#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DUF1628	PF07790.6	gi|284176295|ref|YP_003406571.1|	-	7.6e-16	58.6	5.2	7.6e-16	58.6	3.6	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1628)
Sulfatase	PF00884.18	gi|284176297|ref|YP_003406573.1|	-	0.0017	17.5	0.0	0.0023	17.1	0.0	1.1	1	0	0	1	1	1	1	Sulfatase
Methyltransf_21	PF05050.7	gi|284176299|ref|YP_003406575.1|	-	0.0013	18.7	0.0	0.0026	17.7	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|284176299|ref|YP_003406575.1|	-	0.038	14.5	0.0	0.059	13.9	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.8	gi|284176299|ref|YP_003406575.1|	-	0.11	11.5	0.2	0.16	11.0	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Bac_DNA_binding	PF00216.16	gi|284176299|ref|YP_003406575.1|	-	0.13	12.2	0.1	0.29	11.1	0.0	1.6	1	1	0	1	1	1	0	Bacterial	DNA-binding	protein
YlaC	PF10777.4	gi|284176300|ref|YP_003406576.1|	-	0.11	12.0	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Inner	membrane	protein	YlaC
DUF3333	PF11812.3	gi|284176300|ref|YP_003406576.1|	-	0.14	12.1	0.2	0.15	12.0	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3333)
CarboxypepD_reg	PF13620.1	gi|284176302|ref|YP_003406578.1|	-	0.00052	20.0	6.1	0.42	10.6	0.1	4.3	4	0	0	4	4	4	2	Carboxypeptidase	regulatory-like	domain
DUF4480	PF13715.1	gi|284176302|ref|YP_003406578.1|	-	0.0028	17.6	0.3	3.1	7.9	0.0	3.4	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4480)
Peptidase_S8	PF00082.17	gi|284176303|ref|YP_003406579.1|	-	2.5e-33	115.4	4.1	3.3e-33	115.0	2.9	1.2	1	0	0	1	1	1	1	Subtilase	family
TAT_signal	PF10518.4	gi|284176305|ref|YP_003406581.1|	-	0.3	11.1	5.3	0.59	10.2	3.7	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Laminin_G_2	PF02210.19	gi|284176306|ref|YP_003406582.1|	-	0.0046	16.9	0.0	0.0093	15.9	0.0	1.5	1	0	0	1	1	1	1	Laminin	G	domain
Sec23_trunk	PF04811.10	gi|284176308|ref|YP_003406584.1|	-	0.032	13.5	0.2	0.18	11.1	0.1	2.0	2	0	0	2	2	2	0	Sec23/Sec24	trunk	domain
DUF1469	PF07332.6	gi|284176310|ref|YP_003406586.1|	-	0.046	13.4	0.1	0.054	13.2	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
DUF2306	PF10067.4	gi|284176313|ref|YP_003406589.1|	-	0.0078	16.3	0.6	0.0078	16.3	0.4	1.5	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2306)
MgtC	PF02308.11	gi|284176316|ref|YP_003406592.1|	-	0.0041	16.9	2.6	0.0055	16.5	1.8	1.3	1	0	0	1	1	1	1	MgtC	family
DUF754	PF05449.6	gi|284176316|ref|YP_003406592.1|	-	0.16	12.0	1.9	0.21	11.6	1.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF754)
MFS_1	PF07690.11	gi|284176316|ref|YP_003406592.1|	-	0.18	10.5	7.8	0.41	9.3	5.4	1.6	1	1	0	1	1	1	0	Major	Facilitator	Superfamily
ABC2_membrane_2	PF12679.2	gi|284176316|ref|YP_003406592.1|	-	0.91	8.3	5.2	1	8.1	3.6	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
TMF_TATA_bd	PF12325.3	gi|284176319|ref|YP_003406595.1|	-	0.024	14.3	5.1	0.042	13.5	3.5	1.3	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
AA_permease	PF00324.16	gi|284176319|ref|YP_003406595.1|	-	0.029	12.7	0.1	1.8	6.7	0.0	1.9	2	0	0	2	2	2	0	Amino	acid	permease
Phage_GP20	PF06810.6	gi|284176319|ref|YP_003406595.1|	-	0.032	13.6	1.7	0.058	12.8	1.2	1.4	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
TMP_2	PF06791.8	gi|284176319|ref|YP_003406595.1|	-	0.12	11.9	0.1	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Prophage	tail	length	tape	measure	protein
DUF2101	PF09874.4	gi|284176319|ref|YP_003406595.1|	-	0.34	10.3	1.2	1.8	7.9	0.0	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2101)
DUF3153	PF11353.3	gi|284176319|ref|YP_003406595.1|	-	1.4	8.2	5.4	0.42	10.0	1.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3153)
Atg14	PF10186.4	gi|284176319|ref|YP_003406595.1|	-	5.1	5.9	6.6	7.8	5.3	4.6	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF61	PF01886.11	gi|284176320|ref|YP_003406596.1|	-	0.038	13.8	0.2	0.064	13.1	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF61
GYR	PF02756.9	gi|284176321|ref|YP_003406597.1|	-	0.11	12.2	0.0	0.11	12.2	0.0	2.4	2	0	0	2	2	2	0	GYR	motif
AAA_10	PF12846.2	gi|284176322|ref|YP_003406598.1|	-	0.00046	19.7	0.5	0.00046	19.7	0.4	1.8	2	0	0	2	2	2	1	AAA-like	domain
MCM_N	PF14551.1	gi|284176323|ref|YP_003406599.1|	-	7.5e-10	39.3	0.0	3.2e-09	37.3	0.0	2.0	1	1	0	1	1	1	1	MCM	N-terminal	domain
DUF2975	PF11188.3	gi|284176325|ref|YP_003406601.1|	-	1.6	8.4	13.7	7.2	6.3	0.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
HHH_2	PF12826.2	gi|284176326|ref|YP_003406602.1|	-	7.5e-07	28.9	0.1	1.2e-06	28.3	0.1	1.3	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|284176326|ref|YP_003406602.1|	-	1.2e-05	25.3	0.5	2.2e-05	24.5	0.3	1.5	1	1	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|284176326|ref|YP_003406602.1|	-	0.0046	16.5	0.1	0.019	14.6	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
SHOCT	PF09851.4	gi|284176326|ref|YP_003406602.1|	-	0.0062	15.9	0.9	0.0062	15.9	0.6	2.1	2	0	0	2	2	2	1	Short	C-terminal	domain
HHH_6	PF14579.1	gi|284176326|ref|YP_003406602.1|	-	0.063	13.3	0.3	0.31	11.1	0.1	2.0	1	1	1	2	2	2	0	Helix-hairpin-helix	motif
DUF1707	PF08044.6	gi|284176326|ref|YP_003406602.1|	-	0.068	12.9	1.6	0.58	9.9	0.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1707)
HHH_8	PF14716.1	gi|284176326|ref|YP_003406602.1|	-	0.11	12.6	0.1	0.34	11.1	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
HTH_24	PF13412.1	gi|284176327|ref|YP_003406603.1|	-	1.1e-07	31.0	0.0	1.9e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|284176327|ref|YP_003406603.1|	-	0.00036	20.1	0.0	0.00054	19.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|284176327|ref|YP_003406603.1|	-	0.0031	17.1	0.0	0.0049	16.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|284176327|ref|YP_003406603.1|	-	0.007	15.8	0.0	0.015	14.8	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|284176327|ref|YP_003406603.1|	-	0.0081	15.7	0.0	0.014	14.9	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.1	gi|284176327|ref|YP_003406603.1|	-	0.048	13.4	0.0	0.097	12.4	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GerE	PF00196.14	gi|284176327|ref|YP_003406603.1|	-	0.096	12.0	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Mrr_cat	PF04471.7	gi|284176328|ref|YP_003406604.1|	-	1.2e-33	115.3	0.2	1.8e-33	114.7	0.2	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.1	gi|284176328|ref|YP_003406604.1|	-	1.5e-06	28.1	1.2	3e-06	27.1	0.9	1.5	1	1	0	1	1	1	1	Restriction	endonuclease
KAP_NTPase	PF07693.9	gi|284176329|ref|YP_003406605.1|	-	3.2e-28	98.6	0.0	3.3e-27	95.3	0.0	2.6	2	1	0	2	2	2	1	KAP	family	P-loop	domain
AAA_16	PF13191.1	gi|284176329|ref|YP_003406605.1|	-	5.2e-05	23.3	1.5	0.019	14.9	0.0	3.7	3	1	0	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|284176329|ref|YP_003406605.1|	-	0.00015	21.8	0.3	0.13	12.3	0.0	4.3	4	1	0	4	4	4	1	AAA	domain
NB-ARC	PF00931.17	gi|284176329|ref|YP_003406605.1|	-	0.00053	18.9	0.1	0.016	14.0	0.0	2.7	2	0	0	2	2	2	1	NB-ARC	domain
DUF87	PF01935.12	gi|284176329|ref|YP_003406605.1|	-	0.011	15.5	9.4	0.7	9.6	0.0	4.3	3	1	2	5	5	5	0	Domain	of	unknown	function	DUF87
Arch_ATPase	PF01637.13	gi|284176329|ref|YP_003406605.1|	-	0.018	14.7	0.1	0.018	14.7	0.1	3.6	3	2	0	3	3	3	0	Archaeal	ATPase
AAA	PF00004.24	gi|284176329|ref|YP_003406605.1|	-	0.02	15.0	0.0	9.8	6.3	0.0	3.6	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MMR_HSR1	PF01926.18	gi|284176329|ref|YP_003406605.1|	-	0.056	13.3	0.1	4.8	7.1	0.0	3.8	5	0	0	5	5	5	0	50S	ribosome-binding	GTPase
ABC_tran	PF00005.22	gi|284176329|ref|YP_003406605.1|	-	0.065	13.5	0.0	0.065	13.5	0.0	3.7	5	1	0	5	5	5	0	ABC	transporter
VIT1	PF01988.14	gi|284176329|ref|YP_003406605.1|	-	0.14	11.6	0.0	0.31	10.4	0.0	1.6	1	0	0	1	1	1	0	VIT	family
Phage_integrase	PF00589.17	gi|284176330|ref|YP_003406606.1|	-	7e-12	45.3	0.2	4.9e-11	42.5	0.1	2.3	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|284176330|ref|YP_003406606.1|	-	0.018	15.1	0.0	0.074	13.2	0.0	2.1	2	1	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|284176330|ref|YP_003406606.1|	-	0.043	14.1	0.0	0.098	12.9	0.0	1.7	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DUF1707	PF08044.6	gi|284176331|ref|YP_003406607.1|	-	0.021	14.5	0.2	0.031	14.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1707)
SHOCT	PF09851.4	gi|284176331|ref|YP_003406607.1|	-	0.038	13.4	0.6	0.071	12.6	0.4	1.4	1	0	0	1	1	1	0	Short	C-terminal	domain
DUF2093	PF09866.4	gi|284176334|ref|YP_003406610.1|	-	0.001	18.1	0.0	0.0016	17.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2093)
Zn-ribbon_8	PF09723.5	gi|284176335|ref|YP_003406611.1|	-	0.0015	18.3	1.0	1.3	9.0	0.2	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|284176335|ref|YP_003406611.1|	-	0.0043	16.6	1.2	0.0068	16.0	0.8	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Lar_restr_allev	PF14354.1	gi|284176335|ref|YP_003406611.1|	-	0.0074	16.5	1.2	0.011	15.9	0.9	1.3	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|284176335|ref|YP_003406611.1|	-	0.0085	15.2	0.4	0.78	9.0	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|284176335|ref|YP_003406611.1|	-	0.0091	15.8	2.0	0.19	11.6	0.1	2.1	2	0	0	2	2	2	1	Rubredoxin
Zn_Tnp_IS1595	PF12760.2	gi|284176335|ref|YP_003406611.1|	-	0.01	15.6	1.2	0.014	15.1	0.9	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|284176335|ref|YP_003406611.1|	-	0.041	13.2	3.3	0.52	9.6	2.0	2.3	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|284176335|ref|YP_003406611.1|	-	0.056	12.9	1.3	3.7	7.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|284176335|ref|YP_003406611.1|	-	0.079	13.0	1.3	1.3	9.0	0.3	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DZR	PF12773.2	gi|284176335|ref|YP_003406611.1|	-	0.1	12.4	1.5	0.18	11.6	1.0	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|284176335|ref|YP_003406611.1|	-	0.11	11.9	0.4	8.3	6.0	0.0	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF4379	PF14311.1	gi|284176335|ref|YP_003406611.1|	-	0.13	12.1	1.8	0.26	11.1	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
Auto_anti-p27	PF06677.7	gi|284176335|ref|YP_003406611.1|	-	0.14	11.9	3.1	0.59	9.9	0.3	2.2	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
ADK_lid	PF05191.9	gi|284176335|ref|YP_003406611.1|	-	0.15	11.7	6.8	0.68	9.6	0.0	2.5	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
DUF35_N	PF12172.3	gi|284176335|ref|YP_003406611.1|	-	0.16	11.9	4.7	2.9	7.9	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Nudix_N_2	PF14803.1	gi|284176335|ref|YP_003406611.1|	-	0.25	11.0	2.2	9.6	5.9	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
HypA	PF01155.14	gi|284176335|ref|YP_003406611.1|	-	0.33	10.6	1.3	11	5.7	0.0	2.0	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-H2C2_2	PF13465.1	gi|284176335|ref|YP_003406611.1|	-	0.4	11.0	2.1	1.2	9.5	0.0	2.0	2	0	0	2	2	2	0	Zinc-finger	double	domain
Prok-RING_1	PF14446.1	gi|284176335|ref|YP_003406611.1|	-	0.43	10.3	3.5	1.7	8.4	2.4	1.8	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
UPF0547	PF10571.4	gi|284176335|ref|YP_003406611.1|	-	0.5	10.1	4.2	4.2	7.1	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-Mss51	PF13824.1	gi|284176335|ref|YP_003406611.1|	-	0.55	10.1	4.6	4.7	7.1	3.3	2.0	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-IS66	PF13005.2	gi|284176335|ref|YP_003406611.1|	-	1.3	9.0	4.8	11	6.0	0.1	2.2	1	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Prim_Zn_Ribbon	PF08273.7	gi|284176335|ref|YP_003406611.1|	-	4.8	7.3	8.8	29	4.8	5.8	2.2	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zf-HYPF	PF07503.7	gi|284176335|ref|YP_003406611.1|	-	9.9	5.6	8.5	4.3	6.8	0.4	2.3	1	1	1	2	2	2	0	HypF	finger
DUF3154	PF11351.3	gi|284176337|ref|YP_003406613.1|	-	0.4	10.4	3.8	0.71	9.6	0.2	2.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3154)
SPOR	PF05036.8	gi|284176340|ref|YP_003406616.1|	-	0.0011	19.1	0.0	0.96	9.6	0.0	2.2	2	0	0	2	2	2	2	Sporulation	related	domain
zf-BED	PF02892.10	gi|284176340|ref|YP_003406616.1|	-	0.03	14.0	0.3	0.14	11.9	0.0	2.1	2	0	0	2	2	2	0	BED	zinc	finger
COP23	PF14218.1	gi|284176341|ref|YP_003406617.1|	-	0.018	14.6	0.0	0.021	14.4	0.0	1.1	1	0	0	1	1	1	0	Circadian	oscillating	protein	COP23
DUF4352	PF11611.3	gi|284176344|ref|YP_003406620.1|	-	0.15	12.2	0.0	0.24	11.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4352)
Kelch_4	PF13418.1	gi|284176345|ref|YP_003406621.1|	-	0.13	12.0	0.0	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Galactose	oxidase,	central	domain
Methyltransf_26	PF13659.1	gi|284176350|ref|YP_003406626.1|	-	0.00064	19.7	0.0	0.001	19.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
N6-adenineMlase	PF10237.4	gi|284176350|ref|YP_003406626.1|	-	0.15	11.6	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	Probable	N6-adenine	methyltransferase
DUF1628	PF07790.6	gi|284176351|ref|YP_003406627.1|	-	5.6e-15	55.8	1.6	1.2e-14	54.7	1.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
DUF3158	PF11358.3	gi|284176352|ref|YP_003406628.1|	-	0.1	12.0	0.1	0.15	11.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3158)
MDMPI_N	PF11716.3	gi|284176352|ref|YP_003406628.1|	-	0.95	9.8	6.6	0.19	12.1	2.4	1.5	2	0	0	2	2	2	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
DUF3347	PF11827.3	gi|284176352|ref|YP_003406628.1|	-	3.6	7.5	6.1	5.1	7.0	4.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3347)
CbiA	PF01656.18	gi|284176353|ref|YP_003406629.1|	-	2.6e-14	53.0	0.0	3.5e-14	52.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|284176353|ref|YP_003406629.1|	-	5.6e-05	23.1	0.0	0.11	12.4	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
MipZ	PF09140.6	gi|284176353|ref|YP_003406629.1|	-	6.2e-05	22.1	0.4	0.084	11.9	0.1	2.2	1	1	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|284176353|ref|YP_003406629.1|	-	0.018	14.0	0.0	0.093	11.7	0.0	2.1	2	0	0	2	2	2	0	Anion-transporting	ATPase
DZR	PF12773.2	gi|284176354|ref|YP_003406630.1|	-	0.063	13.1	0.2	0.13	12.1	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|284176355|ref|YP_003406631.1|	-	0.026	13.8	0.5	0.47	9.8	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Rubredoxin	PF00301.15	gi|284176355|ref|YP_003406631.1|	-	0.052	13.4	1.1	4.9	7.1	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin
OrfB_Zn_ribbon	PF07282.6	gi|284176355|ref|YP_003406631.1|	-	0.078	12.6	0.3	0.11	12.1	0.2	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|284176355|ref|YP_003406631.1|	-	0.08	12.7	0.9	0.11	12.3	0.6	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF4379	PF14311.1	gi|284176355|ref|YP_003406631.1|	-	0.11	12.3	1.3	0.25	11.1	0.8	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4379)
Prim_Zn_Ribbon	PF08273.7	gi|284176355|ref|YP_003406631.1|	-	0.41	10.7	2.9	0.71	9.9	2.0	1.4	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Prok-RING_1	PF14446.1	gi|284176358|ref|YP_003406634.1|	-	0.085	12.5	0.1	0.1	12.3	0.1	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-ribbon_3	PF13248.1	gi|284176359|ref|YP_003406635.1|	-	0.0017	17.5	6.1	0.0078	15.3	4.2	1.9	1	1	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|284176359|ref|YP_003406635.1|	-	0.0028	17.4	2.2	0.0039	16.9	1.5	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
RNHCP	PF12647.2	gi|284176359|ref|YP_003406635.1|	-	0.0035	17.1	0.6	0.0035	17.1	0.4	1.0	1	0	0	1	1	1	1	RNHCP	domain
zinc_ribbon_2	PF13240.1	gi|284176359|ref|YP_003406635.1|	-	0.0046	16.3	6.8	0.026	14.0	0.3	2.0	1	1	1	2	2	2	2	zinc-ribbon	domain
C1_1	PF00130.17	gi|284176359|ref|YP_003406635.1|	-	0.01	15.5	0.4	0.011	15.4	0.3	1.1	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF164	PF02591.10	gi|284176359|ref|YP_003406635.1|	-	0.011	15.4	2.4	0.8	9.5	0.1	2.1	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
zf-HYPF	PF07503.7	gi|284176359|ref|YP_003406635.1|	-	0.012	15.0	1.6	0.032	13.6	0.1	1.9	2	0	0	2	2	2	0	HypF	finger
zf-ISL3	PF14690.1	gi|284176359|ref|YP_003406635.1|	-	0.012	15.6	2.0	0.26	11.3	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
UPF0547	PF10571.4	gi|284176359|ref|YP_003406635.1|	-	0.013	15.1	3.1	0.13	12.0	0.1	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Cys_rich_CPXG	PF14255.1	gi|284176359|ref|YP_003406635.1|	-	0.014	15.1	6.1	0.035	13.9	0.1	2.1	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
zf-CHCC	PF10276.4	gi|284176359|ref|YP_003406635.1|	-	0.015	15.1	0.5	2.2	8.2	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	domain
Zn-ribbon_8	PF09723.5	gi|284176359|ref|YP_003406635.1|	-	0.015	15.2	1.8	0.072	13.0	0.1	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
Glutaredoxin	PF00462.19	gi|284176359|ref|YP_003406635.1|	-	0.024	14.5	3.9	0.62	10.0	0.2	2.0	1	1	1	2	2	2	0	Glutaredoxin
zf-Di19	PF05605.7	gi|284176359|ref|YP_003406635.1|	-	0.026	14.6	5.6	0.21	11.7	0.1	2.1	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C3HC4_3	PF13920.1	gi|284176359|ref|YP_003406635.1|	-	0.029	14.0	2.0	0.16	11.6	1.4	1.8	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-IS66	PF13005.2	gi|284176359|ref|YP_003406635.1|	-	0.03	14.3	1.8	0.2	11.6	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_Tnp_IS1595	PF12760.2	gi|284176359|ref|YP_003406635.1|	-	0.032	14.0	5.1	0.18	11.6	0.2	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Molybdop_Fe4S4	PF04879.11	gi|284176359|ref|YP_003406635.1|	-	0.043	13.6	3.3	1.3	8.9	0.2	2.1	2	0	0	2	2	2	0	Molybdopterin	oxidoreductase	Fe4S4	domain
HypA	PF01155.14	gi|284176359|ref|YP_003406635.1|	-	0.046	13.4	0.6	0.046	13.4	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
FANCL_C	PF11793.3	gi|284176359|ref|YP_003406635.1|	-	0.055	13.4	0.9	4.7	7.2	0.0	2.0	2	0	0	2	2	2	0	FANCL	C-terminal	domain
TerY-C	PF15616.1	gi|284176359|ref|YP_003406635.1|	-	0.08	12.8	4.3	1.4	8.8	3.4	1.9	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
DUF35_N	PF12172.3	gi|284176359|ref|YP_003406635.1|	-	0.083	12.8	1.6	1.5	8.7	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-NADH-PPase	PF09297.6	gi|284176359|ref|YP_003406635.1|	-	0.086	12.3	1.5	0.32	10.5	1.0	1.8	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Cas_CXXC_CXXC	PF09706.5	gi|284176359|ref|YP_003406635.1|	-	0.093	12.9	1.9	1	9.6	0.0	2.0	1	1	1	2	2	2	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
zf-C4_Topoisom	PF01396.14	gi|284176359|ref|YP_003406635.1|	-	0.099	12.1	0.7	1.6	8.2	0.0	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Prok-RING_1	PF14446.1	gi|284176359|ref|YP_003406635.1|	-	0.099	12.3	1.0	2.5	7.9	0.1	2.0	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-H2C2_2	PF13465.1	gi|284176359|ref|YP_003406635.1|	-	0.11	12.8	1.1	4.1	7.8	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
COPI_C	PF06957.6	gi|284176359|ref|YP_003406635.1|	-	0.11	10.9	0.6	0.12	10.8	0.4	1.0	1	0	0	1	1	1	0	Coatomer	(COPI)	alpha	subunit	C-terminus
zf-FCS	PF06467.9	gi|284176359|ref|YP_003406635.1|	-	0.11	12.0	0.8	2.3	7.9	0.1	2.0	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
IBR	PF01485.16	gi|284176359|ref|YP_003406635.1|	-	0.12	12.3	0.4	0.13	12.1	0.3	1.2	1	0	0	1	1	1	0	IBR	domain
zinc_ribbon_5	PF13719.1	gi|284176359|ref|YP_003406635.1|	-	0.12	11.9	2.2	0.62	9.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|284176359|ref|YP_003406635.1|	-	0.14	11.8	2.2	0.85	9.3	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|284176359|ref|YP_003406635.1|	-	0.17	11.6	1.9	0.63	9.7	1.3	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|284176359|ref|YP_003406635.1|	-	0.17	12.1	3.8	2.6	8.4	2.8	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|284176359|ref|YP_003406635.1|	-	0.18	11.1	2.3	2	7.8	0.1	2.0	2	0	0	2	2	2	0	TFIIB	zinc-binding
Auto_anti-p27	PF06677.7	gi|284176359|ref|YP_003406635.1|	-	0.2	11.4	1.0	2.2	8.1	0.1	2.1	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Ogr_Delta	PF04606.7	gi|284176359|ref|YP_003406635.1|	-	0.2	11.3	2.8	0.82	9.3	0.1	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-C2H2_4	PF13894.1	gi|284176359|ref|YP_003406635.1|	-	0.23	11.8	1.9	7.2	7.2	0.0	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Rubredoxin	PF00301.15	gi|284176359|ref|YP_003406635.1|	-	0.27	11.1	2.6	5.2	7.0	0.1	2.1	2	0	0	2	2	2	0	Rubredoxin
CpXC	PF14353.1	gi|284176359|ref|YP_003406635.1|	-	0.29	11.1	0.1	0.29	11.1	0.1	1.9	1	1	1	2	2	2	0	CpXC	protein
zf-TFIIB	PF13453.1	gi|284176359|ref|YP_003406635.1|	-	0.32	10.2	2.1	0.83	8.8	1.5	1.6	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-RING_3	PF14369.1	gi|284176359|ref|YP_003406635.1|	-	0.36	10.8	6.7	0.5	10.4	0.5	2.1	1	1	1	2	2	2	0	zinc-finger
DUF329	PF03884.9	gi|284176359|ref|YP_003406635.1|	-	0.82	9.2	3.8	9.9	5.8	3.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-LITAF-like	PF10601.4	gi|284176359|ref|YP_003406635.1|	-	1.2	9.0	3.9	1.5	8.7	0.2	2.0	1	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|284176359|ref|YP_003406635.1|	-	1.3	8.8	5.0	1.5	8.5	0.4	2.1	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Thioredoxin_3	PF13192.1	gi|284176359|ref|YP_003406635.1|	-	1.7	8.5	4.1	3.6	7.4	0.2	2.0	1	1	1	2	2	2	0	Thioredoxin	domain
zf-RING_4	PF14570.1	gi|284176359|ref|YP_003406635.1|	-	3.4	7.3	5.6	11	5.6	0.3	2.0	1	1	1	2	2	2	0	RING/Ubox	like	zinc-binding	domain
Zn_Tnp_IS1	PF03811.8	gi|284176359|ref|YP_003406635.1|	-	3.9	7.0	5.2	1.9e+02	1.6	3.8	2.1	1	1	0	1	1	1	0	InsA	N-terminal	domain
zf-C2HC_2	PF13913.1	gi|284176359|ref|YP_003406635.1|	-	4.3	7.1	7.7	1.7	8.3	0.6	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-RING_2	PF13639.1	gi|284176359|ref|YP_003406635.1|	-	9.4	6.1	6.7	43	4.0	0.9	2.0	1	1	1	2	2	2	0	Ring	finger	domain
DUF3470	PF11953.3	gi|284176360|ref|YP_003406636.1|	-	0.24	11.0	2.0	1.4	8.5	0.0	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3470)
DUF2296	PF10058.4	gi|284176361|ref|YP_003406637.1|	-	0.00029	20.4	0.1	0.012	15.3	0.1	2.2	2	0	0	2	2	2	1	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Zn_Tnp_IS1595	PF12760.2	gi|284176361|ref|YP_003406637.1|	-	0.028	14.2	0.6	0.049	13.4	0.4	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-trcl	PF13451.1	gi|284176361|ref|YP_003406637.1|	-	0.17	11.5	1.8	0.22	11.1	0.2	1.9	2	0	0	2	2	2	0	Probable	zinc-binding	domain
zf-Sec23_Sec24	PF04810.10	gi|284176361|ref|YP_003406637.1|	-	1.4	8.5	4.4	8.5	6.0	0.1	2.3	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Acetyltransf_10	PF13673.1	gi|284176362|ref|YP_003406638.1|	-	0.076	13.1	0.1	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PadR	PF03551.9	gi|284176363|ref|YP_003406639.1|	-	1.5e-12	47.0	0.1	1.9e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|284176363|ref|YP_003406639.1|	-	0.0069	16.1	0.0	0.009	15.8	0.0	1.3	1	1	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.6	gi|284176363|ref|YP_003406639.1|	-	0.044	13.4	0.0	0.059	13.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_27	PF13463.1	gi|284176363|ref|YP_003406639.1|	-	0.069	13.4	0.0	0.1	12.9	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.6	gi|284176363|ref|YP_003406639.1|	-	0.11	12.2	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	CDC6,	C	terminal
DnaJ	PF00226.26	gi|284176365|ref|YP_003406641.1|	-	1.9e-09	37.0	0.1	4.5e-09	35.9	0.0	1.6	2	0	0	2	2	2	1	DnaJ	domain
HalX	PF08663.5	gi|284176365|ref|YP_003406641.1|	-	0.98	9.4	4.5	7.1	6.6	0.0	2.6	3	0	0	3	3	3	0	HalX	domain
HTH_IclR	PF09339.5	gi|284176373|ref|YP_003406649.1|	-	7.6e-06	25.4	0.0	1.1e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|284176373|ref|YP_003406649.1|	-	1.4e-05	24.8	0.1	2e-05	24.3	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|284176373|ref|YP_003406649.1|	-	7.1e-05	22.3	0.0	9.7e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|284176373|ref|YP_003406649.1|	-	8.7e-05	22.1	0.0	0.0001	21.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|284176373|ref|YP_003406649.1|	-	0.0038	16.8	0.0	0.0047	16.5	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_5	PF01022.15	gi|284176373|ref|YP_003406649.1|	-	0.0059	16.2	0.0	0.0075	15.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.15	gi|284176373|ref|YP_003406649.1|	-	0.07	13.2	0.0	0.096	12.8	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_29	PF13551.1	gi|284176373|ref|YP_003406649.1|	-	0.1	12.7	0.0	0.11	12.5	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn	helix
PadR	PF03551.9	gi|284176373|ref|YP_003406649.1|	-	0.1	12.3	0.0	0.28	10.9	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.1	gi|284176373|ref|YP_003406649.1|	-	0.14	11.5	0.0	0.18	11.2	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|284176373|ref|YP_003406649.1|	-	0.15	12.4	0.0	0.19	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DNA_methylase	PF00145.12	gi|284176374|ref|YP_003406650.1|	-	7.5e-33	114.0	0.0	8.1e-21	74.4	0.0	2.9	2	1	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
DZR	PF12773.2	gi|284176376|ref|YP_003406652.1|	-	4.9e-06	26.2	46.1	0.078	12.8	0.5	6.9	4	2	1	5	5	5	4	Double	zinc	ribbon
DUF164	PF02591.10	gi|284176376|ref|YP_003406652.1|	-	0.024	14.4	0.5	0.024	14.4	0.3	4.9	6	0	0	6	6	6	0	Putative	zinc	ribbon	domain
HypA	PF01155.14	gi|284176376|ref|YP_003406652.1|	-	2.2	7.9	33.7	3.3	7.4	1.2	6.0	5	1	0	5	5	5	0	Hydrogenase	expression/synthesis	hypA	family
HTH_20	PF12840.2	gi|284176379|ref|YP_003406655.1|	-	1.7e-07	30.8	0.2	2.1e-07	30.6	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|284176379|ref|YP_003406655.1|	-	5.7e-06	25.7	0.0	6.9e-06	25.5	0.0	1.1	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|284176379|ref|YP_003406655.1|	-	4.5e-05	23.0	0.0	4.6e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|284176379|ref|YP_003406655.1|	-	4.6e-05	23.0	0.0	5.6e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|284176379|ref|YP_003406655.1|	-	0.00011	21.7	0.0	0.00015	21.3	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_30	PF13556.1	gi|284176379|ref|YP_003406655.1|	-	0.00017	21.0	0.1	0.00026	20.5	0.1	1.2	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|284176379|ref|YP_003406655.1|	-	0.00039	19.9	0.1	0.00049	19.6	0.1	1.1	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|284176379|ref|YP_003406655.1|	-	0.002	17.4	0.1	0.0026	17.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.11	gi|284176379|ref|YP_003406655.1|	-	0.0022	18.0	0.0	0.0027	17.7	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_39	PF14090.1	gi|284176379|ref|YP_003406655.1|	-	0.0034	16.8	0.1	0.0045	16.4	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|284176379|ref|YP_003406655.1|	-	0.0046	16.6	0.0	0.0067	16.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Phage_NinH	PF06322.6	gi|284176379|ref|YP_003406655.1|	-	0.0052	16.3	0.1	0.007	15.9	0.1	1.2	1	0	0	1	1	1	1	Phage	NinH	protein
DDRGK	PF09756.4	gi|284176379|ref|YP_003406655.1|	-	0.0064	15.9	0.0	0.0074	15.7	0.0	1.1	1	0	0	1	1	1	1	DDRGK	domain
HTH_AsnC-type	PF13404.1	gi|284176379|ref|YP_003406655.1|	-	0.0098	15.4	0.3	0.036	13.5	0.1	1.8	1	1	1	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_36	PF13730.1	gi|284176379|ref|YP_003406655.1|	-	0.013	15.5	0.0	0.015	15.4	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|284176379|ref|YP_003406655.1|	-	0.016	14.8	0.1	0.023	14.3	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
FaeA	PF04703.7	gi|284176379|ref|YP_003406655.1|	-	0.021	14.9	0.0	0.025	14.7	0.0	1.1	1	0	0	1	1	1	0	FaeA-like	protein
HTH_27	PF13463.1	gi|284176379|ref|YP_003406655.1|	-	0.022	15.0	0.0	0.032	14.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|284176379|ref|YP_003406655.1|	-	0.031	13.9	0.0	0.037	13.6	0.0	1.1	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.1	gi|284176379|ref|YP_003406655.1|	-	0.068	12.9	0.0	0.09	12.5	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|284176379|ref|YP_003406655.1|	-	0.081	12.8	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Ribosomal_S25	PF03297.10	gi|284176379|ref|YP_003406655.1|	-	0.13	12.2	0.0	0.14	12.1	0.0	1.1	1	0	0	1	1	1	0	S25	ribosomal	protein
KLRAQ	PF10205.4	gi|284176380|ref|YP_003406656.1|	-	0.038	14.0	0.9	0.064	13.2	0.6	1.5	1	1	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein
ADIP	PF11559.3	gi|284176380|ref|YP_003406656.1|	-	0.04	13.8	0.7	0.24	11.2	0.1	2.0	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF972	PF06156.8	gi|284176380|ref|YP_003406656.1|	-	0.042	14.1	0.2	0.073	13.4	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
YtzH	PF14165.1	gi|284176380|ref|YP_003406656.1|	-	0.073	13.3	0.5	0.15	12.3	0.3	1.6	1	1	0	1	1	1	0	YtzH-like	protein
Cep57_MT_bd	PF06657.8	gi|284176380|ref|YP_003406656.1|	-	0.085	12.8	0.3	0.33	10.9	0.1	2.0	2	0	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
PspB	PF06667.7	gi|284176380|ref|YP_003406656.1|	-	0.35	10.8	2.0	12	5.9	0.2	2.4	2	0	0	2	2	2	0	Phage	shock	protein	B
HNH	PF01844.18	gi|284176381|ref|YP_003406657.1|	-	7.6e-08	32.1	2.7	1.4e-07	31.2	1.8	1.4	1	0	0	1	1	1	1	HNH	endonuclease
HNH_4	PF13395.1	gi|284176381|ref|YP_003406657.1|	-	0.00013	21.4	0.1	0.00027	20.5	0.1	1.5	1	0	0	1	1	1	1	HNH	endonuclease
HNH_5	PF14279.1	gi|284176381|ref|YP_003406657.1|	-	0.0012	18.7	0.8	0.0021	18.0	0.5	1.5	1	0	0	1	1	1	1	HNH	endonuclease
Lar_restr_allev	PF14354.1	gi|284176381|ref|YP_003406657.1|	-	0.022	15.0	0.6	0.04	14.2	0.3	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
HTH_11	PF08279.7	gi|284176382|ref|YP_003406658.1|	-	2.5e-06	27.0	0.0	6.1e-06	25.7	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_36	PF13730.1	gi|284176382|ref|YP_003406658.1|	-	0.00017	21.6	0.0	0.0004	20.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|284176382|ref|YP_003406658.1|	-	0.00034	20.1	0.1	0.0019	17.7	0.0	2.3	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_20	PF12840.2	gi|284176382|ref|YP_003406658.1|	-	0.00057	19.6	0.0	0.0033	17.2	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|284176382|ref|YP_003406658.1|	-	0.00099	18.4	0.0	0.0033	16.7	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|284176382|ref|YP_003406658.1|	-	0.0016	18.0	0.0	0.0052	16.3	0.0	2.0	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_29	PF13551.1	gi|284176382|ref|YP_003406658.1|	-	0.0018	18.4	0.1	0.14	12.3	0.0	3.2	3	0	0	3	3	3	1	Winged	helix-turn	helix
TrmB	PF01978.14	gi|284176382|ref|YP_003406658.1|	-	0.026	14.1	0.1	0.079	12.6	0.1	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TetR_N	PF00440.18	gi|284176382|ref|YP_003406658.1|	-	0.076	12.6	0.0	0.24	11.0	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Zn_Tnp_IS1595	PF12760.2	gi|284176382|ref|YP_003406658.1|	-	0.1	12.3	0.2	0.27	11.0	0.1	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
RNase_P_Rpp14	PF01900.14	gi|284176382|ref|YP_003406658.1|	-	0.14	12.0	0.0	0.35	10.8	0.0	1.7	1	0	0	1	1	1	0	Rpp14/Pop5	family
HTH_45	PF14947.1	gi|284176384|ref|YP_003406660.1|	-	0.016	14.9	0.0	0.019	14.7	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
Mrr_N	PF14338.1	gi|284176384|ref|YP_003406660.1|	-	0.026	14.5	0.0	0.058	13.4	0.0	1.6	1	1	1	2	2	2	0	Mrr	N-terminal	domain
DUF3658	PF12395.3	gi|284176384|ref|YP_003406660.1|	-	0.14	11.7	0.0	0.2	11.2	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function
PIN_3	PF13470.1	gi|284176387|ref|YP_003406663.1|	-	4.5e-05	24.0	0.0	6.2e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
PIN	PF01850.16	gi|284176387|ref|YP_003406663.1|	-	0.082	13.2	0.1	0.16	12.2	0.1	1.5	1	1	0	1	1	1	0	PIN	domain
AAA_22	PF13401.1	gi|284176388|ref|YP_003406664.1|	-	1.3e-11	44.7	0.1	3.7e-10	40.0	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|284176388|ref|YP_003406664.1|	-	1.5e-07	31.5	1.4	1.1e-06	28.7	0.1	2.6	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|284176388|ref|YP_003406664.1|	-	8.3e-06	26.0	0.2	0.00014	22.0	0.0	2.9	2	2	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|284176388|ref|YP_003406664.1|	-	0.00026	21.7	1.6	0.0011	19.7	0.9	2.4	1	1	0	1	1	1	1	AAA	domain
Bac_DnaA	PF00308.13	gi|284176388|ref|YP_003406664.1|	-	0.00075	19.1	0.6	0.21	11.2	0.1	2.4	2	1	0	2	2	2	1	Bacterial	dnaA	protein
AAA_18	PF13238.1	gi|284176388|ref|YP_003406664.1|	-	0.0027	17.9	0.1	0.015	15.6	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.17	gi|284176388|ref|YP_003406664.1|	-	0.0073	16.4	0.0	0.047	13.8	0.0	2.4	2	1	0	2	2	2	1	RNA	helicase
FUR	PF01475.14	gi|284176388|ref|YP_003406664.1|	-	0.0093	15.8	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
AAA_5	PF07728.9	gi|284176388|ref|YP_003406664.1|	-	0.015	15.0	0.0	0.069	12.8	0.0	2.1	2	1	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.2	gi|284176388|ref|YP_003406664.1|	-	0.024	14.0	0.2	0.83	9.0	0.0	2.7	2	1	0	3	3	3	0	AAA-like	domain
AAA_11	PF13086.1	gi|284176388|ref|YP_003406664.1|	-	0.026	14.0	0.0	0.071	12.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
KTI12	PF08433.5	gi|284176388|ref|YP_003406664.1|	-	0.027	13.6	0.0	0.16	11.1	0.0	2.2	1	1	0	1	1	1	0	Chromatin	associated	protein	KTI12
tRNA_lig_kinase	PF08303.6	gi|284176388|ref|YP_003406664.1|	-	0.036	13.9	0.0	0.061	13.1	0.0	1.3	1	0	0	1	1	1	0	tRNA	ligase	kinase	domain
Zot	PF05707.7	gi|284176388|ref|YP_003406664.1|	-	0.045	13.2	0.0	0.083	12.3	0.0	1.4	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
NACHT	PF05729.7	gi|284176388|ref|YP_003406664.1|	-	0.052	13.2	0.1	0.22	11.1	0.1	2.0	1	1	0	1	1	1	0	NACHT	domain
RuvB_N	PF05496.7	gi|284176388|ref|YP_003406664.1|	-	0.07	12.1	0.0	0.15	11.0	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Arch_ATPase	PF01637.13	gi|284176388|ref|YP_003406664.1|	-	0.073	12.7	0.8	4.4	6.9	0.1	3.2	2	1	0	2	2	1	0	Archaeal	ATPase
DEAD	PF00270.24	gi|284176388|ref|YP_003406664.1|	-	0.075	12.5	0.2	8.6	5.8	0.0	2.5	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
ABC_tran	PF00005.22	gi|284176388|ref|YP_003406664.1|	-	0.075	13.3	0.1	0.48	10.7	0.0	2.3	2	2	0	2	2	2	0	ABC	transporter
IstB_IS21	PF01695.12	gi|284176388|ref|YP_003406664.1|	-	0.08	12.3	0.1	0.21	10.9	0.0	1.8	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|284176388|ref|YP_003406664.1|	-	0.15	11.4	0.6	2.3	7.5	0.0	2.7	2	1	1	3	3	3	0	AAA	domain
AAA_19	PF13245.1	gi|284176388|ref|YP_003406664.1|	-	0.66	9.7	3.3	0.58	9.9	0.4	2.3	2	1	0	2	2	2	0	Part	of	AAA	domain
C1_1	PF00130.17	gi|284176390|ref|YP_003406666.1|	-	0.013	15.2	0.5	0.018	14.7	0.3	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-BED	PF02892.10	gi|284176390|ref|YP_003406666.1|	-	0.059	13.1	0.3	0.6	9.9	0.0	2.0	2	0	0	2	2	2	0	BED	zinc	finger
zinc_ribbon_2	PF13240.1	gi|284176390|ref|YP_003406666.1|	-	0.078	12.4	0.5	0.33	10.5	0.3	2.2	2	1	0	2	2	2	0	zinc-ribbon	domain
Rpr2	PF04032.11	gi|284176390|ref|YP_003406666.1|	-	0.11	12.4	0.5	0.14	12.0	0.3	1.2	1	0	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
HypA	PF01155.14	gi|284176390|ref|YP_003406666.1|	-	0.16	11.6	0.4	0.19	11.3	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_4	PF13717.1	gi|284176390|ref|YP_003406666.1|	-	1	9.1	0.1	1	9.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|284176390|ref|YP_003406666.1|	-	5.7	6.6	7.4	1.2	8.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain