP_003404420.1| - 5.8e-14 51.9 2.1 7.4e-14 51.5 2.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284166141|ref|YP_003404420.1| - 1.9e-13 50.7 0.2 3.6e-13 49.8 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284166141|ref|YP_003404420.1| - 1.1e-11 44.4 0.6 2.1e-09 37.0 0.6 2.2 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|284166141|ref|YP_003404420.1| - 8.1e-11 41.6 0.0 1.3e-09 37.6 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|284166141|ref|YP_003404420.1| - 1.2e-06 28.2 0.3 2.2e-06 27.2 0.3 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284166141|ref|YP_003404420.1| - 3.9e-06 26.9 0.7 9.4e-06 25.7 0.7 1.7 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|284166141|ref|YP_003404420.1| - 0.00021 20.9 0.3 0.00051 19.7 0.1 1.7 2 0 0 2 2 2 1 NmrA-like family adh_short_C2 PF13561.6 gi|284166141|ref|YP_003404420.1| - 0.00054 19.6 0.7 0.00095 18.8 0.2 1.7 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase Sacchrp_dh_NADP PF03435.18 gi|284166141|ref|YP_003404420.1| - 0.062 13.6 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|284166141|ref|YP_003404420.1| - 0.087 13.0 0.2 0.45 10.7 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_M24 PF00557.24 gi|284166143|ref|YP_003404422.1| - 1.2e-29 103.6 0.1 2.1e-29 102.7 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|284166143|ref|YP_003404422.1| - 6.5e-06 26.8 0.0 1.4e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DinB PF05163.12 gi|284166143|ref|YP_003404422.1| - 0.017 15.0 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 DinB family DUF433 PF04255.14 gi|284166143|ref|YP_003404422.1| - 0.13 12.2 0.0 0.36 10.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Bac_luciferase PF00296.20 gi|284166144|ref|YP_003404423.1| - 3.1e-57 194.4 2.0 3.7e-57 194.1 2.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase 4HBT PF03061.22 gi|284166145|ref|YP_003404424.1| - 9.9e-15 54.7 0.2 1.5e-14 54.1 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|284166145|ref|YP_003404424.1| - 0.00049 20.2 0.0 0.00064 19.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) AMP-binding_C_2 PF14535.6 gi|284166146|ref|YP_003404425.1| - 1.5e-22 79.7 0.1 3.2e-22 78.7 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|284166146|ref|YP_003404425.1| - 1.1e-14 53.9 0.1 6.2e-14 51.4 0.1 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|284166146|ref|YP_003404425.1| - 0.0043 16.1 0.0 0.69 8.9 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|284166146|ref|YP_003404425.1| - 0.01 14.7 0.0 0.023 13.5 0.0 1.5 1 0 0 1 1 1 0 GH3 auxin-responsive promoter TOBE_3 PF12857.7 gi|284166146|ref|YP_003404425.1| - 0.02 14.8 0.1 0.02 14.8 0.1 2.5 3 0 0 3 3 3 0 TOBE-like domain Zn-ribbon_8 PF09723.10 gi|284166147|ref|YP_003404426.1| - 0.019 15.1 3.5 1.5 9.0 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|284166147|ref|YP_003404426.1| - 0.023 15.1 4.1 0.024 15.0 4.1 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.10 gi|284166147|ref|YP_003404426.1| - 0.041 14.0 2.0 0.052 13.7 2.0 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ISL3 PF14690.6 gi|284166147|ref|YP_003404426.1| - 0.084 13.5 1.9 0.11 13.2 1.9 1.3 1 0 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|284166147|ref|YP_003404426.1| - 0.12 11.9 6.0 0.54 9.8 6.0 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding FeS_assembly_P PF01883.19 gi|284166148|ref|YP_003404427.1| - 5.2e-22 77.8 0.7 7.7e-22 77.3 0.7 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|284166149|ref|YP_003404428.1| - 8.8e-58 195.5 0.1 1.1e-57 195.3 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|284166149|ref|YP_003404428.1| - 0.0025 17.5 0.7 0.0045 16.7 0.7 1.4 1 0 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like DUF3048 PF11258.8 gi|284166149|ref|YP_003404428.1| - 0.22 11.6 0.0 0.52 10.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3048) N-terminal domain PaaB PF06243.11 gi|284166150|ref|YP_003404429.1| - 2.9e-19 69.1 0.1 3.7e-19 68.7 0.1 1.2 1 0 0 1 1 1 1 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|284166151|ref|YP_003404430.1| - 3.5e-71 239.4 0.1 4.5e-71 239.1 0.1 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.12 gi|284166152|ref|YP_003404431.1| - 2.2e-17 62.6 0.0 3.3e-17 62.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284166152|ref|YP_003404431.1| - 6.9e-08 32.5 0.4 1.1e-07 31.9 0.4 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|284166152|ref|YP_003404431.1| - 0.026 14.1 0.0 0.23 11.0 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284166152|ref|YP_003404431.1| - 0.038 13.8 0.4 0.45 10.4 0.1 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_50 PF18024.1 gi|284166152|ref|YP_003404431.1| - 0.095 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 4HBT PF03061.22 gi|284166153|ref|YP_003404432.1| - 2.6e-13 50.1 1.4 4.9e-13 49.2 1.4 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|284166153|ref|YP_003404432.1| - 3.7e-09 36.8 0.2 4.6e-09 36.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) ABC_tran PF00005.27 gi|284166154|ref|YP_003404433.1| - 9.1e-36 123.4 0.1 1.3e-35 122.9 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166154|ref|YP_003404433.1| - 2.1e-10 40.9 0.8 2.4e-05 24.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284166154|ref|YP_003404433.1| - 0.0018 18.0 0.1 0.0049 16.6 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284166154|ref|YP_003404433.1| - 0.0032 17.0 0.6 0.069 12.6 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284166154|ref|YP_003404433.1| - 0.0036 17.7 0.1 0.0051 17.2 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|284166154|ref|YP_003404433.1| - 0.0055 15.9 0.4 0.13 11.5 0.1 2.3 2 1 1 3 3 3 1 NB-ARC domain AAA_30 PF13604.6 gi|284166154|ref|YP_003404433.1| - 0.0073 16.1 0.7 0.016 14.9 0.7 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|284166154|ref|YP_003404433.1| - 0.0087 15.8 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|284166154|ref|YP_003404433.1| - 0.0097 16.4 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284166154|ref|YP_003404433.1| - 0.026 14.8 0.8 0.14 12.4 0.8 2.1 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|284166154|ref|YP_003404433.1| - 0.032 14.0 0.1 0.059 13.2 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal PRK PF00485.18 gi|284166154|ref|YP_003404433.1| - 0.054 13.2 0.5 0.31 10.7 0.1 2.2 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family DUF3584 PF12128.8 gi|284166154|ref|YP_003404433.1| - 0.077 10.5 0.2 0.11 10.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Mg_chelatase PF01078.21 gi|284166154|ref|YP_003404433.1| - 0.11 11.9 0.2 0.8 9.0 0.0 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|284166154|ref|YP_003404433.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|284166154|ref|YP_003404433.1| - 0.12 12.4 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|284166154|ref|YP_003404433.1| - 0.14 12.5 0.3 1.6 9.0 0.3 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|284166154|ref|YP_003404433.1| - 0.15 12.1 0.3 0.23 11.6 0.3 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|284166154|ref|YP_003404433.1| - 0.16 11.3 0.0 0.41 9.9 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin ABC_ATPase PF09818.9 gi|284166154|ref|YP_003404433.1| - 0.57 8.9 2.7 7.6 5.2 0.2 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.27 gi|284166155|ref|YP_003404434.1| - 3.4e-28 98.9 0.0 5e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|284166155|ref|YP_003404434.1| - 9e-10 38.2 0.2 1.9e-09 37.2 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|284166155|ref|YP_003404434.1| - 3.7e-05 24.3 0.9 5.3e-05 23.8 0.9 1.5 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|284166155|ref|YP_003404434.1| - 0.00018 21.4 3.0 0.0041 17.0 0.4 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|284166155|ref|YP_003404434.1| - 0.00037 20.2 0.0 0.00057 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284166155|ref|YP_003404434.1| - 0.0073 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284166155|ref|YP_003404434.1| - 0.024 14.1 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|284166155|ref|YP_003404434.1| - 0.041 14.0 0.3 0.093 12.8 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|284166155|ref|YP_003404434.1| - 0.043 13.5 0.0 0.058 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|284166155|ref|YP_003404434.1| - 0.098 12.6 0.0 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase BPD_transp_2 PF02653.16 gi|284166156|ref|YP_003404435.1| - 2.6e-83 279.3 87.0 5.8e-43 147.0 40.1 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|284166156|ref|YP_003404435.1| - 0.17 11.7 0.6 3.4 7.4 0.0 2.6 3 0 0 3 3 3 0 Cytochrome oxidase complex assembly protein 1 Peripla_BP_6 PF13458.6 gi|284166157|ref|YP_003404436.1| - 3e-63 214.6 2.3 3.4e-63 214.4 2.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|284166157|ref|YP_003404436.1| - 3.1e-27 95.5 0.7 3.8e-27 95.2 0.7 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|284166157|ref|YP_003404436.1| - 1.8e-12 47.1 0.1 2.2e-12 46.8 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Usp PF00582.26 gi|284166158|ref|YP_003404437.1| - 4.7e-14 53.1 0.1 5.6e-13 49.6 0.1 1.9 1 1 0 1 1 1 1 Universal stress protein family B12-binding PF02310.19 gi|284166158|ref|YP_003404437.1| - 0.049 13.7 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain HMA PF00403.26 gi|284166158|ref|YP_003404437.1| - 0.071 13.6 0.0 0.18 12.3 0.0 1.7 2 0 0 2 2 2 0 Heavy-metal-associated domain Acetyltransf_1 PF00583.25 gi|284166159|ref|YP_003404438.1| - 1.2e-15 57.7 0.0 1.7e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284166159|ref|YP_003404438.1| - 9.1e-15 54.7 0.0 1.2e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284166159|ref|YP_003404438.1| - 4.5e-11 43.0 0.0 6.8e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166159|ref|YP_003404438.1| - 2.6e-07 30.5 0.0 6e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|284166159|ref|YP_003404438.1| - 4.3e-06 27.5 0.0 5.1e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166159|ref|YP_003404438.1| - 1.7e-05 24.9 0.0 0.013 15.6 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|284166159|ref|YP_003404438.1| - 4.7e-05 23.1 0.1 7.3e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284166159|ref|YP_003404438.1| - 0.00057 20.0 0.0 0.0008 19.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284166159|ref|YP_003404438.1| - 0.0026 17.8 0.0 0.0046 17.1 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase YcaO PF02624.16 gi|284166159|ref|YP_003404438.1| - 0.036 13.3 0.2 0.22 10.7 0.1 1.8 1 1 1 2 2 2 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding FXMR_C2 PF16098.5 gi|284166159|ref|YP_003404438.1| - 0.052 14.0 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 Fragile X-related mental retardation protein C-terminal region 2 GNAT_acetyltran PF12746.7 gi|284166159|ref|YP_003404438.1| - 0.057 13.0 0.0 0.075 12.6 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase FMN_dh PF01070.18 gi|284166159|ref|YP_003404438.1| - 0.062 12.3 0.0 0.085 11.9 0.0 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase Acetyltransf_18 PF18014.1 gi|284166159|ref|YP_003404438.1| - 0.17 11.7 0.0 0.52 10.2 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AMP-binding_C_2 PF14535.6 gi|284166160|ref|YP_003404439.1| - 3.7e-21 75.3 0.0 9.2e-21 74.0 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|284166160|ref|YP_003404439.1| - 4.6e-16 58.4 0.2 2.6e-15 56.0 0.2 2.0 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|284166160|ref|YP_003404439.1| - 0.00044 19.4 0.0 0.19 10.7 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|284166160|ref|YP_003404439.1| - 0.0037 16.2 0.0 0.0072 15.2 0.0 1.4 2 0 0 2 2 2 1 GH3 auxin-responsive promoter TOBE_3 PF12857.7 gi|284166160|ref|YP_003404439.1| - 0.054 13.4 0.2 0.37 10.7 0.0 2.4 2 0 0 2 2 2 0 TOBE-like domain MaoC_dehydratas PF01575.19 gi|284166161|ref|YP_003404440.1| - 7.3e-19 67.5 0.0 9.5e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284166161|ref|YP_003404440.1| - 1.7e-06 28.2 0.2 4e-06 27.0 0.2 1.5 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Abhydrolase_1 PF00561.20 gi|284166162|ref|YP_003404441.1| - 6.1e-20 71.9 0.1 6.1e-15 55.6 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284166162|ref|YP_003404441.1| - 4.8e-18 66.6 5.5 5.8e-18 66.3 5.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284166162|ref|YP_003404441.1| - 2.5e-10 40.0 0.0 3.3e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|284166162|ref|YP_003404441.1| - 0.0032 16.2 0.0 0.0035 16.1 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 gi|284166162|ref|YP_003404441.1| - 0.18 11.9 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein HTH_24 PF13412.6 gi|284166163|ref|YP_003404442.1| - 0.00017 21.1 0.1 0.02 14.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.18 gi|284166163|ref|YP_003404442.1| - 0.0014 18.9 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.6 gi|284166163|ref|YP_003404442.1| - 0.014 16.0 0.0 0.18 12.5 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain 4HBT PF03061.22 gi|284166164|ref|YP_003404443.1| - 2.5e-14 53.4 0.1 5.3e-14 52.3 0.1 1.5 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|284166164|ref|YP_003404443.1| - 7e-09 35.9 0.0 1.2e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|284166164|ref|YP_003404443.1| - 0.0057 16.9 1.0 0.0085 16.4 0.2 1.6 1 1 0 1 1 1 1 Thioesterase-like superfamily DUF903 PF06004.12 gi|284166164|ref|YP_003404443.1| - 0.098 12.6 0.1 0.23 11.4 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF903) 3HCDH_N PF02737.18 gi|284166165|ref|YP_003404444.1| - 7.1e-65 218.3 0.0 9.9e-65 217.8 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|284166165|ref|YP_003404444.1| - 5.9e-54 183.0 0.0 8e-54 182.6 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|284166165|ref|YP_003404444.1| - 7.3e-44 148.3 1.4 1.5e-20 73.6 0.0 3.6 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|284166165|ref|YP_003404444.1| - 5.9e-32 111.5 0.1 5.9e-27 95.0 0.0 3.0 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|284166165|ref|YP_003404444.1| - 0.00093 19.2 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|284166165|ref|YP_003404444.1| - 0.00093 19.4 0.1 0.0028 17.8 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|284166165|ref|YP_003404444.1| - 0.0019 17.8 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|284166165|ref|YP_003404444.1| - 0.0063 17.1 0.6 0.028 15.0 0.6 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|284166165|ref|YP_003404444.1| - 0.14 11.4 0.1 0.26 10.5 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase APH PF01636.23 gi|284166166|ref|YP_003404445.1| - 1.2e-44 153.1 3.7 1.7e-44 152.5 3.7 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|284166166|ref|YP_003404445.1| - 0.015 14.7 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Ecdysteroid kinase DUF1679 PF07914.11 gi|284166166|ref|YP_003404445.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) HAD_2 PF13419.6 gi|284166167|ref|YP_003404446.1| - 9.9e-25 87.6 0.0 1.2e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284166167|ref|YP_003404446.1| - 1.3e-14 55.0 0.5 4.1e-14 53.4 0.5 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284166167|ref|YP_003404446.1| - 4.1e-12 46.0 0.1 8.3e-12 45.0 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|284166167|ref|YP_003404446.1| - 0.001 19.5 0.2 0.0012 19.2 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase FMN_dh PF01070.18 gi|284166168|ref|YP_003404447.1| - 2.3e-126 421.5 0.0 2.7e-126 421.3 0.0 1.0 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.14 gi|284166168|ref|YP_003404447.1| - 3.4e-06 26.5 0.0 0.0051 16.2 0.0 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|284166168|ref|YP_003404447.1| - 1.6e-05 24.1 0.0 3.7e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|284166168|ref|YP_003404447.1| - 0.0012 18.3 1.2 0.0019 17.7 1.2 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Glu_synthase PF01645.17 gi|284166168|ref|YP_003404447.1| - 0.0026 17.0 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase TGT PF01702.18 gi|284166168|ref|YP_003404447.1| - 0.0039 16.4 0.2 1.4 8.0 0.1 2.9 2 1 1 3 3 3 1 Queuine tRNA-ribosyltransferase His_biosynth PF00977.21 gi|284166168|ref|YP_003404447.1| - 0.08 12.4 0.0 1.8 8.0 0.0 2.6 3 0 0 3 3 3 0 Histidine biosynthesis protein adh_short_C2 PF13561.6 gi|284166169|ref|YP_003404448.1| - 2.1e-62 210.7 0.6 2.7e-62 210.4 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284166169|ref|YP_003404448.1| - 7.8e-60 201.7 0.1 1e-59 201.3 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284166169|ref|YP_003404448.1| - 2.1e-15 57.1 0.0 3e-15 56.6 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284166169|ref|YP_003404448.1| - 4.7e-07 29.5 0.1 1.6e-06 27.8 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|284166169|ref|YP_003404448.1| - 0.0031 18.0 0.1 0.006 17.1 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|284166169|ref|YP_003404448.1| - 0.0055 16.6 0.2 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|284166169|ref|YP_003404448.1| - 0.0064 15.9 0.2 0.077 12.4 0.2 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|284166169|ref|YP_003404448.1| - 0.012 14.8 0.2 0.029 13.5 0.2 1.6 1 1 1 2 2 2 0 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284166169|ref|YP_003404448.1| - 0.014 15.3 0.1 0.024 14.5 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|284166169|ref|YP_003404448.1| - 0.037 13.2 0.1 0.082 12.0 0.1 1.4 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein THF_DHG_CYH_C PF02882.19 gi|284166169|ref|YP_003404448.1| - 0.092 12.1 0.1 0.45 9.8 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_2 PF03446.15 gi|284166169|ref|YP_003404448.1| - 0.098 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase HATPase_c PF02518.26 gi|284166170|ref|YP_003404449.1| - 9.8e-28 96.9 0.0 2.5e-27 95.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|284166170|ref|YP_003404449.1| - 9.5e-14 51.3 2.5 1.1e-13 51.0 0.5 2.1 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|284166170|ref|YP_003404449.1| - 3.9e-11 42.8 1.4 8.7e-11 41.7 0.2 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|284166170|ref|YP_003404449.1| - 4.5e-10 39.7 0.0 1.1e-09 38.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|284166170|ref|YP_003404449.1| - 1.2e-09 38.3 0.9 3.2e-09 37.0 0.0 2.2 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.7 gi|284166170|ref|YP_003404449.1| - 2e-06 28.0 0.0 4.6e-06 26.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|284166170|ref|YP_003404449.1| - 2e-06 27.8 0.0 6.1e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|284166170|ref|YP_003404449.1| - 1.9e-05 24.5 0.0 3.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 gi|284166170|ref|YP_003404449.1| - 5e-05 23.2 0.1 0.00025 21.0 0.1 2.3 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|284166170|ref|YP_003404449.1| - 0.00046 20.2 0.1 0.0013 18.7 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|284166170|ref|YP_003404449.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|284166170|ref|YP_003404449.1| - 0.012 15.8 0.2 0.23 11.8 0.0 3.0 3 1 0 3 3 3 0 PAS fold Bac_luciferase PF00296.20 gi|284166171|ref|YP_003404450.1| - 3.7e-79 266.4 4.3 4.9e-79 266.0 4.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase TPR_7 PF13176.6 gi|284166171|ref|YP_003404450.1| - 0.33 11.1 1.8 27 5.1 0.0 3.2 2 1 1 3 3 3 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|284166171|ref|YP_003404450.1| - 2.4 9.1 12.3 16 6.5 0.2 4.1 3 0 0 3 3 3 0 Tetratricopeptide repeat AIRS_C PF02769.22 gi|284166172|ref|YP_003404451.1| - 1.2e-22 80.7 2.6 1.2e-22 80.7 2.6 1.6 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|284166172|ref|YP_003404451.1| - 1.4e-15 57.7 0.6 3.7e-15 56.4 0.6 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Pro_Al_protease PF02983.14 gi|284166172|ref|YP_003404451.1| - 0.04 14.0 0.8 0.43 10.7 0.2 3.1 2 0 0 2 2 2 0 Alpha-lytic protease prodomain PAS_4 PF08448.10 gi|284166174|ref|YP_003404453.1| - 6.6e-27 93.9 1.7 3.3e-16 59.5 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|284166174|ref|YP_003404453.1| - 1e-26 93.6 0.0 2e-26 92.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|284166174|ref|YP_003404453.1| - 7.7e-15 55.0 0.0 4.6e-10 39.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|284166174|ref|YP_003404453.1| - 5e-14 51.9 0.1 3.6e-10 39.6 0.1 3.2 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|284166174|ref|YP_003404453.1| - 4.1e-13 49.3 0.0 7.6e-08 32.4 0.0 2.7 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|284166174|ref|YP_003404453.1| - 8.7e-11 41.7 0.1 8.7e-11 41.7 0.1 3.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|284166174|ref|YP_003404453.1| - 1.2e-10 42.1 0.1 3.9e-10 40.5 0.1 1.9 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|284166174|ref|YP_003404453.1| - 2.4e-10 40.9 0.1 8.9e-10 39.0 0.1 2.0 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|284166174|ref|YP_003404453.1| - 7.8e-09 36.0 0.0 1.7e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|284166174|ref|YP_003404453.1| - 0.002 18.4 2.1 0.34 11.2 0.1 3.7 4 0 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.6 gi|284166174|ref|YP_003404453.1| - 0.003 17.4 0.0 0.0081 16.0 0.0 1.8 1 1 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|284166174|ref|YP_003404453.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lar_N PF09861.9 gi|284166175|ref|YP_003404454.1| - 1.3e-39 135.5 0.0 1.9e-39 134.9 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF362 PF04015.12 gi|284166175|ref|YP_003404454.1| - 0.00011 22.6 0.0 0.00024 21.4 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF362) PAP2 PF01569.21 gi|284166176|ref|YP_003404455.1| - 2e-17 63.2 1.1 2e-17 63.2 1.1 2.5 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|284166176|ref|YP_003404455.1| - 3.7e-05 23.5 21.4 5.4e-05 23.0 14.7 3.0 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|284166176|ref|YP_003404455.1| - 0.067 13.7 1.4 0.33 11.5 0.1 2.4 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Bac_export_3 PF01313.19 gi|284166176|ref|YP_003404455.1| - 0.1 12.6 0.1 0.1 12.6 0.1 3.0 4 1 0 4 4 4 0 Bacterial export proteins, family 3 HTH_10 PF04967.12 gi|284166177|ref|YP_003404456.1| - 5.1e-18 64.6 0.1 9.4e-18 63.8 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284166177|ref|YP_003404456.1| - 2.7e-08 33.8 0.8 2.7e-08 33.8 0.8 1.7 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|284166177|ref|YP_003404456.1| - 6.6e-06 25.9 0.1 1.4e-05 24.9 0.1 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284166177|ref|YP_003404456.1| - 0.00043 19.9 0.1 0.00091 18.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|284166177|ref|YP_003404456.1| - 0.0024 17.4 0.0 0.0047 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284166177|ref|YP_003404456.1| - 0.0049 16.7 0.1 0.013 15.3 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0122 PF04297.14 gi|284166177|ref|YP_003404456.1| - 0.0062 16.8 0.0 0.0094 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 gi|284166177|ref|YP_003404456.1| - 0.0065 16.0 0.1 0.017 14.6 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|284166177|ref|YP_003404456.1| - 0.0087 16.1 0.0 0.038 14.1 0.0 2.0 2 1 1 3 3 3 1 Bacteriophage CI repressor helix-turn-helix domain HTH_11 PF08279.12 gi|284166177|ref|YP_003404456.1| - 0.012 15.6 0.1 0.04 13.9 0.0 1.8 1 1 1 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.12 gi|284166177|ref|YP_003404456.1| - 0.014 15.1 0.0 0.034 13.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|284166177|ref|YP_003404456.1| - 0.03 14.4 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|284166177|ref|YP_003404456.1| - 0.032 14.0 0.0 0.032 14.0 0.0 1.9 2 1 0 2 2 1 0 helix-turn-helix, Psq domain HTH_Tnp_ISL3 PF13542.6 gi|284166177|ref|YP_003404456.1| - 0.058 12.8 0.0 0.19 11.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r3 PF04539.16 gi|284166177|ref|YP_003404456.1| - 0.12 12.5 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HalOD1 PF18545.1 gi|284166178|ref|YP_003404457.1| - 8.1e-21 74.1 0.8 1.1e-20 73.7 0.8 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 AAA_12 PF13087.6 gi|284166179|ref|YP_003404458.1| - 4.6e-39 134.1 0.0 6.8e-39 133.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|284166179|ref|YP_003404458.1| - 1.3e-37 130.0 1.3 1.1e-17 64.7 0.2 2.8 3 1 1 4 4 3 2 AAA domain Dna2 PF08696.11 gi|284166179|ref|YP_003404458.1| - 5.8e-19 68.7 0.0 1.8e-17 63.8 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.6 gi|284166179|ref|YP_003404458.1| - 1.8e-17 63.7 1.5 4.6e-17 62.4 0.8 2.1 2 0 0 2 2 1 1 AAA domain PDDEXK_1 PF12705.7 gi|284166179|ref|YP_003404458.1| - 1.1e-14 55.0 0.4 3.6e-14 53.3 0.0 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|284166179|ref|YP_003404458.1| - 3.3e-12 47.0 0.1 1.9e-11 44.5 0.2 2.3 2 1 0 2 2 2 1 AAA domain Helicase_RecD PF05127.14 gi|284166179|ref|YP_003404458.1| - 1.3e-05 25.2 0.1 6.6e-05 22.8 0.1 2.2 2 0 0 2 2 2 1 Helicase Viral_helicase1 PF01443.18 gi|284166179|ref|YP_003404458.1| - 1.4e-05 24.9 0.0 0.07 12.8 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase Cas_Cas4 PF01930.17 gi|284166179|ref|YP_003404458.1| - 3.1e-05 24.1 0.1 0.00011 22.3 0.1 2.0 2 1 0 2 2 2 1 Domain of unknown function DUF83 UvrD-helicase PF00580.21 gi|284166179|ref|YP_003404458.1| - 4.3e-05 23.2 0.0 8.4e-05 22.2 0.0 1.5 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 gi|284166179|ref|YP_003404458.1| - 0.00046 20.5 0.0 0.002 18.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|284166179|ref|YP_003404458.1| - 0.00076 19.5 0.0 0.0017 18.4 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|284166179|ref|YP_003404458.1| - 0.0022 18.4 2.4 0.0022 18.4 2.4 2.6 2 1 0 2 2 2 1 AAA ATPase domain PhoH PF02562.16 gi|284166179|ref|YP_003404458.1| - 0.0056 16.1 0.0 0.057 12.9 0.0 2.3 1 1 0 1 1 1 1 PhoH-like protein AAA PF00004.29 gi|284166179|ref|YP_003404458.1| - 0.0083 16.6 0.5 0.06 13.8 0.2 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|284166179|ref|YP_003404458.1| - 0.013 15.0 0.0 0.033 13.7 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region DUF4350 PF14258.6 gi|284166179|ref|YP_003404458.1| - 0.026 14.9 2.5 41 4.7 0.0 5.0 5 0 0 5 5 4 0 Domain of unknown function (DUF4350) UvrD_C_2 PF13538.6 gi|284166179|ref|YP_003404458.1| - 0.032 14.0 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain SRP54 PF00448.22 gi|284166179|ref|YP_003404458.1| - 0.058 13.0 0.0 0.33 10.6 0.0 2.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|284166179|ref|YP_003404458.1| - 0.07 13.1 0.0 0.25 11.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|284166179|ref|YP_003404458.1| - 0.08 12.3 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|284166179|ref|YP_003404458.1| - 0.095 12.4 0.0 0.24 11.1 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|284166179|ref|YP_003404458.1| - 0.1 11.9 0.1 0.44 9.7 0.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SSE PF00437.20 gi|284166179|ref|YP_003404458.1| - 0.11 11.6 0.0 0.22 10.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|284166179|ref|YP_003404458.1| - 0.16 11.7 0.0 0.58 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|284166179|ref|YP_003404458.1| - 0.18 11.3 0.0 0.18 11.3 0.0 2.6 4 0 0 4 4 3 0 AAA domain PIF1 PF05970.14 gi|284166179|ref|YP_003404458.1| - 0.24 10.5 0.0 4.8 6.2 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase MEDS PF14417.6 gi|284166179|ref|YP_003404458.1| - 7.1 6.4 6.4 49 3.7 0.1 3.8 2 1 2 4 4 4 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain SPW PF03779.14 gi|284166180|ref|YP_003404459.1| - 4e-06 26.3 26.2 0.0055 16.3 9.1 2.5 2 1 0 2 2 2 2 SPW repeat ETRAMP PF09716.10 gi|284166180|ref|YP_003404459.1| - 0.1 12.7 0.2 2.3 8.3 0.0 2.6 2 1 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF4342 PF14242.6 gi|284166180|ref|YP_003404459.1| - 1.2 9.2 5.3 4.8 7.3 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) MHYT PF03707.16 gi|284166180|ref|YP_003404459.1| - 2.1 8.6 15.2 0.29 11.3 2.3 2.9 2 1 1 3 3 3 0 Bacterial signalling protein N terminal repeat Phage_holin_5_2 PF16079.5 gi|284166180|ref|YP_003404459.1| - 2.1 8.7 9.4 0.24 11.8 1.7 2.2 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V PGPGW PF09656.10 gi|284166181|ref|YP_003404460.1| - 0.0014 18.1 0.0 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 Putative transmembrane protein (PGPGW) Sugarporin_N PF11471.8 gi|284166181|ref|YP_003404460.1| - 0.016 15.1 1.0 0.031 14.2 0.1 1.8 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension YjbE PF11106.8 gi|284166181|ref|YP_003404460.1| - 0.18 12.1 2.2 0.21 11.8 2.2 1.1 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE HHH_2 PF12826.7 gi|284166182|ref|YP_003404461.1| - 0.0044 17.1 0.9 0.12 12.5 0.5 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif COG2 PF06148.11 gi|284166182|ref|YP_003404461.1| - 0.054 13.6 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3225 PF11533.8 gi|284166183|ref|YP_003404462.1| - 2.1e-06 27.4 0.5 5.2e-06 26.2 0.2 1.8 1 1 0 2 2 2 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 gi|284166183|ref|YP_003404462.1| - 4.9e-05 23.6 2.0 7.1e-05 23.0 1.5 1.5 2 0 0 2 2 2 1 SnoaL-like domain NTF2 PF02136.20 gi|284166183|ref|YP_003404462.1| - 0.026 15.1 0.0 0.032 14.8 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain Zincin_2 PF10103.9 gi|284166185|ref|YP_003404464.1| - 1.3e-63 215.4 4.6 1.4e-33 116.6 0.4 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase PGF-CTERM PF18204.1 gi|284166186|ref|YP_003404465.1| - 0.63 10.1 6.7 0.91 9.6 6.7 1.3 1 0 0 1 1 1 0 PGF-CTERM motif LSM PF01423.22 gi|284166187|ref|YP_003404466.1| - 6.3e-19 67.4 0.0 7e-19 67.3 0.0 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|284166187|ref|YP_003404466.1| - 7.4e-07 29.2 0.0 9.2e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|284166187|ref|YP_003404466.1| - 0.1 12.7 0.0 0.14 12.3 0.0 1.3 1 1 0 1 1 1 0 RimP C-terminal SH3 domain Ribosomal_L37e PF01907.19 gi|284166188|ref|YP_003404467.1| - 4e-22 78.1 13.9 4.4e-22 78.0 13.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RanBP PF00641.18 gi|284166188|ref|YP_003404467.1| - 0.029 13.7 2.9 0.45 9.9 0.2 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others OrfB_Zn_ribbon PF07282.11 gi|284166188|ref|YP_003404467.1| - 0.03 14.2 4.4 0.039 13.9 4.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|284166188|ref|YP_003404467.1| - 0.043 13.2 2.8 3 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|284166188|ref|YP_003404467.1| - 0.11 12.5 2.5 0.13 12.3 2.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|284166188|ref|YP_003404467.1| - 0.18 11.6 6.9 0.52 10.1 0.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF983 PF06170.12 gi|284166188|ref|YP_003404467.1| - 6.7 7.2 5.0 14 6.1 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) DUF4013 PF13197.6 gi|284166189|ref|YP_003404468.1| - 3e-33 115.0 11.4 3e-33 115.0 11.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) EI24 PF07264.11 gi|284166189|ref|YP_003404468.1| - 0.11 12.8 19.6 2.1 8.6 19.6 2.4 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) PALP PF00291.25 gi|284166190|ref|YP_003404469.1| - 6.9e-58 196.4 1.4 8e-58 196.2 1.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|284166190|ref|YP_003404469.1| - 0.13 12.3 0.1 0.4 10.7 0.3 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF502 PF04367.13 gi|284166191|ref|YP_003404470.1| - 7.1e-19 67.7 0.2 1.5e-18 66.7 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF502) Pro_dh PF01619.18 gi|284166192|ref|YP_003404471.1| - 1.4e-23 83.9 0.0 2.4e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Proline dehydrogenase RE_XamI PF09572.10 gi|284166192|ref|YP_003404471.1| - 0.097 12.3 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 XamI restriction endonuclease Aminotran_3 PF00202.21 gi|284166193|ref|YP_003404472.1| - 4.1e-101 338.6 0.0 4.9e-101 338.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Ribonuc_L-PSP PF01042.21 gi|284166194|ref|YP_003404473.1| - 4.5e-35 120.3 0.0 4.9e-35 120.2 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP GGDEF PF00990.21 gi|284166194|ref|YP_003404473.1| - 0.018 14.8 0.0 0.041 13.6 0.0 1.5 1 1 1 2 2 2 0 Diguanylate cyclase, GGDEF domain Peptidase_M20 PF01546.28 gi|284166195|ref|YP_003404474.1| - 1.4e-23 83.7 5.2 2.2e-23 83.1 5.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284166195|ref|YP_003404474.1| - 1.6e-11 44.1 0.4 5.7e-11 42.3 0.4 1.9 2 0 0 2 2 2 1 Peptidase dimerisation domain Sdh5 PF03937.16 gi|284166196|ref|YP_003404475.1| - 0.035 14.1 0.1 0.082 12.9 0.1 1.6 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase Phage_int_SAM_4 PF13495.6 gi|284166196|ref|YP_003404475.1| - 0.035 14.6 0.1 0.86 10.1 0.0 2.8 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain BCCT PF02028.17 gi|284166197|ref|YP_003404476.1| - 2.8e-153 510.9 51.9 3.2e-153 510.7 51.9 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Aminotran_3 PF00202.21 gi|284166198|ref|YP_003404477.1| - 2e-77 260.6 0.0 4.1e-77 259.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-III HATPase_c PF02518.26 gi|284166199|ref|YP_003404478.1| - 3.2e-29 101.7 0.0 7.8e-29 100.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|284166199|ref|YP_003404478.1| - 3.8e-15 56.1 4.8 1.3e-11 44.7 0.2 3.0 3 0 0 3 3 3 2 PAS fold GAF PF01590.26 gi|284166199|ref|YP_003404478.1| - 4.2e-12 46.8 0.1 2.1e-11 44.6 0.1 2.1 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|284166199|ref|YP_003404478.1| - 1.6e-11 44.4 0.1 2.8e-07 30.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|284166199|ref|YP_003404478.1| - 4.1e-11 43.0 0.0 2.9e-08 33.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|284166199|ref|YP_003404478.1| - 6.2e-11 42.2 3.3 9.2e-10 38.4 0.1 3.6 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|284166199|ref|YP_003404478.1| - 1.7e-08 34.3 0.0 3.1e-07 30.3 0.0 3.2 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|284166199|ref|YP_003404478.1| - 1.4e-07 31.9 0.0 2.9e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|284166199|ref|YP_003404478.1| - 3e-06 27.6 0.0 1.1e-05 25.8 0.0 2.1 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|284166199|ref|YP_003404478.1| - 8.8e-06 25.6 0.0 0.00018 21.3 0.0 2.4 2 0 0 2 2 2 1 GHKL domain Holin_BhlA PF10960.8 gi|284166199|ref|YP_003404478.1| - 0.0031 17.4 1.7 0.0072 16.3 0.1 2.4 2 0 0 2 2 2 1 BhlA holin family PAS PF00989.25 gi|284166199|ref|YP_003404478.1| - 0.021 14.8 0.0 0.086 12.8 0.0 2.1 2 0 0 2 2 2 0 PAS fold DUF1543 PF07566.12 gi|284166199|ref|YP_003404478.1| - 0.077 12.7 0.0 11 5.9 0.0 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1543) HATPase_c_3 PF13589.6 gi|284166199|ref|YP_003404478.1| - 0.15 11.8 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PALP PF00291.25 gi|284166200|ref|YP_003404479.1| - 2e-74 250.7 9.3 2.5e-74 250.4 9.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACC_epsilon PF13822.6 gi|284166200|ref|YP_003404479.1| - 0.33 11.7 5.4 0.87 10.3 5.4 1.7 1 0 0 1 1 1 0 Acyl-CoA carboxylase epsilon subunit Peptidase_M20 PF01546.28 gi|284166201|ref|YP_003404480.1| - 1.2e-21 77.4 3.9 2e-21 76.7 3.9 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284166201|ref|YP_003404480.1| - 2e-11 43.7 0.6 4.9e-11 42.5 0.6 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain 2-Hacid_dh_C PF02826.19 gi|284166202|ref|YP_003404481.1| - 1.1e-54 184.5 0.0 1.7e-54 183.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|284166202|ref|YP_003404481.1| - 4.2e-14 52.4 0.0 5.2e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|284166202|ref|YP_003404481.1| - 0.0014 19.2 0.0 0.0075 16.8 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284166202|ref|YP_003404481.1| - 0.0095 16.1 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|284166202|ref|YP_003404481.1| - 0.0099 15.5 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|284166202|ref|YP_003404481.1| - 0.031 14.7 0.0 0.062 13.7 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|284166202|ref|YP_003404481.1| - 0.047 13.7 0.1 0.99 9.4 0.0 2.7 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|284166202|ref|YP_003404481.1| - 0.069 13.4 0.8 2.1 8.7 0.1 3.0 3 1 0 3 3 3 0 TrkA-N domain FAD-oxidase_C PF02913.19 gi|284166203|ref|YP_003404482.1| - 1.3e-61 208.4 0.1 3.2e-61 207.1 0.1 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|284166203|ref|YP_003404482.1| - 6.3e-41 139.4 2.2 1.6e-40 138.1 2.2 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|284166203|ref|YP_003404482.1| - 3.6e-10 40.2 5.0 6.8e-10 39.3 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284166203|ref|YP_003404482.1| - 1.8e-09 37.9 5.3 4e-09 36.8 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|284166203|ref|YP_003404482.1| - 6e-08 32.8 0.0 2.7e-05 24.3 0.1 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|284166203|ref|YP_003404482.1| - 0.00039 20.5 3.0 0.053 13.6 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284166203|ref|YP_003404482.1| - 0.0045 17.1 3.4 0.073 13.2 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|284166203|ref|YP_003404482.1| - 0.018 14.5 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.6 gi|284166203|ref|YP_003404482.1| - 0.022 14.9 3.2 0.12 12.6 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain DnaG_DnaB_bind PF08278.11 gi|284166203|ref|YP_003404482.1| - 0.052 14.1 1.8 6.2 7.4 0.5 3.5 3 0 0 3 3 3 0 DNA primase DnaG DnaB-binding Fer4_7 PF12838.7 gi|284166203|ref|YP_003404482.1| - 0.39 11.4 7.5 3.2 8.4 8.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284166203|ref|YP_003404482.1| - 0.49 10.3 14.0 0.31 10.9 4.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|284166203|ref|YP_003404482.1| - 2.2 9.0 11.0 0.47 11.1 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284166203|ref|YP_003404482.1| - 6.7 7.0 12.4 0.78 9.9 3.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain ELFV_dehydrog PF00208.21 gi|284166205|ref|YP_003404484.1| - 4.2e-69 233.0 0.1 5.5e-69 232.6 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|284166205|ref|YP_003404484.1| - 9.5e-56 187.2 0.0 1.7e-55 186.4 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|284166205|ref|YP_003404484.1| - 0.00045 19.6 0.0 0.00079 18.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|284166205|ref|YP_003404484.1| - 0.055 11.0 0.1 0.083 10.4 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.12 gi|284166205|ref|YP_003404484.1| - 0.083 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Peptidase_M24 PF00557.24 gi|284166206|ref|YP_003404485.1| - 2e-37 128.9 0.0 2.9e-37 128.4 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|284166206|ref|YP_003404485.1| - 6.1e-23 81.9 0.0 1.2e-22 81.0 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CarS-like PF01864.17 gi|284166207|ref|YP_003404486.1| - 8.4e-46 156.1 1.0 9.9e-46 155.9 1.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|284166207|ref|YP_003404486.1| - 1.9e-06 27.8 0.5 1.9e-06 27.8 0.5 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|284166207|ref|YP_003404486.1| - 4.2 7.2 12.2 1.4 8.7 0.4 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper NTP_transferase PF00483.23 gi|284166208|ref|YP_003404487.1| - 5.4e-43 147.4 0.0 6e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|284166208|ref|YP_003404487.1| - 4.2e-14 53.2 0.0 4.9e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|284166208|ref|YP_003404487.1| - 4.5e-06 26.6 0.0 3.1e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|284166208|ref|YP_003404487.1| - 0.091 12.6 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt_C PF14667.6 gi|284166209|ref|YP_003404488.1| - 8.4e-19 68.1 17.6 8.4e-19 68.1 17.6 4.0 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|284166209|ref|YP_003404488.1| - 3.4e-15 56.2 17.7 3.4e-15 56.2 17.7 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|284166209|ref|YP_003404488.1| - 7.3e-14 51.7 3.9 7.3e-14 51.7 3.9 2.6 2 2 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|284166209|ref|YP_003404488.1| - 1.1e-09 37.5 21.3 1.9e-09 36.6 21.3 1.5 1 0 0 1 1 1 1 Lipid II flippase MurJ Sulfatase PF00884.23 gi|284166210|ref|YP_003404489.1| - 0.0098 15.3 0.1 0.015 14.7 0.1 1.3 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.12 gi|284166210|ref|YP_003404489.1| - 0.076 13.1 0.2 0.18 11.9 0.1 1.6 2 0 0 2 2 2 0 PglZ domain DUF563 PF04577.14 gi|284166211|ref|YP_003404490.1| - 1.5e-42 146.1 0.0 2e-42 145.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF563) Metalloenzyme PF01676.18 gi|284166212|ref|YP_003404491.1| - 0.00033 20.1 0.0 0.0005 19.5 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.12 gi|284166212|ref|YP_003404491.1| - 0.16 12.0 0.1 0.37 10.9 0.1 1.5 1 0 0 1 1 1 0 PglZ domain Methyltransf_21 PF05050.12 gi|284166215|ref|YP_003404494.1| - 4.4e-20 72.4 0.0 6.1e-20 71.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|284166215|ref|YP_003404494.1| - 9.5e-07 28.4 0.0 2.7e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|284166215|ref|YP_003404494.1| - 1.2e-05 25.1 0.1 6.1e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Met-10+ like-protein PrmA PF06325.13 gi|284166215|ref|YP_003404494.1| - 0.12 11.8 0.1 0.17 11.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.20 gi|284166216|ref|YP_003404495.1| - 1.9e-34 118.7 0.0 2.8e-34 118.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166216|ref|YP_003404495.1| - 1.4e-31 109.7 0.0 2.8e-31 108.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284166216|ref|YP_003404495.1| - 5e-11 42.9 1.2 2.4e-10 40.7 0.1 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284166216|ref|YP_003404495.1| - 2.6e-10 41.0 2.5 2.6e-10 41.0 2.5 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|284166216|ref|YP_003404495.1| - 3.9e-05 24.0 0.0 0.00011 22.6 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|284166217|ref|YP_003404496.1| - 1.5e-23 83.2 0.0 2.4e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166217|ref|YP_003404496.1| - 1.3e-15 58.0 0.0 2.2e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284166217|ref|YP_003404496.1| - 2.6e-09 37.3 0.4 4.4e-09 36.6 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|284166218|ref|YP_003404497.1| - 2e-23 83.1 0.1 2.9e-23 82.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284166218|ref|YP_003404497.1| - 7.1e-12 45.7 0.8 1.3e-11 44.9 0.8 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|284166218|ref|YP_003404497.1| - 9.7e-11 41.6 0.6 2.8e-06 27.0 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|284166218|ref|YP_003404497.1| - 0.021 14.8 0.5 0.038 13.9 0.2 1.7 2 0 0 2 2 2 0 Glycosyl transferase family group 2 AglB_L1 PF18079.1 gi|284166219|ref|YP_003404498.1| - 2.4e-25 88.6 7.7 5.5e-25 87.5 7.7 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|284166219|ref|YP_003404498.1| - 1.5e-17 63.7 27.5 4.5e-16 58.8 27.5 3.0 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit ECF_trnsprt PF12822.7 gi|284166219|ref|YP_003404498.1| - 0.012 15.7 0.5 0.012 15.7 0.5 3.2 2 1 1 3 3 3 0 ECF transporter, substrate-specific component DUF2206 PF09971.9 gi|284166219|ref|YP_003404498.1| - 0.071 11.9 2.1 0.58 8.9 0.0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2206) DUF368 PF04018.13 gi|284166220|ref|YP_003404499.1| - 9.9e-67 225.1 13.4 1.2e-66 224.8 13.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) AAA_16 PF13191.6 gi|284166221|ref|YP_003404500.1| - 5.1e-09 36.7 3.8 2.8e-08 34.3 3.8 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284166221|ref|YP_003404500.1| - 0.0011 19.2 0.0 0.0023 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|284166221|ref|YP_003404500.1| - 0.0012 18.6 0.0 0.0037 17.0 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284166221|ref|YP_003404500.1| - 0.027 14.4 0.6 0.08 12.8 0.6 1.9 1 0 0 1 1 1 0 MarR family Guanylate_kin PF00625.21 gi|284166221|ref|YP_003404500.1| - 0.042 13.5 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Guanylate kinase MarR PF01047.22 gi|284166221|ref|YP_003404500.1| - 0.049 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|284166221|ref|YP_003404500.1| - 0.073 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|284166221|ref|YP_003404500.1| - 0.079 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA_30 PF13604.6 gi|284166221|ref|YP_003404500.1| - 0.098 12.4 1.5 0.78 9.4 1.5 2.4 2 1 0 2 2 2 0 AAA domain TrmB PF01978.19 gi|284166221|ref|YP_003404500.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CCG PF02754.16 gi|284166222|ref|YP_003404501.1| - 4.2e-23 81.4 2.7 3.6e-12 46.3 0.0 2.8 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|284166222|ref|YP_003404501.1| - 5.6e-09 36.3 8.3 5.6e-09 36.3 8.3 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284166222|ref|YP_003404501.1| - 1.3e-06 28.8 6.7 1.3e-06 28.8 6.7 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284166222|ref|YP_003404501.1| - 0.003 18.1 13.7 0.003 18.1 13.7 2.8 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284166222|ref|YP_003404501.1| - 0.0088 16.1 22.9 0.016 15.4 13.2 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284166222|ref|YP_003404501.1| - 0.0089 16.2 17.1 0.012 15.7 13.2 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain zf-CSL PF05207.13 gi|284166222|ref|YP_003404501.1| - 0.013 15.2 9.4 0.12 12.1 0.1 4.4 5 0 0 5 5 5 0 CSL zinc finger DDE_Tnp_ISAZ013 PF07592.11 gi|284166222|ref|YP_003404501.1| - 0.029 13.4 0.0 0.049 12.6 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF3390 PF11870.8 gi|284166222|ref|YP_003404501.1| - 0.062 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_18 PF13746.6 gi|284166222|ref|YP_003404501.1| - 0.19 12.0 5.7 6.7 6.9 0.2 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284166222|ref|YP_003404501.1| - 0.68 9.8 13.8 0.25 11.2 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284166222|ref|YP_003404501.1| - 1.9 9.5 17.9 3.1 8.8 13.2 3.3 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain ETF_QO PF05187.13 gi|284166222|ref|YP_003404501.1| - 2.8 8.1 6.3 0.43 10.7 0.5 2.4 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_21 PF14697.6 gi|284166222|ref|YP_003404501.1| - 2.9 8.1 14.8 0.48 10.6 0.7 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|284166223|ref|YP_003404502.1| - 5.7e-38 131.1 4.4 7e-38 130.8 4.4 1.1 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|284166223|ref|YP_003404502.1| - 2.9e-05 23.3 1.7 5.8e-05 22.4 1.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|284166223|ref|YP_003404502.1| - 3.7e-05 23.1 0.5 0.0021 17.3 0.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284166223|ref|YP_003404502.1| - 0.00023 20.6 5.3 0.00023 20.6 3.5 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|284166223|ref|YP_003404502.1| - 0.00033 20.3 10.0 0.0029 17.2 10.0 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284166223|ref|YP_003404502.1| - 0.0023 17.2 1.0 0.033 13.4 0.4 2.6 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|284166223|ref|YP_003404502.1| - 0.0051 15.6 0.2 0.031 13.0 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|284166223|ref|YP_003404502.1| - 0.033 13.5 0.6 0.056 12.7 0.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|284166223|ref|YP_003404502.1| - 0.043 14.4 0.1 0.46 11.1 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284166223|ref|YP_003404502.1| - 0.044 14.0 2.5 0.12 12.7 2.5 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|284166223|ref|YP_003404502.1| - 0.054 12.5 0.3 0.14 11.2 0.3 1.7 1 0 0 1 1 1 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|284166223|ref|YP_003404502.1| - 0.097 11.5 0.2 0.16 10.8 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase DAO PF01266.24 gi|284166224|ref|YP_003404503.1| - 1.2e-53 183.0 2.5 1.7e-53 182.5 2.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|284166224|ref|YP_003404503.1| - 1.1e-09 38.5 5.4 5.8e-09 36.2 5.4 2.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|284166224|ref|YP_003404503.1| - 1.2e-07 31.3 0.3 8.4e-07 28.5 0.3 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284166224|ref|YP_003404503.1| - 2.6e-06 26.8 3.1 5.6e-06 25.7 3.1 1.5 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|284166224|ref|YP_003404503.1| - 1.1e-05 24.9 7.7 0.00019 20.8 7.7 2.2 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|284166224|ref|YP_003404503.1| - 0.0013 19.3 2.5 0.0027 18.2 0.4 2.5 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284166224|ref|YP_003404503.1| - 0.0084 16.3 0.4 0.031 14.5 0.3 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO_C PF16901.5 gi|284166224|ref|YP_003404503.1| - 0.016 15.0 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase ApbA PF02558.16 gi|284166224|ref|YP_003404503.1| - 0.022 14.4 0.2 0.043 13.5 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284166224|ref|YP_003404503.1| - 0.027 14.4 0.1 0.045 13.6 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|284166224|ref|YP_003404503.1| - 0.028 13.7 0.6 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284166224|ref|YP_003404503.1| - 0.028 13.8 6.9 0.32 10.3 7.0 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase YbjQ_1 PF01906.17 gi|284166224|ref|YP_003404503.1| - 0.038 14.6 0.0 0.11 13.2 0.0 1.7 1 0 0 1 1 1 0 Putative heavy-metal-binding Lycopene_cycl PF05834.12 gi|284166224|ref|YP_003404503.1| - 0.1 11.6 1.2 0.26 10.3 0.2 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|284166224|ref|YP_003404503.1| - 0.11 11.7 1.6 0.29 10.3 0.1 2.0 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.14 gi|284166224|ref|YP_003404503.1| - 0.24 10.0 0.4 0.85 8.2 0.1 2.0 2 0 0 2 2 2 0 HI0933-like protein FGGY_N PF00370.21 gi|284166225|ref|YP_003404504.1| - 8.3e-78 261.3 0.0 1.2e-77 260.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|284166225|ref|YP_003404504.1| - 1.7e-58 197.6 0.5 3.5e-58 196.6 0.5 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|284166225|ref|YP_003404504.1| - 0.00011 21.8 0.1 0.0017 17.9 0.0 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family RTX PF02382.15 gi|284166226|ref|YP_003404505.1| - 0.028 14.1 2.3 0.06 13.0 2.3 1.5 1 0 0 1 1 1 0 N-terminal domain in RTX protein Bacillus_PapR PF05968.11 gi|284166226|ref|YP_003404505.1| - 9.8 6.1 7.7 3.3 7.7 0.1 2.8 2 0 0 2 2 2 0 Bacillus PapR protein DUF1326 PF07040.11 gi|284166227|ref|YP_003404506.1| - 2.4e-50 171.0 0.5 2.7e-50 170.8 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1326) DUF2182 PF09948.9 gi|284166228|ref|YP_003404507.1| - 5.3e-57 192.7 19.2 5.3e-57 192.7 19.2 1.4 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) DUF3169 PF11368.8 gi|284166229|ref|YP_003404508.1| - 0.062 12.8 0.0 0.069 12.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF4733 PF15878.5 gi|284166229|ref|YP_003404508.1| - 0.072 13.6 0.1 5.9 7.4 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4733) YrhC PF14143.6 gi|284166229|ref|YP_003404508.1| - 0.28 11.3 1.8 0.4 10.8 1.8 1.3 1 0 0 1 1 1 0 YrhC-like protein Hydrolase_3 PF08282.12 gi|284166230|ref|YP_003404509.1| - 9.5e-26 91.1 0.0 4.7e-18 65.8 0.3 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|284166230|ref|YP_003404509.1| - 2.7e-07 30.4 0.0 7.2e-06 25.7 0.1 2.2 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|284166230|ref|YP_003404509.1| - 3.2e-07 30.9 2.0 2.7e-06 27.8 0.6 2.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284166230|ref|YP_003404509.1| - 4e-05 24.1 3.6 0.022 15.2 0.1 3.3 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284166230|ref|YP_003404509.1| - 0.28 11.3 0.0 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase LAL_C2 PF18603.1 gi|284166230|ref|YP_003404509.1| - 1 9.6 5.5 0.15 12.2 0.9 2.0 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 DUF4131 PF13567.6 gi|284166231|ref|YP_003404510.1| - 0.059 13.0 0.1 0.064 12.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2834 PF11196.8 gi|284166231|ref|YP_003404510.1| - 0.094 13.1 0.7 0.14 12.5 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2834) Potass_KdpF PF09604.10 gi|284166231|ref|YP_003404510.1| - 2 8.5 10.6 2 8.5 2.7 2.4 2 0 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) Radical_SAM PF04055.21 gi|284166232|ref|YP_003404511.1| - 3.4e-21 76.3 1.2 1.5e-20 74.2 1.2 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|284166232|ref|YP_003404511.1| - 4.1e-19 68.7 0.2 1.8e-18 66.6 0.1 2.1 2 0 0 2 2 2 1 Wyosine base formation Hydrolase PF00702.26 gi|284166232|ref|YP_003404511.1| - 0.13 12.6 0.0 0.68 10.2 0.0 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase GCS2 PF04107.13 gi|284166233|ref|YP_003404512.1| - 1e-13 51.3 0.3 1.4e-13 50.8 0.3 1.2 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Polysacc_synt_3 PF13440.6 gi|284166234|ref|YP_003404513.1| - 2.2e-17 63.2 3.1 2.2e-17 63.2 3.1 2.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|284166234|ref|YP_003404513.1| - 1.8e-15 57.3 36.7 1.9e-15 57.2 12.3 3.9 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|284166234|ref|YP_003404513.1| - 1.5e-14 54.1 8.4 1.5e-14 54.1 8.4 2.5 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Sulfatase PF00884.23 gi|284166235|ref|YP_003404514.1| - 8.7e-28 97.6 0.1 1.7e-27 96.6 0.1 1.5 1 1 0 1 1 1 1 Sulfatase PS_pyruv_trans PF04230.13 gi|284166236|ref|YP_003404515.1| - 2.2e-05 24.6 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 2 2 Polysaccharide pyruvyl transferase ACT_7 PF13840.6 gi|284166237|ref|YP_003404516.1| - 5.6e-19 67.7 0.6 1.6e-18 66.3 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|284166237|ref|YP_003404516.1| - 0.00062 19.5 1.6 0.0026 17.5 0.1 2.5 2 2 0 2 2 2 1 ACT domain YejG PF13989.6 gi|284166237|ref|YP_003404516.1| - 0.076 13.4 0.1 0.12 12.9 0.0 1.4 1 1 0 1 1 1 0 YejG-like protein Phosphodiest PF01663.22 gi|284166238|ref|YP_003404517.1| - 1.2e-13 51.4 1.4 1.1e-12 48.3 1.2 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|284166238|ref|YP_003404517.1| - 0.00013 21.4 0.0 0.0002 20.8 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.12 gi|284166238|ref|YP_003404517.1| - 0.03 14.4 0.0 0.089 12.9 0.0 1.7 2 0 0 2 2 2 0 PglZ domain Sulfatase PF00884.23 gi|284166239|ref|YP_003404518.1| - 2.2e-09 37.2 0.0 3.8e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|284166239|ref|YP_003404518.1| - 0.1 12.1 2.1 0.33 10.5 0.0 2.4 2 1 0 3 3 3 0 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|284166240|ref|YP_003404519.1| - 2e-18 66.9 0.0 5.5e-18 65.4 0.0 1.7 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|284166240|ref|YP_003404519.1| - 7.6e-05 22.5 0.7 0.16 11.5 0.5 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|284166240|ref|YP_003404519.1| - 0.0043 16.5 0.0 0.0063 15.9 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Glycos_transf_1 PF00534.20 gi|284166241|ref|YP_003404520.1| - 2.6e-12 46.6 0.0 4e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166241|ref|YP_003404520.1| - 3.5e-11 43.7 0.0 5.5e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|284166242|ref|YP_003404521.1| - 2.6e-22 79.1 0.0 5.3e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166242|ref|YP_003404521.1| - 2.2e-16 60.5 0.0 4.4e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284166242|ref|YP_003404521.1| - 8.2e-06 25.9 0.0 1.9e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Osmo_CC PF08946.10 gi|284166242|ref|YP_003404521.1| - 0.097 12.9 0.3 0.32 11.3 0.1 2.0 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Glyco_tranf_2_3 PF13641.6 gi|284166243|ref|YP_003404522.1| - 1.8e-22 80.4 0.1 3e-22 79.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|284166243|ref|YP_003404522.1| - 3e-20 72.7 0.6 4.6e-20 72.1 0.3 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|284166243|ref|YP_003404522.1| - 9.1e-15 55.1 0.0 1.3e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|284166243|ref|YP_003404522.1| - 7.1e-10 38.6 0.0 1.2e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|284166243|ref|YP_003404522.1| - 0.1 11.2 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Chitin synthase Glyco_tranf_2_2 PF10111.9 gi|284166243|ref|YP_003404522.1| - 0.23 10.9 0.0 0.34 10.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 CTP-dep_RFKase PF01982.16 gi|284166244|ref|YP_003404523.1| - 1.5e-47 160.6 0.0 2.2e-47 160.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|284166244|ref|YP_003404523.1| - 1.5e-07 31.3 1.0 2.8e-07 30.5 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284166244|ref|YP_003404523.1| - 1.7e-06 27.8 0.3 3.5e-06 26.8 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284166244|ref|YP_003404523.1| - 2e-05 24.1 0.1 3.3e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|284166244|ref|YP_003404523.1| - 3.3e-05 23.8 0.1 7.4e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284166244|ref|YP_003404523.1| - 0.00013 21.8 0.1 0.00028 20.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|284166244|ref|YP_003404523.1| - 0.00093 19.1 0.1 0.0017 18.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|284166244|ref|YP_003404523.1| - 0.00097 18.9 0.2 0.00097 18.9 0.2 1.6 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284166244|ref|YP_003404523.1| - 0.0024 18.0 0.0 0.0061 16.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|284166244|ref|YP_003404523.1| - 0.012 15.3 0.2 0.021 14.5 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|284166244|ref|YP_003404523.1| - 0.017 15.6 0.1 0.029 14.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|284166244|ref|YP_003404523.1| - 0.02 14.7 0.8 0.032 14.0 0.8 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|284166244|ref|YP_003404523.1| - 0.031 14.0 0.0 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF3363 PF11843.8 gi|284166244|ref|YP_003404523.1| - 0.034 13.1 0.0 0.052 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3363) HTH_34 PF13601.6 gi|284166244|ref|YP_003404523.1| - 0.038 14.2 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Dimerisation PF08100.11 gi|284166244|ref|YP_003404523.1| - 0.055 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain DUF4423 PF14394.6 gi|284166244|ref|YP_003404523.1| - 0.063 13.0 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|284166244|ref|YP_003404523.1| - 0.068 13.1 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|284166244|ref|YP_003404523.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DHBP_synthase PF00926.19 gi|284166245|ref|YP_003404524.1| - 3.3e-58 196.4 0.2 3.8e-58 196.2 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase ABC2_membrane_2 PF12679.7 gi|284166246|ref|YP_003404525.1| - 3.4e-16 59.4 12.4 6.1e-16 58.5 12.4 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284166246|ref|YP_003404525.1| - 1.5e-06 28.0 3.5 1.5e-06 28.0 3.5 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284166246|ref|YP_003404525.1| - 1.4e-05 24.4 6.2 2e-05 23.9 6.2 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284166246|ref|YP_003404525.1| - 0.0022 17.9 4.3 0.0022 17.9 4.3 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|284166247|ref|YP_003404526.1| - 1.7e-22 80.4 0.0 2.4e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166247|ref|YP_003404526.1| - 1.2e-16 61.4 1.1 5.2e-12 46.2 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RES PF08808.11 gi|284166247|ref|YP_003404526.1| - 0.039 13.8 0.4 0.7 9.8 0.1 2.3 2 0 0 2 2 2 0 RES domain AAA_29 PF13555.6 gi|284166247|ref|YP_003404526.1| - 0.1 12.3 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|284166247|ref|YP_003404526.1| - 0.12 12.8 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284166247|ref|YP_003404526.1| - 0.13 12.6 0.2 0.5 10.6 0.2 2.2 1 1 0 1 1 1 0 AAA domain PRC PF05239.16 gi|284166248|ref|YP_003404527.1| - 1.8e-10 40.7 0.1 2e-10 40.6 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Methyltransf_25 PF13649.6 gi|284166249|ref|YP_003404528.1| - 1.7e-16 60.7 0.3 5.1e-16 59.2 0.1 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284166249|ref|YP_003404528.1| - 2e-16 60.4 0.1 5.3e-16 59.1 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166249|ref|YP_003404528.1| - 5.9e-16 58.6 0.0 8.7e-16 58.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166249|ref|YP_003404528.1| - 3.7e-12 46.4 0.0 6.5e-12 45.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284166249|ref|YP_003404528.1| - 3.5e-10 40.5 0.0 6.9e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284166249|ref|YP_003404528.1| - 1.1e-08 34.7 0.0 1.8e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|284166249|ref|YP_003404528.1| - 1e-06 28.5 0.0 1.8e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|284166249|ref|YP_003404528.1| - 1.5e-05 24.9 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|284166249|ref|YP_003404528.1| - 3.6e-05 23.4 0.0 6.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|284166249|ref|YP_003404528.1| - 0.00082 19.4 0.0 0.0015 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|284166249|ref|YP_003404528.1| - 0.014 15.5 0.0 0.02 15.0 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|284166249|ref|YP_003404528.1| - 0.028 13.5 0.0 0.084 11.9 0.0 1.6 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|284166249|ref|YP_003404528.1| - 0.031 13.6 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 gi|284166249|ref|YP_003404528.1| - 0.11 11.0 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.13 gi|284166249|ref|YP_003404528.1| - 0.22 10.9 0.1 0.31 10.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AP_endonuc_2 PF01261.24 gi|284166250|ref|YP_003404529.1| - 3.1e-27 95.4 1.0 8.4e-27 94.0 0.4 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel CstA PF02554.14 gi|284166251|ref|YP_003404530.1| - 1.1e-104 350.3 21.8 1.1e-104 350.3 21.8 2.4 2 1 1 3 3 3 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|284166251|ref|YP_003404530.1| - 4.9e-31 107.5 5.5 4.9e-31 107.5 5.5 3.4 3 0 0 3 3 3 1 5TM C-terminal transporter carbon starvation CstA DUF496 PF04363.12 gi|284166252|ref|YP_003404531.1| - 0.074 13.1 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF496) CopD PF05425.13 gi|284166255|ref|YP_003404534.1| - 0.024 15.0 6.7 0.032 14.6 6.7 1.1 1 0 0 1 1 1 0 Copper resistance protein D DZR PF12773.7 gi|284166256|ref|YP_003404535.1| - 0.00034 20.6 0.7 0.00045 20.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284166256|ref|YP_003404535.1| - 0.0012 18.9 0.9 0.0021 18.1 0.9 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|284166256|ref|YP_003404535.1| - 0.0017 18.6 0.8 0.0026 18.0 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon TerY_C PF15616.6 gi|284166256|ref|YP_003404535.1| - 0.0029 17.7 1.2 0.0035 17.5 1.2 1.2 1 0 0 1 1 1 1 TerY-C metal binding domain zinc-ribbons_6 PF07191.12 gi|284166256|ref|YP_003404535.1| - 0.0039 17.2 0.8 0.005 16.8 0.8 1.2 1 0 0 1 1 1 1 zinc-ribbons HypA PF01155.19 gi|284166256|ref|YP_003404535.1| - 0.0049 16.9 0.8 0.0062 16.5 0.8 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|284166256|ref|YP_003404535.1| - 0.017 14.5 2.3 0.37 10.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|284166256|ref|YP_003404535.1| - 0.018 14.6 0.5 4.3 7.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1451 PF07295.11 gi|284166256|ref|YP_003404535.1| - 0.023 14.7 0.2 0.029 14.4 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain YdjO PF14169.6 gi|284166256|ref|YP_003404535.1| - 0.042 13.6 0.7 0.064 13.0 0.7 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO TF_Zn_Ribbon PF08271.12 gi|284166256|ref|YP_003404535.1| - 0.093 12.3 6.2 0.35 10.4 3.1 2.2 1 1 2 3 3 3 0 TFIIB zinc-binding DUF983 PF06170.12 gi|284166256|ref|YP_003404535.1| - 0.26 11.7 2.2 0.39 11.1 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-Mss51 PF13824.6 gi|284166256|ref|YP_003404535.1| - 0.31 11.2 3.0 6.4 7.0 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.7 gi|284166256|ref|YP_003404535.1| - 0.97 9.9 6.3 2.7 8.4 2.9 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 cobW PF02492.19 gi|284166257|ref|YP_003404536.1| - 4e-50 169.9 0.1 5.1e-50 169.5 0.1 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|284166257|ref|YP_003404536.1| - 4.5e-27 93.8 0.0 8.6e-27 92.9 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|284166257|ref|YP_003404536.1| - 4e-07 30.1 0.1 0.0062 16.5 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|284166257|ref|YP_003404536.1| - 0.00042 19.9 0.0 0.52 9.8 0.0 2.4 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain T2SSE PF00437.20 gi|284166257|ref|YP_003404536.1| - 0.0022 17.1 0.1 0.0043 16.2 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|284166257|ref|YP_003404536.1| - 0.0044 17.4 0.7 0.016 15.6 0.7 2.1 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|284166257|ref|YP_003404536.1| - 0.0057 16.7 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TrwB_AAD_bind PF10412.9 gi|284166257|ref|YP_003404536.1| - 0.0083 15.1 0.0 0.013 14.4 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|284166257|ref|YP_003404536.1| - 0.012 15.7 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|284166257|ref|YP_003404536.1| - 0.016 14.5 0.0 0.032 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|284166257|ref|YP_003404536.1| - 0.026 14.6 0.1 3 7.9 0.1 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|284166257|ref|YP_003404536.1| - 0.042 14.0 0.1 0.2 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|284166257|ref|YP_003404536.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|284166257|ref|YP_003404536.1| - 0.094 13.0 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|284166257|ref|YP_003404536.1| - 0.21 12.1 0.0 0.39 11.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Cytochrom_B559a PF00284.20 gi|284166258|ref|YP_003404537.1| - 0.025 14.3 0.1 0.056 13.2 0.1 1.6 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit ArsA_ATPase PF02374.15 gi|284166259|ref|YP_003404538.1| - 6.8e-68 229.1 0.0 8.2e-68 228.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|284166259|ref|YP_003404538.1| - 7e-10 39.1 0.0 1.2e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284166259|ref|YP_003404538.1| - 3.8e-09 36.7 0.0 9e-09 35.5 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|284166259|ref|YP_003404538.1| - 0.00038 20.0 0.0 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|284166259|ref|YP_003404538.1| - 0.0011 18.5 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|284166259|ref|YP_003404538.1| - 0.0053 16.3 0.9 0.027 14.1 0.7 2.1 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|284166259|ref|YP_003404538.1| - 0.021 13.8 0.0 0.11 11.5 0.1 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|284166259|ref|YP_003404538.1| - 0.023 14.4 0.1 0.043 13.5 0.1 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_26 PF13500.6 gi|284166259|ref|YP_003404538.1| - 0.029 14.2 1.4 0.047 13.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|284166259|ref|YP_003404538.1| - 0.035 13.6 0.0 0.093 12.2 0.0 1.7 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|284166259|ref|YP_003404538.1| - 0.09 12.5 0.0 0.22 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|284166259|ref|YP_003404538.1| - 0.12 11.9 0.1 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein HATPase_c PF02518.26 gi|284166260|ref|YP_003404539.1| - 1e-23 84.0 0.0 3.6e-23 82.2 0.0 1.8 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284166260|ref|YP_003404539.1| - 2.5e-11 43.5 2.3 3.1e-11 43.2 0.2 2.3 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|284166260|ref|YP_003404539.1| - 8.8e-07 28.6 1.4 1.6e-06 27.8 1.4 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|284166260|ref|YP_003404539.1| - 0.0041 17.0 0.0 0.0082 16.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284166260|ref|YP_003404539.1| - 0.0054 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain bZIP_2 PF07716.15 gi|284166260|ref|YP_003404539.1| - 0.092 12.8 2.2 0.18 11.9 2.2 1.4 1 0 0 1 1 1 0 Basic region leucine zipper Phage_holin_3_6 PF07332.11 gi|284166260|ref|YP_003404539.1| - 0.26 11.3 5.7 18 5.4 3.9 2.3 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III MMR_HSR1_C PF08438.10 gi|284166261|ref|YP_003404540.1| - 1.4e-31 109.4 0.0 2.8e-31 108.4 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|284166261|ref|YP_003404540.1| - 2e-20 73.0 0.0 1.1e-18 67.4 0.0 2.9 2 1 1 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|284166261|ref|YP_003404540.1| - 1.1e-08 35.0 0.0 2.7e-08 33.8 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|284166261|ref|YP_003404540.1| - 8.9e-07 28.6 0.1 0.00039 20.0 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|284166261|ref|YP_003404540.1| - 0.03 13.9 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain YchF-GTPase_C PF06071.13 gi|284166261|ref|YP_003404540.1| - 0.033 14.4 0.0 3.8 7.8 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF933) Dynamin_N PF00350.23 gi|284166261|ref|YP_003404540.1| - 0.068 13.2 0.6 0.53 10.3 0.0 2.6 3 1 0 3 3 3 0 Dynamin family VWA_2 PF13519.6 gi|284166261|ref|YP_003404540.1| - 0.072 13.7 0.1 15 6.3 0.0 3.1 2 1 1 3 3 3 0 von Willebrand factor type A domain RsgA_GTPase PF03193.16 gi|284166261|ref|YP_003404540.1| - 0.12 12.3 0.2 6.6 6.6 0.1 2.4 2 0 0 2 2 2 0 RsgA GTPase Roc PF08477.13 gi|284166261|ref|YP_003404540.1| - 0.16 12.2 0.0 2.2 8.5 0.0 2.6 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase HTH_24 PF13412.6 gi|284166262|ref|YP_003404541.1| - 4e-13 48.7 0.5 6.6e-13 48.0 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284166262|ref|YP_003404541.1| - 1.1e-10 41.1 0.4 2.4e-10 40.0 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|284166262|ref|YP_003404541.1| - 5.9e-09 35.7 0.1 1.2e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|284166262|ref|YP_003404541.1| - 1.8e-05 24.3 0.3 3.8e-05 23.3 0.1 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|284166262|ref|YP_003404541.1| - 2.8e-05 23.9 0.1 0.00013 21.8 0.0 1.9 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|284166262|ref|YP_003404541.1| - 7.1e-05 22.9 0.0 0.00015 21.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|284166262|ref|YP_003404541.1| - 0.00017 21.5 0.0 0.00031 20.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|284166262|ref|YP_003404541.1| - 0.00024 20.8 0.1 0.00063 19.5 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.22 gi|284166262|ref|YP_003404541.1| - 0.00031 20.6 0.1 0.00099 19.0 0.0 1.8 2 0 0 2 2 2 1 MarR family GntR PF00392.21 gi|284166262|ref|YP_003404541.1| - 0.00033 20.3 0.4 0.0007 19.2 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|284166262|ref|YP_003404541.1| - 0.00049 19.8 0.2 0.00087 19.0 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|284166262|ref|YP_003404541.1| - 0.00065 19.7 0.0 0.0018 18.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284166262|ref|YP_003404541.1| - 0.0011 18.7 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_CodY PF08222.11 gi|284166262|ref|YP_003404541.1| - 0.0014 18.1 0.2 0.003 17.1 0.2 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_29 PF13551.6 gi|284166262|ref|YP_003404541.1| - 0.0014 18.6 0.1 0.0034 17.4 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn helix FaeA PF04703.12 gi|284166262|ref|YP_003404541.1| - 0.0016 18.8 0.0 0.0036 17.6 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.16 gi|284166262|ref|YP_003404541.1| - 0.0027 17.5 0.1 0.0057 16.4 0.1 1.6 1 1 0 1 1 1 1 LexA DNA binding domain HTH_28 PF13518.6 gi|284166262|ref|YP_003404541.1| - 0.0027 17.8 0.1 0.0069 16.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|284166262|ref|YP_003404541.1| - 0.0053 17.1 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_38 PF13936.6 gi|284166262|ref|YP_003404541.1| - 0.0065 16.2 0.4 0.014 15.1 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|284166262|ref|YP_003404541.1| - 0.0098 15.5 0.0 0.024 14.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|284166262|ref|YP_003404541.1| - 0.012 15.4 0.2 0.028 14.2 0.2 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain AbiEi_4 PF13338.6 gi|284166262|ref|YP_003404541.1| - 0.018 15.2 0.8 0.46 10.7 0.1 2.5 2 1 1 3 3 3 0 Transcriptional regulator, AbiEi antitoxin TrmB PF01978.19 gi|284166262|ref|YP_003404541.1| - 0.021 14.7 0.2 0.084 12.8 0.0 2.0 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|284166262|ref|YP_003404541.1| - 0.024 14.3 0.3 0.065 12.9 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HrcA_DNA-bdg PF03444.15 gi|284166262|ref|YP_003404541.1| - 0.025 14.2 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MerR PF00376.23 gi|284166262|ref|YP_003404541.1| - 0.03 14.1 0.3 0.072 12.9 0.3 1.7 1 1 0 1 1 1 0 MerR family regulatory protein HTH_5 PF01022.20 gi|284166262|ref|YP_003404541.1| - 0.045 13.6 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RepL PF05732.11 gi|284166262|ref|YP_003404541.1| - 0.052 13.0 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_47 PF16221.5 gi|284166262|ref|YP_003404541.1| - 0.06 12.9 0.1 0.34 10.5 0.0 2.1 1 1 0 2 2 2 0 winged helix-turn-helix HTH_27 PF13463.6 gi|284166262|ref|YP_003404541.1| - 0.072 13.6 0.1 0.14 12.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|284166262|ref|YP_003404541.1| - 0.08 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.11 gi|284166262|ref|YP_003404541.1| - 0.082 13.6 0.1 1.5 9.5 0.0 2.4 2 1 0 2 2 2 0 Replication protein A C terminal DDRGK PF09756.9 gi|284166262|ref|YP_003404541.1| - 0.085 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_19 PF12844.7 gi|284166262|ref|YP_003404541.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.11 gi|284166262|ref|YP_003404541.1| - 0.15 11.9 0.1 0.74 9.7 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_31 PF13560.6 gi|284166262|ref|YP_003404541.1| - 0.17 12.3 1.3 0.47 10.8 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain pXO2-72 PF17443.2 gi|284166262|ref|YP_003404541.1| - 0.2 11.9 0.0 0.33 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 HalOD1 PF18545.1 gi|284166263|ref|YP_003404542.1| - 2.3e-16 59.8 0.0 3.1e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Suv3_N PF18114.1 gi|284166264|ref|YP_003404543.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Suv3 helical N-terminal domain Polyketide_cyc2 PF10604.9 gi|284166265|ref|YP_003404544.1| - 0.0007 19.9 1.3 0.0015 18.8 1.3 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|284166265|ref|YP_003404544.1| - 0.05 13.8 0.0 0.067 13.4 0.0 1.4 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Spermine_synth PF01564.17 gi|284166266|ref|YP_003404545.1| - 5.5e-09 35.7 0.4 9.4e-09 34.9 0.4 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain adh_short PF00106.25 gi|284166267|ref|YP_003404546.1| - 8.1e-31 107.0 0.1 4.8e-30 104.5 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284166267|ref|YP_003404546.1| - 2.9e-27 95.8 0.3 1.1e-26 93.9 0.3 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284166267|ref|YP_003404546.1| - 6e-11 42.6 0.1 8.3e-11 42.1 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284166267|ref|YP_003404546.1| - 0.019 14.4 0.0 0.049 13.1 0.1 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|284166267|ref|YP_003404546.1| - 0.034 13.5 0.0 0.059 12.7 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CoA_binding_2 PF13380.6 gi|284166267|ref|YP_003404546.1| - 0.073 13.6 0.3 0.2 12.2 0.3 1.8 2 0 0 2 2 2 0 CoA binding domain Usp PF00582.26 gi|284166268|ref|YP_003404547.1| - 3.5e-13 50.3 2.4 4e-13 50.1 2.4 1.1 1 0 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|284166268|ref|YP_003404547.1| - 0.098 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain E1_dh PF00676.20 gi|284166270|ref|YP_003404549.1| - 1.5e-75 253.9 0.0 1.9e-75 253.6 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|284166270|ref|YP_003404549.1| - 3.9e-06 26.3 0.0 5.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|284166270|ref|YP_003404549.1| - 0.0086 15.9 0.2 0.018 14.8 0.2 1.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|284166270|ref|YP_003404549.1| - 0.02 13.9 0.1 0.054 12.4 0.0 1.5 1 1 1 2 2 2 0 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|284166270|ref|YP_003404549.1| - 0.022 14.5 0.3 0.048 13.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DDR PF08841.10 gi|284166271|ref|YP_003404550.1| - 0.22 10.5 1.1 0.28 10.1 1.1 1.1 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain CoA_transf_3 PF02515.17 gi|284166272|ref|YP_003404551.1| - 5.6e-107 358.0 0.1 6.3e-107 357.9 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III DUF3626 PF12294.8 gi|284166272|ref|YP_003404551.1| - 0.18 10.8 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3626) CBS PF00571.28 gi|284166273|ref|YP_003404552.1| - 6.9e-22 77.7 4.5 1.7e-10 41.2 0.3 2.4 3 0 0 3 3 3 2 CBS domain Hexapep PF00132.24 gi|284166274|ref|YP_003404553.1| - 8.4e-13 47.5 8.1 4e-05 23.2 1.5 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284166274|ref|YP_003404553.1| - 2.7e-08 33.4 3.1 0.00016 21.4 0.5 3.1 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|284166274|ref|YP_003404553.1| - 0.034 14.5 3.3 0.058 13.7 3.3 1.5 1 0 0 1 1 1 0 Polymer-forming cytoskeletal HHH_5 PF14520.6 gi|284166275|ref|YP_003404554.1| - 6.9e-07 29.8 0.2 2.3e-06 28.1 0.2 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4455 PF14643.6 gi|284166275|ref|YP_003404554.1| - 0.00075 18.3 23.0 0.00097 17.9 22.7 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4455) Apolipoprotein PF01442.18 gi|284166275|ref|YP_003404554.1| - 0.005 16.7 36.9 0.02 14.8 32.4 2.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain FbpA PF05833.11 gi|284166275|ref|YP_003404554.1| - 0.0086 14.9 13.5 0.011 14.5 13.5 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF2913 PF11140.8 gi|284166275|ref|YP_003404554.1| - 0.015 15.0 3.7 0.015 15.0 3.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2913) DUF883 PF05957.13 gi|284166275|ref|YP_003404554.1| - 0.016 15.8 6.7 0.016 15.8 6.7 4.2 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) ApoLp-III PF07464.11 gi|284166275|ref|YP_003404554.1| - 0.016 15.3 23.0 0.24 11.5 17.7 3.0 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Rsd_AlgQ PF04353.13 gi|284166275|ref|YP_003404554.1| - 0.019 14.9 5.6 0.019 14.9 5.6 2.4 1 1 1 2 2 2 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Prefoldin PF02996.17 gi|284166275|ref|YP_003404554.1| - 0.021 14.8 6.7 0.021 14.8 6.7 4.0 3 1 2 5 5 3 0 Prefoldin subunit YtxH PF12732.7 gi|284166275|ref|YP_003404554.1| - 0.068 13.7 21.9 0.18 12.4 4.4 4.0 2 1 1 3 3 3 0 YtxH-like protein Glypican PF01153.19 gi|284166275|ref|YP_003404554.1| - 0.18 10.6 6.5 0.14 10.9 1.5 2.2 2 1 0 2 2 2 0 Glypican DUF4332 PF14229.6 gi|284166275|ref|YP_003404554.1| - 0.19 12.0 0.2 0.19 12.0 0.2 4.2 3 2 2 5 5 5 0 Domain of unknown function (DUF4332) Prominin PF05478.11 gi|284166275|ref|YP_003404554.1| - 0.36 8.7 13.6 0.35 8.8 6.4 1.6 1 1 1 2 2 2 0 Prominin DUF3584 PF12128.8 gi|284166275|ref|YP_003404554.1| - 0.44 8.0 31.3 0.51 7.8 31.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ApoC-I PF04691.12 gi|284166275|ref|YP_003404554.1| - 0.56 10.2 11.8 1.2 9.1 1.9 3.7 3 1 0 3 3 3 0 Apolipoprotein C-I (ApoC-1) BLOC1_2 PF10046.9 gi|284166275|ref|YP_003404554.1| - 0.69 10.2 17.2 0.19 12.1 4.7 2.6 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Raptor_N PF14538.6 gi|284166275|ref|YP_003404554.1| - 0.81 9.6 2.3 4.1 7.3 2.1 2.1 1 1 1 2 2 2 0 Raptor N-terminal CASPase like domain Fib_alpha PF08702.10 gi|284166275|ref|YP_003404554.1| - 0.88 9.7 13.2 1.9 8.7 11.8 2.1 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Exonuc_VII_L PF02601.15 gi|284166275|ref|YP_003404554.1| - 1.2 8.6 18.3 2.6 7.5 18.3 1.7 1 1 0 1 1 1 0 Exonuclease VII, large subunit CorA PF01544.18 gi|284166275|ref|YP_003404554.1| - 1.4 8.2 15.4 0.6 9.4 8.5 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein LMBR1 PF04791.16 gi|284166275|ref|YP_003404554.1| - 1.4 7.7 8.4 1.9 7.3 8.4 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF5344 PF17279.2 gi|284166275|ref|YP_003404554.1| - 1.8 9.2 16.8 0.25 11.9 3.4 3.0 1 1 1 2 2 2 0 Family of unknown function (DUF5344) Baculo_PEP_C PF04513.12 gi|284166275|ref|YP_003404554.1| - 2.3 8.3 16.8 1.6 8.8 11.0 2.5 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2935 PF11155.8 gi|284166275|ref|YP_003404554.1| - 2.9 8.3 10.5 2.4 8.5 3.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) MRP-S26 PF14943.6 gi|284166275|ref|YP_003404554.1| - 3.1 7.7 21.2 6.1 6.7 20.6 1.8 1 1 0 1 1 1 0 Mitochondrial ribosome subunit S26 DUF1484 PF07363.11 gi|284166275|ref|YP_003404554.1| - 3.6 8.6 13.4 3.1 8.9 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1484) V_ATPase_I PF01496.19 gi|284166275|ref|YP_003404554.1| - 4 5.2 11.2 5 4.9 11.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF948 PF06103.11 gi|284166275|ref|YP_003404554.1| - 5.5 7.3 15.0 9.9 6.5 4.0 3.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|284166275|ref|YP_003404554.1| - 6.1 6.9 13.8 5.8 7.0 4.1 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF885 PF05960.11 gi|284166275|ref|YP_003404554.1| - 8.1 6.0 22.2 15 5.0 22.1 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Metallophos PF00149.28 gi|284166276|ref|YP_003404555.1| - 5.3e-07 30.3 0.1 1.1e-05 26.1 0.1 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|284166276|ref|YP_003404555.1| - 5.3e-07 30.0 1.6 2.2e-06 28.0 1.6 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|284166276|ref|YP_003404555.1| - 0.034 13.5 0.0 0.052 12.9 0.0 1.4 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Gln-synt_C PF00120.24 gi|284166277|ref|YP_003404556.1| - 1e-137 458.8 0.0 1.3e-137 458.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|284166277|ref|YP_003404556.1| - 3.1e-32 110.1 0.0 6.4e-32 109.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|284166277|ref|YP_003404556.1| - 0.00016 21.5 0.0 0.0012 18.7 0.0 2.1 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain AsnC_trans_reg PF01037.21 gi|284166278|ref|YP_003404557.1| - 2.2e-12 46.8 0.0 3.6e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|284166278|ref|YP_003404557.1| - 7.5e-10 38.2 0.3 1.4e-09 37.3 0.1 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284166278|ref|YP_003404557.1| - 1.5e-06 27.9 0.0 2.5e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|284166278|ref|YP_003404557.1| - 3.4e-06 26.8 0.1 5.7e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284166278|ref|YP_003404557.1| - 5.3e-06 26.3 0.0 9.8e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|284166278|ref|YP_003404557.1| - 5.7e-05 23.1 0.1 0.00012 22.0 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284166278|ref|YP_003404557.1| - 0.00016 21.3 0.0 0.00027 20.6 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|284166278|ref|YP_003404557.1| - 0.0016 18.5 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284166278|ref|YP_003404557.1| - 0.0023 17.8 0.1 0.0044 16.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|284166278|ref|YP_003404557.1| - 0.0025 17.4 0.1 0.0059 16.2 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|284166278|ref|YP_003404557.1| - 0.0027 17.7 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|284166278|ref|YP_003404557.1| - 0.003 17.4 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|284166278|ref|YP_003404557.1| - 0.0079 16.0 0.0 0.017 14.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.22 gi|284166278|ref|YP_003404557.1| - 0.0086 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|284166278|ref|YP_003404557.1| - 0.028 14.6 0.0 0.061 13.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|284166278|ref|YP_003404557.1| - 0.051 14.1 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mga PF05043.13 gi|284166278|ref|YP_003404557.1| - 0.054 14.1 0.0 0.2 12.2 0.0 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_IclR PF09339.10 gi|284166278|ref|YP_003404557.1| - 0.098 12.5 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cdc6_C PF09079.11 gi|284166278|ref|YP_003404557.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_40 PF14493.6 gi|284166278|ref|YP_003404557.1| - 0.12 12.9 0.0 0.18 12.3 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_50 PF18024.1 gi|284166278|ref|YP_003404557.1| - 0.19 11.4 0.0 0.38 10.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_membrane PF00664.23 gi|284166279|ref|YP_003404558.1| - 2.4e-37 129.1 7.2 2.9e-37 128.8 7.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|284166279|ref|YP_003404558.1| - 2.1e-35 122.2 0.0 3.9e-35 121.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|284166279|ref|YP_003404558.1| - 9.5e-06 25.2 0.0 0.00022 20.8 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284166279|ref|YP_003404558.1| - 0.00014 22.3 0.4 0.00031 21.2 0.4 1.6 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284166279|ref|YP_003404558.1| - 0.00023 21.1 0.0 0.00045 20.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|284166279|ref|YP_003404558.1| - 0.0026 18.0 0.1 0.029 14.7 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|284166279|ref|YP_003404558.1| - 0.0046 17.1 0.1 0.068 13.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|284166279|ref|YP_003404558.1| - 0.0089 15.8 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|284166279|ref|YP_003404558.1| - 0.0093 15.8 0.1 0.11 12.3 0.0 2.4 2 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|284166279|ref|YP_003404558.1| - 0.01 16.3 0.0 0.065 13.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284166279|ref|YP_003404558.1| - 0.013 15.2 0.9 0.09 12.5 0.9 2.3 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|284166279|ref|YP_003404558.1| - 0.013 15.6 0.1 0.083 13.0 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|284166279|ref|YP_003404558.1| - 0.015 15.0 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|284166279|ref|YP_003404558.1| - 0.018 14.3 0.0 0.04 13.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|284166279|ref|YP_003404558.1| - 0.042 14.1 0.9 3.4 7.9 0.1 2.6 1 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|284166279|ref|YP_003404558.1| - 0.057 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF87 PF01935.17 gi|284166279|ref|YP_003404558.1| - 0.06 13.4 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_5 PF07728.14 gi|284166279|ref|YP_003404558.1| - 0.064 13.2 0.0 0.2 11.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|284166279|ref|YP_003404558.1| - 0.078 12.5 0.0 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|284166279|ref|YP_003404558.1| - 0.093 13.2 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|284166279|ref|YP_003404558.1| - 0.11 12.1 0.6 3.9 7.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|284166279|ref|YP_003404558.1| - 0.15 12.6 0.0 0.69 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF3487 PF11990.8 gi|284166279|ref|YP_003404558.1| - 1.8 8.5 7.8 0.48 10.3 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) DUF308 PF03729.13 gi|284166280|ref|YP_003404559.1| - 0.011 16.1 2.5 0.013 15.8 2.5 1.2 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) SdpI PF13630.6 gi|284166280|ref|YP_003404559.1| - 0.066 13.4 1.2 0.076 13.2 1.2 1.0 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2892 PF11127.8 gi|284166280|ref|YP_003404559.1| - 0.27 11.3 3.7 0.32 11.0 3.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) PGPGW PF09656.10 gi|284166280|ref|YP_003404559.1| - 0.6 9.7 6.1 2 8.0 0.2 2.1 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) OppC_N PF12911.7 gi|284166283|ref|YP_003404562.1| - 0.076 13.0 0.1 0.076 13.0 0.1 4.1 5 1 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C DUF3927 PF13064.6 gi|284166283|ref|YP_003404562.1| - 0.77 9.8 4.2 1 9.4 2.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3927) DUF3040 PF11239.8 gi|284166285|ref|YP_003404564.1| - 4.1 7.8 6.9 3.5 7.9 0.6 3.3 3 2 0 3 3 3 0 Protein of unknown function (DUF3040) Cpn60_TCP1 PF00118.24 gi|284166286|ref|YP_003404565.1| - 1.2e-166 555.2 13.7 1.3e-166 555.1 13.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Epimerase PF01370.21 gi|284166287|ref|YP_003404566.1| - 1.1e-51 175.6 0.0 1.3e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284166287|ref|YP_003404566.1| - 1.1e-41 143.3 0.0 6.6e-41 140.8 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|284166287|ref|YP_003404566.1| - 2.3e-16 59.7 0.0 2.7e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|284166287|ref|YP_003404566.1| - 1.4e-15 57.2 0.0 1.9e-14 53.5 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|284166287|ref|YP_003404566.1| - 4.2e-15 55.5 0.0 4.7e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|284166287|ref|YP_003404566.1| - 5.2e-15 55.8 0.0 8.7e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284166287|ref|YP_003404566.1| - 9.3e-11 41.4 0.0 1.5e-05 24.3 0.0 2.8 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|284166287|ref|YP_003404566.1| - 3.7e-08 33.2 0.0 6.1e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 NmrA-like family adh_short PF00106.25 gi|284166287|ref|YP_003404566.1| - 0.00022 20.7 0.1 0.027 13.9 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.18 gi|284166287|ref|YP_003404566.1| - 0.015 15.5 0.1 0.041 14.2 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain KR PF08659.10 gi|284166287|ref|YP_003404566.1| - 0.02 14.8 0.1 0.41 10.5 0.1 2.3 2 0 0 2 2 2 0 KR domain Ldh_1_N PF00056.23 gi|284166287|ref|YP_003404566.1| - 0.05 13.7 0.0 0.077 13.1 0.0 1.2 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Pentapeptide PF00805.22 gi|284166288|ref|YP_003404567.1| - 3e-20 71.5 9.1 2e-09 36.9 1.1 3.3 2 1 0 3 3 3 3 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.16 gi|284166288|ref|YP_003404567.1| - 5.3e-14 52.0 1.0 5.3e-14 52.0 1.0 1.6 2 0 0 2 2 2 1 Ion channel Pentapeptide_4 PF13599.6 gi|284166288|ref|YP_003404567.1| - 4e-11 42.9 0.0 1.2e-07 31.8 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|284166288|ref|YP_003404567.1| - 1.8e-10 40.8 5.7 1.8e-05 24.8 0.7 2.7 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) MFAP1 PF06991.11 gi|284166288|ref|YP_003404567.1| - 0.14 12.0 1.1 0.19 11.5 1.1 1.1 1 0 0 1 1 1 0 Microfibril-associated/Pre-mRNA processing SRAP PF02586.14 gi|284166289|ref|YP_003404568.1| - 2.9e-64 216.6 0.0 3.5e-64 216.4 0.0 1.1 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) OrfB_Zn_ribbon PF07282.11 gi|284166291|ref|YP_003404570.1| - 1.6e-21 76.0 1.7 3e-21 75.1 1.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|284166291|ref|YP_003404570.1| - 3.2e-09 37.0 1.0 5.1e-09 36.4 0.1 1.8 2 0 0 2 2 2 1 Probable transposase HypA PF01155.19 gi|284166291|ref|YP_003404570.1| - 0.0092 16.0 0.8 0.016 15.2 0.2 1.7 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|284166291|ref|YP_003404570.1| - 6.2 6.6 6.7 13 5.6 1.0 2.5 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribonuc_L-PSP PF01042.21 gi|284166293|ref|YP_003404572.1| - 3.6e-39 133.5 0.1 4e-39 133.3 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP MARVEL PF01284.23 gi|284166294|ref|YP_003404573.1| - 0.021 14.9 3.6 0.026 14.5 3.6 1.1 1 0 0 1 1 1 0 Membrane-associating domain InaF-motif PF15018.6 gi|284166294|ref|YP_003404573.1| - 4.1 7.4 10.3 9.6 6.2 2.3 2.3 2 0 0 2 2 2 0 TRP-interacting helix Sec20 PF03908.13 gi|284166294|ref|YP_003404573.1| - 6.5 6.8 5.4 2.2 8.3 0.8 2.0 2 0 0 2 2 2 0 Sec20 PALP PF00291.25 gi|284166295|ref|YP_003404574.1| - 1.1e-87 294.2 5.0 1.3e-87 294.0 5.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|284166295|ref|YP_003404574.1| - 0.0001 22.8 0.0 0.003 18.1 0.0 2.6 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|284166295|ref|YP_003404574.1| - 0.00027 20.6 0.1 0.0012 18.6 0.0 2.1 2 0 0 2 2 2 1 ACT domain FtsA PF14450.6 gi|284166295|ref|YP_003404574.1| - 0.07 13.6 0.4 0.23 11.9 0.4 1.9 1 1 0 1 1 1 0 Cell division protein FtsA GGACT PF06094.12 gi|284166296|ref|YP_003404575.1| - 2.6e-17 63.5 0.0 3.2e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|284166296|ref|YP_003404575.1| - 0.00071 19.9 0.0 0.00089 19.6 0.0 1.2 1 0 0 1 1 1 1 AIG2-like family Citrate_synt PF00285.21 gi|284166297|ref|YP_003404576.1| - 2.7e-128 428.1 0.0 3e-128 427.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain HTH_10 PF04967.12 gi|284166298|ref|YP_003404577.1| - 1.2e-21 76.2 0.5 3.7e-21 74.7 0.2 2.0 2 0 0 2 2 2 1 HTH DNA binding domain HTH_5 PF01022.20 gi|284166298|ref|YP_003404577.1| - 0.00044 20.1 0.1 0.2 11.6 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284166298|ref|YP_003404577.1| - 0.00056 19.7 0.2 1.1 9.1 0.0 3.8 4 0 0 4 4 4 1 IclR helix-turn-helix domain GerE PF00196.19 gi|284166298|ref|YP_003404577.1| - 0.0057 16.2 0.3 0.049 13.2 0.3 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_8 PF02954.19 gi|284166298|ref|YP_003404577.1| - 0.019 14.7 0.1 0.059 13.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4 PF04545.16 gi|284166298|ref|YP_003404577.1| - 0.046 13.2 0.4 0.3 10.6 0.0 2.5 3 1 0 3 3 3 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|284166298|ref|YP_003404577.1| - 0.057 13.5 0.0 0.18 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase BAT PF15915.5 gi|284166298|ref|YP_003404577.1| - 0.059 13.2 11.4 0.1 12.5 11.4 1.3 1 0 0 1 1 1 0 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|284166298|ref|YP_003404577.1| - 0.063 12.9 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|284166298|ref|YP_003404577.1| - 0.064 13.7 0.3 0.3 11.6 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|284166298|ref|YP_003404577.1| - 0.073 13.0 0.1 0.22 11.5 0.1 1.9 1 1 0 1 1 1 0 MarR family DUF134 PF02001.16 gi|284166298|ref|YP_003404577.1| - 0.11 13.0 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_Tnp_1_2 PF13022.6 gi|284166298|ref|YP_003404577.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase FrhB_FdhB_C PF04432.13 gi|284166299|ref|YP_003404578.1| - 1.9e-25 89.5 0.0 1.9e-25 89.5 0.0 1.8 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|284166299|ref|YP_003404578.1| - 4.7e-18 65.1 0.1 9.9e-18 64.1 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|284166299|ref|YP_003404578.1| - 1.1e-09 38.3 8.5 1.1e-09 38.3 8.5 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284166299|ref|YP_003404578.1| - 4.9e-09 36.2 6.9 4.9e-09 36.2 6.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284166299|ref|YP_003404578.1| - 6e-07 29.5 9.3 6e-07 29.5 9.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284166299|ref|YP_003404578.1| - 1.1e-06 29.4 7.7 0.021 15.7 2.0 3.2 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|284166299|ref|YP_003404578.1| - 8.7e-06 26.2 14.4 1.2e-05 25.8 11.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284166299|ref|YP_003404578.1| - 9.9e-06 25.2 19.2 0.0001 22.0 3.5 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284166299|ref|YP_003404578.1| - 2.3e-05 24.2 12.3 0.0016 18.4 4.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|284166299|ref|YP_003404578.1| - 0.00014 22.1 19.1 0.00084 19.7 4.4 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284166299|ref|YP_003404578.1| - 0.001 19.1 4.0 0.001 19.1 4.0 2.8 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|284166299|ref|YP_003404578.1| - 0.0049 17.4 15.4 0.031 14.8 2.5 2.8 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284166299|ref|YP_003404578.1| - 0.0058 16.8 2.9 0.0058 16.8 2.9 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|284166299|ref|YP_003404578.1| - 0.013 15.3 0.7 0.013 15.3 0.7 1.8 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|284166299|ref|YP_003404578.1| - 0.014 15.8 14.1 0.47 10.9 4.1 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284166299|ref|YP_003404578.1| - 0.048 14.4 10.6 0.6 10.9 2.8 3.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|284166299|ref|YP_003404578.1| - 0.055 14.0 15.5 0.4 11.2 5.3 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|284166299|ref|YP_003404578.1| - 6.4 8.0 21.4 0.22 12.6 4.4 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|284166299|ref|YP_003404578.1| - 6.9 7.6 17.5 0.84 10.5 2.8 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 gi|284166300|ref|YP_003404579.1| - 1.7e-38 131.6 0.0 9.7e-32 109.7 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain Rhodanese PF00581.20 gi|284166300|ref|YP_003404579.1| - 2.9e-35 121.0 0.1 3.5e-17 62.9 0.0 2.6 3 0 0 3 3 3 2 Rhodanese-like domain NIR_SIR_ferr PF03460.17 gi|284166300|ref|YP_003404579.1| - 3.4e-33 113.3 1.4 6.1e-15 54.8 0.3 4.3 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain SepF PF04472.12 gi|284166301|ref|YP_003404580.1| - 4.2e-17 62.2 2.4 6.7e-17 61.5 2.4 1.3 1 0 0 1 1 1 1 Cell division protein SepF Lar_N PF09861.9 gi|284166301|ref|YP_003404580.1| - 0.0085 15.3 0.3 0.011 14.9 0.3 1.4 1 0 0 1 1 1 1 Lactate racemase N-terminal domain Rx_N PF18052.1 gi|284166301|ref|YP_003404580.1| - 0.09 13.1 0.8 0.19 12.0 0.7 1.5 1 1 0 1 1 1 0 Rx N-terminal domain DUF1028 PF06267.12 gi|284166302|ref|YP_003404581.1| - 1.8e-64 217.1 0.4 2.2e-64 216.8 0.4 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) MFS_MOT1 PF16983.5 gi|284166303|ref|YP_003404582.1| - 1.7e-41 141.1 51.9 2e-25 89.3 12.9 3.5 3 1 1 4 4 4 3 Molybdate transporter of MFS superfamily IMPDH PF00478.25 gi|284166306|ref|YP_003404585.1| - 1.3e-121 405.8 5.7 1.6e-121 405.6 5.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|284166306|ref|YP_003404585.1| - 1.5e-10 41.0 11.2 5.6e-05 22.7 7.5 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|284166306|ref|YP_003404585.1| - 6.1e-08 32.1 7.9 1e-07 31.4 7.6 1.4 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|284166306|ref|YP_003404585.1| - 7.3e-07 28.9 1.7 9.6e-05 22.0 0.1 2.3 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|284166306|ref|YP_003404585.1| - 0.00022 20.5 2.9 0.00056 19.2 2.6 1.8 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|284166306|ref|YP_003404585.1| - 0.0083 15.4 0.8 0.015 14.5 0.8 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|284166306|ref|YP_003404585.1| - 0.02 14.3 2.4 0.036 13.4 2.3 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase Aldolase PF01081.19 gi|284166306|ref|YP_003404585.1| - 0.029 13.8 3.8 0.07 12.5 1.3 2.2 1 1 1 2 2 2 0 KDPG and KHG aldolase Methyltransf_31 PF13847.6 gi|284166307|ref|YP_003404586.1| - 1.5e-36 125.5 0.0 2.3e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284166307|ref|YP_003404586.1| - 2e-23 82.9 0.2 5.8e-23 81.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284166307|ref|YP_003404586.1| - 5.8e-23 81.4 0.0 1.3e-22 80.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284166307|ref|YP_003404586.1| - 7.2e-17 61.5 0.0 1.4e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|284166307|ref|YP_003404586.1| - 5.1e-11 43.2 0.0 1.1e-10 42.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166307|ref|YP_003404586.1| - 1.4e-10 41.3 0.0 2.3e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284166307|ref|YP_003404586.1| - 3.7e-09 36.7 0.0 4.9e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|284166307|ref|YP_003404586.1| - 2.1e-06 27.4 0.0 3.2e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|284166307|ref|YP_003404586.1| - 4.1e-06 26.5 0.0 7.4e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|284166307|ref|YP_003404586.1| - 1.1e-05 24.9 0.0 1.3e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|284166307|ref|YP_003404586.1| - 0.00015 21.6 0.0 0.00036 20.5 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase UPF0020 PF01170.18 gi|284166307|ref|YP_003404586.1| - 0.00047 19.9 0.0 0.00079 19.2 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|284166307|ref|YP_003404586.1| - 0.0011 19.0 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|284166307|ref|YP_003404586.1| - 0.017 15.1 0.0 0.048 13.7 0.0 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_29 PF03141.16 gi|284166307|ref|YP_003404586.1| - 0.04 12.5 0.0 0.07 11.7 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.7 gi|284166307|ref|YP_003404586.1| - 0.051 13.5 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|284166307|ref|YP_003404586.1| - 0.053 13.6 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|284166307|ref|YP_003404586.1| - 0.23 10.9 0.0 0.48 9.9 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase HTH_5 PF01022.20 gi|284166308|ref|YP_003404587.1| - 7.1e-15 54.6 0.2 1.2e-14 53.8 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284166308|ref|YP_003404587.1| - 4.9e-14 52.1 0.6 4.9e-14 52.1 0.6 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284166308|ref|YP_003404587.1| - 2.3e-05 23.8 0.1 4.1e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|284166308|ref|YP_003404587.1| - 0.00043 20.1 0.0 0.00073 19.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|284166308|ref|YP_003404587.1| - 0.00049 20.0 0.1 0.0014 18.6 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain PaaX PF07848.12 gi|284166308|ref|YP_003404587.1| - 0.0006 20.0 0.1 0.00093 19.4 0.1 1.5 1 0 0 1 1 1 1 PaaX-like protein MarR_2 PF12802.7 gi|284166308|ref|YP_003404587.1| - 0.0024 17.7 0.8 0.0052 16.6 0.8 1.6 1 1 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|284166308|ref|YP_003404587.1| - 0.0027 18.1 0.1 0.0094 16.3 0.0 1.8 2 0 0 2 2 2 1 Penicillinase repressor HTH_CodY PF08222.11 gi|284166308|ref|YP_003404587.1| - 0.015 14.9 0.0 0.027 14.0 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain BLACT_WH PF17778.1 gi|284166308|ref|YP_003404587.1| - 0.041 13.9 0.1 0.9 9.6 0.1 2.4 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain RP-C PF03428.13 gi|284166308|ref|YP_003404587.1| - 0.041 13.5 0.2 0.064 12.9 0.2 1.5 1 1 0 1 1 1 0 Replication protein C N-terminal domain DUF4423 PF14394.6 gi|284166308|ref|YP_003404587.1| - 0.057 13.1 0.0 0.099 12.3 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_23 PF13384.6 gi|284166308|ref|YP_003404587.1| - 0.079 12.8 0.3 0.32 10.9 0.2 2.0 1 1 1 2 2 2 0 Homeodomain-like domain DUF4123 PF13503.6 gi|284166308|ref|YP_003404587.1| - 0.09 13.2 0.0 0.1 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4123) HTH_27 PF13463.6 gi|284166308|ref|YP_003404587.1| - 0.096 13.2 0.2 0.22 12.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|284166308|ref|YP_003404587.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2513 PF10711.9 gi|284166308|ref|YP_003404587.1| - 0.15 12.4 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.20 gi|284166308|ref|YP_003404587.1| - 0.16 12.3 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Ham1p_like PF01725.16 gi|284166309|ref|YP_003404588.1| - 1.5e-53 181.5 0.0 1.7e-53 181.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Pectinesterase PF01095.19 gi|284166310|ref|YP_003404589.1| - 3e-80 269.1 0.0 3.5e-80 268.9 0.0 1.0 1 0 0 1 1 1 1 Pectinesterase HTH_10 PF04967.12 gi|284166312|ref|YP_003404591.1| - 3.8e-15 55.4 0.1 6.5e-15 54.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284166312|ref|YP_003404591.1| - 0.01 15.5 0.6 3.2 7.5 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2330 PF10092.9 gi|284166312|ref|YP_003404591.1| - 0.059 12.5 0.0 0.11 11.5 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2330) DUF2892 PF11127.8 gi|284166313|ref|YP_003404592.1| - 1.9e-12 47.0 0.7 2.2e-12 46.8 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Peptidase_M22 PF00814.25 gi|284166314|ref|YP_003404593.1| - 4.4e-74 249.6 0.1 6.3e-73 245.8 0.1 2.0 1 1 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|284166314|ref|YP_003404593.1| - 0.036 13.4 0.0 0.081 12.3 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Ribosomal_S27 PF01599.19 gi|284166315|ref|YP_003404594.1| - 1.8e-11 44.0 3.1 2e-11 43.8 3.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a FYVE PF01363.21 gi|284166315|ref|YP_003404594.1| - 0.0025 17.9 0.9 0.0027 17.8 0.9 1.1 1 0 0 1 1 1 1 FYVE zinc finger Nudix_N_2 PF14803.6 gi|284166315|ref|YP_003404594.1| - 0.0061 16.5 5.7 0.47 10.4 0.3 2.1 2 0 0 2 2 2 2 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|284166315|ref|YP_003404594.1| - 0.009 15.9 1.0 0.013 15.4 1.0 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.19 gi|284166315|ref|YP_003404594.1| - 0.0096 16.1 1.8 0.012 15.8 1.8 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|284166315|ref|YP_003404594.1| - 0.017 14.6 2.8 0.024 14.1 2.3 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|284166315|ref|YP_003404594.1| - 0.082 12.3 6.2 0.32 10.5 6.2 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|284166315|ref|YP_003404594.1| - 0.15 12.0 1.4 0.17 11.9 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|284166315|ref|YP_003404594.1| - 0.36 11.0 4.3 3.5 7.9 0.2 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_4 PF13717.6 gi|284166315|ref|YP_003404594.1| - 0.53 10.2 3.9 2.5 8.1 0.2 2.1 1 1 1 2 2 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|284166315|ref|YP_003404594.1| - 0.75 9.6 6.8 3.9 7.3 0.7 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|284166315|ref|YP_003404594.1| - 3.1 7.6 6.5 21 5.0 6.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_S24e PF01282.19 gi|284166316|ref|YP_003404595.1| - 3e-26 91.2 0.2 3.8e-26 90.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Sortilin-Vps10 PF15902.5 gi|284166318|ref|YP_003404597.1| - 2.8e-10 39.6 0.0 0.0011 17.9 0.0 3.3 1 1 1 3 3 3 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|284166318|ref|YP_003404597.1| - 5.9e-07 28.5 13.2 0.22 11.6 1.8 4.7 4 0 0 4 4 4 4 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|284166318|ref|YP_003404597.1| - 0.0015 17.9 0.1 1.4 8.1 0.0 2.9 1 1 2 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR_6 PF15899.5 gi|284166318|ref|YP_003404597.1| - 0.056 13.5 0.4 0.056 13.5 0.4 3.1 3 0 0 3 3 3 0 BNR-Asp box repeat BNR_2 PF13088.6 gi|284166318|ref|YP_003404597.1| - 0.092 12.0 0.6 15 4.8 0.0 3.0 2 1 1 3 3 3 0 BNR repeat-like domain DUF4185 PF13810.6 gi|284166318|ref|YP_003404597.1| - 0.88 8.7 6.1 7.1 5.8 0.1 3.1 2 1 2 4 4 4 0 Domain of unknown function (DUF4185) HATPase_c PF02518.26 gi|284166319|ref|YP_003404598.1| - 7e-16 58.7 0.0 1.6e-15 57.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|284166319|ref|YP_003404598.1| - 1e-06 28.9 2.7 1.7e-06 28.3 1.3 2.1 1 1 1 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|284166319|ref|YP_003404598.1| - 2.8e-05 24.1 0.2 5.7e-05 23.1 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|284166319|ref|YP_003404598.1| - 0.00028 20.7 0.2 0.00066 19.5 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|284166319|ref|YP_003404598.1| - 0.0007 19.8 0.0 0.0014 18.9 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|284166319|ref|YP_003404598.1| - 0.011 15.7 0.0 0.031 14.3 0.0 1.8 1 0 0 1 1 1 0 PAS domain HisKA_4TM PF16926.5 gi|284166319|ref|YP_003404598.1| - 0.11 12.0 0.2 0.11 12.0 0.2 2.5 3 0 0 3 3 3 0 Archaeal 4TM region of histidine kinase Lipase_GDSL_2 PF13472.6 gi|284166319|ref|YP_003404598.1| - 0.37 11.2 4.0 0.18 12.2 0.4 2.2 2 1 0 3 3 3 0 GDSL-like Lipase/Acylhydrolase family Rhomboid PF01694.22 gi|284166323|ref|YP_003404602.1| - 2e-23 83.1 16.0 2e-23 83.1 16.0 1.6 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|284166323|ref|YP_003404602.1| - 0.00074 20.0 7.8 0.002 18.6 0.7 2.5 1 1 2 3 3 3 2 Eukaryotic integral membrane protein (DUF1751) Ribosomal_S10 PF00338.22 gi|284166324|ref|YP_003404603.1| - 1.3e-25 89.4 0.0 1.5e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|284166325|ref|YP_003404604.1| - 2.2e-56 190.5 0.1 2.6e-56 190.3 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|284166325|ref|YP_003404604.1| - 3.3e-37 127.2 0.0 8.4e-37 125.9 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|284166325|ref|YP_003404604.1| - 8.9e-16 58.0 2.4 3.7e-15 56.1 0.6 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|284166325|ref|YP_003404604.1| - 4.4e-07 30.0 0.0 2.8e-06 27.4 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase Gtr1_RagA PF04670.12 gi|284166325|ref|YP_003404604.1| - 0.002 17.5 0.0 0.068 12.5 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region RsgA_GTPase PF03193.16 gi|284166325|ref|YP_003404604.1| - 0.0027 17.6 1.0 0.21 11.5 0.2 2.3 1 1 1 2 2 2 1 RsgA GTPase Dynamin_N PF00350.23 gi|284166325|ref|YP_003404604.1| - 0.0092 16.0 0.0 3.8 7.5 0.0 2.4 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.10 gi|284166325|ref|YP_003404604.1| - 0.01 15.3 0.0 0.36 10.3 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.6 gi|284166325|ref|YP_003404604.1| - 0.013 15.3 0.3 0.044 13.7 0.3 1.9 1 0 0 1 1 1 0 Elongation factor Tu domain 4 FeoB_N PF02421.18 gi|284166325|ref|YP_003404604.1| - 0.021 14.4 0.0 0.36 10.4 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 gi|284166325|ref|YP_003404604.1| - 0.12 11.7 0.0 0.27 10.5 0.0 1.5 1 1 0 1 1 1 0 Septin NifU PF01106.17 gi|284166326|ref|YP_003404605.1| - 1.7e-09 37.7 0.2 2.4e-09 37.2 0.2 1.3 1 0 0 1 1 1 1 NifU-like domain FeS_assembly_P PF01883.19 gi|284166326|ref|YP_003404605.1| - 0.091 12.9 0.1 0.15 12.3 0.1 1.3 1 0 0 1 1 1 0 Iron-sulfur cluster assembly protein LVIVD PF08309.11 gi|284166327|ref|YP_003404606.1| - 5.5e-09 35.2 0.0 0.016 14.5 0.1 5.1 5 0 0 5 5 5 2 LVIVD repeat Beta_propel PF09826.9 gi|284166327|ref|YP_003404606.1| - 3e-05 23.1 0.0 0.63 8.8 0.0 4.2 3 1 1 5 5 5 3 Beta propeller domain SBP56 PF05694.11 gi|284166327|ref|YP_003404606.1| - 0.16 10.7 2.0 4.8 5.9 0.0 3.4 3 1 1 4 4 4 0 56kDa selenium binding protein (SBP56) ROK PF00480.20 gi|284166328|ref|YP_003404607.1| - 1.4e-45 156.0 0.0 1.7e-45 155.7 0.0 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|284166328|ref|YP_003404607.1| - 0.0056 16.2 3.1 0.0075 15.8 3.1 1.6 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|284166328|ref|YP_003404607.1| - 0.01 15.4 0.1 0.027 14.0 0.1 1.7 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain FtsA PF14450.6 gi|284166328|ref|YP_003404607.1| - 0.13 12.7 0.0 0.18 12.3 0.0 1.4 1 1 0 1 1 1 0 Cell division protein FtsA PipA PF07108.11 gi|284166329|ref|YP_003404608.1| - 0.058 12.9 0.3 0.22 11.0 0.0 1.9 2 1 0 2 2 2 0 PipA protein Usp PF00582.26 gi|284166330|ref|YP_003404609.1| - 8.9e-21 74.9 1.4 9.9e-21 74.7 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family HeH PF12949.7 gi|284166330|ref|YP_003404609.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 HeH/LEM domain adh_short_C2 PF13561.6 gi|284166331|ref|YP_003404610.1| - 7.3e-43 146.8 0.0 1.9e-42 145.5 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284166331|ref|YP_003404610.1| - 6.5e-38 130.2 0.0 7.8e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284166331|ref|YP_003404610.1| - 2.9e-05 24.0 0.0 3.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 KR domain MOSC PF03473.17 gi|284166332|ref|YP_003404611.1| - 1.5e-05 25.0 0.0 2.4e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 MOSC domain YqcI_YcgG PF08892.11 gi|284166333|ref|YP_003404612.1| - 6.1e-76 255.0 0.0 7e-76 254.7 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|284166334|ref|YP_003404613.1| - 6.7e-37 127.3 0.0 8.2e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 Isochorismatase family DUF1421 PF07223.11 gi|284166334|ref|YP_003404613.1| - 0.029 14.2 0.0 0.099 12.5 0.0 1.8 2 0 0 2 2 2 0 UBA-like domain (DUF1421) Catalase_C PF18011.1 gi|284166334|ref|YP_003404613.1| - 0.13 11.9 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 C-terminal domain found in long catalases CTP_transf_like PF01467.26 gi|284166335|ref|YP_003404614.1| - 2.6e-10 40.7 0.0 3.1e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Pantoate_ligase PF02569.15 gi|284166335|ref|YP_003404614.1| - 0.041 13.1 0.0 0.058 12.6 0.0 1.2 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase Tnp_22_trimer PF17489.2 gi|284166335|ref|YP_003404614.1| - 0.16 12.0 0.2 0.54 10.3 0.0 1.9 2 0 0 2 2 2 0 L1 transposable element trimerization domain Zip PF02535.22 gi|284166336|ref|YP_003404615.1| - 1.1e-14 54.4 21.3 6.9e-14 51.8 7.7 2.9 2 1 0 2 2 2 2 ZIP Zinc transporter MMPL PF03176.15 gi|284166337|ref|YP_003404616.1| - 2.1e-24 86.1 60.7 1.6e-15 56.9 28.1 3.8 3 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|284166337|ref|YP_003404616.1| - 0.00013 21.8 10.1 0.068 13.0 0.8 3.6 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation kleA_kleC PF17383.2 gi|284166337|ref|YP_003404616.1| - 0.00015 22.0 2.8 0.00015 22.0 2.8 2.4 3 0 0 3 3 3 1 Uncharacterized KorC regulated protein A Patched PF02460.18 gi|284166337|ref|YP_003404616.1| - 0.00024 19.3 21.1 0.00042 18.5 3.0 2.6 2 1 0 2 2 2 2 Patched family SecD_SecF PF02355.16 gi|284166337|ref|YP_003404616.1| - 0.00035 20.0 3.5 0.00035 20.0 3.5 2.5 2 0 0 2 2 2 1 Protein export membrane protein CdvA PF18822.1 gi|284166337|ref|YP_003404616.1| - 0.011 15.5 1.9 0.031 14.1 1.9 1.6 1 0 0 1 1 1 0 CdvA-like coiled-coil domain ZapB PF06005.12 gi|284166337|ref|YP_003404616.1| - 1.3 9.5 8.8 11 6.6 0.4 2.6 2 0 0 2 2 2 0 Cell division protein ZapB DivIC PF04977.15 gi|284166337|ref|YP_003404616.1| - 1.4 8.7 7.9 7.9 6.3 0.7 4.0 3 1 1 4 4 4 0 Septum formation initiator DASH_Spc19 PF08287.11 gi|284166337|ref|YP_003404616.1| - 4.7 7.1 8.3 2.6 7.9 5.0 2.2 1 1 0 2 2 2 0 Spc19 PGF-CTERM PF18204.1 gi|284166339|ref|YP_003404618.1| - 2.6e-07 30.4 0.8 2.6e-07 30.4 0.8 2.0 2 0 0 2 2 2 1 PGF-CTERM motif DAO PF01266.24 gi|284166340|ref|YP_003404619.1| - 6.3e-09 35.9 0.0 0.0022 17.6 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284166340|ref|YP_003404619.1| - 1.5e-08 34.3 0.1 7.9e-08 31.9 0.1 1.9 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|284166340|ref|YP_003404619.1| - 8.4e-08 31.7 0.0 6.8e-06 25.4 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|284166340|ref|YP_003404619.1| - 5.4e-07 28.8 0.0 0.003 16.5 0.0 2.4 3 0 0 3 3 3 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|284166340|ref|YP_003404619.1| - 4.1e-05 23.1 2.8 0.0019 17.6 2.0 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284166340|ref|YP_003404619.1| - 4.7e-05 22.8 0.1 8.9e-05 21.9 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284166340|ref|YP_003404619.1| - 0.00074 18.7 0.0 0.0017 17.5 0.0 1.5 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|284166340|ref|YP_003404619.1| - 0.0015 17.7 0.0 0.97 8.4 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|284166340|ref|YP_003404619.1| - 0.0035 16.1 0.0 0.013 14.2 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|284166340|ref|YP_003404619.1| - 0.0048 16.2 0.1 0.016 14.4 0.0 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|284166340|ref|YP_003404619.1| - 0.0096 16.1 0.1 0.029 14.6 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|284166340|ref|YP_003404619.1| - 0.06 12.6 0.0 0.087 12.1 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|284166340|ref|YP_003404619.1| - 0.11 12.7 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Usp PF00582.26 gi|284166341|ref|YP_003404620.1| - 3.1e-31 108.8 2.9 3.5e-31 108.6 2.9 1.0 1 0 0 1 1 1 1 Universal stress protein family NrfD PF03916.14 gi|284166342|ref|YP_003404621.1| - 7.1e-19 68.6 24.2 7.1e-19 68.6 24.2 1.8 2 0 0 2 2 2 1 Polysulphide reductase, NrfD VAPB_antitox PF02697.14 gi|284166343|ref|YP_003404622.1| - 6.4e-06 26.8 0.1 6.9e-06 26.8 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|284166343|ref|YP_003404622.1| - 0.0068 16.3 0.8 0.011 15.6 0.8 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family Cu-oxidase_3 PF07732.15 gi|284166346|ref|YP_003404625.1| - 9.9e-09 35.2 0.0 1.2e-07 31.8 0.0 2.2 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|284166346|ref|YP_003404625.1| - 1.1e-08 34.9 0.1 1.4e-06 28.1 0.0 2.9 2 1 0 2 2 2 2 Multicopper oxidase PSII_Pbs31 PF18240.1 gi|284166346|ref|YP_003404625.1| - 0.19 12.1 0.0 0.51 10.8 0.0 1.6 1 0 0 1 1 1 0 Photosystem II Psb31 protein Aminotran_5 PF00266.19 gi|284166347|ref|YP_003404626.1| - 2.1e-54 184.9 0.0 3.3e-54 184.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|284166347|ref|YP_003404626.1| - 0.0034 16.0 0.0 0.0049 15.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Usp PF00582.26 gi|284166348|ref|YP_003404627.1| - 1.7e-64 216.6 13.3 3.3e-31 108.7 3.4 3.0 2 1 0 2 2 2 2 Universal stress protein family Bac_thur_toxin PF01338.18 gi|284166348|ref|YP_003404627.1| - 0.024 14.1 0.0 0.053 13.0 0.0 1.5 2 0 0 2 2 2 0 Bacillus thuringiensis toxin FR47 PF08445.10 gi|284166348|ref|YP_003404627.1| - 0.083 12.9 0.6 14 5.7 0.0 2.5 2 0 0 2 2 2 0 FR47-like protein TMF_TATA_bd PF12325.8 gi|284166349|ref|YP_003404628.1| - 0.06 13.6 9.0 0.049 13.8 4.3 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Med10 PF09748.9 gi|284166349|ref|YP_003404628.1| - 0.075 13.0 0.0 0.55 10.2 0.0 2.0 2 0 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Pup PF05639.11 gi|284166349|ref|YP_003404628.1| - 3.8 8.5 9.4 1.5 9.8 0.3 2.8 2 1 0 2 2 2 0 Pup-like protein UvrA_inter PF17760.1 gi|284166350|ref|YP_003404629.1| - 1.3e-32 112.1 1.3 5.8e-32 110.0 0.1 2.7 3 0 0 3 3 2 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|284166350|ref|YP_003404629.1| - 1.6e-31 108.9 0.3 3.8e-29 101.2 0.1 3.3 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|284166350|ref|YP_003404629.1| - 3.2e-22 79.5 0.0 4e-12 46.8 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|284166350|ref|YP_003404629.1| - 3e-13 49.7 0.0 0.0036 16.8 0.0 4.2 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284166350|ref|YP_003404629.1| - 2e-09 37.0 0.0 0.00034 20.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|284166350|ref|YP_003404629.1| - 2e-07 31.6 0.0 0.025 14.9 0.0 3.1 3 0 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|284166350|ref|YP_003404629.1| - 2.5e-06 27.8 0.1 0.049 13.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain ATPase PF06745.13 gi|284166350|ref|YP_003404629.1| - 1.6e-05 24.4 0.3 0.011 15.0 0.0 2.9 4 0 0 4 4 3 1 KaiC AAA_23 PF13476.6 gi|284166350|ref|YP_003404629.1| - 1.7e-05 25.4 0.1 0.008 16.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|284166350|ref|YP_003404629.1| - 3.4e-05 23.7 0.1 0.43 10.2 0.0 4.1 4 0 0 4 4 4 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284166350|ref|YP_003404629.1| - 0.00014 21.8 0.0 0.65 9.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_14 PF13173.6 gi|284166350|ref|YP_003404629.1| - 0.00016 21.7 0.2 0.19 11.8 0.0 3.5 4 0 0 4 4 3 1 AAA domain DnaJ_CXXCXGXG PF00684.19 gi|284166350|ref|YP_003404629.1| - 0.00016 21.9 10.0 0.013 15.8 0.8 3.9 4 0 0 4 4 3 1 DnaJ central domain AAA_25 PF13481.6 gi|284166350|ref|YP_003404629.1| - 0.00032 20.3 0.0 0.95 9.0 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|284166350|ref|YP_003404629.1| - 0.00033 21.2 0.1 0.71 10.4 0.0 3.5 3 0 0 3 3 3 1 AAA domain AAA_21 PF13304.6 gi|284166350|ref|YP_003404629.1| - 0.00049 20.0 10.2 0.52 10.1 0.0 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|284166350|ref|YP_003404629.1| - 0.00067 19.8 0.1 1.6 8.9 0.0 3.8 4 1 0 4 4 4 1 AAA domain cobW PF02492.19 gi|284166350|ref|YP_003404629.1| - 0.00071 19.2 0.1 0.12 12.0 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.20 gi|284166350|ref|YP_003404629.1| - 0.0025 17.7 0.1 2.7 7.9 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase ATPase_2 PF01637.18 gi|284166350|ref|YP_003404629.1| - 0.0061 16.5 0.0 4.1 7.3 0.0 2.5 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|284166350|ref|YP_003404629.1| - 0.011 15.5 0.0 0.58 9.9 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|284166350|ref|YP_003404629.1| - 0.015 15.2 0.0 0.83 9.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|284166350|ref|YP_003404629.1| - 0.017 14.4 0.0 4.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Zn_Tnp_IS91 PF14319.6 gi|284166350|ref|YP_003404629.1| - 0.024 14.6 1.5 1.8 8.6 0.0 3.1 3 0 0 3 3 3 0 Transposase zinc-binding domain AAA_30 PF13604.6 gi|284166350|ref|YP_003404629.1| - 0.032 13.9 0.1 2.3 7.9 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_24 PF13479.6 gi|284166350|ref|YP_003404629.1| - 0.051 13.3 1.3 2.4 7.8 0.0 3.3 4 0 0 4 4 3 0 AAA domain RNA_helicase PF00910.22 gi|284166350|ref|YP_003404629.1| - 0.063 13.7 0.0 2.4 8.6 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Zn-ribbon_8 PF09723.10 gi|284166350|ref|YP_003404629.1| - 0.064 13.4 15.2 5.6 7.2 1.1 4.6 4 0 0 4 4 4 0 Zinc ribbon domain NB-ARC PF00931.22 gi|284166350|ref|YP_003404629.1| - 0.072 12.3 0.1 1.2 8.3 0.0 2.6 3 0 0 3 3 2 0 NB-ARC domain NMDAR2_C PF10565.9 gi|284166350|ref|YP_003404629.1| - 0.13 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus PRK PF00485.18 gi|284166350|ref|YP_003404629.1| - 0.15 11.8 0.1 2.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DZR PF12773.7 gi|284166350|ref|YP_003404629.1| - 0.53 10.3 8.5 4.8 7.3 0.4 3.9 4 0 0 4 4 4 0 Double zinc ribbon DUF87 PF01935.17 gi|284166350|ref|YP_003404629.1| - 1.2 9.2 0.0 1.2 9.2 0.0 2.9 4 0 0 4 4 3 0 Helicase HerA, central domain Anti-TRAP PF15777.5 gi|284166350|ref|YP_003404629.1| - 1.9 8.5 10.8 11 6.0 0.0 4.2 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein Acetyltransf_1 PF00583.25 gi|284166352|ref|YP_003404631.1| - 5.8e-15 55.6 0.0 9.3e-15 54.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284166352|ref|YP_003404631.1| - 7.3e-10 38.9 0.0 1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284166352|ref|YP_003404631.1| - 2e-08 34.5 0.0 3.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166352|ref|YP_003404631.1| - 2.3e-07 30.7 0.0 6e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|284166352|ref|YP_003404631.1| - 0.0025 18.5 0.1 0.0037 17.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166352|ref|YP_003404631.1| - 0.061 13.4 0.0 0.52 10.4 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain RNB PF00773.19 gi|284166353|ref|YP_003404632.1| - 4e-82 276.2 0.1 7.7e-81 271.9 0.1 2.1 1 1 0 1 1 1 1 RNB domain ADD_ATRX PF17981.1 gi|284166354|ref|YP_003404633.1| - 0.00048 20.0 0.5 0.024 14.5 0.1 2.1 2 0 0 2 2 2 2 Cysteine Rich ADD domain zf-C3HC PF07967.13 gi|284166354|ref|YP_003404633.1| - 0.0014 18.6 0.8 0.0017 18.4 0.8 1.0 1 0 0 1 1 1 1 C3HC zinc finger-like PUA PF01472.20 gi|284166355|ref|YP_003404634.1| - 1.3e-17 63.5 0.7 2e-17 62.9 0.7 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|284166355|ref|YP_003404634.1| - 0.0041 17.4 0.1 0.0064 16.7 0.1 1.2 1 0 0 1 1 1 1 UPF0113 PUA domain Beta-lactamase PF00144.24 gi|284166356|ref|YP_003404635.1| - 8e-73 245.5 1.8 9.2e-73 245.3 1.8 1.0 1 0 0 1 1 1 1 Beta-lactamase Rad21_Rec8 PF04824.16 gi|284166357|ref|YP_003404636.1| - 0.065 12.5 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein ODV-E18 PF10717.9 gi|284166357|ref|YP_003404636.1| - 0.14 12.1 1.4 0.16 11.9 1.4 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 MoeA_N PF03453.17 gi|284166358|ref|YP_003404637.1| - 4.7e-39 133.7 6.3 7.9e-39 132.9 6.3 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|284166358|ref|YP_003404637.1| - 1e-23 83.6 0.1 1.6e-23 82.9 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|284166358|ref|YP_003404637.1| - 9.1e-17 61.0 0.0 9.1e-17 61.0 0.0 3.5 4 0 0 4 4 4 1 MoeA C-terminal region (domain IV) HSP20 PF00011.21 gi|284166359|ref|YP_003404638.1| - 1e-11 44.9 0.0 1.2e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|284166359|ref|YP_003404638.1| - 0.0087 15.6 0.1 0.022 14.3 0.1 1.7 1 1 0 1 1 1 1 HSP20-like domain found in ArsA ABC1 PF03109.16 gi|284166360|ref|YP_003404639.1| - 2.8e-23 82.3 0.1 9.7e-17 61.2 0.0 2.7 3 0 0 3 3 3 2 ABC1 family APH PF01636.23 gi|284166360|ref|YP_003404639.1| - 9.9e-06 25.6 0.4 0.0033 17.4 0.1 3.3 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|284166360|ref|YP_003404639.1| - 0.0015 17.9 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain MR_MLE_C PF13378.6 gi|284166361|ref|YP_003404640.1| - 0.0046 16.6 0.0 0.0075 15.9 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like EFP_N PF08207.12 gi|284166362|ref|YP_003404641.1| - 7.6e-05 22.7 0.0 0.01 15.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|284166362|ref|YP_003404641.1| - 0.0073 16.3 0.5 0.013 15.5 0.5 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain eIF-5a PF01287.20 gi|284166362|ref|YP_003404641.1| - 0.013 15.6 1.3 0.023 14.8 1.3 1.5 1 0 0 1 1 1 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Arginase PF00491.21 gi|284166363|ref|YP_003404642.1| - 5.2e-56 190.2 0.1 6e-56 190.0 0.1 1.0 1 0 0 1 1 1 1 Arginase family COX1 PF00115.20 gi|284166364|ref|YP_003404643.1| - 1.4e-124 416.3 72.2 1.4e-124 416.3 72.2 3.1 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|284166364|ref|YP_003404643.1| - 6.6e-18 65.5 17.6 6.6e-18 65.5 17.6 3.4 3 1 0 3 3 3 1 Cytochrome c oxidase subunit III NIF3 PF01784.18 gi|284166365|ref|YP_003404644.1| - 1.4e-52 178.8 0.0 1.6e-52 178.6 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) DUF2977 PF11192.8 gi|284166367|ref|YP_003404646.1| - 0.095 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) TAT_signal PF10518.9 gi|284166367|ref|YP_003404646.1| - 0.19 11.6 3.9 0.48 10.4 3.9 1.7 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DS PF01916.17 gi|284166368|ref|YP_003404647.1| - 9.6e-99 330.3 0.0 1.1e-98 330.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Lactamase_B_2 PF12706.7 gi|284166370|ref|YP_003404649.1| - 4.2e-18 65.6 0.3 6.1e-18 65.1 0.3 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|284166370|ref|YP_003404649.1| - 1e-10 41.8 0.0 4.3e-10 39.7 0.0 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284166370|ref|YP_003404649.1| - 0.00021 21.3 7.7 0.00022 21.3 3.6 2.4 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Pyr_redox_2 PF07992.14 gi|284166371|ref|YP_003404650.1| - 8.5e-28 97.4 0.1 1.1e-27 97.0 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284166371|ref|YP_003404650.1| - 2e-15 56.8 0.0 2.7e-10 40.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284166371|ref|YP_003404650.1| - 7.1e-08 31.9 5.9 1.6e-05 24.2 0.5 3.1 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 gi|284166371|ref|YP_003404650.1| - 5.1e-06 26.3 11.1 3.7e-05 23.5 11.1 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284166371|ref|YP_003404650.1| - 3.9e-05 22.5 0.1 9.8e-05 21.2 0.1 1.6 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|284166371|ref|YP_003404650.1| - 5e-05 22.6 0.2 0.0001 21.5 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|284166371|ref|YP_003404650.1| - 8.6e-05 22.7 1.0 0.00017 21.8 0.2 2.0 2 1 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284166371|ref|YP_003404650.1| - 0.00052 19.5 0.3 0.00052 19.5 0.3 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|284166371|ref|YP_003404650.1| - 0.00096 18.4 0.0 0.033 13.3 0.0 2.1 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|284166371|ref|YP_003404650.1| - 0.0012 18.2 0.2 0.0022 17.3 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|284166371|ref|YP_003404650.1| - 0.0037 16.5 0.0 0.0073 15.6 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|284166371|ref|YP_003404650.1| - 0.006 17.1 0.2 0.027 15.0 0.4 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284166371|ref|YP_003404650.1| - 0.006 15.9 0.1 0.012 14.9 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain DJ-1_PfpI PF01965.24 gi|284166371|ref|YP_003404650.1| - 0.02 14.7 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family DUF3052 PF11253.8 gi|284166371|ref|YP_003404650.1| - 0.065 13.1 0.5 0.19 11.6 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) Putative_PNPOx PF01243.20 gi|284166372|ref|YP_003404651.1| - 4.9e-15 55.5 0.0 6.6e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|284166372|ref|YP_003404651.1| - 2.4e-13 50.3 0.5 2.8e-13 50.1 0.5 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|284166372|ref|YP_003404651.1| - 0.014 15.0 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like Gas_vesicle PF00741.18 gi|284166373|ref|YP_003404652.1| - 9.7e-17 60.8 6.7 1.3e-16 60.5 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein Glycos_transf_2 PF00535.26 gi|284166374|ref|YP_003404653.1| - 3.4e-26 92.1 0.0 4.7e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284166374|ref|YP_003404653.1| - 8.3e-12 45.5 0.0 2.2e-11 44.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|284166374|ref|YP_003404653.1| - 2.2e-07 30.5 0.0 3.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|284166374|ref|YP_003404653.1| - 9.8e-07 28.5 0.0 1.9e-05 24.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|284166374|ref|YP_003404653.1| - 4.8e-06 27.0 0.2 1.7e-05 25.2 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|284166374|ref|YP_003404653.1| - 3e-05 24.0 0.0 9.5e-05 22.4 0.0 1.8 2 1 0 2 2 2 1 Glycosyl transferase family group 2 SgrT PF15894.5 gi|284166374|ref|YP_003404653.1| - 0.1 12.6 0.0 0.25 11.4 0.0 1.6 2 0 0 2 2 2 0 Inhibitor of glucose uptake transporter SgrT HTH_IclR PF09339.10 gi|284166376|ref|YP_003404655.1| - 2.1e-05 24.2 0.0 4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284166376|ref|YP_003404655.1| - 4.8e-05 23.2 0.0 8.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|284166376|ref|YP_003404655.1| - 0.00034 20.5 0.0 0.00076 19.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284166376|ref|YP_003404655.1| - 0.00087 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284166376|ref|YP_003404655.1| - 0.0012 18.6 0.0 0.0025 17.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF1724 PF08350.10 gi|284166376|ref|YP_003404655.1| - 0.0024 18.0 0.0 0.0044 17.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_24 PF13412.6 gi|284166376|ref|YP_003404655.1| - 0.0034 16.9 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Dimerisation2 PF16864.5 gi|284166376|ref|YP_003404655.1| - 0.011 15.8 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain HTH_36 PF13730.6 gi|284166376|ref|YP_003404655.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|284166376|ref|YP_003404655.1| - 0.031 14.3 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DprA_WH PF17782.1 gi|284166376|ref|YP_003404655.1| - 0.047 13.8 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 DprA winged helix domain HTH_5 PF01022.20 gi|284166376|ref|YP_003404655.1| - 0.069 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|284166376|ref|YP_003404655.1| - 0.081 13.0 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|284166376|ref|YP_003404655.1| - 0.12 12.2 0.4 0.29 11.0 0.4 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF1330 PF07045.11 gi|284166377|ref|YP_003404656.1| - 3.6e-17 62.5 0.1 5.1e-17 62.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) TAT_signal PF10518.9 gi|284166377|ref|YP_003404656.1| - 0.13 12.1 3.1 0.22 11.4 3.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CBAH PF02275.18 gi|284166378|ref|YP_003404657.1| - 3.6e-47 161.5 0.0 5.3e-46 157.7 0.0 1.9 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family DHHA1 PF02272.19 gi|284166379|ref|YP_003404658.1| - 1.5e-16 61.1 0.0 3e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|284166379|ref|YP_003404658.1| - 3.8e-13 49.5 0.0 6.4e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 DHH family PMT_2 PF13231.6 gi|284166380|ref|YP_003404659.1| - 6.7e-26 91.4 6.7 6.7e-26 91.4 6.7 3.1 3 1 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_hydro_2_C PF02836.17 gi|284166381|ref|YP_003404660.1| - 9.3e-31 107.0 0.0 3.8e-30 105.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.21 gi|284166381|ref|YP_003404660.1| - 3.1e-22 79.3 0.0 8.5e-22 77.9 0.0 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.18 gi|284166381|ref|YP_003404660.1| - 2e-20 73.4 0.0 3.8e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain DUF4981 PF16353.5 gi|284166381|ref|YP_003404660.1| - 0.011 16.2 0.1 0.13 12.7 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function(DUF4981) Bgal_small_N PF02929.17 gi|284166381|ref|YP_003404660.1| - 0.026 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Beta galactosidase small chain BetaGal_dom4_5 PF13364.6 gi|284166381|ref|YP_003404660.1| - 0.052 14.1 0.0 0.17 12.5 0.0 1.8 1 0 0 1 1 1 0 Beta-galactosidase jelly roll domain MG2 PF01835.19 gi|284166381|ref|YP_003404660.1| - 0.081 13.4 0.0 19 5.8 0.0 2.8 2 0 0 2 2 2 0 MG2 domain AIM24 PF01987.17 gi|284166382|ref|YP_003404661.1| - 3e-26 92.5 0.1 3.6e-26 92.2 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Pea-VEAacid PF08111.11 gi|284166382|ref|YP_003404661.1| - 0.07 13.5 0.5 0.22 11.9 0.5 1.8 1 0 0 1 1 1 0 Pea-VEAacid family LTD PF00932.19 gi|284166382|ref|YP_003404661.1| - 0.12 12.7 0.2 0.19 12.1 0.2 1.6 1 1 0 1 1 1 0 Lamin Tail Domain Arylsulfotrans PF05935.11 gi|284166385|ref|YP_003404664.1| - 1.1e-17 64.0 5.7 6.9e-12 45.0 0.4 3.9 2 1 1 4 4 4 3 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|284166385|ref|YP_003404664.1| - 2.4e-12 46.8 2.1 8.4e-10 38.5 1.8 3.9 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) PQQ_2 PF13360.6 gi|284166385|ref|YP_003404664.1| - 2.2e-11 43.8 7.0 2.8e-05 23.8 0.1 3.2 2 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|284166385|ref|YP_003404664.1| - 4.2e-10 39.0 1.5 0.03 14.3 0.0 4.4 5 0 0 5 5 5 3 PQQ enzyme repeat RHS_repeat PF05593.14 gi|284166385|ref|YP_003404664.1| - 5e-05 23.7 0.9 2.4 8.8 0.0 5.4 5 1 0 5 5 5 1 RHS Repeat NHL PF01436.21 gi|284166385|ref|YP_003404664.1| - 0.00022 21.1 0.6 0.86 9.8 0.0 3.4 3 0 0 3 3 3 2 NHL repeat DUF389 PF04087.14 gi|284166386|ref|YP_003404665.1| - 4.1e-24 85.2 20.7 4.1e-24 85.2 20.7 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Ion_trans PF00520.31 gi|284166387|ref|YP_003404666.1| - 0.046 12.9 3.4 0.066 12.4 3.4 1.3 1 0 0 1 1 1 0 Ion transport protein YdjM PF04307.14 gi|284166388|ref|YP_003404667.1| - 5.8e-11 42.0 8.2 7.3e-11 41.7 8.2 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase HTH_10 PF04967.12 gi|284166389|ref|YP_003404668.1| - 1.7e-19 69.3 0.1 3.5e-19 68.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284166389|ref|YP_003404668.1| - 6.2e-06 25.8 0.7 6.3e-05 22.6 0.1 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284166389|ref|YP_003404668.1| - 0.00037 19.9 0.5 0.00083 18.8 0.5 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284166389|ref|YP_003404668.1| - 0.0033 16.9 0.1 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|284166389|ref|YP_003404668.1| - 0.0084 15.9 0.2 0.049 13.4 0.1 2.2 2 1 0 2 2 2 1 LexA DNA binding domain MarR_2 PF12802.7 gi|284166389|ref|YP_003404668.1| - 0.0097 15.8 0.1 0.089 12.7 0.1 2.5 2 0 0 2 2 2 1 MarR family GerE PF00196.19 gi|284166389|ref|YP_003404668.1| - 0.016 14.8 0.0 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.19 gi|284166389|ref|YP_003404668.1| - 0.017 15.3 0.0 0.047 13.9 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|284166389|ref|YP_003404668.1| - 0.038 13.9 0.1 0.19 11.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|284166389|ref|YP_003404668.1| - 0.039 13.8 0.2 0.091 12.6 0.2 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r3 PF04539.16 gi|284166389|ref|YP_003404668.1| - 0.075 13.1 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 Polysacc_synt_C PF14667.6 gi|284166390|ref|YP_003404669.1| - 0.2 11.7 5.9 0.099 12.7 3.4 1.6 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF998 PF06197.13 gi|284166390|ref|YP_003404669.1| - 1.4 8.5 22.0 13 5.3 21.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF3188 PF11384.8 gi|284166390|ref|YP_003404669.1| - 5.7 6.7 8.1 22 4.8 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) DUF4131 PF13567.6 gi|284166390|ref|YP_003404669.1| - 6 6.5 7.5 2.9 7.5 4.9 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) zf-C3HC4_2 PF13923.6 gi|284166391|ref|YP_003404670.1| - 5.6e-05 22.9 5.8 0.021 14.6 0.3 2.2 2 0 0 2 2 2 2 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 gi|284166391|ref|YP_003404670.1| - 0.00015 21.6 3.4 0.13 12.2 0.4 2.2 2 0 0 2 2 2 2 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|284166391|ref|YP_003404670.1| - 0.0012 18.8 11.3 0.12 12.5 11.3 2.2 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|284166391|ref|YP_003404670.1| - 0.012 15.6 7.4 0.42 10.6 0.7 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Di19 PF05605.12 gi|284166391|ref|YP_003404670.1| - 0.033 14.5 1.5 7.6 6.9 0.1 2.4 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-Mss51 PF13824.6 gi|284166391|ref|YP_003404670.1| - 0.074 13.2 11.4 0.6 10.3 0.3 3.3 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.7 gi|284166391|ref|YP_003404670.1| - 0.077 13.0 7.0 0.19 11.7 1.2 3.0 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-RING_2 PF13639.6 gi|284166391|ref|YP_003404670.1| - 0.092 13.1 4.3 4.7 7.6 0.2 2.3 2 0 0 2 2 2 0 Ring finger domain DUF35_N PF12172.8 gi|284166391|ref|YP_003404670.1| - 0.092 12.6 1.8 0.092 12.6 1.8 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|284166391|ref|YP_003404670.1| - 0.26 10.9 10.3 1.4 8.5 0.8 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_15 PF17032.5 gi|284166391|ref|YP_003404670.1| - 0.3 11.9 8.7 1.9 9.3 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon family zinc-ribbon_6 PF10005.9 gi|284166391|ref|YP_003404670.1| - 0.32 11.7 4.6 0.76 10.5 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain GFA PF04828.14 gi|284166391|ref|YP_003404670.1| - 0.34 11.3 6.5 8.4 6.8 0.4 2.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C2H2_3 PF13878.6 gi|284166391|ref|YP_003404670.1| - 0.34 10.8 12.6 0.6 10.0 0.3 2.8 2 1 1 3 3 3 0 zinc-finger of acetyl-transferase ESCO zf-CHCC PF10276.9 gi|284166391|ref|YP_003404670.1| - 1.7 8.8 10.8 6.3 6.9 0.7 3.3 3 0 0 3 3 3 0 Zinc-finger domain zf-RING_5 PF14634.6 gi|284166391|ref|YP_003404670.1| - 2 8.5 8.3 4.6 7.3 1.6 2.2 2 0 0 2 2 2 0 zinc-RING finger domain zf-ribbon_3 PF13248.6 gi|284166391|ref|YP_003404670.1| - 4.7 6.8 15.0 3.9 7.0 1.7 3.7 3 1 1 4 4 4 0 zinc-ribbon domain DAO PF01266.24 gi|284166392|ref|YP_003404671.1| - 7.3e-27 94.9 0.0 9.7e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.15 gi|284166392|ref|YP_003404671.1| - 3.8e-26 91.7 0.0 4.7e-25 88.1 0.0 1.9 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) Pyr_redox_3 PF13738.6 gi|284166392|ref|YP_003404671.1| - 3.6e-05 23.2 0.2 0.00044 19.6 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|284166392|ref|YP_003404671.1| - 5.3e-05 22.6 0.2 0.13 11.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|284166392|ref|YP_003404671.1| - 0.0015 18.5 0.1 0.62 10.0 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|284166392|ref|YP_003404671.1| - 0.0023 17.1 0.0 0.003 16.7 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|284166392|ref|YP_003404671.1| - 0.0024 16.6 0.2 0.02 13.6 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.24 gi|284166392|ref|YP_003404671.1| - 0.005 16.2 0.0 0.007 15.7 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|284166392|ref|YP_003404671.1| - 0.0057 16.9 0.4 0.054 13.7 0.0 2.8 4 0 0 4 4 4 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|284166392|ref|YP_003404671.1| - 0.013 14.8 0.2 3.4 6.8 0.1 2.4 2 0 0 2 2 2 0 Thi4 family TrkH PF02386.16 gi|284166393|ref|YP_003404672.1| - 1.2e-64 218.6 9.8 3e-64 217.3 9.8 1.5 1 1 0 1 1 1 1 Cation transport protein TssO PF17561.2 gi|284166393|ref|YP_003404672.1| - 0.22 11.6 0.4 0.41 10.7 0.4 1.4 1 0 0 1 1 1 0 Type VI secretion system, TssO ADK_lid PF05191.14 gi|284166394|ref|YP_003404673.1| - 0.024 14.6 0.3 0.028 14.4 0.3 1.2 1 0 0 1 1 1 0 Adenylate kinase, active site lid DUF4428 PF14471.6 gi|284166394|ref|YP_003404673.1| - 0.071 13.1 0.4 0.088 12.7 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) HTH_Crp_2 PF13545.6 gi|284166395|ref|YP_003404674.1| - 5.5e-05 23.1 0.4 0.00018 21.4 0.1 2.1 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|284166395|ref|YP_003404674.1| - 0.00019 21.3 1.4 0.00034 20.4 0.3 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|284166395|ref|YP_003404674.1| - 0.0014 18.5 0.0 0.0036 17.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Trp_repressor PF01371.19 gi|284166395|ref|YP_003404674.1| - 0.0022 18.1 0.0 0.0065 16.6 0.0 1.7 1 0 0 1 1 1 1 Trp repressor protein HTH_20 PF12840.7 gi|284166395|ref|YP_003404674.1| - 0.004 17.2 2.9 0.19 11.8 0.1 3.5 3 1 0 3 3 3 1 Helix-turn-helix domain Crp PF00325.20 gi|284166395|ref|YP_003404674.1| - 0.004 16.8 0.2 0.011 15.3 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_IclR PF09339.10 gi|284166395|ref|YP_003404674.1| - 0.0046 16.7 2.3 0.0065 16.2 0.1 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|284166395|ref|YP_003404674.1| - 0.0074 16.4 0.1 0.032 14.4 0.1 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|284166395|ref|YP_003404674.1| - 0.012 15.4 0.8 0.07 13.0 0.1 2.5 2 0 0 2 2 2 0 Homeodomain-like domain DUF1724 PF08350.10 gi|284166395|ref|YP_003404674.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) MarR PF01047.22 gi|284166395|ref|YP_003404674.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 gi|284166395|ref|YP_003404674.1| - 0.24 11.8 5.9 0.18 12.2 0.5 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain EamA PF00892.20 gi|284166396|ref|YP_003404675.1| - 3.6e-34 117.9 33.8 4.2e-20 72.3 7.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|284166396|ref|YP_003404675.1| - 0.01 15.9 6.4 1.1 9.3 0.2 2.5 2 1 0 2 2 2 2 Putative transmembrane family 234 eRF1_2 PF03464.15 gi|284166397|ref|YP_003404676.1| - 1.4e-23 83.7 0.0 2.1e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|284166397|ref|YP_003404676.1| - 1.8e-19 70.3 6.5 1.8e-19 70.3 6.5 1.8 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_3 PF03465.15 gi|284166397|ref|YP_003404676.1| - 5.3e-15 55.9 0.0 5.1e-14 52.7 0.0 2.5 2 1 0 2 2 2 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|284166397|ref|YP_003404676.1| - 1e-14 54.9 3.8 2.1e-14 54.0 3.8 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family12 PF18856.1 gi|284166397|ref|YP_003404676.1| - 0.00087 19.9 0.2 0.0049 17.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 Response_reg PF00072.24 gi|284166398|ref|YP_003404677.1| - 5.2e-17 62.0 0.2 6.1e-17 61.8 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PriCT_1 PF08708.11 gi|284166398|ref|YP_003404677.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) DUF373 PF04123.13 gi|284166398|ref|YP_003404677.1| - 0.061 12.8 0.4 0.14 11.5 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF373) DUF2171 PF09939.9 gi|284166399|ref|YP_003404678.1| - 1.7e-05 25.0 0.2 4.4e-05 23.7 0.2 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.16 gi|284166400|ref|YP_003404679.1| - 0.015 15.4 0.3 0.026 14.6 0.3 1.4 1 0 0 1 1 1 0 PRC-barrel domain DUF2171 PF09939.9 gi|284166400|ref|YP_003404679.1| - 0.16 12.3 4.5 0.6 10.4 4.5 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) DZR PF12773.7 gi|284166401|ref|YP_003404680.1| - 0.01 15.8 0.2 0.02 14.9 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon NMD3 PF04981.13 gi|284166401|ref|YP_003404680.1| - 0.019 14.5 0.2 0.024 14.1 0.2 1.2 1 0 0 1 1 1 0 NMD3 family PDR_CDR PF06422.12 gi|284166401|ref|YP_003404680.1| - 0.068 13.1 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 CDR ABC transporter zf-ribbon_3 PF13248.6 gi|284166401|ref|YP_003404680.1| - 0.92 9.0 5.4 3.3 7.2 1.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_4 PF12800.7 gi|284166401|ref|YP_003404680.1| - 1.1 10.0 4.5 2.3 8.9 1.1 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Abhydrolase_6 PF12697.7 gi|284166402|ref|YP_003404681.1| - 2.1e-23 84.1 0.3 2.5e-23 83.9 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284166402|ref|YP_003404681.1| - 1e-15 58.1 0.0 1.2e-12 48.0 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284166402|ref|YP_003404681.1| - 1.9e-13 50.2 0.1 1.8e-12 47.1 0.1 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 UPF0227 PF05728.12 gi|284166402|ref|YP_003404681.1| - 0.00028 20.9 0.0 0.00085 19.3 0.0 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Abhydrolase_5 PF12695.7 gi|284166402|ref|YP_003404681.1| - 0.0006 19.6 0.0 0.0061 16.3 0.0 2.2 2 1 0 2 2 2 1 Alpha/beta hydrolase family AAA_25 PF13481.6 gi|284166402|ref|YP_003404681.1| - 0.00099 18.7 0.0 0.36 10.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Ser_hydrolase PF06821.13 gi|284166402|ref|YP_003404681.1| - 0.0037 17.1 0.0 0.97 9.3 0.0 2.1 2 0 0 2 2 2 2 Serine hydrolase Ndr PF03096.14 gi|284166402|ref|YP_003404681.1| - 0.0039 15.9 0.0 0.0051 15.5 0.0 1.1 1 0 0 1 1 1 1 Ndr family Esterase PF00756.20 gi|284166402|ref|YP_003404681.1| - 0.0053 16.4 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative esterase PE-PPE PF08237.11 gi|284166402|ref|YP_003404681.1| - 0.065 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Thioesterase PF00975.20 gi|284166402|ref|YP_003404681.1| - 0.072 13.2 0.0 0.099 12.7 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain DUF2920 PF11144.8 gi|284166402|ref|YP_003404681.1| - 0.13 11.4 0.0 0.17 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) Virul_fac_BrkB PF03631.15 gi|284166403|ref|YP_003404682.1| - 1.6e-43 149.2 24.4 1.6e-43 149.2 24.4 1.9 2 0 0 2 2 2 1 Virulence factor BrkB CDC45 PF02724.14 gi|284166403|ref|YP_003404682.1| - 0.013 13.8 0.4 0.018 13.4 0.4 1.1 1 0 0 1 1 1 0 CDC45-like protein Vir_act_alpha_C PF10400.9 gi|284166403|ref|YP_003404682.1| - 0.02 15.6 1.3 0.095 13.4 1.3 2.1 1 1 0 1 1 1 0 Virulence activator alpha C-term MAD PF05557.13 gi|284166403|ref|YP_003404682.1| - 0.088 11.2 2.0 0.12 10.7 2.0 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein TAT_signal PF10518.9 gi|284166404|ref|YP_003404683.1| - 7.5e-07 28.7 2.8 7.5e-07 28.7 2.8 2.8 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Cu-oxidase_3 PF07732.15 gi|284166405|ref|YP_003404684.1| - 5.3e-24 84.5 2.2 2.4e-07 30.8 0.1 6.1 6 0 0 6 6 6 5 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|284166405|ref|YP_003404684.1| - 5e-11 42.5 18.4 2.8e-05 23.9 0.1 5.0 5 0 0 5 5 5 3 Multicopper oxidase FG-GAP PF01839.23 gi|284166405|ref|YP_003404684.1| - 0.00036 20.6 5.9 0.0015 18.6 3.0 2.9 2 0 0 2 2 2 1 FG-GAP repeat Zn_Tnp_IS1595 PF12760.7 gi|284166406|ref|YP_003404685.1| - 0.0002 21.2 0.3 0.54 10.3 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|284166406|ref|YP_003404685.1| - 0.17 12.6 3.9 2 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_3 PF13878.6 gi|284166406|ref|YP_003404685.1| - 0.85 9.5 3.3 9.8 6.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TRM PF02005.16 gi|284166407|ref|YP_003404686.1| - 7.9e-89 298.5 0.0 8.7e-89 298.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|284166407|ref|YP_003404686.1| - 6.9e-05 22.5 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|284166407|ref|YP_003404686.1| - 7e-05 22.4 0.1 0.0001 21.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|284166407|ref|YP_003404686.1| - 0.00049 20.7 0.1 0.0011 19.7 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166407|ref|YP_003404686.1| - 0.00069 19.4 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284166407|ref|YP_003404686.1| - 0.007 17.1 0.1 0.02 15.7 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Zn-ribbon_8 PF09723.10 gi|284166407|ref|YP_003404686.1| - 0.0072 16.4 2.5 0.012 15.7 1.8 1.8 2 0 0 2 2 1 1 Zinc ribbon domain UPF0020 PF01170.18 gi|284166407|ref|YP_003404686.1| - 0.024 14.3 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 HypA PF01155.19 gi|284166407|ref|YP_003404686.1| - 0.037 14.0 0.1 0.082 12.9 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Methyltransf_11 PF08241.12 gi|284166407|ref|YP_003404686.1| - 0.14 12.9 0.2 0.45 11.2 0.1 1.9 2 0 0 2 2 2 0 Methyltransferase domain Lar_restr_allev PF14354.6 gi|284166407|ref|YP_003404686.1| - 0.9 10.0 4.4 1.7 9.1 0.4 3.0 2 1 1 3 3 3 0 Restriction alleviation protein Lar GATase PF00117.28 gi|284166408|ref|YP_003404687.1| - 4.7e-21 75.4 0.0 6.9e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284166408|ref|YP_003404687.1| - 2.2e-07 30.9 0.1 1.5e-06 28.2 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 HATPase_c PF02518.26 gi|284166409|ref|YP_003404688.1| - 6.5e-28 97.5 0.0 1.4e-27 96.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|284166409|ref|YP_003404688.1| - 5.1e-12 45.7 1.2 1.2e-11 44.5 1.2 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|284166409|ref|YP_003404688.1| - 1.1e-10 41.4 0.3 3e-10 40.0 0.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Tektin PF03148.14 gi|284166409|ref|YP_003404688.1| - 0.00015 20.6 1.6 0.00024 20.0 1.6 1.2 1 0 0 1 1 1 1 Tektin family ApoLp-III PF07464.11 gi|284166409|ref|YP_003404688.1| - 0.023 14.8 0.2 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) HATPase_c_2 PF13581.6 gi|284166409|ref|YP_003404688.1| - 0.033 14.1 0.1 0.087 12.8 0.1 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain LOH1CR12 PF10158.9 gi|284166409|ref|YP_003404688.1| - 0.066 13.2 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Tumour suppressor protein GrpE PF01025.19 gi|284166409|ref|YP_003404688.1| - 0.095 12.4 0.8 0.17 11.5 0.8 1.3 1 0 0 1 1 1 0 GrpE CorA PF01544.18 gi|284166409|ref|YP_003404688.1| - 0.1 11.9 0.4 0.19 11.0 0.4 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein ABATE PF07336.11 gi|284166409|ref|YP_003404688.1| - 0.19 12.4 5.6 4 8.1 1.3 2.8 1 1 1 2 2 2 0 Putative stress-induced transcription regulator HATPase_c_3 PF13589.6 gi|284166409|ref|YP_003404688.1| - 0.21 11.4 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SlyX PF04102.12 gi|284166409|ref|YP_003404688.1| - 1.4 9.6 3.8 49 4.6 0.2 3.0 2 1 0 2 2 2 0 SlyX SWIM PF04434.17 gi|284166410|ref|YP_003404689.1| - 0.012 15.2 4.6 0.1 12.3 4.6 2.0 1 1 0 1 1 1 0 SWIM zinc finger Cdc6_C PF09079.11 gi|284166411|ref|YP_003404690.1| - 9.2e-20 70.4 0.2 4.1e-19 68.3 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284166411|ref|YP_003404690.1| - 5.1e-13 49.5 0.3 1.7e-12 47.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284166411|ref|YP_003404690.1| - 5.9e-09 36.5 2.2 9.5e-09 35.9 0.1 2.3 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284166411|ref|YP_003404690.1| - 8e-07 29.5 0.1 3.6e-06 27.4 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|284166411|ref|YP_003404690.1| - 3.6e-05 23.1 0.0 6.2e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.6 gi|284166411|ref|YP_003404690.1| - 7.7e-05 22.8 0.1 0.0024 18.0 0.0 2.5 3 0 0 3 3 2 1 Sigma-54 interaction domain TniB PF05621.11 gi|284166411|ref|YP_003404690.1| - 9.9e-05 21.8 0.0 0.00019 20.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|284166411|ref|YP_003404690.1| - 0.00015 21.5 0.0 0.0003 20.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|284166411|ref|YP_003404690.1| - 0.001 19.2 0.1 0.0019 18.3 0.1 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DEAD PF00270.29 gi|284166411|ref|YP_003404690.1| - 0.0016 18.2 1.4 0.084 12.6 1.4 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase ATPase_2 PF01637.18 gi|284166411|ref|YP_003404690.1| - 0.0026 17.7 0.3 0.007 16.3 0.0 1.7 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|284166411|ref|YP_003404690.1| - 0.0047 16.8 0.0 0.016 15.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain DUF87 PF01935.17 gi|284166411|ref|YP_003404690.1| - 0.0054 16.9 0.5 0.28 11.2 0.0 2.3 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|284166411|ref|YP_003404690.1| - 0.006 15.5 0.2 0.033 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.17 gi|284166411|ref|YP_003404690.1| - 0.012 15.3 0.0 0.04 13.7 0.0 1.8 1 1 0 1 1 1 0 IstB-like ATP binding protein KAP_NTPase PF07693.14 gi|284166411|ref|YP_003404690.1| - 0.018 14.3 0.0 0.06 12.6 0.0 1.7 1 1 1 2 2 2 0 KAP family P-loop domain ATPase PF06745.13 gi|284166411|ref|YP_003404690.1| - 0.021 14.2 0.1 0.047 13.0 0.1 1.6 1 1 0 1 1 1 0 KaiC AAA_5 PF07728.14 gi|284166411|ref|YP_003404690.1| - 0.026 14.5 0.5 0.22 11.5 0.5 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.18 gi|284166411|ref|YP_003404690.1| - 0.04 13.3 0.0 0.28 10.5 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_assoc_2 PF16193.5 gi|284166411|ref|YP_003404690.1| - 0.049 14.0 1.8 0.56 10.6 0.3 2.6 1 1 1 2 2 2 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|284166411|ref|YP_003404690.1| - 0.068 13.6 0.1 0.42 11.0 0.0 2.2 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.16 gi|284166411|ref|YP_003404690.1| - 0.1 12.0 0.0 10 5.5 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DUF2075 PF09848.9 gi|284166411|ref|YP_003404690.1| - 0.11 11.8 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|284166411|ref|YP_003404690.1| - 0.16 11.5 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region GATase PF00117.28 gi|284166412|ref|YP_003404691.1| - 1.7e-23 83.4 0.0 2.2e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|284166412|ref|YP_003404691.1| - 8.6e-10 38.5 0.0 1.3e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|284166412|ref|YP_003404691.1| - 2.8e-07 30.6 0.0 4.8e-07 29.8 0.0 1.3 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|284166412|ref|YP_003404691.1| - 0.00018 21.3 0.4 0.038 13.7 0.1 2.4 2 1 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|284166412|ref|YP_003404691.1| - 0.0017 18.2 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|284166412|ref|YP_003404691.1| - 0.14 11.2 0.0 0.52 9.4 0.0 2.0 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain UDG PF03167.19 gi|284166413|ref|YP_003404692.1| - 7.9e-37 126.6 0.0 9.7e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Epimerase_2 PF02350.19 gi|284166413|ref|YP_003404692.1| - 0.065 12.1 0.0 0.085 11.7 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase DUF99 PF01949.16 gi|284166414|ref|YP_003404693.1| - 2.3e-62 209.7 0.1 2.6e-62 209.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Lactamase_B PF00753.27 gi|284166416|ref|YP_003404695.1| - 3.2e-08 33.8 13.3 4.7e-06 26.8 13.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284166416|ref|YP_003404695.1| - 0.014 14.9 4.4 0.18 11.3 4.3 2.2 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Poly_export PF02563.16 gi|284166416|ref|YP_003404695.1| - 0.027 14.7 0.0 0.069 13.4 0.0 1.7 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein Lactamase_B_3 PF13483.6 gi|284166416|ref|YP_003404695.1| - 0.13 12.2 1.8 0.64 9.9 1.8 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Ribosomal_L40e PF01020.17 gi|284166417|ref|YP_003404696.1| - 5.7e-09 35.7 3.6 6.5e-09 35.6 3.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|284166417|ref|YP_003404696.1| - 0.00027 20.6 2.2 0.00035 20.2 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|284166417|ref|YP_003404696.1| - 0.0013 18.7 1.1 0.0015 18.5 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-CHY PF05495.12 gi|284166417|ref|YP_003404696.1| - 0.0031 18.0 0.5 0.0033 17.9 0.5 1.1 1 0 0 1 1 1 1 CHY zinc finger zf-ribbon_3 PF13248.6 gi|284166417|ref|YP_003404696.1| - 0.0099 15.3 2.2 0.012 15.0 2.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|284166417|ref|YP_003404696.1| - 0.017 14.8 6.6 0.033 13.8 6.6 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|284166417|ref|YP_003404696.1| - 0.17 12.1 4.9 0.27 11.4 4.9 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_10 PF10058.9 gi|284166417|ref|YP_003404696.1| - 1.1 9.1 6.0 37 4.2 6.0 2.1 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein OrfB_Zn_ribbon PF07282.11 gi|284166418|ref|YP_003404697.1| - 8.2e-23 80.1 3.6 2.2e-22 78.7 3.6 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|284166418|ref|YP_003404697.1| - 8.3e-07 29.3 0.5 2e-06 28.0 0.1 1.8 2 0 0 2 2 2 1 Probable transposase MHC_II_beta PF00969.19 gi|284166418|ref|YP_003404697.1| - 0.0045 17.1 1.4 0.08 13.1 0.0 3.1 3 0 0 3 3 3 1 Class II histocompatibility antigen, beta domain GreA_GreB_N PF03449.15 gi|284166418|ref|YP_003404697.1| - 5.2 7.3 6.5 9.6 6.4 0.8 3.0 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal Ribo_biogen_C PF04034.13 gi|284166419|ref|YP_003404698.1| - 4.1e-45 152.6 0.0 4.9e-45 152.3 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|284166419|ref|YP_003404698.1| - 7.9e-07 28.8 0.1 1.3e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI HTH_24 PF13412.6 gi|284166420|ref|YP_003404699.1| - 4.8e-12 45.2 0.3 9.9e-12 44.2 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284166420|ref|YP_003404699.1| - 4.2e-11 42.5 0.5 1.8e-10 40.5 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrkA_C PF02080.21 gi|284166420|ref|YP_003404699.1| - 1.5e-10 40.8 1.5 2e-10 40.3 0.4 1.9 2 0 0 2 2 2 1 TrkA-C domain HTH_11 PF08279.12 gi|284166420|ref|YP_003404699.1| - 1.2e-08 34.8 0.0 2.7e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|284166420|ref|YP_003404699.1| - 4.5e-05 23.1 0.0 0.00014 21.5 0.0 1.8 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|284166420|ref|YP_003404699.1| - 0.00014 21.5 0.0 0.00035 20.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 gi|284166420|ref|YP_003404699.1| - 0.00029 20.8 0.0 0.00098 19.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284166420|ref|YP_003404699.1| - 0.00037 20.3 0.1 0.001 18.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|284166420|ref|YP_003404699.1| - 0.0031 17.2 0.0 0.0073 16.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|284166420|ref|YP_003404699.1| - 0.0078 16.3 0.1 0.023 14.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284166420|ref|YP_003404699.1| - 0.0078 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|284166420|ref|YP_003404699.1| - 0.0096 15.9 0.0 0.031 14.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|284166420|ref|YP_003404699.1| - 0.015 15.6 0.0 0.038 14.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.11 gi|284166420|ref|YP_003404699.1| - 0.018 14.6 0.2 0.047 13.3 0.1 1.7 2 0 0 2 2 1 0 CodY helix-turn-helix domain HTH_38 PF13936.6 gi|284166420|ref|YP_003404699.1| - 0.018 14.8 3.4 0.018 14.8 0.1 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain MarR PF01047.22 gi|284166420|ref|YP_003404699.1| - 0.021 14.8 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|284166420|ref|YP_003404699.1| - 0.039 14.2 0.0 0.082 13.1 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|284166420|ref|YP_003404699.1| - 0.073 12.7 0.1 0.31 10.7 0.0 2.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|284166420|ref|YP_003404699.1| - 0.09 12.5 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_41 PF14502.6 gi|284166420|ref|YP_003404699.1| - 0.16 11.6 0.0 3 7.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF3042 PF11240.8 gi|284166421|ref|YP_003404700.1| - 0.096 12.7 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3042) SnoaL_2 PF12680.7 gi|284166422|ref|YP_003404701.1| - 4.5e-19 69.0 7.8 5.2e-19 68.8 7.8 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|284166422|ref|YP_003404701.1| - 7.1e-08 32.3 1.2 1.2e-07 31.6 1.2 1.3 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.6 gi|284166422|ref|YP_003404701.1| - 9.9e-07 29.1 1.5 1.2e-06 28.9 1.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.6 gi|284166422|ref|YP_003404701.1| - 8.5e-06 25.9 0.7 1e-05 25.7 0.7 1.1 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|284166422|ref|YP_003404701.1| - 0.00087 19.9 0.0 0.0011 19.6 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.6 gi|284166422|ref|YP_003404701.1| - 0.0016 18.7 0.1 0.0023 18.2 0.1 1.3 1 1 0 1 1 1 1 SnoaL-like domain HTH_27 PF13463.6 gi|284166422|ref|YP_003404701.1| - 0.041 14.4 0.0 0.068 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain NB PF04159.13 gi|284166423|ref|YP_003404702.1| - 0.14 12.2 0.1 0.17 11.9 0.1 1.3 1 1 0 1 1 1 0 NB glycoprotein Rhodanese PF00581.20 gi|284166424|ref|YP_003404703.1| - 5e-14 52.7 0.0 1e-13 51.7 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|284166424|ref|YP_003404703.1| - 1.4e-09 38.3 3.7 4e-09 36.7 3.7 1.8 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284166424|ref|YP_003404703.1| - 0.0058 16.2 0.4 0.014 14.9 0.4 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain SpoIIM PF01944.17 gi|284166425|ref|YP_003404704.1| - 3.3e-31 108.4 9.1 3.3e-31 108.4 9.1 3.5 2 1 0 3 3 3 2 Stage II sporulation protein M DUF2721 PF11026.8 gi|284166425|ref|YP_003404704.1| - 0.013 15.4 0.1 0.013 15.4 0.1 4.9 5 3 0 5 5 5 0 Protein of unknown function (DUF2721) CCB1 PF12046.8 gi|284166425|ref|YP_003404704.1| - 1.1 8.6 5.5 0.3 10.4 1.6 2.2 1 1 0 1 1 1 0 Cofactor assembly of complex C subunit B MFS_1 PF07690.16 gi|284166426|ref|YP_003404705.1| - 1.2e-11 44.2 61.1 6.9e-08 31.8 32.7 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily AstE_AspA PF04952.14 gi|284166427|ref|YP_003404706.1| - 8.3e-59 199.0 0.0 9.5e-59 198.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.25 gi|284166428|ref|YP_003404707.1| - 6.7e-57 193.1 1.0 7.7e-57 192.9 1.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Capsid_VP7 PF17071.5 gi|284166428|ref|YP_003404707.1| - 0.16 11.2 0.0 0.23 10.7 0.0 1.1 1 0 0 1 1 1 0 Outer capsid protein VP7 NUDIX PF00293.28 gi|284166429|ref|YP_003404708.1| - 2.2e-18 66.6 0.2 2.9e-18 66.2 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.6 gi|284166429|ref|YP_003404708.1| - 1.9e-06 27.7 2.5 1.9e-06 27.7 2.5 1.8 2 0 0 2 2 1 1 Nudix N-terminal DZR PF12773.7 gi|284166429|ref|YP_003404708.1| - 9.5e-05 22.3 1.4 0.00015 21.7 1.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|284166429|ref|YP_003404708.1| - 0.00044 19.5 2.6 0.0089 15.3 4.1 2.0 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|284166429|ref|YP_003404708.1| - 0.0019 17.5 2.0 0.51 9.8 0.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|284166429|ref|YP_003404708.1| - 0.011 15.4 1.4 0.31 10.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|284166429|ref|YP_003404708.1| - 0.038 14.0 1.6 0.038 14.0 1.6 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284166429|ref|YP_003404708.1| - 0.042 14.0 4.0 0.14 12.3 4.0 1.9 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|284166429|ref|YP_003404708.1| - 0.05 13.6 0.4 0.11 12.5 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|284166429|ref|YP_003404708.1| - 0.058 13.3 0.9 0.27 11.2 0.9 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit RNHCP PF12647.7 gi|284166429|ref|YP_003404708.1| - 0.091 12.7 1.3 0.17 11.9 1.3 1.5 1 0 0 1 1 1 0 RNHCP domain zf-NADH-PPase PF09297.11 gi|284166429|ref|YP_003404708.1| - 0.091 12.4 5.2 0.38 10.5 5.2 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.6 gi|284166429|ref|YP_003404708.1| - 0.12 13.1 3.9 1.6 9.5 0.2 2.5 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 GFA PF04828.14 gi|284166429|ref|YP_003404708.1| - 0.13 12.6 2.1 12 6.3 0.1 2.5 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DiS_P_DiS PF06750.13 gi|284166429|ref|YP_003404708.1| - 0.2 11.8 0.3 24 5.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain TF_Zn_Ribbon PF08271.12 gi|284166429|ref|YP_003404708.1| - 0.3 10.6 3.4 1.3 8.6 3.4 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|284166429|ref|YP_003404708.1| - 0.47 10.5 7.3 1.4 9.0 0.1 2.8 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.12 gi|284166429|ref|YP_003404708.1| - 1 9.6 4.6 0.94 9.7 1.8 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-IS66 PF13005.7 gi|284166429|ref|YP_003404708.1| - 1.3 9.5 5.7 2.4 8.7 2.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 tRNA-synt_1d PF00750.19 gi|284166430|ref|YP_003404709.1| - 2.9e-37 128.4 0.1 3.9e-37 128.0 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|284166430|ref|YP_003404709.1| - 1.3e-31 109.3 0.0 2.5e-30 105.1 0.0 2.6 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|284166430|ref|YP_003404709.1| - 1.2e-10 41.8 0.0 3.7e-10 40.2 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|284166430|ref|YP_003404709.1| - 0.034 13.1 0.0 0.24 10.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|284166430|ref|YP_003404709.1| - 0.077 12.3 0.0 0.21 10.9 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain SpoIIIAH PF12685.7 gi|284166431|ref|YP_003404710.1| - 0.017 14.9 7.7 0.022 14.6 7.7 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein Nop14 PF04147.12 gi|284166431|ref|YP_003404710.1| - 0.076 11.2 12.2 0.081 11.1 12.2 1.1 1 0 0 1 1 1 0 Nop14-like family CDC45 PF02724.14 gi|284166431|ref|YP_003404710.1| - 0.42 8.8 8.9 0.49 8.6 8.9 1.2 1 0 0 1 1 1 0 CDC45-like protein DUF2457 PF10446.9 gi|284166431|ref|YP_003404710.1| - 1.5 7.9 18.1 1.8 7.7 18.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) DUF4637 PF15470.6 gi|284166431|ref|YP_003404710.1| - 2.3 7.9 9.3 3.4 7.4 9.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4637) Herpes_LMP1 PF05297.11 gi|284166431|ref|YP_003404710.1| - 4.8 6.3 6.9 6.5 5.8 6.9 1.2 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) ParA PF10609.9 gi|284166432|ref|YP_003404711.1| - 1.1e-22 80.7 0.4 4.9e-12 45.8 0.6 2.9 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|284166432|ref|YP_003404711.1| - 4.6e-21 75.2 0.0 7.1e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284166432|ref|YP_003404711.1| - 5.4e-19 68.8 0.0 8e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|284166432|ref|YP_003404711.1| - 6.3e-14 52.0 0.0 1.1e-13 51.2 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|284166432|ref|YP_003404711.1| - 1.3e-12 47.7 0.0 6.6e-12 45.4 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|284166432|ref|YP_003404711.1| - 5e-09 35.8 0.4 1.6e-08 34.2 0.4 1.7 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|284166432|ref|YP_003404711.1| - 1.4e-06 27.8 0.6 3.1e-05 23.3 1.3 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|284166432|ref|YP_003404711.1| - 3e-05 23.9 0.7 0.0019 18.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|284166432|ref|YP_003404711.1| - 0.00016 21.0 0.3 0.00028 20.2 0.3 1.3 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|284166432|ref|YP_003404711.1| - 0.00017 21.5 0.2 0.00027 20.8 0.2 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|284166432|ref|YP_003404711.1| - 0.0013 17.8 2.0 0.0032 16.5 2.0 1.6 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|284166432|ref|YP_003404711.1| - 0.012 15.3 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|284166432|ref|YP_003404711.1| - 0.036 12.3 0.5 0.058 11.6 0.5 1.2 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_24 PF13479.6 gi|284166432|ref|YP_003404711.1| - 0.047 13.4 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|284166432|ref|YP_003404711.1| - 0.11 12.1 0.4 0.11 12.1 0.4 2.2 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|284166432|ref|YP_003404711.1| - 0.14 11.8 3.6 0.068 12.8 1.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain eRF1_2 PF03464.15 gi|284166433|ref|YP_003404712.1| - 2.5e-43 147.6 0.0 4.7e-43 146.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|284166433|ref|YP_003404712.1| - 2.7e-30 105.1 0.2 1.1e-29 103.2 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|284166433|ref|YP_003404712.1| - 3.4e-18 66.2 0.3 1.4e-17 64.2 0.0 2.2 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|284166433|ref|YP_003404712.1| - 5e-16 59.2 0.1 3.5e-15 56.5 0.0 2.3 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|284166433|ref|YP_003404712.1| - 2.2e-11 43.8 0.0 3.4e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 TF_Zn_Ribbon PF08271.12 gi|284166433|ref|YP_003404712.1| - 0.00013 21.4 3.0 0.00037 20.0 3.0 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding eIF-5_eIF-2B PF01873.17 gi|284166433|ref|YP_003404712.1| - 0.014 15.3 0.2 0.058 13.3 0.0 1.9 2 0 0 2 2 2 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.11 gi|284166433|ref|YP_003404712.1| - 0.043 13.7 1.7 0.098 12.6 1.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|284166433|ref|YP_003404712.1| - 0.076 12.6 2.8 2.9 7.6 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|284166433|ref|YP_003404712.1| - 0.11 12.3 2.4 7.8 6.4 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DUF2239 PF09998.9 gi|284166433|ref|YP_003404712.1| - 0.13 12.0 0.2 0.35 10.6 0.2 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2239) Lar_restr_allev PF14354.6 gi|284166433|ref|YP_003404712.1| - 0.16 12.4 0.8 0.33 11.4 0.8 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|284166433|ref|YP_003404712.1| - 0.29 11.2 1.5 0.77 9.8 1.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284166433|ref|YP_003404712.1| - 0.32 11.1 6.0 0.31 11.2 3.6 2.3 2 1 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|284166433|ref|YP_003404712.1| - 0.97 9.6 3.9 18 5.5 0.2 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.7 gi|284166433|ref|YP_003404712.1| - 1.1 9.7 4.8 23 5.5 0.2 3.1 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 YhfH PF14149.6 gi|284166433|ref|YP_003404712.1| - 1.6 8.8 4.7 4.5 7.3 0.1 2.8 3 0 0 3 3 3 0 YhfH-like protein CARDB PF07705.11 gi|284166434|ref|YP_003404713.1| - 2e-09 37.6 17.2 1.6e-05 25.1 1.4 3.5 2 1 0 3 3 3 2 CARDB 4HBT PF03061.22 gi|284166434|ref|YP_003404713.1| - 0.51 10.7 3.0 13 6.2 0.0 3.3 3 0 0 3 3 3 0 Thioesterase superfamily Ribosomal_L21p PF00829.21 gi|284166434|ref|YP_003404713.1| - 1.6 9.0 6.4 4.3 7.7 0.7 3.0 3 0 0 3 3 3 0 Ribosomal prokaryotic L21 protein PRC PF05239.16 gi|284166435|ref|YP_003404714.1| - 0.03 14.4 0.7 0.053 13.6 0.7 1.4 1 0 0 1 1 1 0 PRC-barrel domain HalOD1 PF18545.1 gi|284166437|ref|YP_003404716.1| - 2.7e-25 88.4 0.1 3.3e-25 88.1 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DNA_RNApol_7kD PF03604.13 gi|284166438|ref|YP_003404717.1| - 0.014 15.0 0.4 0.03 14.0 0.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|284166438|ref|YP_003404717.1| - 0.028 14.4 0.1 0.033 14.2 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|284166438|ref|YP_003404717.1| - 0.063 12.7 6.3 2.1 7.9 6.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-RanBP PF00641.18 gi|284166438|ref|YP_003404717.1| - 0.078 12.3 1.5 0.22 10.8 1.5 1.7 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|284166438|ref|YP_003404717.1| - 0.12 12.2 4.9 0.46 10.3 4.9 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Hexapep PF00132.24 gi|284166439|ref|YP_003404718.1| - 7.1e-06 25.6 7.1 0.011 15.5 0.3 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284166439|ref|YP_003404718.1| - 0.0026 17.5 2.7 0.84 9.4 0.2 2.8 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase Complex1_49kDa PF00346.19 gi|284166440|ref|YP_003404719.1| - 7.9e-83 277.7 0.0 1.7e-81 273.3 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|284166440|ref|YP_003404719.1| - 2e-34 118.8 0.2 3.7e-34 118.0 0.2 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Cons_hypoth698 PF03601.14 gi|284166442|ref|YP_003404721.1| - 4e-58 196.7 23.2 5e-58 196.4 23.2 1.0 1 0 0 1 1 1 1 Conserved hypothetical protein 698 DUF2417 PF10329.9 gi|284166442|ref|YP_003404721.1| - 1.1 8.6 3.4 2.5 7.5 3.4 1.5 1 0 0 1 1 1 0 Region of unknown function (DUF2417) PALP PF00291.25 gi|284166443|ref|YP_003404722.1| - 4.3e-46 157.6 1.0 5e-46 157.4 1.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TetR_C_15 PF17918.1 gi|284166443|ref|YP_003404722.1| - 0.064 14.0 0.3 2.7 8.8 0.0 3.0 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain HIT PF01230.23 gi|284166444|ref|YP_003404723.1| - 3.3e-17 63.0 0.1 4.1e-17 62.7 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|284166444|ref|YP_003404723.1| - 4.1e-09 36.9 0.0 5e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|284166444|ref|YP_003404723.1| - 0.0022 17.8 0.0 0.0027 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Glyco_transf_4 PF13439.6 gi|284166445|ref|YP_003404724.1| - 2.1e-18 66.9 1.7 3.1e-18 66.4 0.6 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284166445|ref|YP_003404724.1| - 6e-16 59.3 7.4 6e-16 59.3 7.4 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|284166445|ref|YP_003404724.1| - 6.6e-11 42.0 0.0 8.8e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166445|ref|YP_003404724.1| - 2e-09 38.0 0.0 3.5e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|284166445|ref|YP_003404724.1| - 0.07 13.2 0.0 0.45 10.5 0.0 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like Peptidase_S9 PF00326.21 gi|284166447|ref|YP_003404726.1| - 2.1e-46 158.0 0.0 3.3e-46 157.4 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|284166447|ref|YP_003404726.1| - 1.3e-12 47.9 0.0 3e-08 33.6 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|284166447|ref|YP_003404726.1| - 6.7e-12 45.6 0.1 1.3e-05 25.0 0.1 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|284166447|ref|YP_003404726.1| - 1.7e-11 44.1 0.1 4.8e-11 42.6 0.1 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|284166447|ref|YP_003404726.1| - 2.3e-08 33.6 0.1 0.00034 20.0 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PD40 PF07676.12 gi|284166447|ref|YP_003404726.1| - 5e-08 32.7 10.7 3.4e-05 23.7 0.0 6.1 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.15 gi|284166447|ref|YP_003404726.1| - 1.4e-05 24.1 0.1 2.4e-05 23.3 0.1 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.12 gi|284166447|ref|YP_003404726.1| - 0.0001 21.1 0.0 0.0031 16.3 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 gi|284166447|ref|YP_003404726.1| - 0.0007 19.5 0.0 0.024 14.5 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|284166447|ref|YP_003404726.1| - 0.001 19.0 0.0 0.025 14.5 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.21 gi|284166447|ref|YP_003404726.1| - 0.024 13.4 0.0 0.52 9.0 0.0 3.2 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Esterase PF00756.20 gi|284166447|ref|YP_003404726.1| - 0.029 14.0 0.1 0.17 11.5 0.0 2.3 3 0 0 3 3 3 0 Putative esterase Abhydrolase_2 PF02230.16 gi|284166447|ref|YP_003404726.1| - 0.033 14.0 0.0 3 7.6 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|284166447|ref|YP_003404726.1| - 0.037 14.1 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein PQQ PF01011.21 gi|284166447|ref|YP_003404726.1| - 0.068 13.1 0.7 39 4.4 0.0 3.7 4 0 0 4 4 4 0 PQQ enzyme repeat DUF829 PF05705.14 gi|284166447|ref|YP_003404726.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) Peptidase_S28 PF05577.12 gi|284166447|ref|YP_003404726.1| - 0.19 10.5 0.0 0.29 9.9 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 ABC_tran PF00005.27 gi|284166448|ref|YP_003404727.1| - 2.9e-26 92.6 0.0 5.4e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166448|ref|YP_003404727.1| - 1.7e-10 41.2 0.1 5.5e-07 29.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|284166448|ref|YP_003404727.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain Lum_binding PF00677.17 gi|284166448|ref|YP_003404727.1| - 0.0097 15.9 0.6 2 8.5 0.1 2.5 2 0 0 2 2 2 1 Lumazine binding domain RsgA_GTPase PF03193.16 gi|284166448|ref|YP_003404727.1| - 0.023 14.6 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|284166448|ref|YP_003404727.1| - 0.023 15.2 0.1 0.043 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|284166448|ref|YP_003404727.1| - 0.027 15.2 0.0 0.069 13.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|284166448|ref|YP_003404727.1| - 0.037 13.8 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|284166448|ref|YP_003404727.1| - 0.077 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SMC_N PF02463.19 gi|284166448|ref|YP_003404727.1| - 0.09 12.2 0.0 14 5.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP_bind_1 PF03029.17 gi|284166448|ref|YP_003404727.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane_2 PF12679.7 gi|284166449|ref|YP_003404728.1| - 1.4e-35 123.0 25.3 5e-34 117.9 25.3 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284166449|ref|YP_003404728.1| - 6e-16 58.9 12.5 8.2e-16 58.5 6.4 2.2 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284166449|ref|YP_003404728.1| - 7.9e-07 28.8 14.6 7.9e-07 28.8 14.6 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284166449|ref|YP_003404728.1| - 9.8e-07 28.2 20.1 9.8e-07 28.2 20.1 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|284166449|ref|YP_003404728.1| - 1.8e-06 27.6 14.0 1.8e-06 27.6 14.0 2.3 1 1 0 2 2 2 1 ABC-2 type transporter DUF2663 PF10864.8 gi|284166449|ref|YP_003404728.1| - 1.1 9.6 4.9 0.92 9.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2663) Fe-ADH_2 PF13685.6 gi|284166450|ref|YP_003404729.1| - 4.6e-61 206.7 3.8 5.6e-61 206.4 3.8 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|284166450|ref|YP_003404729.1| - 4.2e-20 71.9 7.0 2.1e-19 69.6 7.0 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|284166450|ref|YP_003404729.1| - 6.1e-09 35.4 0.1 1.4e-08 34.2 0.1 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase NBD_C PF17042.5 gi|284166450|ref|YP_003404729.1| - 0.027 15.0 0.1 0.063 13.8 0.0 1.6 2 0 0 2 2 2 0 Nucleotide-binding C-terminal domain Epimerase PF01370.21 gi|284166451|ref|YP_003404730.1| - 4.2e-34 118.1 0.1 7e-32 110.8 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284166451|ref|YP_003404730.1| - 2e-10 40.6 0.2 0.00017 21.1 0.0 2.4 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|284166451|ref|YP_003404730.1| - 8.4e-10 38.8 0.0 1.4e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|284166451|ref|YP_003404730.1| - 8.5e-09 34.8 0.0 4.1e-07 29.3 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284166451|ref|YP_003404730.1| - 3.2e-07 29.8 0.1 0.0019 17.3 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|284166451|ref|YP_003404730.1| - 9.4e-07 28.3 0.0 0.02 14.1 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NmrA PF05368.13 gi|284166451|ref|YP_003404730.1| - 0.0081 15.7 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|284166451|ref|YP_003404730.1| - 0.087 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase ATPase PF06745.13 gi|284166452|ref|YP_003404731.1| - 5.4e-14 52.1 0.0 1.1e-13 51.1 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|284166452|ref|YP_003404731.1| - 0.0027 17.3 0.1 0.006 16.2 0.1 1.5 1 1 0 1 1 1 1 AAA domain VATC PF18716.1 gi|284166452|ref|YP_003404731.1| - 0.0089 15.9 0.3 0.024 14.5 0.3 1.6 1 0 0 1 1 1 1 Vms1-associating treble clef domain zf-FCS PF06467.14 gi|284166452|ref|YP_003404731.1| - 0.64 10.0 2.5 1.8 8.6 2.5 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF123 PF01986.16 gi|284166455|ref|YP_003404734.1| - 2.1e-30 105.1 0.0 2.6e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 CMD PF02627.20 gi|284166456|ref|YP_003404735.1| - 1e-09 38.3 2.0 1.6e-08 34.5 0.1 2.6 3 0 0 3 3 3 2 Carboxymuconolactone decarboxylase family GATase_2 PF00310.21 gi|284166457|ref|YP_003404736.1| - 6.7e-156 519.2 0.0 1e-155 518.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|284166457|ref|YP_003404736.1| - 9.6e-151 502.1 0.2 2.4e-149 497.5 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|284166457|ref|YP_003404736.1| - 6.7e-116 386.6 0.0 1.2e-115 385.8 0.0 1.4 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.19 gi|284166457|ref|YP_003404736.1| - 1e-79 266.6 6.8 1.8e-79 265.8 6.8 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|284166457|ref|YP_003404736.1| - 0.0025 17.3 1.3 0.0044 16.5 1.3 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|284166457|ref|YP_003404736.1| - 0.033 13.2 7.1 0.023 13.7 4.3 2.0 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Metal_resist PF13801.6 gi|284166457|ref|YP_003404736.1| - 0.48 10.6 4.5 19 5.5 0.0 3.4 3 0 0 3 3 3 0 Heavy-metal resistance tRNA-synt_2b PF00587.25 gi|284166458|ref|YP_003404737.1| - 7.4e-22 78.2 0.0 1.4e-21 77.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|284166458|ref|YP_003404737.1| - 4.5e-20 71.6 0.1 1.2e-19 70.3 0.1 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.20 gi|284166458|ref|YP_003404737.1| - 2.4e-18 66.1 0.9 4.6e-18 65.1 0.9 1.5 1 0 0 1 1 1 1 Anticodon binding domain TIR_2 PF13676.6 gi|284166458|ref|YP_003404737.1| - 0.11 13.1 0.4 6.6 7.4 0.0 2.8 3 0 0 3 3 3 0 TIR domain Prominin PF05478.11 gi|284166458|ref|YP_003404737.1| - 0.33 8.8 0.1 0.46 8.4 0.1 1.1 1 0 0 1 1 1 0 Prominin Pup PF05639.11 gi|284166458|ref|YP_003404737.1| - 1.1 10.3 6.7 4 8.4 6.7 2.0 1 0 0 1 1 1 0 Pup-like protein Virul_fac_BrkB PF03631.15 gi|284166459|ref|YP_003404738.1| - 1.4e-46 159.2 30.4 1.7e-46 159.0 30.4 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF1616 PF07760.11 gi|284166459|ref|YP_003404738.1| - 2 7.7 8.2 4.8 6.5 8.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) ADH_zinc_N PF00107.26 gi|284166460|ref|YP_003404739.1| - 1.4e-30 106.0 0.1 2.5e-30 105.1 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284166460|ref|YP_003404739.1| - 5.3e-23 82.5 0.3 1.6e-22 80.9 0.1 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284166460|ref|YP_003404739.1| - 7.4e-12 45.1 0.2 1.9e-10 40.6 0.1 2.5 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|284166460|ref|YP_003404739.1| - 0.033 14.1 0.1 0.079 12.9 0.1 1.6 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase adh_short PF00106.25 gi|284166460|ref|YP_003404739.1| - 0.071 12.6 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase TAT_signal PF10518.9 gi|284166461|ref|YP_003404740.1| - 0.16 11.9 1.0 0.23 11.4 1.0 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NUDIX PF00293.28 gi|284166462|ref|YP_003404741.1| - 6.1e-15 55.4 2.8 9.1e-15 54.9 2.8 1.2 1 0 0 1 1 1 1 NUDIX domain EamA PF00892.20 gi|284166463|ref|YP_003404742.1| - 3.6e-09 36.9 17.2 4.3e-09 36.7 17.2 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|284166463|ref|YP_003404742.1| - 0.00054 19.2 7.4 0.00066 18.9 7.1 1.4 1 1 0 1 1 1 1 Magnesium transporter NIPA EamA PF00892.20 gi|284166464|ref|YP_003404743.1| - 2.6e-11 43.9 18.4 3.1e-11 43.6 18.4 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|284166464|ref|YP_003404743.1| - 0.0015 17.7 5.1 0.0015 17.7 5.1 1.8 1 1 0 2 2 2 1 Magnesium transporter NIPA UvrD-helicase PF00580.21 gi|284166465|ref|YP_003404744.1| - 1.5e-45 156.1 0.0 4e-45 154.7 0.0 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|284166465|ref|YP_003404744.1| - 2.4e-25 89.7 0.0 8.6e-14 51.7 0.0 2.5 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|284166465|ref|YP_003404744.1| - 7.8e-25 87.9 0.0 5e-24 85.3 0.0 2.4 3 1 0 3 3 3 1 AAA domain PDDEXK_1 PF12705.7 gi|284166465|ref|YP_003404744.1| - 1e-21 78.0 0.0 3.1e-21 76.4 0.0 1.9 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|284166465|ref|YP_003404744.1| - 2e-09 37.1 0.5 0.00027 20.7 0.0 4.0 4 0 0 4 4 4 2 UvrD-like helicase C-terminal domain AAA_12 PF13087.6 gi|284166465|ref|YP_003404744.1| - 1e-07 31.8 0.0 0.00041 20.0 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|284166465|ref|YP_003404744.1| - 7e-05 22.6 0.0 0.0003 20.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|284166465|ref|YP_003404744.1| - 0.0048 16.7 0.0 0.088 12.5 0.0 2.6 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase DUF2800 PF10926.8 gi|284166465|ref|YP_003404744.1| - 0.033 13.5 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) PDDEXK_1 PF12705.7 gi|284166466|ref|YP_003404745.1| - 0.00011 22.3 1.6 0.0074 16.2 0.1 2.4 2 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.6 gi|284166467|ref|YP_003404746.1| - 0.15 11.4 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain E1_dh PF00676.20 gi|284166467|ref|YP_003404746.1| - 0.25 10.2 0.4 0.44 9.4 0.4 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component CBS PF00571.28 gi|284166468|ref|YP_003404747.1| - 2.9e-28 98.1 7.9 2.2e-15 56.8 0.8 2.0 2 0 0 2 2 2 2 CBS domain HSP20 PF00011.21 gi|284166470|ref|YP_003404749.1| - 1.2e-13 51.0 0.0 2e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|284166470|ref|YP_003404749.1| - 2.5e-10 39.8 0.0 3.9e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA Flavi_glycop_C PF02832.16 gi|284166470|ref|YP_003404749.1| - 0.11 12.6 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 Flavivirus glycoprotein, immunoglobulin-like domain Pyr_redox_2 PF07992.14 gi|284166471|ref|YP_003404750.1| - 7.2e-33 114.1 0.0 1e-32 113.6 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|284166471|ref|YP_003404750.1| - 4.3e-10 39.8 0.1 8.5e-10 38.9 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|284166471|ref|YP_003404750.1| - 2.2e-09 37.8 0.3 4.2e-08 33.6 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|284166471|ref|YP_003404750.1| - 0.0016 18.4 1.8 0.055 13.5 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|284166471|ref|YP_003404750.1| - 0.087 11.9 0.0 5.2 6.0 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A PGF-CTERM PF18204.1 gi|284166473|ref|YP_003404752.1| - 0.0051 16.7 4.9 0.0051 16.7 4.9 2.1 2 0 0 2 2 2 1 PGF-CTERM motif DUF1269 PF06897.12 gi|284166473|ref|YP_003404752.1| - 0.36 11.1 5.8 7 7.0 1.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) PfkB PF00294.24 gi|284166474|ref|YP_003404753.1| - 2.1e-54 184.9 0.0 2.5e-54 184.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase NTP_transf_3 PF12804.7 gi|284166474|ref|YP_003404753.1| - 0.0097 16.3 0.0 0.028 14.8 0.0 1.7 1 1 0 2 2 2 1 MobA-like NTP transferase domain Phos_pyr_kin PF08543.12 gi|284166474|ref|YP_003404753.1| - 0.028 13.8 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase RTC PF01137.21 gi|284166475|ref|YP_003404754.1| - 2e-67 226.7 0.0 2.7e-67 226.2 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|284166475|ref|YP_003404754.1| - 3.7e-12 46.7 0.2 1.1e-11 45.2 0.2 1.8 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain DUF5337 PF17272.2 gi|284166476|ref|YP_003404755.1| - 0.0025 17.6 3.3 0.0031 17.3 3.3 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5337) Phage_holin_3_6 PF07332.11 gi|284166476|ref|YP_003404755.1| - 0.015 15.3 2.5 0.016 15.3 2.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SPC12 PF06645.13 gi|284166476|ref|YP_003404755.1| - 0.033 14.3 0.1 0.041 14.0 0.1 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Holin_SPP1 PF04688.13 gi|284166476|ref|YP_003404755.1| - 0.074 13.2 0.4 0.093 12.9 0.4 1.1 1 0 0 1 1 1 0 SPP1 phage holin MutL_C PF08676.11 gi|284166477|ref|YP_003404756.1| - 5e-37 126.9 0.0 7.5e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|284166477|ref|YP_003404756.1| - 9.4e-32 109.2 0.0 1.6e-31 108.4 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|284166477|ref|YP_003404756.1| - 1.2e-11 44.6 0.1 2.3e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|284166477|ref|YP_003404756.1| - 5.9e-05 23.5 0.0 0.00016 22.2 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SOG2 PF10428.9 gi|284166477|ref|YP_003404756.1| - 2.5 7.2 11.5 3.7 6.7 11.5 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein DHDPS PF00701.22 gi|284166478|ref|YP_003404757.1| - 2.1e-66 223.6 0.0 2.7e-66 223.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Virul_fac_BrkB PF03631.15 gi|284166479|ref|YP_003404758.1| - 3e-37 128.6 17.6 3.9e-37 128.3 17.6 1.1 1 0 0 1 1 1 1 Virulence factor BrkB DUF4407 PF14362.6 gi|284166479|ref|YP_003404758.1| - 0.017 14.5 2.0 0.035 13.5 2.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ABC2_membrane_3 PF12698.7 gi|284166479|ref|YP_003404758.1| - 5.9 5.9 14.6 20 4.2 14.7 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein PfkB PF00294.24 gi|284166480|ref|YP_003404759.1| - 3.7e-09 36.3 0.8 1.7e-06 27.6 1.6 2.2 2 0 0 2 2 2 2 pfkB family carbohydrate kinase PAS_9 PF13426.7 gi|284166481|ref|YP_003404760.1| - 1.5e-27 95.8 0.1 1.2e-22 80.1 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.10 gi|284166481|ref|YP_003404760.1| - 4.6e-17 62.3 8.0 4.4e-09 36.6 0.3 3.4 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|284166481|ref|YP_003404760.1| - 8.8e-14 51.5 0.0 1.6e-09 37.8 0.0 2.9 2 0 0 2 2 2 2 PAS fold GAF PF01590.26 gi|284166481|ref|YP_003404760.1| - 1.3e-13 51.7 0.4 1.8e-12 48.0 0.1 2.4 2 0 0 2 2 2 1 GAF domain HATPase_c PF02518.26 gi|284166481|ref|YP_003404760.1| - 7.3e-11 42.6 0.0 1.7e-10 41.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|284166481|ref|YP_003404760.1| - 2.8e-10 40.3 0.0 1.3e-09 38.2 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|284166481|ref|YP_003404760.1| - 5.8e-10 39.0 0.4 0.0017 18.3 0.0 3.8 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.7 gi|284166481|ref|YP_003404760.1| - 4e-08 33.4 0.3 9.9e-06 25.7 0.0 3.7 2 2 1 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|284166481|ref|YP_003404760.1| - 7.4e-07 29.2 1.2 2e-06 27.8 0.0 2.3 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|284166481|ref|YP_003404760.1| - 0.0098 15.5 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase GAF_3 PF13492.6 gi|284166481|ref|YP_003404760.1| - 0.032 14.6 0.0 0.069 13.5 0.0 1.6 1 0 0 1 1 1 0 GAF domain MutS_V PF00488.21 gi|284166482|ref|YP_003404761.1| - 1.7e-86 289.1 0.1 5.5e-86 287.4 0.0 2.0 2 0 0 2 2 2 1 MutS domain V MutS_III PF05192.18 gi|284166482|ref|YP_003404761.1| - 9.4e-37 127.1 4.4 1.7e-36 126.2 4.4 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|284166482|ref|YP_003404761.1| - 2.1e-27 95.6 0.0 4.8e-27 94.4 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|284166482|ref|YP_003404761.1| - 1.7e-26 92.4 1.6 3.8e-26 91.2 1.6 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|284166482|ref|YP_003404761.1| - 1.7e-18 67.2 0.0 7.7e-18 65.1 0.0 2.2 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.6 gi|284166482|ref|YP_003404761.1| - 0.085 12.9 0.1 0.29 11.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|284166482|ref|YP_003404761.1| - 1.7 9.1 0.0 1.7 9.1 0.0 2.9 2 1 0 2 2 2 0 AAA domain APG6_N PF17675.1 gi|284166482|ref|YP_003404761.1| - 8.8 6.9 14.1 0.036 14.6 4.1 2.2 3 0 0 3 3 3 0 Apg6 coiled-coil region Usp PF00582.26 gi|284166483|ref|YP_003404762.1| - 6.7e-06 26.7 3.1 6.7e-06 26.7 3.1 2.0 2 1 0 2 2 2 1 Universal stress protein family HalOD1 PF18545.1 gi|284166484|ref|YP_003404763.1| - 2.3e-13 50.2 2.3 3e-13 49.8 1.8 1.5 1 1 0 1 1 1 1 Halobacterial output domain 1 Usp PF00582.26 gi|284166485|ref|YP_003404764.1| - 3.2e-05 24.5 13.0 7.4e-05 23.3 3.9 2.8 1 1 0 2 2 2 2 Universal stress protein family NBD_C PF17042.5 gi|284166485|ref|YP_003404764.1| - 1.3 9.5 8.3 0.44 11.1 3.3 2.1 1 1 1 2 2 2 0 Nucleotide-binding C-terminal domain AA_permease_2 PF13520.6 gi|284166486|ref|YP_003404765.1| - 3e-45 154.8 35.7 3.6e-45 154.6 35.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|284166486|ref|YP_003404765.1| - 6.8e-39 133.8 34.5 8.6e-39 133.4 34.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|284166486|ref|YP_003404765.1| - 0.0076 16.3 1.7 0.0076 16.3 1.7 2.8 3 0 0 3 3 3 1 C-terminus of AA_permease Spore_permease PF03845.13 gi|284166486|ref|YP_003404765.1| - 2.3 7.0 14.9 0.46 9.2 0.2 2.8 3 0 0 3 3 3 0 Spore germination protein tRNA_bind PF01588.20 gi|284166487|ref|YP_003404766.1| - 6.4e-14 51.8 0.0 7.1e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3943 PF13084.6 gi|284166488|ref|YP_003404767.1| - 0.054 13.4 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) Bac_luciferase PF00296.20 gi|284166489|ref|YP_003404768.1| - 5.8e-65 219.8 2.2 1.2e-64 218.7 2.2 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase Phos_pyr_kin PF08543.12 gi|284166490|ref|YP_003404769.1| - 8.4e-84 280.8 3.4 1.3e-83 280.2 3.4 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|284166490|ref|YP_003404769.1| - 2.3e-57 193.2 0.5 4e-57 192.4 0.5 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|284166490|ref|YP_003404769.1| - 1.8e-09 37.3 1.3 3.1e-09 36.6 1.3 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HK PF02110.15 gi|284166490|ref|YP_003404769.1| - 0.087 12.2 1.6 0.43 9.9 1.5 2.0 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family AIRS_C PF02769.22 gi|284166491|ref|YP_003404770.1| - 4.8e-27 95.0 1.1 6.8e-27 94.5 1.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|284166491|ref|YP_003404770.1| - 2.6e-07 31.2 0.4 2.6e-07 31.2 0.4 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain MatE PF01554.18 gi|284166494|ref|YP_003404773.1| - 7.8e-47 158.9 20.8 2.7e-25 88.9 0.9 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|284166494|ref|YP_003404773.1| - 7.6e-11 42.3 8.4 7.6e-11 42.3 8.4 4.0 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|284166494|ref|YP_003404773.1| - 0.00089 18.0 7.0 0.00089 18.0 7.0 2.2 2 1 0 2 2 2 1 Lipid II flippase MurJ MoeA_N PF03453.17 gi|284166495|ref|YP_003404774.1| - 2.7e-38 131.2 3.8 5.1e-38 130.3 3.8 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|284166495|ref|YP_003404774.1| - 2.5e-24 85.6 0.0 9.1e-24 83.8 0.0 2.0 2 0 0 2 2 2 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|284166495|ref|YP_003404774.1| - 1.9e-23 82.6 0.3 1.5e-22 79.7 0.0 2.3 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.15 gi|284166495|ref|YP_003404774.1| - 4.9e-14 52.3 1.4 8.1e-14 51.6 0.1 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) HTH_10 PF04967.12 gi|284166496|ref|YP_003404775.1| - 2.9e-17 62.2 0.0 6.6e-17 61.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284166496|ref|YP_003404775.1| - 1.7e-07 31.3 6.3 2.7e-07 30.6 6.3 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_psq PF05225.16 gi|284166496|ref|YP_003404775.1| - 0.00031 20.4 0.0 0.00069 19.3 0.0 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_3 PF01381.22 gi|284166496|ref|YP_003404775.1| - 0.00032 20.7 0.0 0.00077 19.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|284166496|ref|YP_003404775.1| - 0.00061 19.3 0.0 0.0022 17.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AraC PF00165.23 gi|284166496|ref|YP_003404775.1| - 0.0029 17.7 0.0 0.0066 16.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.7 gi|284166496|ref|YP_003404775.1| - 0.0054 16.6 0.0 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|284166496|ref|YP_003404775.1| - 0.0064 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|284166496|ref|YP_003404775.1| - 0.0083 15.9 0.0 0.028 14.2 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|284166496|ref|YP_003404775.1| - 0.0085 15.6 2.0 0.0086 15.6 0.2 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|284166496|ref|YP_003404775.1| - 0.0092 16.0 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain TetR_N PF00440.23 gi|284166496|ref|YP_003404775.1| - 0.016 15.0 0.0 0.14 12.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family UPF0122 PF04297.14 gi|284166496|ref|YP_003404775.1| - 0.058 13.6 0.0 0.096 12.9 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4_2 PF08281.12 gi|284166496|ref|YP_003404775.1| - 0.15 11.7 0.3 2.2 8.1 0.3 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|284166496|ref|YP_003404775.1| - 0.18 12.0 0.0 0.5 10.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase GST_N_3 PF13417.6 gi|284166497|ref|YP_003404776.1| - 3.2e-11 43.5 0.0 4.5e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|284166497|ref|YP_003404776.1| - 0.00021 21.5 0.0 0.00028 21.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|284166497|ref|YP_003404776.1| - 0.002 18.3 0.0 0.0031 17.7 0.0 1.5 1 1 0 1 1 1 1 Glutaredoxin Bromo_TP_like PF17027.5 gi|284166497|ref|YP_003404776.1| - 0.082 13.1 0.0 0.1 12.8 0.0 1.3 1 1 0 1 1 1 0 Histone-fold protein HAD_2 PF13419.6 gi|284166499|ref|YP_003404778.1| - 1e-09 38.7 0.0 2.2e-09 37.7 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284166499|ref|YP_003404778.1| - 3e-06 27.7 0.0 0.00013 22.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284166499|ref|YP_003404778.1| - 0.0009 19.7 2.9 0.0043 17.5 2.9 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF86 PF01934.17 gi|284166499|ref|YP_003404778.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF86 DtxR PF18357.1 gi|284166501|ref|YP_003404780.1| - 0.11 12.2 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 Diphteria toxin repressor SH3 domain Pterin_4a PF01329.19 gi|284166502|ref|YP_003404781.1| - 1.9e-24 85.7 0.0 2.3e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Shikimate_DH PF01488.20 gi|284166504|ref|YP_003404783.1| - 4.1e-35 120.8 0.7 1e-34 119.6 0.2 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_N PF05201.15 gi|284166504|ref|YP_003404783.1| - 2e-33 115.2 0.1 5.2e-33 113.9 0.1 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|284166504|ref|YP_003404783.1| - 3.9e-22 78.5 1.7 8.6e-22 77.4 1.7 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain OCD_Mu_crystall PF02423.15 gi|284166504|ref|YP_003404783.1| - 2.4e-06 26.7 0.7 5e-06 25.7 0.7 1.5 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|284166504|ref|YP_003404783.1| - 4e-05 24.1 0.5 4e-05 24.1 0.5 2.5 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|284166504|ref|YP_003404783.1| - 0.00014 21.5 3.6 0.0003 20.3 1.8 2.3 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus NAD_binding_7 PF13241.6 gi|284166504|ref|YP_003404783.1| - 0.001 19.5 2.5 0.0013 19.2 0.7 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|284166504|ref|YP_003404783.1| - 0.0046 16.3 0.1 0.0089 15.4 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|284166504|ref|YP_003404783.1| - 0.0053 16.8 0.4 0.01 15.9 0.4 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EcoEI_R_C PF08463.10 gi|284166504|ref|YP_003404783.1| - 0.07 13.2 0.2 0.13 12.3 0.2 1.4 1 0 0 1 1 1 0 EcoEI R protein C-terminal GFO_IDH_MocA PF01408.22 gi|284166504|ref|YP_003404783.1| - 0.082 13.7 2.2 1.4 9.7 0.2 2.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|284166504|ref|YP_003404783.1| - 0.096 12.3 0.1 0.35 10.5 0.1 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|284166505|ref|YP_003404784.1| - 1.6e-27 96.0 0.1 1e-25 90.2 0.1 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding NAD_binding_3 PF03447.16 gi|284166505|ref|YP_003404784.1| - 0.00054 20.6 0.6 0.001 19.7 0.1 1.7 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Sirohm_synth_M PF14824.6 gi|284166505|ref|YP_003404784.1| - 0.00076 18.9 0.0 0.0023 17.3 0.0 1.9 2 0 0 2 2 2 1 Sirohaem biosynthesis protein central Sacchrp_dh_NADP PF03435.18 gi|284166505|ref|YP_003404784.1| - 0.0035 17.6 0.1 0.02 15.1 0.0 2.1 1 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|284166505|ref|YP_003404784.1| - 0.0062 16.8 1.7 0.067 13.5 1.7 2.3 1 1 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|284166505|ref|YP_003404784.1| - 0.044 13.1 0.0 0.21 10.9 0.0 2.1 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PcrB PF01884.17 gi|284166505|ref|YP_003404784.1| - 0.096 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 PcrB family AsnC_trans_reg2 PF17805.1 gi|284166506|ref|YP_003404785.1| - 7e-51 170.3 0.4 1.1e-24 86.4 0.0 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain DUF3006 PF11213.8 gi|284166506|ref|YP_003404785.1| - 0.071 13.3 0.6 1.4 9.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3006) Prenyltransf PF01255.19 gi|284166508|ref|YP_003404787.1| - 2.6e-66 223.4 0.0 3.3e-66 223.0 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF2067 PF09840.9 gi|284166508|ref|YP_003404787.1| - 0.11 12.0 0.0 2.1 7.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) PLN_propep PF16485.5 gi|284166509|ref|YP_003404788.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Protealysin propeptide Prenyltransf PF01255.19 gi|284166510|ref|YP_003404789.1| - 2.4e-24 86.1 0.0 4.9e-24 85.1 0.0 1.5 1 1 1 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|284166511|ref|YP_003404790.1| - 4e-49 167.2 17.6 4e-49 167.2 17.6 3.2 2 2 0 2 2 2 1 Integral membrane protein DUF92 SKG6 PF08693.10 gi|284166513|ref|YP_003404792.1| - 2 7.9 9.8 1.8 8.0 3.1 2.7 2 1 0 2 2 2 0 Transmembrane alpha-helix domain Toprim_4 PF13662.6 gi|284166514|ref|YP_003404793.1| - 5.5e-12 46.0 1.3 1.2e-11 44.9 0.2 2.2 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.6 gi|284166514|ref|YP_003404793.1| - 4.5e-06 27.0 0.0 1.5e-05 25.3 0.0 1.9 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|284166514|ref|YP_003404793.1| - 0.044 14.0 0.3 0.3 11.3 0.3 2.4 1 1 0 1 1 1 0 Toprim domain HTH_20 PF12840.7 gi|284166515|ref|YP_003404794.1| - 5.3e-16 58.4 0.1 1e-15 57.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284166515|ref|YP_003404794.1| - 0.00011 21.7 0.0 0.00022 20.7 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284166515|ref|YP_003404794.1| - 0.00016 21.5 0.0 0.00035 20.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|284166515|ref|YP_003404794.1| - 0.00042 20.1 0.0 0.00069 19.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284166515|ref|YP_003404794.1| - 0.0044 16.9 0.1 0.018 14.9 0.0 2.0 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|284166515|ref|YP_003404794.1| - 0.018 15.4 0.0 0.036 14.4 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein DUF2513 PF10711.9 gi|284166515|ref|YP_003404794.1| - 0.028 14.7 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_12 PF08461.10 gi|284166515|ref|YP_003404794.1| - 0.082 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain ArsR PF09824.9 gi|284166515|ref|YP_003404794.1| - 0.18 11.4 0.0 0.25 10.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF3311 PF11755.8 gi|284166516|ref|YP_003404795.1| - 1.5e-15 56.9 15.4 1.8e-15 56.6 15.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) TRAP-gamma PF07074.12 gi|284166516|ref|YP_003404795.1| - 0.11 12.0 0.3 0.14 11.7 0.3 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) SSF PF00474.17 gi|284166517|ref|YP_003404796.1| - 6.7e-44 150.4 29.6 8.9e-44 150.0 29.6 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family adh_short_C2 PF13561.6 gi|284166518|ref|YP_003404797.1| - 3.4e-44 151.2 0.0 5.6e-44 150.4 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284166518|ref|YP_003404797.1| - 9.7e-35 119.8 0.0 1.2e-34 119.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284166518|ref|YP_003404797.1| - 1.3e-08 34.9 0.0 1.9e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|284166518|ref|YP_003404797.1| - 0.051 13.5 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284166518|ref|YP_003404797.1| - 0.061 13.9 0.0 0.14 12.8 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent YjeF_N PF03853.15 gi|284166518|ref|YP_003404797.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 1 0 1 1 1 0 YjeF-related protein N-terminus Lum_binding PF00677.17 gi|284166519|ref|YP_003404798.1| - 1e-45 153.6 2.9 5e-23 80.9 0.1 2.0 2 0 0 2 2 2 2 Lumazine binding domain CysA_C_terminal PF17850.1 gi|284166519|ref|YP_003404798.1| - 1.4 9.5 4.5 10 6.8 0.1 3.3 3 0 0 3 3 3 0 CysA C-terminal regulatory domain DUF4131 PF13567.6 gi|284166520|ref|YP_003404799.1| - 0.011 15.3 0.0 0.013 15.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) LacY_symp PF01306.19 gi|284166520|ref|YP_003404799.1| - 0.015 14.1 0.1 0.017 13.9 0.1 1.0 1 0 0 1 1 1 0 LacY proton/sugar symporter DUF2717 PF10911.8 gi|284166520|ref|YP_003404799.1| - 0.037 13.7 0.1 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2717) NS3_envE PF02723.14 gi|284166520|ref|YP_003404799.1| - 0.15 12.2 1.7 0.26 11.4 1.0 1.7 2 0 0 2 2 2 0 Non-structural protein NS3/Small envelope protein E NhaB PF06450.12 gi|284166521|ref|YP_003404800.1| - 0.2 10.4 0.1 0.21 10.4 0.1 1.0 1 0 0 1 1 1 0 Bacterial Na+/H+ antiporter B (NhaB) UvrD-helicase PF00580.21 gi|284166523|ref|YP_003404802.1| - 2.1e-25 89.9 0.4 6.5e-12 45.6 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|284166523|ref|YP_003404802.1| - 2.5e-24 86.2 0.0 1.2e-23 84.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|284166523|ref|YP_003404802.1| - 8.2e-14 51.7 0.1 1.4e-08 34.5 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|284166523|ref|YP_003404802.1| - 9e-10 38.6 0.9 9.9e-06 25.4 0.0 3.1 3 0 0 3 3 3 2 AAA domain UvrD_C_2 PF13538.6 gi|284166523|ref|YP_003404802.1| - 2e-09 37.1 0.2 0.0033 17.2 0.0 2.8 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|284166523|ref|YP_003404802.1| - 1.7e-05 24.7 0.1 4.8 6.8 0.0 4.1 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|284166523|ref|YP_003404802.1| - 0.0002 21.6 0.3 0.33 11.2 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_11 PF13086.6 gi|284166523|ref|YP_003404802.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain Herpes_ori_bp PF02399.15 gi|284166523|ref|YP_003404802.1| - 0.0015 16.7 0.0 0.0024 16.0 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein DEAD PF00270.29 gi|284166523|ref|YP_003404802.1| - 0.0019 18.0 0.0 0.51 10.1 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|284166523|ref|YP_003404802.1| - 0.01 15.1 0.1 2 7.5 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_12 PF13087.6 gi|284166523|ref|YP_003404802.1| - 0.016 14.9 0.1 0.19 11.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|284166523|ref|YP_003404802.1| - 0.059 12.9 3.2 0.26 10.8 0.0 3.1 4 0 0 4 4 4 0 AAA domain AAA_17 PF13207.6 gi|284166523|ref|YP_003404802.1| - 0.55 10.7 2.2 2.3 8.7 1.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|284166523|ref|YP_003404802.1| - 1.6 9.0 5.7 1.3 9.4 0.6 3.0 1 1 2 3 3 3 0 AAA ATPase domain DZR PF12773.7 gi|284166524|ref|YP_003404803.1| - 0.0021 18.1 0.4 0.0028 17.6 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284166524|ref|YP_003404803.1| - 0.0071 16.4 1.7 0.013 15.6 1.7 1.4 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284166524|ref|YP_003404803.1| - 0.011 15.1 1.0 2 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.12 gi|284166524|ref|YP_003404803.1| - 0.015 15.0 2.5 0.18 11.6 0.2 2.3 2 0 0 2 2 2 0 HypF finger DUF4428 PF14471.6 gi|284166524|ref|YP_003404803.1| - 0.025 14.5 0.1 0.041 13.8 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) zinc_ribbon_2 PF13240.6 gi|284166524|ref|YP_003404803.1| - 0.026 14.2 3.3 1.3 8.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|284166524|ref|YP_003404803.1| - 0.33 10.7 3.8 4.4 7.1 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin_2 PF18073.1 gi|284166524|ref|YP_003404803.1| - 2.2 8.1 5.4 4.9 7.0 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain RecR PF02132.15 gi|284166524|ref|YP_003404803.1| - 7.3 6.2 8.2 26 4.5 8.2 1.8 1 1 0 1 1 1 0 RecR protein zf-ribbon_3 PF13248.6 gi|284166525|ref|YP_003404804.1| - 0.00044 19.6 3.2 0.00063 19.1 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|284166525|ref|YP_003404804.1| - 0.0017 18.3 0.5 0.0017 18.3 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|284166525|ref|YP_003404804.1| - 0.017 14.6 2.4 0.048 13.2 2.4 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|284166525|ref|YP_003404804.1| - 0.025 14.3 2.8 0.064 13.0 2.7 1.7 1 1 1 2 2 2 0 zinc-ribbon domain RecR PF02132.15 gi|284166525|ref|YP_003404804.1| - 0.055 13.0 0.9 0.082 12.5 0.9 1.2 1 0 0 1 1 1 0 RecR protein Zn-ribbon_8 PF09723.10 gi|284166525|ref|YP_003404804.1| - 0.063 13.4 4.2 0.17 12.0 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284166525|ref|YP_003404804.1| - 0.085 12.8 2.9 0.15 12.0 2.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|284166525|ref|YP_003404804.1| - 0.23 11.3 3.8 6.4 6.7 0.8 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF1610 PF07754.11 gi|284166525|ref|YP_003404804.1| - 0.61 10.1 5.9 3.7 7.6 0.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) YhfH PF14149.6 gi|284166525|ref|YP_003404804.1| - 4.4 7.4 9.2 90 3.2 8.6 2.1 1 1 1 2 2 2 0 YhfH-like protein ThiF PF00899.21 gi|284166526|ref|YP_003404805.1| - 1.1e-65 221.4 0.0 1.5e-65 221.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|284166526|ref|YP_003404805.1| - 0.012 15.9 0.3 0.048 13.9 0.3 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|284166526|ref|YP_003404805.1| - 0.016 15.3 0.1 0.038 14.0 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|284166526|ref|YP_003404805.1| - 0.14 12.6 0.6 2.6 8.5 0.6 2.2 1 1 0 1 1 1 0 Putative NAD(P)-binding Lar_restr_allev PF14354.6 gi|284166526|ref|YP_003404805.1| - 0.18 12.2 0.4 0.4 11.1 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar SNase PF00565.17 gi|284166527|ref|YP_003404806.1| - 0.18 12.3 0.0 0.37 11.3 0.0 1.5 1 0 0 1 1 1 0 Staphylococcal nuclease homologue PrsW-protease PF13367.6 gi|284166528|ref|YP_003404807.1| - 1.9e-44 151.5 17.8 1.9e-44 151.5 17.8 2.3 2 1 1 3 3 3 1 PrsW family intramembrane metalloprotease Cation_ATPase_C PF00689.21 gi|284166528|ref|YP_003404807.1| - 4.9 6.8 14.0 3.6 7.3 10.8 2.1 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus DUF1906 PF08924.11 gi|284166529|ref|YP_003404808.1| - 0.033 14.3 0.0 0.038 14.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DUF402 PF04167.13 gi|284166530|ref|YP_003404809.1| - 5.8e-16 58.4 1.0 1.3e-15 57.3 1.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF402) NUDIX PF00293.28 gi|284166531|ref|YP_003404810.1| - 3.5e-11 43.3 0.4 4.2e-11 43.0 0.4 1.1 1 0 0 1 1 1 1 NUDIX domain SBF PF01758.16 gi|284166532|ref|YP_003404811.1| - 7.2e-41 140.0 15.0 1.1e-40 139.4 15.0 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|284166532|ref|YP_003404811.1| - 5.5e-14 52.2 19.1 6.7e-14 51.9 19.1 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|284166532|ref|YP_003404811.1| - 0.0028 16.1 7.3 0.0028 16.1 7.3 1.8 2 1 0 2 2 2 1 Membrane transport protein DUF5357 PF17310.2 gi|284166532|ref|YP_003404811.1| - 1.3 7.5 6.4 2.4 6.6 6.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5357) Zn-ribbon_8 PF09723.10 gi|284166533|ref|YP_003404812.1| - 3.5e-07 30.2 0.9 4e-07 30.0 0.9 1.1 1 0 0 1 1 1 1 Zinc ribbon domain Sgf11 PF08209.11 gi|284166533|ref|YP_003404812.1| - 2.6e-05 23.7 1.1 0.064 12.8 0.1 2.1 2 0 0 2 2 2 2 Sgf11 (transcriptional regulation protein) Prok-RING_4 PF14447.6 gi|284166533|ref|YP_003404812.1| - 0.00036 20.3 0.6 0.13 12.2 0.0 2.0 2 0 0 2 2 2 2 Prokaryotic RING finger family 4 zf_UBZ PF18439.1 gi|284166533|ref|YP_003404812.1| - 0.0035 16.9 2.2 0.063 12.9 0.1 2.4 2 1 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|284166533|ref|YP_003404812.1| - 0.0072 16.3 0.5 0.011 15.7 0.5 1.3 1 1 0 1 1 1 1 Double zinc ribbon Rad50_zn_hook PF04423.14 gi|284166533|ref|YP_003404812.1| - 0.023 14.5 3.1 0.04 13.8 0.1 2.0 1 1 1 2 2 2 0 Rad50 zinc hook motif zf_Rg PF17915.1 gi|284166533|ref|YP_003404812.1| - 0.023 14.1 0.2 1.4 8.3 0.0 2.0 2 0 0 2 2 2 0 Reverse gyrase zinc finger Zn_ribbon_SprT PF17283.2 gi|284166533|ref|YP_003404812.1| - 0.027 14.3 1.6 0.66 9.9 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-Di19 PF05605.12 gi|284166533|ref|YP_003404812.1| - 0.032 14.5 2.0 2.4 8.5 2.0 2.1 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|284166533|ref|YP_003404812.1| - 0.032 14.7 2.0 3.8 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C3HC4_3 PF13920.6 gi|284166533|ref|YP_003404812.1| - 0.05 13.5 2.5 1.8 8.5 2.6 2.0 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) YacG PF03884.14 gi|284166533|ref|YP_003404812.1| - 0.065 13.0 1.3 6.7 6.5 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Nop10p PF04135.12 gi|284166533|ref|YP_003404812.1| - 0.071 13.2 1.3 2.1 8.5 1.6 2.0 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-C2H2_4 PF13894.6 gi|284166533|ref|YP_003404812.1| - 0.072 14.0 1.0 9.3 7.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|284166533|ref|YP_003404812.1| - 0.077 13.0 1.2 1.9 8.6 0.1 2.0 1 1 1 2 2 2 0 CpXC protein UPF0547 PF10571.9 gi|284166533|ref|YP_003404812.1| - 0.084 13.0 5.7 0.27 11.3 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|284166533|ref|YP_003404812.1| - 0.12 12.4 0.2 0.12 12.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|284166533|ref|YP_003404812.1| - 0.16 11.5 5.7 16 5.1 0.5 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding zf_C2H2_10 PF18414.1 gi|284166533|ref|YP_003404812.1| - 0.18 11.4 2.2 0.79 9.3 0.2 2.0 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-Mss51 PF13824.6 gi|284166533|ref|YP_003404812.1| - 0.42 10.8 3.5 9.2 6.4 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|284166533|ref|YP_003404812.1| - 0.56 10.7 2.7 5.7 7.6 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain DNA_ligase_ZBD PF03119.16 gi|284166533|ref|YP_003404812.1| - 0.66 10.1 6.6 1.6 8.8 1.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NAD_binding_10 PF13460.6 gi|284166534|ref|YP_003404813.1| - 2.9e-20 72.9 0.7 3.8e-20 72.5 0.7 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|284166534|ref|YP_003404813.1| - 7.3e-14 51.9 0.0 1.1e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|284166534|ref|YP_003404813.1| - 4.2e-11 42.8 0.0 6.6e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284166534|ref|YP_003404813.1| - 2.5e-07 30.0 0.0 3.3e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284166534|ref|YP_003404813.1| - 4.4e-07 29.3 0.1 2.4e-06 26.8 0.1 2.0 2 1 0 2 2 2 1 RmlD substrate binding domain KR PF08659.10 gi|284166534|ref|YP_003404813.1| - 0.035 14.0 0.0 0.071 13.0 0.0 1.5 1 1 0 1 1 1 0 KR domain DFP PF04127.15 gi|284166534|ref|YP_003404813.1| - 0.099 12.5 0.2 2.7 7.8 0.0 2.1 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein adh_short PF00106.25 gi|284166534|ref|YP_003404813.1| - 0.17 11.3 0.0 0.35 10.3 0.0 1.6 1 1 0 1 1 1 0 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|284166534|ref|YP_003404813.1| - 0.18 12.0 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Polysacc_synt_2 PF02719.15 gi|284166534|ref|YP_003404813.1| - 0.23 10.5 0.9 2.9 6.9 0.9 2.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|284166534|ref|YP_003404813.1| - 0.35 10.0 4.0 11 5.1 0.3 2.8 1 1 2 3 3 3 0 Male sterility protein HTH_20 PF12840.7 gi|284166536|ref|YP_003404815.1| - 5.5e-09 36.0 0.0 9.4e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284166536|ref|YP_003404815.1| - 2.3e-06 27.4 0.0 3.5e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284166536|ref|YP_003404815.1| - 5.6e-06 26.1 0.1 1e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|284166536|ref|YP_003404815.1| - 1.5e-05 24.8 0.0 2.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|284166536|ref|YP_003404815.1| - 1.7e-05 24.6 0.0 3.5e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284166536|ref|YP_003404815.1| - 0.00019 21.3 0.0 0.00029 20.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|284166536|ref|YP_003404815.1| - 0.00099 19.0 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_36 PF13730.6 gi|284166536|ref|YP_003404815.1| - 0.0013 18.6 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284166536|ref|YP_003404815.1| - 0.0014 18.1 0.1 0.0034 16.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|284166536|ref|YP_003404815.1| - 0.0041 17.6 0.0 0.0062 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|284166536|ref|YP_003404815.1| - 0.0081 16.1 0.2 0.05 13.6 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284166536|ref|YP_003404815.1| - 0.025 14.8 0.0 0.051 13.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|284166536|ref|YP_003404815.1| - 0.031 14.1 0.0 0.066 13.1 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|284166536|ref|YP_003404815.1| - 0.043 13.7 0.1 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_7 PF02796.15 gi|284166536|ref|YP_003404815.1| - 0.16 12.1 0.0 4.9 7.3 0.0 2.6 2 1 1 3 3 3 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.20 gi|284166536|ref|YP_003404815.1| - 0.17 12.3 0.0 0.36 11.2 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator MASE3 PF17159.4 gi|284166537|ref|YP_003404816.1| - 0.004 16.8 0.9 0.0047 16.6 0.9 1.1 1 0 0 1 1 1 1 Membrane-associated sensor domain Rax2 PF12768.7 gi|284166537|ref|YP_003404816.1| - 0.0057 16.1 0.5 0.0061 16.0 0.5 1.1 1 0 0 1 1 1 1 Cortical protein marker for cell polarity Aldo_ket_red PF00248.21 gi|284166539|ref|YP_003404818.1| - 1.5e-51 175.4 0.0 1.7e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PqqD PF05402.12 gi|284166539|ref|YP_003404818.1| - 0.053 13.8 0.3 0.22 11.9 0.3 2.1 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) AP_endonuc_2 PF01261.24 gi|284166539|ref|YP_003404818.1| - 0.073 12.5 0.0 0.16 11.4 0.0 1.6 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF4407 PF14362.6 gi|284166540|ref|YP_003404819.1| - 0.011 15.1 0.7 0.013 14.9 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CoA_binding_3 PF13727.6 gi|284166540|ref|YP_003404819.1| - 0.051 13.6 0.7 0.059 13.4 0.7 1.1 1 0 0 1 1 1 0 CoA-binding domain Pterin_bind PF00809.22 gi|284166542|ref|YP_003404821.1| - 1.4e-78 264.0 2.0 2.2e-78 263.3 2.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|284166542|ref|YP_003404821.1| - 7.4e-09 35.9 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|284166542|ref|YP_003404821.1| - 1.1e-08 35.3 0.0 5.2e-08 33.0 0.0 2.3 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain PCMT PF01135.19 gi|284166542|ref|YP_003404821.1| - 0.23 11.2 0.4 0.44 10.2 0.4 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Exo_endo_phos PF03372.23 gi|284166543|ref|YP_003404822.1| - 0.00011 21.8 0.1 0.0002 21.0 0.1 1.4 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Cupin_2 PF07883.11 gi|284166544|ref|YP_003404823.1| - 1.1e-10 41.0 0.5 1.6e-10 40.5 0.5 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284166544|ref|YP_003404823.1| - 0.001 19.0 0.0 0.0014 18.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|284166544|ref|YP_003404823.1| - 0.011 15.5 0.2 0.013 15.2 0.2 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_3 PF05899.12 gi|284166544|ref|YP_003404823.1| - 0.011 15.4 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DRTGG PF07085.12 gi|284166544|ref|YP_003404823.1| - 0.092 12.5 0.0 0.19 11.5 0.0 1.5 2 0 0 2 2 2 0 DRTGG domain ABC_tran PF00005.27 gi|284166545|ref|YP_003404824.1| - 1.2e-29 103.6 0.0 1.7e-29 103.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166545|ref|YP_003404824.1| - 2.5e-12 47.2 0.0 3e-08 33.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|284166545|ref|YP_003404824.1| - 0.0011 18.8 0.0 1.2 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|284166545|ref|YP_003404824.1| - 0.0067 16.9 0.0 0.014 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284166545|ref|YP_003404824.1| - 0.031 14.0 0.2 0.053 13.3 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284166545|ref|YP_003404824.1| - 0.033 13.9 0.3 0.07 12.8 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|284166545|ref|YP_003404824.1| - 0.1 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284166545|ref|YP_003404824.1| - 0.11 12.8 0.6 0.49 10.7 0.6 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|284166545|ref|YP_003404824.1| - 0.25 11.0 0.6 0.4 10.3 0.6 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PSII_BNR PF14870.6 gi|284166546|ref|YP_003404825.1| - 5.3e-05 22.6 4.2 0.0057 16.0 0.2 2.8 1 1 1 2 2 2 2 Photosynthesis system II assembly factor YCF48 UCR_Fe-S_N PF10399.9 gi|284166546|ref|YP_003404825.1| - 0.044 13.1 1.8 0.15 11.4 1.8 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF3148 PF11347.8 gi|284166546|ref|YP_003404825.1| - 0.15 11.8 1.1 12 5.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3148) Acetyltransf_1 PF00583.25 gi|284166548|ref|YP_003404827.1| - 4.5e-15 55.9 0.0 9.1e-15 54.9 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|284166548|ref|YP_003404827.1| - 1.2e-10 41.2 0.0 4.6e-10 39.3 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|284166548|ref|YP_003404827.1| - 3.8e-09 36.8 0.0 7e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284166548|ref|YP_003404827.1| - 1.1e-08 35.1 0.0 1.9e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284166548|ref|YP_003404827.1| - 1.8e-05 25.4 0.0 2.7e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166548|ref|YP_003404827.1| - 0.0002 21.4 0.0 0.00027 21.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284166548|ref|YP_003404827.1| - 0.00068 19.7 0.1 0.0019 18.3 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|284166548|ref|YP_003404827.1| - 0.0031 17.5 0.1 0.0071 16.3 0.0 1.6 2 0 0 2 2 2 1 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 gi|284166548|ref|YP_003404827.1| - 0.039 13.6 0.1 0.22 11.2 0.1 2.2 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284166548|ref|YP_003404827.1| - 0.045 13.9 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CDP-OH_P_transf PF01066.21 gi|284166549|ref|YP_003404828.1| - 7.7e-10 39.4 0.2 7.7e-10 39.4 0.2 2.7 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PHP_C PF13263.6 gi|284166550|ref|YP_003404829.1| - 6e-23 80.4 1.0 3.7e-22 77.8 0.6 2.3 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|284166550|ref|YP_003404829.1| - 6.6e-11 42.8 0.0 6.6e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 PHP domain YdjM PF04307.14 gi|284166551|ref|YP_003404830.1| - 0.0012 18.2 15.2 0.0012 18.2 15.2 2.9 1 1 0 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase FAM165 PF14981.6 gi|284166551|ref|YP_003404830.1| - 0.3 10.9 1.6 22 4.9 0.1 2.3 2 0 0 2 2 2 0 FAM165 family HTH_10 PF04967.12 gi|284166552|ref|YP_003404831.1| - 2.3e-17 62.5 0.1 4.8e-17 61.5 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|284166552|ref|YP_003404831.1| - 0.0019 18.1 0.6 0.0053 16.6 0.4 2.0 2 0 0 2 2 2 1 MarR family Hydantoinase_B PF02538.14 gi|284166552|ref|YP_003404831.1| - 0.0037 15.7 0.0 0.0039 15.7 0.0 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Sigma70_r4 PF04545.16 gi|284166552|ref|YP_003404831.1| - 0.018 14.6 0.1 0.12 11.9 0.0 2.3 2 1 0 2 2 2 0 Sigma-70, region 4 LacI PF00356.21 gi|284166552|ref|YP_003404831.1| - 0.16 11.7 0.4 0.3 10.9 0.4 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family BAT PF15915.5 gi|284166552|ref|YP_003404831.1| - 0.36 10.7 8.4 0.073 12.9 1.6 2.6 1 1 0 2 2 2 0 GAF and HTH_10 associated domain DUF4188 PF13826.6 gi|284166553|ref|YP_003404832.1| - 1.4e-40 138.3 0.0 1.7e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) Dehydratase_hem PF13816.6 gi|284166553|ref|YP_003404832.1| - 0.00028 20.4 0.0 0.00037 20.0 0.0 1.1 1 0 0 1 1 1 1 Haem-containing dehydratase CPSase_L_D2 PF02786.17 gi|284166554|ref|YP_003404833.1| - 4e-98 327.1 0.2 2.2e-57 194.0 0.0 2.6 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|284166554|ref|YP_003404833.1| - 1.2e-23 83.8 0.0 2.7e-23 82.6 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|284166554|ref|YP_003404833.1| - 5.5e-14 52.1 0.1 1.7e-09 37.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|284166554|ref|YP_003404833.1| - 1e-13 51.2 0.0 2.7e-06 27.2 0.0 2.9 3 0 0 3 3 3 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|284166554|ref|YP_003404833.1| - 8.9e-13 48.2 0.0 3.4e-09 36.5 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|284166554|ref|YP_003404833.1| - 3.8e-12 46.6 0.0 1.7e-06 28.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|284166554|ref|YP_003404833.1| - 0.03 13.8 0.0 0.075 12.5 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp domain AP_endonuc_2 PF01261.24 gi|284166554|ref|YP_003404833.1| - 0.052 13.0 0.0 0.22 10.9 0.0 2.1 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel PAS PF00989.25 gi|284166555|ref|YP_003404834.1| - 1.1e-15 57.6 0.1 3.1e-15 56.2 0.1 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|284166555|ref|YP_003404834.1| - 1.8e-13 50.9 0.0 4.6e-13 49.6 0.0 1.7 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|284166555|ref|YP_003404834.1| - 4.7e-13 49.3 0.0 1.3e-12 47.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|284166555|ref|YP_003404834.1| - 7.5e-12 45.5 3.1 8e-12 45.4 0.6 2.5 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|284166555|ref|YP_003404834.1| - 9.8e-12 44.7 0.5 9.8e-12 44.7 0.5 3.2 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|284166555|ref|YP_003404834.1| - 9.6e-11 42.1 2.6 1.2e-09 38.6 2.6 2.8 1 1 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|284166555|ref|YP_003404834.1| - 1.6e-06 27.9 0.0 3.1e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.7 gi|284166555|ref|YP_003404834.1| - 3.1e-06 27.1 0.1 1.1e-05 25.4 0.1 2.0 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.24 gi|284166555|ref|YP_003404834.1| - 4.7e-05 23.5 0.0 0.00013 22.1 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 gi|284166555|ref|YP_003404834.1| - 0.0002 21.3 0.8 0.00058 19.8 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GOLD_2 PF13897.6 gi|284166555|ref|YP_003404834.1| - 0.17 12.4 0.0 5.8 7.4 0.0 2.6 2 0 0 2 2 2 0 Golgi-dynamics membrane-trafficking Methyltransf_11 PF08241.12 gi|284166557|ref|YP_003404836.1| - 3.9e-09 37.0 0.0 6.6e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284166557|ref|YP_003404836.1| - 2e-07 31.6 0.0 4.9e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166557|ref|YP_003404836.1| - 3e-06 27.2 0.0 4.3e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284166557|ref|YP_003404836.1| - 0.00099 19.8 0.0 0.002 18.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166557|ref|YP_003404836.1| - 0.09 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Aldo_ket_red PF00248.21 gi|284166558|ref|YP_003404837.1| - 8.8e-22 77.6 0.0 1e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Ogr_Delta PF04606.12 gi|284166560|ref|YP_003404839.1| - 0.17 11.9 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger Pyr_redox_2 PF07992.14 gi|284166561|ref|YP_003404840.1| - 1.1e-47 162.7 0.2 1.4e-47 162.3 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284166561|ref|YP_003404840.1| - 2e-12 47.0 0.0 3.5e-10 39.6 0.0 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284166561|ref|YP_003404840.1| - 4.6e-11 43.1 0.5 2.5e-05 24.7 0.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|284166561|ref|YP_003404840.1| - 4.6e-09 36.1 0.0 1.4e-07 31.3 0.0 3.1 3 0 0 3 3 3 1 Rubredoxin NAD+ reductase C-terminal domain HI0933_like PF03486.14 gi|284166561|ref|YP_003404840.1| - 0.0018 17.1 0.0 0.029 13.1 0.0 2.5 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|284166561|ref|YP_003404840.1| - 0.0035 17.5 0.6 0.57 10.4 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|284166561|ref|YP_003404840.1| - 0.01 15.5 0.4 1 8.8 0.0 2.8 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|284166561|ref|YP_003404840.1| - 0.28 11.2 1.8 2.9 7.8 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding Polysacc_deac_1 PF01522.21 gi|284166563|ref|YP_003404842.1| - 2.4e-19 69.4 0.0 4.3e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|284166563|ref|YP_003404842.1| - 2.3e-05 24.1 0.0 4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Coprogen_oxidas PF01218.18 gi|284166563|ref|YP_003404842.1| - 0.019 13.7 0.0 0.035 12.8 0.0 1.3 1 0 0 1 1 1 0 Coproporphyrinogen III oxidase TAT_signal PF10518.9 gi|284166563|ref|YP_003404842.1| - 0.094 12.6 4.0 0.21 11.5 4.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MFS_1 PF07690.16 gi|284166564|ref|YP_003404843.1| - 1.3e-26 93.3 40.7 1.3e-26 93.3 40.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Peripla_BP_6 PF13458.6 gi|284166565|ref|YP_003404844.1| - 6.4e-36 124.7 2.2 8.6e-36 124.3 2.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|284166565|ref|YP_003404844.1| - 6.1e-19 68.3 0.0 1.7e-18 66.9 0.0 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|284166565|ref|YP_003404844.1| - 4.6e-09 35.7 0.1 0.0024 16.9 0.0 2.7 3 0 0 3 3 3 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|284166565|ref|YP_003404844.1| - 0.0049 16.7 1.0 0.01 15.7 0.0 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.21 gi|284166566|ref|YP_003404845.1| - 1.7e-30 106.1 30.9 1.7e-30 106.1 30.9 5.1 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|284166566|ref|YP_003404845.1| - 4.1e-08 33.5 16.8 6.5e-07 29.6 0.1 4.8 5 1 0 5 5 5 2 HAMP domain DUF948 PF06103.11 gi|284166566|ref|YP_003404845.1| - 2.2e-05 24.6 43.5 0.037 14.3 2.4 6.7 2 2 5 7 7 7 6 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|284166566|ref|YP_003404845.1| - 3.6e-05 23.8 46.8 0.0018 18.3 8.5 5.7 2 2 3 5 5 5 3 Laminin Domain II Spc7 PF08317.11 gi|284166566|ref|YP_003404845.1| - 0.1 11.5 53.1 0.013 14.4 11.7 4.5 1 1 3 4 4 4 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|284166566|ref|YP_003404845.1| - 0.12 12.5 37.0 0.038 14.0 4.3 5.8 1 1 4 6 6 6 0 Protein of unknown function (DUF1664) Syntaxin_2 PF14523.6 gi|284166566|ref|YP_003404845.1| - 0.22 11.9 16.4 1.2 9.5 2.0 4.9 1 1 1 3 3 3 0 Syntaxin-like protein Fib_alpha PF08702.10 gi|284166566|ref|YP_003404845.1| - 6.2 7.0 27.8 5.8 7.1 2.2 4.5 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family Mce4_CUP1 PF11887.8 gi|284166566|ref|YP_003404845.1| - 8.7 5.7 21.5 6.8 6.1 4.3 3.6 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Amino_oxidase PF01593.24 gi|284166567|ref|YP_003404846.1| - 7.7e-18 65.0 1.1 1.7e-16 60.6 1.1 2.6 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|284166567|ref|YP_003404846.1| - 1.5e-10 41.2 0.0 4.3e-10 39.7 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|284166567|ref|YP_003404846.1| - 0.00016 20.9 1.0 0.0054 15.9 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|284166567|ref|YP_003404846.1| - 0.00079 18.9 0.5 0.0017 17.8 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|284166567|ref|YP_003404846.1| - 0.0037 17.8 0.5 0.019 15.5 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284166567|ref|YP_003404846.1| - 0.0047 16.6 6.9 0.038 13.6 6.9 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|284166567|ref|YP_003404846.1| - 0.013 15.5 2.4 5.1 7.1 0.0 3.6 3 1 1 4 4 4 0 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|284166567|ref|YP_003404846.1| - 0.015 14.5 0.0 0.046 12.9 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284166567|ref|YP_003404846.1| - 0.19 10.4 0.3 1 8.0 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein Sporozoite_P67 PF05642.11 gi|284166567|ref|YP_003404846.1| - 4.7 5.2 5.4 6.9 4.6 5.4 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen GHMP_kinases_N PF00288.26 gi|284166568|ref|YP_003404847.1| - 8.9e-15 54.7 5.7 1e-14 54.5 3.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|284166568|ref|YP_003404847.1| - 9.2e-07 29.1 0.1 2.4e-06 27.8 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal MadL PF03817.13 gi|284166569|ref|YP_003404848.1| - 0.036 14.1 3.4 0.057 13.5 3.4 1.3 1 1 0 1 1 1 0 Malonate transporter MadL subunit ATP-synt_I PF03899.15 gi|284166569|ref|YP_003404848.1| - 0.095 13.1 11.4 0.23 11.8 4.2 2.1 2 0 0 2 2 2 0 ATP synthase I chain DUF2939 PF11159.8 gi|284166570|ref|YP_003404849.1| - 0.13 12.7 3.2 0.22 12.0 0.8 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2939) SOR_SNZ PF01680.17 gi|284166571|ref|YP_003404850.1| - 2.4e-102 341.1 9.6 2.9e-102 340.8 9.6 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|284166571|ref|YP_003404850.1| - 6.7e-09 35.4 5.3 7.1e-06 25.5 0.4 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|284166571|ref|YP_003404850.1| - 0.002 17.3 0.9 0.35 9.9 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|284166571|ref|YP_003404850.1| - 0.011 14.9 0.2 0.4 9.8 0.0 2.4 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|284166571|ref|YP_003404850.1| - 0.02 14.5 0.5 3.9 7.0 0.0 2.5 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MttA_Hcf106 PF02416.16 gi|284166571|ref|YP_003404850.1| - 0.077 12.3 2.6 0.78 9.1 0.1 2.8 3 0 0 3 3 3 0 mttA/Hcf106 family ADC PF06314.11 gi|284166572|ref|YP_003404851.1| - 1.3e-17 64.2 0.0 1.8e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) PQQ_2 PF13360.6 gi|284166573|ref|YP_003404852.1| - 2.3e-26 92.9 19.1 1.4e-18 67.3 7.7 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|284166573|ref|YP_003404852.1| - 1.8e-18 66.4 20.4 0.00084 19.8 0.1 7.3 7 0 0 7 7 7 6 PQQ-like domain PQQ PF01011.21 gi|284166573|ref|YP_003404852.1| - 5e-14 51.4 11.6 0.0061 16.4 0.1 6.5 6 0 0 6 6 6 5 PQQ enzyme repeat DUF4971 PF16341.5 gi|284166573|ref|YP_003404852.1| - 0.067 13.0 0.3 0.23 11.3 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4971) PQQ_2 PF13360.6 gi|284166574|ref|YP_003404853.1| - 2.3e-29 102.7 19.2 6.9e-20 71.6 14.7 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|284166574|ref|YP_003404853.1| - 7.2e-21 74.0 28.3 0.00045 20.6 0.4 7.5 6 0 0 6 6 6 6 PQQ-like domain PQQ PF01011.21 gi|284166574|ref|YP_003404853.1| - 1.6e-16 59.3 10.0 0.0021 17.9 0.0 6.3 6 0 0 6 6 6 5 PQQ enzyme repeat DUF1405 PF07187.11 gi|284166575|ref|YP_003404854.1| - 3.1e-48 163.7 13.9 3.9e-48 163.4 13.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) tRNA-synt_1 PF00133.22 gi|284166577|ref|YP_003404856.1| - 1e-125 420.4 0.3 1.7e-124 416.4 0.3 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|284166577|ref|YP_003404856.1| - 1.6e-34 119.1 0.1 3.9e-34 117.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|284166577|ref|YP_003404856.1| - 1.7e-21 76.5 0.3 5.7e-10 38.5 0.0 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|284166577|ref|YP_003404856.1| - 3.5e-06 26.7 0.0 9.6e-06 25.2 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|284166577|ref|YP_003404856.1| - 4.7e-05 22.9 0.0 0.0057 16.0 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.10 gi|284166577|ref|YP_003404856.1| - 0.0019 18.3 2.3 0.035 14.2 0.5 2.8 2 0 0 2 2 2 1 Zinc ribbon domain tRNA-synt_1f PF01921.18 gi|284166577|ref|YP_003404856.1| - 0.0055 15.7 0.0 0.016 14.1 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) SpecificRecomb PF10136.9 gi|284166577|ref|YP_003404856.1| - 0.098 10.9 0.0 0.14 10.4 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase HypA PF01155.19 gi|284166577|ref|YP_003404856.1| - 0.19 11.8 0.5 3 7.9 0.1 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4097 PF13349.6 gi|284166578|ref|YP_003404857.1| - 2.2e-08 33.8 4.8 3.5e-08 33.1 4.8 1.4 1 1 0 1 1 1 1 Putative adhesin FAF PF11250.8 gi|284166578|ref|YP_003404857.1| - 0.27 11.5 0.8 4.9 7.5 0.0 3.1 3 0 0 3 3 3 0 Fantastic Four meristem regulator FecR PF04773.13 gi|284166578|ref|YP_003404857.1| - 1.4 9.6 8.0 2.6 8.7 0.4 3.4 2 1 1 3 3 3 0 FecR protein MMPL PF03176.15 gi|284166580|ref|YP_003404859.1| - 5.5e-36 124.2 29.0 5.2e-21 74.9 16.9 2.6 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|284166580|ref|YP_003404859.1| - 3.1e-12 46.6 3.5 4.8e-06 26.5 0.4 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|284166580|ref|YP_003404859.1| - 1.6e-09 36.5 5.3 1.6e-09 36.5 5.3 2.2 2 0 0 2 2 2 2 Patched family ACR_tran PF00873.19 gi|284166580|ref|YP_003404859.1| - 0.18 9.4 12.6 0.61 7.7 7.0 2.1 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family Sulfatase PF00884.23 gi|284166582|ref|YP_003404861.1| - 9.2e-05 22.0 0.1 0.00012 21.6 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Metalloenzyme PF01676.18 gi|284166582|ref|YP_003404861.1| - 0.097 12.0 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily TFX_C PF14601.6 gi|284166584|ref|YP_003404863.1| - 8.3e-30 102.6 0.0 1.2e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|284166584|ref|YP_003404863.1| - 2.7e-08 33.2 0.2 5.2e-08 32.3 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.19 gi|284166584|ref|YP_003404863.1| - 8.4e-06 25.2 0.1 1.2e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_31 PF13560.6 gi|284166584|ref|YP_003404863.1| - 2.1e-05 24.8 2.9 3.9e-05 23.9 2.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|284166584|ref|YP_003404863.1| - 7.7e-05 22.6 0.0 0.00016 21.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|284166584|ref|YP_003404863.1| - 0.00024 21.1 0.1 0.00047 20.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|284166584|ref|YP_003404863.1| - 0.00063 19.4 0.1 0.0014 18.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|284166584|ref|YP_003404863.1| - 0.0012 18.6 0.1 0.0022 17.7 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|284166584|ref|YP_003404863.1| - 0.0023 17.8 0.3 0.0053 16.6 0.3 1.6 1 0 0 1 1 1 1 MarR family RepB PF07506.11 gi|284166584|ref|YP_003404863.1| - 0.0046 17.1 0.1 0.0071 16.4 0.1 1.3 1 0 0 1 1 1 1 RepB plasmid partitioning protein HTH_7 PF02796.15 gi|284166584|ref|YP_003404863.1| - 0.0052 16.8 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|284166584|ref|YP_003404863.1| - 0.0059 16.6 0.2 0.01 15.8 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|284166584|ref|YP_003404863.1| - 0.0096 15.7 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TAL_effector PF03377.13 gi|284166584|ref|YP_003404863.1| - 0.026 14.8 0.1 0.06 13.7 0.1 1.6 1 0 0 1 1 1 0 TAL effector repeat KORA PF16509.5 gi|284166584|ref|YP_003404863.1| - 0.026 14.8 0.1 0.044 14.1 0.1 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor KorB PF08535.10 gi|284166584|ref|YP_003404863.1| - 0.041 13.9 0.1 0.14 12.2 0.0 1.9 1 1 1 2 2 2 0 KorB domain HTH_24 PF13412.6 gi|284166584|ref|YP_003404863.1| - 0.048 13.2 0.1 0.092 12.3 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|284166584|ref|YP_003404863.1| - 0.054 13.5 0.1 0.079 12.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|284166584|ref|YP_003404863.1| - 0.062 13.3 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.7 gi|284166584|ref|YP_003404863.1| - 0.085 12.9 0.3 2.2 8.4 0.1 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|284166584|ref|YP_003404863.1| - 0.11 12.7 0.2 0.16 12.1 0.2 1.3 1 0 0 1 1 1 0 Trp repressor protein Crp PF00325.20 gi|284166584|ref|YP_003404863.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_28 PF13518.6 gi|284166584|ref|YP_003404863.1| - 0.13 12.4 0.1 0.27 11.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.27 gi|284166586|ref|YP_003404865.1| - 6.9e-25 88.2 1.8 1.3e-24 87.3 1.8 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284166586|ref|YP_003404865.1| - 3.2e-05 23.5 0.4 0.0018 17.9 0.4 2.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SecE PF00584.20 gi|284166587|ref|YP_003404866.1| - 0.71 9.8 4.2 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex TRAM PF01938.20 gi|284166588|ref|YP_003404867.1| - 2.8e-07 30.4 0.2 3.9e-07 30.0 0.2 1.2 1 0 0 1 1 1 1 TRAM domain TFB6 PF17110.5 gi|284166588|ref|YP_003404867.1| - 0.19 11.4 1.3 0.25 11.1 1.3 1.2 1 0 0 1 1 1 0 Subunit 11 of the general transcription factor TFIIH Sigma70_ner PF04546.13 gi|284166588|ref|YP_003404867.1| - 0.43 10.4 6.2 0.56 10.0 6.2 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region CDC45 PF02724.14 gi|284166588|ref|YP_003404867.1| - 0.47 8.7 4.2 0.51 8.6 4.2 1.0 1 0 0 1 1 1 0 CDC45-like protein Nop14 PF04147.12 gi|284166588|ref|YP_003404867.1| - 0.52 8.5 5.8 0.53 8.4 5.8 1.0 1 0 0 1 1 1 0 Nop14-like family ETF PF01012.21 gi|284166589|ref|YP_003404868.1| - 5.9e-39 133.8 2.2 8.2e-39 133.4 2.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|284166590|ref|YP_003404869.1| - 2.3e-36 123.7 0.1 4.8e-36 122.7 0.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|284166590|ref|YP_003404869.1| - 5.1e-30 104.7 1.2 7.4e-30 104.2 1.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain PBP_like PF12727.7 gi|284166590|ref|YP_003404869.1| - 0.0048 16.1 0.0 0.07 12.2 0.0 2.1 2 0 0 2 2 2 1 PBP superfamily domain Peripla_BP_6 PF13458.6 gi|284166591|ref|YP_003404870.1| - 7.4e-30 104.8 4.5 9.9e-30 104.3 4.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|284166591|ref|YP_003404870.1| - 3.7e-21 75.6 0.0 4.7e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region LppC PF04348.13 gi|284166591|ref|YP_003404870.1| - 0.00022 20.2 0.0 0.0003 19.7 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein MCPsignal PF00015.21 gi|284166592|ref|YP_003404871.1| - 2.5e-29 102.3 25.5 2.5e-29 102.3 25.5 4.8 2 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|284166592|ref|YP_003404871.1| - 8.6e-13 48.7 2.4 8.6e-13 48.7 2.4 4.0 3 2 1 4 4 4 1 Cache domain HAMP PF00672.25 gi|284166592|ref|YP_003404871.1| - 9.3e-12 45.1 16.5 3.3e-11 43.4 0.6 4.9 5 1 0 5 5 4 2 HAMP domain DUF948 PF06103.11 gi|284166592|ref|YP_003404871.1| - 0.0012 19.0 45.7 0.0078 16.4 5.4 6.8 3 2 3 7 7 7 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|284166592|ref|YP_003404871.1| - 0.0018 18.3 31.9 0.0051 16.8 3.0 5.7 3 2 2 5 5 5 2 Protein of unknown function (DUF1664) ERM PF00769.19 gi|284166592|ref|YP_003404871.1| - 0.0056 16.5 12.1 0.0056 16.5 12.1 3.6 3 1 0 3 3 2 1 Ezrin/radixin/moesin family Seryl_tRNA_N PF02403.22 gi|284166592|ref|YP_003404871.1| - 0.026 14.7 41.5 0.083 13.1 1.5 5.8 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain PET10 PF17316.2 gi|284166592|ref|YP_003404871.1| - 0.08 12.5 1.9 0.25 10.8 1.9 1.8 1 0 0 1 1 1 0 Petite colonies protein 10 Vip3A_N PF12495.8 gi|284166592|ref|YP_003404871.1| - 0.26 11.2 1.9 11 5.9 0.1 3.0 3 0 0 3 3 3 0 Vegetative insecticide protein 3A N terminal TruB_C PF09142.11 gi|284166592|ref|YP_003404871.1| - 0.47 10.3 3.6 2.4 8.0 0.1 3.2 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal IFT57 PF10498.9 gi|284166592|ref|YP_003404871.1| - 0.6 9.0 31.4 0.1 11.5 3.8 4.2 2 2 3 5 5 5 0 Intra-flagellar transport protein 57 BLOC1_2 PF10046.9 gi|284166592|ref|YP_003404871.1| - 1.2 9.5 37.3 0.096 13.0 4.2 6.3 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ING PF12998.7 gi|284166592|ref|YP_003404871.1| - 1.5 9.4 10.1 6.6 7.4 0.4 3.8 2 2 3 5 5 5 0 Inhibitor of growth proteins N-terminal histone-binding Baculo_F PF12259.8 gi|284166592|ref|YP_003404871.1| - 1.5 7.2 11.1 0.12 10.9 1.3 2.5 2 1 0 2 2 2 0 Baculovirus F protein Syntaxin_2 PF14523.6 gi|284166592|ref|YP_003404871.1| - 3.1 8.2 15.6 69 3.9 3.5 5.1 1 1 2 3 3 3 0 Syntaxin-like protein RecG_N PF17190.4 gi|284166592|ref|YP_003404871.1| - 5 7.9 4.7 11 6.8 0.1 3.4 3 0 0 3 3 3 0 RecG N-terminal helical domain Prominin PF05478.11 gi|284166592|ref|YP_003404871.1| - 6.5 4.6 18.9 0.5 8.3 4.3 3.0 2 1 1 3 3 3 0 Prominin Laminin_II PF06009.12 gi|284166592|ref|YP_003404871.1| - 7 6.7 48.9 0.8 9.7 2.9 5.7 3 2 2 5 5 5 0 Laminin Domain II polyprenyl_synt PF00348.17 gi|284166593|ref|YP_003404872.1| - 6.8e-53 179.3 0.0 8.2e-53 179.1 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.13 gi|284166594|ref|YP_003404873.1| - 3.6e-119 398.1 6.3 4.2e-119 397.9 6.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) EI24 PF07264.11 gi|284166594|ref|YP_003404873.1| - 4.1 7.6 10.3 99 3.1 10.3 2.2 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) PAS_4 PF08448.10 gi|284166595|ref|YP_003404874.1| - 6.8e-30 103.5 3.6 6.7e-15 55.3 0.4 2.9 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|284166595|ref|YP_003404874.1| - 7.5e-26 90.4 0.1 1.8e-16 60.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|284166595|ref|YP_003404874.1| - 1.1e-21 77.1 0.0 2.2e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|284166595|ref|YP_003404874.1| - 9.1e-21 74.1 0.1 2.4e-11 43.8 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|284166595|ref|YP_003404874.1| - 6e-17 61.3 0.1 2.6e-09 36.9 0.0 2.9 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|284166595|ref|YP_003404874.1| - 3.2e-12 46.3 0.1 3.2e-12 46.3 0.1 2.9 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|284166595|ref|YP_003404874.1| - 3.3e-12 46.6 3.1 1e-05 25.7 0.0 3.4 4 0 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|284166595|ref|YP_003404874.1| - 1.2e-07 32.2 0.0 1.1e-06 29.1 0.0 2.3 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|284166595|ref|YP_003404874.1| - 0.0072 16.9 0.1 0.26 11.9 0.0 2.7 2 1 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|284166595|ref|YP_003404874.1| - 0.041 14.1 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_5 PF14501.6 gi|284166595|ref|YP_003404874.1| - 0.078 12.9 0.0 25 4.9 0.0 3.2 3 0 0 3 3 3 0 GHKL domain DUF3872 PF12988.7 gi|284166595|ref|YP_003404874.1| - 0.16 11.8 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3872) Radical_SAM PF04055.21 gi|284166596|ref|YP_003404875.1| - 2.8e-05 24.6 4.5 0.0015 18.9 0.2 2.9 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|284166596|ref|YP_003404875.1| - 0.00092 19.3 0.1 0.0017 18.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TetR_C_1 PF02909.17 gi|284166596|ref|YP_003404875.1| - 0.13 12.1 0.3 4.1 7.2 0.1 2.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Fer4_12 PF13353.6 gi|284166596|ref|YP_003404875.1| - 0.14 12.4 0.1 0.4 10.9 0.1 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF2072 PF09845.9 gi|284166597|ref|YP_003404876.1| - 0.045 14.0 3.3 0.16 12.2 0.2 2.6 3 0 0 3 3 3 0 Zn-ribbon containing protein DUF3446 PF11928.8 gi|284166598|ref|YP_003404877.1| - 0.49 10.7 2.7 0.98 9.8 2.7 1.5 1 0 0 1 1 1 0 Early growth response N-terminal domain Spectrin PF00435.21 gi|284166599|ref|YP_003404878.1| - 0.019 15.4 0.9 0.053 14.0 0.5 1.9 1 1 1 2 2 2 0 Spectrin repeat BiPBP_C PF06832.12 gi|284166599|ref|YP_003404878.1| - 0.077 13.1 0.0 0.42 10.7 0.0 2.2 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family FUSC PF04632.12 gi|284166599|ref|YP_003404878.1| - 0.86 8.1 2.2 1.2 7.6 2.2 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family ABC_tran_CTD PF16326.5 gi|284166599|ref|YP_003404878.1| - 0.96 9.7 5.9 2.7 8.3 4.7 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain CarboxypepD_reg PF13620.6 gi|284166600|ref|YP_003404879.1| - 7.2e-44 148.0 47.8 3.1e-14 53.0 6.7 6.4 5 0 0 5 5 5 5 Carboxypeptidase regulatory-like domain Peptidase_S8 PF00082.22 gi|284166600|ref|YP_003404879.1| - 1.1e-40 139.8 13.9 1.1e-40 139.8 13.9 2.4 2 1 0 2 2 1 1 Subtilase family CarbopepD_reg_2 PF13715.6 gi|284166600|ref|YP_003404879.1| - 2.8e-24 84.9 16.4 2.6e-09 36.9 0.9 5.4 3 2 2 5 5 5 5 CarboxypepD_reg-like domain Big_1 PF02369.16 gi|284166600|ref|YP_003404879.1| - 4.4e-12 45.8 30.6 2.9e-08 33.6 5.3 6.2 5 0 0 5 5 5 3 Bacterial Ig-like domain (group 1) PEGA PF08308.11 gi|284166600|ref|YP_003404879.1| - 1.6e-06 27.9 4.2 0.97 9.4 0.0 5.7 5 0 0 5 5 5 2 PEGA domain Invasin_D3 PF09134.10 gi|284166600|ref|YP_003404879.1| - 2.1e-06 28.0 46.6 0.0011 19.2 7.9 7.0 5 2 1 6 6 5 4 Invasin, domain 3 DUF2012 PF09430.10 gi|284166600|ref|YP_003404879.1| - 5.3e-06 26.5 0.0 0.02 15.0 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF2012) MG4 PF17789.1 gi|284166600|ref|YP_003404879.1| - 1.3e-05 25.2 5.4 0.0041 17.2 0.3 4.1 4 0 0 4 4 4 1 Macroglobulin domain MG4 DUF824 PF05688.11 gi|284166600|ref|YP_003404879.1| - 6.3e-05 22.7 9.7 0.11 12.3 0.1 4.3 4 0 0 4 4 4 2 Salmonella repeat of unknown function (DUF824) DUF1533 PF07550.11 gi|284166600|ref|YP_003404879.1| - 0.00025 20.8 0.1 9.7 6.2 0.0 4.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1533) YtkA PF13115.6 gi|284166600|ref|YP_003404879.1| - 0.0025 18.4 12.5 1.8 9.2 0.1 6.0 6 0 0 6 6 6 1 YtkA-like DUF4249 PF14054.6 gi|284166600|ref|YP_003404879.1| - 0.0077 15.9 1.3 0.0077 15.9 1.3 3.7 2 2 3 5 5 5 1 Domain of unknown function (DUF4249) Glyco_hydro_65m PF03632.15 gi|284166600|ref|YP_003404879.1| - 0.11 11.4 0.0 1.2 7.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 65 central catalytic domain DUF2685 PF10886.8 gi|284166600|ref|YP_003404879.1| - 0.3 11.3 6.9 9.4 6.5 0.6 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2685) DUF3869 PF12985.7 gi|284166600|ref|YP_003404879.1| - 0.74 10.2 37.8 2.7 8.4 0.2 6.1 2 2 2 5 5 5 0 Domain of unknown function (DUF3869) PGF-CTERM PF18204.1 gi|284166600|ref|YP_003404879.1| - 0.87 9.6 7.3 1.3 9.1 5.2 2.6 2 0 0 2 2 2 0 PGF-CTERM motif PGF-CTERM PF18204.1 gi|284166601|ref|YP_003404880.1| - 3.9e-06 26.7 7.9 3.9e-06 26.7 7.9 2.2 2 0 0 2 2 2 1 PGF-CTERM motif DNA_pol_phi PF04931.13 gi|284166601|ref|YP_003404880.1| - 0.32 9.0 23.4 0.53 8.3 23.4 1.2 1 0 0 1 1 1 0 DNA polymerase phi Fn3-like PF14310.6 gi|284166601|ref|YP_003404880.1| - 0.37 10.9 2.2 15 5.7 0.0 4.1 4 0 0 4 4 4 0 Fibronectin type III-like domain Zip PF02535.22 gi|284166601|ref|YP_003404880.1| - 0.55 9.4 1.5 0.94 8.6 1.5 1.3 1 0 0 1 1 1 0 ZIP Zinc transporter ASH PF15780.5 gi|284166601|ref|YP_003404880.1| - 0.86 9.8 15.0 3.3 8.0 0.3 5.0 4 2 2 6 6 6 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin SnoaL_2 PF12680.7 gi|284166601|ref|YP_003404880.1| - 1.5 9.5 8.3 9.6 6.9 0.0 4.0 4 0 0 4 4 4 0 SnoaL-like domain Nop14 PF04147.12 gi|284166601|ref|YP_003404880.1| - 3 6.0 23.7 6.3 4.9 23.7 1.4 1 0 0 1 1 1 0 Nop14-like family SAPS PF04499.15 gi|284166601|ref|YP_003404880.1| - 5.1 5.8 9.0 12 4.6 9.0 1.5 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Pilin_N PF07790.11 gi|284166603|ref|YP_003404882.1| - 4.9e-12 46.6 0.2 9.1e-12 45.7 0.2 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Qn_am_d_aIII PF09099.10 gi|284166603|ref|YP_003404882.1| - 0.077 13.4 1.7 1 9.8 0.2 2.3 2 1 0 2 2 2 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III Methyltransf_11 PF08241.12 gi|284166604|ref|YP_003404883.1| - 8.5e-25 87.2 0.0 1.3e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284166604|ref|YP_003404883.1| - 9.8e-25 87.1 0.0 1.5e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166604|ref|YP_003404883.1| - 6.1e-19 68.3 0.0 7.4e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284166604|ref|YP_003404883.1| - 4.9e-18 65.3 0.0 1.4e-14 54.1 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284166604|ref|YP_003404883.1| - 1.1e-15 57.8 0.0 1.9e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284166604|ref|YP_003404883.1| - 1.3e-15 58.0 0.0 1.8e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|284166604|ref|YP_003404883.1| - 3.9e-07 29.4 0.0 4.1e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PCMT PF01135.19 gi|284166604|ref|YP_003404883.1| - 4.9e-07 29.7 0.0 6.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|284166604|ref|YP_003404883.1| - 2.5e-05 23.4 0.0 3.4e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.16 gi|284166604|ref|YP_003404883.1| - 3e-05 22.8 0.0 3.6e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|284166604|ref|YP_003404883.1| - 0.00025 20.6 0.0 0.00096 18.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|284166604|ref|YP_003404883.1| - 0.00045 19.9 0.0 0.00064 19.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|284166604|ref|YP_003404883.1| - 0.0016 17.8 0.0 0.0022 17.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|284166604|ref|YP_003404883.1| - 0.0053 16.1 0.0 0.012 15.0 0.0 1.5 1 1 0 1 1 1 1 O-methyltransferase domain DREV PF05219.12 gi|284166604|ref|YP_003404883.1| - 0.0059 15.7 0.0 0.0084 15.2 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.12 gi|284166604|ref|YP_003404883.1| - 0.016 14.8 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_33 PF10017.9 gi|284166604|ref|YP_003404883.1| - 0.022 13.9 0.1 0.05 12.7 0.0 1.6 2 0 0 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_8 PF05148.15 gi|284166604|ref|YP_003404883.1| - 0.029 14.2 0.0 0.29 11.0 0.0 2.0 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|284166604|ref|YP_003404883.1| - 0.034 14.1 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.11 gi|284166604|ref|YP_003404883.1| - 0.037 13.6 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.19 gi|284166604|ref|YP_003404883.1| - 0.055 13.6 0.0 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase PrmA PF06325.13 gi|284166604|ref|YP_003404883.1| - 0.19 11.1 0.0 0.45 9.9 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) ATP-synt_B PF00430.18 gi|284166605|ref|YP_003404884.1| - 8.2e-05 22.7 18.7 0.00011 22.3 18.7 1.3 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|284166605|ref|YP_003404884.1| - 0.00071 20.1 18.8 0.04 14.4 6.7 2.1 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit V-ATPase_G_2 PF16999.5 gi|284166605|ref|YP_003404884.1| - 0.0019 18.6 23.8 0.003 18.0 23.8 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|284166605|ref|YP_003404884.1| - 0.0062 16.6 13.7 0.74 9.9 0.8 2.1 1 1 1 2 2 2 2 DivIVA protein HrpE PF06188.12 gi|284166605|ref|YP_003404884.1| - 0.018 15.0 9.2 0.025 14.5 9.2 1.3 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.8 gi|284166605|ref|YP_003404884.1| - 0.025 14.0 21.9 0.42 10.0 21.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DUF883 PF05957.13 gi|284166605|ref|YP_003404884.1| - 0.35 11.5 14.8 0.54 10.9 10.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3435 PF11917.8 gi|284166605|ref|YP_003404884.1| - 0.35 9.7 6.0 0.37 9.7 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) vATP-synt_E PF01991.18 gi|284166605|ref|YP_003404884.1| - 0.43 9.9 22.7 0.087 12.2 13.5 2.2 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit YtxH PF12732.7 gi|284166605|ref|YP_003404884.1| - 1.2 9.7 5.6 46 4.6 5.6 2.3 1 1 0 1 1 1 0 YtxH-like protein GBP_C PF02841.14 gi|284166605|ref|YP_003404884.1| - 1.4 8.3 12.1 1.5 8.1 12.1 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Atg14 PF10186.9 gi|284166605|ref|YP_003404884.1| - 1.9 7.5 7.4 2.1 7.4 7.4 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Rotamase PF00639.21 gi|284166605|ref|YP_003404884.1| - 3.3 8.7 7.2 5.7 8.0 0.4 2.4 1 1 1 2 2 2 0 PPIC-type PPIASE domain DUF3043 PF11241.8 gi|284166605|ref|YP_003404884.1| - 6.5 6.8 10.0 8.7 6.3 10.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3043) V_ATPase_I PF01496.19 gi|284166606|ref|YP_003404885.1| - 2.9e-23 81.8 14.0 1.3e-12 46.5 1.7 4.7 3 2 1 4 4 4 3 V-type ATPase 116kDa subunit family Snapin_Pallidin PF14712.6 gi|284166606|ref|YP_003404885.1| - 0.048 14.1 1.8 1.6 9.2 0.6 2.3 2 0 0 2 2 2 0 Snapin/Pallidin Tropomyosin_1 PF12718.7 gi|284166606|ref|YP_003404885.1| - 0.054 13.6 5.1 5.7 7.1 0.1 2.6 2 0 0 2 2 2 0 Tropomyosin like Prefoldin_2 PF01920.20 gi|284166606|ref|YP_003404885.1| - 0.077 13.0 2.4 0.56 10.2 0.9 2.2 2 0 0 2 2 2 0 Prefoldin subunit DUF4988 PF16378.5 gi|284166606|ref|YP_003404885.1| - 0.077 12.6 1.7 8.4 6.0 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function DLP_helical PF18709.1 gi|284166606|ref|YP_003404885.1| - 0.17 11.0 2.1 0.29 10.3 0.5 1.9 2 0 0 2 2 2 0 Dynamin-like helical domain DUF4140 PF13600.6 gi|284166606|ref|YP_003404885.1| - 0.31 11.5 11.9 1.6 9.3 0.6 2.9 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) Spc24 PF08286.11 gi|284166606|ref|YP_003404885.1| - 0.34 11.2 3.2 20 5.5 1.2 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Syntaxin-6_N PF09177.11 gi|284166606|ref|YP_003404885.1| - 0.86 10.2 4.1 5.7 7.6 0.3 2.3 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Tektin PF03148.14 gi|284166606|ref|YP_003404885.1| - 0.88 8.2 4.8 0.97 8.1 1.1 2.0 2 0 0 2 2 2 0 Tektin family XhlA PF10779.9 gi|284166606|ref|YP_003404885.1| - 0.91 9.8 4.8 10 6.4 0.2 2.6 2 0 0 2 2 2 0 Haemolysin XhlA FlaC_arch PF05377.11 gi|284166606|ref|YP_003404885.1| - 0.92 10.0 4.0 11 6.5 1.0 3.0 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) DUF4763 PF15960.5 gi|284166606|ref|YP_003404885.1| - 1.6 8.0 4.0 1.9 7.7 1.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) ZapB PF06005.12 gi|284166606|ref|YP_003404885.1| - 7.8 7.0 9.9 2 8.9 4.5 2.3 2 0 0 2 2 2 0 Cell division protein ZapB ATP-synt_C PF00137.21 gi|284166607|ref|YP_003404886.1| - 1.2e-13 51.1 9.7 1.8e-13 50.6 9.7 1.2 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|284166608|ref|YP_003404887.1| - 2.1e-40 138.3 10.5 2.4e-40 138.1 10.5 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF773 PF05600.12 gi|284166608|ref|YP_003404887.1| - 0.0014 17.5 1.2 0.0016 17.2 1.2 1.2 1 0 0 1 1 1 1 CDK5 regulatory subunit-associated protein 3 Apolipoprotein PF01442.18 gi|284166608|ref|YP_003404887.1| - 0.046 13.6 21.8 0.16 11.9 12.1 2.1 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain OmpH PF03938.14 gi|284166608|ref|YP_003404887.1| - 0.1 13.0 8.0 0.15 12.4 8.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) V_ATPase_I PF01496.19 gi|284166608|ref|YP_003404887.1| - 0.32 8.9 0.8 0.33 8.8 0.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ATP-synt_B PF00430.18 gi|284166608|ref|YP_003404887.1| - 2.1 8.5 24.4 3.4 7.7 22.8 1.9 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DUF883 PF05957.13 gi|284166608|ref|YP_003404887.1| - 3.5 8.3 17.3 7.1 7.3 2.2 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DivIVA PF05103.13 gi|284166608|ref|YP_003404887.1| - 5.2 7.2 13.6 6.8 6.8 12.0 2.0 1 1 1 2 2 2 0 DivIVA protein V-ATPase_G_2 PF16999.5 gi|284166608|ref|YP_003404887.1| - 5.6 7.4 25.9 6.4 7.3 24.6 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Pinin_SDK_memA PF04696.13 gi|284166608|ref|YP_003404887.1| - 7.8 6.6 15.3 12 6.0 15.3 1.3 1 0 0 1 1 1 0 pinin/SDK/memA/ protein conserved region YtxH PF12732.7 gi|284166608|ref|YP_003404887.1| - 9.2 6.9 9.0 7.2 7.2 3.4 2.6 1 1 1 2 2 2 0 YtxH-like protein vATP-synt_AC39 PF01992.16 gi|284166609|ref|YP_003404888.1| - 5.7e-76 256.2 4.5 6.4e-76 256.0 4.5 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|284166610|ref|YP_003404889.1| - 2.2e-15 56.7 0.1 2.5e-15 56.5 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit AMP-binding_C PF13193.6 gi|284166610|ref|YP_003404889.1| - 0.038 15.0 0.6 3.4 8.7 0.2 2.2 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain ATP-synt_ab PF00006.25 gi|284166611|ref|YP_003404890.1| - 5.6e-92 307.2 0.0 7.3e-92 306.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|284166611|ref|YP_003404890.1| - 9.7e-39 132.0 0.1 1.7e-38 131.2 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|284166611|ref|YP_003404890.1| - 2e-11 44.3 3.7 2e-11 44.3 3.7 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|284166611|ref|YP_003404890.1| - 0.031 14.5 0.0 0.08 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|284166612|ref|YP_003404891.1| - 7.9e-65 218.5 0.0 1.2e-64 217.9 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|284166612|ref|YP_003404891.1| - 2.2e-14 53.7 1.2 5.5e-14 52.4 1.2 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|284166612|ref|YP_003404891.1| - 0.0025 17.9 0.4 0.0095 16.1 0.4 2.1 1 0 0 1 1 1 1 HAS barrel domain AMP-binding PF00501.28 gi|284166613|ref|YP_003404892.1| - 2.2e-97 326.4 0.3 2.5e-97 326.1 0.3 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284166613|ref|YP_003404892.1| - 3.7e-19 69.5 0.1 7.9e-19 68.4 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1980 PF09323.10 gi|284166614|ref|YP_003404893.1| - 0.17 11.8 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) BIRC6 PF12356.8 gi|284166614|ref|YP_003404893.1| - 2.4 7.5 4.4 3.1 7.2 4.4 1.2 1 0 0 1 1 1 0 Baculoviral IAP repeat-containing protein 6 zinc_ribbon_13 PF09855.9 gi|284166615|ref|YP_003404894.1| - 2.1e-26 91.9 0.3 2.3e-26 91.7 0.3 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|284166615|ref|YP_003404894.1| - 0.0052 17.1 0.2 0.0065 16.8 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|284166615|ref|YP_003404894.1| - 0.032 14.2 2.2 3.1 7.8 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|284166615|ref|YP_003404894.1| - 0.04 13.6 1.5 2.4 8.0 0.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|284166615|ref|YP_003404894.1| - 0.056 12.9 2.0 5.7 6.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|284166615|ref|YP_003404894.1| - 0.087 12.9 0.9 0.21 11.6 0.9 1.6 1 1 0 1 1 1 0 CpXC protein Elf1 PF05129.13 gi|284166615|ref|YP_003404894.1| - 0.11 12.5 0.5 0.47 10.5 0.5 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like TFIIS_C PF01096.18 gi|284166615|ref|YP_003404894.1| - 0.12 12.2 2.0 8 6.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2387 PF09526.10 gi|284166615|ref|YP_003404894.1| - 0.29 11.3 1.5 3.4 7.9 1.5 2.0 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.6 gi|284166615|ref|YP_003404894.1| - 0.3 11.0 2.8 6.9 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|284166615|ref|YP_003404894.1| - 0.99 9.5 4.3 16 5.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ATP-synt_D PF01813.17 gi|284166616|ref|YP_003404895.1| - 1.6e-53 181.5 8.5 2e-53 181.2 8.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit D PTPRCAP PF15713.5 gi|284166616|ref|YP_003404895.1| - 7.4 6.9 13.1 2.1 8.6 9.8 1.7 2 0 0 2 2 2 0 Protein tyrosine phosphatase receptor type C-associated PvlArgDC PF01862.16 gi|284166619|ref|YP_003404898.1| - 2.2e-37 128.4 0.2 2.7e-37 128.1 0.2 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.29 gi|284166620|ref|YP_003404899.1| - 3.6e-45 153.6 2.1 5.6e-45 153.0 0.1 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284166620|ref|YP_003404899.1| - 1.1e-14 53.9 0.3 3.1e-14 52.5 0.3 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|284166620|ref|YP_003404899.1| - 1.3e-08 35.2 0.2 3.2e-08 33.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|284166620|ref|YP_003404899.1| - 2.7e-07 30.5 0.1 1.1e-06 28.5 0.0 2.1 3 0 0 3 3 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|284166620|ref|YP_003404899.1| - 2.1e-06 27.8 0.2 1.5e-05 25.0 0.2 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Prot_ATP_ID_OB PF16450.5 gi|284166620|ref|YP_003404899.1| - 8.9e-06 25.6 0.8 2.2e-05 24.3 0.2 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain AAA_18 PF13238.6 gi|284166620|ref|YP_003404899.1| - 1.9e-05 25.2 0.3 0.0043 17.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284166620|ref|YP_003404899.1| - 5.5e-05 23.6 4.8 0.00023 21.6 0.3 3.3 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284166620|ref|YP_003404899.1| - 5.5e-05 23.4 2.6 0.001 19.3 0.4 3.0 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|284166620|ref|YP_003404899.1| - 8.1e-05 21.9 0.0 0.00017 20.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|284166620|ref|YP_003404899.1| - 0.00049 20.4 2.5 0.0033 17.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|284166620|ref|YP_003404899.1| - 0.00052 19.3 0.0 0.0012 18.1 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|284166620|ref|YP_003404899.1| - 0.0017 17.8 0.0 0.0038 16.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|284166620|ref|YP_003404899.1| - 0.002 18.1 0.1 0.0054 16.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_13 PF13166.6 gi|284166620|ref|YP_003404899.1| - 0.0023 16.7 1.0 0.26 9.9 1.6 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|284166620|ref|YP_003404899.1| - 0.003 17.3 0.0 0.0071 16.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|284166620|ref|YP_003404899.1| - 0.0048 16.6 0.1 0.076 12.7 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Prot_ATP_OB_N PF17758.1 gi|284166620|ref|YP_003404899.1| - 0.0049 16.5 0.3 0.013 15.1 0.3 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_33 PF13671.6 gi|284166620|ref|YP_003404899.1| - 0.0064 16.7 0.3 0.014 15.5 0.0 1.9 2 1 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|284166620|ref|YP_003404899.1| - 0.0064 16.4 0.1 0.1 12.5 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_24 PF13479.6 gi|284166620|ref|YP_003404899.1| - 0.0068 16.1 1.2 0.017 14.9 0.1 2.2 2 1 0 2 2 2 1 AAA domain APG6_N PF17675.1 gi|284166620|ref|YP_003404899.1| - 0.0082 16.7 1.2 0.033 14.7 1.2 2.0 1 0 0 1 1 1 1 Apg6 coiled-coil region AAA_17 PF13207.6 gi|284166620|ref|YP_003404899.1| - 0.0089 16.5 0.8 0.0089 16.5 0.8 3.1 2 1 0 2 2 2 1 AAA domain ZapB PF06005.12 gi|284166620|ref|YP_003404899.1| - 0.0089 16.4 5.6 0.0089 16.4 5.6 2.4 3 0 0 3 3 2 1 Cell division protein ZapB Rootletin PF15035.6 gi|284166620|ref|YP_003404899.1| - 0.012 15.7 4.0 0.026 14.5 4.0 1.5 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion AAA_7 PF12775.7 gi|284166620|ref|YP_003404899.1| - 0.014 15.0 0.0 0.035 13.6 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|284166620|ref|YP_003404899.1| - 0.014 14.6 0.1 0.11 11.6 0.0 2.4 2 1 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|284166620|ref|YP_003404899.1| - 0.015 15.6 0.0 0.032 14.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ATPase PF06745.13 gi|284166620|ref|YP_003404899.1| - 0.015 14.6 7.3 0.16 11.3 0.5 3.1 2 1 0 2 2 2 0 KaiC AAA_11 PF13086.6 gi|284166620|ref|YP_003404899.1| - 0.019 14.8 0.3 0.27 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain Taxilin PF09728.9 gi|284166620|ref|YP_003404899.1| - 0.021 14.0 0.9 0.038 13.2 0.9 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein ADK PF00406.22 gi|284166620|ref|YP_003404899.1| - 0.026 14.6 0.5 3.7 7.6 0.0 2.4 2 0 0 2 2 2 0 Adenylate kinase bZIP_1 PF00170.21 gi|284166620|ref|YP_003404899.1| - 0.033 14.3 2.4 0.45 10.6 0.4 2.5 1 1 1 2 2 2 0 bZIP transcription factor TsaE PF02367.17 gi|284166620|ref|YP_003404899.1| - 0.034 14.1 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Parvo_NS1 PF01057.17 gi|284166620|ref|YP_003404899.1| - 0.037 13.1 0.0 0.072 12.2 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 YkyA PF10368.9 gi|284166620|ref|YP_003404899.1| - 0.038 13.7 1.9 0.11 12.2 1.9 1.8 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein GAS PF13851.6 gi|284166620|ref|YP_003404899.1| - 0.043 13.2 4.6 0.081 12.3 4.6 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding ATPase_2 PF01637.18 gi|284166620|ref|YP_003404899.1| - 0.049 13.5 0.7 0.44 10.4 0.0 2.3 2 1 1 3 3 2 0 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|284166620|ref|YP_003404899.1| - 0.05 13.5 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Nup54 PF13874.6 gi|284166620|ref|YP_003404899.1| - 0.061 13.4 1.8 0.16 12.0 1.8 1.7 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Bac_DnaA PF00308.18 gi|284166620|ref|YP_003404899.1| - 0.072 12.9 0.2 0.73 9.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein ABC_tran PF00005.27 gi|284166620|ref|YP_003404899.1| - 0.087 13.3 1.1 0.22 12.0 0.0 2.3 2 1 0 2 2 1 0 ABC transporter HupF_HypC PF01455.18 gi|284166620|ref|YP_003404899.1| - 0.11 12.7 0.1 0.39 10.9 0.1 2.0 1 1 0 1 1 1 0 HupF/HypC family Spc7 PF08317.11 gi|284166620|ref|YP_003404899.1| - 0.13 11.1 3.5 0.26 10.1 3.5 1.5 1 0 0 1 1 1 0 Spc7 kinetochore protein AAA_25 PF13481.6 gi|284166620|ref|YP_003404899.1| - 0.18 11.4 0.1 0.18 11.4 0.1 3.5 3 1 1 4 4 3 0 AAA domain Zeta_toxin PF06414.12 gi|284166620|ref|YP_003404899.1| - 0.26 10.6 2.3 0.37 10.1 0.0 2.5 3 0 0 3 3 2 0 Zeta toxin NTPase_1 PF03266.15 gi|284166620|ref|YP_003404899.1| - 0.3 11.0 3.0 0.63 9.9 0.1 2.8 4 1 0 4 4 3 0 NTPase Csm1_N PF18504.1 gi|284166620|ref|YP_003404899.1| - 0.38 11.1 5.7 0.48 10.8 3.6 2.4 2 1 0 2 2 1 0 Csm1 N-terminal domain BLOC1_2 PF10046.9 gi|284166620|ref|YP_003404899.1| - 0.48 10.7 6.4 0.32 11.3 2.7 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V_ATPase_I PF01496.19 gi|284166620|ref|YP_003404899.1| - 0.58 8.0 1.7 0.77 7.6 1.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family eIF3_N PF09440.10 gi|284166620|ref|YP_003404899.1| - 0.66 10.4 4.8 0.39 11.2 1.5 2.1 2 0 0 2 2 2 0 eIF3 subunit 6 N terminal domain DNA_ligase_A_N PF04675.14 gi|284166620|ref|YP_003404899.1| - 1.1 9.5 3.6 1.6 9.0 0.1 2.6 3 0 0 3 3 2 0 DNA ligase N terminus AAA_23 PF13476.6 gi|284166620|ref|YP_003404899.1| - 1.4 9.4 3.9 27 5.2 0.1 2.7 2 1 0 2 2 2 0 AAA domain CENP-Q PF13094.6 gi|284166620|ref|YP_003404899.1| - 6.4 7.0 9.8 33 4.6 9.8 2.1 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit ABC_tran PF00005.27 gi|284166622|ref|YP_003404901.1| - 1.8e-26 93.3 0.0 2.3e-26 92.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166622|ref|YP_003404901.1| - 5.8e-17 62.4 0.1 2e-11 44.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|284166622|ref|YP_003404901.1| - 0.0023 17.7 0.0 0.0036 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|284166622|ref|YP_003404901.1| - 0.004 15.9 0.0 0.16 10.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|284166622|ref|YP_003404901.1| - 0.019 14.7 0.0 3.5 7.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|284166622|ref|YP_003404901.1| - 0.023 15.2 0.0 0.039 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|284166622|ref|YP_003404901.1| - 0.024 15.0 0.1 0.039 14.3 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|284166622|ref|YP_003404901.1| - 0.075 13.4 0.3 0.45 10.8 0.3 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|284166622|ref|YP_003404901.1| - 0.13 11.9 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|284166622|ref|YP_003404901.1| - 0.14 12.4 0.1 0.41 10.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284166622|ref|YP_003404901.1| - 0.18 12.2 0.1 1.1 9.7 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Peptidase_M3 PF01432.20 gi|284166623|ref|YP_003404902.1| - 1.4e-65 222.3 0.7 1.4e-65 222.3 0.7 2.2 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|284166623|ref|YP_003404902.1| - 2.8e-21 75.6 0.4 2.8e-21 75.6 0.4 2.8 2 0 0 2 2 2 1 Oligopeptidase F Reprolysin_3 PF13582.6 gi|284166623|ref|YP_003404902.1| - 0.13 12.7 0.0 0.5 10.9 0.0 1.9 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Oxidored_FMN PF00724.20 gi|284166624|ref|YP_003404903.1| - 6e-75 252.6 0.0 6.9e-75 252.4 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|284166624|ref|YP_003404903.1| - 0.00019 20.6 0.0 0.00033 19.9 0.0 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Peptidase_M28 PF04389.17 gi|284166625|ref|YP_003404904.1| - 9.8e-30 103.7 0.0 1.4e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|284166625|ref|YP_003404904.1| - 1.4e-11 44.2 0.2 3.9e-11 42.8 0.2 1.8 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|284166625|ref|YP_003404904.1| - 0.0046 16.7 0.6 0.013 15.2 0.5 1.6 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|284166625|ref|YP_003404904.1| - 0.016 14.2 0.2 0.029 13.4 0.2 1.3 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase NifU PF01106.17 gi|284166626|ref|YP_003404905.1| - 3.2e-13 49.6 0.0 4.2e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain ProSAAS PF07259.12 gi|284166627|ref|YP_003404906.1| - 0.0021 18.1 0.9 0.0026 17.8 0.9 1.2 1 0 0 1 1 1 1 ProSAAS precursor DUF3382 PF11862.8 gi|284166627|ref|YP_003404906.1| - 0.0076 16.5 3.4 0.04 14.2 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3382) MerE PF05052.12 gi|284166627|ref|YP_003404906.1| - 0.044 13.7 2.4 0.048 13.6 2.4 1.1 1 0 0 1 1 1 0 MerE protein PseudoU_synth_1 PF01416.20 gi|284166628|ref|YP_003404907.1| - 1.7e-17 63.8 0.0 1.1e-13 51.6 0.0 2.4 2 1 0 2 2 2 2 tRNA pseudouridine synthase TrkA_N PF02254.18 gi|284166629|ref|YP_003404908.1| - 1.6e-29 102.5 1.4 2.8e-29 101.7 1.4 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|284166629|ref|YP_003404908.1| - 1.3e-06 28.7 0.3 2.3e-06 28.0 0.3 1.5 1 1 0 1 1 1 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|284166629|ref|YP_003404908.1| - 0.00038 20.6 0.4 0.00089 19.4 0.2 1.6 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DAO PF01266.24 gi|284166629|ref|YP_003404908.1| - 0.00063 19.4 0.2 0.0008 19.1 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|284166629|ref|YP_003404908.1| - 0.0024 18.4 0.1 0.0058 17.2 0.1 1.8 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|284166629|ref|YP_003404908.1| - 0.0036 17.2 0.1 0.0063 16.4 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284166629|ref|YP_003404908.1| - 0.0046 17.1 0.1 0.0086 16.3 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|284166629|ref|YP_003404908.1| - 0.0082 15.8 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|284166629|ref|YP_003404908.1| - 0.03 14.3 0.1 0.14 12.1 0.0 2.2 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.12 gi|284166629|ref|YP_003404908.1| - 0.046 13.3 0.3 0.12 11.9 0.1 1.6 1 1 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_8 PF13450.6 gi|284166629|ref|YP_003404908.1| - 0.053 13.8 0.1 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF4389 PF14333.6 gi|284166629|ref|YP_003404908.1| - 0.65 10.0 2.6 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4389) IU_nuc_hydro PF01156.19 gi|284166630|ref|YP_003404909.1| - 3.6e-77 259.9 0.4 4.1e-77 259.7 0.4 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Sulfatase PF00884.23 gi|284166632|ref|YP_003404911.1| - 7e-43 147.2 0.0 9.6e-43 146.7 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|284166632|ref|YP_003404911.1| - 6.1e-07 29.3 0.0 0.037 13.6 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|284166632|ref|YP_003404911.1| - 0.0039 17.4 0.7 0.11 12.8 0.1 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4976) Sulfatase_C PF14707.6 gi|284166632|ref|YP_003404911.1| - 0.013 16.3 0.0 0.035 14.8 0.0 1.7 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF4994 PF16385.5 gi|284166632|ref|YP_003404911.1| - 0.015 15.2 0.5 0.62 10.0 0.5 2.6 1 1 0 1 1 1 0 Domain of unknown function DUF1501 PF07394.12 gi|284166632|ref|YP_003404911.1| - 0.075 12.1 0.2 0.12 11.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Sulfatase PF00884.23 gi|284166633|ref|YP_003404912.1| - 4e-47 161.1 0.1 5e-47 160.8 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|284166633|ref|YP_003404912.1| - 6.1e-18 65.5 2.4 4.5e-17 62.7 2.4 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4994 PF16385.5 gi|284166633|ref|YP_003404912.1| - 0.0015 18.4 0.0 0.0094 15.9 0.0 2.4 3 0 0 3 3 3 1 Domain of unknown function DUF1501 PF07394.12 gi|284166633|ref|YP_003404912.1| - 0.017 14.2 0.0 0.11 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) Phosphoesterase PF04185.14 gi|284166633|ref|YP_003404912.1| - 0.084 12.1 0.9 0.24 10.5 0.3 1.8 2 0 0 2 2 2 0 Phosphoesterase family ArsA_HSP20 PF17886.1 gi|284166634|ref|YP_003404913.1| - 0.061 12.9 0.0 0.7 9.5 0.0 2.2 1 1 0 1 1 1 0 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|284166634|ref|YP_003404913.1| - 0.083 13.1 0.0 6.7 6.9 0.0 2.0 2 0 0 2 2 2 0 Hsp20/alpha crystallin family PSII_BNR PF14870.6 gi|284166635|ref|YP_003404914.1| - 0.00011 21.6 0.8 0.011 15.1 0.3 2.3 2 0 0 2 2 2 2 Photosynthesis system II assembly factor YCF48 Hydrolase PF00702.26 gi|284166636|ref|YP_003404915.1| - 8.8e-35 120.9 6.1 2.1e-34 119.7 6.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|284166636|ref|YP_003404915.1| - 1.3e-33 116.0 3.3 1.3e-33 116.0 3.3 2.3 3 0 0 3 3 3 1 E1-E2 ATPase HMA PF00403.26 gi|284166636|ref|YP_003404915.1| - 1.8e-09 37.9 0.0 4.3e-09 36.7 0.0 1.7 1 0 0 1 1 1 1 Heavy-metal-associated domain zf-FCS PF06467.14 gi|284166636|ref|YP_003404915.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Hydrolase_3 PF08282.12 gi|284166636|ref|YP_003404915.1| - 0.13 12.0 0.1 0.48 10.1 0.3 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase zf-FLZ PF04570.14 gi|284166636|ref|YP_003404915.1| - 0.2 11.2 0.1 0.39 10.2 0.1 1.4 1 0 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 DUF1380 PF07128.12 gi|284166636|ref|YP_003404915.1| - 2.2 8.5 8.2 0.089 13.0 0.7 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1380) Mrr_cat PF04471.12 gi|284166637|ref|YP_003404916.1| - 4.8e-26 91.1 0.0 1.5e-25 89.4 0.0 1.8 2 0 0 2 2 2 1 Restriction endonuclease zf-CpG_bind_C PF12269.8 gi|284166637|ref|YP_003404916.1| - 0.028 14.2 3.7 0.051 13.3 3.7 1.4 1 0 0 1 1 1 0 CpG binding protein zinc finger C terminal domain Siva PF05458.12 gi|284166637|ref|YP_003404916.1| - 0.11 12.2 6.0 0.18 11.5 6.0 1.3 1 0 0 1 1 1 0 Cd27 binding protein (Siva) AAA_17 PF13207.6 gi|284166638|ref|YP_003404917.1| - 0.044 14.2 0.4 0.054 13.9 0.4 1.1 1 0 0 1 1 1 0 AAA domain Bac_luciferase PF00296.20 gi|284166639|ref|YP_003404918.1| - 5.8e-46 157.4 5.1 7.5e-46 157.0 5.1 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.21 gi|284166639|ref|YP_003404918.1| - 0.035 14.5 0.0 2.2 8.6 0.0 2.2 2 0 0 2 2 2 0 Radical SAM superfamily Aconitase PF00330.20 gi|284166640|ref|YP_003404919.1| - 3.9e-107 359.1 1.3 2.4e-105 353.2 1.3 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|284166640|ref|YP_003404919.1| - 2.6e-21 76.3 0.0 5.4e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|284166640|ref|YP_003404919.1| - 0.01 14.6 0.0 0.014 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) dUTPase PF00692.19 gi|284166641|ref|YP_003404920.1| - 1.4e-12 47.4 0.0 2e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|284166641|ref|YP_003404920.1| - 0.0038 16.1 0.0 0.0048 15.7 0.0 1.3 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) YdjM PF04307.14 gi|284166642|ref|YP_003404921.1| - 0.0039 16.5 20.0 0.098 12.0 19.3 2.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2227 PF09988.9 gi|284166642|ref|YP_003404921.1| - 0.38 10.6 2.7 3.5 7.5 0.1 2.7 1 1 2 3 3 3 0 Uncharacterized metal-binding protein (DUF2227) ExoD PF06055.12 gi|284166642|ref|YP_003404921.1| - 8.9 5.6 13.9 1.9 7.8 0.3 3.0 3 0 0 3 3 3 0 Exopolysaccharide synthesis, ExoD CopD PF05425.13 gi|284166643|ref|YP_003404922.1| - 0.0012 19.2 7.7 0.0012 19.2 7.7 1.7 2 0 0 2 2 2 1 Copper resistance protein D DUF4149 PF13664.6 gi|284166643|ref|YP_003404922.1| - 1.3 9.4 7.3 3.5 8.0 7.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) NAD_binding_2 PF03446.15 gi|284166645|ref|YP_003404924.1| - 5.3e-37 127.4 0.0 7.3e-37 127.0 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|284166645|ref|YP_003404924.1| - 1.4e-23 83.7 0.0 2.1e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|284166645|ref|YP_003404924.1| - 8.8e-06 26.2 0.1 1.3e-05 25.6 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|284166645|ref|YP_003404924.1| - 0.00033 20.6 0.1 0.00047 20.1 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|284166645|ref|YP_003404924.1| - 0.00033 20.9 0.3 0.00066 19.9 0.0 1.6 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_11 PF14833.6 gi|284166645|ref|YP_003404924.1| - 0.00057 20.1 0.1 0.02 15.2 0.0 2.9 2 2 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284166645|ref|YP_003404924.1| - 0.0028 17.0 0.0 0.0038 16.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|284166645|ref|YP_003404924.1| - 0.063 12.9 0.2 0.16 11.5 0.1 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.20 gi|284166645|ref|YP_003404924.1| - 0.31 11.1 1.4 0.96 9.6 1.4 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus HalOD1 PF18545.1 gi|284166646|ref|YP_003404925.1| - 2.2e-18 66.3 0.2 3.1e-18 65.8 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 HNH_2 PF13391.6 gi|284166647|ref|YP_003404926.1| - 3.1e-10 40.0 0.1 8e-10 38.7 0.1 1.8 1 1 0 1 1 1 1 HNH endonuclease AAA_assoc_C PF09821.9 gi|284166647|ref|YP_003404926.1| - 0.02 15.4 0.0 0.44 11.1 0.0 2.4 2 0 0 2 2 2 0 C-terminal AAA-associated domain HNH PF01844.23 gi|284166647|ref|YP_003404926.1| - 0.16 12.2 0.1 0.28 11.4 0.1 1.4 1 0 0 1 1 1 0 HNH endonuclease Ag332 PF04671.12 gi|284166648|ref|YP_003404927.1| - 4.8 7.2 6.8 2.8 8.0 0.5 2.9 3 0 0 3 3 3 0 Erythrocyte membrane-associated giant protein antigen 332 DnaT PF17948.1 gi|284166649|ref|YP_003404928.1| - 0.0045 16.6 0.2 0.056 13.1 0.1 2.3 2 0 0 2 2 2 1 DnaT DNA-binding domain DUF2892 PF11127.8 gi|284166650|ref|YP_003404929.1| - 5.7 7.1 11.3 11 6.2 11.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) DUF393 PF04134.12 gi|284166651|ref|YP_003404930.1| - 5.8e-12 46.9 0.1 6.9e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 LMF1 PF06762.14 gi|284166652|ref|YP_003404931.1| - 3.8e-126 421.8 14.4 1.7e-65 221.9 0.4 2.7 2 1 1 3 3 3 2 Lipase maturation factor ADH_N PF08240.12 gi|284166653|ref|YP_003404932.1| - 6e-28 96.9 0.0 1.1e-27 96.1 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284166653|ref|YP_003404932.1| - 2.5e-19 69.5 0.2 2.6e-15 56.6 0.1 2.3 2 0 0 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|284166653|ref|YP_003404932.1| - 1.3e-10 41.0 0.1 2.9e-10 39.9 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated AlaDh_PNT_C PF01262.21 gi|284166653|ref|YP_003404932.1| - 0.0027 17.1 0.0 0.0044 16.3 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 gi|284166653|ref|YP_003404932.1| - 0.0041 17.8 0.1 0.012 16.3 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284166653|ref|YP_003404932.1| - 0.0099 16.5 0.1 0.062 13.9 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain 2-Hacid_dh_C PF02826.19 gi|284166653|ref|YP_003404932.1| - 0.016 14.5 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|284166653|ref|YP_003404932.1| - 0.018 15.3 0.0 0.038 14.3 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|284166653|ref|YP_003404932.1| - 0.085 13.1 0.0 0.21 11.9 0.0 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Polyketide_cyc2 PF10604.9 gi|284166654|ref|YP_003404933.1| - 1.5e-07 31.8 0.4 2.7e-07 31.0 0.4 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|284166654|ref|YP_003404933.1| - 9.7e-05 22.6 0.0 0.00014 22.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport HpcH_HpaI PF03328.14 gi|284166655|ref|YP_003404934.1| - 1e-27 96.7 0.0 1.4e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Cupin_2 PF07883.11 gi|284166656|ref|YP_003404935.1| - 2.1e-10 40.2 0.6 3.1e-10 39.6 0.6 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|284166656|ref|YP_003404935.1| - 0.0026 17.4 0.0 0.0034 17.0 0.0 1.1 1 0 0 1 1 1 1 Cupin Zn_Tnp_IS1595 PF12760.7 gi|284166656|ref|YP_003404935.1| - 0.037 14.0 0.3 0.064 13.2 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|284166656|ref|YP_003404935.1| - 0.07 13.6 0.6 0.39 11.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Auxin_BP PF02041.16 gi|284166656|ref|YP_003404935.1| - 0.08 12.6 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein KduI PF04962.12 gi|284166656|ref|YP_003404935.1| - 0.13 11.5 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 KduI/IolB family Cupin_3 PF05899.12 gi|284166656|ref|YP_003404935.1| - 0.26 11.0 1.9 0.59 9.9 1.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF861) zinc_ribbon_9 PF14369.6 gi|284166656|ref|YP_003404935.1| - 1.3 9.3 6.9 15 6.0 1.2 2.6 1 1 1 2 2 2 0 zinc-ribbon MFS_1 PF07690.16 gi|284166657|ref|YP_003404936.1| - 2.5e-29 102.3 43.0 2.5e-29 102.3 43.0 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284166657|ref|YP_003404936.1| - 0.0017 17.3 3.0 0.092 11.6 0.3 3.1 3 0 0 3 3 3 2 MFS_1 like family MFS_4 PF06779.14 gi|284166657|ref|YP_003404936.1| - 0.0025 17.2 11.3 0.0025 17.2 11.3 2.5 2 1 0 2 2 2 2 Uncharacterised MFS-type transporter YbfB LacY_symp PF01306.19 gi|284166657|ref|YP_003404936.1| - 0.065 12.0 5.4 0.017 13.9 2.5 1.6 2 0 0 2 2 2 0 LacY proton/sugar symporter Putative_PNPOx PF01243.20 gi|284166658|ref|YP_003404937.1| - 6.1e-15 55.2 0.1 2.7e-14 53.1 0.1 1.9 1 1 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Beta-Casp PF10996.8 gi|284166659|ref|YP_003404938.1| - 1.5e-13 51.0 0.0 2.8e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|284166659|ref|YP_003404938.1| - 3.4e-12 46.1 0.2 1.2e-11 44.3 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|284166659|ref|YP_003404938.1| - 1.5e-08 34.9 5.8 5.8e-08 33.0 5.8 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284166659|ref|YP_003404938.1| - 9.5e-06 25.3 1.6 1.8e-05 24.4 1.2 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|284166659|ref|YP_003404938.1| - 9.1e-05 22.0 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Antibiotic_NAT PF02522.14 gi|284166659|ref|YP_003404938.1| - 0.091 12.6 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside 3-N-acetyltransferase Rhodanese PF00581.20 gi|284166659|ref|YP_003404938.1| - 0.15 12.6 0.0 0.45 11.0 0.0 1.8 2 0 0 2 2 2 0 Rhodanese-like domain SHOCT PF09851.9 gi|284166660|ref|YP_003404939.1| - 3.6e-06 26.5 0.2 7.9e-06 25.4 0.2 1.6 1 0 0 1 1 1 1 Short C-terminal domain Ribosomal_S6e PF01092.19 gi|284166664|ref|YP_003404943.1| - 2.1e-41 140.8 0.1 2.4e-41 140.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e PadR PF03551.14 gi|284166666|ref|YP_003404945.1| - 2.5e-09 37.0 0.1 4.6e-09 36.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|284166666|ref|YP_003404945.1| - 0.12 13.0 0.1 0.21 12.2 0.0 1.5 2 0 0 2 2 2 0 Replication terminator protein Arch_fla_DE PF04659.13 gi|284166667|ref|YP_003404946.1| - 6.4e-24 83.7 0.0 9.4e-24 83.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal flagella protein Allexi_40kDa PF05549.11 gi|284166667|ref|YP_003404946.1| - 0.1 12.1 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein T2SSF PF00482.23 gi|284166668|ref|YP_003404947.1| - 8.8e-16 58.0 1.0 4.3e-12 46.1 0.5 4.2 4 1 1 5 5 5 2 Type II secretion system (T2SS), protein F RNase_E_G PF10150.9 gi|284166668|ref|YP_003404947.1| - 0.064 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease E/G family AAA_32 PF13654.6 gi|284166668|ref|YP_003404947.1| - 0.13 11.0 0.1 0.22 10.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain Anoctamin PF04547.12 gi|284166668|ref|YP_003404947.1| - 2.6 6.8 10.0 0.32 9.8 2.5 2.6 2 1 0 2 2 2 0 Calcium-activated chloride channel DUF2207 PF09972.9 gi|284166668|ref|YP_003404947.1| - 7.8 5.1 23.3 0.12 11.1 1.7 3.6 3 1 0 3 3 3 0 Predicted membrane protein (DUF2207) T2SSE PF00437.20 gi|284166669|ref|YP_003404948.1| - 1.5e-44 152.1 0.0 2.2e-44 151.6 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|284166669|ref|YP_003404948.1| - 3.8e-05 24.1 0.0 0.0014 19.1 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284166669|ref|YP_003404948.1| - 0.0036 17.6 0.0 0.015 15.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|284166669|ref|YP_003404948.1| - 0.0055 17.2 0.0 0.015 15.8 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_7 PF12775.7 gi|284166669|ref|YP_003404948.1| - 0.011 15.3 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Glyco_transf_20 PF00982.21 gi|284166669|ref|YP_003404948.1| - 0.03 13.0 0.0 0.045 12.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 AAA_29 PF13555.6 gi|284166669|ref|YP_003404948.1| - 0.03 14.1 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|284166669|ref|YP_003404948.1| - 0.045 13.5 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 gi|284166669|ref|YP_003404948.1| - 0.056 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.18 gi|284166669|ref|YP_003404948.1| - 0.12 11.7 0.0 0.4 10.0 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|284166669|ref|YP_003404948.1| - 0.18 12.3 0.0 0.44 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|284166670|ref|YP_003404949.1| - 2.1e-17 63.3 0.0 3.3e-17 62.6 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|284166670|ref|YP_003404949.1| - 6.4e-08 32.4 0.4 2.1e-07 30.7 0.3 1.8 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284166670|ref|YP_003404949.1| - 2.9e-05 24.5 0.0 4.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|284166670|ref|YP_003404949.1| - 5.3e-05 23.2 0.0 7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 NACHT domain Rad51 PF08423.11 gi|284166670|ref|YP_003404949.1| - 0.00033 20.0 0.2 0.00077 18.8 0.2 1.4 1 1 0 1 1 1 1 Rad51 ABC_tran PF00005.27 gi|284166670|ref|YP_003404949.1| - 0.051 14.1 0.0 0.1 13.1 0.0 1.6 1 1 1 2 2 2 0 ABC transporter RecA PF00154.21 gi|284166670|ref|YP_003404949.1| - 0.06 12.8 0.3 0.097 12.1 0.2 1.6 1 1 0 1 1 1 0 recA bacterial DNA recombination protein AAA_5 PF07728.14 gi|284166670|ref|YP_003404949.1| - 0.073 13.1 0.1 0.28 11.2 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|284166670|ref|YP_003404949.1| - 0.11 12.8 0.1 0.3 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain Arch_flagellin PF01917.16 gi|284166671|ref|YP_003404950.1| - 4.4e-24 85.5 3.9 4.9e-24 85.4 3.9 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|284166671|ref|YP_003404950.1| - 0.00084 19.6 0.2 0.0013 18.9 0.2 1.3 1 0 0 1 1 1 1 CARDB DUF569 PF04601.13 gi|284166671|ref|YP_003404950.1| - 0.071 12.8 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF569) Arch_flagellin PF01917.16 gi|284166672|ref|YP_003404951.1| - 8.7e-08 32.5 1.5 1.2e-07 32.1 1.5 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Sensor PF13796.6 gi|284166672|ref|YP_003404951.1| - 0.015 15.4 0.0 0.021 14.9 0.0 1.2 1 0 0 1 1 1 0 Putative sensor Tad PF13400.6 gi|284166672|ref|YP_003404951.1| - 0.053 13.8 0.2 0.1 12.9 0.2 1.5 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF756 PF05506.12 gi|284166672|ref|YP_003404951.1| - 0.069 14.1 0.1 0.099 13.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF756) Arch_fla_DE PF04659.13 gi|284166673|ref|YP_003404952.1| - 1e-24 86.2 0.0 2e-24 85.3 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|284166673|ref|YP_003404952.1| - 2.9e-18 66.0 1.3 5.7e-18 65.1 1.3 1.5 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|284166673|ref|YP_003404952.1| - 0.0081 16.2 0.4 0.016 15.2 0.4 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Sec34 PF04136.15 gi|284166673|ref|YP_003404952.1| - 0.0093 15.9 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 1 Sec34-like family DHR10 PF18595.1 gi|284166673|ref|YP_003404952.1| - 0.0096 16.0 1.5 0.023 14.7 1.5 1.6 1 0 0 1 1 1 1 Designed helical repeat protein 10 domain FPP PF05911.11 gi|284166673|ref|YP_003404952.1| - 0.027 12.7 0.1 0.045 12.0 0.1 1.3 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil ADIP PF11559.8 gi|284166673|ref|YP_003404952.1| - 0.057 13.5 0.2 0.1 12.7 0.2 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding JIP_LZII PF16471.5 gi|284166673|ref|YP_003404952.1| - 0.069 13.3 2.8 0.15 12.3 2.8 1.5 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Spc7 PF08317.11 gi|284166673|ref|YP_003404952.1| - 0.073 11.9 0.5 0.13 11.1 0.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF16 PF01519.16 gi|284166673|ref|YP_003404952.1| - 0.079 13.5 2.1 0.11 13.0 0.9 1.8 2 0 0 2 2 2 0 Protein of unknown function DUF16 Snapin_Pallidin PF14712.6 gi|284166673|ref|YP_003404952.1| - 0.08 13.4 2.3 0.091 13.2 1.2 1.6 2 0 0 2 2 1 0 Snapin/Pallidin EMP24_GP25L PF01105.24 gi|284166673|ref|YP_003404952.1| - 0.082 12.9 0.2 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF2120 PF09893.9 gi|284166673|ref|YP_003404952.1| - 0.11 12.6 0.1 0.27 11.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Spectrin PF00435.21 gi|284166673|ref|YP_003404952.1| - 0.43 11.1 4.3 0.31 11.6 0.9 2.2 2 0 0 2 2 2 0 Spectrin repeat ABC_tran_CTD PF16326.5 gi|284166673|ref|YP_003404952.1| - 0.48 10.7 7.4 0.71 10.2 1.5 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain Med21 PF11221.8 gi|284166673|ref|YP_003404952.1| - 0.9 9.8 6.6 0.44 10.8 2.8 2.2 2 0 0 2 2 2 0 Subunit 21 of Mediator complex APG6_N PF17675.1 gi|284166673|ref|YP_003404952.1| - 1.2 9.6 6.3 0.16 12.5 1.7 1.9 2 0 0 2 2 2 0 Apg6 coiled-coil region Arch_flagellin PF01917.16 gi|284166675|ref|YP_003404954.1| - 3.7e-37 128.0 18.1 4.3e-37 127.8 18.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2749 PF10907.8 gi|284166675|ref|YP_003404954.1| - 0.11 12.7 1.2 0.28 11.4 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) Arch_flagellin PF01917.16 gi|284166676|ref|YP_003404955.1| - 1.6e-35 122.7 14.6 1.9e-35 122.5 14.6 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2749 PF10907.8 gi|284166676|ref|YP_003404955.1| - 0.16 12.2 1.5 0.35 11.1 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF4442 PF14539.6 gi|284166676|ref|YP_003404955.1| - 0.29 11.2 2.3 0.86 9.7 2.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) TAT_signal PF10518.9 gi|284166678|ref|YP_003404957.1| - 2.8e-06 26.9 5.6 4.2e-06 26.4 5.6 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|284166678|ref|YP_003404957.1| - 0.00051 19.3 0.5 0.00089 18.6 0.5 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CytB6-F_Fe-S PF08802.10 gi|284166678|ref|YP_003404957.1| - 0.15 12.1 0.5 0.26 11.4 0.5 1.3 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Bax1-I PF01027.20 gi|284166680|ref|YP_003404959.1| - 0.0017 18.2 23.3 0.0024 17.8 23.3 1.2 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF202 PF02656.15 gi|284166680|ref|YP_003404959.1| - 0.0032 17.9 3.1 0.0032 17.9 3.1 4.2 2 2 1 3 3 3 1 Domain of unknown function (DUF202) DPM3 PF08285.11 gi|284166680|ref|YP_003404959.1| - 0.22 11.8 3.8 7.8 6.8 0.3 2.7 2 1 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 7TM-7TMR_HD PF07698.11 gi|284166680|ref|YP_003404959.1| - 5.2 6.8 19.3 2.2 8.0 14.4 2.6 1 1 1 2 2 2 0 7TM receptor with intracellular HD hydrolase HATPase_c PF02518.26 gi|284166681|ref|YP_003404960.1| - 1.2e-25 90.2 0.0 2.4e-25 89.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284166681|ref|YP_003404960.1| - 7.9e-10 38.6 2.6 4.2e-09 36.3 0.1 2.7 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|284166681|ref|YP_003404960.1| - 1.7e-06 27.7 6.3 3.4e-06 26.7 6.3 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase MctB PF11382.8 gi|284166681|ref|YP_003404960.1| - 0.00073 19.3 2.7 0.0016 18.2 2.7 1.5 1 0 0 1 1 1 1 Copper transport outer membrane protein, MctB ApoLp-III PF07464.11 gi|284166681|ref|YP_003404960.1| - 0.022 14.8 0.5 0.33 11.1 0.3 2.1 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) HATPase_c_3 PF13589.6 gi|284166681|ref|YP_003404960.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KxDL PF10241.9 gi|284166681|ref|YP_003404960.1| - 0.27 11.5 1.6 0.51 10.7 1.6 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein DivIC PF04977.15 gi|284166681|ref|YP_003404960.1| - 0.39 10.5 4.7 0.84 9.4 4.7 1.5 1 0 0 1 1 1 0 Septum formation initiator ZapB PF06005.12 gi|284166681|ref|YP_003404960.1| - 0.82 10.1 10.9 3.6 8.1 11.3 1.9 1 1 1 2 2 2 0 Cell division protein ZapB KfrA_N PF11740.8 gi|284166681|ref|YP_003404960.1| - 2.7 8.7 10.0 1.1 10.0 6.9 1.9 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term bZIP_2 PF07716.15 gi|284166681|ref|YP_003404960.1| - 9 6.5 10.1 3.4 7.8 5.4 2.2 1 1 1 2 2 2 0 Basic region leucine zipper HTH_10 PF04967.12 gi|284166682|ref|YP_003404961.1| - 5.6e-15 54.9 0.0 9.4e-15 54.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284166682|ref|YP_003404961.1| - 3.8e-11 43.1 1.3 5e-11 42.7 1.3 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|284166682|ref|YP_003404961.1| - 1.1e-06 28.0 0.3 3.4e-06 26.5 0.1 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|284166682|ref|YP_003404961.1| - 0.00044 19.9 0.1 0.25 11.0 0.0 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 MarR_2 PF12802.7 gi|284166682|ref|YP_003404961.1| - 0.00093 19.0 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|284166682|ref|YP_003404961.1| - 0.0012 18.6 0.1 0.0023 17.7 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284166682|ref|YP_003404961.1| - 0.0071 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DHH PF01368.20 gi|284166683|ref|YP_003404962.1| - 0.0027 17.9 0.8 0.0053 17.0 0.8 1.5 1 0 0 1 1 1 1 DHH family Glyco_hydro_57 PF03065.15 gi|284166683|ref|YP_003404962.1| - 0.0087 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 PGM_PMM_II PF02879.16 gi|284166683|ref|YP_003404962.1| - 0.029 15.0 0.6 0.23 12.1 0.2 2.6 3 0 0 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DHHA1 PF02272.19 gi|284166683|ref|YP_003404962.1| - 0.047 14.1 0.8 0.17 12.3 0.2 2.3 2 1 0 2 2 2 0 DHHA1 domain CoA_binding_2 PF13380.6 gi|284166683|ref|YP_003404962.1| - 1.1 9.8 3.2 2.4 8.7 0.1 2.9 3 1 1 4 4 4 0 CoA binding domain Usp PF00582.26 gi|284166684|ref|YP_003404963.1| - 1.2e-34 119.8 6.7 1.4e-34 119.7 6.7 1.0 1 0 0 1 1 1 1 Universal stress protein family PIN_9 PF18477.1 gi|284166684|ref|YP_003404963.1| - 0.84 10.0 4.7 2.3 8.6 2.1 2.3 1 1 1 2 2 2 0 PIN like domain Usp PF00582.26 gi|284166685|ref|YP_003404964.1| - 7e-14 52.5 2.1 1.6e-13 51.3 2.1 1.6 1 1 0 1 1 1 1 Universal stress protein family Flp_Fap PF04964.14 gi|284166685|ref|YP_003404964.1| - 0.29 11.0 1.5 0.65 9.9 1.5 1.6 1 0 0 1 1 1 0 Flp/Fap pilin component Acetyltransf_1 PF00583.25 gi|284166686|ref|YP_003404965.1| - 3.1e-18 66.1 0.0 4.3e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284166686|ref|YP_003404965.1| - 1.9e-11 44.2 0.0 4e-11 43.2 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284166686|ref|YP_003404965.1| - 2.7e-11 43.5 0.0 4.6e-11 42.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166686|ref|YP_003404965.1| - 2.6e-06 27.3 0.0 4.7e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|284166686|ref|YP_003404965.1| - 6.1e-06 27.0 0.0 7.5e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166686|ref|YP_003404965.1| - 7.4e-06 26.1 0.0 1.9e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284166686|ref|YP_003404965.1| - 0.00037 20.6 0.0 0.00065 19.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|284166686|ref|YP_003404965.1| - 0.049 13.6 0.0 0.3 11.1 0.0 2.1 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase Desmo_N PF06771.11 gi|284166686|ref|YP_003404965.1| - 0.084 13.2 0.0 0.16 12.4 0.0 1.4 1 1 0 1 1 1 0 Viral Desmoplakin N-terminus Usp PF00582.26 gi|284166687|ref|YP_003404966.1| - 6.6e-14 52.6 0.1 4.9e-12 46.5 0.1 2.0 1 1 0 1 1 1 1 Universal stress protein family FlgH PF02107.16 gi|284166687|ref|YP_003404966.1| - 0.011 15.4 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 Flagellar L-ring protein DAGK_cat PF00781.24 gi|284166687|ref|YP_003404966.1| - 0.038 13.6 0.1 0.073 12.7 0.1 1.4 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain AAA PF00004.29 gi|284166688|ref|YP_003404967.1| - 4.4e-39 133.9 0.0 1e-38 132.7 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284166688|ref|YP_003404967.1| - 5e-09 35.8 0.1 1.2e-08 34.6 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|284166688|ref|YP_003404967.1| - 3.2e-05 23.9 0.0 0.00014 21.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|284166688|ref|YP_003404967.1| - 0.0002 21.9 0.1 0.016 15.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|284166688|ref|YP_003404967.1| - 0.00026 21.2 0.0 0.00077 19.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|284166688|ref|YP_003404967.1| - 0.00034 20.9 1.4 0.2 11.9 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|284166688|ref|YP_003404967.1| - 0.00035 21.0 1.5 0.02 15.3 0.8 3.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_7 PF12775.7 gi|284166688|ref|YP_003404967.1| - 0.00051 19.6 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region RuvB_N PF05496.12 gi|284166688|ref|YP_003404967.1| - 0.00058 19.6 0.0 0.0013 18.4 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|284166688|ref|YP_003404967.1| - 0.0013 19.0 0.1 0.0054 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|284166688|ref|YP_003404967.1| - 0.0033 17.6 0.0 0.018 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|284166688|ref|YP_003404967.1| - 0.0075 15.5 0.1 0.015 14.5 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|284166688|ref|YP_003404967.1| - 0.012 14.9 0.0 0.021 14.0 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|284166688|ref|YP_003404967.1| - 0.012 16.1 0.2 0.042 14.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|284166688|ref|YP_003404967.1| - 0.014 15.1 0.1 0.061 13.1 0.0 2.1 2 1 0 2 2 2 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|284166688|ref|YP_003404967.1| - 0.016 14.3 0.0 0.036 13.1 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|284166688|ref|YP_003404967.1| - 0.02 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|284166688|ref|YP_003404967.1| - 0.026 14.1 0.0 0.3 10.6 0.0 2.4 1 1 1 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|284166688|ref|YP_003404967.1| - 0.038 13.4 0.0 0.091 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|284166688|ref|YP_003404967.1| - 0.042 13.7 0.2 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Cytidylate_kin2 PF13189.6 gi|284166688|ref|YP_003404967.1| - 0.051 13.7 0.1 0.53 10.4 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family RNA_helicase PF00910.22 gi|284166688|ref|YP_003404967.1| - 0.056 13.8 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|284166688|ref|YP_003404967.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|284166688|ref|YP_003404967.1| - 0.13 12.8 0.0 0.46 11.0 0.0 1.9 2 0 0 2 2 2 0 ABC transporter PHP PF02811.19 gi|284166689|ref|YP_003404968.1| - 2.8e-07 31.0 0.0 4.6e-07 30.3 0.0 1.4 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|284166689|ref|YP_003404968.1| - 5.8e-06 26.0 0.1 3.6e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 PHP-associated DUF2237 PF09996.9 gi|284166690|ref|YP_003404969.1| - 4.3e-52 175.0 0.0 5e-52 174.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) Lactamase_B_2 PF12706.7 gi|284166691|ref|YP_003404970.1| - 1.8e-19 70.0 1.5 2.4e-19 69.6 1.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284166691|ref|YP_003404970.1| - 3.7e-05 23.8 5.7 5.4e-05 23.3 5.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Mur_ligase_M PF08245.12 gi|284166691|ref|YP_003404970.1| - 0.061 13.3 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 Mur ligase middle domain ATPase PF06745.13 gi|284166692|ref|YP_003404971.1| - 4.1e-69 232.5 3.4 1.5e-38 132.5 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|284166692|ref|YP_003404971.1| - 1.4e-11 44.3 0.0 1.8e-06 27.7 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|284166692|ref|YP_003404971.1| - 6.6e-09 36.4 0.0 0.00092 19.6 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|284166692|ref|YP_003404971.1| - 1.7e-08 34.8 1.3 0.00027 21.2 0.1 3.0 2 2 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|284166692|ref|YP_003404971.1| - 4.7e-08 32.7 0.0 0.00057 19.3 0.0 2.6 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|284166692|ref|YP_003404971.1| - 8.2e-08 31.9 0.0 0.0003 20.1 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) RecA PF00154.21 gi|284166692|ref|YP_003404971.1| - 1.3e-06 28.1 0.6 0.0003 20.3 0.0 2.5 2 1 0 2 2 2 1 recA bacterial DNA recombination protein AAA PF00004.29 gi|284166692|ref|YP_003404971.1| - 6.7e-06 26.6 1.0 0.017 15.5 0.1 3.0 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.11 gi|284166692|ref|YP_003404971.1| - 1.1e-05 24.8 1.6 0.013 14.8 0.2 3.0 3 0 0 3 3 3 2 Rad51 GvpD PF07088.11 gi|284166692|ref|YP_003404971.1| - 2e-05 23.4 0.2 7e-05 21.6 0.0 1.9 2 0 0 2 2 2 1 GvpD gas vesicle protein ResIII PF04851.15 gi|284166692|ref|YP_003404971.1| - 6.1e-05 23.1 0.0 0.069 13.1 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|284166692|ref|YP_003404971.1| - 0.00015 21.6 0.0 0.44 10.2 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein PAXNEB PF05625.11 gi|284166692|ref|YP_003404971.1| - 0.00018 20.8 0.3 0.022 13.9 0.1 3.1 4 0 0 4 4 4 1 PAXNEB protein AAA_18 PF13238.6 gi|284166692|ref|YP_003404971.1| - 0.0002 21.9 0.0 0.27 11.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|284166692|ref|YP_003404971.1| - 0.00027 20.7 0.1 0.26 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain MEDS PF14417.6 gi|284166692|ref|YP_003404971.1| - 0.00054 19.8 0.0 0.16 11.8 0.0 2.4 2 1 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain ATPase_2 PF01637.18 gi|284166692|ref|YP_003404971.1| - 0.00066 19.7 0.0 0.69 9.8 0.0 2.4 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|284166692|ref|YP_003404971.1| - 0.00066 19.2 0.1 0.19 11.1 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_11 PF13086.6 gi|284166692|ref|YP_003404971.1| - 0.00072 19.4 0.0 0.72 9.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|284166692|ref|YP_003404971.1| - 0.0012 18.7 0.3 0.58 9.8 0.0 3.1 3 1 1 4 4 3 1 AAA domain AAA_7 PF12775.7 gi|284166692|ref|YP_003404971.1| - 0.0012 18.3 0.1 0.66 9.5 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region NACHT PF05729.12 gi|284166692|ref|YP_003404971.1| - 0.0013 18.7 0.0 2.3 8.1 0.0 2.6 2 0 0 2 2 2 2 NACHT domain T2SSE PF00437.20 gi|284166692|ref|YP_003404971.1| - 0.0014 17.8 0.2 0.098 11.7 0.0 2.5 2 1 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|284166692|ref|YP_003404971.1| - 0.0035 17.4 0.2 5.9 6.9 0.0 3.1 3 1 0 3 3 3 0 AAA domain AAA_5 PF07728.14 gi|284166692|ref|YP_003404971.1| - 0.0054 16.7 0.2 1.3 9.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|284166692|ref|YP_003404971.1| - 0.0067 16.8 0.1 3.2 8.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|284166692|ref|YP_003404971.1| - 0.0068 16.9 0.0 1.1 9.7 0.1 2.4 2 0 0 2 2 2 1 ABC transporter Zeta_toxin PF06414.12 gi|284166692|ref|YP_003404971.1| - 0.013 14.8 0.0 2.1 7.6 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.15 gi|284166692|ref|YP_003404971.1| - 0.014 15.4 1.9 4.2 7.3 0.9 2.9 2 2 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|284166692|ref|YP_003404971.1| - 0.025 14.9 0.0 5.8 7.4 0.0 2.5 2 0 0 2 2 2 0 RNA helicase DUF1788 PF08747.11 gi|284166692|ref|YP_003404971.1| - 0.093 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1788) cobW PF02492.19 gi|284166692|ref|YP_003404971.1| - 0.1 12.1 0.0 6.5 6.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PIG-L PF02585.17 gi|284166692|ref|YP_003404971.1| - 0.12 13.0 0.0 0.27 11.9 0.0 1.6 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Sigma54_activat PF00158.26 gi|284166692|ref|YP_003404971.1| - 0.13 12.0 0.3 7.1 6.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|284166692|ref|YP_003404971.1| - 0.13 12.7 0.5 0.39 11.2 0.5 1.7 1 0 0 1 1 1 0 AAA domain DUF835 PF05763.12 gi|284166692|ref|YP_003404971.1| - 0.16 11.7 0.0 0.76 9.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF835) CbiA PF01656.23 gi|284166692|ref|YP_003404971.1| - 0.18 11.9 0.2 0.83 9.7 0.1 2.2 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DAP3 PF10236.9 gi|284166692|ref|YP_003404971.1| - 0.19 10.9 0.0 3.4 6.7 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 TsaE PF02367.17 gi|284166692|ref|YP_003404971.1| - 0.2 11.6 0.3 5.7 7.0 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|284166692|ref|YP_003404971.1| - 0.33 11.1 1.0 33 4.6 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284166692|ref|YP_003404971.1| - 0.39 10.5 2.5 2.8 7.7 0.2 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|284166692|ref|YP_003404971.1| - 1.3 7.9 3.0 0.79 8.6 0.0 2.0 3 0 0 3 3 2 0 Type IV secretion-system coupling protein DNA-binding domain HATPase_c PF02518.26 gi|284166693|ref|YP_003404972.1| - 1.7e-30 105.8 0.0 2.6e-30 105.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284166693|ref|YP_003404972.1| - 4.9e-11 42.5 1.3 2e-10 40.5 0.0 2.6 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|284166693|ref|YP_003404972.1| - 0.00016 21.6 0.0 0.00035 20.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain His_kinase PF06580.13 gi|284166693|ref|YP_003404972.1| - 0.0033 17.7 0.1 0.0094 16.3 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase HATPase_c_3 PF13589.6 gi|284166693|ref|YP_003404972.1| - 0.012 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284166693|ref|YP_003404972.1| - 0.041 13.8 0.0 0.082 12.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain Usp PF00582.26 gi|284166695|ref|YP_003404974.1| - 9.3e-32 110.5 0.2 1.1e-31 110.3 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family PhoU PF01895.19 gi|284166697|ref|YP_003404976.1| - 4.9e-22 78.2 8.6 2.2e-17 63.3 1.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|284166697|ref|YP_003404976.1| - 1.5e-08 34.4 0.0 4.7e-08 32.8 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF3209 PF11483.8 gi|284166697|ref|YP_003404976.1| - 0.62 10.5 5.0 6.2 7.3 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3209) ABC_tran PF00005.27 gi|284166698|ref|YP_003404977.1| - 1.4e-31 109.8 0.0 2.4e-31 109.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166698|ref|YP_003404977.1| - 1.1e-12 48.4 0.1 3.3e-05 23.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284166698|ref|YP_003404977.1| - 3.4e-09 36.5 0.2 7.2e-08 32.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284166698|ref|YP_003404977.1| - 1.9e-05 24.9 0.0 4e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|284166698|ref|YP_003404977.1| - 9.6e-05 22.0 0.1 0.0042 16.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|284166698|ref|YP_003404977.1| - 0.00019 21.4 0.0 0.00045 20.2 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|284166698|ref|YP_003404977.1| - 0.00023 21.0 0.0 0.0012 18.6 0.0 1.9 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|284166698|ref|YP_003404977.1| - 0.00074 19.2 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|284166698|ref|YP_003404977.1| - 0.00094 19.6 0.7 0.0082 16.5 0.7 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|284166698|ref|YP_003404977.1| - 0.001 19.6 0.2 0.0036 17.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain DeoRC PF00455.22 gi|284166698|ref|YP_003404977.1| - 0.0021 18.0 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|284166698|ref|YP_003404977.1| - 0.0066 16.2 0.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|284166698|ref|YP_003404977.1| - 0.011 16.3 0.0 0.039 14.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|284166698|ref|YP_003404977.1| - 0.014 14.2 0.0 1.1 7.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|284166698|ref|YP_003404977.1| - 0.027 14.6 0.0 0.06 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|284166698|ref|YP_003404977.1| - 0.041 13.8 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain KdpD PF02702.17 gi|284166698|ref|YP_003404977.1| - 0.083 12.4 0.2 0.14 11.6 0.2 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Adeno_IVa2 PF02456.15 gi|284166698|ref|YP_003404977.1| - 0.087 11.6 0.0 0.91 8.3 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_19 PF13245.6 gi|284166698|ref|YP_003404977.1| - 0.095 13.0 0.0 5.1 7.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain Shigella_OspC PF06128.11 gi|284166698|ref|YP_003404977.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Shigella flexneri OspC protein NACHT PF05729.12 gi|284166698|ref|YP_003404977.1| - 0.19 11.6 0.0 0.45 10.4 0.0 1.6 2 0 0 2 2 2 0 NACHT domain PhoU PF01895.19 gi|284166699|ref|YP_003404978.1| - 3.5e-37 126.7 12.4 2.3e-19 69.6 2.7 2.2 2 0 0 2 2 2 2 PhoU domain HTH_20 PF12840.7 gi|284166700|ref|YP_003404979.1| - 5e-10 39.3 0.4 5e-10 39.3 0.4 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284166700|ref|YP_003404979.1| - 3.4e-08 33.2 0.2 3.4e-08 33.2 0.2 2.0 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284166700|ref|YP_003404979.1| - 0.00025 20.9 0.0 0.00068 19.5 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|284166700|ref|YP_003404979.1| - 0.0012 18.4 0.0 0.0024 17.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|284166700|ref|YP_003404979.1| - 0.0012 18.7 0.1 0.0028 17.5 0.1 1.7 1 1 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|284166700|ref|YP_003404979.1| - 0.0019 17.9 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) PaaX PF07848.12 gi|284166700|ref|YP_003404979.1| - 0.0098 16.1 0.1 0.032 14.4 0.0 1.8 2 0 0 2 2 2 1 PaaX-like protein HTH_27 PF13463.6 gi|284166700|ref|YP_003404979.1| - 0.017 15.6 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|284166700|ref|YP_003404979.1| - 0.019 14.6 0.2 0.039 13.6 0.2 1.6 1 1 0 1 1 1 0 Replication protein C N-terminal domain DUF390 PF04094.14 gi|284166700|ref|YP_003404979.1| - 0.038 12.3 0.8 0.045 12.1 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF390) Penicillinase_R PF03965.16 gi|284166700|ref|YP_003404979.1| - 0.042 14.2 0.1 0.17 12.2 0.0 2.0 1 1 1 2 2 2 0 Penicillinase repressor HTH_34 PF13601.6 gi|284166700|ref|YP_003404979.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain SBF PF01758.16 gi|284166701|ref|YP_003404980.1| - 4.8e-52 176.5 8.0 4.8e-52 176.5 8.0 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family PMT_4TMC PF16192.5 gi|284166701|ref|YP_003404980.1| - 3.5 7.2 9.4 0.81 9.2 0.8 3.0 3 0 0 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase LMWPc PF01451.21 gi|284166702|ref|YP_003404981.1| - 5.9e-26 91.5 0.1 1.5e-25 90.3 0.1 1.6 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase PBP_like_2 PF12849.7 gi|284166703|ref|YP_003404982.1| - 5.1e-24 85.4 1.0 8.1e-24 84.8 1.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|284166703|ref|YP_003404982.1| - 2.3e-15 56.2 0.0 4.4e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|284166703|ref|YP_003404982.1| - 0.0061 16.4 1.1 0.011 15.6 1.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|284166703|ref|YP_003404982.1| - 0.13 11.6 2.0 0.31 10.4 2.0 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|284166704|ref|YP_003404983.1| - 2.9e-16 59.7 16.3 2.9e-16 59.7 16.3 2.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Deltameth_res PF16020.5 gi|284166704|ref|YP_003404983.1| - 0.34 10.8 0.0 0.34 10.8 0.0 3.8 4 0 0 4 4 4 0 Deltamethrin resistance BPD_transp_1 PF00528.22 gi|284166705|ref|YP_003404984.1| - 9.5e-21 74.4 14.2 9.5e-21 74.4 14.2 4.5 2 1 3 5 5 5 1 Binding-protein-dependent transport system inner membrane component zf-Di19 PF05605.12 gi|284166706|ref|YP_003404985.1| - 0.047 14.0 0.1 0.063 13.6 0.1 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Gas_vesicle_C PF01304.17 gi|284166707|ref|YP_003404986.1| - 0.14 12.1 3.2 0.23 11.5 3.2 1.3 1 0 0 1 1 1 0 Gas vesicles protein GVPc repeated domain GTP_EFTU PF00009.27 gi|284166708|ref|YP_003404987.1| - 5.6e-30 104.3 0.5 3e-29 101.9 0.5 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|284166708|ref|YP_003404987.1| - 5.7e-30 103.4 0.1 1.2e-29 102.3 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|284166708|ref|YP_003404987.1| - 1.4e-08 35.0 2.4 4.4e-08 33.4 2.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|284166708|ref|YP_003404987.1| - 3.1e-05 23.9 0.3 0.0024 17.8 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|284166708|ref|YP_003404987.1| - 0.00012 22.1 0.0 0.00027 21.0 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 gi|284166708|ref|YP_003404987.1| - 0.02 14.5 0.2 0.7 9.5 0.1 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|284166708|ref|YP_003404987.1| - 0.027 14.2 0.2 0.25 11.1 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|284166708|ref|YP_003404987.1| - 0.033 13.7 0.4 5.5 6.5 0.0 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|284166708|ref|YP_003404987.1| - 0.053 13.5 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|284166708|ref|YP_003404987.1| - 0.07 12.6 0.0 4 6.8 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PIN_9 PF18477.1 gi|284166709|ref|YP_003404988.1| - 6.8e-39 132.8 0.4 7.7e-39 132.6 0.4 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|284166709|ref|YP_003404988.1| - 9.7e-07 28.5 0.1 1.3e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.6 gi|284166709|ref|YP_003404988.1| - 0.074 13.8 0.5 0.13 13.0 0.5 1.5 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|284166710|ref|YP_003404989.1| - 1.9e-15 57.0 0.0 3e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|284166710|ref|YP_003404989.1| - 1.1e-12 48.1 0.2 2.7e-12 46.8 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|284166710|ref|YP_003404989.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|284166711|ref|YP_003404990.1| - 1.2e-13 51.0 0.2 1.4e-13 50.7 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|284166711|ref|YP_003404990.1| - 0.0016 18.4 0.5 0.0019 18.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|284166711|ref|YP_003404990.1| - 0.23 11.2 3.4 0.33 10.7 3.4 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DUF359 PF04019.12 gi|284166712|ref|YP_003404991.1| - 8.4e-41 138.6 0.3 1.1e-40 138.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF3150 PF11348.8 gi|284166713|ref|YP_003404992.1| - 0.0006 19.1 1.2 0.044 13.0 0.5 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3150) GPW_gp25 PF04965.14 gi|284166713|ref|YP_003404992.1| - 0.078 12.8 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Gene 25-like lysozyme FAA_hydrolase PF01557.18 gi|284166714|ref|YP_003404993.1| - 1.4e-58 198.1 0.0 1.9e-58 197.7 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family HU-HIG PF18291.1 gi|284166714|ref|YP_003404993.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 HU domain fused to wHTH, Ig, or Glycine-rich motif Cyclase PF04199.13 gi|284166715|ref|YP_003404994.1| - 9.3e-34 116.6 0.0 1.2e-33 116.2 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase FAD_binding_3 PF01494.19 gi|284166716|ref|YP_003404995.1| - 1.2e-13 51.1 0.4 5.4e-10 39.0 0.3 2.9 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|284166716|ref|YP_003404995.1| - 4.8e-06 25.9 0.0 0.033 13.2 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|284166716|ref|YP_003404995.1| - 4e-05 23.4 0.3 0.07 12.7 0.0 2.8 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284166716|ref|YP_003404995.1| - 0.00071 18.9 0.4 0.024 13.9 0.1 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284166716|ref|YP_003404995.1| - 0.018 13.7 0.0 0.051 12.3 0.0 1.6 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|284166716|ref|YP_003404995.1| - 0.019 14.1 0.5 0.18 10.9 0.0 2.1 1 1 0 2 2 2 0 FAD binding domain FAD_oxidored PF12831.7 gi|284166716|ref|YP_003404995.1| - 0.05 12.9 0.1 0.071 12.5 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|284166716|ref|YP_003404995.1| - 0.063 12.1 0.0 0.19 10.5 0.0 1.8 1 1 0 1 1 1 0 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|284166716|ref|YP_003404995.1| - 0.086 13.1 0.0 0.28 11.4 0.0 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MatE PF01554.18 gi|284166717|ref|YP_003404996.1| - 3.8e-43 146.9 27.6 8.7e-24 84.0 11.4 2.7 2 1 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|284166717|ref|YP_003404996.1| - 1.4e-06 28.5 7.3 1.4e-06 28.5 7.3 4.2 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain FAD_binding_4 PF01565.23 gi|284166718|ref|YP_003404997.1| - 1.2e-34 119.0 7.0 1.7e-34 118.5 7.0 1.2 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|284166718|ref|YP_003404997.1| - 8.4e-09 35.4 0.1 1.9e-08 34.3 0.1 1.6 1 0 0 1 1 1 1 Berberine and berberine like FAD_binding_4 PF01565.23 gi|284166719|ref|YP_003404998.1| - 6.6e-35 119.9 0.6 1.1e-34 119.2 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|284166719|ref|YP_003404998.1| - 5.1e-13 48.9 0.4 5.1e-13 48.9 0.4 2.1 2 0 0 2 2 2 1 Berberine and berberine like Bacteriocin_IIc PF10439.9 gi|284166721|ref|YP_003405000.1| - 0.0038 17.3 8.5 0.0046 17.0 8.5 1.1 1 0 0 1 1 1 1 Bacteriocin class II with double-glycine leader peptide DUF389 PF04087.14 gi|284166722|ref|YP_003405001.1| - 2.7e-31 108.5 18.5 2.7e-31 108.5 18.5 1.8 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Spore_III_AF PF09581.10 gi|284166722|ref|YP_003405001.1| - 0.088 12.8 0.3 0.18 11.8 0.3 1.5 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) MtN3_slv PF03083.16 gi|284166722|ref|YP_003405001.1| - 0.15 12.1 0.3 1.1 9.4 0.2 2.1 2 0 0 2 2 2 0 Sugar efflux transporter for intercellular exchange MFS_1 PF07690.16 gi|284166724|ref|YP_003405003.1| - 4.1e-23 81.9 78.8 1.4e-17 63.7 46.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|284166724|ref|YP_003405003.1| - 0.00016 21.1 43.6 0.00021 20.7 43.6 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB GCV_T PF01571.21 gi|284166725|ref|YP_003405004.1| - 4.4e-40 137.7 0.0 6.1e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|284166725|ref|YP_003405004.1| - 1.2e-13 50.8 0.5 3.5e-13 49.3 0.5 1.9 1 1 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain HTH_20 PF12840.7 gi|284166726|ref|YP_003405005.1| - 0.00014 21.9 0.2 0.00019 21.4 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284166726|ref|YP_003405005.1| - 0.0014 18.5 0.3 0.0018 18.1 0.3 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284166726|ref|YP_003405005.1| - 0.0024 17.5 0.1 0.0034 17.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family RPA_C PF08784.11 gi|284166726|ref|YP_003405005.1| - 0.0045 17.6 0.0 0.0059 17.3 0.0 1.1 1 0 0 1 1 1 1 Replication protein A C terminal Rrf2 PF02082.20 gi|284166726|ref|YP_003405005.1| - 0.061 13.7 0.0 0.078 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_47 PF16221.5 gi|284166726|ref|YP_003405005.1| - 0.15 11.7 0.1 0.18 11.4 0.1 1.1 1 0 0 1 1 1 0 winged helix-turn-helix XdhC_CoxI PF02625.16 gi|284166727|ref|YP_003405006.1| - 0.0015 18.7 0.2 0.0053 16.9 0.2 1.9 1 0 0 1 1 1 1 XdhC and CoxI family DUF5611 PF18446.1 gi|284166728|ref|YP_003405007.1| - 5.4e-30 104.3 0.3 6.1e-30 104.1 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) DUF2933 PF11666.8 gi|284166730|ref|YP_003405009.1| - 0.16 12.0 0.2 0.16 12.0 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2933) Chlor_dismutase PF06778.12 gi|284166731|ref|YP_003405010.1| - 5.1e-63 212.2 0.0 8.8e-63 211.4 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|284166731|ref|YP_003405010.1| - 3.3e-09 36.7 0.1 3.3e-09 36.7 0.1 3.8 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase PadR PF03551.14 gi|284166732|ref|YP_003405011.1| - 2.7e-23 81.7 0.1 4.8e-23 80.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|284166732|ref|YP_003405011.1| - 0.0071 17.0 0.0 0.011 16.4 0.0 1.2 1 0 0 1 1 1 1 Replication terminator protein TrmB PF01978.19 gi|284166732|ref|YP_003405011.1| - 0.13 12.1 0.0 0.44 10.5 0.0 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_M50 PF02163.22 gi|284166733|ref|YP_003405012.1| - 5.6e-23 81.5 0.0 2e-22 79.7 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|284166733|ref|YP_003405012.1| - 1.2e-19 70.4 7.6 9.9e-07 29.0 0.6 3.4 2 1 1 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|284166733|ref|YP_003405012.1| - 7.3e-16 57.8 6.2 4.1e-10 39.4 1.0 3.4 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 gi|284166733|ref|YP_003405012.1| - 2.4e-07 31.0 1.3 0.00045 20.5 0.2 2.5 1 1 1 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 gi|284166733|ref|YP_003405012.1| - 2.1e-05 24.4 1.1 0.0048 16.8 0.1 3.1 2 1 1 3 3 3 1 Tricorn protease PDZ domain tRNA-synt_1f PF01921.18 gi|284166734|ref|YP_003405013.1| - 1.1e-101 340.4 0.0 1.5e-101 339.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|284166734|ref|YP_003405013.1| - 2.2e-09 36.5 0.0 3.4e-07 29.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|284166734|ref|YP_003405013.1| - 0.003 16.9 0.0 0.011 15.1 0.0 1.8 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|284166734|ref|YP_003405013.1| - 0.012 14.9 0.0 4 6.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.28 gi|284166735|ref|YP_003405014.1| - 9.9e-27 94.1 3.8 1.5e-26 93.5 3.8 1.3 1 0 0 1 1 1 1 Amino acid kinase family PGA_cap PF09587.10 gi|284166736|ref|YP_003405015.1| - 1.4e-64 218.0 0.0 1.9e-64 217.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap DUF1491 PF07372.12 gi|284166736|ref|YP_003405015.1| - 0.003 17.9 0.3 0.0081 16.5 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1491) Glyco_transf_4 PF13439.6 gi|284166736|ref|YP_003405015.1| - 0.012 15.6 0.1 0.049 13.6 0.1 2.0 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Antigen_Bd37 PF11641.8 gi|284166736|ref|YP_003405015.1| - 0.2 11.1 0.0 0.34 10.4 0.0 1.2 1 0 0 1 1 1 0 Glycosylphosphatidylinositol-anchored merozoite surface protein MoaE PF02391.17 gi|284166737|ref|YP_003405016.1| - 4e-24 85.1 0.8 7.3e-24 84.2 0.2 1.8 2 0 0 2 2 2 1 MoaE protein DUF3906 PF13046.6 gi|284166737|ref|YP_003405016.1| - 0.014 15.5 0.2 0.032 14.3 0.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3906) Peptidase_M50 PF02163.22 gi|284166739|ref|YP_003405018.1| - 1.1e-12 47.8 11.0 2.4e-07 30.3 0.6 2.4 1 1 1 2 2 2 2 Peptidase family M50 DUF2157 PF09925.9 gi|284166739|ref|YP_003405018.1| - 7.5 6.3 13.3 1.2 8.9 6.1 2.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) AIRS PF00586.24 gi|284166740|ref|YP_003405019.1| - 2.4e-18 66.5 2.2 5.6e-18 65.4 2.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|284166740|ref|YP_003405019.1| - 1.5e-13 51.2 0.5 2.2e-13 50.6 0.5 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S19e PF01090.19 gi|284166741|ref|YP_003405020.1| - 1.7e-45 154.1 0.0 1.9e-45 153.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.10 gi|284166741|ref|YP_003405020.1| - 0.039 13.9 1.2 0.11 12.5 0.2 2.2 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|284166741|ref|YP_003405020.1| - 0.054 13.8 0.0 0.2 12.0 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_45 PF14947.6 gi|284166741|ref|YP_003405020.1| - 0.076 13.0 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix dsDNA_bind PF01984.20 gi|284166742|ref|YP_003405021.1| - 1.4e-26 92.9 14.9 1.7e-26 92.7 14.9 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.27 gi|284166742|ref|YP_003405021.1| - 0.019 15.5 0.1 0.034 14.7 0.1 1.7 1 1 0 1 1 1 0 PCI domain cwf18 PF08315.12 gi|284166742|ref|YP_003405021.1| - 0.024 15.3 10.9 0.029 15.0 10.9 1.0 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor gp32 PF08804.10 gi|284166742|ref|YP_003405021.1| - 0.078 13.0 1.4 0.098 12.7 1.4 1.1 1 0 0 1 1 1 0 gp32 DNA binding protein like Phage_prot_Gp6 PF05133.14 gi|284166742|ref|YP_003405021.1| - 0.14 11.3 2.9 0.22 10.6 2.8 1.4 1 1 1 2 2 2 0 Phage portal protein, SPP1 Gp6-like Cluap1 PF10234.9 gi|284166742|ref|YP_003405021.1| - 0.31 10.4 8.8 0.21 11.0 7.7 1.3 1 1 0 1 1 1 0 Clusterin-associated protein-1 MSC PF09402.10 gi|284166742|ref|YP_003405021.1| - 0.31 10.4 5.3 0.34 10.3 5.3 1.0 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain Arg_decarbox_C PF17944.1 gi|284166742|ref|YP_003405021.1| - 2.1 9.0 0.0 2.1 9.0 0.0 2.7 1 1 1 2 2 2 0 Arginine decarboxylase C-terminal helical extension Asn_synthase PF00733.21 gi|284166743|ref|YP_003405022.1| - 7.2e-05 22.6 0.0 8.7e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|284166743|ref|YP_003405022.1| - 0.016 14.7 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|284166743|ref|YP_003405022.1| - 0.2 11.2 0.0 0.56 9.7 0.0 1.7 2 0 0 2 2 2 0 Diphthamide synthase HATPase_c PF02518.26 gi|284166744|ref|YP_003405023.1| - 3.8e-16 59.6 0.0 6.4e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|284166744|ref|YP_003405023.1| - 1.2e-14 54.2 4.6 6.3e-13 48.6 0.5 2.3 1 1 1 2 2 2 2 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|284166744|ref|YP_003405023.1| - 3.8e-08 33.2 0.5 9.1e-08 32.0 0.2 1.8 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|284166744|ref|YP_003405023.1| - 3.3e-05 23.8 0.0 6.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain LapA_dom PF06305.11 gi|284166744|ref|YP_003405023.1| - 0.45 10.4 0.0 0.45 10.4 0.0 2.5 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain tRNA-synt_His PF13393.6 gi|284166745|ref|YP_003405024.1| - 4.3e-51 174.0 0.2 5.3e-51 173.7 0.2 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|284166745|ref|YP_003405024.1| - 2.2e-11 43.7 0.1 4.6e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|284166745|ref|YP_003405024.1| - 1.9e-08 34.5 0.0 2.3e-08 34.2 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|284166745|ref|YP_003405024.1| - 0.12 11.8 0.0 0.28 10.6 0.0 1.6 1 1 0 1 1 1 0 tRNA synthetases class II core domain (F) TIP49_C PF17856.1 gi|284166746|ref|YP_003405025.1| - 0.097 12.8 0.2 0.14 12.3 0.2 1.4 1 1 0 1 1 1 0 TIP49 AAA-lid domain DoxD PF04173.13 gi|284166747|ref|YP_003405026.1| - 3.4e-06 27.1 6.2 2.9e-05 24.0 6.2 1.9 1 1 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|284166747|ref|YP_003405026.1| - 3.5e-06 27.5 9.8 3.5e-06 27.5 9.8 1.7 2 1 0 2 2 2 1 DoxX Sulfatase PF00884.23 gi|284166748|ref|YP_003405027.1| - 4.3e-50 170.8 0.1 6.6e-50 170.3 0.1 1.3 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|284166748|ref|YP_003405027.1| - 1.4e-11 44.5 0.0 2.6e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|284166748|ref|YP_003405027.1| - 1e-10 41.8 0.1 0.00016 21.4 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|284166748|ref|YP_003405027.1| - 0.00071 18.3 0.2 0.001 17.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|284166748|ref|YP_003405027.1| - 0.01 14.9 0.6 0.09 11.8 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) Rpn9_C PF18261.1 gi|284166748|ref|YP_003405027.1| - 0.27 10.8 2.1 0.53 9.9 2.1 1.4 1 0 0 1 1 1 0 Rpn9 C-terminal helix Prok-JAB PF14464.6 gi|284166749|ref|YP_003405028.1| - 4.4e-21 74.9 0.1 5.4e-21 74.5 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|284166749|ref|YP_003405028.1| - 3.6e-06 26.9 0.0 5.1e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.15 gi|284166749|ref|YP_003405028.1| - 0.25 11.3 0.0 0.35 10.8 0.0 1.2 1 0 0 1 1 1 0 RadC-like JAB domain Peripla_BP_2 PF01497.18 gi|284166750|ref|YP_003405029.1| - 1.7e-21 76.9 0.2 2.4e-21 76.4 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF883 PF05957.13 gi|284166750|ref|YP_003405029.1| - 0.065 13.8 0.1 0.16 12.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF2070 PF09843.9 gi|284166750|ref|YP_003405029.1| - 0.29 9.4 0.3 0.38 9.0 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) F420_oxidored PF03807.17 gi|284166751|ref|YP_003405030.1| - 4.4e-21 75.3 0.0 8.5e-21 74.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|284166751|ref|YP_003405030.1| - 1.3e-07 31.9 0.2 9.6e-07 29.1 0.0 2.1 2 1 1 3 3 3 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|284166751|ref|YP_003405030.1| - 3e-05 24.4 0.0 0.00026 21.4 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284166751|ref|YP_003405030.1| - 0.00016 21.9 0.0 0.0013 18.9 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|284166751|ref|YP_003405030.1| - 0.00037 20.2 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|284166751|ref|YP_003405030.1| - 0.0011 18.9 0.0 0.0019 18.2 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.6 gi|284166751|ref|YP_003405030.1| - 0.0012 18.8 0.2 0.0021 18.0 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|284166751|ref|YP_003405030.1| - 0.0042 17.0 0.0 0.0083 16.0 0.0 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KR PF08659.10 gi|284166751|ref|YP_003405030.1| - 0.012 15.6 0.1 0.036 14.0 0.0 1.7 2 0 0 2 2 2 0 KR domain PDH PF02153.17 gi|284166751|ref|YP_003405030.1| - 0.022 13.7 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase TrkA_N PF02254.18 gi|284166751|ref|YP_003405030.1| - 0.027 14.7 0.9 0.045 14.0 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain Bac_luciferase PF00296.20 gi|284166751|ref|YP_003405030.1| - 0.063 12.7 0.1 0.096 12.1 0.1 1.3 1 0 0 1 1 1 0 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.22 gi|284166751|ref|YP_003405030.1| - 0.079 13.8 0.0 0.2 12.5 0.0 1.6 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.20 gi|284166751|ref|YP_003405030.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GreA_GreB_N PF03449.15 gi|284166752|ref|YP_003405031.1| - 0.12 12.6 4.7 0.2 11.9 4.7 1.4 1 1 0 1 1 1 0 Transcription elongation factor, N-terminal Bac_luciferase PF00296.20 gi|284166753|ref|YP_003405032.1| - 4.6e-34 118.3 4.8 6e-34 117.9 4.8 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase GDPD PF03009.17 gi|284166754|ref|YP_003405033.1| - 2.7e-22 79.8 0.0 6e-22 78.6 0.0 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Hydrolase PF00702.26 gi|284166755|ref|YP_003405034.1| - 7.2e-11 42.8 0.6 1.2e-09 38.8 0.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|284166755|ref|YP_003405034.1| - 2.3e-08 34.4 0.0 6.5e-07 29.6 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284166755|ref|YP_003405034.1| - 2.8e-06 27.3 0.1 2.8e-06 27.3 0.1 2.5 3 0 0 3 3 3 1 HAD-hyrolase-like HAD PF12710.7 gi|284166755|ref|YP_003405034.1| - 0.00052 20.5 2.5 0.014 15.8 0.4 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase DUF3267 PF11667.8 gi|284166756|ref|YP_003405035.1| - 4e-08 33.5 0.1 4e-08 33.5 0.1 3.0 3 1 1 4 4 4 1 Putative zincin peptidase UPF0146 PF03686.13 gi|284166757|ref|YP_003405036.1| - 2.8e-33 114.5 0.1 3.3e-33 114.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Peptidase_M54 PF07998.11 gi|284166758|ref|YP_003405037.1| - 3.9e-22 79.2 0.0 4.9e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|284166758|ref|YP_003405037.1| - 5.9e-05 22.8 0.1 7.2e-05 22.5 0.1 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|284166758|ref|YP_003405037.1| - 0.00037 20.4 0.0 0.00042 20.2 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.6 gi|284166758|ref|YP_003405037.1| - 0.00049 20.1 0.0 0.00058 19.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|284166758|ref|YP_003405037.1| - 0.00077 19.7 0.1 0.00091 19.4 0.1 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 gi|284166758|ref|YP_003405037.1| - 0.0012 19.3 0.0 0.0016 19.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|284166758|ref|YP_003405037.1| - 0.0053 15.7 0.0 0.0073 15.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF4953 PF16313.5 gi|284166758|ref|YP_003405037.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Met-zincin Zincin_1 PF06262.11 gi|284166758|ref|YP_003405037.1| - 0.082 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Zincin-like metallopeptidase ABC_tran PF00005.27 gi|284166759|ref|YP_003405038.1| - 9.2e-42 142.8 0.0 8.7e-22 78.1 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|284166759|ref|YP_003405038.1| - 1.5e-14 53.9 4.6 0.0002 20.9 0.1 4.8 5 0 0 5 5 5 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|284166759|ref|YP_003405038.1| - 3.7e-12 45.9 1.4 7.6e-12 44.9 1.4 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|284166759|ref|YP_003405038.1| - 4.8e-11 43.0 3.0 0.12 12.1 0.2 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284166759|ref|YP_003405038.1| - 1.3e-07 32.2 0.6 0.0079 16.6 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.6 gi|284166759|ref|YP_003405038.1| - 2.2e-06 28.3 0.5 0.077 13.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|284166759|ref|YP_003405038.1| - 4.2e-06 27.1 0.1 0.0073 16.6 0.0 2.8 2 2 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|284166759|ref|YP_003405038.1| - 1.2e-05 25.3 0.0 0.15 12.0 0.0 3.1 2 1 1 3 3 3 2 Rad17 P-loop domain AAA PF00004.29 gi|284166759|ref|YP_003405038.1| - 1.8e-05 25.2 0.0 0.053 13.9 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|284166759|ref|YP_003405038.1| - 6.4e-05 22.8 0.0 0.069 12.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|284166759|ref|YP_003405038.1| - 9.6e-05 22.6 0.6 0.31 11.2 0.0 3.1 3 1 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|284166759|ref|YP_003405038.1| - 0.0001 22.6 0.0 0.61 10.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase RsgA_GTPase PF03193.16 gi|284166759|ref|YP_003405038.1| - 0.00037 20.4 0.0 0.68 9.8 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase Fer4 PF00037.27 gi|284166759|ref|YP_003405038.1| - 0.00057 19.6 1.6 0.00057 19.6 1.6 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_14 PF13173.6 gi|284166759|ref|YP_003405038.1| - 0.00069 19.6 0.1 2.6 8.1 0.0 3.7 3 1 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|284166759|ref|YP_003405038.1| - 0.0012 18.6 1.3 0.55 9.9 0.1 3.0 2 1 1 3 3 3 1 AAA ATPase domain Fer4_6 PF12837.7 gi|284166759|ref|YP_003405038.1| - 0.0012 18.8 12.0 0.0063 16.5 2.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|284166759|ref|YP_003405038.1| - 0.0018 18.0 0.4 1.4 8.7 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|284166759|ref|YP_003405038.1| - 0.0023 17.9 0.0 3 7.7 0.0 2.7 2 0 0 2 2 2 2 NACHT domain RuvB_N PF05496.12 gi|284166759|ref|YP_003405038.1| - 0.0045 16.7 0.3 1.8 8.3 0.1 3.0 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|284166759|ref|YP_003405038.1| - 0.0076 16.8 0.0 5 7.7 0.0 2.7 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|284166759|ref|YP_003405038.1| - 0.01 15.1 0.0 0.87 8.7 0.0 2.4 2 1 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.6 gi|284166759|ref|YP_003405038.1| - 0.017 15.3 0.3 5.4 7.2 0.0 3.3 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|284166759|ref|YP_003405038.1| - 0.023 14.8 0.3 0.61 10.2 0.1 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_2 PF12797.7 gi|284166759|ref|YP_003405038.1| - 0.036 14.2 1.1 0.036 14.2 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_25 PF13481.6 gi|284166759|ref|YP_003405038.1| - 0.043 13.4 1.9 19 4.8 0.0 3.6 4 0 0 4 4 4 0 AAA domain AAA_5 PF07728.14 gi|284166759|ref|YP_003405038.1| - 0.055 13.5 0.1 11 6.0 0.0 2.8 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|284166759|ref|YP_003405038.1| - 0.058 13.5 0.3 18 5.3 0.0 3.2 3 1 0 3 3 3 0 Helicase HerA, central domain Fer4_7 PF12838.7 gi|284166759|ref|YP_003405038.1| - 0.076 13.6 11.0 0.17 12.5 11.0 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_30 PF13604.6 gi|284166759|ref|YP_003405038.1| - 0.096 12.4 0.2 8.3 6.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain CLP1_P PF16575.5 gi|284166759|ref|YP_003405038.1| - 0.13 12.1 0.0 6.2 6.6 0.0 2.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|284166759|ref|YP_003405038.1| - 0.17 11.5 1.4 5.8 6.5 0.0 2.5 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|284166759|ref|YP_003405038.1| - 0.18 11.7 3.5 14 5.6 0.0 3.3 4 0 0 4 4 3 0 NTPase Fer4_10 PF13237.6 gi|284166759|ref|YP_003405038.1| - 0.33 11.1 12.2 0.62 10.2 1.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284166759|ref|YP_003405038.1| - 0.88 9.8 9.0 1.6 8.9 9.0 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284166759|ref|YP_003405038.1| - 1.2 9.4 10.9 2.5 8.4 10.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284166759|ref|YP_003405038.1| - 5.3 7.8 7.8 34 5.3 7.8 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|284166759|ref|YP_003405038.1| - 8.1 7.5 10.2 30 5.6 10.2 2.0 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain CbtB PF09489.10 gi|284166760|ref|YP_003405039.1| - 0.083 13.0 0.6 13 5.9 0.0 2.4 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) FixQ PF05545.11 gi|284166762|ref|YP_003405041.1| - 0.45 10.5 2.2 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ VWA PF00092.28 gi|284166763|ref|YP_003405042.1| - 3.3e-17 63.3 0.0 5.3e-14 52.9 0.0 2.6 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|284166763|ref|YP_003405042.1| - 3e-09 37.5 0.0 3.1e-06 27.8 0.0 2.6 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|284166763|ref|YP_003405042.1| - 2.9e-05 23.6 0.5 0.0046 16.4 0.1 2.3 2 0 0 2 2 2 2 VWA domain containing CoxE-like protein DUF2572 PF10833.8 gi|284166763|ref|YP_003405042.1| - 0.0013 18.5 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2572) CAF1A PF12253.8 gi|284166763|ref|YP_003405042.1| - 0.1 12.8 2.0 0.28 11.4 0.8 2.5 2 0 0 2 2 2 0 Chromatin assembly factor 1 subunit A CARDB PF07705.11 gi|284166764|ref|YP_003405043.1| - 1.1e-11 44.8 12.1 4e-06 27.0 0.3 3.3 3 0 0 3 3 3 2 CARDB FixG_C PF11614.8 gi|284166764|ref|YP_003405043.1| - 4.5e-05 23.7 5.0 0.54 10.5 0.1 3.9 2 1 1 3 3 3 2 IG-like fold at C-terminal of FixG, putative oxidoreductase ASH PF15780.5 gi|284166764|ref|YP_003405043.1| - 0.0076 16.4 3.7 1.2 9.3 0.5 2.9 2 1 0 2 2 2 2 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Big_3_5 PF16640.5 gi|284166764|ref|YP_003405043.1| - 0.008 16.3 12.5 0.22 11.7 1.4 3.8 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 3) DUF3992 PF13157.6 gi|284166764|ref|YP_003405043.1| - 0.0093 16.7 9.7 0.12 13.1 0.4 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF3992) DUF916 PF06030.12 gi|284166764|ref|YP_003405043.1| - 0.085 12.9 1.1 9.8 6.3 0.2 3.4 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF916) DUF3332 PF11810.8 gi|284166764|ref|YP_003405043.1| - 0.11 12.2 0.1 0.22 11.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3332) DUF2336 PF10098.9 gi|284166764|ref|YP_003405043.1| - 0.13 11.8 0.2 0.2 11.1 0.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) Peptidase_S24 PF00717.23 gi|284166765|ref|YP_003405044.1| - 1.2e-05 25.2 0.0 2.5e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like VirB8 PF04335.13 gi|284166765|ref|YP_003405044.1| - 0.018 14.9 0.1 0.043 13.6 0.1 1.7 1 0 0 1 1 1 0 VirB8 protein UL45 PF05473.12 gi|284166765|ref|YP_003405044.1| - 0.22 11.2 0.1 0.47 10.1 0.1 1.5 1 0 0 1 1 1 0 UL45 protein, carbohydrate-binding C-type lectin-like DUF5305 PF17231.2 gi|284166766|ref|YP_003405045.1| - 1.4e-53 181.6 0.3 2.7e-53 180.6 0.1 1.6 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF4131 PF13567.6 gi|284166766|ref|YP_003405045.1| - 0.15 11.7 0.1 0.47 10.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HTH_24 PF13412.6 gi|284166767|ref|YP_003405046.1| - 2.9e-06 26.7 0.0 4.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284166767|ref|YP_003405046.1| - 0.00071 19.4 0.0 0.00081 19.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|284166767|ref|YP_003405046.1| - 0.00084 19.2 0.0 0.0013 18.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|284166767|ref|YP_003405046.1| - 0.0011 18.6 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|284166767|ref|YP_003405046.1| - 0.0018 18.1 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284166767|ref|YP_003405046.1| - 0.0025 17.7 0.1 0.0033 17.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|284166767|ref|YP_003405046.1| - 0.0032 17.9 0.0 0.0045 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|284166767|ref|YP_003405046.1| - 0.017 14.9 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|284166767|ref|YP_003405046.1| - 0.021 15.0 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|284166767|ref|YP_003405046.1| - 0.024 14.6 0.0 0.63 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284166767|ref|YP_003405046.1| - 0.025 14.4 0.0 0.054 13.3 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284166767|ref|YP_003405046.1| - 0.027 14.5 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|284166767|ref|YP_003405046.1| - 0.033 14.1 0.1 0.088 12.8 0.1 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain PaaX PF07848.12 gi|284166767|ref|YP_003405046.1| - 0.038 14.2 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.20 gi|284166767|ref|YP_003405046.1| - 0.047 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|284166767|ref|YP_003405046.1| - 0.18 11.8 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation NAD_synthase PF02540.17 gi|284166769|ref|YP_003405048.1| - 3.6e-75 252.2 0.0 4.3e-75 251.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|284166769|ref|YP_003405048.1| - 4.8e-07 28.9 0.0 0.0023 16.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|284166769|ref|YP_003405048.1| - 0.00012 21.7 0.0 0.00076 19.0 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC T2SSE PF00437.20 gi|284166770|ref|YP_003405049.1| - 4.1e-12 45.7 0.0 6.9e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|284166770|ref|YP_003405049.1| - 0.00029 21.3 0.0 0.00078 19.9 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|284166770|ref|YP_003405049.1| - 0.003 17.3 0.0 0.0074 16.0 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|284166770|ref|YP_003405049.1| - 0.0047 17.1 0.1 0.073 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain KH_1 PF00013.29 gi|284166770|ref|YP_003405049.1| - 0.0051 16.6 0.2 0.017 14.9 0.2 1.9 1 0 0 1 1 1 1 KH domain AAA_30 PF13604.6 gi|284166770|ref|YP_003405049.1| - 0.0068 16.2 0.1 0.055 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain KH_2 PF07650.17 gi|284166770|ref|YP_003405049.1| - 0.01 15.6 1.0 0.037 13.8 1.1 1.8 2 0 0 2 2 1 0 KH domain AAA_25 PF13481.6 gi|284166770|ref|YP_003405049.1| - 0.011 15.3 0.1 0.04 13.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|284166770|ref|YP_003405049.1| - 0.013 16.0 0.4 0.037 14.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|284166770|ref|YP_003405049.1| - 0.014 15.2 0.0 0.04 13.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|284166770|ref|YP_003405049.1| - 0.016 15.1 0.0 0.046 13.6 0.0 1.8 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.14 gi|284166770|ref|YP_003405049.1| - 0.024 14.6 0.0 0.055 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|284166770|ref|YP_003405049.1| - 0.026 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|284166770|ref|YP_003405049.1| - 0.03 13.6 0.0 0.065 12.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|284166770|ref|YP_003405049.1| - 0.033 13.5 0.0 0.08 12.3 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_28 PF13521.6 gi|284166770|ref|YP_003405049.1| - 0.034 14.4 0.0 0.28 11.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|284166770|ref|YP_003405049.1| - 0.035 13.6 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Viral_helicase1 PF01443.18 gi|284166770|ref|YP_003405049.1| - 0.036 13.8 0.0 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KH_5 PF13184.6 gi|284166770|ref|YP_003405049.1| - 0.044 13.9 0.3 0.11 12.6 0.3 1.7 1 0 0 1 1 1 0 NusA-like KH domain AAA_17 PF13207.6 gi|284166770|ref|YP_003405049.1| - 0.052 14.0 0.2 2.2 8.7 0.0 3.2 2 1 2 4 4 4 0 AAA domain AAA PF00004.29 gi|284166770|ref|YP_003405049.1| - 0.058 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|284166770|ref|YP_003405049.1| - 0.075 13.0 0.0 0.21 11.6 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|284166770|ref|YP_003405049.1| - 0.087 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 gi|284166770|ref|YP_003405049.1| - 0.088 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.10 gi|284166770|ref|YP_003405049.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ZT_dimer PF16916.5 gi|284166770|ref|YP_003405049.1| - 0.092 12.9 0.3 0.36 11.0 0.0 2.2 2 0 0 2 2 1 0 Dimerisation domain of Zinc Transporter ABC_tran PF00005.27 gi|284166770|ref|YP_003405049.1| - 0.11 13.1 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 ABC transporter KH_4 PF13083.6 gi|284166770|ref|YP_003405049.1| - 0.13 12.2 0.7 0.56 10.1 0.5 2.3 2 0 0 2 2 1 0 KH domain Rad17 PF03215.15 gi|284166770|ref|YP_003405049.1| - 0.14 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|284166770|ref|YP_003405049.1| - 0.15 12.4 0.0 0.43 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|284166770|ref|YP_003405049.1| - 0.15 12.5 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|284166770|ref|YP_003405049.1| - 0.18 11.0 0.0 0.36 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Peptidase_M20 PF01546.28 gi|284166771|ref|YP_003405050.1| - 4.4e-27 95.1 1.2 8.2e-27 94.3 1.2 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284166771|ref|YP_003405050.1| - 1.9e-16 59.9 0.1 4.2e-16 58.8 0.1 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain RtxA PF07634.11 gi|284166771|ref|YP_003405050.1| - 0.045 14.3 2.5 0.1 13.1 1.0 2.5 2 0 0 2 2 2 0 RtxA repeat Glycos_transf_1 PF00534.20 gi|284166772|ref|YP_003405051.1| - 1.6e-25 89.7 0.0 2.5e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166772|ref|YP_003405051.1| - 3.7e-22 79.2 0.0 9.8e-22 77.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284166772|ref|YP_003405051.1| - 1.6e-15 57.5 0.1 3.2e-15 56.5 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284166772|ref|YP_003405051.1| - 3e-10 40.8 0.0 1.1e-09 39.0 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|284166772|ref|YP_003405051.1| - 2e-07 31.1 0.1 2.9e-06 27.3 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|284166772|ref|YP_003405051.1| - 4.8e-06 26.9 0.1 1.2e-05 25.6 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284166773|ref|YP_003405052.1| - 1.4e-17 64.4 0.0 2e-16 60.6 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|284166773|ref|YP_003405052.1| - 1.3e-16 60.6 0.0 7.5e-16 58.1 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284166773|ref|YP_003405052.1| - 5e-14 52.7 0.0 7.7e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284166773|ref|YP_003405052.1| - 1.3e-07 32.2 0.2 2.3e-07 31.4 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|284166773|ref|YP_003405052.1| - 0.00011 22.6 0.1 0.00028 21.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 MCPVI PF02993.14 gi|284166774|ref|YP_003405053.1| - 0.053 13.4 0.1 0.12 12.2 0.1 1.6 1 1 0 2 2 2 0 Minor capsid protein VI Metalloenzyme PF01676.18 gi|284166774|ref|YP_003405053.1| - 0.18 11.1 0.0 0.42 9.9 0.0 1.5 2 0 0 2 2 2 0 Metalloenzyme superfamily Sulfatase PF00884.23 gi|284166775|ref|YP_003405054.1| - 2.1e-47 162.0 0.0 2.9e-47 161.6 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|284166775|ref|YP_003405054.1| - 4.2e-13 49.6 0.2 5.7e-06 26.2 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|284166775|ref|YP_003405054.1| - 0.11 11.5 0.6 0.19 10.7 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) LPG_synthase_TM PF03706.13 gi|284166776|ref|YP_003405055.1| - 2.6e-40 138.9 45.7 3.2e-40 138.6 45.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region YdjM PF04307.14 gi|284166777|ref|YP_003405056.1| - 2.2e-15 56.4 10.5 7.2e-15 54.7 10.5 1.7 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase YdjM PF04307.14 gi|284166778|ref|YP_003405057.1| - 8.1e-15 54.5 10.7 1.3e-14 53.9 10.7 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase NCE101 PF11654.8 gi|284166778|ref|YP_003405057.1| - 0.75 9.5 2.4 15 5.3 0.0 2.7 3 0 0 3 3 3 0 Non-classical export protein 1 SNARE_assoc PF09335.11 gi|284166779|ref|YP_003405058.1| - 3.4e-12 46.9 3.7 3.4e-12 46.9 3.7 1.4 2 0 0 2 2 2 1 SNARE associated Golgi protein PMT_2 PF13231.6 gi|284166780|ref|YP_003405059.1| - 5.2e-20 72.3 9.8 5.2e-20 72.3 9.8 2.7 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|284166780|ref|YP_003405059.1| - 2.7e-07 30.4 6.1 6.7e-07 29.1 6.1 1.6 1 0 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2723 PF11028.8 gi|284166780|ref|YP_003405059.1| - 8.9e-06 25.7 1.3 8.9e-06 25.7 1.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2723) TMEM72 PF16054.5 gi|284166780|ref|YP_003405059.1| - 6.8 6.3 7.2 1.9 8.2 2.6 2.2 2 0 0 2 2 2 0 Transmembrane protein family 72 Mannosyl_trans4 PF15971.5 gi|284166781|ref|YP_003405060.1| - 1.4e-74 249.4 14.5 1.4e-74 249.4 14.5 1.8 2 0 0 2 2 2 1 DolP-mannose mannosyltransferase DUF3357 PF11837.8 gi|284166781|ref|YP_003405060.1| - 1.8 9.1 0.0 1.8 9.1 0.0 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF3357) NapE PF06796.11 gi|284166781|ref|YP_003405060.1| - 3.9 7.1 6.1 0.45 10.1 0.3 2.4 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE Epimerase PF01370.21 gi|284166782|ref|YP_003405061.1| - 5.8e-41 140.5 0.0 7.3e-41 140.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284166782|ref|YP_003405061.1| - 7.4e-25 88.0 0.0 1.3e-24 87.2 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284166782|ref|YP_003405061.1| - 1.1e-18 67.3 0.0 1.3e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|284166782|ref|YP_003405061.1| - 4.7e-15 56.0 0.0 1.9e-14 53.9 0.0 1.8 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|284166782|ref|YP_003405061.1| - 1.5e-11 44.0 0.0 2e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|284166782|ref|YP_003405061.1| - 1e-09 38.0 0.5 3.3e-07 29.7 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|284166782|ref|YP_003405061.1| - 5.8e-06 25.7 0.3 4.2e-05 22.8 0.3 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|284166782|ref|YP_003405061.1| - 0.0074 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|284166782|ref|YP_003405061.1| - 0.015 14.7 0.0 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase KR PF08659.10 gi|284166782|ref|YP_003405061.1| - 0.022 14.7 1.5 1.1 9.1 0.1 2.5 2 1 0 2 2 2 0 KR domain FtsJ PF01728.19 gi|284166782|ref|YP_003405061.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Glyco_trans_4_2 PF13477.6 gi|284166782|ref|YP_003405061.1| - 0.14 12.2 0.0 0.44 10.6 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase 4-like UbiA PF01040.18 gi|284166783|ref|YP_003405062.1| - 1.5e-28 99.8 15.7 1.5e-28 99.8 15.7 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family PrgI PF12666.7 gi|284166783|ref|YP_003405062.1| - 0.011 16.4 1.2 0.011 16.4 1.2 4.1 3 1 1 4 4 4 0 PrgI family protein DUF2417 PF10329.9 gi|284166783|ref|YP_003405062.1| - 0.034 13.6 2.3 0.063 12.7 2.3 1.4 1 0 0 1 1 1 0 Region of unknown function (DUF2417) Gemini_mov PF01708.16 gi|284166783|ref|YP_003405062.1| - 1.8 8.4 4.2 2 8.2 0.0 2.8 2 1 0 2 2 2 0 Geminivirus putative movement protein Bac_export_2 PF01312.19 gi|284166783|ref|YP_003405062.1| - 2 7.6 5.9 7 5.7 5.9 1.9 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family PHP_C PF13263.6 gi|284166784|ref|YP_003405063.1| - 7.8e-17 60.8 0.9 2e-16 59.5 0.9 1.8 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|284166784|ref|YP_003405063.1| - 1.5e-07 31.9 0.0 1.5e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 PHP domain LPG_synthase_TM PF03706.13 gi|284166785|ref|YP_003405064.1| - 3.6e-40 138.4 41.5 4.2e-40 138.2 41.5 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region TMEMspv1-c74-12 PF11044.8 gi|284166785|ref|YP_003405064.1| - 0.29 11.2 0.2 0.29 11.2 0.2 3.0 3 1 1 4 4 4 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein Arylsulfotrans PF05935.11 gi|284166786|ref|YP_003405065.1| - 5.1e-09 35.5 3.5 4.5e-07 29.1 2.3 3.1 1 1 2 3 3 3 3 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|284166786|ref|YP_003405065.1| - 4.5e-06 26.3 2.1 0.00026 20.4 1.2 2.7 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|284166786|ref|YP_003405065.1| - 0.016 15.2 5.5 0.27 11.3 0.0 3.7 4 0 0 4 4 4 0 NHL repeat Usp PF00582.26 gi|284166789|ref|YP_003405068.1| - 5.1e-62 208.5 12.9 3.7e-32 111.8 0.3 3.0 2 1 1 3 3 3 3 Universal stress protein family Amidohydro_1 PF01979.20 gi|284166789|ref|YP_003405068.1| - 0.0056 16.0 0.1 0.0056 16.0 0.1 1.8 3 0 0 3 3 3 1 Amidohydrolase family AP_endonuc_2 PF01261.24 gi|284166789|ref|YP_003405068.1| - 0.03 13.8 2.3 3.1 7.2 0.2 2.2 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Acetyltransf_1 PF00583.25 gi|284166789|ref|YP_003405068.1| - 0.034 14.4 0.6 3.3 8.0 0.1 2.9 2 1 0 3 3 3 0 Acetyltransferase (GNAT) family AnmK PF03702.14 gi|284166789|ref|YP_003405068.1| - 0.052 12.6 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Anhydro-N-acetylmuramic acid kinase FR47 PF08445.10 gi|284166789|ref|YP_003405068.1| - 0.069 13.1 0.3 0.6 10.1 0.0 2.6 3 1 0 3 3 3 0 FR47-like protein Acetyltransf_10 PF13673.7 gi|284166789|ref|YP_003405068.1| - 0.17 11.8 0.0 0.93 9.4 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Yip1 PF04893.17 gi|284166790|ref|YP_003405069.1| - 0.083 12.6 24.2 0.11 12.2 24.2 1.2 1 0 0 1 1 1 0 Yip1 domain Proton_antipo_N PF00662.20 gi|284166790|ref|YP_003405069.1| - 0.2 11.7 0.5 0.2 11.7 0.5 2.4 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Peptidase_M32 PF02074.15 gi|284166791|ref|YP_003405070.1| - 1.2e-178 594.8 0.0 1.4e-178 594.7 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase ACOX PF01756.19 gi|284166791|ref|YP_003405070.1| - 0.099 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Acyl-CoA oxidase adh_short PF00106.25 gi|284166794|ref|YP_003405073.1| - 9.8e-50 168.7 0.1 1.2e-49 168.4 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284166794|ref|YP_003405073.1| - 6.2e-40 137.2 1.0 8.3e-40 136.8 1.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284166794|ref|YP_003405073.1| - 2.3e-13 50.5 0.1 3.1e-13 50.0 0.1 1.1 1 0 0 1 1 1 1 KR domain ADH_zinc_N PF00107.26 gi|284166794|ref|YP_003405073.1| - 0.00014 21.8 0.4 0.00034 20.6 0.4 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.6 gi|284166794|ref|YP_003405073.1| - 0.0032 17.4 3.5 0.0052 16.7 3.5 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|284166794|ref|YP_003405073.1| - 0.004 16.3 0.0 0.0066 15.6 0.0 1.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|284166794|ref|YP_003405073.1| - 0.0064 16.0 0.3 0.013 15.0 0.3 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HEM4 PF02602.15 gi|284166794|ref|YP_003405073.1| - 0.013 14.8 0.1 0.021 14.2 0.1 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD IlvN PF07991.12 gi|284166794|ref|YP_003405073.1| - 0.027 14.1 0.4 1.1 8.8 0.0 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|284166794|ref|YP_003405073.1| - 0.036 14.7 0.1 0.085 13.4 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|284166794|ref|YP_003405073.1| - 0.078 12.8 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|284166794|ref|YP_003405073.1| - 0.15 11.4 0.1 0.2 11.0 0.1 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Thioredoxin PF00085.20 gi|284166796|ref|YP_003405075.1| - 4.3e-21 74.8 0.0 5.1e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|284166796|ref|YP_003405075.1| - 1.5e-07 31.8 0.3 1.5e-06 28.6 0.3 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|284166796|ref|YP_003405075.1| - 8.6e-06 26.0 0.0 0.0057 16.9 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|284166796|ref|YP_003405075.1| - 0.00012 22.0 0.0 0.00013 21.9 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|284166796|ref|YP_003405075.1| - 0.00032 20.5 0.0 0.0004 20.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|284166796|ref|YP_003405075.1| - 0.00087 19.7 0.1 0.001 19.4 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_3 PF13192.6 gi|284166796|ref|YP_003405075.1| - 0.00099 19.1 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|284166796|ref|YP_003405075.1| - 0.0012 18.8 0.1 0.0029 17.5 0.1 1.5 1 1 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284166796|ref|YP_003405075.1| - 0.0021 17.8 0.4 0.32 10.7 0.0 2.0 1 1 1 2 2 2 2 Redoxin Thioredoxin_5 PF13743.6 gi|284166796|ref|YP_003405075.1| - 0.0028 17.3 0.1 0.0032 17.2 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.12 gi|284166796|ref|YP_003405075.1| - 0.0082 15.9 0.0 0.0092 15.7 0.0 1.1 1 0 0 1 1 1 1 KaiB domain DSBA PF01323.20 gi|284166796|ref|YP_003405075.1| - 0.0091 15.8 0.2 0.15 11.8 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Glutaredoxin PF00462.24 gi|284166796|ref|YP_003405075.1| - 0.017 15.3 0.1 0.032 14.4 0.0 1.5 1 1 1 2 2 2 0 Glutaredoxin Sec61_beta PF03911.16 gi|284166797|ref|YP_003405076.1| - 4.6e-18 65.0 0.2 6.1e-18 64.6 0.2 1.2 1 0 0 1 1 1 1 Sec61beta family Glyoxalase PF00903.25 gi|284166798|ref|YP_003405077.1| - 5.7e-16 58.9 0.0 4.8e-07 30.0 0.0 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284166798|ref|YP_003405077.1| - 5.7e-06 27.1 2.3 0.0032 18.2 0.1 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284166798|ref|YP_003405077.1| - 0.0049 17.0 0.6 0.11 12.7 0.2 2.6 2 0 0 2 2 2 1 Glyoxalase-like domain CppA_N PF14506.6 gi|284166798|ref|YP_003405077.1| - 0.0067 16.5 0.0 0.067 13.3 0.0 2.0 2 0 0 2 2 2 1 CppA N-terminal Glyoxalase_4 PF13669.6 gi|284166798|ref|YP_003405077.1| - 0.12 12.6 0.1 36 4.7 0.0 3.4 2 2 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SNO PF01174.19 gi|284166799|ref|YP_003405078.1| - 2.2e-48 164.6 0.0 2.6e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|284166799|ref|YP_003405078.1| - 1.7e-09 37.6 0.0 3.1e-09 36.7 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|284166799|ref|YP_003405078.1| - 0.0016 18.1 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 BPL_N PF09825.9 gi|284166799|ref|YP_003405078.1| - 0.0036 16.4 0.0 0.022 13.8 0.0 1.9 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal DJ-1_PfpI PF01965.24 gi|284166799|ref|YP_003405078.1| - 0.0059 16.4 0.1 0.0097 15.7 0.1 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|284166799|ref|YP_003405078.1| - 0.019 14.8 0.0 0.11 12.2 0.0 1.9 1 1 0 1 1 1 0 Glutamine amidotransferase class-I Methyltransf_25 PF13649.6 gi|284166800|ref|YP_003405079.1| - 1.2e-11 45.2 0.0 2e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284166800|ref|YP_003405079.1| - 2.8e-09 37.5 0.0 4.4e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166800|ref|YP_003405079.1| - 7.1e-07 29.2 0.0 8.5e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|284166800|ref|YP_003405079.1| - 6.2e-06 25.9 0.0 9.5e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|284166800|ref|YP_003405079.1| - 0.00021 21.1 0.0 0.00026 20.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284166800|ref|YP_003405079.1| - 0.011 16.4 0.1 0.018 15.7 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ferredoxin_N PF16947.5 gi|284166800|ref|YP_003405079.1| - 0.047 13.8 2.2 0.13 12.4 2.2 1.7 1 0 0 1 1 1 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding CSD PF00313.22 gi|284166801|ref|YP_003405080.1| - 3.5e-19 68.4 0.3 3.8e-19 68.3 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|284166801|ref|YP_003405080.1| - 0.027 14.2 3.0 0.036 13.7 3.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain DNase-RNase PF02577.14 gi|284166802|ref|YP_003405081.1| - 4.3e-37 126.6 0.0 4.8e-37 126.5 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease PRA-PH PF01503.17 gi|284166803|ref|YP_003405082.1| - 3.4e-17 62.7 4.3 3.7e-17 62.5 4.3 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|284166803|ref|YP_003405082.1| - 0.0008 19.5 4.8 0.0014 18.8 4.8 1.4 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Tetrabrachion PF11401.8 gi|284166803|ref|YP_003405082.1| - 0.087 12.8 0.2 3 7.9 0.0 2.3 2 0 0 2 2 2 0 Tetrabrachion DUF3839 PF12943.7 gi|284166803|ref|YP_003405082.1| - 0.11 12.0 0.1 0.11 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) DUF4129 PF13559.6 gi|284166804|ref|YP_003405083.1| - 1.2e-08 35.1 12.3 1.2e-08 35.1 12.3 4.0 3 1 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4198 PF10670.9 gi|284166804|ref|YP_003405083.1| - 0.00056 20.3 6.4 0.2 12.0 0.4 3.3 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) DUF2807 PF10988.8 gi|284166804|ref|YP_003405083.1| - 0.0013 18.6 0.8 1.5 8.6 0.3 2.4 1 1 1 2 2 2 2 Putative auto-transporter adhesin, head GIN domain Phage_holin_3_6 PF07332.11 gi|284166805|ref|YP_003405084.1| - 0.11 12.5 12.6 0.21 11.6 12.6 1.4 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF202 PF02656.15 gi|284166805|ref|YP_003405084.1| - 3.4 8.2 8.1 6.1 7.4 8.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF58 PF01882.18 gi|284166806|ref|YP_003405085.1| - 1.6e-17 63.6 0.3 7.3e-17 61.4 0.1 2.3 2 1 1 3 3 3 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|284166806|ref|YP_003405085.1| - 3.1e-07 30.6 4.8 4.9e-07 30.0 0.1 3.1 3 1 0 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|284166806|ref|YP_003405085.1| - 9.1e-05 22.6 0.3 0.0007 19.8 0.0 2.5 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|284166806|ref|YP_003405085.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Transglut_C PF00927.22 gi|284166806|ref|YP_003405085.1| - 0.18 11.9 0.0 0.59 10.3 0.0 1.8 1 1 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain AAA_3 PF07726.11 gi|284166808|ref|YP_003405087.1| - 8.9e-63 210.0 0.0 1.4e-62 209.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284166808|ref|YP_003405087.1| - 1.5e-16 60.7 0.0 5.5e-16 58.8 0.0 2.0 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|284166808|ref|YP_003405087.1| - 1.4e-15 56.9 3.4 1.4e-15 56.9 3.4 2.2 2 0 0 2 2 2 1 AAA lid domain AAA PF00004.29 gi|284166808|ref|YP_003405087.1| - 1.1e-06 29.1 0.0 9.3e-06 26.1 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284166808|ref|YP_003405087.1| - 1.1e-05 25.2 0.0 9e-05 22.2 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|284166808|ref|YP_003405087.1| - 1.3e-05 24.4 0.0 2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|284166808|ref|YP_003405087.1| - 0.00026 20.8 0.0 0.0041 16.9 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|284166808|ref|YP_003405087.1| - 0.011 15.2 0.1 2 7.7 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_lid_8 PF17868.1 gi|284166808|ref|YP_003405087.1| - 0.18 11.7 0.1 0.33 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA lid domain DUF326 PF03860.16 gi|284166809|ref|YP_003405088.1| - 2.9e-09 36.6 49.3 0.0017 18.3 7.9 4.7 4 1 0 4 4 4 4 Domain of Unknown Function (DUF326) SPACA9 PF15120.6 gi|284166809|ref|YP_003405088.1| - 0.1 12.4 0.3 1.1 9.0 0.0 2.0 1 1 1 2 2 2 0 Sperm acrosome-associated protein 9 DUF5518 PF17647.1 gi|284166811|ref|YP_003405090.1| - 1.4e-15 57.5 47.6 1.7e-15 57.2 47.6 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) NOG1_N PF17835.1 gi|284166812|ref|YP_003405091.1| - 2.2e-44 151.3 0.4 3.5e-44 150.6 0.4 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|284166812|ref|YP_003405091.1| - 8.9e-23 79.8 0.0 2e-22 78.7 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|284166812|ref|YP_003405091.1| - 8.4e-19 67.7 0.0 1.6e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|284166812|ref|YP_003405091.1| - 1.3e-09 37.8 0.0 2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|284166812|ref|YP_003405091.1| - 0.00026 21.1 0.5 1.4 8.9 0.0 3.1 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|284166812|ref|YP_003405091.1| - 0.0018 18.2 0.0 0.006 16.5 0.0 1.9 1 1 0 1 1 1 1 RsgA GTPase APP_E2 PF12925.7 gi|284166812|ref|YP_003405091.1| - 0.017 14.8 0.6 0.032 14.0 0.4 1.4 1 1 0 1 1 1 0 E2 domain of amyloid precursor protein MMR_HSR1_Xtn PF16897.5 gi|284166812|ref|YP_003405091.1| - 0.039 14.0 0.1 0.097 12.7 0.1 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_16 PF13191.6 gi|284166812|ref|YP_003405091.1| - 0.055 13.8 0.1 0.43 10.9 0.0 2.5 1 1 0 2 2 2 0 AAA ATPase domain Innexin PF00876.18 gi|284166813|ref|YP_003405092.1| - 0.037 13.3 0.0 0.037 13.3 0.0 1.1 1 0 0 1 1 1 0 Innexin Arch_flagellin PF01917.16 gi|284166814|ref|YP_003405093.1| - 2.1e-08 34.5 0.9 2.1e-08 34.5 0.9 2.3 2 1 0 2 2 2 1 Archaebacterial flagellin Big_2 PF02368.18 gi|284166814|ref|YP_003405093.1| - 0.00024 20.9 1.9 0.00079 19.3 1.9 1.9 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 2) Big_1 PF02369.16 gi|284166814|ref|YP_003405093.1| - 0.0029 17.6 4.2 0.0083 16.1 4.2 1.8 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) Neocarzinostat PF00960.18 gi|284166814|ref|YP_003405093.1| - 0.024 14.6 1.0 1 9.4 0.0 2.7 2 0 0 2 2 2 0 Neocarzinostatin family DUF389 PF04087.14 gi|284166815|ref|YP_003405094.1| - 4e-35 120.9 17.5 4e-35 120.9 17.5 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Rhamnogal_lyase PF06045.11 gi|284166815|ref|YP_003405094.1| - 0.056 12.9 0.0 0.085 12.3 0.0 1.2 1 0 0 1 1 1 0 Rhamnogalacturonate lyase family DUF3290 PF11694.8 gi|284166815|ref|YP_003405094.1| - 0.11 12.5 0.1 0.4 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF1189 PF06691.11 gi|284166815|ref|YP_003405094.1| - 0.14 11.7 0.0 7.1 6.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1189) MMR_HSR1 PF01926.23 gi|284166816|ref|YP_003405095.1| - 9.4e-19 67.6 0.0 1.6e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|284166816|ref|YP_003405095.1| - 6e-13 48.6 0.4 1e-11 44.6 0.4 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|284166816|ref|YP_003405095.1| - 9.5e-06 25.3 0.0 0.00077 19.0 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|284166816|ref|YP_003405095.1| - 0.0002 21.3 0.2 0.027 14.4 0.1 2.5 2 1 0 2 2 2 1 RsgA GTPase AIG1 PF04548.16 gi|284166816|ref|YP_003405095.1| - 0.00036 19.9 0.0 0.00053 19.4 0.0 1.3 1 0 0 1 1 1 1 AIG1 family Dynamin_N PF00350.23 gi|284166816|ref|YP_003405095.1| - 0.002 18.2 0.1 0.027 14.5 0.1 2.1 1 1 1 2 2 2 1 Dynamin family Roc PF08477.13 gi|284166816|ref|YP_003405095.1| - 0.002 18.3 0.1 0.0057 16.9 0.0 1.8 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase ATP_bind_1 PF03029.17 gi|284166816|ref|YP_003405095.1| - 0.0045 16.8 0.3 0.75 9.5 0.0 2.9 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein TIP49 PF06068.13 gi|284166816|ref|YP_003405095.1| - 0.0048 16.2 0.1 0.0066 15.7 0.1 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain ABC_tran PF00005.27 gi|284166816|ref|YP_003405095.1| - 0.0073 16.8 0.0 0.0095 16.5 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Ras PF00071.22 gi|284166816|ref|YP_003405095.1| - 0.0091 15.6 0.1 0.027 14.1 0.0 1.8 2 0 0 2 2 2 1 Ras family AAA_21 PF13304.6 gi|284166816|ref|YP_003405095.1| - 0.031 14.1 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Arf PF00025.21 gi|284166816|ref|YP_003405095.1| - 0.037 13.5 0.1 0.22 11.0 0.1 2.0 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_22 PF13401.6 gi|284166816|ref|YP_003405095.1| - 0.071 13.4 0.2 0.58 10.4 0.1 2.5 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|284166816|ref|YP_003405095.1| - 0.083 13.4 0.0 0.17 12.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284166816|ref|YP_003405095.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Acetyltransf_10 PF13673.7 gi|284166817|ref|YP_003405096.1| - 9e-15 54.7 0.0 1.1e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284166817|ref|YP_003405096.1| - 2.9e-14 53.3 0.0 3.5e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284166817|ref|YP_003405096.1| - 1.6e-13 50.9 0.0 2.3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166817|ref|YP_003405096.1| - 1.5e-08 34.8 0.0 2e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284166817|ref|YP_003405096.1| - 4.3e-08 33.9 0.0 5.3e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166817|ref|YP_003405096.1| - 1.9e-07 31.0 0.0 3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|284166817|ref|YP_003405096.1| - 0.0019 18.3 0.0 0.0032 17.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284166817|ref|YP_003405096.1| - 0.095 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NodA PF02474.15 gi|284166817|ref|YP_003405096.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 1 0 1 1 1 0 Nodulation protein A (NodA) Acetyltransf_13 PF13880.6 gi|284166817|ref|YP_003405096.1| - 0.16 11.9 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Polysacc_deac_1 PF01522.21 gi|284166818|ref|YP_003405097.1| - 5.1e-12 45.8 0.0 3.9e-08 33.2 0.1 2.3 2 0 0 2 2 2 2 Polysaccharide deacetylase PGF-CTERM PF18204.1 gi|284166818|ref|YP_003405097.1| - 0.002 18.0 0.4 0.002 18.0 0.4 2.3 2 0 0 2 2 2 1 PGF-CTERM motif DUF2334 PF10096.9 gi|284166818|ref|YP_003405097.1| - 0.089 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) 2-Hacid_dh_C PF02826.19 gi|284166819|ref|YP_003405098.1| - 2.5e-53 180.1 0.0 3.4e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|284166819|ref|YP_003405098.1| - 8.3e-07 28.7 0.0 1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|284166819|ref|YP_003405098.1| - 0.005 16.9 0.5 0.034 14.2 0.1 2.1 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|284166819|ref|YP_003405098.1| - 0.0052 17.3 0.0 0.012 16.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|284166819|ref|YP_003405098.1| - 0.0094 16.5 0.1 0.04 14.5 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Nup35_RRM_2 PF14605.6 gi|284166819|ref|YP_003405098.1| - 0.011 15.7 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif NAD_binding_2 PF03446.15 gi|284166819|ref|YP_003405098.1| - 0.02 15.1 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DpaA_N PF16924.5 gi|284166819|ref|YP_003405098.1| - 0.029 14.4 0.0 0.078 13.1 0.0 1.6 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain IlvN PF07991.12 gi|284166819|ref|YP_003405098.1| - 0.059 12.9 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF4440 PF14534.6 gi|284166819|ref|YP_003405098.1| - 0.1 13.0 0.5 0.35 11.3 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4440) 3HCDH_N PF02737.18 gi|284166819|ref|YP_003405098.1| - 0.12 12.3 0.6 0.25 11.2 0.4 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IF-2B PF01008.17 gi|284166820|ref|YP_003405099.1| - 3.4e-44 151.2 0.2 4.2e-44 150.8 0.2 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|284166820|ref|YP_003405099.1| - 9.7e-08 32.1 0.6 9.7e-08 32.1 0.6 2.0 2 0 0 2 2 2 1 NUDIX domain Metallophos_2 PF12850.7 gi|284166821|ref|YP_003405100.1| - 7.2e-28 97.8 1.6 8.7e-28 97.6 1.6 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284166821|ref|YP_003405100.1| - 0.0048 17.4 1.8 0.019 15.5 0.2 1.9 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase RHH_1 PF01402.21 gi|284166822|ref|YP_003405101.1| - 2.1e-05 24.2 0.0 5.9e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|284166822|ref|YP_003405101.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix domain Nramp PF01566.18 gi|284166823|ref|YP_003405102.1| - 6.8e-96 321.4 24.7 8.3e-96 321.1 24.7 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Hydantoinase_A PF01968.18 gi|284166824|ref|YP_003405103.1| - 2e-100 335.8 13.0 3e-100 335.3 5.8 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|284166824|ref|YP_003405103.1| - 3.8e-51 173.3 1.7 4e-50 170.0 0.0 3.1 3 0 0 3 3 3 1 Hydantoinase/oxoprolinase N-terminal region TPR_9 PF13371.6 gi|284166824|ref|YP_003405103.1| - 0.83 9.8 6.3 0.33 11.1 1.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Hydantoinase_B PF02538.14 gi|284166825|ref|YP_003405104.1| - 7.9e-206 684.4 5.8 9e-206 684.3 5.8 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Amdase PF17645.1 gi|284166826|ref|YP_003405105.1| - 7.8e-35 120.5 0.8 9.9e-35 120.1 0.8 1.1 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|284166826|ref|YP_003405105.1| - 9.6e-15 55.0 0.0 1.2e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase AroM PF07302.11 gi|284166826|ref|YP_003405105.1| - 0.002 17.6 0.0 0.43 9.9 0.0 2.5 1 1 1 2 2 2 2 AroM protein ThiP_synth PF10120.9 gi|284166826|ref|YP_003405105.1| - 0.082 12.5 0.4 2.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Thiamine-phosphate synthase Nitro_FeMo-Co PF02579.17 gi|284166826|ref|YP_003405105.1| - 0.14 12.5 0.8 3.4 8.1 0.0 2.7 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor AAA_12 PF13087.6 gi|284166826|ref|YP_003405105.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain F420_ligase PF01996.16 gi|284166827|ref|YP_003405106.1| - 7.9e-60 202.2 0.0 1e-59 201.9 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Methyltransf_25 PF13649.6 gi|284166828|ref|YP_003405107.1| - 4.3e-23 81.8 0.1 7.6e-23 81.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284166828|ref|YP_003405107.1| - 6e-22 78.1 0.1 1e-21 77.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166828|ref|YP_003405107.1| - 2.3e-20 72.9 0.0 3.1e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284166828|ref|YP_003405107.1| - 1.2e-19 70.6 0.0 3.4e-19 69.1 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|284166828|ref|YP_003405107.1| - 2.2e-15 57.2 0.0 3.1e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166828|ref|YP_003405107.1| - 9.9e-12 45.0 0.0 1.5e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|284166828|ref|YP_003405107.1| - 0.00017 20.7 0.0 0.00022 20.4 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|284166828|ref|YP_003405107.1| - 0.00062 19.3 0.0 0.0093 15.5 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_9 PF08003.11 gi|284166828|ref|YP_003405107.1| - 0.0013 17.8 0.0 0.0017 17.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.16 gi|284166828|ref|YP_003405107.1| - 0.0031 16.1 0.0 0.0041 15.7 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.20 gi|284166828|ref|YP_003405107.1| - 0.0035 16.7 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|284166828|ref|YP_003405107.1| - 0.0038 17.2 0.0 0.0054 16.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|284166828|ref|YP_003405107.1| - 0.0049 16.0 0.0 0.0065 15.6 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|284166828|ref|YP_003405107.1| - 0.0061 16.2 0.1 0.0095 15.6 0.1 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|284166828|ref|YP_003405107.1| - 0.0071 16.1 0.0 0.01 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Pox_MCEL PF03291.16 gi|284166828|ref|YP_003405107.1| - 0.011 14.9 0.0 0.086 11.9 0.0 1.9 1 1 0 1 1 1 0 mRNA capping enzyme zf-CCHC_2 PF13696.6 gi|284166828|ref|YP_003405107.1| - 0.013 15.3 0.5 0.026 14.3 0.5 1.5 1 0 0 1 1 1 0 Zinc knuckle Methyltransf_8 PF05148.15 gi|284166828|ref|YP_003405107.1| - 0.014 15.3 0.1 0.053 13.4 0.1 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|284166828|ref|YP_003405107.1| - 0.021 14.4 0.0 0.035 13.6 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase small domain DZR PF12773.7 gi|284166828|ref|YP_003405107.1| - 0.035 14.1 0.2 0.069 13.2 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Bac_luciferase PF00296.20 gi|284166829|ref|YP_003405108.1| - 1e-65 222.2 11.6 1.2e-65 222.0 11.1 1.3 1 1 0 1 1 1 1 Luciferase-like monooxygenase VitK2_biosynth PF02621.14 gi|284166829|ref|YP_003405108.1| - 0.079 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Menaquinone biosynthesis A2L_zn_ribbon PF08792.10 gi|284166831|ref|YP_003405110.1| - 0.0001 21.9 0.8 0.0002 21.0 0.8 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|284166831|ref|YP_003405110.1| - 0.0011 19.0 2.0 0.0022 18.0 2.0 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|284166831|ref|YP_003405110.1| - 0.0069 16.6 3.3 0.022 15.0 3.3 1.8 1 0 0 1 1 1 1 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|284166831|ref|YP_003405110.1| - 0.029 13.9 3.7 0.029 13.9 3.7 2.7 2 2 1 3 3 3 0 TFIIB zinc-binding HypA PF01155.19 gi|284166831|ref|YP_003405110.1| - 0.27 11.2 0.5 0.39 10.8 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|284166831|ref|YP_003405110.1| - 0.34 10.9 1.7 0.59 10.1 1.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|284166831|ref|YP_003405110.1| - 0.48 10.2 7.0 4.5 7.1 1.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain CSD PF00313.22 gi|284166832|ref|YP_003405111.1| - 1.6e-20 72.7 0.1 1.8e-20 72.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|284166832|ref|YP_003405111.1| - 0.0095 15.6 1.5 0.014 15.1 1.5 1.4 1 0 0 1 1 1 1 Ribonuclease B OB domain S1-like PF14444.6 gi|284166832|ref|YP_003405111.1| - 0.0098 15.8 0.9 0.015 15.2 0.9 1.4 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.8 gi|284166832|ref|YP_003405111.1| - 0.054 13.5 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Rho_RNA_bind PF07497.12 gi|284166832|ref|YP_003405111.1| - 0.15 12.0 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain AAA_3 PF07726.11 gi|284166833|ref|YP_003405112.1| - 8.2e-61 203.6 0.0 2.8e-60 201.9 0.1 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|284166833|ref|YP_003405112.1| - 2e-19 69.2 2.4 6.1e-19 67.6 1.5 2.2 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|284166833|ref|YP_003405112.1| - 1.3e-13 51.1 0.0 2.3e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|284166833|ref|YP_003405112.1| - 2.6e-06 27.9 0.0 7e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284166833|ref|YP_003405112.1| - 7.9e-06 25.7 0.0 0.0058 16.3 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|284166833|ref|YP_003405112.1| - 0.0001 21.7 0.0 0.003 17.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|284166833|ref|YP_003405112.1| - 0.00012 21.8 0.0 0.0011 18.7 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|284166833|ref|YP_003405112.1| - 0.00013 21.1 0.0 0.00034 19.8 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain DUF58 PF01882.18 gi|284166834|ref|YP_003405113.1| - 1.7e-12 47.4 0.7 4.9e-12 46.0 0.7 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.19 gi|284166835|ref|YP_003405114.1| - 6.4e-28 97.4 0.2 1.5e-27 96.2 0.2 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|284166835|ref|YP_003405114.1| - 8.4e-06 26.0 7.3 8.4e-06 26.0 7.3 3.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|284166835|ref|YP_003405114.1| - 9.4e-05 21.5 0.0 9.4e-05 21.5 0.0 3.2 3 1 0 3 3 3 1 Domain of unknown function (DUF3488) Transglut_core3 PF13471.6 gi|284166835|ref|YP_003405114.1| - 0.018 15.0 0.3 0.14 12.1 0.0 2.4 2 0 0 2 2 2 0 Transglutaminase-like superfamily SUI1 PF01253.22 gi|284166836|ref|YP_003405115.1| - 4.8e-22 78.3 0.0 5.8e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|284166836|ref|YP_003405115.1| - 0.0061 16.8 0.0 0.0078 16.5 0.0 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|284166836|ref|YP_003405115.1| - 0.0081 15.9 0.4 0.0097 15.6 0.4 1.1 1 0 0 1 1 1 1 DTW domain Rhodanese PF00581.20 gi|284166837|ref|YP_003405116.1| - 5.5e-11 42.9 0.0 6.4e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.28 gi|284166838|ref|YP_003405117.1| - 4e-15 56.0 0.9 7.5e-15 55.1 0.9 1.4 1 0 0 1 1 1 1 NUDIX domain SpoVAD PF07451.11 gi|284166839|ref|YP_003405118.1| - 0.0068 15.1 0.0 0.0076 15.0 0.0 1.1 1 0 0 1 1 1 1 Stage V sporulation protein AD (SpoVAD) Reductase_C PF14759.6 gi|284166839|ref|YP_003405118.1| - 0.051 14.1 0.4 0.18 12.4 0.1 1.9 2 0 0 2 2 2 0 Reductase C-terminal DUF2884 PF11101.8 gi|284166839|ref|YP_003405118.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Inhibitor_I53 PF11714.8 gi|284166839|ref|YP_003405118.1| - 8 6.7 8.2 20 5.5 0.1 3.0 1 1 2 3 3 3 0 Thrombin inhibitor Madanin zf-C2H2_9 PF16293.5 gi|284166840|ref|YP_003405119.1| - 0.00077 19.2 0.3 0.0015 18.4 0.3 1.4 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) TT_ORF2 PF02957.15 gi|284166840|ref|YP_003405119.1| - 0.31 12.0 5.5 0.59 11.1 5.5 1.5 1 0 0 1 1 1 0 TT viral ORF2 Acetyltransf_1 PF00583.25 gi|284166841|ref|YP_003405120.1| - 3.3e-19 69.3 0.0 4e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284166841|ref|YP_003405120.1| - 7.9e-13 48.6 0.0 1.1e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284166841|ref|YP_003405120.1| - 2.2e-12 47.0 0.0 2.4e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166841|ref|YP_003405120.1| - 1.1e-08 35.2 0.0 4.3e-08 33.3 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166841|ref|YP_003405120.1| - 6.5e-07 29.2 0.0 1.3e-06 28.2 0.0 1.5 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|284166841|ref|YP_003405120.1| - 0.0055 16.4 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284166841|ref|YP_003405120.1| - 0.0085 16.2 0.0 0.009 16.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284166841|ref|YP_003405120.1| - 0.1 13.3 0.0 0.15 12.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF892 PF05974.12 gi|284166842|ref|YP_003405121.1| - 4.4e-35 121.1 12.0 1.6e-34 119.3 12.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|284166842|ref|YP_003405121.1| - 1.5e-05 25.0 13.5 2.3e-05 24.3 13.5 1.3 1 1 0 1 1 1 1 Ferritin-like domain Vir_act_alpha_C PF10400.9 gi|284166842|ref|YP_003405121.1| - 0.063 14.0 7.3 3.1 8.5 2.2 2.5 2 1 0 2 2 2 0 Virulence activator alpha C-term Homeodomain PF00046.29 gi|284166842|ref|YP_003405121.1| - 0.21 11.5 1.9 2.2 8.2 0.2 3.1 3 1 1 4 4 4 0 Homeodomain MerR-DNA-bind PF09278.11 gi|284166842|ref|YP_003405121.1| - 1.1 9.9 9.1 0.43 11.2 3.6 2.5 2 1 0 2 2 2 0 MerR, DNA binding FlgN PF05130.12 gi|284166842|ref|YP_003405121.1| - 4 8.0 9.5 13 6.2 1.7 2.5 2 1 0 2 2 2 0 FlgN protein COMM_domain PF07258.14 gi|284166843|ref|YP_003405122.1| - 0.061 13.5 0.0 0.067 13.3 0.0 1.2 1 0 0 1 1 1 0 COMM domain DUF1007 PF06226.13 gi|284166844|ref|YP_003405123.1| - 0.086 12.8 0.2 0.088 12.8 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1007) HTH_20 PF12840.7 gi|284166847|ref|YP_003405126.1| - 4.5e-13 49.0 0.1 7.7e-13 48.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284166847|ref|YP_003405126.1| - 0.00046 20.0 0.1 0.0011 18.8 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284166847|ref|YP_003405126.1| - 0.00051 19.8 0.1 0.00092 19.0 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284166847|ref|YP_003405126.1| - 0.002 17.9 0.0 0.0033 17.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|284166847|ref|YP_003405126.1| - 0.0022 18.0 0.0 0.0067 16.5 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|284166847|ref|YP_003405126.1| - 0.0037 17.1 0.0 0.0071 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family CENP-B_N PF04218.13 gi|284166847|ref|YP_003405126.1| - 0.0099 15.5 0.0 0.022 14.4 0.0 1.5 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain pXO2-72 PF17443.2 gi|284166847|ref|YP_003405126.1| - 0.015 15.6 0.1 0.025 14.8 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized protein pXO2-72 FUR PF01475.19 gi|284166847|ref|YP_003405126.1| - 0.078 13.1 0.1 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family HTH_11 PF08279.12 gi|284166847|ref|YP_003405126.1| - 0.1 12.6 0.1 0.22 11.5 0.1 1.5 1 0 0 1 1 1 0 HTH domain Rax2 PF12768.7 gi|284166848|ref|YP_003405127.1| - 0.0092 15.5 0.4 0.0092 15.5 0.4 1.9 2 1 0 2 2 2 1 Cortical protein marker for cell polarity Cu-oxidase_2 PF07731.14 gi|284166849|ref|YP_003405128.1| - 1.2e-25 89.9 8.1 4e-15 55.8 0.2 2.9 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|284166849|ref|YP_003405128.1| - 1.1e-22 80.3 3.3 1.7e-17 63.5 1.1 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|284166849|ref|YP_003405128.1| - 2.9e-12 47.0 0.0 6.3e-12 45.9 0.0 1.6 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|284166849|ref|YP_003405128.1| - 0.0029 17.7 0.0 0.091 12.9 0.0 2.7 2 1 0 2 2 2 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|284166849|ref|YP_003405128.1| - 0.22 12.0 3.2 0.33 11.4 1.2 2.1 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family Pyr_redox_2 PF07992.14 gi|284166850|ref|YP_003405129.1| - 4.7e-67 226.3 6.9 3.7e-66 223.3 2.9 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|284166850|ref|YP_003405129.1| - 2.1e-39 134.1 0.4 2.1e-39 134.1 0.4 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|284166850|ref|YP_003405129.1| - 1.5e-23 83.1 2.5 5.8e-20 71.6 0.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284166850|ref|YP_003405129.1| - 6.6e-10 38.7 0.2 0.0014 17.9 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284166850|ref|YP_003405129.1| - 8.4e-09 35.0 7.5 5.7e-07 29.0 1.8 2.8 3 1 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|284166850|ref|YP_003405129.1| - 1.1e-08 34.6 8.4 1.9e-06 27.2 0.6 3.3 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|284166850|ref|YP_003405129.1| - 2.4e-08 34.1 1.4 0.001 19.2 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284166850|ref|YP_003405129.1| - 1.4e-07 30.6 3.3 2.1e-05 23.4 0.1 2.8 3 0 0 3 3 3 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|284166850|ref|YP_003405129.1| - 3.5e-06 26.5 4.3 0.037 13.3 0.5 3.4 3 1 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|284166850|ref|YP_003405129.1| - 6.8e-06 25.7 0.4 6.8e-06 25.7 0.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|284166850|ref|YP_003405129.1| - 7.3e-06 25.4 2.3 0.0036 16.6 0.1 3.0 3 0 0 3 3 3 2 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|284166850|ref|YP_003405129.1| - 3.6e-05 23.4 0.3 0.00077 19.1 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|284166850|ref|YP_003405129.1| - 9.4e-05 21.8 7.8 0.0082 15.4 0.4 2.6 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|284166850|ref|YP_003405129.1| - 0.00012 21.3 4.0 0.016 14.2 1.0 2.6 2 1 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|284166850|ref|YP_003405129.1| - 0.00015 21.7 1.9 0.001 19.0 0.0 2.8 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|284166850|ref|YP_003405129.1| - 0.00032 20.4 13.8 0.044 13.4 1.1 3.6 3 1 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|284166850|ref|YP_003405129.1| - 0.00098 19.5 0.9 0.91 10.0 0.1 2.8 2 1 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|284166850|ref|YP_003405129.1| - 0.0029 16.5 0.1 0.0029 16.5 0.1 2.3 3 0 0 3 3 3 1 Tryptophan halogenase XdhC_C PF13478.6 gi|284166850|ref|YP_003405129.1| - 0.0035 17.8 3.9 0.13 12.8 0.4 3.3 3 1 0 3 3 3 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|284166850|ref|YP_003405129.1| - 0.013 14.9 0.5 1 8.7 0.0 2.6 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|284166850|ref|YP_003405129.1| - 0.017 15.4 0.2 0.42 10.9 0.0 2.7 2 0 0 2 2 2 0 TrkA-N domain 2-oxoacid_dh PF00198.23 gi|284166851|ref|YP_003405130.1| - 1e-88 296.7 0.0 1.4e-88 296.3 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3_binding PF02817.17 gi|284166851|ref|YP_003405130.1| - 2.2e-23 82.3 0.8 6.7e-16 58.3 0.1 3.0 3 0 0 3 3 3 2 e3 binding domain Biotin_lipoyl PF00364.22 gi|284166851|ref|YP_003405130.1| - 2.4e-23 81.7 1.7 5.7e-23 80.6 1.7 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|284166851|ref|YP_003405130.1| - 2.5e-06 27.2 0.1 0.0043 16.9 0.1 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|284166851|ref|YP_003405130.1| - 4.6e-05 24.1 2.8 0.026 15.2 0.3 2.6 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.19 gi|284166851|ref|YP_003405130.1| - 6.7e-05 22.8 0.4 0.00016 21.6 0.4 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|284166851|ref|YP_003405130.1| - 0.014 15.4 0.2 0.041 13.8 0.2 1.8 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|284166851|ref|YP_003405130.1| - 0.032 13.4 0.1 0.1 11.8 0.1 1.8 1 1 0 1 1 1 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|284166851|ref|YP_003405130.1| - 0.12 12.1 0.1 16 5.3 0.0 2.4 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Transket_pyr PF02779.24 gi|284166852|ref|YP_003405131.1| - 2.8e-52 177.0 0.0 3.8e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|284166852|ref|YP_003405131.1| - 1e-38 132.0 0.0 1.8e-38 131.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|284166852|ref|YP_003405131.1| - 0.0032 17.7 0.0 0.0063 16.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|284166853|ref|YP_003405132.1| - 3.3e-86 288.9 0.0 5.1e-86 288.3 0.0 1.3 1 1 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|284166853|ref|YP_003405132.1| - 3e-06 26.7 0.0 4.3e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|284166853|ref|YP_003405132.1| - 0.003 17.4 0.4 0.026 14.3 0.4 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.6 gi|284166853|ref|YP_003405132.1| - 0.015 14.9 0.0 0.037 13.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Transketolase_N PF00456.21 gi|284166853|ref|YP_003405132.1| - 0.017 14.1 0.0 0.028 13.4 0.0 1.3 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain VKG_Carbox PF05090.14 gi|284166854|ref|YP_003405133.1| - 1.6e-15 56.9 5.6 2.1e-15 56.5 5.6 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase Radical_SAM PF04055.21 gi|284166855|ref|YP_003405134.1| - 8.1e-14 52.3 0.3 2.7e-13 50.6 0.2 1.9 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|284166855|ref|YP_003405134.1| - 2.7e-10 40.6 0.1 5.5e-10 39.6 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|284166855|ref|YP_003405134.1| - 0.0014 18.7 0.1 1.2 9.2 0.0 3.4 2 2 1 3 3 3 2 B12 binding domain DUF2071 PF09844.9 gi|284166856|ref|YP_003405135.1| - 3.8e-69 232.5 0.2 4.3e-69 232.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|284166856|ref|YP_003405135.1| - 0.00078 19.1 0.1 0.001 18.7 0.1 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) bPH_2 PF03703.14 gi|284166857|ref|YP_003405136.1| - 1.2e-18 67.0 0.0 1.7e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain DEAD PF00270.29 gi|284166860|ref|YP_003405139.1| - 2e-23 83.1 0.0 4e-23 82.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|284166860|ref|YP_003405139.1| - 8.6e-13 48.0 0.0 2.6e-09 36.6 0.0 2.1 2 0 0 2 2 2 2 Sec63 Brl domain ResIII PF04851.15 gi|284166860|ref|YP_003405139.1| - 8.7e-11 42.1 0.0 1.5e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|284166860|ref|YP_003405139.1| - 9e-09 35.7 0.0 5.4e-08 33.2 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|284166860|ref|YP_003405139.1| - 0.0044 17.6 0.4 0.014 16.0 0.4 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain UTP25 PF06862.12 gi|284166860|ref|YP_003405139.1| - 0.047 12.5 0.0 0.068 11.9 0.0 1.1 1 0 0 1 1 1 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 HAD_2 PF13419.6 gi|284166861|ref|YP_003405140.1| - 4.3e-30 105.1 0.0 5.1e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284166861|ref|YP_003405140.1| - 8.6e-21 75.2 0.5 3.4e-20 73.2 0.5 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284166861|ref|YP_003405140.1| - 2.7e-11 44.2 0.5 3.6e-11 43.8 0.5 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284166861|ref|YP_003405140.1| - 1.2e-09 38.1 0.7 6.9e-09 35.6 0.3 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like Ufm1 PF03671.14 gi|284166861|ref|YP_003405140.1| - 0.038 14.1 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin fold modifier 1 protein Hydrolase_6 PF13344.6 gi|284166861|ref|YP_003405140.1| - 0.16 12.1 0.0 1 9.5 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DJ-1_PfpI PF01965.24 gi|284166862|ref|YP_003405141.1| - 2.7e-27 95.6 0.7 3.3e-27 95.3 0.7 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|284166862|ref|YP_003405141.1| - 0.033 13.9 0.0 0.06 13.0 0.0 1.5 1 1 0 1 1 1 0 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|284166862|ref|YP_003405141.1| - 0.048 13.2 0.0 0.23 11.0 0.0 1.8 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain AsnC_trans_reg PF01037.21 gi|284166863|ref|YP_003405142.1| - 2.5e-09 37.0 0.5 2.8e-09 36.8 0.5 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Redoxin PF08534.10 gi|284166864|ref|YP_003405143.1| - 0.00023 20.9 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 Redoxin Flavi_NS2B PF01002.19 gi|284166864|ref|YP_003405143.1| - 0.072 13.0 0.1 0.24 11.3 0.0 1.8 2 0 0 2 2 2 0 Flavivirus non-structural protein NS2B Thioredoxin_2 PF13098.6 gi|284166864|ref|YP_003405143.1| - 0.1 13.0 0.0 0.14 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|284166864|ref|YP_003405143.1| - 0.2 11.6 0.0 0.3 11.0 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family HTH_27 PF13463.6 gi|284166868|ref|YP_003405147.1| - 0.028 14.9 0.0 0.056 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4307 PF14155.6 gi|284166868|ref|YP_003405147.1| - 0.042 13.7 0.5 4.6 7.1 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF3117 PF11314.8 gi|284166868|ref|YP_003405147.1| - 0.13 12.1 0.5 49 3.8 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3117) DUF4897 PF16238.5 gi|284166868|ref|YP_003405147.1| - 0.23 11.3 0.0 0.36 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) CdvA PF18822.1 gi|284166869|ref|YP_003405148.1| - 0.0033 17.2 0.4 0.0052 16.6 0.4 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain DUF3450 PF11932.8 gi|284166869|ref|YP_003405148.1| - 0.025 13.9 0.6 0.025 13.9 0.6 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) EzrA PF06160.12 gi|284166869|ref|YP_003405148.1| - 0.052 11.7 0.1 0.06 11.5 0.1 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA YjbE PF11106.8 gi|284166869|ref|YP_003405148.1| - 0.054 13.7 3.6 0.17 12.1 3.6 1.8 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE DASH_Dad3 PF08656.10 gi|284166869|ref|YP_003405148.1| - 0.099 12.7 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 DASH complex subunit Dad3 ABC_tran_CTD PF16326.5 gi|284166869|ref|YP_003405148.1| - 0.65 10.3 4.9 0.37 11.1 1.5 1.9 1 1 1 2 2 2 0 ABC transporter C-terminal domain zf-C4_Topoisom PF01396.19 gi|284166870|ref|YP_003405149.1| - 0.00021 21.0 5.1 0.027 14.2 0.1 2.6 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger NucS PF01939.16 gi|284166870|ref|YP_003405149.1| - 0.00029 20.2 0.0 0.00039 19.8 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS Auto_anti-p27 PF06677.12 gi|284166870|ref|YP_003405149.1| - 0.014 15.6 1.7 0.014 15.6 1.7 3.6 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|284166870|ref|YP_003405149.1| - 0.021 14.9 1.6 0.021 14.9 1.6 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|284166870|ref|YP_003405149.1| - 0.11 12.0 3.8 0.39 10.2 3.8 2.0 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284166870|ref|YP_003405149.1| - 4.7 7.4 6.3 3.3 7.9 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain tRNA_int_endo PF01974.17 gi|284166871|ref|YP_003405150.1| - 7.4e-31 106.1 0.2 7.4e-25 86.8 0.0 3.8 2 1 1 3 3 3 3 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|284166871|ref|YP_003405150.1| - 3.8e-26 90.5 0.2 4.5e-13 48.7 0.0 2.6 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|284166871|ref|YP_003405150.1| - 0.024 14.8 0.2 10 6.4 0.1 2.5 2 0 0 2 2 2 0 tRNA-splicing endonuclease subunit sen54 N-term Tubulin PF00091.25 gi|284166872|ref|YP_003405151.1| - 1.3e-11 45.1 0.0 6.9e-08 32.9 0.0 2.5 2 1 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|284166872|ref|YP_003405151.1| - 0.078 12.2 0.5 2.9 7.0 0.0 2.2 1 1 0 2 2 2 0 Tubulin like OCD_Mu_crystall PF02423.15 gi|284166873|ref|YP_003405152.1| - 1.1e-46 159.3 0.0 1.4e-46 158.9 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|284166873|ref|YP_003405152.1| - 0.0021 18.1 0.0 0.0037 17.3 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|284166873|ref|YP_003405152.1| - 0.016 15.8 0.0 0.032 14.8 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DNA_binding_1 PF01035.20 gi|284166874|ref|YP_003405153.1| - 6.1e-27 93.6 0.0 8.1e-27 93.2 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain PQQ_2 PF13360.6 gi|284166875|ref|YP_003405154.1| - 1.4e-30 106.6 16.7 3.1e-21 76.1 3.8 3.6 1 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|284166875|ref|YP_003405154.1| - 4.9e-22 76.7 13.1 2.1e-05 24.2 0.3 6.3 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|284166875|ref|YP_003405154.1| - 1.9e-21 75.9 34.9 3.4e-10 40.1 1.9 7.3 8 0 0 8 8 8 4 PQQ-like domain SDA1 PF05285.12 gi|284166875|ref|YP_003405154.1| - 2.3 7.6 22.2 3.5 7.0 22.2 1.3 1 0 0 1 1 1 0 SDA1 tRNA-synt_1b PF00579.25 gi|284166876|ref|YP_003405155.1| - 4.9e-43 147.5 0.0 4.6e-26 91.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Pup PF05639.11 gi|284166876|ref|YP_003405155.1| - 2.1 9.3 5.8 4.2 8.3 0.5 3.4 3 0 0 3 3 3 0 Pup-like protein SPX PF03105.19 gi|284166877|ref|YP_003405156.1| - 5.6 6.8 6.9 8.1 6.2 6.9 1.2 1 0 0 1 1 1 0 SPX domain tRNA-synt_2d PF01409.20 gi|284166878|ref|YP_003405157.1| - 6.4e-81 271.4 0.0 8.3e-81 271.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DprA_WH PF17782.1 gi|284166878|ref|YP_003405157.1| - 6.5e-05 23.0 2.7 6.5e-05 23.0 2.7 4.2 4 0 0 4 4 4 1 DprA winged helix domain MarR PF01047.22 gi|284166878|ref|YP_003405157.1| - 0.00025 20.9 0.0 0.026 14.5 0.0 2.4 2 0 0 2 2 2 1 MarR family tRNA-synt_2 PF00152.20 gi|284166878|ref|YP_003405157.1| - 0.00049 19.3 0.1 0.036 13.2 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|284166878|ref|YP_003405157.1| - 0.0012 18.3 0.0 0.4 10.1 0.0 2.4 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain MarR_2 PF12802.7 gi|284166878|ref|YP_003405157.1| - 0.036 13.9 2.9 0.15 11.9 0.3 2.8 2 1 1 3 3 3 0 MarR family PRODH PF18327.1 gi|284166878|ref|YP_003405157.1| - 0.11 12.7 1.4 0.4 10.9 1.4 2.0 1 0 0 1 1 1 0 Proline utilization A proline dehydrogenase N-terminal domain Rrf2 PF02082.20 gi|284166878|ref|YP_003405157.1| - 0.13 12.6 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator tRNA_synthFbeta PF17759.1 gi|284166879|ref|YP_003405158.1| - 2.2e-43 148.2 0.0 3.1e-43 147.7 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|284166879|ref|YP_003405158.1| - 6.8e-16 58.3 0.8 9.5e-15 54.7 0.3 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|284166879|ref|YP_003405158.1| - 6.3e-13 48.8 0.0 1e-12 48.1 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|284166879|ref|YP_003405158.1| - 7.8e-07 28.8 0.0 1.2e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) PhetRS_B1 PF18262.1 gi|284166879|ref|YP_003405158.1| - 1.5e-06 28.3 0.7 0.00024 21.3 0.0 3.1 3 1 0 3 3 3 1 Phe-tRNA synthetase beta subunit B1 domain SymE_toxin PF08845.10 gi|284166880|ref|YP_003405159.1| - 0.0012 18.9 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|284166880|ref|YP_003405159.1| - 0.013 15.4 0.4 0.02 14.8 0.4 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MC1 PF05854.11 gi|284166881|ref|YP_003405160.1| - 3.6e-47 158.6 0.2 4.3e-47 158.4 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF4776 PF16003.5 gi|284166881|ref|YP_003405160.1| - 0.044 12.8 0.0 0.044 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) MFS_1 PF07690.16 gi|284166882|ref|YP_003405161.1| - 2.4e-32 112.2 42.8 2.4e-32 112.2 42.8 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3149 PF11346.8 gi|284166882|ref|YP_003405161.1| - 2.1 8.0 9.3 6.9 6.4 0.1 4.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3149) MFS_1_like PF12832.7 gi|284166882|ref|YP_003405161.1| - 2.5 6.9 23.2 0.33 9.7 0.1 3.7 3 1 1 4 4 4 0 MFS_1 like family DUF624 PF04854.14 gi|284166882|ref|YP_003405161.1| - 8.5 6.6 11.4 1.8 8.7 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function, DUF624 GATase PF00117.28 gi|284166883|ref|YP_003405162.1| - 7.2e-17 61.8 0.0 9.5e-17 61.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284166883|ref|YP_003405162.1| - 2.3e-11 43.8 0.2 2.5e-09 37.2 0.2 2.5 1 1 0 1 1 1 1 Peptidase C26 DUF368 PF04018.13 gi|284166885|ref|YP_003405164.1| - 1e-59 202.1 18.3 1.2e-59 201.9 18.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) SAT PF16073.5 gi|284166885|ref|YP_003405164.1| - 0.11 12.2 0.7 0.25 11.0 0.7 1.6 1 0 0 1 1 1 0 Starter unit:ACP transacylase in aflatoxin biosynthesis Nitroreductase PF00881.24 gi|284166886|ref|YP_003405165.1| - 3.1e-14 53.4 0.7 2.8e-07 30.8 0.0 3.3 2 2 0 2 2 2 2 Nitroreductase family MutS_V PF00488.21 gi|284166887|ref|YP_003405166.1| - 3.5e-09 37.0 0.5 5.8e-09 36.2 0.1 1.5 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.6 gi|284166887|ref|YP_003405166.1| - 1.4e-06 28.8 2.9 1.1e-05 26.0 0.3 3.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|284166887|ref|YP_003405166.1| - 0.00017 21.3 0.6 0.0055 16.5 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_21 PF13304.6 gi|284166887|ref|YP_003405166.1| - 0.011 15.5 0.0 0.25 11.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF1059 PF06348.11 gi|284166888|ref|YP_003405167.1| - 7.7e-06 26.0 0.6 1e-05 25.7 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1059) DUF664 PF04978.12 gi|284166889|ref|YP_003405168.1| - 0.053 13.9 0.5 0.065 13.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF664) AAA_16 PF13191.6 gi|284166890|ref|YP_003405169.1| - 5.4e-13 49.7 0.0 1.1e-10 42.1 0.0 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284166890|ref|YP_003405169.1| - 4.9e-10 39.8 0.0 1.1e-09 38.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284166890|ref|YP_003405169.1| - 4.8e-06 27.0 0.0 1.2e-05 25.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|284166890|ref|YP_003405169.1| - 1.5e-05 24.6 0.0 0.00061 19.3 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region Cdc6_C PF09079.11 gi|284166890|ref|YP_003405169.1| - 0.00077 19.4 0.0 0.0027 17.7 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_11 PF13086.6 gi|284166890|ref|YP_003405169.1| - 0.0013 18.6 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|284166890|ref|YP_003405169.1| - 0.0014 18.8 0.0 0.0034 17.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|284166890|ref|YP_003405169.1| - 0.0018 18.0 0.0 0.99 9.1 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_35 PF14516.6 gi|284166890|ref|YP_003405169.1| - 0.0022 16.9 0.0 0.069 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain Viral_helicase1 PF01443.18 gi|284166890|ref|YP_003405169.1| - 0.0028 17.5 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|284166890|ref|YP_003405169.1| - 0.0046 16.7 0.0 0.014 15.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|284166890|ref|YP_003405169.1| - 0.005 16.8 0.0 0.013 15.5 0.0 1.7 1 1 0 1 1 1 1 NACHT domain AAA_14 PF13173.6 gi|284166890|ref|YP_003405169.1| - 0.0053 16.8 0.1 0.55 10.3 0.0 2.3 1 1 0 2 2 2 1 AAA domain AAA_32 PF13654.6 gi|284166890|ref|YP_003405169.1| - 0.0055 15.5 0.0 1.2 7.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|284166890|ref|YP_003405169.1| - 0.0066 15.5 0.0 0.01 14.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|284166890|ref|YP_003405169.1| - 0.007 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.6 gi|284166890|ref|YP_003405169.1| - 0.0082 16.7 0.0 0.021 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|284166890|ref|YP_003405169.1| - 0.0085 15.8 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain TIP49_C PF17856.1 gi|284166890|ref|YP_003405169.1| - 0.016 15.3 0.0 0.035 14.2 0.0 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain TniB PF05621.11 gi|284166890|ref|YP_003405169.1| - 0.016 14.6 0.0 0.037 13.4 0.0 1.6 2 0 0 2 2 1 0 Bacterial TniB protein AAA_19 PF13245.6 gi|284166890|ref|YP_003405169.1| - 0.019 15.3 0.0 0.036 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|284166890|ref|YP_003405169.1| - 0.02 14.2 0.0 0.035 13.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin MarR_2 PF12802.7 gi|284166890|ref|YP_003405169.1| - 0.02 14.8 0.0 0.092 12.6 0.0 2.1 1 1 0 1 1 1 0 MarR family DUF815 PF05673.13 gi|284166890|ref|YP_003405169.1| - 0.021 14.0 0.0 0.11 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF2075 PF09848.9 gi|284166890|ref|YP_003405169.1| - 0.032 13.5 0.0 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|284166890|ref|YP_003405169.1| - 0.033 14.6 0.0 0.075 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|284166890|ref|YP_003405169.1| - 0.049 13.5 0.0 0.096 12.6 0.0 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain Bac_DnaA PF00308.18 gi|284166890|ref|YP_003405169.1| - 0.056 13.3 0.0 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_28 PF13521.6 gi|284166890|ref|YP_003405169.1| - 0.065 13.5 0.0 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|284166890|ref|YP_003405169.1| - 0.069 12.9 0.0 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_6 PF12774.7 gi|284166890|ref|YP_003405169.1| - 0.08 11.9 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_17 PF13207.6 gi|284166890|ref|YP_003405169.1| - 0.09 13.2 0.1 0.63 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|284166890|ref|YP_003405169.1| - 0.12 11.6 0.0 4.2 6.5 0.0 2.3 1 1 1 2 2 2 0 KAP family P-loop domain SRP54 PF00448.22 gi|284166890|ref|YP_003405169.1| - 0.12 11.9 0.0 0.37 10.4 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Septin PF00735.18 gi|284166890|ref|YP_003405169.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Septin TrwB_AAD_bind PF10412.9 gi|284166890|ref|YP_003405169.1| - 0.18 10.6 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Mg_chelatase PF01078.21 gi|284166890|ref|YP_003405169.1| - 0.21 10.9 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sacchrp_dh_NADP PF03435.18 gi|284166891|ref|YP_003405170.1| - 1e-09 38.8 0.0 1.7e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|284166891|ref|YP_003405170.1| - 1.7e-05 24.8 0.0 4.1e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H-binding Epimerase PF01370.21 gi|284166891|ref|YP_003405170.1| - 0.0049 16.3 0.0 0.0075 15.7 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Acetyltransf_1 PF00583.25 gi|284166892|ref|YP_003405171.1| - 3.7e-11 43.3 0.0 4.5e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284166892|ref|YP_003405171.1| - 9.2e-10 38.5 0.0 1.4e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284166892|ref|YP_003405171.1| - 2.1e-08 34.5 0.0 3e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284166892|ref|YP_003405171.1| - 8.5e-07 29.2 0.0 2.6e-06 27.6 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166892|ref|YP_003405171.1| - 5e-05 23.2 0.0 7.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|284166892|ref|YP_003405171.1| - 0.00096 19.8 0.0 0.0012 19.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|284166892|ref|YP_003405171.1| - 0.0023 18.1 0.8 0.0033 17.6 0.8 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284166892|ref|YP_003405171.1| - 0.016 15.2 0.3 0.59 10.2 0.3 2.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain SUI1 PF01253.22 gi|284166893|ref|YP_003405172.1| - 6.1e-18 65.1 0.0 9.2e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|284166893|ref|YP_003405172.1| - 0.027 14.7 0.0 0.039 14.2 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF192 PF02643.15 gi|284166894|ref|YP_003405173.1| - 1.5e-24 86.0 0.0 2e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 TAT_signal PF10518.9 gi|284166894|ref|YP_003405173.1| - 0.18 11.7 0.2 0.18 11.7 0.2 1.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence UvrC_HhH_N PF08459.11 gi|284166895|ref|YP_003405174.1| - 1.3e-40 138.8 0.0 2.6e-40 137.9 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|284166895|ref|YP_003405174.1| - 2.5e-12 47.2 0.1 6.6e-12 45.9 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|284166895|ref|YP_003405174.1| - 1.7e-11 43.4 0.4 9.2e-08 31.6 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|284166895|ref|YP_003405174.1| - 1.3e-09 38.0 0.0 3.5e-09 36.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 gi|284166895|ref|YP_003405174.1| - 2.2e-09 36.8 1.9 6.1e-09 35.3 1.9 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|284166895|ref|YP_003405174.1| - 5.8e-09 36.1 0.0 1e-08 35.4 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|284166895|ref|YP_003405174.1| - 2.5e-05 24.8 0.1 0.4 11.3 0.0 2.9 2 1 1 3 3 3 2 5'-3' exonuclease, C-terminal SAM fold GHMP_kinases_C PF08544.13 gi|284166895|ref|YP_003405174.1| - 0.0081 16.5 0.3 0.043 14.2 0.2 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal HHH_3 PF12836.7 gi|284166895|ref|YP_003405174.1| - 0.028 14.7 0.0 0.25 11.6 0.0 2.4 1 1 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|284166895|ref|YP_003405174.1| - 0.14 12.5 0.1 7.5 7.1 0.0 2.5 2 0 0 2 2 2 0 IMS family HHH motif CsgA PF17334.2 gi|284166895|ref|YP_003405174.1| - 0.15 12.8 0.0 0.34 11.7 0.0 1.5 1 0 0 1 1 1 0 Minor curli fiber component A ABC_tran PF00005.27 gi|284166898|ref|YP_003405177.1| - 1.9e-29 102.9 0.0 3.2e-29 102.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166898|ref|YP_003405177.1| - 3.2e-11 43.6 0.0 7.1e-07 29.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284166898|ref|YP_003405177.1| - 1.4e-06 28.9 0.1 5.6e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|284166898|ref|YP_003405177.1| - 1.8e-06 27.8 0.0 2.9e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284166898|ref|YP_003405177.1| - 0.00097 18.6 0.0 0.36 10.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|284166898|ref|YP_003405177.1| - 0.0029 17.5 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|284166898|ref|YP_003405177.1| - 0.0039 17.7 0.0 0.0073 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|284166898|ref|YP_003405177.1| - 0.0049 15.9 0.4 0.01 14.8 0.0 1.6 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB IstB_IS21 PF01695.17 gi|284166898|ref|YP_003405177.1| - 0.0069 16.1 0.0 0.56 9.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_27 PF13514.6 gi|284166898|ref|YP_003405177.1| - 0.019 14.5 0.0 0.096 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284166898|ref|YP_003405177.1| - 0.029 14.1 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|284166898|ref|YP_003405177.1| - 0.033 14.6 0.1 0.14 12.5 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane_2 PF12679.7 gi|284166899|ref|YP_003405178.1| - 1.9e-54 184.9 12.3 3e-54 184.3 12.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284166899|ref|YP_003405178.1| - 2.6e-08 34.0 11.1 2.6e-08 34.0 11.1 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284166899|ref|YP_003405178.1| - 6.3e-08 32.1 24.6 8.5e-07 28.4 24.6 2.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|284166899|ref|YP_003405178.1| - 4.5e-07 29.5 13.2 7.5e-07 28.8 12.6 1.7 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|284166899|ref|YP_003405178.1| - 1.7e-06 27.7 9.0 1.7e-06 27.7 9.0 2.3 3 0 0 3 3 3 1 ABC-2 family transporter protein UPF0182 PF03699.13 gi|284166899|ref|YP_003405178.1| - 0.54 8.3 4.0 0.67 8.0 4.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF4131 PF13567.6 gi|284166899|ref|YP_003405178.1| - 0.58 9.8 5.5 7.5 6.2 2.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2512 PF10710.9 gi|284166899|ref|YP_003405178.1| - 1.5 8.5 10.2 3.7 7.2 10.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) BphX PF06139.12 gi|284166899|ref|YP_003405178.1| - 2.1 8.3 12.0 0.12 12.3 5.5 2.2 3 0 0 3 3 3 0 BphX-like ArsA_ATPase PF02374.15 gi|284166900|ref|YP_003405179.1| - 1.4e-83 280.6 0.0 3.9e-83 279.1 0.0 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|284166900|ref|YP_003405179.1| - 8.2e-10 38.8 0.0 5.5e-09 36.1 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|284166900|ref|YP_003405179.1| - 1.7e-08 34.6 0.0 5.5e-08 32.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|284166900|ref|YP_003405179.1| - 1.7e-05 24.4 0.3 0.00067 19.2 0.1 2.7 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|284166900|ref|YP_003405179.1| - 5.7e-05 22.8 6.6 0.016 14.8 0.4 3.2 2 1 1 4 4 4 2 AAA domain Fer4_NifH PF00142.18 gi|284166900|ref|YP_003405179.1| - 0.00035 20.1 0.0 0.00096 18.7 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|284166900|ref|YP_003405179.1| - 0.0013 18.2 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|284166900|ref|YP_003405179.1| - 0.0089 15.7 0.2 0.14 11.8 0.2 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CobA_CobO_BtuR PF02572.15 gi|284166900|ref|YP_003405179.1| - 0.014 15.6 1.2 4.5 7.5 0.2 3.1 2 1 1 3 3 3 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PhoH PF02562.16 gi|284166900|ref|YP_003405179.1| - 0.022 14.2 0.0 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein ATP_bind_1 PF03029.17 gi|284166900|ref|YP_003405179.1| - 0.071 12.9 0.1 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DNA_ligase_aden PF01653.18 gi|284166901|ref|YP_003405180.1| - 1.6e-106 356.0 0.0 2.3e-106 355.5 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|284166901|ref|YP_003405180.1| - 1.3e-30 105.1 3.0 2.7e-30 104.1 3.0 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|284166901|ref|YP_003405180.1| - 2.1e-20 72.6 0.4 5.2e-18 64.9 0.0 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|284166901|ref|YP_003405180.1| - 3.4e-19 69.2 0.0 2.3e-08 34.5 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|284166901|ref|YP_003405180.1| - 4.7e-13 49.3 0.0 9.5e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 gi|284166901|ref|YP_003405180.1| - 1.7e-07 30.7 0.1 0.041 13.8 0.0 4.3 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.16 gi|284166901|ref|YP_003405180.1| - 0.00041 20.3 2.2 0.00041 20.3 2.2 2.7 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HHH_8 PF14716.6 gi|284166901|ref|YP_003405180.1| - 0.0019 18.6 0.0 2.5 8.5 0.0 3.1 2 1 0 2 2 2 2 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|284166901|ref|YP_003405180.1| - 0.0072 16.9 0.0 0.051 14.2 0.0 2.5 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold CorC_HlyC PF03471.17 gi|284166901|ref|YP_003405180.1| - 0.049 13.6 0.1 0.55 10.3 0.0 2.6 2 0 0 2 2 2 0 Transporter associated domain Cdd1 PF11731.8 gi|284166901|ref|YP_003405180.1| - 0.2 11.9 0.0 3.8 7.8 0.0 2.7 2 1 1 3 3 3 0 Pathogenicity locus Fer2 PF00111.27 gi|284166902|ref|YP_003405181.1| - 4.2e-14 52.2 0.6 1.7e-13 50.3 0.6 1.8 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.11 gi|284166903|ref|YP_003405182.1| - 1.3e-196 653.8 0.1 1.5e-196 653.6 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|284166903|ref|YP_003405182.1| - 0.0098 15.2 0.0 0.05 12.9 0.0 2.1 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Fer2 PF00111.27 gi|284166904|ref|YP_003405183.1| - 3.2e-12 46.2 1.5 5.6e-11 42.2 1.5 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|284166904|ref|YP_003405183.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FIST_C PF10442.9 gi|284166904|ref|YP_003405183.1| - 0.038 14.0 0.1 0.062 13.3 0.1 1.3 1 1 0 1 1 1 0 FIST C domain Na_H_antiporter PF03553.14 gi|284166905|ref|YP_003405184.1| - 1.2e-60 205.3 40.8 5e-54 183.6 21.2 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Gate PF07670.14 gi|284166905|ref|YP_003405184.1| - 0.0014 18.9 7.9 0.28 11.5 1.4 3.3 2 1 0 2 2 2 2 Nucleoside recognition RIO1 PF01163.22 gi|284166906|ref|YP_003405185.1| - 7.2e-60 201.8 0.1 4.4e-59 199.2 0.0 1.9 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|284166906|ref|YP_003405185.1| - 3.5e-09 37.0 3.0 2.6e-05 24.3 0.0 2.7 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|284166906|ref|YP_003405185.1| - 0.00015 21.2 0.0 0.0011 18.4 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.14 gi|284166906|ref|YP_003405185.1| - 0.00017 21.0 0.1 0.0052 16.2 0.1 2.3 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|284166906|ref|YP_003405185.1| - 0.003 16.4 0.0 0.0044 15.8 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Choline_kinase PF01633.20 gi|284166906|ref|YP_003405185.1| - 0.1 12.2 0.0 0.28 10.7 0.0 1.7 1 1 0 1 1 1 0 Choline/ethanolamine kinase Fructosamin_kin PF03881.14 gi|284166906|ref|YP_003405185.1| - 0.12 11.6 0.0 7.2 5.7 0.0 2.1 1 1 1 2 2 2 0 Fructosamine kinase VQ PF05678.14 gi|284166906|ref|YP_003405185.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 VQ motif CENP-C_mid PF15620.6 gi|284166906|ref|YP_003405185.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.1 1 0 0 1 1 1 0 Centromere assembly component CENP-C middle DNMT3B-binding region tRNA-synt_1b PF00579.25 gi|284166907|ref|YP_003405186.1| - 6.4e-20 71.7 0.0 2.1e-19 70.0 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Metallophos_2 PF12850.7 gi|284166908|ref|YP_003405187.1| - 2.1e-30 106.1 2.4 2.4e-30 105.9 2.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284166908|ref|YP_003405187.1| - 0.00073 20.1 7.7 0.0023 18.4 7.7 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|284166908|ref|YP_003405187.1| - 0.031 13.6 0.3 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DUF2188 PF09954.9 gi|284166908|ref|YP_003405187.1| - 0.05 13.7 1.4 0.22 11.7 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2188) HTH_20 PF12840.7 gi|284166909|ref|YP_003405188.1| - 0.15 12.1 0.5 0.26 11.4 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain PAC2 PF09754.9 gi|284166910|ref|YP_003405189.1| - 2.3e-27 96.4 0.0 2.6e-27 96.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family KH_1 PF00013.29 gi|284166911|ref|YP_003405190.1| - 3.5e-14 52.4 0.5 2e-07 30.8 0.1 2.2 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|284166911|ref|YP_003405190.1| - 8.9e-05 22.2 3.9 0.0046 16.8 0.1 2.6 2 1 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|284166911|ref|YP_003405190.1| - 0.00018 21.5 0.0 0.00029 20.9 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain KH_4 PF13083.6 gi|284166911|ref|YP_003405190.1| - 0.017 15.0 3.6 1.8 8.5 0.3 3.0 2 1 1 3 3 3 0 KH domain DUF1177 PF06675.11 gi|284166912|ref|YP_003405191.1| - 0.11 11.3 0.4 0.15 10.9 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1177) FIST PF08495.10 gi|284166913|ref|YP_003405192.1| - 1e-29 103.8 0.0 1.9e-27 96.4 0.1 2.3 2 0 0 2 2 2 2 FIST N domain FIST_C PF10442.9 gi|284166913|ref|YP_003405192.1| - 3.2e-28 98.3 0.2 8.9e-26 90.4 0.0 2.4 2 0 0 2 2 2 2 FIST C domain HATPase_c PF02518.26 gi|284166914|ref|YP_003405193.1| - 2.4e-14 53.8 0.0 9.3e-14 51.9 0.0 2.0 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284166914|ref|YP_003405193.1| - 2e-12 47.0 0.2 5.6e-12 45.5 0.1 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|284166914|ref|YP_003405193.1| - 7.9e-05 22.6 0.2 0.00056 19.9 0.2 2.4 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_28 PF13518.6 gi|284166914|ref|YP_003405193.1| - 0.0061 16.7 0.1 0.015 15.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|284166914|ref|YP_003405193.1| - 0.012 15.6 0.1 0.032 14.3 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|284166914|ref|YP_003405193.1| - 0.013 15.3 0.0 0.035 13.9 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|284166914|ref|YP_003405193.1| - 0.038 13.7 0.0 0.086 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 WD40_alt PF14077.6 gi|284166914|ref|YP_003405193.1| - 0.13 12.1 0.2 0.27 11.1 0.2 1.4 1 0 0 1 1 1 0 Alternative WD40 repeat motif Cpn60_TCP1 PF00118.24 gi|284166915|ref|YP_003405194.1| - 7.9e-176 585.5 15.3 8.9e-176 585.3 15.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family P-II PF00543.22 gi|284166915|ref|YP_003405194.1| - 0.17 12.5 3.8 6.7 7.4 0.1 3.5 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II OCD_Mu_crystall PF02423.15 gi|284166916|ref|YP_003405195.1| - 1.4e-94 316.7 0.2 1.5e-94 316.5 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Sugar_tr PF00083.24 gi|284166917|ref|YP_003405196.1| - 3.7e-132 441.4 22.1 4.3e-132 441.2 22.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|284166917|ref|YP_003405196.1| - 3.6e-46 157.7 68.8 2.4e-37 128.7 37.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|284166917|ref|YP_003405196.1| - 4.7e-09 35.2 12.2 3.5e-08 32.3 2.0 2.1 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.6 gi|284166917|ref|YP_003405196.1| - 3.7e-07 29.1 34.4 0.0004 19.1 3.4 4.1 3 1 1 4 4 4 4 MFS/sugar transport protein MFS_1_like PF12832.7 gi|284166917|ref|YP_003405196.1| - 0.013 14.3 0.4 0.013 14.3 0.4 3.0 1 1 0 2 2 2 0 MFS_1 like family OATP PF03137.20 gi|284166917|ref|YP_003405196.1| - 0.014 13.7 10.5 0.14 10.4 0.8 3.2 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Gly-zipper_Omp PF13488.6 gi|284166917|ref|YP_003405196.1| - 0.016 15.2 3.7 0.016 15.2 3.7 2.6 2 0 0 2 2 2 0 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|284166917|ref|YP_003405196.1| - 1.4 8.7 10.3 0.086 12.6 3.8 2.5 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF2071 PF09844.9 gi|284166918|ref|YP_003405197.1| - 2.4e-68 229.9 0.1 2.9e-68 229.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|284166918|ref|YP_003405197.1| - 0.0029 17.2 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Bac_rhodopsin PF01036.18 gi|284166919|ref|YP_003405198.1| - 3.4e-27 95.5 18.6 4.4e-27 95.1 18.6 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein TMEM192 PF14802.6 gi|284166919|ref|YP_003405198.1| - 0.39 9.8 0.8 0.65 9.1 0.8 1.3 1 0 0 1 1 1 0 TMEM192 family MCPsignal PF00015.21 gi|284166920|ref|YP_003405199.1| - 3.1e-32 111.8 71.2 1.8e-31 109.3 30.7 4.6 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|284166920|ref|YP_003405199.1| - 9e-12 45.2 15.4 2e-10 40.9 0.2 6.1 5 2 0 5 5 4 1 HAMP domain DUF948 PF06103.11 gi|284166920|ref|YP_003405199.1| - 0.00063 19.9 56.6 0.011 16.0 4.4 8.4 3 2 5 8 8 8 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|284166920|ref|YP_003405199.1| - 0.0021 18.1 50.7 0.27 11.2 3.0 5.3 3 2 1 5 5 5 3 Laminin Domain II Syntaxin_2 PF14523.6 gi|284166920|ref|YP_003405199.1| - 0.0082 16.5 21.2 0.45 10.9 0.9 5.2 2 1 3 5 5 5 2 Syntaxin-like protein Fib_alpha PF08702.10 gi|284166920|ref|YP_003405199.1| - 0.12 12.6 33.9 1.3 9.2 1.2 5.0 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|284166920|ref|YP_003405199.1| - 0.17 10.8 53.0 0.093 11.6 17.5 3.5 1 1 3 4 4 4 0 Spc7 kinetochore protein Laminin_I PF06008.14 gi|284166920|ref|YP_003405199.1| - 0.19 11.4 61.8 0.41 10.3 8.4 5.2 1 1 4 5 5 5 0 Laminin Domain I IFT57 PF10498.9 gi|284166920|ref|YP_003405199.1| - 0.2 10.6 42.7 3.3 6.6 20.8 2.9 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 BLOC1_2 PF10046.9 gi|284166920|ref|YP_003405199.1| - 0.2 12.0 36.7 0.5 10.7 2.0 5.8 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MAD PF05557.13 gi|284166920|ref|YP_003405199.1| - 0.28 9.5 46.8 0.5 8.7 11.6 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF4200 PF13863.6 gi|284166920|ref|YP_003405199.1| - 0.43 11.0 42.8 0.89 10.0 2.5 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) Csm2_III-A PF03750.13 gi|284166920|ref|YP_003405199.1| - 0.5 11.2 6.3 5 8.0 0.4 3.1 2 1 1 3 3 3 0 Csm2 Type III-A DUF1664 PF07889.12 gi|284166920|ref|YP_003405199.1| - 0.66 10.0 45.3 0.039 14.0 5.2 5.9 3 2 3 7 7 6 0 Protein of unknown function (DUF1664) Nif11 PF07862.11 gi|284166920|ref|YP_003405199.1| - 0.68 10.3 5.2 0.22 11.9 0.4 2.8 2 0 0 2 2 2 0 Nif11 domain DUF3915 PF13054.6 gi|284166920|ref|YP_003405199.1| - 0.69 9.9 3.1 0.39 10.7 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3915) CorA PF01544.18 gi|284166920|ref|YP_003405199.1| - 1.3 8.2 35.6 1.5 8.0 4.5 4.3 1 1 3 4 4 4 0 CorA-like Mg2+ transporter protein AAA_13 PF13166.6 gi|284166920|ref|YP_003405199.1| - 5.5 5.5 46.8 5.3 5.5 22.3 2.9 1 1 2 3 3 3 0 AAA domain DUF489 PF04356.12 gi|284166920|ref|YP_003405199.1| - 6.6 6.7 19.2 0.076 13.0 5.5 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF489) RPW8 PF05659.11 gi|284166920|ref|YP_003405199.1| - 7.6 6.2 17.4 4.1 7.1 0.8 4.8 3 2 4 7 7 7 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 tRNA-synt_1 PF00133.22 gi|284166921|ref|YP_003405200.1| - 1.5e-69 234.9 2.8 1.5e-25 89.5 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|284166921|ref|YP_003405200.1| - 2.1e-56 190.4 0.0 3.5e-56 189.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|284166921|ref|YP_003405200.1| - 3.5e-40 138.0 0.1 5.8e-23 81.3 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|284166921|ref|YP_003405200.1| - 2.8e-16 59.9 0.0 5.3e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|284166921|ref|YP_003405200.1| - 3.3e-09 36.5 0.0 2.2e-06 27.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|284166921|ref|YP_003405200.1| - 7.4e-06 25.1 0.0 0.0016 17.4 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (K) DZR PF12773.7 gi|284166921|ref|YP_003405200.1| - 0.0067 16.4 3.9 0.36 10.9 0.4 2.5 2 1 0 2 2 2 2 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|284166921|ref|YP_003405200.1| - 0.1 12.6 0.0 0.1 12.6 0.0 3.4 3 1 1 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.25 gi|284166921|ref|YP_003405200.1| - 0.14 11.4 0.2 0.44 9.8 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) TF_Zn_Ribbon PF08271.12 gi|284166921|ref|YP_003405200.1| - 2.1 8.0 12.0 6.9 6.3 0.5 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|284166921|ref|YP_003405200.1| - 2.5 7.6 10.1 11 5.6 0.0 3.8 4 0 0 4 4 4 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|284166921|ref|YP_003405200.1| - 6.6 7.0 9.0 4.6 7.5 0.3 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|284166921|ref|YP_003405200.1| - 7.2 6.8 13.6 8.6 6.6 5.5 3.4 3 1 0 3 3 3 0 Zinc ribbon domain HSP20 PF00011.21 gi|284166923|ref|YP_003405202.1| - 6.4e-18 64.8 0.0 7.7e-18 64.5 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|284166923|ref|YP_003405202.1| - 2e-12 46.4 0.0 3e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|284166923|ref|YP_003405202.1| - 0.1 13.0 0.0 0.19 12.1 0.0 1.4 1 1 0 1 1 1 0 PIH1 CS-like domain AhpC-TSA PF00578.21 gi|284166924|ref|YP_003405203.1| - 2.8e-30 104.8 0.0 3.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284166924|ref|YP_003405203.1| - 3.5e-17 62.5 0.0 4.1e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|284166924|ref|YP_003405203.1| - 1.9e-06 28.0 0.0 2.7e-06 27.5 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|284166924|ref|YP_003405203.1| - 0.0011 18.5 0.0 0.0013 18.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) CBS PF00571.28 gi|284166925|ref|YP_003405204.1| - 5.2e-23 81.3 0.7 5.2e-11 42.8 0.1 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.16 gi|284166925|ref|YP_003405204.1| - 0.087 12.9 1.8 14 5.8 0.0 3.0 2 1 1 3 3 3 0 PRC-barrel domain HTH_20 PF12840.7 gi|284166926|ref|YP_003405205.1| - 0.035 14.2 0.3 0.057 13.5 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|284166927|ref|YP_003405206.1| - 3.1e-14 52.5 0.1 5.5e-14 51.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284166927|ref|YP_003405206.1| - 4.5e-09 36.4 2.2 4.5e-09 36.4 2.2 1.5 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|284166927|ref|YP_003405206.1| - 0.0074 16.2 0.3 0.017 15.0 0.3 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|284166927|ref|YP_003405206.1| - 0.018 14.5 0.0 0.046 13.2 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 Sigma70_r3 PF04539.16 gi|284166927|ref|YP_003405206.1| - 0.031 14.4 0.2 0.073 13.2 0.1 1.7 2 0 0 2 2 2 0 Sigma-70 region 3 CBS PF00571.28 gi|284166928|ref|YP_003405207.1| - 7.6e-15 55.1 2.1 1.3e-07 31.9 0.0 3.0 3 0 0 3 3 3 2 CBS domain Peptidase_M50 PF02163.22 gi|284166928|ref|YP_003405207.1| - 7.7e-14 51.6 7.0 2.7e-06 26.8 0.3 2.8 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|284166928|ref|YP_003405207.1| - 0.0016 18.1 14.8 0.0016 18.1 14.8 2.3 2 1 0 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|284166928|ref|YP_003405207.1| - 0.055 13.8 0.7 0.055 13.8 0.7 2.7 2 1 1 3 3 3 0 Putative zincin peptidase PDT PF00800.18 gi|284166929|ref|YP_003405208.1| - 7.5e-48 162.8 0.0 1e-47 162.4 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|284166929|ref|YP_003405208.1| - 4.2e-07 29.6 0.0 1.1e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 ACT domain Bac_globin PF01152.21 gi|284166930|ref|YP_003405209.1| - 6.9e-21 74.6 0.1 7.7e-21 74.5 0.1 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|284166930|ref|YP_003405209.1| - 0.00032 20.6 0.1 0.00069 19.6 0.1 1.5 1 1 0 1 1 1 1 Protoglobin Barstar PF01337.18 gi|284166930|ref|YP_003405209.1| - 0.019 15.0 0.3 0.031 14.3 0.2 1.4 1 1 0 1 1 1 0 Barstar (barnase inhibitor) Porphobil_deam PF01379.20 gi|284166931|ref|YP_003405210.1| - 1.6e-66 223.8 0.1 6.4e-53 179.3 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|284166931|ref|YP_003405210.1| - 8.9e-09 35.6 0.1 2.5e-08 34.1 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_11 PF13531.6 gi|284166931|ref|YP_003405210.1| - 0.2 11.4 4.0 0.49 10.1 0.2 2.8 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein TP_methylase PF00590.20 gi|284166932|ref|YP_003405211.1| - 1.6e-57 194.8 2.0 2e-57 194.6 2.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RFamide_26RFa PF11109.8 gi|284166932|ref|YP_003405211.1| - 0.17 12.4 0.1 0.27 11.7 0.1 1.3 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 HEM4 PF02602.15 gi|284166933|ref|YP_003405212.1| - 7e-43 146.6 3.1 8.3e-43 146.4 3.1 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD BofA PF07441.11 gi|284166934|ref|YP_003405213.1| - 0.00098 19.3 9.6 0.051 13.8 1.1 2.3 1 1 1 2 2 2 2 SigmaK-factor processing regulatory protein BofA PEMT PF04191.13 gi|284166934|ref|YP_003405213.1| - 0.015 15.6 2.4 0.96 9.9 0.3 2.0 1 1 1 2 2 2 0 Phospholipid methyltransferase DHHA1 PF02272.19 gi|284166935|ref|YP_003405214.1| - 2.5e-15 57.1 2.0 6.6e-15 55.7 2.0 1.8 1 1 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|284166935|ref|YP_003405214.1| - 0.027 14.7 0.2 0.054 13.7 0.2 1.5 1 0 0 1 1 1 0 DHH family PHP_C PF13263.6 gi|284166936|ref|YP_003405215.1| - 2.1e-22 78.6 0.4 1e-21 76.4 0.2 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|284166936|ref|YP_003405215.1| - 8.5e-06 26.2 0.0 9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 PHP domain KASH_CCD PF14662.6 gi|284166938|ref|YP_003405217.1| - 0.0066 16.3 1.0 0.01 15.7 1.0 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DUF4589 PF15252.6 gi|284166938|ref|YP_003405217.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4589) DUF5605 PF18310.1 gi|284166940|ref|YP_003405219.1| - 0.062 13.2 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5605) NifU PF01106.17 gi|284166941|ref|YP_003405220.1| - 6.1e-14 51.9 0.0 1e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 NifU-like domain DUF1272 PF06906.11 gi|284166942|ref|YP_003405221.1| - 0.0017 18.4 1.0 0.002 18.2 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) OrfB_Zn_ribbon PF07282.11 gi|284166942|ref|YP_003405221.1| - 0.086 12.8 0.8 0.097 12.6 0.8 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|284166942|ref|YP_003405221.1| - 0.17 12.0 3.4 0.82 9.8 3.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain ApbA_C PF08546.11 gi|284166943|ref|YP_003405222.1| - 1.1e-34 119.3 0.5 1.8e-34 118.6 0.5 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|284166943|ref|YP_003405222.1| - 2.8e-28 98.5 0.1 5.2e-28 97.6 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|284166943|ref|YP_003405222.1| - 0.062 13.6 0.4 0.062 13.6 0.4 2.1 2 2 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Rubredoxin_2 PF18073.1 gi|284166944|ref|YP_003405223.1| - 0.0014 18.3 1.1 0.069 12.9 0.0 2.3 2 0 0 2 2 2 1 Rubredoxin metal binding domain HypA PF01155.19 gi|284166944|ref|YP_003405223.1| - 0.0022 18.0 0.1 0.0034 17.4 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HalOD2 PF18547.1 gi|284166944|ref|YP_003405223.1| - 0.022 14.7 6.5 3.1 7.8 0.6 3.2 2 1 1 3 3 3 0 Halobacterial output domain 2 NRDD PF13597.6 gi|284166944|ref|YP_003405223.1| - 0.041 12.7 0.4 0.062 12.1 0.4 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|284166944|ref|YP_003405223.1| - 0.046 13.7 1.2 0.23 11.5 1.2 1.7 1 1 1 2 2 2 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|284166944|ref|YP_003405223.1| - 0.064 12.9 1.5 0.1 12.3 1.5 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|284166944|ref|YP_003405223.1| - 0.36 11.0 3.7 0.82 9.8 3.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|284166944|ref|YP_003405223.1| - 0.64 9.8 6.2 0.82 9.5 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Abhydrolase_1 PF00561.20 gi|284166945|ref|YP_003405224.1| - 1.2e-23 84.1 0.0 2.8e-15 56.7 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284166945|ref|YP_003405224.1| - 8.7e-23 82.1 1.7 1.1e-22 81.8 1.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284166945|ref|YP_003405224.1| - 5e-15 55.4 0.0 1.5e-08 34.2 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|284166945|ref|YP_003405224.1| - 0.00012 21.9 0.0 0.041 13.7 0.0 2.9 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|284166945|ref|YP_003405224.1| - 0.00019 21.5 0.0 0.00037 20.6 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.20 gi|284166945|ref|YP_003405224.1| - 0.0018 17.9 0.1 0.0034 17.1 0.1 1.4 1 1 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 gi|284166945|ref|YP_003405224.1| - 0.0051 16.3 0.0 0.082 12.4 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 gi|284166945|ref|YP_003405224.1| - 0.023 14.5 0.0 7.8 6.2 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|284166945|ref|YP_003405224.1| - 0.026 14.2 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Ndr PF03096.14 gi|284166945|ref|YP_003405224.1| - 0.038 12.7 0.0 0.12 11.1 0.0 1.6 1 1 0 1 1 1 0 Ndr family DLH PF01738.18 gi|284166945|ref|YP_003405224.1| - 0.19 11.2 0.0 15 5.1 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family Ser_hydrolase PF06821.13 gi|284166945|ref|YP_003405224.1| - 0.2 11.5 0.0 1.3 8.9 0.0 2.0 2 0 0 2 2 2 0 Serine hydrolase PolC_DP2 PF03833.13 gi|284166946|ref|YP_003405225.1| - 0 1316.6 0.0 0 1314.7 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.12 gi|284166946|ref|YP_003405225.1| - 0.054 13.5 14.5 2.2 8.3 10.0 2.8 2 1 0 2 2 2 0 zinc-ribbons HypA PF01155.19 gi|284166946|ref|YP_003405225.1| - 0.11 12.5 18.2 2.3 8.3 0.2 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|284166946|ref|YP_003405225.1| - 0.67 10.0 18.3 6.4 6.9 0.4 3.0 2 1 0 2 2 2 0 Double zinc ribbon Sigma70_ner PF04546.13 gi|284166946|ref|YP_003405225.1| - 0.9 9.4 6.0 3 7.7 6.0 1.9 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF296 PF03479.15 gi|284166947|ref|YP_003405226.1| - 8.6e-19 67.9 0.0 1.1e-18 67.6 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain SBP_bac_5 PF00496.22 gi|284166948|ref|YP_003405227.1| - 3.5e-67 227.0 0.3 4.2e-67 226.7 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|284166949|ref|YP_003405228.1| - 2.9e-41 141.2 10.0 4.3e-41 140.7 7.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PqqD PF05402.12 gi|284166949|ref|YP_003405228.1| - 0.15 12.4 0.0 0.68 10.3 0.0 2.1 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) BPD_transp_1 PF00528.22 gi|284166950|ref|YP_003405229.1| - 8e-31 107.2 9.2 8e-31 107.2 9.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|284166950|ref|YP_003405229.1| - 0.0044 17.0 0.3 0.0044 17.0 0.3 3.3 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|284166951|ref|YP_003405230.1| - 1.2e-26 93.8 0.0 2e-26 93.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284166951|ref|YP_003405230.1| - 9.9e-19 67.6 0.1 1.8e-18 66.8 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284166951|ref|YP_003405230.1| - 5.7e-06 26.4 0.1 5.4e-05 23.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_5 PF07728.14 gi|284166951|ref|YP_003405230.1| - 0.047 13.7 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|284166951|ref|YP_003405230.1| - 0.23 11.4 0.0 0.37 10.7 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|284166952|ref|YP_003405231.1| - 4.2e-32 111.5 0.0 6.2e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284166952|ref|YP_003405231.1| - 2e-17 63.5 0.1 4.2e-17 62.4 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|284166952|ref|YP_003405231.1| - 0.00047 19.7 0.0 0.00067 19.1 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|284166952|ref|YP_003405231.1| - 0.0015 18.5 0.0 1.5 8.6 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284166952|ref|YP_003405231.1| - 0.0043 17.5 0.0 0.0083 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|284166952|ref|YP_003405231.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|284166952|ref|YP_003405231.1| - 0.013 15.7 0.2 0.035 14.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|284166952|ref|YP_003405231.1| - 0.039 13.8 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|284166952|ref|YP_003405231.1| - 0.07 13.5 0.0 0.23 11.9 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284166952|ref|YP_003405231.1| - 0.078 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|284166952|ref|YP_003405231.1| - 0.22 11.9 0.0 0.42 11.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|284166952|ref|YP_003405231.1| - 0.25 10.5 0.0 0.48 9.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Acetyltransf_10 PF13673.7 gi|284166954|ref|YP_003405233.1| - 1.7e-16 60.3 0.0 2.1e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284166954|ref|YP_003405233.1| - 3.1e-14 53.2 0.0 3.8e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284166954|ref|YP_003405233.1| - 4.1e-14 52.7 0.0 5.9e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284166954|ref|YP_003405233.1| - 3.3e-08 34.3 0.0 3.9e-08 34.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284166954|ref|YP_003405233.1| - 3.2e-05 23.8 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|284166954|ref|YP_003405233.1| - 0.00017 21.7 0.1 0.0063 16.6 0.1 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284166954|ref|YP_003405233.1| - 0.0011 19.2 0.0 0.0013 18.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|284166954|ref|YP_003405233.1| - 0.0053 16.9 0.1 0.007 16.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284166954|ref|YP_003405233.1| - 0.065 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.6 gi|284166954|ref|YP_003405233.1| - 0.12 11.8 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 ArsP_2 PF11449.8 gi|284166955|ref|YP_003405234.1| - 8.9e-136 452.8 16.1 1e-135 452.6 16.1 1.0 1 0 0 1 1 1 1 Putative, 10TM heavy-metal exporter CCB1 PF12046.8 gi|284166955|ref|YP_003405234.1| - 0.17 11.3 1.5 0.45 9.9 1.5 1.8 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B PQQ_3 PF13570.6 gi|284166956|ref|YP_003405235.1| - 2.4e-14 53.3 10.8 4.7e-09 36.5 1.0 2.8 3 0 0 3 3 3 2 PQQ-like domain PQQ_2 PF13360.6 gi|284166956|ref|YP_003405235.1| - 2e-11 43.9 1.4 2.9e-11 43.4 1.4 1.2 1 0 0 1 1 1 1 PQQ-like domain PQQ PF01011.21 gi|284166956|ref|YP_003405235.1| - 5.9e-08 32.3 0.4 9.8e-06 25.3 0.1 3.2 3 0 0 3 3 3 1 PQQ enzyme repeat FAM176 PF14851.6 gi|284166956|ref|YP_003405235.1| - 0.031 14.0 0.5 0.045 13.4 0.5 1.2 1 0 0 1 1 1 0 FAM176 family DNA_pol_phi PF04931.13 gi|284166956|ref|YP_003405235.1| - 0.59 8.2 2.9 0.64 8.1 2.9 1.0 1 0 0 1 1 1 0 DNA polymerase phi UvrB_inter PF17757.1 gi|284166957|ref|YP_003405236.1| - 3.2e-31 107.4 0.0 1.1e-30 105.7 0.0 2.0 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|284166957|ref|YP_003405236.1| - 4.9e-19 67.9 0.2 1e-18 66.9 0.2 1.6 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|284166957|ref|YP_003405236.1| - 3.3e-17 62.8 0.1 9.9e-17 61.3 0.1 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|284166957|ref|YP_003405236.1| - 5.7e-10 38.6 7.5 3.7e-09 36.0 7.5 2.5 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.15 gi|284166957|ref|YP_003405236.1| - 5.9e-09 36.2 0.0 3.3e-08 33.7 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF87 PF01935.17 gi|284166957|ref|YP_003405236.1| - 0.00079 19.6 2.9 0.0025 17.9 0.1 2.9 3 1 0 3 3 3 1 Helicase HerA, central domain DEAD PF00270.29 gi|284166957|ref|YP_003405236.1| - 0.0016 18.2 0.0 0.013 15.2 0.0 2.5 3 0 0 3 3 3 1 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|284166957|ref|YP_003405236.1| - 0.016 15.7 0.1 11 6.6 0.1 2.9 3 0 0 3 3 3 0 ABC transporter AAA_19 PF13245.6 gi|284166957|ref|YP_003405236.1| - 0.022 15.1 0.0 9.8 6.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|284166957|ref|YP_003405236.1| - 0.028 14.1 0.1 0.27 10.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain UB2H PF14814.6 gi|284166957|ref|YP_003405236.1| - 0.028 14.4 0.1 0.091 12.8 0.0 1.9 2 0 0 2 2 2 0 Bifunctional transglycosylase second domain Spore_III_AF PF09581.10 gi|284166957|ref|YP_003405236.1| - 0.45 10.5 2.7 1 9.3 0.2 2.4 2 0 0 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) HBM PF16591.5 gi|284166958|ref|YP_003405237.1| - 0.00019 20.9 4.3 0.017 14.5 0.2 2.0 2 0 0 2 2 2 2 Helical bimodular sensor domain Cytochrom_B562 PF07361.11 gi|284166958|ref|YP_003405237.1| - 0.0012 19.4 1.4 0.0071 17.0 1.1 1.8 1 1 0 1 1 1 1 Cytochrome b562 Halo_GVPC PF05465.13 gi|284166958|ref|YP_003405237.1| - 0.0022 18.2 6.7 0.0032 17.7 2.2 2.4 2 0 0 2 2 2 1 Halobacterial gas vesicle protein C (GVPC) repeat Apolipoprotein PF01442.18 gi|284166958|ref|YP_003405237.1| - 0.0039 17.1 6.5 0.0048 16.8 6.5 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain SCAB_CC PF16712.5 gi|284166958|ref|YP_003405237.1| - 0.0046 16.8 0.9 0.0081 16.0 0.1 1.7 2 0 0 2 2 2 1 Coiled-coil regions of plant-specific actin-binding protein DUF883 PF05957.13 gi|284166958|ref|YP_003405237.1| - 0.025 15.2 5.8 0.58 10.8 0.3 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|284166958|ref|YP_003405237.1| - 0.059 13.9 6.3 3.6 8.2 6.3 2.2 1 1 0 1 1 1 0 YtxH-like protein Hemerythrin PF01814.23 gi|284166958|ref|YP_003405237.1| - 0.33 11.6 5.8 5.9 7.5 0.7 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain V-ATPase_G PF03179.15 gi|284166958|ref|YP_003405237.1| - 0.35 11.4 5.4 0.73 10.4 1.6 2.1 2 0 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit acVLRF1 PF18859.1 gi|284166958|ref|YP_003405237.1| - 0.4 11.0 4.7 0.47 10.7 4.7 1.0 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor DUF2267 PF10025.9 gi|284166959|ref|YP_003405238.1| - 2.3e-23 82.8 7.2 2.9e-23 82.5 7.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) 3HCDH_RFF PF18321.1 gi|284166959|ref|YP_003405238.1| - 0.025 15.0 1.0 0.1 13.0 0.5 2.3 2 1 0 2 2 2 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DUF2015 PF09435.10 gi|284166959|ref|YP_003405238.1| - 0.044 13.6 0.1 0.053 13.4 0.1 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF2015) NPFF PF15085.6 gi|284166959|ref|YP_003405238.1| - 0.067 13.5 0.3 0.14 12.6 0.2 1.6 1 1 0 1 1 1 0 Neuropeptide FF PqqD PF05402.12 gi|284166959|ref|YP_003405238.1| - 0.072 13.4 1.0 0.3 11.4 0.1 2.2 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) FliG_N PF14842.6 gi|284166959|ref|YP_003405238.1| - 0.27 11.8 3.1 13 6.4 0.3 2.3 2 1 0 2 2 2 0 FliG N-terminal domain PSK_trans_fac PF07704.11 gi|284166959|ref|YP_003405238.1| - 5.1 7.9 9.4 15 6.4 1.2 2.3 1 1 1 2 2 2 0 Rv0623-like transcription factor DUF2267 PF10025.9 gi|284166960|ref|YP_003405239.1| - 1.2e-14 54.7 1.1 1.4e-14 54.4 1.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Acetyltransf_6 PF13480.7 gi|284166961|ref|YP_003405240.1| - 0.032 14.4 0.4 12 6.0 0.1 2.9 1 1 2 3 3 3 0 Acetyltransferase (GNAT) domain BiPBP_C PF06832.12 gi|284166962|ref|YP_003405241.1| - 0.0084 16.1 0.1 0.31 11.1 0.0 2.2 1 1 1 2 2 2 2 Penicillin-Binding Protein C-terminus Family DoxX PF07681.12 gi|284166963|ref|YP_003405242.1| - 5.5e-15 55.7 16.4 7.5e-14 52.1 12.5 2.1 2 0 0 2 2 2 2 DoxX HR_lesion PF05514.11 gi|284166963|ref|YP_003405242.1| - 0.00017 21.8 0.4 0.00055 20.1 0.1 1.7 1 1 1 2 2 2 1 HR-like lesion-inducing SURF4 PF02077.15 gi|284166963|ref|YP_003405242.1| - 0.0046 16.6 0.1 0.0062 16.2 0.1 1.1 1 0 0 1 1 1 1 SURF4 family CBS PF00571.28 gi|284166965|ref|YP_003405244.1| - 4.8e-34 116.6 10.3 6.4e-12 45.7 0.7 4.1 4 0 0 4 4 4 4 CBS domain HGTP_anticodon PF03129.20 gi|284166966|ref|YP_003405245.1| - 1.4e-22 79.6 0.2 3.5e-22 78.3 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|284166966|ref|YP_003405245.1| - 7.4e-09 35.8 0.0 7.1e-08 32.6 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|284166966|ref|YP_003405245.1| - 0.0023 17.3 0.3 2.4 7.7 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284166966|ref|YP_003405245.1| - 0.05 13.7 0.4 9.4 6.5 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_L32p PF01783.23 gi|284166966|ref|YP_003405245.1| - 0.066 13.5 0.1 2.1 8.6 0.0 2.9 3 0 0 3 3 3 0 Ribosomal L32p protein family zinc_ribbon_2 PF13240.6 gi|284166966|ref|YP_003405245.1| - 0.11 12.2 1.5 12 5.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Nif11 PF07862.11 gi|284166966|ref|YP_003405245.1| - 0.11 12.8 0.3 0.33 11.3 0.0 1.9 2 0 0 2 2 2 0 Nif11 domain zf-NADH-PPase PF09297.11 gi|284166966|ref|YP_003405245.1| - 0.15 11.8 1.4 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|284166966|ref|YP_003405245.1| - 0.29 11.1 0.8 4.1 7.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|284166966|ref|YP_003405245.1| - 0.69 9.5 6.8 0.72 9.4 1.9 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding FmdA_AmdA PF03069.15 gi|284166967|ref|YP_003405246.1| - 1.7e-70 237.8 0.0 6.7e-38 130.5 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family BAT PF15915.5 gi|284166968|ref|YP_003405247.1| - 3.2e-19 69.3 4.2 7.1e-19 68.2 4.2 1.6 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284166968|ref|YP_003405247.1| - 2e-18 65.9 0.0 3.4e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|284166968|ref|YP_003405247.1| - 1.6e-15 57.3 0.1 3.8e-15 56.1 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|284166968|ref|YP_003405247.1| - 1.6e-11 44.2 0.0 4e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|284166968|ref|YP_003405247.1| - 2e-09 37.6 0.0 3.6e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|284166968|ref|YP_003405247.1| - 3.5e-08 33.6 0.0 2.4e-07 30.9 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|284166968|ref|YP_003405247.1| - 0.0048 16.9 0.0 0.015 15.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain HTH_11 PF08279.12 gi|284166968|ref|YP_003405247.1| - 0.023 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.16 gi|284166968|ref|YP_003405247.1| - 0.047 13.2 0.0 0.22 11.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|284166968|ref|YP_003405247.1| - 0.085 12.9 0.3 0.35 11.0 0.0 2.3 2 1 1 3 3 3 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|284166968|ref|YP_003405247.1| - 0.1 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_24 PF13412.6 gi|284166968|ref|YP_003405247.1| - 0.17 11.4 0.0 0.59 9.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HalOD1 PF18545.1 gi|284166969|ref|YP_003405248.1| - 6.4e-19 68.0 1.8 1e-18 67.3 1.8 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 PqiA PF04403.13 gi|284166970|ref|YP_003405249.1| - 0.053 13.3 4.1 0.25 11.2 2.2 2.1 2 0 0 2 2 2 0 Paraquat-inducible protein A ABC2_membrane_2 PF12679.7 gi|284166971|ref|YP_003405250.1| - 2.7e-30 105.7 18.8 1.3e-29 103.4 18.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284166971|ref|YP_003405250.1| - 8.5e-08 31.7 15.5 1.1e-07 31.4 15.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284166971|ref|YP_003405250.1| - 4e-05 23.3 4.1 4e-05 23.3 4.1 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|284166971|ref|YP_003405250.1| - 0.00062 19.3 20.1 0.0062 16.0 20.1 2.2 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|284166971|ref|YP_003405250.1| - 0.29 11.1 13.5 0.82 9.6 13.0 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|284166972|ref|YP_003405251.1| - 1.1e-25 90.8 0.0 1.7e-25 90.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284166972|ref|YP_003405251.1| - 2e-12 47.5 0.0 1.8e-07 31.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284166972|ref|YP_003405251.1| - 0.00075 20.2 0.0 0.0031 18.2 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|284166972|ref|YP_003405251.1| - 0.0034 17.9 0.1 0.0052 17.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284166972|ref|YP_003405251.1| - 0.0041 16.8 0.1 0.0079 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|284166972|ref|YP_003405251.1| - 0.012 15.1 0.0 4.5 6.6 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|284166972|ref|YP_003405251.1| - 0.018 14.8 0.0 0.11 12.2 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|284166972|ref|YP_003405251.1| - 0.037 14.4 0.0 0.073 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284166972|ref|YP_003405251.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase MFS_1 PF07690.16 gi|284166973|ref|YP_003405252.1| - 5.8e-42 143.9 71.1 7.7e-37 127.0 45.8 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284166973|ref|YP_003405252.1| - 1.3e-09 37.5 14.8 3e-07 29.7 14.6 2.2 1 1 0 1 1 1 1 MFS_1 like family LacY_symp PF01306.19 gi|284166973|ref|YP_003405252.1| - 2.9e-05 23.1 10.1 4.4e-05 22.4 4.4 2.4 2 1 0 2 2 2 2 LacY proton/sugar symporter PP_kinase_C_1 PF17941.1 gi|284166975|ref|YP_003405254.1| - 3.2e-73 244.8 0.1 2.4e-72 241.9 0.1 2.2 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|284166975|ref|YP_003405254.1| - 9.3e-67 223.8 0.1 7.4e-65 217.6 0.0 2.3 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|284166975|ref|YP_003405254.1| - 1.7e-64 217.2 3.1 2.8e-64 216.4 3.1 1.4 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|284166975|ref|YP_003405254.1| - 2.2e-36 124.4 0.1 7.9e-36 122.6 0.1 2.0 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|284166975|ref|YP_003405254.1| - 6e-15 55.3 0.0 3.9e-07 30.0 0.1 2.6 2 0 0 2 2 2 2 PLD-like domain DUF1062 PF06353.12 gi|284166975|ref|YP_003405254.1| - 0.24 12.2 1.4 21 6.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1062) MR_MLE_C PF13378.6 gi|284166975|ref|YP_003405254.1| - 0.29 10.7 3.7 0.16 11.5 0.4 2.1 2 0 0 2 2 2 0 Enolase C-terminal domain-like Metallophos PF00149.28 gi|284166976|ref|YP_003405255.1| - 1.9e-10 41.6 0.2 3.1e-10 40.9 0.2 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|284166976|ref|YP_003405255.1| - 3.1e-07 30.8 0.0 4.2e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|284166976|ref|YP_003405255.1| - 0.2 10.9 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF1018 PF06252.12 gi|284166977|ref|YP_003405256.1| - 0.044 14.8 0.0 0.083 13.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1018) TspO_MBR PF03073.15 gi|284166978|ref|YP_003405257.1| - 5e-43 146.4 19.3 5.8e-43 146.2 19.3 1.0 1 0 0 1 1 1 1 TspO/MBR family Cyd_oper_YbgE PF09600.10 gi|284166978|ref|YP_003405257.1| - 0.0077 16.6 7.4 0.0077 16.6 7.4 2.1 3 0 0 3 3 3 1 Cyd operon protein YbgE (Cyd_oper_YbgE) CcmF_C PF16327.5 gi|284166978|ref|YP_003405257.1| - 0.022 14.0 6.4 0.031 13.6 6.4 1.2 1 0 0 1 1 1 0 Cytochrome c-type biogenesis protein CcmF C-terminal MHYT PF03707.16 gi|284166978|ref|YP_003405257.1| - 9.5 6.5 16.4 1.7 8.9 2.8 3.3 1 1 3 4 4 4 0 Bacterial signalling protein N terminal repeat ERCC4 PF02732.15 gi|284166979|ref|YP_003405258.1| - 6.6e-23 81.6 0.0 1.5e-22 80.5 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|284166979|ref|YP_003405258.1| - 1.1e-22 80.5 0.0 1.5e-21 76.8 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|284166979|ref|YP_003405258.1| - 1.7e-14 54.0 0.0 5.3e-14 52.4 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|284166979|ref|YP_003405258.1| - 1.8e-11 44.3 0.0 4.6e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|284166979|ref|YP_003405258.1| - 6.2e-10 39.5 1.6 1.9e-09 38.0 0.3 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|284166979|ref|YP_003405258.1| - 1.5e-09 37.8 0.2 6.4e-09 35.8 0.2 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|284166979|ref|YP_003405258.1| - 2.6e-05 23.9 2.0 0.0014 18.4 0.2 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif MEDS PF14417.6 gi|284166979|ref|YP_003405258.1| - 0.014 15.2 0.3 4.3 7.2 0.2 2.8 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 5_3_exonuc PF01367.20 gi|284166979|ref|YP_003405258.1| - 0.017 15.7 0.0 0.086 13.5 0.0 2.3 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.6 gi|284166979|ref|YP_003405258.1| - 0.057 13.6 0.1 0.28 11.3 0.0 2.2 1 1 0 1 1 1 0 Helicase C-terminal domain RuvB_N PF05496.12 gi|284166979|ref|YP_003405258.1| - 0.059 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF4407 PF14362.6 gi|284166979|ref|YP_003405258.1| - 1 8.7 5.2 3.3 7.0 1.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|284166979|ref|YP_003405258.1| - 1.1 9.6 10.2 1.2 9.6 5.7 2.5 2 0 0 2 2 2 0 Fez1 PAP2_3 PF14378.6 gi|284166980|ref|YP_003405259.1| - 2.6e-20 72.9 13.3 4.5e-20 72.1 13.3 1.4 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|284166980|ref|YP_003405259.1| - 2.3e-12 46.8 8.7 3.2e-12 46.4 7.1 2.1 1 1 1 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|284166980|ref|YP_003405259.1| - 0.015 15.8 1.0 0.015 15.8 1.0 2.3 2 0 0 2 2 2 0 PAP2 superfamily C-terminal DUF1772 PF08592.11 gi|284166980|ref|YP_003405259.1| - 1.2 9.4 16.0 1.2 9.5 2.2 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF1772) Cu-oxidase_2 PF07731.14 gi|284166981|ref|YP_003405260.1| - 5.7e-28 97.4 18.0 2.9e-18 65.9 3.3 3.2 3 1 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|284166981|ref|YP_003405260.1| - 1.1e-21 77.1 9.4 7.5e-19 67.9 1.7 2.7 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|284166981|ref|YP_003405260.1| - 5.3e-12 46.1 0.1 1.4e-11 44.8 0.0 1.6 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|284166981|ref|YP_003405260.1| - 0.0011 19.0 0.0 0.36 11.0 0.0 2.7 2 1 0 2 2 2 2 Cupredoxin-like domain Auto_anti-p27 PF06677.12 gi|284166982|ref|YP_003405261.1| - 1.3e-12 47.6 1.7 1.9e-12 47.1 1.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|284166982|ref|YP_003405261.1| - 0.0073 16.3 0.9 0.017 15.1 0.9 1.6 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284166982|ref|YP_003405261.1| - 0.29 11.3 1.8 0.77 9.9 1.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|284166982|ref|YP_003405261.1| - 0.69 9.7 4.2 1.4 8.7 4.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain LDcluster4 PF18306.1 gi|284166983|ref|YP_003405262.1| - 9.5e-37 126.0 4.9 1.1e-36 125.8 4.9 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|284166983|ref|YP_003405262.1| - 4.7e-07 30.0 0.1 7.9e-07 29.2 0.1 1.3 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|284166983|ref|YP_003405262.1| - 0.0017 17.6 3.2 0.0029 16.9 3.2 1.3 1 0 0 1 1 1 1 DNA recombination-mediator protein A Ldh_1_N PF00056.23 gi|284166984|ref|YP_003405263.1| - 2.5e-40 137.8 0.5 3.6e-40 137.3 0.5 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|284166984|ref|YP_003405263.1| - 4.8e-28 98.2 0.0 7.7e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain p450 PF00067.22 gi|284166985|ref|YP_003405264.1| - 2.5e-80 270.5 0.0 3e-80 270.2 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 HTH_10 PF04967.12 gi|284166986|ref|YP_003405265.1| - 5.3e-15 54.9 0.2 1.9e-14 53.2 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_1 PF00126.27 gi|284166986|ref|YP_003405265.1| - 0.011 15.7 0.8 0.023 14.6 0.8 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|284166986|ref|YP_003405265.1| - 0.052 13.1 0.8 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Dimerisation2 PF16864.5 gi|284166986|ref|YP_003405265.1| - 0.1 12.6 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Dimerisation domain Radical_SAM PF04055.21 gi|284166986|ref|YP_003405265.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.3 1 1 0 1 1 1 0 Radical SAM superfamily Fer4_15 PF13459.6 gi|284166987|ref|YP_003405266.1| - 4.4e-19 69.0 1.9 5.2e-19 68.8 1.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|284166987|ref|YP_003405266.1| - 8.1e-06 26.3 0.5 1.7e-05 25.3 0.5 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|284166987|ref|YP_003405266.1| - 0.045 13.6 2.1 3.5 7.6 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|284166987|ref|YP_003405266.1| - 0.056 13.5 0.2 0.26 11.4 0.2 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|284166987|ref|YP_003405266.1| - 0.2 11.8 1.2 3 8.1 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Methyltransf_25 PF13649.6 gi|284166988|ref|YP_003405267.1| - 3.5e-12 46.9 0.0 1.3e-11 45.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284166988|ref|YP_003405267.1| - 3.1e-11 43.8 0.1 7e-11 42.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284166988|ref|YP_003405267.1| - 7.1e-07 29.1 0.0 1.9e-06 27.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|284166988|ref|YP_003405267.1| - 4.2e-06 26.6 0.0 6.3e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_12 PF08242.12 gi|284166988|ref|YP_003405267.1| - 2.2e-05 25.1 0.0 9.6e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284166988|ref|YP_003405267.1| - 9.6e-05 22.3 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|284166988|ref|YP_003405267.1| - 0.00023 20.5 0.0 0.00034 20.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|284166988|ref|YP_003405267.1| - 0.0015 18.1 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|284166988|ref|YP_003405267.1| - 0.02 14.4 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|284166988|ref|YP_003405267.1| - 0.096 11.6 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|284166988|ref|YP_003405267.1| - 0.1 11.7 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_32 PF13679.6 gi|284166988|ref|YP_003405267.1| - 0.21 11.6 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PHO4 PF01384.20 gi|284166989|ref|YP_003405268.1| - 2.8e-38 131.8 26.8 4.1e-38 131.3 26.8 1.2 1 0 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|284166990|ref|YP_003405269.1| - 1.8e-13 51.2 0.7 2.1e-13 51.0 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family MgtE PF01769.16 gi|284166991|ref|YP_003405270.1| - 6.4e-26 91.2 11.7 1.1e-25 90.5 11.7 1.4 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.17 gi|284166991|ref|YP_003405270.1| - 3.7e-15 56.4 1.1 3.7e-15 56.4 1.1 2.0 3 0 0 3 3 3 1 MgtE intracellular N domain CBS PF00571.28 gi|284166991|ref|YP_003405270.1| - 1.2e-07 32.1 4.9 0.00034 21.0 0.3 3.1 3 0 0 3 3 3 2 CBS domain CwsA PF10814.8 gi|284166991|ref|YP_003405270.1| - 0.066 13.4 0.1 2 8.6 0.0 3.0 3 0 0 3 3 3 0 Cell wall synthesis protein CwsA DEAD PF00270.29 gi|284166992|ref|YP_003405271.1| - 2.4e-22 79.5 0.0 4.2e-22 78.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|284166992|ref|YP_003405271.1| - 1.2e-08 35.5 0.3 4.7e-08 33.5 0.3 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|284166992|ref|YP_003405271.1| - 2.7e-08 34.0 0.0 4.8e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|284166992|ref|YP_003405271.1| - 2.8e-07 30.9 0.0 3.3e-06 27.4 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|284166992|ref|YP_003405271.1| - 0.00028 20.7 0.0 0.00078 19.2 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|284166992|ref|YP_003405271.1| - 0.034 14.0 0.0 2 8.4 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif MarR PF01047.22 gi|284166992|ref|YP_003405271.1| - 0.052 13.5 0.1 2.6 8.1 0.0 2.6 2 0 0 2 2 2 0 MarR family CGI-121 PF08617.10 gi|284166993|ref|YP_003405272.1| - 1.2e-09 38.5 0.0 1.4e-09 38.3 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PGDYG PF14083.6 gi|284166993|ref|YP_003405272.1| - 0.041 14.1 0.0 0.066 13.4 0.0 1.3 1 0 0 1 1 1 0 PGDYG protein MDMPI_C PF07398.11 gi|284166993|ref|YP_003405272.1| - 2 9.3 11.2 0.56 11.1 2.2 2.4 2 1 0 2 2 2 0 MDMPI C-terminal domain FeS_assembly_P PF01883.19 gi|284166994|ref|YP_003405273.1| - 2.3e-16 59.7 0.1 4.8e-16 58.7 0.1 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein Amidohydro_2 PF04909.14 gi|284166995|ref|YP_003405274.1| - 4.7e-41 141.5 4.1 5.7e-41 141.2 4.1 1.1 1 0 0 1 1 1 1 Amidohydrolase ADH_N PF08240.12 gi|284166996|ref|YP_003405275.1| - 3.1e-28 97.8 1.8 4.9e-28 97.2 0.3 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284166996|ref|YP_003405275.1| - 2e-21 76.3 2.0 3.3e-21 75.6 0.6 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284166996|ref|YP_003405275.1| - 6.2e-08 33.8 1.2 1e-07 33.1 1.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TP_methylase PF00590.20 gi|284166996|ref|YP_003405275.1| - 0.0055 16.7 1.1 0.028 14.4 0.6 2.1 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|284166996|ref|YP_003405275.1| - 0.063 13.1 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Methyltransferase domain A2L_zn_ribbon PF08792.10 gi|284166997|ref|YP_003405276.1| - 0.035 13.8 0.6 6.9 6.5 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RING_7 PF02591.15 gi|284166997|ref|YP_003405276.1| - 0.26 11.5 4.8 1.8 8.8 0.5 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Oxidored_FMN PF00724.20 gi|284166998|ref|YP_003405277.1| - 3e-37 128.7 0.0 1.9e-34 119.5 0.0 2.2 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|284166998|ref|YP_003405277.1| - 0.079 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein Dus PF01207.17 gi|284166998|ref|YP_003405277.1| - 0.1 11.7 0.0 0.2 10.7 0.0 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Rhodanese PF00581.20 gi|284166999|ref|YP_003405278.1| - 8.7e-08 32.7 0.2 1.9e-07 31.6 0.2 1.5 1 0 0 1 1 1 1 Rhodanese-like domain TAT_signal PF10518.9 gi|284166999|ref|YP_003405278.1| - 0.0017 18.1 1.1 0.0029 17.4 1.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pex24p PF06398.11 gi|284167000|ref|YP_003405279.1| - 0.092 11.7 1.7 0.11 11.4 1.7 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin HNH PF01844.23 gi|284167000|ref|YP_003405279.1| - 0.5 10.6 10.0 6.1 7.1 10.0 2.3 1 1 0 1 1 1 0 HNH endonuclease IMP_cyclohyd PF07826.11 gi|284167001|ref|YP_003405280.1| - 7.6e-63 211.6 0.0 8.9e-63 211.4 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.7 gi|284167002|ref|YP_003405281.1| - 1.5e-32 113.0 0.0 1.9e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|284167002|ref|YP_003405281.1| - 5.8e-11 43.3 1.3 6.1e-10 39.9 1.3 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|284167002|ref|YP_003405281.1| - 0.035 13.4 0.3 0.079 12.3 0.1 1.6 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Hexapep PF00132.24 gi|284167003|ref|YP_003405282.1| - 4.3e-14 51.6 9.8 8.6e-08 31.6 0.1 3.5 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284167003|ref|YP_003405282.1| - 7.2e-08 32.1 7.7 1.1e-05 25.1 0.9 3.4 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|284167003|ref|YP_003405282.1| - 4.5e-05 23.8 0.0 6.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal MspA PF09203.11 gi|284167003|ref|YP_003405282.1| - 0.0091 15.9 0.4 0.013 15.3 0.4 1.2 1 0 0 1 1 1 1 MspA Terminase_GpA PF05876.12 gi|284167004|ref|YP_003405283.1| - 0.0031 16.1 0.2 0.0032 16.1 0.2 1.2 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DNA_ligase_ZBD PF03119.16 gi|284167004|ref|YP_003405283.1| - 0.23 11.5 1.9 0.34 11.0 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PGM_PMM_I PF02878.16 gi|284167005|ref|YP_003405284.1| - 2.6e-36 124.4 0.0 4.7e-36 123.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|284167005|ref|YP_003405284.1| - 1.5e-25 89.6 0.1 2.8e-25 88.7 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|284167005|ref|YP_003405284.1| - 6e-24 84.6 0.1 1.7e-23 83.2 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|284167005|ref|YP_003405284.1| - 4.7e-15 55.5 0.2 1.3e-14 54.1 0.2 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain FMN_red PF03358.15 gi|284167006|ref|YP_003405285.1| - 2.2e-30 105.5 0.0 2.6e-30 105.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|284167006|ref|YP_003405285.1| - 5.1e-10 39.4 0.0 7.5e-10 38.8 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|284167006|ref|YP_003405285.1| - 0.059 13.6 0.0 0.13 12.5 0.0 1.5 2 0 0 2 2 2 0 Flavodoxin domain DUF4705 PF15788.5 gi|284167007|ref|YP_003405286.1| - 0.063 13.5 0.8 0.13 12.5 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4705) GIY-YIG PF01541.24 gi|284167008|ref|YP_003405287.1| - 3.7e-17 62.4 0.1 4.4e-17 62.1 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain DZR PF12773.7 gi|284167009|ref|YP_003405288.1| - 0.0062 16.5 0.5 0.0077 16.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|284167009|ref|YP_003405288.1| - 0.026 14.9 1.0 0.028 14.8 1.0 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF3268 PF11672.8 gi|284167009|ref|YP_003405288.1| - 0.048 14.0 0.2 0.048 14.0 0.2 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|284167009|ref|YP_003405288.1| - 0.3 11.3 3.0 1 9.5 3.0 1.8 1 1 0 1 1 1 0 Zinc ribbon domain AIRC PF00731.20 gi|284167010|ref|YP_003405289.1| - 4.1e-13 49.1 1.6 7.3e-13 48.3 1.6 1.4 1 0 0 1 1 1 1 AIR carboxylase DUF1931 PF09123.11 gi|284167011|ref|YP_003405290.1| - 4e-05 23.7 1.3 4.4e-05 23.6 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|284167011|ref|YP_003405290.1| - 0.00058 20.1 0.1 0.0009 19.5 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|284167011|ref|YP_003405290.1| - 0.037 14.4 0.1 0.037 14.4 0.1 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 DUF1830 PF08865.11 gi|284167013|ref|YP_003405292.1| - 0.25 11.4 0.0 0.41 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1830) Rib_5-P_isom_A PF06026.14 gi|284167014|ref|YP_003405293.1| - 8.3e-64 214.3 0.0 1e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|284167014|ref|YP_003405293.1| - 8.8e-05 22.5 0.1 0.0068 16.4 0.0 2.2 2 0 0 2 2 2 2 DeoR C terminal sensor domain ABC2_membrane_2 PF12679.7 gi|284167015|ref|YP_003405294.1| - 5.4e-44 150.6 13.0 7.8e-44 150.1 13.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284167015|ref|YP_003405294.1| - 1.1e-08 34.6 19.1 1.3e-08 34.4 19.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284167015|ref|YP_003405294.1| - 7.1e-07 29.4 10.0 2.4e-06 27.6 9.9 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|284167015|ref|YP_003405294.1| - 2.9e-05 23.6 13.3 2.9e-05 23.6 13.3 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|284167015|ref|YP_003405294.1| - 0.00019 21.0 9.4 0.00043 19.9 9.4 1.6 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF5366 PF17328.2 gi|284167015|ref|YP_003405294.1| - 0.12 12.5 10.0 0.24 11.5 10.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5366) ABC_tran PF00005.27 gi|284167016|ref|YP_003405295.1| - 1.2e-27 97.1 0.0 1.9e-27 96.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284167016|ref|YP_003405295.1| - 5.3e-13 49.5 0.2 9.2e-09 35.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|284167016|ref|YP_003405295.1| - 2e-07 31.6 0.1 2.8e-06 27.9 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|284167016|ref|YP_003405295.1| - 6.1e-05 22.8 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284167016|ref|YP_003405295.1| - 0.00045 19.7 0.0 0.089 12.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|284167016|ref|YP_003405295.1| - 0.011 16.2 0.0 0.017 15.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|284167016|ref|YP_003405295.1| - 0.025 14.5 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|284167016|ref|YP_003405295.1| - 0.04 14.3 0.3 0.094 13.1 0.3 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|284167016|ref|YP_003405295.1| - 0.056 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|284167016|ref|YP_003405295.1| - 0.065 12.9 0.0 2.1 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|284167016|ref|YP_003405295.1| - 0.11 12.1 0.0 0.29 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|284167016|ref|YP_003405295.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_10 PF12846.7 gi|284167016|ref|YP_003405295.1| - 0.2 10.5 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.27 gi|284167017|ref|YP_003405296.1| - 8e-33 113.9 0.0 1.2e-32 113.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|284167017|ref|YP_003405296.1| - 1e-06 28.3 0.0 0.0085 15.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284167017|ref|YP_003405296.1| - 1.8e-05 24.4 0.1 3.7e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|284167017|ref|YP_003405296.1| - 3.9e-05 23.6 0.1 0.19 11.5 0.0 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|284167017|ref|YP_003405296.1| - 0.00068 20.0 0.4 0.0019 18.6 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284167017|ref|YP_003405296.1| - 0.0022 17.9 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|284167017|ref|YP_003405296.1| - 0.013 15.8 0.7 0.043 14.1 0.4 2.2 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|284167017|ref|YP_003405296.1| - 0.013 15.6 2.0 0.19 11.8 2.0 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|284167017|ref|YP_003405296.1| - 0.031 13.8 1.7 0.13 11.8 1.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284167017|ref|YP_003405296.1| - 0.033 14.4 0.8 0.11 12.6 0.8 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284167017|ref|YP_003405296.1| - 0.036 14.6 0.0 0.071 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|284167017|ref|YP_003405296.1| - 0.065 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|284167017|ref|YP_003405296.1| - 0.1 11.6 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_30 PF13604.6 gi|284167017|ref|YP_003405296.1| - 0.6 9.8 4.4 0.09 12.5 0.3 1.9 2 1 0 2 2 2 0 AAA domain MacB_PCD PF12704.7 gi|284167018|ref|YP_003405297.1| - 1.8e-21 77.4 1.6 1.8e-21 77.4 1.6 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|284167018|ref|YP_003405297.1| - 1.9e-14 53.9 2.5 1.9e-14 53.9 2.5 2.9 3 0 0 3 3 3 1 FtsX-like permease family HRG PF16954.5 gi|284167018|ref|YP_003405297.1| - 0.57 10.6 0.0 0.57 10.6 0.0 2.9 4 0 0 4 4 4 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene MgtE PF01769.16 gi|284167018|ref|YP_003405297.1| - 3.7 7.9 11.0 1.2 9.6 6.5 2.1 2 1 0 2 2 2 0 Divalent cation transporter FUSC_2 PF13515.6 gi|284167018|ref|YP_003405297.1| - 3.9 7.6 11.6 1.3 9.2 5.9 2.5 2 0 0 2 2 2 0 Fusaric acid resistance protein-like DUF5518 PF17647.1 gi|284167019|ref|YP_003405298.1| - 9.6e-16 58.0 33.7 1.1e-15 57.8 33.7 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Rick_17kDa_Anti PF05433.15 gi|284167019|ref|YP_003405298.1| - 0.0085 15.9 16.5 0.4 10.6 7.8 3.4 3 0 0 3 3 3 2 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|284167019|ref|YP_003405298.1| - 6.6 6.6 21.6 0.71 9.7 8.2 3.2 3 0 0 3 3 3 0 YMGG-like Gly-zipper AI-2E_transport PF01594.16 gi|284167020|ref|YP_003405299.1| - 6.1e-31 107.8 36.4 4.7e-30 104.9 36.4 1.9 1 1 0 1 1 1 1 AI-2E family transporter MARVEL PF01284.23 gi|284167021|ref|YP_003405300.1| - 0.012 15.7 3.4 0.012 15.7 3.4 1.7 1 1 1 2 2 2 0 Membrane-associating domain CPP1-like PF11833.8 gi|284167021|ref|YP_003405300.1| - 0.066 12.9 3.6 0.088 12.5 3.6 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like LptF_LptG PF03739.14 gi|284167021|ref|YP_003405300.1| - 2.1 7.1 5.6 1.1 8.0 3.3 1.6 1 1 1 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG Helicase_C_2 PF13307.6 gi|284167022|ref|YP_003405301.1| - 1e-32 113.6 0.0 2e-32 112.7 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|284167022|ref|YP_003405301.1| - 9.9e-05 22.0 0.0 0.00023 20.8 0.0 1.7 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|284167022|ref|YP_003405301.1| - 0.0028 17.4 0.0 0.43 10.3 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.16 gi|284167022|ref|YP_003405301.1| - 0.0042 16.6 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DUF2075 PF09848.9 gi|284167022|ref|YP_003405301.1| - 0.0091 15.3 0.0 0.037 13.3 0.0 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|284167022|ref|YP_003405301.1| - 0.0095 16.0 0.0 0.044 13.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Uds1 PF15456.6 gi|284167022|ref|YP_003405301.1| - 0.058 13.6 1.2 0.077 13.2 0.2 1.7 2 0 0 2 2 2 0 Up-regulated During Septation HBB PF06777.11 gi|284167022|ref|YP_003405301.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Helical and beta-bridge domain CPBP PF02517.16 gi|284167023|ref|YP_003405302.1| - 1.2e-11 44.8 5.8 1.2e-11 44.8 5.8 2.1 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease DUF371 PF04027.13 gi|284167024|ref|YP_003405303.1| - 0.032 14.2 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF371) RNA_pol_Rpb5_C PF01191.19 gi|284167024|ref|YP_003405303.1| - 0.059 13.2 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain DUF1684 PF07920.11 gi|284167026|ref|YP_003405305.1| - 5.1e-49 166.2 0.1 7.7e-49 165.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Methyltransf_11 PF08241.12 gi|284167027|ref|YP_003405306.1| - 7.9e-25 87.3 0.0 1.4e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284167027|ref|YP_003405306.1| - 4.9e-21 75.2 0.0 1.1e-20 74.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284167027|ref|YP_003405306.1| - 2.2e-18 66.5 0.0 2.4e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284167027|ref|YP_003405306.1| - 8.2e-12 44.9 0.0 2.2e-11 43.6 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284167027|ref|YP_003405306.1| - 9.5e-12 45.1 0.0 1.3e-11 44.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167027|ref|YP_003405306.1| - 1.5e-11 44.9 0.0 2.4e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|284167027|ref|YP_003405306.1| - 0.00036 19.5 0.0 0.00055 18.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|284167027|ref|YP_003405306.1| - 0.00047 20.2 0.0 0.00077 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|284167027|ref|YP_003405306.1| - 0.00049 20.0 0.0 0.0021 17.9 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase CMAS PF02353.20 gi|284167027|ref|YP_003405306.1| - 0.0019 17.5 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|284167027|ref|YP_003405306.1| - 0.0027 17.3 0.0 0.0054 16.4 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|284167027|ref|YP_003405306.1| - 0.0028 17.0 0.0 0.0037 16.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|284167027|ref|YP_003405306.1| - 0.0045 16.6 0.0 0.012 15.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|284167027|ref|YP_003405306.1| - 0.0069 17.4 0.0 0.015 16.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284167027|ref|YP_003405306.1| - 0.0081 15.9 0.0 0.012 15.3 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.17 gi|284167027|ref|YP_003405306.1| - 0.031 13.4 0.0 0.056 12.6 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin N6_N4_Mtase PF01555.18 gi|284167027|ref|YP_003405306.1| - 0.031 14.0 0.0 2.7 7.6 0.0 2.3 2 1 0 2 2 2 0 DNA methylase Methyltransf_29 PF03141.16 gi|284167027|ref|YP_003405306.1| - 0.11 11.1 0.0 0.17 10.4 0.0 1.3 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_4 PF02390.17 gi|284167027|ref|YP_003405306.1| - 0.2 11.1 0.0 4.7 6.6 0.0 2.5 3 0 0 3 3 3 0 Putative methyltransferase ATPase PF06745.13 gi|284167028|ref|YP_003405307.1| - 7.7e-05 22.1 0.1 0.0001 21.8 0.1 1.0 1 0 0 1 1 1 1 KaiC SIP PF04954.13 gi|284167028|ref|YP_003405307.1| - 0.043 14.3 0.0 0.079 13.5 0.0 1.4 1 0 0 1 1 1 0 Siderophore-interacting protein Dabb PF07876.12 gi|284167028|ref|YP_003405307.1| - 0.045 14.4 0.2 0.17 12.5 0.0 2.1 1 1 0 1 1 1 0 Stress responsive A/B Barrel Domain DUF1727 PF08353.10 gi|284167028|ref|YP_003405307.1| - 0.15 12.0 0.3 0.96 9.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1727) CBS PF00571.28 gi|284167029|ref|YP_003405308.1| - 3.1e-22 78.8 6.4 1.2e-10 41.7 0.7 2.1 2 0 0 2 2 2 2 CBS domain DUF2072 PF09845.9 gi|284167032|ref|YP_003405311.1| - 3.6e-33 114.7 5.1 5.8e-16 59.0 1.9 2.7 2 1 0 2 2 2 2 Zn-ribbon containing protein DUF1451 PF07295.11 gi|284167032|ref|YP_003405311.1| - 0.12 12.4 1.0 0.28 11.2 1.0 1.6 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|284167032|ref|YP_003405311.1| - 0.15 12.2 3.2 0.37 10.9 3.2 1.7 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|284167032|ref|YP_003405311.1| - 0.22 11.6 0.4 0.36 10.9 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1178 PF06676.11 gi|284167032|ref|YP_003405311.1| - 0.46 10.8 0.1 0.46 10.8 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1178) zinc_ribbon_2 PF13240.6 gi|284167032|ref|YP_003405311.1| - 1.2 9.0 5.1 2.2 8.1 5.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.9 gi|284167033|ref|YP_003405312.1| - 5.7e-46 154.7 1.4 6.7e-46 154.5 1.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|284167034|ref|YP_003405313.1| - 2.7e-15 56.4 0.0 3.8e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|284167034|ref|YP_003405313.1| - 1.5e-11 44.2 0.3 5.7e-05 22.7 0.0 3.2 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|284167034|ref|YP_003405313.1| - 5.5e-08 32.5 0.0 6.9e-05 22.4 0.1 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|284167034|ref|YP_003405313.1| - 1.1e-05 25.1 0.3 0.0001 21.9 0.3 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|284167034|ref|YP_003405313.1| - 1.4e-05 25.1 0.0 0.19 11.6 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|284167034|ref|YP_003405313.1| - 4.2e-05 23.5 0.1 0.0001 22.3 0.0 1.6 1 1 0 1 1 1 1 C-terminal region of MMR_HSR1 domain NB-ARC PF00931.22 gi|284167034|ref|YP_003405313.1| - 0.0002 20.6 0.0 0.00033 19.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain SRPRB PF09439.10 gi|284167034|ref|YP_003405313.1| - 0.00026 20.5 0.0 0.074 12.5 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|284167034|ref|YP_003405313.1| - 0.0011 18.3 0.0 0.0015 17.9 0.0 1.3 1 1 0 1 1 1 1 Septin Roc PF08477.13 gi|284167034|ref|YP_003405313.1| - 0.0015 18.8 0.0 0.013 15.7 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|284167034|ref|YP_003405313.1| - 0.002 17.9 0.0 0.0034 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|284167034|ref|YP_003405313.1| - 0.002 18.7 0.0 0.007 16.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284167034|ref|YP_003405313.1| - 0.0022 18.4 0.1 0.021 15.2 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Ras PF00071.22 gi|284167034|ref|YP_003405313.1| - 0.0023 17.5 0.0 0.18 11.4 0.0 2.5 2 1 0 2 2 2 1 Ras family ATPase_2 PF01637.18 gi|284167034|ref|YP_003405313.1| - 0.0042 17.0 0.0 0.028 14.3 0.0 2.0 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|284167034|ref|YP_003405313.1| - 0.0069 16.6 0.2 0.026 14.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284167034|ref|YP_003405313.1| - 0.0083 16.5 0.0 0.017 15.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|284167034|ref|YP_003405313.1| - 0.014 15.8 0.0 0.022 15.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|284167034|ref|YP_003405313.1| - 0.017 15.6 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Dynamin_N PF00350.23 gi|284167034|ref|YP_003405313.1| - 0.018 15.1 0.0 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Dynamin family cobW PF02492.19 gi|284167034|ref|YP_003405313.1| - 0.019 14.6 0.3 6 6.4 0.2 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|284167034|ref|YP_003405313.1| - 0.031 14.2 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 NTPase RuvB_N PF05496.12 gi|284167034|ref|YP_003405313.1| - 0.037 13.8 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|284167034|ref|YP_003405313.1| - 0.069 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|284167034|ref|YP_003405313.1| - 0.069 12.7 0.1 0.16 11.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|284167034|ref|YP_003405313.1| - 0.074 12.0 0.1 2.5 7.0 0.0 2.7 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|284167034|ref|YP_003405313.1| - 0.091 12.0 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.17 gi|284167034|ref|YP_003405313.1| - 0.1 12.4 0.0 5.4 6.7 0.0 2.8 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.6 gi|284167034|ref|YP_003405313.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|284167034|ref|YP_003405313.1| - 0.18 10.8 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 adh_short PF00106.25 gi|284167036|ref|YP_003405314.1| - 7.6e-64 214.8 0.4 9.6e-64 214.4 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284167036|ref|YP_003405314.1| - 9.1e-61 205.4 0.9 1.1e-60 205.1 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284167036|ref|YP_003405314.1| - 3.2e-15 56.5 0.1 4.4e-15 56.1 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167036|ref|YP_003405314.1| - 5.6e-08 32.5 0.0 9.4e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|284167036|ref|YP_003405314.1| - 0.00065 19.6 0.1 0.00087 19.2 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 gi|284167036|ref|YP_003405314.1| - 0.0014 18.0 0.2 0.0036 16.6 0.0 1.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RmlD_sub_bind PF04321.17 gi|284167036|ref|YP_003405314.1| - 0.0023 17.1 0.1 0.022 13.9 0.1 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain F420_oxidored PF03807.17 gi|284167036|ref|YP_003405314.1| - 0.0031 18.1 0.1 0.008 16.7 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Nuc_rec_co-act PF08815.10 gi|284167036|ref|YP_003405314.1| - 0.0084 15.9 0.2 0.083 12.7 0.1 2.2 2 0 0 2 2 2 1 Nuclear receptor coactivator 2-Hacid_dh_C PF02826.19 gi|284167036|ref|YP_003405314.1| - 0.044 13.1 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|284167036|ref|YP_003405314.1| - 0.077 12.9 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OB_aCoA_assoc PF01796.17 gi|284167037|ref|YP_003405315.1| - 2.2e-11 43.6 0.9 3.1e-11 43.1 0.9 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|284167037|ref|YP_003405315.1| - 4e-06 26.6 0.4 6.6e-06 25.9 0.4 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|284167037|ref|YP_003405315.1| - 0.095 12.6 0.2 0.27 11.2 0.2 1.7 1 0 0 1 1 1 0 Nudix N-terminal Ribosomal_L32p PF01783.23 gi|284167037|ref|YP_003405315.1| - 0.14 12.5 0.1 0.21 11.8 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family Thiolase_N PF00108.23 gi|284167038|ref|YP_003405316.1| - 1.3e-29 103.4 0.0 2.3e-29 102.6 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|284167038|ref|YP_003405316.1| - 2.9e-09 36.9 2.0 1.5e-08 34.5 0.4 2.6 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|284167038|ref|YP_003405316.1| - 4.3e-08 32.8 0.1 9.8e-08 31.7 0.1 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|284167038|ref|YP_003405316.1| - 0.0078 16.2 0.1 0.26 11.3 0.0 2.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain CoatB PF10389.9 gi|284167038|ref|YP_003405316.1| - 1.7 8.6 5.6 2.6 8.0 0.1 2.9 2 0 0 2 2 2 0 Bacteriophage coat protein B HalOD1 PF18545.1 gi|284167039|ref|YP_003405317.1| - 4.5e-21 74.9 0.0 5.5e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Acyl-CoA_dh_1 PF00441.24 gi|284167040|ref|YP_003405318.1| - 7.5e-41 139.8 1.0 1.4e-40 138.9 0.5 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284167040|ref|YP_003405318.1| - 1e-21 77.7 1.0 3e-21 76.2 1.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284167040|ref|YP_003405318.1| - 2.1e-15 56.7 0.0 3.4e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284167040|ref|YP_003405318.1| - 2.1e-13 50.7 0.5 4.4e-13 49.7 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB PF03241.13 gi|284167040|ref|YP_003405318.1| - 0.0078 15.3 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal DUF35_N PF12172.8 gi|284167041|ref|YP_003405319.1| - 1.7e-07 30.9 0.0 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|284167041|ref|YP_003405319.1| - 2e-06 27.7 0.0 3e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated NMD3 PF04981.13 gi|284167041|ref|YP_003405319.1| - 0.00027 20.5 0.3 0.00038 20.0 0.3 1.2 1 0 0 1 1 1 1 NMD3 family CpXC PF14353.6 gi|284167041|ref|YP_003405319.1| - 0.056 13.5 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 CpXC protein Auto_anti-p27 PF06677.12 gi|284167041|ref|YP_003405319.1| - 0.13 12.4 1.3 0.26 11.5 1.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|284167041|ref|YP_003405319.1| - 0.39 10.2 3.2 0.82 9.2 3.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Thiolase_N PF00108.23 gi|284167042|ref|YP_003405320.1| - 5.2e-06 26.0 4.8 1.5e-05 24.5 4.8 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain DisA_N PF02457.16 gi|284167042|ref|YP_003405320.1| - 0.24 11.0 2.0 0.18 11.4 0.3 1.7 2 0 0 2 2 2 0 DisA bacterial checkpoint controller nucleotide-binding Thiolase_N PF00108.23 gi|284167043|ref|YP_003405321.1| - 5.6e-11 42.3 1.7 6.6e-10 38.8 0.1 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain ECH_1 PF00378.20 gi|284167044|ref|YP_003405322.1| - 1.1e-48 165.7 0.0 1.3e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167044|ref|YP_003405322.1| - 5.1e-25 88.7 0.0 5.7e-25 88.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase GHMP_kinases_C PF08544.13 gi|284167044|ref|YP_003405322.1| - 0.093 13.1 0.0 0.35 11.3 0.0 2.0 1 0 0 1 1 1 0 GHMP kinases C terminal Amidohydro_2 PF04909.14 gi|284167045|ref|YP_003405323.1| - 3.8e-29 102.4 8.2 5.9e-29 101.8 8.2 1.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|284167045|ref|YP_003405323.1| - 0.0096 15.3 0.0 0.12 11.7 0.0 2.6 3 0 0 3 3 3 1 TatD related DNase YdjC PF04794.12 gi|284167045|ref|YP_003405323.1| - 0.053 13.5 0.0 0.31 11.0 0.0 2.0 2 0 0 2 2 2 0 YdjC-like protein SnoaL_4 PF13577.6 gi|284167046|ref|YP_003405324.1| - 9.2e-31 106.6 1.6 1.1e-30 106.4 1.6 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 gi|284167046|ref|YP_003405324.1| - 1.7e-05 25.3 1.0 2.8e-05 24.7 1.0 1.5 1 1 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.8 gi|284167046|ref|YP_003405324.1| - 0.00045 19.9 0.5 0.0016 18.1 0.5 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 gi|284167046|ref|YP_003405324.1| - 0.006 16.8 0.1 0.015 15.5 0.1 1.8 1 1 0 1 1 1 1 SnoaL-like domain Ring_hydroxyl_B PF00866.18 gi|284167046|ref|YP_003405324.1| - 0.02 15.0 0.1 0.094 12.8 0.0 1.9 1 1 1 2 2 2 0 Ring hydroxylating beta subunit 3HCDH_N PF02737.18 gi|284167047|ref|YP_003405325.1| - 1.5e-58 197.7 0.7 2e-58 197.2 0.7 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|284167047|ref|YP_003405325.1| - 3e-27 95.1 0.2 7.2e-27 93.8 0.2 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|284167047|ref|YP_003405325.1| - 3e-06 27.5 0.4 6.9e-06 26.3 0.4 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284167047|ref|YP_003405325.1| - 0.0014 18.0 0.1 0.0021 17.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284167047|ref|YP_003405325.1| - 0.002 18.7 1.1 0.0065 17.0 1.1 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|284167047|ref|YP_003405325.1| - 0.0065 16.1 0.7 0.013 15.1 0.4 1.6 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|284167047|ref|YP_003405325.1| - 0.0099 15.9 0.0 0.023 14.7 0.0 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 gi|284167047|ref|YP_003405325.1| - 0.037 14.3 0.2 0.09 13.0 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|284167047|ref|YP_003405325.1| - 0.055 12.8 1.9 0.16 11.3 1.0 2.1 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|284167047|ref|YP_003405325.1| - 0.15 12.3 2.5 0.71 10.1 0.3 2.6 1 1 0 2 2 2 0 TrkA-N domain AMP-binding PF00501.28 gi|284167048|ref|YP_003405326.1| - 5.9e-70 236.0 0.0 7.3e-70 235.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167048|ref|YP_003405326.1| - 2.8e-13 50.6 0.1 5.8e-13 49.6 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Pilus_CpaD PF09476.10 gi|284167048|ref|YP_003405326.1| - 0.042 13.6 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) MaoC_dehydrat_N PF13452.6 gi|284167049|ref|YP_003405327.1| - 2.8e-12 46.9 0.0 3.3e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|284167049|ref|YP_003405327.1| - 0.016 15.5 0.0 0.04 14.3 0.0 1.6 2 0 0 2 2 2 0 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|284167050|ref|YP_003405328.1| - 6.4e-11 41.9 0.0 8.1e-11 41.6 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain AMP-binding PF00501.28 gi|284167051|ref|YP_003405329.1| - 6.5e-77 258.9 0.0 8e-77 258.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167051|ref|YP_003405329.1| - 2.6e-19 70.0 0.1 5.9e-19 68.8 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|284167052|ref|YP_003405330.1| - 2.8e-05 24.3 0.0 6.5e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|284167052|ref|YP_003405330.1| - 0.00061 18.5 0.0 0.001 17.7 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme 3HCDH_N PF02737.18 gi|284167054|ref|YP_003405332.1| - 2e-63 213.5 0.1 3.3e-63 212.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|284167054|ref|YP_003405332.1| - 2e-52 178.0 0.0 3.1e-52 177.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|284167054|ref|YP_003405332.1| - 4.2e-48 161.9 0.2 8e-30 103.3 0.0 3.5 3 0 0 3 3 3 3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|284167054|ref|YP_003405332.1| - 2.6e-27 96.2 0.0 2.8e-24 86.2 0.0 2.4 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|284167054|ref|YP_003405332.1| - 1.3e-05 25.4 0.2 0.00038 20.7 0.1 2.7 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|284167054|ref|YP_003405332.1| - 0.00056 19.9 0.0 0.0018 18.3 0.0 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|284167054|ref|YP_003405332.1| - 0.16 12.6 1.1 0.97 10.1 1.1 2.3 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Lactamase_B PF00753.27 gi|284167055|ref|YP_003405333.1| - 1e-24 87.6 4.2 1.1e-24 87.6 3.5 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284167055|ref|YP_003405333.1| - 2.1e-07 30.7 0.8 7.4e-07 28.9 0.7 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ADSL_C PF10397.9 gi|284167055|ref|YP_003405333.1| - 0.048 14.2 0.2 0.32 11.6 0.1 2.3 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminus Lactamase_B_3 PF13483.6 gi|284167055|ref|YP_003405333.1| - 0.068 13.1 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain 4HBT PF03061.22 gi|284167056|ref|YP_003405334.1| - 3.2e-10 40.2 0.4 4.6e-10 39.7 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|284167056|ref|YP_003405334.1| - 0.0012 19.1 0.0 0.0017 18.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|284167056|ref|YP_003405334.1| - 0.005 17.0 0.0 0.0057 16.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) Acyl-CoA_dh_1 PF00441.24 gi|284167057|ref|YP_003405335.1| - 1.1e-24 87.3 4.8 1.9e-24 86.6 4.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284167057|ref|YP_003405335.1| - 1.9e-23 83.2 0.3 5.1e-23 81.9 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284167057|ref|YP_003405335.1| - 5.4e-19 68.2 0.0 9.6e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284167057|ref|YP_003405335.1| - 2.5e-06 27.8 4.0 4.2e-06 27.1 4.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain adh_short_C2 PF13561.6 gi|284167058|ref|YP_003405336.1| - 2e-70 237.0 1.5 2.3e-70 236.8 1.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167058|ref|YP_003405336.1| - 4.3e-57 192.7 0.6 5.3e-57 192.4 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167058|ref|YP_003405336.1| - 2.6e-11 43.7 0.4 3.6e-11 43.3 0.4 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167058|ref|YP_003405336.1| - 0.00053 19.5 0.2 0.002 17.6 0.2 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Methyltransf_25 PF13649.6 gi|284167058|ref|YP_003405336.1| - 0.017 15.8 0.3 0.032 14.9 0.3 1.4 1 0 0 1 1 1 0 Methyltransferase domain ECH_1 PF00378.20 gi|284167060|ref|YP_003405338.1| - 3e-63 213.4 0.0 3.7e-63 213.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167060|ref|YP_003405338.1| - 8.2e-33 114.3 0.0 2.7e-25 89.6 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase CHASE2 PF05226.11 gi|284167060|ref|YP_003405338.1| - 0.027 14.2 0.1 0.032 13.9 0.1 1.1 1 0 0 1 1 1 0 CHASE2 domain ABC_tran PF00005.27 gi|284167061|ref|YP_003405339.1| - 9.1e-28 97.5 0.0 1.4e-27 96.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284167061|ref|YP_003405339.1| - 8.2e-09 35.7 0.6 0.0017 18.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284167061|ref|YP_003405339.1| - 0.00053 20.3 0.0 0.0014 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284167061|ref|YP_003405339.1| - 0.0017 18.0 0.1 0.0047 16.6 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|284167061|ref|YP_003405339.1| - 0.0022 18.4 0.0 0.0036 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|284167061|ref|YP_003405339.1| - 0.0049 16.3 0.6 0.053 13.0 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|284167061|ref|YP_003405339.1| - 0.0056 17.2 0.0 0.0088 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|284167061|ref|YP_003405339.1| - 0.013 15.7 0.0 0.018 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284167061|ref|YP_003405339.1| - 0.014 15.8 0.0 0.021 15.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.17 gi|284167061|ref|YP_003405339.1| - 0.018 14.7 0.5 0.68 9.6 0.0 2.2 1 1 1 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.15 gi|284167061|ref|YP_003405339.1| - 0.031 14.2 0.0 0.3 11.0 0.0 2.1 1 1 0 1 1 1 0 NTPase AAA_25 PF13481.6 gi|284167061|ref|YP_003405339.1| - 0.1 12.2 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|284167061|ref|YP_003405339.1| - 0.1 12.3 0.2 0.2 11.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|284167061|ref|YP_003405339.1| - 0.11 12.4 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|284167061|ref|YP_003405339.1| - 0.12 13.0 0.0 0.24 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|284167061|ref|YP_003405339.1| - 0.19 11.4 0.0 0.82 9.4 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|284167061|ref|YP_003405339.1| - 0.2 11.4 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|284167062|ref|YP_003405340.1| - 1.7e-23 83.6 0.0 2.5e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|284167062|ref|YP_003405340.1| - 4.2e-10 39.3 0.1 7.6e-10 38.5 0.1 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|284167062|ref|YP_003405340.1| - 1.9e-07 31.2 0.5 0.016 15.1 0.1 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|284167062|ref|YP_003405340.1| - 0.00064 20.3 0.2 0.001 19.6 0.2 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284167062|ref|YP_003405340.1| - 0.0058 16.6 0.0 0.0092 15.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|284167062|ref|YP_003405340.1| - 0.011 15.4 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|284167062|ref|YP_003405340.1| - 0.037 14.3 0.0 0.3 11.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|284167062|ref|YP_003405340.1| - 0.069 13.2 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|284167062|ref|YP_003405340.1| - 0.093 12.2 0.1 1.4 8.3 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284167062|ref|YP_003405340.1| - 0.1 13.0 0.0 0.25 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|284167062|ref|YP_003405340.1| - 0.17 11.6 0.0 0.58 9.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|284167062|ref|YP_003405340.1| - 0.18 11.4 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.16 gi|284167062|ref|YP_003405340.1| - 0.38 10.1 1.6 1.6 8.0 0.2 2.1 1 1 1 2 2 2 0 AIG1 family BPD_transp_2 PF02653.16 gi|284167063|ref|YP_003405341.1| - 3.7e-35 121.4 32.7 6.3e-35 120.6 32.7 1.4 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF443 PF04276.12 gi|284167063|ref|YP_003405341.1| - 0.0058 16.5 2.4 0.034 13.9 0.0 2.7 3 0 0 3 3 3 1 Protein of unknown function (DUF443) BPD_transp_2 PF02653.16 gi|284167064|ref|YP_003405342.1| - 1.6e-38 132.4 41.4 1.9e-38 132.2 41.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2615 PF11027.8 gi|284167064|ref|YP_003405342.1| - 1.3 9.2 2.3 52 4.0 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2615) Peripla_BP_6 PF13458.6 gi|284167065|ref|YP_003405343.1| - 3e-32 112.6 0.2 3.8e-32 112.3 0.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|284167065|ref|YP_003405343.1| - 2.6e-12 46.4 0.0 2e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|284167065|ref|YP_003405343.1| - 8.7e-08 31.6 0.0 3.4e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|284167065|ref|YP_003405343.1| - 0.00047 19.9 3.7 0.0011 18.7 3.7 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SnoaL_4 PF13577.6 gi|284167066|ref|YP_003405344.1| - 5.9e-25 87.8 0.3 7.5e-25 87.5 0.3 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 gi|284167066|ref|YP_003405344.1| - 5.8e-09 36.5 0.4 8.3e-09 36.0 0.4 1.3 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|284167066|ref|YP_003405344.1| - 2.4e-05 24.7 0.0 3e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|284167066|ref|YP_003405344.1| - 0.0029 17.9 0.0 0.0039 17.4 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|284167066|ref|YP_003405344.1| - 0.0062 16.3 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase NTF2 PF02136.20 gi|284167066|ref|YP_003405344.1| - 0.05 14.2 0.0 0.062 13.9 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain adh_short_C2 PF13561.6 gi|284167067|ref|YP_003405345.1| - 1.1e-71 241.2 3.1 1.2e-71 241.0 3.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167067|ref|YP_003405345.1| - 2.3e-56 190.4 5.4 2.7e-56 190.1 5.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167067|ref|YP_003405345.1| - 2.5e-10 40.5 0.9 4e-10 39.9 0.9 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167067|ref|YP_003405345.1| - 6.5e-05 22.5 1.5 7.6e-05 22.3 0.6 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|284167067|ref|YP_003405345.1| - 0.0072 16.2 0.3 0.015 15.2 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CbiA PF01656.23 gi|284167067|ref|YP_003405345.1| - 0.027 14.5 0.0 0.073 13.1 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GDP_Man_Dehyd PF16363.5 gi|284167067|ref|YP_003405345.1| - 0.2 11.0 0.7 0.41 10.0 0.2 1.6 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase AMP-binding PF00501.28 gi|284167068|ref|YP_003405346.1| - 2.9e-67 227.1 0.0 3.8e-67 226.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167068|ref|YP_003405346.1| - 8.2e-15 55.5 0.2 1.7e-14 54.6 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding_C_2 PF14535.6 gi|284167068|ref|YP_003405346.1| - 0.00028 21.1 0.9 0.00059 20.1 0.4 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MaoC_dehydratas PF01575.19 gi|284167069|ref|YP_003405347.1| - 3.3e-21 75.1 0.0 3.8e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284167069|ref|YP_003405347.1| - 0.0003 20.9 0.0 0.001 19.2 0.0 1.7 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase SnoaL_4 PF13577.6 gi|284167070|ref|YP_003405348.1| - 1.3e-26 93.2 1.9 1.4e-26 93.0 1.9 1.0 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|284167070|ref|YP_003405348.1| - 2.3e-08 34.4 0.1 2.9e-08 34.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_2 PF12680.7 gi|284167070|ref|YP_003405348.1| - 3.3e-08 34.1 1.0 4.7e-08 33.6 1.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain adh_short_C2 PF13561.6 gi|284167071|ref|YP_003405349.1| - 4.6e-70 235.8 2.6 5.2e-70 235.6 2.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167071|ref|YP_003405349.1| - 1.4e-55 187.8 1.8 1.7e-55 187.5 1.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167071|ref|YP_003405349.1| - 1.8e-11 44.3 0.6 2.6e-11 43.8 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167071|ref|YP_003405349.1| - 1.5e-05 24.6 0.4 2.4e-05 23.9 0.4 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284167071|ref|YP_003405349.1| - 0.0074 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase TrkA_N PF02254.18 gi|284167071|ref|YP_003405349.1| - 0.05 13.9 0.8 0.08 13.2 0.8 1.4 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|284167071|ref|YP_003405349.1| - 0.067 13.1 0.6 0.12 12.3 0.5 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|284167071|ref|YP_003405349.1| - 0.087 12.2 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3Beta_HSD PF01073.19 gi|284167071|ref|YP_003405349.1| - 0.1 11.6 0.4 0.16 10.9 0.4 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short_C2 PF13561.6 gi|284167072|ref|YP_003405350.1| - 1.1e-65 221.5 0.6 1.2e-65 221.4 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167072|ref|YP_003405350.1| - 9e-59 198.2 0.6 1.1e-58 198.0 0.6 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167072|ref|YP_003405350.1| - 8.7e-11 42.0 0.2 1.4e-10 41.4 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167072|ref|YP_003405350.1| - 7.5e-05 22.3 0.1 8.1e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|284167072|ref|YP_003405350.1| - 0.0082 16.0 0.6 0.01 15.7 0.6 1.3 1 0 0 1 1 1 1 NAD(P)H-binding FAD_binding_2 PF00890.24 gi|284167073|ref|YP_003405351.1| - 1.8e-73 248.1 1.1 2.1e-73 247.8 1.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|284167073|ref|YP_003405351.1| - 1.2e-09 38.3 9.9 1.2e-09 38.3 9.9 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284167073|ref|YP_003405351.1| - 3.4e-07 29.3 3.3 0.00022 20.0 2.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|284167073|ref|YP_003405351.1| - 2.4e-05 23.7 0.3 4.6e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|284167073|ref|YP_003405351.1| - 0.00054 19.3 0.6 0.04 13.2 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284167073|ref|YP_003405351.1| - 0.00081 18.8 0.4 0.00081 18.8 0.4 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284167073|ref|YP_003405351.1| - 0.021 15.1 4.5 0.021 15.1 4.5 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|284167073|ref|YP_003405351.1| - 0.23 10.7 1.0 0.35 10.1 1.0 1.2 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.22 gi|284167073|ref|YP_003405351.1| - 0.48 9.5 3.8 7.1 5.6 2.6 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|284167073|ref|YP_003405351.1| - 0.48 9.6 3.0 0.76 9.0 1.8 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284167075|ref|YP_003405353.1| - 5.7e-58 197.0 0.0 1.3e-57 195.8 0.0 1.5 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|284167075|ref|YP_003405353.1| - 8e-16 58.6 3.5 1.4e-15 57.8 3.5 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|284167075|ref|YP_003405353.1| - 1.5e-09 37.8 3.2 7.9e-09 35.4 1.8 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284167075|ref|YP_003405353.1| - 4.9e-08 32.5 2.7 8.9e-05 21.8 0.3 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284167075|ref|YP_003405353.1| - 5.8e-07 29.0 0.8 9.4e-07 28.3 0.8 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|284167075|ref|YP_003405353.1| - 1e-06 28.9 1.1 2.3e-06 27.7 1.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284167075|ref|YP_003405353.1| - 1.7e-06 27.0 0.4 0.00049 18.9 0.7 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|284167075|ref|YP_003405353.1| - 3.9e-05 23.1 0.1 0.0034 16.7 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284167075|ref|YP_003405353.1| - 9.7e-05 22.9 0.2 0.33 11.6 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284167075|ref|YP_003405353.1| - 0.0051 15.9 1.4 0.037 13.1 1.1 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A DUF3645 PF12359.8 gi|284167075|ref|YP_003405353.1| - 0.007 15.7 0.2 0.018 14.4 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3645) FAD_binding_3 PF01494.19 gi|284167075|ref|YP_003405353.1| - 0.027 13.7 0.2 0.042 13.1 0.1 1.4 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 gi|284167075|ref|YP_003405353.1| - 0.09 11.8 0.5 0.13 11.3 0.5 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|284167075|ref|YP_003405353.1| - 0.13 11.6 3.1 0.23 10.7 3.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|284167075|ref|YP_003405353.1| - 0.42 9.8 4.8 25 4.0 1.8 3.1 2 1 0 3 3 3 0 Flavin containing amine oxidoreductase Inositol_P PF00459.25 gi|284167076|ref|YP_003405354.1| - 2.1e-58 198.0 0.0 3.5e-58 197.3 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family NAD_kinase PF01513.21 gi|284167076|ref|YP_003405354.1| - 1.3e-33 116.4 0.9 2.3e-33 115.7 0.9 1.4 1 0 0 1 1 1 1 ATP-NAD kinase FBPase PF00316.20 gi|284167076|ref|YP_003405354.1| - 0.013 14.9 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain DAGK_cat PF00781.24 gi|284167076|ref|YP_003405354.1| - 0.091 12.4 0.7 0.21 11.2 0.1 1.9 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Aldedh PF00171.22 gi|284167077|ref|YP_003405355.1| - 3.1e-160 533.7 0.0 3.5e-160 533.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|284167077|ref|YP_003405355.1| - 0.02 14.0 0.0 0.03 13.4 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF1487 PF07368.11 gi|284167077|ref|YP_003405355.1| - 0.2 11.1 0.0 6.7 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) HTH_20 PF12840.7 gi|284167078|ref|YP_003405356.1| - 0.0043 17.1 1.3 0.011 15.8 1.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain CCG PF02754.16 gi|284167079|ref|YP_003405357.1| - 6.1e-16 58.4 0.0 2.8e-11 43.5 0.1 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|284167079|ref|YP_003405357.1| - 1.8e-10 40.8 7.6 6.2e-09 35.8 8.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284167079|ref|YP_003405357.1| - 8.1e-10 38.1 12.4 1.9e-05 24.3 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284167079|ref|YP_003405357.1| - 2.6e-09 37.4 4.6 2.6e-09 37.4 4.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284167079|ref|YP_003405357.1| - 5.6e-09 36.0 7.2 8.4e-09 35.5 5.4 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284167079|ref|YP_003405357.1| - 1.1e-07 31.5 11.5 0.00019 21.3 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|284167079|ref|YP_003405357.1| - 1.2e-07 32.2 20.4 3e-07 30.9 9.3 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284167079|ref|YP_003405357.1| - 4.4e-05 23.5 10.8 0.011 15.9 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284167079|ref|YP_003405357.1| - 0.00011 22.3 0.4 0.36 11.0 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284167079|ref|YP_003405357.1| - 0.00011 22.6 9.1 0.00011 22.6 9.1 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284167079|ref|YP_003405357.1| - 0.00013 22.9 11.4 0.0021 19.0 12.2 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|284167079|ref|YP_003405357.1| - 0.00026 21.0 23.2 0.00039 20.4 4.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|284167079|ref|YP_003405357.1| - 0.0012 19.2 18.5 0.0049 17.3 1.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|284167079|ref|YP_003405357.1| - 0.0017 19.2 5.7 0.05 14.5 0.2 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|284167079|ref|YP_003405357.1| - 2.8 9.1 25.5 0.69 11.0 5.3 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|284167079|ref|YP_003405357.1| - 5.1 7.7 20.0 1.8 9.2 3.3 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|284167079|ref|YP_003405357.1| - 9 7.1 15.4 0.55 11.0 0.5 3.5 3 1 0 3 3 3 0 4Fe-4S single cluster domain ETF_alpha PF00766.19 gi|284167080|ref|YP_003405358.1| - 1.1e-36 124.7 0.1 2.3e-36 123.7 0.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|284167080|ref|YP_003405358.1| - 6.3e-31 107.7 1.6 9.3e-31 107.1 1.6 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain PBP_like PF12727.7 gi|284167080|ref|YP_003405358.1| - 0.029 13.5 0.1 0.35 10.0 0.0 2.1 2 0 0 2 2 2 0 PBP superfamily domain ETF PF01012.21 gi|284167081|ref|YP_003405359.1| - 1.1e-38 132.9 1.0 1.5e-38 132.5 1.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain YccV-like PF08755.11 gi|284167081|ref|YP_003405359.1| - 0.18 12.4 0.0 0.32 11.5 0.0 1.4 1 0 0 1 1 1 0 Hemimethylated DNA-binding protein YccV like AMP-binding PF00501.28 gi|284167082|ref|YP_003405360.1| - 5.1e-75 252.7 0.0 6.1e-75 252.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167082|ref|YP_003405360.1| - 3.7e-13 50.2 0.3 7.4e-13 49.3 0.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain S_100 PF01023.19 gi|284167082|ref|YP_003405360.1| - 0.017 14.8 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain DHBP_synthase PF00926.19 gi|284167083|ref|YP_003405361.1| - 1.2e-55 188.0 0.1 1.4e-55 187.8 0.1 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|284167084|ref|YP_003405362.1| - 8.3e-42 142.1 0.0 1.2e-41 141.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 Abhydrolase_3 PF07859.13 gi|284167085|ref|YP_003405363.1| - 3.7e-77 258.9 0.1 4.4e-77 258.7 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|284167085|ref|YP_003405363.1| - 6.8e-07 28.5 0.2 1.7e-06 27.3 0.2 1.5 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|284167085|ref|YP_003405363.1| - 0.0024 17.4 0.2 0.0049 16.4 0.2 1.5 1 1 0 1 1 1 1 Prolyl oligopeptidase family Chlorophyllase2 PF12740.7 gi|284167085|ref|YP_003405363.1| - 0.0063 15.5 0.0 0.014 14.3 0.0 1.6 1 1 0 1 1 1 1 Chlorophyllase enzyme Say1_Mug180 PF10340.9 gi|284167085|ref|YP_003405363.1| - 0.01 14.7 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 0 Steryl acetyl hydrolase AXE1 PF05448.12 gi|284167085|ref|YP_003405363.1| - 0.064 11.9 0.4 0.91 8.1 0.2 2.2 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|284167085|ref|YP_003405363.1| - 0.083 13.5 3.8 0.41 11.2 3.8 1.9 1 1 0 1 1 1 0 Alpha/beta hydrolase family DUF2974 PF11187.8 gi|284167085|ref|YP_003405363.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Chlorophyllase PF07224.11 gi|284167085|ref|YP_003405363.1| - 0.13 11.2 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase MM_CoA_mutase PF01642.22 gi|284167086|ref|YP_003405364.1| - 7.7e-212 704.4 0.1 8.7e-212 704.2 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|284167086|ref|YP_003405364.1| - 0.0036 15.8 0.1 0.0067 15.0 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) AFOR_C PF01314.18 gi|284167088|ref|YP_003405366.1| - 1.8e-73 247.8 0.0 2.8e-73 247.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284167088|ref|YP_003405366.1| - 1.8e-60 204.3 0.0 3.9e-60 203.1 0.0 1.6 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|284167089|ref|YP_003405367.1| - 1.9e-11 44.4 0.0 2.2e-11 44.2 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|284167089|ref|YP_003405367.1| - 0.0089 16.4 0.0 0.01 16.2 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ABM PF03992.16 gi|284167090|ref|YP_003405368.1| - 1.3e-17 63.7 0.3 1.5e-17 63.4 0.3 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase B12-binding PF02310.19 gi|284167091|ref|YP_003405369.1| - 2.6e-23 82.3 0.9 3e-23 82.2 0.9 1.0 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.11 gi|284167091|ref|YP_003405369.1| - 0.071 12.9 0.2 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Staphylococcus haemolytic protein MFS_1 PF07690.16 gi|284167092|ref|YP_003405370.1| - 4.8e-42 144.1 68.3 8.6e-38 130.1 42.5 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284167092|ref|YP_003405370.1| - 4.8e-09 35.6 11.6 8.8e-07 28.1 4.4 2.1 2 0 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|284167092|ref|YP_003405370.1| - 4.1e-05 22.6 1.5 4.1e-05 22.6 1.5 2.3 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_2 PF13347.6 gi|284167092|ref|YP_003405370.1| - 0.00014 20.6 17.2 0.014 14.0 2.6 2.5 2 1 0 2 2 2 2 MFS/sugar transport protein SHR3_chaperone PF08229.11 gi|284167092|ref|YP_003405370.1| - 0.032 13.2 0.6 0.074 12.0 0.6 1.6 1 0 0 1 1 1 0 ER membrane protein SH3 FMO-like PF00743.19 gi|284167093|ref|YP_003405371.1| - 4.6e-16 58.3 0.0 8e-15 54.2 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Pyr_redox_3 PF13738.6 gi|284167093|ref|YP_003405371.1| - 8.6e-13 48.2 0.0 4.1e-12 46.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284167093|ref|YP_003405371.1| - 6.6e-12 45.5 0.0 9.2e-10 38.6 0.0 2.9 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284167093|ref|YP_003405371.1| - 2.6e-08 33.5 0.0 8.2e-07 28.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|284167093|ref|YP_003405371.1| - 5.3e-08 32.4 0.0 1.7e-06 27.4 0.0 2.7 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|284167093|ref|YP_003405371.1| - 1e-06 28.6 0.1 0.016 14.8 0.0 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|284167093|ref|YP_003405371.1| - 1.5e-06 28.3 0.0 0.0015 18.6 0.0 3.4 2 1 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|284167093|ref|YP_003405371.1| - 0.00039 19.6 0.0 0.0015 17.6 0.0 1.9 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|284167093|ref|YP_003405371.1| - 0.0013 19.2 0.0 0.037 14.6 0.1 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|284167093|ref|YP_003405371.1| - 0.0028 17.1 0.0 0.0053 16.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|284167093|ref|YP_003405371.1| - 0.013 14.7 0.4 0.046 13.0 0.1 2.0 3 0 0 3 3 3 0 Thi4 family FAD_binding_2 PF00890.24 gi|284167093|ref|YP_003405371.1| - 0.035 13.2 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain Semialdhyde_dh PF01118.24 gi|284167093|ref|YP_003405371.1| - 0.036 14.5 0.0 4 7.9 0.0 2.6 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|284167093|ref|YP_003405371.1| - 0.037 12.7 0.0 0.5 9.0 0.1 2.1 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|284167093|ref|YP_003405371.1| - 0.063 12.5 0.4 6 6.0 0.2 2.5 2 1 0 2 2 2 0 FAD binding domain Shikimate_DH PF01488.20 gi|284167093|ref|YP_003405371.1| - 0.089 12.8 0.0 0.36 10.9 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|284167093|ref|YP_003405371.1| - 0.11 13.0 0.0 0.7 10.4 0.1 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding SnoaL_4 PF13577.6 gi|284167094|ref|YP_003405372.1| - 2.1e-26 92.6 1.9 2.4e-26 92.4 1.9 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_2 PF12680.7 gi|284167094|ref|YP_003405372.1| - 5.3e-09 36.6 0.4 8.2e-09 36.0 0.4 1.4 1 1 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|284167094|ref|YP_003405372.1| - 0.00017 21.9 0.4 0.00024 21.5 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) CaMKII_AD PF08332.10 gi|284167094|ref|YP_003405372.1| - 0.0036 17.4 0.0 0.005 17.0 0.0 1.2 1 0 0 1 1 1 1 Calcium/calmodulin dependent protein kinase II association domain Scytalone_dh PF02982.14 gi|284167094|ref|YP_003405372.1| - 0.04 13.7 0.1 0.88 9.4 0.0 2.1 2 0 0 2 2 2 0 Scytalone dehydratase ADH_N PF08240.12 gi|284167095|ref|YP_003405373.1| - 2.4e-27 95.0 7.9 5.6e-27 93.8 7.9 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284167095|ref|YP_003405373.1| - 6.2e-16 58.6 0.0 1.2e-15 57.6 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TOBE_2 PF08402.10 gi|284167095|ref|YP_003405373.1| - 0.018 15.2 0.8 3.4 7.9 0.0 3.5 4 0 0 4 4 4 0 TOBE domain IGFBP PF00219.18 gi|284167095|ref|YP_003405373.1| - 0.035 14.7 0.7 0.035 14.7 0.7 1.8 2 0 0 2 2 2 0 Insulin-like growth factor binding protein Glu_dehyd_C PF16912.5 gi|284167095|ref|YP_003405373.1| - 0.052 13.0 0.0 6.6 6.1 0.0 2.6 2 0 0 2 2 2 0 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|284167095|ref|YP_003405373.1| - 0.13 13.4 0.0 0.25 12.4 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase AXE1 PF05448.12 gi|284167096|ref|YP_003405374.1| - 1.6e-11 43.5 0.0 1e-05 24.4 0.0 2.8 2 1 1 3 3 3 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|284167096|ref|YP_003405374.1| - 3.8e-11 44.0 0.0 4.9e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|284167096|ref|YP_003405374.1| - 4.6e-11 42.8 0.2 6.4e-11 42.3 0.2 1.5 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|284167096|ref|YP_003405374.1| - 1.5e-10 40.7 0.0 3.9e-10 39.4 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|284167096|ref|YP_003405374.1| - 5.6e-07 29.2 0.1 5.2e-05 22.8 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|284167096|ref|YP_003405374.1| - 1.1e-06 28.5 0.0 7.9e-06 25.7 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|284167096|ref|YP_003405374.1| - 0.00079 19.4 0.0 0.0037 17.2 0.0 1.9 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|284167096|ref|YP_003405374.1| - 0.0025 17.4 0.1 0.056 13.0 0.0 2.6 2 1 0 2 2 2 1 Dienelactone hydrolase family DUF2048 PF09752.9 gi|284167096|ref|YP_003405374.1| - 0.011 14.9 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 DUF1100 PF06500.11 gi|284167096|ref|YP_003405374.1| - 0.1 11.4 0.0 0.22 10.3 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1100) RF3_C PF16658.5 gi|284167097|ref|YP_003405375.1| - 0.02 14.7 0.1 0.042 13.7 0.1 1.4 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain AcylCoA_dehyd_C PF12186.8 gi|284167098|ref|YP_003405376.1| - 0.081 13.0 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase C terminal Pyr_redox_2 PF07992.14 gi|284167099|ref|YP_003405377.1| - 2.4e-31 109.1 0.6 2.8e-31 108.9 0.6 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284167099|ref|YP_003405377.1| - 1.7e-11 44.0 0.0 2.9e-06 26.8 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284167099|ref|YP_003405377.1| - 3.3e-07 29.7 0.7 9.6e-06 24.9 0.1 2.8 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284167099|ref|YP_003405377.1| - 2e-06 27.9 0.8 0.00022 21.4 0.2 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284167099|ref|YP_003405377.1| - 2.1e-05 24.1 0.3 2.1e-05 24.1 0.3 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|284167099|ref|YP_003405377.1| - 2.7e-05 23.9 1.8 0.00044 19.9 0.4 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284167099|ref|YP_003405377.1| - 3.2e-05 22.8 0.1 0.0035 16.1 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|284167099|ref|YP_003405377.1| - 0.00024 21.6 5.5 0.003 18.1 0.0 3.2 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284167099|ref|YP_003405377.1| - 0.00041 19.7 2.2 0.0053 16.0 0.5 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|284167099|ref|YP_003405377.1| - 0.00055 19.1 0.9 0.0097 15.0 0.4 2.4 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|284167099|ref|YP_003405377.1| - 0.014 14.6 0.4 0.022 14.0 0.4 1.3 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 gi|284167099|ref|YP_003405377.1| - 0.066 12.3 0.2 1.2 8.1 0.1 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein adh_short_C2 PF13561.6 gi|284167100|ref|YP_003405378.1| - 1.7e-57 194.7 0.2 1.1e-56 192.1 0.2 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167100|ref|YP_003405378.1| - 3.4e-53 180.0 0.2 1.6e-52 177.9 0.2 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167100|ref|YP_003405378.1| - 1.7e-13 50.9 0.1 2.5e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 KR domain Mannitol_dh PF01232.23 gi|284167100|ref|YP_003405378.1| - 0.044 14.0 0.0 0.07 13.3 0.0 1.3 1 0 0 1 1 1 0 Mannitol dehydrogenase Rossmann domain Ub-RnfH PF03658.14 gi|284167100|ref|YP_003405378.1| - 0.059 13.8 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 RnfH family Ubiquitin MoCF_biosynth PF00994.24 gi|284167101|ref|YP_003405379.1| - 7.1e-31 106.8 0.5 1.7e-30 105.6 0.2 1.7 2 0 0 2 2 2 1 Probable molybdopterin binding domain PB1 PF00564.24 gi|284167101|ref|YP_003405379.1| - 0.057 13.4 1.4 0.15 12.0 0.1 2.0 2 0 0 2 2 2 0 PB1 domain Thioesterase PF00975.20 gi|284167101|ref|YP_003405379.1| - 0.11 12.6 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Thioesterase domain Oxidored_FMN PF00724.20 gi|284167102|ref|YP_003405380.1| - 3.6e-35 121.8 0.0 5.5e-35 121.2 0.0 1.3 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 gi|284167102|ref|YP_003405380.1| - 1.8e-07 30.7 1.2 9.3e-07 28.4 0.4 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284167102|ref|YP_003405380.1| - 1.9e-07 30.2 0.2 6.3e-07 28.4 0.1 1.9 1 1 1 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|284167102|ref|YP_003405380.1| - 3.1e-07 30.5 0.2 1.3e-06 28.5 0.2 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284167102|ref|YP_003405380.1| - 1.2e-06 28.1 0.9 2.1e-06 27.3 0.9 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284167102|ref|YP_003405380.1| - 1.6e-06 27.4 1.5 1.6e-06 27.4 1.5 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|284167102|ref|YP_003405380.1| - 0.00012 22.6 0.7 0.00046 20.7 0.3 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284167102|ref|YP_003405380.1| - 0.00013 21.3 0.1 0.00023 20.5 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|284167102|ref|YP_003405380.1| - 0.0051 15.9 2.6 0.007 15.5 0.7 2.1 2 1 1 3 3 3 1 Glucose inhibited division protein A DAO PF01266.24 gi|284167102|ref|YP_003405380.1| - 0.0082 15.8 6.5 0.03 13.9 6.5 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284167102|ref|YP_003405380.1| - 0.015 14.5 0.1 0.031 13.5 0.1 1.5 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|284167102|ref|YP_003405380.1| - 0.06 13.2 0.1 0.098 12.5 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|284167102|ref|YP_003405380.1| - 0.073 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|284167102|ref|YP_003405380.1| - 0.17 12.3 0.2 0.58 10.6 0.2 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding adh_short PF00106.25 gi|284167103|ref|YP_003405381.1| - 6.8e-49 166.0 0.0 1.1e-48 165.3 0.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284167103|ref|YP_003405381.1| - 1.8e-40 139.0 0.2 3e-40 138.2 0.2 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284167103|ref|YP_003405381.1| - 1.1e-12 48.2 0.1 2.2e-12 47.2 0.1 1.5 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|284167103|ref|YP_003405381.1| - 1.7e-07 30.9 0.0 4.2e-07 29.6 0.0 1.6 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.21 gi|284167103|ref|YP_003405381.1| - 2.6e-06 27.1 0.1 7.1e-06 25.7 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|284167103|ref|YP_003405381.1| - 0.00019 20.6 0.5 0.00047 19.4 0.0 1.9 2 1 0 2 2 2 1 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 gi|284167103|ref|YP_003405381.1| - 0.035 13.5 0.0 0.46 9.8 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|284167104|ref|YP_003405382.1| - 1.6e-52 178.4 7.8 7.1e-52 176.3 7.8 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167104|ref|YP_003405382.1| - 3.3e-46 157.2 1.8 2.4e-45 154.4 1.8 1.9 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167104|ref|YP_003405382.1| - 5e-13 49.4 2.3 5e-13 49.4 2.3 1.5 2 0 0 2 2 2 1 KR domain ABM PF03992.16 gi|284167106|ref|YP_003405384.1| - 1.2e-16 60.6 1.0 1.7e-16 60.0 0.8 1.4 1 1 0 1 1 1 1 Antibiotic biosynthesis monooxygenase PRKCSH-like PF12999.7 gi|284167106|ref|YP_003405384.1| - 0.15 11.9 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Glucosidase II beta subunit-like adh_short_C2 PF13561.6 gi|284167107|ref|YP_003405385.1| - 7.5e-52 176.2 2.5 5.1e-51 173.5 2.5 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167107|ref|YP_003405385.1| - 7.4e-50 169.1 0.5 3.5e-49 166.9 0.5 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167107|ref|YP_003405385.1| - 1.7e-12 47.6 0.4 2.9e-12 46.8 0.4 1.4 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|284167108|ref|YP_003405386.1| - 2.3e-56 191.0 0.4 1.3e-55 188.5 0.4 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167108|ref|YP_003405386.1| - 7.6e-53 178.9 0.1 3.7e-52 176.6 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167108|ref|YP_003405386.1| - 1.3e-11 44.7 0.1 2.2e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167108|ref|YP_003405386.1| - 0.016 14.7 0.1 0.024 14.1 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.6 gi|284167109|ref|YP_003405387.1| - 6.3e-56 189.5 0.8 4.5e-55 186.8 0.8 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167109|ref|YP_003405387.1| - 4.7e-50 169.8 0.5 2.3e-49 167.5 0.5 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167109|ref|YP_003405387.1| - 5.7e-12 45.9 0.1 8.2e-12 45.4 0.1 1.2 1 0 0 1 1 1 1 KR domain Asp2 PF16929.5 gi|284167109|ref|YP_003405387.1| - 0.4 9.6 3.7 2.2 7.1 0.1 2.1 2 0 0 2 2 2 0 Accessory Sec system GspB-transporter AAA_lid_2 PF17863.1 gi|284167110|ref|YP_003405388.1| - 1.9e-17 62.8 3.3 2.8e-17 62.3 2.0 2.0 1 1 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|284167110|ref|YP_003405388.1| - 3.5e-11 42.9 0.2 9.7e-07 28.4 0.0 2.5 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|284167110|ref|YP_003405388.1| - 2e-10 40.8 0.1 4.2e-06 26.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|284167110|ref|YP_003405388.1| - 0.00025 20.9 0.0 0.027 14.4 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|284167110|ref|YP_003405388.1| - 0.0013 17.9 0.0 0.059 12.5 0.0 2.7 2 2 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|284167110|ref|YP_003405388.1| - 0.0068 16.1 0.0 0.61 9.8 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|284167110|ref|YP_003405388.1| - 0.013 15.8 3.8 0.018 15.4 0.6 2.6 2 1 0 2 2 2 0 AAA ATPase domain DUF815 PF05673.13 gi|284167110|ref|YP_003405388.1| - 0.014 14.6 0.0 0.041 13.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|284167110|ref|YP_003405388.1| - 0.097 12.4 1.3 0.59 9.8 0.5 2.4 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|284167110|ref|YP_003405388.1| - 0.13 12.7 0.0 0.96 9.9 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DPCD PF14913.6 gi|284167110|ref|YP_003405388.1| - 0.18 11.1 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 DPCD protein family AAA_lid_2 PF17863.1 gi|284167111|ref|YP_003405389.1| - 2.4e-12 46.5 4.9 4.1e-12 45.8 1.5 2.8 2 0 0 2 2 2 1 AAA lid domain VWA_2 PF13519.6 gi|284167111|ref|YP_003405389.1| - 2.7e-12 47.3 0.0 6.5e-12 46.0 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|284167111|ref|YP_003405389.1| - 2.2e-10 40.6 0.1 5.8e-06 26.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|284167111|ref|YP_003405389.1| - 3e-10 40.6 0.0 4.8e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|284167111|ref|YP_003405389.1| - 3.4e-10 39.7 1.1 1.7e-06 27.6 0.0 3.0 2 1 1 3 3 3 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|284167111|ref|YP_003405389.1| - 0.00021 20.5 0.3 0.013 14.6 0.3 2.8 2 1 0 2 2 2 1 MCM P-loop domain AAA_3 PF07726.11 gi|284167111|ref|YP_003405389.1| - 0.0005 19.9 0.0 0.021 14.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284167111|ref|YP_003405389.1| - 0.0012 19.3 0.2 0.0012 19.3 0.2 2.5 3 1 0 3 3 3 1 AAA ATPase domain VWA_3 PF13768.6 gi|284167111|ref|YP_003405389.1| - 0.0015 18.5 0.0 0.0035 17.3 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4598 PF15370.6 gi|284167111|ref|YP_003405389.1| - 0.0024 18.3 0.1 0.0059 17.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4598) AAA_22 PF13401.6 gi|284167111|ref|YP_003405389.1| - 0.0052 17.1 0.0 0.03 14.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|284167111|ref|YP_003405389.1| - 0.0077 15.9 0.0 0.88 9.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase_C PF13335.6 gi|284167111|ref|YP_003405389.1| - 0.049 14.3 6.0 0.32 11.6 6.0 2.5 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA PF00004.29 gi|284167111|ref|YP_003405389.1| - 0.056 13.9 0.0 0.64 10.5 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MCM_lid PF17855.1 gi|284167111|ref|YP_003405389.1| - 0.8 10.2 3.5 0.82 10.1 1.4 2.0 2 0 0 2 2 1 0 MCM AAA-lid domain Nucleo_P87 PF07267.11 gi|284167111|ref|YP_003405389.1| - 1 8.1 2.5 1.7 7.4 2.5 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 Oxidored_FMN PF00724.20 gi|284167112|ref|YP_003405390.1| - 2.5e-54 184.8 0.0 3.3e-54 184.4 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox_2 PF07992.14 gi|284167112|ref|YP_003405390.1| - 3.9e-12 46.0 0.1 6.8e-11 41.9 0.1 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284167112|ref|YP_003405390.1| - 1.4e-08 34.8 0.1 6.6e-07 29.5 0.1 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284167112|ref|YP_003405390.1| - 2.6e-07 30.4 0.2 7.4e-07 28.9 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284167112|ref|YP_003405390.1| - 9.5e-07 28.2 0.4 1.8e-06 27.3 0.3 1.5 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|284167112|ref|YP_003405390.1| - 1e-06 29.2 0.5 7.3e-05 23.3 0.4 3.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284167112|ref|YP_003405390.1| - 2.1e-05 23.4 0.3 0.00011 21.1 0.1 2.2 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|284167112|ref|YP_003405390.1| - 0.00017 21.3 4.2 0.00042 20.0 0.4 2.7 2 1 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|284167112|ref|YP_003405390.1| - 0.00047 19.5 0.1 0.0069 15.7 0.0 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284167112|ref|YP_003405390.1| - 0.0012 18.0 0.1 0.0036 16.5 0.1 1.7 1 1 1 2 2 2 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|284167112|ref|YP_003405390.1| - 0.017 14.5 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|284167112|ref|YP_003405390.1| - 0.021 15.2 0.0 0.064 13.7 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|284167112|ref|YP_003405390.1| - 0.044 13.0 0.1 0.083 12.1 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Glyco_trans_4_4 PF13579.6 gi|284167112|ref|YP_003405390.1| - 0.74 10.2 5.1 0.24 11.8 0.6 2.5 2 2 0 2 2 2 0 Glycosyl transferase 4-like domain ETF_alpha PF00766.19 gi|284167113|ref|YP_003405391.1| - 8.8e-26 89.8 0.0 2.2e-25 88.5 0.0 1.6 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|284167113|ref|YP_003405391.1| - 7.9e-09 35.7 0.0 1.8e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein domain FAD_binding_3 PF01494.19 gi|284167114|ref|YP_003405392.1| - 3.3e-15 56.2 0.7 3.3e-15 56.2 0.7 1.8 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|284167114|ref|YP_003405392.1| - 7.3e-15 55.4 2.3 9.4e-08 32.0 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284167114|ref|YP_003405392.1| - 1.2e-08 34.5 4.7 1.9e-07 30.6 0.3 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284167114|ref|YP_003405392.1| - 2.2e-07 30.4 0.1 4.4e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|284167114|ref|YP_003405392.1| - 2.9e-07 30.2 1.1 4.6e-07 29.5 1.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|284167114|ref|YP_003405392.1| - 1.1e-06 28.1 1.7 1.1e-06 28.1 1.7 2.2 3 0 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|284167114|ref|YP_003405392.1| - 1.5e-06 27.2 2.7 4.3e-05 22.4 0.9 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|284167114|ref|YP_003405392.1| - 3.1e-06 27.3 0.1 3.1e-06 27.3 0.1 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|284167114|ref|YP_003405392.1| - 5.6e-06 26.8 2.1 0.0047 17.5 0.5 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284167114|ref|YP_003405392.1| - 8.9e-06 25.0 3.2 1.5e-05 24.3 0.9 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|284167114|ref|YP_003405392.1| - 5.4e-05 22.4 2.3 0.00043 19.5 2.3 2.1 1 1 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|284167114|ref|YP_003405392.1| - 0.00029 20.8 0.3 0.26 11.2 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|284167114|ref|YP_003405392.1| - 0.0013 17.6 1.3 0.092 11.6 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|284167114|ref|YP_003405392.1| - 0.0069 15.7 2.2 0.2 10.9 0.2 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|284167114|ref|YP_003405392.1| - 0.0073 16.0 0.8 0.022 14.4 0.3 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|284167114|ref|YP_003405392.1| - 0.055 13.3 0.5 0.088 12.7 0.5 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|284167114|ref|YP_003405392.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer4_21 PF14697.6 gi|284167115|ref|YP_003405393.1| - 8.2e-08 32.3 7.6 0.0016 18.5 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284167115|ref|YP_003405393.1| - 1.7e-05 24.9 9.9 2.4e-05 24.4 9.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284167115|ref|YP_003405393.1| - 5.9e-05 22.9 12.3 0.019 15.0 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|284167115|ref|YP_003405393.1| - 6.3e-05 23.5 12.4 0.025 15.1 14.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284167115|ref|YP_003405393.1| - 0.00013 22.1 22.7 0.0014 18.7 13.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|284167115|ref|YP_003405393.1| - 0.0012 19.0 5.7 0.0023 18.0 5.7 1.6 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_6 PF12837.7 gi|284167115|ref|YP_003405393.1| - 0.005 16.9 15.0 0.021 14.9 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284167115|ref|YP_003405393.1| - 0.026 14.9 7.8 0.027 14.9 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284167115|ref|YP_003405393.1| - 0.047 14.2 2.8 0.047 14.2 2.8 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|284167115|ref|YP_003405393.1| - 0.048 13.5 3.6 0.048 13.5 3.6 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|284167115|ref|YP_003405393.1| - 0.2 12.6 11.2 2.7 9.0 1.4 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain YokU PF14122.6 gi|284167115|ref|YP_003405393.1| - 0.95 9.5 5.7 8.1 6.5 3.2 2.4 1 1 2 3 3 3 0 YokU-like protein, putative antitoxin Fer4_13 PF13370.6 gi|284167115|ref|YP_003405393.1| - 4.7 7.8 17.9 1.9 9.1 6.0 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ETF PF01012.21 gi|284167116|ref|YP_003405394.1| - 9e-22 77.8 4.5 1.3e-21 77.4 4.5 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Glycos_transf_2 PF00535.26 gi|284167117|ref|YP_003405395.1| - 3.5e-27 95.3 0.0 6.1e-27 94.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284167117|ref|YP_003405395.1| - 2.7e-23 83.1 1.2 6.7e-23 81.8 1.2 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_21 PF05050.12 gi|284167117|ref|YP_003405395.1| - 5.6e-22 78.6 0.0 1e-21 77.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase FkbM domain Glyco_trans_2_3 PF13632.6 gi|284167117|ref|YP_003405395.1| - 4.6e-10 39.7 0.0 9.6e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|284167117|ref|YP_003405395.1| - 5.7e-08 32.6 0.0 8.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 V_cholerae_RfbT PF05575.11 gi|284167117|ref|YP_003405395.1| - 1.2e-06 28.1 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|284167117|ref|YP_003405395.1| - 8.3e-06 25.7 0.0 1.6e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Glyco_transf_21 PF13506.6 gi|284167117|ref|YP_003405395.1| - 6.9e-05 22.4 0.0 0.00028 20.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 21 PCMT PF01135.19 gi|284167117|ref|YP_003405395.1| - 0.043 13.6 0.0 0.097 12.4 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Radical_SAM PF04055.21 gi|284167118|ref|YP_003405396.1| - 2.2e-22 80.2 0.0 3.3e-22 79.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|284167118|ref|YP_003405396.1| - 8.2e-10 39.1 0.0 1.3e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|284167118|ref|YP_003405396.1| - 3.3e-06 27.2 0.0 5.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|284167118|ref|YP_003405396.1| - 8.8e-05 23.0 0.2 0.00024 21.6 0.1 1.8 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain HAD_2 PF13419.6 gi|284167118|ref|YP_003405396.1| - 0.21 11.7 0.1 9.1 6.3 0.0 2.2 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Creatininase PF02633.14 gi|284167121|ref|YP_003405399.1| - 1.8e-66 224.0 0.1 2.1e-66 223.9 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Hepar_II_III PF07940.13 gi|284167122|ref|YP_003405400.1| - 9.2e-15 54.9 1.1 1.8e-14 53.9 1.1 1.5 1 0 0 1 1 1 1 Heparinase II/III-like protein AP_endonuc_2 PF01261.24 gi|284167123|ref|YP_003405401.1| - 2.4e-29 102.3 2.8 3.3e-29 101.8 2.8 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|284167123|ref|YP_003405401.1| - 0.00014 21.6 0.1 0.0012 18.5 0.0 2.2 2 0 0 2 2 2 1 AP endonuclease family 2 C terminus UxuA PF03786.13 gi|284167123|ref|YP_003405401.1| - 0.01 14.7 0.0 0.019 13.8 0.0 1.4 1 1 0 1 1 1 0 D-mannonate dehydratase (UxuA) 2-Hacid_dh_C PF02826.19 gi|284167124|ref|YP_003405402.1| - 1.5e-45 154.7 0.0 2.3e-45 154.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|284167124|ref|YP_003405402.1| - 9.9e-11 41.4 0.0 1.7e-10 40.6 0.0 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|284167124|ref|YP_003405402.1| - 0.022 14.9 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|284167124|ref|YP_003405402.1| - 0.028 14.8 0.0 0.067 13.6 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Gp_dh_N PF00044.24 gi|284167124|ref|YP_003405402.1| - 0.12 12.8 0.1 6 7.3 0.1 2.9 2 1 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain rhaM PF05336.13 gi|284167125|ref|YP_003405403.1| - 1e-13 51.3 0.2 1.2e-13 51.1 0.2 1.0 1 0 0 1 1 1 1 L-rhamnose mutarotase Acyltransf_C PF16076.5 gi|284167125|ref|YP_003405403.1| - 0.3 11.2 1.8 3.2 7.9 0.0 2.6 1 1 1 3 3 3 0 Acyltransferase C-terminus Bac_luciferase PF00296.20 gi|284167126|ref|YP_003405404.1| - 5.9e-59 200.0 0.0 1.5e-58 198.7 0.0 1.6 1 1 0 1 1 1 1 Luciferase-like monooxygenase MR_MLE_C PF13378.6 gi|284167127|ref|YP_003405405.1| - 1.3e-57 194.9 0.1 1.7e-57 194.6 0.1 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284167127|ref|YP_003405405.1| - 2.2e-19 69.8 0.1 4.2e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ADH_N PF08240.12 gi|284167128|ref|YP_003405406.1| - 9.1e-32 109.2 1.0 9.1e-32 109.2 1.0 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284167128|ref|YP_003405406.1| - 3.7e-19 69.0 0.1 5.6e-19 68.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|284167128|ref|YP_003405406.1| - 3.5e-12 46.3 0.1 5.1e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|284167128|ref|YP_003405406.1| - 3.4e-07 31.4 0.0 6e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glyco_hydro_97 PF10566.9 gi|284167129|ref|YP_003405407.1| - 5.5e-67 226.0 3.7 1.2e-66 224.9 3.7 1.5 1 1 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|284167129|ref|YP_003405407.1| - 1.2e-40 139.5 0.0 2.6e-40 138.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 N-terminal GH97_C PF14509.6 gi|284167129|ref|YP_003405407.1| - 8.9e-22 77.1 0.0 9.9e-21 73.8 0.0 2.3 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Amidohydro_2 PF04909.14 gi|284167130|ref|YP_003405408.1| - 4.4e-23 82.5 9.8 5.5e-23 82.2 9.8 1.0 1 0 0 1 1 1 1 Amidohydrolase FAA_hydrolase PF01557.18 gi|284167131|ref|YP_003405409.1| - 4.8e-71 238.9 0.1 5.7e-71 238.6 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|284167131|ref|YP_003405409.1| - 0.00096 20.0 0.1 0.0029 18.4 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) LUD_dom PF02589.15 gi|284167132|ref|YP_003405410.1| - 1.5e-45 155.2 0.1 2.4e-45 154.6 0.1 1.3 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|284167132|ref|YP_003405410.1| - 2.6e-09 37.4 4.7 6.3e-09 36.2 4.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284167132|ref|YP_003405410.1| - 6.6e-08 32.6 3.0 0.0011 19.0 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284167132|ref|YP_003405410.1| - 1.6e-07 31.8 3.5 3e-07 30.9 3.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284167132|ref|YP_003405410.1| - 3.7e-07 30.2 2.1 9.9e-07 28.8 2.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284167132|ref|YP_003405410.1| - 4.6e-06 27.1 6.3 1.1e-05 26.0 6.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284167132|ref|YP_003405410.1| - 1.9e-05 24.7 6.0 9.3e-05 22.5 6.0 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284167132|ref|YP_003405410.1| - 6.7e-05 22.5 13.5 0.0012 18.6 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284167132|ref|YP_003405410.1| - 0.0051 16.8 11.9 0.016 15.2 2.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|284167132|ref|YP_003405410.1| - 0.0074 16.3 14.1 0.14 12.3 3.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|284167132|ref|YP_003405410.1| - 0.011 16.6 7.6 0.066 14.1 1.0 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284167132|ref|YP_003405410.1| - 0.016 15.7 14.4 0.16 12.5 3.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|284167132|ref|YP_003405410.1| - 0.039 13.7 3.1 0.039 13.7 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|284167132|ref|YP_003405410.1| - 0.076 14.0 17.3 0.071 14.1 5.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain ydhR PF08803.11 gi|284167132|ref|YP_003405410.1| - 0.11 12.4 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Putative mono-oxygenase ydhR Fer4_18 PF13746.6 gi|284167132|ref|YP_003405410.1| - 0.11 12.7 9.8 0.083 13.1 1.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284167132|ref|YP_003405410.1| - 1.8 9.3 7.2 1.6 9.6 0.2 3.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|284167132|ref|YP_003405410.1| - 8.9 7.3 15.8 3.1 8.8 3.6 2.5 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain LUD_dom PF02589.15 gi|284167133|ref|YP_003405411.1| - 5e-14 52.4 0.0 1.2e-13 51.3 0.0 1.5 1 1 1 2 2 2 1 LUD domain IclR PF01614.18 gi|284167134|ref|YP_003405412.1| - 2.2e-39 134.2 0.0 3.2e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167134|ref|YP_003405412.1| - 6e-11 42.0 0.2 6.2e-10 38.7 0.1 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284167134|ref|YP_003405412.1| - 3e-06 27.0 0.1 8.7e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|284167134|ref|YP_003405412.1| - 5.7e-06 26.3 0.1 1.2e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284167134|ref|YP_003405412.1| - 1.3e-05 24.9 0.1 3.3e-05 23.6 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284167134|ref|YP_003405412.1| - 4.8e-05 23.2 0.1 0.00091 19.1 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284167134|ref|YP_003405412.1| - 7.8e-05 22.5 0.1 0.00037 20.3 0.0 2.1 3 0 0 3 3 3 1 MarR family HTH_24 PF13412.6 gi|284167134|ref|YP_003405412.1| - 0.00041 19.8 0.0 0.00076 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|284167134|ref|YP_003405412.1| - 0.0048 17.1 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|284167134|ref|YP_003405412.1| - 0.02 14.8 0.0 0.079 12.9 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_43 PF09904.9 gi|284167134|ref|YP_003405412.1| - 0.052 13.5 0.0 1.8 8.5 0.0 2.5 2 1 0 2 2 2 0 Winged helix-turn helix Rrf2 PF02082.20 gi|284167134|ref|YP_003405412.1| - 0.062 13.7 0.0 0.35 11.3 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator RP-C PF03428.13 gi|284167134|ref|YP_003405412.1| - 0.068 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_40 PF14493.6 gi|284167134|ref|YP_003405412.1| - 0.089 13.3 0.2 0.27 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|284167134|ref|YP_003405412.1| - 0.1 12.8 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.27 gi|284167136|ref|YP_003405414.1| - 1.3e-26 93.7 0.0 1.9e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284167136|ref|YP_003405414.1| - 8.4e-15 55.1 0.1 1.6e-14 54.2 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region RsgA_GTPase PF03193.16 gi|284167136|ref|YP_003405414.1| - 0.0027 17.6 0.1 0.0043 17.0 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|284167136|ref|YP_003405414.1| - 0.012 16.0 0.2 0.064 13.6 0.3 1.9 1 1 1 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|284167136|ref|YP_003405414.1| - 0.034 13.9 0.1 0.074 12.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|284167136|ref|YP_003405414.1| - 0.034 14.4 2.7 0.27 11.5 2.7 2.2 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|284167137|ref|YP_003405415.1| - 3.6e-21 76.1 0.0 5.2e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284167137|ref|YP_003405415.1| - 6.4e-18 65.0 0.1 1.5e-17 63.8 0.0 1.7 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284167137|ref|YP_003405415.1| - 4.7e-11 43.0 4.7 6.5e-11 42.6 0.7 2.1 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284167137|ref|YP_003405415.1| - 0.00021 20.8 0.3 0.025 14.0 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284167137|ref|YP_003405415.1| - 0.00027 21.2 0.6 0.0037 17.5 0.6 2.2 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|284167137|ref|YP_003405415.1| - 0.00036 20.3 0.1 0.039 13.7 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_ATPase PF09818.9 gi|284167137|ref|YP_003405415.1| - 0.0036 16.2 0.1 0.0099 14.7 0.1 1.6 1 1 0 1 1 1 1 Predicted ATPase of the ABC class TniB PF05621.11 gi|284167137|ref|YP_003405415.1| - 0.0044 16.5 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial TniB protein AAA_25 PF13481.6 gi|284167137|ref|YP_003405415.1| - 0.0062 16.1 0.1 0.084 12.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284167137|ref|YP_003405415.1| - 0.0096 16.3 0.1 0.018 15.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|284167137|ref|YP_003405415.1| - 0.013 15.6 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|284167137|ref|YP_003405415.1| - 0.031 14.2 0.1 0.099 12.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.21 gi|284167137|ref|YP_003405415.1| - 0.036 13.4 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|284167137|ref|YP_003405415.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|284167137|ref|YP_003405415.1| - 0.12 11.7 0.2 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 KaiC AAA_24 PF13479.6 gi|284167137|ref|YP_003405415.1| - 0.18 11.5 0.0 0.34 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|284167138|ref|YP_003405416.1| - 1.4e-19 70.6 12.0 1.4e-19 70.6 12.0 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|284167138|ref|YP_003405416.1| - 0.093 12.7 6.4 0.39 10.7 0.1 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|284167139|ref|YP_003405417.1| - 2.3e-28 99.2 13.2 2.3e-28 99.2 13.2 2.1 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component UPF0016 PF01169.19 gi|284167139|ref|YP_003405417.1| - 0.98 9.8 10.5 7.4 7.0 2.2 3.3 3 0 0 3 3 3 0 Uncharacterized protein family UPF0016 SBP_bac_5 PF00496.22 gi|284167140|ref|YP_003405418.1| - 3.6e-23 82.1 6.1 5.2e-23 81.6 6.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284167140|ref|YP_003405418.1| - 0.26 11.2 4.1 0.44 10.5 4.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.22 gi|284167141|ref|YP_003405419.1| - 1.7e-20 73.3 6.7 2.6e-20 72.7 6.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284167141|ref|YP_003405419.1| - 0.0049 16.7 2.0 0.0099 15.7 2.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence LptF_LptG PF03739.14 gi|284167142|ref|YP_003405420.1| - 0.034 13.0 0.6 0.038 12.8 0.6 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG ABC2_membrane_3 PF12698.7 gi|284167142|ref|YP_003405420.1| - 3.2 6.8 7.3 4.1 6.4 7.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein RGI_lyase PF18370.1 gi|284167143|ref|YP_003405421.1| - 2.3e-27 95.1 0.0 5.4e-27 93.9 0.0 1.6 1 0 0 1 1 1 1 Rhamnogalacturonan I lyases beta-sheet domain FG-GAP PF01839.23 gi|284167143|ref|YP_003405421.1| - 7.7e-12 45.1 15.8 0.0013 18.8 1.3 3.8 3 0 0 3 3 3 3 FG-GAP repeat VCBS PF13517.6 gi|284167143|ref|YP_003405421.1| - 5.3e-10 39.7 6.1 0.086 13.4 0.2 4.9 5 0 0 5 5 5 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.8 gi|284167143|ref|YP_003405421.1| - 7.9e-05 22.1 3.1 1.8 7.9 0.1 3.4 2 1 1 3 3 3 3 Insecticide toxin TcdB middle/N-terminal region RGI_lyase PF18370.1 gi|284167144|ref|YP_003405422.1| - 7.8e-31 106.2 0.0 1.7e-30 105.1 0.0 1.6 1 0 0 1 1 1 1 Rhamnogalacturonan I lyases beta-sheet domain FG-GAP PF01839.23 gi|284167144|ref|YP_003405422.1| - 8.8e-12 44.9 15.6 0.00015 21.8 1.4 4.0 3 0 0 3 3 3 3 FG-GAP repeat VCBS PF13517.6 gi|284167144|ref|YP_003405422.1| - 8e-07 29.6 16.9 0.068 13.8 0.5 4.9 5 0 0 5 5 5 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.8 gi|284167144|ref|YP_003405422.1| - 0.00023 20.6 3.2 0.6 9.5 0.1 3.3 2 1 1 3 3 3 2 Insecticide toxin TcdB middle/N-terminal region EF-hand_1 PF00036.32 gi|284167144|ref|YP_003405422.1| - 0.68 9.6 4.3 20 5.0 0.1 3.7 3 0 0 3 3 3 0 EF hand Glyco_hydro_42 PF02449.15 gi|284167145|ref|YP_003405423.1| - 2.9e-149 497.5 5.3 2.9e-149 497.5 5.3 1.6 2 0 0 2 2 2 1 Beta-galactosidase Glyco_hydro_42M PF08532.10 gi|284167145|ref|YP_003405423.1| - 7.6e-60 202.0 0.0 1.1e-59 201.5 0.0 1.2 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Cellulase PF00150.18 gi|284167145|ref|YP_003405423.1| - 1.1e-08 34.8 0.0 2e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_14 PF01373.17 gi|284167145|ref|YP_003405423.1| - 8.1e-06 25.0 0.0 0.00025 20.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolase family 14 Glyco_hydro_35 PF01301.19 gi|284167145|ref|YP_003405423.1| - 3.1e-05 23.8 0.2 0.00023 20.9 0.2 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42C PF08533.10 gi|284167145|ref|YP_003405423.1| - 0.0035 17.0 0.0 0.011 15.4 0.0 1.9 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain DUF4434 PF14488.6 gi|284167145|ref|YP_003405423.1| - 0.06 13.4 0.1 0.18 11.8 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4434) DUF4917 PF16263.5 gi|284167145|ref|YP_003405423.1| - 0.21 10.9 0.0 0.36 10.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4917) Usp PF00582.26 gi|284167146|ref|YP_003405424.1| - 2.3e-12 47.6 0.2 4.1e-12 46.8 0.2 1.4 1 1 0 1 1 1 1 Universal stress protein family MR_MLE_C PF13378.6 gi|284167147|ref|YP_003405425.1| - 1.8e-68 230.4 1.2 2.6e-68 229.9 1.2 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284167147|ref|YP_003405425.1| - 3.7e-27 94.9 0.0 6.9e-27 94.0 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Glyco_hydro_4 PF02056.16 gi|284167148|ref|YP_003405426.1| - 1.7e-53 180.9 0.0 3.2e-53 180.0 0.0 1.5 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|284167148|ref|YP_003405426.1| - 6.4e-47 160.3 0.0 8.8e-47 159.9 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|284167148|ref|YP_003405426.1| - 0.2 11.7 0.1 2.2 8.4 0.0 2.2 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Glyco_hydro_2_N PF02837.18 gi|284167149|ref|YP_003405427.1| - 4.5e-11 42.9 0.0 1e-10 41.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.17 gi|284167149|ref|YP_003405427.1| - 5.8e-05 22.4 0.0 9.8e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.21 gi|284167149|ref|YP_003405427.1| - 0.0062 17.2 0.0 0.015 15.9 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Beta_helix PF13229.6 gi|284167150|ref|YP_003405428.1| - 1.4e-12 47.8 20.5 1.5e-06 28.1 10.6 2.7 1 1 1 2 2 2 2 Right handed beta helix region NosD PF05048.13 gi|284167150|ref|YP_003405428.1| - 6.6e-07 28.8 6.3 0.00076 18.8 1.7 2.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Glyco_hydro_28 PF00295.17 gi|284167150|ref|YP_003405428.1| - 0.0037 16.4 0.5 0.0037 16.4 0.5 2.1 2 0 0 2 2 2 1 Glycosyl hydrolases family 28 UCR_Fe-S_N PF10399.9 gi|284167150|ref|YP_003405428.1| - 0.075 12.4 1.0 0.16 11.4 1.0 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Lipase_GDSL_3 PF14606.6 gi|284167151|ref|YP_003405429.1| - 6.4e-23 81.8 0.0 8.3e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.6 gi|284167151|ref|YP_003405429.1| - 6.9e-11 42.9 0.1 9.4e-11 42.4 0.1 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family GxDLY PF14607.6 gi|284167151|ref|YP_003405429.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type Bac_rhamnosid6H PF17389.2 gi|284167152|ref|YP_003405430.1| - 1.5e-39 136.3 0.0 1.8e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Bac_rhamnosid_N PF08531.10 gi|284167152|ref|YP_003405430.1| - 2.7e-22 79.4 0.0 6.7e-22 78.1 0.0 1.7 1 0 0 1 1 1 1 Alpha-L-rhamnosidase N-terminal domain Bac_rhamnosid PF05592.11 gi|284167152|ref|YP_003405430.1| - 2.8e-11 43.3 0.0 1.8e-10 40.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase concanavalin-like domain Bac_rhamnosid_C PF17390.2 gi|284167152|ref|YP_003405430.1| - 7.3e-09 35.3 0.0 1.6e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase C-terminal domain Oxygenase-NA PF09859.9 gi|284167152|ref|YP_003405430.1| - 0.016 14.8 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Oxygenase, catalysing oxidative methylation of damaged DNA DUF608 PF04685.13 gi|284167152|ref|YP_003405430.1| - 0.086 12.0 0.0 0.3 10.2 0.0 1.7 1 1 0 1 1 1 0 Glycosyl-hydrolase family 116, catalytic region RicinB_lectin_2 PF14200.6 gi|284167153|ref|YP_003405431.1| - 1e-17 64.6 1.8 1.4e-08 35.3 0.0 4.0 1 1 2 3 3 3 3 Ricin-type beta-trefoil lectin domain-like Beta_helix PF13229.6 gi|284167153|ref|YP_003405431.1| - 5e-06 26.5 13.4 0.00037 20.4 10.7 3.1 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|284167153|ref|YP_003405431.1| - 0.014 14.7 0.9 0.042 13.1 0.7 1.8 1 1 0 1 1 1 0 Periplasmic copper-binding protein (NosD) Pectate_lyase22 PF14583.6 gi|284167154|ref|YP_003405432.1| - 1.5e-27 96.3 0.2 8.5e-26 90.5 0.2 2.0 1 1 0 1 1 1 1 Oligogalacturonate lyase PD40 PF07676.12 gi|284167154|ref|YP_003405432.1| - 5.1e-05 23.1 4.3 0.07 13.1 0.1 2.8 2 0 0 2 2 2 2 WD40-like Beta Propeller Repeat DUF2264 PF10022.9 gi|284167155|ref|YP_003405433.1| - 6.8e-129 430.0 0.1 8.2e-129 429.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) Glyco_hydro_2_C PF02836.17 gi|284167156|ref|YP_003405434.1| - 2.8e-107 358.3 0.0 3.9e-107 357.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.17 gi|284167156|ref|YP_003405434.1| - 8.6e-73 244.9 0.0 2.3e-71 240.2 0.0 2.2 2 0 0 2 2 2 1 Beta galactosidase small chain Glyco_hydro_2_N PF02837.18 gi|284167156|ref|YP_003405434.1| - 2.1e-53 180.7 0.1 4.3e-53 179.7 0.1 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain DUF4981 PF16353.5 gi|284167156|ref|YP_003405434.1| - 4.3e-27 94.4 0.0 7e-26 90.5 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function(DUF4981) Glyco_hydro_2 PF00703.21 gi|284167156|ref|YP_003405434.1| - 3.2e-14 53.5 0.0 7.3e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 gi|284167156|ref|YP_003405434.1| - 0.03 14.9 0.1 0.071 13.7 0.1 1.6 1 0 0 1 1 1 0 Beta-galactosidase jelly roll domain LEA_2 PF03168.13 gi|284167156|ref|YP_003405434.1| - 0.043 14.3 0.0 0.33 11.5 0.0 2.6 3 0 0 3 3 3 0 Late embryogenesis abundant protein Fn3-like PF14310.6 gi|284167156|ref|YP_003405434.1| - 0.081 13.0 1.5 20 5.4 0.0 3.3 3 0 0 3 3 3 0 Fibronectin type III-like domain Glyco_hydro_42 PF02449.15 gi|284167156|ref|YP_003405434.1| - 0.098 12.0 0.1 8.5 5.6 0.1 2.3 2 0 0 2 2 2 0 Beta-galactosidase Glyco_hydro_115 PF15979.5 gi|284167157|ref|YP_003405435.1| - 8.3e-133 443.0 0.0 1.1e-132 442.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 115 GH115_C PF17829.1 gi|284167157|ref|YP_003405435.1| - 6.1e-37 127.1 0.0 9.7e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 Gylcosyl hydrolase family 115 C-terminal domain Glyco_hydro_67N PF03648.14 gi|284167157|ref|YP_003405435.1| - 0.0025 18.1 0.0 0.0046 17.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus RicinB_lectin_2 PF14200.6 gi|284167158|ref|YP_003405436.1| - 6.1e-26 91.0 0.0 9.9e-16 58.3 0.0 3.2 2 1 1 3 3 3 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284167158|ref|YP_003405436.1| - 1e-07 32.2 0.0 0.00025 21.3 0.0 2.3 1 1 1 2 2 2 2 Ricin-type beta-trefoil lectin domain Beta_helix PF13229.6 gi|284167158|ref|YP_003405436.1| - 0.0081 16.0 16.8 0.034 14.0 10.3 3.2 2 1 1 3 3 3 2 Right handed beta helix region NosD PF05048.13 gi|284167158|ref|YP_003405436.1| - 0.056 12.7 6.1 0.13 11.5 6.1 1.6 1 1 0 1 1 1 0 Periplasmic copper-binding protein (NosD) UxuA PF03786.13 gi|284167159|ref|YP_003405437.1| - 1.2e-44 152.6 0.0 7.6e-37 126.9 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|284167159|ref|YP_003405437.1| - 2.1e-11 43.6 0.0 4.5e-11 42.6 0.0 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_2_C PF02836.17 gi|284167160|ref|YP_003405438.1| - 4.1e-52 177.2 0.2 7.2e-43 146.8 0.1 2.6 2 1 0 2 2 2 2 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.17 gi|284167160|ref|YP_003405438.1| - 8.8e-52 176.1 0.0 4.7e-41 141.0 0.1 2.3 2 0 0 2 2 2 2 Beta galactosidase small chain Glyco_hydro_2_N PF02837.18 gi|284167160|ref|YP_003405438.1| - 2.4e-32 112.2 2.4 6.3e-31 107.5 2.0 3.0 2 1 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Laminin_G_3 PF13385.6 gi|284167160|ref|YP_003405438.1| - 1.2e-29 103.5 3.1 3.4e-18 66.2 0.9 3.4 3 0 0 3 3 3 2 Concanavalin A-like lectin/glucanases superfamily DUF4981 PF16353.5 gi|284167160|ref|YP_003405438.1| - 3.2e-25 88.4 0.0 8.7e-24 83.8 0.0 3.4 3 0 0 3 3 3 1 Domain of unknown function(DUF4981) Glyco_hydro_2 PF00703.21 gi|284167160|ref|YP_003405438.1| - 3.5e-14 53.4 0.0 5.6e-13 49.5 0.0 2.6 1 1 0 1 1 1 1 Glycosyl hydrolases family 2 NPCBM_assoc PF10633.9 gi|284167160|ref|YP_003405438.1| - 0.011 16.0 3.6 12 6.3 0.0 5.2 5 0 0 5 5 5 0 NPCBM-associated, NEW3 domain of alpha-galactosidase TAT_signal PF10518.9 gi|284167160|ref|YP_003405438.1| - 0.014 15.2 0.9 0.027 14.3 0.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4988 PF16378.5 gi|284167160|ref|YP_003405438.1| - 0.014 15.0 0.0 0.18 11.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function PfkB PF00294.24 gi|284167161|ref|YP_003405439.1| - 4.6e-50 170.6 0.2 5.6e-50 170.4 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase OrfB_Zn_ribbon PF07282.11 gi|284167162|ref|YP_003405440.1| - 7.7e-23 80.2 1.4 1.7e-22 79.1 1.4 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|284167162|ref|YP_003405440.1| - 4e-17 62.5 0.0 1.2e-16 61.1 0.0 1.8 1 1 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|284167162|ref|YP_003405440.1| - 0.00086 19.6 1.0 0.002 18.4 1.0 1.6 1 0 0 1 1 1 1 C1 domain TF_Zn_Ribbon PF08271.12 gi|284167162|ref|YP_003405440.1| - 0.0079 15.7 5.5 0.025 14.1 5.5 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_L37ae PF01780.19 gi|284167162|ref|YP_003405440.1| - 0.024 14.7 1.8 0.079 13.1 0.8 2.2 2 0 0 2 2 2 0 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|284167162|ref|YP_003405440.1| - 0.21 11.6 4.5 0.59 10.1 4.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Aldolase PF01081.19 gi|284167163|ref|YP_003405441.1| - 5e-43 146.8 3.5 5.9e-43 146.6 3.5 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.17 gi|284167163|ref|YP_003405441.1| - 0.0097 15.3 2.2 0.069 12.5 2.2 2.6 1 1 0 1 1 1 1 Thiamine monophosphate synthase DUF561 PF04481.12 gi|284167163|ref|YP_003405441.1| - 0.063 12.4 1.1 5.2 6.2 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF561) NanE PF04131.14 gi|284167163|ref|YP_003405441.1| - 0.091 11.9 3.6 7.7 5.7 0.1 3.3 2 1 0 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.25 gi|284167163|ref|YP_003405441.1| - 0.57 9.1 5.7 0.19 10.7 1.1 2.2 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain DDE_Tnp_IS240 PF13610.6 gi|284167164|ref|YP_003405442.1| - 1.4e-35 122.5 0.0 2e-35 122.0 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|284167164|ref|YP_003405442.1| - 5.1e-09 35.8 0.5 9e-09 35.0 0.5 1.4 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|284167164|ref|YP_003405442.1| - 0.00022 21.4 0.1 0.00057 20.1 0.1 1.8 1 1 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|284167164|ref|YP_003405442.1| - 0.01 16.0 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 Integrase core domain DDE_3 PF13358.6 gi|284167164|ref|YP_003405442.1| - 0.024 14.4 0.0 0.44 10.3 0.0 2.2 2 0 0 2 2 2 0 DDE superfamily endonuclease RNA_ligase PF09414.10 gi|284167165|ref|YP_003405443.1| - 4.1e-17 63.0 0.0 6.4e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 RNA ligase Cdc6_C PF09079.11 gi|284167166|ref|YP_003405444.1| - 5e-19 68.1 0.0 2.8e-18 65.7 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284167166|ref|YP_003405444.1| - 8.8e-11 42.2 0.0 2.4e-10 40.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284167166|ref|YP_003405444.1| - 5.2e-10 40.0 2.2 1.1e-09 38.9 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284167166|ref|YP_003405444.1| - 9.5e-06 26.1 0.3 3.3e-05 24.3 0.3 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|284167166|ref|YP_003405444.1| - 2.8e-05 23.9 0.3 0.00016 21.4 0.1 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|284167166|ref|YP_003405444.1| - 5.5e-05 22.5 0.0 0.0001 21.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|284167166|ref|YP_003405444.1| - 9.7e-05 22.4 0.0 0.00028 20.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|284167166|ref|YP_003405444.1| - 0.00012 22.0 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|284167166|ref|YP_003405444.1| - 0.0013 18.8 0.1 0.0033 17.5 0.1 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|284167166|ref|YP_003405444.1| - 0.0046 16.4 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|284167166|ref|YP_003405444.1| - 0.0076 16.2 0.2 0.029 14.3 0.0 2.0 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|284167166|ref|YP_003405444.1| - 0.012 14.4 1.6 0.75 8.5 0.8 2.2 2 0 0 2 2 2 0 AAA domain DUF2791 PF10923.8 gi|284167166|ref|YP_003405444.1| - 0.028 13.3 0.0 0.053 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) AAA_7 PF12775.7 gi|284167166|ref|YP_003405444.1| - 0.034 13.7 0.1 0.076 12.5 0.1 1.5 1 1 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|284167166|ref|YP_003405444.1| - 0.035 14.5 0.0 0.097 13.1 0.0 1.8 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|284167166|ref|YP_003405444.1| - 0.035 14.2 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Rad51 PF08423.11 gi|284167166|ref|YP_003405444.1| - 0.037 13.3 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad51 PhoH PF02562.16 gi|284167166|ref|YP_003405444.1| - 0.05 13.0 0.3 9.5 5.6 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein ABC_tran PF00005.27 gi|284167166|ref|YP_003405444.1| - 0.051 14.1 0.3 0.14 12.7 0.3 2.0 1 1 0 1 1 1 0 ABC transporter RFX_DNA_binding PF02257.15 gi|284167166|ref|YP_003405444.1| - 0.1 13.2 0.0 0.23 12.1 0.0 1.5 1 0 0 1 1 1 0 RFX DNA-binding domain TsaE PF02367.17 gi|284167166|ref|YP_003405444.1| - 0.1 12.6 0.1 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PIF1 PF05970.14 gi|284167166|ref|YP_003405444.1| - 0.2 10.8 1.3 0.33 10.1 0.2 2.0 2 1 0 2 2 2 0 PIF1-like helicase DEAD PF00270.29 gi|284167166|ref|YP_003405444.1| - 0.38 10.5 3.5 7.8 6.2 0.1 2.8 2 1 1 3 3 3 0 DEAD/DEAH box helicase Ribosomal_S17e PF00833.18 gi|284167167|ref|YP_003405445.1| - 1.7e-10 40.9 0.1 1.8e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal S17 HNF-1_N PF04814.13 gi|284167167|ref|YP_003405445.1| - 0.061 13.9 0.1 0.065 13.9 0.1 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Amidohydro_1 PF01979.20 gi|284167168|ref|YP_003405446.1| - 4.5e-69 233.4 0.3 1.4e-68 231.7 0.1 1.7 1 1 1 2 2 2 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284167168|ref|YP_003405446.1| - 1.6e-10 41.1 1.3 4.1e-10 39.7 0.1 2.0 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|284167168|ref|YP_003405446.1| - 0.00098 18.5 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase ABC_tran PF00005.27 gi|284167169|ref|YP_003405447.1| - 5.8e-27 94.9 0.0 9.2e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284167169|ref|YP_003405447.1| - 1.2e-05 25.3 0.3 0.031 14.1 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|284167169|ref|YP_003405447.1| - 0.00011 22.3 0.0 0.00039 20.5 0.0 2.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|284167169|ref|YP_003405447.1| - 0.00018 21.9 1.2 0.00052 20.4 0.8 1.9 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|284167169|ref|YP_003405447.1| - 0.00025 20.5 0.0 0.043 13.2 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|284167169|ref|YP_003405447.1| - 0.0009 18.9 0.3 0.0029 17.3 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284167169|ref|YP_003405447.1| - 0.0014 18.4 0.8 0.0024 17.6 0.8 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|284167169|ref|YP_003405447.1| - 0.0055 17.2 0.0 0.0084 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284167169|ref|YP_003405447.1| - 0.0056 16.6 0.0 0.012 15.5 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase DUF3584 PF12128.8 gi|284167169|ref|YP_003405447.1| - 0.0067 14.0 0.0 0.0093 13.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_22 PF13401.6 gi|284167169|ref|YP_003405447.1| - 0.011 16.0 0.3 0.024 14.9 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284167169|ref|YP_003405447.1| - 0.015 15.4 0.4 0.03 14.5 0.4 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|284167169|ref|YP_003405447.1| - 0.033 13.5 1.0 0.047 13.0 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 gi|284167169|ref|YP_003405447.1| - 0.037 14.0 0.0 0.087 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|284167169|ref|YP_003405447.1| - 0.043 14.2 0.2 0.11 13.0 0.1 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|284167169|ref|YP_003405447.1| - 0.044 14.0 1.1 0.1 12.8 0.4 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|284167169|ref|YP_003405447.1| - 0.05 13.3 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|284167169|ref|YP_003405447.1| - 0.069 12.9 0.1 0.77 9.5 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein cobW PF02492.19 gi|284167169|ref|YP_003405447.1| - 0.071 12.7 0.6 0.21 11.2 0.2 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|284167169|ref|YP_003405447.1| - 0.094 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|284167169|ref|YP_003405447.1| - 0.13 12.2 0.3 0.46 10.4 0.1 1.9 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|284167169|ref|YP_003405447.1| - 0.16 12.5 0.2 0.31 11.6 0.2 1.5 1 0 0 1 1 1 0 AAA domain Phosphonate-bd PF12974.7 gi|284167170|ref|YP_003405448.1| - 7.1e-59 199.3 0.5 8.7e-59 199.0 0.5 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.12 gi|284167170|ref|YP_003405448.1| - 0.00043 20.0 0.1 0.00098 18.8 0.1 1.6 2 0 0 2 2 2 1 Substrate binding domain of ABC-type glycine betaine transport system Lipoprotein_9 PF03180.14 gi|284167170|ref|YP_003405448.1| - 0.033 13.3 0.0 0.044 12.9 0.0 1.2 1 0 0 1 1 1 0 NLPA lipoprotein SBP_bac_3 PF00497.20 gi|284167170|ref|YP_003405448.1| - 0.043 13.2 0.1 0.11 12.0 0.0 1.8 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 TusA PF01206.17 gi|284167171|ref|YP_003405449.1| - 3.5e-16 58.8 0.1 3.8e-16 58.7 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Ribonuc_L-PSP PF01042.21 gi|284167172|ref|YP_003405450.1| - 6.1e-40 136.0 0.0 6.7e-40 135.9 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Xan_ur_permease PF00860.20 gi|284167173|ref|YP_003405451.1| - 1.2e-35 122.9 41.2 1.5e-35 122.7 41.2 1.1 1 0 0 1 1 1 1 Permease family TNFR_16_TM PF18422.1 gi|284167173|ref|YP_003405451.1| - 1 9.4 8.5 0.54 10.3 2.5 3.1 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Pilin_N PF07790.11 gi|284167173|ref|YP_003405451.1| - 6.2 7.8 9.1 0.17 12.8 0.6 2.9 3 0 0 3 3 3 0 Archaeal Type IV pilin, N-terminal MFS_1 PF07690.16 gi|284167174|ref|YP_003405452.1| - 6.1e-53 180.0 93.4 4.3e-45 154.2 55.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|284167174|ref|YP_003405452.1| - 8.6e-06 24.8 5.0 0.0098 14.7 0.0 2.3 2 0 0 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|284167174|ref|YP_003405452.1| - 0.00068 18.2 27.3 0.0014 17.1 27.3 1.4 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|284167174|ref|YP_003405452.1| - 0.097 11.5 17.9 0.27 10.1 0.1 2.2 2 0 0 2 2 2 0 MFS_1 like family MoeA_N PF03453.17 gi|284167175|ref|YP_003405453.1| - 4.2e-31 107.9 1.0 5.8e-31 107.4 0.2 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|284167175|ref|YP_003405453.1| - 4.2e-25 88.1 0.1 7.4e-25 87.3 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain 7TMR-HDED PF07697.11 gi|284167175|ref|YP_003405453.1| - 0.21 11.7 0.0 0.5 10.4 0.0 1.6 1 0 0 1 1 1 0 7TM-HD extracellular OrfB_Zn_ribbon PF07282.11 gi|284167177|ref|YP_003405455.1| - 8.8e-23 80.0 2.3 1.5e-22 79.2 0.1 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|284167177|ref|YP_003405455.1| - 8.7e-21 74.4 0.2 2.6e-20 72.8 0.0 1.9 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|284167177|ref|YP_003405455.1| - 1.7e-07 30.6 0.1 3.6e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|284167177|ref|YP_003405455.1| - 0.24 11.5 2.8 0.18 11.9 1.1 1.7 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284167177|ref|YP_003405455.1| - 1.6 8.9 8.6 0.9 9.7 0.8 2.7 2 1 1 3 3 3 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|284167177|ref|YP_003405455.1| - 5.2 6.9 5.7 2 8.2 2.0 2.2 2 1 1 3 3 3 0 Rubredoxin metal binding domain Xan_ur_permease PF00860.20 gi|284167178|ref|YP_003405456.1| - 6.2e-94 314.9 45.8 7.8e-94 314.5 45.8 1.1 1 0 0 1 1 1 1 Permease family Adenine_deam_C PF13382.6 gi|284167180|ref|YP_003405458.1| - 4.7e-53 179.0 0.8 7.6e-53 178.3 0.0 1.7 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.20 gi|284167180|ref|YP_003405458.1| - 7.2e-30 104.5 1.0 3.5e-14 52.9 0.4 2.4 2 1 1 3 3 3 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284167180|ref|YP_003405458.1| - 1.6e-09 37.8 3.7 0.00034 20.2 0.0 3.2 2 1 1 3 3 3 2 Amidohydrolase family Acetyltransf_1 PF00583.25 gi|284167181|ref|YP_003405459.1| - 1.8e-09 37.9 0.0 3.2e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284167181|ref|YP_003405459.1| - 6.7e-05 23.2 0.1 0.00011 22.5 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|284167181|ref|YP_003405459.1| - 0.00016 21.6 0.0 0.00023 21.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284167181|ref|YP_003405459.1| - 0.0016 18.6 0.0 0.0022 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4158 PF13700.6 gi|284167181|ref|YP_003405459.1| - 0.012 15.4 0.3 2.6 7.8 0.1 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4158) NTP_transf_3 PF12804.7 gi|284167182|ref|YP_003405460.1| - 7.5e-41 140.2 0.5 9.3e-41 139.8 0.5 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|284167182|ref|YP_003405460.1| - 3e-06 27.1 0.1 4e-06 26.7 0.1 1.1 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|284167182|ref|YP_003405460.1| - 0.0024 17.5 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|284167182|ref|YP_003405460.1| - 0.029 14.3 0.0 0.034 14.0 0.0 1.1 1 0 0 1 1 1 0 Cytidylyltransferase DprA_WH PF17782.1 gi|284167182|ref|YP_003405460.1| - 0.06 13.5 0.6 0.15 12.2 0.1 1.9 2 0 0 2 2 2 0 DprA winged helix domain TusA PF01206.17 gi|284167184|ref|YP_003405462.1| - 2.5e-17 62.5 0.0 2.8e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA ACT_5 PF13710.6 gi|284167184|ref|YP_003405462.1| - 0.077 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 ACT domain AIRS_C PF02769.22 gi|284167185|ref|YP_003405463.1| - 1.6e-22 80.3 0.5 2.8e-22 79.5 0.5 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|284167185|ref|YP_003405463.1| - 2.4e-09 37.7 2.4 2.4e-09 37.7 2.4 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain XdhC_C PF13478.6 gi|284167186|ref|YP_003405464.1| - 9.3e-36 123.1 0.7 6e-35 120.5 0.1 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|284167186|ref|YP_003405464.1| - 3.2e-19 68.9 7.2 1.6e-18 66.6 0.6 3.4 2 0 0 2 2 2 1 XdhC and CoxI family Pyr_redox_2 PF07992.14 gi|284167186|ref|YP_003405464.1| - 3.2e-07 29.9 1.0 0.0014 18.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284167186|ref|YP_003405464.1| - 1.9e-05 25.1 0.3 0.0027 18.2 0.0 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|284167186|ref|YP_003405464.1| - 0.00017 21.8 3.5 0.13 12.6 0.1 2.7 3 0 0 3 3 3 2 TrkA-N domain 3HCDH_N PF02737.18 gi|284167186|ref|YP_003405464.1| - 0.00088 19.2 2.3 0.37 10.7 0.1 3.1 3 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LpxI_N PF17930.1 gi|284167186|ref|YP_003405464.1| - 0.0077 16.1 0.1 1 9.2 0.0 2.4 2 0 0 2 2 2 1 LpxI N-terminal domain 2-Hacid_dh_C PF02826.19 gi|284167186|ref|YP_003405464.1| - 0.019 14.3 0.1 0.4 10.0 0.0 2.5 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DsrH PF04077.12 gi|284167187|ref|YP_003405465.1| - 3.8e-06 26.9 1.3 4.3e-05 23.5 1.3 2.0 1 1 0 1 1 1 1 DsrH like protein DrsE PF02635.15 gi|284167188|ref|YP_003405466.1| - 9.9e-11 42.0 0.0 1.1e-10 41.9 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 gi|284167189|ref|YP_003405467.1| - 1.2e-30 106.3 0.0 1.3e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Ald_Xan_dh_C2 PF02738.18 gi|284167190|ref|YP_003405468.1| - 1.7e-149 498.8 0.3 2.6e-149 498.2 0.3 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|284167190|ref|YP_003405468.1| - 1.9e-23 82.9 0.2 3.6e-23 82.0 0.2 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|284167191|ref|YP_003405469.1| - 3.4e-32 110.3 0.0 3.4e-32 110.3 0.0 1.7 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|284167191|ref|YP_003405469.1| - 1.3e-09 37.9 0.3 1.3e-09 37.9 0.3 2.2 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|284167191|ref|YP_003405469.1| - 3e-07 30.4 0.1 5e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|284167191|ref|YP_003405469.1| - 0.00023 21.1 1.4 0.00066 19.7 1.4 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|284167192|ref|YP_003405470.1| - 2.4e-146 488.4 3.1 4.3e-146 487.6 3.1 1.4 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|284167192|ref|YP_003405470.1| - 2e-22 79.6 1.7 4.4e-22 78.5 1.7 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|284167193|ref|YP_003405471.1| - 9.7e-30 102.4 0.0 2e-29 101.4 0.0 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|284167193|ref|YP_003405471.1| - 3.3e-05 23.8 1.7 3.3e-05 23.8 1.7 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|284167193|ref|YP_003405471.1| - 0.0052 16.8 0.1 0.009 16.0 0.1 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain PCYCGC PF13798.6 gi|284167193|ref|YP_003405471.1| - 0.12 12.2 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function with PCYCGC motif F420_oxidored PF03807.17 gi|284167194|ref|YP_003405472.1| - 4.7e-18 65.6 0.2 1.3e-17 64.1 0.0 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|284167194|ref|YP_003405472.1| - 0.0019 18.5 0.0 0.0091 16.3 0.0 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PDH PF02153.17 gi|284167194|ref|YP_003405472.1| - 0.0019 17.2 0.0 0.074 12.0 0.0 2.1 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|284167194|ref|YP_003405472.1| - 0.088 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.24 gi|284167194|ref|YP_003405472.1| - 0.1 13.1 0.0 0.2 12.1 0.0 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284167194|ref|YP_003405472.1| - 0.1 12.2 0.0 0.29 10.7 0.0 1.7 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain BPD_transp_1 PF00528.22 gi|284167195|ref|YP_003405473.1| - 1.2e-15 57.7 6.4 1.2e-15 57.7 6.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF212 PF02681.14 gi|284167195|ref|YP_003405473.1| - 0.027 14.6 0.4 0.075 13.2 0.4 1.8 1 0 0 1 1 1 0 Divergent PAP2 family YbgT_YccB PF08173.11 gi|284167195|ref|YP_003405473.1| - 2.2 8.5 5.0 4.2 7.6 1.3 3.0 2 0 0 2 2 2 0 Membrane bound YbgT-like protein Peptidase_M20 PF01546.28 gi|284167196|ref|YP_003405474.1| - 7.1e-32 110.8 0.9 1.1e-31 110.1 0.9 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284167196|ref|YP_003405474.1| - 5e-09 36.0 0.0 8.9e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|284167196|ref|YP_003405474.1| - 7.2e-06 25.8 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Amidohydro_3 PF07969.11 gi|284167197|ref|YP_003405475.1| - 2.1e-30 106.6 4.6 6e-30 105.1 4.6 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|284167197|ref|YP_003405475.1| - 1.2e-09 38.0 0.3 1.9e-05 24.2 0.0 2.8 2 1 0 2 2 2 2 Amidohydrolase family Bac_luciferase PF00296.20 gi|284167198|ref|YP_003405476.1| - 3.1e-59 201.0 0.0 3.7e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3243 PF11588.8 gi|284167198|ref|YP_003405476.1| - 0.089 13.1 0.1 0.61 10.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) PALP PF00291.25 gi|284167199|ref|YP_003405477.1| - 6e-73 245.8 0.9 7.2e-73 245.6 0.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf_PR_Knuckle PF18445.1 gi|284167199|ref|YP_003405477.1| - 0.11 12.3 0.2 0.23 11.3 0.2 1.4 1 0 0 1 1 1 0 PR zinc knuckle motif Inositol_P PF00459.25 gi|284167200|ref|YP_003405478.1| - 5.8e-61 206.4 0.2 1.4e-60 205.1 0.3 1.6 2 0 0 2 2 2 1 Inositol monophosphatase family NAD_kinase PF01513.21 gi|284167200|ref|YP_003405478.1| - 1.3e-31 109.9 3.0 1.9e-31 109.4 0.3 2.1 2 0 0 2 2 2 1 ATP-NAD kinase FBPase PF00316.20 gi|284167200|ref|YP_003405478.1| - 0.0046 16.4 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain DUF5512 PF17631.2 gi|284167200|ref|YP_003405478.1| - 0.3 11.1 1.0 0.89 9.6 0.9 1.8 1 1 0 1 1 1 0 Family of unknown function (DUF5512) Amidohydro_1 PF01979.20 gi|284167201|ref|YP_003405479.1| - 2.7e-13 50.0 0.0 5.3e-13 49.0 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284167201|ref|YP_003405479.1| - 3.7e-09 36.6 1.6 0.001 18.7 0.5 2.6 3 0 0 3 3 3 2 Amidohydrolase family Urease_alpha PF00449.20 gi|284167201|ref|YP_003405479.1| - 0.2 12.0 1.7 0.37 11.1 0.6 1.9 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Amidohydro_1 PF01979.20 gi|284167202|ref|YP_003405480.1| - 4.7e-46 157.7 0.0 5.6e-46 157.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284167202|ref|YP_003405480.1| - 5.6e-16 59.1 0.2 4e-10 39.8 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|284167202|ref|YP_003405480.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase Plectin PF00681.20 gi|284167203|ref|YP_003405481.1| - 0.1 12.5 0.1 2.5 8.0 0.0 2.6 2 0 0 2 2 2 0 Plectin repeat AAA_23 PF13476.6 gi|284167204|ref|YP_003405482.1| - 2.6e-09 37.9 23.3 2.6e-09 37.9 23.3 4.2 1 1 1 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|284167204|ref|YP_003405482.1| - 5.4e-08 32.9 0.0 3.1e-06 27.1 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain TPR_MLP1_2 PF07926.12 gi|284167204|ref|YP_003405482.1| - 6.7e-07 29.4 70.5 0.0015 18.5 25.7 5.0 3 1 1 4 4 4 3 TPR/MLP1/MLP2-like protein Atg14 PF10186.9 gi|284167204|ref|YP_003405482.1| - 3e-05 23.3 57.9 0.0016 17.6 9.4 3.3 1 1 2 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 FliJ PF02050.16 gi|284167204|ref|YP_003405482.1| - 0.0001 22.5 56.6 0.0026 18.0 9.6 6.3 3 2 3 7 7 7 2 Flagellar FliJ protein AAA_13 PF13166.6 gi|284167204|ref|YP_003405482.1| - 0.00025 19.9 45.9 0.0056 15.4 2.9 3.3 1 1 2 3 3 3 2 AAA domain DUF4795 PF16043.5 gi|284167204|ref|YP_003405482.1| - 0.0011 18.7 40.7 0.1 12.2 14.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|284167204|ref|YP_003405482.1| - 0.0021 18.0 40.7 0.013 15.5 10.4 4.7 2 2 3 5 5 5 3 Laminin Domain II GAS PF13851.6 gi|284167204|ref|YP_003405482.1| - 0.0031 16.9 65.5 0.16 11.3 9.6 4.1 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding EzrA PF06160.12 gi|284167204|ref|YP_003405482.1| - 0.0054 15.0 47.2 0.072 11.3 22.5 2.3 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA SMC_N PF02463.19 gi|284167204|ref|YP_003405482.1| - 0.0062 16.0 0.0 0.0062 16.0 0.0 2.5 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|284167204|ref|YP_003405482.1| - 0.0083 16.0 2.7 0.0083 16.0 2.7 2.9 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system CENP-H PF05837.12 gi|284167204|ref|YP_003405482.1| - 0.011 16.1 7.3 0.011 16.1 7.3 5.0 4 1 1 5 5 5 0 Centromere protein H (CENP-H) DUF1664 PF07889.12 gi|284167204|ref|YP_003405482.1| - 0.014 15.4 39.7 0.78 9.8 1.1 5.6 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.7 gi|284167204|ref|YP_003405482.1| - 0.017 15.3 24.2 0.017 15.3 24.2 3.7 2 2 1 3 3 3 0 Tropomyosin like Med9 PF07544.13 gi|284167204|ref|YP_003405482.1| - 0.02 14.9 5.1 0.02 14.9 5.1 6.4 3 2 3 6 6 6 0 RNA polymerase II transcription mediator complex subunit 9 BLOC1_2 PF10046.9 gi|284167204|ref|YP_003405482.1| - 0.033 14.5 38.5 0.03 14.6 3.0 5.6 3 2 0 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|284167204|ref|YP_003405482.1| - 0.04 12.8 68.0 0.45 9.3 19.6 3.4 1 1 1 3 3 3 0 Spc7 kinetochore protein Tenui_NS3 PF05310.12 gi|284167204|ref|YP_003405482.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Tenuivirus movement protein MscS_porin PF12795.7 gi|284167204|ref|YP_003405482.1| - 0.11 12.0 64.6 0.088 12.3 15.7 4.2 2 2 2 4 4 4 0 Mechanosensitive ion channel porin domain DUF3584 PF12128.8 gi|284167204|ref|YP_003405482.1| - 0.35 8.3 62.3 1.9 5.9 7.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3584) NPV_P10 PF05531.12 gi|284167204|ref|YP_003405482.1| - 0.51 10.9 23.9 0.3 11.6 1.3 5.2 4 2 0 5 5 4 0 Nucleopolyhedrovirus P10 protein HMMR_N PF15905.5 gi|284167204|ref|YP_003405482.1| - 0.57 9.6 64.5 0.05 13.1 13.8 4.3 2 2 1 4 4 4 0 Hyaluronan mediated motility receptor N-terminal FlaC_arch PF05377.11 gi|284167204|ref|YP_003405482.1| - 0.59 10.6 47.3 2.2 8.8 0.7 8.3 3 3 7 10 10 10 0 Flagella accessory protein C (FlaC) Fib_alpha PF08702.10 gi|284167204|ref|YP_003405482.1| - 0.63 10.2 40.1 0.55 10.4 9.7 4.4 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family IFT57 PF10498.9 gi|284167204|ref|YP_003405482.1| - 0.67 8.9 49.7 0.55 9.1 20.6 3.8 2 2 2 4 4 4 0 Intra-flagellar transport protein 57 ABC_tran_CTD PF16326.5 gi|284167204|ref|YP_003405482.1| - 2.3 8.5 73.0 0.56 10.5 8.0 6.0 2 2 4 6 6 6 0 ABC transporter C-terminal domain TMF_TATA_bd PF12325.8 gi|284167204|ref|YP_003405482.1| - 3.1 8.0 70.5 0.054 13.7 6.8 5.8 2 2 3 5 5 5 0 TATA element modulatory factor 1 TATA binding T3SSipB PF16535.5 gi|284167204|ref|YP_003405482.1| - 4.1 7.9 28.6 21 5.5 1.7 4.6 2 2 1 3 3 3 0 Type III cell invasion protein SipB CENP-F_leu_zip PF10473.9 gi|284167204|ref|YP_003405482.1| - 4.4 7.3 74.8 2 8.5 14.1 4.6 2 2 3 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DHR10 PF18595.1 gi|284167204|ref|YP_003405482.1| - 4.7 7.3 85.7 0.46 10.6 7.9 6.1 2 1 2 5 5 4 0 Designed helical repeat protein 10 domain DUF745 PF05335.13 gi|284167204|ref|YP_003405482.1| - 6 6.6 37.2 0.14 11.8 13.9 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF745) Fez1 PF06818.15 gi|284167204|ref|YP_003405482.1| - 6.6 7.1 64.7 3.7 8.0 18.8 3.8 1 1 3 4 4 4 0 Fez1 DUF4407 PF14362.6 gi|284167204|ref|YP_003405482.1| - 7.1 5.9 53.3 0.84 8.9 19.7 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) YceD PF02620.17 gi|284167206|ref|YP_003405484.1| - 0.34 11.0 4.1 0.8 9.8 0.4 2.4 2 0 0 2 2 2 0 Large ribosomal RNA subunit accumulation protein YceD zinc_ribbon_2 PF13240.6 gi|284167206|ref|YP_003405484.1| - 0.36 10.6 0.0 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 zinc-ribbon domain DUF2061 PF09834.9 gi|284167207|ref|YP_003405485.1| - 6.4e-18 65.0 1.6 6.4e-18 65.0 1.6 1.3 2 0 0 2 2 2 1 Predicted membrane protein (DUF2061) PhoR PF11808.8 gi|284167207|ref|YP_003405485.1| - 0.057 13.8 0.8 0.081 13.3 0.8 1.2 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR Minor_capsid_3 PF12691.7 gi|284167209|ref|YP_003405487.1| - 0.012 16.0 0.0 0.02 15.3 0.0 1.4 1 1 0 1 1 1 0 Minor capsid protein from bacteriophage MaoC_dehydratas PF01575.19 gi|284167210|ref|YP_003405488.1| - 6.2e-18 64.5 0.0 7.5e-18 64.3 0.0 1.0 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284167210|ref|YP_003405488.1| - 3.5e-07 30.4 0.1 9.7e-07 29.0 0.1 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Metallophos PF00149.28 gi|284167211|ref|YP_003405489.1| - 1.5e-11 45.2 0.3 1.4e-10 42.0 0.3 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|284167211|ref|YP_003405489.1| - 4.4e-06 27.0 0.5 0.00022 21.5 0.5 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|284167211|ref|YP_003405489.1| - 0.024 13.9 0.0 0.084 12.2 0.0 1.8 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily AAA_31 PF13614.6 gi|284167212|ref|YP_003405490.1| - 5.4e-19 68.8 0.0 7.9e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284167212|ref|YP_003405490.1| - 4.2e-11 43.0 0.0 5.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|284167212|ref|YP_003405490.1| - 3.9e-07 29.8 0.2 1.8e-06 27.6 0.0 2.0 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|284167212|ref|YP_003405490.1| - 0.00023 20.6 0.1 0.12 11.6 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|284167212|ref|YP_003405490.1| - 0.0003 20.1 0.1 0.00093 18.5 0.1 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|284167212|ref|YP_003405490.1| - 0.00081 18.9 0.2 0.0031 17.0 0.2 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|284167212|ref|YP_003405490.1| - 0.0018 17.8 0.0 0.0056 16.2 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|284167212|ref|YP_003405490.1| - 0.11 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF2543 PF10820.8 gi|284167213|ref|YP_003405491.1| - 0.24 11.6 0.0 0.24 11.6 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2543) Presenilin PF01080.17 gi|284167213|ref|YP_003405491.1| - 8.5 5.0 5.4 8.8 5.0 5.4 1.1 1 0 0 1 1 1 0 Presenilin DUF2834 PF11196.8 gi|284167214|ref|YP_003405492.1| - 0.054 13.8 0.1 0.063 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2834) PAS_4 PF08448.10 gi|284167215|ref|YP_003405493.1| - 4.7e-50 168.4 19.5 2e-17 63.5 0.4 4.9 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|284167215|ref|YP_003405493.1| - 3.7e-39 133.2 0.1 1.1e-15 57.7 0.0 4.9 5 1 0 5 5 5 4 PAS domain PAS PF00989.25 gi|284167215|ref|YP_003405493.1| - 3.7e-31 107.5 0.6 2.5e-09 37.1 0.0 5.3 4 1 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|284167215|ref|YP_003405493.1| - 2e-29 102.4 0.1 5e-28 97.9 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|284167215|ref|YP_003405493.1| - 1.3e-20 73.0 0.3 0.00052 20.0 0.0 5.1 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|284167215|ref|YP_003405493.1| - 1.2e-12 48.0 0.5 0.00017 21.8 0.1 5.0 4 0 0 4 4 4 3 PAS fold HisKA PF00512.25 gi|284167215|ref|YP_003405493.1| - 2.7e-10 40.1 0.2 1.4e-09 37.8 0.2 2.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|284167215|ref|YP_003405493.1| - 1.5e-06 28.8 0.1 0.15 12.7 0.0 3.1 3 0 0 3 3 2 2 PAS domain PAS_7 PF12860.7 gi|284167215|ref|YP_003405493.1| - 1.7e-05 24.9 0.6 6.7 6.9 0.1 5.7 5 3 0 5 5 5 1 PAS fold HATPase_c_5 PF14501.6 gi|284167215|ref|YP_003405493.1| - 0.00087 19.2 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284167215|ref|YP_003405493.1| - 0.0093 15.9 0.1 0.068 13.1 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SAWADEE PF16719.5 gi|284167215|ref|YP_003405493.1| - 0.15 12.0 0.5 0.32 11.0 0.5 1.5 1 0 0 1 1 1 0 SAWADEE domain HATPase_c_3 PF13589.6 gi|284167215|ref|YP_003405493.1| - 0.16 11.8 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ZapB PF06005.12 gi|284167215|ref|YP_003405493.1| - 3.3 8.2 13.4 2.6 8.6 0.6 4.1 3 0 0 3 3 3 0 Cell division protein ZapB Hexapep PF00132.24 gi|284167217|ref|YP_003405495.1| - 4.5e-13 48.3 10.0 1.2e-07 31.1 2.3 2.5 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|284167217|ref|YP_003405495.1| - 7.1e-08 32.8 0.0 1.3e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|284167217|ref|YP_003405495.1| - 0.00015 21.4 1.6 0.00015 21.4 1.6 2.8 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase Fic_N PF13784.6 gi|284167218|ref|YP_003405496.1| - 9.8e-20 70.4 0.0 1.7e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Fic/DOC family N-terminal Fic PF02661.18 gi|284167218|ref|YP_003405496.1| - 1.3e-18 67.6 0.0 4e-18 66.1 0.0 1.9 1 0 0 1 1 1 1 Fic/DOC family HTH_11 PF08279.12 gi|284167218|ref|YP_003405496.1| - 0.00041 20.2 0.0 0.00094 19.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|284167218|ref|YP_003405496.1| - 0.00058 19.7 0.1 0.0028 17.5 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4172 PF13776.6 gi|284167218|ref|YP_003405496.1| - 0.012 15.9 0.0 0.076 13.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) HTH_20 PF12840.7 gi|284167218|ref|YP_003405496.1| - 0.059 13.5 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|284167218|ref|YP_003405496.1| - 0.082 12.6 0.0 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|284167218|ref|YP_003405496.1| - 0.14 12.4 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Tfb5 PF06331.12 gi|284167220|ref|YP_003405498.1| - 0.057 13.4 0.1 0.093 12.7 0.1 1.3 1 0 0 1 1 1 0 Transcription factor TFIIH complex subunit Tfb5 VIT1 PF01988.19 gi|284167223|ref|YP_003405501.1| - 0.69 9.8 0.1 0.69 9.8 0.1 1.7 2 0 0 2 2 2 0 VIT family RRN3 PF05327.11 gi|284167223|ref|YP_003405501.1| - 2.9 6.3 6.8 3.5 6.0 6.8 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Presenilin PF01080.17 gi|284167223|ref|YP_003405501.1| - 3.1 6.5 7.0 3.1 6.5 7.0 1.0 1 0 0 1 1 1 0 Presenilin HTH_20 PF12840.7 gi|284167224|ref|YP_003405502.1| - 3.1e-07 30.4 0.1 5.4e-07 29.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|284167224|ref|YP_003405502.1| - 2e-06 27.9 0.0 3.8e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284167224|ref|YP_003405502.1| - 3.4e-05 23.7 0.0 6.1e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2513 PF10711.9 gi|284167224|ref|YP_003405502.1| - 0.00012 22.3 0.2 0.0027 18.0 0.0 2.1 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_IclR PF09339.10 gi|284167224|ref|YP_003405502.1| - 0.00068 19.4 0.1 0.0023 17.7 0.1 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284167224|ref|YP_003405502.1| - 0.00083 18.9 0.0 0.00083 18.9 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Trimer_CC PF08954.11 gi|284167224|ref|YP_003405502.1| - 0.0009 18.7 0.8 0.0009 18.7 0.8 2.0 2 0 0 2 2 2 1 Trimerisation motif HTH_27 PF13463.6 gi|284167224|ref|YP_003405502.1| - 0.0024 18.3 0.2 0.017 15.6 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain CLZ PF16526.5 gi|284167224|ref|YP_003405502.1| - 0.0059 16.9 0.5 0.013 15.9 0.5 1.5 1 0 0 1 1 1 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PadR PF03551.14 gi|284167224|ref|YP_003405502.1| - 0.0077 16.2 0.0 0.023 14.6 0.0 1.9 2 1 0 2 2 2 1 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.12 gi|284167224|ref|YP_003405502.1| - 0.016 15.3 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Phasin PF05597.11 gi|284167224|ref|YP_003405502.1| - 0.025 14.6 0.1 6.9 6.7 0.0 2.2 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) XhlA PF10779.9 gi|284167224|ref|YP_003405502.1| - 0.025 14.8 0.5 0.058 13.6 0.5 1.6 1 0 0 1 1 1 0 Haemolysin XhlA HTH_5 PF01022.20 gi|284167224|ref|YP_003405502.1| - 0.026 14.4 0.0 0.065 13.1 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|284167224|ref|YP_003405502.1| - 0.027 14.4 0.2 0.11 12.4 0.0 2.2 2 1 0 2 2 2 0 MarR family Tropomyosin_1 PF12718.7 gi|284167224|ref|YP_003405502.1| - 0.031 14.4 1.4 5.8 7.1 0.2 2.1 2 0 0 2 2 2 0 Tropomyosin like Cep57_MT_bd PF06657.13 gi|284167224|ref|YP_003405502.1| - 0.032 14.7 1.1 0.08 13.4 1.1 1.7 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 HTH_45 PF14947.6 gi|284167224|ref|YP_003405502.1| - 0.072 13.1 0.0 0.45 10.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix SMC_ScpB PF04079.16 gi|284167224|ref|YP_003405502.1| - 0.092 12.4 0.1 0.25 10.9 0.0 1.7 2 1 0 2 2 2 0 Segregation and condensation complex subunit ScpB CorA PF01544.18 gi|284167224|ref|YP_003405502.1| - 0.1 11.9 0.7 0.11 11.8 0.7 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein TrmB PF01978.19 gi|284167224|ref|YP_003405502.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|284167226|ref|YP_003405504.1| - 8.7e-06 25.6 0.9 2.8e-05 24.0 0.3 2.1 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.6 gi|284167226|ref|YP_003405504.1| - 9.8e-06 25.0 1.3 6.1e-05 22.5 0.2 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|284167226|ref|YP_003405504.1| - 0.00022 20.9 1.4 0.0049 16.6 0.7 2.9 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.21 gi|284167226|ref|YP_003405504.1| - 0.00038 20.0 2.6 0.00074 19.1 0.2 2.8 5 0 0 5 5 5 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|284167226|ref|YP_003405504.1| - 0.0052 16.7 0.2 0.039 13.9 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|284167226|ref|YP_003405504.1| - 0.0073 16.3 0.6 0.38 10.8 0.2 2.9 3 0 0 3 3 2 1 Winged helix-turn helix MarR_2 PF12802.7 gi|284167226|ref|YP_003405504.1| - 0.0083 16.0 2.8 0.0097 15.8 0.2 2.5 3 0 0 3 3 3 1 MarR family MerR PF00376.23 gi|284167226|ref|YP_003405504.1| - 0.015 15.0 0.3 0.041 13.7 0.3 1.7 1 0 0 1 1 1 0 MerR family regulatory protein HTH_3 PF01381.22 gi|284167226|ref|YP_003405504.1| - 0.02 14.9 0.3 0.4 10.8 0.2 2.4 2 0 0 2 2 2 0 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|284167226|ref|YP_003405504.1| - 0.054 13.3 4.0 0.14 12.0 1.7 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284167226|ref|YP_003405504.1| - 0.083 12.4 0.6 1 8.9 0.2 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_31 PF13560.6 gi|284167226|ref|YP_003405504.1| - 0.083 13.2 0.2 0.083 13.2 0.2 3.7 4 0 0 4 4 4 0 Helix-turn-helix domain GlcNAc_2-epim PF07221.11 gi|284167227|ref|YP_003405505.1| - 4.8e-76 256.3 1.5 5.6e-76 256.0 1.5 1.0 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) C5-epim_C PF06662.13 gi|284167227|ref|YP_003405505.1| - 0.13 11.7 0.3 0.23 10.9 0.3 1.3 1 0 0 1 1 1 0 D-glucuronyl C5-epimerase C-terminus Aldo_ket_red PF00248.21 gi|284167228|ref|YP_003405506.1| - 1.5e-57 195.0 0.1 2.6e-55 187.7 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Response_reg PF00072.24 gi|284167229|ref|YP_003405507.1| - 1.9e-13 50.6 0.0 2.3e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TrmB PF01978.19 gi|284167230|ref|YP_003405508.1| - 1.9e-16 59.7 0.0 2.6e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|284167230|ref|YP_003405508.1| - 1.9e-05 25.0 0.1 2.5e-05 24.6 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|284167230|ref|YP_003405508.1| - 0.0001 22.0 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284167230|ref|YP_003405508.1| - 0.00016 21.5 0.3 0.00034 20.5 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_11 PF08279.12 gi|284167230|ref|YP_003405508.1| - 0.00053 19.9 0.0 0.00091 19.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|284167230|ref|YP_003405508.1| - 0.0024 17.4 0.0 0.0039 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UMPH-1 PF05822.12 gi|284167230|ref|YP_003405508.1| - 0.0097 15.4 0.1 0.013 15.0 0.1 1.3 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_20 PF12840.7 gi|284167230|ref|YP_003405508.1| - 0.015 15.4 0.0 0.027 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 2OG-Fe_Oxy_2 PF10014.9 gi|284167230|ref|YP_003405508.1| - 0.024 14.5 0.3 0.03 14.1 0.3 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase RuvB_C PF05491.13 gi|284167230|ref|YP_003405508.1| - 0.024 14.5 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_23 PF13384.6 gi|284167230|ref|YP_003405508.1| - 0.032 14.0 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.6 gi|284167230|ref|YP_003405508.1| - 0.036 14.6 0.0 0.055 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284167230|ref|YP_003405508.1| - 0.051 13.5 0.0 0.086 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Rio2_N PF09202.11 gi|284167230|ref|YP_003405508.1| - 0.053 13.7 0.2 0.19 12.0 0.2 1.8 1 1 0 1 1 1 0 Rio2, N-terminal HTH_28 PF13518.6 gi|284167230|ref|YP_003405508.1| - 0.08 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|284167230|ref|YP_003405508.1| - 0.16 12.3 0.0 0.5 10.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PqqD PF05402.12 gi|284167230|ref|YP_003405508.1| - 0.18 12.1 2.2 73 3.8 0.1 3.2 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) PEP_hydrolase PF09370.10 gi|284167231|ref|YP_003405509.1| - 1.5e-129 430.9 0.1 1.7e-129 430.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like AcylCoA_dehyd_C PF12186.8 gi|284167231|ref|YP_003405509.1| - 0.063 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase C terminal Cupin_2 PF07883.11 gi|284167232|ref|YP_003405510.1| - 2.9e-19 68.6 1.2 4.3e-19 68.0 1.2 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|284167232|ref|YP_003405510.1| - 7.6e-09 35.3 0.0 9.7e-09 35.0 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|284167232|ref|YP_003405510.1| - 5.5e-08 32.4 0.3 9.7e-08 31.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|284167232|ref|YP_003405510.1| - 1.6e-07 31.3 0.0 2.2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|284167232|ref|YP_003405510.1| - 6.5e-05 22.8 0.1 9.8e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.18 gi|284167232|ref|YP_003405510.1| - 0.00016 21.6 0.0 0.0002 21.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.8 gi|284167232|ref|YP_003405510.1| - 0.00041 20.5 0.0 0.00061 20.0 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Pirin_C PF05726.13 gi|284167232|ref|YP_003405510.1| - 0.017 15.5 0.0 0.023 15.0 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain DMSP_lyase PF16867.5 gi|284167232|ref|YP_003405510.1| - 0.037 13.7 0.0 0.048 13.3 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_6 PF12852.7 gi|284167232|ref|YP_003405510.1| - 0.038 13.7 0.1 0.046 13.5 0.1 1.3 1 0 0 1 1 1 0 Cupin ARD PF03079.14 gi|284167232|ref|YP_003405510.1| - 0.062 13.5 0.1 0.092 12.9 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family EutQ PF06249.12 gi|284167232|ref|YP_003405510.1| - 0.23 11.2 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ UPF0261 PF06792.11 gi|284167233|ref|YP_003405511.1| - 1.2e-172 574.5 3.2 1.3e-172 574.3 3.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0261) Peripla_BP_4 PF13407.6 gi|284167233|ref|YP_003405511.1| - 0.014 14.9 0.3 0.084 12.4 0.1 2.1 2 0 0 2 2 2 0 Periplasmic binding protein domain DUF2815 PF10991.8 gi|284167235|ref|YP_003405513.1| - 0.069 13.1 0.1 0.3 11.0 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2815) SDF PF00375.18 gi|284167238|ref|YP_003405516.1| - 1.4e-112 376.6 37.0 1.6e-112 376.4 37.0 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF3375 PF11855.8 gi|284167239|ref|YP_003405517.1| - 0.14 11.1 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) Methyltransf_25 PF13649.6 gi|284167240|ref|YP_003405518.1| - 3.7e-15 56.4 0.0 5e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284167240|ref|YP_003405518.1| - 3.7e-10 40.3 0.1 4.9e-10 39.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284167240|ref|YP_003405518.1| - 3.9e-10 39.7 0.0 5.2e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284167240|ref|YP_003405518.1| - 1.5e-07 31.4 0.0 2e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167240|ref|YP_003405518.1| - 8e-06 26.5 0.0 1.1e-05 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284167240|ref|YP_003405518.1| - 0.00013 21.5 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|284167240|ref|YP_003405518.1| - 0.00013 21.4 0.0 0.00018 21.0 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|284167240|ref|YP_003405518.1| - 0.00029 20.6 0.0 0.00051 19.8 0.0 1.5 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|284167240|ref|YP_003405518.1| - 0.0005 19.7 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) PCMT PF01135.19 gi|284167240|ref|YP_003405518.1| - 0.003 17.4 0.0 0.0042 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|284167240|ref|YP_003405518.1| - 0.004 17.1 0.0 0.036 14.0 0.0 2.3 2 1 1 3 3 3 1 Methyltransferase domain PrmA PF06325.13 gi|284167240|ref|YP_003405518.1| - 0.0085 15.5 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Linocin_M18 PF04454.12 gi|284167240|ref|YP_003405518.1| - 0.015 14.6 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 Encapsulating protein for peroxidase Ubie_methyltran PF01209.18 gi|284167240|ref|YP_003405518.1| - 0.017 14.4 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_10 PF05971.12 gi|284167240|ref|YP_003405518.1| - 0.031 13.6 0.0 0.036 13.4 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase Pterin_bind PF00809.22 gi|284167240|ref|YP_003405518.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Pterin binding enzyme Abhydrolase_6 PF12697.7 gi|284167241|ref|YP_003405519.1| - 5.7e-19 69.6 7.3 6.8e-19 69.3 7.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284167241|ref|YP_003405519.1| - 1.4e-15 57.6 0.0 3e-13 50.0 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284167241|ref|YP_003405519.1| - 3.6e-09 36.2 0.0 2.1e-08 33.8 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 gi|284167241|ref|YP_003405519.1| - 0.0017 18.2 0.0 0.62 9.9 0.0 2.2 2 0 0 2 2 2 2 Serine hydrolase Thioesterase PF00975.20 gi|284167241|ref|YP_003405519.1| - 0.014 15.5 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Methyltransf_25 PF13649.6 gi|284167242|ref|YP_003405520.1| - 2.4e-19 69.8 0.1 7.6e-19 68.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284167242|ref|YP_003405520.1| - 7.8e-19 68.1 0.0 1.8e-18 67.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284167242|ref|YP_003405520.1| - 9.3e-19 67.7 0.0 2.3e-18 66.4 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|284167242|ref|YP_003405520.1| - 2.3e-17 63.2 0.0 3.7e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284167242|ref|YP_003405520.1| - 6e-11 42.5 0.0 8.4e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167242|ref|YP_003405520.1| - 3e-10 40.7 0.0 1.8e-09 38.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.14 gi|284167242|ref|YP_003405520.1| - 5.4e-05 22.7 0.0 7.4e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|284167242|ref|YP_003405520.1| - 8.7e-05 21.9 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|284167242|ref|YP_003405520.1| - 0.0002 21.2 0.0 0.00031 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|284167242|ref|YP_003405520.1| - 0.00068 19.1 0.0 0.00098 18.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.16 gi|284167242|ref|YP_003405520.1| - 0.001 18.9 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 gi|284167242|ref|YP_003405520.1| - 0.0012 18.6 0.1 0.0055 16.4 0.1 2.0 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|284167242|ref|YP_003405520.1| - 0.01 15.5 0.1 0.018 14.7 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MTS PF05175.14 gi|284167242|ref|YP_003405520.1| - 0.03 13.9 0.1 0.053 13.1 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DREV PF05219.12 gi|284167242|ref|YP_003405520.1| - 0.031 13.4 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_4 PF02390.17 gi|284167242|ref|YP_003405520.1| - 0.04 13.4 0.0 0.084 12.3 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase ADH_zinc_N PF00107.26 gi|284167242|ref|YP_003405520.1| - 0.094 12.7 0.2 0.4 10.7 0.1 2.2 2 1 0 2 2 2 0 Zinc-binding dehydrogenase RrnaAD PF00398.20 gi|284167242|ref|YP_003405520.1| - 0.12 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|284167242|ref|YP_003405520.1| - 0.16 11.0 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase MarR_2 PF12802.7 gi|284167243|ref|YP_003405521.1| - 0.015 15.2 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|284167243|ref|YP_003405521.1| - 0.024 14.4 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284167243|ref|YP_003405521.1| - 0.025 14.5 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Abhydrolase_6 PF12697.7 gi|284167244|ref|YP_003405522.1| - 1.7e-18 68.1 0.2 2.2e-18 67.6 0.2 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284167244|ref|YP_003405522.1| - 1.4e-15 57.7 0.0 8.4e-14 51.8 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284167244|ref|YP_003405522.1| - 8.4e-13 48.1 0.0 1.6e-12 47.2 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|284167244|ref|YP_003405522.1| - 0.0029 17.7 0.0 0.0035 17.5 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_6 PF12697.7 gi|284167245|ref|YP_003405523.1| - 1.9e-23 84.2 0.1 2.3e-23 84.0 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284167245|ref|YP_003405523.1| - 8.5e-22 78.0 0.0 6e-21 75.2 0.0 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284167245|ref|YP_003405523.1| - 3.8e-13 49.3 0.0 1.4e-09 37.6 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|284167245|ref|YP_003405523.1| - 0.059 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Abhydrolase_2 PF02230.16 gi|284167245|ref|YP_003405523.1| - 0.088 12.6 0.7 3.2 7.5 0.0 2.7 2 1 1 3 3 3 0 Phospholipase/Carboxylesterase DUF915 PF06028.11 gi|284167245|ref|YP_003405523.1| - 0.24 10.7 0.0 0.57 9.5 0.0 1.6 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF915) HTH_Crp_2 PF13545.6 gi|284167246|ref|YP_003405524.1| - 7e-06 25.9 0.0 1.6e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|284167246|ref|YP_003405524.1| - 1.7e-05 24.6 0.0 3.5e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF1724 PF08350.10 gi|284167246|ref|YP_003405524.1| - 2.5e-05 24.3 0.0 4.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_24 PF13412.6 gi|284167246|ref|YP_003405524.1| - 0.00036 20.0 0.0 0.00058 19.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|284167246|ref|YP_003405524.1| - 0.00042 20.1 0.0 0.00075 19.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284167246|ref|YP_003405524.1| - 0.0054 16.5 0.0 0.0099 15.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284167246|ref|YP_003405524.1| - 0.0066 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|284167246|ref|YP_003405524.1| - 0.01 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|284167246|ref|YP_003405524.1| - 0.015 15.4 0.1 0.031 14.4 0.1 1.5 1 0 0 1 1 1 0 Trp repressor protein HTH_28 PF13518.6 gi|284167246|ref|YP_003405524.1| - 0.019 15.1 0.3 0.074 13.2 0.0 2.1 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|284167246|ref|YP_003405524.1| - 0.02 15.0 0.0 0.035 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GntR PF00392.21 gi|284167246|ref|YP_003405524.1| - 0.048 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|284167246|ref|YP_003405524.1| - 0.048 13.9 0.1 4.6 7.5 0.1 2.9 3 0 0 3 3 3 0 PaaX-like protein HTH_29 PF13551.6 gi|284167246|ref|YP_003405524.1| - 0.065 13.3 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_45 PF14947.6 gi|284167246|ref|YP_003405524.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix LacI PF00356.21 gi|284167246|ref|YP_003405524.1| - 0.15 11.8 0.1 0.31 10.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family ArsR PF09824.9 gi|284167246|ref|YP_003405524.1| - 0.16 11.5 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_AsnC-type PF13404.6 gi|284167246|ref|YP_003405524.1| - 0.17 11.8 0.1 0.3 10.9 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|284167246|ref|YP_003405524.1| - 0.17 11.7 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF1330 PF07045.11 gi|284167247|ref|YP_003405525.1| - 2.2e-18 66.4 0.0 2.9e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1330) TAT_signal PF10518.9 gi|284167247|ref|YP_003405525.1| - 0.0048 16.7 5.0 0.0076 16.1 5.0 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|284167249|ref|YP_003405527.1| - 2.6e-19 69.5 0.0 3.7e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|284167249|ref|YP_003405527.1| - 3.9e-06 26.9 0.6 5.6e-05 23.2 0.6 2.0 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|284167249|ref|YP_003405527.1| - 0.016 15.0 0.6 0.026 14.4 0.6 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.22 gi|284167250|ref|YP_003405528.1| - 4.1e-05 23.0 25.6 9.5e-05 21.8 13.4 2.5 1 1 1 2 2 2 2 ZIP Zinc transporter Cu-oxidase_3 PF07732.15 gi|284167251|ref|YP_003405529.1| - 9.3e-22 77.3 1.0 1.6e-21 76.5 0.1 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|284167251|ref|YP_003405529.1| - 7.3e-14 51.7 3.2 6.4e-07 29.2 0.2 3.2 3 0 0 3 3 3 3 Multicopper oxidase TAT_signal PF10518.9 gi|284167251|ref|YP_003405529.1| - 0.059 13.2 2.4 0.087 12.7 2.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AMP-binding PF00501.28 gi|284167252|ref|YP_003405530.1| - 1.9e-97 326.5 0.1 2.2e-97 326.3 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167252|ref|YP_003405530.1| - 1.4e-20 74.0 0.1 3.8e-20 72.6 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_11 PF08279.12 gi|284167253|ref|YP_003405531.1| - 1.2e-05 25.2 0.1 1.9e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|284167253|ref|YP_003405531.1| - 1.9e-05 24.1 0.1 2.9e-05 23.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|284167253|ref|YP_003405531.1| - 4e-05 23.3 0.1 8.7e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|284167253|ref|YP_003405531.1| - 9.6e-05 22.0 0.1 0.00016 21.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MerR PF00376.23 gi|284167253|ref|YP_003405531.1| - 0.00094 18.9 0.2 0.0031 17.3 0.2 1.9 1 1 0 1 1 1 1 MerR family regulatory protein HTH_AsnC-type PF13404.6 gi|284167253|ref|YP_003405531.1| - 0.0011 18.8 0.7 0.0026 17.5 0.7 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_3 PF01381.22 gi|284167253|ref|YP_003405531.1| - 0.0031 17.5 0.0 0.006 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_36 PF13730.6 gi|284167253|ref|YP_003405531.1| - 0.0049 16.8 0.0 0.012 15.6 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284167253|ref|YP_003405531.1| - 0.0073 16.2 0.2 0.012 15.5 0.2 1.4 1 0 0 1 1 1 1 MarR family Phage_int_SAM_1 PF02899.17 gi|284167253|ref|YP_003405531.1| - 0.015 15.5 0.1 0.026 14.8 0.1 1.3 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain HTH_31 PF13560.6 gi|284167253|ref|YP_003405531.1| - 0.016 15.5 0.1 0.043 14.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|284167253|ref|YP_003405531.1| - 0.018 15.1 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_Crp_2 PF13545.6 gi|284167253|ref|YP_003405531.1| - 0.069 13.1 0.5 0.14 12.1 0.5 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Trp_repressor PF01371.19 gi|284167253|ref|YP_003405531.1| - 0.076 13.2 0.1 0.34 11.1 0.0 1.9 2 0 0 2 2 2 0 Trp repressor protein HTH_29 PF13551.6 gi|284167253|ref|YP_003405531.1| - 0.091 12.8 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|284167253|ref|YP_003405531.1| - 0.099 12.1 0.2 0.35 10.3 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 FaeA PF04703.12 gi|284167253|ref|YP_003405531.1| - 0.1 13.0 0.1 0.18 12.2 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_38 PF13936.6 gi|284167253|ref|YP_003405531.1| - 0.12 12.1 0.2 0.21 11.4 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|284167253|ref|YP_003405531.1| - 0.14 12.3 0.2 0.24 11.6 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|284167253|ref|YP_003405531.1| - 0.14 11.9 0.0 0.36 10.6 0.0 1.7 1 1 1 2 2 2 0 Sigma-70, region 4 Aldedh PF00171.22 gi|284167255|ref|YP_003405533.1| - 2.7e-164 547.0 0.0 3.1e-164 546.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DS PF01916.17 gi|284167255|ref|YP_003405533.1| - 0.16 11.2 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 Deoxyhypusine synthase Glyco_hydro_31 PF01055.26 gi|284167256|ref|YP_003405534.1| - 1e-138 463.3 6.5 1.3e-138 462.9 6.5 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|284167256|ref|YP_003405534.1| - 4.9e-18 65.2 0.6 2e-17 63.3 0.6 2.1 1 0 0 1 1 1 1 Galactose mutarotase-like DUF5110 PF17137.4 gi|284167256|ref|YP_003405534.1| - 2.9e-12 46.7 2.8 9e-12 45.1 2.8 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF5110) DUF4968 PF16338.5 gi|284167256|ref|YP_003405534.1| - 3.4e-12 46.5 0.1 1.2e-11 44.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4968) PIN_9 PF18477.1 gi|284167257|ref|YP_003405535.1| - 0.00049 20.4 0.1 0.00081 19.7 0.1 1.4 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|284167257|ref|YP_003405535.1| - 0.018 15.3 0.0 0.02 15.1 0.0 1.4 1 1 0 1 1 1 0 PIN domain PSK_trans_fac PF07704.11 gi|284167258|ref|YP_003405536.1| - 0.0021 18.8 3.5 0.0047 17.7 3.5 1.6 1 1 0 1 1 1 1 Rv0623-like transcription factor RHH_8 PF17723.1 gi|284167258|ref|YP_003405536.1| - 0.042 14.0 0.3 0.048 13.8 0.3 1.2 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family Pyr_redox_3 PF13738.6 gi|284167259|ref|YP_003405537.1| - 3.2e-31 108.7 0.0 1.5e-28 99.9 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|284167259|ref|YP_003405537.1| - 2.1e-14 53.4 0.0 4e-13 49.2 0.0 2.3 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 gi|284167259|ref|YP_003405537.1| - 2.3e-12 46.8 0.0 1.1e-09 37.9 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284167259|ref|YP_003405537.1| - 8.5e-08 32.2 4.0 6.5e-06 26.0 0.0 3.4 3 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284167259|ref|YP_003405537.1| - 2e-07 31.1 0.3 2.1e-06 27.9 0.0 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|284167259|ref|YP_003405537.1| - 2.9e-07 30.2 0.1 0.021 14.1 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase HI0933_like PF03486.14 gi|284167259|ref|YP_003405537.1| - 4.9e-06 25.5 0.1 0.072 11.8 0.0 2.9 3 0 0 3 3 3 2 HI0933-like protein FMO-like PF00743.19 gi|284167259|ref|YP_003405537.1| - 2.9e-05 22.7 0.0 0.00016 20.3 0.0 2.3 2 1 0 2 2 2 1 Flavin-binding monooxygenase-like Pyr_redox PF00070.27 gi|284167259|ref|YP_003405537.1| - 0.00073 20.1 0.1 1.9 9.1 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|284167259|ref|YP_003405537.1| - 0.00076 18.8 0.1 0.26 10.5 0.0 2.2 2 0 0 2 2 2 2 Thi4 family FAD_binding_2 PF00890.24 gi|284167259|ref|YP_003405537.1| - 0.0025 17.0 3.7 0.044 12.9 0.0 3.1 3 1 0 4 4 4 1 FAD binding domain NAD_binding_9 PF13454.6 gi|284167259|ref|YP_003405537.1| - 0.0034 17.4 3.3 0.28 11.2 0.2 3.5 3 1 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|284167259|ref|YP_003405537.1| - 0.019 14.2 0.1 1.6 7.9 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain Lycopene_cycl PF05834.12 gi|284167259|ref|YP_003405537.1| - 0.057 12.5 2.9 3.6 6.5 0.0 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein GIDA PF01134.22 gi|284167259|ref|YP_003405537.1| - 0.075 12.1 0.8 5.4 6.0 0.3 2.4 2 0 0 2 2 2 0 Glucose inhibited division protein A PPARgamma_N PF12577.8 gi|284167259|ref|YP_003405537.1| - 0.12 13.0 0.2 0.63 10.7 0.0 2.1 3 0 0 3 3 3 0 PPAR gamma N-terminal region HTH_20 PF12840.7 gi|284167260|ref|YP_003405538.1| - 3e-05 24.0 1.7 6.9e-05 22.8 1.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284167260|ref|YP_003405538.1| - 0.00014 21.8 0.1 0.00023 21.0 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|284167260|ref|YP_003405538.1| - 0.00035 20.1 0.0 0.0007 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|284167260|ref|YP_003405538.1| - 0.00038 20.2 0.7 0.0007 19.3 0.3 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284167260|ref|YP_003405538.1| - 0.0014 18.5 1.1 0.0031 17.5 1.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|284167260|ref|YP_003405538.1| - 0.0043 16.9 0.6 0.0098 15.8 0.6 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284167260|ref|YP_003405538.1| - 0.0078 15.9 0.8 0.014 15.2 0.8 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|284167260|ref|YP_003405538.1| - 0.074 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HU-DNA_bdg PF14848.6 gi|284167260|ref|YP_003405538.1| - 0.13 12.3 0.1 0.48 10.4 0.0 1.8 2 0 0 2 2 2 0 DNA-binding domain GntR PF00392.21 gi|284167260|ref|YP_003405538.1| - 0.14 11.9 0.7 0.49 10.1 0.3 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|284167260|ref|YP_003405538.1| - 0.14 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 MarR family FAD_binding_4 PF01565.23 gi|284167261|ref|YP_003405539.1| - 9.6e-35 119.3 5.3 3.9e-34 117.4 4.0 2.3 2 0 0 2 2 2 1 FAD binding domain SnoaL PF07366.12 gi|284167261|ref|YP_003405539.1| - 3.5e-15 55.9 0.0 1.3e-14 54.1 0.0 1.9 2 0 0 2 2 2 1 SnoaL-like polyketide cyclase SnoaL_2 PF12680.7 gi|284167261|ref|YP_003405539.1| - 3.3e-13 50.1 0.5 3.3e-13 50.1 0.5 2.9 3 1 0 3 3 3 1 SnoaL-like domain BBE PF08031.12 gi|284167261|ref|YP_003405539.1| - 8.8e-08 32.1 0.0 2.8e-07 30.5 0.0 2.0 1 0 0 1 1 1 1 Berberine and berberine like DUF4440 PF14534.6 gi|284167261|ref|YP_003405539.1| - 0.00011 22.5 0.2 0.00027 21.3 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|284167261|ref|YP_003405539.1| - 0.039 14.2 0.3 0.2 11.9 0.1 2.3 3 0 0 3 3 3 0 SnoaL-like domain NTF2 PF02136.20 gi|284167261|ref|YP_003405539.1| - 0.052 14.1 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain SBF PF01758.16 gi|284167262|ref|YP_003405540.1| - 1.1e-17 64.3 11.5 1.1e-17 64.3 11.5 2.3 1 1 1 2 2 2 1 Sodium Bile acid symporter family MscS_TM PF12794.7 gi|284167262|ref|YP_003405540.1| - 1.6 7.5 21.8 0.67 8.7 15.1 2.7 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 GST_N_3 PF13417.6 gi|284167263|ref|YP_003405541.1| - 2.7e-05 24.5 0.0 2.7e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|284167263|ref|YP_003405541.1| - 4.9e-05 23.5 0.0 4.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin Dpy19 PF10034.9 gi|284167263|ref|YP_003405541.1| - 0.011 14.0 0.0 0.011 13.9 0.0 1.0 1 0 0 1 1 1 0 Q-cell neuroblast polarisation GST_N PF02798.20 gi|284167263|ref|YP_003405541.1| - 0.082 13.3 0.0 0.087 13.2 0.0 1.0 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Rdx PF10262.9 gi|284167264|ref|YP_003405542.1| - 3.6e-15 55.9 0.0 3.9e-15 55.8 0.0 1.0 1 0 0 1 1 1 1 Rdx family DUF1440 PF07274.12 gi|284167265|ref|YP_003405543.1| - 0.0078 16.6 1.5 0.0094 16.3 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1440) YqhR PF11085.8 gi|284167265|ref|YP_003405543.1| - 0.036 14.0 1.2 0.066 13.1 1.3 1.4 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF2456 PF10445.9 gi|284167265|ref|YP_003405543.1| - 0.28 11.3 3.2 10 6.3 0.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2456) DoxX PF07681.12 gi|284167266|ref|YP_003405544.1| - 5.5e-12 46.1 6.8 5.5e-12 46.1 6.8 1.5 2 0 0 2 2 2 1 DoxX DoxX_2 PF13564.6 gi|284167266|ref|YP_003405544.1| - 0.00014 21.9 8.7 0.00022 21.3 8.7 1.3 1 1 0 1 1 1 1 DoxX-like family VKG_Carbox PF05090.14 gi|284167266|ref|YP_003405544.1| - 0.027 13.3 0.2 0.042 12.7 0.2 1.3 1 1 0 1 1 1 0 Vitamin K-dependent gamma-carboxylase HxlR PF01638.17 gi|284167267|ref|YP_003405545.1| - 4.7e-26 90.5 0.0 5.8e-26 90.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|284167267|ref|YP_003405545.1| - 0.00044 20.1 0.0 0.00078 19.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|284167267|ref|YP_003405545.1| - 0.036 14.0 0.0 0.093 12.7 0.0 1.6 2 0 0 2 2 2 0 MarR family TrmB PF01978.19 gi|284167267|ref|YP_003405545.1| - 0.18 11.7 0.0 0.26 11.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|284167267|ref|YP_003405545.1| - 0.21 11.6 0.0 0.32 11.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Na_Ca_ex PF01699.24 gi|284167269|ref|YP_003405547.1| - 5.1e-36 123.9 32.5 2.6e-18 66.4 9.5 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein GlpM PF06942.12 gi|284167269|ref|YP_003405547.1| - 0.2 12.1 0.3 0.2 12.1 0.3 2.7 3 0 0 3 3 3 0 GlpM protein Retrotran_gag_2 PF14223.6 gi|284167270|ref|YP_003405548.1| - 0.052 13.2 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type HpcH_HpaI PF03328.14 gi|284167271|ref|YP_003405549.1| - 3e-46 157.3 0.4 3.5e-46 157.1 0.4 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family ELFV_dehydrog PF00208.21 gi|284167273|ref|YP_003405551.1| - 1.7e-70 237.5 0.2 2.2e-70 237.1 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|284167273|ref|YP_003405551.1| - 1.5e-55 186.6 0.0 2.6e-55 185.8 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|284167273|ref|YP_003405551.1| - 0.00011 21.6 0.0 0.00022 20.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|284167273|ref|YP_003405551.1| - 0.058 10.9 0.1 0.084 10.3 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Na_H_antiporter PF03553.14 gi|284167274|ref|YP_003405552.1| - 6.1e-53 180.0 48.8 1.9e-51 175.1 25.0 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Lyase_aromatic PF00221.19 gi|284167275|ref|YP_003405553.1| - 8.4e-186 618.1 8.0 9.6e-186 618.0 8.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_1 PF01979.20 gi|284167276|ref|YP_003405554.1| - 3.5e-15 56.2 0.3 1.6e-13 50.7 0.3 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284167276|ref|YP_003405554.1| - 8.1e-13 48.6 11.1 2.4e-06 27.3 1.0 2.3 1 1 1 2 2 2 2 Amidohydrolase family TPP_enzyme_M PF00205.22 gi|284167276|ref|YP_003405554.1| - 0.021 14.6 0.0 0.84 9.4 0.0 2.7 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Arginase PF00491.21 gi|284167277|ref|YP_003405555.1| - 1.2e-57 195.5 0.4 1.4e-57 195.3 0.4 1.0 1 0 0 1 1 1 1 Arginase family GCH_III PF05165.12 gi|284167277|ref|YP_003405555.1| - 0.0017 17.7 0.1 0.0026 17.1 0.1 1.3 1 0 0 1 1 1 1 GTP cyclohydrolase III GARS_C PF02843.16 gi|284167277|ref|YP_003405555.1| - 0.066 13.5 0.1 0.28 11.5 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain Urocanase_C PF17392.2 gi|284167278|ref|YP_003405556.1| - 3.7e-88 294.1 0.2 5.7e-88 293.5 0.2 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|284167278|ref|YP_003405556.1| - 7.9e-84 280.5 0.0 1.1e-83 280.1 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|284167278|ref|YP_003405556.1| - 4.1e-56 188.1 0.0 7.6e-56 187.3 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain HTH_10 PF04967.12 gi|284167279|ref|YP_003405557.1| - 1.9e-16 59.6 0.0 3e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284167279|ref|YP_003405557.1| - 4.5e-07 29.5 0.1 0.00024 20.7 0.1 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284167279|ref|YP_003405557.1| - 3.2e-05 23.4 0.1 7.2e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|284167279|ref|YP_003405557.1| - 0.00016 21.7 0.2 0.0017 18.4 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|284167279|ref|YP_003405557.1| - 0.00032 20.2 0.0 0.0014 18.1 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|284167279|ref|YP_003405557.1| - 0.00066 19.4 0.0 0.0018 18.0 0.0 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|284167279|ref|YP_003405557.1| - 0.003 17.5 0.0 0.0071 16.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 gi|284167279|ref|YP_003405557.1| - 0.0085 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284167279|ref|YP_003405557.1| - 0.014 15.2 0.0 0.033 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284167279|ref|YP_003405557.1| - 0.028 14.5 0.2 0.2 11.8 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|284167279|ref|YP_003405557.1| - 0.035 14.0 0.0 0.08 12.8 0.0 1.6 2 0 0 2 2 2 0 ECF sigma factor TetR_N PF00440.23 gi|284167279|ref|YP_003405557.1| - 0.046 13.5 0.0 0.097 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_7 PF02796.15 gi|284167279|ref|YP_003405557.1| - 0.11 12.6 0.2 0.28 11.3 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|284167279|ref|YP_003405557.1| - 0.12 12.5 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|284167279|ref|YP_003405557.1| - 0.14 12.7 0.0 0.41 11.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sod_Fe_C PF02777.18 gi|284167280|ref|YP_003405558.1| - 1.9e-33 114.7 0.3 3.5e-33 113.8 0.3 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|284167280|ref|YP_003405558.1| - 1.1e-30 106.0 0.5 2.3e-30 104.9 0.5 1.6 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DDE_Tnp_IS240 PF13610.6 gi|284167282|ref|YP_003405560.1| - 1.2e-37 129.2 0.0 1.8e-37 128.7 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|284167282|ref|YP_003405560.1| - 6.5e-11 41.8 0.4 1.3e-10 40.9 0.4 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|284167282|ref|YP_003405560.1| - 0.00035 20.7 0.1 0.00062 20.0 0.1 1.6 1 1 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|284167282|ref|YP_003405560.1| - 0.025 14.8 0.1 0.046 13.9 0.1 1.4 1 0 0 1 1 1 0 Integrase core domain TetR_C_28 PF17937.1 gi|284167282|ref|YP_003405560.1| - 1.6 9.2 5.1 11 6.6 0.3 2.9 3 1 1 4 4 4 0 Tetracyclin repressor-like, C-terminal domain PAS_4 PF08448.10 gi|284167284|ref|YP_003405562.1| - 1.1e-47 160.9 24.7 6.7e-13 48.9 0.2 5.5 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|284167284|ref|YP_003405562.1| - 6.8e-40 135.5 1.5 1.7e-12 47.5 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS PF00989.25 gi|284167284|ref|YP_003405562.1| - 1.7e-34 118.2 5.1 3.9e-13 49.4 0.1 5.9 5 1 0 5 5 5 4 PAS fold PAS_3 PF08447.12 gi|284167284|ref|YP_003405562.1| - 1.3e-30 105.6 4.7 4.7e-12 46.0 0.0 6.7 6 0 0 6 6 6 5 PAS fold HATPase_c PF02518.26 gi|284167284|ref|YP_003405562.1| - 2.1e-29 102.3 0.0 4.1e-28 98.1 0.0 2.4 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|284167284|ref|YP_003405562.1| - 1.1e-21 76.4 10.1 1.8e-07 31.0 0.1 5.4 6 0 0 6 6 6 3 PAS domain HisKA PF00512.25 gi|284167284|ref|YP_003405562.1| - 4.8e-11 42.5 0.1 4.8e-11 42.5 0.1 3.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|284167284|ref|YP_003405562.1| - 5.6e-09 36.2 8.6 0.012 15.8 0.1 6.0 4 3 2 6 6 6 3 PAS fold HATPase_c_5 PF14501.6 gi|284167284|ref|YP_003405562.1| - 7.8e-06 25.7 0.0 2.3e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284167284|ref|YP_003405562.1| - 0.0042 17.0 0.7 0.1 12.5 0.1 2.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|284167284|ref|YP_003405562.1| - 0.012 15.5 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.6 gi|284167284|ref|YP_003405562.1| - 0.013 16.1 0.5 0.76 10.4 0.0 3.4 4 0 0 4 4 3 0 PAS domain Thioesterase PF00975.20 gi|284167284|ref|YP_003405562.1| - 0.16 12.0 0.1 0.46 10.6 0.1 1.7 1 0 0 1 1 1 0 Thioesterase domain PIN PF01850.21 gi|284167285|ref|YP_003405563.1| - 4.1e-11 43.4 0.0 5.2e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain VAPB_antitox PF02697.14 gi|284167286|ref|YP_003405564.1| - 9.3e-11 42.3 1.9 1.3e-10 41.9 1.9 1.2 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|284167286|ref|YP_003405564.1| - 0.0083 16.0 0.4 0.0083 16.0 0.4 2.6 2 1 1 3 3 3 1 Ribbon-helix-helix protein, copG family WXG100 PF06013.12 gi|284167286|ref|YP_003405564.1| - 0.01 16.1 0.0 0.012 15.9 0.0 1.1 1 0 0 1 1 1 0 Proteins of 100 residues with WXG PadR PF03551.14 gi|284167288|ref|YP_003405566.1| - 5.2e-12 45.6 0.3 6.1e-12 45.3 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284167288|ref|YP_003405566.1| - 0.0018 18.2 0.1 0.0024 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.12 gi|284167288|ref|YP_003405566.1| - 0.023 13.1 0.3 0.025 13.0 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4364 PF14277.6 gi|284167288|ref|YP_003405566.1| - 0.082 12.6 0.0 0.093 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|284167288|ref|YP_003405566.1| - 0.13 12.1 0.1 0.19 11.6 0.1 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Arginase PF00491.21 gi|284167289|ref|YP_003405567.1| - 1.4e-76 257.7 0.5 1.7e-76 257.4 0.5 1.0 1 0 0 1 1 1 1 Arginase family Aminotran_3 PF00202.21 gi|284167290|ref|YP_003405568.1| - 3.6e-120 401.4 0.0 4.4e-120 401.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|284167290|ref|YP_003405568.1| - 1.3e-06 27.8 0.0 2.1e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aldedh PF00171.22 gi|284167291|ref|YP_003405569.1| - 1.3e-137 459.1 0.0 1.5e-137 458.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family AsnC_trans_reg PF01037.21 gi|284167292|ref|YP_003405570.1| - 1e-09 38.2 0.2 1.6e-09 37.6 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|284167292|ref|YP_003405570.1| - 1.3e-05 24.7 0.0 4.4e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284167292|ref|YP_003405570.1| - 2e-05 24.6 0.1 4.9e-05 23.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284167292|ref|YP_003405570.1| - 4.4e-05 23.3 0.0 9.4e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284167292|ref|YP_003405570.1| - 5.2e-05 23.0 0.0 0.0001 22.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284167292|ref|YP_003405570.1| - 0.00072 19.4 0.0 0.0019 18.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GYD PF08734.11 gi|284167292|ref|YP_003405570.1| - 0.0023 17.8 0.1 0.0054 16.7 0.1 1.6 2 0 0 2 2 2 1 GYD domain HTH_AsnC-type PF13404.6 gi|284167292|ref|YP_003405570.1| - 0.0092 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DUF4840 PF16128.5 gi|284167292|ref|YP_003405570.1| - 0.071 13.2 0.3 0.14 12.2 0.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4840) OCD_Mu_crystall PF02423.15 gi|284167293|ref|YP_003405571.1| - 1.1e-95 320.2 2.5 1.3e-95 320.1 2.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family SOR_SNZ PF01680.17 gi|284167294|ref|YP_003405572.1| - 2.1e-102 341.2 8.8 2.7e-102 340.9 8.8 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|284167294|ref|YP_003405572.1| - 7.5e-10 38.5 7.7 1.2e-05 24.8 0.6 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|284167294|ref|YP_003405572.1| - 0.00024 20.3 0.7 0.18 10.9 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) IGPS PF00218.21 gi|284167294|ref|YP_003405572.1| - 0.009 15.2 0.1 0.29 10.3 0.0 2.5 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|284167294|ref|YP_003405572.1| - 0.013 15.1 0.2 4.5 6.8 0.0 2.2 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Aldedh PF00171.22 gi|284167295|ref|YP_003405573.1| - 5.8e-170 565.8 0.0 7.1e-170 565.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Aminotran_3 PF00202.21 gi|284167296|ref|YP_003405574.1| - 7.5e-92 308.1 0.0 9.1e-92 307.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|284167296|ref|YP_003405574.1| - 0.00012 21.5 0.0 0.00024 20.5 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|284167296|ref|YP_003405574.1| - 0.012 14.8 0.0 0.27 10.4 0.0 2.1 2 0 0 2 2 2 0 Aminotransferase class I and II Na_H_antiporter PF03553.14 gi|284167297|ref|YP_003405575.1| - 2.7e-61 207.5 25.5 2.7e-61 207.5 25.5 2.4 1 1 1 2 2 2 1 Na+/H+ antiporter family MT PF12777.7 gi|284167297|ref|YP_003405575.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor COX7a PF02238.15 gi|284167297|ref|YP_003405575.1| - 2.8 8.4 8.1 3.4 8.1 0.1 4.4 3 0 0 3 3 3 0 Cytochrome c oxidase subunit VII AFOR_C PF01314.18 gi|284167300|ref|YP_003405578.1| - 9.4e-76 255.3 0.0 1.4e-75 254.7 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284167300|ref|YP_003405578.1| - 1e-58 198.5 0.1 1.6e-58 197.9 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Multi_Drug_Res PF00893.19 gi|284167301|ref|YP_003405579.1| - 2.1e-27 95.6 5.1 2.7e-27 95.3 5.1 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|284167301|ref|YP_003405579.1| - 0.26 11.4 10.5 0.5 10.5 10.5 1.5 1 1 0 1 1 1 0 EamA-like transporter family HalOD1 PF18545.1 gi|284167304|ref|YP_003405582.1| - 2.2e-22 79.1 0.4 2.8e-22 78.8 0.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PadR PF03551.14 gi|284167305|ref|YP_003405583.1| - 2.7e-15 56.1 0.7 3.3e-15 55.8 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|284167305|ref|YP_003405583.1| - 0.0014 18.4 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|284167305|ref|YP_003405583.1| - 0.027 14.5 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|284167305|ref|YP_003405583.1| - 0.037 14.5 0.1 0.054 14.0 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HalOD1 PF18545.1 gi|284167306|ref|YP_003405584.1| - 5.1e-25 87.5 1.2 6.5e-25 87.2 1.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Mis14 PF08641.12 gi|284167307|ref|YP_003405585.1| - 0.036 14.4 0.2 0.051 13.9 0.2 1.3 1 0 0 1 1 1 0 Kinetochore protein Mis14 like HTH_20 PF12840.7 gi|284167309|ref|YP_003405587.1| - 0.006 16.6 0.1 0.062 13.4 0.1 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain BAT PF15915.5 gi|284167310|ref|YP_003405588.1| - 1.4e-43 148.5 11.6 3.1e-43 147.3 10.2 2.5 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|284167310|ref|YP_003405588.1| - 8.5e-27 93.6 6.3 3.3e-11 43.4 0.1 5.2 5 0 0 5 5 5 3 PAS fold GAF_2 PF13185.6 gi|284167310|ref|YP_003405588.1| - 6.3e-26 91.3 6.7 2.1e-15 57.3 0.3 4.0 4 0 0 4 4 4 2 GAF domain HTH_10 PF04967.12 gi|284167310|ref|YP_003405588.1| - 1.7e-17 62.9 0.0 3.2e-16 58.9 0.0 2.8 3 0 0 3 3 3 1 HTH DNA binding domain PAS_9 PF13426.7 gi|284167310|ref|YP_003405588.1| - 1.1e-13 51.3 0.0 0.00015 21.9 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|284167310|ref|YP_003405588.1| - 2.7e-12 46.8 2.8 9.9e-10 38.6 0.1 3.6 4 0 0 4 4 4 1 PAS fold GAF_3 PF13492.6 gi|284167310|ref|YP_003405588.1| - 4.6e-09 36.7 0.0 0.00013 22.4 0.0 2.7 2 0 0 2 2 2 2 GAF domain HTH_20 PF12840.7 gi|284167310|ref|YP_003405588.1| - 3.3e-08 33.5 0.0 2.5e-06 27.4 0.0 3.4 3 0 0 3 3 3 1 Helix-turn-helix domain GAF PF01590.26 gi|284167310|ref|YP_003405588.1| - 7.4e-08 33.1 0.1 1.3e-05 25.8 0.0 2.9 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|284167310|ref|YP_003405588.1| - 7.3e-05 22.7 0.0 0.033 14.2 0.0 2.9 2 0 0 2 2 2 1 PAS fold HTH_11 PF08279.12 gi|284167310|ref|YP_003405588.1| - 0.00039 20.3 0.0 0.0012 18.8 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|284167310|ref|YP_003405588.1| - 0.0055 16.5 0.0 0.035 13.9 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.20 gi|284167310|ref|YP_003405588.1| - 0.015 15.1 0.0 6.4 6.7 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|284167310|ref|YP_003405588.1| - 0.018 14.8 0.1 4.4 7.2 0.0 3.4 3 0 0 3 3 3 0 LexA DNA binding domain PAS_8 PF13188.7 gi|284167310|ref|YP_003405588.1| - 0.025 14.6 0.1 18 5.5 0.0 3.2 2 0 0 2 2 2 0 PAS domain Sigma70_r4_2 PF08281.12 gi|284167310|ref|YP_003405588.1| - 0.027 14.1 0.2 1.1 9.0 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|284167310|ref|YP_003405588.1| - 0.032 13.8 0.0 5.7 6.6 0.0 3.4 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|284167310|ref|YP_003405588.1| - 0.045 13.6 0.0 0.27 11.2 0.0 2.3 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284167310|ref|YP_003405588.1| - 0.059 13.3 0.0 0.41 10.6 0.0 2.5 2 0 0 2 2 2 0 MarR family Sigma70_r4 PF04545.16 gi|284167310|ref|YP_003405588.1| - 0.079 12.5 0.1 3 7.4 0.0 3.4 4 0 0 4 4 4 0 Sigma-70, region 4 Mnd1 PF03962.15 gi|284167310|ref|YP_003405588.1| - 0.14 12.5 0.0 0.3 11.4 0.0 1.5 1 0 0 1 1 1 0 Mnd1 HTH domain DUF3470 PF11953.8 gi|284167311|ref|YP_003405589.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3470) HalOD1 PF18545.1 gi|284167312|ref|YP_003405590.1| - 5.7e-20 71.4 0.0 7.1e-20 71.1 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Glyco_hydro_32N PF00251.20 gi|284167313|ref|YP_003405591.1| - 1.8e-137 457.9 11.3 3.7e-73 246.8 4.9 2.4 2 0 0 2 2 2 2 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|284167313|ref|YP_003405591.1| - 6.5e-54 182.2 0.2 1.5e-25 90.0 0.3 3.0 3 0 0 3 3 3 2 Glycosyl hydrolases family 32 C terminal RicinB_lectin_2 PF14200.6 gi|284167313|ref|YP_003405591.1| - 3.5e-33 114.2 16.8 3.6e-19 69.3 4.9 3.4 2 0 0 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Laminin_G_3 PF13385.6 gi|284167313|ref|YP_003405591.1| - 7.9e-20 71.6 2.1 7.9e-20 71.6 2.1 3.7 3 1 2 5 5 5 1 Concanavalin A-like lectin/glucanases superfamily Ricin_B_lectin PF00652.22 gi|284167313|ref|YP_003405591.1| - 6.5e-13 49.0 6.3 2.4e-12 47.2 5.6 2.3 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain PfkB PF00294.24 gi|284167314|ref|YP_003405592.1| - 3.5e-60 203.9 0.0 4e-60 203.7 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Pribosyltran PF00156.27 gi|284167315|ref|YP_003405593.1| - 2e-20 72.9 0.1 2.7e-20 72.5 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|284167315|ref|YP_003405593.1| - 0.00081 19.1 0.0 0.004 16.9 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.15 gi|284167315|ref|YP_003405593.1| - 0.0012 18.8 0.0 0.016 15.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|284167315|ref|YP_003405593.1| - 0.01 15.3 0.1 0.021 14.3 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|284167315|ref|YP_003405593.1| - 0.014 15.0 0.1 0.034 13.7 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284167315|ref|YP_003405593.1| - 0.022 14.7 0.1 0.057 13.4 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_31 PF13560.6 gi|284167315|ref|YP_003405593.1| - 0.063 13.6 0.1 0.39 11.1 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain PRTase_2 PF15609.6 gi|284167315|ref|YP_003405593.1| - 0.066 12.7 0.2 0.38 10.2 0.2 1.9 1 1 0 1 1 1 0 Phosphoribosyl transferase HTH_Crp_2 PF13545.6 gi|284167315|ref|YP_003405593.1| - 0.092 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GerE PF00196.19 gi|284167315|ref|YP_003405593.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Hydrolase_3 PF08282.12 gi|284167316|ref|YP_003405594.1| - 4.2e-11 43.1 0.0 0.00022 21.1 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|284167316|ref|YP_003405594.1| - 2.7e-05 24.6 0.2 0.22 11.9 0.0 2.7 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284167316|ref|YP_003405594.1| - 0.055 13.8 0.3 0.75 10.0 0.0 2.5 2 2 1 3 3 3 0 haloacid dehalogenase-like hydrolase Glyco_hydro_32N PF00251.20 gi|284167317|ref|YP_003405595.1| - 3.5e-61 207.4 0.0 4.5e-61 207.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|284167317|ref|YP_003405595.1| - 4.1e-30 104.9 0.2 8.1e-30 103.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal Laminin_G_3 PF13385.6 gi|284167317|ref|YP_003405595.1| - 6.6e-24 84.8 0.0 3e-23 82.7 0.0 2.0 2 0 0 2 2 2 1 Concanavalin A-like lectin/glucanases superfamily Laminin_G_2 PF02210.24 gi|284167317|ref|YP_003405595.1| - 5.3e-05 23.8 0.0 0.0014 19.2 0.0 2.4 2 0 0 2 2 2 1 Laminin G domain DUF4975 PF16346.5 gi|284167317|ref|YP_003405595.1| - 0.2 11.7 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4975) Regulator_TrmB PF11495.8 gi|284167318|ref|YP_003405596.1| - 2.1e-24 86.0 0.0 3.4e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|284167318|ref|YP_003405596.1| - 2.5e-18 65.7 0.6 5.8e-18 64.5 0.2 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|284167318|ref|YP_003405596.1| - 6.4e-05 22.4 0.0 0.00018 21.0 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284167318|ref|YP_003405596.1| - 0.00029 20.7 0.1 0.01 15.7 0.0 2.4 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|284167318|ref|YP_003405596.1| - 0.023 15.0 0.0 0.062 13.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|284167318|ref|YP_003405596.1| - 0.029 14.2 0.1 0.099 12.5 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284167318|ref|YP_003405596.1| - 0.04 14.4 0.0 0.31 11.6 0.0 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_47 PF16221.5 gi|284167318|ref|YP_003405596.1| - 0.09 12.3 0.0 0.26 10.9 0.0 1.8 1 0 0 1 1 1 0 winged helix-turn-helix Saf_2TM PF18303.1 gi|284167319|ref|YP_003405597.1| - 0.011 15.3 0.4 0.014 15.0 0.4 1.1 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain ABC_tran PF00005.27 gi|284167320|ref|YP_003405598.1| - 7.9e-51 172.2 0.0 1.1e-26 94.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|284167320|ref|YP_003405598.1| - 5.5e-36 122.9 0.5 2.8e-19 69.4 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284167320|ref|YP_003405598.1| - 2.1e-13 50.7 6.5 6.3e-09 36.1 0.3 4.1 2 2 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284167320|ref|YP_003405598.1| - 5.2e-08 32.6 0.3 0.11 12.0 0.0 3.4 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284167320|ref|YP_003405598.1| - 6.4e-07 29.7 6.6 0.0076 16.5 0.2 4.0 2 2 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|284167320|ref|YP_003405598.1| - 7e-06 25.9 0.1 1.6 8.4 0.0 3.5 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_29 PF13555.6 gi|284167320|ref|YP_003405598.1| - 9.7e-06 25.2 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|284167320|ref|YP_003405598.1| - 1e-05 25.2 0.0 0.16 11.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|284167320|ref|YP_003405598.1| - 1e-05 26.0 0.1 0.065 13.6 0.1 2.6 2 1 0 2 2 2 2 AAA ATPase domain NACHT PF05729.12 gi|284167320|ref|YP_003405598.1| - 8e-05 22.6 0.4 0.46 10.4 0.0 2.6 2 0 0 2 2 2 2 NACHT domain NB-ARC PF00931.22 gi|284167320|ref|YP_003405598.1| - 0.00015 21.1 0.2 0.14 11.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain RsgA_GTPase PF03193.16 gi|284167320|ref|YP_003405598.1| - 0.00022 21.2 0.1 0.19 11.6 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase ATPase PF06745.13 gi|284167320|ref|YP_003405598.1| - 0.00047 19.6 0.1 0.55 9.5 0.1 2.6 2 0 0 2 2 2 2 KaiC MobB PF03205.14 gi|284167320|ref|YP_003405598.1| - 0.00055 19.8 0.0 1.4 8.8 0.0 2.4 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.16 gi|284167320|ref|YP_003405598.1| - 0.00057 19.4 0.0 0.68 9.3 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.22 gi|284167320|ref|YP_003405598.1| - 0.001 19.4 0.0 1 9.7 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_24 PF13479.6 gi|284167320|ref|YP_003405598.1| - 0.0014 18.3 0.0 1.1 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|284167320|ref|YP_003405598.1| - 0.0049 17.0 0.4 4.7 7.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain AFOR_N PF02730.15 gi|284167320|ref|YP_003405598.1| - 0.0073 16.2 0.0 0.22 11.4 0.0 2.2 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PRK PF00485.18 gi|284167320|ref|YP_003405598.1| - 0.013 15.3 0.1 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.26 gi|284167320|ref|YP_003405598.1| - 0.016 15.0 0.0 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.14 gi|284167320|ref|YP_003405598.1| - 0.016 15.2 0.7 8.2 6.4 0.3 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|284167320|ref|YP_003405598.1| - 0.016 15.7 0.0 1.4 9.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|284167320|ref|YP_003405598.1| - 0.021 15.0 0.3 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 Helicase HerA, central domain TsaE PF02367.17 gi|284167320|ref|YP_003405598.1| - 0.028 14.4 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|284167320|ref|YP_003405598.1| - 0.035 14.2 0.3 14 5.8 0.1 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase Roc PF08477.13 gi|284167320|ref|YP_003405598.1| - 0.035 14.3 0.1 5.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|284167320|ref|YP_003405598.1| - 0.053 13.0 0.1 9.2 5.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region TniB PF05621.11 gi|284167320|ref|YP_003405598.1| - 0.054 12.9 0.1 6.1 6.2 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein AAA_15 PF13175.6 gi|284167320|ref|YP_003405598.1| - 0.096 12.4 0.2 14 5.3 0.1 2.5 3 0 0 3 3 3 0 AAA ATPase domain AAA PF00004.29 gi|284167320|ref|YP_003405598.1| - 0.096 13.1 0.4 5.9 7.3 0.2 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Septin PF00735.18 gi|284167320|ref|YP_003405598.1| - 0.12 11.6 0.0 22 4.2 0.0 2.8 3 0 0 3 3 3 0 Septin Pox_A32 PF04665.12 gi|284167320|ref|YP_003405598.1| - 0.13 11.7 0.1 4.1 6.8 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein MeaB PF03308.16 gi|284167320|ref|YP_003405598.1| - 0.19 10.7 0.1 1.4 7.9 0.0 2.0 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SbcCD_C PF13558.6 gi|284167320|ref|YP_003405598.1| - 0.35 11.2 3.1 31 4.9 0.9 3.5 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|284167321|ref|YP_003405599.1| - 5e-22 78.5 10.3 5e-22 78.5 10.3 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284167322|ref|YP_003405600.1| - 3.9e-35 121.3 16.1 3.9e-35 121.3 16.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_32N PF00251.20 gi|284167323|ref|YP_003405601.1| - 3.1e-80 270.0 0.2 4e-80 269.6 0.2 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|284167323|ref|YP_003405601.1| - 2.1e-28 99.3 0.0 3.1e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF4960 PF16324.5 gi|284167323|ref|YP_003405601.1| - 5e-05 23.0 0.0 9.5e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4960) DUF4975 PF16346.5 gi|284167323|ref|YP_003405601.1| - 0.00041 20.5 0.0 0.00064 19.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4975) SBP_bac_5 PF00496.22 gi|284167324|ref|YP_003405602.1| - 2.1e-23 82.9 2.6 2.1e-23 82.9 2.6 1.7 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Glyco_hydro_68 PF02435.16 gi|284167326|ref|YP_003405604.1| - 1.8e-89 300.6 1.3 2e-45 155.4 1.1 3.0 1 1 1 2 2 2 2 Levansucrase/Invertase TAT_signal PF10518.9 gi|284167326|ref|YP_003405604.1| - 0.00065 19.4 2.3 0.0013 18.4 2.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Regulator_TrmB PF11495.8 gi|284167327|ref|YP_003405605.1| - 5.7e-47 159.9 0.0 7.7e-47 159.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|284167327|ref|YP_003405605.1| - 2.3e-09 37.0 0.0 5.7e-09 35.7 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284167327|ref|YP_003405605.1| - 0.0042 17.0 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 MarR family YflT PF11181.8 gi|284167327|ref|YP_003405605.1| - 0.033 14.7 0.1 0.15 12.6 0.0 2.2 2 1 0 2 2 2 0 Heat induced stress protein YflT Rrf2 PF02082.20 gi|284167327|ref|YP_003405605.1| - 0.043 14.2 0.0 0.098 13.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PLDc_2 PF13091.6 gi|284167327|ref|YP_003405605.1| - 0.045 13.6 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 PLD-like domain B-block_TFIIIC PF04182.12 gi|284167327|ref|YP_003405605.1| - 0.093 12.9 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Usp PF00582.26 gi|284167328|ref|YP_003405606.1| - 1.1e-21 77.8 1.1 1.4e-21 77.5 1.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Flu_PB1 PF00602.17 gi|284167328|ref|YP_003405606.1| - 0.16 10.1 0.1 0.19 9.8 0.1 1.0 1 0 0 1 1 1 0 Influenza RNA-dependent RNA polymerase subunit PB1 Sugar_tr PF00083.24 gi|284167329|ref|YP_003405607.1| - 9e-129 430.2 26.0 1e-128 430.0 26.0 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|284167329|ref|YP_003405607.1| - 7.1e-40 137.0 42.3 5.7e-37 127.4 39.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|284167329|ref|YP_003405607.1| - 1.4e-08 33.7 3.0 1.4e-08 33.7 3.0 2.1 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.6 gi|284167329|ref|YP_003405607.1| - 0.00061 18.5 4.1 0.00061 18.5 4.1 3.9 3 1 1 4 4 4 2 MFS/sugar transport protein TauE PF01925.19 gi|284167329|ref|YP_003405607.1| - 0.00086 19.0 9.8 0.00086 19.0 9.8 3.7 3 1 1 4 4 4 2 Sulfite exporter TauE/SafE MFS_3 PF05977.13 gi|284167329|ref|YP_003405607.1| - 0.0032 15.9 4.2 0.0032 15.9 4.2 2.3 2 1 0 2 2 2 1 Transmembrane secretion effector Gly-zipper_Omp PF13488.6 gi|284167329|ref|YP_003405607.1| - 0.009 16.0 1.4 0.009 16.0 1.4 2.6 2 0 0 2 2 2 1 Glycine zipper BT1 PF03092.16 gi|284167329|ref|YP_003405607.1| - 0.013 13.8 5.6 0.026 12.8 0.9 2.6 3 0 0 3 3 3 0 BT1 family OATP PF03137.20 gi|284167329|ref|YP_003405607.1| - 0.33 9.2 11.4 0.67 8.2 2.6 3.2 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|284167329|ref|YP_003405607.1| - 0.57 9.0 15.3 0.075 11.9 2.8 2.9 2 1 0 2 2 2 0 MFS_1 like family Lyase_aromatic PF00221.19 gi|284167330|ref|YP_003405608.1| - 2.7e-178 593.4 12.5 3.1e-178 593.2 12.5 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Amidohydro_1 PF01979.20 gi|284167331|ref|YP_003405609.1| - 2.3e-17 63.3 2.7 1.8e-15 57.1 2.7 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284167331|ref|YP_003405609.1| - 1.3e-14 54.6 20.7 9.9e-09 35.2 12.4 2.3 1 1 1 2 2 2 2 Amidohydrolase family Arginase PF00491.21 gi|284167332|ref|YP_003405610.1| - 1.4e-56 192.0 0.3 1.7e-56 191.8 0.3 1.0 1 0 0 1 1 1 1 Arginase family GCH_III PF05165.12 gi|284167332|ref|YP_003405610.1| - 0.13 11.5 0.0 0.59 9.3 0.0 2.0 2 0 0 2 2 2 0 GTP cyclohydrolase III Urocanase_C PF17392.2 gi|284167333|ref|YP_003405611.1| - 9.5e-85 283.0 3.1 9.8e-84 279.7 3.1 2.1 1 1 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|284167333|ref|YP_003405611.1| - 3.9e-81 271.7 0.1 5.7e-81 271.2 0.1 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|284167333|ref|YP_003405611.1| - 5e-58 194.3 0.0 1e-57 193.3 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain Osteopontin PF00865.18 gi|284167334|ref|YP_003405612.1| - 3.9 6.9 19.9 5.4 6.4 19.9 1.3 1 0 0 1 1 1 0 Osteopontin HTH_22 PF13309.6 gi|284167335|ref|YP_003405613.1| - 0.023 14.8 1.0 6.8 6.9 0.0 3.5 3 1 0 3 3 3 0 HTH domain BAT PF15915.5 gi|284167336|ref|YP_003405614.1| - 2.8e-42 144.2 12.4 7.1e-42 142.9 12.4 1.8 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|284167336|ref|YP_003405614.1| - 1.3e-26 93.6 3.7 2.7e-15 56.9 0.5 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|284167336|ref|YP_003405614.1| - 8.7e-20 70.3 0.0 4e-19 68.2 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain PAS_3 PF08447.12 gi|284167336|ref|YP_003405614.1| - 1.7e-16 60.3 0.0 5.3e-16 58.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|284167336|ref|YP_003405614.1| - 5.1e-10 40.1 1.4 2.5e-06 28.2 0.0 3.1 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.6 gi|284167336|ref|YP_003405614.1| - 9.6e-09 35.7 0.0 0.0011 19.3 0.0 2.6 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.7 gi|284167336|ref|YP_003405614.1| - 2.1e-08 34.4 0.1 1.1e-05 25.6 0.0 3.0 2 1 0 2 2 2 1 PAS domain HTH_20 PF12840.7 gi|284167336|ref|YP_003405614.1| - 1.1e-07 31.8 0.0 0.0097 16.0 0.0 2.7 2 0 0 2 2 2 2 Helix-turn-helix domain PAS_4 PF08448.10 gi|284167336|ref|YP_003405614.1| - 4e-07 30.3 0.5 0.0095 16.2 0.0 3.8 3 1 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|284167336|ref|YP_003405614.1| - 0.00011 22.2 0.2 0.0037 17.2 0.0 3.1 3 0 0 3 3 3 1 PAS domain HTH_11 PF08279.12 gi|284167336|ref|YP_003405614.1| - 0.0004 20.3 0.0 0.17 11.9 0.0 2.6 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|284167336|ref|YP_003405614.1| - 0.0022 17.8 0.0 0.24 11.2 0.0 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_5 PF01022.20 gi|284167336|ref|YP_003405614.1| - 0.0026 17.6 0.0 0.012 15.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284167336|ref|YP_003405614.1| - 0.0062 16.4 0.0 0.53 10.2 0.0 2.9 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|284167336|ref|YP_003405614.1| - 0.0074 15.8 0.0 0.026 14.1 0.0 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|284167336|ref|YP_003405614.1| - 0.0081 15.7 0.0 2.2 7.9 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family PilJ PF13675.6 gi|284167336|ref|YP_003405614.1| - 0.025 14.6 0.9 0.26 11.3 0.1 2.7 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term TrmB PF01978.19 gi|284167336|ref|YP_003405614.1| - 0.043 13.7 0.0 0.47 10.4 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.7 gi|284167336|ref|YP_003405614.1| - 0.056 13.6 0.0 0.72 10.1 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Homeodomain PF00046.29 gi|284167336|ref|YP_003405614.1| - 0.06 13.2 0.1 0.21 11.5 0.0 1.9 2 0 0 2 2 1 0 Homeodomain Sigma70_r4 PF04545.16 gi|284167336|ref|YP_003405614.1| - 0.064 12.8 0.2 1.1 8.9 0.3 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|284167336|ref|YP_003405614.1| - 0.083 12.7 0.0 2.6 7.9 0.0 2.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain Peptidase_M16 PF00675.20 gi|284167336|ref|YP_003405614.1| - 0.12 12.4 0.2 0.27 11.2 0.0 1.7 2 0 0 2 2 1 0 Insulinase (Peptidase family M16) Autoind_bind PF03472.15 gi|284167336|ref|YP_003405614.1| - 0.12 11.8 0.1 0.26 10.8 0.1 1.5 1 0 0 1 1 1 0 Autoinducer binding domain HTH_28 PF13518.6 gi|284167336|ref|YP_003405614.1| - 0.15 12.2 0.0 13 6.0 0.0 2.9 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|284167336|ref|YP_003405614.1| - 0.15 12.1 0.0 2.5 8.2 0.0 2.7 2 0 0 2 2 2 0 HTH domain Dimerisation2 PF16864.5 gi|284167336|ref|YP_003405614.1| - 0.19 11.7 0.0 0.7 9.9 0.0 2.1 2 0 0 2 2 1 0 Dimerisation domain HTH_20 PF12840.7 gi|284167337|ref|YP_003405615.1| - 0.055 13.5 0.2 0.27 11.3 0.2 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain GFO_IDH_MocA PF01408.22 gi|284167338|ref|YP_003405616.1| - 1.7e-25 90.1 0.1 2.8e-25 89.4 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284167338|ref|YP_003405616.1| - 2.4e-07 30.7 0.0 4.2e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|284167338|ref|YP_003405616.1| - 0.013 16.0 0.0 0.026 14.9 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Molybdopterin PF00384.22 gi|284167339|ref|YP_003405617.1| - 1.1e-63 215.7 0.0 1.4e-63 215.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284167339|ref|YP_003405617.1| - 2.2e-10 40.6 0.1 4.4e-10 39.6 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|284167339|ref|YP_003405617.1| - 0.016 15.2 3.5 0.071 13.1 3.5 2.0 1 1 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain TPP_enzyme_M PF00205.22 gi|284167339|ref|YP_003405617.1| - 0.029 14.1 0.1 2.5 7.8 0.0 2.7 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF1641 PF07849.11 gi|284167340|ref|YP_003405618.1| - 2e-06 27.5 0.1 5e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) FliG_N PF14842.6 gi|284167340|ref|YP_003405618.1| - 0.035 14.6 1.6 2.7 8.6 0.1 2.4 2 0 0 2 2 2 0 FliG N-terminal domain DUF4350 PF14258.6 gi|284167340|ref|YP_003405618.1| - 0.11 12.9 1.4 1.8 9.0 0.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4350) DED PF01335.21 gi|284167340|ref|YP_003405618.1| - 0.17 12.2 2.2 0.22 11.8 0.6 2.0 2 0 0 2 2 2 0 Death effector domain Molybdopterin PF00384.22 gi|284167341|ref|YP_003405619.1| - 1.3e-78 264.9 0.0 1.5e-78 264.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284167341|ref|YP_003405619.1| - 4.9e-32 110.2 0.0 1e-31 109.2 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|284167341|ref|YP_003405619.1| - 3.4e-12 46.1 0.1 6.5e-12 45.3 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|284167342|ref|YP_003405620.1| - 9e-22 76.9 1.7 9e-22 76.9 1.7 2.0 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|284167342|ref|YP_003405620.1| - 1.1e-13 50.5 1.0 1.1e-13 50.5 1.0 2.6 4 0 0 4 4 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_21 PF14697.6 gi|284167342|ref|YP_003405620.1| - 4.8e-10 39.4 8.5 4.8e-10 39.4 8.5 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284167342|ref|YP_003405620.1| - 9.4e-10 38.2 10.6 1.1e-05 25.2 1.1 3.8 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|284167342|ref|YP_003405620.1| - 1.3e-08 35.3 9.5 1.3e-08 35.3 9.5 2.9 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284167342|ref|YP_003405620.1| - 5.1e-08 32.9 21.7 1.6e-05 24.9 13.6 3.7 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284167342|ref|YP_003405620.1| - 1.3e-07 31.2 13.3 3.5e-05 23.4 1.7 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284167342|ref|YP_003405620.1| - 7.7e-07 29.2 10.0 7.7e-07 29.2 10.0 3.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|284167342|ref|YP_003405620.1| - 5.9e-06 26.9 6.9 0.0031 18.2 0.8 3.3 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|284167342|ref|YP_003405620.1| - 7.2e-06 26.4 8.7 7.2e-06 26.4 8.7 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284167342|ref|YP_003405620.1| - 1.8e-05 24.6 27.4 0.0015 18.5 4.5 4.1 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284167342|ref|YP_003405620.1| - 5.1e-05 23.4 13.6 0.00051 20.2 1.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284167342|ref|YP_003405620.1| - 0.00036 21.4 0.3 0.00036 21.4 0.3 3.3 3 1 1 4 4 2 1 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|284167342|ref|YP_003405620.1| - 0.041 14.7 0.7 0.041 14.7 0.7 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|284167342|ref|YP_003405620.1| - 0.13 12.8 20.3 0.22 12.1 3.7 3.0 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|284167342|ref|YP_003405620.1| - 0.61 10.7 23.2 0.36 11.4 14.0 3.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284167342|ref|YP_003405620.1| - 3.2 8.5 28.9 0.48 11.0 4.3 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain NADH_4Fe-4S PF10589.9 gi|284167343|ref|YP_003405621.1| - 8e-20 70.7 0.2 1.7e-19 69.6 0.2 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|284167343|ref|YP_003405621.1| - 3.8e-11 43.1 0.0 6.9e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit GFO_IDH_MocA PF01408.22 gi|284167346|ref|YP_003405624.1| - 5.2e-29 101.5 0.6 4.1e-28 98.6 0.2 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284167346|ref|YP_003405624.1| - 5.9e-08 32.7 0.0 1.1e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|284167346|ref|YP_003405624.1| - 0.00034 21.1 0.1 0.0011 19.6 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284167346|ref|YP_003405624.1| - 0.00048 20.3 0.2 0.0013 18.9 0.2 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_3 PF03447.16 gi|284167346|ref|YP_003405624.1| - 0.0014 19.3 0.3 0.0025 18.5 0.3 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284167346|ref|YP_003405624.1| - 0.0094 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|284167346|ref|YP_003405624.1| - 0.023 14.0 0.1 0.047 13.1 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|284167346|ref|YP_003405624.1| - 0.029 15.1 0.4 0.086 13.5 0.2 1.8 2 0 0 2 2 2 0 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|284167346|ref|YP_003405624.1| - 0.054 13.7 0.5 0.15 12.3 0.5 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Spc7 PF08317.11 gi|284167347|ref|YP_003405625.1| - 2.3e-08 33.3 71.8 0.0022 16.9 13.7 4.9 3 2 2 5 5 5 4 Spc7 kinetochore protein AAA_23 PF13476.6 gi|284167347|ref|YP_003405625.1| - 2.7e-07 31.3 63.8 5e-07 30.4 24.7 4.4 1 1 2 3 3 2 1 AAA domain AAA_13 PF13166.6 gi|284167347|ref|YP_003405625.1| - 5.6e-06 25.3 12.5 5.6e-06 25.3 12.5 3.1 2 1 1 3 3 3 3 AAA domain Atg14 PF10186.9 gi|284167347|ref|YP_003405625.1| - 3.5e-05 23.1 54.0 0.037 13.1 20.4 4.2 1 1 3 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 Seryl_tRNA_N PF02403.22 gi|284167347|ref|YP_003405625.1| - 9.4e-05 22.6 63.3 0.018 15.3 8.3 6.3 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain DUF4407 PF14362.6 gi|284167347|ref|YP_003405625.1| - 0.0001 21.8 49.9 0.14 11.5 11.8 3.6 1 1 2 3 3 3 3 Domain of unknown function (DUF4407) GAS PF13851.6 gi|284167347|ref|YP_003405625.1| - 0.00028 20.3 59.3 0.024 14.0 15.5 4.2 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding DHR10 PF18595.1 gi|284167347|ref|YP_003405625.1| - 0.002 18.2 15.0 0.002 18.2 15.0 6.2 2 2 3 5 5 5 1 Designed helical repeat protein 10 domain CENP-F_leu_zip PF10473.9 gi|284167347|ref|YP_003405625.1| - 0.0035 17.4 32.8 0.0035 17.4 32.8 6.0 2 2 3 5 5 5 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 T3SSipB PF16535.5 gi|284167347|ref|YP_003405625.1| - 0.0092 16.5 18.2 0.87 10.1 0.2 4.1 1 1 3 4 4 4 2 Type III cell invasion protein SipB TMF_TATA_bd PF12325.8 gi|284167347|ref|YP_003405625.1| - 0.012 15.8 12.2 0.012 15.8 12.2 6.3 2 2 4 6 6 6 0 TATA element modulatory factor 1 TATA binding DUF5082 PF16888.5 gi|284167347|ref|YP_003405625.1| - 0.015 15.6 54.2 1.6 9.0 1.0 7.1 2 2 4 6 6 6 0 Domain of unknown function (DUF5082) MAD PF05557.13 gi|284167347|ref|YP_003405625.1| - 0.029 12.8 57.6 0.049 12.0 25.8 2.2 2 0 0 2 2 2 0 Mitotic checkpoint protein IFT57 PF10498.9 gi|284167347|ref|YP_003405625.1| - 0.035 13.1 54.1 0.11 11.5 14.2 3.8 2 2 2 4 4 4 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|284167347|ref|YP_003405625.1| - 0.042 14.0 44.8 0.44 10.7 6.0 4.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family DivIC PF04977.15 gi|284167347|ref|YP_003405625.1| - 0.062 13.1 0.5 0.062 13.1 0.5 9.5 2 2 7 9 9 9 0 Septum formation initiator DUF1664 PF07889.12 gi|284167347|ref|YP_003405625.1| - 0.069 13.2 43.5 0.16 12.0 6.4 5.9 3 2 4 7 7 6 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|284167347|ref|YP_003405625.1| - 0.1 12.9 47.9 0.41 11.0 2.8 6.4 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HIP1_clath_bdg PF16515.5 gi|284167347|ref|YP_003405625.1| - 0.13 12.9 67.2 0.042 14.5 4.5 5.7 2 2 3 6 6 6 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TPR_MLP1_2 PF07926.12 gi|284167347|ref|YP_003405625.1| - 0.19 11.8 70.9 5.2 7.1 14.0 6.1 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein GIT_CC PF16559.5 gi|284167347|ref|YP_003405625.1| - 0.25 11.2 10.9 0.56 10.1 0.2 5.1 3 1 2 5 5 5 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF3584 PF12128.8 gi|284167347|ref|YP_003405625.1| - 0.27 8.7 67.8 0.17 9.3 27.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) MscS_porin PF12795.7 gi|284167347|ref|YP_003405625.1| - 0.33 10.4 67.2 0.11 12.0 22.1 4.0 2 2 3 5 5 5 0 Mechanosensitive ion channel porin domain Baculo_PEP_C PF04513.12 gi|284167347|ref|YP_003405625.1| - 0.43 10.6 25.2 8 6.5 1.0 5.0 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZapB PF06005.12 gi|284167347|ref|YP_003405625.1| - 0.53 10.8 83.5 0.1 13.0 0.7 8.2 3 2 5 8 8 7 0 Cell division protein ZapB APG6_N PF17675.1 gi|284167347|ref|YP_003405625.1| - 0.66 10.5 94.1 5.3 7.6 23.6 6.4 2 2 5 7 7 7 0 Apg6 coiled-coil region DUF4201 PF13870.6 gi|284167347|ref|YP_003405625.1| - 0.75 9.5 53.7 2 8.2 16.7 4.7 3 1 1 4 4 4 0 Domain of unknown function (DUF4201) FliD_N PF02465.18 gi|284167347|ref|YP_003405625.1| - 1.7 9.4 17.6 22 5.8 0.1 6.2 2 2 1 4 4 4 0 Flagellar hook-associated protein 2 N-terminus NPV_P10 PF05531.12 gi|284167347|ref|YP_003405625.1| - 1.9 9.0 34.7 3 8.4 0.5 6.7 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein Lectin_N PF03954.14 gi|284167347|ref|YP_003405625.1| - 2.7 7.8 20.2 2.3 8.0 0.3 4.9 4 2 1 5 5 4 0 Hepatic lectin, N-terminal domain ABC_tran_CTD PF16326.5 gi|284167347|ref|YP_003405625.1| - 2.7 8.3 85.8 1.7 9.0 2.1 9.0 2 2 5 7 7 7 0 ABC transporter C-terminal domain HemX PF04375.14 gi|284167347|ref|YP_003405625.1| - 4.8 6.4 38.6 0.8 8.9 3.5 4.6 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase FlaC_arch PF05377.11 gi|284167347|ref|YP_003405625.1| - 5.1 7.6 62.8 0.44 11.0 0.5 9.2 5 3 4 9 9 9 0 Flagella accessory protein C (FlaC) Golgin_A5 PF09787.9 gi|284167347|ref|YP_003405625.1| - 6.7 6.1 80.6 0.59 9.5 20.8 5.0 1 1 4 5 5 4 0 Golgin subfamily A member 5 Laminin_II PF06009.12 gi|284167347|ref|YP_003405625.1| - 7.5 6.6 40.5 2.4 8.2 10.2 5.8 2 2 4 6 6 6 0 Laminin Domain II ATG16 PF08614.11 gi|284167347|ref|YP_003405625.1| - 7.6 6.7 84.4 1.6 8.9 19.5 5.6 1 1 3 4 4 3 0 Autophagy protein 16 (ATG16) Exonuc_VII_L PF02601.15 gi|284167347|ref|YP_003405625.1| - 9.9 5.6 39.9 0.96 9.0 13.2 3.4 1 1 1 2 2 2 0 Exonuclease VII, large subunit adh_short_C2 PF13561.6 gi|284167348|ref|YP_003405626.1| - 3.1e-61 206.9 3.5 3.7e-61 206.7 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167348|ref|YP_003405626.1| - 7.8e-57 191.9 0.3 1e-56 191.5 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167348|ref|YP_003405626.1| - 1.4e-18 67.5 0.6 2.1e-18 66.9 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167348|ref|YP_003405626.1| - 0.0022 17.5 0.3 0.004 16.6 0.2 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF5403 PF17395.2 gi|284167348|ref|YP_003405626.1| - 0.028 14.7 0.2 0.063 13.6 0.2 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5403) ketoacyl-synt PF00109.26 gi|284167349|ref|YP_003405627.1| - 0.0079 15.8 0.0 0.0079 15.8 0.0 1.0 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain PP-binding PF00550.25 gi|284167350|ref|YP_003405628.1| - 0.029 14.7 0.1 0.035 14.4 0.1 1.1 1 0 0 1 1 1 0 Phosphopantetheine attachment site ADH_zinc_N PF00107.26 gi|284167351|ref|YP_003405629.1| - 3.8e-23 81.9 1.3 4.6e-23 81.6 0.3 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284167351|ref|YP_003405629.1| - 2.3e-16 61.1 0.0 4.9e-16 60.0 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|284167351|ref|YP_003405629.1| - 1.8e-09 37.4 0.0 1.4e-07 31.4 0.0 2.4 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|284167351|ref|YP_003405629.1| - 0.00016 21.2 1.0 0.00023 20.7 1.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|284167351|ref|YP_003405629.1| - 0.035 14.4 0.1 0.12 12.6 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain ADH_N_2 PF16884.5 gi|284167351|ref|YP_003405629.1| - 0.11 12.4 0.2 0.35 10.8 0.2 1.8 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase AlaDh_PNT_C PF01262.21 gi|284167351|ref|YP_003405629.1| - 0.23 10.8 6.5 0.18 11.1 3.1 2.0 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Ribonuc_red_sm PF00268.21 gi|284167352|ref|YP_003405630.1| - 1.5e-13 50.8 0.0 2.9e-13 49.9 0.0 1.4 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.8 gi|284167352|ref|YP_003405630.1| - 0.0013 18.0 0.3 0.0092 15.3 0.0 2.3 3 0 0 3 3 3 1 P-aminobenzoate N-oxygenase AurF MOZART1 PF12554.8 gi|284167352|ref|YP_003405630.1| - 0.14 11.9 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated Plant_all_beta PF10532.9 gi|284167353|ref|YP_003405631.1| - 0.022 15.1 0.9 0.057 13.7 0.8 1.7 1 1 1 2 2 2 0 Plant specific N-all beta domain PP-binding PF00550.25 gi|284167354|ref|YP_003405632.1| - 2.6e-11 43.7 0.8 3e-11 43.5 0.8 1.1 1 0 0 1 1 1 1 Phosphopantetheine attachment site Ribosomal_L50 PF10501.9 gi|284167354|ref|YP_003405632.1| - 0.022 14.9 0.0 0.022 14.9 0.0 1.3 1 1 0 1 1 1 0 Ribosomal subunit 39S ketoacyl-synt PF00109.26 gi|284167355|ref|YP_003405633.1| - 8.5e-53 179.5 5.8 1.2e-52 179.0 3.7 1.9 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|284167355|ref|YP_003405633.1| - 7.3e-32 109.9 0.8 1.5e-31 108.9 0.3 1.8 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.23 gi|284167355|ref|YP_003405633.1| - 1.8e-05 24.2 0.1 0.00029 20.3 0.0 2.3 2 0 0 2 2 2 1 Thiolase, N-terminal domain ACPS PF01648.20 gi|284167356|ref|YP_003405634.1| - 5.2e-15 55.6 0.0 6.9e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 4'-phosphopantetheinyl transferase superfamily Acyl_transf_1 PF00698.21 gi|284167357|ref|YP_003405635.1| - 5.9e-40 137.7 0.1 6.9e-40 137.5 0.1 1.0 1 0 0 1 1 1 1 Acyl transferase domain SAT PF16073.5 gi|284167357|ref|YP_003405635.1| - 0.019 14.7 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 Starter unit:ACP transacylase in aflatoxin biosynthesis IclR PF01614.18 gi|284167358|ref|YP_003405636.1| - 8.6e-27 93.5 0.0 2.6e-26 92.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167358|ref|YP_003405636.1| - 8.5e-10 38.3 0.4 2.1e-09 37.0 0.4 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284167358|ref|YP_003405636.1| - 8.4e-07 29.0 0.1 1.6e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284167358|ref|YP_003405636.1| - 1.4e-06 28.0 0.0 3e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|284167358|ref|YP_003405636.1| - 2e-06 27.6 0.1 3.7e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284167358|ref|YP_003405636.1| - 2.3e-06 27.1 0.0 4e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284167358|ref|YP_003405636.1| - 1.9e-05 24.5 0.0 6.7e-05 22.7 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|284167358|ref|YP_003405636.1| - 0.00014 22.0 0.1 0.00025 21.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|284167358|ref|YP_003405636.1| - 0.0026 18.2 0.1 0.0059 17.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|284167358|ref|YP_003405636.1| - 0.0097 15.8 0.1 0.023 14.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_10 PF04967.12 gi|284167358|ref|YP_003405636.1| - 0.013 15.3 0.1 0.028 14.2 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|284167358|ref|YP_003405636.1| - 0.031 14.3 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RepL PF05732.11 gi|284167358|ref|YP_003405636.1| - 0.035 13.5 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) B-block_TFIIIC PF04182.12 gi|284167358|ref|YP_003405636.1| - 0.036 14.2 0.0 0.07 13.3 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.6 gi|284167358|ref|YP_003405636.1| - 0.045 13.7 0.0 0.077 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1803 PF08820.10 gi|284167358|ref|YP_003405636.1| - 0.11 12.5 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) PALP PF00291.25 gi|284167359|ref|YP_003405637.1| - 1.1e-84 284.3 7.2 1.6e-84 283.8 7.2 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|284167359|ref|YP_003405637.1| - 3.9e-06 27.4 1.1 9.2e-06 26.2 0.1 2.1 3 0 0 3 3 3 1 ACT domain ACT PF01842.25 gi|284167359|ref|YP_003405637.1| - 0.00059 19.5 0.2 0.0018 18.0 0.2 1.9 1 0 0 1 1 1 1 ACT domain DUF3335 PF11814.8 gi|284167359|ref|YP_003405637.1| - 0.055 12.9 0.5 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Peptidase_C39 like family GCV_T PF01571.21 gi|284167360|ref|YP_003405638.1| - 1.2e-85 287.0 0.0 1.5e-85 286.7 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|284167360|ref|YP_003405638.1| - 2.4e-25 88.2 0.2 4.5e-25 87.4 0.2 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|284167360|ref|YP_003405638.1| - 0.0015 18.7 0.3 0.14 12.3 0.0 2.4 1 1 1 2 2 2 2 Sarcosine oxidase, gamma subunit family GCV_H PF01597.19 gi|284167361|ref|YP_003405639.1| - 9.1e-41 138.6 0.0 1e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|284167361|ref|YP_003405639.1| - 7.7e-05 22.4 0.3 0.00013 21.7 0.3 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|284167361|ref|YP_003405639.1| - 0.0058 16.6 0.0 0.0086 16.0 0.0 1.2 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain GDC-P PF02347.16 gi|284167362|ref|YP_003405640.1| - 9.5e-106 354.2 0.0 1.1e-105 354.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|284167362|ref|YP_003405640.1| - 0.00077 18.5 0.0 0.0021 17.1 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|284167362|ref|YP_003405640.1| - 0.0087 14.6 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme UreE_N PF02814.15 gi|284167362|ref|YP_003405640.1| - 0.037 13.6 1.3 2.6 7.7 0.1 2.4 2 0 0 2 2 2 0 UreE urease accessory protein, N-terminal domain ATP-grasp_4 PF13535.6 gi|284167362|ref|YP_003405640.1| - 0.053 13.1 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 ATP-grasp domain Aminotran_5 PF00266.19 gi|284167363|ref|YP_003405641.1| - 1e-09 37.9 0.2 2.3e-09 36.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V GDC-P PF02347.16 gi|284167363|ref|YP_003405641.1| - 5.1e-07 28.9 0.0 1.1e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Peptidase_S8 PF00082.22 gi|284167363|ref|YP_003405641.1| - 0.004 16.4 0.0 0.0064 15.8 0.0 1.2 1 0 0 1 1 1 1 Subtilase family DegT_DnrJ_EryC1 PF01041.17 gi|284167363|ref|YP_003405641.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|284167363|ref|YP_003405641.1| - 0.017 14.4 0.0 0.032 13.5 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase SHMT PF00464.19 gi|284167364|ref|YP_003405642.1| - 1.3e-159 531.2 0.2 1.5e-159 530.9 0.2 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|284167364|ref|YP_003405642.1| - 5.5e-08 32.4 0.0 1e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284167364|ref|YP_003405642.1| - 0.001 18.4 0.1 0.095 12.0 0.0 2.1 2 0 0 2 2 2 2 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|284167364|ref|YP_003405642.1| - 0.045 13.1 0.2 0.065 12.5 0.2 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.19 gi|284167364|ref|YP_003405642.1| - 0.074 13.1 0.1 4.7 7.3 0.0 2.8 2 0 0 2 2 2 0 B12 binding domain Ribonuc_L-PSP PF01042.21 gi|284167365|ref|YP_003405643.1| - 3.7e-40 136.7 0.0 4.1e-40 136.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Pyr_redox_2 PF07992.14 gi|284167366|ref|YP_003405644.1| - 1.5e-64 218.1 0.5 1.5e-64 218.1 0.5 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|284167366|ref|YP_003405644.1| - 4.7e-30 104.1 0.5 4.7e-30 104.1 0.5 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|284167366|ref|YP_003405644.1| - 2.3e-17 63.3 3.8 3.3e-14 53.2 0.0 3.6 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|284167366|ref|YP_003405644.1| - 2.7e-12 46.5 0.3 1.5e-08 34.2 0.1 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|284167366|ref|YP_003405644.1| - 5.3e-10 39.1 2.2 3.6e-06 26.5 0.3 2.5 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|284167366|ref|YP_003405644.1| - 4.1e-08 32.8 0.2 1.3e-06 27.9 0.2 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|284167366|ref|YP_003405644.1| - 3.7e-07 29.9 1.3 0.0011 18.6 0.2 2.5 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_2 PF00890.24 gi|284167366|ref|YP_003405644.1| - 1.2e-06 27.9 8.0 0.0023 17.1 1.1 3.7 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|284167366|ref|YP_003405644.1| - 1.4e-06 28.4 4.3 0.0012 19.0 0.6 2.9 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284167366|ref|YP_003405644.1| - 2e-05 23.5 2.1 0.0077 15.0 0.2 3.1 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|284167366|ref|YP_003405644.1| - 3.2e-05 23.7 15.0 0.015 14.9 2.9 3.8 3 1 0 4 4 4 3 FAD dependent oxidoreductase Thi4 PF01946.17 gi|284167366|ref|YP_003405644.1| - 3.8e-05 23.0 2.4 0.00054 19.3 0.1 2.5 3 0 0 3 3 3 1 Thi4 family Trp_halogenase PF04820.14 gi|284167366|ref|YP_003405644.1| - 0.00013 20.9 0.4 0.0013 17.7 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|284167366|ref|YP_003405644.1| - 0.00031 19.9 4.9 0.023 13.7 0.3 2.5 3 0 0 3 3 3 2 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|284167366|ref|YP_003405644.1| - 0.001 18.5 0.4 0.001 18.5 0.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|284167366|ref|YP_003405644.1| - 0.0016 18.3 1.9 0.022 14.7 0.0 2.7 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|284167366|ref|YP_003405644.1| - 0.002 18.6 0.3 2.7 8.5 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding XdhC_C PF13478.6 gi|284167366|ref|YP_003405644.1| - 0.0033 17.9 0.1 0.11 13.0 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain TrkA_N PF02254.18 gi|284167366|ref|YP_003405644.1| - 0.02 15.1 1.2 2.4 8.5 0.0 3.0 3 0 0 3 3 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|284167366|ref|YP_003405644.1| - 0.08 12.9 6.1 2.3 8.2 0.1 4.0 2 2 2 4 4 4 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|284167366|ref|YP_003405644.1| - 0.086 12.1 2.5 5.3 6.3 0.0 2.6 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|284167366|ref|YP_003405644.1| - 0.099 12.0 0.9 2 7.7 0.0 2.6 2 0 0 2 2 2 0 ThiF family DFRP_C PF16543.5 gi|284167366|ref|YP_003405644.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.5 1 0 0 1 1 1 0 DRG Family Regulatory Proteins, Tma46 Radical_SAM PF04055.21 gi|284167367|ref|YP_003405645.1| - 5.8e-12 46.3 0.1 1.5e-11 45.0 0.0 1.8 2 1 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|284167367|ref|YP_003405645.1| - 8.2e-09 35.9 0.1 1.5e-08 35.0 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|284167367|ref|YP_003405645.1| - 0.015 15.3 0.2 5.4 7.1 0.0 2.9 1 1 2 3 3 3 0 B12 binding domain UPF0126 PF03458.13 gi|284167368|ref|YP_003405646.1| - 3.7e-33 113.2 28.8 4.1e-17 61.8 12.0 2.7 2 1 1 3 3 3 2 UPF0126 domain FMN_dh PF01070.18 gi|284167369|ref|YP_003405647.1| - 1.4e-30 106.6 1.5 7.6e-21 74.5 1.4 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|284167369|ref|YP_003405647.1| - 7.7e-05 21.8 8.9 0.33 9.9 7.8 3.5 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|284167369|ref|YP_003405647.1| - 0.073 12.2 9.0 0.032 13.4 6.0 1.9 2 1 0 2 2 2 0 Conserved region in glutamate synthase DUF5058 PF16481.5 gi|284167370|ref|YP_003405648.1| - 1.2e-78 263.8 7.8 1.4e-78 263.6 7.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5058) DUF624 PF04854.14 gi|284167371|ref|YP_003405649.1| - 0.58 10.3 8.5 3.3 7.9 0.7 2.6 2 1 0 2 2 2 0 Protein of unknown function, DUF624 Peptidase_M20 PF01546.28 gi|284167372|ref|YP_003405650.1| - 3.9e-22 79.0 1.0 7.3e-22 78.1 1.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|284167372|ref|YP_003405650.1| - 1.3e-15 57.3 1.7 3.2e-15 56.0 1.7 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF2218 PF09981.9 gi|284167372|ref|YP_003405650.1| - 0.011 16.1 0.6 0.036 14.5 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) Glycos_transf_3 PF00591.21 gi|284167373|ref|YP_003405651.1| - 1e-91 307.0 5.5 1.3e-91 306.7 5.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|284167373|ref|YP_003405651.1| - 6.7e-14 51.5 2.9 7.9e-13 48.1 1.3 2.6 2 1 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|284167373|ref|YP_003405651.1| - 0.027 14.2 0.0 0.081 12.7 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) 4HBT_2 PF13279.6 gi|284167376|ref|YP_003405654.1| - 2e-29 102.6 0.0 8.9e-24 84.3 0.0 2.1 2 0 0 2 2 2 2 Thioesterase-like superfamily 4HBT PF03061.22 gi|284167376|ref|YP_003405654.1| - 2e-07 31.3 0.0 0.0011 19.3 0.0 2.5 2 0 0 2 2 2 2 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|284167376|ref|YP_003405654.1| - 4.6e-06 26.1 0.0 0.00018 20.9 0.0 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase 4HBT PF03061.22 gi|284167377|ref|YP_003405655.1| - 2e-13 50.5 1.0 3.4e-13 49.7 1.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|284167377|ref|YP_003405655.1| - 1.3e-10 41.5 0.1 1.8e-10 41.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|284167377|ref|YP_003405655.1| - 0.00011 22.6 0.4 0.00014 22.3 0.4 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Molybdopterin PF00384.22 gi|284167378|ref|YP_003405656.1| - 1.4e-85 287.9 0.0 1.7e-85 287.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284167378|ref|YP_003405656.1| - 4e-32 110.5 0.0 8.3e-32 109.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|284167378|ref|YP_003405656.1| - 5.7e-29 100.0 0.2 1.8e-28 98.4 0.2 1.9 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|284167378|ref|YP_003405656.1| - 1.8e-13 49.8 0.9 7.1e-13 47.9 0.9 2.1 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.7 gi|284167378|ref|YP_003405656.1| - 3e-12 46.9 2.1 4.2e-07 30.4 9.0 3.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Molybdop_Fe4S4 PF04879.16 gi|284167378|ref|YP_003405656.1| - 7.7e-10 38.6 0.1 3.1e-09 36.7 0.1 2.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 gi|284167378|ref|YP_003405656.1| - 1.3e-08 34.8 8.5 1.3e-08 34.8 8.5 2.9 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284167378|ref|YP_003405656.1| - 1.8e-06 27.5 22.2 4.6e-05 23.0 2.6 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284167378|ref|YP_003405656.1| - 9.3e-06 25.7 8.4 9.3e-06 25.7 8.4 3.9 2 1 3 5 5 4 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|284167378|ref|YP_003405656.1| - 2.7e-05 24.0 13.0 0.00056 19.9 2.3 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|284167378|ref|YP_003405656.1| - 9.7e-05 22.7 7.7 9.7e-05 22.7 7.7 3.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284167378|ref|YP_003405656.1| - 0.00045 20.3 12.3 0.00045 20.3 12.3 3.4 4 1 1 5 5 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284167378|ref|YP_003405656.1| - 0.0022 18.9 2.3 0.0022 18.9 2.3 3.7 4 0 0 4 4 3 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|284167378|ref|YP_003405656.1| - 0.025 14.8 1.4 0.025 14.8 1.4 3.0 2 1 1 3 3 2 0 4Fe-4S dicluster domain CDC48_N PF02359.18 gi|284167378|ref|YP_003405656.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_22 PF17179.4 gi|284167378|ref|YP_003405656.1| - 0.46 11.4 14.8 0.53 11.2 1.6 3.9 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|284167378|ref|YP_003405656.1| - 1.3 9.6 14.5 5.1 7.7 2.9 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NADH_4Fe-4S PF10589.9 gi|284167379|ref|YP_003405657.1| - 5.6e-17 61.6 0.0 9.7e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|284167379|ref|YP_003405657.1| - 4.3e-15 55.9 0.0 6.1e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.9 gi|284167379|ref|YP_003405657.1| - 0.035 14.0 0.0 0.097 12.6 0.0 1.8 1 0 0 1 1 1 0 SLBB domain KGG PF10685.9 gi|284167380|ref|YP_003405658.1| - 1.4 9.3 0.1 1.4 9.3 0.1 2.4 2 0 0 2 2 2 0 Stress-induced bacterial acidophilic repeat motif ECH_1 PF00378.20 gi|284167381|ref|YP_003405659.1| - 2.8e-51 174.3 0.0 3.1e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167381|ref|YP_003405659.1| - 4.5e-32 111.9 0.1 8.4e-32 111.0 0.1 1.3 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase MaoC_dehydratas PF01575.19 gi|284167382|ref|YP_003405660.1| - 4.6e-21 74.6 0.0 5.7e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284167382|ref|YP_003405660.1| - 1.4e-10 41.4 0.0 2e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.13 gi|284167382|ref|YP_003405660.1| - 0.047 13.3 0.0 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 FabA-like domain T3SS_needle_F PF09392.10 gi|284167383|ref|YP_003405661.1| - 0.1 12.8 0.1 0.43 10.8 0.0 2.0 2 0 0 2 2 2 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF UbiD PF01977.16 gi|284167384|ref|YP_003405662.1| - 1.5e-110 369.9 0.0 1.9e-110 369.5 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.16 gi|284167385|ref|YP_003405663.1| - 1e-41 143.2 0.0 1.2e-41 142.9 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HTH_29 PF13551.6 gi|284167385|ref|YP_003405663.1| - 0.14 12.2 0.2 13 5.9 0.1 2.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 gi|284167385|ref|YP_003405663.1| - 0.14 12.3 0.1 4.5 7.5 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Lactamase_B PF00753.27 gi|284167386|ref|YP_003405664.1| - 2.9e-16 60.0 8.6 3.9e-16 59.7 8.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284167386|ref|YP_003405664.1| - 0.018 14.6 0.7 0.018 14.6 0.7 2.0 2 1 1 3 3 3 0 Beta-lactamase superfamily domain ECH_1 PF00378.20 gi|284167387|ref|YP_003405665.1| - 1.3e-53 181.9 0.0 1.6e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167387|ref|YP_003405665.1| - 4.3e-23 82.4 0.0 3.3e-21 76.1 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase PaaA_PaaC PF05138.12 gi|284167388|ref|YP_003405666.1| - 1.5e-19 70.2 0.5 1.8e-19 69.9 0.5 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|284167388|ref|YP_003405666.1| - 0.068 12.9 0.0 0.26 11.0 0.0 1.8 2 0 0 2 2 2 0 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like PaaB PF06243.11 gi|284167389|ref|YP_003405667.1| - 0.00027 21.1 0.0 0.00033 20.8 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B FeS_assembly_P PF01883.19 gi|284167390|ref|YP_003405668.1| - 2.1e-14 53.4 0.2 3.8e-14 52.6 0.0 1.5 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|284167391|ref|YP_003405669.1| - 7.5e-61 205.6 0.4 1e-60 205.2 0.4 1.1 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein Haem_oxygenas_2 PF14518.6 gi|284167391|ref|YP_003405669.1| - 0.05 13.4 1.5 1.5 8.6 1.5 2.3 1 1 0 1 1 1 0 Iron-containing redox enzyme DUF455 PF04305.14 gi|284167391|ref|YP_003405669.1| - 0.077 12.5 0.6 0.2 11.2 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF455) Ald_deCOase PF11266.8 gi|284167391|ref|YP_003405669.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Long-chain fatty aldehyde decarbonylase VWA_CoxE PF05762.14 gi|284167391|ref|YP_003405669.1| - 0.14 11.5 0.0 5.5 6.3 0.0 2.1 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein Acetyltransf_1 PF00583.25 gi|284167392|ref|YP_003405670.1| - 1.9e-09 37.7 0.1 2.4e-09 37.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284167392|ref|YP_003405670.1| - 4.7e-09 36.2 0.1 1e-08 35.1 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284167392|ref|YP_003405670.1| - 1e-08 35.5 0.1 1.7e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284167392|ref|YP_003405670.1| - 0.029 14.3 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Fer2 PF00111.27 gi|284167393|ref|YP_003405671.1| - 1.3e-13 50.7 1.1 1.5e-13 50.4 1.1 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|284167393|ref|YP_003405671.1| - 0.015 15.4 0.4 0.044 13.8 0.4 1.9 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|284167393|ref|YP_003405671.1| - 0.05 13.6 0.1 0.051 13.6 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain AMP-binding PF00501.28 gi|284167394|ref|YP_003405672.1| - 2.8e-87 293.0 0.0 3.5e-87 292.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167394|ref|YP_003405672.1| - 1.8e-21 76.9 1.3 1.8e-21 76.9 1.3 3.1 3 1 0 3 3 3 1 AMP-binding enzyme C-terminal domain Toprim_4 PF13662.6 gi|284167394|ref|YP_003405672.1| - 0.042 14.3 0.1 1.4 9.5 0.0 2.5 2 0 0 2 2 2 0 Toprim domain MarR_2 PF12802.7 gi|284167395|ref|YP_003405673.1| - 9.2e-05 22.3 0.0 0.00013 21.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284167395|ref|YP_003405673.1| - 0.00041 19.9 0.0 0.00074 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF5081 PF16887.5 gi|284167395|ref|YP_003405673.1| - 0.00093 18.3 0.1 0.0011 18.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5081) HTH_40 PF14493.6 gi|284167395|ref|YP_003405673.1| - 0.0015 18.9 0.1 0.0021 18.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284167395|ref|YP_003405673.1| - 0.0028 17.4 0.3 0.0051 16.6 0.3 1.6 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|284167395|ref|YP_003405673.1| - 0.004 17.2 0.0 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_20 PF12840.7 gi|284167395|ref|YP_003405673.1| - 0.0049 16.9 0.5 0.0079 16.2 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|284167395|ref|YP_003405673.1| - 0.0083 16.1 0.0 0.036 14.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284167395|ref|YP_003405673.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284167395|ref|YP_003405673.1| - 0.023 14.7 0.1 0.041 13.8 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|284167395|ref|YP_003405673.1| - 0.03 14.5 0.0 0.062 13.4 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|284167395|ref|YP_003405673.1| - 0.037 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|284167395|ref|YP_003405673.1| - 0.05 13.3 0.0 0.094 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|284167395|ref|YP_003405673.1| - 0.061 13.3 0.2 0.1 12.6 0.2 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|284167395|ref|YP_003405673.1| - 0.064 12.9 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Replication protein C N-terminal domain TrmB PF01978.19 gi|284167395|ref|YP_003405673.1| - 0.09 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|284167395|ref|YP_003405673.1| - 0.12 12.7 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator CoA_trans PF01144.23 gi|284167396|ref|YP_003405674.1| - 3.6e-16 59.2 0.0 6.8e-16 58.3 0.0 1.4 1 1 0 1 1 1 1 Coenzyme A transferase CitF PF04223.12 gi|284167396|ref|YP_003405674.1| - 0.13 11.1 0.1 0.47 9.3 0.0 1.7 1 1 1 2 2 2 0 Citrate lyase, alpha subunit (CitF) CoA_trans PF01144.23 gi|284167397|ref|YP_003405675.1| - 3e-25 88.9 0.0 3.9e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase Mfp-3 PF04202.13 gi|284167397|ref|YP_003405675.1| - 0.092 13.2 1.7 0.12 12.7 0.4 1.9 2 0 0 2 2 2 0 Foot protein 3 Peripla_BP_6 PF13458.6 gi|284167398|ref|YP_003405676.1| - 6.7e-74 249.6 7.0 8.2e-74 249.3 7.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|284167398|ref|YP_003405676.1| - 1.7e-37 129.3 0.9 2.2e-37 128.9 0.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|284167398|ref|YP_003405676.1| - 2.4e-11 43.3 0.1 3.6e-11 42.8 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|284167398|ref|YP_003405676.1| - 4.8e-06 26.2 1.8 4.8e-06 26.2 1.8 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence LppC PF04348.13 gi|284167398|ref|YP_003405676.1| - 0.00033 19.6 0.0 0.00041 19.3 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein TraT PF05818.12 gi|284167398|ref|YP_003405676.1| - 0.31 10.7 3.6 0.51 10.0 0.8 2.1 2 0 0 2 2 2 0 Enterobacterial TraT complement resistance protein BPD_transp_2 PF02653.16 gi|284167399|ref|YP_003405677.1| - 5.4e-45 153.6 46.7 6.7e-45 153.3 46.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|284167400|ref|YP_003405678.1| - 2e-40 138.7 34.8 2.9e-40 138.1 34.8 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|284167401|ref|YP_003405679.1| - 3.4e-28 98.9 0.0 4.8e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284167401|ref|YP_003405679.1| - 3.7e-12 46.7 4.9 4.2e-07 30.1 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|284167401|ref|YP_003405679.1| - 2.1e-09 37.1 0.0 4.4e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|284167401|ref|YP_003405679.1| - 1.9e-05 24.2 0.4 0.00022 20.8 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|284167401|ref|YP_003405679.1| - 2.4e-05 25.0 2.6 3.9e-05 24.2 2.6 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284167401|ref|YP_003405679.1| - 0.0014 18.3 0.4 0.0028 17.3 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284167401|ref|YP_003405679.1| - 0.0015 18.5 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|284167401|ref|YP_003405679.1| - 0.0022 18.1 0.2 0.0071 16.4 0.1 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|284167401|ref|YP_003405679.1| - 0.0025 18.1 0.2 0.005 17.1 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|284167401|ref|YP_003405679.1| - 0.025 14.2 0.0 0.039 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|284167401|ref|YP_003405679.1| - 0.053 12.9 0.3 0.3 10.5 0.1 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_15 PF13175.6 gi|284167401|ref|YP_003405679.1| - 0.078 12.7 3.5 0.17 11.5 0.7 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|284167401|ref|YP_003405679.1| - 0.088 11.6 0.3 0.18 10.5 0.3 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class FeoB_N PF02421.18 gi|284167401|ref|YP_003405679.1| - 0.096 12.2 0.1 0.096 12.2 0.1 1.6 2 0 0 2 2 2 0 Ferrous iron transport protein B cobW PF02492.19 gi|284167401|ref|YP_003405679.1| - 0.13 11.8 1.3 0.14 11.7 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|284167401|ref|YP_003405679.1| - 0.13 12.4 0.1 0.71 10.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|284167401|ref|YP_003405679.1| - 0.14 11.9 1.2 0.35 10.5 1.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|284167401|ref|YP_003405679.1| - 0.17 12.1 0.1 0.36 11.1 0.1 1.6 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|284167401|ref|YP_003405679.1| - 0.25 8.8 0.3 0.34 8.4 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_tran PF00005.27 gi|284167402|ref|YP_003405680.1| - 1.3e-30 106.6 0.0 1.8e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284167402|ref|YP_003405680.1| - 2.6e-13 50.5 0.2 9.5e-07 28.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284167402|ref|YP_003405680.1| - 0.00013 21.4 0.2 0.21 11.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284167402|ref|YP_003405680.1| - 0.0016 18.7 0.3 0.008 16.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|284167402|ref|YP_003405680.1| - 0.0045 16.7 1.6 0.035 13.8 1.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|284167402|ref|YP_003405680.1| - 0.0048 17.4 0.0 0.0057 17.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284167402|ref|YP_003405680.1| - 0.016 15.6 0.5 0.038 14.4 0.4 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|284167402|ref|YP_003405680.1| - 0.018 14.7 0.1 0.036 13.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|284167402|ref|YP_003405680.1| - 0.02 14.2 0.1 0.076 12.3 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.6 gi|284167402|ref|YP_003405680.1| - 0.025 14.7 0.0 0.046 13.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284167402|ref|YP_003405680.1| - 0.057 13.1 0.0 0.11 12.1 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.6 gi|284167402|ref|YP_003405680.1| - 0.072 13.3 0.4 0.57 10.5 0.4 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|284167402|ref|YP_003405680.1| - 0.088 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|284167402|ref|YP_003405680.1| - 0.1 12.5 0.3 0.25 11.3 0.1 1.7 2 0 0 2 2 2 0 NACHT domain SRP54 PF00448.22 gi|284167402|ref|YP_003405680.1| - 0.13 11.8 0.5 0.22 11.1 0.5 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PRK PF00485.18 gi|284167402|ref|YP_003405680.1| - 0.14 11.9 0.1 19 4.9 0.1 2.3 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|284167402|ref|YP_003405680.1| - 0.18 11.0 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|284167402|ref|YP_003405680.1| - 0.18 11.8 0.0 0.38 10.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|284167402|ref|YP_003405680.1| - 0.2 11.8 0.1 0.47 10.6 0.1 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase ECH_1 PF00378.20 gi|284167403|ref|YP_003405681.1| - 7.8e-39 133.5 0.0 9.2e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167403|ref|YP_003405681.1| - 3.9e-17 62.8 0.0 3.1e-16 59.8 0.0 1.9 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 gi|284167404|ref|YP_003405682.1| - 2.5e-44 151.5 0.0 2.8e-44 151.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167404|ref|YP_003405682.1| - 3.3e-19 69.6 0.0 9.3e-17 61.5 0.0 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Usp PF00582.26 gi|284167405|ref|YP_003405683.1| - 4.3e-18 66.2 0.2 1.5e-17 64.5 0.2 1.6 1 1 0 1 1 1 1 Universal stress protein family HGTP_anticodon PF03129.20 gi|284167405|ref|YP_003405683.1| - 0.035 14.3 0.0 0.067 13.4 0.0 1.5 1 1 0 1 1 1 0 Anticodon binding domain Acetyltransf_3 PF13302.7 gi|284167406|ref|YP_003405684.1| - 7.6e-14 52.6 0.0 1e-13 52.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284167406|ref|YP_003405684.1| - 2.2e-13 50.5 0.0 3.1e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284167406|ref|YP_003405684.1| - 4.6e-13 49.2 0.0 6.6e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284167406|ref|YP_003405684.1| - 2.8e-10 40.5 0.0 4.2e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|284167406|ref|YP_003405684.1| - 4.3e-06 26.8 0.0 0.022 14.9 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284167406|ref|YP_003405684.1| - 1.1e-05 25.7 0.0 1.5e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284167406|ref|YP_003405684.1| - 1.8e-05 24.6 0.0 3.2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|284167406|ref|YP_003405684.1| - 0.0042 16.8 0.0 0.0078 15.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284167406|ref|YP_003405684.1| - 0.064 13.4 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.6 gi|284167406|ref|YP_003405684.1| - 0.17 11.2 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 ECH_1 PF00378.20 gi|284167407|ref|YP_003405685.1| - 8e-62 208.8 0.0 9e-62 208.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284167407|ref|YP_003405685.1| - 5.1e-34 118.3 0.1 8.2e-28 97.8 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|284167407|ref|YP_003405685.1| - 0.034 14.1 0.1 11 6.0 0.1 2.3 2 0 0 2 2 2 0 Peptidase family S49 3HCDH_N PF02737.18 gi|284167408|ref|YP_003405686.1| - 5.5e-63 212.1 3.1 7.3e-63 211.7 3.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|284167408|ref|YP_003405686.1| - 2.3e-31 108.3 0.1 1.3e-30 105.8 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|284167408|ref|YP_003405686.1| - 1.3e-07 31.8 0.1 3.1e-07 30.5 0.1 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|284167408|ref|YP_003405686.1| - 0.00013 21.6 0.4 0.00013 21.6 0.4 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|284167408|ref|YP_003405686.1| - 0.00036 20.7 4.4 0.00036 20.7 4.4 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|284167408|ref|YP_003405686.1| - 0.0012 19.3 5.7 0.0081 16.7 3.1 3.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|284167408|ref|YP_003405686.1| - 0.23 11.7 2.6 0.75 10.1 0.7 2.4 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain HTH_20 PF12840.7 gi|284167409|ref|YP_003405687.1| - 0.00022 21.2 0.2 0.00052 20.0 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284167410|ref|YP_003405688.1| - 0.00023 21.0 0.0 0.00028 20.7 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284167410|ref|YP_003405688.1| - 0.00033 20.5 0.0 0.00038 20.3 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|284167410|ref|YP_003405688.1| - 0.00054 19.7 0.6 0.00064 19.5 0.6 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|284167410|ref|YP_003405688.1| - 0.013 15.8 0.1 0.018 15.4 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|284167410|ref|YP_003405688.1| - 0.02 14.8 0.1 0.024 14.5 0.1 1.1 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|284167410|ref|YP_003405688.1| - 0.021 15.3 0.0 0.026 15.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|284167410|ref|YP_003405688.1| - 0.036 14.1 0.0 0.037 14.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Maf_N PF08383.11 gi|284167410|ref|YP_003405688.1| - 0.092 12.5 0.1 0.2 11.5 0.1 1.6 2 0 0 2 2 2 0 Maf N-terminal region OB_aCoA_assoc PF01796.17 gi|284167411|ref|YP_003405689.1| - 3.8e-07 30.0 4.7 1.4e-06 28.2 0.9 2.8 2 0 0 2 2 2 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|284167411|ref|YP_003405689.1| - 1.7e-06 27.8 4.8 3.7e-06 26.7 4.8 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|284167411|ref|YP_003405689.1| - 2.3 8.0 4.1 6.6 6.6 4.2 1.7 1 1 0 1 1 1 0 Rubredoxin metal binding domain Thiolase_N PF00108.23 gi|284167412|ref|YP_003405690.1| - 1.4e-19 70.5 0.0 8e-19 68.0 0.0 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284167412|ref|YP_003405690.1| - 9.2e-09 35.0 0.0 2.3e-08 33.7 0.0 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284167412|ref|YP_003405690.1| - 8.6e-08 32.1 1.2 1.1e-06 28.4 0.8 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|284167412|ref|YP_003405690.1| - 0.042 13.7 0.1 2.9 7.8 0.0 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_C36 PF05415.11 gi|284167412|ref|YP_003405690.1| - 0.045 14.0 0.0 0.097 12.9 0.0 1.5 1 0 0 1 1 1 0 Beet necrotic yellow vein furovirus-type papain-like endopeptidase Aldedh PF00171.22 gi|284167413|ref|YP_003405691.1| - 1.7e-183 610.4 0.0 1.9e-183 610.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family YCII PF03795.14 gi|284167413|ref|YP_003405691.1| - 0.01 16.2 0.3 0.057 13.8 0.0 2.3 2 1 0 2 2 2 0 YCII-related domain Acyl-CoA_dh_1 PF00441.24 gi|284167414|ref|YP_003405692.1| - 1.9e-43 148.2 2.3 3.8e-43 147.3 1.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284167414|ref|YP_003405692.1| - 6e-33 113.9 0.3 1.3e-32 112.8 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284167414|ref|YP_003405692.1| - 1.7e-21 76.9 0.2 3.7e-21 75.8 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284167414|ref|YP_003405692.1| - 1.3e-18 67.0 0.0 2.4e-18 66.1 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Amidohydro_2 PF04909.14 gi|284167415|ref|YP_003405693.1| - 9.5e-42 143.8 3.8 1.1e-41 143.5 3.8 1.1 1 0 0 1 1 1 1 Amidohydrolase HTH_10 PF04967.12 gi|284167416|ref|YP_003405694.1| - 2.2e-14 53.0 0.1 3.8e-14 52.2 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284167416|ref|YP_003405694.1| - 1.6e-05 24.8 0.0 2.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|284167416|ref|YP_003405694.1| - 0.031 14.2 0.1 0.055 13.4 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|284167416|ref|YP_003405694.1| - 0.036 13.9 0.0 0.071 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family IclR PF01614.18 gi|284167417|ref|YP_003405695.1| - 5.6e-35 120.0 0.0 8.6e-35 119.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167417|ref|YP_003405695.1| - 9.1e-12 44.6 0.0 3.1e-11 42.9 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284167417|ref|YP_003405695.1| - 4.6e-10 39.2 0.2 1.4e-09 37.7 0.1 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284167417|ref|YP_003405695.1| - 1.1e-09 37.7 0.2 3e-09 36.3 0.2 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284167417|ref|YP_003405695.1| - 3.9e-08 33.1 0.1 2.4e-07 30.6 0.0 2.3 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|284167417|ref|YP_003405695.1| - 2.7e-06 27.2 0.2 1.9e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|284167417|ref|YP_003405695.1| - 4.8e-06 26.2 0.4 1.3e-05 24.9 0.0 1.9 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|284167417|ref|YP_003405695.1| - 1.6e-05 24.7 0.0 9.7e-05 22.2 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|284167417|ref|YP_003405695.1| - 1.8e-05 24.5 0.1 0.00017 21.3 0.0 2.7 4 0 0 4 4 2 1 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|284167417|ref|YP_003405695.1| - 6.2e-05 22.7 0.2 0.012 15.3 0.0 3.6 3 1 1 4 4 4 1 LexA DNA binding domain HTH_Mga PF08280.11 gi|284167417|ref|YP_003405695.1| - 9.6e-05 22.3 0.0 0.00017 21.5 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.7 gi|284167417|ref|YP_003405695.1| - 0.0001 22.2 0.0 0.00037 20.5 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|284167417|ref|YP_003405695.1| - 0.00011 22.3 0.0 0.00021 21.4 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|284167417|ref|YP_003405695.1| - 0.00011 21.9 0.2 0.00089 19.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|284167417|ref|YP_003405695.1| - 0.00019 21.6 0.0 0.00068 19.8 0.0 2.0 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|284167417|ref|YP_003405695.1| - 0.00023 20.9 0.0 0.00072 19.3 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|284167417|ref|YP_003405695.1| - 0.0027 18.0 0.0 0.019 15.3 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_40 PF14493.6 gi|284167417|ref|YP_003405695.1| - 0.0061 17.0 1.0 0.016 15.6 0.0 2.2 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|284167417|ref|YP_003405695.1| - 0.008 16.3 0.0 0.037 14.2 0.0 2.2 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|284167417|ref|YP_003405695.1| - 0.0094 16.0 0.0 0.03 14.3 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 gi|284167417|ref|YP_003405695.1| - 0.0098 15.6 0.1 0.037 13.8 0.1 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.10 gi|284167417|ref|YP_003405695.1| - 0.014 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator GntR PF00392.21 gi|284167417|ref|YP_003405695.1| - 0.014 15.0 0.9 0.048 13.3 0.0 2.3 3 0 0 3 3 2 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|284167417|ref|YP_003405695.1| - 0.014 15.2 0.1 0.12 12.3 0.1 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_45 PF14947.6 gi|284167417|ref|YP_003405695.1| - 0.019 14.9 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_7 PF02796.15 gi|284167417|ref|YP_003405695.1| - 0.023 14.8 0.1 0.063 13.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|284167417|ref|YP_003405695.1| - 0.035 14.1 0.2 0.12 12.3 0.0 2.0 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain SpoIIID PF12116.8 gi|284167417|ref|YP_003405695.1| - 0.036 14.2 0.1 0.17 12.0 0.0 2.1 2 0 0 2 2 2 0 Stage III sporulation protein D Mga PF05043.13 gi|284167417|ref|YP_003405695.1| - 0.043 14.4 0.0 0.095 13.3 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain RP-C PF03428.13 gi|284167417|ref|YP_003405695.1| - 0.049 13.3 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|284167417|ref|YP_003405695.1| - 0.058 12.8 0.0 2.8 7.4 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_17 PF12728.7 gi|284167417|ref|YP_003405695.1| - 0.078 13.2 0.0 0.47 10.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284167417|ref|YP_003405695.1| - 0.11 12.1 0.3 2.5 7.7 0.0 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|284167417|ref|YP_003405695.1| - 0.11 12.6 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain EAP30 PF04157.16 gi|284167417|ref|YP_003405695.1| - 0.11 11.8 0.1 0.26 10.6 0.0 1.7 2 1 1 3 3 3 0 EAP30/Vps36 family HemN_C PF06969.16 gi|284167417|ref|YP_003405695.1| - 0.14 12.3 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 HemN C-terminal domain HTH_22 PF13309.6 gi|284167417|ref|YP_003405695.1| - 0.15 12.1 0.0 0.54 10.4 0.0 2.0 1 1 0 1 1 1 0 HTH domain HTH_9 PF08221.11 gi|284167417|ref|YP_003405695.1| - 0.16 12.1 0.1 0.57 10.3 0.0 1.9 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Lactonase PF10282.9 gi|284167418|ref|YP_003405696.1| - 2.2e-112 375.8 0.0 2.4e-112 375.6 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|284167418|ref|YP_003405696.1| - 7.5e-05 22.4 0.0 0.42 10.1 0.0 3.2 1 1 2 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region DUF1513 PF07433.11 gi|284167418|ref|YP_003405696.1| - 0.0082 15.3 0.1 4.1 6.4 0.0 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF1513) Arylesterase PF01731.20 gi|284167418|ref|YP_003405696.1| - 0.011 16.0 0.0 0.9 9.8 0.0 3.0 3 0 0 3 3 3 0 Arylesterase Flagellin_D3 PF08884.11 gi|284167418|ref|YP_003405696.1| - 0.14 12.6 0.1 0.33 11.4 0.1 1.6 1 0 0 1 1 1 0 Flagellin D3 domain UxaC PF02614.14 gi|284167420|ref|YP_003405698.1| - 8.5e-141 470.0 0.0 9.6e-141 469.8 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase adh_short PF00106.25 gi|284167421|ref|YP_003405699.1| - 1.1e-46 158.8 0.1 1.3e-46 158.6 0.1 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284167421|ref|YP_003405699.1| - 2.7e-46 158.0 0.0 3.2e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284167421|ref|YP_003405699.1| - 2.1e-08 34.3 0.3 3.3e-08 33.6 0.3 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167421|ref|YP_003405699.1| - 8.2e-07 28.7 0.0 2.6e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_Gly3P_dh_N PF01210.23 gi|284167421|ref|YP_003405699.1| - 0.00017 21.6 0.0 0.00038 20.5 0.1 1.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Polysacc_synt_2 PF02719.15 gi|284167421|ref|YP_003405699.1| - 0.00068 18.9 0.1 0.0011 18.2 0.1 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein F420_oxidored PF03807.17 gi|284167421|ref|YP_003405699.1| - 0.0022 18.5 0.8 0.0077 16.8 0.8 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|284167421|ref|YP_003405699.1| - 0.0036 17.2 0.2 0.0045 16.9 0.2 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|284167421|ref|YP_003405699.1| - 0.0069 16.6 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|284167421|ref|YP_003405699.1| - 0.01 16.1 0.4 0.021 15.1 0.4 1.4 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|284167421|ref|YP_003405699.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|284167421|ref|YP_003405699.1| - 0.098 12.5 0.3 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|284167421|ref|YP_003405699.1| - 0.1 12.0 0.1 0.14 11.6 0.1 1.4 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_7 PF13241.6 gi|284167421|ref|YP_003405699.1| - 0.1 13.0 0.1 0.25 11.8 0.1 1.5 2 0 0 2 2 1 0 Putative NAD(P)-binding RmlD_sub_bind PF04321.17 gi|284167421|ref|YP_003405699.1| - 0.16 11.1 0.6 0.28 10.3 0.6 1.4 1 1 0 1 1 1 0 RmlD substrate binding domain AdoHcyase_NAD PF00670.21 gi|284167421|ref|YP_003405699.1| - 0.22 11.6 0.9 0.48 10.5 0.9 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HalOD1 PF18545.1 gi|284167422|ref|YP_003405700.1| - 5.7e-21 74.6 1.3 1.5e-20 73.2 1.3 1.6 1 1 0 1 1 1 1 Halobacterial output domain 1 UxuA PF03786.13 gi|284167423|ref|YP_003405701.1| - 2.6e-82 276.5 0.1 1.7e-57 194.9 0.1 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|284167423|ref|YP_003405701.1| - 2.2e-15 56.7 0.0 3.4e-15 56.1 0.0 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_2_C PF02836.17 gi|284167424|ref|YP_003405702.1| - 7.2e-30 104.1 0.1 2.6e-29 102.3 0.1 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.18 gi|284167424|ref|YP_003405702.1| - 1.8e-20 73.5 0.2 6.9e-20 71.6 0.1 2.1 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|284167424|ref|YP_003405702.1| - 1.5e-06 28.8 0.4 4e-06 27.5 0.4 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.6 gi|284167424|ref|YP_003405702.1| - 1.6e-05 25.4 0.1 4.1e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Aldedh PF00171.22 gi|284167425|ref|YP_003405703.1| - 1.4e-168 561.2 0.4 1.6e-168 561.0 0.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DHDPS PF00701.22 gi|284167426|ref|YP_003405704.1| - 8.6e-33 113.3 0.0 1.1e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family UxuA PF03786.13 gi|284167427|ref|YP_003405705.1| - 4.3e-48 163.9 0.0 6.1e-39 133.8 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|284167427|ref|YP_003405705.1| - 3.1e-14 52.9 0.0 7.7e-14 51.6 0.0 1.7 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Epimerase PF01370.21 gi|284167428|ref|YP_003405706.1| - 3e-21 76.0 0.0 3.9e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284167428|ref|YP_003405706.1| - 4.8e-14 52.5 0.0 8.6e-14 51.7 0.0 1.4 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|284167428|ref|YP_003405706.1| - 1.6e-12 47.2 0.0 3.4e-09 36.3 0.0 2.8 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|284167428|ref|YP_003405706.1| - 1.6e-11 43.7 0.0 2.4e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284167428|ref|YP_003405706.1| - 2.2e-10 40.1 0.0 3e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284167428|ref|YP_003405706.1| - 2.4e-08 34.1 0.0 3.4e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284167428|ref|YP_003405706.1| - 2e-07 30.4 0.0 3.5e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|284167428|ref|YP_003405706.1| - 0.0063 16.1 0.0 0.025 14.2 0.0 1.8 1 1 0 1 1 1 1 NmrA-like family DapB_N PF01113.20 gi|284167428|ref|YP_003405706.1| - 0.036 14.2 0.0 0.073 13.2 0.0 1.5 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus MFS_1 PF07690.16 gi|284167429|ref|YP_003405707.1| - 1.1e-49 169.2 40.7 2.1e-35 122.3 13.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|284167429|ref|YP_003405707.1| - 5.8e-15 55.1 37.0 4.7e-10 38.9 12.6 3.6 2 2 1 3 3 3 3 Sugar (and other) transporter MFS_2 PF13347.6 gi|284167429|ref|YP_003405707.1| - 6.5e-10 38.1 29.0 1.5e-08 33.6 8.5 3.1 1 1 1 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.13 gi|284167429|ref|YP_003405707.1| - 0.00034 19.1 21.9 0.0014 17.1 21.9 2.1 1 1 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|284167429|ref|YP_003405707.1| - 0.00094 18.1 19.0 0.0048 15.8 8.0 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|284167429|ref|YP_003405707.1| - 0.0019 17.6 21.9 0.0023 17.3 21.4 1.3 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB CLN3 PF02487.17 gi|284167429|ref|YP_003405707.1| - 1.6 7.7 12.0 0.15 11.1 1.4 2.3 2 0 0 2 2 2 0 CLN3 protein Usp PF00582.26 gi|284167430|ref|YP_003405708.1| - 1.2e-17 64.7 1.0 4.9e-17 62.8 1.0 1.7 1 1 0 1 1 1 1 Universal stress protein family SBF PF01758.16 gi|284167431|ref|YP_003405709.1| - 1.6e-16 60.5 13.5 1.6e-16 60.5 13.5 2.1 1 1 1 2 2 2 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|284167431|ref|YP_003405709.1| - 8e-05 22.1 10.7 8e-05 22.1 10.7 2.1 1 1 1 2 2 2 1 SBF-like CPA transporter family (DUF4137) Glyoxalase PF00903.25 gi|284167432|ref|YP_003405710.1| - 6.7e-17 61.9 0.3 1.5e-10 41.3 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284167432|ref|YP_003405710.1| - 4.8e-06 27.3 1.6 0.002 18.9 0.2 2.5 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|284167432|ref|YP_003405710.1| - 0.0063 16.8 0.5 0.21 11.9 0.1 3.3 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDE_Tnp_IS240 PF13610.6 gi|284167433|ref|YP_003405711.1| - 7.1e-11 42.5 0.1 1e-10 42.0 0.1 1.3 1 0 0 1 1 1 1 DDE domain DNA_photolyase PF00875.18 gi|284167433|ref|YP_003405711.1| - 0.027 14.5 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 DNA photolyase Transglut_core3 PF13471.6 gi|284167433|ref|YP_003405711.1| - 0.064 13.2 0.0 4.5 7.2 0.0 2.2 2 0 0 2 2 2 0 Transglutaminase-like superfamily PTPlike_phytase PF14566.6 gi|284167433|ref|YP_003405711.1| - 0.085 13.0 0.1 0.15 12.2 0.1 1.4 1 1 0 1 1 1 0 Inositol hexakisphosphate Pyr_redox_2 PF07992.14 gi|284167434|ref|YP_003405712.1| - 1.4e-40 139.4 3.1 1.7e-40 139.1 3.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284167434|ref|YP_003405712.1| - 5.2e-20 71.8 1.7 2.5e-17 63.2 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284167434|ref|YP_003405712.1| - 1e-17 64.4 0.5 2.2e-13 50.2 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284167434|ref|YP_003405712.1| - 1.4e-09 37.5 6.1 4.9e-05 22.6 0.3 4.1 3 1 1 4 4 4 3 FAD binding domain FAD_oxidored PF12831.7 gi|284167434|ref|YP_003405712.1| - 5.4e-06 26.0 0.8 5.4e-05 22.7 0.3 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284167434|ref|YP_003405712.1| - 7.5e-06 26.1 0.1 8.4e-05 22.7 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284167434|ref|YP_003405712.1| - 2.7e-05 23.1 0.4 0.062 12.0 0.1 3.3 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|284167434|ref|YP_003405712.1| - 5.5e-05 22.5 0.1 0.0024 17.2 0.0 2.3 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|284167434|ref|YP_003405712.1| - 7.5e-05 22.5 7.9 0.0014 18.3 0.3 3.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|284167434|ref|YP_003405712.1| - 0.00032 21.1 0.1 0.007 16.8 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.22 gi|284167434|ref|YP_003405712.1| - 0.00093 18.4 4.6 0.028 13.5 0.2 3.4 4 0 0 4 4 4 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|284167434|ref|YP_003405712.1| - 0.0019 17.6 0.3 0.085 12.1 0.3 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|284167434|ref|YP_003405712.1| - 0.0042 16.2 0.6 0.74 8.8 0.2 2.8 3 0 0 3 3 3 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|284167434|ref|YP_003405712.1| - 0.011 14.9 0.0 0.17 11.0 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|284167434|ref|YP_003405712.1| - 0.055 12.7 6.7 2 7.6 0.3 3.5 3 1 1 4 4 4 0 FAD binding domain FMO-like PF00743.19 gi|284167434|ref|YP_003405712.1| - 0.16 10.4 0.0 3.4 6.0 0.0 2.0 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like MCRA PF06100.11 gi|284167434|ref|YP_003405712.1| - 0.24 10.2 0.2 0.42 9.3 0.0 1.4 2 0 0 2 2 2 0 MCRA family Thioredoxin PF00085.20 gi|284167435|ref|YP_003405713.1| - 1.9e-27 95.2 0.0 2.1e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|284167435|ref|YP_003405713.1| - 5.4e-11 42.9 0.0 1.5e-05 25.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|284167435|ref|YP_003405713.1| - 8.6e-06 26.0 0.0 0.0055 17.0 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|284167435|ref|YP_003405713.1| - 1e-05 25.6 0.0 2.2e-05 24.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like DSBA PF01323.20 gi|284167435|ref|YP_003405713.1| - 6.7e-05 22.8 0.1 0.0011 18.7 0.0 2.0 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_9 PF14595.6 gi|284167435|ref|YP_003405713.1| - 0.00013 21.7 0.0 0.00014 21.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|284167435|ref|YP_003405713.1| - 0.00024 21.0 0.0 0.00032 20.6 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.11 gi|284167435|ref|YP_003405713.1| - 0.0026 17.7 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|284167435|ref|YP_003405713.1| - 0.006 16.0 0.0 0.008 15.6 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|284167435|ref|YP_003405713.1| - 0.025 14.5 0.0 0.14 12.1 0.0 1.8 1 1 1 2 2 2 0 AhpC/TSA family DUF836 PF05768.14 gi|284167435|ref|YP_003405713.1| - 0.044 14.2 0.0 0.058 13.8 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|284167435|ref|YP_003405713.1| - 0.048 13.9 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_3 PF13192.6 gi|284167435|ref|YP_003405713.1| - 0.076 13.1 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain Methyltransf_11 PF08241.12 gi|284167436|ref|YP_003405714.1| - 3.8e-21 75.5 0.0 6.2e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284167436|ref|YP_003405714.1| - 1.3e-20 73.9 0.0 2e-20 73.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284167436|ref|YP_003405714.1| - 5.4e-20 71.7 0.0 6.9e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|284167436|ref|YP_003405714.1| - 4.2e-17 62.4 0.0 5.5e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167436|ref|YP_003405714.1| - 1.7e-13 51.1 0.0 2.8e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284167436|ref|YP_003405714.1| - 1.6e-12 47.6 0.0 2.1e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|284167436|ref|YP_003405714.1| - 9.4e-11 41.9 0.0 1.3e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|284167436|ref|YP_003405714.1| - 7.7e-05 22.5 0.0 0.0001 22.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit NodS PF05401.11 gi|284167436|ref|YP_003405714.1| - 0.00019 21.1 0.0 0.00042 20.0 0.0 1.5 1 1 0 1 1 1 1 Nodulation protein S (NodS) Methyltr_RsmB-F PF01189.17 gi|284167436|ref|YP_003405714.1| - 0.00022 21.0 0.0 0.00035 20.3 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|284167436|ref|YP_003405714.1| - 0.0017 17.5 0.0 0.0021 17.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Fibrillarin PF01269.17 gi|284167436|ref|YP_003405714.1| - 0.003 16.7 0.0 0.0035 16.5 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin DREV PF05219.12 gi|284167436|ref|YP_003405714.1| - 0.0034 16.5 0.0 0.0056 15.8 0.0 1.3 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_4 PF02390.17 gi|284167436|ref|YP_003405714.1| - 0.0034 16.9 0.0 0.014 14.9 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase DUF938 PF06080.12 gi|284167436|ref|YP_003405714.1| - 0.0048 16.7 0.0 0.0074 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_3 PF01596.17 gi|284167436|ref|YP_003405714.1| - 0.0096 15.1 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.6 gi|284167436|ref|YP_003405714.1| - 0.012 15.6 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|284167436|ref|YP_003405714.1| - 0.031 13.8 0.0 0.061 12.9 0.0 1.4 2 0 0 2 2 2 0 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|284167436|ref|YP_003405714.1| - 0.05 14.6 0.0 0.096 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|284167436|ref|YP_003405714.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.20 gi|284167436|ref|YP_003405714.1| - 0.15 11.3 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CheR PF01739.18 gi|284167436|ref|YP_003405714.1| - 0.22 11.0 0.0 1.2 8.6 0.0 1.9 2 0 0 2 2 2 0 CheR methyltransferase, SAM binding domain DUF302 PF03625.14 gi|284167437|ref|YP_003405715.1| - 6e-27 93.3 0.0 9e-27 92.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 DUF3215 PF11503.8 gi|284167437|ref|YP_003405715.1| - 0.13 12.2 1.9 0.13 12.1 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) Rhodanese PF00581.20 gi|284167438|ref|YP_003405716.1| - 0.018 15.6 0.0 0.018 15.5 0.0 1.1 1 0 0 1 1 1 0 Rhodanese-like domain DUF2892 PF11127.8 gi|284167439|ref|YP_003405717.1| - 3.3e-14 52.7 6.0 1.8e-13 50.3 6.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1772 PF08592.11 gi|284167439|ref|YP_003405717.1| - 0.0094 16.3 0.1 0.01 16.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1772) DUF2244 PF10003.9 gi|284167439|ref|YP_003405717.1| - 0.29 10.8 1.8 0.34 10.6 1.8 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) UPF0444 PF15475.6 gi|284167439|ref|YP_003405717.1| - 0.34 11.2 4.0 0.45 10.8 4.0 1.2 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 Phage_holin_3_6 PF07332.11 gi|284167439|ref|YP_003405717.1| - 3.8 7.6 10.9 5 7.2 10.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III SdpI PF13630.6 gi|284167439|ref|YP_003405717.1| - 5.9 7.1 7.5 43 4.3 5.6 2.2 2 0 0 2 2 2 0 SdpI/YhfL protein family Pyridox_ox_2 PF12900.7 gi|284167440|ref|YP_003405718.1| - 2e-14 53.8 0.0 2.2e-14 53.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase adh_short_C2 PF13561.6 gi|284167441|ref|YP_003405719.1| - 4.4e-70 235.9 0.9 5.1e-70 235.7 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284167441|ref|YP_003405719.1| - 7.9e-55 185.4 0.6 1e-54 185.0 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284167441|ref|YP_003405719.1| - 3.6e-16 59.6 0.3 4.8e-16 59.2 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284167441|ref|YP_003405719.1| - 5.6e-06 26.0 0.1 4.8e-05 22.9 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284167441|ref|YP_003405719.1| - 6.9e-05 22.0 0.4 9.8e-05 21.5 0.4 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|284167441|ref|YP_003405719.1| - 0.0006 19.7 0.9 0.00089 19.2 0.9 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|284167441|ref|YP_003405719.1| - 0.0056 16.9 0.1 0.043 14.1 0.1 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|284167441|ref|YP_003405719.1| - 0.011 15.6 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Abhydrolase_6 PF12697.7 gi|284167442|ref|YP_003405720.1| - 3.4e-20 73.6 0.0 4.5e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|284167442|ref|YP_003405720.1| - 3.8e-18 66.1 0.0 2.8e-16 59.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|284167442|ref|YP_003405720.1| - 6e-15 55.1 0.2 6.4e-14 51.8 0.2 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|284167442|ref|YP_003405720.1| - 3.5e-05 24.0 0.1 4.8e-05 23.6 0.1 1.4 1 1 0 1 1 1 1 Thioesterase domain Palm_thioest PF02089.15 gi|284167442|ref|YP_003405720.1| - 0.029 14.2 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 Palmitoyl protein thioesterase PGAP1 PF07819.13 gi|284167442|ref|YP_003405720.1| - 0.044 13.5 0.1 0.68 9.6 0.1 2.2 1 1 0 1 1 1 0 PGAP1-like protein DUF3530 PF12048.8 gi|284167442|ref|YP_003405720.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3530) FSH1 PF03959.13 gi|284167442|ref|YP_003405720.1| - 0.14 11.8 0.0 1.2 8.7 0.0 2.1 1 1 1 2 2 2 0 Serine hydrolase (FSH1) UPF0182 PF03699.13 gi|284167443|ref|YP_003405721.1| - 3.4 5.7 9.6 5.3 5.1 9.6 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) SBP56 PF05694.11 gi|284167444|ref|YP_003405722.1| - 6.1e-198 658.2 0.1 7e-198 658.0 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|284167444|ref|YP_003405722.1| - 0.0037 16.6 0.0 0.18 11.0 0.0 2.5 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Beta_propel PF09826.9 gi|284167444|ref|YP_003405722.1| - 0.045 12.6 0.0 0.46 9.3 0.0 2.0 2 0 0 2 2 2 0 Beta propeller domain MarR_2 PF12802.7 gi|284167445|ref|YP_003405723.1| - 0.00084 19.2 1.8 0.0023 17.8 0.3 2.5 3 0 0 3 3 3 1 MarR family DUF1724 PF08350.10 gi|284167445|ref|YP_003405723.1| - 0.019 15.1 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_IclR PF09339.10 gi|284167445|ref|YP_003405723.1| - 0.02 14.7 0.2 0.05 13.4 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284167445|ref|YP_003405723.1| - 0.023 14.7 0.2 0.05 13.6 0.2 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MFS_1 PF07690.16 gi|284167446|ref|YP_003405724.1| - 6.3e-35 120.7 61.2 2.1e-28 99.3 34.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|284167446|ref|YP_003405724.1| - 0.00017 20.5 0.6 0.00017 20.5 0.6 2.0 2 0 0 2 2 2 1 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|284167446|ref|YP_003405724.1| - 0.37 9.6 16.9 1.3 7.8 1.7 2.2 1 1 1 2 2 2 0 MFS_1 like family HalOD1 PF18545.1 gi|284167448|ref|YP_003405726.1| - 4.7e-23 81.2 0.0 5.2e-23 81.1 0.0 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|284167450|ref|YP_003405728.1| - 1.8e-14 53.2 0.1 3.2e-14 52.5 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284167450|ref|YP_003405728.1| - 5.2e-08 32.9 0.0 2.6e-07 30.6 0.0 2.0 2 1 1 3 3 3 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|284167450|ref|YP_003405728.1| - 0.16 11.6 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284167450|ref|YP_003405728.1| - 0.19 11.6 1.0 0.34 10.8 0.2 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PAS_4 PF08448.10 gi|284167451|ref|YP_003405729.1| - 4.6e-33 113.7 10.4 1.3e-12 48.0 0.2 3.8 4 0 0 4 4 3 3 PAS fold BAT PF15915.5 gi|284167451|ref|YP_003405729.1| - 2.6e-28 98.9 5.2 1.1e-27 96.8 5.2 2.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|284167451|ref|YP_003405729.1| - 1.1e-22 80.2 0.6 1.6e-13 50.6 0.0 3.8 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.6 gi|284167451|ref|YP_003405729.1| - 1.4e-19 70.8 0.2 6.4e-18 65.4 0.1 2.6 2 0 0 2 2 2 1 GAF domain HTH_10 PF04967.12 gi|284167451|ref|YP_003405729.1| - 4.4e-19 68.0 0.0 5.7e-18 64.5 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain PAS_9 PF13426.7 gi|284167451|ref|YP_003405729.1| - 1.1e-17 64.1 0.1 1.8e-10 41.0 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|284167451|ref|YP_003405729.1| - 3.7e-13 49.2 0.2 7.5e-09 35.4 0.0 3.0 2 0 0 2 2 2 2 PAS domain HTH_20 PF12840.7 gi|284167451|ref|YP_003405729.1| - 1.8e-07 31.1 0.0 0.039 14.0 0.0 3.1 2 0 0 2 2 2 2 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|284167451|ref|YP_003405729.1| - 5.6e-07 29.0 0.0 0.00027 20.4 0.0 2.9 2 0 0 2 2 2 1 Sigma-70, region 4 PAS_10 PF13596.6 gi|284167451|ref|YP_003405729.1| - 6.1e-07 30.0 0.2 0.21 12.2 0.0 4.5 4 0 0 4 4 4 1 PAS domain PAS_7 PF12860.7 gi|284167451|ref|YP_003405729.1| - 7e-07 29.4 0.1 0.013 15.6 0.1 3.9 3 1 0 3 3 2 2 PAS fold PAS_3 PF08447.12 gi|284167451|ref|YP_003405729.1| - 1e-06 28.9 0.0 6.9e-05 23.1 0.0 3.7 4 0 0 4 4 3 1 PAS fold HTH_24 PF13412.6 gi|284167451|ref|YP_003405729.1| - 5e-06 26.0 0.1 0.029 13.9 0.0 3.3 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|284167451|ref|YP_003405729.1| - 7.2e-06 25.6 0.0 0.0062 16.2 0.0 3.4 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|284167451|ref|YP_003405729.1| - 2.3e-05 24.2 0.0 0.052 13.5 0.0 2.5 2 0 0 2 2 2 2 HTH domain TetR_N PF00440.23 gi|284167451|ref|YP_003405729.1| - 0.00039 20.1 0.0 0.46 10.3 0.0 2.8 3 0 0 3 3 2 1 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.6 gi|284167451|ref|YP_003405729.1| - 0.00078 19.4 0.0 1.9 8.6 0.0 2.9 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain GAF PF01590.26 gi|284167451|ref|YP_003405729.1| - 0.00085 20.0 0.0 0.0033 18.0 0.0 2.1 2 0 0 2 2 1 1 GAF domain HTH_5 PF01022.20 gi|284167451|ref|YP_003405729.1| - 0.0013 18.5 0.0 0.0031 17.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284167451|ref|YP_003405729.1| - 0.0013 18.5 0.0 1.2 9.0 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_17 PF12728.7 gi|284167451|ref|YP_003405729.1| - 0.0015 18.6 0.0 0.44 10.8 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|284167451|ref|YP_003405729.1| - 0.0016 18.3 0.0 0.0088 15.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB GAF_3 PF13492.6 gi|284167451|ref|YP_003405729.1| - 0.0028 18.0 0.0 0.0074 16.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain HTH_23 PF13384.6 gi|284167451|ref|YP_003405729.1| - 0.0061 16.3 0.0 0.74 9.7 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|284167451|ref|YP_003405729.1| - 0.0096 15.7 0.3 25 4.8 0.0 3.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284167451|ref|YP_003405729.1| - 0.016 15.4 0.0 2.1 8.6 0.0 2.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_38 PF13936.6 gi|284167451|ref|YP_003405729.1| - 0.035 13.9 0.1 1.3 8.8 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain GerE PF00196.19 gi|284167451|ref|YP_003405729.1| - 0.049 13.2 0.0 3.5 7.2 0.0 2.9 2 1 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_30 PF13556.6 gi|284167451|ref|YP_003405729.1| - 0.092 12.6 0.1 4.2 7.2 0.0 3.4 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain Sigma70_ECF PF07638.11 gi|284167451|ref|YP_003405729.1| - 0.22 11.4 1.6 19 5.1 0.0 3.1 4 0 0 4 4 3 0 ECF sigma factor DASH_Duo1 PF08651.10 gi|284167451|ref|YP_003405729.1| - 0.24 11.2 1.1 2.8 7.8 0.1 2.5 2 0 0 2 2 2 0 DASH complex subunit Duo1 Cupin_2 PF07883.11 gi|284167453|ref|YP_003405731.1| - 6e-17 61.1 0.2 8.6e-17 60.6 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284167453|ref|YP_003405731.1| - 1e-06 28.7 0.0 1.2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|284167453|ref|YP_003405731.1| - 0.03 13.9 0.0 0.076 12.6 0.0 1.7 1 1 1 2 2 2 0 Cupin Cupin_3 PF05899.12 gi|284167453|ref|YP_003405731.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|284167453|ref|YP_003405731.1| - 0.14 11.6 0.0 3.3 7.1 0.0 2.0 1 1 1 2 2 2 0 PCO_ADO Methyltransf_31 PF13847.6 gi|284167455|ref|YP_003405733.1| - 3.5e-19 69.1 0.0 4.8e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284167455|ref|YP_003405733.1| - 3.7e-15 56.4 0.1 7.9e-15 55.3 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167455|ref|YP_003405733.1| - 8.2e-15 55.4 0.0 2.6e-14 53.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284167455|ref|YP_003405733.1| - 3.6e-13 50.0 0.1 9.5e-12 45.4 0.1 2.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284167455|ref|YP_003405733.1| - 4.6e-10 39.6 0.0 7.6e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284167455|ref|YP_003405733.1| - 4.5e-08 32.8 0.0 7.8e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|284167455|ref|YP_003405733.1| - 1.9e-07 30.7 0.0 2.8e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|284167455|ref|YP_003405733.1| - 1.7e-06 27.5 0.3 3.6e-06 26.4 0.1 1.6 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|284167455|ref|YP_003405733.1| - 3.5e-06 27.0 0.0 7e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|284167455|ref|YP_003405733.1| - 5.6e-06 25.9 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|284167455|ref|YP_003405733.1| - 2.1e-05 24.0 0.0 3.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|284167455|ref|YP_003405733.1| - 0.00014 21.3 0.1 0.00024 20.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|284167455|ref|YP_003405733.1| - 0.00022 21.3 0.0 0.00035 20.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|284167455|ref|YP_003405733.1| - 0.00049 19.7 0.0 0.00077 19.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|284167455|ref|YP_003405733.1| - 0.00056 19.7 0.0 0.00095 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|284167455|ref|YP_003405733.1| - 0.012 14.5 0.0 0.022 13.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|284167455|ref|YP_003405733.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.17 gi|284167455|ref|YP_003405733.1| - 0.021 14.0 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase GidB PF02527.15 gi|284167455|ref|YP_003405733.1| - 0.03 13.7 0.1 0.059 12.7 0.1 1.5 1 1 0 1 1 1 0 rRNA small subunit methyltransferase G NodS PF05401.11 gi|284167455|ref|YP_003405733.1| - 0.031 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) GCD14 PF08704.10 gi|284167455|ref|YP_003405733.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit TrmB PF01978.19 gi|284167455|ref|YP_003405733.1| - 0.16 11.8 0.1 0.35 10.8 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1059 PF06348.11 gi|284167456|ref|YP_003405734.1| - 2.4e-06 27.7 1.8 2.7e-06 27.5 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) FAD_binding_3 PF01494.19 gi|284167457|ref|YP_003405735.1| - 2.3e-08 33.7 0.1 5.8e-07 29.1 0.1 2.1 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|284167457|ref|YP_003405735.1| - 7.3e-05 21.8 0.0 0.26 10.1 0.0 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|284167457|ref|YP_003405735.1| - 0.00013 21.3 0.0 0.11 11.8 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284167457|ref|YP_003405735.1| - 0.001 18.2 0.1 0.012 14.8 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain SE PF08491.10 gi|284167457|ref|YP_003405735.1| - 0.0035 16.4 0.0 0.0065 15.5 0.0 1.4 1 0 0 1 1 1 1 Squalene epoxidase NAD_binding_8 PF13450.6 gi|284167457|ref|YP_003405735.1| - 0.062 13.5 0.0 0.61 10.4 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|284167457|ref|YP_003405735.1| - 0.3 10.4 1.0 0.79 9.0 1.0 1.7 1 1 0 1 1 1 0 FAD dependent oxidoreductase Usp PF00582.26 gi|284167458|ref|YP_003405736.1| - 1.3e-62 210.4 12.9 6.3e-34 117.5 3.8 2.0 2 0 0 2 2 2 2 Universal stress protein family Bac_thur_toxin PF01338.18 gi|284167458|ref|YP_003405736.1| - 0.0051 16.3 0.0 0.025 14.0 0.0 1.8 2 0 0 2 2 2 1 Bacillus thuringiensis toxin SRP54 PF00448.22 gi|284167458|ref|YP_003405736.1| - 0.01 15.5 0.1 0.22 11.1 0.0 2.5 1 1 2 3 3 3 0 SRP54-type protein, GTPase domain ABC2_membrane_2 PF12679.7 gi|284167460|ref|YP_003405738.1| - 2.9e-12 46.5 17.7 1.2e-11 44.4 17.7 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|284167460|ref|YP_003405738.1| - 6.3e-09 35.4 5.8 6.3e-09 35.4 5.8 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|284167460|ref|YP_003405738.1| - 8.1e-06 25.5 8.0 2.3e-05 24.0 7.2 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|284167460|ref|YP_003405738.1| - 3.5e-05 23.8 6.9 3.5e-05 23.8 6.9 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|284167460|ref|YP_003405738.1| - 0.00031 20.2 11.7 0.00031 20.2 11.7 1.8 2 1 0 2 2 2 1 ABC-2 type transporter NPCBM_assoc PF10633.9 gi|284167461|ref|YP_003405739.1| - 3.5e-07 30.4 11.8 0.0022 18.2 0.7 3.6 2 1 0 2 2 2 2 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|284167461|ref|YP_003405739.1| - 1.8e-05 25.0 15.6 0.0079 16.5 3.5 4.0 3 1 0 3 3 3 2 Domain of unknown function DUF11 CARDB PF07705.11 gi|284167461|ref|YP_003405739.1| - 0.00014 22.1 8.2 0.075 13.3 3.9 2.7 2 1 0 2 2 2 2 CARDB Fn3-like PF14310.6 gi|284167461|ref|YP_003405739.1| - 0.02 15.0 1.4 1.9 8.7 0.0 3.4 3 0 0 3 3 3 0 Fibronectin type III-like domain DUF2393 PF09624.10 gi|284167461|ref|YP_003405739.1| - 0.027 14.5 0.0 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) DUF3869 PF12985.7 gi|284167461|ref|YP_003405739.1| - 0.38 11.1 3.3 0.41 11.1 1.2 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF3869) ABC_tran PF00005.27 gi|284167462|ref|YP_003405740.1| - 1.4e-25 90.4 0.0 2e-25 89.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284167462|ref|YP_003405740.1| - 3.1e-12 46.9 1.6 1.2e-06 28.5 0.0 2.8 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Usp PF00582.26 gi|284167462|ref|YP_003405740.1| - 2.8e-06 27.9 0.1 6.1e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Universal stress protein family DUF4162 PF13732.6 gi|284167462|ref|YP_003405740.1| - 0.00047 20.8 0.0 0.0009 19.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|284167462|ref|YP_003405740.1| - 0.0037 17.8 0.0 0.0062 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284167462|ref|YP_003405740.1| - 0.016 15.0 0.1 0.028 14.2 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284167462|ref|YP_003405740.1| - 0.036 14.0 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|284167462|ref|YP_003405740.1| - 0.071 13.3 0.4 0.57 10.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|284167462|ref|YP_003405740.1| - 0.08 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Usp PF00582.26 gi|284167463|ref|YP_003405741.1| - 3.6e-28 98.8 1.8 4.1e-28 98.6 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|284167463|ref|YP_003405741.1| - 0.042 14.6 0.0 0.061 14.1 0.0 1.4 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Pyridox_ox_2 PF12900.7 gi|284167464|ref|YP_003405742.1| - 2.3e-16 60.1 0.0 2.7e-16 59.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase MaoC_dehydratas PF01575.19 gi|284167465|ref|YP_003405743.1| - 1.6e-19 69.6 0.0 2.6e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284167465|ref|YP_003405743.1| - 3.8e-07 30.3 0.1 1.2e-06 28.7 0.1 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|284167465|ref|YP_003405743.1| - 0.0073 16.6 0.1 0.02 15.3 0.0 1.8 1 1 0 1 1 1 1 Thioesterase superfamily TruB_C PF09142.11 gi|284167465|ref|YP_003405743.1| - 0.083 12.7 0.1 0.26 11.1 0.1 1.9 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal Usp PF00582.26 gi|284167466|ref|YP_003405744.1| - 6.8e-40 136.8 0.8 2.6e-24 86.3 0.1 2.4 2 1 0 2 2 2 2 Universal stress protein family Usp PF00582.26 gi|284167467|ref|YP_003405745.1| - 9.4e-07 29.4 1.7 1.2e-06 29.1 1.7 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|284167468|ref|YP_003405746.1| - 9.7e-35 120.1 0.2 1.2e-34 119.8 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family Flavodoxin_5 PF12724.7 gi|284167469|ref|YP_003405747.1| - 5.3e-39 133.7 0.0 6.9e-39 133.4 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|284167469|ref|YP_003405747.1| - 6.8e-08 32.8 0.0 1.2e-07 32.1 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|284167469|ref|YP_003405747.1| - 0.00012 21.9 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin domain EccE PF11203.8 gi|284167469|ref|YP_003405747.1| - 0.024 15.0 0.0 0.06 13.7 0.0 1.7 1 0 0 1 1 1 0 Putative type VII ESX secretion system translocon, EccE FMN_red PF03358.15 gi|284167469|ref|YP_003405747.1| - 0.036 13.8 0.0 0.068 12.9 0.0 1.6 1 1 0 1 1 1 0 NADPH-dependent FMN reductase TauE PF01925.19 gi|284167470|ref|YP_003405748.1| - 1.4e-41 142.7 34.6 1.4e-41 142.7 34.6 1.9 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE CPBP PF02517.16 gi|284167471|ref|YP_003405749.1| - 4.1e-14 52.7 6.2 4.1e-14 52.7 6.2 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease ArsP_1 PF03773.13 gi|284167472|ref|YP_003405750.1| - 3.9e-57 193.6 14.1 5.4e-57 193.2 14.1 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|284167472|ref|YP_003405750.1| - 5.2e-19 68.1 5.4 9.9e-15 54.4 1.5 2.4 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|284167472|ref|YP_003405750.1| - 2.9e-05 23.9 0.6 0.049 13.6 0.1 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|284167472|ref|YP_003405750.1| - 0.15 12.5 0.2 0.15 12.5 0.2 1.9 2 0 0 2 2 2 0 Archaeal TRASH domain DUF2116 PF09889.9 gi|284167472|ref|YP_003405750.1| - 2.8 8.0 13.8 2.6 8.1 0.0 4.2 4 0 0 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) MFS_1 PF07690.16 gi|284167474|ref|YP_003405752.1| - 2.1e-37 128.9 37.2 1.7e-19 70.0 18.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|284167474|ref|YP_003405752.1| - 4.4e-08 32.4 15.4 0.0061 15.5 3.2 3.5 3 1 1 4 4 4 3 MFS_1 like family Sugar_tr PF00083.24 gi|284167474|ref|YP_003405752.1| - 4e-05 22.7 24.3 0.012 14.5 8.1 2.6 1 1 1 2 2 2 2 Sugar (and other) transporter YiaAB PF05360.14 gi|284167474|ref|YP_003405752.1| - 8.4 6.7 13.0 0.23 11.7 2.6 3.5 2 1 0 2 2 2 0 yiaA/B two helix domain Lactamase_B PF00753.27 gi|284167475|ref|YP_003405753.1| - 3.2e-13 50.1 9.4 3.1e-12 46.9 9.4 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|284167475|ref|YP_003405753.1| - 1.2e-12 48.3 0.0 3.1e-12 46.9 0.0 1.8 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|284167475|ref|YP_003405753.1| - 0.00018 21.1 4.5 0.0045 16.5 1.9 2.8 2 1 0 2 2 2 2 Beta-lactamase superfamily domain HTH_10 PF04967.12 gi|284167476|ref|YP_003405754.1| - 5.3e-21 74.2 0.4 9.3e-21 73.4 0.4 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|284167476|ref|YP_003405754.1| - 0.023 14.8 0.1 0.042 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 gi|284167476|ref|YP_003405754.1| - 0.077 12.6 0.0 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Phage_holin_3_6 PF07332.11 gi|284167477|ref|YP_003405755.1| - 0.12 12.5 4.4 0.15 12.1 4.4 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Pyridox_ox_2 PF12900.7 gi|284167478|ref|YP_003405756.1| - 2.7e-18 66.3 0.3 3.1e-18 66.1 0.3 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|284167478|ref|YP_003405756.1| - 0.017 15.3 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Polyketide_cyc2 PF10604.9 gi|284167479|ref|YP_003405757.1| - 2 8.6 8.5 0.61 10.4 2.2 3.1 3 2 0 3 3 3 0 Polyketide cyclase / dehydrase and lipid transport Orai-1 PF07856.12 gi|284167481|ref|YP_003405759.1| - 0.021 14.5 0.1 0.034 13.8 0.1 1.6 1 1 0 1 1 1 0 Mediator of CRAC channel activity Git3 PF11710.8 gi|284167481|ref|YP_003405759.1| - 0.045 13.5 0.1 0.07 12.9 0.1 1.3 1 0 0 1 1 1 0 G protein-coupled glucose receptor regulating Gpa2 VIT1 PF01988.19 gi|284167483|ref|YP_003405761.1| - 2.5e-09 37.4 4.8 2.5e-09 37.4 4.8 2.1 1 1 0 2 2 2 1 VIT family BTP PF05232.12 gi|284167483|ref|YP_003405761.1| - 3.2 7.9 7.7 2.9 8.0 0.0 2.8 2 1 1 3 3 3 0 Chlorhexidine efflux transporter DUF211 PF02680.14 gi|284167484|ref|YP_003405762.1| - 4.4e-35 119.7 0.7 4.9e-35 119.6 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Cation_ATPase_C PF00689.21 gi|284167485|ref|YP_003405763.1| - 7.3e-07 29.1 0.4 8.4e-07 28.9 0.4 1.1 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus BAT PF15915.5 gi|284167486|ref|YP_003405764.1| - 1.4e-35 122.5 5.1 1.4e-35 122.5 5.1 3.2 4 0 0 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|284167486|ref|YP_003405764.1| - 2.3e-33 115.4 5.6 2.2e-20 73.4 0.6 3.0 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|284167486|ref|YP_003405764.1| - 1.5e-25 90.4 0.2 1.5e-13 51.5 0.1 2.7 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|284167486|ref|YP_003405764.1| - 1.4e-22 79.2 0.0 1.7e-21 75.7 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain GAF_3 PF13492.6 gi|284167486|ref|YP_003405764.1| - 1.7e-20 73.7 0.1 6.1e-13 49.2 0.0 2.8 2 0 0 2 2 2 2 GAF domain PAS_4 PF08448.10 gi|284167486|ref|YP_003405764.1| - 3.6e-19 69.0 10.8 2.7e-12 46.9 0.4 3.5 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|284167486|ref|YP_003405764.1| - 1.2e-18 67.1 0.1 4.2e-11 42.8 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|284167486|ref|YP_003405764.1| - 5.1e-18 65.2 0.0 2.3e-10 40.7 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|284167486|ref|YP_003405764.1| - 1e-12 47.7 0.5 3.1e-09 36.7 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|284167486|ref|YP_003405764.1| - 1.3e-09 38.3 0.2 0.00017 21.8 0.1 3.0 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|284167486|ref|YP_003405764.1| - 0.0004 20.6 0.0 0.0034 17.6 0.0 2.5 2 0 0 2 2 2 1 PAS fold PAS_10 PF13596.6 gi|284167486|ref|YP_003405764.1| - 0.0061 17.1 0.0 0.2 12.3 0.0 2.9 3 0 0 3 3 2 1 PAS domain MarR_2 PF12802.7 gi|284167486|ref|YP_003405764.1| - 0.0094 15.8 4.7 15 5.6 0.0 3.7 3 0 0 3 3 3 0 MarR family HTH_24 PF13412.6 gi|284167486|ref|YP_003405764.1| - 0.012 15.1 0.0 1.6 8.3 0.0 2.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DotD PF16816.5 gi|284167486|ref|YP_003405764.1| - 0.017 15.1 0.0 0.21 11.5 0.0 2.5 2 0 0 2 2 2 0 DotD protein TrmB PF01978.19 gi|284167486|ref|YP_003405764.1| - 0.023 14.6 0.2 0.24 11.3 0.0 2.7 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284167486|ref|YP_003405764.1| - 0.025 14.6 2.6 0.75 9.9 0.9 3.3 2 0 0 2 2 2 0 Helix-turn-helix domain Svf1 PF08622.10 gi|284167487|ref|YP_003405765.1| - 0.14 12.1 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Svf1-like N-terminal lipocalin domain NTP_transf_2 PF01909.23 gi|284167489|ref|YP_003405767.1| - 8.1e-11 42.1 0.3 1.4e-10 41.3 0.3 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|284167489|ref|YP_003405767.1| - 4.2e-09 36.4 0.1 8.2e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_11 PF08279.12 gi|284167489|ref|YP_003405767.1| - 1.2e-08 34.7 0.0 2.8e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|284167489|ref|YP_003405767.1| - 5e-05 23.0 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284167489|ref|YP_003405767.1| - 0.00016 21.5 0.7 0.00057 19.7 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_29 PF13551.6 gi|284167489|ref|YP_003405767.1| - 0.0016 18.4 0.0 0.0042 17.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|284167489|ref|YP_003405767.1| - 0.0017 18.2 0.0 0.0031 17.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|284167489|ref|YP_003405767.1| - 0.01 15.5 0.1 0.031 13.9 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|284167489|ref|YP_003405767.1| - 0.012 15.1 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|284167489|ref|YP_003405767.1| - 0.016 15.2 0.3 0.036 14.0 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|284167489|ref|YP_003405767.1| - 0.02 14.7 0.1 0.062 13.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_20 PF12840.7 gi|284167489|ref|YP_003405767.1| - 0.06 13.4 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF294 PF03445.13 gi|284167489|ref|YP_003405767.1| - 0.065 13.0 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MarR PF01047.22 gi|284167489|ref|YP_003405767.1| - 0.066 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Adenyl_cycl_N PF12633.7 gi|284167489|ref|YP_003405767.1| - 0.21 11.5 0.0 0.31 10.9 0.0 1.2 1 0 0 1 1 1 0 Adenylate cyclase NT domain DUF302 PF03625.14 gi|284167490|ref|YP_003405768.1| - 1.7e-16 59.8 0.0 2.9e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|284167491|ref|YP_003405769.1| - 4.7e-19 68.8 0.0 7.2e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284167491|ref|YP_003405769.1| - 1.3e-16 61.0 0.1 2.1e-16 60.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284167491|ref|YP_003405769.1| - 2.6e-11 43.5 0.0 3.2e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284167491|ref|YP_003405769.1| - 9.9e-08 31.6 0.0 1.5e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284167491|ref|YP_003405769.1| - 1.1e-06 28.5 0.0 2.9e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167491|ref|YP_003405769.1| - 4.6e-06 27.3 0.0 7.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|284167491|ref|YP_003405769.1| - 6e-05 22.3 0.0 9.9e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|284167491|ref|YP_003405769.1| - 0.0005 20.0 0.0 0.0012 18.8 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.20 gi|284167491|ref|YP_003405769.1| - 0.00068 18.8 0.0 0.00081 18.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|284167491|ref|YP_003405769.1| - 0.0019 18.3 0.0 0.0021 18.2 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_2 PF00891.18 gi|284167491|ref|YP_003405769.1| - 0.0068 15.7 0.0 0.0087 15.4 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain MTS PF05175.14 gi|284167491|ref|YP_003405769.1| - 0.019 14.5 0.0 0.083 12.4 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase small domain Cu-oxidase_3 PF07732.15 gi|284167492|ref|YP_003405770.1| - 1e-43 148.1 0.0 2.2e-32 111.6 0.0 3.2 3 0 0 3 3 3 3 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|284167492|ref|YP_003405770.1| - 2.5e-34 117.9 2.9 9.3e-24 83.7 2.4 4.9 3 2 0 3 3 3 3 Multicopper oxidase Cu-oxidase PF00394.22 gi|284167492|ref|YP_003405770.1| - 8.5e-23 81.2 0.0 6.8e-22 78.3 0.0 2.3 3 0 0 3 3 3 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|284167492|ref|YP_003405770.1| - 0.00021 21.4 0.0 0.53 10.4 0.0 2.8 3 0 0 3 3 3 2 Cupredoxin-like domain CusF_Ec PF11604.8 gi|284167492|ref|YP_003405770.1| - 0.062 13.3 0.1 32 4.6 0.0 3.3 3 0 0 3 3 3 0 Copper binding periplasmic protein CusF DUF326 PF03860.16 gi|284167493|ref|YP_003405771.1| - 1.5e-05 24.8 49.5 0.0071 16.3 9.4 4.6 4 1 0 4 4 4 4 Domain of Unknown Function (DUF326) Thioredoxin_4 PF13462.6 gi|284167494|ref|YP_003405772.1| - 1e-24 87.6 0.0 1.2e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|284167494|ref|YP_003405772.1| - 8e-13 48.6 0.2 5.5e-07 29.6 0.1 2.2 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|284167494|ref|YP_003405772.1| - 1.8e-11 44.5 0.0 4.5e-11 43.2 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|284167494|ref|YP_003405772.1| - 2.7e-05 23.9 0.0 4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.20 gi|284167494|ref|YP_003405772.1| - 0.029 14.3 0.0 0.072 13.1 0.0 1.6 2 0 0 2 2 2 0 Thioredoxin UCR_Fe-S_N PF10399.9 gi|284167494|ref|YP_003405772.1| - 0.1 12.0 0.3 0.23 10.8 0.3 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Polysacc_deac_1 PF01522.21 gi|284167495|ref|YP_003405773.1| - 0.0035 17.2 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Response_reg PF00072.24 gi|284167498|ref|YP_003405776.1| - 6.7e-07 29.5 0.0 7.4e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HTH_20 PF12840.7 gi|284167499|ref|YP_003405777.1| - 1.8e-09 37.5 0.2 3.6e-09 36.6 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284167499|ref|YP_003405777.1| - 2.9e-06 26.7 0.0 4.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|284167499|ref|YP_003405777.1| - 0.00061 19.5 0.1 0.001 18.8 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain FUR PF01475.19 gi|284167499|ref|YP_003405777.1| - 0.00095 19.3 0.1 0.0013 18.9 0.1 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.7 gi|284167499|ref|YP_003405777.1| - 0.0012 18.7 0.2 0.0021 17.9 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|284167499|ref|YP_003405777.1| - 0.0012 18.7 0.1 0.002 17.9 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284167499|ref|YP_003405777.1| - 0.0018 18.1 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|284167499|ref|YP_003405777.1| - 0.0022 17.9 0.1 0.0044 16.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain CdiI_N PF18228.1 gi|284167499|ref|YP_003405777.1| - 0.0069 16.2 0.0 0.017 15.0 0.0 1.6 2 0 0 2 2 2 1 CdiI N-terminal domain HTH_27 PF13463.6 gi|284167499|ref|YP_003405777.1| - 0.0072 16.8 0.2 0.011 16.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|284167499|ref|YP_003405777.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|284167499|ref|YP_003405777.1| - 0.052 13.5 0.2 0.12 12.4 0.1 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|284167499|ref|YP_003405777.1| - 0.098 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Corona_NS3b PF03053.14 gi|284167500|ref|YP_003405778.1| - 0.0036 17.1 0.2 0.0049 16.7 0.1 1.3 1 1 0 1 1 1 1 ORF3b coronavirus protein Redoxin PF08534.10 gi|284167501|ref|YP_003405779.1| - 0.069 12.9 0.0 0.088 12.5 0.0 1.2 1 0 0 1 1 1 0 Redoxin Thioredoxin PF00085.20 gi|284167502|ref|YP_003405780.1| - 3.6e-12 46.2 0.0 4.3e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|284167502|ref|YP_003405780.1| - 1.2e-06 28.5 0.0 1.5e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|284167502|ref|YP_003405780.1| - 0.001 19.1 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|284167502|ref|YP_003405780.1| - 0.0035 17.8 0.0 0.1 13.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TrbC_Ftype PF09673.10 gi|284167502|ref|YP_003405780.1| - 0.0062 16.6 0.0 0.0071 16.4 0.0 1.1 1 0 0 1 1 1 1 Type-F conjugative transfer system pilin assembly protein HyaE PF07449.11 gi|284167502|ref|YP_003405780.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF836 PF05768.14 gi|284167502|ref|YP_003405780.1| - 0.15 12.5 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_8 PF13905.6 gi|284167502|ref|YP_003405780.1| - 0.17 12.2 0.0 2.2 8.7 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin-like OST3_OST6 PF04756.13 gi|284167502|ref|YP_003405780.1| - 0.24 10.7 0.0 0.32 10.3 0.0 1.2 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Carbam_trans_C PF16861.5 gi|284167503|ref|YP_003405781.1| - 3.6e-64 215.4 0.0 5.8e-64 214.8 0.0 1.3 1 0 0 1 1 1 1 Carbamoyltransferase C-terminus Carbam_trans_N PF02543.15 gi|284167503|ref|YP_003405781.1| - 7.3e-61 206.7 0.0 1e-60 206.2 0.0 1.1 1 0 0 1 1 1 1 Carbamoyltransferase N-terminus Peptidase_M22 PF00814.25 gi|284167503|ref|YP_003405781.1| - 0.0054 16.5 0.0 0.0099 15.6 0.0 1.5 1 0 0 1 1 1 1 Glycoprotease family Zip PF02535.22 gi|284167504|ref|YP_003405782.1| - 7.3e-14 51.7 24.0 2.2e-11 43.6 24.1 2.9 1 1 0 1 1 1 1 ZIP Zinc transporter Lactamase_B PF00753.27 gi|284167505|ref|YP_003405783.1| - 4.6e-20 72.5 8.6 1.2e-19 71.1 8.6 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|284167505|ref|YP_003405783.1| - 5.6e-13 49.3 0.0 5.5e-12 46.1 0.0 2.5 3 0 0 3 3 3 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|284167505|ref|YP_003405783.1| - 0.013 15.0 0.7 0.034 13.7 0.7 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|284167505|ref|YP_003405783.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Cu-oxidase_2 PF07731.14 gi|284167506|ref|YP_003405784.1| - 2.2e-20 72.8 2.9 2.5e-20 72.6 0.6 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|284167506|ref|YP_003405784.1| - 2.9e-15 56.3 0.6 3.4e-06 27.0 0.0 3.6 3 0 0 3 3 3 3 Multicopper oxidase Cu-oxidase PF00394.22 gi|284167506|ref|YP_003405784.1| - 0.062 13.4 0.0 0.86 9.7 0.0 2.5 2 1 0 2 2 2 0 Multicopper oxidase TrmB PF01978.19 gi|284167507|ref|YP_003405785.1| - 8.1e-16 57.7 0.0 1.1e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|284167507|ref|YP_003405785.1| - 1.8e-05 25.0 0.0 2.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_IclR PF09339.10 gi|284167507|ref|YP_003405785.1| - 0.00015 21.5 0.0 0.00029 20.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|284167507|ref|YP_003405785.1| - 0.00046 20.1 0.0 0.00079 19.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|284167507|ref|YP_003405785.1| - 0.00081 19.3 0.3 0.0019 18.1 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|284167507|ref|YP_003405785.1| - 0.0047 16.5 0.0 0.0075 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding UMPH-1 PF05822.12 gi|284167507|ref|YP_003405785.1| - 0.0061 16.1 0.2 0.0082 15.7 0.2 1.3 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_20 PF12840.7 gi|284167507|ref|YP_003405785.1| - 0.019 15.0 0.0 0.033 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 2OG-Fe_Oxy_2 PF10014.9 gi|284167507|ref|YP_003405785.1| - 0.027 14.3 0.3 0.034 13.9 0.3 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase HTH_23 PF13384.6 gi|284167507|ref|YP_003405785.1| - 0.03 14.1 0.0 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain RuvB_C PF05491.13 gi|284167507|ref|YP_003405785.1| - 0.033 14.1 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain DUF4423 PF14394.6 gi|284167507|ref|YP_003405785.1| - 0.059 13.1 0.1 0.22 11.2 0.0 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|284167507|ref|YP_003405785.1| - 0.08 13.5 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284167507|ref|YP_003405785.1| - 0.08 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family Rio2_N PF09202.11 gi|284167507|ref|YP_003405785.1| - 0.12 12.7 0.3 0.49 10.7 0.3 1.9 1 1 0 1 1 1 0 Rio2, N-terminal TauE PF01925.19 gi|284167508|ref|YP_003405786.1| - 4.5e-37 127.9 30.0 4.5e-37 127.9 30.0 1.8 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.26 gi|284167510|ref|YP_003405788.1| - 1.6e-41 142.1 1.7 2.3e-24 86.5 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family HTH_10 PF04967.12 gi|284167511|ref|YP_003405789.1| - 1.1e-18 66.7 0.0 1.9e-18 66.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain LacI PF00356.21 gi|284167511|ref|YP_003405789.1| - 0.0061 16.3 0.3 0.015 15.1 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Sigma70_r4 PF04545.16 gi|284167511|ref|YP_003405789.1| - 0.014 14.9 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|284167511|ref|YP_003405789.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|284167511|ref|YP_003405789.1| - 0.021 14.6 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_35 PF13693.6 gi|284167511|ref|YP_003405789.1| - 0.069 13.2 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|284167511|ref|YP_003405789.1| - 0.089 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|284167511|ref|YP_003405789.1| - 0.098 12.8 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|284167511|ref|YP_003405789.1| - 0.11 12.4 0.2 0.46 10.5 0.2 2.0 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family SpoIIID PF12116.8 gi|284167511|ref|YP_003405789.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D COX1 PF00115.20 gi|284167512|ref|YP_003405790.1| - 3.3e-06 26.2 0.5 3.3e-06 26.2 0.5 3.6 1 1 2 4 4 4 2 Cytochrome C and Quinol oxidase polypeptide I Copper-bind PF00127.20 gi|284167513|ref|YP_003405791.1| - 3.5e-10 40.2 0.1 6.1e-10 39.4 0.1 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Nop14 PF04147.12 gi|284167513|ref|YP_003405791.1| - 1.4 7.0 4.7 1.8 6.7 4.7 1.1 1 0 0 1 1 1 0 Nop14-like family Ion_trans_2 PF07885.16 gi|284167514|ref|YP_003405792.1| - 6.1e-09 35.7 5.9 6.1e-09 35.7 5.9 2.2 2 1 0 2 2 2 1 Ion channel SHOCT PF09851.9 gi|284167515|ref|YP_003405793.1| - 5.6e-08 32.3 5.6 8.5e-08 31.7 5.6 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|284167515|ref|YP_003405793.1| - 5.7e-05 23.1 4.0 7.6e-05 22.7 4.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Virul_fac_BrkB PF03631.15 gi|284167515|ref|YP_003405793.1| - 0.0024 17.5 2.7 0.003 17.2 2.7 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Phage_holin_3_6 PF07332.11 gi|284167515|ref|YP_003405793.1| - 0.0042 17.1 3.4 0.0061 16.6 3.4 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Sigma_reg_N PF13800.6 gi|284167515|ref|YP_003405793.1| - 0.013 15.7 0.6 5.5 7.3 0.6 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4381 PF14316.6 gi|284167515|ref|YP_003405793.1| - 0.085 13.1 0.1 0.085 13.1 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) TMEM208_SND2 PF05620.11 gi|284167515|ref|YP_003405793.1| - 0.21 11.4 2.0 0.82 9.4 0.0 2.0 1 1 1 2 2 2 0 SRP-independent targeting protein 2/TMEM208 Promethin PF16015.5 gi|284167515|ref|YP_003405793.1| - 0.5 10.3 8.2 2.2 8.3 3.2 2.1 2 0 0 2 2 2 0 Promethin FeoB_associated PF12669.7 gi|284167515|ref|YP_003405793.1| - 2.6 8.5 3.3 7.1 7.1 0.0 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein Nitroreductase PF00881.24 gi|284167516|ref|YP_003405794.1| - 7.9e-11 42.3 0.7 0.01 15.9 0.1 3.2 2 1 1 3 3 3 3 Nitroreductase family TM1586_NiRdase PF14512.6 gi|284167516|ref|YP_003405794.1| - 1.8e-07 30.9 0.0 5.1e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 Putative TM nitroreductase Spore_YtfJ PF09579.10 gi|284167517|ref|YP_003405795.1| - 1.8e-11 44.0 0.2 2.5e-11 43.6 0.2 1.2 1 0 0 1 1 1 1 Sporulation protein YtfJ (Spore_YtfJ) CPBP PF02517.16 gi|284167518|ref|YP_003405796.1| - 1.3e-12 47.9 9.0 1.3e-12 47.9 9.0 3.0 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease Beta-lactamase PF00144.24 gi|284167520|ref|YP_003405798.1| - 2.2e-64 217.8 0.7 3.3e-64 217.2 0.7 1.2 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 gi|284167520|ref|YP_003405798.1| - 0.003 17.2 0.0 0.049 13.2 0.0 2.1 1 1 0 1 1 1 1 Beta-lactamase enzyme family 2-oxoacid_dh PF00198.23 gi|284167521|ref|YP_003405799.1| - 1.1e-24 87.2 0.0 2.7e-14 53.2 0.0 2.0 2 0 0 2 2 2 2 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EF-hand_9 PF14658.6 gi|284167522|ref|YP_003405800.1| - 0.16 12.3 1.1 0.23 11.8 0.2 1.8 2 1 0 2 2 2 0 EF-hand domain DUF393 PF04134.12 gi|284167523|ref|YP_003405801.1| - 2.4e-16 61.1 0.0 2.7e-16 60.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 TrkA_N PF02254.18 gi|284167524|ref|YP_003405802.1| - 5.5e-42 142.7 9.9 2.2e-21 76.3 1.4 3.6 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|284167524|ref|YP_003405802.1| - 1.7e-21 75.8 2.1 7.2e-10 38.6 0.1 2.7 2 0 0 2 2 2 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|284167524|ref|YP_003405802.1| - 0.00022 21.6 0.7 0.00073 19.9 0.1 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|284167524|ref|YP_003405802.1| - 0.00054 19.4 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|284167524|ref|YP_003405802.1| - 0.0073 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Ion_trans_2 PF07885.16 gi|284167524|ref|YP_003405802.1| - 0.016 15.2 5.7 0.062 13.3 5.7 1.9 1 1 1 2 2 2 0 Ion channel Pyr_redox_3 PF13738.6 gi|284167524|ref|YP_003405802.1| - 0.023 14.0 0.1 0.054 12.7 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284167524|ref|YP_003405802.1| - 0.038 13.3 0.3 0.08 12.2 0.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|284167524|ref|YP_003405802.1| - 0.051 14.1 0.4 0.27 11.8 0.3 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|284167524|ref|YP_003405802.1| - 0.066 13.5 0.9 0.36 11.1 0.2 2.5 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain UCR_UQCRX_QCR9 PF05365.12 gi|284167524|ref|YP_003405802.1| - 0.28 11.2 1.0 0.67 9.9 1.0 1.6 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like PHO4 PF01384.20 gi|284167525|ref|YP_003405803.1| - 6.8e-45 153.6 27.3 6.8e-45 153.6 27.3 1.5 1 1 0 1 1 1 1 Phosphate transporter family Sulf_transp PF04143.14 gi|284167526|ref|YP_003405804.1| - 2.8e-08 33.7 8.5 2.8e-08 33.7 8.5 2.1 1 1 1 2 2 2 2 Sulphur transport Sulf_transp PF04143.14 gi|284167527|ref|YP_003405805.1| - 8.6e-13 48.5 18.0 6.5e-12 45.6 18.0 1.9 1 1 0 1 1 1 1 Sulphur transport Trp_oprn_chp PF09534.10 gi|284167527|ref|YP_003405805.1| - 1.8 8.3 11.8 0.019 14.8 4.0 1.7 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Rhodanese PF00581.20 gi|284167528|ref|YP_003405806.1| - 1e-10 42.0 0.0 1.8e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|284167528|ref|YP_003405806.1| - 3.5e-10 40.2 5.9 4.9e-10 39.7 4.8 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily TusA PF01206.17 gi|284167529|ref|YP_003405807.1| - 4.2e-21 74.6 0.0 4.7e-21 74.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|284167529|ref|YP_003405807.1| - 0.01 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|284167530|ref|YP_003405808.1| - 5.2e-52 175.8 0.4 6.9e-52 175.4 0.4 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|284167530|ref|YP_003405808.1| - 1.2e-06 28.9 0.0 4.2e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF2937 PF11157.8 gi|284167530|ref|YP_003405808.1| - 0.05 13.3 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) Thioredoxin PF00085.20 gi|284167531|ref|YP_003405809.1| - 8.6e-29 99.6 0.0 9.6e-29 99.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|284167531|ref|YP_003405809.1| - 4.3e-12 46.4 0.1 1.2e-10 41.8 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|284167531|ref|YP_003405809.1| - 5.3e-06 26.7 0.0 0.022 15.1 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|284167531|ref|YP_003405809.1| - 8.3e-06 25.8 0.0 1e-05 25.5 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.6 gi|284167531|ref|YP_003405809.1| - 1.7e-05 24.6 0.0 2e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|284167531|ref|YP_003405809.1| - 2.1e-05 24.4 0.2 5.8e-05 22.9 0.0 1.7 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.6 gi|284167531|ref|YP_003405809.1| - 2.9e-05 24.2 0.1 8e-05 22.7 0.1 1.7 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|284167531|ref|YP_003405809.1| - 7.8e-05 22.7 0.0 0.00032 20.7 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin domain HyaE PF07449.11 gi|284167531|ref|YP_003405809.1| - 0.0018 18.2 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE AhpC-TSA PF00578.21 gi|284167531|ref|YP_003405809.1| - 0.002 18.1 0.0 0.0038 17.1 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|284167531|ref|YP_003405809.1| - 0.0043 17.2 0.0 0.0065 16.7 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin OST3_OST6 PF04756.13 gi|284167531|ref|YP_003405809.1| - 0.005 16.2 0.0 0.0054 16.1 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|284167531|ref|YP_003405809.1| - 0.0074 16.7 0.0 0.013 15.9 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|284167531|ref|YP_003405809.1| - 0.039 13.6 0.0 0.075 12.7 0.0 1.5 1 1 1 2 2 2 0 Thioredoxin DIM1 PF02966.16 gi|284167531|ref|YP_003405809.1| - 0.12 12.2 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Mitosis protein DIM1 Spore_YabQ PF09578.10 gi|284167532|ref|YP_003405810.1| - 0.0037 17.4 1.3 0.0037 17.4 1.3 3.8 4 1 0 4 4 4 2 Spore cortex protein YabQ (Spore_YabQ) Replic_Relax PF13814.6 gi|284167533|ref|YP_003405811.1| - 0.062 13.3 0.4 0.11 12.6 0.3 1.6 1 1 0 1 1 1 0 Replication-relaxation Abhydrolase_5 PF12695.7 gi|284167533|ref|YP_003405811.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family Flavodoxin_5 PF12724.7 gi|284167535|ref|YP_003405813.1| - 2.4e-40 138.1 0.0 2.9e-40 137.8 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|284167535|ref|YP_003405813.1| - 5.6e-06 26.6 0.9 1.2e-05 25.6 0.8 1.7 1 1 0 1 1 1 1 Flavodoxin Flavodoxin_3 PF12641.7 gi|284167535|ref|YP_003405813.1| - 0.00013 21.7 0.1 0.00028 20.6 0.1 1.5 2 0 0 2 2 2 1 Flavodoxin domain PTS_IIB PF02302.17 gi|284167535|ref|YP_003405813.1| - 0.0018 18.9 0.4 0.0034 18.1 0.4 1.4 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit FMN_red PF03358.15 gi|284167535|ref|YP_003405813.1| - 0.023 14.5 0.0 0.051 13.3 0.1 1.7 1 1 1 2 2 2 0 NADPH-dependent FMN reductase DUF308 PF03729.13 gi|284167537|ref|YP_003405815.1| - 1.5e-13 50.8 36.1 1.7e-08 34.7 15.0 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF883 PF05957.13 gi|284167537|ref|YP_003405815.1| - 0.12 13.0 0.7 0.12 13.0 0.7 2.5 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF883) Methyltransf_11 PF08241.12 gi|284167538|ref|YP_003405816.1| - 1.5e-19 70.4 0.0 2.6e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284167538|ref|YP_003405816.1| - 4.5e-17 62.5 0.1 8.4e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284167538|ref|YP_003405816.1| - 2.1e-11 43.9 0.0 3.4e-11 43.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284167538|ref|YP_003405816.1| - 2.9e-08 33.3 0.0 4.6e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284167538|ref|YP_003405816.1| - 7.1e-07 29.2 0.0 3e-06 27.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284167538|ref|YP_003405816.1| - 1.5e-06 28.8 0.0 2.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|284167538|ref|YP_003405816.1| - 7.9e-05 21.9 0.0 0.00011 21.4 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|284167538|ref|YP_003405816.1| - 9.3e-05 22.4 0.0 0.00023 21.1 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.20 gi|284167538|ref|YP_003405816.1| - 0.00039 19.6 0.0 0.0005 19.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|284167538|ref|YP_003405816.1| - 0.0034 17.5 0.0 0.0038 17.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_2 PF00891.18 gi|284167538|ref|YP_003405816.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain MTS PF05175.14 gi|284167538|ref|YP_003405816.1| - 0.018 14.6 0.0 0.068 12.7 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_29 PF03141.16 gi|284167538|ref|YP_003405816.1| - 0.3 9.6 0.0 0.33 9.5 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase PAS_4 PF08448.10 gi|284167539|ref|YP_003405817.1| - 2.1e-28 98.7 2.1 7.4e-17 61.6 0.2 2.9 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|284167539|ref|YP_003405817.1| - 3.6e-28 98.3 0.0 8.9e-28 97.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|284167539|ref|YP_003405817.1| - 1.7e-17 63.5 1.7 2.9e-12 46.7 0.1 2.7 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|284167539|ref|YP_003405817.1| - 6.3e-15 55.7 0.2 3.4e-14 53.3 0.1 2.4 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.7 gi|284167539|ref|YP_003405817.1| - 6.2e-14 52.1 0.1 3.1e-08 33.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|284167539|ref|YP_003405817.1| - 4.6e-11 42.7 0.2 1.5e-06 28.2 0.0 2.6 2 0 0 2 2 2 2 PAS fold HisKA PF00512.25 gi|284167539|ref|YP_003405817.1| - 1.3e-09 38.0 0.1 1.3e-09 38.0 0.1 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|284167539|ref|YP_003405817.1| - 1.8e-07 31.9 0.0 9.2e-07 29.6 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|284167539|ref|YP_003405817.1| - 5.6e-07 29.4 0.1 5.2e-06 26.4 0.0 2.7 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|284167539|ref|YP_003405817.1| - 0.0001 22.6 0.0 0.00051 20.4 0.0 2.1 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.6 gi|284167539|ref|YP_003405817.1| - 0.00026 20.9 0.0 0.0007 19.5 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|284167539|ref|YP_003405817.1| - 0.005 16.7 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|284167539|ref|YP_003405817.1| - 0.056 13.4 0.3 0.31 11.0 0.0 2.4 3 0 0 3 3 2 0 Histidine kinase-like ATPase domain MEKHLA PF08670.11 gi|284167539|ref|YP_003405817.1| - 0.062 13.2 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 MEKHLA domain OmpH PF03938.14 gi|284167539|ref|YP_003405817.1| - 9.4 6.6 6.8 5 7.5 1.2 2.7 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) MafB19-deam PF14437.6 gi|284167540|ref|YP_003405818.1| - 4.3e-18 65.4 0.0 4.9e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|284167540|ref|YP_003405818.1| - 5e-14 52.0 0.0 6.7e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|284167540|ref|YP_003405818.1| - 0.00012 22.1 0.0 0.00018 21.6 0.0 1.2 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 NAD2 PF18782.1 gi|284167540|ref|YP_003405818.1| - 0.00076 19.6 0.0 0.0011 19.1 0.0 1.1 1 0 0 1 1 1 1 Novel AID APOBEC clade 2 NAD1 PF18778.1 gi|284167540|ref|YP_003405818.1| - 0.004 17.3 0.0 0.0055 16.8 0.0 1.1 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|284167540|ref|YP_003405818.1| - 0.0043 17.1 0.0 0.0058 16.7 0.0 1.1 1 0 0 1 1 1 1 APOBEC2 APOBEC_N PF08210.11 gi|284167540|ref|YP_003405818.1| - 0.013 15.4 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 APOBEC-like N-terminal domain Bd3614-deam PF14439.6 gi|284167540|ref|YP_003405818.1| - 0.081 13.0 0.3 0.21 11.6 0.2 1.6 1 1 1 2 2 2 0 Bd3614-like deaminase Lipase_GDSL_2 PF13472.6 gi|284167541|ref|YP_003405819.1| - 4e-09 37.1 1.0 8.8e-09 36.0 1.0 1.5 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family FBPase_glpX PF03320.13 gi|284167541|ref|YP_003405819.1| - 0.13 11.1 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Lipase_GDSL PF00657.22 gi|284167541|ref|YP_003405819.1| - 0.18 11.8 0.1 0.24 11.4 0.1 1.2 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase OrfB_Zn_ribbon PF07282.11 gi|284167542|ref|YP_003405820.1| - 1.1e-16 60.5 2.0 2.3e-16 59.5 2.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|284167542|ref|YP_003405820.1| - 3.9e-12 46.5 0.0 5e-11 42.9 0.0 2.2 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.7 gi|284167542|ref|YP_003405820.1| - 0.00011 22.1 0.2 0.00029 20.8 0.2 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|284167542|ref|YP_003405820.1| - 0.0012 18.9 1.3 0.0028 17.7 1.3 1.7 1 0 0 1 1 1 1 Acetyl-coA carboxylase zinc finger domain C1_2 PF03107.16 gi|284167542|ref|YP_003405820.1| - 0.0017 18.7 1.1 0.0036 17.6 1.1 1.5 1 0 0 1 1 1 1 C1 domain zf-NADH-PPase PF09297.11 gi|284167542|ref|YP_003405820.1| - 0.037 13.7 0.6 0.082 12.6 0.6 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284167542|ref|YP_003405820.1| - 0.074 12.6 4.1 0.08 12.5 2.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|284167542|ref|YP_003405820.1| - 0.15 12.0 1.0 0.33 10.9 1.0 1.7 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS DZR PF12773.7 gi|284167542|ref|YP_003405820.1| - 0.18 11.8 2.5 0.43 10.7 2.5 1.7 1 0 0 1 1 1 0 Double zinc ribbon Usp PF00582.26 gi|284167543|ref|YP_003405821.1| - 3.8e-23 82.5 2.3 4.2e-23 82.4 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AAA_12 PF13087.6 gi|284167544|ref|YP_003405822.1| - 1.3e-46 158.8 0.0 3.8e-45 154.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|284167544|ref|YP_003405822.1| - 5.8e-34 118.1 0.9 6.7e-16 58.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|284167544|ref|YP_003405822.1| - 1.8e-15 57.2 0.3 1.8e-15 57.2 0.3 2.1 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|284167544|ref|YP_003405822.1| - 3.4e-10 40.4 0.3 8e-10 39.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|284167544|ref|YP_003405822.1| - 3.8e-07 30.1 0.2 0.0017 18.1 0.0 3.0 1 1 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|284167544|ref|YP_003405822.1| - 0.00046 20.6 0.2 0.063 13.7 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain Helicase_RecD PF05127.14 gi|284167544|ref|YP_003405822.1| - 0.0012 18.7 0.1 0.0028 17.5 0.1 1.6 1 0 0 1 1 1 1 Helicase AAA_24 PF13479.6 gi|284167544|ref|YP_003405822.1| - 0.0015 18.3 0.0 0.0036 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|284167544|ref|YP_003405822.1| - 0.0015 17.8 0.0 0.0046 16.2 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|284167544|ref|YP_003405822.1| - 0.003 17.6 0.0 0.0055 16.7 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|284167544|ref|YP_003405822.1| - 0.013 15.8 0.1 0.037 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284167544|ref|YP_003405822.1| - 0.023 15.1 0.7 0.16 12.4 0.1 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) UvrD-helicase PF00580.21 gi|284167544|ref|YP_003405822.1| - 0.031 13.8 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain MR_MLE_C PF13378.6 gi|284167544|ref|YP_003405822.1| - 0.055 13.0 0.3 4.6 6.7 0.1 2.4 2 0 0 2 2 2 0 Enolase C-terminal domain-like PhoH PF02562.16 gi|284167544|ref|YP_003405822.1| - 0.11 11.9 0.0 4 6.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DAP3 PF10236.9 gi|284167544|ref|YP_003405822.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Mg_chelatase PF01078.21 gi|284167544|ref|YP_003405822.1| - 0.17 11.3 0.0 0.35 10.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.14 gi|284167544|ref|YP_003405822.1| - 0.18 10.9 0.0 2.4 7.2 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase NAD_binding_2 PF03446.15 gi|284167544|ref|YP_003405822.1| - 0.29 11.3 1.2 0.82 9.8 0.3 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Copper-bind PF00127.20 gi|284167545|ref|YP_003405823.1| - 0.00046 20.6 0.0 0.00087 19.7 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|284167545|ref|YP_003405823.1| - 0.011 15.6 3.8 0.019 14.8 3.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GRP PF07172.11 gi|284167545|ref|YP_003405823.1| - 0.12 13.0 26.3 1.1 9.9 7.8 2.3 2 0 0 2 2 2 0 Glycine rich protein family zinc_ribbon_9 PF14369.6 gi|284167547|ref|YP_003405825.1| - 8.1e-05 22.8 2.1 0.14 12.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon DZR PF12773.7 gi|284167547|ref|YP_003405825.1| - 0.00012 22.1 0.3 0.00017 21.6 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|284167547|ref|YP_003405825.1| - 0.00038 19.8 1.9 0.00061 19.1 1.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|284167547|ref|YP_003405825.1| - 0.00043 19.9 1.1 0.00063 19.4 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TM2 PF05154.16 gi|284167547|ref|YP_003405825.1| - 0.0079 16.5 0.5 0.014 15.7 0.5 1.4 1 0 0 1 1 1 1 TM2 domain zinc_ribbon_15 PF17032.5 gi|284167547|ref|YP_003405825.1| - 0.0084 16.8 0.1 0.011 16.5 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon family LpxB PF02684.15 gi|284167547|ref|YP_003405825.1| - 0.06 12.2 0.1 0.074 11.9 0.1 1.1 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase GTA_holin_3TM PF11351.8 gi|284167547|ref|YP_003405825.1| - 0.1 13.1 1.3 0.16 12.5 1.3 1.3 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release DUF2628 PF10947.8 gi|284167547|ref|YP_003405825.1| - 0.21 12.0 4.4 0.32 11.4 4.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) TerY_C PF15616.6 gi|284167547|ref|YP_003405825.1| - 0.22 11.7 1.1 0.88 9.7 1.1 1.9 1 1 0 1 1 1 0 TerY-C metal binding domain SNARE_assoc PF09335.11 gi|284167548|ref|YP_003405826.1| - 9.2e-12 45.5 7.8 2.9e-11 43.9 7.8 1.9 1 1 0 1 1 1 1 SNARE associated Golgi protein TetR_C_6 PF13977.6 gi|284167549|ref|YP_003405827.1| - 1.1e-11 45.0 0.3 1.5e-11 44.6 0.3 1.2 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|284167549|ref|YP_003405827.1| - 1e-08 34.8 0.0 1.8e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 gi|284167549|ref|YP_003405827.1| - 0.00051 20.1 0.5 0.0022 18.0 0.1 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|284167549|ref|YP_003405827.1| - 0.00079 19.7 0.2 0.00079 19.7 0.2 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|284167549|ref|YP_003405827.1| - 0.00083 19.7 0.0 0.0016 18.7 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|284167549|ref|YP_003405827.1| - 0.00084 19.5 0.1 0.0015 18.8 0.1 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|284167549|ref|YP_003405827.1| - 0.0077 16.5 0.2 0.014 15.7 0.2 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|284167549|ref|YP_003405827.1| - 0.065 13.3 0.2 0.12 12.5 0.1 1.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|284167549|ref|YP_003405827.1| - 0.078 13.0 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain MMPL PF03176.15 gi|284167550|ref|YP_003405828.1| - 1.1e-38 133.1 42.0 1.1e-22 80.4 11.5 3.5 3 1 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|284167550|ref|YP_003405828.1| - 2.4e-08 33.9 9.1 0.0011 18.8 0.9 2.5 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation ACR_tran PF00873.19 gi|284167550|ref|YP_003405828.1| - 0.00034 18.4 20.5 0.0011 16.8 6.2 2.3 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family SecD_SecF PF02355.16 gi|284167550|ref|YP_003405828.1| - 0.00078 18.9 3.0 0.00078 18.9 3.0 2.9 2 1 0 2 2 2 1 Protein export membrane protein Patched PF02460.18 gi|284167550|ref|YP_003405828.1| - 0.0025 16.0 37.7 0.0065 14.6 4.9 4.1 4 2 2 6 6 6 4 Patched family EF-hand_5 PF13202.6 gi|284167550|ref|YP_003405828.1| - 0.047 13.2 0.5 0.11 12.0 0.5 1.7 1 0 0 1 1 1 0 EF hand DUF2749 PF10907.8 gi|284167550|ref|YP_003405828.1| - 0.2 11.9 0.9 35 4.6 0.0 3.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) DUF4604 PF15377.6 gi|284167550|ref|YP_003405828.1| - 7.7 6.9 10.9 18 5.7 3.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4604) Ferrochelatase PF00762.19 gi|284167551|ref|YP_003405829.1| - 5.2e-68 229.5 0.0 6.3e-68 229.2 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase Glyco_trans_4_4 PF13579.6 gi|284167551|ref|YP_003405829.1| - 0.00051 20.5 0.3 0.024 15.1 0.1 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|284167551|ref|YP_003405829.1| - 0.029 14.4 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Amino_oxidase PF01593.24 gi|284167552|ref|YP_003405830.1| - 6.3e-46 157.6 0.3 7.6e-46 157.3 0.3 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|284167552|ref|YP_003405830.1| - 3.1e-11 43.3 0.1 8.4e-11 42.0 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|284167552|ref|YP_003405830.1| - 0.0042 17.1 0.8 2.1 8.3 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|284167552|ref|YP_003405830.1| - 0.0058 15.9 0.4 0.0089 15.3 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|284167552|ref|YP_003405830.1| - 0.025 14.2 0.5 5.1 6.7 0.0 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|284167552|ref|YP_003405830.1| - 0.032 13.5 0.8 0.25 10.5 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284167552|ref|YP_003405830.1| - 0.033 13.8 6.0 0.4 10.2 6.0 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase URO-D PF01208.17 gi|284167553|ref|YP_003405831.1| - 2.6e-104 349.1 0.0 2.9e-104 348.9 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) YdjM PF04307.14 gi|284167554|ref|YP_003405832.1| - 1.2e-05 24.7 15.0 0.00015 21.1 15.0 2.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase SNARE_assoc PF09335.11 gi|284167554|ref|YP_003405832.1| - 0.44 11.0 5.2 0.93 10.0 0.2 2.8 3 0 0 3 3 3 0 SNARE associated Golgi protein Usp PF00582.26 gi|284167556|ref|YP_003405834.1| - 2.1e-31 109.3 1.4 2.5e-31 109.1 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|284167557|ref|YP_003405835.1| - 8.2e-31 107.4 2.2 9.2e-31 107.2 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|284167557|ref|YP_003405835.1| - 0.019 15.0 0.0 0.027 14.5 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase DUF1656 PF07869.12 gi|284167558|ref|YP_003405836.1| - 0.03 14.3 1.2 0.07 13.2 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1656) Usp PF00582.26 gi|284167559|ref|YP_003405837.1| - 2.8e-55 186.7 13.1 1.1e-32 113.5 2.5 2.1 2 0 0 2 2 2 2 Universal stress protein family DAGK_cat PF00781.24 gi|284167559|ref|YP_003405837.1| - 0.12 12.0 0.6 0.29 10.8 0.1 1.9 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain Usp PF00582.26 gi|284167560|ref|YP_003405838.1| - 9.6e-14 52.1 0.0 1.2e-13 51.8 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family Phage_int_SAM_5 PF13102.6 gi|284167561|ref|YP_003405839.1| - 6.1e-07 29.7 0.0 1.2e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_integrase PF00589.22 gi|284167561|ref|YP_003405839.1| - 0.0017 18.2 0.0 0.02 14.7 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|284167561|ref|YP_003405839.1| - 0.0032 17.9 0.0 0.017 15.6 0.0 2.2 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284167561|ref|YP_003405839.1| - 0.006 16.8 0.0 0.024 14.9 0.0 2.1 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Amidase PF01425.21 gi|284167562|ref|YP_003405840.1| - 2.3e-109 366.4 0.3 2.9e-109 366.0 0.3 1.0 1 0 0 1 1 1 1 Amidase Lactamase_B PF00753.27 gi|284167563|ref|YP_003405841.1| - 4.8e-19 69.1 1.3 7.2e-19 68.6 1.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284167563|ref|YP_003405841.1| - 0.03 13.8 0.4 0.051 13.1 0.4 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain EHN PF06441.12 gi|284167564|ref|YP_003405842.1| - 3.8e-35 120.5 0.1 7.4e-35 119.6 0.1 1.5 1 0 0 1 1 1 1 Epoxide hydrolase N terminus Abhydrolase_1 PF00561.20 gi|284167564|ref|YP_003405842.1| - 1.8e-16 60.6 0.1 4.3e-16 59.3 0.1 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF3000 PF11452.8 gi|284167564|ref|YP_003405842.1| - 0.035 13.6 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3000) MaoC_dehydratas PF01575.19 gi|284167565|ref|YP_003405843.1| - 7.6e-21 73.9 0.1 1e-20 73.6 0.1 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|284167565|ref|YP_003405843.1| - 4.3e-11 43.1 0.7 9.2e-11 42.0 0.7 1.5 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase TRAM PF01938.20 gi|284167565|ref|YP_003405843.1| - 0.11 12.6 0.0 0.33 11.0 0.0 1.9 2 0 0 2 2 2 0 TRAM domain Acyl-CoA_dh_1 PF00441.24 gi|284167566|ref|YP_003405844.1| - 6e-50 169.4 2.2 8.6e-50 168.8 2.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284167566|ref|YP_003405844.1| - 1.2e-35 122.6 0.6 3.9e-35 120.9 0.1 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284167566|ref|YP_003405844.1| - 1.7e-25 89.8 2.9 2.7e-25 89.2 2.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284167566|ref|YP_003405844.1| - 9.6e-24 83.4 0.0 1.7e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF743 PF05332.11 gi|284167566|ref|YP_003405844.1| - 0.058 13.5 0.3 0.13 12.3 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF743) MeaB PF03308.16 gi|284167567|ref|YP_003405845.1| - 7.6e-90 300.5 5.0 1e-89 300.1 5.0 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|284167567|ref|YP_003405845.1| - 2.6e-06 27.1 1.3 3.2e-05 23.6 1.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|284167567|ref|YP_003405845.1| - 1.7e-05 24.6 0.4 6.9e-05 22.6 0.4 1.9 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|284167567|ref|YP_003405845.1| - 4.7e-05 23.3 0.0 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|284167567|ref|YP_003405845.1| - 7.9e-05 22.5 0.0 0.00019 21.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|284167567|ref|YP_003405845.1| - 9.2e-05 22.4 0.1 0.00026 21.0 0.1 1.8 1 0 0 1 1 1 1 NTPase GTP_EFTU PF00009.27 gi|284167567|ref|YP_003405845.1| - 0.00017 21.2 0.0 0.47 10.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.6 gi|284167567|ref|YP_003405845.1| - 0.00042 20.8 0.0 0.0097 16.5 0.1 2.5 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|284167567|ref|YP_003405845.1| - 0.0005 20.6 0.1 0.00084 19.9 0.1 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|284167567|ref|YP_003405845.1| - 0.001 19.5 0.2 0.003 17.9 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284167567|ref|YP_003405845.1| - 0.0013 19.0 0.0 0.0039 17.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284167567|ref|YP_003405845.1| - 0.0029 17.3 0.1 0.0072 16.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain TrwB_AAD_bind PF10412.9 gi|284167567|ref|YP_003405845.1| - 0.0038 16.2 0.0 0.0078 15.2 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 gi|284167567|ref|YP_003405845.1| - 0.0043 16.4 0.0 0.0089 15.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.14 gi|284167567|ref|YP_003405845.1| - 0.007 16.3 0.0 0.033 14.1 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|284167567|ref|YP_003405845.1| - 0.011 16.0 1.5 0.015 15.5 0.2 1.9 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|284167567|ref|YP_003405845.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain PRK PF00485.18 gi|284167567|ref|YP_003405845.1| - 0.018 14.8 0.1 0.053 13.2 0.1 1.8 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.23 gi|284167567|ref|YP_003405845.1| - 0.019 15.1 0.0 0.063 13.4 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase KTI12 PF08433.10 gi|284167567|ref|YP_003405845.1| - 0.021 14.3 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RsgA_GTPase PF03193.16 gi|284167567|ref|YP_003405845.1| - 0.024 14.5 0.0 0.08 12.8 0.0 2.0 3 0 0 3 3 1 0 RsgA GTPase ParA PF10609.9 gi|284167567|ref|YP_003405845.1| - 0.026 14.0 1.3 0.46 9.9 0.1 2.2 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA_17 PF13207.6 gi|284167567|ref|YP_003405845.1| - 0.027 14.9 0.0 0.078 13.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|284167567|ref|YP_003405845.1| - 0.039 13.9 0.0 0.099 12.6 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|284167567|ref|YP_003405845.1| - 0.041 13.5 0.3 0.2 11.2 0.0 2.3 2 1 1 3 3 3 0 AAA domain Ploopntkinase3 PF18751.1 gi|284167567|ref|YP_003405845.1| - 0.042 13.7 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_19 PF13245.6 gi|284167567|ref|YP_003405845.1| - 0.056 13.8 0.2 0.18 12.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|284167567|ref|YP_003405845.1| - 0.064 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|284167567|ref|YP_003405845.1| - 0.073 13.2 0.2 0.19 11.9 0.1 1.7 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|284167567|ref|YP_003405845.1| - 0.096 12.0 0.6 0.15 11.4 0.1 1.6 2 0 0 2 2 2 0 KaiC CbiA PF01656.23 gi|284167567|ref|YP_003405845.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF815 PF05673.13 gi|284167567|ref|YP_003405845.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Viral_helicase1 PF01443.18 gi|284167567|ref|YP_003405845.1| - 0.22 11.3 0.0 0.36 10.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase B12-binding PF02310.19 gi|284167568|ref|YP_003405846.1| - 2.1e-22 79.4 0.9 2.4e-22 79.2 0.9 1.1 1 0 0 1 1 1 1 B12 binding domain BcrAD_BadFG PF01869.20 gi|284167568|ref|YP_003405846.1| - 0.014 14.9 0.0 0.024 14.1 0.0 1.4 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Staph_haemo PF05480.11 gi|284167568|ref|YP_003405846.1| - 0.055 13.3 0.1 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 Staphylococcus haemolytic protein Peripla_BP_6 PF13458.6 gi|284167568|ref|YP_003405846.1| - 0.13 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein Acetyltransf_1 PF00583.25 gi|284167569|ref|YP_003405847.1| - 1.9e-15 57.2 0.0 2.4e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|284167569|ref|YP_003405847.1| - 3.9e-15 55.9 0.0 5.2e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|284167569|ref|YP_003405847.1| - 3.3e-13 49.9 0.0 4.7e-13 49.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|284167569|ref|YP_003405847.1| - 1.9e-09 37.9 0.0 2.7e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|284167569|ref|YP_003405847.1| - 4.2e-07 29.8 0.0 6.5e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|284167569|ref|YP_003405847.1| - 1e-06 28.9 0.0 2.7e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|284167569|ref|YP_003405847.1| - 2.6e-05 24.9 0.1 3.2e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|284167569|ref|YP_003405847.1| - 0.0022 18.1 0.0 0.0042 17.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|284167569|ref|YP_003405847.1| - 0.011 15.9 0.2 0.016 15.4 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF2156 PF09924.9 gi|284167569|ref|YP_003405847.1| - 0.11 11.4 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) MM_CoA_mutase PF01642.22 gi|284167570|ref|YP_003405848.1| - 5.4e-214 711.5 0.1 6.1e-214 711.3 0.1 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|284167570|ref|YP_003405848.1| - 0.0016 17.0 0.1 0.0028 16.2 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) Usp PF00582.26 gi|284167571|ref|YP_003405849.1| - 9.1e-23 81.3 0.4 1.1e-22 81.0 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family CHZ PF09649.10 gi|284167571|ref|YP_003405849.1| - 0.12 11.8 0.1 0.12 11.8 0.1 1.9 3 0 0 3 3 3 0 Histone chaperone domain CHZ 7TMR-DISM_7TM PF07695.11 gi|284167572|ref|YP_003405850.1| - 0.078 12.9 1.6 0.08 12.8 1.6 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling SSF PF00474.17 gi|284167573|ref|YP_003405851.1| - 1.2e-41 143.0 34.0 1.2e-41 143.0 34.0 2.0 2 0 0 2 2 2 1 Sodium:solute symporter family DUF5337 PF17272.2 gi|284167573|ref|YP_003405851.1| - 0.012 15.5 4.7 0.012 15.5 4.7 2.8 2 0 0 2 2 2 0 Family of unknown function (DUF5337) DUF4212 PF13937.6 gi|284167574|ref|YP_003405852.1| - 0.00023 21.5 3.8 0.00027 21.3 3.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF997 PF06196.12 gi|284167574|ref|YP_003405852.1| - 0.0011 18.9 4.0 0.0014 18.6 4.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF997) DUF2207 PF09972.9 gi|284167574|ref|YP_003405852.1| - 0.15 10.8 1.6 0.16 10.7 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3087 PF11286.8 gi|284167574|ref|YP_003405852.1| - 0.2 11.1 0.2 0.22 11.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) DUF3311 PF11755.8 gi|284167574|ref|YP_003405852.1| - 0.4 10.6 9.8 0.76 9.8 9.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3311) DUF4233 PF14017.6 gi|284167574|ref|YP_003405852.1| - 0.5 10.7 7.1 2.3 8.6 7.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) HAD_2 PF13419.6 gi|284167575|ref|YP_003405853.1| - 2.2e-12 47.4 0.0 2.8e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|284167575|ref|YP_003405853.1| - 1.4e-06 28.8 0.0 2.3e-06 28.0 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|284167575|ref|YP_003405853.1| - 0.0013 18.8 0.0 0.065 13.3 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|284167575|ref|YP_003405853.1| - 0.0027 17.8 0.1 0.0094 16.0 0.1 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like DehI PF10778.9 gi|284167576|ref|YP_003405854.1| - 5.6e-58 195.2 0.0 4.9e-48 163.0 0.1 2.1 2 0 0 2 2 2 2 Halocarboxylic acid dehydrogenase DehI AMP-binding PF00501.28 gi|284167577|ref|YP_003405855.1| - 4e-83 279.4 0.0 4.8e-83 279.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|284167577|ref|YP_003405855.1| - 2.4e-22 79.7 0.2 5.2e-22 78.6 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain 4HBT_2 PF13279.6 gi|284167578|ref|YP_003405856.1| - 1.2e-08 35.5 0.0 1.4e-08 35.3 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|284167578|ref|YP_003405856.1| - 9.6e-08 32.3 0.1 1.4e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 3HCDH_N PF02737.18 gi|284167579|ref|YP_003405857.1| - 2.2e-60 203.6 0.3 2.7e-60 203.3 0.3 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|284167579|ref|YP_003405857.1| - 8.9e-34 116.0 0.1 1.1e-32 112.5 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|284167579|ref|YP_003405857.1| - 0.0012 19.0 0.6 0.003 17.7 0.3 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|284167579|ref|YP_003405857.1| - 0.0026 18.3 0.6 0.017 15.7 0.2 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|284167579|ref|YP_003405857.1| - 0.0083 16.1 0.0 0.017 15.1 0.0 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|284167579|ref|YP_003405857.1| - 0.011 15.1 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|284167579|ref|YP_003405857.1| - 0.014 15.0 0.5 0.084 12.4 0.3 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|284167579|ref|YP_003405857.1| - 0.046 12.9 0.3 0.1 11.8 0.3 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase MYEOV2 PF15004.6 gi|284167579|ref|YP_003405857.1| - 0.064 13.7 1.3 0.17 12.4 1.3 1.8 1 0 0 1 1 1 0 Myeloma-overexpressed-like DapB_N PF01113.20 gi|284167579|ref|YP_003405857.1| - 1.3 9.1 4.2 4.3 7.5 4.1 2.1 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Acyl-CoA_dh_1 PF00441.24 gi|284167580|ref|YP_003405858.1| - 6.8e-53 178.9 1.5 9.5e-53 178.4 1.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284167580|ref|YP_003405858.1| - 1.7e-33 115.6 0.1 3.6e-33 114.6 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284167580|ref|YP_003405858.1| - 6.2e-26 90.4 0.0 1.3e-25 89.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|284167580|ref|YP_003405858.1| - 1.2e-24 87.1 3.9 2.1e-24 86.3 3.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Bac_luciferase PF00296.20 gi|284167581|ref|YP_003405859.1| - 2e-66 224.6 5.8 2.5e-66 224.3 5.8 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase IclR PF01614.18 gi|284167582|ref|YP_003405860.1| - 2.5e-34 117.9 0.0 4.7e-34 117.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167582|ref|YP_003405860.1| - 1.4e-12 47.2 0.0 4.2e-12 45.7 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284167582|ref|YP_003405860.1| - 2.5e-06 26.9 0.0 6.4e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|284167582|ref|YP_003405860.1| - 2.8e-06 27.1 0.0 8.6e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|284167582|ref|YP_003405860.1| - 7.3e-06 25.8 0.0 8.9e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284167582|ref|YP_003405860.1| - 3e-05 23.8 0.0 0.00014 21.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|284167582|ref|YP_003405860.1| - 0.00062 20.2 0.4 0.0051 17.3 0.0 2.5 3 0 0 3 3 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|284167582|ref|YP_003405860.1| - 0.0012 19.0 0.1 0.0054 16.9 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|284167582|ref|YP_003405860.1| - 0.0014 18.7 0.3 0.035 14.2 0.0 2.7 3 0 0 3 3 3 1 Helix-turn-helix domain DUF742 PF05331.11 gi|284167582|ref|YP_003405860.1| - 0.0019 18.0 0.0 0.0042 16.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF742) HTH_45 PF14947.6 gi|284167582|ref|YP_003405860.1| - 0.0048 16.9 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|284167582|ref|YP_003405860.1| - 0.018 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|284167582|ref|YP_003405860.1| - 0.025 14.5 0.0 0.067 13.1 0.0 1.8 1 1 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|284167582|ref|YP_003405860.1| - 0.039 13.8 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|284167582|ref|YP_003405860.1| - 0.041 13.7 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_40 PF14493.6 gi|284167582|ref|YP_003405860.1| - 0.053 14.0 0.1 0.28 11.7 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|284167582|ref|YP_003405860.1| - 0.082 12.9 0.0 0.28 11.2 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain PCI PF01399.27 gi|284167582|ref|YP_003405860.1| - 0.092 13.3 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 PCI domain PEPcase PF00311.17 gi|284167583|ref|YP_003405861.1| - 2.1e-240 800.1 0.0 2.9e-240 799.6 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|284167583|ref|YP_003405861.1| - 1.4e-05 23.8 0.0 2.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.8 gi|284167583|ref|YP_003405861.1| - 0.038 13.8 0.7 0.22 11.4 0.3 2.3 2 0 0 2 2 2 0 Transcriptional activator TraM EamA PF00892.20 gi|284167584|ref|YP_003405862.1| - 7.7e-26 90.9 29.6 9.1e-16 58.3 15.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|284167584|ref|YP_003405862.1| - 0.0054 16.8 0.8 0.0054 16.8 0.8 2.2 2 0 0 2 2 2 1 Putative transmembrane family 234 YfzA PF14118.6 gi|284167584|ref|YP_003405862.1| - 0.074 13.4 0.2 0.31 11.5 0.1 2.1 2 0 0 2 2 2 0 YfzA-like protein DUF5345 PF17280.2 gi|284167584|ref|YP_003405862.1| - 0.18 11.8 0.1 0.18 11.8 0.1 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5345) Aldo_ket_red PF00248.21 gi|284167585|ref|YP_003405863.1| - 2.8e-50 171.2 0.0 6.2e-48 163.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family RecG_wedge PF17191.4 gi|284167585|ref|YP_003405863.1| - 0.21 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 RecG wedge domain GFO_IDH_MocA PF01408.22 gi|284167586|ref|YP_003405864.1| - 2.3e-23 83.3 1.2 2.3e-23 83.3 1.2 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF364 PF04016.12 gi|284167586|ref|YP_003405864.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative heavy-metal chelation F420_oxidored PF03807.17 gi|284167586|ref|YP_003405864.1| - 0.12 13.0 0.4 0.78 10.4 0.1 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|284167587|ref|YP_003405865.1| - 2.1e-22 80.2 0.0 3.9e-22 79.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284167587|ref|YP_003405865.1| - 5.6e-14 52.1 0.0 1.2e-13 51.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|284167587|ref|YP_003405865.1| - 2.8e-05 24.6 0.0 0.00011 22.8 0.0 2.1 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|284167587|ref|YP_003405865.1| - 0.00024 21.4 0.0 0.001 19.3 0.0 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|284167587|ref|YP_003405865.1| - 0.00068 20.3 0.0 0.0014 19.3 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ox_reductase_C PF08635.10 gi|284167587|ref|YP_003405865.1| - 0.0038 16.9 0.0 0.048 13.3 0.0 2.1 1 1 0 1 1 1 1 Putative oxidoreductase C terminal domain AP_endonuc_2 PF01261.24 gi|284167588|ref|YP_003405866.1| - 8.1e-20 71.2 1.2 1e-19 70.8 0.9 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|284167588|ref|YP_003405866.1| - 0.025 14.3 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus Pyr_redox_2 PF07992.14 gi|284167589|ref|YP_003405867.1| - 2.5e-39 135.3 0.4 3.1e-39 135.0 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284167589|ref|YP_003405867.1| - 7.1e-10 39.3 0.2 5.4e-08 33.3 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|284167589|ref|YP_003405867.1| - 7.8e-05 22.7 0.7 0.63 10.0 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|284167589|ref|YP_003405867.1| - 0.027 13.8 0.4 2 7.6 0.1 2.5 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1641 PF07849.11 gi|284167589|ref|YP_003405867.1| - 0.15 12.0 0.2 3.4 7.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1641) Spore_SspJ PF09575.10 gi|284167589|ref|YP_003405867.1| - 0.23 11.8 0.1 0.76 10.2 0.1 1.8 1 0 0 1 1 1 0 Small spore protein J (Spore_SspJ) ADH_N PF08240.12 gi|284167590|ref|YP_003405868.1| - 3.1e-29 101.0 0.8 2e-28 98.4 0.5 2.2 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284167590|ref|YP_003405868.1| - 4.9e-17 62.1 0.0 7.3e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284167590|ref|YP_003405868.1| - 2.7e-08 34.9 0.0 5.2e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|284167590|ref|YP_003405868.1| - 0.0057 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Methyltransf_24 PF13578.6 gi|284167590|ref|YP_003405868.1| - 0.024 15.7 0.0 0.066 14.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain TPP_enzyme_N PF02776.18 gi|284167591|ref|YP_003405869.1| - 6.4e-59 198.4 0.1 4e-57 192.6 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|284167591|ref|YP_003405869.1| - 1.9e-43 147.5 0.0 5e-43 146.1 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|284167591|ref|YP_003405869.1| - 8.2e-41 139.3 0.0 1.2e-38 132.3 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PNTB PF02233.16 gi|284167591|ref|YP_003405869.1| - 0.0099 14.8 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit DUF3584 PF12128.8 gi|284167591|ref|YP_003405869.1| - 0.21 9.1 0.0 0.29 8.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HalOD1 PF18545.1 gi|284167592|ref|YP_003405870.1| - 1.5e-20 73.2 0.4 1.8e-20 73.0 0.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4907 PF16250.5 gi|284167592|ref|YP_003405870.1| - 0.064 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4907) Lactamase_B_2 PF12706.7 gi|284167593|ref|YP_003405871.1| - 1.2e-19 70.6 0.6 1.6e-19 70.3 0.6 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|284167593|ref|YP_003405871.1| - 1.2e-11 44.7 0.0 1.7e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|284167593|ref|YP_003405871.1| - 0.043 13.8 12.3 0.19 11.7 12.1 2.2 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Bac_luciferase PF00296.20 gi|284167594|ref|YP_003405872.1| - 3.4e-50 171.2 9.3 3.9e-50 171.1 9.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase E3_binding PF02817.17 gi|284167594|ref|YP_003405872.1| - 0.11 12.9 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 e3 binding domain MR_MLE_C PF13378.6 gi|284167595|ref|YP_003405873.1| - 2.9e-61 206.8 0.6 4.3e-61 206.3 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284167595|ref|YP_003405873.1| - 2.7e-18 66.3 0.0 5.8e-18 65.2 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_N PF03952.16 gi|284167595|ref|YP_003405873.1| - 0.0073 16.5 0.0 0.02 15.1 0.0 1.7 2 0 0 2 2 2 1 Enolase, N-terminal domain Dus PF01207.17 gi|284167595|ref|YP_003405873.1| - 0.18 10.9 0.0 12 4.9 0.0 2.1 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) ADH_N PF08240.12 gi|284167596|ref|YP_003405874.1| - 1.2e-30 105.6 0.7 2.5e-30 104.5 0.7 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284167596|ref|YP_003405874.1| - 1.7e-25 89.5 0.0 2.7e-25 88.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|284167596|ref|YP_003405874.1| - 0.0003 21.8 0.0 0.00052 21.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284167596|ref|YP_003405874.1| - 0.046 13.1 0.0 0.079 12.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_24 PF13578.6 gi|284167596|ref|YP_003405874.1| - 0.1 13.6 0.0 0.23 12.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.22 gi|284167597|ref|YP_003405875.1| - 3.7e-140 467.5 0.3 4.4e-140 467.3 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Wtap PF17098.5 gi|284167597|ref|YP_003405875.1| - 0.18 11.8 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 WTAP/Mum2p family Syntaxin-6_N PF09177.11 gi|284167597|ref|YP_003405875.1| - 0.19 12.3 0.4 4.1 8.0 0.2 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal IclR PF01614.18 gi|284167598|ref|YP_003405876.1| - 3.6e-37 127.1 0.0 5.9e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167598|ref|YP_003405876.1| - 4.1e-07 29.7 1.2 4e-06 26.5 0.1 2.5 3 0 0 3 3 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284167598|ref|YP_003405876.1| - 0.00024 20.9 0.2 0.00045 20.0 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_40 PF14493.6 gi|284167598|ref|YP_003405876.1| - 0.0011 19.4 0.2 0.0034 17.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284167598|ref|YP_003405876.1| - 0.0023 17.8 0.1 0.039 13.8 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|284167598|ref|YP_003405876.1| - 0.0033 17.3 0.0 0.0071 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284167598|ref|YP_003405876.1| - 0.0048 16.4 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|284167598|ref|YP_003405876.1| - 0.005 16.6 0.5 0.014 15.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284167598|ref|YP_003405876.1| - 0.013 15.2 0.1 0.036 13.8 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain dCache_3 PF14827.6 gi|284167598|ref|YP_003405876.1| - 0.018 14.7 0.0 0.039 13.6 0.0 1.5 1 1 0 1 1 1 0 Double sensory domain of two-component sensor kinase Penicillinase_R PF03965.16 gi|284167598|ref|YP_003405876.1| - 0.018 15.4 0.0 0.044 14.1 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.6 gi|284167598|ref|YP_003405876.1| - 0.021 15.0 0.0 0.04 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|284167598|ref|YP_003405876.1| - 0.049 13.7 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|284167598|ref|YP_003405876.1| - 0.052 13.1 0.0 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family TrmB PF01978.19 gi|284167598|ref|YP_003405876.1| - 0.08 12.8 0.0 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|284167598|ref|YP_003405876.1| - 0.088 12.8 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 HTH domain DUF1803 PF08820.10 gi|284167598|ref|YP_003405876.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Glu_dehyd_C PF16912.5 gi|284167599|ref|YP_003405877.1| - 2.4e-87 291.9 0.0 2.9e-87 291.6 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|284167599|ref|YP_003405877.1| - 4e-08 33.1 0.0 6.5e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284167599|ref|YP_003405877.1| - 3.5e-06 27.0 0.0 7.2e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|284167599|ref|YP_003405877.1| - 0.0004 20.3 0.0 0.00073 19.4 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N_2 PF13602.6 gi|284167599|ref|YP_003405877.1| - 0.088 13.9 0.0 0.17 12.9 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase AP_endonuc_2 PF01261.24 gi|284167600|ref|YP_003405878.1| - 1.2e-18 67.3 2.1 1.7e-18 66.8 2.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|284167600|ref|YP_003405878.1| - 0.011 15.4 0.3 0.074 12.8 0.0 2.6 3 0 0 3 3 3 0 AP endonuclease family 2 C terminus YpzI PF14140.6 gi|284167600|ref|YP_003405878.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 YpzI-like protein DUF1859 PF08948.10 gi|284167600|ref|YP_003405878.1| - 0.19 11.7 0.0 0.61 10.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1859) ABC_tran PF00005.27 gi|284167602|ref|YP_003405880.1| - 5.9e-32 111.0 0.0 9.8e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284167602|ref|YP_003405880.1| - 1.9e-08 35.0 0.0 9.3e-08 32.8 0.0 2.3 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|284167602|ref|YP_003405880.1| - 4e-06 26.8 0.1 0.02 14.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|284167602|ref|YP_003405880.1| - 0.0001 22.5 0.2 0.00024 21.4 0.2 1.7 1 0 0 1 1 1 1 TOBE domain AAA_16 PF13191.6 gi|284167602|ref|YP_003405880.1| - 0.0057 17.0 0.0 0.009 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|284167602|ref|YP_003405880.1| - 0.0075 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|284167602|ref|YP_003405880.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|284167602|ref|YP_003405880.1| - 0.017 15.4 0.0 0.035 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|284167602|ref|YP_003405880.1| - 0.021 14.5 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284167602|ref|YP_003405880.1| - 0.025 15.0 0.0 0.058 13.8 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284167602|ref|YP_003405880.1| - 0.031 14.3 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|284167602|ref|YP_003405880.1| - 0.034 14.7 0.0 0.08 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284167602|ref|YP_003405880.1| - 0.035 14.6 0.1 0.071 13.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|284167602|ref|YP_003405880.1| - 0.045 13.1 0.0 0.079 12.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|284167602|ref|YP_003405880.1| - 0.052 13.1 1.1 0.14 11.7 0.1 2.1 3 0 0 3 3 3 0 AAA domain TOBE_2 PF08402.10 gi|284167602|ref|YP_003405880.1| - 0.093 12.9 0.0 0.25 11.5 0.0 1.9 1 0 0 1 1 1 0 TOBE domain BPD_transp_1 PF00528.22 gi|284167603|ref|YP_003405881.1| - 4.5e-16 59.1 18.4 4.5e-16 59.1 18.4 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284167604|ref|YP_003405882.1| - 3.7e-17 62.7 15.8 3.7e-17 62.7 15.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TMEM191C PF15194.6 gi|284167604|ref|YP_003405882.1| - 3 8.1 4.7 3.5 7.8 0.1 2.8 3 0 0 3 3 3 0 TMEM191C family SBP_bac_1 PF01547.25 gi|284167605|ref|YP_003405883.1| - 1.8e-17 64.2 4.1 3.1e-17 63.5 2.2 2.2 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284167605|ref|YP_003405883.1| - 0.00097 18.9 5.6 0.0018 18.0 5.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence HpcH_HpaI PF03328.14 gi|284167606|ref|YP_003405884.1| - 1.8e-45 154.8 1.0 2.4e-45 154.4 1.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family RPN6_C_helix PF18503.1 gi|284167606|ref|YP_003405884.1| - 0.016 15.0 0.0 0.036 13.8 0.0 1.7 1 0 0 1 1 1 0 26S proteasome subunit RPN6 C-terminal helix domain GFO_IDH_MocA PF01408.22 gi|284167607|ref|YP_003405885.1| - 6.8e-23 81.8 0.0 1.2e-22 81.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|284167607|ref|YP_003405885.1| - 0.035 14.7 0.1 0.077 13.7 0.1 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain PPDK_N PF01326.19 gi|284167608|ref|YP_003405886.1| - 2.1e-108 362.5 0.1 3.2e-108 361.9 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|284167608|ref|YP_003405886.1| - 1.6e-85 286.8 0.0 2.3e-85 286.3 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|284167608|ref|YP_003405886.1| - 1e-27 95.6 2.8 2.8e-27 94.3 2.8 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RdRP PF05183.12 gi|284167608|ref|YP_003405886.1| - 0.0009 18.0 0.0 0.024 13.3 0.0 2.1 2 0 0 2 2 2 2 RNA dependent RNA polymerase Sugar_tr PF00083.24 gi|284167609|ref|YP_003405887.1| - 8.2e-126 420.5 24.4 9.4e-126 420.3 24.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|284167609|ref|YP_003405887.1| - 4.3e-35 121.3 66.8 2.1e-30 105.9 39.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|284167609|ref|YP_003405887.1| - 2.7e-05 22.8 14.8 0.00022 19.8 4.5 2.3 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.7 gi|284167609|ref|YP_003405887.1| - 3.8e-05 22.7 0.9 3.8e-05 22.7 0.9 2.6 1 1 0 2 2 2 1 MFS_1 like family MFS_2 PF13347.6 gi|284167609|ref|YP_003405887.1| - 4.1e-05 22.3 3.6 4.1e-05 22.3 3.6 3.6 1 1 2 3 3 3 2 MFS/sugar transport protein Gly-zipper_Omp PF13488.6 gi|284167609|ref|YP_003405887.1| - 0.73 9.9 11.3 0.51 10.4 7.4 3.0 2 1 0 2 2 2 0 Glycine zipper MFS_3 PF05977.13 gi|284167609|ref|YP_003405887.1| - 0.85 7.9 21.2 0.032 12.6 9.8 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector Gly-zipper_YMGG PF13441.6 gi|284167609|ref|YP_003405887.1| - 5.5 6.8 10.9 0.19 11.5 3.2 2.6 3 0 0 3 3 3 0 YMGG-like Gly-zipper Usp PF00582.26 gi|284167610|ref|YP_003405888.1| - 2.4e-17 63.7 0.2 2.8e-17 63.6 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family HEAT_2 PF13646.6 gi|284167612|ref|YP_003405890.1| - 1.7e-16 60.4 15.1 2.6e-07 30.9 3.2 3.5 1 1 3 4 4 4 4 HEAT repeats HEAT_EZ PF13513.6 gi|284167612|ref|YP_003405890.1| - 4.2e-11 43.1 6.5 0.009 16.5 0.2 4.4 1 1 4 5 5 5 3 HEAT-like repeat HEAT PF02985.22 gi|284167612|ref|YP_003405890.1| - 4.9e-09 35.7 1.6 0.051 13.9 0.1 5.4 5 0 0 5 5 5 2 HEAT repeat Cnd1 PF12717.7 gi|284167612|ref|YP_003405890.1| - 0.00024 21.2 0.0 0.58 10.2 0.0 2.9 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 zf-ribbon_3 PF13248.6 gi|284167612|ref|YP_003405890.1| - 0.0005 19.4 7.7 0.0012 18.2 7.7 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Adaptin_N PF01602.20 gi|284167612|ref|YP_003405890.1| - 0.014 14.0 0.0 0.93 8.0 0.0 2.1 1 1 1 2 2 2 0 Adaptin N terminal region DZR PF12773.7 gi|284167612|ref|YP_003405890.1| - 0.021 14.8 0.2 0.043 13.8 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|284167612|ref|YP_003405890.1| - 0.023 14.4 6.5 0.049 13.4 6.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain RTP1_C1 PF10363.9 gi|284167612|ref|YP_003405890.1| - 0.085 13.1 0.1 18 5.6 0.0 2.8 2 1 1 3 3 3 0 Required for nuclear transport of RNA pol II C-terminus 1 zinc_ribbon_15 PF17032.5 gi|284167612|ref|YP_003405890.1| - 0.18 12.6 0.1 0.36 11.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon family HEAT_PBS PF03130.16 gi|284167612|ref|YP_003405890.1| - 0.22 12.3 6.9 5.9 7.9 0.2 4.4 4 0 0 4 4 4 0 PBS lyase HEAT-like repeat Apolipoprotein PF01442.18 gi|284167612|ref|YP_003405890.1| - 2.3 8.1 8.1 2.5 7.9 3.4 2.9 2 2 0 2 2 2 0 Apolipoprotein A1/A4/E domain Zn-ribbon_8 PF09723.10 gi|284167612|ref|YP_003405890.1| - 8.3 6.6 10.7 6.5 7.0 0.9 2.9 2 1 1 3 3 3 0 Zinc ribbon domain FecCD PF01032.18 gi|284167613|ref|YP_003405891.1| - 2.3e-88 296.2 34.0 2.8e-88 295.9 33.4 1.3 1 1 0 1 1 1 1 FecCD transport family DUF3481 PF11980.8 gi|284167613|ref|YP_003405891.1| - 0.66 9.7 2.5 5.7 6.7 0.0 2.7 2 0 0 2 2 2 0 C-terminal domain of neuropilin glycoprotein Peripla_BP_2 PF01497.18 gi|284167614|ref|YP_003405892.1| - 3.7e-21 75.8 0.0 6.4e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|284167614|ref|YP_003405892.1| - 0.1 12.5 0.7 0.24 11.3 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.18 gi|284167615|ref|YP_003405893.1| - 1.4e-13 51.0 0.0 1.7e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|284167615|ref|YP_003405893.1| - 3.2e-06 26.8 0.5 6.3e-06 25.8 0.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DHR-2 PF06920.13 gi|284167615|ref|YP_003405893.1| - 0.094 11.3 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Dock homology region 2 Peripla_BP_2 PF01497.18 gi|284167617|ref|YP_003405895.1| - 4.4e-17 62.4 0.1 6.1e-17 62.0 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|284167617|ref|YP_003405895.1| - 0.00018 21.2 0.4 0.00029 20.6 0.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|284167617|ref|YP_003405895.1| - 0.16 11.4 0.2 0.29 10.5 0.2 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Pyr_redox_2 PF07992.14 gi|284167618|ref|YP_003405896.1| - 1.9e-07 30.6 0.0 2.7e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284167618|ref|YP_003405896.1| - 9.3e-06 25.2 0.7 9.3e-06 25.2 0.7 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284167618|ref|YP_003405896.1| - 1.3e-05 24.7 1.6 4.4e-05 22.9 0.2 2.3 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|284167618|ref|YP_003405896.1| - 1.5e-05 24.3 0.1 2.3e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|284167618|ref|YP_003405896.1| - 3.1e-05 23.2 2.6 4.8e-05 22.6 0.4 2.1 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284167618|ref|YP_003405896.1| - 0.00037 20.7 0.2 0.0008 19.6 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|284167618|ref|YP_003405896.1| - 0.00069 19.0 0.1 0.0059 15.9 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284167618|ref|YP_003405896.1| - 0.0017 17.1 0.1 0.003 16.3 0.1 1.4 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|284167618|ref|YP_003405896.1| - 0.0037 16.4 1.7 0.044 12.8 0.3 2.7 2 1 1 3 3 3 1 Lycopene cyclase protein Thi4 PF01946.17 gi|284167618|ref|YP_003405896.1| - 0.0075 15.5 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|284167618|ref|YP_003405896.1| - 0.015 14.9 1.9 0.015 14.9 1.9 3.5 2 1 2 4 4 4 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|284167618|ref|YP_003405896.1| - 0.032 14.8 1.8 0.071 13.7 0.1 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|284167618|ref|YP_003405896.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IclR PF01614.18 gi|284167619|ref|YP_003405897.1| - 3.3e-31 107.8 0.1 1.1e-30 106.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167619|ref|YP_003405897.1| - 2.1e-11 43.4 2.4 3.1e-11 42.9 0.3 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284167619|ref|YP_003405897.1| - 0.0027 17.5 0.0 0.075 12.9 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|284167619|ref|YP_003405897.1| - 0.027 14.4 0.1 0.071 13.1 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.7 gi|284167619|ref|YP_003405897.1| - 0.033 14.2 0.9 1.1 9.3 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284167619|ref|YP_003405897.1| - 0.083 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AAA_23 PF13476.6 gi|284167620|ref|YP_003405898.1| - 2.2e-14 54.5 4.5 2.2e-14 54.5 4.5 4.9 1 1 3 4 4 3 1 AAA domain Spc7 PF08317.11 gi|284167620|ref|YP_003405898.1| - 2e-12 46.6 70.5 0.00051 19.0 1.1 4.3 2 2 2 4 4 4 4 Spc7 kinetochore protein ATG16 PF08614.11 gi|284167620|ref|YP_003405898.1| - 2.3e-07 31.3 67.5 0.0057 16.9 20.8 4.3 2 1 1 3 3 3 3 Autophagy protein 16 (ATG16) GAS PF13851.6 gi|284167620|ref|YP_003405898.1| - 2.9e-06 26.8 62.7 0.0036 16.7 22.6 4.2 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding AAA_15 PF13175.6 gi|284167620|ref|YP_003405898.1| - 1.8e-05 24.7 0.2 1.8e-05 24.7 0.2 3.0 2 2 0 2 2 1 1 AAA ATPase domain Atg14 PF10186.9 gi|284167620|ref|YP_003405898.1| - 3.3e-05 23.2 59.7 0.023 13.8 4.5 4.4 2 2 2 4 4 4 4 Vacuolar sorting 38 and autophagy-related subunit 14 TPR_MLP1_2 PF07926.12 gi|284167620|ref|YP_003405898.1| - 5.2e-05 23.3 70.3 0.44 10.6 16.3 5.1 2 2 1 4 4 4 3 TPR/MLP1/MLP2-like protein DUF3584 PF12128.8 gi|284167620|ref|YP_003405898.1| - 6.2e-05 20.8 59.8 8.9e-05 20.2 9.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3584) Seryl_tRNA_N PF02403.22 gi|284167620|ref|YP_003405898.1| - 0.00011 22.4 62.8 0.011 15.9 9.3 5.4 2 2 3 5 5 5 4 Seryl-tRNA synthetase N-terminal domain DivIC PF04977.15 gi|284167620|ref|YP_003405898.1| - 0.00016 21.3 79.7 0.049 13.4 1.1 9.0 3 2 5 8 8 8 3 Septum formation initiator APG6_N PF17675.1 gi|284167620|ref|YP_003405898.1| - 0.0003 21.3 89.3 0.92 10.0 17.5 6.5 1 1 4 5 5 5 2 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|284167620|ref|YP_003405898.1| - 0.00077 19.5 83.5 0.0068 16.4 23.0 6.2 3 2 3 6 6 5 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.19 gi|284167620|ref|YP_003405898.1| - 0.0013 18.6 66.2 0.035 13.9 27.8 3.4 2 1 1 3 3 3 2 Ezrin/radixin/moesin family Vps51 PF08700.11 gi|284167620|ref|YP_003405898.1| - 0.0017 18.4 4.6 0.0017 18.4 4.6 7.0 3 2 2 5 5 3 1 Vps51/Vps67 AAA_13 PF13166.6 gi|284167620|ref|YP_003405898.1| - 0.0036 16.0 50.5 0.042 12.5 24.1 3.0 1 1 2 3 3 3 3 AAA domain YPEB PF14620.6 gi|284167620|ref|YP_003405898.1| - 0.0041 16.5 2.4 0.0041 16.5 2.4 4.3 1 1 3 4 4 4 1 YpeB sporulation Laminin_II PF06009.12 gi|284167620|ref|YP_003405898.1| - 0.0045 17.0 6.6 0.0045 17.0 6.6 5.5 2 2 2 4 4 4 1 Laminin Domain II DUF5082 PF16888.5 gi|284167620|ref|YP_003405898.1| - 0.006 16.8 64.0 0.031 14.5 17.3 6.6 2 2 3 6 6 6 2 Domain of unknown function (DUF5082) HemX PF04375.14 gi|284167620|ref|YP_003405898.1| - 0.0064 15.8 47.9 0.094 12.0 15.9 4.5 2 2 2 4 4 4 1 HemX, putative uroporphyrinogen-III C-methyltransferase NPV_P10 PF05531.12 gi|284167620|ref|YP_003405898.1| - 0.0065 16.9 41.2 0.19 12.2 1.1 6.9 2 2 6 8 8 8 1 Nucleopolyhedrovirus P10 protein FliJ PF02050.16 gi|284167620|ref|YP_003405898.1| - 0.0075 16.5 57.5 0.023 14.9 1.8 5.4 2 2 2 4 4 4 1 Flagellar FliJ protein LPP PF04728.13 gi|284167620|ref|YP_003405898.1| - 0.0076 16.6 32.7 1.6 9.2 0.2 8.3 5 3 3 9 9 9 1 Lipoprotein leucine-zipper DUF812 PF05667.11 gi|284167620|ref|YP_003405898.1| - 0.0089 15.0 64.2 0.028 13.3 27.3 3.6 1 1 2 3 3 3 2 Protein of unknown function (DUF812) KASH_CCD PF14662.6 gi|284167620|ref|YP_003405898.1| - 0.014 15.2 71.1 0.11 12.4 25.6 4.4 2 2 2 4 4 4 0 Coiled-coil region of CCDC155 or KASH CC2-LZ PF16516.5 gi|284167620|ref|YP_003405898.1| - 0.02 15.2 13.6 0.02 15.2 13.6 6.6 2 2 2 5 5 5 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator EzrA PF06160.12 gi|284167620|ref|YP_003405898.1| - 0.02 13.1 64.6 0.085 11.0 32.6 3.4 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|284167620|ref|YP_003405898.1| - 0.021 14.9 51.2 0.039 14.0 8.0 6.8 2 2 6 8 8 8 0 Protein of unknown function (DUF1664) HALZ PF02183.18 gi|284167620|ref|YP_003405898.1| - 0.027 14.7 0.2 0.027 14.7 0.2 8.1 8 1 1 9 9 8 0 Homeobox associated leucine zipper TMF_TATA_bd PF12325.8 gi|284167620|ref|YP_003405898.1| - 0.033 14.4 81.3 0.47 10.7 24.9 6.5 2 1 6 8 8 7 0 TATA element modulatory factor 1 TATA binding DUF3800 PF12686.7 gi|284167620|ref|YP_003405898.1| - 0.033 14.8 0.0 8.4 7.1 0.0 3.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) Spectrin PF00435.21 gi|284167620|ref|YP_003405898.1| - 0.052 14.0 56.6 0.097 13.2 5.3 5.5 1 1 4 5 5 5 0 Spectrin repeat Fez1 PF06818.15 gi|284167620|ref|YP_003405898.1| - 0.055 13.9 64.9 17 5.8 30.3 3.9 1 1 1 2 2 2 0 Fez1 HMMR_N PF15905.5 gi|284167620|ref|YP_003405898.1| - 0.069 12.6 76.1 0.019 14.5 20.0 4.1 1 1 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal DUF724 PF05266.14 gi|284167620|ref|YP_003405898.1| - 0.071 12.9 57.9 1.3 8.9 1.7 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF724) MAD PF05557.13 gi|284167620|ref|YP_003405898.1| - 0.095 11.1 72.3 0.02 13.3 30.5 3.0 2 2 0 2 2 2 0 Mitotic checkpoint protein Filament PF00038.21 gi|284167620|ref|YP_003405898.1| - 0.15 11.6 70.4 0.23 11.0 11.0 5.0 2 2 2 5 5 5 0 Intermediate filament protein Fib_alpha PF08702.10 gi|284167620|ref|YP_003405898.1| - 0.18 12.0 52.0 0.11 12.6 18.7 4.5 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family FlxA PF14282.6 gi|284167620|ref|YP_003405898.1| - 0.2 11.7 63.7 0.62 10.1 2.6 5.2 3 1 2 5 5 5 0 FlxA-like protein HOOK PF05622.12 gi|284167620|ref|YP_003405898.1| - 0.23 9.6 68.1 0.59 8.2 32.5 2.2 2 0 0 2 2 2 0 HOOK protein HAUS-augmin3 PF14932.6 gi|284167620|ref|YP_003405898.1| - 0.25 10.9 54.6 0.67 9.5 5.7 4.4 1 1 3 4 4 4 0 HAUS augmin-like complex subunit 3 ADIP PF11559.8 gi|284167620|ref|YP_003405898.1| - 0.31 11.1 67.8 0.23 11.5 13.9 5.7 2 2 4 6 6 5 0 Afadin- and alpha -actinin-Binding Golgin_A5 PF09787.9 gi|284167620|ref|YP_003405898.1| - 0.46 9.9 82.4 0.21 11.0 19.1 5.0 1 1 4 5 5 5 0 Golgin subfamily A member 5 Occludin_ELL PF07303.13 gi|284167620|ref|YP_003405898.1| - 0.47 11.2 38.2 2.1 9.1 8.1 5.7 3 1 2 5 5 5 0 Occludin homology domain Uso1_p115_C PF04871.13 gi|284167620|ref|YP_003405898.1| - 0.56 10.6 63.9 0.74 10.2 18.2 5.2 1 1 2 3 3 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Fzo_mitofusin PF04799.13 gi|284167620|ref|YP_003405898.1| - 0.57 9.7 46.3 0.46 10.0 3.1 6.2 2 2 4 6 6 6 0 fzo-like conserved region DUF4201 PF13870.6 gi|284167620|ref|YP_003405898.1| - 0.67 9.7 58.3 0.21 11.3 18.2 5.2 2 2 3 5 5 5 0 Domain of unknown function (DUF4201) FapA PF03961.13 gi|284167620|ref|YP_003405898.1| - 0.72 8.4 51.4 0.44 9.1 8.4 4.4 1 1 3 5 5 5 0 Flagellar Assembly Protein A WXG100 PF06013.12 gi|284167620|ref|YP_003405898.1| - 0.77 10.0 29.8 25 5.2 5.5 8.0 3 2 3 7 7 7 0 Proteins of 100 residues with WXG BLOC1_2 PF10046.9 gi|284167620|ref|YP_003405898.1| - 0.8 10.0 59.9 0.9 9.9 2.8 7.7 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2730 PF10805.8 gi|284167620|ref|YP_003405898.1| - 0.86 9.7 41.1 2 8.5 8.3 6.0 2 2 3 6 6 6 0 Protein of unknown function (DUF2730) DUF4200 PF13863.6 gi|284167620|ref|YP_003405898.1| - 0.91 9.9 70.9 3.8 8.0 3.0 5.6 2 2 2 4 4 3 0 Domain of unknown function (DUF4200) ZapB PF06005.12 gi|284167620|ref|YP_003405898.1| - 0.95 10.0 82.9 0.49 10.9 8.4 7.6 2 2 3 5 5 5 0 Cell division protein ZapB MscS_porin PF12795.7 gi|284167620|ref|YP_003405898.1| - 1.3 8.5 65.7 0.052 13.1 26.8 3.8 2 1 1 3 3 3 0 Mechanosensitive ion channel porin domain DUF4407 PF14362.6 gi|284167620|ref|YP_003405898.1| - 1.6 8.0 50.5 4.4 6.6 10.0 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|284167620|ref|YP_003405898.1| - 1.9 8.0 43.2 3.2e+02 0.7 0.2 3.2 1 1 1 2 2 1 0 Exonuclease VII, large subunit YabA PF06156.13 gi|284167620|ref|YP_003405898.1| - 2.1 9.0 54.0 3.6 8.3 0.7 6.1 2 2 4 6 6 6 0 Initiation control protein YabA UPF0242 PF06785.11 gi|284167620|ref|YP_003405898.1| - 2.5 8.2 78.0 0.81 9.8 9.6 4.7 2 2 3 5 5 5 0 Uncharacterised protein family (UPF0242) N-terminus Cob_adeno_trans PF01923.18 gi|284167620|ref|YP_003405898.1| - 3.5 7.8 31.6 9 6.4 6.9 5.0 1 1 2 3 3 2 0 Cobalamin adenosyltransferase Prefoldin_2 PF01920.20 gi|284167620|ref|YP_003405898.1| - 4.1 7.4 78.4 11 6.1 5.6 9.0 2 2 5 7 7 6 0 Prefoldin subunit FAM184 PF15665.5 gi|284167620|ref|YP_003405898.1| - 4.4 7.0 63.2 0.021 14.6 20.3 3.2 2 1 1 3 3 3 0 Family with sequence similarity 184, A and B Lectin_N PF03954.14 gi|284167620|ref|YP_003405898.1| - 5 6.9 27.0 0.19 11.4 3.8 4.4 3 2 1 5 5 4 0 Hepatic lectin, N-terminal domain Prefoldin PF02996.17 gi|284167620|ref|YP_003405898.1| - 7.7 6.5 56.6 0.18 11.8 0.7 8.6 2 2 6 8 8 8 0 Prefoldin subunit Fmp27_WPPW PF10359.9 gi|284167620|ref|YP_003405898.1| - 8 5.2 57.7 0.093 11.6 9.8 5.3 2 2 3 5 5 5 0 RNA pol II promoter Fmp27 protein domain OmpH PF03938.14 gi|284167620|ref|YP_003405898.1| - 8 6.8 61.8 4.4 7.7 13.9 4.6 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) HEPN_Toprim_N PF18871.1 gi|284167621|ref|YP_003405899.1| - 0.12 12.3 2.8 0.18 11.7 0.7 2.0 1 1 1 2 2 2 0 HEPN/Toprim N-terminal domain 1 IclR PF01614.18 gi|284167622|ref|YP_003405900.1| - 9.7e-30 103.0 0.0 1.8e-29 102.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284167622|ref|YP_003405900.1| - 7.7e-10 38.4 0.1 3.9e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284167622|ref|YP_003405900.1| - 6.9e-05 22.6 0.0 0.003 17.4 0.0 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|284167622|ref|YP_003405900.1| - 0.01 15.8 0.4 0.019 14.9 0.4 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|284167622|ref|YP_003405900.1| - 0.048 13.2 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284167622|ref|YP_003405900.1| - 0.054 13.4 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|284167622|ref|YP_003405900.1| - 0.067 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284167622|ref|YP_003405900.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Amidohydro_2 PF04909.14 gi|284167623|ref|YP_003405901.1| - 2.1e-42 145.9 0.5 2.3e-42 145.8 0.5 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|284167623|ref|YP_003405901.1| - 0.0088 15.4 0.0 2.5 7.4 0.0 2.2 2 0 0 2 2 2 2 TatD related DNase Cupin_2 PF07883.11 gi|284167624|ref|YP_003405902.1| - 2.1e-10 40.1 1.6 3.3e-10 39.5 1.6 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|284167624|ref|YP_003405902.1| - 3.1e-05 23.6 0.4 3.1e-05 23.6 0.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|284167624|ref|YP_003405902.1| - 0.00021 21.0 0.0 0.00035 20.3 0.0 1.3 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 gi|284167624|ref|YP_003405902.1| - 0.0054 16.6 0.1 0.0077 16.1 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Bac_luciferase PF00296.20 gi|284167625|ref|YP_003405903.1| - 1.4e-49 169.3 0.4 5.5e-48 164.0 0.1 1.9 1 1 1 2 2 2 2 Luciferase-like monooxygenase Acyl-CoA_dh_1 PF00441.24 gi|284167626|ref|YP_003405904.1| - 1.9e-49 167.7 1.3 2.7e-49 167.2 1.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|284167626|ref|YP_003405904.1| - 9.8e-27 93.9 0.1 2.7e-26 92.4 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|284167626|ref|YP_003405904.1| - 4.8e-26 91.6 2.2 7.8e-26 90.9 2.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|284167626|ref|YP_003405904.1| - 3.2e-16 59.3 0.0 6.8e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Thiolase_N PF00108.23 gi|284167627|ref|YP_003405905.1| - 3.4e-22 79.1 0.4 3.7e-21 75.7 0.4 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284167627|ref|YP_003405905.1| - 6.4e-09 35.5 3.6 1.4e-08 34.4 0.2 2.9 2 2 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284167627|ref|YP_003405905.1| - 3.1e-07 30.2 1.5 7.6e-07 29.0 1.5 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|284167627|ref|YP_003405905.1| - 0.67 9.8 3.0 6.2 6.7 0.1 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF35_N PF12172.8 gi|284167628|ref|YP_003405906.1| - 1.5e-07 31.2 3.7 2.8e-07 30.3 3.7 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|284167628|ref|YP_003405906.1| - 3.3e-05 23.8 1.5 9.3e-05 22.3 1.5 1.9 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated ACP_syn_III_C PF08541.10 gi|284167628|ref|YP_003405906.1| - 0.0046 17.1 0.1 0.011 15.9 0.1 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Yip1 PF04893.17 gi|284172525|ref|YP_003405907.1| - 3.2e-19 69.3 9.9 3.9e-19 69.0 9.9 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|284172525|ref|YP_003405907.1| - 1.6e-05 24.7 3.3 2.3e-05 24.2 3.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) FtsX PF02687.21 gi|284172525|ref|YP_003405907.1| - 0.053 14.0 8.8 0.17 12.4 4.1 2.6 2 1 0 2 2 2 0 FtsX-like permease family DUF4013 PF13197.6 gi|284172525|ref|YP_003405907.1| - 0.45 10.3 15.0 0.98 9.2 8.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) DUF2768 PF10966.8 gi|284172525|ref|YP_003405907.1| - 1.3 9.5 8.8 1.5 9.3 0.3 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF2768) Aldo_ket_red PF00248.21 gi|284172526|ref|YP_003405908.1| - 2e-73 247.1 0.0 2.5e-73 246.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 gi|284172527|ref|YP_003405909.1| - 5e-24 85.4 0.0 7.9e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172527|ref|YP_003405909.1| - 0.0038 17.2 0.1 0.0084 16.1 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain MCPsignal PF00015.21 gi|284172528|ref|YP_003405910.1| - 4.4e-33 114.5 63.4 8.3e-33 113.6 23.5 5.0 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|284172528|ref|YP_003405910.1| - 2.5e-14 53.4 15.7 4.6e-11 42.9 0.2 5.8 6 1 0 6 6 5 2 HAMP domain DUF948 PF06103.11 gi|284172528|ref|YP_003405910.1| - 0.0026 18.0 45.5 0.03 14.6 4.6 7.6 2 1 2 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 gi|284172528|ref|YP_003405910.1| - 0.011 16.5 3.0 0.011 16.5 3.0 5.5 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) ING PF12998.7 gi|284172528|ref|YP_003405910.1| - 0.29 11.8 12.7 3.1 8.4 0.7 4.4 2 2 2 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding DUF1890 PF09001.11 gi|284172528|ref|YP_003405910.1| - 0.71 10.3 5.3 1 9.8 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) Katanin_con80 PF13925.6 gi|284172528|ref|YP_003405910.1| - 0.79 9.8 10.3 0.23 11.5 0.4 3.8 4 0 0 4 4 4 0 con80 domain of Katanin DUF1664 PF07889.12 gi|284172528|ref|YP_003405910.1| - 1.3 9.1 45.4 0.026 14.6 3.1 6.2 3 2 3 7 7 6 0 Protein of unknown function (DUF1664) COG5 PF10392.9 gi|284172528|ref|YP_003405910.1| - 3.1 8.0 18.8 0.64 10.2 0.8 4.4 2 1 1 4 4 4 0 Golgi transport complex subunit 5 Laminin_II PF06009.12 gi|284172528|ref|YP_003405910.1| - 3.1 7.8 47.3 1.6 8.8 5.7 5.8 2 2 3 6 6 6 0 Laminin Domain II Tmemb_cc2 PF10267.9 gi|284172528|ref|YP_003405910.1| - 4.3 6.4 34.0 0.022 13.9 14.8 2.7 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein DUF3290 PF11694.8 gi|284172528|ref|YP_003405910.1| - 5 7.1 13.7 8.8 6.3 0.0 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF3290) ApoO PF09769.9 gi|284172528|ref|YP_003405910.1| - 8.2 6.4 15.4 4.5 7.3 0.7 4.6 3 1 1 4 4 4 0 Apolipoprotein O Lactonase PF10282.9 gi|284172529|ref|YP_003405911.1| - 2.8e-106 355.7 0.0 3.2e-106 355.5 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|284172529|ref|YP_003405911.1| - 1.1e-06 28.5 0.0 0.012 15.2 0.0 3.0 2 1 1 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region DUF1513 PF07433.11 gi|284172529|ref|YP_003405911.1| - 0.0013 17.9 0.1 0.96 8.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1513) Lipase_C PF18067.1 gi|284172529|ref|YP_003405911.1| - 0.0023 18.5 1.1 31 5.2 0.1 4.0 2 2 2 4 4 4 0 Lipase C-terminal domain CshA_NR2 PF18651.1 gi|284172529|ref|YP_003405911.1| - 0.02 14.1 0.0 0.036 13.3 0.0 1.3 1 0 0 1 1 1 0 Surface adhesin CshA non-repetitive domain 2 NHL PF01436.21 gi|284172529|ref|YP_003405911.1| - 0.048 13.7 2.2 5.2 7.3 0.0 3.1 3 0 0 3 3 3 0 NHL repeat DUF3509 PF12021.8 gi|284172529|ref|YP_003405911.1| - 0.062 13.1 0.0 6 6.7 0.0 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF3509) PQQ PF01011.21 gi|284172529|ref|YP_003405911.1| - 0.12 12.3 0.3 30 4.8 0.0 3.8 4 0 0 4 4 4 0 PQQ enzyme repeat TonB_C PF03544.14 gi|284172529|ref|YP_003405911.1| - 0.13 12.8 0.0 3.9 8.0 0.0 2.8 3 0 0 3 3 3 0 Gram-negative bacterial TonB protein C-terminal GFO_IDH_MocA PF01408.22 gi|284172530|ref|YP_003405912.1| - 8.7e-23 81.4 0.0 1.5e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172530|ref|YP_003405912.1| - 6.7e-15 55.1 0.2 1.3e-14 54.2 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|284172530|ref|YP_003405912.1| - 0.00051 20.5 0.1 0.001 19.5 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ox_reductase_C PF08635.10 gi|284172530|ref|YP_003405912.1| - 0.041 13.5 0.1 0.31 10.7 0.1 2.0 1 1 1 2 2 2 0 Putative oxidoreductase C terminal domain CoA_binding_2 PF13380.6 gi|284172530|ref|YP_003405912.1| - 0.043 14.3 0.0 0.077 13.5 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.16 gi|284172530|ref|YP_003405912.1| - 0.092 13.4 0.1 0.37 11.5 0.1 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PuR_N PF09182.10 gi|284172530|ref|YP_003405912.1| - 0.15 12.0 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal DUF296 PF03479.15 gi|284172531|ref|YP_003405913.1| - 3.4e-18 66.0 0.0 4.3e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain TAT_signal PF10518.9 gi|284172532|ref|YP_003405914.1| - 0.46 10.4 5.8 0.94 9.4 5.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1656 PF07869.12 gi|284172532|ref|YP_003405914.1| - 1.7 8.7 10.2 0.57 10.2 3.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) Aldedh PF00171.22 gi|284172533|ref|YP_003405915.1| - 9.7e-167 555.1 3.2 1.1e-166 555.0 3.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Lactamase_B_3 PF13483.6 gi|284172534|ref|YP_003405916.1| - 1.5e-11 44.4 0.0 2e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284172534|ref|YP_003405916.1| - 2.3e-10 40.3 0.5 4.1e-10 39.5 0.5 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Epimerase PF01370.21 gi|284172535|ref|YP_003405917.1| - 3.2e-20 72.6 0.0 4e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284172535|ref|YP_003405917.1| - 6.3e-13 48.4 0.0 8.6e-13 47.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|284172535|ref|YP_003405917.1| - 2.4e-11 43.6 0.3 1.1e-10 41.5 0.0 2.0 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|284172535|ref|YP_003405917.1| - 2.7e-11 43.2 0.0 4.8e-10 39.1 0.0 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|284172535|ref|YP_003405917.1| - 1.8e-08 34.5 0.0 2.5e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|284172535|ref|YP_003405917.1| - 1.1e-07 31.2 0.0 1.6e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|284172535|ref|YP_003405917.1| - 1.8e-07 30.6 0.0 2.6e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein DapB_N PF01113.20 gi|284172535|ref|YP_003405917.1| - 0.022 14.9 0.0 0.29 11.2 0.0 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|284172535|ref|YP_003405917.1| - 0.034 14.1 0.0 0.74 9.7 0.0 2.3 1 1 0 1 1 1 0 KR domain Usp PF00582.26 gi|284172536|ref|YP_003405918.1| - 3.8e-12 46.9 0.1 7.8e-12 45.9 0.1 1.4 1 1 0 1 1 1 1 Universal stress protein family MR_MLE_C PF13378.6 gi|284172537|ref|YP_003405919.1| - 9.8e-66 221.5 0.1 1.4e-65 220.9 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172537|ref|YP_003405919.1| - 2e-14 53.8 0.0 1.1e-13 51.4 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DHDPS PF00701.22 gi|284172538|ref|YP_003405920.1| - 6.9e-35 120.2 0.0 8.3e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family MR_MLE_C PF13378.6 gi|284172539|ref|YP_003405921.1| - 2e-46 158.4 1.1 3.1e-46 157.7 0.5 1.6 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172539|ref|YP_003405921.1| - 1.6e-12 47.6 0.0 2.8e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Pectinesterase PF01095.19 gi|284172540|ref|YP_003405922.1| - 4e-73 245.8 0.0 4.9e-73 245.5 0.0 1.1 1 0 0 1 1 1 1 Pectinesterase Beta_helix PF13229.6 gi|284172540|ref|YP_003405922.1| - 0.0053 16.6 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 Right handed beta helix region ThuA PF06283.11 gi|284172541|ref|YP_003405923.1| - 5.3e-29 101.9 0.0 6.1e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Trehalose utilisation RicinB_lectin_2 PF14200.6 gi|284172542|ref|YP_003405924.1| - 4.9e-39 132.9 10.8 1.4e-23 83.4 3.8 2.6 2 0 0 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284172542|ref|YP_003405924.1| - 3.4e-15 56.4 2.8 3.4e-15 56.4 2.8 1.8 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain Pec_lyase_C PF00544.19 gi|284172542|ref|YP_003405924.1| - 2e-05 24.3 2.6 0.00021 20.9 2.6 2.4 1 1 0 1 1 1 1 Pectate lyase Inhibitor_I66 PF16850.5 gi|284172542|ref|YP_003405924.1| - 0.0049 16.7 0.0 0.19 11.6 0.0 2.3 2 0 0 2 2 2 1 Peptidase inhibitor I66 DUF2778 PF10908.8 gi|284172542|ref|YP_003405924.1| - 0.036 14.4 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2778) MR_MLE_C PF13378.6 gi|284172543|ref|YP_003405925.1| - 1.1e-66 224.6 3.9 1.6e-66 224.0 3.9 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172543|ref|YP_003405925.1| - 3.3e-21 75.7 0.0 8.5e-21 74.3 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF802 PF05650.11 gi|284172543|ref|YP_003405925.1| - 0.087 13.3 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF802) ThuA PF06283.11 gi|284172544|ref|YP_003405926.1| - 4.1e-34 118.7 0.0 4.6e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation Glyco_hydro_42M PF08532.10 gi|284172544|ref|YP_003405926.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 Beta-galactosidase trimerisation domain GFO_IDH_MocA PF01408.22 gi|284172545|ref|YP_003405927.1| - 2.8e-18 66.9 0.0 4.3e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|284172545|ref|YP_003405927.1| - 0.00045 20.9 0.0 0.00077 20.1 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284172545|ref|YP_003405927.1| - 0.0088 16.6 0.0 0.017 15.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|284172545|ref|YP_003405927.1| - 0.054 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|284172545|ref|YP_003405927.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GOLD_2 PF13897.6 gi|284172545|ref|YP_003405927.1| - 0.17 12.4 0.1 1.1 9.8 0.0 2.1 2 0 0 2 2 2 0 Golgi-dynamics membrane-trafficking Bac_luciferase PF00296.20 gi|284172546|ref|YP_003405928.1| - 2.4e-49 168.5 0.0 3e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Lipase_GDSL_2 PF13472.6 gi|284172547|ref|YP_003405929.1| - 7.5e-19 68.8 0.0 9.2e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|284172547|ref|YP_003405929.1| - 5e-10 39.7 0.0 6.8e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DltD PF04914.12 gi|284172547|ref|YP_003405929.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 DltD protein adh_short_C2 PF13561.6 gi|284172548|ref|YP_003405930.1| - 4.9e-65 219.4 3.8 5.9e-65 219.1 3.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172548|ref|YP_003405930.1| - 8e-62 208.2 4.0 9.3e-62 208.0 4.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172548|ref|YP_003405930.1| - 4.5e-15 56.0 1.0 6.1e-15 55.6 1.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172548|ref|YP_003405930.1| - 0.0002 20.9 0.2 0.00047 19.7 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|284172548|ref|YP_003405930.1| - 0.00047 20.4 0.3 0.0039 17.5 0.3 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|284172548|ref|YP_003405930.1| - 0.097 11.7 0.3 0.15 11.1 0.3 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 gi|284172548|ref|YP_003405930.1| - 0.36 10.4 2.0 0.62 9.6 2.0 1.5 1 0 0 1 1 1 0 NmrA-like family SBP_bac_5 PF00496.22 gi|284172549|ref|YP_003405931.1| - 1.6e-34 119.5 0.7 2.7e-34 118.7 0.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172549|ref|YP_003405931.1| - 0.022 14.6 1.8 0.033 14.0 1.8 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.22 gi|284172550|ref|YP_003405932.1| - 3.1e-34 118.6 0.4 5.1e-34 117.9 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172550|ref|YP_003405932.1| - 0.0004 20.1 0.1 0.00062 19.5 0.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.22 gi|284172551|ref|YP_003405933.1| - 4.8e-41 141.0 3.8 7.2e-41 140.4 3.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172551|ref|YP_003405933.1| - 0.00031 20.4 0.3 0.00046 19.9 0.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CRPA PF05745.11 gi|284172552|ref|YP_003405934.1| - 1.2 9.2 6.0 1.4 8.9 6.0 1.0 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) BPD_transp_1 PF00528.22 gi|284172553|ref|YP_003405935.1| - 4.8e-31 107.9 12.2 4.8e-31 107.9 12.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2956 PF11169.8 gi|284172553|ref|YP_003405935.1| - 0.14 12.3 0.4 0.31 11.3 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) DUF3464 PF11947.8 gi|284172553|ref|YP_003405935.1| - 3.1 7.5 3.9 6.4 6.5 3.2 1.9 1 1 0 1 1 1 0 Photosynthesis affected mutant 68 BPD_transp_1 PF00528.22 gi|284172554|ref|YP_003405936.1| - 9.4e-26 90.7 8.8 9.4e-26 90.7 8.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|284172555|ref|YP_003405937.1| - 3.2e-50 170.2 0.0 2.7e-27 96.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|284172555|ref|YP_003405937.1| - 5.8e-36 122.8 4.6 8.1e-19 67.9 0.2 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172555|ref|YP_003405937.1| - 1.9e-15 57.4 7.5 5.5e-08 33.0 0.7 4.2 2 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284172555|ref|YP_003405937.1| - 9e-08 32.5 1.2 0.033 14.5 0.0 3.4 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.19 gi|284172555|ref|YP_003405937.1| - 4.8e-07 29.4 1.5 0.024 14.1 0.1 4.1 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284172555|ref|YP_003405937.1| - 5.9e-07 30.0 0.0 0.0095 16.3 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|284172555|ref|YP_003405937.1| - 2.5e-06 27.1 0.1 0.053 13.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|284172555|ref|YP_003405937.1| - 1.6e-05 24.7 0.1 0.31 10.8 0.0 3.4 3 0 0 3 3 3 2 IstB-like ATP binding protein NACHT PF05729.12 gi|284172555|ref|YP_003405937.1| - 0.00012 22.1 2.0 0.37 10.7 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.6 gi|284172555|ref|YP_003405937.1| - 0.00013 21.6 0.0 1.2 8.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|284172555|ref|YP_003405937.1| - 0.00016 21.6 0.0 0.2 11.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase NB-ARC PF00931.22 gi|284172555|ref|YP_003405937.1| - 0.00016 21.0 0.2 0.13 11.5 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.16 gi|284172555|ref|YP_003405937.1| - 0.00032 20.2 0.0 0.98 8.8 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.22 gi|284172555|ref|YP_003405937.1| - 0.00055 20.3 0.1 2 8.9 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|284172555|ref|YP_003405937.1| - 0.00077 19.2 0.0 0.57 9.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|284172555|ref|YP_003405937.1| - 0.0011 19.0 1.2 1.9 8.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|284172555|ref|YP_003405937.1| - 0.0016 17.8 0.0 0.53 9.6 0.0 2.5 2 0 0 2 2 2 1 KaiC MobB PF03205.14 gi|284172555|ref|YP_003405937.1| - 0.0017 18.2 0.1 1.8 8.5 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|284172555|ref|YP_003405937.1| - 0.0027 17.9 0.4 1.2 9.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284172555|ref|YP_003405937.1| - 0.0041 17.7 0.0 1.8 9.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|284172555|ref|YP_003405937.1| - 0.0058 16.4 1.3 9.3 5.8 0.0 3.2 2 1 0 3 3 3 0 AAA ATPase domain AAA_7 PF12775.7 gi|284172555|ref|YP_003405937.1| - 0.0067 16.0 0.1 5.7 6.4 0.1 3.0 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA PF00004.29 gi|284172555|ref|YP_003405937.1| - 0.0083 16.6 0.3 2.6 8.5 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|284172555|ref|YP_003405937.1| - 0.0092 15.3 0.0 3.4 6.9 0.0 2.6 3 0 0 3 3 3 1 Zeta toxin Sigma54_activat PF00158.26 gi|284172555|ref|YP_003405937.1| - 0.012 15.3 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|284172555|ref|YP_003405937.1| - 0.017 15.2 0.0 0.049 13.7 0.0 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain Roc PF08477.13 gi|284172555|ref|YP_003405937.1| - 0.027 14.7 0.9 4.3 7.6 0.2 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Mg_chelatase PF01078.21 gi|284172555|ref|YP_003405937.1| - 0.03 13.7 0.1 3.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|284172555|ref|YP_003405937.1| - 0.031 13.7 0.5 9.5 5.6 0.1 3.2 3 0 0 3 3 3 0 Bacterial TniB protein AAA_30 PF13604.6 gi|284172555|ref|YP_003405937.1| - 0.038 13.7 0.1 1.5 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|284172555|ref|YP_003405937.1| - 0.047 13.8 0.3 7 6.8 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|284172555|ref|YP_003405937.1| - 0.058 14.0 0.0 5 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|284172555|ref|YP_003405937.1| - 0.061 13.3 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|284172555|ref|YP_003405937.1| - 0.07 12.9 0.2 0.61 9.8 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.9 gi|284172555|ref|YP_003405937.1| - 0.088 11.6 1.0 1.9 7.2 0.0 3.1 4 1 0 4 4 4 0 Predicted ATPase of the ABC class PRK PF00485.18 gi|284172555|ref|YP_003405937.1| - 0.1 12.3 0.2 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.15 gi|284172555|ref|YP_003405937.1| - 0.45 10.4 1.9 46 3.9 0.3 3.6 4 0 0 4 4 4 0 NTPase Hpr_kinase_C PF07475.12 gi|284172555|ref|YP_003405937.1| - 0.83 9.2 2.8 3.4 7.2 0.6 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain GD_AH_C PF04295.13 gi|284172556|ref|YP_003405938.1| - 3.1e-57 194.2 0.7 2.6e-36 125.3 0.3 2.1 2 0 0 2 2 2 2 D-galactarate dehydratase / Altronate hydrolase, C terminus TPALS PF18178.1 gi|284172556|ref|YP_003405938.1| - 0.0039 16.7 0.2 0.0081 15.6 0.2 1.5 1 1 0 1 1 1 1 TIR- and PNP-associating SLOG family CoA_binding PF02629.19 gi|284172556|ref|YP_003405938.1| - 0.038 14.7 0.1 1 10.1 0.1 2.4 2 0 0 2 2 2 0 CoA binding domain SAF PF08666.12 gi|284172557|ref|YP_003405939.1| - 5.9e-15 55.7 0.1 8.9e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 SAF domain GD_AH_C PF04295.13 gi|284172558|ref|YP_003405940.1| - 7.4e-138 459.6 2.4 8.9e-138 459.3 2.4 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus DUF3729 PF12526.8 gi|284172558|ref|YP_003405940.1| - 0.34 12.5 1.2 0.86 11.2 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3729) DHDPS PF00701.22 gi|284172559|ref|YP_003405941.1| - 5.6e-33 113.9 0.0 7e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CBM9_2 PF16011.5 gi|284172560|ref|YP_003405942.1| - 3.2e-34 118.4 0.0 4e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 Carbohydrate-binding family 9 CBM9_1 PF06452.11 gi|284172560|ref|YP_003405942.1| - 5.6e-07 29.7 0.6 4.7e-06 26.6 0.2 2.2 2 1 0 2 2 2 1 Carbohydrate family 9 binding domain-like TPP_enzyme_C PF02775.21 gi|284172561|ref|YP_003405943.1| - 3.8e-39 133.9 0.0 6.3e-39 133.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|284172561|ref|YP_003405943.1| - 2e-37 128.5 0.0 2.5e-33 115.1 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|284172561|ref|YP_003405943.1| - 5.3e-31 107.2 0.1 1e-30 106.2 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Alpha-L-AF_C PF06964.12 gi|284172562|ref|YP_003405944.1| - 2.1e-09 37.8 0.0 3.8e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain ABC_tran PF00005.27 gi|284172564|ref|YP_003405946.1| - 4.8e-31 108.1 0.0 7.1e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172564|ref|YP_003405946.1| - 1.1e-17 64.2 0.2 2.2e-17 63.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172564|ref|YP_003405946.1| - 0.0031 17.4 1.7 0.44 10.3 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172564|ref|YP_003405946.1| - 0.0056 16.2 0.7 0.14 11.6 0.7 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284172564|ref|YP_003405946.1| - 0.011 16.0 0.8 0.38 11.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284172564|ref|YP_003405946.1| - 0.017 14.8 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284172564|ref|YP_003405946.1| - 0.044 13.7 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|284172564|ref|YP_003405946.1| - 0.054 13.9 0.0 0.089 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|284172564|ref|YP_003405946.1| - 0.054 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 KaiC ABC_ATPase PF09818.9 gi|284172564|ref|YP_003405946.1| - 0.07 11.9 0.2 5.2 5.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|284172564|ref|YP_003405946.1| - 0.077 12.2 1.5 0.08 12.1 0.1 1.7 3 0 0 3 3 3 0 NB-ARC domain AAA_25 PF13481.6 gi|284172564|ref|YP_003405946.1| - 0.095 12.3 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|284172565|ref|YP_003405947.1| - 2e-22 80.2 0.0 2.8e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172565|ref|YP_003405947.1| - 5.2e-18 65.3 0.5 1.1e-17 64.3 0.5 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172565|ref|YP_003405947.1| - 2.1e-10 40.9 0.3 2e-08 34.4 0.4 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172565|ref|YP_003405947.1| - 0.0002 20.9 0.9 0.043 13.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284172565|ref|YP_003405947.1| - 0.00042 20.6 0.7 0.0091 16.3 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|284172565|ref|YP_003405947.1| - 0.0032 17.1 0.0 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|284172565|ref|YP_003405947.1| - 0.0088 14.9 0.1 0.036 12.9 0.0 1.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class DUF87 PF01935.17 gi|284172565|ref|YP_003405947.1| - 0.018 15.1 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_15 PF13175.6 gi|284172565|ref|YP_003405947.1| - 0.019 14.7 0.0 2.4 7.8 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|284172565|ref|YP_003405947.1| - 0.037 13.7 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|284172565|ref|YP_003405947.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MeaB PF03308.16 gi|284172565|ref|YP_003405947.1| - 0.079 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|284172565|ref|YP_003405947.1| - 0.086 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|284172565|ref|YP_003405947.1| - 0.1 13.0 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|284172565|ref|YP_003405947.1| - 0.11 12.8 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|284172566|ref|YP_003405948.1| - 6.5e-23 81.4 13.2 6.5e-23 81.4 13.2 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF21 PF01595.20 gi|284172566|ref|YP_003405948.1| - 2.1 8.0 6.6 0.96 9.1 0.2 2.3 2 0 0 2 2 2 0 Cyclin M transmembrane N-terminal domain BPD_transp_1 PF00528.22 gi|284172567|ref|YP_003405949.1| - 9.6e-39 133.0 13.2 9.6e-39 133.0 13.2 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|284172568|ref|YP_003405950.1| - 4.1e-33 114.9 2.7 6.4e-33 114.2 2.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MatE PF01554.18 gi|284172570|ref|YP_003405952.1| - 3.3e-46 156.9 27.9 5.1e-27 94.5 8.0 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|284172570|ref|YP_003405952.1| - 1.3e-10 41.5 13.1 4e-10 39.9 6.2 4.3 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|284172570|ref|YP_003405952.1| - 2.5e-08 33.0 10.6 3.1e-07 29.3 2.4 2.8 2 1 1 3 3 3 2 Lipid II flippase MurJ Usp PF00582.26 gi|284172571|ref|YP_003405953.1| - 2e-10 41.3 0.5 7.6e-10 39.4 0.5 1.7 1 1 0 1 1 1 1 Universal stress protein family TFIIA_gamma_N PF02268.16 gi|284172571|ref|YP_003405953.1| - 0.081 13.0 0.1 13 5.9 0.1 2.5 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain Alpha-L-AF_C PF06964.12 gi|284172572|ref|YP_003405954.1| - 1.8e-28 99.8 0.1 2.7e-28 99.2 0.1 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain DUF5016 PF16408.5 gi|284172572|ref|YP_003405954.1| - 0.14 12.2 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5016) ABC_membrane PF00664.23 gi|284172573|ref|YP_003405955.1| - 7.4e-39 134.0 3.0 9.2e-39 133.7 3.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|284172573|ref|YP_003405955.1| - 1.7e-36 125.8 0.0 2.6e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|284172573|ref|YP_003405955.1| - 1.3e-05 24.8 0.0 0.00021 20.8 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284172573|ref|YP_003405955.1| - 2.1e-05 25.0 0.5 7.2e-05 23.2 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284172573|ref|YP_003405955.1| - 0.00046 20.1 0.0 0.0008 19.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|284172573|ref|YP_003405955.1| - 0.0071 16.6 0.2 0.039 14.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284172573|ref|YP_003405955.1| - 0.0073 16.0 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284172573|ref|YP_003405955.1| - 0.008 15.9 0.4 0.024 14.4 0.4 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|284172573|ref|YP_003405955.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|284172573|ref|YP_003405955.1| - 0.021 15.0 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain HR_lesion PF05514.11 gi|284172573|ref|YP_003405955.1| - 0.035 14.3 0.3 0.082 13.1 0.3 1.6 1 0 0 1 1 1 0 HR-like lesion-inducing AAA_18 PF13238.6 gi|284172573|ref|YP_003405955.1| - 0.049 14.2 0.0 0.093 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Hum_adeno_E3A PF05393.11 gi|284172573|ref|YP_003405955.1| - 0.054 13.5 0.1 0.5 10.4 0.1 2.5 3 0 0 3 3 2 0 Human adenovirus early E3A glycoprotein MMR_HSR1 PF01926.23 gi|284172573|ref|YP_003405955.1| - 0.061 13.4 0.1 0.24 11.5 0.0 2.1 3 0 0 3 3 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|284172573|ref|YP_003405955.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|284172573|ref|YP_003405955.1| - 0.066 13.7 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|284172573|ref|YP_003405955.1| - 0.078 12.8 0.0 4.8 6.9 0.0 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|284172573|ref|YP_003405955.1| - 0.08 13.4 0.0 0.3 11.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|284172573|ref|YP_003405955.1| - 0.089 12.5 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|284172573|ref|YP_003405955.1| - 0.19 11.7 0.2 1.2 9.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AP_endonuc_2 PF01261.24 gi|284172574|ref|YP_003405956.1| - 3.2e-34 118.2 1.3 5e-34 117.6 1.3 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel LAL_C2 PF18603.1 gi|284172574|ref|YP_003405956.1| - 0.074 13.2 0.1 0.074 13.2 0.1 3.1 4 0 0 4 4 4 0 L-amino acid ligase C-terminal domain 2 Glyco_hydro_127 PF07944.12 gi|284172576|ref|YP_003405958.1| - 2.2e-166 554.4 0.0 2.5e-166 554.2 0.0 1.0 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 gi|284172576|ref|YP_003405958.1| - 0.017 14.2 0.1 0.033 13.3 0.1 1.4 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 IclR PF01614.18 gi|284172577|ref|YP_003405959.1| - 5.7e-36 123.2 0.0 9.3e-36 122.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172577|ref|YP_003405959.1| - 2.3e-12 46.5 0.0 1.2e-11 44.2 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172577|ref|YP_003405959.1| - 0.00036 20.3 0.0 0.00071 19.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284172577|ref|YP_003405959.1| - 0.00036 20.0 0.0 0.0007 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|284172577|ref|YP_003405959.1| - 0.0019 18.6 0.1 0.0042 17.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|284172577|ref|YP_003405959.1| - 0.0026 17.8 0.0 0.0066 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284172577|ref|YP_003405959.1| - 0.0028 17.6 0.0 0.0067 16.3 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|284172577|ref|YP_003405959.1| - 0.0039 17.0 0.0 0.009 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284172577|ref|YP_003405959.1| - 0.0052 16.6 0.0 0.026 14.4 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|284172577|ref|YP_003405959.1| - 0.036 13.9 0.1 0.088 12.6 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_45 PF14947.6 gi|284172577|ref|YP_003405959.1| - 0.041 13.9 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix UPF0122 PF04297.14 gi|284172577|ref|YP_003405959.1| - 0.046 13.9 0.3 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.6 gi|284172577|ref|YP_003405959.1| - 0.074 12.9 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain SpoIIID PF12116.8 gi|284172577|ref|YP_003405959.1| - 0.15 12.2 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D SGL PF08450.12 gi|284172578|ref|YP_003405960.1| - 2.5e-69 233.6 0.3 3e-69 233.3 0.3 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Kelch_3 PF13415.6 gi|284172578|ref|YP_003405960.1| - 0.0042 17.4 0.0 4 7.8 0.0 3.3 2 0 0 2 2 2 2 Galactose oxidase, central domain Glyoxalase_6 PF18029.1 gi|284172578|ref|YP_003405960.1| - 0.043 14.6 0.1 0.19 12.5 0.1 2.1 2 0 0 2 2 2 0 Glyoxalase-like domain Str_synth PF03088.16 gi|284172578|ref|YP_003405960.1| - 0.072 13.2 0.0 1.3 9.2 0.0 2.7 3 0 0 3 3 3 0 Strictosidine synthase adh_short_C2 PF13561.6 gi|284172579|ref|YP_003405961.1| - 7.8e-66 222.0 3.7 9.5e-66 221.7 3.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172579|ref|YP_003405961.1| - 2.5e-50 170.7 1.0 3.2e-50 170.3 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172579|ref|YP_003405961.1| - 3.5e-17 62.9 0.4 4.7e-17 62.5 0.4 1.1 1 0 0 1 1 1 1 KR domain F420_oxidored PF03807.17 gi|284172579|ref|YP_003405961.1| - 1.3e-06 28.9 0.7 3.2e-06 27.6 0.7 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|284172579|ref|YP_003405961.1| - 0.00078 19.0 0.4 0.00097 18.7 0.4 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|284172579|ref|YP_003405961.1| - 0.0017 17.7 0.2 0.015 14.6 0.0 2.3 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.13 gi|284172579|ref|YP_003405961.1| - 0.0072 15.9 1.2 0.01 15.4 1.2 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|284172579|ref|YP_003405961.1| - 0.012 15.0 0.1 0.023 14.1 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|284172579|ref|YP_003405961.1| - 0.03 14.6 1.1 0.089 13.1 0.9 1.8 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF1367 PF07105.11 gi|284172579|ref|YP_003405961.1| - 0.044 13.4 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1367) 3HCDH_N PF02737.18 gi|284172579|ref|YP_003405961.1| - 0.045 13.6 1.2 0.078 12.9 1.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284172579|ref|YP_003405961.1| - 0.058 13.6 0.4 0.76 9.9 0.4 2.2 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|284172579|ref|YP_003405961.1| - 0.12 12.0 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|284172579|ref|YP_003405961.1| - 0.19 12.2 1.0 0.39 11.2 1.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding HalOD1 PF18545.1 gi|284172580|ref|YP_003405962.1| - 4e-23 81.5 1.0 4.6e-23 81.3 1.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 ADH_N PF08240.12 gi|284172581|ref|YP_003405963.1| - 3.1e-30 104.3 0.5 7.5e-30 103.0 0.5 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284172581|ref|YP_003405963.1| - 1.1e-19 70.7 0.0 1.9e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|284172581|ref|YP_003405963.1| - 1.3e-11 44.4 0.0 2e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|284172581|ref|YP_003405963.1| - 7.7e-08 33.5 0.0 2e-07 32.1 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|284172581|ref|YP_003405963.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase MR_MLE_C PF13378.6 gi|284172582|ref|YP_003405964.1| - 6.5e-57 192.6 0.4 8.7e-57 192.2 0.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172582|ref|YP_003405964.1| - 3.1e-12 46.7 0.0 5.2e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GntP_permease PF02447.16 gi|284172583|ref|YP_003405965.1| - 9.3e-98 327.8 28.1 1.1e-97 327.6 28.1 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|284172583|ref|YP_003405965.1| - 1.2e-18 67.3 27.5 1.2e-18 67.3 27.5 2.2 2 1 0 2 2 2 1 Citrate transporter Aldedh PF00171.22 gi|284172584|ref|YP_003405966.1| - 9.9e-169 561.7 0.6 1.1e-168 561.5 0.6 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family FAA_hydrolase PF01557.18 gi|284172585|ref|YP_003405967.1| - 5.9e-23 81.7 0.1 1.2e-21 77.5 0.1 2.0 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_hydro_4C PF11975.8 gi|284172586|ref|YP_003405968.1| - 1.9e-62 211.0 0.0 2.6e-62 210.6 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 gi|284172586|ref|YP_003405968.1| - 1.5e-57 194.1 0.0 2e-57 193.7 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase DUF624 PF04854.14 gi|284172587|ref|YP_003405969.1| - 4.3e-05 23.5 0.6 4.3e-05 23.5 0.6 2.8 2 2 0 2 2 2 1 Protein of unknown function, DUF624 DUF975 PF06161.11 gi|284172587|ref|YP_003405969.1| - 0.0089 15.8 1.6 0.028 14.2 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF975) Deltameth_res PF16020.5 gi|284172587|ref|YP_003405969.1| - 2.6 8.0 4.4 1 9.3 0.4 2.4 2 0 0 2 2 2 0 Deltamethrin resistance PRA1 PF03208.19 gi|284172587|ref|YP_003405969.1| - 3.9 7.1 20.7 44 3.7 4.3 2.1 1 1 1 2 2 2 0 PRA1 family protein EMP70 PF02990.16 gi|284172587|ref|YP_003405969.1| - 8.8 4.9 12.1 0.28 9.8 4.6 1.9 1 1 1 2 2 2 0 Endomembrane protein 70 BNR_2 PF13088.6 gi|284172588|ref|YP_003405970.1| - 2.9e-08 33.4 0.3 0.00028 20.3 0.0 3.1 1 1 2 3 3 3 3 BNR repeat-like domain BNR PF02012.20 gi|284172588|ref|YP_003405970.1| - 0.00034 20.2 19.2 0.046 13.7 0.8 4.6 5 0 0 5 5 5 3 BNR/Asp-box repeat BNR_3 PF13859.6 gi|284172588|ref|YP_003405970.1| - 0.021 14.1 0.0 1.2 8.3 0.0 2.7 3 0 0 3 3 3 0 BNR repeat-like domain Sortilin-Vps10 PF15902.5 gi|284172588|ref|YP_003405970.1| - 0.05 12.4 0.7 8.7 5.0 0.0 2.7 3 0 0 3 3 3 0 Sortilin, neurotensin receptor 3, ABC_tran PF00005.27 gi|284172589|ref|YP_003405971.1| - 3.4e-32 111.8 0.0 7.2e-32 110.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172589|ref|YP_003405971.1| - 1.1e-10 42.2 0.0 4.4e-10 40.2 0.0 2.2 2 0 0 2 2 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|284172589|ref|YP_003405971.1| - 8e-10 38.7 0.0 4.1e-09 36.5 0.0 2.3 3 0 0 3 3 2 1 TOBE domain AAA_21 PF13304.6 gi|284172589|ref|YP_003405971.1| - 1.8e-08 34.6 0.0 0.0016 18.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172589|ref|YP_003405971.1| - 4.4e-05 23.0 0.1 9.8e-05 21.9 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Cytidylate_kin PF02224.18 gi|284172589|ref|YP_003405971.1| - 6.6e-05 22.7 0.5 0.00033 20.4 0.5 1.9 1 1 0 1 1 1 1 Cytidylate kinase AAA_22 PF13401.6 gi|284172589|ref|YP_003405971.1| - 8.7e-05 22.8 0.1 0.00041 20.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284172589|ref|YP_003405971.1| - 0.00021 21.0 0.0 0.0005 19.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284172589|ref|YP_003405971.1| - 0.00081 19.3 0.1 0.0018 18.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|284172589|ref|YP_003405971.1| - 0.0021 18.5 0.1 0.0048 17.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|284172589|ref|YP_003405971.1| - 0.0067 17.0 0.2 0.1 13.2 0.0 2.6 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_23 PF13476.6 gi|284172589|ref|YP_003405971.1| - 0.017 15.6 0.0 0.046 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284172589|ref|YP_003405971.1| - 0.029 14.5 0.0 0.087 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|284172589|ref|YP_003405971.1| - 0.049 13.3 0.0 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|284172589|ref|YP_003405971.1| - 0.14 12.7 1.4 0.35 11.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|284172589|ref|YP_003405971.1| - 0.16 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|284172589|ref|YP_003405971.1| - 0.17 11.5 0.5 1.6 8.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284172589|ref|YP_003405971.1| - 0.2 11.4 0.1 1.4 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SBP_bac_1 PF01547.25 gi|284172590|ref|YP_003405972.1| - 4.4e-26 92.6 10.3 4.4e-26 92.6 10.3 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|284172590|ref|YP_003405972.1| - 2.6e-23 83.2 10.7 2.6e-23 83.2 10.7 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284172590|ref|YP_003405972.1| - 0.0019 17.9 2.6 0.0036 17.1 2.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|284172591|ref|YP_003405973.1| - 5.2e-17 62.2 18.5 5.2e-17 62.2 18.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284172592|ref|YP_003405974.1| - 6.1e-19 68.5 15.5 6.1e-19 68.5 15.5 1.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Peptidase_M24 PF00557.24 gi|284172593|ref|YP_003405975.1| - 4.7e-09 36.2 0.1 8.5e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Glyco_hydro_2_N PF02837.18 gi|284172594|ref|YP_003405976.1| - 4.3e-22 78.8 0.4 1.8e-21 76.8 0.4 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|284172594|ref|YP_003405976.1| - 1.2e-16 61.3 0.0 7.4e-16 58.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.17 gi|284172594|ref|YP_003405976.1| - 6.1e-16 58.4 0.0 6.1e-15 55.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain BetaGal_dom4_5 PF13364.6 gi|284172594|ref|YP_003405976.1| - 0.00037 21.0 0.0 0.00095 19.7 0.0 1.7 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Mannosidase_ig PF17786.1 gi|284172594|ref|YP_003405976.1| - 0.049 14.2 0.4 11 6.7 0.0 2.6 2 0 0 2 2 2 0 Mannosidase Ig/CBM-like domain BNR_2 PF13088.6 gi|284172595|ref|YP_003405977.1| - 4.6e-09 36.0 0.0 0.00049 19.5 0.0 2.1 1 1 0 2 2 2 2 BNR repeat-like domain BNR PF02012.20 gi|284172595|ref|YP_003405977.1| - 0.00021 20.8 10.0 0.21 11.7 0.3 4.3 3 0 0 3 3 3 2 BNR/Asp-box repeat Sortilin-Vps10 PF15902.5 gi|284172595|ref|YP_003405977.1| - 0.00032 19.6 2.3 0.034 12.9 0.1 2.7 3 0 0 3 3 3 2 Sortilin, neurotensin receptor 3, CyRPA PF18638.1 gi|284172595|ref|YP_003405977.1| - 0.18 10.9 0.1 6.2 5.9 0.0 2.7 3 0 0 3 3 3 0 Cysteine-Rich Protective Antigen 6 bladed domain adh_short_C2 PF13561.6 gi|284172596|ref|YP_003405978.1| - 2.5e-63 213.8 1.2 6.6e-62 209.1 1.2 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172596|ref|YP_003405978.1| - 5e-53 179.5 0.3 6.4e-53 179.1 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172596|ref|YP_003405978.1| - 2.9e-15 56.6 0.1 3.8e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172596|ref|YP_003405978.1| - 3.2e-05 23.5 0.1 6.3e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|284172596|ref|YP_003405978.1| - 0.0025 17.2 0.0 0.004 16.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|284172596|ref|YP_003405978.1| - 0.004 16.3 0.3 0.0056 15.8 0.3 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_7 PF13241.6 gi|284172596|ref|YP_003405978.1| - 0.015 15.7 0.0 0.036 14.5 0.0 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Polysacc_synt_2 PF02719.15 gi|284172596|ref|YP_003405978.1| - 0.054 12.6 0.0 0.06 12.5 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Glyco_hydro_43 PF04616.14 gi|284172598|ref|YP_003405980.1| - 2e-56 191.5 8.1 2.7e-56 191.0 8.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.6 gi|284172598|ref|YP_003405980.1| - 1.7e-55 185.7 27.5 1.3e-25 90.0 4.1 3.3 2 1 2 4 4 4 3 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284172598|ref|YP_003405980.1| - 1.6e-13 51.0 4.6 7.2e-13 48.9 4.7 2.0 1 1 0 1 1 1 1 Ricin-type beta-trefoil lectin domain TAT_signal PF10518.9 gi|284172598|ref|YP_003405980.1| - 0.066 13.1 1.4 0.12 12.3 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2778 PF10908.8 gi|284172598|ref|YP_003405980.1| - 0.084 13.2 0.8 1.2 9.5 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2778) GFO_IDH_MocA PF01408.22 gi|284172599|ref|YP_003405981.1| - 6.6e-22 78.6 0.0 1.2e-21 77.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172599|ref|YP_003405981.1| - 0.081 12.9 0.0 0.26 11.3 0.0 1.9 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain ABC_tran PF00005.27 gi|284172600|ref|YP_003405982.1| - 6.3e-32 111.0 0.0 1.1e-31 110.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172600|ref|YP_003405982.1| - 3.3e-12 47.0 0.0 4.1e-11 43.5 0.0 2.8 3 0 0 3 3 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|284172600|ref|YP_003405982.1| - 1.1e-09 38.3 1.3 3.3e-09 36.8 0.2 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|284172600|ref|YP_003405982.1| - 1.7e-07 31.4 0.1 0.013 15.4 0.0 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|284172600|ref|YP_003405982.1| - 3.2e-06 27.6 0.5 2.2e-05 24.9 0.0 2.7 3 0 0 3 3 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|284172600|ref|YP_003405982.1| - 0.00018 21.0 0.4 0.006 16.0 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|284172600|ref|YP_003405982.1| - 0.00056 19.9 0.0 0.00085 19.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|284172600|ref|YP_003405982.1| - 0.00097 19.4 0.3 0.0023 18.2 0.3 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284172600|ref|YP_003405982.1| - 0.0016 18.4 0.0 0.0036 17.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 gi|284172600|ref|YP_003405982.1| - 0.0016 18.7 0.1 0.013 15.8 0.1 2.3 2 0 0 2 2 2 1 TOBE domain AAA PF00004.29 gi|284172600|ref|YP_003405982.1| - 0.0047 17.3 0.1 0.018 15.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284172600|ref|YP_003405982.1| - 0.0082 16.5 0.1 0.014 15.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|284172600|ref|YP_003405982.1| - 0.027 14.1 0.0 0.52 9.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284172600|ref|YP_003405982.1| - 0.029 14.1 0.0 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284172600|ref|YP_003405982.1| - 0.05 13.3 0.2 0.091 12.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain BH4 PF02180.17 gi|284172600|ref|YP_003405982.1| - 0.067 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Bcl-2 homology region 4 Mg_chelatase PF01078.21 gi|284172600|ref|YP_003405982.1| - 0.095 12.1 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|284172600|ref|YP_003405982.1| - 0.11 13.0 0.0 0.4 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284172600|ref|YP_003405982.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|284172600|ref|YP_003405982.1| - 0.17 11.9 0.6 0.44 10.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|284172601|ref|YP_003405983.1| - 2.7e-35 121.9 0.0 4.8e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172601|ref|YP_003405983.1| - 2.7e-08 34.5 0.0 1.3e-07 32.3 0.0 2.3 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|284172601|ref|YP_003405983.1| - 7.8e-07 29.2 0.0 0.03 14.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|284172601|ref|YP_003405983.1| - 4.8e-06 26.7 1.9 1.2e-05 25.4 1.0 2.2 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|284172601|ref|YP_003405983.1| - 0.00013 21.4 0.0 0.054 12.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|284172601|ref|YP_003405983.1| - 0.00016 21.6 0.0 0.00027 20.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|284172601|ref|YP_003405983.1| - 0.00061 20.1 0.2 0.0014 18.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284172601|ref|YP_003405983.1| - 0.0013 18.6 0.0 0.0036 17.2 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|284172601|ref|YP_003405983.1| - 0.0015 18.9 0.1 0.0033 17.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|284172601|ref|YP_003405983.1| - 0.0019 18.0 0.0 0.061 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|284172601|ref|YP_003405983.1| - 0.0061 16.8 0.0 0.016 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284172601|ref|YP_003405983.1| - 0.0084 15.8 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MIT_C PF16565.5 gi|284172601|ref|YP_003405983.1| - 0.03 14.3 0.0 0.074 13.0 0.0 1.6 2 0 0 2 2 2 0 Phospholipase D-like domain at C-terminus of MIT AAA_25 PF13481.6 gi|284172601|ref|YP_003405983.1| - 0.036 13.6 0.1 1.4 8.5 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|284172601|ref|YP_003405983.1| - 0.048 14.1 0.0 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284172601|ref|YP_003405983.1| - 0.067 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|284172601|ref|YP_003405983.1| - 0.069 13.6 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|284172601|ref|YP_003405983.1| - 0.085 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|284172601|ref|YP_003405983.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|284172601|ref|YP_003405983.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit RNA_helicase PF00910.22 gi|284172601|ref|YP_003405983.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|284172601|ref|YP_003405983.1| - 0.13 12.4 0.3 0.31 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|284172602|ref|YP_003405984.1| - 2.9e-09 36.9 25.2 2.9e-09 36.9 25.2 2.5 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284172603|ref|YP_003405985.1| - 1.6e-20 73.6 13.3 1.6e-20 73.6 13.3 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|284172604|ref|YP_003405986.1| - 1.2e-21 77.8 2.0 1.5e-21 77.5 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284172604|ref|YP_003405986.1| - 5.9e-12 46.2 2.3 7.6e-12 45.8 2.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Peripla_BP_7 PF18610.1 gi|284172604|ref|YP_003405986.1| - 0.057 13.6 0.0 1 9.6 0.0 2.6 2 0 0 2 2 2 0 Periplasmic binding protein domain FAA_hydrolase PF01557.18 gi|284172605|ref|YP_003405987.1| - 7.9e-22 78.0 0.0 1.1e-20 74.3 0.0 2.0 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_hydro_43 PF04616.14 gi|284172606|ref|YP_003405988.1| - 4.8e-48 163.9 8.1 6.2e-48 163.6 8.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.6 gi|284172606|ref|YP_003405988.1| - 2.1e-33 114.9 3.9 3.2e-20 72.6 0.2 2.6 2 0 0 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284172606|ref|YP_003405988.1| - 4.4e-12 46.3 0.2 7.3e-12 45.7 0.2 1.4 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin domain Glyco_hydro_32N PF00251.20 gi|284172606|ref|YP_003405988.1| - 0.19 11.3 0.1 0.19 11.3 0.1 2.4 2 1 1 3 3 3 0 Glycosyl hydrolases family 32 N-terminal domain DEP PF00610.21 gi|284172609|ref|YP_003405991.1| - 0.21 11.7 0.0 0.49 10.5 0.0 1.5 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) DDE_3 PF13358.6 gi|284172610|ref|YP_003405992.1| - 6.6e-37 126.5 0.0 7.4e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.26 gi|284172610|ref|YP_003405992.1| - 0.0086 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.6 gi|284172611|ref|YP_003405993.1| - 9e-22 76.5 1.9 3e-20 71.6 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn helix HTH_32 PF13565.6 gi|284172611|ref|YP_003405993.1| - 6.9e-13 49.0 1.6 5.6e-12 46.1 0.1 2.4 3 0 0 3 3 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|284172611|ref|YP_003405993.1| - 6e-11 42.3 0.5 6e-11 42.3 0.5 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|284172611|ref|YP_003405993.1| - 1.3e-10 41.1 0.3 5.1e-10 39.2 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|284172611|ref|YP_003405993.1| - 1.5e-07 31.0 0.2 3.2e-07 30.0 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|284172611|ref|YP_003405993.1| - 0.00068 19.6 0.0 0.001 19.0 0.0 1.4 1 1 0 1 1 1 1 ECF sigma factor HTH_Tnp_IS630 PF01710.16 gi|284172611|ref|YP_003405993.1| - 0.00079 19.5 0.1 0.0014 18.7 0.1 1.4 1 0 0 1 1 1 1 Transposase HTH_11 PF08279.12 gi|284172611|ref|YP_003405993.1| - 0.0067 16.4 0.2 0.036 14.0 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_36 PF13730.6 gi|284172611|ref|YP_003405993.1| - 0.0087 16.0 0.1 0.023 14.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|284172611|ref|YP_003405993.1| - 0.015 15.4 0.1 0.023 14.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Terminase_5 PF06056.12 gi|284172611|ref|YP_003405993.1| - 0.017 15.0 0.2 0.032 14.1 0.2 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TctC PF03401.14 gi|284172611|ref|YP_003405993.1| - 0.027 13.5 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor HTH_Tnp_4 PF13613.6 gi|284172611|ref|YP_003405993.1| - 0.036 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_Tc3_2 PF01498.18 gi|284172611|ref|YP_003405993.1| - 0.042 14.1 0.1 0.86 9.9 0.0 2.7 3 1 1 4 4 4 0 Transposase HTH_psq PF05225.16 gi|284172611|ref|YP_003405993.1| - 0.075 12.8 0.0 0.24 11.1 0.0 1.9 2 1 0 2 2 1 0 helix-turn-helix, Psq domain TrmB PF01978.19 gi|284172611|ref|YP_003405993.1| - 0.075 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284172611|ref|YP_003405993.1| - 0.089 12.7 0.0 0.21 11.6 0.0 1.5 2 0 0 2 2 1 0 MarR family HTH_7 PF02796.15 gi|284172611|ref|YP_003405993.1| - 0.12 12.5 0.2 23 5.2 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Luteo_P1-P2 PF08467.10 gi|284172611|ref|YP_003405993.1| - 0.12 11.6 0.3 0.16 11.2 0.3 1.2 1 0 0 1 1 1 0 Luteovirus RNA polymerase P1-P2/replicase HTH_Tnp_1 PF01527.20 gi|284172611|ref|YP_003405993.1| - 0.14 12.5 2.0 0.2 12.0 0.4 2.1 2 1 0 2 2 2 0 Transposase HTH_17 PF12728.7 gi|284172611|ref|YP_003405993.1| - 0.15 12.2 0.6 0.62 10.3 0.6 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|284172611|ref|YP_003405993.1| - 0.16 12.2 1.0 0.22 11.8 0.1 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_38 PF13936.6 gi|284172611|ref|YP_003405993.1| - 0.23 11.3 1.9 0.24 11.2 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain Glyoxalase PF00903.25 gi|284172613|ref|YP_003405995.1| - 1.5e-13 51.0 0.0 1.8e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|284172613|ref|YP_003405995.1| - 2.7e-05 24.1 0.0 4.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|284172613|ref|YP_003405995.1| - 0.00014 22.6 0.2 0.00028 21.7 0.2 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain DUF1471 PF07338.13 gi|284172613|ref|YP_003405995.1| - 0.14 12.2 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Response_reg PF00072.24 gi|284172615|ref|YP_003405997.1| - 4.4e-22 78.4 0.0 5.1e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Acyltransferase PF01553.21 gi|284172616|ref|YP_003405998.1| - 0.066 12.8 0.0 0.066 12.8 0.0 1.0 1 0 0 1 1 1 0 Acyltransferase Anti-TRAP PF15777.5 gi|284172618|ref|YP_003406000.1| - 0.13 12.3 0.9 0.9 9.6 0.2 2.2 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn_Tnp_IS1 PF03811.13 gi|284172618|ref|YP_003406000.1| - 2.1 8.1 6.3 48 3.8 0.5 3.2 3 0 0 3 3 3 0 InsA N-terminal domain DnaJ PF00226.31 gi|284172621|ref|YP_003406003.1| - 1.1e-05 25.4 0.2 1.4e-05 25.1 0.2 1.1 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|284172621|ref|YP_003406003.1| - 0.041 13.8 0.1 0.059 13.3 0.1 1.3 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF2250 PF10007.9 gi|284172622|ref|YP_003406004.1| - 0.00067 19.7 0.0 0.0071 16.4 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|284172622|ref|YP_003406004.1| - 0.016 15.3 0.0 0.022 14.8 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain MarR_2 PF12802.7 gi|284172622|ref|YP_003406004.1| - 0.085 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Fic PF02661.18 gi|284172624|ref|YP_003406006.1| - 2.2e-07 31.7 0.0 3.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Fic/DOC family TrmB PF01978.19 gi|284172625|ref|YP_003406007.1| - 1e-08 34.9 1.7 1.8e-07 31.0 0.9 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284172625|ref|YP_003406007.1| - 0.0029 17.6 0.2 0.009 16.1 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284172625|ref|YP_003406007.1| - 0.0063 17.0 0.5 0.27 11.8 0.1 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain Response_reg PF00072.24 gi|284172626|ref|YP_003406008.1| - 4.9e-16 58.9 0.1 5.8e-16 58.7 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HrcA_DNA-bdg PF03444.15 gi|284172627|ref|YP_003406009.1| - 7e-37 124.9 0.2 1.1e-36 124.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|284172627|ref|YP_003406009.1| - 4.2e-09 36.6 0.0 7.1e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|284172627|ref|YP_003406009.1| - 9e-07 28.8 0.0 1.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|284172627|ref|YP_003406009.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Put_DNA-bind_N PF06971.13 gi|284172627|ref|YP_003406009.1| - 0.032 14.2 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Rio2_N PF09202.11 gi|284172627|ref|YP_003406009.1| - 0.08 13.2 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_20 PF12840.7 gi|284172627|ref|YP_003406009.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|284172627|ref|YP_003406009.1| - 0.13 11.8 0.2 0.36 10.4 0.2 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 gi|284172629|ref|YP_003406011.1| - 0.00081 18.9 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284172629|ref|YP_003406011.1| - 0.0068 16.3 0.0 0.0084 16.0 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284172629|ref|YP_003406011.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|284172629|ref|YP_003406011.1| - 0.036 13.9 0.0 0.045 13.6 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit H-kinase_dim PF02895.14 gi|284172631|ref|YP_003406013.1| - 0.2 12.1 0.4 0.93 9.9 0.0 2.1 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain UbiA PF01040.18 gi|284172633|ref|YP_003406015.1| - 4.2e-26 91.8 22.7 4.2e-26 91.8 22.7 1.9 1 1 1 2 2 2 1 UbiA prenyltransferase family DPM3 PF08285.11 gi|284172633|ref|YP_003406015.1| - 0.062 13.5 0.4 0.062 13.5 0.4 3.1 4 0 0 4 4 4 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) COX7B PF05392.11 gi|284172633|ref|YP_003406015.1| - 0.11 12.1 0.2 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase chain VIIB HTH_20 PF12840.7 gi|284172634|ref|YP_003406016.1| - 0.069 13.2 0.7 0.39 10.8 0.7 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172634|ref|YP_003406016.1| - 0.092 12.6 0.6 5.2 7.0 0.2 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF2207 PF09972.9 gi|284172636|ref|YP_003406018.1| - 0.0081 15.0 0.0 0.0081 15.0 0.0 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) MNHE PF01899.16 gi|284172636|ref|YP_003406018.1| - 3.5 7.4 9.5 0.23 11.2 0.2 2.3 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit DUF4399 PF14347.6 gi|284172638|ref|YP_003406020.1| - 1.7e-24 86.0 0.0 2.4e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) TAT_signal PF10518.9 gi|284172638|ref|YP_003406020.1| - 0.024 14.5 0.4 0.039 13.8 0.4 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2238 PF09997.9 gi|284172639|ref|YP_003406021.1| - 0.0007 19.4 6.9 0.037 13.8 6.9 2.2 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Glt_symporter PF03616.14 gi|284172639|ref|YP_003406021.1| - 0.0012 17.6 2.6 0.0015 17.3 2.6 1.1 1 0 0 1 1 1 1 Sodium/glutamate symporter MitoNEET_N PF10660.9 gi|284172639|ref|YP_003406021.1| - 0.014 15.4 0.0 0.044 13.8 0.0 1.9 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus Abhydrolase_9_N PF15420.6 gi|284172639|ref|YP_003406021.1| - 1.1 9.2 9.9 6.4 6.7 9.3 2.1 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus RRXRR PF14239.6 gi|284172640|ref|YP_003406022.1| - 0.64 9.8 3.6 2.4 8.0 2.1 2.1 2 0 0 2 2 2 0 RRXRR protein RHH_1 PF01402.21 gi|284172641|ref|YP_003406023.1| - 0.0055 16.6 1.4 0.011 15.7 1.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.15 gi|284172641|ref|YP_003406023.1| - 0.012 15.4 0.1 0.099 12.5 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Lar_restr_allev PF14354.6 gi|284172642|ref|YP_003406024.1| - 0.057 13.8 0.1 0.072 13.5 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|284172643|ref|YP_003406025.1| - 0.0088 16.2 0.7 1.1 9.5 0.0 2.1 2 0 0 2 2 2 2 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|284172643|ref|YP_003406025.1| - 0.17 12.0 3.2 0.31 11.2 2.8 1.6 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|284172643|ref|YP_003406025.1| - 0.27 11.2 3.8 1.3 9.1 3.8 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.6 gi|284172643|ref|YP_003406025.1| - 0.55 9.6 5.8 0.87 9.0 0.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger Acetyltransf_3 PF13302.7 gi|284172644|ref|YP_003406026.1| - 7.5e-16 59.1 0.1 9.9e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain 3HCDH_RFF PF18321.1 gi|284172644|ref|YP_003406026.1| - 0.11 12.9 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DUF1440 PF07274.12 gi|284172645|ref|YP_003406027.1| - 0.031 14.6 2.6 0.038 14.3 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) YqhR PF11085.8 gi|284172645|ref|YP_003406027.1| - 0.078 12.9 0.8 0.15 12.0 0.7 1.5 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF2456 PF10445.9 gi|284172645|ref|YP_003406027.1| - 1.1 9.4 4.9 7 6.8 0.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2456) DoxX PF07681.12 gi|284172646|ref|YP_003406028.1| - 3.3e-11 43.6 6.5 3.3e-11 43.6 6.5 1.5 2 0 0 2 2 2 1 DoxX HxlR PF01638.17 gi|284172647|ref|YP_003406029.1| - 6.3e-26 90.1 0.0 7.7e-26 89.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|284172647|ref|YP_003406029.1| - 0.00059 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|284172647|ref|YP_003406029.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|284172648|ref|YP_003406030.1| - 4.1e-05 23.0 0.1 0.00011 21.7 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284172648|ref|YP_003406030.1| - 6.7e-05 22.8 0.1 0.00015 21.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|284172648|ref|YP_003406030.1| - 0.00043 19.9 2.2 0.0005 19.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|284172648|ref|YP_003406030.1| - 0.0021 17.9 0.9 0.0076 16.1 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|284172648|ref|YP_003406030.1| - 0.0026 17.5 1.4 0.0074 16.1 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 gi|284172648|ref|YP_003406030.1| - 0.0047 17.0 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix MerR PF00376.23 gi|284172648|ref|YP_003406030.1| - 0.0054 16.5 0.1 0.018 14.8 0.1 1.9 1 1 0 1 1 1 1 MerR family regulatory protein DUF3516 PF12029.8 gi|284172648|ref|YP_003406030.1| - 0.0072 15.5 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3516) HTH_36 PF13730.6 gi|284172648|ref|YP_003406030.1| - 0.015 15.3 0.0 0.49 10.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172648|ref|YP_003406030.1| - 0.016 15.0 2.5 0.028 14.2 1.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284172648|ref|YP_003406030.1| - 0.05 13.6 0.6 0.31 11.0 0.7 2.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|284172648|ref|YP_003406030.1| - 0.093 12.5 0.2 0.17 11.6 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_31 PF13560.6 gi|284172648|ref|YP_003406030.1| - 0.094 13.1 0.2 0.094 13.1 0.2 2.8 3 1 1 4 4 4 0 Helix-turn-helix domain YojJ PF10372.9 gi|284172649|ref|YP_003406031.1| - 0.12 12.4 0.0 22 5.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus Syntaxin_2 PF14523.6 gi|284172649|ref|YP_003406031.1| - 0.13 12.6 0.1 0.42 11.0 0.1 1.8 1 1 0 1 1 1 0 Syntaxin-like protein SLATT_5 PF18160.1 gi|284172649|ref|YP_003406031.1| - 2.7 7.3 4.0 5.8 6.2 3.0 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF4177 PF13783.6 gi|284172650|ref|YP_003406032.1| - 1.1e-06 28.9 0.1 1.6e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) ArsP_1 PF03773.13 gi|284172651|ref|YP_003406033.1| - 5.2e-92 308.1 7.6 6.4e-92 307.8 7.6 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|284172651|ref|YP_003406033.1| - 4.4e-16 58.7 2.2 4.4e-16 58.7 2.2 1.8 2 0 0 2 2 2 1 YHS domain zf-FCS PF06467.14 gi|284172651|ref|YP_003406033.1| - 0.00016 21.5 0.8 0.00033 20.5 0.8 1.5 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|284172651|ref|YP_003406033.1| - 0.072 13.4 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain Saf_2TM PF18303.1 gi|284172651|ref|YP_003406033.1| - 2.5 7.7 5.2 0.69 9.5 0.8 2.3 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain DUF2890 PF11081.8 gi|284172654|ref|YP_003406036.1| - 0.27 11.4 2.3 0.4 10.8 2.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) Cyt_bd_oxida_I PF01654.17 gi|284172655|ref|YP_003406037.1| - 1.3e-144 482.0 23.5 1.5e-144 481.8 23.5 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I DUF3624 PF12292.8 gi|284172655|ref|YP_003406037.1| - 0.084 13.3 1.2 0.23 11.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) Cyt_bd_oxida_II PF02322.15 gi|284172656|ref|YP_003406038.1| - 1.3e-75 254.6 29.0 1.5e-75 254.4 29.0 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF1673 PF07895.11 gi|284172656|ref|YP_003406038.1| - 0.0052 16.5 2.5 0.0052 16.5 2.5 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1673) HTH_20 PF12840.7 gi|284172657|ref|YP_003406039.1| - 0.043 13.9 0.1 0.13 12.3 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L30 PF00327.20 gi|284172657|ref|YP_003406039.1| - 0.15 11.9 0.0 0.57 10.1 0.0 2.0 1 1 0 1 1 1 0 Ribosomal protein L30p/L7e Elf1 PF05129.13 gi|284172659|ref|YP_003406041.1| - 0.012 15.6 0.3 0.015 15.4 0.3 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_SprT PF17283.2 gi|284172659|ref|YP_003406041.1| - 0.054 13.4 3.6 0.11 12.4 3.6 1.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain HalOD1 PF18545.1 gi|284172660|ref|YP_003406042.1| - 6.6e-17 61.5 0.6 9.6e-17 61.0 0.6 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 Big_2 PF02368.18 gi|284172660|ref|YP_003406042.1| - 0.1 12.5 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) Glyco_trans_4_4 PF13579.6 gi|284172661|ref|YP_003406043.1| - 1.6e-14 54.6 7.2 6.9e-14 52.6 6.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|284172661|ref|YP_003406043.1| - 1.2e-13 51.4 0.3 3.3e-13 50.0 0.3 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|284172661|ref|YP_003406043.1| - 4.3e-11 42.6 0.0 1.1e-10 41.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284172661|ref|YP_003406043.1| - 1.7e-08 35.0 0.1 1.2e-07 32.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|284172661|ref|YP_003406043.1| - 0.074 13.1 0.0 0.18 11.8 0.0 1.6 1 1 1 2 2 2 0 Glycosyl transferase 4-like DUF354 PF04007.12 gi|284172662|ref|YP_003406044.1| - 3.5e-10 39.5 0.0 5.5e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|284172662|ref|YP_003406044.1| - 0.0053 16.8 0.0 0.0084 16.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|284172662|ref|YP_003406044.1| - 0.015 15.3 0.5 0.032 14.2 0.5 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 CARDB PF07705.11 gi|284172663|ref|YP_003406045.1| - 0.0095 16.2 3.5 0.081 13.2 0.6 2.8 2 1 0 2 2 2 2 CARDB DDE_5 PF13546.6 gi|284172665|ref|YP_003406047.1| - 4e-06 26.4 0.0 4.1e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Sigma70_r4 PF04545.16 gi|284172665|ref|YP_003406047.1| - 0.0042 16.6 0.0 0.0043 16.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HNH PF01844.23 gi|284172666|ref|YP_003406048.1| - 9.5e-11 41.7 3.1 1.5e-10 41.1 3.1 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.6 gi|284172666|ref|YP_003406048.1| - 0.00023 21.2 0.7 0.001 19.2 0.7 1.9 1 1 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|284172666|ref|YP_003406048.1| - 0.00076 19.3 1.5 0.0017 18.1 1.5 1.7 1 1 0 1 1 1 1 HNH endonuclease zf-UDP PF14569.6 gi|284172666|ref|YP_003406048.1| - 0.015 15.4 0.7 0.16 12.1 0.7 2.0 1 1 0 1 1 1 0 Zinc-binding RING-finger Sgf11 PF08209.11 gi|284172666|ref|YP_003406048.1| - 0.039 13.5 0.5 0.039 13.5 0.5 1.8 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_7 PF02591.15 gi|284172666|ref|YP_003406048.1| - 0.3 11.3 0.1 0.3 11.3 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Sortilin-Vps10 PF15902.5 gi|284172667|ref|YP_003406049.1| - 2.7e-15 56.1 0.0 9.8e-10 37.8 0.0 2.4 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|284172667|ref|YP_003406049.1| - 1.2e-11 42.7 14.9 0.043 13.8 0.1 6.4 6 0 0 6 6 6 4 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|284172667|ref|YP_003406049.1| - 5.3e-07 29.2 2.4 0.018 14.3 0.1 3.2 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR_6 PF15899.5 gi|284172667|ref|YP_003406049.1| - 1.9e-05 24.3 0.1 1.1 9.5 0.0 4.6 4 0 0 4 4 4 1 BNR-Asp box repeat DUF4185 PF13810.6 gi|284172667|ref|YP_003406049.1| - 0.0012 18.2 3.6 4.5 6.4 0.8 3.9 2 2 1 4 4 4 3 Domain of unknown function (DUF4185) BNR_2 PF13088.6 gi|284172667|ref|YP_003406049.1| - 0.0019 17.5 5.5 3.2 7.0 1.6 4.6 1 1 2 4 4 4 1 BNR repeat-like domain Mo-co_dimer PF03404.16 gi|284172667|ref|YP_003406049.1| - 2.9 7.9 5.3 36 4.4 0.3 3.5 2 2 2 4 4 4 0 Mo-co oxidoreductase dimerisation domain BNR_3 PF13859.6 gi|284172667|ref|YP_003406049.1| - 4.1 6.6 4.5 39 3.4 0.7 3.3 3 1 0 3 3 3 0 BNR repeat-like domain BRCT_2 PF16589.5 gi|284172668|ref|YP_003406050.1| - 0.065 13.6 0.0 0.08 13.4 0.0 1.2 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain Pecanex_C PF05041.15 gi|284172669|ref|YP_003406051.1| - 0.058 13.0 0.0 0.07 12.7 0.0 1.1 1 0 0 1 1 1 0 Pecanex protein (C-terminus) Aldedh PF00171.22 gi|284172670|ref|YP_003406052.1| - 3.2e-165 550.1 0.0 3.8e-165 549.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Cupin_2 PF07883.11 gi|284172671|ref|YP_003406053.1| - 4.4e-19 68.0 0.4 5.9e-19 67.6 0.4 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|284172671|ref|YP_003406053.1| - 5.9e-06 25.9 0.0 7.4e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|284172671|ref|YP_003406053.1| - 1.5e-05 24.9 0.1 1.8e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|284172671|ref|YP_003406053.1| - 0.0006 19.7 0.0 0.00098 19.0 0.0 1.3 1 1 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|284172671|ref|YP_003406053.1| - 0.0026 17.4 0.0 0.004 16.8 0.0 1.3 1 1 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|284172671|ref|YP_003406053.1| - 0.025 14.8 0.0 0.031 14.5 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_7 PF12973.7 gi|284172671|ref|YP_003406053.1| - 0.029 14.3 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain CDO_I PF05995.12 gi|284172671|ref|YP_003406053.1| - 0.071 12.4 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 Cysteine dioxygenase type I Cupin_6 PF12852.7 gi|284172671|ref|YP_003406053.1| - 0.085 12.6 0.1 0.097 12.4 0.1 1.1 1 0 0 1 1 1 0 Cupin EutQ PF06249.12 gi|284172671|ref|YP_003406053.1| - 0.1 12.4 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Auxin_BP PF02041.16 gi|284172671|ref|YP_003406053.1| - 0.18 11.5 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein NMT1 PF09084.11 gi|284172672|ref|YP_003406054.1| - 1.1e-06 28.8 0.0 0.0016 18.4 0.0 2.7 2 1 0 2 2 2 2 NMT1/THI5 like NMT1_2 PF13379.6 gi|284172672|ref|YP_003406054.1| - 0.0085 15.8 0.0 0.23 11.1 0.0 2.2 2 0 0 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 gi|284172672|ref|YP_003406054.1| - 0.13 11.6 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|284172673|ref|YP_003406055.1| - 1.5e-07 31.6 0.0 2e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|284172673|ref|YP_003406055.1| - 0.00012 21.6 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|284172673|ref|YP_003406055.1| - 0.0004 20.1 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|284172673|ref|YP_003406055.1| - 0.027 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family VitK2_biosynth PF02621.14 gi|284172673|ref|YP_003406055.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 1 0 1 1 1 0 Menaquinone biosynthesis NMT1 PF09084.11 gi|284172674|ref|YP_003406056.1| - 5.2e-36 124.6 0.0 7.9e-36 124.0 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|284172674|ref|YP_003406056.1| - 7.2e-07 29.0 0.1 1e-06 28.5 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|284172674|ref|YP_003406056.1| - 0.00073 19.3 0.1 0.016 14.9 0.1 2.6 1 1 0 1 1 1 1 NMT1-like family Glyoxalase PF00903.25 gi|284172675|ref|YP_003406057.1| - 1.8e-11 44.3 0.6 6.3e-11 42.6 0.6 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284172675|ref|YP_003406057.1| - 3.2e-05 24.6 0.6 0.00018 22.2 0.6 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|284172675|ref|YP_003406057.1| - 0.019 14.9 0.0 0.055 13.4 0.0 1.8 1 1 0 1 1 1 0 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|284172675|ref|YP_003406057.1| - 0.021 15.1 0.1 0.029 14.6 0.1 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TrmB PF01978.19 gi|284172676|ref|YP_003406058.1| - 1.9e-05 24.4 0.0 3.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284172676|ref|YP_003406058.1| - 0.00018 21.5 0.0 0.00039 20.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172676|ref|YP_003406058.1| - 0.0067 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|284172676|ref|YP_003406058.1| - 0.052 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284172676|ref|YP_003406058.1| - 0.067 12.7 0.0 0.067 12.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Dimerisation2 PF16864.5 gi|284172676|ref|YP_003406058.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HalX PF08663.10 gi|284172676|ref|YP_003406058.1| - 0.48 10.8 4.3 0.33 11.3 1.2 2.0 1 1 1 2 2 2 0 HalX domain ATPgrasp_Ter PF15632.6 gi|284172679|ref|YP_003406061.1| - 1.1e-05 25.2 0.0 2.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|284172679|ref|YP_003406061.1| - 0.0015 18.6 0.0 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|284172679|ref|YP_003406061.1| - 0.0064 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GATase_7 PF13537.6 gi|284172680|ref|YP_003406062.1| - 2.8e-11 43.4 0.0 6.1e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Asn_synthase PF00733.21 gi|284172680|ref|YP_003406062.1| - 7.2e-08 32.5 0.0 1.4e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase GATase_6 PF13522.6 gi|284172680|ref|YP_003406062.1| - 1.1e-07 32.1 0.0 2.7e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|284172680|ref|YP_003406062.1| - 4.3e-05 23.1 0.0 6.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Aluminium induced protein GvpK PF05121.12 gi|284172681|ref|YP_003406063.1| - 0.076 13.1 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Gas vesicle protein K Polysacc_lyase PF14099.6 gi|284172683|ref|YP_003406065.1| - 0.0057 16.5 0.1 0.0064 16.4 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide lyase Polysacc_deac_1 PF01522.21 gi|284172685|ref|YP_003406067.1| - 0.00015 21.7 0.3 0.0047 16.8 0.0 2.6 3 0 0 3 3 3 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|284172685|ref|YP_003406067.1| - 0.00027 20.7 0.0 0.017 14.8 0.0 2.5 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2334) DoxX PF07681.12 gi|284172686|ref|YP_003406068.1| - 0.033 14.8 0.1 0.07 13.7 0.1 1.4 1 0 0 1 1 1 0 DoxX DUF2417 PF10329.9 gi|284172686|ref|YP_003406068.1| - 0.05 13.0 0.0 0.064 12.7 0.0 1.1 1 0 0 1 1 1 0 Region of unknown function (DUF2417) zf-RING_7 PF02591.15 gi|284172687|ref|YP_003406069.1| - 0.066 13.4 1.4 4.8 7.4 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|284172687|ref|YP_003406069.1| - 0.24 11.5 3.2 0.53 10.4 3.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|284172687|ref|YP_003406069.1| - 1.3 9.1 5.6 11 6.0 5.6 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_10 PF04967.12 gi|284172688|ref|YP_003406070.1| - 3.6e-16 58.7 0.2 1.6e-14 53.4 0.2 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.6 gi|284172688|ref|YP_003406070.1| - 1.4e-08 34.1 0.2 0.0023 17.4 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|284172688|ref|YP_003406070.1| - 2e-08 33.7 0.0 1.5e-06 27.7 0.0 2.6 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|284172688|ref|YP_003406070.1| - 5.9e-08 32.3 2.4 0.01 15.6 0.1 3.7 4 0 0 4 4 3 2 Homeodomain-like domain MerR PF00376.23 gi|284172688|ref|YP_003406070.1| - 3.4e-07 29.9 0.4 0.0012 18.6 0.0 2.8 2 0 0 2 2 2 2 MerR family regulatory protein HTH_11 PF08279.12 gi|284172688|ref|YP_003406070.1| - 4.2e-07 29.8 0.3 0.0046 16.9 0.0 2.6 2 0 0 2 2 2 2 HTH domain HTH_5 PF01022.20 gi|284172688|ref|YP_003406070.1| - 6.2e-07 29.2 0.0 0.0002 21.1 0.0 3.4 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|284172688|ref|YP_003406070.1| - 1.6e-06 27.5 0.3 0.052 13.1 0.0 2.9 2 0 0 2 2 2 2 Sigma-70, region 4 GntR PF00392.21 gi|284172688|ref|YP_003406070.1| - 5.8e-06 25.9 0.8 5.8e-05 22.7 0.0 2.9 3 0 0 3 3 2 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|284172688|ref|YP_003406070.1| - 1.8e-05 24.3 0.4 0.0045 16.6 0.0 3.1 3 1 0 3 3 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|284172688|ref|YP_003406070.1| - 2.9e-05 24.1 0.8 0.00085 19.3 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284172688|ref|YP_003406070.1| - 5.8e-05 22.9 0.6 0.074 12.9 0.0 3.1 2 1 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|284172688|ref|YP_003406070.1| - 6.2e-05 22.7 0.8 0.15 11.9 0.0 3.2 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_3 PF01381.22 gi|284172688|ref|YP_003406070.1| - 8.2e-05 22.6 0.0 0.72 10.0 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix TetR_N PF00440.23 gi|284172688|ref|YP_003406070.1| - 0.00049 19.8 0.0 0.4 10.5 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.6 gi|284172688|ref|YP_003406070.1| - 0.00069 19.5 0.9 0.39 10.7 0.0 2.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|284172688|ref|YP_003406070.1| - 0.0016 18.4 1.4 1.5 8.9 0.1 3.2 3 0 0 3 3 2 1 Winged helix-turn helix MarR PF01047.22 gi|284172688|ref|YP_003406070.1| - 0.0055 16.6 0.1 0.34 10.9 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 gi|284172688|ref|YP_003406070.1| - 0.011 15.9 0.0 0.28 11.3 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|284172688|ref|YP_003406070.1| - 0.011 16.1 0.1 0.05 14.0 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|284172688|ref|YP_003406070.1| - 0.014 15.7 1.2 0.42 11.0 0.1 3.2 3 0 0 3 3 2 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|284172688|ref|YP_003406070.1| - 0.018 15.1 0.1 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein Rrf2 PF02082.20 gi|284172688|ref|YP_003406070.1| - 0.019 15.3 0.1 3.9 7.9 0.0 3.0 3 0 0 3 3 3 0 Transcriptional regulator HTH_Tnp_1 PF01527.20 gi|284172688|ref|YP_003406070.1| - 0.02 15.2 0.0 0.25 11.7 0.0 2.5 2 0 0 2 2 2 0 Transposase HTH_Tnp_ISL3 PF13542.6 gi|284172688|ref|YP_003406070.1| - 0.022 14.1 0.2 6.7 6.2 0.1 3.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1_2 PF13022.6 gi|284172688|ref|YP_003406070.1| - 0.027 14.6 0.1 0.31 11.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_AsnC-type PF13404.6 gi|284172688|ref|YP_003406070.1| - 0.031 14.1 3.8 0.95 9.3 0.2 3.5 3 1 0 3 3 2 0 AsnC-type helix-turn-helix domain HTH_7 PF02796.15 gi|284172688|ref|YP_003406070.1| - 0.032 14.3 0.0 0.14 12.3 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.11 gi|284172688|ref|YP_003406070.1| - 0.037 14.1 0.1 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 gi|284172688|ref|YP_003406070.1| - 0.054 13.7 0.1 3.1 8.1 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|284172688|ref|YP_003406070.1| - 0.061 13.1 0.7 0.27 11.0 0.1 2.4 2 0 0 2 2 2 0 LexA DNA binding domain HTH_19 PF12844.7 gi|284172688|ref|YP_003406070.1| - 0.062 13.3 0.0 17 5.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284172688|ref|YP_003406070.1| - 0.068 12.9 0.7 8.4 6.2 0.1 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284172688|ref|YP_003406070.1| - 0.075 13.2 0.0 0.38 11.0 0.0 2.2 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.13 gi|284172688|ref|YP_003406070.1| - 0.091 12.9 0.0 18 5.5 0.0 2.5 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_IclR PF09339.10 gi|284172688|ref|YP_003406070.1| - 0.1 12.4 0.8 2.8 7.8 0.0 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|284172688|ref|YP_003406070.1| - 0.11 12.3 0.3 23 5.0 0.0 3.4 4 0 0 4 4 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LacI PF00356.21 gi|284172688|ref|YP_003406070.1| - 0.13 12.1 0.1 5.2 6.9 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family FaeA PF04703.12 gi|284172688|ref|YP_003406070.1| - 0.14 12.5 0.1 4.1 7.9 0.0 2.5 2 0 0 2 2 2 0 FaeA-like protein HTH_36 PF13730.6 gi|284172688|ref|YP_003406070.1| - 0.15 12.0 0.0 0.68 9.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.14 gi|284172689|ref|YP_003406071.1| - 1e-12 47.8 0.4 1.2e-12 47.6 0.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284172689|ref|YP_003406071.1| - 0.017 15.1 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MethyTransf_Reg PF10119.9 gi|284172691|ref|YP_003406073.1| - 0.095 13.4 2.0 11 6.9 0.1 2.8 2 1 0 3 3 3 0 Predicted methyltransferase regulatory domain TRAM PF01938.20 gi|284172692|ref|YP_003406074.1| - 3.4e-14 52.6 3.0 5.6e-14 51.9 3.0 1.4 1 0 0 1 1 1 1 TRAM domain TrmB PF01978.19 gi|284172693|ref|YP_003406075.1| - 3.6e-21 74.8 0.1 6.8e-21 73.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|284172693|ref|YP_003406075.1| - 0.00038 19.7 0.0 0.00059 19.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB E2F_TDP PF02319.20 gi|284172693|ref|YP_003406075.1| - 0.0034 17.4 0.0 0.0071 16.4 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain MarR_2 PF12802.7 gi|284172693|ref|YP_003406075.1| - 0.014 15.2 0.1 0.034 14.0 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|284172693|ref|YP_003406075.1| - 0.017 15.2 0.4 0.21 11.7 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284172693|ref|YP_003406075.1| - 0.079 12.8 0.5 0.21 11.4 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284172694|ref|YP_003406076.1| - 5e-05 23.3 0.0 9.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172695|ref|YP_003406077.1| - 1.1e-13 50.8 1.3 2.2e-13 49.8 1.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284172695|ref|YP_003406077.1| - 1.2e-13 50.4 0.5 2e-13 49.7 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284172695|ref|YP_003406077.1| - 7e-06 25.9 0.3 1.9e-05 24.5 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|284172695|ref|YP_003406077.1| - 1.1e-05 25.4 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284172695|ref|YP_003406077.1| - 3.3e-05 23.7 0.0 6.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284172695|ref|YP_003406077.1| - 0.00033 20.3 0.4 0.00075 19.2 0.4 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|284172695|ref|YP_003406077.1| - 0.00058 20.3 0.1 0.0013 19.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284172695|ref|YP_003406077.1| - 0.00071 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|284172695|ref|YP_003406077.1| - 0.0019 17.9 0.0 0.0052 16.5 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|284172695|ref|YP_003406077.1| - 0.0022 17.8 0.0 0.0043 16.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|284172695|ref|YP_003406077.1| - 0.0041 16.9 0.0 0.0077 16.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|284172695|ref|YP_003406077.1| - 0.0091 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|284172695|ref|YP_003406077.1| - 0.015 15.3 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_CodY PF08222.11 gi|284172695|ref|YP_003406077.1| - 0.017 14.7 0.0 0.038 13.5 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain GntR PF00392.21 gi|284172695|ref|YP_003406077.1| - 0.021 14.5 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|284172695|ref|YP_003406077.1| - 0.029 14.5 0.1 0.21 11.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|284172695|ref|YP_003406077.1| - 0.045 13.6 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|284172695|ref|YP_003406077.1| - 0.05 13.9 0.0 0.29 11.5 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|284172695|ref|YP_003406077.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|284172695|ref|YP_003406077.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|284172695|ref|YP_003406077.1| - 0.13 12.7 0.0 0.36 11.2 0.0 1.7 2 0 0 2 2 2 0 FaeA-like protein HTH_45 PF14947.6 gi|284172695|ref|YP_003406077.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|284172695|ref|YP_003406077.1| - 0.17 11.6 0.1 0.39 10.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|284172695|ref|YP_003406077.1| - 0.2 11.1 0.5 0.36 10.3 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Git3 PF11710.8 gi|284172696|ref|YP_003406078.1| - 0.03 14.1 0.3 0.03 14.1 0.3 2.2 2 1 0 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 DUF5409 PF17421.2 gi|284172696|ref|YP_003406078.1| - 0.1 13.3 2.1 3.2 8.5 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5409) FTP PF07504.13 gi|284172696|ref|YP_003406078.1| - 0.13 12.1 0.4 0.25 11.2 0.4 1.4 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif IgGFc_binding PF17517.2 gi|284172697|ref|YP_003406079.1| - 0.03 13.6 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 IgGFc binding protein HTH_38 PF13936.6 gi|284172699|ref|YP_003406081.1| - 0.0051 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HHH_8 PF14716.6 gi|284172699|ref|YP_003406081.1| - 0.023 15.1 0.4 0.05 14.0 0.4 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_11 PF08279.12 gi|284172699|ref|YP_003406081.1| - 0.04 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain AIP3 PF03915.13 gi|284172699|ref|YP_003406081.1| - 0.046 12.8 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 HTH_29 PF13551.6 gi|284172699|ref|YP_003406081.1| - 0.047 13.7 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|284172699|ref|YP_003406081.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain bPH_2 PF03703.14 gi|284172701|ref|YP_003406083.1| - 3.5e-18 65.6 0.1 4.5e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|284172702|ref|YP_003406084.1| - 5.7e-42 141.8 4.2 2e-15 56.7 0.1 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|284172702|ref|YP_003406084.1| - 2.1e-06 27.7 0.0 0.0074 16.3 0.0 3.3 4 0 0 4 4 4 2 Bacterial PH domain bPH_5 PF10882.8 gi|284172702|ref|YP_003406084.1| - 0.025 14.6 0.0 3.4 7.8 0.0 3.1 3 0 0 3 3 3 0 Bacterial PH domain DUF5079 PF16882.5 gi|284172702|ref|YP_003406084.1| - 0.089 12.7 8.5 0.25 11.2 2.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5079) Peptidase_S8 PF00082.22 gi|284172707|ref|YP_003406089.1| - 3.3e-45 154.6 5.9 3.3e-45 154.6 5.9 2.5 2 1 0 2 2 2 1 Subtilase family PKD PF00801.20 gi|284172707|ref|YP_003406089.1| - 8.7e-08 31.9 3.6 8.7e-08 31.9 3.6 3.8 3 0 0 3 3 3 1 PKD domain ASH PF15780.5 gi|284172707|ref|YP_003406089.1| - 0.0032 17.6 2.8 0.0039 17.4 0.4 2.4 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin TMEM131_like PF12371.8 gi|284172707|ref|YP_003406089.1| - 0.016 15.5 0.0 0.055 13.7 0.0 2.0 1 0 0 1 1 1 0 Transmembrane protein 131-like Motile_Sperm PF00635.26 gi|284172707|ref|YP_003406089.1| - 0.018 14.9 0.1 0.05 13.4 0.1 1.8 1 0 0 1 1 1 0 MSP (Major sperm protein) domain DUF1573 PF07610.11 gi|284172707|ref|YP_003406089.1| - 0.019 15.0 0.0 0.086 12.9 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1573) DUF3332 PF11810.8 gi|284172708|ref|YP_003406090.1| - 0.17 11.5 0.1 0.22 11.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3332) Phage_integrase PF00589.22 gi|284172709|ref|YP_003406091.1| - 1e-14 54.7 0.0 2.3e-13 50.3 0.0 2.4 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|284172709|ref|YP_003406091.1| - 1.7e-05 25.2 0.0 0.0013 19.1 0.0 2.8 3 1 1 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284172709|ref|YP_003406091.1| - 0.00016 21.9 0.1 0.0007 19.8 0.0 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|284172709|ref|YP_003406091.1| - 0.0027 18.0 0.0 0.0053 17.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain HTH_10 PF04967.12 gi|284172711|ref|YP_003406093.1| - 1.4e-19 69.6 0.1 2.9e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|284172711|ref|YP_003406093.1| - 9.1e-05 21.9 0.5 0.00021 20.7 0.5 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284172711|ref|YP_003406093.1| - 0.00011 22.0 0.1 0.0002 21.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Tnp_1_2 PF13022.6 gi|284172711|ref|YP_003406093.1| - 0.0012 19.0 0.0 0.0025 18.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|284172711|ref|YP_003406093.1| - 0.01 15.5 0.1 0.43 10.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|284172711|ref|YP_003406093.1| - 0.011 15.8 0.1 0.023 14.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r3 PF04539.16 gi|284172711|ref|YP_003406093.1| - 0.015 15.4 0.2 0.078 13.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_28 PF13518.6 gi|284172711|ref|YP_003406093.1| - 0.016 15.3 0.0 0.035 14.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|284172711|ref|YP_003406093.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|284172711|ref|YP_003406093.1| - 0.026 14.5 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|284172711|ref|YP_003406093.1| - 0.027 14.5 0.2 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|284172711|ref|YP_003406093.1| - 0.033 14.1 0.1 0.077 13.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_17 PF12728.7 gi|284172711|ref|YP_003406093.1| - 0.045 14.0 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172711|ref|YP_003406093.1| - 0.056 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.19 gi|284172711|ref|YP_003406093.1| - 0.057 13.6 0.1 0.13 12.5 0.1 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_31 PF13560.6 gi|284172711|ref|YP_003406093.1| - 0.06 13.7 2.3 0.54 10.7 0.3 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172711|ref|YP_003406093.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AbiEi_4 PF13338.6 gi|284172711|ref|YP_003406093.1| - 0.065 13.4 0.1 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TetR_N PF00440.23 gi|284172711|ref|YP_003406093.1| - 0.065 13.0 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family YdaS_antitoxin PF15943.5 gi|284172711|ref|YP_003406093.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 gi|284172711|ref|YP_003406093.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Cupin_2 PF07883.11 gi|284172712|ref|YP_003406094.1| - 1.1e-08 34.6 0.3 1.8e-08 33.9 0.3 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284172712|ref|YP_003406094.1| - 0.00061 19.7 0.5 0.00093 19.1 0.5 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|284172712|ref|YP_003406094.1| - 0.038 13.9 0.0 0.067 13.1 0.0 1.5 1 1 0 1 1 1 0 ChrR Cupin-like domain adh_short PF00106.25 gi|284172713|ref|YP_003406095.1| - 1.1e-57 194.6 0.2 1.5e-57 194.2 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284172713|ref|YP_003406095.1| - 3.7e-50 170.7 0.2 4.4e-50 170.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284172713|ref|YP_003406095.1| - 2e-14 53.9 0.6 2.4e-14 53.6 0.6 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172713|ref|YP_003406095.1| - 0.00019 21.0 0.9 0.0003 20.3 0.4 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|284172713|ref|YP_003406095.1| - 0.0069 15.7 0.1 0.032 13.5 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|284172713|ref|YP_003406095.1| - 0.012 15.6 2.0 0.016 15.1 2.0 1.6 1 1 0 1 1 1 0 NAD(P)H-binding HEM4 PF02602.15 gi|284172713|ref|YP_003406095.1| - 0.032 13.6 0.2 0.069 12.5 0.1 1.5 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD DDE_Tnp_1 PF01609.21 gi|284172714|ref|YP_003406096.1| - 1.5e-14 54.2 3.2 2.2e-14 53.6 3.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|284172714|ref|YP_003406096.1| - 1.6e-06 28.4 0.2 2.9e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|284172714|ref|YP_003406096.1| - 0.0083 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|284172714|ref|YP_003406096.1| - 0.017 15.1 0.2 0.045 13.8 0.0 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) DDE_Tnp_1_5 PF13737.6 gi|284172714|ref|YP_003406096.1| - 0.03 14.6 0.0 0.068 13.5 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain sCache_2 PF17200.4 gi|284172715|ref|YP_003406097.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Single Cache domain 2 MOSC PF03473.17 gi|284172716|ref|YP_003406098.1| - 1.3e-05 25.2 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 MOSC domain DUF1451 PF07295.11 gi|284172716|ref|YP_003406098.1| - 0.029 14.4 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Cys_Met_Meta_PP PF01053.20 gi|284172717|ref|YP_003406099.1| - 2e-128 428.2 0.0 2.3e-128 428.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|284172717|ref|YP_003406099.1| - 4.3e-08 32.9 0.4 2.3e-07 30.4 0.1 2.1 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|284172717|ref|YP_003406099.1| - 0.0018 17.3 0.0 0.0042 16.1 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|284172717|ref|YP_003406099.1| - 0.0028 16.9 0.0 0.0037 16.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284172717|ref|YP_003406099.1| - 0.0039 16.5 0.0 0.012 14.9 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DUF4188 PF13826.6 gi|284172718|ref|YP_003406100.1| - 3.7e-09 36.9 0.2 4.2e-09 36.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) ABM PF03992.16 gi|284172718|ref|YP_003406100.1| - 8.9e-07 28.9 0.3 1.4e-06 28.3 0.3 1.3 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF3291 PF11695.8 gi|284172718|ref|YP_003406100.1| - 0.0011 18.6 1.4 0.0022 17.7 1.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3291) DUF3303 PF11746.8 gi|284172718|ref|YP_003406100.1| - 0.0037 17.5 0.3 0.04 14.2 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3303) SOAR PF16533.5 gi|284172720|ref|YP_003406102.1| - 0.015 15.3 0.1 0.016 15.2 0.1 1.1 1 0 0 1 1 1 0 STIM1 Orai1-activating region Sulfatase PF00884.23 gi|284172722|ref|YP_003406104.1| - 1.5e-55 188.7 0.0 2e-55 188.4 0.0 1.1 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|284172722|ref|YP_003406104.1| - 3.1e-06 27.4 0.0 0.00073 19.8 0.1 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|284172722|ref|YP_003406104.1| - 0.00012 21.8 0.0 0.0041 16.8 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|284172722|ref|YP_003406104.1| - 0.0024 17.3 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase_C PF14707.6 gi|284172722|ref|YP_003406104.1| - 0.014 16.2 0.0 0.028 15.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF229 PF02995.17 gi|284172722|ref|YP_003406104.1| - 0.038 12.6 0.0 0.13 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF229) IclR PF01614.18 gi|284172723|ref|YP_003406105.1| - 6e-33 113.4 0.1 2.2e-32 111.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172723|ref|YP_003406105.1| - 1.1e-08 34.7 0.0 2.2e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172723|ref|YP_003406105.1| - 4.6e-07 29.6 0.0 7.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284172723|ref|YP_003406105.1| - 9e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284172723|ref|YP_003406105.1| - 2.1e-05 24.5 0.0 5.6e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284172723|ref|YP_003406105.1| - 3.8e-05 23.5 0.1 0.0001 22.1 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284172723|ref|YP_003406105.1| - 0.0007 19.5 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284172723|ref|YP_003406105.1| - 0.0034 17.1 0.1 0.0072 16.1 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|284172723|ref|YP_003406105.1| - 0.0044 16.9 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|284172723|ref|YP_003406105.1| - 0.015 15.5 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|284172723|ref|YP_003406105.1| - 0.02 14.7 0.0 0.06 13.2 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284172723|ref|YP_003406105.1| - 0.028 14.3 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|284172723|ref|YP_003406105.1| - 0.033 14.0 0.7 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|284172723|ref|YP_003406105.1| - 0.039 14.1 0.0 0.074 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|284172723|ref|YP_003406105.1| - 0.047 13.5 0.0 0.097 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain TetR_N PF00440.23 gi|284172723|ref|YP_003406105.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family ABC_tran PF00005.27 gi|284172724|ref|YP_003406106.1| - 8e-35 120.3 0.0 1.4e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172724|ref|YP_003406106.1| - 1.9e-10 41.4 0.0 1.3e-09 38.7 0.0 2.5 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|284172724|ref|YP_003406106.1| - 5.3e-09 36.1 0.0 1.5e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|284172724|ref|YP_003406106.1| - 1.8e-08 34.6 0.0 0.0042 17.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172724|ref|YP_003406106.1| - 1.6e-05 24.4 0.1 4.8e-05 22.9 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|284172724|ref|YP_003406106.1| - 2.4e-05 24.5 0.0 5.4e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|284172724|ref|YP_003406106.1| - 0.00056 20.4 0.0 0.0097 16.5 0.0 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_22 PF13401.6 gi|284172724|ref|YP_003406106.1| - 0.0013 19.1 1.3 0.012 15.9 1.3 2.2 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|284172724|ref|YP_003406106.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|284172724|ref|YP_003406106.1| - 0.0016 18.9 0.0 0.0028 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284172724|ref|YP_003406106.1| - 0.0018 18.2 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|284172724|ref|YP_003406106.1| - 0.0052 17.3 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|284172724|ref|YP_003406106.1| - 0.0059 16.4 0.0 0.19 11.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain G-alpha PF00503.20 gi|284172724|ref|YP_003406106.1| - 0.0077 15.4 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA_29 PF13555.6 gi|284172724|ref|YP_003406106.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|284172724|ref|YP_003406106.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|284172724|ref|YP_003406106.1| - 0.063 12.9 0.0 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|284172724|ref|YP_003406106.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|284172724|ref|YP_003406106.1| - 0.14 11.9 1.2 1.9 8.2 1.3 2.2 1 1 0 1 1 1 0 Cytidylate kinase AAA_28 PF13521.6 gi|284172724|ref|YP_003406106.1| - 0.15 12.3 0.0 0.37 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Glyco_hydro_4C PF11975.8 gi|284172725|ref|YP_003406107.1| - 1e-64 218.4 0.0 1.6e-64 217.9 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 gi|284172725|ref|YP_003406107.1| - 1.8e-60 203.6 0.1 2.7e-60 203.1 0.1 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Ldh_1_N PF00056.23 gi|284172725|ref|YP_003406107.1| - 0.044 13.9 0.8 7.1 6.7 0.0 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|284172725|ref|YP_003406107.1| - 0.13 12.2 0.0 1.3 9.0 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SBP_bac_1 PF01547.25 gi|284172726|ref|YP_003406108.1| - 7.2e-14 52.5 0.2 2.2e-13 50.9 0.1 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284172726|ref|YP_003406108.1| - 0.00056 19.6 0.3 0.00092 19.0 0.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence P22_Tail-4 PF11650.8 gi|284172726|ref|YP_003406108.1| - 0.11 12.5 0.7 2 8.3 0.1 2.2 2 0 0 2 2 2 0 P22 tail accessory factor BPD_transp_1 PF00528.22 gi|284172727|ref|YP_003406109.1| - 5.2e-20 72.0 18.6 5.2e-20 72.0 18.6 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4748 PF15932.5 gi|284172727|ref|YP_003406109.1| - 0.3 10.8 2.9 0.23 11.2 1.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4748) BPD_transp_1 PF00528.22 gi|284172728|ref|YP_003406110.1| - 3.1e-21 76.0 13.1 3.1e-21 76.0 13.1 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component MR_MLE_C PF13378.6 gi|284172729|ref|YP_003406111.1| - 1.5e-64 217.6 0.2 2.1e-64 217.1 0.2 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172729|ref|YP_003406111.1| - 6.5e-25 87.6 0.0 1.2e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 gi|284172730|ref|YP_003406112.1| - 2.1e-65 220.6 0.3 2.6e-65 220.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172730|ref|YP_003406112.1| - 6.3e-49 166.1 0.0 7.5e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172730|ref|YP_003406112.1| - 2.8e-10 40.4 0.1 3.9e-10 39.9 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172730|ref|YP_003406112.1| - 0.0012 18.4 0.1 0.0015 18.0 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|284172730|ref|YP_003406112.1| - 0.16 11.9 0.4 0.24 11.3 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_hydro_32N PF00251.20 gi|284172731|ref|YP_003406113.1| - 5.2e-72 243.0 3.3 6.5e-72 242.7 3.3 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|284172731|ref|YP_003406113.1| - 8.8e-30 103.8 0.1 2e-29 102.6 0.1 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 C terminal MOSC PF03473.17 gi|284172731|ref|YP_003406113.1| - 0.028 14.4 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 MOSC domain GlcNAc_2-epim PF07221.11 gi|284172733|ref|YP_003406115.1| - 8.4e-51 173.2 6.4 3.4e-48 164.7 6.4 2.0 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|284172733|ref|YP_003406115.1| - 2.5e-07 30.6 1.4 0.0032 17.1 0.1 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 LANC_like PF05147.13 gi|284172733|ref|YP_003406115.1| - 3.8e-05 22.5 0.1 0.089 11.3 0.0 2.9 4 0 0 4 4 4 2 Lanthionine synthetase C-like protein Glyco_hydro_88 PF07470.13 gi|284172733|ref|YP_003406115.1| - 0.00023 20.3 3.8 0.076 12.1 0.2 2.7 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 gi|284172733|ref|YP_003406115.1| - 0.009 14.5 0.1 0.84 8.1 0.0 2.2 2 0 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 C5-epim_C PF06662.13 gi|284172733|ref|YP_003406115.1| - 0.055 13.0 0.1 2.4 7.6 0.0 2.5 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus GFO_IDH_MocA PF01408.22 gi|284172734|ref|YP_003406116.1| - 3e-18 66.8 0.0 7.9e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold CaATP_NAI PF12515.8 gi|284172734|ref|YP_003406116.1| - 0.19 11.4 2.0 0.23 11.1 0.5 1.9 2 0 0 2 2 2 0 Ca2+-ATPase N terminal autoinhibitory domain AP_endonuc_2 PF01261.24 gi|284172735|ref|YP_003406117.1| - 4.3e-20 72.0 2.4 4.3e-20 72.0 2.4 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1129 PF06570.11 gi|284172736|ref|YP_003406118.1| - 0.046 13.2 1.3 0.049 13.1 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2976 PF11190.8 gi|284172736|ref|YP_003406118.1| - 0.13 12.0 2.1 0.16 11.8 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF2207 PF09972.9 gi|284172736|ref|YP_003406118.1| - 0.64 8.7 1.8 0.71 8.6 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 gi|284172737|ref|YP_003406119.1| - 2.3e-28 99.4 0.0 3.1e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172737|ref|YP_003406119.1| - 3.9e-15 56.1 0.1 6.8e-15 55.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|284172737|ref|YP_003406119.1| - 0.00044 20.5 2.4 0.013 15.7 2.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|284172737|ref|YP_003406119.1| - 0.00073 19.4 0.3 1.1 9.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284172737|ref|YP_003406119.1| - 0.042 13.6 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|284172737|ref|YP_003406119.1| - 0.065 12.4 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 gi|284172737|ref|YP_003406119.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATPase PF06745.13 gi|284172737|ref|YP_003406119.1| - 0.22 10.9 0.0 0.68 9.2 0.1 1.7 2 0 0 2 2 2 0 KaiC PhoH PF02562.16 gi|284172737|ref|YP_003406119.1| - 0.24 10.8 0.1 0.4 10.1 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|284172738|ref|YP_003406120.1| - 4.4e-22 79.1 0.0 6.2e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172738|ref|YP_003406120.1| - 1.8e-20 73.2 0.3 3.9e-20 72.1 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172738|ref|YP_003406120.1| - 1.2e-06 28.6 1.3 1.2e-06 28.6 1.3 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284172738|ref|YP_003406120.1| - 0.00023 21.4 1.1 0.013 15.7 1.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284172738|ref|YP_003406120.1| - 0.00054 19.5 0.1 0.3 10.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284172738|ref|YP_003406120.1| - 0.011 16.1 0.8 0.024 15.0 0.8 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|284172738|ref|YP_003406120.1| - 0.014 15.0 0.0 0.033 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284172738|ref|YP_003406120.1| - 0.015 15.1 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|284172738|ref|YP_003406120.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|284172738|ref|YP_003406120.1| - 0.072 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain ABC_ATPase PF09818.9 gi|284172738|ref|YP_003406120.1| - 0.085 11.6 0.1 0.3 9.8 0.1 1.8 1 1 0 1 1 1 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|284172738|ref|YP_003406120.1| - 0.091 12.5 0.1 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|284172738|ref|YP_003406120.1| - 0.17 11.9 0.2 0.63 10.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 gi|284172739|ref|YP_003406121.1| - 1.4e-26 93.4 13.2 1.4e-26 93.4 13.2 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284172740|ref|YP_003406122.1| - 8.9e-36 123.4 11.4 8.9e-36 123.4 11.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|284172740|ref|YP_003406122.1| - 0.18 12.4 0.3 0.18 12.4 0.3 2.8 3 0 0 3 3 3 0 Renin receptor-like protein Claudin_2 PF13903.6 gi|284172740|ref|YP_003406122.1| - 0.78 9.5 5.2 0.11 12.3 0.5 1.9 2 1 1 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction SBP_bac_5 PF00496.22 gi|284172741|ref|YP_003406123.1| - 2.6e-43 148.4 1.5 3.4e-43 148.0 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172741|ref|YP_003406123.1| - 0.00039 20.1 3.5 0.00063 19.5 3.5 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.22 gi|284172742|ref|YP_003406124.1| - 6.5e-20 72.1 0.0 1.3e-19 71.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172742|ref|YP_003406124.1| - 5.2e-06 26.5 0.2 1e-05 25.5 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|284172742|ref|YP_003406124.1| - 1.2e-05 24.8 0.0 2.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284172742|ref|YP_003406124.1| - 1.5e-05 25.2 0.0 0.00011 22.4 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|284172742|ref|YP_003406124.1| - 0.0009 19.5 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|284172742|ref|YP_003406124.1| - 0.0057 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|284172742|ref|YP_003406124.1| - 0.0065 16.0 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family CoA_binding PF02629.19 gi|284172742|ref|YP_003406124.1| - 0.0099 16.5 0.0 0.027 15.1 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain G6PD_N PF00479.22 gi|284172742|ref|YP_003406124.1| - 0.021 15.5 0.0 0.041 14.5 0.0 1.5 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284172742|ref|YP_003406124.1| - 0.094 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain IclR PF01614.18 gi|284172743|ref|YP_003406125.1| - 7.2e-35 119.6 0.1 1.5e-34 118.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172743|ref|YP_003406125.1| - 1.3e-09 37.7 0.0 2.3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284172743|ref|YP_003406125.1| - 2.1e-05 24.5 0.0 4.6e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172743|ref|YP_003406125.1| - 0.0003 20.6 0.1 0.00053 19.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284172743|ref|YP_003406125.1| - 0.00079 18.9 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284172743|ref|YP_003406125.1| - 0.00081 19.2 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|284172743|ref|YP_003406125.1| - 0.0043 16.8 1.3 0.0087 15.8 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172743|ref|YP_003406125.1| - 0.0057 16.6 0.0 0.015 15.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|284172743|ref|YP_003406125.1| - 0.0077 16.4 0.1 0.017 15.3 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|284172743|ref|YP_003406125.1| - 0.0087 15.9 0.1 0.12 12.2 0.0 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|284172743|ref|YP_003406125.1| - 0.012 16.1 0.2 0.022 15.2 0.2 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|284172743|ref|YP_003406125.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family SpoIIID PF12116.8 gi|284172743|ref|YP_003406125.1| - 0.026 14.6 0.3 0.053 13.6 0.3 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D DinB_2 PF12867.7 gi|284172743|ref|YP_003406125.1| - 0.027 15.0 0.0 2.3 8.8 0.0 2.3 2 0 0 2 2 2 0 DinB superfamily HTH_40 PF14493.6 gi|284172743|ref|YP_003406125.1| - 0.033 14.6 0.1 0.081 13.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|284172743|ref|YP_003406125.1| - 0.036 13.6 0.1 0.064 12.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.20 gi|284172743|ref|YP_003406125.1| - 0.055 13.8 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator Usp PF00582.26 gi|284172744|ref|YP_003406126.1| - 4.9e-09 36.8 0.2 6.6e-09 36.4 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family HutP PF09021.11 gi|284172744|ref|YP_003406126.1| - 0.0066 16.8 0.1 0.0085 16.4 0.1 1.2 1 0 0 1 1 1 1 HutP Ig_mannosidase PF17753.1 gi|284172745|ref|YP_003406127.1| - 4e-14 52.1 0.0 1.9e-13 49.9 0.0 2.2 1 0 0 1 1 1 1 Ig-fold domain Mannosidase_ig PF17786.1 gi|284172745|ref|YP_003406127.1| - 6.7e-12 45.9 0.0 3.3e-11 43.6 0.0 2.3 2 0 0 2 2 2 1 Mannosidase Ig/CBM-like domain Glyco_hydro_2_N PF02837.18 gi|284172745|ref|YP_003406127.1| - 6.4e-08 32.7 0.0 4e-07 30.1 0.0 2.3 2 1 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|284172745|ref|YP_003406127.1| - 2.6e-06 28.1 2.9 3e-06 27.9 0.3 2.3 3 0 0 3 3 3 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.17 gi|284172745|ref|YP_003406127.1| - 0.012 14.7 0.0 0.069 12.2 0.0 2.1 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain Ig_GlcNase PF18368.1 gi|284172745|ref|YP_003406127.1| - 0.027 14.6 0.0 0.11 12.6 0.0 2.1 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain Cadherin-like PF12733.7 gi|284172745|ref|YP_003406127.1| - 0.18 12.3 4.9 3.6 8.2 0.0 3.8 4 0 0 4 4 4 0 Cadherin-like beta sandwich domain UxuA PF03786.13 gi|284172746|ref|YP_003406128.1| - 9.3e-77 258.2 0.0 6.2e-59 199.6 0.0 2.0 1 1 0 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|284172746|ref|YP_003406128.1| - 5.1e-14 52.2 0.0 8.3e-14 51.5 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Cellulase PF00150.18 gi|284172747|ref|YP_003406129.1| - 5.6e-18 65.4 0.4 8.2e-18 64.8 0.4 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.8 gi|284172747|ref|YP_003406129.1| - 0.00025 20.7 0.0 0.0019 17.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core Glyco_hydro_42 PF02449.15 gi|284172747|ref|YP_003406129.1| - 0.0012 18.2 0.1 0.0024 17.3 0.1 1.4 1 1 0 1 1 1 1 Beta-galactosidase Glyco_hydro_2_C PF02836.17 gi|284172747|ref|YP_003406129.1| - 0.018 14.2 0.0 0.042 13.0 0.0 1.4 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain AP_endonuc_2 PF01261.24 gi|284172747|ref|YP_003406129.1| - 0.039 13.4 0.2 0.14 11.6 0.1 1.9 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel CBM_35 PF16990.5 gi|284172748|ref|YP_003406130.1| - 1.4e-22 80.2 1.1 2.8e-22 79.2 1.1 1.5 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) Cellulase PF00150.18 gi|284172748|ref|YP_003406130.1| - 3.3e-14 53.0 3.9 7.3e-14 51.9 3.5 1.7 2 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) DUF5010_C PF18099.1 gi|284172748|ref|YP_003406130.1| - 1.4e-06 28.4 0.1 3.8e-06 27.0 0.1 1.7 1 0 0 1 1 1 1 DUF5010 C-terminal domain Endotoxin_C PF03944.14 gi|284172748|ref|YP_003406130.1| - 0.0016 18.8 2.0 0.0022 18.4 1.2 1.6 2 0 0 2 2 2 1 delta endotoxin Melibiase_2 PF16499.5 gi|284172749|ref|YP_003406131.1| - 4.7e-84 281.9 2.7 6.9e-84 281.4 2.7 1.3 1 0 0 1 1 1 1 Alpha galactosidase A Melibiase_C PF17801.1 gi|284172749|ref|YP_003406131.1| - 2.1e-17 62.9 0.3 5.6e-17 61.6 0.3 1.7 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain Melibiase PF02065.18 gi|284172749|ref|YP_003406131.1| - 6e-10 38.6 0.0 1.7e-09 37.1 0.0 1.7 2 0 0 2 2 2 1 Melibiase NPCBM_assoc PF10633.9 gi|284172749|ref|YP_003406131.1| - 8.8e-10 38.7 2.2 4e-09 36.6 0.3 2.9 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Raffinose_syn PF05691.12 gi|284172749|ref|YP_003406131.1| - 0.00099 17.0 0.1 0.0015 16.5 0.1 1.1 1 0 0 1 1 1 1 Raffinose synthase or seed imbibition protein Sip1 DUF11 PF01345.18 gi|284172749|ref|YP_003406131.1| - 0.021 15.1 3.2 0.087 13.1 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function DUF11 EamA PF00892.20 gi|284172750|ref|YP_003406132.1| - 6e-38 130.1 46.2 5.4e-22 78.4 22.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|284172750|ref|YP_003406132.1| - 0.013 15.0 12.0 0.017 14.7 12.0 1.2 1 0 0 1 1 1 0 Solute carrier family 35 TMEM234 PF10639.9 gi|284172750|ref|YP_003406132.1| - 0.019 15.0 2.5 0.019 15.0 2.5 2.1 2 0 0 2 2 2 0 Putative transmembrane family 234 Nitroreductase PF00881.24 gi|284172750|ref|YP_003406132.1| - 0.24 11.4 0.8 11 6.0 0.1 2.4 1 1 1 2 2 2 0 Nitroreductase family TPT PF03151.16 gi|284172750|ref|YP_003406132.1| - 1 8.6 13.0 2.9 7.2 12.9 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family Usp PF00582.26 gi|284172751|ref|YP_003406133.1| - 1e-21 77.9 1.8 1.2e-21 77.7 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_88 PF07470.13 gi|284172754|ref|YP_003406136.1| - 1.4e-54 185.5 0.0 2.1e-54 184.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 SQHop_cyclase_C PF13243.6 gi|284172754|ref|YP_003406136.1| - 0.0076 15.4 0.1 2.5 7.1 0.0 2.1 1 1 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain C5-epim_C PF06662.13 gi|284172754|ref|YP_003406136.1| - 0.068 12.7 0.0 0.34 10.4 0.0 2.0 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Shikimate_dh_N PF08501.11 gi|284172755|ref|YP_003406137.1| - 7.4e-26 90.2 0.0 1.7e-25 89.1 0.0 1.6 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|284172755|ref|YP_003406137.1| - 2e-10 40.2 0.4 5.5e-10 38.8 0.4 1.8 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|284172755|ref|YP_003406137.1| - 2.9e-10 40.3 0.0 4.5e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284172755|ref|YP_003406137.1| - 0.0013 18.1 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284172755|ref|YP_003406137.1| - 0.002 17.7 0.1 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|284172755|ref|YP_003406137.1| - 0.0038 17.8 0.3 0.0077 16.8 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|284172755|ref|YP_003406137.1| - 0.014 15.9 0.0 0.021 15.3 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 gi|284172755|ref|YP_003406137.1| - 0.1 12.0 0.4 0.17 11.3 0.4 1.3 1 0 0 1 1 1 0 short chain dehydrogenase THF_DHG_CYH_C PF02882.19 gi|284172755|ref|YP_003406137.1| - 0.16 11.3 0.0 0.34 10.2 0.0 1.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_3 PF13738.6 gi|284172755|ref|YP_003406137.1| - 0.17 11.1 0.1 0.22 10.7 0.1 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TubC_N PF18563.1 gi|284172756|ref|YP_003406138.1| - 0.12 12.4 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 TubC N-terminal docking domain FAA_hydrolase PF01557.18 gi|284172757|ref|YP_003406139.1| - 9.2e-48 162.8 0.0 1.1e-47 162.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactate_perm PF02652.14 gi|284172758|ref|YP_003406140.1| - 2.8e-98 330.0 38.9 5.4e-97 325.7 38.9 2.3 1 1 0 1 1 1 1 L-lactate permease RIC3 PF15361.6 gi|284172758|ref|YP_003406140.1| - 0.53 10.7 3.0 0.49 10.8 0.1 2.0 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 LUD_dom PF02589.15 gi|284172759|ref|YP_003406141.1| - 1.1e-11 44.8 0.0 2.7e-11 43.5 0.0 1.6 2 0 0 2 2 2 1 LUD domain LUD_dom PF02589.15 gi|284172760|ref|YP_003406142.1| - 2e-43 148.3 0.1 3.7e-43 147.5 0.1 1.5 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|284172760|ref|YP_003406142.1| - 6.4e-08 32.9 4.3 1.4e-07 31.8 4.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284172760|ref|YP_003406142.1| - 3.3e-07 30.3 2.9 0.0015 18.6 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284172760|ref|YP_003406142.1| - 4.4e-07 29.9 0.5 1.3e-06 28.5 0.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284172760|ref|YP_003406142.1| - 1.7e-06 28.4 3.3 3.2e-06 27.6 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284172760|ref|YP_003406142.1| - 2.3e-05 24.9 5.3 5.7e-05 23.6 5.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284172760|ref|YP_003406142.1| - 0.00041 20.4 8.2 0.0023 18.1 8.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284172760|ref|YP_003406142.1| - 0.0012 18.5 13.1 0.0037 17.0 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|284172760|ref|YP_003406142.1| - 0.024 14.4 3.1 0.033 14.0 0.1 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|284172760|ref|YP_003406142.1| - 0.037 14.1 14.4 0.14 12.3 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|284172760|ref|YP_003406142.1| - 0.06 14.2 7.5 0.066 14.1 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284172760|ref|YP_003406142.1| - 0.08 13.9 9.0 0.19 12.7 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|284172760|ref|YP_003406142.1| - 0.085 13.4 13.2 0.25 12.0 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284172760|ref|YP_003406142.1| - 0.2 11.8 11.6 0.15 12.2 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|284172760|ref|YP_003406142.1| - 0.21 12.6 17.5 0.071 14.1 5.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284172760|ref|YP_003406142.1| - 0.43 10.8 10.6 0.15 12.3 1.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|284172761|ref|YP_003406143.1| - 2.3e-61 207.6 0.0 4.5e-61 206.6 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|284172761|ref|YP_003406143.1| - 3.9e-38 130.3 0.3 7.5e-38 129.4 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|284172761|ref|YP_003406143.1| - 3.5e-10 40.3 5.8 6.5e-10 39.4 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284172761|ref|YP_003406143.1| - 3.9e-10 40.0 5.8 8.7e-10 38.9 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|284172761|ref|YP_003406143.1| - 1.6e-06 28.3 0.6 0.031 14.5 0.0 3.1 4 0 0 4 4 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|284172761|ref|YP_003406143.1| - 2.3e-05 24.4 2.9 0.027 14.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284172761|ref|YP_003406143.1| - 0.0036 17.9 6.2 0.0081 16.7 6.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284172761|ref|YP_003406143.1| - 0.005 17.0 6.4 0.022 14.9 6.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284172761|ref|YP_003406143.1| - 0.014 15.5 10.2 0.25 11.5 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|284172761|ref|YP_003406143.1| - 0.037 13.8 13.1 0.25 11.2 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284172761|ref|YP_003406143.1| - 0.057 13.6 0.1 0.057 13.6 0.1 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284172761|ref|YP_003406143.1| - 0.11 13.0 12.9 0.2 12.2 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284172761|ref|YP_003406143.1| - 0.33 11.2 2.7 0.31 11.2 0.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284172761|ref|YP_003406143.1| - 1.5 9.8 6.6 4.9 8.2 6.7 1.9 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|284172761|ref|YP_003406143.1| - 2.9 8.1 13.0 1.3 9.3 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Glyoxalase PF00903.25 gi|284172762|ref|YP_003406144.1| - 8.1e-12 45.5 0.8 1.2e-11 44.9 0.8 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284172762|ref|YP_003406144.1| - 9.8e-10 38.7 0.4 2.2e-08 34.3 0.4 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284172762|ref|YP_003406144.1| - 0.00011 22.9 0.4 0.00015 22.5 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|284172762|ref|YP_003406144.1| - 0.00031 20.7 0.0 0.00073 19.4 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284172762|ref|YP_003406144.1| - 0.00055 20.1 0.1 0.005 17.0 0.1 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Histidinol_dh PF00815.20 gi|284172762|ref|YP_003406144.1| - 0.11 11.4 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Histidinol dehydrogenase IclR PF01614.18 gi|284172763|ref|YP_003406145.1| - 2.3e-33 114.8 0.0 5.5e-33 113.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172763|ref|YP_003406145.1| - 6.2e-10 38.7 0.1 2.9e-09 36.6 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172763|ref|YP_003406145.1| - 1.8e-06 27.7 0.1 3.6e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284172763|ref|YP_003406145.1| - 2.4e-05 24.1 0.0 0.0001 22.1 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284172763|ref|YP_003406145.1| - 0.00022 21.0 0.2 0.00062 19.6 0.2 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|284172763|ref|YP_003406145.1| - 0.00058 20.0 0.1 0.0012 19.0 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|284172763|ref|YP_003406145.1| - 0.00099 19.0 0.0 0.0034 17.3 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|284172763|ref|YP_003406145.1| - 0.0038 17.7 0.1 0.0077 16.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|284172763|ref|YP_003406145.1| - 0.0039 17.3 0.0 0.0082 16.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|284172763|ref|YP_003406145.1| - 0.0084 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2203 PF09969.9 gi|284172763|ref|YP_003406145.1| - 0.032 14.9 0.2 4.3 8.1 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) LexA_DNA_bind PF01726.16 gi|284172763|ref|YP_003406145.1| - 0.037 13.8 0.0 0.097 12.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain B-block_TFIIIC PF04182.12 gi|284172763|ref|YP_003406145.1| - 0.041 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC SpoVT_C PF15714.5 gi|284172763|ref|YP_003406145.1| - 0.08 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor HpcH_HpaI PF03328.14 gi|284172764|ref|YP_003406146.1| - 2.4e-08 33.4 0.0 5.9e-08 32.1 0.0 1.6 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Ring_hydroxyl_A PF00848.19 gi|284172767|ref|YP_003406149.1| - 2.2e-17 63.7 11.7 7.3e-16 58.8 11.7 2.2 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|284172767|ref|YP_003406149.1| - 3.1e-17 62.3 0.0 7e-17 61.1 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|284172767|ref|YP_003406149.1| - 0.0052 16.7 0.0 0.018 14.9 0.0 1.9 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain Chorismate_bind PF00425.18 gi|284172770|ref|YP_003406152.1| - 1.5e-100 336.0 0.0 4.1e-100 334.6 0.0 1.7 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|284172770|ref|YP_003406152.1| - 2.8e-09 37.3 0.0 8.7e-09 35.7 0.0 1.8 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|284172771|ref|YP_003406153.1| - 3e-42 144.5 0.1 3.2e-41 141.2 0.1 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284172771|ref|YP_003406153.1| - 2.5e-07 30.7 0.3 1.2e-06 28.4 0.3 1.9 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.18 gi|284172771|ref|YP_003406153.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein AstE_AspA PF04952.14 gi|284172772|ref|YP_003406154.1| - 5.1e-38 130.8 0.0 6e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family ATP-synt_ab_Xtn PF16886.5 gi|284172772|ref|YP_003406154.1| - 0.014 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension Creatininase PF02633.14 gi|284172773|ref|YP_003406155.1| - 4.6e-74 248.9 4.0 5.2e-74 248.7 4.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase T7SS_ESX_EspC PF10824.8 gi|284172773|ref|YP_003406155.1| - 0.051 14.0 0.5 0.43 11.1 0.1 2.4 2 0 0 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm DUF5132 PF17195.4 gi|284172773|ref|YP_003406155.1| - 3.3 7.9 6.7 5.9 7.1 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF5132) THF_DHG_CYH_C PF02882.19 gi|284172774|ref|YP_003406156.1| - 2e-66 222.2 1.9 2.6e-66 221.9 1.9 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|284172774|ref|YP_003406156.1| - 2.1e-36 124.7 0.0 3.2e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GCV_T PF01571.21 gi|284172775|ref|YP_003406157.1| - 3.7e-79 265.7 0.0 6.4e-79 264.9 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|284172775|ref|YP_003406157.1| - 6.3e-41 141.1 1.4 2.3e-40 139.3 0.7 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|284172775|ref|YP_003406157.1| - 3.4e-19 68.5 0.2 1e-18 67.0 0.2 1.9 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|284172775|ref|YP_003406157.1| - 3.2e-12 46.6 0.1 8e-12 45.3 0.1 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain NAD_binding_8 PF13450.6 gi|284172775|ref|YP_003406157.1| - 1.2e-05 25.5 0.1 3.9e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284172775|ref|YP_003406157.1| - 5e-05 22.7 0.0 0.0034 16.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172775|ref|YP_003406157.1| - 0.00014 21.2 0.1 0.0041 16.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284172775|ref|YP_003406157.1| - 0.00057 19.1 0.3 0.0016 17.6 0.3 1.7 1 1 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|284172775|ref|YP_003406157.1| - 0.00065 19.4 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|284172775|ref|YP_003406157.1| - 0.0011 18.3 0.1 0.0025 17.2 0.1 1.4 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.6 gi|284172775|ref|YP_003406157.1| - 0.0015 18.6 0.2 1.6 8.7 0.0 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding SoxG PF04268.12 gi|284172775|ref|YP_003406157.1| - 0.0016 18.6 0.0 0.014 15.6 0.0 2.1 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family Pyr_redox PF00070.27 gi|284172775|ref|YP_003406157.1| - 0.0021 18.6 0.2 0.0067 17.0 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|284172775|ref|YP_003406157.1| - 0.0097 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Shikimate_DH PF01488.20 gi|284172775|ref|YP_003406157.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|284172775|ref|YP_003406157.1| - 0.033 14.4 0.1 0.068 13.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|284172775|ref|YP_003406157.1| - 0.047 12.7 0.3 0.085 11.9 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|284172775|ref|YP_003406157.1| - 0.17 11.2 0.1 0.33 10.2 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|284172775|ref|YP_003406157.1| - 0.27 9.9 0.5 12 4.4 0.3 2.2 2 0 0 2 2 2 0 HI0933-like protein PALP PF00291.25 gi|284172776|ref|YP_003406158.1| - 3.4e-86 289.3 7.3 4.9e-86 288.8 7.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|284172776|ref|YP_003406158.1| - 2.3e-05 24.1 0.4 9.1e-05 22.2 0.4 2.1 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|284172776|ref|YP_003406158.1| - 0.00069 20.2 1.8 0.00071 20.1 0.1 2.0 2 0 0 2 2 2 1 ACT domain BCCT PF02028.17 gi|284172777|ref|YP_003406159.1| - 2.6e-156 520.9 53.3 3e-156 520.7 53.3 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Ribonuc_L-PSP PF01042.21 gi|284172778|ref|YP_003406160.1| - 9.5e-41 138.6 0.0 1.1e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|284172778|ref|YP_003406160.1| - 0.0075 16.4 0.0 0.0098 16.0 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Formyl_trans_N PF00551.19 gi|284172779|ref|YP_003406161.1| - 1.4e-42 145.5 0.0 5.6e-42 143.5 0.0 1.8 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.6 gi|284172779|ref|YP_003406161.1| - 4.5e-11 42.6 0.3 1.1e-10 41.3 0.3 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|284172779|ref|YP_003406161.1| - 0.0041 17.7 0.3 0.0089 16.6 0.3 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|284172779|ref|YP_003406161.1| - 0.033 14.0 0.6 0.087 12.6 0.3 1.9 2 0 0 2 2 2 0 ACT domain tRNA_SAD PF07973.14 gi|284172780|ref|YP_003406162.1| - 4.1e-13 49.2 0.1 8e-13 48.3 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|284172780|ref|YP_003406162.1| - 3.2e-10 39.1 0.1 5e-10 38.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|284172780|ref|YP_003406162.1| - 5.8e-09 36.5 0.1 1.1e-08 35.5 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain YabA PF06156.13 gi|284172780|ref|YP_003406162.1| - 0.0026 18.4 0.1 0.0048 17.5 0.1 1.3 1 0 0 1 1 1 1 Initiation control protein YabA bZIP_1 PF00170.21 gi|284172780|ref|YP_003406162.1| - 0.4 10.8 1.0 0.8 9.9 1.0 1.4 1 0 0 1 1 1 0 bZIP transcription factor Pterin_bind PF00809.22 gi|284172781|ref|YP_003406163.1| - 4.1e-83 278.8 0.2 7.2e-83 278.0 0.2 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|284172781|ref|YP_003406163.1| - 1.5e-13 51.2 0.0 2.7e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|284172781|ref|YP_003406163.1| - 4e-09 36.6 0.0 1.8e-08 34.5 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.6 gi|284172781|ref|YP_003406163.1| - 0.24 10.8 8.6 4.5 6.6 0.0 4.3 3 2 1 5 5 5 0 Phosphoenolpyruvate phosphomutase AAA_23 PF13476.6 gi|284172782|ref|YP_003406164.1| - 6e-15 56.3 6.1 6e-15 56.3 6.1 3.6 1 1 2 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|284172782|ref|YP_003406164.1| - 1.9e-07 31.1 0.2 1.7e-06 28.0 0.2 2.7 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.8 gi|284172782|ref|YP_003406164.1| - 0.00015 19.5 56.3 0.0077 13.8 26.4 2.6 3 0 0 3 3 3 2 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.9 gi|284172782|ref|YP_003406164.1| - 0.00045 20.2 24.5 0.00045 20.2 24.5 4.5 1 1 2 3 3 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|284172782|ref|YP_003406164.1| - 0.00064 18.7 62.7 0.055 12.3 14.3 3.7 1 1 1 3 3 3 2 Spc7 kinetochore protein Cep57_CLD_2 PF14197.6 gi|284172782|ref|YP_003406164.1| - 0.0012 18.9 9.8 0.0012 18.9 9.8 5.4 3 2 1 4 4 3 1 Centrosome localisation domain of PPC89 DUF4201 PF13870.6 gi|284172782|ref|YP_003406164.1| - 0.004 16.9 9.1 0.004 16.9 9.1 4.4 3 2 2 5 5 4 2 Domain of unknown function (DUF4201) DivIC PF04977.15 gi|284172782|ref|YP_003406164.1| - 0.021 14.6 65.2 0.03 14.1 6.2 8.2 4 3 4 8 8 8 0 Septum formation initiator AAA_29 PF13555.6 gi|284172782|ref|YP_003406164.1| - 0.027 14.2 0.1 0.051 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3450 PF11932.8 gi|284172782|ref|YP_003406164.1| - 0.11 11.7 55.5 0.025 13.9 10.4 4.6 2 2 1 4 4 4 0 Protein of unknown function (DUF3450) Atg14 PF10186.9 gi|284172782|ref|YP_003406164.1| - 0.18 10.9 46.2 0.095 11.8 13.1 3.3 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 BLOC1_2 PF10046.9 gi|284172782|ref|YP_003406164.1| - 0.35 11.2 33.0 0.14 12.5 5.7 5.3 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LPP PF04728.13 gi|284172782|ref|YP_003406164.1| - 0.4 11.1 7.2 55 4.3 0.0 4.8 5 0 0 5 5 4 0 Lipoprotein leucine-zipper Fez1 PF06818.15 gi|284172782|ref|YP_003406164.1| - 2.1 8.7 61.9 0.32 11.4 12.7 3.5 1 1 0 2 2 2 0 Fez1 Sas6_CC PF18594.1 gi|284172782|ref|YP_003406164.1| - 2.3 8.1 7.5 5.5 6.9 0.2 3.6 3 0 0 3 3 3 0 Sas6/XLF/XRCC4 coiled-coil domain FPP PF05911.11 gi|284172782|ref|YP_003406164.1| - 2.8 6.0 50.3 0.21 9.7 30.3 2.3 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil DUF5082 PF16888.5 gi|284172782|ref|YP_003406164.1| - 3.9 7.8 43.1 0.29 11.4 12.4 5.8 2 2 1 4 4 4 0 Domain of unknown function (DUF5082) Golgin_A5 PF09787.9 gi|284172782|ref|YP_003406164.1| - 4.8 6.5 67.0 0.5 9.8 24.7 3.3 1 1 2 3 3 3 0 Golgin subfamily A member 5 GIT_CC PF16559.5 gi|284172782|ref|YP_003406164.1| - 5 7.1 11.4 23 5.0 0.1 4.6 4 1 1 5 5 5 0 GIT coiled-coil Rho guanine nucleotide exchange factor Baculo_PEP_C PF04513.12 gi|284172782|ref|YP_003406164.1| - 5.5 7.0 18.3 2.5 8.1 1.5 4.7 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|284172782|ref|YP_003406164.1| - 5.7 7.5 23.4 3.9 8.0 1.0 5.9 3 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|284172782|ref|YP_003406164.1| - 7.6 5.0 43.2 0.11 11.2 5.8 3.0 1 1 3 4 4 4 0 AAA domain GAS PF13851.6 gi|284172782|ref|YP_003406164.1| - 9 5.6 59.5 0.24 10.7 9.2 4.2 2 2 2 4 4 3 0 Growth-arrest specific micro-tubule binding Zn_ribbon_SprT PF17283.2 gi|284172783|ref|YP_003406165.1| - 0.0068 16.3 2.4 0.024 14.5 2.4 2.0 1 0 0 1 1 1 1 SprT-like zinc ribbon domain HTH_10 PF04967.12 gi|284172784|ref|YP_003406166.1| - 7.7e-16 57.6 0.0 1.2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284172784|ref|YP_003406166.1| - 0.0014 18.5 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HalOD1 PF18545.1 gi|284172785|ref|YP_003406167.1| - 1.9e-20 72.9 0.0 2.6e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 AFOR_C PF01314.18 gi|284172786|ref|YP_003406168.1| - 1.7e-117 392.7 4.8 2.1e-117 392.4 4.8 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284172786|ref|YP_003406168.1| - 5.9e-72 241.7 0.1 8.6e-72 241.2 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PPDK_N PF01326.19 gi|284172788|ref|YP_003406170.1| - 4.5e-107 358.1 0.2 6.8e-107 357.5 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|284172788|ref|YP_003406170.1| - 2.2e-84 283.1 0.0 3.2e-84 282.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|284172788|ref|YP_003406170.1| - 4.8e-28 96.7 2.8 1.4e-27 95.2 2.8 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RdRP PF05183.12 gi|284172788|ref|YP_003406170.1| - 0.0066 15.1 0.0 0.18 10.4 0.0 2.1 2 0 0 2 2 2 1 RNA dependent RNA polymerase HpcH_HpaI PF03328.14 gi|284172788|ref|YP_003406170.1| - 0.011 14.9 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family PEPcase PF00311.17 gi|284172789|ref|YP_003406171.1| - 6.6e-242 805.0 0.0 9.6e-242 804.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|284172789|ref|YP_003406171.1| - 0.00019 20.1 0.0 0.00034 19.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Peptidase_M16 PF00675.20 gi|284172789|ref|YP_003406171.1| - 0.031 14.2 1.2 0.084 12.9 0.2 2.3 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) Activator-TraM PF11657.8 gi|284172789|ref|YP_003406171.1| - 0.04 13.7 0.1 0.04 13.7 0.1 2.3 3 0 0 3 3 3 0 Transcriptional activator TraM ADH_N PF08240.12 gi|284172791|ref|YP_003406173.1| - 1.7e-28 98.7 1.3 6.5e-28 96.8 1.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284172791|ref|YP_003406173.1| - 4.2e-10 39.7 0.0 8.8e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|284172791|ref|YP_003406173.1| - 3.1e-08 33.4 1.0 8.8e-08 31.9 1.0 1.9 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Glu_dehyd_C PF16912.5 gi|284172791|ref|YP_003406173.1| - 0.0052 16.3 0.2 0.053 13.0 0.0 2.4 3 0 0 3 3 3 1 Glucose dehydrogenase C-terminus HI0933_like PF03486.14 gi|284172791|ref|YP_003406173.1| - 0.016 13.9 0.1 0.052 12.3 0.1 1.7 2 0 0 2 2 2 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|284172791|ref|YP_003406173.1| - 0.024 14.0 0.1 0.042 13.1 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|284172791|ref|YP_003406173.1| - 0.18 11.0 0.1 0.28 10.4 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase zf-DBF PF07535.12 gi|284172791|ref|YP_003406173.1| - 1 9.5 2.8 2 8.6 2.8 1.5 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.19 gi|284172792|ref|YP_003406174.1| - 2.1e-52 177.2 0.0 2.8e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|284172792|ref|YP_003406174.1| - 6.2e-27 93.4 0.0 1.2e-26 92.5 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|284172792|ref|YP_003406174.1| - 0.00036 20.5 0.0 0.023 14.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU PF00009.27 gi|284172792|ref|YP_003406174.1| - 0.00056 19.5 0.0 0.49 9.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|284172792|ref|YP_003406174.1| - 0.00071 20.0 0.0 0.0014 19.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284172792|ref|YP_003406174.1| - 0.0018 18.6 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|284172792|ref|YP_003406174.1| - 0.0019 18.5 0.1 0.057 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|284172792|ref|YP_003406174.1| - 0.0031 16.6 0.1 0.0045 16.1 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|284172792|ref|YP_003406174.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|284172792|ref|YP_003406174.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|284172792|ref|YP_003406174.1| - 0.019 15.1 0.0 0.042 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284172792|ref|YP_003406174.1| - 0.024 15.2 0.1 0.038 14.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|284172792|ref|YP_003406174.1| - 0.034 14.0 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase MMR_HSR1 PF01926.23 gi|284172792|ref|YP_003406174.1| - 0.057 13.5 0.1 0.13 12.3 0.1 1.9 1 1 1 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|284172792|ref|YP_003406174.1| - 0.071 13.6 0.0 0.14 12.6 0.0 1.5 2 0 0 2 2 1 0 ABC transporter AAA_18 PF13238.6 gi|284172792|ref|YP_003406174.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284172792|ref|YP_003406174.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|284172792|ref|YP_003406174.1| - 0.22 11.5 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain EamA PF00892.20 gi|284172793|ref|YP_003406175.1| - 2.8e-13 50.2 18.4 3.1e-13 50.1 18.4 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|284172793|ref|YP_003406175.1| - 0.0089 15.2 4.4 0.0089 15.2 4.4 1.4 1 1 0 1 1 1 1 Magnesium transporter NIPA Ring_hydroxyl_A PF00848.19 gi|284172794|ref|YP_003406176.1| - 1.2e-17 64.6 11.2 6.3e-16 59.0 11.2 2.3 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|284172794|ref|YP_003406176.1| - 0.0095 15.9 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain IclR PF01614.18 gi|284172795|ref|YP_003406177.1| - 1.3e-28 99.4 0.0 2e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172795|ref|YP_003406177.1| - 4.9e-09 35.9 0.2 1.1e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284172795|ref|YP_003406177.1| - 0.00053 20.0 0.1 0.0019 18.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284172795|ref|YP_003406177.1| - 0.00057 19.4 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172795|ref|YP_003406177.1| - 0.00083 19.2 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284172795|ref|YP_003406177.1| - 0.0053 16.6 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284172795|ref|YP_003406177.1| - 0.0057 16.6 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|284172795|ref|YP_003406177.1| - 0.0075 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|284172795|ref|YP_003406177.1| - 0.021 15.0 0.0 0.049 13.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|284172795|ref|YP_003406177.1| - 0.03 14.8 0.0 0.071 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Fe-ADH PF00465.19 gi|284172797|ref|YP_003406179.1| - 8.7e-118 393.3 0.1 9.8e-118 393.1 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|284172797|ref|YP_003406179.1| - 1.6e-14 54.2 0.0 2e-11 44.1 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Aldedh PF00171.22 gi|284172798|ref|YP_003406180.1| - 4.8e-167 556.1 0.0 5.3e-167 556.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|284172798|ref|YP_003406180.1| - 0.016 14.7 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) BCCT PF02028.17 gi|284172799|ref|YP_003406181.1| - 7.6e-108 361.0 39.5 8.7e-108 360.8 39.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter EamA PF00892.20 gi|284172800|ref|YP_003406182.1| - 4.1e-15 56.1 16.5 4.5e-15 56.0 16.5 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|284172800|ref|YP_003406182.1| - 7.3e-06 25.3 6.7 7.3e-06 25.3 6.7 1.6 1 1 1 2 2 2 1 Magnesium transporter NIPA TMEM234 PF10639.9 gi|284172800|ref|YP_003406182.1| - 0.56 10.3 5.7 2 8.4 5.7 1.9 1 1 0 1 1 1 0 Putative transmembrane family 234 DUF3624 PF12292.8 gi|284172800|ref|YP_003406182.1| - 2.1 8.8 5.1 1.5 9.3 0.3 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3624) Ring_hydroxyl_A PF00848.19 gi|284172803|ref|YP_003406185.1| - 4.2e-17 62.8 11.4 1.7e-15 57.6 11.4 2.2 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|284172803|ref|YP_003406185.1| - 5.8e-17 61.4 0.0 1.3e-16 60.3 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|284172803|ref|YP_003406185.1| - 0.0074 16.2 0.0 0.025 14.5 0.0 1.8 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain Haem_degrading PF03928.14 gi|284172804|ref|YP_003406186.1| - 4.3e-33 113.9 0.0 4.9e-33 113.7 0.0 1.0 1 0 0 1 1 1 1 Haem-degrading GCV_T_C PF08669.11 gi|284172804|ref|YP_003406186.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain GCV_T PF01571.21 gi|284172805|ref|YP_003406187.1| - 6.2e-81 271.6 0.1 8.9e-81 271.0 0.1 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|284172805|ref|YP_003406187.1| - 1.9e-50 172.5 0.8 3.4e-50 171.6 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|284172805|ref|YP_003406187.1| - 2.8e-17 62.4 0.1 8.2e-17 60.9 0.0 1.9 2 0 0 2 2 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|284172805|ref|YP_003406187.1| - 1e-11 44.9 0.4 3.1e-11 43.4 0.4 1.9 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain SoxG PF04268.12 gi|284172805|ref|YP_003406187.1| - 7.9e-07 29.3 0.0 1.6e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family Pyr_redox PF00070.27 gi|284172805|ref|YP_003406187.1| - 1.7e-06 28.5 0.2 0.0014 19.2 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284172805|ref|YP_003406187.1| - 6.2e-06 25.5 0.1 1.9e-05 23.9 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284172805|ref|YP_003406187.1| - 1.5e-05 25.2 0.6 8.9e-05 22.7 0.0 2.5 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284172805|ref|YP_003406187.1| - 2.1e-05 23.9 0.1 0.0022 17.3 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172805|ref|YP_003406187.1| - 0.00096 18.5 0.2 0.19 10.9 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|284172805|ref|YP_003406187.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase TrkA_N PF02254.18 gi|284172805|ref|YP_003406187.1| - 0.015 15.5 0.0 0.054 13.7 0.0 2.0 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.14 gi|284172805|ref|YP_003406187.1| - 0.021 13.5 0.1 0.26 9.9 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein ThiF PF00899.21 gi|284172805|ref|YP_003406187.1| - 0.021 14.2 0.1 0.042 13.2 0.1 1.4 1 0 0 1 1 1 0 ThiF family ApbA PF02558.16 gi|284172805|ref|YP_003406187.1| - 0.03 13.9 0.1 0.063 12.9 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|284172805|ref|YP_003406187.1| - 0.059 12.4 1.8 0.14 11.1 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein AFOR_C PF01314.18 gi|284172806|ref|YP_003406188.1| - 9.4e-98 327.7 0.0 1.3e-97 327.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284172806|ref|YP_003406188.1| - 7.3e-64 215.3 0.1 1e-63 214.8 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain WW_1 PF18507.1 gi|284172808|ref|YP_003406190.1| - 0.08 12.6 0.6 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 WW domain DUF695 PF05117.12 gi|284172808|ref|YP_003406190.1| - 0.09 12.9 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF695) NADH_4Fe-4S PF10589.9 gi|284172809|ref|YP_003406191.1| - 6e-18 64.7 0.0 1.1e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|284172809|ref|YP_003406191.1| - 2.7e-14 53.3 0.0 4.3e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.9 gi|284172809|ref|YP_003406191.1| - 0.089 12.7 0.0 0.28 11.1 0.0 1.9 1 0 0 1 1 1 0 SLBB domain Molybdopterin PF00384.22 gi|284172810|ref|YP_003406192.1| - 7e-85 285.6 0.0 8.6e-85 285.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284172810|ref|YP_003406192.1| - 1.8e-31 108.5 0.0 3.5e-31 107.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|284172810|ref|YP_003406192.1| - 2.5e-28 97.9 0.5 5.6e-28 96.8 0.5 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|284172810|ref|YP_003406192.1| - 4.7e-13 48.4 1.0 4.7e-13 48.4 1.0 2.3 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 gi|284172810|ref|YP_003406192.1| - 1.1e-09 38.1 0.1 4.8e-09 36.1 0.1 2.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 gi|284172810|ref|YP_003406192.1| - 9.8e-09 35.2 8.5 9.8e-09 35.2 8.5 3.0 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284172810|ref|YP_003406192.1| - 3.3e-07 30.8 9.0 3.3e-07 30.8 9.0 3.7 3 2 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284172810|ref|YP_003406192.1| - 2.1e-06 27.3 23.4 2.5e-05 23.9 2.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284172810|ref|YP_003406192.1| - 6.5e-06 26.0 12.2 0.00029 20.8 2.5 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284172810|ref|YP_003406192.1| - 7.9e-06 25.9 8.3 7.9e-06 25.9 8.3 3.9 2 1 2 4 4 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284172810|ref|YP_003406192.1| - 9.5e-05 22.8 7.7 9.5e-05 22.8 7.7 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284172810|ref|YP_003406192.1| - 0.00038 21.3 0.4 0.00038 21.3 0.4 3.6 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|284172810|ref|YP_003406192.1| - 0.0021 18.1 13.2 0.0021 18.1 13.2 3.6 4 1 1 5 5 4 2 4Fe-4S dicluster domain CDC48_N PF02359.18 gi|284172810|ref|YP_003406192.1| - 0.036 14.3 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_15 PF13459.6 gi|284172810|ref|YP_003406192.1| - 0.079 13.7 14.1 0.3 11.9 2.4 4.1 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|284172810|ref|YP_003406192.1| - 0.32 11.9 14.2 0.4 11.5 1.2 3.9 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284172810|ref|YP_003406192.1| - 0.47 10.7 15.9 0.037 14.2 2.0 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|284172810|ref|YP_003406192.1| - 0.55 10.8 11.8 5.1 7.7 2.9 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Ribonuc_L-PSP PF01042.21 gi|284172812|ref|YP_003406194.1| - 9.2e-40 135.4 0.0 1e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|284172812|ref|YP_003406194.1| - 0.0083 16.3 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Rrn6 PF10214.9 gi|284172812|ref|YP_003406194.1| - 0.25 9.8 0.1 0.28 9.6 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor SHMT PF00464.19 gi|284172813|ref|YP_003406195.1| - 7.8e-157 522.0 0.1 9.2e-157 521.7 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|284172813|ref|YP_003406195.1| - 7e-09 35.3 0.0 1.2e-08 34.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284172813|ref|YP_003406195.1| - 0.00016 21.1 0.0 0.0067 15.7 0.0 2.0 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|284172813|ref|YP_003406195.1| - 0.00094 18.6 0.4 0.0013 18.1 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ATP-synt_F PF01990.17 gi|284172813|ref|YP_003406195.1| - 0.095 13.0 0.0 0.28 11.5 0.0 1.7 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit BCCT PF02028.17 gi|284172814|ref|YP_003406196.1| - 1.1e-159 532.1 46.2 1.3e-159 531.8 46.2 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter BCCT PF02028.17 gi|284172815|ref|YP_003406197.1| - 7.2e-155 516.1 40.2 9e-155 515.8 40.2 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter HalOD1 PF18545.1 gi|284172816|ref|YP_003406198.1| - 8.4e-35 118.9 1.2 1.2e-16 60.8 0.0 2.2 2 0 0 2 2 2 2 Halobacterial output domain 1 BCCT PF02028.17 gi|284172817|ref|YP_003406199.1| - 1.7e-145 485.2 40.9 1.9e-145 485.0 40.9 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter FHIPEP PF00771.20 gi|284172817|ref|YP_003406199.1| - 0.1 11.0 0.0 0.16 10.4 0.0 1.2 1 0 0 1 1 1 0 FHIPEP family DUF4239 PF14023.6 gi|284172817|ref|YP_003406199.1| - 0.83 9.3 6.7 0.32 10.7 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) BPD_transp_1 PF00528.22 gi|284172818|ref|YP_003406200.1| - 2.1e-22 79.8 17.9 2.8e-22 79.3 17.9 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|284172819|ref|YP_003406201.1| - 1.5e-36 126.0 0.0 2.7e-36 125.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284172819|ref|YP_003406201.1| - 4e-08 33.4 0.0 0.00051 19.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CBS PF00571.28 gi|284172819|ref|YP_003406201.1| - 2.3e-07 31.1 1.2 3.3e-07 30.6 0.1 1.9 2 0 0 2 2 1 1 CBS domain AAA_22 PF13401.6 gi|284172819|ref|YP_003406201.1| - 0.00023 21.4 0.1 0.00045 20.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284172819|ref|YP_003406201.1| - 0.0017 18.7 0.0 0.0029 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284172819|ref|YP_003406201.1| - 0.0019 18.1 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|284172819|ref|YP_003406201.1| - 0.0022 18.4 0.0 0.015 15.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284172819|ref|YP_003406201.1| - 0.0023 17.7 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|284172819|ref|YP_003406201.1| - 0.0025 17.8 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|284172819|ref|YP_003406201.1| - 0.004 17.1 0.0 0.013 15.4 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|284172819|ref|YP_003406201.1| - 0.0076 16.6 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_29 PF13555.6 gi|284172819|ref|YP_003406201.1| - 0.045 13.5 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|284172819|ref|YP_003406201.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284172819|ref|YP_003406201.1| - 0.061 13.8 0.1 0.14 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|284172819|ref|YP_003406201.1| - 0.073 13.1 0.0 0.19 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|284172819|ref|YP_003406201.1| - 0.089 12.3 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|284172819|ref|YP_003406201.1| - 0.11 12.1 0.2 0.38 10.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|284172819|ref|YP_003406201.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|284172819|ref|YP_003406201.1| - 0.11 11.9 0.0 6.2 6.2 0.1 2.2 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|284172819|ref|YP_003406201.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|284172819|ref|YP_003406201.1| - 0.17 12.1 0.1 0.4 10.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|284172819|ref|YP_003406201.1| - 0.18 11.0 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|284172819|ref|YP_003406201.1| - 0.21 11.8 0.6 0.6 10.3 0.6 1.9 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|284172820|ref|YP_003406202.1| - 4.4e-19 68.9 17.0 5.9e-19 68.5 17.0 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SecE PF00584.20 gi|284172820|ref|YP_003406202.1| - 0.061 13.3 0.3 0.061 13.3 0.3 3.1 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex OpuAC PF04069.12 gi|284172821|ref|YP_003406203.1| - 6.5e-47 160.3 0.0 7.4e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system IclR PF01614.18 gi|284172822|ref|YP_003406204.1| - 8.3e-29 100.0 0.0 1.9e-28 98.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172822|ref|YP_003406204.1| - 4.6e-07 29.5 0.0 3.2e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172822|ref|YP_003406204.1| - 4.9e-06 26.3 0.1 1.9e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284172822|ref|YP_003406204.1| - 3.9e-05 23.6 0.0 8.8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|284172822|ref|YP_003406204.1| - 0.00033 20.3 0.1 0.0014 18.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284172822|ref|YP_003406204.1| - 0.00073 19.4 0.1 0.0034 17.2 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284172822|ref|YP_003406204.1| - 0.0011 18.8 0.1 0.0028 17.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|284172822|ref|YP_003406204.1| - 0.0053 16.5 0.0 0.077 12.8 0.0 2.7 3 0 0 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|284172822|ref|YP_003406204.1| - 0.015 15.2 0.0 0.075 13.0 0.0 2.3 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.20 gi|284172822|ref|YP_003406204.1| - 0.017 15.4 0.0 0.042 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF742 PF05331.11 gi|284172822|ref|YP_003406204.1| - 0.042 13.7 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_24 PF13412.6 gi|284172822|ref|YP_003406204.1| - 0.066 12.8 0.0 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|284172822|ref|YP_003406204.1| - 0.079 12.6 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Amidohydro_2 PF04909.14 gi|284172824|ref|YP_003406206.1| - 9.8e-33 114.2 0.6 1.5e-32 113.6 0.6 1.4 1 1 0 1 1 1 1 Amidohydrolase Rieske PF00355.26 gi|284172825|ref|YP_003406207.1| - 2.6e-15 56.1 0.9 2.5e-14 53.0 0.9 2.0 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|284172825|ref|YP_003406207.1| - 3e-11 43.2 0.0 1.9e-05 24.5 0.0 2.0 2 0 0 2 2 2 2 Rieske-like [2Fe-2S] domain Aldedh PF00171.22 gi|284172826|ref|YP_003406208.1| - 7.9e-165 548.8 0.0 8.8e-165 548.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family COMMD1_N PF17221.3 gi|284172826|ref|YP_003406208.1| - 0.033 14.5 0.0 0.062 13.6 0.0 1.3 1 0 0 1 1 1 0 COMMD1 N-terminal domain LuxC PF05893.14 gi|284172826|ref|YP_003406208.1| - 0.19 10.8 0.1 0.54 9.2 0.0 1.8 2 0 0 2 2 2 0 Acyl-CoA reductase (LuxC) HalOD1 PF18545.1 gi|284172828|ref|YP_003406210.1| - 2.8e-24 85.1 0.8 2.8e-24 85.1 0.8 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 DEP PF00610.21 gi|284172830|ref|YP_003406212.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) PAC2 PF09754.9 gi|284172831|ref|YP_003406213.1| - 6.9e-20 72.0 0.6 8.1e-20 71.7 0.6 1.1 1 0 0 1 1 1 1 PAC2 family NTP_transf_3 PF12804.7 gi|284172831|ref|YP_003406213.1| - 0.0054 17.1 0.4 0.0067 16.8 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain HIP1_clath_bdg PF16515.5 gi|284172831|ref|YP_003406213.1| - 1.1 9.9 12.7 5.1 7.8 9.9 2.4 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Spc24 PF08286.11 gi|284172831|ref|YP_003406213.1| - 5.1 7.4 7.1 3.9 7.8 5.1 1.7 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DDE_Tnp_IS240 PF13610.6 gi|284172832|ref|YP_003406214.1| - 0.00013 22.3 0.0 0.00013 22.3 0.0 1.0 1 0 0 1 1 1 1 DDE domain Fic_N PF13784.6 gi|284172833|ref|YP_003406215.1| - 2.5e-24 85.1 0.7 4e-24 84.5 0.7 1.3 1 0 0 1 1 1 1 Fic/DOC family N-terminal DUF4172 PF13776.6 gi|284172833|ref|YP_003406215.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) OrfB_IS605 PF01385.19 gi|284172834|ref|YP_003406216.1| - 1.2e-22 80.3 0.0 3e-22 79.1 0.0 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|284172834|ref|YP_003406216.1| - 3.1e-21 75.1 1.0 6.2e-21 74.1 0.6 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|284172834|ref|YP_003406216.1| - 0.0055 17.0 0.8 0.014 15.7 0.8 1.6 1 0 0 1 1 1 1 C1 domain zf-ACC PF17848.1 gi|284172834|ref|YP_003406216.1| - 0.064 13.3 2.4 0.16 12.1 2.4 1.7 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain DUF4298 PF14131.6 gi|284172834|ref|YP_003406216.1| - 0.19 11.7 0.1 0.19 11.7 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4298) TF_Zn_Ribbon PF08271.12 gi|284172834|ref|YP_003406216.1| - 0.23 11.0 3.0 0.67 9.5 3.0 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_3 PF01381.22 gi|284172835|ref|YP_003406217.1| - 0.1 12.7 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix AAA_16 PF13191.6 gi|284172836|ref|YP_003406218.1| - 6.7e-13 49.4 0.4 2.4e-12 47.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284172836|ref|YP_003406218.1| - 1.8e-12 47.8 0.0 3.8e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|284172836|ref|YP_003406218.1| - 5.3e-09 35.9 0.1 1.8e-08 34.2 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain TniB PF05621.11 gi|284172836|ref|YP_003406218.1| - 2.1e-07 30.6 0.0 4.4e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein AAA_22 PF13401.6 gi|284172836|ref|YP_003406218.1| - 3.1e-07 30.7 0.0 8.8e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|284172836|ref|YP_003406218.1| - 4.4e-06 26.0 0.0 9.4e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|284172836|ref|YP_003406218.1| - 1.3e-05 25.2 0.0 2.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|284172836|ref|YP_003406218.1| - 0.00065 19.7 0.1 0.0025 17.8 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|284172836|ref|YP_003406218.1| - 0.0013 18.5 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|284172836|ref|YP_003406218.1| - 0.0013 18.3 0.0 0.0054 16.3 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region ABC_tran PF00005.27 gi|284172836|ref|YP_003406218.1| - 0.0015 19.1 0.1 0.0072 16.9 0.1 2.4 1 1 1 2 2 2 1 ABC transporter MMR_HSR1 PF01926.23 gi|284172836|ref|YP_003406218.1| - 0.0029 17.7 0.0 0.021 14.9 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|284172836|ref|YP_003406218.1| - 0.0062 17.1 0.1 0.43 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|284172836|ref|YP_003406218.1| - 0.012 15.9 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284172836|ref|YP_003406218.1| - 0.018 14.8 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|284172836|ref|YP_003406218.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|284172836|ref|YP_003406218.1| - 0.022 15.1 0.0 0.067 13.6 0.0 1.9 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|284172836|ref|YP_003406218.1| - 0.054 13.4 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 1 0 RsgA GTPase AAA_5 PF07728.14 gi|284172836|ref|YP_003406218.1| - 0.061 13.3 0.0 0.37 10.8 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|284172836|ref|YP_003406218.1| - 0.067 12.9 0.0 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|284172836|ref|YP_003406218.1| - 0.092 12.3 0.0 0.6 9.6 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|284172837|ref|YP_003406219.1| - 2.7e-28 99.1 0.0 3.9e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284172837|ref|YP_003406219.1| - 2e-10 40.8 0.0 3.1e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|284172837|ref|YP_003406219.1| - 1.3e-05 24.8 0.0 0.00059 19.4 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284172837|ref|YP_003406219.1| - 4.8e-05 22.9 0.0 9.5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|284172837|ref|YP_003406219.1| - 0.00089 18.6 0.0 0.05 12.9 0.0 2.4 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|284172837|ref|YP_003406219.1| - 0.00095 18.7 0.1 0.006 16.1 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|284172837|ref|YP_003406219.1| - 0.0011 18.2 0.4 0.025 13.8 0.0 2.6 3 0 0 3 3 3 1 Anion-transporting ATPase Lin-8 PF03353.15 gi|284172838|ref|YP_003406220.1| - 0.051 13.1 8.7 0.095 12.2 8.7 1.4 1 1 0 1 1 1 0 Ras-mediated vulval-induction antagonist LAP1C PF05609.12 gi|284172838|ref|YP_003406220.1| - 1.1 8.2 10.3 1.3 8.1 10.3 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) SPX PF03105.19 gi|284172838|ref|YP_003406220.1| - 2.1 8.2 13.1 2.2 8.1 13.1 1.1 1 0 0 1 1 1 0 SPX domain BUD22 PF09073.10 gi|284172838|ref|YP_003406220.1| - 3.2 7.0 20.8 4 6.7 20.8 1.0 1 0 0 1 1 1 0 BUD22 GREB1 PF15782.5 gi|284172838|ref|YP_003406220.1| - 7.2 3.6 6.1 8.1 3.4 6.1 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Presenilin PF01080.17 gi|284172838|ref|YP_003406220.1| - 9.4 4.9 7.6 10 4.8 7.6 1.1 1 0 0 1 1 1 0 Presenilin Apt1 PF10351.9 gi|284172838|ref|YP_003406220.1| - 9.8 4.9 10.3 9.7 4.9 10.3 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain PadR PF03551.14 gi|284172839|ref|YP_003406221.1| - 2.6e-17 62.6 1.4 3.1e-17 62.3 1.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|284172839|ref|YP_003406221.1| - 0.0037 17.0 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|284172839|ref|YP_003406221.1| - 0.0043 17.0 0.1 0.0059 16.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|284172839|ref|YP_003406221.1| - 0.037 13.9 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|284172839|ref|YP_003406221.1| - 0.075 13.5 0.2 0.093 13.2 0.2 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain AsnC_trans_reg PF01037.21 gi|284172840|ref|YP_003406222.1| - 7.2e-13 48.3 0.0 1.2e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|284172840|ref|YP_003406222.1| - 9.7e-11 41.1 1.2 1.3e-10 40.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172840|ref|YP_003406222.1| - 2.8e-08 33.5 0.7 1.1e-07 31.6 0.2 2.1 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284172840|ref|YP_003406222.1| - 2.6e-07 30.5 0.1 7e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|284172840|ref|YP_003406222.1| - 2.7e-06 27.1 0.2 4.3e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|284172840|ref|YP_003406222.1| - 1.9e-05 24.3 0.1 0.00012 21.8 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|284172840|ref|YP_003406222.1| - 5.6e-05 22.7 0.1 0.00012 21.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|284172840|ref|YP_003406222.1| - 0.00014 21.8 0.1 0.00024 21.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284172840|ref|YP_003406222.1| - 0.00051 20.0 0.0 0.00083 19.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284172840|ref|YP_003406222.1| - 0.00097 19.0 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|284172840|ref|YP_003406222.1| - 0.00097 18.9 0.1 0.0018 18.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|284172840|ref|YP_003406222.1| - 0.0012 18.7 0.1 0.0023 17.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|284172840|ref|YP_003406222.1| - 0.0028 17.4 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|284172840|ref|YP_003406222.1| - 0.0041 17.2 0.0 0.0067 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|284172840|ref|YP_003406222.1| - 0.011 16.1 0.1 0.045 14.2 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|284172840|ref|YP_003406222.1| - 0.014 15.1 0.1 0.093 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|284172840|ref|YP_003406222.1| - 0.028 14.5 0.0 0.084 13.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|284172840|ref|YP_003406222.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Mga PF05043.13 gi|284172840|ref|YP_003406222.1| - 0.038 14.6 0.1 0.14 12.8 0.0 1.9 3 0 0 3 3 1 0 Mga helix-turn-helix domain HTH_23 PF13384.6 gi|284172840|ref|YP_003406222.1| - 0.04 13.7 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.6 gi|284172840|ref|YP_003406222.1| - 0.045 13.9 0.1 0.1 12.8 0.0 1.5 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|284172840|ref|YP_003406222.1| - 0.047 13.5 0.1 0.081 12.7 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_50 PF18024.1 gi|284172840|ref|YP_003406222.1| - 0.048 13.3 0.0 0.099 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284172840|ref|YP_003406222.1| - 0.055 13.7 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_47 PF16221.5 gi|284172840|ref|YP_003406222.1| - 0.07 12.7 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Trp_repressor PF01371.19 gi|284172840|ref|YP_003406222.1| - 0.07 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein DUF4250 PF14056.6 gi|284172840|ref|YP_003406222.1| - 0.1 12.5 0.8 0.26 11.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) Rrf2 PF02082.20 gi|284172840|ref|YP_003406222.1| - 0.12 12.7 0.0 0.33 11.3 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|284172840|ref|YP_003406222.1| - 0.13 12.8 0.1 0.31 11.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DLH PF01738.18 gi|284172841|ref|YP_003406223.1| - 1.6e-08 34.4 0.0 5.1e-08 32.7 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|284172841|ref|YP_003406223.1| - 2.5e-08 33.7 0.2 6.8e-08 32.2 0.2 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|284172841|ref|YP_003406223.1| - 5e-07 29.6 0.0 0.0022 17.7 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_7 PF12715.7 gi|284172841|ref|YP_003406223.1| - 0.00029 20.2 0.0 0.0019 17.5 0.0 1.9 1 1 0 1 1 1 1 Abhydrolase family BAAT_C PF08840.11 gi|284172841|ref|YP_003406223.1| - 0.00075 19.5 0.0 0.0046 16.9 0.0 1.9 1 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|284172841|ref|YP_003406223.1| - 0.00087 20.0 2.9 0.013 16.2 2.5 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284172841|ref|YP_003406223.1| - 0.002 17.4 0.3 0.53 9.5 0.1 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 PGAP1 PF07819.13 gi|284172841|ref|YP_003406223.1| - 0.0099 15.6 0.0 0.021 14.5 0.0 1.3 1 1 0 1 1 1 1 PGAP1-like protein FSH1 PF03959.13 gi|284172841|ref|YP_003406223.1| - 0.23 11.1 0.0 0.68 9.5 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase (FSH1) tRNA-synt_2b PF00587.25 gi|284172842|ref|YP_003406224.1| - 0.024 14.6 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF21 PF01595.20 gi|284172843|ref|YP_003406225.1| - 2.6e-50 170.6 1.9 3.8e-50 170.0 1.9 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|284172843|ref|YP_003406225.1| - 2.5e-21 75.5 2.4 2.5e-21 75.5 2.4 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|284172843|ref|YP_003406225.1| - 6.1e-13 49.0 3.2 1.6e-05 25.2 0.2 2.8 2 0 0 2 2 2 2 CBS domain CbiX PF01903.17 gi|284172843|ref|YP_003406225.1| - 0.086 13.2 1.5 1.1 9.6 0.3 2.4 2 0 0 2 2 2 0 CbiX Beta_helix PF13229.6 gi|284172846|ref|YP_003406228.1| - 4e-06 26.8 5.3 0.012 15.5 0.2 3.0 2 1 1 3 3 3 2 Right handed beta helix region DUF1349 PF07081.11 gi|284172846|ref|YP_003406228.1| - 4.2e-05 23.4 0.1 0.00029 20.6 0.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1349) NosD PF05048.13 gi|284172846|ref|YP_003406228.1| - 0.051 12.8 1.6 0.55 9.5 0.7 2.3 2 1 0 2 2 2 0 Periplasmic copper-binding protein (NosD) Pec_lyase_C PF00544.19 gi|284172846|ref|YP_003406228.1| - 0.094 12.3 1.8 0.32 10.5 1.8 1.9 1 1 0 1 1 1 0 Pectate lyase Glyco_transf_92 PF01697.27 gi|284172846|ref|YP_003406228.1| - 0.19 11.3 0.0 0.35 10.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 92 IclR PF01614.18 gi|284172847|ref|YP_003406229.1| - 1.1e-36 125.5 0.1 1.7e-36 124.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172847|ref|YP_003406229.1| - 2.4e-11 43.3 0.1 1e-10 41.3 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284172847|ref|YP_003406229.1| - 1.6e-09 37.1 0.0 3.4e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284172847|ref|YP_003406229.1| - 5.6e-08 32.5 0.0 1.4e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|284172847|ref|YP_003406229.1| - 2.7e-05 24.0 0.1 0.00014 21.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|284172847|ref|YP_003406229.1| - 3.4e-05 23.8 0.1 0.0001 22.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172847|ref|YP_003406229.1| - 5.2e-05 23.0 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|284172847|ref|YP_003406229.1| - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284172847|ref|YP_003406229.1| - 0.001 18.7 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|284172847|ref|YP_003406229.1| - 0.0021 17.8 0.1 0.0046 16.7 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284172847|ref|YP_003406229.1| - 0.0044 17.0 0.1 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|284172847|ref|YP_003406229.1| - 0.0047 16.7 0.0 0.017 14.9 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|284172847|ref|YP_003406229.1| - 0.0073 16.1 0.0 0.021 14.6 0.0 1.8 2 0 0 2 2 1 1 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|284172847|ref|YP_003406229.1| - 0.01 15.7 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284172847|ref|YP_003406229.1| - 0.034 14.0 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB KfrA_N PF11740.8 gi|284172847|ref|YP_003406229.1| - 0.064 13.9 0.0 0.2 12.3 0.0 1.9 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_1 PF00126.27 gi|284172847|ref|YP_003406229.1| - 0.087 12.8 0.3 0.36 10.8 0.0 2.2 3 0 0 3 3 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|284172847|ref|YP_003406229.1| - 0.089 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|284172847|ref|YP_003406229.1| - 0.1 12.8 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|284172847|ref|YP_003406229.1| - 0.12 12.9 0.1 0.35 11.4 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|284172847|ref|YP_003406229.1| - 0.12 12.5 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain T7SS_ESX_EspC PF10824.8 gi|284172847|ref|YP_003406229.1| - 0.41 11.1 0.1 0.41 11.1 0.1 2.5 4 0 0 4 4 2 0 Excreted virulence factor EspC, type VII ESX diderm Beta_helix PF13229.6 gi|284172848|ref|YP_003406230.1| - 0.0032 17.4 3.8 0.0076 16.1 1.0 2.2 1 1 1 2 2 2 2 Right handed beta helix region Pec_lyase_C PF00544.19 gi|284172848|ref|YP_003406230.1| - 0.0097 15.5 0.3 0.038 13.6 0.3 1.8 1 1 0 1 1 1 1 Pectate lyase Pectate_lyase_2 PF06917.12 gi|284172849|ref|YP_003406231.1| - 3.9e-73 246.9 0.0 1.6e-70 238.3 0.0 2.9 1 1 0 1 1 1 1 Periplasmic pectate lyase GlcNAc_2-epim PF07221.11 gi|284172849|ref|YP_003406231.1| - 0.012 14.9 0.4 0.25 10.5 0.0 2.6 3 0 0 3 3 3 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_4 PF02056.16 gi|284172850|ref|YP_003406232.1| - 1.1e-50 171.7 0.0 1.8e-50 171.1 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|284172850|ref|YP_003406232.1| - 3e-44 151.6 0.0 4.4e-44 151.1 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|284172850|ref|YP_003406232.1| - 0.084 13.0 0.1 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Secretin PF00263.21 gi|284172851|ref|YP_003406233.1| - 0.054 13.1 0.8 0.18 11.5 0.8 1.8 1 0 0 1 1 1 0 Bacterial type II and III secretion system protein Cas6_N PF17952.1 gi|284172851|ref|YP_003406233.1| - 0.073 13.4 0.7 1 9.7 0.0 3.0 4 0 0 4 4 4 0 Cas6 N-terminal domain DUF1349 PF07081.11 gi|284172852|ref|YP_003406234.1| - 2e-10 40.7 0.0 3.7e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) TAT_signal PF10518.9 gi|284172852|ref|YP_003406234.1| - 0.0008 19.2 0.3 0.0018 18.1 0.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|284172852|ref|YP_003406234.1| - 0.0034 17.2 11.7 0.22 11.3 1.0 2.7 2 1 2 4 4 4 3 Right handed beta helix region DUF1583 PF07622.11 gi|284172852|ref|YP_003406234.1| - 0.023 13.4 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1583) Glyco_hydro_28 PF00295.17 gi|284172853|ref|YP_003406235.1| - 6.2e-50 170.1 4.4 2.4e-48 164.9 2.3 3.0 3 1 0 3 3 3 1 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.7 gi|284172853|ref|YP_003406235.1| - 2.9e-17 63.3 4.2 4.3e-10 39.8 0.0 2.8 2 1 0 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|284172853|ref|YP_003406235.1| - 3.2e-11 43.3 4.2 1.4e-07 31.5 8.7 3.0 2 1 0 2 2 2 1 Right handed beta helix region NosD PF05048.13 gi|284172853|ref|YP_003406235.1| - 8e-05 22.0 4.1 0.00096 18.5 0.8 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Pec_lyase_C PF00544.19 gi|284172853|ref|YP_003406235.1| - 0.0022 17.6 1.6 0.0046 16.6 1.6 1.5 1 0 0 1 1 1 1 Pectate lyase DUF1565 PF07602.11 gi|284172853|ref|YP_003406235.1| - 0.0028 17.0 0.5 0.0063 15.9 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1565) DUF4957 PF16318.5 gi|284172853|ref|YP_003406235.1| - 0.0069 16.3 0.5 0.053 13.5 0.2 2.5 3 1 1 4 4 4 1 Domain of unknown function (DUF4957) Response_reg PF00072.24 gi|284172859|ref|YP_003406240.1| - 1.2e-15 57.7 0.2 1.4e-15 57.4 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TackOD1 PF18551.1 gi|284172860|ref|YP_003406241.1| - 1.4e-29 103.1 0.4 2.1e-29 102.5 0.4 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|284172860|ref|YP_003406241.1| - 8.3e-06 24.9 0.0 8.3e-06 24.9 0.0 1.7 2 0 0 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase zinc-ribbons_6 PF07191.12 gi|284172860|ref|YP_003406241.1| - 0.0019 18.1 8.3 0.09 12.8 1.3 2.5 2 0 0 2 2 2 2 zinc-ribbons DZR PF12773.7 gi|284172860|ref|YP_003406241.1| - 0.02 14.9 12.3 0.67 10.0 2.7 2.6 1 1 1 2 2 2 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|284172860|ref|YP_003406241.1| - 0.1 12.6 0.1 0.1 12.6 0.1 3.6 3 1 1 4 4 3 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|284172860|ref|YP_003406241.1| - 0.13 12.3 12.2 0.53 10.3 0.8 3.2 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|284172860|ref|YP_003406241.1| - 0.28 10.8 16.3 2.4 7.8 0.2 4.7 5 0 0 5 5 5 0 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|284172860|ref|YP_003406241.1| - 0.3 11.6 4.6 62 4.3 0.1 3.9 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-HIT PF04438.16 gi|284172860|ref|YP_003406241.1| - 1.4 8.9 8.2 17 5.3 0.0 3.9 3 1 1 4 4 4 0 HIT zinc finger Nudix_N_2 PF14803.6 gi|284172860|ref|YP_003406241.1| - 1.9 8.4 17.9 0.75 9.8 2.4 4.9 4 1 0 4 4 4 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|284172860|ref|YP_003406241.1| - 2 8.5 16.1 2.3 8.3 0.2 3.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon DnaJ_CXXCXGXG PF00684.19 gi|284172860|ref|YP_003406241.1| - 2.4 8.6 8.1 1.8 9.0 0.5 2.6 2 1 0 2 2 2 0 DnaJ central domain zinc_ribbon_15 PF17032.5 gi|284172860|ref|YP_003406241.1| - 3.1 8.6 9.9 56 4.6 9.9 2.3 1 1 0 1 1 1 0 zinc-ribbon family zf-piccolo PF05715.13 gi|284172860|ref|YP_003406241.1| - 3.3 7.9 7.4 9.2 6.5 0.5 2.6 2 0 0 2 2 2 0 Piccolo Zn-finger Rubredoxin PF00301.20 gi|284172860|ref|YP_003406241.1| - 3.5 7.7 9.3 2.7 8.1 0.2 3.6 4 0 0 4 4 4 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|284172860|ref|YP_003406241.1| - 4.3 6.9 6.1 13 5.4 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|284172860|ref|YP_003406241.1| - 6.6 6.8 13.7 1.9 8.4 1.6 4.2 4 1 0 4 4 4 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|284172860|ref|YP_003406241.1| - 8.3 6.3 13.6 18 5.2 0.1 4.3 3 1 0 3 3 3 0 A2L zinc ribbon domain PIN PF01850.21 gi|284172861|ref|YP_003406242.1| - 0.052 14.0 0.5 0.1 13.1 0.2 1.6 2 0 0 2 2 2 0 PIN domain RHH_1 PF01402.21 gi|284172863|ref|YP_003406244.1| - 0.56 10.2 3.4 4.7 7.3 3.4 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family HTH_20 PF12840.7 gi|284172864|ref|YP_003406245.1| - 0.00069 19.6 0.3 0.0018 18.3 0.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HNH PF01844.23 gi|284172866|ref|YP_003406247.1| - 2.7e-06 27.5 0.0 5.7e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|284172866|ref|YP_003406247.1| - 0.0084 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.6 gi|284172866|ref|YP_003406247.1| - 0.022 14.9 0.3 0.14 12.3 0.3 2.1 1 1 0 1 1 1 0 HNH endonuclease UPF0154 PF03672.13 gi|284172866|ref|YP_003406247.1| - 0.059 13.4 0.0 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) Regulator_TrmB PF11495.8 gi|284172868|ref|YP_003406249.1| - 9.4e-05 21.7 0.0 0.00014 21.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_12 PF08461.10 gi|284172868|ref|YP_003406249.1| - 0.0021 18.0 0.2 1.3 9.0 0.0 3.2 2 1 0 2 2 2 2 Ribonuclease R winged-helix domain DtxR PF18357.1 gi|284172868|ref|YP_003406249.1| - 0.42 10.3 1.8 0.93 9.2 1.8 1.6 1 0 0 1 1 1 0 Diphteria toxin repressor SH3 domain ATPase_2 PF01637.18 gi|284172869|ref|YP_003406250.1| - 2.2e-22 80.1 0.0 1.7e-21 77.3 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|284172869|ref|YP_003406250.1| - 4.9e-20 71.8 0.0 9.6e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|284172869|ref|YP_003406250.1| - 6.3e-07 29.5 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284172869|ref|YP_003406250.1| - 2.6e-05 24.5 0.0 5e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284172869|ref|YP_003406250.1| - 0.00014 22.3 0.5 0.0045 17.4 0.5 2.7 1 1 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.7 gi|284172869|ref|YP_003406250.1| - 0.0033 17.3 0.0 0.012 15.5 0.0 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284172869|ref|YP_003406250.1| - 0.0045 16.8 0.0 0.0092 15.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mrr_cat PF04471.12 gi|284172869|ref|YP_003406250.1| - 0.02 14.9 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Restriction endonuclease HTH_24 PF13412.6 gi|284172869|ref|YP_003406250.1| - 0.072 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284172869|ref|YP_003406250.1| - 0.077 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DiS_P_DiS PF06750.13 gi|284172870|ref|YP_003406251.1| - 0.1 12.7 0.3 0.13 12.4 0.3 1.5 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain DoxX PF07681.12 gi|284172871|ref|YP_003406252.1| - 4.3e-14 52.9 12.1 4.3e-14 52.9 12.1 1.5 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|284172871|ref|YP_003406252.1| - 2.8e-06 27.3 2.2 2.8e-06 27.3 2.2 1.6 2 0 0 2 2 2 1 TQO small subunit DoxD ATP-synt_A PF00119.20 gi|284172871|ref|YP_003406252.1| - 0.029 14.3 3.1 0.037 14.0 3.1 1.1 1 0 0 1 1 1 0 ATP synthase A chain DUF3824 PF12868.7 gi|284172874|ref|YP_003406255.1| - 0.023 15.3 0.9 0.031 14.9 0.9 1.1 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) FAM176 PF14851.6 gi|284172874|ref|YP_003406255.1| - 0.23 11.1 2.8 0.34 10.5 2.8 1.2 1 0 0 1 1 1 0 FAM176 family HTH_22 PF13309.6 gi|284172875|ref|YP_003406256.1| - 0.01 15.9 0.5 6.9 6.8 0.0 3.4 2 1 1 3 3 3 0 HTH domain Bac_globin PF01152.21 gi|284172877|ref|YP_003406258.1| - 2.8e-17 63.0 0.0 3e-17 62.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|284172877|ref|YP_003406258.1| - 0.00072 19.5 0.0 0.0017 18.3 0.0 1.7 1 1 0 1 1 1 1 Protoglobin STI1 PF17830.1 gi|284172877|ref|YP_003406258.1| - 0.053 13.5 0.4 0.11 12.5 0.2 1.6 2 0 0 2 2 2 0 STI1 domain DUF1604 PF07713.13 gi|284172877|ref|YP_003406258.1| - 0.11 12.3 2.6 3.1 7.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1604) Usp PF00582.26 gi|284172878|ref|YP_003406259.1| - 3.8e-09 37.2 0.0 7.6e-09 36.2 0.0 1.5 1 1 0 1 1 1 1 Universal stress protein family SBP_bac_11 PF13531.6 gi|284172878|ref|YP_003406259.1| - 0.064 13.0 0.1 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF1272 PF06906.11 gi|284172880|ref|YP_003406261.1| - 7.7e-07 29.1 0.7 8.2e-07 29.0 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-C2HC5 PF06221.13 gi|284172880|ref|YP_003406261.1| - 5.2e-05 23.1 0.7 5.4e-05 23.1 0.7 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|284172880|ref|YP_003406261.1| - 0.00033 20.6 1.1 0.00038 20.4 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|284172880|ref|YP_003406261.1| - 0.0012 18.8 0.6 0.0013 18.8 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284172880|ref|YP_003406261.1| - 0.0019 18.2 3.4 0.0041 17.2 3.4 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284172880|ref|YP_003406261.1| - 0.0097 15.3 3.1 1.1 8.7 1.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|284172880|ref|YP_003406261.1| - 0.013 15.7 1.3 0.026 14.8 1.3 1.5 1 0 0 1 1 1 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|284172880|ref|YP_003406261.1| - 0.02 14.8 0.5 0.023 14.6 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Spt4 PF06093.13 gi|284172880|ref|YP_003406261.1| - 0.031 14.4 0.6 0.039 14.0 0.6 1.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger TackOD1 PF18551.1 gi|284172880|ref|YP_003406261.1| - 0.034 13.8 0.3 0.034 13.8 0.3 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Prim_Zn_Ribbon PF08273.12 gi|284172880|ref|YP_003406261.1| - 0.044 14.1 2.1 0.044 14.1 2.1 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-AN1 PF01428.16 gi|284172880|ref|YP_003406261.1| - 0.045 13.9 1.6 0.84 9.9 2.2 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger Sgf11 PF08209.11 gi|284172880|ref|YP_003406261.1| - 0.047 13.3 2.1 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rubredoxin_2 PF18073.1 gi|284172880|ref|YP_003406261.1| - 0.047 13.4 3.0 0.11 12.3 3.0 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF1610 PF07754.11 gi|284172880|ref|YP_003406261.1| - 0.05 13.6 4.8 1.8 8.6 2.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_Rg PF17915.1 gi|284172880|ref|YP_003406261.1| - 0.056 12.8 1.2 0.056 12.8 1.2 1.9 1 1 1 2 2 2 0 Reverse gyrase zinc finger zf-C2H2_4 PF13894.6 gi|284172880|ref|YP_003406261.1| - 0.099 13.5 1.1 8.7 7.5 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.6 gi|284172880|ref|YP_003406261.1| - 0.15 12.0 3.3 7.2 6.6 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal YhfH PF14149.6 gi|284172880|ref|YP_003406261.1| - 0.32 11.0 4.4 2.6 8.1 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein TRAF6_Z2 PF18048.1 gi|284172880|ref|YP_003406261.1| - 0.4 10.8 3.7 0.68 10.1 0.6 2.1 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zf-H2C2_2 PF13465.6 gi|284172880|ref|YP_003406261.1| - 1.5 9.4 3.9 17 6.0 0.5 2.2 1 1 1 2 2 2 0 Zinc-finger double domain PadR PF03551.14 gi|284172881|ref|YP_003406262.1| - 2.2e-12 46.7 0.1 2.6e-12 46.5 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4358 PF14270.6 gi|284172881|ref|YP_003406262.1| - 0.034 14.4 0.0 0.06 13.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4358) FUR PF01475.19 gi|284172881|ref|YP_003406262.1| - 0.062 13.4 0.0 0.072 13.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_CodY PF08222.11 gi|284172884|ref|YP_003406265.1| - 0.011 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_20 PF12840.7 gi|284172884|ref|YP_003406265.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PIN PF01850.21 gi|284172885|ref|YP_003406266.1| - 7.4e-15 55.5 0.1 9.2e-15 55.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain HTH_20 PF12840.7 gi|284172886|ref|YP_003406267.1| - 0.0024 17.9 0.1 0.0041 17.2 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172887|ref|YP_003406268.1| - 2e-05 24.4 0.2 3.3e-05 23.7 0.2 1.3 1 0 0 1 1 1 1 HTH domain MerR PF00376.23 gi|284172887|ref|YP_003406268.1| - 0.00044 20.0 0.3 0.0011 18.7 0.3 1.7 1 1 0 1 1 1 1 MerR family regulatory protein DAO PF01266.24 gi|284172887|ref|YP_003406268.1| - 0.00061 19.5 0.0 0.00064 19.4 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HTH_24 PF13412.6 gi|284172887|ref|YP_003406268.1| - 0.00092 18.7 0.3 0.0018 17.8 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|284172887|ref|YP_003406268.1| - 0.002 17.9 0.5 0.0055 16.5 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.21 gi|284172887|ref|YP_003406268.1| - 0.0082 15.8 0.1 0.025 14.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family NAD_binding_8 PF13450.6 gi|284172887|ref|YP_003406268.1| - 0.063 13.5 0.1 0.18 12.1 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MarR_2 PF12802.7 gi|284172887|ref|YP_003406268.1| - 0.079 12.9 1.0 0.17 11.8 0.4 1.9 2 0 0 2 2 2 0 MarR family Abhydrolase_6 PF12697.7 gi|284172887|ref|YP_003406268.1| - 0.13 12.9 6.6 0.29 11.7 6.6 1.6 1 1 0 1 1 1 0 Alpha/beta hydrolase family MerR_1 PF13411.6 gi|284172887|ref|YP_003406268.1| - 0.17 12.0 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein DEP PF00610.21 gi|284172889|ref|YP_003406270.1| - 0.075 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) PadR PF03551.14 gi|284172890|ref|YP_003406271.1| - 2.5e-13 49.8 0.2 3e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284172890|ref|YP_003406271.1| - 0.0027 17.7 0.1 0.0035 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|284172890|ref|YP_003406271.1| - 0.027 14.8 0.0 0.041 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_34 PF13601.6 gi|284172890|ref|YP_003406271.1| - 0.1 12.8 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|284172890|ref|YP_003406271.1| - 0.1 12.4 0.1 0.15 11.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DAO PF01266.24 gi|284172893|ref|YP_003406274.1| - 7.5e-66 223.1 0.1 8.5e-66 222.9 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284172893|ref|YP_003406274.1| - 1.8e-08 34.0 0.1 0.0012 18.1 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|284172893|ref|YP_003406274.1| - 1.1e-07 31.1 0.6 9.2e-06 24.8 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|284172893|ref|YP_003406274.1| - 1.1e-06 29.1 0.2 0.028 15.0 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172893|ref|YP_003406274.1| - 5.1e-06 26.0 0.0 0.0092 15.3 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284172893|ref|YP_003406274.1| - 1.1e-05 25.5 0.0 3.5e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284172893|ref|YP_003406274.1| - 1.2e-05 24.2 0.2 0.0045 15.7 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|284172893|ref|YP_003406274.1| - 2.6e-05 23.6 0.2 8.5e-05 21.9 0.1 1.7 2 0 0 2 2 2 1 Thi4 family GMC_oxred_N PF00732.19 gi|284172893|ref|YP_003406274.1| - 0.00022 20.7 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|284172893|ref|YP_003406274.1| - 0.00032 20.7 0.9 0.0059 16.6 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|284172893|ref|YP_003406274.1| - 0.0023 17.1 0.1 0.0047 16.1 0.1 1.5 1 1 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 gi|284172893|ref|YP_003406274.1| - 0.02 14.2 0.3 0.11 11.8 0.1 2.0 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|284172893|ref|YP_003406274.1| - 0.028 13.5 0.6 2.3 7.2 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Mqo PF06039.15 gi|284172893|ref|YP_003406274.1| - 0.056 12.0 0.1 0.077 11.5 0.1 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) ApbA PF02558.16 gi|284172893|ref|YP_003406274.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|284172893|ref|YP_003406274.1| - 0.091 11.8 0.6 1.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|284172893|ref|YP_003406274.1| - 0.18 11.0 0.3 0.93 8.7 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|284172893|ref|YP_003406274.1| - 0.18 12.0 0.1 0.37 11.0 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain SSF PF00474.17 gi|284172895|ref|YP_003406276.1| - 3.8e-68 230.2 32.2 4.8e-68 229.9 32.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family SPT_ssu-like PF11779.8 gi|284172896|ref|YP_003406277.1| - 0.014 15.0 0.9 0.015 14.9 0.9 1.1 1 0 0 1 1 1 0 Small subunit of serine palmitoyltransferase-like AAA_17 PF13207.6 gi|284172897|ref|YP_003406278.1| - 0.099 13.1 0.0 0.099 13.1 0.0 1.0 1 0 0 1 1 1 0 AAA domain HalOD1 PF18545.1 gi|284172898|ref|YP_003406279.1| - 3.1e-20 72.2 0.0 4e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|284172899|ref|YP_003406280.1| - 3.2e-15 55.7 0.0 4.9e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|284172899|ref|YP_003406280.1| - 0.00043 19.8 0.2 0.001 18.6 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284172899|ref|YP_003406280.1| - 0.082 12.8 0.2 0.19 11.6 0.2 1.6 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|284172901|ref|YP_003406282.1| - 0.00016 21.2 0.1 0.00054 19.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284172901|ref|YP_003406282.1| - 0.00021 21.1 1.9 0.00022 21.1 0.1 2.0 2 0 0 2 2 1 1 HTH domain GntR PF00392.21 gi|284172901|ref|YP_003406282.1| - 0.0012 18.4 0.5 0.0063 16.1 0.2 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|284172901|ref|YP_003406282.1| - 0.0015 18.2 0.7 0.013 15.3 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain MerR PF00376.23 gi|284172901|ref|YP_003406282.1| - 0.0043 16.8 0.2 0.015 15.1 0.2 1.9 1 0 0 1 1 1 1 MerR family regulatory protein MarR_2 PF12802.7 gi|284172901|ref|YP_003406282.1| - 0.0044 16.9 6.1 0.23 11.4 0.5 3.4 2 1 0 2 2 2 2 MarR family HTH_3 PF01381.22 gi|284172901|ref|YP_003406282.1| - 0.0056 16.7 0.2 0.036 14.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|284172901|ref|YP_003406282.1| - 0.0072 16.7 0.2 0.092 13.1 0.2 3.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|284172901|ref|YP_003406282.1| - 0.0079 16.1 0.0 0.041 13.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172901|ref|YP_003406282.1| - 0.023 14.5 0.3 0.097 12.5 0.3 2.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3516 PF12029.8 gi|284172901|ref|YP_003406282.1| - 0.037 13.1 1.6 0.06 12.4 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3516) Sigma70_r4_2 PF08281.12 gi|284172901|ref|YP_003406282.1| - 0.071 12.8 0.1 1.4 8.6 0.0 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|284172901|ref|YP_003406282.1| - 0.072 13.1 0.7 0.39 10.7 0.2 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MerR_1 PF13411.6 gi|284172901|ref|YP_003406282.1| - 0.15 12.2 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein EC042_2821 PF18740.1 gi|284172903|ref|YP_003406284.1| - 0.016 15.1 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 EC042_2821-lke REase DUF1108 PF06531.11 gi|284172903|ref|YP_003406284.1| - 0.029 14.7 0.1 0.049 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) LSM PF01423.22 gi|284172903|ref|YP_003406284.1| - 0.035 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 LSM domain DUF1408 PF07193.11 gi|284172903|ref|YP_003406284.1| - 0.07 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1408) HTH_24 PF13412.6 gi|284172904|ref|YP_003406285.1| - 5.2e-06 25.9 0.0 6.1e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RepL PF05732.11 gi|284172904|ref|YP_003406285.1| - 0.0056 16.1 0.0 0.0057 16.1 0.0 1.1 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|284172904|ref|YP_003406285.1| - 0.017 15.0 0.1 0.022 14.6 0.1 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|284172904|ref|YP_003406285.1| - 0.019 14.8 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|284172904|ref|YP_003406285.1| - 0.11 12.8 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator U5_2-snRNA_bdg PF10597.9 gi|284172905|ref|YP_003406286.1| - 0.14 12.2 0.1 0.14 12.2 0.1 1.0 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 DUF2207 PF09972.9 gi|284172908|ref|YP_003406289.1| - 0.013 14.3 0.1 0.013 14.3 0.1 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) PAP2 PF01569.21 gi|284172909|ref|YP_003406290.1| - 5.4e-16 58.6 2.4 5.4e-16 58.6 2.4 1.9 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|284172909|ref|YP_003406290.1| - 5e-07 29.6 6.6 5e-07 29.6 6.6 2.1 2 2 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|284172909|ref|YP_003406290.1| - 0.016 15.7 1.2 0.045 14.3 1.2 1.8 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Phage_integrase PF00589.22 gi|284172911|ref|YP_003406292.1| - 2.6e-17 63.2 0.0 1.1e-16 61.1 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|284172911|ref|YP_003406292.1| - 2.7e-05 24.5 0.1 0.002 18.6 0.0 3.2 3 1 1 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284172911|ref|YP_003406292.1| - 0.00012 22.3 0.1 0.00062 20.0 0.0 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|284172911|ref|YP_003406292.1| - 0.004 17.5 0.0 0.011 16.1 0.0 1.8 1 0 0 1 1 1 1 Phage integrase SAM-like domain TM1506 PF08973.10 gi|284172911|ref|YP_003406292.1| - 0.16 11.7 0.0 0.43 10.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1893) DDE_Tnp_IS240 PF13610.6 gi|284172913|ref|YP_003406294.1| - 2.1e-36 125.3 0.0 3.5e-36 124.5 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|284172913|ref|YP_003406294.1| - 2e-10 40.3 0.4 3.8e-10 39.4 0.4 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|284172913|ref|YP_003406294.1| - 0.00037 20.7 0.3 0.0007 19.8 0.3 1.7 1 1 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|284172913|ref|YP_003406294.1| - 0.0078 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|284172913|ref|YP_003406294.1| - 0.1 12.6 1.2 0.98 9.5 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2384) HTH_24 PF13412.6 gi|284172916|ref|YP_003406297.1| - 1.4e-05 24.5 0.0 2.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|284172916|ref|YP_003406297.1| - 0.00035 20.2 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|284172916|ref|YP_003406297.1| - 0.0014 18.5 0.1 0.0017 18.2 0.1 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|284172916|ref|YP_003406297.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 gi|284172916|ref|YP_003406297.1| - 0.02 14.5 0.1 0.048 13.3 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|284172916|ref|YP_003406297.1| - 0.049 13.6 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|284172916|ref|YP_003406297.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|284172916|ref|YP_003406297.1| - 0.12 12.2 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|284172916|ref|YP_003406297.1| - 0.15 12.4 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PEPCK_ATP PF01293.20 gi|284172917|ref|YP_003406298.1| - 3e-60 204.2 0.0 8.4e-60 202.7 0.0 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase LPD22 PF18834.1 gi|284172917|ref|YP_003406298.1| - 0.036 14.3 0.9 1 9.6 0.0 3.4 2 1 1 3 3 3 0 Large polyvalent protein associated domain 22 SOR_SNZ PF01680.17 gi|284172918|ref|YP_003406299.1| - 1.7e-102 341.5 8.0 2.2e-102 341.1 8.0 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|284172918|ref|YP_003406299.1| - 7.5e-10 38.5 3.4 2.1e-05 23.9 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|284172918|ref|YP_003406299.1| - 0.00029 20.0 0.6 0.22 10.6 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.24 gi|284172918|ref|YP_003406299.1| - 0.02 14.5 0.2 2.5 7.6 0.1 2.4 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|284172918|ref|YP_003406299.1| - 0.079 12.1 0.0 0.87 8.7 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase PALP PF00291.25 gi|284172919|ref|YP_003406300.1| - 6.5e-61 206.3 1.8 7.5e-61 206.1 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ala_racemase_N PF01168.20 gi|284172920|ref|YP_003406301.1| - 3.4e-25 89.0 0.1 5e-25 88.4 0.1 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain D-ser_dehydrat PF14031.6 gi|284172920|ref|YP_003406301.1| - 8.8e-21 74.4 0.0 2.1e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 Putative serine dehydratase domain IclR PF01614.18 gi|284172921|ref|YP_003406302.1| - 1.9e-22 79.5 0.0 2.2e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial transcriptional regulator IclR PF01614.18 gi|284172922|ref|YP_003406303.1| - 1.2e-27 96.3 0.0 3.5e-27 94.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172922|ref|YP_003406303.1| - 4.1e-10 39.3 0.0 8.6e-10 38.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284172922|ref|YP_003406303.1| - 4.6e-06 26.4 0.1 2e-05 24.4 0.0 2.1 3 0 0 3 3 2 1 MarR family MarR PF01047.22 gi|284172922|ref|YP_003406303.1| - 4.6e-05 23.3 0.0 9.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284172922|ref|YP_003406303.1| - 7.7e-05 22.2 0.0 0.00022 20.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172922|ref|YP_003406303.1| - 0.001 18.9 0.0 0.0056 16.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|284172922|ref|YP_003406303.1| - 0.0063 16.5 0.0 0.018 15.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|284172922|ref|YP_003406303.1| - 0.019 15.0 0.1 0.05 13.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|284172922|ref|YP_003406303.1| - 0.022 15.2 0.0 0.067 13.7 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|284172922|ref|YP_003406303.1| - 0.066 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_10 PF04967.12 gi|284172922|ref|YP_003406303.1| - 0.07 12.9 0.0 0.52 10.2 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain B-block_TFIIIC PF04182.12 gi|284172922|ref|YP_003406303.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|284172922|ref|YP_003406303.1| - 0.079 12.9 0.0 0.26 11.2 0.0 2.0 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|284172922|ref|YP_003406303.1| - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PheRS_DBD1 PF18552.1 gi|284172922|ref|YP_003406303.1| - 0.15 11.8 0.0 0.34 10.7 0.0 1.6 1 0 0 1 1 1 0 PheRS DNA binding domain 1 tRNA-synt_2c PF01411.19 gi|284172923|ref|YP_003406304.1| - 1.1e-13 50.6 0.1 1.7e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|284172923|ref|YP_003406304.1| - 1.1e-09 38.2 0.2 2.2e-09 37.3 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain PRP4 PF08799.11 gi|284172923|ref|YP_003406304.1| - 0.033 13.7 0.4 0.078 12.6 0.4 1.6 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like SDF PF00375.18 gi|284172924|ref|YP_003406305.1| - 4.1e-116 388.2 29.2 4.7e-116 388.0 29.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF641 PF04859.12 gi|284172926|ref|YP_003406307.1| - 0.00015 22.1 4.3 0.00025 21.4 3.5 1.8 2 0 0 2 2 1 1 Plant protein of unknown function (DUF641) SPATA24 PF15175.6 gi|284172926|ref|YP_003406307.1| - 0.0025 17.7 2.4 0.0048 16.8 2.4 1.5 1 0 0 1 1 1 1 Spermatogenesis-associated protein 24 DUF1664 PF07889.12 gi|284172926|ref|YP_003406307.1| - 0.0075 16.3 2.4 0.017 15.2 2.4 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|284172926|ref|YP_003406307.1| - 0.012 15.0 6.9 0.026 13.8 6.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.15 gi|284172926|ref|YP_003406307.1| - 0.015 14.9 1.0 0.02 14.4 1.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit FlgN PF05130.12 gi|284172926|ref|YP_003406307.1| - 0.019 15.4 4.7 0.019 15.4 4.7 1.7 2 0 0 2 2 1 0 FlgN protein KIP1 PF07765.12 gi|284172926|ref|YP_003406307.1| - 0.025 14.7 1.4 0.054 13.6 1.4 1.6 1 0 0 1 1 1 0 KIP1-like protein UPF0242 PF06785.11 gi|284172926|ref|YP_003406307.1| - 0.031 14.4 3.5 0.058 13.5 3.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus YkyA PF10368.9 gi|284172926|ref|YP_003406307.1| - 0.038 13.7 5.8 0.066 12.9 5.8 1.4 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF16 PF01519.16 gi|284172926|ref|YP_003406307.1| - 0.042 14.3 3.0 0.11 13.0 3.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF16 MAP65_ASE1 PF03999.12 gi|284172926|ref|YP_003406307.1| - 0.055 12.2 3.4 0.085 11.5 3.4 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) FAM76 PF16046.5 gi|284172926|ref|YP_003406307.1| - 0.058 12.7 2.8 0.1 11.9 2.8 1.3 1 0 0 1 1 1 0 FAM76 protein DUF2570 PF10828.8 gi|284172926|ref|YP_003406307.1| - 0.065 13.1 3.4 0.11 12.3 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) DUF4407 PF14362.6 gi|284172926|ref|YP_003406307.1| - 0.068 12.5 6.3 0.15 11.4 6.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CobN-Mg_chel PF02514.16 gi|284172926|ref|YP_003406307.1| - 0.073 10.8 3.0 0.12 10.1 3.0 1.2 1 0 0 1 1 1 0 CobN/Magnesium Chelatase Golgin_A5 PF09787.9 gi|284172926|ref|YP_003406307.1| - 0.08 12.4 9.0 0.13 11.7 9.0 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 Pox_A_type_inc PF04508.12 gi|284172926|ref|YP_003406307.1| - 0.12 12.3 4.8 2.9 7.9 0.2 2.9 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat HMMR_N PF15905.5 gi|284172926|ref|YP_003406307.1| - 0.13 11.7 8.2 0.23 10.9 8.2 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Fib_alpha PF08702.10 gi|284172926|ref|YP_003406307.1| - 0.15 12.3 2.9 0.33 11.1 2.9 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DASH_Spc19 PF08287.11 gi|284172926|ref|YP_003406307.1| - 0.15 11.9 5.8 0.35 10.7 5.8 1.6 1 0 0 1 1 1 0 Spc19 Spc7 PF08317.11 gi|284172926|ref|YP_003406307.1| - 0.25 10.2 6.9 0.41 9.5 6.9 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein TcdA_TcdB PF12919.7 gi|284172926|ref|YP_003406307.1| - 0.27 10.5 4.2 0.46 9.7 4.2 1.2 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain TMF_DNA_bd PF12329.8 gi|284172926|ref|YP_003406307.1| - 0.38 10.8 8.8 0.81 9.7 8.8 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HalX PF08663.10 gi|284172926|ref|YP_003406307.1| - 0.39 11.1 12.1 1.1 9.6 1.3 2.7 1 1 1 2 2 2 0 HalX domain CorA PF01544.18 gi|284172926|ref|YP_003406307.1| - 0.57 9.4 4.5 0.99 8.7 4.5 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SlyX PF04102.12 gi|284172926|ref|YP_003406307.1| - 0.6 10.8 9.7 2.7 8.7 9.5 2.3 1 1 0 1 1 1 0 SlyX AKNA PF12443.8 gi|284172926|ref|YP_003406307.1| - 0.99 10.1 5.3 30 5.4 3.7 3.0 2 1 1 3 3 3 0 AT-hook-containing transcription factor Csm1_N PF18504.1 gi|284172926|ref|YP_003406307.1| - 1.3 9.4 9.5 11 6.4 3.0 2.7 1 1 1 2 2 2 0 Csm1 N-terminal domain Synaptobrevin PF00957.21 gi|284172926|ref|YP_003406307.1| - 1.5 8.7 3.9 3.1 7.6 3.9 1.4 1 0 0 1 1 1 0 Synaptobrevin ISG65-75 PF11727.8 gi|284172926|ref|YP_003406307.1| - 1.6 7.9 6.0 0.51 9.5 3.3 1.4 2 0 0 2 2 1 0 Invariant surface glycoprotein FemAB PF02388.16 gi|284172926|ref|YP_003406307.1| - 1.8 7.4 4.3 3.8 6.3 3.9 1.6 2 0 0 2 2 2 0 FemAB family Atg14 PF10186.9 gi|284172926|ref|YP_003406307.1| - 2.4 7.2 6.8 0.87 8.6 3.9 1.6 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 XhlA PF10779.9 gi|284172926|ref|YP_003406307.1| - 3.6 7.9 7.4 2.1 8.6 3.6 2.4 1 1 1 2 2 2 0 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|284172926|ref|YP_003406307.1| - 8 6.8 13.6 1 9.7 8.1 2.3 2 1 1 3 3 2 0 ABC transporter C-terminal domain PAP1 PF08601.10 gi|284172927|ref|YP_003406308.1| - 4.8 6.8 11.9 6 6.5 11.9 1.3 1 0 0 1 1 1 0 Transcription factor PAP1 Spc7 PF08317.11 gi|284172928|ref|YP_003406309.1| - 0.00019 20.5 27.2 0.0083 15.0 10.5 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF4407 PF14362.6 gi|284172928|ref|YP_003406309.1| - 0.00056 19.4 15.3 0.00084 18.8 15.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) GAS PF13851.6 gi|284172928|ref|YP_003406309.1| - 0.00063 19.2 12.3 0.00063 19.2 12.3 2.2 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|284172928|ref|YP_003406309.1| - 0.00075 19.7 23.2 0.017 15.4 7.9 2.7 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.12 gi|284172928|ref|YP_003406309.1| - 0.00078 19.5 25.4 0.013 15.5 9.0 2.6 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein SMC_N PF02463.19 gi|284172928|ref|YP_003406309.1| - 0.002 17.6 0.3 0.0029 17.1 0.3 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Fib_alpha PF08702.10 gi|284172928|ref|YP_003406309.1| - 0.0025 18.0 18.1 0.059 13.6 6.2 2.3 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF4201 PF13870.6 gi|284172928|ref|YP_003406309.1| - 0.0034 17.1 18.8 0.02 14.6 10.3 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) IFT57 PF10498.9 gi|284172928|ref|YP_003406309.1| - 0.0038 16.3 6.6 0.0038 16.3 6.6 2.2 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 TMF_TATA_bd PF12325.8 gi|284172928|ref|YP_003406309.1| - 0.0043 17.3 11.5 0.0043 17.3 11.5 3.3 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Prefoldin PF02996.17 gi|284172928|ref|YP_003406309.1| - 0.013 15.4 20.5 0.61 10.0 0.9 4.3 2 2 2 4 4 4 0 Prefoldin subunit DivIC PF04977.15 gi|284172928|ref|YP_003406309.1| - 0.014 15.1 30.5 0.048 13.4 1.8 4.3 1 1 3 4 4 4 0 Septum formation initiator Phage_GP20 PF06810.11 gi|284172928|ref|YP_003406309.1| - 0.016 15.0 18.5 0.027 14.3 8.4 2.9 2 1 1 3 3 2 0 Phage minor structural protein GP20 BLOC1_2 PF10046.9 gi|284172928|ref|YP_003406309.1| - 0.03 14.6 17.0 1.1 9.6 3.4 3.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|284172928|ref|YP_003406309.1| - 0.032 14.7 2.1 0.032 14.7 2.1 3.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|284172928|ref|YP_003406309.1| - 0.045 14.2 13.2 8.3e+02 0.5 12.6 4.0 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.11 gi|284172928|ref|YP_003406309.1| - 0.045 13.8 11.8 0.46 10.6 1.8 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CENP-H PF05837.12 gi|284172928|ref|YP_003406309.1| - 0.082 13.3 22.7 0.14 12.6 2.4 3.2 1 1 0 2 2 2 0 Centromere protein H (CENP-H) bZIP_2 PF07716.15 gi|284172928|ref|YP_003406309.1| - 0.1 12.7 0.1 0.1 12.7 0.1 4.4 3 1 0 4 4 3 0 Basic region leucine zipper Baculo_PEP_C PF04513.12 gi|284172928|ref|YP_003406309.1| - 0.11 12.5 7.5 2.9 7.9 1.4 2.8 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sec8_exocyst PF04048.14 gi|284172928|ref|YP_003406309.1| - 0.13 12.2 5.8 0.08 12.8 1.2 2.6 2 1 0 2 2 2 0 Sec8 exocyst complex component specific domain Golgin_A5 PF09787.9 gi|284172928|ref|YP_003406309.1| - 0.17 11.3 33.7 0.11 11.9 16.9 2.9 1 1 2 3 3 3 0 Golgin subfamily A member 5 APG6_N PF17675.1 gi|284172928|ref|YP_003406309.1| - 0.19 12.3 39.6 1.2 9.6 9.2 3.5 1 1 2 3 3 3 0 Apg6 coiled-coil region BNIP2 PF12496.8 gi|284172928|ref|YP_003406309.1| - 0.22 12.0 14.0 0.46 10.9 14.0 1.6 1 1 0 1 1 1 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 T3SSipB PF16535.5 gi|284172928|ref|YP_003406309.1| - 0.33 11.4 3.3 1 9.8 3.3 1.9 1 1 0 1 1 1 0 Type III cell invasion protein SipB DUF1664 PF07889.12 gi|284172928|ref|YP_003406309.1| - 0.34 10.9 17.1 0.86 9.7 3.6 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF4988 PF16378.5 gi|284172928|ref|YP_003406309.1| - 0.42 10.3 7.6 3.3 7.3 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function MapZ_EC1 PF18041.1 gi|284172928|ref|YP_003406309.1| - 0.42 10.8 5.3 0.69 10.2 0.2 2.9 2 1 1 3 3 3 0 MapZ extracellular domain 1 HemX PF04375.14 gi|284172928|ref|YP_003406309.1| - 0.46 9.7 15.5 0.046 13.0 3.2 2.4 2 1 1 3 3 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase AAA_13 PF13166.6 gi|284172928|ref|YP_003406309.1| - 0.47 9.0 22.8 0.26 9.9 5.6 2.4 2 1 1 3 3 3 0 AAA domain Tweety PF04906.13 gi|284172928|ref|YP_003406309.1| - 0.48 9.0 2.3 9.4 4.8 0.5 2.2 2 0 0 2 2 2 0 Tweety Laminin_II PF06009.12 gi|284172928|ref|YP_003406309.1| - 0.51 10.4 14.6 0.73 9.8 4.5 2.7 1 1 1 2 2 2 0 Laminin Domain II Imm7 PF15585.6 gi|284172928|ref|YP_003406309.1| - 0.56 10.5 4.0 2.9 8.2 3.3 2.4 1 1 1 2 2 2 0 Immunity protein 7 DHR10 PF18595.1 gi|284172928|ref|YP_003406309.1| - 0.63 10.1 32.9 2.4 8.2 12.4 2.8 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain TssO PF17561.2 gi|284172928|ref|YP_003406309.1| - 0.64 10.1 9.8 5.1 7.2 0.3 3.1 1 1 2 3 3 3 0 Type VI secretion system, TssO Nup54 PF13874.6 gi|284172928|ref|YP_003406309.1| - 0.79 9.8 16.0 0.1 12.7 7.7 2.5 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 DUF3450 PF11932.8 gi|284172928|ref|YP_003406309.1| - 0.83 8.9 22.6 8.8 5.5 22.6 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF3584 PF12128.8 gi|284172928|ref|YP_003406309.1| - 0.86 7.0 24.2 1 6.8 24.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FAP206 PF12018.8 gi|284172928|ref|YP_003406309.1| - 0.92 9.0 7.6 5.1 6.5 7.6 2.0 1 1 0 1 1 1 0 Domain of unknown function ABC_tran_CTD PF16326.5 gi|284172928|ref|YP_003406309.1| - 0.94 9.8 33.3 1.7 9.0 8.4 4.0 1 1 2 3 3 3 0 ABC transporter C-terminal domain Occludin_ELL PF07303.13 gi|284172928|ref|YP_003406309.1| - 1 10.1 12.2 2 9.2 4.0 2.9 1 1 2 3 3 3 0 Occludin homology domain Cep57_CLD PF14073.6 gi|284172928|ref|YP_003406309.1| - 1 9.4 21.7 1.8 8.5 21.7 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 DUF1599 PF07659.11 gi|284172928|ref|YP_003406309.1| - 1.2 9.6 4.4 25 5.4 0.8 2.9 2 0 0 2 2 2 0 Nucleotide modification associated domain 1 FadA PF09403.10 gi|284172928|ref|YP_003406309.1| - 1.2 9.6 18.4 0.098 13.1 7.9 2.6 1 1 0 2 2 2 0 Adhesion protein FadA Spc24 PF08286.11 gi|284172928|ref|YP_003406309.1| - 1.6 9.0 28.4 0.4 10.9 3.1 4.2 1 1 3 4 4 4 0 Spc24 subunit of Ndc80 MCPsignal PF00015.21 gi|284172928|ref|YP_003406309.1| - 1.8 8.4 8.9 1.6 8.5 0.6 2.9 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF489 PF04356.12 gi|284172928|ref|YP_003406309.1| - 1.8 8.5 5.0 2.5 8.1 1.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF489) FlaC_arch PF05377.11 gi|284172928|ref|YP_003406309.1| - 2.1 8.8 29.6 0.77 10.2 2.2 4.7 4 1 1 5 5 4 0 Flagella accessory protein C (FlaC) ERM PF00769.19 gi|284172928|ref|YP_003406309.1| - 2.3 7.9 30.0 12 5.7 30.0 1.9 1 1 0 1 1 1 0 Ezrin/radixin/moesin family ACCA PF03255.14 gi|284172928|ref|YP_003406309.1| - 2.4 8.0 18.4 1.3 8.8 1.7 3.3 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KxDL PF10241.9 gi|284172928|ref|YP_003406309.1| - 2.5 8.5 7.1 3.4 8.0 1.5 2.9 2 1 1 3 3 3 0 Uncharacterized conserved protein DUF948 PF06103.11 gi|284172928|ref|YP_003406309.1| - 2.6 8.4 5.4 3.4 8.0 1.3 3.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) HSBP1 PF06825.12 gi|284172928|ref|YP_003406309.1| - 2.7 7.9 16.3 6.3 6.7 0.4 4.0 2 2 0 2 2 2 0 Heat shock factor binding protein 1 Fez1 PF06818.15 gi|284172928|ref|YP_003406309.1| - 3.3 8.1 26.0 4.9 7.5 8.8 2.2 1 1 1 2 2 2 0 Fez1 DUF2203 PF09969.9 gi|284172928|ref|YP_003406309.1| - 3.3 8.5 17.9 0.42 11.3 3.5 2.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Fmp27_WPPW PF10359.9 gi|284172928|ref|YP_003406309.1| - 3.4 6.4 21.9 0.82 8.5 8.0 2.2 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Tex_N PF09371.10 gi|284172928|ref|YP_003406309.1| - 3.8 7.2 17.2 0.92 9.2 4.9 2.5 2 0 0 2 2 2 0 Tex-like protein N-terminal domain RPW8 PF05659.11 gi|284172928|ref|YP_003406309.1| - 3.9 7.2 12.6 1.7 8.3 1.6 3.0 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 bZIP_1 PF00170.21 gi|284172928|ref|YP_003406309.1| - 4.4 7.5 17.7 1.2 9.3 0.1 4.2 2 2 2 4 4 4 0 bZIP transcription factor Snapin_Pallidin PF14712.6 gi|284172928|ref|YP_003406309.1| - 5.3 7.5 17.0 1.2 9.6 5.8 3.3 1 1 2 3 3 3 0 Snapin/Pallidin HlyD_2 PF12700.7 gi|284172928|ref|YP_003406309.1| - 5.4 5.6 16.2 2.1 7.0 10.2 2.0 1 1 1 2 2 2 0 HlyD family secretion protein Atg14 PF10186.9 gi|284172928|ref|YP_003406309.1| - 5.4 6.0 24.1 2 7.4 8.6 2.4 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|284172928|ref|YP_003406309.1| - 5.5 6.5 16.1 68 2.9 16.1 2.3 1 1 1 2 2 2 0 Exonuclease VII, large subunit JIP_LZII PF16471.5 gi|284172928|ref|YP_003406309.1| - 6.4 7.0 25.9 0.32 11.2 2.6 3.8 2 2 1 3 3 3 0 JNK-interacting protein leucine zipper II DUF2959 PF11172.8 gi|284172928|ref|YP_003406309.1| - 7 6.8 18.0 1.7 8.8 1.0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) ATG16 PF08614.11 gi|284172928|ref|YP_003406309.1| - 7.8 6.7 34.3 1.7 8.8 12.1 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) LppA PF16708.5 gi|284172928|ref|YP_003406309.1| - 7.8 6.4 9.1 0.32 10.9 2.1 2.1 2 1 0 2 2 2 0 Lipoprotein confined to pathogenic Mycobacterium Rho_N PF07498.12 gi|284172930|ref|YP_003406311.1| - 0.054 13.4 0.1 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain HalOD1 PF18545.1 gi|284172933|ref|YP_003406314.1| - 2.5e-17 62.9 0.8 3.3e-17 62.5 0.8 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TrmB PF01978.19 gi|284172934|ref|YP_003406315.1| - 2.4e-15 56.2 0.0 7.2e-15 54.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|284172934|ref|YP_003406315.1| - 2.1e-08 33.6 0.0 3e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.7 gi|284172934|ref|YP_003406315.1| - 0.062 13.2 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|284172934|ref|YP_003406315.1| - 0.064 13.8 0.0 0.29 11.7 0.0 2.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain Acyl_transf_3 PF01757.22 gi|284172936|ref|YP_003406317.1| - 0.047 12.8 11.6 0.052 12.6 11.6 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF4349 PF14257.6 gi|284172936|ref|YP_003406317.1| - 0.073 12.5 0.5 0.096 12.1 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) DUF2270 PF10028.9 gi|284172937|ref|YP_003406318.1| - 7.6e-75 250.5 8.1 9.2e-75 250.3 8.1 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) SPC12 PF06645.13 gi|284172937|ref|YP_003406318.1| - 0.024 14.7 2.1 2.2 8.4 0.2 2.5 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DctQ PF04290.12 gi|284172937|ref|YP_003406318.1| - 0.074 13.0 10.3 0.45 10.4 3.5 2.3 2 1 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF485 PF04341.12 gi|284172937|ref|YP_003406318.1| - 0.97 9.4 7.7 0.063 13.2 0.8 2.2 2 1 0 2 2 2 0 Protein of unknown function, DUF485 FA_desaturase PF00487.24 gi|284172937|ref|YP_003406318.1| - 1 9.1 6.6 2.4 7.9 0.6 2.1 1 1 1 2 2 2 0 Fatty acid desaturase FixQ PF05545.11 gi|284172937|ref|YP_003406318.1| - 2.7 8.0 8.3 10 6.1 0.0 3.8 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ AAA_31 PF13614.6 gi|284172939|ref|YP_003406320.1| - 2.8e-28 99.0 0.0 4.8e-28 98.3 0.0 1.4 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|284172939|ref|YP_003406320.1| - 5.5e-14 52.3 0.0 8.6e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|284172939|ref|YP_003406320.1| - 1.4e-12 47.6 0.0 7.4e-11 42.0 0.0 2.1 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284172939|ref|YP_003406320.1| - 1.3e-10 41.2 0.0 2.5e-08 33.7 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|284172939|ref|YP_003406320.1| - 4.7e-07 29.4 0.2 0.0014 17.9 0.2 2.3 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|284172939|ref|YP_003406320.1| - 1.1e-06 28.1 0.1 2.3e-06 27.0 0.1 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|284172939|ref|YP_003406320.1| - 1.8e-05 24.3 0.0 0.0028 17.2 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|284172939|ref|YP_003406320.1| - 0.0047 16.2 0.0 0.057 12.7 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|284172939|ref|YP_003406320.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|284172939|ref|YP_003406320.1| - 0.039 12.9 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|284172939|ref|YP_003406320.1| - 0.082 13.5 0.1 0.69 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|284172939|ref|YP_003406320.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AbiEii PF08843.11 gi|284172940|ref|YP_003406321.1| - 7.8e-40 137.3 0.2 9.5e-40 137.0 0.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system AbiEi_1 PF09407.10 gi|284172941|ref|YP_003406322.1| - 3e-11 43.8 0.1 2.7e-10 40.7 0.0 2.0 2 0 0 2 2 2 1 AbiEi antitoxin C-terminal domain AbiEi_4 PF13338.6 gi|284172941|ref|YP_003406322.1| - 5.6e-08 32.8 0.3 1.9e-07 31.1 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|284172941|ref|YP_003406322.1| - 0.00013 21.8 0.3 0.00044 20.1 0.2 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|284172941|ref|YP_003406322.1| - 0.016 15.0 0.3 0.19 11.5 0.1 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|284172941|ref|YP_003406322.1| - 0.048 14.0 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator AlphaC_C PF17480.2 gi|284172941|ref|YP_003406322.1| - 0.1 12.6 0.0 14 5.8 0.0 2.4 2 0 0 2 2 2 0 AlphaC C-terminal AbiEi_3_N PF17194.4 gi|284172941|ref|YP_003406322.1| - 0.11 12.5 0.0 0.58 10.2 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain HTH_DeoR PF08220.12 gi|284172941|ref|YP_003406322.1| - 0.14 11.9 0.2 1 9.2 0.0 2.2 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain Cdc6_C PF09079.11 gi|284172942|ref|YP_003406323.1| - 1.3e-16 60.3 0.1 3.2e-16 59.1 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284172942|ref|YP_003406323.1| - 7.4e-13 49.0 0.0 2.1e-12 47.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284172942|ref|YP_003406323.1| - 3e-08 34.2 0.7 1e-07 32.5 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|284172942|ref|YP_003406323.1| - 3.1e-05 24.0 0.1 8.3e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|284172942|ref|YP_003406323.1| - 5.4e-05 23.2 0.0 0.00019 21.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|284172942|ref|YP_003406323.1| - 0.00025 20.8 0.0 0.00048 19.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|284172942|ref|YP_003406323.1| - 0.001 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|284172942|ref|YP_003406323.1| - 0.0012 18.6 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|284172942|ref|YP_003406323.1| - 0.0043 16.3 0.0 0.0076 15.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain TniB PF05621.11 gi|284172942|ref|YP_003406323.1| - 0.0047 16.4 0.0 0.0089 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|284172942|ref|YP_003406323.1| - 0.0052 17.2 0.1 0.043 14.2 0.1 2.5 1 1 0 1 1 1 1 RNA helicase AAA_19 PF13245.6 gi|284172942|ref|YP_003406323.1| - 0.0059 16.9 0.0 0.016 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284172942|ref|YP_003406323.1| - 0.034 14.6 0.8 0.16 12.4 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Torsin PF06309.11 gi|284172942|ref|YP_003406323.1| - 0.038 14.1 0.0 0.41 10.8 0.0 2.2 2 0 0 2 2 2 0 Torsin Adeno_IVa2 PF02456.15 gi|284172942|ref|YP_003406323.1| - 0.042 12.6 0.0 0.078 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_7 PF12775.7 gi|284172942|ref|YP_003406323.1| - 0.043 13.3 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|284172942|ref|YP_003406323.1| - 0.046 13.8 0.1 0.22 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|284172942|ref|YP_003406323.1| - 0.075 13.4 0.4 0.25 11.7 0.4 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_32 PF13654.6 gi|284172942|ref|YP_003406323.1| - 0.11 11.2 0.6 4.9 5.8 0.2 2.1 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|284172942|ref|YP_003406323.1| - 0.11 12.4 0.0 0.47 10.4 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Mg_chelatase_C PF13335.6 gi|284172942|ref|YP_003406323.1| - 0.13 12.9 3.1 0.47 11.1 0.9 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal NACHT PF05729.12 gi|284172942|ref|YP_003406323.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PadR PF03551.14 gi|284172944|ref|YP_003406325.1| - 5.1e-17 61.6 0.4 6.6e-17 61.2 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|284172944|ref|YP_003406325.1| - 0.0035 17.8 0.1 0.0045 17.4 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|284172944|ref|YP_003406325.1| - 0.0052 16.6 0.0 0.0082 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 gi|284172944|ref|YP_003406325.1| - 0.015 15.2 0.1 24 4.9 0.0 3.0 3 0 0 3 3 3 0 MarR family HTH_45 PF14947.6 gi|284172944|ref|YP_003406325.1| - 0.022 14.7 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|284172944|ref|YP_003406325.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Octopine_DH PF02317.17 gi|284172946|ref|YP_003406327.1| - 0.014 15.5 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TrmB PF01978.19 gi|284172946|ref|YP_003406327.1| - 0.027 14.3 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|284172946|ref|YP_003406327.1| - 0.029 14.5 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.6 gi|284172948|ref|YP_003406329.1| - 1.9e-07 30.6 0.0 3.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172948|ref|YP_003406329.1| - 0.00092 19.0 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.9 gi|284172948|ref|YP_003406329.1| - 0.0045 17.1 0.0 0.0094 16.0 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|284172948|ref|YP_003406329.1| - 0.012 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|284172948|ref|YP_003406329.1| - 0.029 14.2 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|284172948|ref|YP_003406329.1| - 0.04 13.8 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pneumo_ncap PF03246.13 gi|284172948|ref|YP_003406329.1| - 0.065 12.0 0.0 0.074 11.8 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein HTH_20 PF12840.7 gi|284172948|ref|YP_003406329.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172948|ref|YP_003406329.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Peptidase_M10 PF00413.24 gi|284172949|ref|YP_003406330.1| - 0.042 13.7 3.0 0.041 13.7 3.0 1.1 1 0 0 1 1 1 0 Matrixin HalOD1 PF18545.1 gi|284172950|ref|YP_003406331.1| - 8.4e-19 67.6 0.0 2.9e-18 65.9 0.0 2.0 2 0 0 2 2 2 1 Halobacterial output domain 1 CbiK PF06180.11 gi|284172950|ref|YP_003406331.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) zf-C2H2 PF00096.26 gi|284172951|ref|YP_003406332.1| - 0.016 15.6 0.1 0.022 15.2 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 gi|284172951|ref|YP_003406332.1| - 0.028 14.2 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 C2H2-type zinc-finger domain Zap1_zf2 PF18217.1 gi|284172951|ref|YP_003406332.1| - 0.039 13.9 0.8 0.062 13.3 0.8 1.3 1 0 0 1 1 1 0 Zap1 zinc finger 2 zf_C2H2_ZHX PF18387.1 gi|284172951|ref|YP_003406332.1| - 0.07 12.8 0.2 0.088 12.5 0.2 1.1 1 0 0 1 1 1 0 Zinc-fingers and homeoboxes C2H2 finger domain FOXP-CC PF16159.5 gi|284172951|ref|YP_003406332.1| - 0.36 11.5 0.1 0.36 11.5 0.1 1.3 2 0 0 2 2 2 0 FOXP coiled-coil domain TrmB PF01978.19 gi|284172953|ref|YP_003406334.1| - 6.4e-19 67.6 0.0 1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284172953|ref|YP_003406334.1| - 0.0028 17.5 0.2 0.0087 15.9 0.2 1.8 1 1 0 1 1 1 1 MarR family Regulator_TrmB PF11495.8 gi|284172953|ref|YP_003406334.1| - 0.0064 15.7 0.0 0.0088 15.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284172953|ref|YP_003406334.1| - 0.035 13.9 0.3 0.21 11.4 0.0 2.3 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284172953|ref|YP_003406334.1| - 0.043 14.3 0.0 0.11 13.0 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|284172953|ref|YP_003406334.1| - 0.049 13.8 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|284172953|ref|YP_003406334.1| - 0.17 11.9 0.0 0.76 9.8 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF664 PF04978.12 gi|284172953|ref|YP_003406334.1| - 0.18 12.2 4.4 0.8 10.1 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF664) NicO PF03824.16 gi|284172955|ref|YP_003406336.1| - 1.9e-06 27.4 7.3 3.2e-06 26.7 7.3 1.6 1 1 0 1 1 1 1 High-affinity nickel-transport protein DUF4199 PF13858.6 gi|284172955|ref|YP_003406336.1| - 0.13 12.7 13.8 1.7 9.1 2.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) NikR_C PF08753.11 gi|284172956|ref|YP_003406337.1| - 6.4e-18 64.7 0.3 1.1e-17 64.0 0.3 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|284172956|ref|YP_003406337.1| - 0.0066 16.3 0.2 0.011 15.6 0.2 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family AAA_31 PF13614.6 gi|284172957|ref|YP_003406338.1| - 6.4e-22 78.3 0.0 8.8e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284172957|ref|YP_003406338.1| - 2.9e-12 46.8 0.0 3.5e-12 46.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|284172957|ref|YP_003406338.1| - 6.8e-07 28.8 0.0 2.3e-06 27.0 0.0 2.0 2 1 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|284172957|ref|YP_003406338.1| - 5.5e-06 26.0 0.0 9.7e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284172957|ref|YP_003406338.1| - 4.8e-05 22.9 0.0 0.00012 21.6 0.0 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 gi|284172957|ref|YP_003406338.1| - 0.00011 22.1 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|284172957|ref|YP_003406338.1| - 0.00035 19.9 2.3 0.032 13.5 0.0 2.5 3 0 0 3 3 3 2 ATPase MipZ AAA_24 PF13479.6 gi|284172957|ref|YP_003406338.1| - 0.0064 16.2 0.1 0.014 15.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|284172957|ref|YP_003406338.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF87 PF01935.17 gi|284172957|ref|YP_003406338.1| - 0.01 15.9 0.0 0.03 14.4 0.0 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain SRP54 PF00448.22 gi|284172957|ref|YP_003406338.1| - 0.025 14.2 0.0 0.15 11.6 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|284172957|ref|YP_003406338.1| - 0.05 13.1 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Zeta_toxin PF06414.12 gi|284172957|ref|YP_003406338.1| - 0.072 12.4 0.2 0.25 10.6 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|284172957|ref|YP_003406338.1| - 0.095 12.3 0.6 1.1 8.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 gi|284172957|ref|YP_003406338.1| - 0.1 11.5 0.0 0.25 10.3 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF287 PF03384.14 gi|284172959|ref|YP_003406340.1| - 0.061 13.7 0.8 0.25 11.8 0.2 2.2 2 1 0 2 2 2 0 Drosophila protein of unknown function, DUF287 Peptidase_M78 PF06114.13 gi|284172963|ref|YP_003406344.1| - 0.00033 20.6 0.0 0.00053 19.9 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|284172963|ref|YP_003406344.1| - 0.05 13.4 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 SprT-like family OGG_N PF07934.12 gi|284172963|ref|YP_003406344.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain ACP53EA PF06313.11 gi|284172964|ref|YP_003406345.1| - 0.092 13.0 0.1 0.12 12.6 0.0 1.3 1 1 0 1 1 1 0 Drosophila ACP53EA protein DUF4288 PF14119.6 gi|284172965|ref|YP_003406346.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) zinc_ribbon_15 PF17032.5 gi|284172965|ref|YP_003406346.1| - 5.1 7.9 7.4 18 6.2 0.6 3.0 2 1 1 3 3 3 0 zinc-ribbon family Lar_restr_allev PF14354.6 gi|284172967|ref|YP_003406348.1| - 0.037 14.4 0.2 0.043 14.2 0.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar HalOD1 PF18545.1 gi|284172971|ref|YP_003406352.1| - 1e-15 57.7 0.1 1.2e-15 57.5 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 zf-ribbon_3 PF13248.6 gi|284172972|ref|YP_003406353.1| - 0.0033 16.8 3.5 0.056 12.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|284172972|ref|YP_003406353.1| - 0.0038 17.2 1.2 0.0051 16.8 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon PADR1 PF08063.12 gi|284172972|ref|YP_003406353.1| - 0.0073 16.1 1.0 0.44 10.4 0.1 2.1 2 0 0 2 2 2 1 PADR1 (NUC008) domain Zn-ribbon_8 PF09723.10 gi|284172972|ref|YP_003406353.1| - 0.0078 16.3 2.3 0.014 15.5 2.3 1.5 1 1 0 1 1 1 1 Zinc ribbon domain DUF1610 PF07754.11 gi|284172972|ref|YP_003406353.1| - 0.012 15.6 4.4 0.1 12.6 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.6 gi|284172972|ref|YP_003406353.1| - 0.015 16.0 1.6 0.77 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|284172972|ref|YP_003406353.1| - 0.017 15.2 0.5 0.018 15.1 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|284172972|ref|YP_003406353.1| - 0.025 14.3 3.7 0.72 9.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284172972|ref|YP_003406353.1| - 0.036 14.0 3.0 0.06 13.3 3.0 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|284172972|ref|YP_003406353.1| - 0.054 12.8 1.1 0.075 12.4 1.1 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-RING_7 PF02591.15 gi|284172972|ref|YP_003406353.1| - 0.074 13.2 1.3 2.4 8.4 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF35_N PF12172.8 gi|284172972|ref|YP_003406353.1| - 0.17 11.8 3.5 2.8 7.9 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Arv1 PF04161.13 gi|284172972|ref|YP_003406353.1| - 0.2 11.8 0.7 0.21 11.7 0.7 1.0 1 0 0 1 1 1 0 Arv1-like family HscB_4_cys PF18256.1 gi|284172972|ref|YP_003406353.1| - 0.22 11.4 4.0 9.6 6.1 4.0 2.3 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif PhnA_Zn_Ribbon PF08274.12 gi|284172972|ref|YP_003406353.1| - 0.3 11.1 3.6 1.7 8.6 3.6 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|284172972|ref|YP_003406353.1| - 0.36 10.4 3.2 6.5 6.4 0.3 2.1 1 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|284172972|ref|YP_003406353.1| - 0.53 10.3 5.1 1.3 9.0 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|284172972|ref|YP_003406353.1| - 0.55 10.0 4.6 4.5 7.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-LITAF-like PF10601.9 gi|284172972|ref|YP_003406353.1| - 0.65 10.3 4.6 4.3 7.7 0.5 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain PyrI_C PF02748.15 gi|284172974|ref|YP_003406355.1| - 0.086 12.8 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF4908 PF16252.5 gi|284172974|ref|YP_003406355.1| - 0.11 12.0 0.2 0.13 11.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4908) Zn-C2H2_12 PF18112.1 gi|284172975|ref|YP_003406356.1| - 0.019 15.4 2.0 1.4 9.4 0.0 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain C1_1 PF00130.22 gi|284172975|ref|YP_003406356.1| - 0.028 14.3 1.9 0.04 13.8 1.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Mu-like_Com PF10122.9 gi|284172975|ref|YP_003406356.1| - 0.03 13.8 1.2 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 Mu-like prophage protein Com Lar_restr_allev PF14354.6 gi|284172975|ref|YP_003406356.1| - 0.034 14.5 0.9 0.034 14.5 0.9 1.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF2318 PF10080.9 gi|284172975|ref|YP_003406356.1| - 0.042 14.0 0.4 0.052 13.7 0.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-RRN7 PF11781.8 gi|284172975|ref|YP_003406356.1| - 0.16 11.7 0.3 0.16 11.7 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Polysacc_lyase PF14099.6 gi|284172976|ref|YP_003406357.1| - 0.12 12.2 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide lyase TehB PF03848.14 gi|284172979|ref|YP_003406360.1| - 1.1e-17 64.0 0.0 1.4e-17 63.8 0.0 1.0 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_25 PF13649.6 gi|284172979|ref|YP_003406360.1| - 8.3e-14 52.1 0.0 1.6e-13 51.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284172979|ref|YP_003406360.1| - 1.1e-11 45.2 0.0 1.8e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284172979|ref|YP_003406360.1| - 1.8e-09 37.7 0.0 3.2e-09 36.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284172979|ref|YP_003406360.1| - 2e-08 34.8 0.0 3.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|284172979|ref|YP_003406360.1| - 8.4e-07 28.5 0.0 1e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|284172979|ref|YP_003406360.1| - 1.6e-06 28.0 0.0 1.8e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|284172979|ref|YP_003406360.1| - 0.00026 20.7 0.0 0.00045 20.0 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|284172979|ref|YP_003406360.1| - 0.0011 18.5 0.1 0.0016 18.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|284172979|ref|YP_003406360.1| - 0.0015 18.6 0.0 0.0018 18.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|284172979|ref|YP_003406360.1| - 0.0032 16.9 0.0 0.0047 16.4 0.0 1.3 1 1 0 1 1 1 1 Putative SAM-dependent methyltransferase Met_10 PF02475.16 gi|284172979|ref|YP_003406360.1| - 0.0035 17.1 0.1 0.0045 16.8 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|284172979|ref|YP_003406360.1| - 0.0042 17.0 0.0 0.0059 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 gi|284172979|ref|YP_003406360.1| - 0.032 13.4 0.0 0.039 13.1 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent PEPcase_2 PF14010.6 gi|284172979|ref|YP_003406360.1| - 0.057 11.9 0.1 0.095 11.2 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase Methyltransf_15 PF09445.10 gi|284172979|ref|YP_003406360.1| - 0.061 12.9 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|284172979|ref|YP_003406360.1| - 0.099 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|284172979|ref|YP_003406360.1| - 0.1 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF1428 PF07237.11 gi|284172980|ref|YP_003406361.1| - 1.1e-36 125.1 0.5 1.3e-36 124.9 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) NIPSNAP PF07978.13 gi|284172980|ref|YP_003406361.1| - 0.12 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 NIPSNAP SWIM PF04434.17 gi|284172981|ref|YP_003406362.1| - 4.3e-06 26.3 0.3 6.1e-06 25.8 0.3 1.3 1 0 0 1 1 1 1 SWIM zinc finger TF_Zn_Ribbon PF08271.12 gi|284172982|ref|YP_003406363.1| - 0.028 13.9 2.0 0.48 10.0 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PemK_toxin PF02452.17 gi|284172983|ref|YP_003406364.1| - 8.2e-32 109.9 0.1 9e-32 109.8 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system eIF-1a PF01176.19 gi|284172983|ref|YP_003406364.1| - 0.13 12.1 0.4 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 MazE_antitoxin PF04014.18 gi|284172984|ref|YP_003406365.1| - 3.1e-10 39.7 1.8 3.9e-10 39.4 1.8 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|284172984|ref|YP_003406365.1| - 0.014 15.8 0.0 0.019 15.4 0.0 1.3 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin DDE_Tnp_IS240 PF13610.6 gi|284172987|ref|YP_003406368.1| - 1.3e-16 61.1 0.1 2e-16 60.5 0.1 1.3 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|284172987|ref|YP_003406368.1| - 0.0026 17.3 0.3 0.0059 16.1 0.3 1.6 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.26 gi|284172987|ref|YP_003406368.1| - 0.0032 17.6 0.1 0.0066 16.6 0.1 1.7 1 1 0 1 1 1 1 Integrase core domain Pico_P2B PF01552.17 gi|284172987|ref|YP_003406368.1| - 0.11 12.6 0.1 4.5 7.5 0.0 2.5 2 1 0 2 2 2 0 Picornavirus 2B protein MFS_1 PF07690.16 gi|284172988|ref|YP_003406369.1| - 1.4e-35 122.8 55.3 2.9e-27 95.5 31.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily GMC_oxred_N PF00732.19 gi|284172989|ref|YP_003406370.1| - 8.7e-90 301.1 0.0 1.1e-89 300.7 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 gi|284172989|ref|YP_003406370.1| - 1.1e-43 149.2 0.1 1.8e-43 148.5 0.1 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|284172989|ref|YP_003406370.1| - 2.6e-05 23.5 0.2 0.03 13.4 0.0 2.6 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|284172989|ref|YP_003406370.1| - 0.0001 21.5 0.1 0.00027 20.1 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|284172989|ref|YP_003406370.1| - 0.00019 21.1 0.1 0.021 14.4 0.0 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284172989|ref|YP_003406370.1| - 0.001 19.2 0.9 0.0034 17.6 0.0 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284172989|ref|YP_003406370.1| - 0.0013 18.1 0.0 0.041 13.1 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172989|ref|YP_003406370.1| - 0.0097 15.2 0.0 4.2 6.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284172989|ref|YP_003406370.1| - 0.08 11.6 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.17 gi|284172989|ref|YP_003406370.1| - 0.1 11.8 0.1 0.19 10.9 0.1 1.5 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.16 gi|284172989|ref|YP_003406370.1| - 0.14 11.8 0.1 0.79 9.4 0.0 2.2 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA Alkyl_sulf_dimr PF14863.6 gi|284172990|ref|YP_003406371.1| - 1.8e-29 103.0 0.0 5.5e-29 101.4 0.1 1.7 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|284172990|ref|YP_003406371.1| - 5.8e-20 72.1 5.0 1.7e-19 70.7 2.9 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284172990|ref|YP_003406371.1| - 0.0012 18.4 0.1 0.0025 17.4 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HTH_10 PF04967.12 gi|284172991|ref|YP_003406372.1| - 5.2e-13 48.6 0.0 9.2e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284172991|ref|YP_003406372.1| - 0.0068 16.1 0.2 0.13 12.0 0.2 2.6 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284172991|ref|YP_003406372.1| - 0.017 14.6 0.1 0.042 13.4 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2774 PF11242.8 gi|284172991|ref|YP_003406372.1| - 0.085 13.1 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) SgrR_N PF12793.7 gi|284172991|ref|YP_003406372.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DDE_Tnp_IS240 PF13610.6 gi|284172992|ref|YP_003406373.1| - 4.5e-38 130.6 0.0 6.9e-38 130.0 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|284172992|ref|YP_003406373.1| - 1.6e-10 40.6 0.6 3.1e-10 39.7 0.6 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|284172992|ref|YP_003406373.1| - 0.00017 21.8 0.1 0.00032 20.9 0.1 1.7 1 1 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|284172992|ref|YP_003406373.1| - 0.001 19.2 0.1 0.0019 18.3 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|284172992|ref|YP_003406373.1| - 0.15 12.1 0.7 0.98 9.5 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2384) PadR PF03551.14 gi|284172993|ref|YP_003406374.1| - 4.7e-12 45.7 0.2 5.7e-12 45.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284172993|ref|YP_003406374.1| - 0.063 13.3 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DiS_P_DiS PF06750.13 gi|284172994|ref|YP_003406375.1| - 0.11 12.6 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Leucyl-specific PF14795.6 gi|284172995|ref|YP_003406376.1| - 0.055 13.5 0.2 0.94 9.6 0.0 2.9 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain tRNA_anti_2 PF13742.6 gi|284172995|ref|YP_003406376.1| - 0.073 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HATPase_c PF02518.26 gi|284172996|ref|YP_003406377.1| - 2.4e-31 108.5 0.1 5.8e-30 104.1 0.0 2.2 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284172996|ref|YP_003406377.1| - 6.6e-13 48.5 0.8 5.7e-12 45.5 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284172996|ref|YP_003406377.1| - 3.6e-07 30.4 0.1 1.1e-06 28.9 0.1 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|284172996|ref|YP_003406377.1| - 5.9e-07 29.3 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 gi|284172996|ref|YP_003406377.1| - 3.3e-05 24.1 0.0 0.00021 21.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|284172996|ref|YP_003406377.1| - 0.00045 20.1 0.0 0.00095 19.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|284172996|ref|YP_003406377.1| - 0.00059 19.8 0.1 0.0033 17.4 0.0 2.3 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|284172996|ref|YP_003406377.1| - 0.0026 17.7 0.0 0.0054 16.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|284172996|ref|YP_003406377.1| - 0.021 15.4 0.0 0.046 14.3 0.0 1.6 1 0 0 1 1 1 0 PAS domain DUF4922 PF16269.5 gi|284172996|ref|YP_003406377.1| - 0.066 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4922) OrfB_Zn_ribbon PF07282.11 gi|284172997|ref|YP_003406378.1| - 0.0037 17.2 0.4 0.0069 16.3 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|284172997|ref|YP_003406378.1| - 0.057 13.5 1.2 8.6 6.6 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|284172997|ref|YP_003406378.1| - 0.12 12.2 0.5 0.12 12.2 0.5 2.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|284172997|ref|YP_003406378.1| - 0.13 12.3 2.6 0.3 11.2 2.2 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_C2H2_10 PF18414.1 gi|284172997|ref|YP_003406378.1| - 2.2 7.9 4.9 22 4.7 0.1 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF3797 PF12677.7 gi|284172997|ref|YP_003406378.1| - 4 7.4 7.5 2.3 8.2 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) RNA_POL_M_15KD PF02150.16 gi|284172997|ref|YP_003406378.1| - 7.3 6.6 6.8 0.78 9.7 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Hexapep PF00132.24 gi|284173000|ref|YP_003406381.1| - 9.9e-13 47.3 9.9 2.7e-07 30.0 2.2 2.5 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|284173000|ref|YP_003406381.1| - 7.2e-08 32.8 0.0 1.3e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|284173000|ref|YP_003406381.1| - 0.00025 20.7 1.5 0.00025 20.7 1.5 2.8 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SDA1 PF05285.12 gi|284173002|ref|YP_003406383.1| - 0.36 10.2 26.6 0.48 9.8 26.6 1.2 1 0 0 1 1 1 0 SDA1 SLC12 PF03522.15 gi|284173002|ref|YP_003406383.1| - 0.42 9.6 1.0 0.56 9.2 1.0 1.1 1 0 0 1 1 1 0 Solute carrier family 12 Presenilin PF01080.17 gi|284173002|ref|YP_003406383.1| - 4.3 6.0 4.4 5.4 5.7 4.4 1.1 1 0 0 1 1 1 0 Presenilin Nop14 PF04147.12 gi|284173002|ref|YP_003406383.1| - 9.1 4.3 27.6 12 4.0 27.6 1.1 1 0 0 1 1 1 0 Nop14-like family Bromodomain PF00439.25 gi|284173003|ref|YP_003406384.1| - 0.22 11.6 0.1 0.37 10.9 0.1 1.3 1 0 0 1 1 1 0 Bromodomain GCS2 PF04107.13 gi|284173005|ref|YP_003406386.1| - 4.1e-11 42.8 1.1 8.1e-11 41.8 0.2 1.9 2 1 0 2 2 2 1 Glutamate-cysteine ligase family 2(GCS2) tRNA_anti-codon PF01336.25 gi|284173007|ref|YP_003406388.1| - 0.00037 20.4 0.0 0.00051 20.0 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Cation_efflux PF01545.21 gi|284173008|ref|YP_003406389.1| - 4.5e-38 131.0 13.2 5.4e-38 130.7 13.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|284173008|ref|YP_003406389.1| - 0.0011 19.0 2.1 0.0017 18.5 2.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF3954 PF13128.6 gi|284173008|ref|YP_003406389.1| - 0.0049 16.7 0.7 0.017 14.9 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3954) Zn-ribbon_8 PF09723.10 gi|284173009|ref|YP_003406390.1| - 0.017 15.3 4.1 0.54 10.4 1.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-DNL PF05180.12 gi|284173009|ref|YP_003406390.1| - 0.078 12.9 0.1 12 5.9 0.1 2.2 2 0 0 2 2 2 0 DNL zinc finger zinc_ribbon_9 PF14369.6 gi|284173009|ref|YP_003406390.1| - 0.08 13.2 0.6 4.2 7.7 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon Zn_ribbon_SprT PF17283.2 gi|284173009|ref|YP_003406390.1| - 0.15 12.0 4.2 0.6 10.1 0.4 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Nop14 PF04147.12 gi|284173009|ref|YP_003406390.1| - 0.3 9.3 7.7 0.32 9.1 7.7 1.1 1 0 0 1 1 1 0 Nop14-like family zf-C2H2_4 PF13894.6 gi|284173009|ref|YP_003406390.1| - 1.2 10.2 3.0 16 6.6 0.2 2.6 2 1 0 2 2 2 0 C2H2-type zinc finger CDC45 PF02724.14 gi|284173009|ref|YP_003406390.1| - 2.9 6.1 6.6 2.7 6.2 6.6 1.1 1 0 0 1 1 1 0 CDC45-like protein TFIIS_C PF01096.18 gi|284173009|ref|YP_003406390.1| - 6.5 6.7 9.3 5.9 6.8 0.4 2.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) HalOD1 PF18545.1 gi|284173010|ref|YP_003406391.1| - 5.1e-14 52.3 0.0 5.5e-14 52.2 0.0 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 CorC_HlyC PF03471.17 gi|284173010|ref|YP_003406391.1| - 0.075 13.1 0.0 0.083 12.9 0.0 1.1 1 0 0 1 1 1 0 Transporter associated domain HalOD1 PF18545.1 gi|284173011|ref|YP_003406392.1| - 3.9e-21 75.1 0.1 5.8e-21 74.5 0.1 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 ACP_syn_III PF08545.10 gi|284173011|ref|YP_003406392.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DNA_primase_S PF01896.19 gi|284173014|ref|YP_003406395.1| - 0.00096 19.2 0.0 0.069 13.2 0.0 2.2 1 1 1 2 2 2 2 DNA primase small subunit Chlamy_scaf PF09675.10 gi|284173014|ref|YP_003406395.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Chlamydia-phage Chp2 scaffold (Chlamy_scaf) TrwB_AAD_bind PF10412.9 gi|284173015|ref|YP_003406396.1| - 1.5e-07 30.7 0.0 2.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|284173015|ref|YP_003406396.1| - 4.3e-07 30.3 0.0 1.2e-06 28.8 0.0 1.8 1 0 0 1 1 1 1 Helicase HerA, central domain bPH_2 PF03703.14 gi|284173015|ref|YP_003406396.1| - 1.9e-05 24.8 0.0 4.1e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial PH domain FtsK_SpoIIIE PF01580.18 gi|284173015|ref|YP_003406396.1| - 0.0023 17.3 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family TraG-D_C PF12696.7 gi|284173015|ref|YP_003406396.1| - 0.005 16.8 0.2 0.02 14.9 0.0 2.1 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG RNA_helicase PF00910.22 gi|284173015|ref|YP_003406396.1| - 0.022 15.1 0.0 0.064 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|284173015|ref|YP_003406396.1| - 0.1 12.2 0.2 2.4 7.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain Peptidase_M17 PF00883.21 gi|284173015|ref|YP_003406396.1| - 0.12 11.6 0.1 0.2 10.9 0.1 1.2 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain AAA_7 PF12775.7 gi|284173015|ref|YP_003406396.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF853 PF05872.12 gi|284173015|ref|YP_003406396.1| - 0.14 10.8 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|284173016|ref|YP_003406397.1| - 3.3e-08 33.9 0.1 2.3e-07 31.1 0.0 2.4 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|284173016|ref|YP_003406397.1| - 2e-05 23.7 0.1 0.0093 14.9 0.1 2.3 2 0 0 2 2 2 2 AAA-like domain DUF4332 PF14229.6 gi|284173016|ref|YP_003406397.1| - 6.9e-05 23.1 0.1 0.0027 17.9 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH_5 PF14520.6 gi|284173016|ref|YP_003406397.1| - 0.00021 21.8 0.1 0.00021 21.8 0.1 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain NTP_transf_5 PF14907.6 gi|284173016|ref|YP_003406397.1| - 0.0068 16.1 0.4 0.017 14.8 0.4 1.6 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase CagE_TrbE_VirB PF03135.14 gi|284173016|ref|YP_003406397.1| - 0.03 14.4 0.0 0.11 12.6 0.0 1.8 1 1 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system DNA_pol_lambd_f PF10391.9 gi|284173016|ref|YP_003406397.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda CCDC53 PF10152.9 gi|284173016|ref|YP_003406397.1| - 0.11 12.9 5.0 0.046 14.1 1.8 2.0 2 0 0 2 2 2 0 Subunit CCDC53 of WASH complex AAA PF00004.29 gi|284173019|ref|YP_003406400.1| - 1.5e-37 128.9 0.0 3.5e-37 127.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284173019|ref|YP_003406400.1| - 3.4e-08 33.2 0.7 8.9e-08 31.8 0.7 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 gi|284173019|ref|YP_003406400.1| - 1.4e-07 32.0 4.2 4.1e-06 27.3 4.2 2.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|284173019|ref|YP_003406400.1| - 2.7e-06 27.4 0.0 8.2e-06 25.9 0.0 1.9 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|284173019|ref|YP_003406400.1| - 2.7e-06 27.2 0.0 9.3e-06 25.5 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|284173019|ref|YP_003406400.1| - 3.7e-05 23.9 0.5 0.00024 21.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|284173019|ref|YP_003406400.1| - 0.00029 21.1 1.0 0.21 11.9 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|284173019|ref|YP_003406400.1| - 0.00029 20.9 0.0 0.00057 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|284173019|ref|YP_003406400.1| - 0.00048 19.4 0.0 0.0016 17.7 0.0 1.7 1 1 1 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|284173019|ref|YP_003406400.1| - 0.00063 19.0 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|284173019|ref|YP_003406400.1| - 0.002 18.5 0.0 0.004 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|284173019|ref|YP_003406400.1| - 0.0037 17.0 0.0 0.014 15.2 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|284173019|ref|YP_003406400.1| - 0.0038 17.0 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|284173019|ref|YP_003406400.1| - 0.0045 16.7 0.0 0.19 11.4 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|284173019|ref|YP_003406400.1| - 0.0087 16.6 0.0 0.017 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|284173019|ref|YP_003406400.1| - 0.011 15.7 0.1 0.18 11.7 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|284173019|ref|YP_003406400.1| - 0.012 15.2 1.1 2 8.0 0.0 2.4 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|284173019|ref|YP_003406400.1| - 0.013 15.7 0.0 0.044 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|284173019|ref|YP_003406400.1| - 0.014 14.8 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|284173019|ref|YP_003406400.1| - 0.018 14.1 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|284173019|ref|YP_003406400.1| - 0.024 14.6 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|284173019|ref|YP_003406400.1| - 0.025 15.1 0.0 0.057 13.9 0.0 1.7 2 1 0 2 2 1 0 ABC transporter AAA_17 PF13207.6 gi|284173019|ref|YP_003406400.1| - 0.029 14.8 2.2 0.031 14.7 0.1 2.3 2 1 1 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|284173019|ref|YP_003406400.1| - 0.036 14.3 0.7 0.098 12.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|284173019|ref|YP_003406400.1| - 0.052 12.9 0.0 1.3 8.4 0.0 2.4 2 0 0 2 2 2 0 KaiC AAA_11 PF13086.6 gi|284173019|ref|YP_003406400.1| - 0.074 12.8 0.6 0.21 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|284173019|ref|YP_003406400.1| - 0.11 12.0 0.1 0.67 9.4 0.1 2.1 1 1 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|284173019|ref|YP_003406400.1| - 0.21 11.5 0.1 5.1 6.9 0.1 2.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea TrbC PF04956.13 gi|284173022|ref|YP_003406403.1| - 6.8e-05 23.0 5.5 7.6e-05 22.9 5.5 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family Tetraspanin PF00335.20 gi|284173022|ref|YP_003406403.1| - 0.093 12.4 1.0 0.12 12.1 1.0 1.3 1 0 0 1 1 1 0 Tetraspanin family NVEALA PF14055.6 gi|284173022|ref|YP_003406403.1| - 0.11 12.4 0.9 0.43 10.6 0.2 2.0 2 0 0 2 2 2 0 NVEALA protein HNH PF01844.23 gi|284173023|ref|YP_003406404.1| - 1.8e-11 44.0 6.0 2.7e-11 43.4 6.0 1.3 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|284173023|ref|YP_003406404.1| - 1.4e-07 31.3 2.9 6.3e-07 29.2 2.8 1.8 1 1 1 2 2 2 1 HNH endonuclease Sortilin-Vps10 PF15902.5 gi|284173024|ref|YP_003406405.1| - 6.5e-15 54.9 0.0 5e-07 28.9 0.0 2.3 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|284173024|ref|YP_003406405.1| - 4.9e-11 40.9 17.4 0.014 15.3 0.1 6.3 6 0 0 6 6 6 4 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|284173024|ref|YP_003406405.1| - 2.5e-06 27.0 2.7 0.059 12.6 0.1 3.1 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR_6 PF15899.5 gi|284173024|ref|YP_003406405.1| - 4.8e-05 23.0 0.1 1.2 9.4 0.0 4.6 4 0 0 4 4 4 1 BNR-Asp box repeat BNR_2 PF13088.6 gi|284173024|ref|YP_003406405.1| - 0.0021 17.4 4.9 1.5 8.0 0.2 4.5 1 1 2 4 4 4 1 BNR repeat-like domain DUF4185 PF13810.6 gi|284173024|ref|YP_003406405.1| - 0.0025 17.1 3.8 9.3 5.4 0.9 3.8 2 2 1 3 3 3 3 Domain of unknown function (DUF4185) MqsR_toxin PF15723.5 gi|284173024|ref|YP_003406405.1| - 0.24 11.8 0.0 0.82 10.1 0.0 1.8 2 0 0 2 2 2 0 Motility quorum-sensing regulator, toxin of MqsA PQQ_3 PF13570.6 gi|284173024|ref|YP_003406405.1| - 0.53 10.9 4.4 34 5.1 0.1 4.1 4 0 0 4 4 4 0 PQQ-like domain BNR_3 PF13859.6 gi|284173024|ref|YP_003406405.1| - 0.57 9.4 2.3 69 2.6 0.0 3.5 4 0 0 4 4 4 0 BNR repeat-like domain Mo-co_dimer PF03404.16 gi|284173024|ref|YP_003406405.1| - 1.6 8.8 5.0 22 5.0 0.3 3.4 2 2 2 4 4 4 0 Mo-co oxidoreductase dimerisation domain Gram_pos_anchor PF00746.21 gi|284173028|ref|YP_003406409.1| - 0.099 12.6 0.2 0.099 12.6 0.2 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif SAPS PF04499.15 gi|284173028|ref|YP_003406409.1| - 0.86 8.3 12.8 1.2 7.8 12.8 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein AstE_AspA PF04952.14 gi|284173029|ref|YP_003406410.1| - 6.4e-15 55.0 0.0 1.2e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|284173029|ref|YP_003406410.1| - 9.3e-05 22.4 0.1 0.024 14.4 0.0 2.3 2 0 0 2 2 2 2 Zinc carboxypeptidase Peptidase_M99 PF17033.5 gi|284173029|ref|YP_003406410.1| - 0.0002 20.9 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic DUF2119 PF09892.9 gi|284173029|ref|YP_003406410.1| - 0.065 12.6 0.0 0.28 10.6 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) SIS PF01380.22 gi|284176135|ref|YP_003406412.1| - 5.5e-51 171.8 0.2 6.3e-25 87.5 0.5 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|284176135|ref|YP_003406412.1| - 2.3e-21 76.4 0.5 6.3e-21 75.0 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|284176135|ref|YP_003406412.1| - 1.8e-17 63.4 0.0 3.5e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|284176135|ref|YP_003406412.1| - 0.00095 18.1 0.0 0.0015 17.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|284176135|ref|YP_003406412.1| - 0.0074 16.3 0.1 1.5 8.8 0.1 2.4 2 0 0 2 2 2 2 SIS domain NTP_transferase PF00483.23 gi|284176136|ref|YP_003406413.1| - 7.7e-38 130.5 0.0 1.2e-37 129.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|284176136|ref|YP_003406413.1| - 6.1e-17 62.4 0.4 6.1e-17 62.4 0.4 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|284176136|ref|YP_003406413.1| - 6e-09 35.3 13.7 0.047 13.4 0.2 5.5 5 1 1 6 6 6 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|284176136|ref|YP_003406413.1| - 1.6e-05 24.8 0.0 2.5e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|284176136|ref|YP_003406413.1| - 0.12 10.4 0.3 0.19 9.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Zn-ribbon_8 PF09723.10 gi|284176137|ref|YP_003406414.1| - 0.012 15.7 2.7 0.073 13.2 2.4 2.0 1 1 1 2 2 2 0 Zinc ribbon domain DUF3268 PF11672.8 gi|284176137|ref|YP_003406414.1| - 0.034 14.5 0.2 0.04 14.3 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain RecR PF02132.15 gi|284176137|ref|YP_003406414.1| - 0.036 13.6 0.9 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 RecR protein zf-LITAF-like PF10601.9 gi|284176137|ref|YP_003406414.1| - 0.052 13.8 3.1 0.69 10.2 0.2 2.1 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Vps36-NZF-N PF16988.5 gi|284176137|ref|YP_003406414.1| - 0.064 12.7 0.3 0.064 12.7 0.3 1.6 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Zn_ribbon_SprT PF17283.2 gi|284176137|ref|YP_003406414.1| - 0.094 12.6 5.1 0.35 10.8 0.4 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|284176137|ref|YP_003406414.1| - 0.12 12.2 2.6 1.4 8.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|284176137|ref|YP_003406414.1| - 0.17 11.4 3.0 0.63 9.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|284176137|ref|YP_003406414.1| - 0.17 11.9 3.7 0.34 10.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) MarR_2 PF12802.7 gi|284176138|ref|YP_003406415.1| - 4.2e-06 26.5 0.1 5e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284176138|ref|YP_003406415.1| - 4.3e-06 26.6 0.0 5.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284176138|ref|YP_003406415.1| - 1.1e-05 24.8 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284176138|ref|YP_003406415.1| - 0.00011 22.2 0.1 0.00014 21.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284176138|ref|YP_003406415.1| - 0.00048 20.1 0.0 0.00056 19.8 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|284176138|ref|YP_003406415.1| - 0.00048 20.0 0.0 0.00056 19.7 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|284176138|ref|YP_003406415.1| - 0.00066 19.5 0.1 0.00079 19.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|284176138|ref|YP_003406415.1| - 0.00083 19.0 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|284176138|ref|YP_003406415.1| - 0.0057 17.0 0.0 0.0078 16.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|284176138|ref|YP_003406415.1| - 0.0063 16.4 0.0 0.0093 15.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|284176138|ref|YP_003406415.1| - 0.0072 16.3 0.0 0.053 13.5 0.0 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_54 PF18607.1 gi|284176138|ref|YP_003406415.1| - 0.014 15.5 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_12 PF08461.10 gi|284176138|ref|YP_003406415.1| - 0.024 14.6 0.1 0.038 13.9 0.1 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_CodY PF08222.11 gi|284176138|ref|YP_003406415.1| - 0.052 13.1 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF742 PF05331.11 gi|284176138|ref|YP_003406415.1| - 0.055 13.3 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DprA_WH PF17782.1 gi|284176138|ref|YP_003406415.1| - 0.06 13.5 0.1 0.089 12.9 0.1 1.4 1 1 0 1 1 1 0 DprA winged helix domain HTH_27 PF13463.6 gi|284176138|ref|YP_003406415.1| - 0.062 13.8 0.1 0.079 13.5 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|284176138|ref|YP_003406415.1| - 0.08 13.1 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|284176138|ref|YP_003406415.1| - 0.13 12.5 0.1 0.18 12.1 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_DeoR PF08220.12 gi|284176138|ref|YP_003406415.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Acetyltransf_6 PF13480.7 gi|284176139|ref|YP_003406416.1| - 1.6e-20 73.7 0.1 1.6e-20 73.7 0.1 2.0 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|284176139|ref|YP_003406416.1| - 1.2e-05 24.4 0.0 0.0016 17.4 0.0 2.1 2 0 0 2 2 2 2 FemAB family Phosphodiest PF01663.22 gi|284176140|ref|YP_003406417.1| - 4.1e-40 138.5 0.1 4.6e-38 131.7 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DegT_DnrJ_EryC1 PF01041.17 gi|284176141|ref|YP_003406418.1| - 1e-13 51.3 0.0 1.1e-12 47.9 0.0 2.0 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family HEPN_SAV_6107 PF18726.1 gi|284176141|ref|YP_003406418.1| - 0.019 15.4 2.4 1.4 9.5 2.3 2.8 2 0 0 2 2 2 0 SAV_6107-like HEPN Cas3_C PF18395.1 gi|284176141|ref|YP_003406418.1| - 0.15 12.6 1.0 1.4 9.4 0.3 2.3 2 0 0 2 2 2 0 Cas3 C-terminal domain DUF87 PF01935.17 gi|284176142|ref|YP_003406419.1| - 8.5e-11 42.4 10.5 4.6e-09 36.7 10.5 2.9 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|284176142|ref|YP_003406419.1| - 7.3e-06 24.8 1.6 0.00023 19.9 0.0 2.7 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) FlaC_arch PF05377.11 gi|284176142|ref|YP_003406419.1| - 0.00018 21.8 18.0 0.014 15.8 2.2 3.6 2 1 1 3 3 3 2 Flagella accessory protein C (FlaC) MscS_porin PF12795.7 gi|284176142|ref|YP_003406419.1| - 0.00038 20.1 16.1 0.00075 19.1 16.1 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain CbiA PF01656.23 gi|284176142|ref|YP_003406419.1| - 0.0014 18.6 0.0 0.0027 17.8 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CENP-F_leu_zip PF10473.9 gi|284176142|ref|YP_003406419.1| - 0.0028 17.7 32.3 0.094 12.7 32.3 2.6 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_16 PF13191.6 gi|284176142|ref|YP_003406419.1| - 0.0036 17.7 0.0 0.0036 17.7 0.0 3.3 2 1 0 2 2 1 1 AAA ATPase domain SlyX PF04102.12 gi|284176142|ref|YP_003406419.1| - 0.0045 17.6 19.8 0.069 13.8 6.8 3.4 1 1 2 3 3 3 1 SlyX BRE1 PF08647.11 gi|284176142|ref|YP_003406419.1| - 0.0045 17.0 13.7 0.014 15.5 0.8 2.5 2 0 0 2 2 2 1 BRE1 E3 ubiquitin ligase APS_kinase PF01583.20 gi|284176142|ref|YP_003406419.1| - 0.0056 16.6 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 1 1 Adenylylsulphate kinase ABC_tran_CTD PF16326.5 gi|284176142|ref|YP_003406419.1| - 0.0065 16.7 8.7 0.0065 16.7 8.7 3.1 2 0 0 2 2 2 1 ABC transporter C-terminal domain AAA PF00004.29 gi|284176142|ref|YP_003406419.1| - 0.014 15.9 0.4 0.18 12.2 0.0 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Med9 PF07544.13 gi|284176142|ref|YP_003406419.1| - 0.014 15.4 14.4 0.037 14.1 1.9 3.0 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Exonuc_VII_L PF02601.15 gi|284176142|ref|YP_003406419.1| - 0.015 14.9 4.9 0.025 14.2 4.9 1.5 1 0 0 1 1 1 0 Exonuclease VII, large subunit HrpB7 PF09486.10 gi|284176142|ref|YP_003406419.1| - 0.018 15.4 19.4 0.018 15.4 19.4 2.2 2 0 0 2 2 1 0 Bacterial type III secretion protein (HrpB7) FliD_N PF02465.18 gi|284176142|ref|YP_003406419.1| - 0.023 15.4 0.2 9.5 7.0 0.5 2.6 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus FH2 PF02181.23 gi|284176142|ref|YP_003406419.1| - 0.023 13.8 7.7 0.78 8.8 0.3 2.2 2 0 0 2 2 2 0 Formin Homology 2 Domain USP8_interact PF08941.10 gi|284176142|ref|YP_003406419.1| - 0.033 14.0 4.1 1.9 8.3 0.1 2.3 2 0 0 2 2 2 0 USP8 interacting Herpes_UL6 PF01763.16 gi|284176142|ref|YP_003406419.1| - 0.042 12.4 9.8 0.31 9.5 3.3 2.2 1 1 1 2 2 2 0 Herpesvirus UL6 like TrmB PF01978.19 gi|284176142|ref|YP_003406419.1| - 0.046 13.6 1.3 0.33 10.9 0.1 2.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA_10 PF12846.7 gi|284176142|ref|YP_003406419.1| - 0.05 12.5 3.8 0.32 9.8 0.0 3.0 2 1 1 3 3 3 0 AAA-like domain DUF4795 PF16043.5 gi|284176142|ref|YP_003406419.1| - 0.05 13.2 16.1 0.57 9.7 3.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) KxDL PF10241.9 gi|284176142|ref|YP_003406419.1| - 0.052 13.8 6.7 0.69 10.2 0.6 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein TMF_DNA_bd PF12329.8 gi|284176142|ref|YP_003406419.1| - 0.066 13.2 21.3 0.93 9.5 5.1 3.1 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding AAA_31 PF13614.6 gi|284176142|ref|YP_003406419.1| - 0.081 12.8 0.4 0.35 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fib_alpha PF08702.10 gi|284176142|ref|YP_003406419.1| - 0.1 12.8 7.4 0.44 10.7 7.5 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|284176142|ref|YP_003406419.1| - 0.1 12.7 27.2 0.11 12.6 9.1 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus AAA_22 PF13401.6 gi|284176142|ref|YP_003406419.1| - 0.1 12.8 1.2 0.3 11.3 0.0 2.3 2 1 0 2 2 1 0 AAA domain Phage_GP20 PF06810.11 gi|284176142|ref|YP_003406419.1| - 0.11 12.3 15.7 0.089 12.6 2.7 3.0 3 0 0 3 3 2 0 Phage minor structural protein GP20 YkyA PF10368.9 gi|284176142|ref|YP_003406419.1| - 0.12 12.0 16.8 0.6 9.8 3.6 2.4 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein Fez1 PF06818.15 gi|284176142|ref|YP_003406419.1| - 0.13 12.7 33.6 0.048 14.1 17.2 2.6 1 1 1 2 2 2 0 Fez1 Cast PF10174.9 gi|284176142|ref|YP_003406419.1| - 0.15 10.2 26.9 0.24 9.6 11.5 1.7 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone TACC_C PF05010.14 gi|284176142|ref|YP_003406419.1| - 0.16 11.7 16.7 0.37 10.6 16.7 1.5 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal ERM PF00769.19 gi|284176142|ref|YP_003406419.1| - 0.17 11.7 35.7 0.48 10.2 35.7 1.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Spc7 PF08317.11 gi|284176142|ref|YP_003406419.1| - 0.18 10.6 27.4 0.056 12.3 11.4 2.6 2 1 1 3 3 2 0 Spc7 kinetochore protein AAA_18 PF13238.6 gi|284176142|ref|YP_003406419.1| - 0.2 12.2 0.0 0.2 12.2 0.0 3.6 3 1 1 4 4 1 0 AAA domain AAA_13 PF13166.6 gi|284176142|ref|YP_003406419.1| - 0.23 10.0 16.0 1.3 7.6 15.5 2.1 1 1 0 1 1 1 0 AAA domain FliJ PF02050.16 gi|284176142|ref|YP_003406419.1| - 0.24 11.6 12.5 2.3 8.4 3.2 2.4 1 1 1 2 2 2 0 Flagellar FliJ protein YabA PF06156.13 gi|284176142|ref|YP_003406419.1| - 0.28 11.9 17.2 0.053 14.2 4.5 2.8 1 1 1 2 2 2 0 Initiation control protein YabA Prefoldin_2 PF01920.20 gi|284176142|ref|YP_003406419.1| - 0.29 11.1 29.3 0.11 12.4 8.1 3.7 3 1 2 5 5 4 0 Prefoldin subunit DUF1664 PF07889.12 gi|284176142|ref|YP_003406419.1| - 0.31 11.1 12.6 2.2 8.3 3.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|284176142|ref|YP_003406419.1| - 0.34 11.0 22.7 2.6 8.1 22.6 2.5 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Bacillus_HBL PF05791.11 gi|284176142|ref|YP_003406419.1| - 0.42 10.4 2.8 10 5.9 0.1 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) FPP PF05911.11 gi|284176142|ref|YP_003406419.1| - 0.42 8.7 22.3 0.23 9.6 20.1 1.4 1 1 0 1 1 1 0 Filament-like plant protein, long coiled-coil CASP_C PF08172.12 gi|284176142|ref|YP_003406419.1| - 0.44 9.9 18.3 0.62 9.4 16.9 1.7 1 1 0 1 1 1 0 CASP C terminal Cep57_MT_bd PF06657.13 gi|284176142|ref|YP_003406419.1| - 0.47 10.9 14.1 4.7 7.7 1.0 3.3 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF4094 PF13334.6 gi|284176142|ref|YP_003406419.1| - 0.51 10.8 2.5 4.6 7.7 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) DUF812 PF05667.11 gi|284176142|ref|YP_003406419.1| - 0.62 8.9 22.3 3 6.6 22.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Spc24 PF08286.11 gi|284176142|ref|YP_003406419.1| - 0.65 10.3 23.2 3.8 7.8 2.5 3.8 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 ABC_tran PF00005.27 gi|284176142|ref|YP_003406419.1| - 0.68 10.4 4.0 5.2 7.6 0.0 3.3 2 1 0 2 2 2 0 ABC transporter EzrA PF06160.12 gi|284176142|ref|YP_003406419.1| - 0.84 7.7 17.6 0.8 7.8 3.5 2.2 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF3450 PF11932.8 gi|284176142|ref|YP_003406419.1| - 0.88 8.8 19.0 0.7 9.2 5.6 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) DivIC PF04977.15 gi|284176142|ref|YP_003406419.1| - 1.1 9.1 23.3 3.9 7.3 2.3 3.7 2 1 1 3 3 3 0 Septum formation initiator COG2 PF06148.11 gi|284176142|ref|YP_003406419.1| - 1.1 9.3 15.7 1.8 8.6 3.4 2.8 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HIP1_clath_bdg PF16515.5 gi|284176142|ref|YP_003406419.1| - 1.4 9.6 22.2 2.5 8.8 10.1 3.1 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Prefoldin PF02996.17 gi|284176142|ref|YP_003406419.1| - 1.5 8.7 16.5 4.8 7.1 3.0 3.4 2 1 1 3 3 3 0 Prefoldin subunit Wtap PF17098.5 gi|284176142|ref|YP_003406419.1| - 1.7 8.6 22.5 16 5.4 4.1 2.5 1 1 1 2 2 2 0 WTAP/Mum2p family DUF4201 PF13870.6 gi|284176142|ref|YP_003406419.1| - 1.7 8.4 20.2 5 6.8 6.6 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4201) DUF16 PF01519.16 gi|284176142|ref|YP_003406419.1| - 1.7 9.1 13.6 4.1 7.9 2.5 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 CREPT PF16566.5 gi|284176142|ref|YP_003406419.1| - 1.9 8.7 13.3 1.1 9.4 3.4 2.5 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF3584 PF12128.8 gi|284176142|ref|YP_003406419.1| - 1.9 5.9 23.5 3 5.3 23.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MAD PF05557.13 gi|284176142|ref|YP_003406419.1| - 1.9 6.8 28.1 0.25 9.7 3.8 2.3 1 1 1 2 2 2 0 Mitotic checkpoint protein Laminin_II PF06009.12 gi|284176142|ref|YP_003406419.1| - 2.1 8.4 18.0 0.85 9.6 2.4 2.7 2 1 1 3 3 2 0 Laminin Domain II SKA1 PF07160.12 gi|284176142|ref|YP_003406419.1| - 2.7 7.8 14.3 5.3 6.8 3.2 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 T3SSipB PF16535.5 gi|284176142|ref|YP_003406419.1| - 2.9 8.4 6.0 29 5.1 3.4 2.3 1 1 1 2 2 2 0 Type III cell invasion protein SipB RPW8 PF05659.11 gi|284176142|ref|YP_003406419.1| - 3 7.5 10.2 5.2 6.8 2.3 2.6 1 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF2205 PF10224.9 gi|284176142|ref|YP_003406419.1| - 3.2 7.8 16.6 0.29 11.2 6.9 2.6 2 0 0 2 2 2 0 Short coiled-coil protein DUF4763 PF15960.5 gi|284176142|ref|YP_003406419.1| - 3.2 7.0 14.8 10 5.3 14.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4763) Atg14 PF10186.9 gi|284176142|ref|YP_003406419.1| - 3.4 6.7 20.4 0.74 8.8 7.5 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Allexi_40kDa PF05549.11 gi|284176142|ref|YP_003406419.1| - 3.6 7.0 9.3 0.69 9.4 1.3 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.13 gi|284176142|ref|YP_003406419.1| - 4 7.0 10.4 9 5.8 1.3 2.5 2 0 0 2 2 2 0 fzo-like conserved region HemX PF04375.14 gi|284176142|ref|YP_003406419.1| - 4.2 6.6 12.0 5.7 6.1 1.7 2.2 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Cep57_CLD PF14073.6 gi|284176142|ref|YP_003406419.1| - 4.7 7.2 27.0 0.13 12.3 20.5 1.6 2 0 0 2 2 1 0 Centrosome localisation domain of Cep57 OmpH PF03938.14 gi|284176142|ref|YP_003406419.1| - 4.7 7.5 19.4 11 6.4 4.4 2.8 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF4407 PF14362.6 gi|284176142|ref|YP_003406419.1| - 4.8 6.5 22.8 0.066 12.6 14.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF4446 PF14584.6 gi|284176142|ref|YP_003406419.1| - 4.9 7.1 12.7 1.7 8.6 1.4 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) DNA_topoisoIV PF00521.20 gi|284176142|ref|YP_003406419.1| - 5 5.9 7.2 7.5 5.3 7.2 1.2 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A SHE3 PF17078.5 gi|284176142|ref|YP_003406419.1| - 5 6.8 23.6 1.3 8.6 8.8 2.4 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 DivIVA PF05103.13 gi|284176142|ref|YP_003406419.1| - 5.1 7.2 22.9 2.2 8.4 10.3 3.4 2 1 2 4 4 3 0 DivIVA protein Occludin_ELL PF07303.13 gi|284176142|ref|YP_003406419.1| - 5.2 7.9 7.6 30 5.4 0.7 2.9 2 0 0 2 2 2 0 Occludin homology domain DUF641 PF04859.12 gi|284176142|ref|YP_003406419.1| - 5.5 7.3 18.1 13 6.1 4.4 2.9 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) FapA PF03961.13 gi|284176142|ref|YP_003406419.1| - 8 4.9 14.5 5.6 5.5 3.1 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A Cnn_1N PF07989.11 gi|284176142|ref|YP_003406419.1| - 8.3 6.7 26.7 19 5.5 12.1 4.1 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 KLRAQ PF10205.9 gi|284176142|ref|YP_003406419.1| - 9.7 6.5 13.3 15 5.9 3.7 2.8 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein AAA_31 PF13614.6 gi|284176143|ref|YP_003406420.1| - 9.1e-35 120.2 0.0 1.2e-34 119.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284176143|ref|YP_003406420.1| - 2.1e-15 56.9 0.0 3.5e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|284176143|ref|YP_003406420.1| - 1.1e-08 34.9 0.8 5.9e-07 29.2 0.1 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|284176143|ref|YP_003406420.1| - 8.5e-07 28.4 0.1 3e-05 23.4 0.1 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|284176143|ref|YP_003406420.1| - 1.6e-05 24.3 0.5 0.0087 15.4 0.1 3.1 3 0 0 3 3 3 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|284176143|ref|YP_003406420.1| - 0.00041 19.9 0.1 0.0095 15.4 0.1 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|284176143|ref|YP_003406420.1| - 0.0077 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 gi|284176143|ref|YP_003406420.1| - 0.019 14.4 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|284176143|ref|YP_003406420.1| - 0.04 13.7 0.0 0.065 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|284176143|ref|YP_003406420.1| - 0.082 13.5 0.0 0.21 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|284176143|ref|YP_003406420.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.5 2 0 0 2 2 2 0 VirC1 protein SRP54 PF00448.22 gi|284176143|ref|YP_003406420.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Smg8_Smg9 PF10220.9 gi|284176144|ref|YP_003406421.1| - 4.3 5.5 4.4 4.7 5.4 4.4 1.0 1 0 0 1 1 1 0 Smg8_Smg9 ERCC3_RAD25_C PF16203.5 gi|284176145|ref|YP_003406422.1| - 6.5e-25 87.8 0.0 1e-24 87.1 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|284176145|ref|YP_003406422.1| - 2.8e-13 50.3 0.0 5.3e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|284176145|ref|YP_003406422.1| - 3.4e-13 49.9 0.0 1.5e-12 47.8 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|284176145|ref|YP_003406422.1| - 2.2e-11 43.1 0.0 2.7e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|284176145|ref|YP_003406422.1| - 4.1e-06 26.7 0.0 3.9e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_33 PF13671.6 gi|284176145|ref|YP_003406422.1| - 0.0074 16.5 0.4 0.2 11.8 0.0 3.2 3 1 0 3 3 3 1 AAA domain AAA_30 PF13604.6 gi|284176145|ref|YP_003406422.1| - 0.014 15.1 0.1 0.07 12.8 0.0 2.2 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.9 gi|284176145|ref|YP_003406422.1| - 0.024 13.9 0.1 4.5 6.4 0.2 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|284176145|ref|YP_003406422.1| - 0.028 14.0 0.5 0.19 11.3 0.0 2.7 4 0 0 4 4 4 0 AAA domain AAA PF00004.29 gi|284176145|ref|YP_003406422.1| - 0.18 12.2 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|284176145|ref|YP_003406422.1| - 0.19 11.5 0.0 0.42 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|284176145|ref|YP_003406422.1| - 0.22 11.8 0.4 2.8 8.2 0.2 2.9 3 1 0 3 3 3 0 AAA domain T2SSF PF00482.23 gi|284176146|ref|YP_003406423.1| - 0.014 15.3 0.6 0.014 15.3 0.6 4.1 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|284176147|ref|YP_003406424.1| - 2.3e-34 118.7 0.0 3.3e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|284176147|ref|YP_003406424.1| - 0.00056 20.4 0.0 0.00095 19.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|284176147|ref|YP_003406424.1| - 0.014 15.1 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|284176147|ref|YP_003406424.1| - 0.018 14.3 0.0 0.042 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|284176147|ref|YP_003406424.1| - 0.026 14.9 1.7 0.036 14.5 0.1 2.1 3 0 0 3 3 3 0 AAA ATPase domain cobW PF02492.19 gi|284176147|ref|YP_003406424.1| - 0.048 13.3 0.0 0.096 12.3 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|284176147|ref|YP_003406424.1| - 0.059 13.6 0.0 0.24 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|284176147|ref|YP_003406424.1| - 0.08 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|284176147|ref|YP_003406424.1| - 0.14 11.7 0.0 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain FtsK_SpoIIIE PF01580.18 gi|284176147|ref|YP_003406424.1| - 0.14 11.5 0.0 0.3 10.4 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2749 PF10907.8 gi|284176149|ref|YP_003406426.1| - 7.3 6.8 7.5 8.8 6.6 0.3 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2749) AAA PF00004.29 gi|284176150|ref|YP_003406427.1| - 5.3e-96 318.1 0.0 4.5e-47 159.8 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284176150|ref|YP_003406427.1| - 2.6e-26 91.1 2.0 2.5e-12 46.4 0.6 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|284176150|ref|YP_003406427.1| - 2.2e-22 79.0 1.0 1.1e-21 76.8 0.5 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|284176150|ref|YP_003406427.1| - 1.7e-15 57.1 0.0 2.5e-07 30.6 0.0 3.3 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|284176150|ref|YP_003406427.1| - 5.7e-15 55.9 0.0 8.9e-07 29.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|284176150|ref|YP_003406427.1| - 1e-14 55.3 1.0 1.4e-05 25.5 0.1 4.2 2 2 1 3 3 3 2 AAA ATPase domain AAA_33 PF13671.6 gi|284176150|ref|YP_003406427.1| - 1.3e-13 51.3 0.0 1.7e-06 28.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|284176150|ref|YP_003406427.1| - 8.2e-13 48.5 0.4 0.00013 22.0 0.0 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|284176150|ref|YP_003406427.1| - 8.2e-10 39.1 0.2 0.005 17.1 0.0 3.6 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|284176150|ref|YP_003406427.1| - 3.5e-09 36.8 0.0 0.003 17.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|284176150|ref|YP_003406427.1| - 6.2e-09 35.5 0.0 0.0025 17.1 0.0 2.7 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_28 PF13521.6 gi|284176150|ref|YP_003406427.1| - 2.9e-08 34.1 0.2 0.0087 16.3 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|284176150|ref|YP_003406427.1| - 4.1e-08 33.8 0.2 0.022 15.3 0.0 3.4 4 0 0 4 4 2 2 AAA domain AAA_3 PF07726.11 gi|284176150|ref|YP_003406427.1| - 2.6e-07 30.6 0.1 0.02 14.7 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|284176150|ref|YP_003406427.1| - 8.4e-07 29.0 0.0 0.055 13.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|284176150|ref|YP_003406427.1| - 9.1e-07 28.8 0.0 0.034 13.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|284176150|ref|YP_003406427.1| - 1.1e-06 29.0 0.0 0.04 14.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|284176150|ref|YP_003406427.1| - 1.4e-06 27.8 0.4 0.058 12.8 0.2 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CDC48_2 PF02933.17 gi|284176150|ref|YP_003406427.1| - 3.1e-06 26.9 0.5 3.1e-06 26.9 0.5 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), domain 2 ABC_tran PF00005.27 gi|284176150|ref|YP_003406427.1| - 3.6e-06 27.5 0.0 0.034 14.7 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.26 gi|284176150|ref|YP_003406427.1| - 9.8e-06 25.4 0.0 0.27 10.9 0.0 3.0 4 0 0 4 4 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|284176150|ref|YP_003406427.1| - 1.1e-05 24.8 0.0 0.021 14.1 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|284176150|ref|YP_003406427.1| - 3.1e-05 23.6 0.0 0.087 12.3 0.0 2.6 3 0 0 3 3 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 gi|284176150|ref|YP_003406427.1| - 4.3e-05 23.3 0.0 0.21 11.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|284176150|ref|YP_003406427.1| - 4.5e-05 23.4 0.0 0.22 11.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|284176150|ref|YP_003406427.1| - 7.8e-05 23.0 0.0 0.079 13.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|284176150|ref|YP_003406427.1| - 9.7e-05 22.5 0.0 0.71 10.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_30 PF13604.6 gi|284176150|ref|YP_003406427.1| - 0.00012 21.8 0.0 0.69 9.6 0.0 2.9 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.9 gi|284176150|ref|YP_003406427.1| - 0.00012 21.4 0.0 0.27 10.4 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.17 gi|284176150|ref|YP_003406427.1| - 0.00014 21.0 0.0 0.18 10.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|284176150|ref|YP_003406427.1| - 0.00019 21.0 0.1 0.75 9.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.6 gi|284176150|ref|YP_003406427.1| - 0.00021 20.9 9.5 1.7 8.2 0.1 4.8 3 2 1 5 5 4 2 AAA domain DUF815 PF05673.13 gi|284176150|ref|YP_003406427.1| - 0.00024 20.4 0.0 0.37 9.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|284176150|ref|YP_003406427.1| - 0.00024 21.1 0.3 0.7 9.8 0.1 3.5 4 0 0 4 4 4 1 NACHT domain NB-ARC PF00931.22 gi|284176150|ref|YP_003406427.1| - 0.00041 19.6 0.0 0.38 9.9 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain ATPase PF06745.13 gi|284176150|ref|YP_003406427.1| - 0.0012 18.2 0.0 2 7.7 0.0 2.9 3 0 0 3 3 2 2 KaiC AAA_17 PF13207.6 gi|284176150|ref|YP_003406427.1| - 0.0047 17.4 0.0 1.4 9.3 0.0 3.0 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|284176150|ref|YP_003406427.1| - 0.0093 14.9 0.0 0.58 9.0 0.0 2.2 2 0 0 2 2 2 1 AFG1-like ATPase ATPase_2 PF01637.18 gi|284176150|ref|YP_003406427.1| - 0.011 15.7 0.0 5.1 6.9 0.0 3.4 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea TniB PF05621.11 gi|284176150|ref|YP_003406427.1| - 0.012 15.1 0.0 11 5.4 0.0 3.5 3 1 1 4 4 4 0 Bacterial TniB protein NTPase_1 PF03266.15 gi|284176150|ref|YP_003406427.1| - 0.017 15.1 0.1 7.3 6.5 0.0 2.8 2 2 0 2 2 2 0 NTPase SKI PF01202.22 gi|284176150|ref|YP_003406427.1| - 0.022 14.9 0.0 3.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|284176150|ref|YP_003406427.1| - 0.03 14.1 0.0 8.3 6.1 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase CPT PF07931.12 gi|284176150|ref|YP_003406427.1| - 0.033 14.0 0.0 5.7 6.8 0.0 3.0 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|284176150|ref|YP_003406427.1| - 0.046 13.8 0.0 4 7.5 0.0 2.4 2 0 0 2 2 2 0 Torsin Zot PF05707.12 gi|284176150|ref|YP_003406427.1| - 0.068 12.8 0.0 4.1 7.0 0.0 2.9 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Viral_helicase1 PF01443.18 gi|284176150|ref|YP_003406427.1| - 0.085 12.6 0.0 5.5 6.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Hydin_ADK PF17213.3 gi|284176150|ref|YP_003406427.1| - 0.087 13.1 0.0 4.4 7.5 0.0 2.6 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain ResIII PF04851.15 gi|284176150|ref|YP_003406427.1| - 0.09 12.8 0.0 19 5.2 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit DUF4242 PF14026.6 gi|284176150|ref|YP_003406427.1| - 0.16 12.1 0.2 62 3.9 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF4242) HTH_10 PF04967.12 gi|284176151|ref|YP_003406428.1| - 2.4e-14 52.8 0.0 3.7e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284176151|ref|YP_003406428.1| - 1.7e-05 24.7 0.3 3.1e-05 23.9 0.3 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|284176151|ref|YP_003406428.1| - 0.0014 18.1 0.1 0.0024 17.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|284176151|ref|YP_003406428.1| - 0.0026 17.5 0.4 0.0067 16.2 0.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284176151|ref|YP_003406428.1| - 0.014 15.6 0.0 0.041 14.1 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|284176151|ref|YP_003406428.1| - 0.014 15.3 0.0 0.041 13.8 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|284176151|ref|YP_003406428.1| - 0.046 13.3 0.2 0.12 11.9 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribonuc_red_sm PF00268.21 gi|284176152|ref|YP_003406429.1| - 2.6e-10 40.2 0.0 3.7e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain SHOCT PF09851.9 gi|284176153|ref|YP_003406430.1| - 7.2e-07 28.7 2.1 1.5e-06 27.7 2.1 1.6 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.12 gi|284176153|ref|YP_003406430.1| - 0.0027 17.7 1.5 0.0048 16.9 1.5 1.5 1 1 0 1 1 1 1 Gas vesicle protein G Eaf7 PF07904.13 gi|284176153|ref|YP_003406430.1| - 0.025 14.9 0.0 0.033 14.5 0.0 1.1 1 0 0 1 1 1 0 Chromatin modification-related protein EAF7 DUF2613 PF11021.8 gi|284176153|ref|YP_003406430.1| - 0.075 13.2 0.8 0.075 13.2 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) VbhA PF18495.1 gi|284176153|ref|YP_003406430.1| - 0.13 12.1 0.5 0.13 12.1 0.5 2.2 3 0 0 3 3 3 0 Antitoxin VbhA zf-C2H2_3 PF13878.6 gi|284176154|ref|YP_003406431.1| - 0.0082 15.9 1.6 0.014 15.2 1.6 1.5 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO RNHCP PF12647.7 gi|284176154|ref|YP_003406431.1| - 0.022 14.8 0.2 0.025 14.6 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain DUF3544 PF12064.8 gi|284176159|ref|YP_003406436.1| - 0.58 10.4 4.3 0.84 9.9 4.3 1.1 1 0 0 1 1 1 0 Protein kinase C-binding protein 1 GHMP_kinases_N PF00288.26 gi|284176160|ref|YP_003406437.1| - 3.9e-11 43.0 1.6 3.9e-11 43.0 1.6 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|284176160|ref|YP_003406437.1| - 0.047 14.1 0.3 0.15 12.4 0.0 1.9 2 0 0 2 2 2 0 GHMP kinases C terminal CM_2 PF01817.21 gi|284176161|ref|YP_003406438.1| - 2.7e-16 59.7 4.5 3.3e-16 59.4 4.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF853 PF05872.12 gi|284176161|ref|YP_003406438.1| - 0.042 12.4 0.3 0.051 12.2 0.3 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) GPS2_interact PF15784.5 gi|284176161|ref|YP_003406438.1| - 0.54 10.7 4.9 0.17 12.3 2.3 1.6 2 1 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain Methyltransf_11 PF08241.12 gi|284176162|ref|YP_003406439.1| - 2.8e-30 104.8 0.1 5e-30 104.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|284176162|ref|YP_003406439.1| - 2.1e-29 102.1 0.1 4.2e-29 101.1 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|284176162|ref|YP_003406439.1| - 1.7e-27 96.1 0.0 2.2e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|284176162|ref|YP_003406439.1| - 3.7e-23 82.1 0.0 6.5e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|284176162|ref|YP_003406439.1| - 3.9e-18 65.8 0.0 5.4e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284176162|ref|YP_003406439.1| - 7.1e-16 58.8 0.0 1.1e-15 58.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|284176162|ref|YP_003406439.1| - 1e-10 41.4 0.0 1.9e-10 40.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|284176162|ref|YP_003406439.1| - 3.5e-08 33.4 0.0 4.9e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|284176162|ref|YP_003406439.1| - 3.8e-07 29.9 0.0 5.6e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|284176162|ref|YP_003406439.1| - 6.1e-07 29.1 0.0 8.7e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|284176162|ref|YP_003406439.1| - 1.6e-05 24.4 0.0 2.3e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|284176162|ref|YP_003406439.1| - 2.2e-05 24.5 0.0 3.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|284176162|ref|YP_003406439.1| - 0.00011 21.3 0.0 0.00017 20.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|284176162|ref|YP_003406439.1| - 0.00016 20.8 0.0 0.00025 20.3 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase UPF0020 PF01170.18 gi|284176162|ref|YP_003406439.1| - 0.00097 18.9 0.0 0.0048 16.6 0.0 2.1 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.7 gi|284176162|ref|YP_003406439.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|284176162|ref|YP_003406439.1| - 0.0021 17.9 0.0 0.014 15.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase DOT1 PF08123.13 gi|284176162|ref|YP_003406439.1| - 0.0038 16.8 0.0 0.0056 16.2 0.0 1.2 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_2 PF00891.18 gi|284176162|ref|YP_003406439.1| - 0.0061 15.9 0.0 0.0092 15.3 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase domain CheR PF01739.18 gi|284176162|ref|YP_003406439.1| - 0.0065 16.0 0.0 0.63 9.5 0.0 2.3 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain FtsJ PF01728.19 gi|284176162|ref|YP_003406439.1| - 0.009 16.1 0.0 0.017 15.2 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase NodS PF05401.11 gi|284176162|ref|YP_003406439.1| - 0.036 13.7 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|284176162|ref|YP_003406439.1| - 0.043 12.7 0.0 0.059 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.16 gi|284176162|ref|YP_003406439.1| - 0.055 12.0 0.0 0.084 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Fibrillarin PF01269.17 gi|284176162|ref|YP_003406439.1| - 0.072 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Abhydrolase_6 PF12697.7 gi|284176163|ref|YP_003406440.1| - 1.2e-19 71.9 1.8 1.4e-19 71.6 1.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284176163|ref|YP_003406440.1| - 3.1e-12 46.3 0.0 4.5e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|284176163|ref|YP_003406440.1| - 2e-11 44.1 0.0 9.7e-10 38.5 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Thioesterase PF00975.20 gi|284176163|ref|YP_003406440.1| - 0.034 14.3 0.0 0.081 13.0 0.0 1.6 1 1 0 1 1 1 0 Thioesterase domain Ser_hydrolase PF06821.13 gi|284176163|ref|YP_003406440.1| - 0.087 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase SDF PF00375.18 gi|284176164|ref|YP_003406441.1| - 1.1e-110 370.3 41.1 1.3e-110 370.1 41.1 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Epimerase PF01370.21 gi|284176165|ref|YP_003406442.1| - 5.3e-39 134.1 0.0 7e-39 133.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284176165|ref|YP_003406442.1| - 1.6e-21 77.1 0.0 2.7e-21 76.3 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284176165|ref|YP_003406442.1| - 6.2e-20 71.4 0.0 8.4e-20 70.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|284176165|ref|YP_003406442.1| - 3.3e-16 59.3 0.0 4.4e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|284176165|ref|YP_003406442.1| - 6.4e-15 55.5 0.0 1.3e-14 54.5 0.0 1.6 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284176165|ref|YP_003406442.1| - 1.7e-08 34.0 0.0 6.6e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|284176165|ref|YP_003406442.1| - 3.1e-07 29.8 0.0 1e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein CBS PF00571.28 gi|284176165|ref|YP_003406442.1| - 3.9e-07 30.4 4.0 2.4e-06 27.9 0.2 3.1 2 1 0 2 2 2 1 CBS domain NmrA PF05368.13 gi|284176165|ref|YP_003406442.1| - 4.3e-07 29.7 0.0 9e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|284176165|ref|YP_003406442.1| - 0.0063 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|284176165|ref|YP_003406442.1| - 0.0099 16.1 0.5 0.14 12.4 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_C PF03720.15 gi|284176165|ref|YP_003406442.1| - 0.046 14.1 0.0 0.17 12.3 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DegT_DnrJ_EryC1 PF01041.17 gi|284176166|ref|YP_003406443.1| - 3.3e-115 385.3 0.0 4e-115 385.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|284176166|ref|YP_003406443.1| - 6e-06 25.7 0.0 9.3e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284176166|ref|YP_003406443.1| - 0.0049 16.2 0.0 0.11 11.8 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|284176166|ref|YP_003406443.1| - 0.011 14.5 0.0 0.015 14.1 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.20 gi|284176166|ref|YP_003406443.1| - 0.084 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Usp PF00582.26 gi|284176167|ref|YP_003406444.1| - 0.015 15.8 6.1 0.032 14.7 6.1 1.6 1 1 0 1 1 1 0 Universal stress protein family DUF4719 PF15843.5 gi|284176167|ref|YP_003406444.1| - 0.027 14.6 0.1 0.033 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4719) DUF4271 PF14093.6 gi|284176168|ref|YP_003406445.1| - 0.0095 15.9 4.8 0.011 15.7 4.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) DUF3262 PF11660.8 gi|284176168|ref|YP_003406445.1| - 0.042 14.2 0.5 0.042 14.2 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3262) DUF5353 PF17304.2 gi|284176168|ref|YP_003406445.1| - 0.12 12.2 0.9 0.17 11.7 0.2 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5353) Proton_antipo_N PF00662.20 gi|284176168|ref|YP_003406445.1| - 2.3 8.4 6.8 3.9 7.6 0.6 2.4 1 1 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_20 PF12840.7 gi|284176169|ref|YP_003406446.1| - 1.3e-08 34.8 0.5 1.8e-08 34.3 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.19 gi|284176169|ref|YP_003406446.1| - 0.00045 20.3 0.0 0.0006 20.0 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family TrmB PF01978.19 gi|284176169|ref|YP_003406446.1| - 0.00051 19.9 0.0 0.00076 19.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284176169|ref|YP_003406446.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284176169|ref|YP_003406446.1| - 0.0015 18.0 0.1 0.0026 17.3 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|284176169|ref|YP_003406446.1| - 0.0023 17.7 0.1 0.0034 17.1 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|284176169|ref|YP_003406446.1| - 0.013 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain PadR PF03551.14 gi|284176169|ref|YP_003406446.1| - 0.016 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_AsnC-type PF13404.6 gi|284176169|ref|YP_003406446.1| - 0.029 14.2 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|284176169|ref|YP_003406446.1| - 0.042 13.8 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|284176169|ref|YP_003406446.1| - 0.047 13.6 0.0 0.081 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|284176169|ref|YP_003406446.1| - 0.049 13.5 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ArsR PF09824.9 gi|284176169|ref|YP_003406446.1| - 0.069 12.8 0.0 0.076 12.6 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Hydrolase_4 PF12146.8 gi|284176170|ref|YP_003406447.1| - 4.8e-16 58.7 0.2 1.8e-15 56.9 0.2 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|284176170|ref|YP_003406447.1| - 1.8e-13 50.7 0.0 2.9e-12 46.8 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|284176170|ref|YP_003406447.1| - 6.2e-11 43.3 1.3 8.3e-11 42.9 1.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|284176170|ref|YP_003406447.1| - 1e-07 31.6 0.0 0.011 15.2 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|284176170|ref|YP_003406447.1| - 9.4e-06 25.4 0.0 1.3e-05 24.9 0.0 1.4 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|284176170|ref|YP_003406447.1| - 0.001 18.6 0.4 0.99 8.9 0.0 2.6 3 0 0 3 3 3 2 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 gi|284176170|ref|YP_003406447.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold Peptidase_S28 PF05577.12 gi|284176170|ref|YP_003406447.1| - 0.02 13.7 0.0 0.042 12.6 0.0 1.5 2 0 0 2 2 2 0 Serine carboxypeptidase S28 HalOD2 PF18547.1 gi|284176171|ref|YP_003406448.1| - 0.034 14.1 1.4 0.16 11.9 0.1 2.0 2 0 0 2 2 2 0 Halobacterial output domain 2 Zn_ribbon_SprT PF17283.2 gi|284176171|ref|YP_003406448.1| - 0.055 13.4 2.7 1.7 8.6 0.3 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain TAT_signal PF10518.9 gi|284176172|ref|YP_003406449.1| - 0.037 13.9 0.3 0.058 13.3 0.3 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Trypan_PARP PF05887.11 gi|284176172|ref|YP_003406449.1| - 2.6 8.0 12.3 3 7.8 12.3 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Nop14 PF04147.12 gi|284176172|ref|YP_003406449.1| - 8.4 4.5 11.5 8.2 4.5 11.5 1.0 1 0 0 1 1 1 0 Nop14-like family LapA_dom PF06305.11 gi|284176173|ref|YP_003406450.1| - 0.0016 18.2 0.7 0.0042 16.9 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide assembly protein A domain COX14 PF14880.6 gi|284176173|ref|YP_003406450.1| - 0.026 14.4 0.3 0.055 13.3 0.1 1.6 2 0 0 2 2 2 0 Cytochrome oxidase c assembly GspL_C PF12693.7 gi|284176173|ref|YP_003406450.1| - 0.52 10.1 0.1 0.52 10.1 0.1 2.0 2 0 0 2 2 2 0 GspL periplasmic domain DUF202 PF02656.15 gi|284176173|ref|YP_003406450.1| - 2.5 8.6 6.3 7.2 7.1 6.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Phage_integrase PF00589.22 gi|284176174|ref|YP_003406451.1| - 7.8e-06 25.8 0.0 2.1e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|284176174|ref|YP_003406451.1| - 0.12 12.9 0.0 1 9.9 0.0 2.5 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF4097 PF13349.6 gi|284176175|ref|YP_003406452.1| - 9.9e-15 54.6 8.6 1.5e-13 50.7 8.6 2.3 1 1 0 1 1 1 1 Putative adhesin DUF2154 PF09922.9 gi|284176175|ref|YP_003406452.1| - 0.035 14.0 0.3 1.9 8.4 0.0 3.1 3 1 0 3 3 3 0 Cell wall-active antibiotics response 4TMS YvqF CytB6-F_Fe-S PF08802.10 gi|284176175|ref|YP_003406452.1| - 1.2 9.2 2.9 0.49 10.5 0.2 1.8 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit GDPD PF03009.17 gi|284176176|ref|YP_003406453.1| - 4.1e-21 75.9 0.0 8.4e-21 74.9 0.0 1.5 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Phage_int_SAM_1 PF02899.17 gi|284176177|ref|YP_003406454.1| - 1.4e-05 25.3 0.1 5.2e-05 23.5 0.1 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|284176177|ref|YP_003406454.1| - 0.0005 19.9 0.0 0.0025 17.7 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|284176177|ref|YP_003406454.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain Proton_antipo_M PF00361.20 gi|284176178|ref|YP_003406455.1| - 1e-32 113.5 14.7 1e-32 113.5 14.7 2.4 2 0 0 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|284176179|ref|YP_003406456.1| - 8.4e-53 179.5 19.2 3.7e-52 177.4 19.2 1.9 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|284176179|ref|YP_003406456.1| - 1.2e-05 25.2 0.2 1.2e-05 25.2 0.2 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|284176180|ref|YP_003406457.1| - 3.5e-61 207.0 18.5 5.9e-61 206.2 18.5 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|284176180|ref|YP_003406457.1| - 0.0003 20.2 7.9 0.0003 20.2 7.9 3.3 2 2 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|284176180|ref|YP_003406457.1| - 0.017 15.2 2.1 0.17 12.0 0.1 3.2 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|284176181|ref|YP_003406458.1| - 6.4e-26 90.0 3.9 8.2e-26 89.7 3.9 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2108 PF09881.9 gi|284176181|ref|YP_003406458.1| - 0.19 11.7 9.7 0.067 13.2 4.6 2.3 2 1 1 3 3 3 0 Predicted membrane protein (DUF2108) Saf_2TM PF18303.1 gi|284176181|ref|YP_003406458.1| - 0.36 10.4 4.6 0.14 11.8 1.4 1.8 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain Phage_holin_3_6 PF07332.11 gi|284176181|ref|YP_003406458.1| - 0.77 9.8 6.8 4.5 7.3 6.8 2.0 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2892 PF11127.8 gi|284176181|ref|YP_003406458.1| - 0.88 9.7 6.3 0.87 9.7 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) PMP1_2 PF08114.11 gi|284176181|ref|YP_003406458.1| - 2.2 8.1 6.9 2 8.2 2.2 2.3 2 0 0 2 2 2 0 ATPase proteolipid family MnhB PF04039.13 gi|284176182|ref|YP_003406459.1| - 1.9e-19 70.2 15.6 2.4e-19 69.9 15.6 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4013 PF13197.6 gi|284176182|ref|YP_003406459.1| - 0.13 12.1 11.8 0.18 11.6 11.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF4040 PF13244.6 gi|284176183|ref|YP_003406460.1| - 2.1e-18 66.2 15.0 2.1e-18 66.2 15.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|284176183|ref|YP_003406460.1| - 0.27 10.9 8.6 0.4 10.4 8.6 1.4 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Virul_fac_BrkB PF03631.15 gi|284176183|ref|YP_003406460.1| - 2.2 7.9 14.1 0.29 10.7 9.3 1.9 1 1 1 2 2 2 0 Virulence factor BrkB PhaG_MnhG_YufB PF03334.14 gi|284176184|ref|YP_003406461.1| - 4.1e-25 87.8 9.4 5.1e-25 87.5 9.4 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MerC PF03203.14 gi|284176184|ref|YP_003406461.1| - 0.0071 16.8 1.1 0.0083 16.6 1.1 1.1 1 0 0 1 1 1 1 MerC mercury resistance protein SAYSvFN PF10260.9 gi|284176184|ref|YP_003406461.1| - 0.96 9.4 3.8 8.3 6.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) MrpF_PhaF PF04066.13 gi|284176185|ref|YP_003406462.1| - 6.2e-19 68.1 4.5 6.2e-19 68.1 4.5 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) SLAC1 PF03595.17 gi|284176185|ref|YP_003406462.1| - 0.024 13.9 4.9 0.032 13.5 4.9 1.1 1 0 0 1 1 1 0 Voltage-dependent anion channel SUR7 PF06687.12 gi|284176185|ref|YP_003406462.1| - 7.1 6.2 8.1 15 5.2 8.1 1.5 1 1 0 1 1 1 0 SUR7/PalI family MNHE PF01899.16 gi|284176186|ref|YP_003406463.1| - 1.1e-32 112.8 1.5 1.5e-32 112.4 1.5 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit CbtB PF09489.10 gi|284176187|ref|YP_003406464.1| - 1.1e-16 60.7 3.1 1.2e-16 60.5 3.1 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.10 gi|284176188|ref|YP_003406465.1| - 8.5e-48 163.2 22.4 9.6e-48 163.1 22.4 1.0 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) Acyl_transf_3 PF01757.22 gi|284176188|ref|YP_003406465.1| - 0.27 10.3 5.6 0.32 10.0 5.0 1.3 1 1 0 1 1 1 0 Acyltransferase family CnrY PF17524.2 gi|284176188|ref|YP_003406465.1| - 0.35 11.1 4.1 0.54 10.5 3.0 1.9 1 1 0 1 1 1 0 Anti-sigma factor CnrY 2Fe-2S_thioredx PF01257.19 gi|284176189|ref|YP_003406466.1| - 0.066 13.1 0.0 0.08 12.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin Usp PF00582.26 gi|284176190|ref|YP_003406467.1| - 2.8e-34 118.6 0.4 3.2e-34 118.5 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family SnoaL_2 PF12680.7 gi|284176190|ref|YP_003406467.1| - 0.062 14.0 1.1 13 6.5 0.9 2.2 1 1 1 2 2 2 0 SnoaL-like domain HypA PF01155.19 gi|284176191|ref|YP_003406468.1| - 7.7e-05 22.7 0.2 7.7e-05 22.7 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|284176191|ref|YP_003406468.1| - 0.00018 20.8 1.6 0.00023 20.4 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L37e PF01907.19 gi|284176191|ref|YP_003406468.1| - 0.00021 21.4 1.6 0.00027 21.1 1.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|284176191|ref|YP_003406468.1| - 0.00061 19.8 1.2 0.00072 19.5 1.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon TFIIS_C PF01096.18 gi|284176191|ref|YP_003406468.1| - 0.0013 18.5 0.6 0.2 11.5 0.1 2.1 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zinc_ribbon_15 PF17032.5 gi|284176191|ref|YP_003406468.1| - 0.0025 18.5 0.4 0.0026 18.4 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|284176191|ref|YP_003406468.1| - 0.0033 17.1 0.9 0.0053 16.4 0.9 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|284176191|ref|YP_003406468.1| - 0.02 15.6 0.8 0.025 15.3 0.8 1.1 1 0 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|284176191|ref|YP_003406468.1| - 0.033 14.1 5.5 0.27 11.2 0.5 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2688 PF10892.8 gi|284176191|ref|YP_003406468.1| - 0.038 13.5 0.8 0.038 13.5 0.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) Rubredoxin_2 PF18073.1 gi|284176191|ref|YP_003406468.1| - 0.044 13.5 3.5 1.7 8.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-Mss51 PF13824.6 gi|284176191|ref|YP_003406468.1| - 0.083 13.0 0.6 0.083 13.0 0.6 1.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2757 PF10955.8 gi|284176191|ref|YP_003406468.1| - 0.087 13.1 1.7 0.13 12.6 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2757) UPF0547 PF10571.9 gi|284176191|ref|YP_003406468.1| - 0.11 12.5 1.0 0.2 11.8 1.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|284176191|ref|YP_003406468.1| - 0.17 12.1 5.0 0.47 10.6 5.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|284176191|ref|YP_003406468.1| - 0.17 11.5 2.5 0.38 10.4 0.7 2.0 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|284176191|ref|YP_003406468.1| - 0.28 11.1 4.2 0.72 9.8 0.6 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Thiolase_N PF00108.23 gi|284176192|ref|YP_003406469.1| - 9.4e-78 261.2 0.0 1.6e-77 260.4 0.0 1.4 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|284176192|ref|YP_003406469.1| - 2e-27 95.2 0.0 9e-27 93.2 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|284176192|ref|YP_003406469.1| - 0.00012 21.7 0.3 0.0007 19.3 0.1 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|284176192|ref|YP_003406469.1| - 0.02 15.0 0.0 0.14 12.3 0.0 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Alkyl_sulf_dimr PF14863.6 gi|284176192|ref|YP_003406469.1| - 0.091 13.2 0.2 1.6 9.2 0.0 2.5 3 0 0 3 3 3 0 Alkyl sulfatase dimerisation PMC2NT PF08066.12 gi|284176192|ref|YP_003406469.1| - 0.1 13.3 1.1 1.3 9.8 0.2 2.4 2 0 0 2 2 2 0 PMC2NT (NUC016) domain DHO_dh PF01180.21 gi|284176193|ref|YP_003406470.1| - 5.6e-85 285.1 0.0 6.5e-85 284.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Amidohydro_1 PF01979.20 gi|284176195|ref|YP_003406472.1| - 4.9e-22 78.7 0.0 1e-21 77.7 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|284176195|ref|YP_003406472.1| - 2.8e-16 60.1 0.8 2.6e-09 37.1 0.0 3.0 3 1 1 4 4 4 2 Amidohydrolase family SBP_bac_11 PF13531.6 gi|284176195|ref|YP_003406472.1| - 0.16 11.7 0.1 0.37 10.5 0.0 1.5 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Epimerase PF01370.21 gi|284176196|ref|YP_003406473.1| - 7.3e-58 195.9 0.0 8.7e-58 195.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|284176196|ref|YP_003406473.1| - 1.9e-55 188.6 0.0 3.3e-55 187.8 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|284176196|ref|YP_003406473.1| - 3.3e-19 69.0 0.0 5.2e-19 68.3 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|284176196|ref|YP_003406473.1| - 1.8e-17 63.4 0.1 3.4e-16 59.2 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|284176196|ref|YP_003406473.1| - 1.5e-14 53.8 0.0 1.9e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|284176196|ref|YP_003406473.1| - 5.3e-09 35.6 0.6 1.7e-05 24.2 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|284176196|ref|YP_003406473.1| - 7e-09 35.8 0.6 1.3e-08 35.0 0.1 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|284176196|ref|YP_003406473.1| - 9.2e-05 22.1 0.1 0.00032 20.3 0.1 1.8 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|284176196|ref|YP_003406473.1| - 0.17 11.8 0.9 2.4 8.0 0.9 2.6 1 1 0 1 1 1 0 KR domain PHO4 PF01384.20 gi|284176197|ref|YP_003406474.1| - 3 6.8 9.9 4.8 6.1 9.7 1.5 1 1 0 1 1 1 0 Phosphate transporter family HTH_IclR PF09339.10 gi|284176198|ref|YP_003406475.1| - 9.3e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|284176198|ref|YP_003406475.1| - 0.0012 18.8 0.1 0.002 18.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284176198|ref|YP_003406475.1| - 0.0013 18.2 0.1 0.0021 17.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284176198|ref|YP_003406475.1| - 0.021 14.7 0.1 0.048 13.5 0.1 1.6 1 0 0 1 1 1 0 MarR family BRCT_2 PF16589.5 gi|284176198|ref|YP_003406475.1| - 0.059 13.8 0.0 0.075 13.4 0.0 1.3 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain HTH_Crp_2 PF13545.6 gi|284176198|ref|YP_003406475.1| - 0.11 12.4 0.3 0.24 11.4 0.3 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|284176198|ref|YP_003406475.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BsuPI PF12690.7 gi|284176199|ref|YP_003406476.1| - 0.013 15.5 0.1 1.1 9.3 0.0 2.8 2 0 0 2 2 2 0 Intracellular proteinase inhibitor Transglut_C PF00927.22 gi|284176199|ref|YP_003406476.1| - 0.059 13.5 0.0 0.21 11.8 0.0 1.9 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain HypA PF01155.19 gi|284176201|ref|YP_003406478.1| - 0.0066 16.5 0.3 0.0074 16.3 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284176201|ref|YP_003406478.1| - 0.016 15.3 1.3 0.026 14.6 1.2 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|284176201|ref|YP_003406478.1| - 0.016 15.0 2.7 0.14 12.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3268 PF11672.8 gi|284176201|ref|YP_003406478.1| - 0.024 15.0 0.4 0.03 14.6 0.4 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain DZR PF12773.7 gi|284176201|ref|YP_003406478.1| - 0.029 14.4 1.5 0.041 13.9 1.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-DNL PF05180.12 gi|284176201|ref|YP_003406478.1| - 0.071 13.0 0.7 0.094 12.7 0.7 1.1 1 0 0 1 1 1 0 DNL zinc finger zinc_ribbon_4 PF13717.6 gi|284176201|ref|YP_003406478.1| - 0.12 12.4 1.4 2.2 8.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain HTH_20 PF12840.7 gi|284176202|ref|YP_003406479.1| - 1.5e-06 28.2 0.1 2.4e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284176202|ref|YP_003406479.1| - 0.00016 21.1 0.1 0.00021 20.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284176202|ref|YP_003406479.1| - 0.00025 20.9 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284176202|ref|YP_003406479.1| - 0.00047 20.0 0.0 0.00066 19.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|284176202|ref|YP_003406479.1| - 0.00076 19.4 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|284176202|ref|YP_003406479.1| - 0.00087 19.1 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|284176202|ref|YP_003406479.1| - 0.0017 18.1 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284176202|ref|YP_003406479.1| - 0.0061 17.0 0.0 0.0087 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain FUR PF01475.19 gi|284176202|ref|YP_003406479.1| - 0.02 15.1 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_AsnC-type PF13404.6 gi|284176202|ref|YP_003406479.1| - 0.044 13.6 0.1 0.071 12.9 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|284176202|ref|YP_003406479.1| - 0.061 13.3 0.1 0.091 12.7 0.1 1.2 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|284176203|ref|YP_003406480.1| - 1.4e-13 50.6 0.7 1.7e-13 50.3 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284176203|ref|YP_003406480.1| - 0.002 18.1 0.2 0.0026 17.7 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|284176203|ref|YP_003406480.1| - 0.018 15.3 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) DUF1495 PF07381.11 gi|284176203|ref|YP_003406480.1| - 0.07 13.0 0.1 0.085 12.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|284176203|ref|YP_003406480.1| - 0.082 13.4 0.1 0.087 13.3 0.1 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|284176203|ref|YP_003406480.1| - 0.091 12.9 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1616 PF07760.11 gi|284176204|ref|YP_003406481.1| - 1.8e-84 283.6 4.1 2.1e-84 283.4 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) A2M_BRD PF07703.14 gi|284176204|ref|YP_003406481.1| - 0.011 16.1 0.1 0.02 15.3 0.1 1.4 1 0 0 1 1 1 0 Alpha-2-macroglobulin bait region domain DUF3426 PF11906.8 gi|284176204|ref|YP_003406481.1| - 0.19 11.9 0.0 0.19 11.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3426) DUF4981 PF16353.5 gi|284176204|ref|YP_003406481.1| - 0.53 10.8 2.0 1.4 9.5 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function(DUF4981) MgtC PF02308.16 gi|284176204|ref|YP_003406481.1| - 1.5 9.2 8.4 6.6 7.1 0.1 2.5 3 0 0 3 3 3 0 MgtC family DUF417 PF04224.12 gi|284176205|ref|YP_003406482.1| - 0.1 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Tweety PF04906.13 gi|284176205|ref|YP_003406482.1| - 0.22 10.1 0.7 0.32 9.6 0.7 1.3 1 0 0 1 1 1 0 Tweety SLATT_1 PF18181.1 gi|284176205|ref|YP_003406482.1| - 0.85 9.6 3.1 3.6 7.5 3.1 2.1 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 Hexapep PF00132.24 gi|284176206|ref|YP_003406483.1| - 2.2e-27 93.7 11.8 2e-09 36.8 0.2 5.2 4 1 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|284176206|ref|YP_003406483.1| - 3.2e-19 68.4 9.0 7.4e-08 32.0 0.4 5.0 4 1 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.17 gi|284176207|ref|YP_003406484.1| - 2.1e-122 408.9 0.0 2.4e-122 408.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|284176207|ref|YP_003406484.1| - 1.6e-09 37.4 0.0 2.3e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284176207|ref|YP_003406484.1| - 1.1e-07 31.4 0.0 2.3e-07 30.4 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|284176207|ref|YP_003406484.1| - 0.0015 17.6 0.0 0.0042 16.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V GFO_IDH_MocA PF01408.22 gi|284176208|ref|YP_003406485.1| - 9e-26 91.1 0.7 1.8e-25 90.1 0.7 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|284176208|ref|YP_003406485.1| - 1.4e-07 32.0 0.1 4e-07 30.5 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|284176208|ref|YP_003406485.1| - 5.9e-05 23.3 0.8 0.00013 22.2 0.1 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284176208|ref|YP_003406485.1| - 6e-05 22.5 0.1 0.00014 21.3 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|284176208|ref|YP_003406485.1| - 0.00028 19.9 0.2 0.00053 19.0 0.2 1.4 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family CoA_binding PF02629.19 gi|284176208|ref|YP_003406485.1| - 0.00066 20.3 0.1 0.0022 18.6 0.1 1.9 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|284176208|ref|YP_003406485.1| - 0.00067 20.1 0.1 0.0015 19.0 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284176208|ref|YP_003406485.1| - 0.00069 19.2 0.1 0.0016 18.1 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sacchrp_dh_NADP PF03435.18 gi|284176208|ref|YP_003406485.1| - 0.0014 18.9 0.7 0.0073 16.6 0.7 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA_C PF02894.17 gi|284176208|ref|YP_003406485.1| - 0.017 15.1 0.0 0.1 12.6 0.0 2.2 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.20 gi|284176208|ref|YP_003406485.1| - 0.066 13.3 1.8 0.1 12.7 0.3 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus CoA_binding_2 PF13380.6 gi|284176208|ref|YP_003406485.1| - 0.1 13.1 0.4 0.31 11.5 0.4 1.9 1 1 0 1 1 1 0 CoA binding domain UDPG_MGDP_dh_N PF03721.14 gi|284176209|ref|YP_003406486.1| - 3.3e-38 131.1 0.0 5.7e-38 130.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|284176209|ref|YP_003406486.1| - 1.6e-18 66.6 0.0 2.7e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|284176209|ref|YP_003406486.1| - 6.9e-18 65.0 0.1 2.2e-17 63.4 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|284176209|ref|YP_003406486.1| - 6.2e-07 29.7 0.0 1.6e-06 28.4 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|284176209|ref|YP_003406486.1| - 0.01 15.8 0.0 0.025 14.6 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|284176209|ref|YP_003406486.1| - 0.016 15.5 0.7 0.069 13.4 0.1 2.5 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|284176209|ref|YP_003406486.1| - 0.056 13.3 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.26 gi|284176210|ref|YP_003406487.1| - 1.3e-19 70.7 0.1 3.4e-19 69.3 0.1 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|284176210|ref|YP_003406487.1| - 0.0039 17.1 0.2 0.013 15.4 0.2 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 TFIIS_C PF01096.18 gi|284176211|ref|YP_003406488.1| - 0.00014 21.7 0.6 0.0088 15.9 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) HypA PF01155.19 gi|284176211|ref|YP_003406488.1| - 0.0018 18.3 0.6 0.0018 18.3 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|284176211|ref|YP_003406488.1| - 0.0021 18.8 0.4 0.0024 18.6 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|284176211|ref|YP_003406488.1| - 0.0033 17.4 0.6 0.0038 17.2 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284176211|ref|YP_003406488.1| - 0.027 14.6 3.8 0.093 12.9 3.8 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-UBR PF02207.20 gi|284176211|ref|YP_003406488.1| - 0.029 14.5 0.4 0.035 14.3 0.4 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) UPF0547 PF10571.9 gi|284176211|ref|YP_003406488.1| - 0.049 13.7 3.1 0.081 13.0 3.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1 PF03811.13 gi|284176211|ref|YP_003406488.1| - 0.061 13.1 3.2 0.089 12.5 0.4 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_2 PF13240.6 gi|284176211|ref|YP_003406488.1| - 0.072 12.8 1.3 0.1 12.4 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|284176211|ref|YP_003406488.1| - 0.099 12.4 3.2 0.28 11.0 3.2 1.7 1 1 0 1 1 1 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|284176211|ref|YP_003406488.1| - 0.35 10.8 0.2 0.35 10.8 0.2 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S27e PF01667.17 gi|284176211|ref|YP_003406488.1| - 0.43 10.3 3.3 11 5.8 0.1 2.2 1 1 1 2 2 2 0 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|284176211|ref|YP_003406488.1| - 0.51 9.8 3.5 1.5 8.3 3.5 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HTH_45 PF14947.6 gi|284176213|ref|YP_003406490.1| - 0.16 12.0 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Thioredoxin PF00085.20 gi|284176214|ref|YP_003406491.1| - 1.3e-11 44.4 0.0 1.4e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|284176214|ref|YP_003406491.1| - 6e-08 32.8 0.0 1.2e-07 31.8 0.0 1.4 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|284176214|ref|YP_003406491.1| - 1.7e-06 28.4 0.0 0.00011 22.6 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|284176214|ref|YP_003406491.1| - 0.0021 18.1 0.0 0.003 17.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|284176214|ref|YP_003406491.1| - 0.014 15.8 0.0 0.018 15.4 0.0 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) zf-MIZ PF02891.20 gi|284176215|ref|YP_003406492.1| - 0.035 13.9 1.0 0.055 13.2 1.0 1.3 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger zf-ribbon_3 PF13248.6 gi|284176215|ref|YP_003406492.1| - 0.077 12.4 0.4 1.4 8.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|284176215|ref|YP_003406492.1| - 0.11 12.8 0.8 0.11 12.8 0.8 2.0 2 1 0 2 2 2 0 Probable Zinc-ribbon domain Gln-synt_C PF00120.24 gi|284176216|ref|YP_003406493.1| - 1.1e-138 462.0 0.1 1.3e-138 461.7 0.1 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|284176216|ref|YP_003406493.1| - 5.7e-32 109.3 0.5 1.2e-31 108.2 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|284176216|ref|YP_003406493.1| - 0.00087 19.1 0.0 0.0067 16.3 0.0 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain TFIIE_alpha PF02002.17 gi|284176217|ref|YP_003406494.1| - 0.016 15.1 0.1 0.02 14.8 0.1 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.19 gi|284176217|ref|YP_003406494.1| - 0.036 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|284176217|ref|YP_003406494.1| - 0.042 13.8 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_42 PF06224.12 gi|284176217|ref|YP_003406494.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUSC PF04632.12 gi|284176218|ref|YP_003406495.1| - 0.13 10.8 0.5 0.13 10.8 0.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family MARVEL PF01284.23 gi|284176219|ref|YP_003406496.1| - 0.032 14.2 2.1 1 9.4 1.8 2.3 1 1 1 2 2 2 0 Membrane-associating domain FA_desaturase PF00487.24 gi|284176219|ref|YP_003406496.1| - 0.14 12.0 0.5 0.15 11.9 0.5 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Metallophos PF00149.28 gi|284176221|ref|YP_003406498.1| - 3.7e-08 34.1 0.1 1.8e-07 31.9 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|284176221|ref|YP_003406498.1| - 4.7e-08 33.4 0.0 7.2e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4777 PF16007.5 gi|284176222|ref|YP_003406499.1| - 0.072 13.4 0.0 0.54 10.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) tRNA_anti-codon PF01336.25 gi|284176223|ref|YP_003406500.1| - 2.7e-06 27.3 4.3 0.48 10.4 0.1 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain DUF1453 PF07301.11 gi|284176224|ref|YP_003406501.1| - 0.097 12.7 3.7 0.12 12.4 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) TetR_C_11 PF16859.5 gi|284176224|ref|YP_003406501.1| - 0.13 12.6 1.1 3.7 7.9 0.1 2.0 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Phage_holin_3_6 PF07332.11 gi|284176224|ref|YP_003406501.1| - 0.17 11.9 8.1 0.21 11.7 8.1 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Syndecan PF01034.20 gi|284176224|ref|YP_003406501.1| - 1.5 8.8 8.9 0.076 12.9 2.2 1.9 1 1 1 2 2 2 0 Syndecan domain Zip PF02535.22 gi|284176225|ref|YP_003406502.1| - 1.5e-17 63.9 12.7 7.2e-17 61.6 12.7 1.9 1 1 0 1 1 1 1 ZIP Zinc transporter Copper-bind PF00127.20 gi|284176226|ref|YP_003406503.1| - 2.8e-10 40.5 0.1 6.4e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|284176226|ref|YP_003406503.1| - 0.009 15.8 2.4 0.019 14.8 2.4 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RibD_C PF01872.17 gi|284176227|ref|YP_003406504.1| - 2e-50 171.4 0.0 2.2e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain ECH_1 PF00378.20 gi|284176228|ref|YP_003406505.1| - 5.7e-64 215.8 0.3 6.3e-64 215.7 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|284176228|ref|YP_003406505.1| - 2.4e-33 116.0 0.3 3.2e-33 115.6 0.3 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SDH_sah PF01972.16 gi|284176228|ref|YP_003406505.1| - 0.00035 19.7 0.0 0.00055 19.0 0.0 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Methyltrn_RNA_4 PF09936.9 gi|284176228|ref|YP_003406505.1| - 0.21 11.4 0.1 11 5.8 0.0 2.1 2 0 0 2 2 2 0 SAM-dependent RNA methyltransferase PMSR PF01625.21 gi|284176229|ref|YP_003406506.1| - 1.4e-65 220.1 1.0 1.7e-65 219.9 1.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase CBS PF00571.28 gi|284176230|ref|YP_003406507.1| - 5.4e-25 87.6 1.4 5.4e-12 46.0 0.4 2.1 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.16 gi|284176230|ref|YP_003406507.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding DAO PF01266.24 gi|284176231|ref|YP_003406508.1| - 1.1e-50 173.2 7.2 1.3e-50 173.0 7.2 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|284176231|ref|YP_003406508.1| - 1.1e-07 31.5 3.6 0.00058 19.2 0.9 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|284176231|ref|YP_003406508.1| - 1.3e-06 27.8 5.8 1.8e-06 27.3 5.8 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|284176231|ref|YP_003406508.1| - 5e-06 25.9 0.3 5.2e-05 22.6 0.3 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|284176231|ref|YP_003406508.1| - 0.0034 16.8 7.9 0.045 13.1 7.9 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|284176231|ref|YP_003406508.1| - 0.014 16.0 0.1 0.051 14.1 0.3 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284176231|ref|YP_003406508.1| - 0.016 14.0 0.2 0.49 9.0 0.3 2.1 2 0 0 2 2 2 0 HI0933-like protein 3HCDH_N PF02737.18 gi|284176231|ref|YP_003406508.1| - 0.034 14.0 0.1 0.067 13.1 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|284176231|ref|YP_003406508.1| - 0.047 13.9 3.2 0.25 11.6 2.6 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|284176231|ref|YP_003406508.1| - 0.054 13.1 0.4 0.084 12.5 0.4 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|284176231|ref|YP_003406508.1| - 0.098 11.7 3.3 3.2 6.7 1.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|284176231|ref|YP_003406508.1| - 0.28 10.4 1.4 1.4 8.1 0.2 2.4 3 0 0 3 3 3 0 Thi4 family GIDA PF01134.22 gi|284176231|ref|YP_003406508.1| - 1.3 8.1 3.6 2.2 7.3 1.4 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|284176232|ref|YP_003406509.1| - 3.8e-26 92.4 0.6 5.4e-26 91.9 0.6 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|284176232|ref|YP_003406509.1| - 1.4e-14 54.1 0.1 1.1e-13 51.2 0.1 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|284176232|ref|YP_003406509.1| - 1.6e-10 40.7 1.8 8.8e-07 28.3 1.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|284176232|ref|YP_003406509.1| - 2.2e-08 33.7 0.0 2.3e-05 23.8 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|284176232|ref|YP_003406509.1| - 1.3e-07 32.1 0.2 0.0002 21.9 0.5 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|284176232|ref|YP_003406509.1| - 2.1e-07 30.9 6.9 2.9e-06 27.1 1.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|284176232|ref|YP_003406509.1| - 1.9e-05 23.5 0.0 9.5e-05 21.3 0.1 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|284176232|ref|YP_003406509.1| - 2.4e-05 23.9 0.1 3.7e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase MCRA PF06100.11 gi|284176232|ref|YP_003406509.1| - 0.0001 21.3 0.0 1.3 7.7 0.0 3.6 4 0 0 4 4 4 2 MCRA family Thi4 PF01946.17 gi|284176232|ref|YP_003406509.1| - 0.00019 20.8 0.1 0.00031 20.0 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|284176232|ref|YP_003406509.1| - 0.00042 19.7 0.1 0.0029 16.9 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|284176232|ref|YP_003406509.1| - 0.011 14.8 0.4 0.016 14.3 0.4 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A FMO-like PF00743.19 gi|284176232|ref|YP_003406509.1| - 0.02 13.4 0.0 0.028 12.8 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.12 gi|284176232|ref|YP_003406509.1| - 0.049 12.7 0.2 0.083 11.9 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|284176232|ref|YP_003406509.1| - 0.078 12.9 0.3 0.14 12.0 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.6 gi|284176232|ref|YP_003406509.1| - 0.093 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AlaDh_PNT_C PF01262.21 gi|284176232|ref|YP_003406509.1| - 0.099 11.9 0.2 0.18 11.1 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HTH_20 PF12840.7 gi|284176233|ref|YP_003406510.1| - 5e-08 32.9 0.2 7e-08 32.4 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284176233|ref|YP_003406510.1| - 5.8e-05 22.9 0.0 7.3e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284176233|ref|YP_003406510.1| - 7.5e-05 22.5 0.0 0.00021 21.0 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284176233|ref|YP_003406510.1| - 0.00026 20.8 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284176233|ref|YP_003406510.1| - 0.00081 18.9 0.0 0.0014 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF742 PF05331.11 gi|284176233|ref|YP_003406510.1| - 0.0029 17.4 0.1 0.0037 17.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF742) MarR_2 PF12802.7 gi|284176233|ref|YP_003406510.1| - 0.0034 17.2 0.1 0.0049 16.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|284176233|ref|YP_003406510.1| - 0.018 15.1 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|284176233|ref|YP_003406510.1| - 0.065 13.3 0.0 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix DUF3067 PF11267.8 gi|284176233|ref|YP_003406510.1| - 0.13 12.9 0.0 0.18 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3067) HTH_23 PF13384.6 gi|284176233|ref|YP_003406510.1| - 0.13 12.1 0.0 0.4 10.5 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain CobA_CobO_BtuR PF02572.15 gi|284176234|ref|YP_003406511.1| - 9.6e-51 172.5 0.0 1.1e-50 172.2 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|284176234|ref|YP_003406511.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|284176235|ref|YP_003406512.1| - 4.9e-27 95.1 0.0 8.1e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284176235|ref|YP_003406512.1| - 5.3e-11 42.9 0.2 2.8e-06 27.4 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|284176235|ref|YP_003406512.1| - 0.003 16.3 0.2 0.35 9.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|284176235|ref|YP_003406512.1| - 0.0044 16.8 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|284176235|ref|YP_003406512.1| - 0.014 15.6 0.1 0.036 14.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|284176235|ref|YP_003406512.1| - 0.015 15.7 0.7 0.27 11.6 0.7 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|284176235|ref|YP_003406512.1| - 0.021 15.3 0.1 0.042 14.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|284176235|ref|YP_003406512.1| - 0.023 14.5 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|284176235|ref|YP_003406512.1| - 0.027 14.2 0.1 0.14 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|284176235|ref|YP_003406512.1| - 0.036 14.4 0.1 0.067 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284176235|ref|YP_003406512.1| - 0.037 13.9 0.0 0.29 11.0 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|284176235|ref|YP_003406512.1| - 0.044 13.9 0.3 0.1 12.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|284176235|ref|YP_003406512.1| - 0.07 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|284176235|ref|YP_003406512.1| - 0.089 13.0 0.3 0.21 11.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|284176235|ref|YP_003406512.1| - 0.093 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Cdc6_C PF09079.11 gi|284176237|ref|YP_003406514.1| - 9.4e-21 73.6 0.1 3e-20 72.0 0.1 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284176237|ref|YP_003406514.1| - 4.6e-13 49.6 0.0 1.1e-12 48.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|284176237|ref|YP_003406514.1| - 1.7e-10 41.5 0.3 1.1e-08 35.7 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284176237|ref|YP_003406514.1| - 7.8e-07 29.6 0.0 1.8e-06 28.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|284176237|ref|YP_003406514.1| - 2.3e-05 23.7 0.0 0.00022 20.5 0.0 2.1 1 1 1 2 2 2 1 NB-ARC domain ATPase_2 PF01637.18 gi|284176237|ref|YP_003406514.1| - 0.0002 21.4 0.0 0.00041 20.3 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|284176237|ref|YP_003406514.1| - 0.0011 18.9 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|284176237|ref|YP_003406514.1| - 0.0033 16.9 0.0 0.0057 16.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|284176237|ref|YP_003406514.1| - 0.0055 17.1 0.0 0.011 16.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase DUF815 PF05673.13 gi|284176237|ref|YP_003406514.1| - 0.0061 15.8 0.0 0.0098 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_32 PF13654.6 gi|284176237|ref|YP_003406514.1| - 0.0071 15.2 0.3 0.5 9.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|284176237|ref|YP_003406514.1| - 0.013 16.0 0.0 0.048 14.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|284176237|ref|YP_003406514.1| - 0.025 13.5 0.0 0.13 11.1 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activat PF00158.26 gi|284176237|ref|YP_003406514.1| - 0.037 13.7 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|284176237|ref|YP_003406514.1| - 0.066 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|284176237|ref|YP_003406514.1| - 0.077 12.2 0.0 7.5 5.7 0.1 2.2 1 1 1 2 2 2 0 KAP family P-loop domain AAA_5 PF07728.14 gi|284176237|ref|YP_003406514.1| - 0.13 12.3 0.0 0.5 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|284176237|ref|YP_003406514.1| - 0.18 11.7 0.0 0.4 10.6 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase_C PF13335.6 gi|284176237|ref|YP_003406514.1| - 1.3 9.7 4.9 0.95 10.1 1.7 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal GATase_3 PF07685.14 gi|284176239|ref|YP_003406516.1| - 2.4e-40 138.2 0.0 3.8e-40 137.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|284176239|ref|YP_003406516.1| - 3.9e-21 75.4 0.0 6.3e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|284176239|ref|YP_003406516.1| - 2.4e-19 69.9 0.4 1.5e-17 64.1 0.0 3.1 2 2 1 3 3 3 1 AAA domain GATase PF00117.28 gi|284176239|ref|YP_003406516.1| - 0.0087 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I RHH_1 PF01402.21 gi|284176240|ref|YP_003406517.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family BAT PF15915.5 gi|284176242|ref|YP_003406519.1| - 1e-43 148.9 7.9 1e-43 148.9 7.9 3.2 5 0 0 5 5 5 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284176242|ref|YP_003406519.1| - 5.6e-19 67.7 0.0 3.5e-18 65.1 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.10 gi|284176242|ref|YP_003406519.1| - 2.9e-13 50.0 4.3 2.9e-12 46.8 0.3 3.6 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.6 gi|284176242|ref|YP_003406519.1| - 3.2e-12 46.9 1.1 9.2e-12 45.4 0.2 2.3 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|284176242|ref|YP_003406519.1| - 0.00017 21.1 0.0 0.00099 18.6 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 GAF_3 PF13492.6 gi|284176242|ref|YP_003406519.1| - 0.0002 21.7 0.0 0.0005 20.4 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|284176242|ref|YP_003406519.1| - 0.00027 21.1 0.0 0.001 19.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain Sigma70_r4_2 PF08281.12 gi|284176242|ref|YP_003406519.1| - 0.00041 20.0 0.0 0.0016 18.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 PAS PF00989.25 gi|284176242|ref|YP_003406519.1| - 0.0054 16.7 0.0 0.017 15.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|284176242|ref|YP_003406519.1| - 0.011 16.3 0.0 0.034 14.8 0.0 1.9 1 0 0 1 1 1 0 GAF domain PAS_3 PF08447.12 gi|284176242|ref|YP_003406519.1| - 0.042 14.2 0.1 0.14 12.4 0.0 1.9 2 0 0 2 2 1 0 PAS fold Fer2 PF00111.27 gi|284176242|ref|YP_003406519.1| - 0.067 13.2 1.6 0.37 10.8 1.7 2.2 1 1 1 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain HTH_5 PF01022.20 gi|284176242|ref|YP_003406519.1| - 0.075 12.9 0.0 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284176242|ref|YP_003406519.1| - 0.081 13.0 0.0 0.33 11.0 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_M10 PF00413.24 gi|284176244|ref|YP_003406521.1| - 0.00012 22.0 0.0 0.00015 21.7 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|284176244|ref|YP_003406521.1| - 0.00074 19.7 0.1 0.0011 19.1 0.1 1.5 1 1 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|284176244|ref|YP_003406521.1| - 0.00083 18.4 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.6 gi|284176244|ref|YP_003406521.1| - 0.0016 19.0 0.0 0.0023 18.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|284176244|ref|YP_003406521.1| - 0.0018 18.2 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.24 gi|284176244|ref|YP_003406521.1| - 0.0019 17.8 0.0 0.003 17.2 0.0 1.2 1 0 0 1 1 1 1 Astacin (Peptidase family M12A) Reprolysin_4 PF13583.6 gi|284176244|ref|YP_003406521.1| - 0.0022 17.7 0.1 0.0032 17.2 0.1 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like DUF4953 PF16313.5 gi|284176244|ref|YP_003406521.1| - 0.014 14.6 0.1 0.021 14.1 0.1 1.1 1 0 0 1 1 1 0 Met-zincin Peptidase_M6 PF05547.11 gi|284176244|ref|YP_003406521.1| - 0.055 11.8 0.0 0.078 11.3 0.0 1.1 1 0 0 1 1 1 0 Immune inhibitor A peptidase M6 Peptidase_M43 PF05572.13 gi|284176244|ref|YP_003406521.1| - 0.081 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Metallopep PF12044.8 gi|284176244|ref|YP_003406521.1| - 0.083 11.5 0.2 0.11 11.0 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Zincin_1 PF06262.11 gi|284176244|ref|YP_003406521.1| - 0.17 12.0 0.4 0.35 11.0 0.4 1.4 1 0 0 1 1 1 0 Zincin-like metallopeptidase HTH_24 PF13412.6 gi|284176245|ref|YP_003406522.1| - 1.9e-08 33.7 0.0 3e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284176245|ref|YP_003406522.1| - 6.8e-05 22.6 0.0 9.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284176245|ref|YP_003406522.1| - 0.0013 18.6 0.0 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|284176245|ref|YP_003406522.1| - 0.0035 17.4 0.0 0.0064 16.6 0.0 1.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.6 gi|284176245|ref|YP_003406522.1| - 0.0095 15.7 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|284176245|ref|YP_003406522.1| - 0.016 15.3 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|284176245|ref|YP_003406522.1| - 0.018 15.0 0.0 0.023 14.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|284176245|ref|YP_003406522.1| - 0.019 14.9 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|284176245|ref|YP_003406522.1| - 0.099 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 MarR family Rio2_N PF09202.11 gi|284176245|ref|YP_003406522.1| - 0.16 12.2 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal Trehalose_PPase PF02358.16 gi|284176246|ref|YP_003406523.1| - 1.8e-43 148.3 0.0 2.2e-43 148.1 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase Glyco_transf_20 PF00982.21 gi|284176247|ref|YP_003406524.1| - 3e-114 382.3 0.0 3.4e-114 382.1 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_trans_1_4 PF13692.6 gi|284176247|ref|YP_003406524.1| - 0.014 15.8 0.0 0.028 14.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Peptidase_M24 PF00557.24 gi|284176248|ref|YP_003406525.1| - 6.1e-58 195.9 0.6 8.4e-58 195.5 0.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|284176248|ref|YP_003406525.1| - 1.3e-19 71.2 0.1 2.3e-19 70.3 0.1 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Cdc6_C PF09079.11 gi|284176249|ref|YP_003406526.1| - 1.5e-19 69.7 0.0 3.7e-19 68.5 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284176249|ref|YP_003406526.1| - 3.2e-15 56.6 0.1 1.3e-14 54.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284176249|ref|YP_003406526.1| - 3.1e-10 40.7 3.6 3.2e-10 40.7 0.6 2.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|284176249|ref|YP_003406526.1| - 2.2e-07 31.0 0.0 4.6e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|284176249|ref|YP_003406526.1| - 5.3e-06 26.4 0.0 1.2e-05 25.3 0.0 1.7 2 0 0 2 2 1 1 NACHT domain Sigma54_activat PF00158.26 gi|284176249|ref|YP_003406526.1| - 3e-05 23.8 0.0 5.4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|284176249|ref|YP_003406526.1| - 3.1e-05 24.4 0.3 0.00016 22.1 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|284176249|ref|YP_003406526.1| - 0.00027 20.4 0.0 0.00058 19.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein AAA_24 PF13479.6 gi|284176249|ref|YP_003406526.1| - 0.00042 20.1 0.0 0.00066 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|284176249|ref|YP_003406526.1| - 0.0031 16.7 0.0 0.005 16.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.6 gi|284176249|ref|YP_003406526.1| - 0.0035 17.5 0.0 0.017 15.3 0.0 2.0 1 1 1 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|284176249|ref|YP_003406526.1| - 0.0056 16.8 0.0 0.0094 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NB-ARC PF00931.22 gi|284176249|ref|YP_003406526.1| - 0.0067 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.9 gi|284176249|ref|YP_003406526.1| - 0.013 14.8 0.0 0.017 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Mg_chelatase PF01078.21 gi|284176249|ref|YP_003406526.1| - 0.014 14.8 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|284176249|ref|YP_003406526.1| - 0.028 14.8 0.0 0.055 13.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|284176249|ref|YP_003406526.1| - 0.035 14.2 1.4 0.046 13.8 0.1 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_assoc_2 PF16193.5 gi|284176249|ref|YP_003406526.1| - 0.037 14.3 0.2 0.62 10.5 0.2 2.4 1 1 1 2 2 2 0 AAA C-terminal domain MMR_HSR1 PF01926.23 gi|284176249|ref|YP_003406526.1| - 0.042 13.9 0.0 0.072 13.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|284176249|ref|YP_003406526.1| - 0.066 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|284176249|ref|YP_003406526.1| - 0.089 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_32 PF13654.6 gi|284176249|ref|YP_003406526.1| - 0.093 11.5 0.2 10 4.8 0.3 2.1 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|284176249|ref|YP_003406526.1| - 0.094 12.0 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family IstB_IS21 PF01695.17 gi|284176249|ref|YP_003406526.1| - 0.097 12.4 0.2 0.36 10.5 0.1 1.9 1 1 1 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.7 gi|284176249|ref|YP_003406526.1| - 0.11 11.4 0.0 0.6 9.0 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_18 PF13238.6 gi|284176249|ref|YP_003406526.1| - 0.12 12.9 0.0 0.32 11.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|284176249|ref|YP_003406526.1| - 0.12 11.8 0.8 8.6 5.8 0.0 2.5 2 1 0 2 2 2 0 PhoH-like protein KAP_NTPase PF07693.14 gi|284176249|ref|YP_003406526.1| - 0.12 11.6 0.3 7.1 5.8 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain DEAD PF00270.29 gi|284176249|ref|YP_003406526.1| - 0.21 11.4 2.1 17 5.1 2.1 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase zf-ribbon_3 PF13248.6 gi|284176250|ref|YP_003406527.1| - 0.00052 19.3 1.0 0.049 13.1 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|284176250|ref|YP_003406527.1| - 0.00086 19.2 1.4 0.18 11.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|284176250|ref|YP_003406527.1| - 0.0011 18.6 1.4 0.074 12.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|284176250|ref|YP_003406527.1| - 0.0062 16.6 1.2 0.83 9.8 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain UPF0547 PF10571.9 gi|284176250|ref|YP_003406527.1| - 0.0064 16.5 4.5 0.22 11.6 0.9 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|284176250|ref|YP_003406527.1| - 0.0076 16.3 1.5 0.013 15.5 1.5 1.4 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|284176250|ref|YP_003406527.1| - 0.011 15.6 1.6 1.6 8.7 0.1 2.3 2 1 0 2 2 2 0 Nudix N-terminal V4R PF02830.18 gi|284176250|ref|YP_003406527.1| - 0.016 15.2 0.3 0.047 13.7 0.0 1.7 2 0 0 2 2 2 0 V4R domain zf-LITAF-like PF10601.9 gi|284176250|ref|YP_003406527.1| - 0.024 14.9 0.5 3.5 8.0 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284176250|ref|YP_003406527.1| - 0.04 13.8 2.5 0.37 10.8 2.5 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-HYPF PF07503.12 gi|284176250|ref|YP_003406527.1| - 0.042 13.6 1.8 0.35 10.7 0.1 2.1 2 0 0 2 2 2 0 HypF finger A2L_zn_ribbon PF08792.10 gi|284176250|ref|YP_003406527.1| - 0.063 13.0 1.8 2.7 7.8 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|284176250|ref|YP_003406527.1| - 0.12 12.4 1.7 0.37 10.8 1.7 1.7 1 1 0 1 1 1 0 zinc-ribbons CpXC PF14353.6 gi|284176250|ref|YP_003406527.1| - 0.14 12.2 1.3 0.8 9.8 1.3 1.9 1 1 0 1 1 1 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|284176250|ref|YP_003406527.1| - 0.22 11.1 3.0 3.8 7.1 3.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|284176250|ref|YP_003406527.1| - 1 9.2 5.2 2.8 7.8 0.2 2.6 3 0 0 3 3 3 0 Rubredoxin metal binding domain Iron_transport PF10634.9 gi|284176251|ref|YP_003406528.1| - 0.00012 22.3 0.0 0.00087 19.5 0.0 2.2 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|284176251|ref|YP_003406528.1| - 0.0032 17.2 1.6 0.0054 16.5 1.6 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PPC PF04151.15 gi|284176251|ref|YP_003406528.1| - 0.078 14.1 0.0 0.39 11.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain SCO1-SenC PF02630.14 gi|284176252|ref|YP_003406529.1| - 1.2e-13 51.1 0.4 1.8e-12 47.3 0.1 2.1 2 0 0 2 2 2 1 SCO1/SenC Redoxin PF08534.10 gi|284176252|ref|YP_003406529.1| - 0.0016 18.1 0.0 0.038 13.7 0.0 2.2 2 0 0 2 2 2 1 Redoxin AhpC-TSA PF00578.21 gi|284176252|ref|YP_003406529.1| - 0.0019 18.1 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|284176253|ref|YP_003406530.1| - 1.2e-10 41.3 0.0 1.6e-10 40.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|284176253|ref|YP_003406530.1| - 2.9e-06 27.2 0.0 1.2e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin AhpC-TSA PF00578.21 gi|284176253|ref|YP_003406530.1| - 3.6e-06 26.9 0.0 4.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Se-cys_synth_N PF12390.8 gi|284176253|ref|YP_003406530.1| - 0.082 13.1 0.0 0.3 11.3 0.0 2.1 1 1 0 1 1 1 0 Selenocysteine synthase N terminal Thioredoxin_8 PF13905.6 gi|284176253|ref|YP_003406530.1| - 0.19 12.1 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like DsbD PF02683.15 gi|284176254|ref|YP_003406531.1| - 1.9e-09 37.7 15.1 2.6e-09 37.3 15.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region zf_C2H2_ZHX PF18387.1 gi|284176255|ref|YP_003406532.1| - 0.14 11.8 0.3 0.3 10.8 0.3 1.5 1 1 0 1 1 1 0 Zinc-fingers and homeoboxes C2H2 finger domain DEAD_assoc PF08494.11 gi|284176258|ref|YP_003406535.1| - 7.6e-35 120.4 0.5 2.2e-34 118.9 0.0 2.0 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|284176258|ref|YP_003406535.1| - 9.9e-29 100.3 0.0 2e-28 99.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|284176258|ref|YP_003406535.1| - 3.1e-22 79.0 0.0 2.1e-21 76.3 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|284176258|ref|YP_003406535.1| - 2.3e-07 31.0 0.0 4.6e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|284176258|ref|YP_003406535.1| - 9.8e-05 22.0 0.1 0.00034 20.3 0.1 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|284176258|ref|YP_003406535.1| - 0.00082 19.7 0.0 0.0056 17.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|284176258|ref|YP_003406535.1| - 0.018 14.5 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_22 PF13401.6 gi|284176258|ref|YP_003406535.1| - 0.024 14.9 0.7 0.68 10.2 0.7 2.8 1 1 0 1 1 1 0 AAA domain SNF2_N PF00176.23 gi|284176258|ref|YP_003406535.1| - 0.2 10.3 0.0 0.33 9.6 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain HATPase_c PF02518.26 gi|284176259|ref|YP_003406536.1| - 5.5e-28 97.7 0.0 3.1e-27 95.3 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|284176259|ref|YP_003406536.1| - 1.4e-22 79.8 0.0 1.7e-13 50.5 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|284176259|ref|YP_003406536.1| - 1.8e-18 66.8 0.1 6.7e-11 42.4 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|284176259|ref|YP_003406536.1| - 5.8e-16 58.6 0.0 4.5e-08 33.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|284176259|ref|YP_003406536.1| - 1.2e-12 48.3 0.5 4.5e-12 46.4 0.5 2.1 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|284176259|ref|YP_003406536.1| - 2e-12 46.8 0.1 1.3e-07 31.5 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF PF01590.26 gi|284176259|ref|YP_003406536.1| - 4.9e-11 43.4 0.1 1.3e-10 42.0 0.1 1.8 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|284176259|ref|YP_003406536.1| - 1.1e-09 38.2 4.0 2.5e-09 37.0 0.1 3.0 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|284176259|ref|YP_003406536.1| - 2.6e-09 37.2 0.0 0.00035 20.8 0.0 3.5 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.6 gi|284176259|ref|YP_003406536.1| - 2.4e-07 31.1 0.2 5.7e-06 26.7 0.0 2.5 1 1 1 2 2 2 1 GAF domain HATPase_c_5 PF14501.6 gi|284176259|ref|YP_003406536.1| - 0.00015 21.6 0.0 0.00028 20.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|284176259|ref|YP_003406536.1| - 0.00044 20.2 0.1 0.0018 18.2 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|284176259|ref|YP_003406536.1| - 0.021 14.7 0.0 0.064 13.1 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase bZIP_2 PF07716.15 gi|284176259|ref|YP_003406536.1| - 6.9 6.8 5.9 0.9 9.7 1.2 1.9 2 0 0 2 2 2 0 Basic region leucine zipper PS_Dcarbxylase PF02666.15 gi|284176260|ref|YP_003406537.1| - 4.2e-20 72.1 0.3 7.7e-16 58.2 0.0 2.9 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Biotin_lipoyl PF00364.22 gi|284176260|ref|YP_003406537.1| - 0.13 12.1 0.0 22 5.0 0.0 2.8 3 0 0 3 3 3 0 Biotin-requiring enzyme HTH_20 PF12840.7 gi|284176261|ref|YP_003406538.1| - 0.012 15.6 0.2 0.032 14.3 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|284176262|ref|YP_003406539.1| - 8.9e-11 41.5 1.9 2.9e-07 30.3 0.8 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|284176262|ref|YP_003406539.1| - 8.9e-09 35.1 0.1 7.2e-05 22.6 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|284176262|ref|YP_003406539.1| - 2.1e-07 31.2 0.0 0.01 16.1 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|284176262|ref|YP_003406539.1| - 2.2e-07 30.7 0.0 0.003 17.5 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|284176262|ref|YP_003406539.1| - 2.1e-06 27.4 0.0 0.095 12.5 0.0 2.8 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284176262|ref|YP_003406539.1| - 2.3e-06 28.0 0.7 9.7e-06 26.0 0.2 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|284176262|ref|YP_003406539.1| - 2.9e-05 23.5 0.1 0.075 12.6 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|284176262|ref|YP_003406539.1| - 5.3e-05 23.1 0.0 0.016 15.1 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_29 PF13551.6 gi|284176262|ref|YP_003406539.1| - 0.00013 22.0 0.4 0.035 14.1 0.1 2.6 2 0 0 2 2 2 1 Winged helix-turn helix HTH_36 PF13730.6 gi|284176262|ref|YP_003406539.1| - 0.004 17.1 0.0 1.6 8.8 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|284176262|ref|YP_003406539.1| - 0.0059 16.9 0.0 1.8 8.9 0.0 2.4 2 0 0 2 2 2 1 Penicillinase repressor HTH_28 PF13518.6 gi|284176262|ref|YP_003406539.1| - 0.011 15.8 3.8 0.91 9.7 0.1 3.7 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|284176262|ref|YP_003406539.1| - 0.012 15.3 0.1 0.3 10.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Crp PF00325.20 gi|284176262|ref|YP_003406539.1| - 0.014 15.0 0.1 0.91 9.2 0.1 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family DUF742 PF05331.11 gi|284176262|ref|YP_003406539.1| - 0.023 14.5 0.0 1.2 9.0 0.0 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF742) GntR PF00392.21 gi|284176262|ref|YP_003406539.1| - 0.037 13.7 0.1 6.8 6.4 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|284176262|ref|YP_003406539.1| - 0.038 14.1 0.1 3.2 7.9 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.23 gi|284176262|ref|YP_003406539.1| - 0.041 14.0 0.0 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family VAPB_antitox PF02697.14 gi|284176263|ref|YP_003406540.1| - 0.0032 18.2 0.5 0.0042 17.8 0.5 1.2 1 0 0 1 1 1 1 Putative antitoxin Effector_1 PF04518.12 gi|284176263|ref|YP_003406540.1| - 0.14 11.2 0.1 0.17 11.0 0.1 1.0 1 0 0 1 1 1 0 Effector from type III secretion system Response_reg PF00072.24 gi|284176264|ref|YP_003406541.1| - 3.4e-17 62.6 0.0 3.9e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Usp PF00582.26 gi|284176266|ref|YP_003406543.1| - 3.9e-06 27.4 0.4 5.5e-06 26.9 0.4 1.2 1 0 0 1 1 1 1 Universal stress protein family Mrr_N PF14338.6 gi|284176268|ref|YP_003406545.1| - 0.016 15.3 0.0 0.025 14.7 0.0 1.5 1 1 0 1 1 1 0 Mrr N-terminal domain DUF2161 PF09929.9 gi|284176268|ref|YP_003406545.1| - 0.024 14.7 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative PD-(D/E)XK phosphodiesterase (DUF2161) MarR PF01047.22 gi|284176268|ref|YP_003406545.1| - 0.06 13.3 0.0 0.083 12.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|284176268|ref|YP_003406545.1| - 0.091 12.8 0.0 0.17 11.9 0.0 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|284176268|ref|YP_003406545.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_45 PF14947.6 gi|284176268|ref|YP_003406545.1| - 0.16 12.0 0.0 0.16 12.0 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix FliT PF05400.13 gi|284176269|ref|YP_003406546.1| - 0.008 17.0 4.0 0.0091 16.8 3.5 1.4 1 1 0 1 1 1 1 Flagellar protein FliT PLN_propep PF16485.5 gi|284176269|ref|YP_003406546.1| - 0.011 15.4 0.6 0.021 14.5 0.1 1.7 2 0 0 2 2 2 0 Protealysin propeptide Apolipoprotein PF01442.18 gi|284176269|ref|YP_003406546.1| - 0.015 15.1 2.2 0.019 14.9 2.2 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain FUSC PF04632.12 gi|284176269|ref|YP_003406546.1| - 0.75 8.3 4.4 0.83 8.1 4.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Cep57_CLD_2 PF14197.6 gi|284176270|ref|YP_003406547.1| - 0.0013 18.7 9.4 0.0032 17.5 9.4 1.6 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 ERM PF00769.19 gi|284176270|ref|YP_003406547.1| - 0.0047 16.8 11.2 0.0047 16.8 11.2 1.5 2 0 0 2 2 1 1 Ezrin/radixin/moesin family DivIC PF04977.15 gi|284176270|ref|YP_003406547.1| - 0.0056 16.4 2.1 0.0056 16.4 2.1 2.7 2 1 1 3 3 2 2 Septum formation initiator TMF_TATA_bd PF12325.8 gi|284176270|ref|YP_003406547.1| - 0.0081 16.4 9.6 0.031 14.5 9.5 1.9 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding SHE3 PF17078.5 gi|284176270|ref|YP_003406547.1| - 0.01 15.6 5.1 0.01 15.6 5.1 1.9 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 CEP63 PF17045.5 gi|284176270|ref|YP_003406547.1| - 0.013 15.4 4.5 0.022 14.6 4.5 1.3 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa DUF4472 PF14739.6 gi|284176270|ref|YP_003406547.1| - 0.013 16.2 3.7 0.013 16.2 3.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4472) CtIP_N PF10482.9 gi|284176270|ref|YP_003406547.1| - 0.015 15.3 2.1 0.015 15.3 2.1 2.1 1 1 1 2 2 2 0 Tumour-suppressor protein CtIP N-terminal domain Spectrin PF00435.21 gi|284176270|ref|YP_003406547.1| - 0.021 15.3 5.2 0.3 11.6 3.8 2.8 2 1 1 3 3 3 0 Spectrin repeat Fmp27_WPPW PF10359.9 gi|284176270|ref|YP_003406547.1| - 0.024 13.5 5.0 0.034 13.0 5.0 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.8 gi|284176270|ref|YP_003406547.1| - 0.027 14.5 9.1 0.081 12.9 4.9 2.8 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding FTA4 PF13093.6 gi|284176270|ref|YP_003406547.1| - 0.036 13.9 3.1 0.081 12.8 3.1 1.7 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Jnk-SapK_ap_N PF09744.9 gi|284176270|ref|YP_003406547.1| - 0.039 14.2 10.8 0.083 13.1 10.8 1.5 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 CCDC106 PF15794.5 gi|284176270|ref|YP_003406547.1| - 0.044 13.5 4.0 0.084 12.6 4.0 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 Spc7 PF08317.11 gi|284176270|ref|YP_003406547.1| - 0.062 12.2 11.2 0.13 11.1 11.2 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein GAS PF13851.6 gi|284176270|ref|YP_003406547.1| - 0.095 12.0 7.9 0.19 11.1 7.9 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4795 PF16043.5 gi|284176270|ref|YP_003406547.1| - 0.11 12.1 5.1 2.2 7.8 5.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) MPS2 PF17060.5 gi|284176270|ref|YP_003406547.1| - 0.13 11.5 0.6 0.23 10.7 0.6 1.4 1 0 0 1 1 1 0 Monopolar spindle protein 2 Wtap PF17098.5 gi|284176270|ref|YP_003406547.1| - 0.16 11.9 7.7 0.18 11.8 6.6 1.7 2 0 0 2 2 1 0 WTAP/Mum2p family Atg14 PF10186.9 gi|284176270|ref|YP_003406547.1| - 0.27 10.3 2.4 0.57 9.2 2.4 1.5 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Osmo_CC PF08946.10 gi|284176270|ref|YP_003406547.1| - 0.3 11.4 4.8 3.1 8.1 0.8 2.6 2 0 0 2 2 2 0 Osmosensory transporter coiled coil V_ATPase_I PF01496.19 gi|284176270|ref|YP_003406547.1| - 0.33 8.8 3.2 0.42 8.5 3.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Nup54 PF13874.6 gi|284176270|ref|YP_003406547.1| - 0.39 10.8 6.6 1.1 9.3 6.6 1.7 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4407 PF14362.6 gi|284176270|ref|YP_003406547.1| - 0.48 9.7 10.2 0.82 9.0 10.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) BLOC1_2 PF10046.9 gi|284176270|ref|YP_003406547.1| - 0.54 10.6 5.8 4.2 7.7 3.9 2.7 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prefoldin_2 PF01920.20 gi|284176270|ref|YP_003406547.1| - 0.54 10.2 5.9 7.2 6.6 0.8 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF3450 PF11932.8 gi|284176270|ref|YP_003406547.1| - 1.1 8.5 7.6 3.4 6.9 2.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) ABC_tran_CTD PF16326.5 gi|284176270|ref|YP_003406547.1| - 1.1 9.5 15.3 0.32 11.3 7.1 2.6 1 1 1 2 2 2 0 ABC transporter C-terminal domain Med4 PF10018.9 gi|284176270|ref|YP_003406547.1| - 1.1 8.9 8.9 0.91 9.2 3.0 2.3 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Cnn_1N PF07989.11 gi|284176270|ref|YP_003406547.1| - 1.4 9.1 7.5 2.4 8.3 0.8 2.8 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 XhlA PF10779.9 gi|284176270|ref|YP_003406547.1| - 2 8.7 11.7 1.2 9.4 3.8 2.6 1 1 2 3 3 3 0 Haemolysin XhlA HAUS-augmin3 PF14932.6 gi|284176270|ref|YP_003406547.1| - 2.1 7.9 8.3 3.2 7.3 8.3 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 JIP_LZII PF16471.5 gi|284176270|ref|YP_003406547.1| - 2.9 8.1 9.6 9.4 6.5 3.1 2.6 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II ADIP PF11559.8 gi|284176270|ref|YP_003406547.1| - 3.1 7.9 12.4 1.1 9.3 3.0 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding bZIP_1 PF00170.21 gi|284176270|ref|YP_003406547.1| - 4.2 7.5 11.0 0.78 9.9 0.3 3.9 2 1 3 5 5 5 0 bZIP transcription factor Fez1 PF06818.15 gi|284176270|ref|YP_003406547.1| - 4.5 7.7 11.8 0.83 10.1 8.2 1.5 2 0 0 2 2 1 0 Fez1 DUF4140 PF13600.6 gi|284176270|ref|YP_003406547.1| - 5.2 7.6 10.6 1.3 9.5 0.9 2.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) APG6_N PF17675.1 gi|284176270|ref|YP_003406547.1| - 5.5 7.5 19.6 1.8 9.1 16.2 2.0 2 1 0 2 2 1 0 Apg6 coiled-coil region HAUS6_N PF14661.6 gi|284176270|ref|YP_003406547.1| - 6.5 6.3 6.3 16 5.0 6.3 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Spc24 PF08286.11 gi|284176270|ref|YP_003406547.1| - 8.2 6.7 12.6 3.1e+03 -1.6 12.6 2.8 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Cdc6_C PF09079.11 gi|284176271|ref|YP_003406548.1| - 1.3e-19 70.0 0.1 3.5e-19 68.6 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|284176271|ref|YP_003406548.1| - 1.7e-13 51.3 0.1 4.7e-13 49.9 0.1 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284176271|ref|YP_003406548.1| - 2.7e-08 34.2 0.0 5.3e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284176271|ref|YP_003406548.1| - 3.2e-05 24.4 0.1 0.00013 22.3 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|284176271|ref|YP_003406548.1| - 0.00014 21.8 0.0 0.00021 21.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|284176271|ref|YP_003406548.1| - 0.0034 17.1 0.6 0.013 15.2 0.0 2.2 3 0 0 3 3 3 1 Sigma-54 interaction domain DUF521 PF04412.13 gi|284176271|ref|YP_003406548.1| - 0.0046 15.7 0.0 0.01 14.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF521) DUF2791 PF10923.8 gi|284176271|ref|YP_003406548.1| - 0.013 14.3 0.0 0.029 13.2 0.0 1.6 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) ABC_tran PF00005.27 gi|284176271|ref|YP_003406548.1| - 0.018 15.6 0.0 0.04 14.4 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_assoc_2 PF16193.5 gi|284176271|ref|YP_003406548.1| - 0.022 15.1 0.1 0.079 13.3 0.1 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_32 PF13654.6 gi|284176271|ref|YP_003406548.1| - 0.04 12.7 0.7 0.17 10.6 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|284176271|ref|YP_003406548.1| - 0.065 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 gi|284176271|ref|YP_003406548.1| - 0.073 13.6 0.2 0.21 12.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|284176271|ref|YP_003406548.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein PCP_red PF08369.10 gi|284176271|ref|YP_003406548.1| - 0.21 11.9 4.5 0.28 11.4 0.3 3.3 3 1 1 4 4 4 0 Proto-chlorophyllide reductase 57 kD subunit DUF2508 PF10704.9 gi|284176271|ref|YP_003406548.1| - 0.52 10.5 4.8 1.6 8.9 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2508) Abhydrolase_3 PF07859.13 gi|284176272|ref|YP_003406549.1| - 8.8e-16 58.4 7.2 1.1e-07 32.0 3.8 2.9 2 1 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|284176272|ref|YP_003406549.1| - 1.4e-15 57.4 0.2 1.5e-10 40.9 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family COesterase PF00135.28 gi|284176272|ref|YP_003406549.1| - 1.4e-07 30.8 1.1 0.0039 16.1 0.7 2.0 2 0 0 2 2 2 2 Carboxylesterase family Peptidase_S15 PF02129.18 gi|284176272|ref|YP_003406549.1| - 0.00072 19.2 0.9 0.23 11.0 0.7 2.3 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|284176272|ref|YP_003406549.1| - 0.0015 17.8 0.1 0.028 13.7 0.0 2.2 2 0 0 2 2 2 1 Serine aminopeptidase, S33 FSH1 PF03959.13 gi|284176272|ref|YP_003406549.1| - 0.038 13.7 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DLH PF01738.18 gi|284176272|ref|YP_003406549.1| - 0.056 13.0 0.0 0.41 10.2 0.0 2.2 2 1 0 2 2 2 0 Dienelactone hydrolase family LEH PF07858.12 gi|284176272|ref|YP_003406549.1| - 0.092 12.8 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain Abhydrolase_2 PF02230.16 gi|284176272|ref|YP_003406549.1| - 0.17 11.7 0.0 0.57 9.9 0.0 1.8 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase TFIIB PF00382.19 gi|284176274|ref|YP_003406551.1| - 1.2e-36 124.6 0.1 6.3e-18 64.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|284176274|ref|YP_003406551.1| - 1.1e-16 60.1 3.4 2.2e-16 59.1 3.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|284176274|ref|YP_003406551.1| - 0.0012 18.6 0.0 0.0078 16.0 0.0 2.1 2 0 0 2 2 2 1 Cyclin, N-terminal domain Ribosomal_S27e PF01667.17 gi|284176274|ref|YP_003406551.1| - 0.014 15.1 0.2 0.034 13.9 0.2 1.6 1 0 0 1 1 1 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|284176274|ref|YP_003406551.1| - 0.097 12.4 0.2 0.23 11.2 0.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain GATA PF00320.27 gi|284176274|ref|YP_003406551.1| - 0.44 10.2 2.2 5.8 6.6 0.3 2.7 2 1 0 2 2 2 0 GATA zinc finger HTH_20 PF12840.7 gi|284176275|ref|YP_003406552.1| - 0.0012 18.8 0.2 0.0083 16.2 0.2 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain Acyl-CoA_dh_C PF12806.7 gi|284176275|ref|YP_003406552.1| - 0.0044 17.2 0.0 0.0096 16.1 0.0 1.5 1 0 0 1 1 1 1 Acetyl-CoA dehydrogenase C-terminal like DUF2398 PF09661.10 gi|284176275|ref|YP_003406552.1| - 0.0044 16.3 0.3 0.0068 15.7 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2398) 7TMR-DISM_7TM PF07695.11 gi|284176275|ref|YP_003406552.1| - 0.0096 15.8 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 1 7TM diverse intracellular signalling Thymopoietin PF08198.11 gi|284176275|ref|YP_003406552.1| - 0.012 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Thymopoietin protein HTH_11 PF08279.12 gi|284176275|ref|YP_003406552.1| - 0.052 13.5 0.1 0.11 12.5 0.1 1.5 1 0 0 1 1 1 0 HTH domain VIT1 PF01988.19 gi|284176275|ref|YP_003406552.1| - 0.059 13.2 0.0 0.085 12.7 0.0 1.3 1 1 0 1 1 1 0 VIT family Glycos_transf_1 PF00534.20 gi|284176276|ref|YP_003406553.1| - 7.4e-39 133.0 0.0 1.5e-38 132.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284176276|ref|YP_003406553.1| - 3.2e-32 111.8 0.0 2.5e-31 108.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|284176276|ref|YP_003406553.1| - 1.8e-13 50.7 1.2 2.8e-13 50.0 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|284176276|ref|YP_003406553.1| - 4.2e-12 46.4 0.0 9.6e-12 45.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|284176276|ref|YP_003406553.1| - 0.00011 22.7 0.2 0.00011 22.7 0.2 2.4 1 1 0 2 2 2 1 Glycosyl transferase 4-like domain DUF4957 PF16318.5 gi|284176277|ref|YP_003406554.1| - 0.0015 18.5 1.3 0.0051 16.8 0.0 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4957) TAT_signal PF10518.9 gi|284176277|ref|YP_003406554.1| - 0.011 15.5 2.9 0.023 14.5 2.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|284176277|ref|YP_003406554.1| - 0.013 15.3 8.4 0.23 11.3 2.9 3.2 2 1 1 3 3 3 0 Right handed beta helix region DUF2678 PF10856.8 gi|284176279|ref|YP_003406556.1| - 1.3 9.0 5.3 0.2 11.6 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2678) Acetyltransf_9 PF13527.7 gi|284176282|ref|YP_003406559.1| - 5.3e-17 62.1 0.0 1.2e-16 60.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|284176282|ref|YP_003406559.1| - 0.0051 17.0 0.0 0.092 13.0 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|284176282|ref|YP_003406559.1| - 0.12 12.9 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Phosphodiest PF01663.22 gi|284176283|ref|YP_003406560.1| - 3.1e-47 161.9 0.9 4.1e-46 158.2 0.9 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1859 PF08948.10 gi|284176283|ref|YP_003406560.1| - 0.038 13.9 0.2 0.17 11.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1859) Polysacc_deac_1 PF01522.21 gi|284176284|ref|YP_003406561.1| - 2.2e-08 34.0 0.0 5.7e-08 32.7 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase GFO_IDH_MocA PF01408.22 gi|284176285|ref|YP_003406562.1| - 2e-24 86.7 0.1 3.9e-24 85.8 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284176285|ref|YP_003406562.1| - 1.3e-07 31.6 0.0 3.8e-07 30.1 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Sacchrp_dh_NADP PF03435.18 gi|284176285|ref|YP_003406562.1| - 0.027 14.7 0.1 0.061 13.6 0.1 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 gi|284176285|ref|YP_003406562.1| - 0.042 14.3 0.2 0.083 13.4 0.2 1.5 1 0 0 1 1 1 0 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|284176285|ref|YP_003406562.1| - 0.08 12.3 0.1 0.8 9.0 0.0 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|284176285|ref|YP_003406562.1| - 0.13 12.9 0.0 0.34 11.6 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain DUF362 PF04015.12 gi|284176286|ref|YP_003406563.1| - 0.024 14.9 0.0 0.096 12.9 0.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF362) Epimerase PF01370.21 gi|284176287|ref|YP_003406564.1| - 1.6e-31 109.7 0.0 5.3e-31 107.9 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284176287|ref|YP_003406564.1| - 3.4e-26 91.9 0.0 4.6e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|284176287|ref|YP_003406564.1| - 9.5e-20 71.2 0.0 4.3e-19 69.1 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|284176287|ref|YP_003406564.1| - 2.3e-19 70.0 0.0 3.4e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|284176287|ref|YP_003406564.1| - 1.2e-16 60.7 0.0 5.7e-10 38.8 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|284176287|ref|YP_003406564.1| - 1.8e-12 46.9 0.0 3.1e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|284176287|ref|YP_003406564.1| - 6e-07 29.3 0.0 9.4e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|284176287|ref|YP_003406564.1| - 4.5e-06 26.0 0.0 4.2e-05 22.8 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|284176287|ref|YP_003406564.1| - 0.02 14.3 0.0 0.055 12.9 0.0 1.9 1 1 0 1 1 1 0 short chain dehydrogenase Glyco_trans_1_4 PF13692.6 gi|284176288|ref|YP_003406565.1| - 1.1e-10 42.1 0.0 2e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|284176288|ref|YP_003406565.1| - 4.2e-09 37.0 1.5 9.8e-09 35.8 1.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|284176288|ref|YP_003406565.1| - 3e-08 33.9 0.1 7e-08 32.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|284176288|ref|YP_003406565.1| - 4.3e-08 32.9 0.0 6.7e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|284176288|ref|YP_003406565.1| - 0.00053 20.0 0.0 0.0017 18.4 0.0 1.7 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|284176288|ref|YP_003406565.1| - 0.11 13.0 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF354 PF04007.12 gi|284176289|ref|YP_003406566.1| - 9.1e-11 41.4 0.0 2.3e-10 40.1 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.6 gi|284176289|ref|YP_003406566.1| - 7.6e-05 23.2 2.0 0.00016 22.1 0.5 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|284176289|ref|YP_003406566.1| - 0.00026 21.0 0.1 0.00054 20.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 LpxB PF02684.15 gi|284176289|ref|YP_003406566.1| - 0.093 11.6 0.0 0.18 10.6 0.0 1.4 2 0 0 2 2 2 0 Lipid-A-disaccharide synthetase Usp PF00582.26 gi|284176290|ref|YP_003406567.1| - 7.1e-37 127.1 4.1 7.9e-37 126.9 4.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|284176290|ref|YP_003406567.1| - 0.002 17.6 0.5 0.003 17.0 0.2 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel SIMPL PF04402.14 gi|284176290|ref|YP_003406567.1| - 0.0062 17.0 0.5 0.0088 16.5 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF2563 PF10817.8 gi|284176290|ref|YP_003406567.1| - 0.066 13.8 0.8 2.3 8.8 0.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2563) Toprim_3 PF13362.6 gi|284176290|ref|YP_003406567.1| - 0.079 13.3 0.8 0.23 11.9 0.3 1.9 1 1 1 2 2 2 0 Toprim domain BAT PF15915.5 gi|284176291|ref|YP_003406568.1| - 9e-42 142.6 16.9 9e-42 142.6 16.9 5.7 4 1 1 5 5 5 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|284176291|ref|YP_003406568.1| - 3e-17 62.2 0.0 6.9e-17 61.0 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|284176291|ref|YP_003406568.1| - 2.9e-13 50.0 12.7 5.7e-05 23.3 0.1 4.8 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|284176291|ref|YP_003406568.1| - 3.4e-10 40.1 0.0 1.5e-09 38.0 0.0 2.1 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.6 gi|284176291|ref|YP_003406568.1| - 7.6e-09 36.0 2.1 0.00025 21.4 0.5 3.2 2 0 0 2 2 2 2 GAF domain GAF_2 PF13185.6 gi|284176291|ref|YP_003406568.1| - 2e-08 34.6 20.8 2.4e-07 31.1 0.9 4.5 4 0 0 4 4 4 2 GAF domain PAS PF00989.25 gi|284176291|ref|YP_003406568.1| - 6.3e-08 32.6 0.0 1.8e-05 24.7 0.0 3.0 3 0 0 3 3 3 1 PAS fold GAF PF01590.26 gi|284176291|ref|YP_003406568.1| - 1.9e-06 28.5 1.1 0.00026 21.6 0.0 3.3 3 0 0 3 3 3 1 GAF domain PAS_9 PF13426.7 gi|284176291|ref|YP_003406568.1| - 0.00062 20.0 0.0 0.037 14.3 0.0 3.1 4 0 0 4 4 4 1 PAS domain HTH_5 PF01022.20 gi|284176291|ref|YP_003406568.1| - 0.01 15.7 0.0 0.029 14.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PAS_8 PF13188.7 gi|284176291|ref|YP_003406568.1| - 0.017 15.1 0.3 2.2 8.4 0.0 3.4 3 0 0 3 3 3 0 PAS domain Sigma70_ECF PF07638.11 gi|284176291|ref|YP_003406568.1| - 0.023 14.6 0.1 0.059 13.3 0.1 1.7 1 0 0 1 1 1 0 ECF sigma factor HTH_24 PF13412.6 gi|284176291|ref|YP_003406568.1| - 0.16 11.6 0.0 0.48 10.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_10 PF04967.12 gi|284176292|ref|YP_003406569.1| - 4e-19 68.2 0.0 8.2e-19 67.2 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284176292|ref|YP_003406569.1| - 6.9e-15 55.3 5.7 9.6e-15 54.8 4.1 1.9 1 1 1 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|284176292|ref|YP_003406569.1| - 1.1e-06 28.0 0.1 2.6e-06 26.8 0.1 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|284176292|ref|YP_003406569.1| - 2e-06 27.2 0.1 4.5e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284176292|ref|YP_003406569.1| - 3.1e-06 27.0 0.0 7.4e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|284176292|ref|YP_003406569.1| - 4.1e-05 23.5 0.0 8.9e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|284176292|ref|YP_003406569.1| - 0.00034 20.2 0.2 0.0015 18.2 0.2 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|284176292|ref|YP_003406569.1| - 0.0004 20.1 0.2 0.00098 18.9 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 gi|284176292|ref|YP_003406569.1| - 0.00097 19.2 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_31 PF13560.6 gi|284176292|ref|YP_003406569.1| - 0.002 18.4 0.6 0.015 15.7 0.1 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284176292|ref|YP_003406569.1| - 0.0029 17.5 0.0 0.011 15.7 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|284176292|ref|YP_003406569.1| - 0.0031 17.4 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|284176292|ref|YP_003406569.1| - 0.0048 16.7 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_50 PF18024.1 gi|284176292|ref|YP_003406569.1| - 0.015 14.9 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|284176292|ref|YP_003406569.1| - 0.023 14.6 0.2 0.038 13.9 0.2 1.5 1 1 0 1 1 1 0 ECF sigma factor MarR PF01047.22 gi|284176292|ref|YP_003406569.1| - 0.024 14.6 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family P22_Cro PF14549.6 gi|284176292|ref|YP_003406569.1| - 0.024 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|284176292|ref|YP_003406569.1| - 0.03 14.2 0.0 0.069 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Fe_dep_repress PF01325.19 gi|284176292|ref|YP_003406569.1| - 0.04 14.1 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|284176292|ref|YP_003406569.1| - 0.04 13.8 0.2 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_37 PF13744.6 gi|284176292|ref|YP_003406569.1| - 0.068 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|284176292|ref|YP_003406569.1| - 0.083 13.2 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_1 PF00126.27 gi|284176292|ref|YP_003406569.1| - 0.1 12.6 0.1 0.3 11.1 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family UPF0122 PF04297.14 gi|284176292|ref|YP_003406569.1| - 0.12 12.6 0.0 0.3 11.4 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_36 PF13730.6 gi|284176292|ref|YP_003406569.1| - 0.13 12.2 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Pilin_N PF07790.11 gi|284176295|ref|YP_003406571.1| - 4.3e-16 59.6 5.2 4.3e-16 59.6 5.2 2.3 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Sulfatase PF00884.23 gi|284176297|ref|YP_003406573.1| - 0.0022 17.4 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Methyltransf_21 PF05050.12 gi|284176299|ref|YP_003406575.1| - 0.015 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase FkbM domain Bac_DNA_binding PF00216.21 gi|284176299|ref|YP_003406575.1| - 0.057 13.6 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial DNA-binding protein PrmA PF06325.13 gi|284176299|ref|YP_003406575.1| - 0.097 12.0 0.2 0.15 11.5 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2235 PF09994.9 gi|284176299|ref|YP_003406575.1| - 0.1 11.9 0.0 0.26 10.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) CarboxypepD_reg PF13620.6 gi|284176302|ref|YP_003406578.1| - 0.0069 16.6 8.8 0.64 10.3 0.1 4.2 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.21 gi|284176302|ref|YP_003406578.1| - 0.041 13.3 0.8 0.11 12.0 0.2 2.0 2 0 0 2 2 2 0 Dioxygenase CARDB PF07705.11 gi|284176302|ref|YP_003406578.1| - 0.86 9.9 5.1 16 5.8 3.1 3.5 3 0 0 3 3 3 0 CARDB Peptidase_S8 PF00082.22 gi|284176303|ref|YP_003406579.1| - 1.6e-25 90.0 3.8 2.3e-25 89.5 3.8 1.2 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|284176303|ref|YP_003406579.1| - 0.033 14.0 1.0 0.033 14.0 1.0 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_4 PF13407.6 gi|284176303|ref|YP_003406579.1| - 0.089 12.3 0.1 0.44 10.1 0.0 1.9 2 0 0 2 2 2 0 Periplasmic binding protein domain Sec23_trunk PF04811.15 gi|284176308|ref|YP_003406584.1| - 0.026 14.1 0.2 0.15 11.6 0.1 2.0 2 0 0 2 2 2 0 Sec23/Sec24 trunk domain LptE PF04390.12 gi|284176309|ref|YP_003406585.1| - 0.15 12.8 0.1 0.24 12.1 0.1 1.3 1 1 0 1 1 1 0 Lipopolysaccharide-assembly PSII PF00421.19 gi|284176310|ref|YP_003406586.1| - 0.0041 15.9 0.3 0.0043 15.8 0.3 1.0 1 0 0 1 1 1 1 Photosystem II protein Phage_holin_3_6 PF07332.11 gi|284176310|ref|YP_003406586.1| - 0.042 13.9 0.1 0.048 13.7 0.1 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF5395 PF17373.2 gi|284176311|ref|YP_003406587.1| - 0.14 12.8 0.1 0.27 11.9 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5395) PrgI PF12666.7 gi|284176313|ref|YP_003406589.1| - 0.056 14.2 1.5 0.067 13.9 0.4 1.7 2 0 0 2 2 2 0 PrgI family protein DUF2685 PF10886.8 gi|284176314|ref|YP_003406590.1| - 0.05 13.8 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2685) DUF2207 PF09972.9 gi|284176316|ref|YP_003406592.1| - 0.33 9.7 1.9 0.33 9.7 1.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AA_permease PF00324.21 gi|284176319|ref|YP_003406595.1| - 0.022 13.4 0.1 2.1 6.8 0.0 1.9 2 0 0 2 2 2 0 Amino acid permease TMF_TATA_bd PF12325.8 gi|284176319|ref|YP_003406595.1| - 0.07 13.4 4.7 0.13 12.5 4.7 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF2101 PF09874.9 gi|284176319|ref|YP_003406595.1| - 0.41 10.3 1.2 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2101) DUF3153 PF11353.8 gi|284176319|ref|YP_003406595.1| - 0.48 10.0 1.7 1.2 8.7 1.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) MRC1 PF09444.10 gi|284176319|ref|YP_003406595.1| - 1.5 9.3 6.9 2.8 8.4 6.9 1.3 1 0 0 1 1 1 0 MRC1-like domain VPDSG-CTERM PF18205.1 gi|284176320|ref|YP_003406596.1| - 0.052 13.4 1.1 0.14 12.0 1.1 1.7 1 0 0 1 1 1 0 VPDSG-CTERM motif GYR PF02756.14 gi|284176321|ref|YP_003406597.1| - 0.27 11.0 0.1 0.27 11.0 0.1 2.4 2 0 0 2 2 2 0 GYR motif MCM_OB PF17207.3 gi|284176323|ref|YP_003406599.1| - 1.2e-16 60.6 0.0 2.2e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_N PF14551.6 gi|284176323|ref|YP_003406599.1| - 0.0004 20.9 0.0 0.00087 19.8 0.0 1.5 1 0 0 1 1 1 1 MCM N-terminal domain DUF2399 PF09664.10 gi|284176324|ref|YP_003406600.1| - 0.064 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HHH_5 PF14520.6 gi|284176326|ref|YP_003406602.1| - 2.8e-08 34.3 0.1 5.5e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|284176326|ref|YP_003406602.1| - 4.3e-07 29.9 0.1 6.6e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|284176326|ref|YP_003406602.1| - 0.0064 16.3 0.1 0.026 14.4 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif SHOCT PF09851.9 gi|284176326|ref|YP_003406602.1| - 0.0071 16.1 1.8 0.0071 16.1 1.8 2.2 2 0 0 2 2 2 1 Short C-terminal domain 5_3_exonuc PF01367.20 gi|284176326|ref|YP_003406602.1| - 0.11 13.1 0.0 20 5.9 0.0 2.4 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HTH_24 PF13412.6 gi|284176327|ref|YP_003406603.1| - 9.8e-05 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|284176327|ref|YP_003406603.1| - 0.00045 20.1 0.0 0.00068 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|284176327|ref|YP_003406603.1| - 0.0036 17.1 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|284176327|ref|YP_003406603.1| - 0.0087 15.9 0.2 0.019 14.8 0.0 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|284176327|ref|YP_003406603.1| - 0.04 13.8 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|284176327|ref|YP_003406603.1| - 0.084 12.4 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Mrr_cat PF04471.12 gi|284176328|ref|YP_003406604.1| - 5.7e-31 106.9 0.2 8.3e-31 106.4 0.2 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|284176328|ref|YP_003406604.1| - 1e-24 86.8 2.0 1.6e-24 86.3 2.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease HAD PF12710.7 gi|284176328|ref|YP_003406604.1| - 0.086 13.2 0.0 0.43 11.0 0.0 1.9 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase KAP_NTPase PF07693.14 gi|284176329|ref|YP_003406605.1| - 4.5e-28 98.4 0.0 2.3e-27 96.1 0.0 2.3 2 0 0 2 2 2 1 KAP family P-loop domain AAA_22 PF13401.6 gi|284176329|ref|YP_003406605.1| - 0.00015 22.0 0.8 0.037 14.3 0.0 4.2 4 1 0 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|284176329|ref|YP_003406605.1| - 0.0018 18.7 0.2 0.061 13.7 0.0 3.6 4 2 0 4 4 4 1 AAA ATPase domain AAA PF00004.29 gi|284176329|ref|YP_003406605.1| - 0.022 15.2 0.0 9.8 6.6 0.0 3.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|284176329|ref|YP_003406605.1| - 0.026 14.6 8.8 0.99 9.4 0.0 4.3 3 1 2 5 5 5 0 Helicase HerA, central domain ABC_tran PF00005.27 gi|284176329|ref|YP_003406605.1| - 0.079 13.5 0.0 0.079 13.5 0.0 3.7 5 1 0 5 5 5 0 ABC transporter DUF3800 PF12686.7 gi|284176329|ref|YP_003406605.1| - 0.079 13.6 0.0 13 6.5 0.0 3.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) SANT_DAMP1_like PF16282.5 gi|284176329|ref|YP_003406605.1| - 0.2 11.9 4.3 0.1 12.8 0.5 2.6 3 0 0 3 3 3 0 SANT/Myb-like domain of DAMP1 AAA_18 PF13238.6 gi|284176329|ref|YP_003406605.1| - 1.7 9.2 4.3 12 6.4 0.0 4.2 5 1 1 6 6 6 0 AAA domain Phage_integrase PF00589.22 gi|284176330|ref|YP_003406606.1| - 9.8e-13 48.3 0.2 5.4e-12 45.8 0.2 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|284176330|ref|YP_003406606.1| - 1.5e-05 25.3 0.0 3e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284176330|ref|YP_003406606.1| - 0.0024 18.1 0.0 0.0078 16.5 0.0 2.0 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Chitin_bind_4 PF00379.23 gi|284176330|ref|YP_003406606.1| - 0.14 12.7 0.0 8.5 7.0 0.0 2.7 2 0 0 2 2 2 0 Insect cuticle protein DUF1707 PF08044.11 gi|284176331|ref|YP_003406607.1| - 0.0029 17.6 0.3 0.0047 17.0 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) SHOCT PF09851.9 gi|284176331|ref|YP_003406607.1| - 0.015 15.0 0.7 0.027 14.2 0.7 1.4 1 0 0 1 1 1 0 Short C-terminal domain VbhA PF18495.1 gi|284176331|ref|YP_003406607.1| - 0.025 14.5 0.5 0.037 13.9 0.5 1.3 1 0 0 1 1 1 0 Antitoxin VbhA DUF3996 PF13161.6 gi|284176332|ref|YP_003406608.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) DUF2093 PF09866.9 gi|284176334|ref|YP_003406610.1| - 0.0014 18.0 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2093) Zn-ribbon_8 PF09723.10 gi|284176335|ref|YP_003406611.1| - 0.00039 20.5 1.3 0.13 12.4 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284176335|ref|YP_003406611.1| - 0.0053 16.6 1.3 0.0085 16.0 1.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|284176335|ref|YP_003406611.1| - 0.0087 16.0 1.0 0.012 15.5 1.0 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|284176335|ref|YP_003406611.1| - 0.012 15.0 2.9 0.12 11.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|284176335|ref|YP_003406611.1| - 0.014 15.4 1.6 0.36 10.9 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin Lar_restr_allev PF14354.6 gi|284176335|ref|YP_003406611.1| - 0.016 15.6 0.3 0.02 15.2 0.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|284176335|ref|YP_003406611.1| - 0.016 14.7 2.7 0.23 11.0 2.4 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|284176335|ref|YP_003406611.1| - 0.022 14.4 1.7 0.86 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|284176335|ref|YP_003406611.1| - 0.097 13.3 2.0 1.5 9.6 0.7 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin_2 PF18073.1 gi|284176335|ref|YP_003406611.1| - 0.11 12.2 3.8 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Auto_anti-p27 PF06677.12 gi|284176335|ref|YP_003406611.1| - 0.12 12.5 0.9 3 8.1 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|284176335|ref|YP_003406611.1| - 0.13 12.3 1.4 2.9 8.0 0.0 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_5 PF13719.6 gi|284176335|ref|YP_003406611.1| - 0.14 11.9 1.0 12 5.7 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|284176335|ref|YP_003406611.1| - 0.14 12.3 4.4 1.9 8.7 4.4 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.9 gi|284176335|ref|YP_003406611.1| - 0.14 12.3 4.8 0.53 10.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|284176335|ref|YP_003406611.1| - 0.15 12.0 5.8 2.6 8.0 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2387 PF09526.10 gi|284176335|ref|YP_003406611.1| - 0.16 12.1 1.2 0.23 11.6 1.2 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) eIF-5_eIF-2B PF01873.17 gi|284176335|ref|YP_003406611.1| - 0.19 11.6 0.3 0.26 11.2 0.3 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-H2C2_2 PF13465.6 gi|284176335|ref|YP_003406611.1| - 0.64 10.5 3.0 1.7 9.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain ADK_lid PF05191.14 gi|284176335|ref|YP_003406611.1| - 0.9 9.6 6.5 1.8 8.6 0.0 2.6 3 0 0 3 3 3 0 Adenylate kinase, active site lid SPOR PF05036.13 gi|284176340|ref|YP_003406616.1| - 0.0014 18.9 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 2 Sporulation related domain zf-BED PF02892.15 gi|284176340|ref|YP_003406616.1| - 0.12 12.4 0.3 0.29 11.2 0.0 1.7 2 0 0 2 2 2 0 BED zinc finger COP23 PF14218.6 gi|284176341|ref|YP_003406617.1| - 0.077 12.8 0.0 0.098 12.4 0.0 1.1 1 0 0 1 1 1 0 Circadian oscillating protein COP23 HIRAN PF08797.11 gi|284176342|ref|YP_003406618.1| - 0.053 13.4 0.0 0.067 13.1 0.0 1.1 1 0 0 1 1 1 0 HIRAN domain Phage_holin_2_4 PF16082.5 gi|284176345|ref|YP_003406621.1| - 0.016 15.0 0.6 0.021 14.6 0.6 1.3 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like Trp_oprn_chp PF09534.10 gi|284176345|ref|YP_003406621.1| - 0.045 13.5 1.8 0.079 12.7 1.8 1.5 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3180 PF11377.8 gi|284176345|ref|YP_003406621.1| - 6.1 7.0 13.6 0.21 11.7 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) N6-adenineMlase PF10237.9 gi|284176350|ref|YP_003406626.1| - 0.05 13.4 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Phage_G PF02306.15 gi|284176350|ref|YP_003406626.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Major spike protein (G protein) Pilin_N PF07790.11 gi|284176351|ref|YP_003406627.1| - 1.3e-14 54.9 2.0 2.7e-14 53.8 2.0 1.5 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal MDMPI_N PF11716.8 gi|284176352|ref|YP_003406628.1| - 0.4 11.4 7.5 0.074 13.7 4.2 1.5 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain AAA_31 PF13614.6 gi|284176353|ref|YP_003406629.1| - 8.2e-19 68.2 0.0 1.1e-18 67.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284176353|ref|YP_003406629.1| - 1.7e-08 34.6 0.0 2.1e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|284176353|ref|YP_003406629.1| - 7.9e-05 22.1 0.0 0.17 11.1 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|284176353|ref|YP_003406629.1| - 0.022 13.9 0.9 0.07 12.3 0.8 2.0 2 1 0 2 2 2 0 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|284176353|ref|YP_003406629.1| - 0.036 13.5 0.0 6.8 6.1 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284176353|ref|YP_003406629.1| - 0.1 12.0 0.0 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase CxC7 PF18866.1 gi|284176355|ref|YP_003406631.1| - 0.046 13.9 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 CxC7 like cysteine cluster associated with KDZ transposases OrfB_Zn_ribbon PF07282.11 gi|284176355|ref|YP_003406631.1| - 0.089 12.7 0.3 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|284176355|ref|YP_003406631.1| - 1.8 8.9 4.8 4.9 7.5 4.8 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Prok-RING_1 PF14446.6 gi|284176358|ref|YP_003406634.1| - 0.021 14.8 0.1 0.025 14.5 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|284176359|ref|YP_003406635.1| - 0.00015 21.0 2.8 0.013 14.8 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|284176359|ref|YP_003406635.1| - 0.00086 19.3 0.8 0.001 19.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284176359|ref|YP_003406635.1| - 0.0022 18.0 1.2 0.018 15.2 0.2 2.0 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|284176359|ref|YP_003406635.1| - 0.0027 17.6 4.5 0.09 12.8 1.8 2.0 1 1 1 2 2 2 2 Transposase zinc-ribbon domain RNHCP PF12647.7 gi|284176359|ref|YP_003406635.1| - 0.0065 16.4 0.6 0.0066 16.4 0.6 1.0 1 0 0 1 1 1 1 RNHCP domain C1_1 PF00130.22 gi|284176359|ref|YP_003406635.1| - 0.0092 15.8 0.4 0.01 15.7 0.4 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-CHCC PF10276.9 gi|284176359|ref|YP_003406635.1| - 0.011 15.7 0.4 3 8.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-ISL3 PF14690.6 gi|284176359|ref|YP_003406635.1| - 0.011 16.3 2.1 0.28 11.9 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|284176359|ref|YP_003406635.1| - 0.012 15.3 5.7 0.033 13.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.12 gi|284176359|ref|YP_003406635.1| - 0.013 15.3 2.2 0.098 12.4 0.2 2.0 2 0 0 2 2 2 0 HypF finger Ogr_Delta PF04606.12 gi|284176359|ref|YP_003406635.1| - 0.019 14.9 3.4 0.23 11.5 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.9 gi|284176359|ref|YP_003406635.1| - 0.021 14.9 1.8 0.68 10.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Glutaredoxin PF00462.24 gi|284176359|ref|YP_003406635.1| - 0.024 14.9 4.0 0.63 10.3 0.3 2.0 1 1 1 2 2 2 0 Glutaredoxin zf-Di19 PF05605.12 gi|284176359|ref|YP_003406635.1| - 0.026 14.8 5.5 0.27 11.5 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C3HC4_3 PF13920.6 gi|284176359|ref|YP_003406635.1| - 0.038 13.9 1.8 0.39 10.6 1.8 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_7 PF02591.15 gi|284176359|ref|YP_003406635.1| - 0.038 14.2 4.0 0.33 11.2 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Molybdop_Fe4S4 PF04879.16 gi|284176359|ref|YP_003406635.1| - 0.042 13.8 3.2 1.3 9.1 0.3 2.1 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain zf-ACC PF17848.1 gi|284176359|ref|YP_003406635.1| - 0.048 13.7 1.7 0.45 10.6 0.1 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|284176359|ref|YP_003406635.1| - 0.048 13.7 0.6 0.049 13.7 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_CPXG PF14255.6 gi|284176359|ref|YP_003406635.1| - 0.063 13.2 5.7 0.12 12.2 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-C2H2_4 PF13894.6 gi|284176359|ref|YP_003406635.1| - 0.067 14.1 1.3 4.3 8.5 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|284176359|ref|YP_003406635.1| - 0.099 12.7 0.2 0.099 12.7 0.2 1.9 1 1 1 2 2 2 0 CpXC protein Lar_restr_allev PF14354.6 gi|284176359|ref|YP_003406635.1| - 0.11 12.9 2.8 0.23 11.9 2.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|284176359|ref|YP_003406635.1| - 0.11 12.0 2.5 1.4 8.5 0.2 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 gi|284176359|ref|YP_003406635.1| - 0.23 11.8 5.9 0.42 10.9 0.6 2.1 1 1 1 2 2 2 0 zinc-ribbon NRDD PF13597.6 gi|284176359|ref|YP_003406635.1| - 0.26 10.0 0.8 0.27 10.0 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TerY_C PF15616.6 gi|284176359|ref|YP_003406635.1| - 0.31 11.1 3.6 1.1 9.4 3.6 1.8 1 1 0 1 1 1 0 TerY-C metal binding domain DUF3470 PF11953.8 gi|284176360|ref|YP_003406636.1| - 0.095 12.7 2.0 1.6 8.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3470) zinc_ribbon_10 PF10058.9 gi|284176361|ref|YP_003406637.1| - 0.00017 21.2 0.0 0.0045 16.7 0.1 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein DUF2310 PF10071.9 gi|284176361|ref|YP_003406637.1| - 0.14 11.4 0.7 0.19 10.9 0.7 1.2 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) DUF150_C PF17384.2 gi|284176362|ref|YP_003406638.1| - 0.051 13.7 0.1 0.099 12.8 0.1 1.5 1 0 0 1 1 1 0 RimP C-terminal SH3 domain PadR PF03551.14 gi|284176363|ref|YP_003406639.1| - 7.5e-13 48.2 0.1 9.2e-13 48.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284176363|ref|YP_003406639.1| - 0.021 14.8 0.0 0.029 14.3 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix DUF1495 PF07381.11 gi|284176363|ref|YP_003406639.1| - 0.073 12.9 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DnaJ PF00226.31 gi|284176365|ref|YP_003406641.1| - 1.4e-08 34.7 0.0 3.5e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 DnaJ domain DUF4762 PF15959.5 gi|284176368|ref|YP_003406644.1| - 0.18 11.8 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4762) HTH_IclR PF09339.10 gi|284176373|ref|YP_003406649.1| - 5.1e-06 26.2 0.0 7.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284176373|ref|YP_003406649.1| - 3e-05 23.8 0.0 3.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284176373|ref|YP_003406649.1| - 0.00018 21.3 0.1 0.00021 21.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|284176373|ref|YP_003406649.1| - 0.00042 20.3 0.1 0.00063 19.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284176373|ref|YP_003406649.1| - 0.0038 17.1 0.0 0.0048 16.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|284176373|ref|YP_003406649.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284176373|ref|YP_003406649.1| - 0.061 12.9 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|284176373|ref|YP_003406649.1| - 0.094 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 gi|284176373|ref|YP_003406649.1| - 0.097 12.6 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|284176373|ref|YP_003406649.1| - 0.1 12.9 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|284176373|ref|YP_003406649.1| - 0.16 12.5 0.0 0.19 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DNA_methylase PF00145.17 gi|284176374|ref|YP_003406650.1| - 9.1e-33 114.0 0.0 9.8e-21 74.4 0.0 2.9 2 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase DZR PF12773.7 gi|284176376|ref|YP_003406652.1| - 1.4e-06 28.2 45.1 0.059 13.4 0.7 6.6 4 2 2 6 6 6 5 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|284176376|ref|YP_003406652.1| - 0.014 15.3 2.4 0.014 15.3 2.4 7.2 7 2 1 8 8 8 0 SprT-like zinc ribbon domain Anti-TRAP PF15777.5 gi|284176376|ref|YP_003406652.1| - 0.024 14.6 3.4 0.024 14.6 3.4 6.5 5 3 2 8 8 8 0 Tryptophan RNA-binding attenuator protein inhibitory protein SspH PF08141.12 gi|284176376|ref|YP_003406652.1| - 0.098 12.8 0.1 0.18 12.0 0.1 1.4 1 0 0 1 1 1 0 Small acid-soluble spore protein H family HypA PF01155.19 gi|284176376|ref|YP_003406652.1| - 0.56 10.2 33.2 5.5 7.0 1.4 6.3 5 1 1 6 6 6 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_20 PF12840.7 gi|284176379|ref|YP_003406655.1| - 2e-07 30.9 0.1 2.5e-07 30.7 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284176379|ref|YP_003406655.1| - 6.9e-06 25.7 0.0 8.4e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|284176379|ref|YP_003406655.1| - 0.00016 21.5 0.0 0.00021 21.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_39 PF14090.6 gi|284176379|ref|YP_003406655.1| - 0.00021 20.9 0.1 0.00028 20.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284176379|ref|YP_003406655.1| - 0.00027 20.7 0.0 0.0003 20.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|284176379|ref|YP_003406655.1| - 0.00039 20.2 0.1 0.0006 19.6 0.1 1.2 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 gi|284176379|ref|YP_003406655.1| - 0.0007 19.3 0.1 0.00087 19.0 0.1 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284176379|ref|YP_003406655.1| - 0.0016 18.3 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|284176379|ref|YP_003406655.1| - 0.0027 18.1 0.0 0.0032 17.8 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|284176379|ref|YP_003406655.1| - 0.0051 16.7 0.0 0.0075 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284176379|ref|YP_003406655.1| - 0.008 15.7 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284176379|ref|YP_003406655.1| - 0.0087 15.9 0.3 0.035 13.9 0.2 1.9 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284176379|ref|YP_003406655.1| - 0.015 15.2 0.1 0.018 15.0 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|284176379|ref|YP_003406655.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|284176379|ref|YP_003406655.1| - 0.025 14.9 0.0 0.03 14.7 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein HTH_5 PF01022.20 gi|284176379|ref|YP_003406655.1| - 0.041 13.7 0.0 0.051 13.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|284176379|ref|YP_003406655.1| - 0.043 13.6 0.1 0.072 12.9 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Ribosomal_S25 PF03297.15 gi|284176379|ref|YP_003406655.1| - 0.046 13.9 0.0 0.048 13.9 0.0 1.1 1 0 0 1 1 1 0 S25 ribosomal protein Fe_dep_repress PF01325.19 gi|284176379|ref|YP_003406655.1| - 0.054 13.7 0.0 0.071 13.3 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_NinH PF06322.11 gi|284176379|ref|YP_003406655.1| - 0.079 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Phage NinH protein TBPIP PF07106.13 gi|284176379|ref|YP_003406655.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Cep57_MT_bd PF06657.13 gi|284176380|ref|YP_003406656.1| - 0.01 16.3 0.4 0.15 12.5 0.0 2.4 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 SlyX PF04102.12 gi|284176380|ref|YP_003406656.1| - 0.034 14.8 0.9 0.079 13.6 0.3 2.0 2 1 0 2 2 2 0 SlyX YtzH PF14165.6 gi|284176380|ref|YP_003406656.1| - 0.057 13.8 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 YtzH-like protein KLRAQ PF10205.9 gi|284176380|ref|YP_003406656.1| - 0.17 12.1 0.8 0.31 11.3 0.8 1.5 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein PspB PF06667.12 gi|284176380|ref|YP_003406656.1| - 0.27 11.3 1.8 17 5.6 0.1 2.4 2 0 0 2 2 2 0 Phage shock protein B HNH_5 PF14279.6 gi|284176381|ref|YP_003406657.1| - 2e-09 37.2 0.3 3.8e-09 36.3 0.3 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|284176381|ref|YP_003406657.1| - 2.8e-07 30.6 2.6 5.5e-07 29.7 2.6 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 gi|284176381|ref|YP_003406657.1| - 0.00019 21.3 0.1 0.0004 20.2 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease HTH_11 PF08279.12 gi|284176382|ref|YP_003406658.1| - 3.9e-06 26.7 0.0 9.8e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|284176382|ref|YP_003406658.1| - 0.00014 21.7 0.0 0.00032 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284176382|ref|YP_003406658.1| - 0.00066 19.5 0.1 0.19 11.6 0.0 3.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|284176382|ref|YP_003406658.1| - 0.0015 18.3 0.0 0.0049 16.6 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|284176382|ref|YP_003406658.1| - 0.002 18.1 0.0 0.0055 16.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_20 PF12840.7 gi|284176382|ref|YP_003406658.1| - 0.0024 17.9 0.1 0.018 15.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284176382|ref|YP_003406658.1| - 0.0048 16.4 0.0 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284176382|ref|YP_003406658.1| - 0.014 15.2 0.1 1.4 8.9 0.0 2.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284176382|ref|YP_003406658.1| - 0.016 15.1 0.1 0.05 13.5 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|284176382|ref|YP_003406658.1| - 0.022 14.7 0.0 0.086 12.8 0.0 2.0 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|284176382|ref|YP_003406658.1| - 0.027 14.2 0.0 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Zn_Tnp_IS1595 PF12760.7 gi|284176382|ref|YP_003406658.1| - 0.041 13.9 0.2 0.11 12.5 0.2 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TetR_N PF00440.23 gi|284176382|ref|YP_003406658.1| - 0.047 13.5 0.1 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Zn-ribbon_8 PF09723.10 gi|284176382|ref|YP_003406658.1| - 0.15 12.2 0.4 0.37 10.9 0.4 1.7 1 0 0 1 1 1 0 Zinc ribbon domain OAM_alpha PF16552.5 gi|284176383|ref|YP_003406659.1| - 0.14 12.0 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 D-ornithine 4,5-aminomutase alpha-subunit RNA_pol_Rpb6 PF01192.22 gi|284176384|ref|YP_003406660.1| - 0.017 15.0 0.1 0.075 13.0 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase Rpb6 Mrr_N PF14338.6 gi|284176384|ref|YP_003406660.1| - 0.034 14.3 0.0 0.045 13.9 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_45 PF14947.6 gi|284176384|ref|YP_003406660.1| - 0.066 13.2 0.0 0.08 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3658 PF12395.8 gi|284176384|ref|YP_003406660.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function PIN_3 PF13470.6 gi|284176387|ref|YP_003406663.1| - 0.0022 18.7 0.0 0.0036 18.0 0.0 1.4 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|284176387|ref|YP_003406663.1| - 0.049 14.1 0.1 0.11 13.0 0.1 1.5 1 1 0 1 1 1 0 PIN domain AAA_22 PF13401.6 gi|284176388|ref|YP_003406664.1| - 7.2e-11 42.5 0.0 1.9e-09 37.9 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284176388|ref|YP_003406664.1| - 1.7e-07 31.8 1.1 2e-06 28.3 0.3 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284176388|ref|YP_003406664.1| - 7e-06 26.5 0.1 0.00012 22.5 0.0 2.9 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284176388|ref|YP_003406664.1| - 0.0023 17.7 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|284176388|ref|YP_003406664.1| - 0.0033 17.4 0.1 1.4 8.7 0.0 2.9 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|284176388|ref|YP_003406664.1| - 0.0036 17.2 0.4 0.8 9.5 0.1 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_assoc_2 PF16193.5 gi|284176388|ref|YP_003406664.1| - 0.0057 17.0 0.1 0.015 15.7 0.1 1.7 1 0 0 1 1 1 1 AAA C-terminal domain RNA_helicase PF00910.22 gi|284176388|ref|YP_003406664.1| - 0.0088 16.4 0.0 0.057 13.8 0.0 2.4 2 1 0 2 2 2 1 RNA helicase AAA_18 PF13238.6 gi|284176388|ref|YP_003406664.1| - 0.0089 16.6 0.0 0.1 13.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain FUR PF01475.19 gi|284176388|ref|YP_003406664.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_32 PF13565.6 gi|284176388|ref|YP_003406664.1| - 0.012 16.3 0.1 0.065 13.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain AAA_5 PF07728.14 gi|284176388|ref|YP_003406664.1| - 0.017 15.1 0.0 0.075 13.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AP_endonuc_2 PF01261.24 gi|284176388|ref|YP_003406664.1| - 0.035 13.5 0.1 0.07 12.6 0.1 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel AAA_11 PF13086.6 gi|284176388|ref|YP_003406664.1| - 0.039 13.7 0.2 0.15 11.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain tRNA_lig_kinase PF08303.11 gi|284176388|ref|YP_003406664.1| - 0.044 13.9 0.0 0.074 13.1 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain bMG5 PF17972.1 gi|284176388|ref|YP_003406664.1| - 0.072 13.5 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG5 domain ABC_tran PF00005.27 gi|284176388|ref|YP_003406664.1| - 0.091 13.3 0.1 0.58 10.7 0.0 2.3 2 2 0 2 2 2 0 ABC transporter RuvB_N PF05496.12 gi|284176388|ref|YP_003406664.1| - 0.094 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|284176388|ref|YP_003406664.1| - 0.097 12.4 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|284176388|ref|YP_003406664.1| - 0.1 12.5 0.1 0.42 10.5 0.1 2.0 2 1 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|284176388|ref|YP_003406664.1| - 0.36 11.2 1.7 3.7 7.9 1.0 2.6 2 1 0 2 2 2 0 AAA domain CxC4 PF18717.1 gi|284176390|ref|YP_003406666.1| - 0.0044 16.9 0.3 0.0053 16.6 0.3 1.1 1 0 0 1 1 1 1 CxC4 like cysteine cluster associated with KDZ transposases CxC3 PF18804.1 gi|284176390|ref|YP_003406666.1| - 0.012 15.4 0.2 0.015 15.1 0.2 1.1 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases C1_1 PF00130.22 gi|284176390|ref|YP_003406666.1| - 0.029 14.2 0.5 0.041 13.8 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TrmB PF01978.19 gi|284176393|ref|YP_003406668.1| - 6.2e-05 22.8 0.0 0.00011 22.0 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284176393|ref|YP_003406668.1| - 0.0096 16.0 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284176393|ref|YP_003406668.1| - 0.021 14.8 0.0 0.067 13.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|284176393|ref|YP_003406668.1| - 0.05 14.0 0.0 0.077 13.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.7 gi|284176393|ref|YP_003406668.1| - 0.069 13.0 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 MarR family HSBP1 PF06825.12 gi|284176396|ref|YP_003406671.1| - 0.015 15.2 0.1 0.03 14.2 0.1 1.5 1 0 0 1 1 1 0 Heat shock factor binding protein 1 IFT46_B_C PF12317.8 gi|284176396|ref|YP_003406671.1| - 0.017 14.9 0.2 0.021 14.6 0.2 1.2 1 0 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal RHH_1 PF01402.21 gi|284176396|ref|YP_003406671.1| - 0.044 13.7 2.6 0.044 13.7 2.6 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family T3SS_HrpK1 PF16937.5 gi|284176396|ref|YP_003406671.1| - 0.061 13.0 0.1 0.75 9.4 0.0 2.0 2 0 0 2 2 2 0 Type III secretion system translocator protein, HrpF PhoU PF01895.19 gi|284176396|ref|YP_003406671.1| - 0.086 13.3 1.3 0.18 12.3 0.8 1.9 1 1 0 1 1 1 0 PhoU domain BLOC1_2 PF10046.9 gi|284176396|ref|YP_003406671.1| - 0.097 13.0 0.4 0.17 12.2 0.4 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BBP1_C PF15272.6 gi|284176396|ref|YP_003406671.1| - 0.11 12.3 2.7 0.15 11.9 2.7 1.2 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal DUF2802 PF10975.8 gi|284176396|ref|YP_003406671.1| - 0.23 11.6 1.4 4.9 7.4 0.1 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF2802) PSK_trans_fac PF07704.11 gi|284176396|ref|YP_003406671.1| - 1 10.2 9.6 8.4 7.2 1.0 2.5 1 1 1 2 2 2 0 Rv0623-like transcription factor Apolipoprotein PF01442.18 gi|284176398|ref|YP_003406673.1| - 1.5e-10 41.3 1.9 6e-08 32.8 0.4 2.6 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain Phasin PF05597.11 gi|284176398|ref|YP_003406673.1| - 1.5e-06 28.2 17.3 0.02 14.9 6.7 4.0 1 1 2 3 3 3 3 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF883 PF05957.13 gi|284176398|ref|YP_003406673.1| - 1.1e-05 25.9 15.2 0.0027 18.3 1.7 5.3 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF883) YtxH PF12732.7 gi|284176398|ref|YP_003406673.1| - 2.5e-05 24.7 35.0 1.7 9.2 10.4 5.9 2 1 2 4 4 4 3 YtxH-like protein ApoLp-III PF07464.11 gi|284176398|ref|YP_003406673.1| - 2.5e-05 24.4 12.2 0.0056 16.8 5.3 2.9 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) MT0933_antitox PF14013.6 gi|284176398|ref|YP_003406673.1| - 0.0025 18.1 59.7 0.23 11.8 5.8 6.0 2 2 4 6 6 6 3 MT0933-like antitoxin protein REF PF05755.12 gi|284176398|ref|YP_003406673.1| - 0.021 14.6 14.1 0.23 11.2 6.9 2.6 1 1 1 2 2 2 0 Rubber elongation factor protein (REF) DUF445 PF04286.12 gi|284176398|ref|YP_003406673.1| - 0.042 13.7 1.2 0.073 12.9 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) DUF1451 PF07295.11 gi|284176398|ref|YP_003406673.1| - 0.057 13.5 1.7 0.096 12.7 0.2 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain DUF2884 PF11101.8 gi|284176398|ref|YP_003406673.1| - 0.059 12.9 8.3 0.18 11.3 7.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) Baculo_PEP_C PF04513.12 gi|284176398|ref|YP_003406673.1| - 0.083 12.9 2.0 1.5 8.9 0.5 2.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Prominin PF05478.11 gi|284176398|ref|YP_003406673.1| - 0.16 9.9 1.8 0.23 9.4 1.8 1.2 1 0 0 1 1 1 0 Prominin ApoO PF09769.9 gi|284176398|ref|YP_003406673.1| - 0.22 11.5 0.1 15 5.5 0.4 3.0 1 1 1 2 2 2 0 Apolipoprotein O DUF948 PF06103.11 gi|284176398|ref|YP_003406673.1| - 0.35 11.2 26.9 1.8e+04 -9.5 26.9 4.1 1 1 0 1 1 0 0 Bacterial protein of unknown function (DUF948) Mitofilin PF09731.9 gi|284176398|ref|YP_003406673.1| - 0.42 9.4 9.2 0.94 8.2 9.2 1.6 1 0 0 1 1 1 0 Mitochondrial inner membrane protein ISG65-75 PF11727.8 gi|284176398|ref|YP_003406673.1| - 1.1 8.4 15.1 3 7.0 9.1 2.3 1 1 0 2 2 2 0 Invariant surface glycoprotein MttA_Hcf106 PF02416.16 gi|284176399|ref|YP_003406674.1| - 3.9e-08 32.5 1.4 3.9e-08 32.5 1.4 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family Sortilin-Vps10 PF15902.5 gi|284176400|ref|YP_003406675.1| - 0.00022 20.2 0.0 0.00031 19.6 0.0 1.2 1 0 0 1 1 1 1 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|284176400|ref|YP_003406675.1| - 0.046 13.7 0.5 0.046 13.7 0.5 3.9 3 0 0 3 3 3 0 BNR/Asp-box repeat BNR_2 PF13088.6 gi|284176400|ref|YP_003406675.1| - 0.052 12.9 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 BNR repeat-like domain UCR_Fe-S_N PF10399.9 gi|284176400|ref|YP_003406675.1| - 0.18 11.2 1.6 0.31 10.4 1.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal D5_N PF08706.11 gi|284176401|ref|YP_003406676.1| - 1.4e-14 54.6 1.0 1.6e-13 51.2 0.0 2.7 2 0 0 2 2 2 1 D5 N terminal like Pox_D5 PF03288.16 gi|284176401|ref|YP_003406676.1| - 4.1e-06 27.2 0.3 1.3e-05 25.6 0.2 1.9 2 0 0 2 2 2 1 Poxvirus D5 protein-like RFX_DNA_binding PF02257.15 gi|284176401|ref|YP_003406676.1| - 0.0012 19.5 0.1 0.0024 18.4 0.1 1.5 1 0 0 1 1 1 1 RFX DNA-binding domain Cdc6_C PF09079.11 gi|284176401|ref|YP_003406676.1| - 0.47 10.5 3.8 0.33 10.9 0.2 2.5 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain Fe_dep_repress PF01325.19 gi|284176403|ref|YP_003406678.1| - 0.00065 19.8 0.0 0.00092 19.4 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DsrD PF08679.11 gi|284176403|ref|YP_003406678.1| - 0.06 13.6 0.0 0.063 13.5 0.0 1.1 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) HrcA_DNA-bdg PF03444.15 gi|284176403|ref|YP_003406678.1| - 0.092 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF2460 PF09343.10 gi|284176404|ref|YP_003406679.1| - 0.031 13.8 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) DUF5040 PF16443.5 gi|284176404|ref|YP_003406679.1| - 0.11 11.8 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5040) UBA_6 PF18039.1 gi|284176406|ref|YP_003406681.1| - 0.097 12.6 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 UBA-like domain LapA_dom PF06305.11 gi|284176407|ref|YP_003406682.1| - 0.61 9.9 3.4 0.75 9.7 0.0 2.0 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DZR PF12773.7 gi|284176408|ref|YP_003406683.1| - 0.00089 19.2 0.4 0.0016 18.4 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284176408|ref|YP_003406683.1| - 0.006 16.7 1.0 0.014 15.5 1.0 1.6 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|284176408|ref|YP_003406683.1| - 0.0097 15.4 0.4 2.4 7.7 0.1 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding zf-HIT PF04438.16 gi|284176408|ref|YP_003406683.1| - 0.016 15.1 2.0 0.047 13.6 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger HypA PF01155.19 gi|284176408|ref|YP_003406683.1| - 0.038 14.0 0.8 0.063 13.3 0.1 1.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|284176408|ref|YP_003406683.1| - 0.26 10.8 2.6 14 5.3 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|284176408|ref|YP_003406683.1| - 0.26 11.2 0.3 0.26 11.2 0.3 2.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain RinB PF06116.12 gi|284176409|ref|YP_003406684.1| - 0.065 13.3 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Transcriptional activator RinB DpaA_N PF16924.5 gi|284176409|ref|YP_003406684.1| - 0.16 12.0 0.0 0.24 11.5 0.0 1.3 1 1 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Mating_N PF12731.7 gi|284176411|ref|YP_003406686.1| - 0.016 15.3 0.9 0.13 12.3 0.1 2.1 2 0 0 2 2 2 0 Mating-type protein beta 1 Phage_gp53 PF11246.8 gi|284176411|ref|YP_003406686.1| - 0.032 13.9 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Base plate wedge protein 53 SMBP PF16785.5 gi|284176411|ref|YP_003406686.1| - 0.043 14.0 1.7 1.4 9.1 0.2 2.2 2 0 0 2 2 2 0 Small metal-binding protein Phage_integrase PF00589.22 gi|284176412|ref|YP_003406687.1| - 1.2e-25 90.3 0.1 1.5e-25 90.0 0.1 1.0 1 0 0 1 1 1 1 Phage integrase family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/all.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/all.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 13:59:40 2019 # [ok]