#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Response_reg	PF00072.19	gi|284172859|ref|YP_003406240.1|	-	2.5e-16	59.6	0.4	2.9e-16	59.4	0.3	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
zinc-ribbons_6	PF07191.7	gi|284172860|ref|YP_003406241.1|	-	0.0038	16.9	8.8	0.014	15.1	0.9	2.5	2	0	0	2	2	2	1	zinc-ribbons
DZR	PF12773.2	gi|284172860|ref|YP_003406241.1|	-	0.0044	16.8	12.4	0.41	10.4	2.5	2.5	1	1	2	3	3	3	3	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|284172860|ref|YP_003406241.1|	-	0.036	13.8	0.1	0.036	13.8	0.1	3.6	3	1	1	4	4	3	0	Transposase	zinc-ribbon	domain
HypA	PF01155.14	gi|284172860|ref|YP_003406241.1|	-	0.14	11.8	11.5	1.7	8.3	0.4	3.2	1	1	2	3	3	3	0	Hydrogenase	expression/synthesis	hypA	family
C1_4	PF07975.7	gi|284172860|ref|YP_003406241.1|	-	0.23	11.4	11.1	0.4	10.7	2.1	3.3	3	1	0	3	3	3	0	TFIIH	C1-like	domain
Nudix_N_2	PF14803.1	gi|284172860|ref|YP_003406241.1|	-	0.28	10.9	16.4	0.35	10.5	1.7	4.8	4	1	0	4	4	4	0	Nudix	N-terminal
Rubredoxin	PF00301.15	gi|284172860|ref|YP_003406241.1|	-	0.63	9.9	10.6	11	6.0	3.2	3.8	3	1	0	3	3	3	0	Rubredoxin
zinc_ribbon_4	PF13717.1	gi|284172860|ref|YP_003406241.1|	-	0.95	9.2	8.6	0.96	9.2	0.0	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
C1_3	PF07649.7	gi|284172860|ref|YP_003406241.1|	-	1.2	9.2	12.9	25	5.0	0.1	4.4	4	0	0	4	4	4	0	C1-like	domain
zf-HIT	PF04438.11	gi|284172860|ref|YP_003406241.1|	-	1.7	8.3	8.3	15	5.3	0.0	3.9	3	1	1	4	4	4	0	HIT	zinc	finger
zinc_ribbon_5	PF13719.1	gi|284172860|ref|YP_003406241.1|	-	1.8	8.1	9.7	1.1	8.9	0.0	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|284172860|ref|YP_003406241.1|	-	2.1	7.8	12.4	17	5.0	0.2	4.3	4	0	0	4	4	4	0	A2L	zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|284172860|ref|YP_003406241.1|	-	4.3	6.9	13.7	1.3	8.5	0.5	4.2	4	0	0	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
PhnA_Zn_Ribbon	PF08274.7	gi|284172860|ref|YP_003406241.1|	-	5.3	6.9	16.2	2.4	7.9	0.1	3.9	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
FYVE	PF01363.16	gi|284172860|ref|YP_003406241.1|	-	6.2	6.7	10.5	1.2	9.1	1.3	2.7	1	1	1	2	2	2	0	FYVE	zinc	finger
PIN	PF01850.16	gi|284172861|ref|YP_003406242.1|	-	0.018	15.3	0.7	0.035	14.4	0.3	1.6	1	1	1	2	2	2	0	PIN	domain
DUF2191	PF09957.4	gi|284172863|ref|YP_003406244.1|	-	0.55	10.0	2.5	1.2	9.0	1.7	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
HTH_20	PF12840.2	gi|284172864|ref|YP_003406245.1|	-	0.00035	20.3	0.2	0.0014	18.3	0.1	2.0	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|284172864|ref|YP_003406245.1|	-	0.13	11.8	0.0	7.9	6.2	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HNH	PF01844.18	gi|284172866|ref|YP_003406247.1|	-	1.5e-06	27.9	0.0	3.2e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	HNH	endonuclease
HNH_2	PF13391.1	gi|284172866|ref|YP_003406247.1|	-	0.0006	19.5	0.0	0.0012	18.5	0.0	1.6	1	0	0	1	1	1	1	HNH	endonuclease
Regulator_TrmB	PF11495.3	gi|284172868|ref|YP_003406249.1|	-	0.00049	19.1	0.0	0.00083	18.4	0.0	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_12	PF08461.5	gi|284172868|ref|YP_003406249.1|	-	0.003	17.2	0.2	1.6	8.4	0.0	3.1	2	1	0	2	2	2	2	Ribonuclease	R	winged-helix	domain
Autophagy_act_C	PF03987.10	gi|284172868|ref|YP_003406249.1|	-	0.13	12.5	0.6	26	5.0	0.7	3.2	2	2	0	2	2	2	0	Autophagocytosis	associated	protein,	active-site	domain
HTH_20	PF12840.2	gi|284172868|ref|YP_003406249.1|	-	0.39	10.5	2.6	5.5	6.8	0.0	3.4	4	0	0	4	4	4	0	Helix-turn-helix	domain
Arch_ATPase	PF01637.13	gi|284172869|ref|YP_003406250.1|	-	3e-31	108.9	0.0	7.1e-31	107.7	0.0	1.7	1	1	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|284172869|ref|YP_003406250.1|	-	4.3e-21	74.9	0.0	9.4e-21	73.8	0.0	1.6	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_22	PF13401.1	gi|284172869|ref|YP_003406250.1|	-	2e-07	31.2	0.0	3.8e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|284172869|ref|YP_003406250.1|	-	4.9e-07	29.7	0.0	8.7e-07	28.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
MarR_2	PF12802.2	gi|284172869|ref|YP_003406250.1|	-	0.00035	20.1	0.0	0.0013	18.3	0.0	1.9	2	0	0	2	2	2	1	MarR	family
Mrr_cat	PF04471.7	gi|284172869|ref|YP_003406250.1|	-	0.0026	17.5	0.0	0.0054	16.5	0.0	1.6	1	0	0	1	1	1	1	Restriction	endonuclease
TrmB	PF01978.14	gi|284172869|ref|YP_003406250.1|	-	0.0056	16.3	0.0	0.011	15.3	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
AAA_16	PF13191.1	gi|284172869|ref|YP_003406250.1|	-	0.017	15.0	0.1	0.11	12.4	0.0	2.1	1	1	1	2	2	2	0	AAA	ATPase	domain
HTH_20	PF12840.2	gi|284172869|ref|YP_003406250.1|	-	0.041	13.6	0.0	0.09	12.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Miro	PF08477.8	gi|284172869|ref|YP_003406250.1|	-	0.064	13.7	0.0	0.13	12.8	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
HTH_Crp_2	PF13545.1	gi|284172869|ref|YP_003406250.1|	-	0.14	11.9	0.0	0.27	11.0	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DiS_P_DiS	PF06750.8	gi|284172870|ref|YP_003406251.1|	-	0.094	12.5	0.1	0.15	11.8	0.1	1.5	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
DoxX	PF07681.7	gi|284172871|ref|YP_003406252.1|	-	5.9e-16	58.6	12.4	5.9e-16	58.6	8.6	1.5	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.8	gi|284172871|ref|YP_003406252.1|	-	1.8e-06	27.7	2.3	1.8e-06	27.7	1.6	1.6	2	0	0	2	2	2	1	TQO	small	subunit	DoxD
DUF2457	PF10446.4	gi|284172872|ref|YP_003406253.1|	-	0.15	10.7	9.6	0.2	10.3	6.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
TRAP_alpha	PF03896.11	gi|284172872|ref|YP_003406253.1|	-	6.7	5.6	5.9	9.5	5.1	4.1	1.1	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
DUF3824	PF12868.2	gi|284172874|ref|YP_003406255.1|	-	0.0092	16.9	0.8	0.013	16.4	0.6	1.1	1	0	0	1	1	1	1	Domain	of	unknwon	function	(DUF3824)
DUF3359	PF11839.3	gi|284172874|ref|YP_003406255.1|	-	0.083	13.2	0.0	0.17	12.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3359)
Spore_YhcN_YlaJ	PF09580.5	gi|284172874|ref|YP_003406255.1|	-	0.19	11.8	4.9	0.27	11.3	3.4	1.4	1	1	0	1	1	1	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
LPAM_1	PF08139.7	gi|284172874|ref|YP_003406255.1|	-	0.23	11.7	1.5	0.53	10.6	1.0	1.6	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
FAM176	PF14851.1	gi|284172874|ref|YP_003406255.1|	-	0.91	9.1	3.1	1.3	8.6	2.2	1.2	1	0	0	1	1	1	0	FAM176	family
YqfQ	PF14181.1	gi|284172874|ref|YP_003406255.1|	-	7.6	6.5	7.5	12	5.9	5.2	1.2	1	0	0	1	1	1	0	YqfQ-like	protein
HTH_22	PF13309.1	gi|284172875|ref|YP_003406256.1|	-	0.15	11.8	0.3	14	5.4	0.0	3.3	2	1	1	3	3	3	0	HTH	domain
Bac_globin	PF01152.16	gi|284172877|ref|YP_003406258.1|	-	1.4e-21	76.7	0.1	1.5e-21	76.6	0.0	1.0	1	0	0	1	1	1	1	Bacterial-like	globin
Protoglobin	PF11563.3	gi|284172877|ref|YP_003406258.1|	-	0.00018	21.1	0.1	0.00039	20.0	0.0	1.8	1	1	0	1	1	1	1	Protoglobin
Usp	PF00582.21	gi|284172878|ref|YP_003406259.1|	-	3.4e-09	37.0	0.2	2.1e-08	34.4	0.2	1.9	1	1	0	1	1	1	1	Universal	stress	protein	family
SBP_bac_11	PF13531.1	gi|284172878|ref|YP_003406259.1|	-	0.13	11.8	0.0	0.45	10.1	0.0	1.7	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	protein
DUF1272	PF06906.6	gi|284172880|ref|YP_003406261.1|	-	8.5e-07	28.7	0.7	9.2e-07	28.6	0.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zf-C2HC5	PF06221.8	gi|284172880|ref|YP_003406261.1|	-	2.3e-05	24.0	0.7	2.4e-05	24.0	0.5	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
HypA	PF01155.14	gi|284172880|ref|YP_003406261.1|	-	0.00035	20.2	0.7	0.00037	20.1	0.5	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|284172880|ref|YP_003406261.1|	-	0.0011	18.4	2.1	0.24	10.9	0.5	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|284172880|ref|YP_003406261.1|	-	0.0014	18.4	3.2	0.0078	16.1	2.2	1.9	1	1	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.2	gi|284172880|ref|YP_003406261.1|	-	0.0027	17.4	1.4	0.0035	17.1	0.9	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|284172880|ref|YP_003406261.1|	-	0.0071	15.5	3.5	0.72	9.1	0.6	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|284172880|ref|YP_003406261.1|	-	0.012	15.6	1.3	0.02	14.8	0.9	1.4	1	0	0	1	1	1	0	zinc-finger
Elf1	PF05129.8	gi|284172880|ref|YP_003406261.1|	-	0.018	14.7	0.7	0.062	13.0	0.5	1.8	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
OrfB_Zn_ribbon	PF07282.6	gi|284172880|ref|YP_003406261.1|	-	0.022	14.4	0.4	0.025	14.2	0.3	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Sgf11	PF08209.6	gi|284172880|ref|YP_003406261.1|	-	0.024	13.9	2.2	1.3	8.4	0.0	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Spt4	PF06093.8	gi|284172880|ref|YP_003406261.1|	-	0.026	14.4	0.6	0.033	14.0	0.4	1.2	1	0	0	1	1	1	0	Spt4/RpoE2	zinc	finger
zf-AN1	PF01428.11	gi|284172880|ref|YP_003406261.1|	-	0.044	13.6	1.5	0.18	11.6	1.2	1.7	1	1	1	2	2	2	0	AN1-like	Zinc	finger
Prim_Zn_Ribbon	PF08273.7	gi|284172880|ref|YP_003406261.1|	-	0.056	13.5	2.3	0.056	13.5	1.6	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
RNHCP	PF12647.2	gi|284172880|ref|YP_003406261.1|	-	0.059	13.1	2.8	0.063	13.1	1.5	1.4	1	1	0	1	1	1	0	RNHCP	domain
Prok-RING_4	PF14447.1	gi|284172880|ref|YP_003406261.1|	-	0.065	12.7	0.5	0.081	12.4	0.3	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
DUF1451	PF07295.6	gi|284172880|ref|YP_003406261.1|	-	0.12	12.1	0.9	0.12	12.1	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
TF_Zn_Ribbon	PF08271.7	gi|284172880|ref|YP_003406261.1|	-	0.16	11.3	1.9	0.56	9.5	0.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-C4_Topoisom	PF01396.14	gi|284172880|ref|YP_003406261.1|	-	0.17	11.4	1.7	0.29	10.6	0.2	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
PhnA_Zn_Ribbon	PF08274.7	gi|284172880|ref|YP_003406261.1|	-	0.17	11.6	1.1	1.5	8.6	0.7	2.2	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Nudix_N_2	PF14803.1	gi|284172880|ref|YP_003406261.1|	-	0.18	11.5	4.8	4.2	7.1	0.2	2.4	3	0	0	3	3	2	0	Nudix	N-terminal
UPF0547	PF10571.4	gi|284172880|ref|YP_003406261.1|	-	0.22	11.2	4.0	0.67	9.7	2.8	1.8	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
ADK_lid	PF05191.9	gi|284172880|ref|YP_003406261.1|	-	0.23	11.1	1.1	0.89	9.2	0.8	1.8	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
DUF329	PF03884.9	gi|284172880|ref|YP_003406261.1|	-	0.23	11.0	1.6	6.9	6.3	0.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-IS66	PF13005.2	gi|284172880|ref|YP_003406261.1|	-	0.25	11.3	2.1	0.38	10.7	0.2	1.9	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_Tnp_IS1595	PF12760.2	gi|284172880|ref|YP_003406261.1|	-	0.33	10.7	3.3	3.7	7.4	0.3	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|284172880|ref|YP_003406261.1|	-	0.42	10.2	1.9	15	5.2	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
CpXC	PF14353.1	gi|284172880|ref|YP_003406261.1|	-	0.54	10.2	2.3	3.1	7.7	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
DUF1610	PF07754.6	gi|284172880|ref|YP_003406261.1|	-	1.2	9.2	6.4	20	5.3	3.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
YhfH	PF14149.1	gi|284172880|ref|YP_003406261.1|	-	1.9	8.3	5.6	12	5.8	0.3	2.1	1	1	1	2	2	2	0	YhfH-like	protein
PadR	PF03551.9	gi|284172881|ref|YP_003406262.1|	-	8.6e-12	44.6	0.2	1e-11	44.4	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.14	gi|284172881|ref|YP_003406262.1|	-	0.054	13.4	0.0	0.063	13.1	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF4358	PF14270.1	gi|284172881|ref|YP_003406262.1|	-	0.1	12.5	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
HTH_45	PF14947.1	gi|284172881|ref|YP_003406262.1|	-	0.13	12.0	0.1	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_CodY	PF08222.6	gi|284172884|ref|YP_003406265.1|	-	0.0095	15.2	0.0	0.017	14.4	0.0	1.4	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_20	PF12840.2	gi|284172884|ref|YP_003406265.1|	-	0.076	12.8	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
PIN	PF01850.16	gi|284172885|ref|YP_003406266.1|	-	5.3e-15	55.8	0.2	6.4e-15	55.5	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_20	PF12840.2	gi|284172886|ref|YP_003406267.1|	-	0.0071	16.1	0.0	0.013	15.2	0.0	1.5	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|284172887|ref|YP_003406268.1|	-	1.1e-05	24.9	0.2	1.8e-05	24.2	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
MerR	PF00376.18	gi|284172887|ref|YP_003406268.1|	-	0.00026	20.4	0.1	0.00065	19.2	0.0	1.7	1	0	0	1	1	1	1	MerR	family	regulatory	protein
HTH_24	PF13412.1	gi|284172887|ref|YP_003406268.1|	-	0.0036	16.6	0.2	0.0081	15.5	0.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|284172887|ref|YP_003406268.1|	-	0.0065	16.0	0.6	0.015	14.9	0.2	1.8	2	0	0	2	2	2	1	Homeodomain-like	domain
GntR	PF00392.16	gi|284172887|ref|YP_003406268.1|	-	0.0068	15.8	0.1	0.021	14.2	0.1	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MerR_1	PF13411.1	gi|284172887|ref|YP_003406268.1|	-	0.02	14.6	0.0	0.037	13.7	0.0	1.4	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
DAO	PF01266.19	gi|284172887|ref|YP_003406268.1|	-	0.02	13.8	0.0	0.024	13.5	0.0	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
PXA	PF02194.10	gi|284172887|ref|YP_003406268.1|	-	0.022	14.3	0.0	0.032	13.7	0.0	1.2	1	0	0	1	1	1	0	PXA	domain
NAD_binding_8	PF13450.1	gi|284172887|ref|YP_003406268.1|	-	0.031	14.2	0.1	0.076	13.0	0.0	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
HTH_36	PF13730.1	gi|284172887|ref|YP_003406268.1|	-	0.1	12.7	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|284172887|ref|YP_003406268.1|	-	0.13	12.2	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	Transposase
HTH_AsnC-type	PF13404.1	gi|284172887|ref|YP_003406268.1|	-	0.23	11.0	2.2	0.23	11.0	0.4	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
DEP	PF00610.16	gi|284172889|ref|YP_003406270.1|	-	0.11	12.2	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	found	in	Dishevelled,	Egl-10,	and	Pleckstrin	(DEP)
PadR	PF03551.9	gi|284172890|ref|YP_003406271.1|	-	1e-12	47.6	0.2	1.2e-12	47.3	0.2	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|284172890|ref|YP_003406271.1|	-	0.0012	18.6	0.1	0.0015	18.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|284172890|ref|YP_003406271.1|	-	0.027	14.4	0.0	0.036	14.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|284172890|ref|YP_003406271.1|	-	0.11	12.8	0.0	0.13	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.1	gi|284172890|ref|YP_003406271.1|	-	0.14	11.7	0.1	0.21	11.1	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DAO	PF01266.19	gi|284172893|ref|YP_003406274.1|	-	4.1e-78	262.8	0.0	4.6e-78	262.6	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|284172893|ref|YP_003406274.1|	-	9.2e-09	35.6	0.0	0.00042	20.4	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|284172893|ref|YP_003406274.1|	-	8.8e-08	31.1	0.6	7.6e-06	24.8	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Pyr_redox	PF00070.22	gi|284172893|ref|YP_003406274.1|	-	8.7e-07	29.2	0.2	0.046	14.1	0.0	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|284172893|ref|YP_003406274.1|	-	1.2e-06	28.5	0.0	0.0013	18.6	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|284172893|ref|YP_003406274.1|	-	1.4e-05	23.8	0.2	0.0043	15.5	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
NAD_binding_9	PF13454.1	gi|284172893|ref|YP_003406274.1|	-	2.7e-05	24.0	0.2	0.0013	18.4	0.0	2.3	2	0	0	2	2	2	1	FAD-NAD(P)-binding
NAD_binding_8	PF13450.1	gi|284172893|ref|YP_003406274.1|	-	2.7e-05	24.1	0.0	7.5e-05	22.6	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GMC_oxred_N	PF00732.14	gi|284172893|ref|YP_003406274.1|	-	0.00018	20.7	0.0	0.22	10.6	0.0	2.2	2	0	0	2	2	2	2	GMC	oxidoreductase
Thi4	PF01946.12	gi|284172893|ref|YP_003406274.1|	-	0.00023	20.3	0.3	0.00046	19.3	0.1	1.5	2	0	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.19	gi|284172893|ref|YP_003406274.1|	-	0.0015	17.4	0.1	0.0032	16.3	0.1	1.5	1	1	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|284172893|ref|YP_003406274.1|	-	0.0072	15.2	0.2	0.12	11.2	0.0	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Amino_oxidase	PF01593.19	gi|284172893|ref|YP_003406274.1|	-	0.017	14.2	0.4	0.068	12.2	0.3	1.8	1	1	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.17	gi|284172893|ref|YP_003406274.1|	-	0.023	13.5	0.6	1.9	7.2	0.1	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Mqo	PF06039.10	gi|284172893|ref|YP_003406274.1|	-	0.055	11.6	0.1	0.08	11.1	0.0	1.1	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
ApbA	PF02558.11	gi|284172893|ref|YP_003406274.1|	-	0.059	12.8	0.0	0.095	12.1	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.14	gi|284172893|ref|YP_003406274.1|	-	0.06	12.3	0.3	0.29	10.1	0.0	2.1	2	0	0	2	2	2	0	FAD	binding	domain
Saccharop_dh	PF03435.13	gi|284172893|ref|YP_003406274.1|	-	0.08	11.9	0.7	0.66	8.8	0.1	2.1	2	0	0	2	2	2	0	Saccharopine	dehydrogenase
SSF	PF00474.12	gi|284172895|ref|YP_003406276.1|	-	3.1e-68	230.2	32.2	3.9e-68	229.9	22.3	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
HTH_10	PF04967.7	gi|284172899|ref|YP_003406280.1|	-	3e-15	55.5	0.0	4.6e-15	54.9	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|284172899|ref|YP_003406280.1|	-	0.00039	19.6	0.2	0.001	18.3	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_29	PF13551.1	gi|284172899|ref|YP_003406280.1|	-	0.031	14.4	0.0	0.056	13.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
MarR_2	PF12802.2	gi|284172899|ref|YP_003406280.1|	-	0.037	13.7	0.2	0.091	12.4	0.1	1.7	1	1	0	1	1	1	0	MarR	family
HTH_11	PF08279.7	gi|284172899|ref|YP_003406280.1|	-	0.1	12.2	0.0	0.27	10.8	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
SseB	PF07179.7	gi|284172899|ref|YP_003406280.1|	-	0.14	11.9	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	SseB	protein	N-terminal	domain
HTH_24	PF13412.1	gi|284172901|ref|YP_003406282.1|	-	8.1e-05	21.9	0.1	0.00025	20.3	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|284172901|ref|YP_003406282.1|	-	0.00014	21.4	0.1	0.00014	21.4	0.1	2.0	2	0	0	2	2	2	1	HTH	domain
GntR	PF00392.16	gi|284172901|ref|YP_003406282.1|	-	0.001	18.4	0.5	0.0052	16.1	0.1	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
MerR	PF00376.18	gi|284172901|ref|YP_003406282.1|	-	0.0031	17.0	0.2	0.0095	15.4	0.1	1.9	1	0	0	1	1	1	1	MerR	family	regulatory	protein
HTH_23	PF13384.1	gi|284172901|ref|YP_003406282.1|	-	0.0042	16.6	0.8	0.024	14.2	0.1	2.5	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_3	PF01381.17	gi|284172901|ref|YP_003406282.1|	-	0.0046	16.7	0.2	0.03	14.1	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix
MerR_1	PF13411.1	gi|284172901|ref|YP_003406282.1|	-	0.011	15.5	0.0	0.023	14.4	0.0	1.6	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
HTH_36	PF13730.1	gi|284172901|ref|YP_003406282.1|	-	0.011	15.8	0.0	0.025	14.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|284172901|ref|YP_003406282.1|	-	0.014	15.0	5.1	1.1	8.9	0.2	3.2	2	1	0	2	2	2	0	MarR	family
HTH_31	PF13560.1	gi|284172901|ref|YP_003406282.1|	-	0.02	15.0	0.5	0.02	15.0	0.3	3.5	2	1	1	3	3	3	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|284172901|ref|YP_003406282.1|	-	0.045	13.5	2.6	3.8	7.4	0.1	3.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|284172901|ref|YP_003406282.1|	-	0.058	12.8	0.1	1.2	8.6	0.0	2.8	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF1108	PF06531.6	gi|284172903|ref|YP_003406284.1|	-	0.13	12.4	0.2	0.18	12.0	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1108)
HTH_24	PF13412.1	gi|284172904|ref|YP_003406285.1|	-	2.7e-05	23.4	0.0	3.2e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RepL	PF05732.6	gi|284172904|ref|YP_003406285.1|	-	0.0046	16.1	0.0	0.0047	16.1	0.0	1.1	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_AsnC-type	PF13404.1	gi|284172904|ref|YP_003406285.1|	-	0.027	13.9	0.1	0.041	13.4	0.0	1.2	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|284172904|ref|YP_003406285.1|	-	0.045	13.4	0.0	0.048	13.3	0.0	1.1	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.15	gi|284172904|ref|YP_003406285.1|	-	0.08	13.0	0.0	0.1	12.7	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
TrmB	PF01978.14	gi|284172904|ref|YP_003406285.1|	-	0.14	11.8	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
E1-E2_ATPase	PF00122.15	gi|284172908|ref|YP_003406289.1|	-	0.0023	16.9	1.9	0.0023	16.9	1.3	1.7	2	0	0	2	2	2	1	E1-E2	ATPase
PAP2	PF01569.16	gi|284172909|ref|YP_003406290.1|	-	7.4e-18	64.4	4.7	7.4e-18	64.4	3.3	2.0	2	1	0	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.1	gi|284172909|ref|YP_003406290.1|	-	1e-05	25.1	0.7	1.8e-05	24.3	0.5	1.5	1	0	0	1	1	1	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|284172909|ref|YP_003406290.1|	-	0.026	14.7	1.2	0.072	13.3	0.8	1.8	1	0	0	1	1	1	0	PAP2	superfamily	C-terminal
DUF3040	PF11239.3	gi|284172909|ref|YP_003406290.1|	-	0.1	12.6	0.3	0.1	12.6	0.2	5.0	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF3040)
COX15-CtaA	PF02628.10	gi|284172909|ref|YP_003406290.1|	-	3.6	6.3	20.9	0.54	9.0	2.4	3.3	2	1	1	3	3	3	0	Cytochrome	oxidase	assembly	protein
Phage_integrase	PF00589.17	gi|284172911|ref|YP_003406292.1|	-	1.7e-16	60.4	0.0	1.3e-15	57.5	0.0	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|284172911|ref|YP_003406292.1|	-	4.5e-06	26.9	0.0	2.2e-05	24.6	0.0	2.2	2	1	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|284172911|ref|YP_003406292.1|	-	0.00017	21.6	0.0	0.00092	19.3	0.0	2.3	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DDE_Tnp_IS240	PF13610.1	gi|284172913|ref|YP_003406294.1|	-	4.1e-30	104.5	0.0	6.5e-30	103.9	0.0	1.3	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.1	gi|284172913|ref|YP_003406294.1|	-	4.7e-12	45.2	0.6	8.7e-12	44.3	0.4	1.4	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|284172913|ref|YP_003406294.1|	-	0.00023	21.2	0.3	0.00065	19.7	0.2	1.9	1	1	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.9	gi|284172913|ref|YP_003406294.1|	-	0.0016	17.6	0.2	0.0038	16.5	0.1	1.4	1	1	0	1	1	1	1	Transposase	IS66	family
DUF2384	PF09722.5	gi|284172913|ref|YP_003406294.1|	-	0.0045	16.8	0.7	0.52	10.2	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2384)
rve_2	PF13333.1	gi|284172913|ref|YP_003406294.1|	-	0.006	16.6	0.0	0.011	15.8	0.0	1.4	1	0	0	1	1	1	1	Integrase	core	domain
HTH_24	PF13412.1	gi|284172916|ref|YP_003406297.1|	-	1.9e-05	23.9	0.0	3.3e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|284172916|ref|YP_003406297.1|	-	0.00029	20.2	0.0	0.00042	19.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
TFIIE_alpha	PF02002.12	gi|284172916|ref|YP_003406297.1|	-	0.0014	18.1	0.0	0.0016	17.8	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
MarR_2	PF12802.2	gi|284172916|ref|YP_003406297.1|	-	0.0052	16.4	0.1	0.0067	16.0	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|284172916|ref|YP_003406297.1|	-	0.017	14.5	0.1	0.04	13.3	0.0	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
TrmB	PF01978.14	gi|284172916|ref|YP_003406297.1|	-	0.019	14.6	0.1	0.023	14.3	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|284172916|ref|YP_003406297.1|	-	0.027	14.8	0.1	0.036	14.3	0.1	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_12	PF08461.5	gi|284172916|ref|YP_003406297.1|	-	0.048	13.3	0.0	0.14	11.9	0.0	1.8	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
PI3K_C2	PF00792.19	gi|284172916|ref|YP_003406297.1|	-	0.058	13.1	0.0	0.063	13.0	0.0	1.2	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	C2
HTH_Crp_2	PF13545.1	gi|284172916|ref|YP_003406297.1|	-	0.081	12.7	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|284172916|ref|YP_003406297.1|	-	0.089	12.9	0.0	0.12	12.5	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
PEPCK_ATP	PF01293.15	gi|284172917|ref|YP_003406298.1|	-	2.8e-62	210.7	0.0	5.7e-62	209.7	0.0	1.5	1	1	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
SOR_SNZ	PF01680.12	gi|284172918|ref|YP_003406299.1|	-	3.9e-103	343.4	7.6	5.3e-103	343.0	5.2	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|284172918|ref|YP_003406299.1|	-	1e-09	37.8	2.7	2.9e-05	23.2	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|284172918|ref|YP_003406299.1|	-	0.00087	18.2	0.8	0.39	9.4	0.0	2.3	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
OMPdecase	PF00215.19	gi|284172918|ref|YP_003406299.1|	-	0.027	13.8	0.2	6.2	6.1	0.2	2.4	1	1	1	2	2	2	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IGPS	PF00218.16	gi|284172918|ref|YP_003406299.1|	-	0.072	12.1	0.1	0.26	10.2	0.0	1.9	2	0	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
PALP	PF00291.20	gi|284172919|ref|YP_003406300.1|	-	6e-56	189.9	0.7	6.9e-56	189.7	0.5	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Ala_racemase_N	PF01168.15	gi|284172920|ref|YP_003406301.1|	-	1.8e-23	83.2	0.1	2.6e-23	82.7	0.0	1.2	1	0	0	1	1	1	1	Alanine	racemase,	N-terminal	domain
D-ser_dehydrat	PF14031.1	gi|284172920|ref|YP_003406301.1|	-	1.4e-20	73.2	0.0	3.3e-20	72.0	0.0	1.7	1	0	0	1	1	1	1	Putative	serine	dehydratase	domain
IclR	PF01614.13	gi|284172921|ref|YP_003406302.1|	-	9.9e-22	77.0	0.0	1.1e-21	76.9	0.0	1.0	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
IclR	PF01614.13	gi|284172922|ref|YP_003406303.1|	-	4.4e-26	91.0	0.0	1.1e-25	89.7	0.0	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|284172922|ref|YP_003406303.1|	-	6.3e-10	38.4	0.0	1.3e-09	37.4	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|284172922|ref|YP_003406303.1|	-	7.3e-06	25.5	0.0	2.6e-05	23.7	0.0	1.9	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|284172922|ref|YP_003406303.1|	-	8.1e-06	25.1	0.0	2.4e-05	23.6	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|284172922|ref|YP_003406303.1|	-	2.9e-05	23.7	0.0	6.2e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|284172922|ref|YP_003406303.1|	-	0.00071	19.1	0.0	0.0037	16.8	0.0	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|284172922|ref|YP_003406303.1|	-	0.00092	18.9	0.0	0.0031	17.3	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|284172922|ref|YP_003406303.1|	-	0.0023	17.7	0.0	0.0057	16.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|284172922|ref|YP_003406303.1|	-	0.0032	17.7	0.2	0.012	15.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|284172922|ref|YP_003406303.1|	-	0.025	14.1	0.0	0.2	11.2	0.0	2.3	3	0	0	3	3	3	0	HTH	DNA	binding	domain
B-block_TFIIIC	PF04182.7	gi|284172922|ref|YP_003406303.1|	-	0.052	13.4	0.0	0.099	12.5	0.0	1.5	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
FaeA	PF04703.7	gi|284172922|ref|YP_003406303.1|	-	0.054	13.6	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
HTH_11	PF08279.7	gi|284172922|ref|YP_003406303.1|	-	0.061	12.9	0.0	0.24	11.0	0.0	2.1	1	1	0	1	1	1	0	HTH	domain
Penicillinase_R	PF03965.11	gi|284172922|ref|YP_003406303.1|	-	0.11	12.6	0.0	0.31	11.1	0.0	1.7	1	0	0	1	1	1	0	Penicillinase	repressor
tRNA-synt_2c	PF01411.14	gi|284172923|ref|YP_003406304.1|	-	1.6e-13	49.8	0.1	2.5e-13	49.1	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|284172923|ref|YP_003406304.1|	-	8.6e-10	38.3	0.2	1.7e-09	37.4	0.1	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
PRP4	PF08799.6	gi|284172923|ref|YP_003406304.1|	-	0.042	13.1	0.4	0.1	11.9	0.2	1.7	1	0	0	1	1	1	0	pre-mRNA	processing	factor	4	(PRP4)	like
DUF3863	PF12979.2	gi|284172923|ref|YP_003406304.1|	-	0.055	12.0	0.0	0.07	11.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3863)
SDF	PF00375.13	gi|284172924|ref|YP_003406305.1|	-	5.3e-117	390.8	29.7	6e-117	390.6	20.6	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
EMP70	PF02990.11	gi|284172924|ref|YP_003406305.1|	-	0.13	10.7	6.0	0.68	8.3	0.5	2.3	2	0	0	2	2	2	0	Endomembrane	protein	70
DUF641	PF04859.7	gi|284172926|ref|YP_003406307.1|	-	7.3e-05	22.5	2.6	0.00018	21.2	1.8	1.7	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF641)
Tup_N	PF08581.5	gi|284172926|ref|YP_003406307.1|	-	0.0035	17.5	2.6	0.0094	16.1	1.8	1.7	1	0	0	1	1	1	1	Tup	N-terminal
DUF812	PF05667.6	gi|284172926|ref|YP_003406307.1|	-	0.012	14.1	4.7	0.018	13.5	3.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Mnd1	PF03962.10	gi|284172926|ref|YP_003406307.1|	-	0.018	14.7	7.5	0.036	13.7	5.2	1.5	1	0	0	1	1	1	0	Mnd1	family
DUF1664	PF07889.7	gi|284172926|ref|YP_003406307.1|	-	0.021	14.6	2.6	0.048	13.4	1.8	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FlgN	PF05130.7	gi|284172926|ref|YP_003406307.1|	-	0.025	14.8	5.0	0.025	14.8	3.4	1.9	2	0	0	2	2	1	0	FlgN	protein
TBPIP	PF07106.8	gi|284172926|ref|YP_003406307.1|	-	0.039	13.4	3.4	0.084	12.4	2.4	1.6	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
AKNA	PF12443.3	gi|284172926|ref|YP_003406307.1|	-	0.062	13.3	7.7	0.6	10.1	1.0	2.8	2	1	1	3	3	2	0	AT-hook-containing	transcription	factor
DUF3450	PF11932.3	gi|284172926|ref|YP_003406307.1|	-	0.084	12.1	8.6	0.045	13.0	4.3	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DUF2570	PF10828.3	gi|284172926|ref|YP_003406307.1|	-	0.11	12.0	4.0	0.2	11.2	2.8	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2570)
Med9	PF07544.8	gi|284172926|ref|YP_003406307.1|	-	0.12	12.1	6.6	0.36	10.5	4.6	1.8	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Atg14	PF10186.4	gi|284172926|ref|YP_003406307.1|	-	0.12	11.2	4.6	0.19	10.6	3.2	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4337	PF14235.1	gi|284172926|ref|YP_003406307.1|	-	0.16	11.7	5.0	0.29	10.9	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
TMF_DNA_bd	PF12329.3	gi|284172926|ref|YP_003406307.1|	-	0.19	11.5	9.6	0.42	10.4	6.7	1.6	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
YPEB	PF14620.1	gi|284172926|ref|YP_003406307.1|	-	0.23	10.4	4.3	0.15	11.0	1.9	1.5	2	0	0	2	2	2	0	YpeB	sporulation
SlyX	PF04102.7	gi|284172926|ref|YP_003406307.1|	-	0.43	10.9	7.8	1.4	9.3	5.3	2.1	1	1	0	1	1	1	0	SlyX
IncA	PF04156.9	gi|284172926|ref|YP_003406307.1|	-	0.48	10.0	7.3	0.86	9.1	5.0	1.4	1	0	0	1	1	1	0	IncA	protein
DUF4407	PF14362.1	gi|284172926|ref|YP_003406307.1|	-	0.92	8.4	5.0	1.6	7.5	3.4	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Synaptobrevin	PF00957.16	gi|284172926|ref|YP_003406307.1|	-	0.94	9.1	3.9	1.9	8.1	2.7	1.4	1	0	0	1	1	1	0	Synaptobrevin
DUF4404	PF14357.1	gi|284172926|ref|YP_003406307.1|	-	1	9.8	7.2	2.6	8.5	5.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
CorA	PF01544.13	gi|284172926|ref|YP_003406307.1|	-	1.1	8.2	4.7	1.8	7.4	3.3	1.3	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
XhlA	PF10779.4	gi|284172926|ref|YP_003406307.1|	-	1.1	9.1	6.7	3.7	7.5	4.7	1.8	1	0	0	1	1	1	0	Haemolysin	XhlA
DUF972	PF06156.8	gi|284172926|ref|YP_003406307.1|	-	1.2	9.5	4.0	2.9	8.2	2.5	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
PspB	PF06667.7	gi|284172926|ref|YP_003406307.1|	-	2	8.4	8.2	0.51	10.3	0.8	3.0	2	1	1	3	3	3	0	Phage	shock	protein	B
APG6	PF04111.7	gi|284172926|ref|YP_003406307.1|	-	3.6	6.5	6.6	5.3	5.9	4.6	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
AcylCoA_dehyd_C	PF12186.3	gi|284172926|ref|YP_003406307.1|	-	4.7	7.1	7.3	20	5.0	0.4	2.5	1	1	1	2	2	2	0	Acyl-CoA	dehydrogenase	C	terminal
DUF4140	PF13600.1	gi|284172926|ref|YP_003406307.1|	-	5.7	7.4	9.1	4.9	7.6	2.7	2.4	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Phage_GP20	PF06810.6	gi|284172928|ref|YP_003406309.1|	-	0.00073	19.0	21.1	0.004	16.6	4.3	2.6	2	1	1	3	3	2	2	Phage	minor	structural	protein	GP20
GAS	PF13851.1	gi|284172928|ref|YP_003406309.1|	-	0.0014	17.8	13.2	0.0014	17.8	9.2	2.2	1	1	1	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
SMC_N	PF02463.14	gi|284172928|ref|YP_003406309.1|	-	0.0015	17.7	0.3	0.0022	17.2	0.2	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Seryl_tRNA_N	PF02403.17	gi|284172928|ref|YP_003406309.1|	-	0.0018	18.2	24.6	0.017	15.0	5.5	2.7	1	1	1	2	2	2	2	Seryl-tRNA	synthetase	N-terminal	domain
Prominin	PF05478.6	gi|284172928|ref|YP_003406309.1|	-	0.0048	14.5	9.5	0.0066	14.0	6.6	1.1	1	0	0	1	1	1	1	Prominin
Prefoldin	PF02996.12	gi|284172928|ref|YP_003406309.1|	-	0.007	16.0	20.4	0.46	10.1	0.7	4.3	2	2	2	4	4	4	2	Prefoldin	subunit
APG6	PF04111.7	gi|284172928|ref|YP_003406309.1|	-	0.0072	15.4	21.9	0.0072	15.4	15.2	2.2	1	1	1	2	2	2	1	Autophagy	protein	Apg6
Spc7	PF08317.6	gi|284172928|ref|YP_003406309.1|	-	0.0075	14.9	9.8	0.0075	14.9	6.8	2.3	1	1	1	2	2	2	1	Spc7	kinetochore	protein
DivIC	PF04977.10	gi|284172928|ref|YP_003406309.1|	-	0.0077	15.7	30.0	0.061	12.8	0.7	4.4	1	1	4	5	5	5	3	Septum	formation	initiator
HSBP1	PF06825.7	gi|284172928|ref|YP_003406309.1|	-	0.0084	15.6	7.1	0.59	9.7	1.8	3.7	2	2	1	3	3	3	1	Heat	shock	factor	binding	protein	1
DUF4201	PF13870.1	gi|284172928|ref|YP_003406309.1|	-	0.011	15.1	19.3	0.014	14.8	7.0	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4201)
COG2	PF06148.6	gi|284172928|ref|YP_003406309.1|	-	0.013	15.3	11.3	0.08	12.8	1.6	2.6	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AAA_13	PF13166.1	gi|284172928|ref|YP_003406309.1|	-	0.029	12.8	21.1	0.13	10.7	14.6	2.0	1	1	0	1	1	1	0	AAA	domain
Snapin_Pallidin	PF14712.1	gi|284172928|ref|YP_003406309.1|	-	0.029	14.6	3.0	0.029	14.6	2.1	3.2	1	1	3	4	4	4	0	Snapin/Pallidin
NPV_P10	PF05531.7	gi|284172928|ref|YP_003406309.1|	-	0.037	14.2	13.2	6.9e+02	0.5	8.7	4.0	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Fib_alpha	PF08702.5	gi|284172928|ref|YP_003406309.1|	-	0.041	14.0	15.9	0.16	12.0	3.1	2.4	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
IFT57	PF10498.4	gi|284172928|ref|YP_003406309.1|	-	0.049	12.3	18.3	0.081	11.6	12.7	1.4	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
bZIP_2	PF07716.10	gi|284172928|ref|YP_003406309.1|	-	0.05	13.4	0.1	0.05	13.4	0.1	4.5	4	0	0	4	4	3	0	Basic	region	leucine	zipper
Mod_r	PF07200.8	gi|284172928|ref|YP_003406309.1|	-	0.053	13.4	17.6	0.32	10.9	1.6	2.7	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF4407	PF14362.1	gi|284172928|ref|YP_003406309.1|	-	0.073	12.0	12.5	0.12	11.3	8.6	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Baculo_PEP_C	PF04513.7	gi|284172928|ref|YP_003406309.1|	-	0.094	12.5	7.5	2.4	7.9	1.0	2.8	2	1	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Sec8_exocyst	PF04048.9	gi|284172928|ref|YP_003406309.1|	-	0.12	12.0	6.9	0.044	13.4	0.6	2.5	1	1	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
BLOC1_2	PF10046.4	gi|284172928|ref|YP_003406309.1|	-	0.14	12.3	16.8	2.3	8.3	3.9	2.9	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF3450	PF11932.3	gi|284172928|ref|YP_003406309.1|	-	0.14	11.3	14.6	2.3	7.3	10.4	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
TPR_MLP1_2	PF07926.7	gi|284172928|ref|YP_003406309.1|	-	0.14	11.8	22.4	0.23	11.1	5.5	2.6	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF489	PF04356.7	gi|284172928|ref|YP_003406309.1|	-	0.16	11.5	2.6	0.44	10.1	1.0	2.4	2	1	0	2	2	1	0	Protein	of	unknown	function	(DUF489)
PilJ	PF13675.1	gi|284172928|ref|YP_003406309.1|	-	0.18	12.1	12.3	1	9.6	1.0	3.2	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
AAA_27	PF13514.1	gi|284172928|ref|YP_003406309.1|	-	0.18	9.4	28.1	0.08	10.6	14.7	2.2	1	1	1	3	3	3	0	AAA	domain
Tweety	PF04906.8	gi|284172928|ref|YP_003406309.1|	-	0.28	9.5	2.3	5.7	5.2	0.4	2.2	2	0	0	2	2	2	0	Tweety
TBPIP	PF07106.8	gi|284172928|ref|YP_003406309.1|	-	0.37	10.3	24.1	0.29	10.6	7.6	2.5	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
bZIP_1	PF00170.16	gi|284172928|ref|YP_003406309.1|	-	0.42	10.5	0.1	0.42	10.5	0.1	4.5	2	2	2	4	4	4	0	bZIP	transcription	factor
Reo_sigmaC	PF04582.7	gi|284172928|ref|YP_003406309.1|	-	0.48	9.5	4.1	0.7	9.0	1.8	1.9	2	1	0	2	2	1	0	Reovirus	sigma	C	capsid	protein
Mnd1	PF03962.10	gi|284172928|ref|YP_003406309.1|	-	0.52	9.9	25.3	2.7	7.6	5.8	2.6	1	1	1	2	2	2	0	Mnd1	family
Laminin_II	PF06009.7	gi|284172928|ref|YP_003406309.1|	-	0.68	9.6	13.8	14	5.3	5.8	2.7	1	1	1	2	2	2	0	Laminin	Domain	II
ATG16	PF08614.6	gi|284172928|ref|YP_003406309.1|	-	0.72	9.6	31.4	3	7.6	8.2	2.6	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
Fzo_mitofusin	PF04799.8	gi|284172928|ref|YP_003406309.1|	-	0.8	9.0	11.8	1.6	8.0	1.3	2.6	1	1	2	3	3	3	0	fzo-like	conserved	region
IncA	PF04156.9	gi|284172928|ref|YP_003406309.1|	-	0.95	9.0	39.4	6.9	6.2	18.4	2.8	1	1	1	2	2	2	0	IncA	protein
DUF1664	PF07889.7	gi|284172928|ref|YP_003406309.1|	-	0.97	9.2	18.4	3.1	7.5	2.7	3.5	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF2959	PF11172.3	gi|284172928|ref|YP_003406309.1|	-	1.2	8.8	17.5	1.8	8.3	0.7	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2959)
Atg14	PF10186.4	gi|284172928|ref|YP_003406309.1|	-	1.6	7.6	27.2	0.63	8.9	6.7	2.6	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF2203	PF09969.4	gi|284172928|ref|YP_003406309.1|	-	1.7	8.8	14.9	0.69	10.1	1.7	2.9	2	1	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
CENP-F_leu_zip	PF10473.4	gi|284172928|ref|YP_003406309.1|	-	2.2	8.1	34.6	4.6	7.0	7.6	3.1	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Cluap1	PF10234.4	gi|284172928|ref|YP_003406309.1|	-	2.3	7.3	20.8	0.53	9.4	7.8	2.3	1	1	1	2	2	2	0	Clusterin-associated	protein-1
TMF_TATA_bd	PF12325.3	gi|284172928|ref|YP_003406309.1|	-	3.8	7.2	33.4	2	8.1	8.9	3.0	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
DUF4140	PF13600.1	gi|284172928|ref|YP_003406309.1|	-	4	7.9	28.1	9.1	6.7	2.3	4.5	1	1	2	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
Occludin_ELL	PF07303.8	gi|284172928|ref|YP_003406309.1|	-	5.9	7.6	16.4	13	6.6	4.3	3.2	1	1	3	4	4	4	0	Occludin	homology	domain
FlxA	PF14282.1	gi|284172928|ref|YP_003406309.1|	-	6.3	6.7	14.7	26	4.8	5.6	2.9	1	1	2	3	3	3	0	FlxA-like	protein
ACCA	PF03255.9	gi|284172928|ref|YP_003406309.1|	-	7.2	6.1	15.3	2.1	7.9	0.8	3.2	1	1	2	3	3	3	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
FemAB	PF02388.11	gi|284172928|ref|YP_003406309.1|	-	8.9	4.8	16.6	1.8	7.1	1.6	2.5	1	1	2	3	3	3	0	FemAB	family
DUF2968	PF11180.3	gi|284172928|ref|YP_003406309.1|	-	9.3	5.5	19.2	8.4	5.7	3.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2968)
Rho_N	PF07498.7	gi|284172930|ref|YP_003406311.1|	-	0.077	12.7	0.2	0.37	10.5	0.0	1.9	2	0	0	2	2	2	0	Rho	termination	factor,	N-terminal	domain
Big_2	PF02368.13	gi|284172933|ref|YP_003406314.1|	-	0.049	13.5	0.0	0.086	12.7	0.0	1.5	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	2)
TrmB	PF01978.14	gi|284172934|ref|YP_003406315.1|	-	7.5e-16	57.6	0.0	2.3e-15	56.0	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.3	gi|284172934|ref|YP_003406315.1|	-	4.2e-08	32.4	0.0	6.1e-08	31.9	0.0	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|284172934|ref|YP_003406315.1|	-	0.0098	16.1	0.2	0.11	12.7	0.0	2.6	2	1	1	3	3	3	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|284172934|ref|YP_003406315.1|	-	0.024	14.3	0.0	0.047	13.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
ESCRT-II	PF05871.7	gi|284172934|ref|YP_003406315.1|	-	0.038	13.9	0.0	0.076	12.9	0.0	1.5	1	0	0	1	1	1	0	ESCRT-II	complex	subunit
RTX_C	PF08339.5	gi|284172934|ref|YP_003406315.1|	-	0.055	13.1	0.0	0.086	12.5	0.0	1.3	1	0	0	1	1	1	0	RTX	C-terminal	domain
Zot	PF05707.7	gi|284172934|ref|YP_003406315.1|	-	0.085	12.3	0.4	0.38	10.2	0.0	2.0	1	1	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
N_methyl_3	PF13633.1	gi|284172935|ref|YP_003406316.1|	-	0.14	12.0	0.5	0.31	11.0	0.1	1.8	2	0	0	2	2	2	0	Prokaryotic	N-terminal	methylation	site
DUF4404	PF14357.1	gi|284172936|ref|YP_003406317.1|	-	0.1	13.0	0.0	0.15	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
DUF2270	PF10028.4	gi|284172937|ref|YP_003406318.1|	-	5.3e-65	218.3	8.3	6.5e-65	218.0	5.8	1.1	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
DUF485	PF04341.7	gi|284172937|ref|YP_003406318.1|	-	0.011	15.4	1.8	0.056	13.1	0.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF485
DUF4131	PF13567.1	gi|284172937|ref|YP_003406318.1|	-	0.014	14.8	1.0	3.1	7.1	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF4401	PF14351.1	gi|284172937|ref|YP_003406318.1|	-	0.025	13.5	6.4	0.075	12.0	4.5	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4401)
O-antigen_lig	PF13425.1	gi|284172937|ref|YP_003406318.1|	-	0.034	14.1	0.1	6.6	6.7	0.0	2.2	2	0	0	2	2	2	0	O-antigen	ligase	like	membrane	protein
DUF2628	PF10947.3	gi|284172937|ref|YP_003406318.1|	-	0.22	11.3	3.3	16	5.3	1.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
DctQ	PF04290.7	gi|284172937|ref|YP_003406318.1|	-	1.1	9.0	12.0	3.5	7.3	3.0	2.3	2	1	0	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DUF418	PF04235.7	gi|284172937|ref|YP_003406318.1|	-	1.9	8.1	6.8	0.16	11.6	0.7	1.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF418)
CbiA	PF01656.18	gi|284172939|ref|YP_003406320.1|	-	2.5e-23	82.5	0.0	3e-23	82.2	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
YhjQ	PF06564.7	gi|284172939|ref|YP_003406320.1|	-	5.5e-09	35.7	0.0	7.7e-09	35.2	0.0	1.2	1	0	0	1	1	1	1	YhjQ	protein
AAA_31	PF13614.1	gi|284172939|ref|YP_003406320.1|	-	5.6e-09	36.1	0.0	5.4e-08	32.9	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|284172939|ref|YP_003406320.1|	-	2.9e-07	29.8	0.2	0.00043	19.4	0.1	2.3	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|284172939|ref|YP_003406320.1|	-	3.8e-07	29.4	0.1	9.2e-07	28.1	0.0	1.7	2	1	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|284172939|ref|YP_003406320.1|	-	1.9e-05	24.0	0.0	0.0021	17.3	0.0	2.4	3	0	0	3	3	3	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.6	gi|284172939|ref|YP_003406320.1|	-	0.0039	16.2	0.0	0.047	12.7	0.0	2.2	2	0	0	2	2	2	1	VirC1	protein
AAA_17	PF13207.1	gi|284172939|ref|YP_003406320.1|	-	0.012	16.4	0.0	0.021	15.6	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Methyltransf_26	PF13659.1	gi|284172939|ref|YP_003406320.1|	-	0.024	14.6	0.0	0.065	13.2	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
ArgK	PF03308.11	gi|284172939|ref|YP_003406320.1|	-	0.037	12.8	0.0	0.052	12.3	0.0	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_25	PF13481.1	gi|284172939|ref|YP_003406320.1|	-	0.064	12.6	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|284172939|ref|YP_003406320.1|	-	0.074	13.3	0.0	0.19	12.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.15	gi|284172939|ref|YP_003406320.1|	-	0.11	12.0	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DUF1814	PF08843.6	gi|284172940|ref|YP_003406321.1|	-	7.3e-36	124.1	0.3	8.5e-36	123.8	0.2	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
DUF4095	PF13338.1	gi|284172941|ref|YP_003406322.1|	-	2e-25	89.3	0.4	3.2e-25	88.6	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4095)
MarR_2	PF12802.2	gi|284172941|ref|YP_003406322.1|	-	0.0001	21.8	0.4	0.00034	20.2	0.1	1.9	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|284172941|ref|YP_003406322.1|	-	0.0015	18.8	0.2	0.013	15.7	0.1	2.3	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|284172941|ref|YP_003406322.1|	-	0.021	14.3	0.4	0.24	10.9	0.1	2.7	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|284172941|ref|YP_003406322.1|	-	0.043	13.9	0.0	0.12	12.4	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_DeoR	PF08220.7	gi|284172941|ref|YP_003406322.1|	-	0.13	11.8	0.2	0.84	9.2	0.0	2.2	1	1	1	2	2	2	0	DeoR-like	helix-turn-helix	domain
Cdc6_C	PF09079.6	gi|284172942|ref|YP_003406323.1|	-	1.6e-15	56.5	0.1	3.4e-15	55.5	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|284172942|ref|YP_003406323.1|	-	9.9e-14	51.5	0.0	2.8e-13	50.1	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|284172942|ref|YP_003406323.1|	-	4.8e-10	39.7	0.8	1.4e-09	38.1	0.1	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|284172942|ref|YP_003406323.1|	-	4.6e-07	29.7	0.0	8.2e-07	28.9	0.0	1.5	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_5	PF07728.9	gi|284172942|ref|YP_003406323.1|	-	3.1e-05	23.7	0.0	0.00011	21.9	0.0	2.0	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|284172942|ref|YP_003406323.1|	-	0.00027	20.4	0.0	0.00052	19.5	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|284172942|ref|YP_003406323.1|	-	0.00068	18.6	0.0	0.0011	17.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
RNA_helicase	PF00910.17	gi|284172942|ref|YP_003406323.1|	-	0.0043	17.2	0.1	0.036	14.2	0.0	2.5	1	1	0	1	1	1	1	RNA	helicase
AAA_14	PF13173.1	gi|284172942|ref|YP_003406323.1|	-	0.008	16.0	0.0	0.03	14.2	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|284172942|ref|YP_003406323.1|	-	0.017	14.4	0.1	1.1	8.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Torsin	PF06309.6	gi|284172942|ref|YP_003406323.1|	-	0.031	14.1	0.0	0.34	10.8	0.0	2.2	2	0	0	2	2	2	0	Torsin
AAA	PF00004.24	gi|284172942|ref|YP_003406323.1|	-	0.033	14.4	0.9	0.14	12.3	0.1	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ResIII	PF04851.10	gi|284172942|ref|YP_003406323.1|	-	0.036	13.8	0.4	0.35	10.6	0.0	2.8	3	1	0	4	4	3	0	Type	III	restriction	enzyme,	res	subunit
AAA_17	PF13207.1	gi|284172942|ref|YP_003406323.1|	-	0.042	14.6	3.0	0.32	11.8	2.2	2.5	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|284172942|ref|YP_003406323.1|	-	0.042	12.7	0.0	0.059	12.2	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|284172942|ref|YP_003406323.1|	-	0.043	14.1	0.0	0.11	12.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|284172942|ref|YP_003406323.1|	-	0.05	13.3	0.2	0.14	11.8	0.0	1.8	2	0	0	2	2	2	0	Part	of	AAA	domain
Adeno_IVa2	PF02456.10	gi|284172942|ref|YP_003406323.1|	-	0.085	11.4	0.0	0.15	10.7	0.0	1.3	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
Sigma54_activ_2	PF14532.1	gi|284172942|ref|YP_003406323.1|	-	0.094	12.7	0.0	0.3	11.1	0.0	1.8	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Mg_chelatase_2	PF13335.1	gi|284172942|ref|YP_003406323.1|	-	0.2	12.0	3.1	0.73	10.2	0.6	2.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
PadR	PF03551.9	gi|284172944|ref|YP_003406325.1|	-	2.1e-16	59.4	0.4	2.7e-16	59.0	0.3	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|284172944|ref|YP_003406325.1|	-	0.00031	21.0	0.0	0.00045	20.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|284172944|ref|YP_003406325.1|	-	0.011	15.5	0.0	0.016	15.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
MarR_2	PF12802.2	gi|284172944|ref|YP_003406325.1|	-	0.03	13.9	0.4	27	4.5	0.0	3.0	3	0	0	3	3	3	0	MarR	family
DUF1495	PF07381.6	gi|284172944|ref|YP_003406325.1|	-	0.033	13.8	0.0	0.051	13.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_34	PF13601.1	gi|284172944|ref|YP_003406325.1|	-	0.14	12.1	0.0	0.18	11.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|284172946|ref|YP_003406327.1|	-	0.0071	16.0	0.0	0.0099	15.5	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.14	gi|284172946|ref|YP_003406327.1|	-	0.024	14.5	0.0	0.027	14.4	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Octopine_DH	PF02317.12	gi|284172946|ref|YP_003406327.1|	-	0.093	12.3	0.0	0.11	12.2	0.0	1.1	1	0	0	1	1	1	0	NAD/NADP	octopine/nopaline	dehydrogenase,	alpha-helical	domain
HTH_24	PF13412.1	gi|284172948|ref|YP_003406329.1|	-	3.2e-06	26.4	0.0	4.6e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.4	gi|284172948|ref|YP_003406329.1|	-	0.0013	18.5	0.0	0.0036	17.1	0.0	1.6	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_45	PF14947.1	gi|284172948|ref|YP_003406329.1|	-	0.0016	18.1	0.0	0.0022	17.7	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.15	gi|284172948|ref|YP_003406329.1|	-	0.003	17.1	0.0	0.0049	16.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|284172948|ref|YP_003406329.1|	-	0.039	13.6	0.0	0.062	12.9	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Pneumo_ncap	PF03246.8	gi|284172948|ref|YP_003406329.1|	-	0.096	11.1	0.0	0.12	10.9	0.0	1.1	1	0	0	1	1	1	0	Pneumovirus	nucleocapsid	protein
TrmB	PF01978.14	gi|284172948|ref|YP_003406329.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
z-alpha	PF02295.12	gi|284172948|ref|YP_003406329.1|	-	0.14	11.9	0.0	0.24	11.1	0.0	1.3	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
Peptidase_M10	PF00413.19	gi|284172949|ref|YP_003406330.1|	-	0.034	13.8	4.0	0.037	13.7	2.8	1.1	1	0	0	1	1	1	0	Matrixin
CbiK	PF06180.6	gi|284172950|ref|YP_003406331.1|	-	0.097	11.7	0.0	0.17	10.9	0.0	1.3	1	0	0	1	1	1	0	Cobalt	chelatase	(CbiK)
zf-H2C2_5	PF13909.1	gi|284172951|ref|YP_003406332.1|	-	0.027	14.6	0.1	0.035	14.3	0.1	1.2	1	0	0	1	1	1	0	C2H2-type	zinc-finger	domain
zf-C2H2	PF00096.21	gi|284172951|ref|YP_003406332.1|	-	0.049	13.9	0.0	0.064	13.6	0.0	1.2	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|284172951|ref|YP_003406332.1|	-	0.11	12.9	0.1	0.14	12.5	0.1	1.2	1	0	0	1	1	1	0	C2H2-type	zinc	finger
TrmB	PF01978.14	gi|284172953|ref|YP_003406334.1|	-	9.4e-19	66.8	0.0	1.4e-18	66.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|284172953|ref|YP_003406334.1|	-	0.0024	17.4	0.1	0.006	16.2	0.1	1.7	1	1	0	1	1	1	1	MarR	family
Regulator_TrmB	PF11495.3	gi|284172953|ref|YP_003406334.1|	-	0.019	13.9	0.0	0.025	13.5	0.0	1.2	1	0	0	1	1	1	0	Archaeal	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|284172953|ref|YP_003406334.1|	-	0.024	14.2	0.2	0.14	11.7	0.0	2.3	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
Cpn60_TCP1	PF00118.19	gi|284172953|ref|YP_003406334.1|	-	0.035	12.7	0.0	0.041	12.5	0.0	1.2	1	0	0	1	1	1	0	TCP-1/cpn60	chaperonin	family
Fe_dep_repress	PF01325.14	gi|284172953|ref|YP_003406334.1|	-	0.035	14.0	0.0	0.1	12.5	0.0	1.8	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF2250	PF10007.4	gi|284172953|ref|YP_003406334.1|	-	0.042	13.7	0.0	0.14	12.1	0.0	1.9	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
PadR	PF03551.9	gi|284172953|ref|YP_003406334.1|	-	0.045	13.5	0.0	0.18	11.6	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|284172953|ref|YP_003406334.1|	-	0.046	14.0	0.0	0.13	12.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF2418	PF10332.4	gi|284172953|ref|YP_003406334.1|	-	0.06	13.6	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2418)
HTH_20	PF12840.2	gi|284172953|ref|YP_003406334.1|	-	0.098	12.4	0.1	0.26	11.1	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF664	PF04978.7	gi|284172953|ref|YP_003406334.1|	-	0.18	12.0	4.4	0.42	10.8	0.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF664)
NicO	PF03824.11	gi|284172955|ref|YP_003406336.1|	-	7.4e-06	25.4	16.4	3.7e-05	23.2	11.4	2.3	1	1	0	1	1	1	1	High-affinity	nickel-transport	protein
DUF1772	PF08592.6	gi|284172955|ref|YP_003406336.1|	-	7.1	6.3	6.5	6.8	6.4	0.4	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1772)
DUF4199	PF13858.1	gi|284172955|ref|YP_003406336.1|	-	8.1	6.3	9.5	7.3	6.4	1.2	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4199)
NikR_C	PF08753.6	gi|284172956|ref|YP_003406337.1|	-	1.9e-12	46.8	0.3	2.9e-12	46.2	0.2	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|284172956|ref|YP_003406337.1|	-	0.038	13.9	0.1	0.067	13.1	0.0	1.4	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
PIN_4	PF13638.1	gi|284172956|ref|YP_003406337.1|	-	0.084	12.9	0.2	0.14	12.2	0.2	1.3	1	1	0	1	1	1	0	PIN	domain
CbiA	PF01656.18	gi|284172957|ref|YP_003406338.1|	-	1.6e-23	83.1	0.0	2.2e-23	82.6	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|284172957|ref|YP_003406338.1|	-	5.5e-09	36.1	0.0	1.5e-08	34.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|284172957|ref|YP_003406338.1|	-	8.9e-07	28.2	0.0	3.4e-06	26.3	0.0	2.0	2	1	0	2	2	2	1	Anion-transporting	ATPase
AAA_10	PF12846.2	gi|284172957|ref|YP_003406338.1|	-	7.3e-05	22.3	0.0	0.0001	21.8	0.0	1.6	1	1	0	1	1	1	1	AAA-like	domain
MipZ	PF09140.6	gi|284172957|ref|YP_003406338.1|	-	0.00039	19.5	1.8	0.016	14.3	0.0	2.5	3	0	0	3	3	3	1	ATPase	MipZ
YhjQ	PF06564.7	gi|284172957|ref|YP_003406338.1|	-	0.00094	18.6	0.1	0.0018	17.7	0.0	1.6	1	1	0	1	1	1	1	YhjQ	protein
AAA_17	PF13207.1	gi|284172957|ref|YP_003406338.1|	-	0.0031	18.3	0.1	0.007	17.1	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
ATP_bind_1	PF03029.12	gi|284172957|ref|YP_003406338.1|	-	0.0083	15.6	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
DUF87	PF01935.12	gi|284172957|ref|YP_003406338.1|	-	0.0092	15.8	0.0	0.026	14.3	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
SRP54	PF00448.17	gi|284172957|ref|YP_003406338.1|	-	0.014	14.8	0.0	0.093	12.1	0.0	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.1	gi|284172957|ref|YP_003406338.1|	-	0.039	13.9	0.0	0.12	12.3	0.0	1.8	2	1	0	2	2	2	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|284172957|ref|YP_003406338.1|	-	0.046	12.5	0.0	0.1	11.3	0.0	1.5	1	0	0	1	1	1	0	ArgK	protein
MobB	PF03205.9	gi|284172957|ref|YP_003406338.1|	-	0.083	12.5	0.0	0.35	10.5	0.0	1.9	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Fer4_NifH	PF00142.13	gi|284172957|ref|YP_003406338.1|	-	0.088	11.9	0.0	0.17	11.0	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_18	PF13238.1	gi|284172957|ref|YP_003406338.1|	-	0.092	13.0	0.1	0.29	11.4	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|284172957|ref|YP_003406338.1|	-	0.11	11.9	0.0	0.19	11.1	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|284172957|ref|YP_003406338.1|	-	0.16	11.3	0.4	0.67	9.3	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|284172957|ref|YP_003406338.1|	-	0.16	11.5	1.3	1.3	8.5	1.0	2.3	2	1	0	2	2	2	0	AAA	domain
DUF287	PF03384.9	gi|284172959|ref|YP_003406340.1|	-	0.05	13.7	0.8	0.2	11.8	0.1	2.2	2	1	0	2	2	2	0	Drosophila	protein	of	unknown	function,	DUF287
DUF955	PF06114.8	gi|284172963|ref|YP_003406344.1|	-	0.00018	21.2	0.0	0.00028	20.6	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
SprT-like	PF10263.4	gi|284172963|ref|YP_003406344.1|	-	0.0015	18.1	2.7	0.038	13.6	0.1	2.2	1	1	0	2	2	2	2	SprT-like	family
DUF2800	PF10926.3	gi|284172963|ref|YP_003406344.1|	-	0.022	13.8	0.1	0.17	10.9	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2800)
Peptidase_MA_2	PF13485.1	gi|284172963|ref|YP_003406344.1|	-	0.037	14.0	0.0	0.13	12.2	0.0	2.0	2	0	0	2	2	2	0	Peptidase	MA	superfamily
Peptidase_M10	PF00413.19	gi|284172963|ref|YP_003406344.1|	-	0.091	12.4	0.1	0.73	9.5	0.0	2.0	2	0	0	2	2	2	0	Matrixin
ACP53EA	PF06313.6	gi|284172964|ref|YP_003406345.1|	-	0.069	13.1	0.0	0.072	13.0	0.0	1.2	1	0	0	1	1	1	0	Drosophila	ACP53EA	protein
Lar_restr_allev	PF14354.1	gi|284172967|ref|YP_003406348.1|	-	0.027	14.7	0.3	0.033	14.4	0.2	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
PADR1	PF08063.7	gi|284172967|ref|YP_003406348.1|	-	0.028	13.8	0.2	0.043	13.2	0.1	1.3	1	0	0	1	1	1	0	PADR1	(NUC008)	domain
zf-ribbon_3	PF13248.1	gi|284172972|ref|YP_003406353.1|	-	0.00072	18.6	1.5	0.14	11.4	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|284172972|ref|YP_003406353.1|	-	0.0027	17.1	3.3	0.012	15.1	2.3	1.9	1	1	0	1	1	1	1	zinc-ribbon	domain
Arv1	PF04161.8	gi|284172972|ref|YP_003406353.1|	-	0.0034	17.3	0.2	0.0036	17.2	0.1	1.0	1	0	0	1	1	1	1	Arv1-like	family
DZR	PF12773.2	gi|284172972|ref|YP_003406353.1|	-	0.01	15.6	1.8	0.016	15.0	1.3	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ISL3	PF14690.1	gi|284172972|ref|YP_003406353.1|	-	0.032	14.2	0.6	2.3	8.3	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
OrfB_Zn_ribbon	PF07282.6	gi|284172972|ref|YP_003406353.1|	-	0.033	13.8	2.9	0.057	13.0	2.1	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
RNA_POL_M_15KD	PF02150.11	gi|284172972|ref|YP_003406353.1|	-	0.038	13.6	0.4	7.3	6.3	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.5	gi|284172972|ref|YP_003406353.1|	-	0.039	13.9	3.7	0.15	12.0	2.6	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.1	gi|284172972|ref|YP_003406353.1|	-	0.05	12.8	1.3	0.071	12.3	0.9	1.2	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
HypA	PF01155.14	gi|284172972|ref|YP_003406353.1|	-	0.057	13.1	0.5	0.054	13.1	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
RRN7	PF11781.3	gi|284172972|ref|YP_003406353.1|	-	0.063	12.7	1.5	1.8	8.1	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-LITAF-like	PF10601.4	gi|284172972|ref|YP_003406353.1|	-	0.11	12.3	1.3	3	7.7	0.0	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
GATA	PF00320.22	gi|284172972|ref|YP_003406353.1|	-	0.11	11.8	0.7	0.39	10.1	0.5	1.8	1	1	0	1	1	1	0	GATA	zinc	finger
Nudix_N_2	PF14803.1	gi|284172972|ref|YP_003406353.1|	-	0.13	11.9	1.6	0.58	9.8	1.1	1.9	1	1	0	1	1	1	0	Nudix	N-terminal
zf-C3HC4_3	PF13920.1	gi|284172972|ref|YP_003406353.1|	-	0.16	11.6	1.0	0.24	11.0	0.7	1.3	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C4_Topoisom	PF01396.14	gi|284172972|ref|YP_003406353.1|	-	0.17	11.4	0.8	7.6	6.1	0.0	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF329	PF03884.9	gi|284172972|ref|YP_003406353.1|	-	0.18	11.3	0.8	9.9	5.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
YhfH	PF14149.1	gi|284172972|ref|YP_003406353.1|	-	0.18	11.5	0.2	0.18	11.5	0.2	1.7	2	0	0	2	2	2	0	YhfH-like	protein
GFA	PF04828.9	gi|284172972|ref|YP_003406353.1|	-	0.19	11.7	2.3	1.4	8.9	0.1	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
TF_Zn_Ribbon	PF08271.7	gi|284172972|ref|YP_003406353.1|	-	0.24	10.7	2.9	6.8	6.0	0.2	2.1	1	1	0	2	2	2	0	TFIIB	zinc-binding
Sgf11	PF08209.6	gi|284172972|ref|YP_003406353.1|	-	0.27	10.6	2.0	7.9	5.8	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Lar_restr_allev	PF14354.1	gi|284172972|ref|YP_003406353.1|	-	0.34	11.2	3.0	9.7	6.5	2.7	2.0	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
PADR1	PF08063.7	gi|284172972|ref|YP_003406353.1|	-	0.4	10.1	3.2	0.54	9.6	0.1	2.0	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
Rubredoxin	PF00301.15	gi|284172972|ref|YP_003406353.1|	-	0.42	10.5	2.6	4.9	7.1	1.8	2.1	1	1	0	1	1	1	0	Rubredoxin
PhnA_Zn_Ribbon	PF08274.7	gi|284172972|ref|YP_003406353.1|	-	0.56	10.0	4.5	3.9	7.3	3.1	2.0	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Zn_clus	PF00172.13	gi|284172972|ref|YP_003406353.1|	-	0.65	9.9	5.5	6.3	6.7	0.9	2.1	2	0	0	2	2	2	0	Fungal	Zn(2)-Cys(6)	binuclear	cluster	domain
UPF0547	PF10571.4	gi|284172972|ref|YP_003406353.1|	-	0.69	9.6	5.1	4.1	7.2	0.7	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1610	PF07754.6	gi|284172972|ref|YP_003406353.1|	-	0.7	10.0	5.2	2	8.5	0.1	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
DUF164	PF02591.10	gi|284172972|ref|YP_003406353.1|	-	0.8	9.5	3.7	1.3	8.9	1.2	2.2	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|284172972|ref|YP_003406353.1|	-	0.97	9.2	5.0	2.7	7.8	0.4	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
CpXC	PF14353.1	gi|284172972|ref|YP_003406353.1|	-	1	9.3	2.9	4.6	7.2	0.5	1.9	1	1	1	2	2	2	0	CpXC	protein
DUF35_N	PF12172.3	gi|284172972|ref|YP_003406353.1|	-	1.7	8.6	4.9	91	3.1	3.4	2.3	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-trcl	PF13451.1	gi|284172972|ref|YP_003406353.1|	-	4.1	7.1	5.8	32	4.2	4.0	2.0	1	1	0	1	1	1	0	Probable	zinc-binding	domain
zinc_ribbon_4	PF13717.1	gi|284172972|ref|YP_003406353.1|	-	4.4	7.0	5.5	14	5.4	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|284172972|ref|YP_003406353.1|	-	4.7	6.8	5.6	13	5.4	0.5	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Prim_Zn_Ribbon	PF08273.7	gi|284172972|ref|YP_003406353.1|	-	6.6	6.8	8.6	16	5.6	0.9	2.7	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
DUF837	PF05769.6	gi|284172973|ref|YP_003406354.1|	-	0.12	11.9	0.3	0.12	11.8	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF837)
TBCA	PF02970.11	gi|284172974|ref|YP_003406355.1|	-	0.031	14.3	0.2	0.044	13.8	0.1	1.2	1	0	0	1	1	1	0	Tubulin	binding	cofactor	A
PyrI_C	PF02748.10	gi|284172974|ref|YP_003406355.1|	-	0.084	12.3	0.2	0.13	11.7	0.1	1.4	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
C1_1	PF00130.17	gi|284172975|ref|YP_003406356.1|	-	0.037	13.7	2.1	0.059	13.1	1.5	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2318	PF10080.4	gi|284172975|ref|YP_003406356.1|	-	0.079	12.7	0.4	0.11	12.3	0.3	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Lar_restr_allev	PF14354.1	gi|284172975|ref|YP_003406356.1|	-	0.48	10.7	3.7	1.1	9.6	2.6	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Nudix_N_2	PF14803.1	gi|284172975|ref|YP_003406356.1|	-	0.93	9.2	4.7	2.5	7.8	0.4	2.6	3	0	0	3	3	3	0	Nudix	N-terminal
BOFC_N	PF08977.5	gi|284172978|ref|YP_003406359.1|	-	0.11	12.3	0.1	0.26	11.1	0.1	1.6	1	0	0	1	1	1	0	Bypass	of	Forespore	C,	N	terminal
TehB	PF03848.9	gi|284172979|ref|YP_003406360.1|	-	1.8e-18	66.4	0.0	2.1e-18	66.1	0.0	1.0	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_11	PF08241.7	gi|284172979|ref|YP_003406360.1|	-	2.5e-11	43.8	0.0	4.3e-11	43.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|284172979|ref|YP_003406360.1|	-	2.3e-09	37.7	0.0	3.4e-09	37.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|284172979|ref|YP_003406360.1|	-	3.4e-09	36.9	0.0	5.9e-09	36.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|284172979|ref|YP_003406360.1|	-	4e-09	36.3	0.0	4.9e-09	36.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|284172979|ref|YP_003406360.1|	-	7.9e-09	35.2	0.0	1e-08	34.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|284172979|ref|YP_003406360.1|	-	1.5e-08	35.0	0.0	2.2e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|284172979|ref|YP_003406360.1|	-	4.7e-07	29.8	0.0	6.3e-07	29.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|284172979|ref|YP_003406360.1|	-	7.3e-07	28.5	0.0	8.8e-07	28.2	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
TPMT	PF05724.6	gi|284172979|ref|YP_003406360.1|	-	0.00022	20.7	0.0	0.00037	20.0	0.0	1.4	1	1	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
MTS	PF05175.9	gi|284172979|ref|YP_003406360.1|	-	0.00042	19.7	0.1	0.00052	19.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.1	gi|284172979|ref|YP_003406360.1|	-	0.0027	17.4	0.0	0.0033	17.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
SAM_MT	PF04445.8	gi|284172979|ref|YP_003406360.1|	-	0.0028	16.8	0.0	0.0094	15.1	0.0	1.8	1	1	1	2	2	2	1	Putative	SAM-dependent	methyltransferase
RrnaAD	PF00398.15	gi|284172979|ref|YP_003406360.1|	-	0.005	15.8	0.0	0.0064	15.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Adenylate_cycl	PF01295.13	gi|284172979|ref|YP_003406360.1|	-	0.0097	14.2	0.0	0.011	14.0	0.0	1.1	1	0	0	1	1	1	1	Adenylate	cyclase,	class-I
Met_10	PF02475.11	gi|284172979|ref|YP_003406360.1|	-	0.015	14.8	0.1	0.02	14.5	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_4	PF02390.12	gi|284172979|ref|YP_003406360.1|	-	0.023	13.7	0.0	0.035	13.1	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_21	PF05050.7	gi|284172979|ref|YP_003406360.1|	-	0.03	14.2	0.1	0.042	13.7	0.1	1.2	1	0	0	1	1	1	0	Methyltransferase	FkbM	domain
Methyltransf_15	PF09445.5	gi|284172979|ref|YP_003406360.1|	-	0.037	13.5	0.0	0.048	13.2	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
PEPcase_2	PF14010.1	gi|284172979|ref|YP_003406360.1|	-	0.055	11.7	0.1	0.083	11.1	0.1	1.2	1	0	0	1	1	1	0	Phosphoenolpyruvate	carboxylase
MetW	PF07021.7	gi|284172979|ref|YP_003406360.1|	-	0.082	12.2	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
DUF1428	PF07237.6	gi|284172980|ref|YP_003406361.1|	-	2.5e-35	120.4	0.3	2.9e-35	120.2	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1428)
SWIM	PF04434.12	gi|284172981|ref|YP_003406362.1|	-	3.8e-06	26.2	0.3	6e-06	25.6	0.2	1.3	1	0	0	1	1	1	1	SWIM	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|284172982|ref|YP_003406363.1|	-	0.049	12.9	2.3	0.53	9.6	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|284172982|ref|YP_003406363.1|	-	0.078	12.4	5.2	0.24	10.8	0.9	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
PyrI_C	PF02748.10	gi|284172982|ref|YP_003406363.1|	-	0.15	11.5	0.1	0.15	11.5	0.1	2.3	2	1	1	3	3	3	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
PemK	PF02452.12	gi|284172983|ref|YP_003406364.1|	-	4.3e-30	104.1	0.1	4.7e-30	104.0	0.0	1.0	1	0	0	1	1	1	1	PemK-like	protein
eIF-1a	PF01176.14	gi|284172983|ref|YP_003406364.1|	-	0.13	11.6	0.1	0.28	10.6	0.0	1.6	2	0	0	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
Antitoxin-MazE	PF04014.13	gi|284172984|ref|YP_003406365.1|	-	1.5e-10	40.5	2.3	1.8e-10	40.2	1.6	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DDE_Tnp_IS240	PF13610.1	gi|284172987|ref|YP_003406368.1|	-	8.8e-16	58.1	0.1	1.3e-15	57.6	0.1	1.3	1	0	0	1	1	1	1	DDE	domain
DDE_Tnp_IS66	PF03050.9	gi|284172987|ref|YP_003406368.1|	-	0.00051	19.3	0.2	0.00097	18.4	0.2	1.5	1	1	0	1	1	1	1	Transposase	IS66	family
rve	PF00665.21	gi|284172987|ref|YP_003406368.1|	-	0.0015	18.6	0.2	0.0034	17.4	0.1	1.8	2	1	0	2	2	2	1	Integrase	core	domain
MFS_1	PF07690.11	gi|284172988|ref|YP_003406369.1|	-	1.3e-35	122.7	55.1	1.9e-27	95.9	21.9	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
GMC_oxred_N	PF00732.14	gi|284172989|ref|YP_003406370.1|	-	7.2e-90	301.1	0.0	9.5e-90	300.7	0.0	1.2	1	0	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_C	PF05199.8	gi|284172989|ref|YP_003406370.1|	-	1.2e-44	152.1	0.1	1.9e-44	151.4	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.19	gi|284172989|ref|YP_003406370.1|	-	3.9e-07	29.2	0.1	0.002	17.0	0.0	2.6	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|284172989|ref|YP_003406370.1|	-	7.5e-06	26.1	0.0	0.023	14.7	0.0	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|284172989|ref|YP_003406370.1|	-	2.7e-05	23.2	0.1	0.028	13.2	0.0	2.6	3	0	0	3	3	3	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|284172989|ref|YP_003406370.1|	-	0.00042	20.2	0.6	0.0029	17.5	0.0	2.7	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.7	gi|284172989|ref|YP_003406370.1|	-	0.00055	18.9	0.0	0.0012	17.8	0.0	1.5	1	0	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox_2	PF07992.9	gi|284172989|ref|YP_003406370.1|	-	0.044	13.6	0.0	0.23	11.3	0.0	2.2	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|284172989|ref|YP_003406370.1|	-	0.063	11.7	0.0	0.11	10.9	0.0	1.3	1	0	0	1	1	1	0	HI0933-like	protein
Thi4	PF01946.12	gi|284172989|ref|YP_003406370.1|	-	0.068	12.2	0.1	0.16	11.0	0.1	1.6	1	0	0	1	1	1	0	Thi4	family
ApbA	PF02558.11	gi|284172989|ref|YP_003406370.1|	-	0.13	11.7	0.0	1.1	8.7	0.0	2.4	2	1	1	3	3	3	0	Ketopantoate	reductase	PanE/ApbA
Alkyl_sulf_dimr	PF14863.1	gi|284172990|ref|YP_003406371.1|	-	7.1e-31	107.3	0.1	1.3e-30	106.5	0.1	1.4	1	0	0	1	1	1	1	Alkyl	sulfatase	dimerisation
Lactamase_B	PF00753.22	gi|284172990|ref|YP_003406371.1|	-	1.2e-19	70.7	0.4	2.9e-19	69.4	0.3	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|284172990|ref|YP_003406371.1|	-	0.018	14.6	0.6	0.037	13.5	0.4	1.6	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
TPR_16	PF13432.1	gi|284172990|ref|YP_003406371.1|	-	0.18	12.4	2.6	0.58	10.9	1.2	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
HTH_10	PF04967.7	gi|284172991|ref|YP_003406372.1|	-	5.6e-13	48.2	0.0	9.8e-13	47.4	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|284172991|ref|YP_003406372.1|	-	0.0056	16.1	0.2	0.11	12.0	0.1	2.6	1	1	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.11	gi|284172991|ref|YP_003406372.1|	-	0.016	14.4	0.1	0.037	13.3	0.1	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF2774	PF11242.3	gi|284172991|ref|YP_003406372.1|	-	0.07	13.1	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2774)
DDE_Tnp_IS240	PF13610.1	gi|284172992|ref|YP_003406373.1|	-	1.2e-31	109.5	0.0	1.8e-31	108.9	0.0	1.3	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.1	gi|284172992|ref|YP_003406373.1|	-	3.6e-12	45.6	0.9	6.7e-12	44.7	0.6	1.4	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|284172992|ref|YP_003406373.1|	-	0.00017	21.6	0.1	0.00038	20.5	0.1	1.8	1	1	0	1	1	1	1	Integrase	core	domain
rve_2	PF13333.1	gi|284172992|ref|YP_003406373.1|	-	0.00036	20.5	0.1	0.00062	19.7	0.0	1.4	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.9	gi|284172992|ref|YP_003406373.1|	-	0.0021	17.3	0.1	0.0044	16.2	0.0	1.5	1	1	0	1	1	1	1	Transposase	IS66	family
DUF2384	PF09722.5	gi|284172992|ref|YP_003406373.1|	-	0.0036	17.1	0.3	0.52	10.2	0.0	2.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2384)
HTH_28	PF13518.1	gi|284172992|ref|YP_003406373.1|	-	0.56	10.2	2.1	6.4	6.8	0.1	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
PadR	PF03551.9	gi|284172993|ref|YP_003406374.1|	-	1.2e-11	44.2	0.2	1.3e-11	44.0	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|284172993|ref|YP_003406374.1|	-	0.03	14.1	0.1	0.038	13.8	0.1	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
MotA_activ	PF09114.5	gi|284172993|ref|YP_003406374.1|	-	0.082	12.6	0.0	0.095	12.4	0.0	1.2	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
DiS_P_DiS	PF06750.8	gi|284172994|ref|YP_003406375.1|	-	0.096	12.4	0.1	0.14	11.9	0.1	1.4	1	0	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
zinc-ribbons_6	PF07191.7	gi|284172994|ref|YP_003406375.1|	-	0.29	10.9	3.0	0.46	10.3	2.0	1.3	1	0	0	1	1	1	0	zinc-ribbons
HATPase_c	PF02518.21	gi|284172996|ref|YP_003406377.1|	-	2.8e-33	113.9	0.1	6.9e-32	109.4	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.20	gi|284172996|ref|YP_003406377.1|	-	4.3e-13	49.0	0.8	2e-12	46.8	0.1	2.2	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.1	gi|284172996|ref|YP_003406377.1|	-	2.7e-07	30.1	0.0	5e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
PAS_4	PF08448.5	gi|284172996|ref|YP_003406377.1|	-	3e-07	30.4	0.1	9.1e-07	28.9	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.1	gi|284172996|ref|YP_003406377.1|	-	2.6e-06	27.7	0.1	3.3e-05	24.2	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS_10	PF13596.1	gi|284172996|ref|YP_003406377.1|	-	9.9e-05	22.5	0.0	0.00023	21.4	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.19	gi|284172996|ref|YP_003406377.1|	-	0.00048	19.8	0.1	0.0027	17.4	0.0	2.3	3	0	0	3	3	3	1	PAS	fold
HATPase_c_3	PF13589.1	gi|284172996|ref|YP_003406377.1|	-	0.0007	19.2	0.0	0.0016	18.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.1	gi|284172996|ref|YP_003406377.1|	-	0.006	16.3	0.0	0.012	15.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.1	gi|284172996|ref|YP_003406377.1|	-	0.074	12.9	0.5	0.36	10.7	0.0	2.4	2	0	0	2	2	2	0	PAS	domain
adh_short	PF00106.20	gi|284172996|ref|YP_003406377.1|	-	0.13	12.1	0.0	25	4.7	0.0	2.6	2	0	0	2	2	2	0	short	chain	dehydrogenase
OrfB_Zn_ribbon	PF07282.6	gi|284172997|ref|YP_003406378.1|	-	0.003	17.1	0.3	0.006	16.2	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|284172997|ref|YP_003406378.1|	-	0.057	13.3	2.0	7	6.6	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF3797	PF12677.2	gi|284172997|ref|YP_003406378.1|	-	0.14	11.8	2.2	2	8.1	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-Mss51	PF13824.1	gi|284172997|ref|YP_003406378.1|	-	0.23	11.3	1.5	0.52	10.1	1.1	1.6	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.1	gi|284172997|ref|YP_003406378.1|	-	0.42	9.8	2.9	8.4	5.7	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Hexapep	PF00132.19	gi|284173000|ref|YP_003406381.1|	-	1.6e-12	46.2	12.3	9.7e-08	31.1	2.2	3.3	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.9	gi|284173000|ref|YP_003406381.1|	-	1.4e-06	28.4	0.0	2.7e-06	27.5	0.0	1.5	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.1	gi|284173000|ref|YP_003406381.1|	-	2.7e-06	26.8	5.5	0.00015	21.2	1.0	2.6	2	1	0	2	2	2	2	Hexapeptide	repeat	of	succinyl-transferase
DUF1996	PF09362.5	gi|284173000|ref|YP_003406381.1|	-	0.11	12.2	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1996)
SAPS	PF04499.10	gi|284173002|ref|YP_003406383.1|	-	1.3	7.6	3.9	1.1	7.7	2.7	1.1	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
Bromodomain	PF00439.20	gi|284173003|ref|YP_003406384.1|	-	0.13	12.1	0.2	0.2	11.5	0.1	1.3	1	0	0	1	1	1	0	Bromodomain
GCS2	PF04107.8	gi|284173005|ref|YP_003406386.1|	-	5.4e-12	45.4	1.0	1.3e-11	44.1	0.1	1.9	2	1	0	2	2	2	1	Glutamate-cysteine	ligase	family	2(GCS2)
tRNA_anti-codon	PF01336.20	gi|284173007|ref|YP_003406388.1|	-	0.00012	21.8	0.0	0.00016	21.4	0.0	1.2	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Cation_efflux	PF01545.16	gi|284173008|ref|YP_003406389.1|	-	1.9e-64	217.5	6.4	2.1e-64	217.3	4.4	1.0	1	0	0	1	1	1	1	Cation	efflux	family
Zn-ribbon_8	PF09723.5	gi|284173009|ref|YP_003406390.1|	-	0.03	14.2	4.3	0.73	9.8	0.9	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-RING_3	PF14369.1	gi|284173009|ref|YP_003406390.1|	-	0.043	13.8	0.6	1.6	8.7	0.0	2.4	2	0	0	2	2	2	0	zinc-finger
TFIIS_C	PF01096.13	gi|284173009|ref|YP_003406390.1|	-	0.13	11.8	3.8	5.9	6.6	0.3	2.8	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
CDC45	PF02724.9	gi|284173009|ref|YP_003406390.1|	-	1.4	6.8	6.4	1.3	6.9	4.5	1.1	1	0	0	1	1	1	0	CDC45-like	protein
CorC_HlyC	PF03471.12	gi|284173010|ref|YP_003406391.1|	-	0.13	12.0	0.0	0.15	11.8	0.0	1.1	1	0	0	1	1	1	0	Transporter	associated	domain
ACP_syn_III	PF08545.5	gi|284173011|ref|YP_003406392.1|	-	0.14	11.8	0.0	0.27	10.9	0.0	1.5	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DNA_primase_S	PF01896.14	gi|284173014|ref|YP_003406395.1|	-	0.0018	18.0	0.0	0.0049	16.6	0.0	1.7	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
AAA_10	PF12846.2	gi|284173015|ref|YP_003406396.1|	-	3.7e-14	52.8	0.0	9.1e-14	51.5	0.0	1.6	1	0	0	1	1	1	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|284173015|ref|YP_003406396.1|	-	6.5e-09	34.8	0.0	1e-05	24.3	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF87	PF01935.12	gi|284173015|ref|YP_003406396.1|	-	4.6e-07	29.9	0.0	1.2e-06	28.5	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
bPH_2	PF03703.9	gi|284173015|ref|YP_003406396.1|	-	3.9e-06	26.7	0.1	9.4e-06	25.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	PH	domain
FtsK_SpoIIIE	PF01580.13	gi|284173015|ref|YP_003406396.1|	-	0.0005	19.5	0.0	0.0014	18.1	0.0	1.7	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
RNA_helicase	PF00910.17	gi|284173015|ref|YP_003406396.1|	-	0.018	15.1	0.0	0.053	13.7	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
TraG-D_C	PF12696.2	gi|284173015|ref|YP_003406396.1|	-	0.021	14.7	0.3	0.078	12.8	0.0	2.1	2	0	0	2	2	2	0	TraM	recognition	site	of	TraD	and	TraG
AAA_25	PF13481.1	gi|284173015|ref|YP_003406396.1|	-	0.052	12.9	0.0	4.2	6.7	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
DUF853	PF05872.7	gi|284173015|ref|YP_003406396.1|	-	0.094	11.0	0.0	0.16	10.2	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.2	gi|284173016|ref|YP_003406397.1|	-	1.6e-42	146.0	0.8	1.6e-42	146.0	0.6	1.6	2	0	0	2	2	2	1	AAA-like	domain
DUF87	PF01935.12	gi|284173016|ref|YP_003406397.1|	-	2.7e-08	33.9	0.3	2e-07	31.1	0.0	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
HHH_5	PF14520.1	gi|284173016|ref|YP_003406397.1|	-	3.7e-05	23.8	1.2	9.3e-05	22.5	0.1	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DUF4332	PF14229.1	gi|284173016|ref|YP_003406397.1|	-	9.5e-05	22.3	0.1	0.0017	18.3	0.0	2.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
CagE_TrbE_VirB	PF03135.9	gi|284173016|ref|YP_003406397.1|	-	0.038	13.7	0.0	0.11	12.1	0.0	1.7	1	1	0	1	1	1	0	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
DNA_pol_lambd_f	PF10391.4	gi|284173016|ref|YP_003406397.1|	-	0.098	12.2	0.0	0.27	10.8	0.0	1.8	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
Cdd1	PF11731.3	gi|284173016|ref|YP_003406397.1|	-	0.1	12.5	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	Pathogenicity	locus
Sensor	PF13796.1	gi|284173018|ref|YP_003406399.1|	-	0.0095	15.5	0.8	0.012	15.2	0.5	1.1	1	0	0	1	1	1	1	Putative	sensor
AAA	PF00004.24	gi|284173019|ref|YP_003406400.1|	-	1.2e-37	129.0	0.0	2.6e-37	127.9	0.0	1.6	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|284173019|ref|YP_003406400.1|	-	1.4e-08	35.5	0.0	3e-08	34.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|284173019|ref|YP_003406400.1|	-	5.3e-08	33.0	1.2	7.1e-06	26.1	0.8	3.2	1	1	0	1	1	1	1	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|284173019|ref|YP_003406400.1|	-	1.5e-07	30.7	0.0	7.8e-07	28.3	0.0	1.9	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|284173019|ref|YP_003406400.1|	-	7.3e-07	29.0	0.0	2.3e-06	27.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|284173019|ref|YP_003406400.1|	-	3.1e-06	27.1	0.0	1.1e-05	25.3	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|284173019|ref|YP_003406400.1|	-	9.4e-06	25.5	0.0	1.7e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|284173019|ref|YP_003406400.1|	-	1.3e-05	24.6	0.4	0.011	15.0	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|284173019|ref|YP_003406400.1|	-	2e-05	24.7	0.7	0.028	14.5	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|284173019|ref|YP_003406400.1|	-	0.00041	19.1	0.0	0.0011	17.7	0.0	1.6	1	1	1	2	2	2	1	TIP49	C-terminus
AAA_19	PF13245.1	gi|284173019|ref|YP_003406400.1|	-	0.00042	20.0	0.0	0.0093	15.6	0.0	2.6	2	0	0	2	2	2	1	Part	of	AAA	domain
DUF815	PF05673.8	gi|284173019|ref|YP_003406400.1|	-	0.0005	19.0	0.0	0.00083	18.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
IstB_IS21	PF01695.12	gi|284173019|ref|YP_003406400.1|	-	0.00061	19.2	0.1	0.0057	16.0	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|284173019|ref|YP_003406400.1|	-	0.00089	19.5	0.0	0.0017	18.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|284173019|ref|YP_003406400.1|	-	0.0016	18.5	0.0	0.0033	17.5	0.0	1.6	1	0	0	1	1	1	1	RNA	helicase
Sigma54_activat	PF00158.21	gi|284173019|ref|YP_003406400.1|	-	0.003	17.0	0.0	0.15	11.5	0.0	2.3	1	1	0	1	1	1	1	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|284173019|ref|YP_003406400.1|	-	0.0036	16.9	0.1	0.15	11.7	0.0	2.4	1	1	1	2	2	2	1	NACHT	domain
AAA_2	PF07724.9	gi|284173019|ref|YP_003406400.1|	-	0.0092	15.8	0.0	0.032	14.1	0.0	1.9	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
Mg_chelatase	PF01078.16	gi|284173019|ref|YP_003406400.1|	-	0.011	14.9	0.0	0.019	14.1	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_28	PF13521.1	gi|284173019|ref|YP_003406400.1|	-	0.011	15.6	0.5	0.037	13.9	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
Parvo_NS1	PF01057.12	gi|284173019|ref|YP_003406400.1|	-	0.015	14.1	0.0	0.024	13.5	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Zeta_toxin	PF06414.7	gi|284173019|ref|YP_003406400.1|	-	0.02	14.0	0.0	0.078	12.0	0.0	2.0	2	1	0	2	2	2	0	Zeta	toxin
ABC_tran	PF00005.22	gi|284173019|ref|YP_003406400.1|	-	0.021	15.1	0.0	0.047	13.9	0.0	1.7	2	1	0	2	2	1	0	ABC	transporter
KaiC	PF06745.8	gi|284173019|ref|YP_003406400.1|	-	0.035	13.2	0.0	1.1	8.3	0.0	2.4	2	0	0	2	2	2	0	KaiC
Arch_ATPase	PF01637.13	gi|284173019|ref|YP_003406400.1|	-	0.042	13.5	0.1	1.8	8.1	0.1	2.4	1	1	0	1	1	1	0	Archaeal	ATPase
AAA_11	PF13086.1	gi|284173019|ref|YP_003406400.1|	-	0.042	13.4	0.1	0.077	12.5	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_24	PF13479.1	gi|284173019|ref|YP_003406400.1|	-	0.065	12.8	0.0	0.15	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.13	gi|284173019|ref|YP_003406400.1|	-	0.072	12.7	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	dnaA	protein
AAA_23	PF13476.1	gi|284173019|ref|YP_003406400.1|	-	0.11	12.8	0.0	0.3	11.3	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
DUF1418	PF07214.7	gi|284173020|ref|YP_003406401.1|	-	0.11	12.1	0.9	0.22	11.1	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1418)
TrbC	PF04956.8	gi|284173022|ref|YP_003406403.1|	-	6.4e-05	22.8	5.5	7.2e-05	22.7	3.8	1.2	1	0	0	1	1	1	1	TrbC/VIRB2	family
PEN-2	PF10251.4	gi|284173022|ref|YP_003406403.1|	-	0.024	14.8	0.5	0.038	14.2	0.2	1.4	1	1	0	1	1	1	0	Presenilin	enhancer-2	subunit	of	gamma	secretase
DUF3180	PF11377.3	gi|284173022|ref|YP_003406403.1|	-	0.054	13.3	0.7	0.054	13.3	0.5	1.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3180)
DUF998	PF06197.8	gi|284173022|ref|YP_003406403.1|	-	0.085	12.1	8.5	0.28	10.4	5.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
VKOR	PF07884.9	gi|284173022|ref|YP_003406403.1|	-	0.32	10.8	4.4	0.27	11.0	1.4	1.7	1	1	1	2	2	2	0	Vitamin	K	epoxide	reductase	family
DUF4131	PF13567.1	gi|284173022|ref|YP_003406403.1|	-	0.39	10.0	2.3	2.1	7.7	0.8	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF3742	PF12553.3	gi|284173022|ref|YP_003406403.1|	-	1.3	9.5	7.6	0.45	11.0	3.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3742)
HNH	PF01844.18	gi|284173023|ref|YP_003406404.1|	-	1e-12	47.7	6.0	1.4e-12	47.2	4.2	1.2	1	0	0	1	1	1	1	HNH	endonuclease
HNH_2	PF13391.1	gi|284173023|ref|YP_003406404.1|	-	0.01	15.5	1.4	0.018	14.8	1.0	1.4	1	0	0	1	1	1	0	HNH	endonuclease
BNR	PF02012.15	gi|284173024|ref|YP_003406405.1|	-	4.5e-08	31.7	25.5	0.024	14.3	0.1	6.4	7	0	0	7	7	7	5	BNR/Asp-box	repeat
PSII_BNR	PF14870.1	gi|284173024|ref|YP_003406405.1|	-	5.7e-06	25.5	2.2	0.043	12.7	0.1	3.4	2	1	0	3	3	3	2	Photosynthesis	system	II	assembly	factor	YCF48
BNR_2	PF13088.1	gi|284173024|ref|YP_003406405.1|	-	8.1e-05	22.0	7.1	0.16	11.2	0.2	4.2	1	1	2	3	3	3	3	BNR	repeat-like	domain
DUF4185	PF13810.1	gi|284173024|ref|YP_003406405.1|	-	0.00013	20.9	2.6	2	7.2	0.0	4.2	2	2	1	4	4	4	3	Domain	of	unknown	function	(DUF4185)
Mo-co_dimer	PF03404.11	gi|284173024|ref|YP_003406405.1|	-	0.04	13.5	1.9	17	5.0	0.1	3.8	4	0	0	4	4	4	0	Mo-co	oxidoreductase	dimerisation	domain
EPTP	PF03736.12	gi|284173024|ref|YP_003406405.1|	-	0.1	12.3	0.0	0.59	9.9	0.0	2.1	2	0	0	2	2	2	0	EPTP	domain
BNR_3	PF13859.1	gi|284173024|ref|YP_003406405.1|	-	0.47	9.4	2.3	57	2.6	0.0	3.5	4	0	0	4	4	4	0	BNR	repeat-like	domain
PQQ_3	PF13570.1	gi|284173024|ref|YP_003406405.1|	-	1.7	9.0	7.4	22	5.4	0.1	4.2	4	2	0	4	4	4	0	PQQ-like	domain
Wzt_C	PF14524.1	gi|284173028|ref|YP_003406409.1|	-	0.013	15.2	0.0	0.023	14.3	0.0	1.4	1	0	0	1	1	1	0	Wzt	C-terminal	domain
Gram_pos_anchor	PF00746.16	gi|284173028|ref|YP_003406409.1|	-	0.2	11.5	0.1	0.2	11.5	0.1	2.4	2	0	0	2	2	2	0	Gram	positive	anchor
AstE_AspA	PF04952.9	gi|284173029|ref|YP_003406410.1|	-	1.6e-15	56.8	0.0	2.6e-15	56.0	0.0	1.3	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.19	gi|284173029|ref|YP_003406410.1|	-	1.3e-08	34.7	0.7	5.4e-07	29.5	0.5	2.2	1	1	0	1	1	1	1	Zinc	carboxypeptidase
DUF2119	PF09892.4	gi|284173029|ref|YP_003406410.1|	-	0.022	14.0	0.0	0.33	10.1	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2119)
TAT_signal	PF10518.4	gi|284173029|ref|YP_003406410.1|	-	0.24	11.4	3.4	0.46	10.6	2.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence