# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Pilin_N PF07790.11 gi|284176295|ref|YP_003406571.1| - 4.3e-16 59.6 5.2 4.3e-16 59.6 5.2 2.3 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal Sulfatase PF00884.23 gi|284176297|ref|YP_003406573.1| - 0.0022 17.4 0.0 0.003 17.0 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Methyltransf_21 PF05050.12 gi|284176299|ref|YP_003406575.1| - 0.015 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase FkbM domain Bac_DNA_binding PF00216.21 gi|284176299|ref|YP_003406575.1| - 0.057 13.6 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial DNA-binding protein PrmA PF06325.13 gi|284176299|ref|YP_003406575.1| - 0.097 12.0 0.2 0.15 11.5 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2235 PF09994.9 gi|284176299|ref|YP_003406575.1| - 0.1 11.9 0.0 0.26 10.6 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized alpha/beta hydrolase domain (DUF2235) CarboxypepD_reg PF13620.6 gi|284176302|ref|YP_003406578.1| - 0.0069 16.6 8.8 0.64 10.3 0.1 4.2 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain Dioxygenase_C PF00775.21 gi|284176302|ref|YP_003406578.1| - 0.041 13.3 0.8 0.11 12.0 0.2 2.0 2 0 0 2 2 2 0 Dioxygenase CARDB PF07705.11 gi|284176302|ref|YP_003406578.1| - 0.86 9.9 5.1 16 5.8 3.1 3.5 3 0 0 3 3 3 0 CARDB Peptidase_S8 PF00082.22 gi|284176303|ref|YP_003406579.1| - 1.6e-25 90.0 3.8 2.3e-25 89.5 3.8 1.2 1 0 0 1 1 1 1 Subtilase family TAT_signal PF10518.9 gi|284176303|ref|YP_003406579.1| - 0.033 14.0 1.0 0.033 14.0 1.0 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_4 PF13407.6 gi|284176303|ref|YP_003406579.1| - 0.089 12.3 0.1 0.44 10.1 0.0 1.9 2 0 0 2 2 2 0 Periplasmic binding protein domain Sec23_trunk PF04811.15 gi|284176308|ref|YP_003406584.1| - 0.026 14.1 0.2 0.15 11.6 0.1 2.0 2 0 0 2 2 2 0 Sec23/Sec24 trunk domain LptE PF04390.12 gi|284176309|ref|YP_003406585.1| - 0.15 12.8 0.1 0.24 12.1 0.1 1.3 1 1 0 1 1 1 0 Lipopolysaccharide-assembly PSII PF00421.19 gi|284176310|ref|YP_003406586.1| - 0.0041 15.9 0.3 0.0043 15.8 0.3 1.0 1 0 0 1 1 1 1 Photosystem II protein Phage_holin_3_6 PF07332.11 gi|284176310|ref|YP_003406586.1| - 0.042 13.9 0.1 0.048 13.7 0.1 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF5395 PF17373.2 gi|284176311|ref|YP_003406587.1| - 0.14 12.8 0.1 0.27 11.9 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5395) PrgI PF12666.7 gi|284176313|ref|YP_003406589.1| - 0.056 14.2 1.5 0.067 13.9 0.4 1.7 2 0 0 2 2 2 0 PrgI family protein DUF2685 PF10886.8 gi|284176314|ref|YP_003406590.1| - 0.05 13.8 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2685) DUF2207 PF09972.9 gi|284176316|ref|YP_003406592.1| - 0.33 9.7 1.9 0.33 9.7 1.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AA_permease PF00324.21 gi|284176319|ref|YP_003406595.1| - 0.022 13.4 0.1 2.1 6.8 0.0 1.9 2 0 0 2 2 2 0 Amino acid permease TMF_TATA_bd PF12325.8 gi|284176319|ref|YP_003406595.1| - 0.07 13.4 4.7 0.13 12.5 4.7 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF2101 PF09874.9 gi|284176319|ref|YP_003406595.1| - 0.41 10.3 1.2 2.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2101) DUF3153 PF11353.8 gi|284176319|ref|YP_003406595.1| - 0.48 10.0 1.7 1.2 8.7 1.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3153) MRC1 PF09444.10 gi|284176319|ref|YP_003406595.1| - 1.5 9.3 6.9 2.8 8.4 6.9 1.3 1 0 0 1 1 1 0 MRC1-like domain VPDSG-CTERM PF18205.1 gi|284176320|ref|YP_003406596.1| - 0.052 13.4 1.1 0.14 12.0 1.1 1.7 1 0 0 1 1 1 0 VPDSG-CTERM motif GYR PF02756.14 gi|284176321|ref|YP_003406597.1| - 0.27 11.0 0.1 0.27 11.0 0.1 2.4 2 0 0 2 2 2 0 GYR motif MCM_OB PF17207.3 gi|284176323|ref|YP_003406599.1| - 1.2e-16 60.6 0.0 2.2e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_N PF14551.6 gi|284176323|ref|YP_003406599.1| - 0.0004 20.9 0.0 0.00087 19.8 0.0 1.5 1 0 0 1 1 1 1 MCM N-terminal domain DUF2399 PF09664.10 gi|284176324|ref|YP_003406600.1| - 0.064 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) HHH_5 PF14520.6 gi|284176326|ref|YP_003406602.1| - 2.8e-08 34.3 0.1 5.5e-08 33.3 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|284176326|ref|YP_003406602.1| - 4.3e-07 29.9 0.1 6.6e-07 29.3 0.1 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|284176326|ref|YP_003406602.1| - 0.0064 16.3 0.1 0.026 14.4 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif SHOCT PF09851.9 gi|284176326|ref|YP_003406602.1| - 0.0071 16.1 1.8 0.0071 16.1 1.8 2.2 2 0 0 2 2 2 1 Short C-terminal domain 5_3_exonuc PF01367.20 gi|284176326|ref|YP_003406602.1| - 0.11 13.1 0.0 20 5.9 0.0 2.4 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HTH_24 PF13412.6 gi|284176327|ref|YP_003406603.1| - 9.8e-05 21.8 0.0 0.00016 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|284176327|ref|YP_003406603.1| - 0.00045 20.1 0.0 0.00068 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|284176327|ref|YP_003406603.1| - 0.0036 17.1 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|284176327|ref|YP_003406603.1| - 0.0087 15.9 0.2 0.019 14.8 0.0 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|284176327|ref|YP_003406603.1| - 0.04 13.8 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 MarR family GerE PF00196.19 gi|284176327|ref|YP_003406603.1| - 0.084 12.4 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Mrr_cat PF04471.12 gi|284176328|ref|YP_003406604.1| - 5.7e-31 106.9 0.2 8.3e-31 106.4 0.2 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|284176328|ref|YP_003406604.1| - 1e-24 86.8 2.0 1.6e-24 86.3 2.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease HAD PF12710.7 gi|284176328|ref|YP_003406604.1| - 0.086 13.2 0.0 0.43 11.0 0.0 1.9 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase KAP_NTPase PF07693.14 gi|284176329|ref|YP_003406605.1| - 4.5e-28 98.4 0.0 2.3e-27 96.1 0.0 2.3 2 0 0 2 2 2 1 KAP family P-loop domain AAA_22 PF13401.6 gi|284176329|ref|YP_003406605.1| - 0.00015 22.0 0.8 0.037 14.3 0.0 4.2 4 1 0 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|284176329|ref|YP_003406605.1| - 0.0018 18.7 0.2 0.061 13.7 0.0 3.6 4 2 0 4 4 4 1 AAA ATPase domain AAA PF00004.29 gi|284176329|ref|YP_003406605.1| - 0.022 15.2 0.0 9.8 6.6 0.0 3.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|284176329|ref|YP_003406605.1| - 0.026 14.6 8.8 0.99 9.4 0.0 4.3 3 1 2 5 5 5 0 Helicase HerA, central domain ABC_tran PF00005.27 gi|284176329|ref|YP_003406605.1| - 0.079 13.5 0.0 0.079 13.5 0.0 3.7 5 1 0 5 5 5 0 ABC transporter DUF3800 PF12686.7 gi|284176329|ref|YP_003406605.1| - 0.079 13.6 0.0 13 6.5 0.0 3.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) SANT_DAMP1_like PF16282.5 gi|284176329|ref|YP_003406605.1| - 0.2 11.9 4.3 0.1 12.8 0.5 2.6 3 0 0 3 3 3 0 SANT/Myb-like domain of DAMP1 AAA_18 PF13238.6 gi|284176329|ref|YP_003406605.1| - 1.7 9.2 4.3 12 6.4 0.0 4.2 5 1 1 6 6 6 0 AAA domain Phage_integrase PF00589.22 gi|284176330|ref|YP_003406606.1| - 9.8e-13 48.3 0.2 5.4e-12 45.8 0.2 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|284176330|ref|YP_003406606.1| - 1.5e-05 25.3 0.0 3e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284176330|ref|YP_003406606.1| - 0.0024 18.1 0.0 0.0078 16.5 0.0 2.0 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Chitin_bind_4 PF00379.23 gi|284176330|ref|YP_003406606.1| - 0.14 12.7 0.0 8.5 7.0 0.0 2.7 2 0 0 2 2 2 0 Insect cuticle protein DUF1707 PF08044.11 gi|284176331|ref|YP_003406607.1| - 0.0029 17.6 0.3 0.0047 17.0 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) SHOCT PF09851.9 gi|284176331|ref|YP_003406607.1| - 0.015 15.0 0.7 0.027 14.2 0.7 1.4 1 0 0 1 1 1 0 Short C-terminal domain VbhA PF18495.1 gi|284176331|ref|YP_003406607.1| - 0.025 14.5 0.5 0.037 13.9 0.5 1.3 1 0 0 1 1 1 0 Antitoxin VbhA DUF3996 PF13161.6 gi|284176332|ref|YP_003406608.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) DUF2093 PF09866.9 gi|284176334|ref|YP_003406610.1| - 0.0014 18.0 0.0 0.0024 17.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2093) Zn-ribbon_8 PF09723.10 gi|284176335|ref|YP_003406611.1| - 0.00039 20.5 1.3 0.13 12.4 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284176335|ref|YP_003406611.1| - 0.0053 16.6 1.3 0.0085 16.0 1.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|284176335|ref|YP_003406611.1| - 0.0087 16.0 1.0 0.012 15.5 1.0 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|284176335|ref|YP_003406611.1| - 0.012 15.0 2.9 0.12 11.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|284176335|ref|YP_003406611.1| - 0.014 15.4 1.6 0.36 10.9 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin Lar_restr_allev PF14354.6 gi|284176335|ref|YP_003406611.1| - 0.016 15.6 0.3 0.02 15.2 0.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|284176335|ref|YP_003406611.1| - 0.016 14.7 2.7 0.23 11.0 2.4 2.3 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|284176335|ref|YP_003406611.1| - 0.022 14.4 1.7 0.86 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|284176335|ref|YP_003406611.1| - 0.097 13.3 2.0 1.5 9.6 0.7 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin_2 PF18073.1 gi|284176335|ref|YP_003406611.1| - 0.11 12.2 3.8 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Auto_anti-p27 PF06677.12 gi|284176335|ref|YP_003406611.1| - 0.12 12.5 0.9 3 8.1 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|284176335|ref|YP_003406611.1| - 0.13 12.3 1.4 2.9 8.0 0.0 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_5 PF13719.6 gi|284176335|ref|YP_003406611.1| - 0.14 11.9 1.0 12 5.7 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|284176335|ref|YP_003406611.1| - 0.14 12.3 4.4 1.9 8.7 4.4 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.9 gi|284176335|ref|YP_003406611.1| - 0.14 12.3 4.8 0.53 10.4 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|284176335|ref|YP_003406611.1| - 0.15 12.0 5.8 2.6 8.0 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2387 PF09526.10 gi|284176335|ref|YP_003406611.1| - 0.16 12.1 1.2 0.23 11.6 1.2 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) eIF-5_eIF-2B PF01873.17 gi|284176335|ref|YP_003406611.1| - 0.19 11.6 0.3 0.26 11.2 0.3 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-H2C2_2 PF13465.6 gi|284176335|ref|YP_003406611.1| - 0.64 10.5 3.0 1.7 9.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain ADK_lid PF05191.14 gi|284176335|ref|YP_003406611.1| - 0.9 9.6 6.5 1.8 8.6 0.0 2.6 3 0 0 3 3 3 0 Adenylate kinase, active site lid SPOR PF05036.13 gi|284176340|ref|YP_003406616.1| - 0.0014 18.9 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 2 Sporulation related domain zf-BED PF02892.15 gi|284176340|ref|YP_003406616.1| - 0.12 12.4 0.3 0.29 11.2 0.0 1.7 2 0 0 2 2 2 0 BED zinc finger COP23 PF14218.6 gi|284176341|ref|YP_003406617.1| - 0.077 12.8 0.0 0.098 12.4 0.0 1.1 1 0 0 1 1 1 0 Circadian oscillating protein COP23 HIRAN PF08797.11 gi|284176342|ref|YP_003406618.1| - 0.053 13.4 0.0 0.067 13.1 0.0 1.1 1 0 0 1 1 1 0 HIRAN domain Phage_holin_2_4 PF16082.5 gi|284176345|ref|YP_003406621.1| - 0.016 15.0 0.6 0.021 14.6 0.6 1.3 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like Trp_oprn_chp PF09534.10 gi|284176345|ref|YP_003406621.1| - 0.045 13.5 1.8 0.079 12.7 1.8 1.5 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3180 PF11377.8 gi|284176345|ref|YP_003406621.1| - 6.1 7.0 13.6 0.21 11.7 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3180) N6-adenineMlase PF10237.9 gi|284176350|ref|YP_003406626.1| - 0.05 13.4 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase Phage_G PF02306.15 gi|284176350|ref|YP_003406626.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Major spike protein (G protein) Pilin_N PF07790.11 gi|284176351|ref|YP_003406627.1| - 1.3e-14 54.9 2.0 2.7e-14 53.8 2.0 1.5 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal MDMPI_N PF11716.8 gi|284176352|ref|YP_003406628.1| - 0.4 11.4 7.5 0.074 13.7 4.2 1.5 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain AAA_31 PF13614.6 gi|284176353|ref|YP_003406629.1| - 8.2e-19 68.2 0.0 1.1e-18 67.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284176353|ref|YP_003406629.1| - 1.7e-08 34.6 0.0 2.1e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|284176353|ref|YP_003406629.1| - 7.9e-05 22.1 0.0 0.17 11.1 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|284176353|ref|YP_003406629.1| - 0.022 13.9 0.9 0.07 12.3 0.8 2.0 2 1 0 2 2 2 0 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|284176353|ref|YP_003406629.1| - 0.036 13.5 0.0 6.8 6.1 0.0 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284176353|ref|YP_003406629.1| - 0.1 12.0 0.0 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase CxC7 PF18866.1 gi|284176355|ref|YP_003406631.1| - 0.046 13.9 0.0 0.063 13.4 0.0 1.3 1 0 0 1 1 1 0 CxC7 like cysteine cluster associated with KDZ transposases OrfB_Zn_ribbon PF07282.11 gi|284176355|ref|YP_003406631.1| - 0.089 12.7 0.3 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|284176355|ref|YP_003406631.1| - 1.8 8.9 4.8 4.9 7.5 4.8 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Prok-RING_1 PF14446.6 gi|284176358|ref|YP_003406634.1| - 0.021 14.8 0.1 0.025 14.5 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|284176359|ref|YP_003406635.1| - 0.00015 21.0 2.8 0.013 14.8 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|284176359|ref|YP_003406635.1| - 0.00086 19.3 0.8 0.001 19.1 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|284176359|ref|YP_003406635.1| - 0.0022 18.0 1.2 0.018 15.2 0.2 2.0 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|284176359|ref|YP_003406635.1| - 0.0027 17.6 4.5 0.09 12.8 1.8 2.0 1 1 1 2 2 2 2 Transposase zinc-ribbon domain RNHCP PF12647.7 gi|284176359|ref|YP_003406635.1| - 0.0065 16.4 0.6 0.0066 16.4 0.6 1.0 1 0 0 1 1 1 1 RNHCP domain C1_1 PF00130.22 gi|284176359|ref|YP_003406635.1| - 0.0092 15.8 0.4 0.01 15.7 0.4 1.1 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-CHCC PF10276.9 gi|284176359|ref|YP_003406635.1| - 0.011 15.7 0.4 3 8.0 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-ISL3 PF14690.6 gi|284176359|ref|YP_003406635.1| - 0.011 16.3 2.1 0.28 11.9 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.6 gi|284176359|ref|YP_003406635.1| - 0.012 15.3 5.7 0.033 13.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.12 gi|284176359|ref|YP_003406635.1| - 0.013 15.3 2.2 0.098 12.4 0.2 2.0 2 0 0 2 2 2 0 HypF finger Ogr_Delta PF04606.12 gi|284176359|ref|YP_003406635.1| - 0.019 14.9 3.4 0.23 11.5 0.4 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.9 gi|284176359|ref|YP_003406635.1| - 0.021 14.9 1.8 0.68 10.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Glutaredoxin PF00462.24 gi|284176359|ref|YP_003406635.1| - 0.024 14.9 4.0 0.63 10.3 0.3 2.0 1 1 1 2 2 2 0 Glutaredoxin zf-Di19 PF05605.12 gi|284176359|ref|YP_003406635.1| - 0.026 14.8 5.5 0.27 11.5 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C3HC4_3 PF13920.6 gi|284176359|ref|YP_003406635.1| - 0.038 13.9 1.8 0.39 10.6 1.8 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_7 PF02591.15 gi|284176359|ref|YP_003406635.1| - 0.038 14.2 4.0 0.33 11.2 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Molybdop_Fe4S4 PF04879.16 gi|284176359|ref|YP_003406635.1| - 0.042 13.8 3.2 1.3 9.1 0.3 2.1 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain zf-ACC PF17848.1 gi|284176359|ref|YP_003406635.1| - 0.048 13.7 1.7 0.45 10.6 0.1 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|284176359|ref|YP_003406635.1| - 0.048 13.7 0.6 0.049 13.7 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cys_rich_CPXG PF14255.6 gi|284176359|ref|YP_003406635.1| - 0.063 13.2 5.7 0.12 12.2 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-C2H2_4 PF13894.6 gi|284176359|ref|YP_003406635.1| - 0.067 14.1 1.3 4.3 8.5 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|284176359|ref|YP_003406635.1| - 0.099 12.7 0.2 0.099 12.7 0.2 1.9 1 1 1 2 2 2 0 CpXC protein Lar_restr_allev PF14354.6 gi|284176359|ref|YP_003406635.1| - 0.11 12.9 2.8 0.23 11.9 2.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|284176359|ref|YP_003406635.1| - 0.11 12.0 2.5 1.4 8.5 0.2 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 gi|284176359|ref|YP_003406635.1| - 0.23 11.8 5.9 0.42 10.9 0.6 2.1 1 1 1 2 2 2 0 zinc-ribbon NRDD PF13597.6 gi|284176359|ref|YP_003406635.1| - 0.26 10.0 0.8 0.27 10.0 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TerY_C PF15616.6 gi|284176359|ref|YP_003406635.1| - 0.31 11.1 3.6 1.1 9.4 3.6 1.8 1 1 0 1 1 1 0 TerY-C metal binding domain DUF3470 PF11953.8 gi|284176360|ref|YP_003406636.1| - 0.095 12.7 2.0 1.6 8.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3470) zinc_ribbon_10 PF10058.9 gi|284176361|ref|YP_003406637.1| - 0.00017 21.2 0.0 0.0045 16.7 0.1 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein DUF2310 PF10071.9 gi|284176361|ref|YP_003406637.1| - 0.14 11.4 0.7 0.19 10.9 0.7 1.2 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) DUF150_C PF17384.2 gi|284176362|ref|YP_003406638.1| - 0.051 13.7 0.1 0.099 12.8 0.1 1.5 1 0 0 1 1 1 0 RimP C-terminal SH3 domain PadR PF03551.14 gi|284176363|ref|YP_003406639.1| - 7.5e-13 48.2 0.1 9.2e-13 48.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284176363|ref|YP_003406639.1| - 0.021 14.8 0.0 0.029 14.3 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix DUF1495 PF07381.11 gi|284176363|ref|YP_003406639.1| - 0.073 12.9 0.0 0.097 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DnaJ PF00226.31 gi|284176365|ref|YP_003406641.1| - 1.4e-08 34.7 0.0 3.5e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 DnaJ domain DUF4762 PF15959.5 gi|284176368|ref|YP_003406644.1| - 0.18 11.8 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4762) HTH_IclR PF09339.10 gi|284176373|ref|YP_003406649.1| - 5.1e-06 26.2 0.0 7.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|284176373|ref|YP_003406649.1| - 3e-05 23.8 0.0 3.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284176373|ref|YP_003406649.1| - 0.00018 21.3 0.1 0.00021 21.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|284176373|ref|YP_003406649.1| - 0.00042 20.3 0.1 0.00063 19.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284176373|ref|YP_003406649.1| - 0.0038 17.1 0.0 0.0048 16.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|284176373|ref|YP_003406649.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284176373|ref|YP_003406649.1| - 0.061 12.9 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|284176373|ref|YP_003406649.1| - 0.094 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 gi|284176373|ref|YP_003406649.1| - 0.097 12.6 0.0 0.33 10.9 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|284176373|ref|YP_003406649.1| - 0.1 12.9 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|284176373|ref|YP_003406649.1| - 0.16 12.5 0.0 0.19 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DNA_methylase PF00145.17 gi|284176374|ref|YP_003406650.1| - 9.1e-33 114.0 0.0 9.8e-21 74.4 0.0 2.9 2 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase DZR PF12773.7 gi|284176376|ref|YP_003406652.1| - 1.4e-06 28.2 45.1 0.059 13.4 0.7 6.6 4 2 2 6 6 6 5 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|284176376|ref|YP_003406652.1| - 0.014 15.3 2.4 0.014 15.3 2.4 7.2 7 2 1 8 8 8 0 SprT-like zinc ribbon domain Anti-TRAP PF15777.5 gi|284176376|ref|YP_003406652.1| - 0.024 14.6 3.4 0.024 14.6 3.4 6.5 5 3 2 8 8 8 0 Tryptophan RNA-binding attenuator protein inhibitory protein SspH PF08141.12 gi|284176376|ref|YP_003406652.1| - 0.098 12.8 0.1 0.18 12.0 0.1 1.4 1 0 0 1 1 1 0 Small acid-soluble spore protein H family HypA PF01155.19 gi|284176376|ref|YP_003406652.1| - 0.56 10.2 33.2 5.5 7.0 1.4 6.3 5 1 1 6 6 6 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_20 PF12840.7 gi|284176379|ref|YP_003406655.1| - 2e-07 30.9 0.1 2.5e-07 30.7 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284176379|ref|YP_003406655.1| - 6.9e-06 25.7 0.0 8.4e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|284176379|ref|YP_003406655.1| - 0.00016 21.5 0.0 0.00021 21.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_39 PF14090.6 gi|284176379|ref|YP_003406655.1| - 0.00021 20.9 0.1 0.00028 20.6 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|284176379|ref|YP_003406655.1| - 0.00027 20.7 0.0 0.0003 20.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|284176379|ref|YP_003406655.1| - 0.00039 20.2 0.1 0.0006 19.6 0.1 1.2 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 gi|284176379|ref|YP_003406655.1| - 0.0007 19.3 0.1 0.00087 19.0 0.1 1.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284176379|ref|YP_003406655.1| - 0.0016 18.3 0.0 0.0019 18.0 0.0 1.1 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|284176379|ref|YP_003406655.1| - 0.0027 18.1 0.0 0.0032 17.8 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor MarR PF01047.22 gi|284176379|ref|YP_003406655.1| - 0.0051 16.7 0.0 0.0075 16.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284176379|ref|YP_003406655.1| - 0.008 15.7 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284176379|ref|YP_003406655.1| - 0.0087 15.9 0.3 0.035 13.9 0.2 1.9 1 1 1 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284176379|ref|YP_003406655.1| - 0.015 15.2 0.1 0.018 15.0 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|284176379|ref|YP_003406655.1| - 0.016 15.1 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|284176379|ref|YP_003406655.1| - 0.025 14.9 0.0 0.03 14.7 0.0 1.1 1 0 0 1 1 1 0 FaeA-like protein HTH_5 PF01022.20 gi|284176379|ref|YP_003406655.1| - 0.041 13.7 0.0 0.051 13.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|284176379|ref|YP_003406655.1| - 0.043 13.6 0.1 0.072 12.9 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Ribosomal_S25 PF03297.15 gi|284176379|ref|YP_003406655.1| - 0.046 13.9 0.0 0.048 13.9 0.0 1.1 1 0 0 1 1 1 0 S25 ribosomal protein Fe_dep_repress PF01325.19 gi|284176379|ref|YP_003406655.1| - 0.054 13.7 0.0 0.071 13.3 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_NinH PF06322.11 gi|284176379|ref|YP_003406655.1| - 0.079 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Phage NinH protein TBPIP PF07106.13 gi|284176379|ref|YP_003406655.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain Cep57_MT_bd PF06657.13 gi|284176380|ref|YP_003406656.1| - 0.01 16.3 0.4 0.15 12.5 0.0 2.4 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 SlyX PF04102.12 gi|284176380|ref|YP_003406656.1| - 0.034 14.8 0.9 0.079 13.6 0.3 2.0 2 1 0 2 2 2 0 SlyX YtzH PF14165.6 gi|284176380|ref|YP_003406656.1| - 0.057 13.8 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 YtzH-like protein KLRAQ PF10205.9 gi|284176380|ref|YP_003406656.1| - 0.17 12.1 0.8 0.31 11.3 0.8 1.5 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein PspB PF06667.12 gi|284176380|ref|YP_003406656.1| - 0.27 11.3 1.8 17 5.6 0.1 2.4 2 0 0 2 2 2 0 Phage shock protein B HNH_5 PF14279.6 gi|284176381|ref|YP_003406657.1| - 2e-09 37.2 0.3 3.8e-09 36.3 0.3 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|284176381|ref|YP_003406657.1| - 2.8e-07 30.6 2.6 5.5e-07 29.7 2.6 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_4 PF13395.6 gi|284176381|ref|YP_003406657.1| - 0.00019 21.3 0.1 0.0004 20.2 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease HTH_11 PF08279.12 gi|284176382|ref|YP_003406658.1| - 3.9e-06 26.7 0.0 9.8e-06 25.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|284176382|ref|YP_003406658.1| - 0.00014 21.7 0.0 0.00032 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284176382|ref|YP_003406658.1| - 0.00066 19.5 0.1 0.19 11.6 0.0 3.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|284176382|ref|YP_003406658.1| - 0.0015 18.3 0.0 0.0049 16.6 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|284176382|ref|YP_003406658.1| - 0.002 18.1 0.0 0.0055 16.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_20 PF12840.7 gi|284176382|ref|YP_003406658.1| - 0.0024 17.9 0.1 0.018 15.1 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284176382|ref|YP_003406658.1| - 0.0048 16.4 0.0 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|284176382|ref|YP_003406658.1| - 0.014 15.2 0.1 1.4 8.9 0.0 2.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284176382|ref|YP_003406658.1| - 0.016 15.1 0.1 0.05 13.5 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|284176382|ref|YP_003406658.1| - 0.022 14.7 0.0 0.086 12.8 0.0 2.0 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|284176382|ref|YP_003406658.1| - 0.027 14.2 0.0 0.13 12.1 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Zn_Tnp_IS1595 PF12760.7 gi|284176382|ref|YP_003406658.1| - 0.041 13.9 0.2 0.11 12.5 0.2 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TetR_N PF00440.23 gi|284176382|ref|YP_003406658.1| - 0.047 13.5 0.1 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Zn-ribbon_8 PF09723.10 gi|284176382|ref|YP_003406658.1| - 0.15 12.2 0.4 0.37 10.9 0.4 1.7 1 0 0 1 1 1 0 Zinc ribbon domain OAM_alpha PF16552.5 gi|284176383|ref|YP_003406659.1| - 0.14 12.0 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 D-ornithine 4,5-aminomutase alpha-subunit RNA_pol_Rpb6 PF01192.22 gi|284176384|ref|YP_003406660.1| - 0.017 15.0 0.1 0.075 13.0 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase Rpb6 Mrr_N PF14338.6 gi|284176384|ref|YP_003406660.1| - 0.034 14.3 0.0 0.045 13.9 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_45 PF14947.6 gi|284176384|ref|YP_003406660.1| - 0.066 13.2 0.0 0.08 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3658 PF12395.8 gi|284176384|ref|YP_003406660.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function PIN_3 PF13470.6 gi|284176387|ref|YP_003406663.1| - 0.0022 18.7 0.0 0.0036 18.0 0.0 1.4 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|284176387|ref|YP_003406663.1| - 0.049 14.1 0.1 0.11 13.0 0.1 1.5 1 1 0 1 1 1 0 PIN domain AAA_22 PF13401.6 gi|284176388|ref|YP_003406664.1| - 7.2e-11 42.5 0.0 1.9e-09 37.9 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284176388|ref|YP_003406664.1| - 1.7e-07 31.8 1.1 2e-06 28.3 0.3 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284176388|ref|YP_003406664.1| - 7e-06 26.5 0.1 0.00012 22.5 0.0 2.9 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284176388|ref|YP_003406664.1| - 0.0023 17.7 0.0 0.0041 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|284176388|ref|YP_003406664.1| - 0.0033 17.4 0.1 1.4 8.7 0.0 2.9 3 1 0 3 3 3 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|284176388|ref|YP_003406664.1| - 0.0036 17.2 0.4 0.8 9.5 0.1 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_assoc_2 PF16193.5 gi|284176388|ref|YP_003406664.1| - 0.0057 17.0 0.1 0.015 15.7 0.1 1.7 1 0 0 1 1 1 1 AAA C-terminal domain RNA_helicase PF00910.22 gi|284176388|ref|YP_003406664.1| - 0.0088 16.4 0.0 0.057 13.8 0.0 2.4 2 1 0 2 2 2 1 RNA helicase AAA_18 PF13238.6 gi|284176388|ref|YP_003406664.1| - 0.0089 16.6 0.0 0.1 13.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain FUR PF01475.19 gi|284176388|ref|YP_003406664.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_32 PF13565.6 gi|284176388|ref|YP_003406664.1| - 0.012 16.3 0.1 0.065 13.9 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain AAA_5 PF07728.14 gi|284176388|ref|YP_003406664.1| - 0.017 15.1 0.0 0.075 13.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AP_endonuc_2 PF01261.24 gi|284176388|ref|YP_003406664.1| - 0.035 13.5 0.1 0.07 12.6 0.1 1.5 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel AAA_11 PF13086.6 gi|284176388|ref|YP_003406664.1| - 0.039 13.7 0.2 0.15 11.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain tRNA_lig_kinase PF08303.11 gi|284176388|ref|YP_003406664.1| - 0.044 13.9 0.0 0.074 13.1 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain bMG5 PF17972.1 gi|284176388|ref|YP_003406664.1| - 0.072 13.5 0.0 0.18 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial Alpha-2-macroglobulin MG5 domain ABC_tran PF00005.27 gi|284176388|ref|YP_003406664.1| - 0.091 13.3 0.1 0.58 10.7 0.0 2.3 2 2 0 2 2 2 0 ABC transporter RuvB_N PF05496.12 gi|284176388|ref|YP_003406664.1| - 0.094 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|284176388|ref|YP_003406664.1| - 0.097 12.4 0.0 0.32 10.7 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|284176388|ref|YP_003406664.1| - 0.1 12.5 0.1 0.42 10.5 0.1 2.0 2 1 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|284176388|ref|YP_003406664.1| - 0.36 11.2 1.7 3.7 7.9 1.0 2.6 2 1 0 2 2 2 0 AAA domain CxC4 PF18717.1 gi|284176390|ref|YP_003406666.1| - 0.0044 16.9 0.3 0.0053 16.6 0.3 1.1 1 0 0 1 1 1 1 CxC4 like cysteine cluster associated with KDZ transposases CxC3 PF18804.1 gi|284176390|ref|YP_003406666.1| - 0.012 15.4 0.2 0.015 15.1 0.2 1.1 1 0 0 1 1 1 0 CxC3 like cysteine cluster associated with KDZ transposases C1_1 PF00130.22 gi|284176390|ref|YP_003406666.1| - 0.029 14.2 0.5 0.041 13.8 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013748.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013748.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013748.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013748.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 15:21:42 2019 # [ok]