# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Response_reg PF00072.24 gi|284172859|ref|YP_003406240.1| - 1.2e-15 57.7 0.2 1.4e-15 57.4 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain TackOD1 PF18551.1 gi|284172860|ref|YP_003406241.1| - 1.4e-29 103.1 0.4 2.1e-29 102.5 0.4 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|284172860|ref|YP_003406241.1| - 8.3e-06 24.9 0.0 8.3e-06 24.9 0.0 1.7 2 0 0 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase zinc-ribbons_6 PF07191.12 gi|284172860|ref|YP_003406241.1| - 0.0019 18.1 8.3 0.09 12.8 1.3 2.5 2 0 0 2 2 2 2 zinc-ribbons DZR PF12773.7 gi|284172860|ref|YP_003406241.1| - 0.02 14.9 12.3 0.67 10.0 2.7 2.6 1 1 1 2 2 2 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|284172860|ref|YP_003406241.1| - 0.1 12.6 0.1 0.1 12.6 0.1 3.6 3 1 1 4 4 3 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|284172860|ref|YP_003406241.1| - 0.13 12.3 12.2 0.53 10.3 0.8 3.2 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|284172860|ref|YP_003406241.1| - 0.28 10.8 16.3 2.4 7.8 0.2 4.7 5 0 0 5 5 5 0 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|284172860|ref|YP_003406241.1| - 0.3 11.6 4.6 62 4.3 0.1 3.9 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-HIT PF04438.16 gi|284172860|ref|YP_003406241.1| - 1.4 8.9 8.2 17 5.3 0.0 3.9 3 1 1 4 4 4 0 HIT zinc finger Nudix_N_2 PF14803.6 gi|284172860|ref|YP_003406241.1| - 1.9 8.4 17.9 0.75 9.8 2.4 4.9 4 1 0 4 4 4 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|284172860|ref|YP_003406241.1| - 2 8.5 16.1 2.3 8.3 0.2 3.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon DnaJ_CXXCXGXG PF00684.19 gi|284172860|ref|YP_003406241.1| - 2.4 8.6 8.1 1.8 9.0 0.5 2.6 2 1 0 2 2 2 0 DnaJ central domain zinc_ribbon_15 PF17032.5 gi|284172860|ref|YP_003406241.1| - 3.1 8.6 9.9 56 4.6 9.9 2.3 1 1 0 1 1 1 0 zinc-ribbon family zf-piccolo PF05715.13 gi|284172860|ref|YP_003406241.1| - 3.3 7.9 7.4 9.2 6.5 0.5 2.6 2 0 0 2 2 2 0 Piccolo Zn-finger Rubredoxin PF00301.20 gi|284172860|ref|YP_003406241.1| - 3.5 7.7 9.3 2.7 8.1 0.2 3.6 4 0 0 4 4 4 0 Rubredoxin zf-ribbon_3 PF13248.6 gi|284172860|ref|YP_003406241.1| - 4.3 6.9 6.1 13 5.4 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|284172860|ref|YP_003406241.1| - 6.6 6.8 13.7 1.9 8.4 1.6 4.2 4 1 0 4 4 4 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|284172860|ref|YP_003406241.1| - 8.3 6.3 13.6 18 5.2 0.1 4.3 3 1 0 3 3 3 0 A2L zinc ribbon domain PIN PF01850.21 gi|284172861|ref|YP_003406242.1| - 0.052 14.0 0.5 0.1 13.1 0.2 1.6 2 0 0 2 2 2 0 PIN domain RHH_1 PF01402.21 gi|284172863|ref|YP_003406244.1| - 0.56 10.2 3.4 4.7 7.3 3.4 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family HTH_20 PF12840.7 gi|284172864|ref|YP_003406245.1| - 0.00069 19.6 0.3 0.0018 18.3 0.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HNH PF01844.23 gi|284172866|ref|YP_003406247.1| - 2.7e-06 27.5 0.0 5.7e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|284172866|ref|YP_003406247.1| - 0.0084 15.9 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.6 gi|284172866|ref|YP_003406247.1| - 0.022 14.9 0.3 0.14 12.3 0.3 2.1 1 1 0 1 1 1 0 HNH endonuclease UPF0154 PF03672.13 gi|284172866|ref|YP_003406247.1| - 0.059 13.4 0.0 0.27 11.3 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) Regulator_TrmB PF11495.8 gi|284172868|ref|YP_003406249.1| - 9.4e-05 21.7 0.0 0.00014 21.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_12 PF08461.10 gi|284172868|ref|YP_003406249.1| - 0.0021 18.0 0.2 1.3 9.0 0.0 3.2 2 1 0 2 2 2 2 Ribonuclease R winged-helix domain DtxR PF18357.1 gi|284172868|ref|YP_003406249.1| - 0.42 10.3 1.8 0.93 9.2 1.8 1.6 1 0 0 1 1 1 0 Diphteria toxin repressor SH3 domain ATPase_2 PF01637.18 gi|284172869|ref|YP_003406250.1| - 2.2e-22 80.1 0.0 1.7e-21 77.3 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|284172869|ref|YP_003406250.1| - 4.9e-20 71.8 0.0 9.6e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|284172869|ref|YP_003406250.1| - 6.3e-07 29.5 0.0 1.1e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|284172869|ref|YP_003406250.1| - 2.6e-05 24.5 0.0 5e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284172869|ref|YP_003406250.1| - 0.00014 22.3 0.5 0.0045 17.4 0.5 2.7 1 1 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.7 gi|284172869|ref|YP_003406250.1| - 0.0033 17.3 0.0 0.012 15.5 0.0 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284172869|ref|YP_003406250.1| - 0.0045 16.8 0.0 0.0092 15.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Mrr_cat PF04471.12 gi|284172869|ref|YP_003406250.1| - 0.02 14.9 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Restriction endonuclease HTH_24 PF13412.6 gi|284172869|ref|YP_003406250.1| - 0.072 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284172869|ref|YP_003406250.1| - 0.077 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DiS_P_DiS PF06750.13 gi|284172870|ref|YP_003406251.1| - 0.1 12.7 0.3 0.13 12.4 0.3 1.5 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain DoxX PF07681.12 gi|284172871|ref|YP_003406252.1| - 4.3e-14 52.9 12.1 4.3e-14 52.9 12.1 1.5 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|284172871|ref|YP_003406252.1| - 2.8e-06 27.3 2.2 2.8e-06 27.3 2.2 1.6 2 0 0 2 2 2 1 TQO small subunit DoxD ATP-synt_A PF00119.20 gi|284172871|ref|YP_003406252.1| - 0.029 14.3 3.1 0.037 14.0 3.1 1.1 1 0 0 1 1 1 0 ATP synthase A chain DUF3824 PF12868.7 gi|284172874|ref|YP_003406255.1| - 0.023 15.3 0.9 0.031 14.9 0.9 1.1 1 0 0 1 1 1 0 Domain of unknwon function (DUF3824) FAM176 PF14851.6 gi|284172874|ref|YP_003406255.1| - 0.23 11.1 2.8 0.34 10.5 2.8 1.2 1 0 0 1 1 1 0 FAM176 family HTH_22 PF13309.6 gi|284172875|ref|YP_003406256.1| - 0.01 15.9 0.5 6.9 6.8 0.0 3.4 2 1 1 3 3 3 0 HTH domain Bac_globin PF01152.21 gi|284172877|ref|YP_003406258.1| - 2.8e-17 63.0 0.0 3e-17 62.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|284172877|ref|YP_003406258.1| - 0.00072 19.5 0.0 0.0017 18.3 0.0 1.7 1 1 0 1 1 1 1 Protoglobin STI1 PF17830.1 gi|284172877|ref|YP_003406258.1| - 0.053 13.5 0.4 0.11 12.5 0.2 1.6 2 0 0 2 2 2 0 STI1 domain DUF1604 PF07713.13 gi|284172877|ref|YP_003406258.1| - 0.11 12.3 2.6 3.1 7.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1604) Usp PF00582.26 gi|284172878|ref|YP_003406259.1| - 3.8e-09 37.2 0.0 7.6e-09 36.2 0.0 1.5 1 1 0 1 1 1 1 Universal stress protein family SBP_bac_11 PF13531.6 gi|284172878|ref|YP_003406259.1| - 0.064 13.0 0.1 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF1272 PF06906.11 gi|284172880|ref|YP_003406261.1| - 7.7e-07 29.1 0.7 8.2e-07 29.0 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-C2HC5 PF06221.13 gi|284172880|ref|YP_003406261.1| - 5.2e-05 23.1 0.7 5.4e-05 23.1 0.7 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|284172880|ref|YP_003406261.1| - 0.00033 20.6 1.1 0.00038 20.4 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|284172880|ref|YP_003406261.1| - 0.0012 18.8 0.6 0.0013 18.8 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|284172880|ref|YP_003406261.1| - 0.0019 18.2 3.4 0.0041 17.2 3.4 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|284172880|ref|YP_003406261.1| - 0.0097 15.3 3.1 1.1 8.7 1.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|284172880|ref|YP_003406261.1| - 0.013 15.7 1.3 0.026 14.8 1.3 1.5 1 0 0 1 1 1 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|284172880|ref|YP_003406261.1| - 0.02 14.8 0.5 0.023 14.6 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Spt4 PF06093.13 gi|284172880|ref|YP_003406261.1| - 0.031 14.4 0.6 0.039 14.0 0.6 1.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger TackOD1 PF18551.1 gi|284172880|ref|YP_003406261.1| - 0.034 13.8 0.3 0.034 13.8 0.3 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Prim_Zn_Ribbon PF08273.12 gi|284172880|ref|YP_003406261.1| - 0.044 14.1 2.1 0.044 14.1 2.1 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-AN1 PF01428.16 gi|284172880|ref|YP_003406261.1| - 0.045 13.9 1.6 0.84 9.9 2.2 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger Sgf11 PF08209.11 gi|284172880|ref|YP_003406261.1| - 0.047 13.3 2.1 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rubredoxin_2 PF18073.1 gi|284172880|ref|YP_003406261.1| - 0.047 13.4 3.0 0.11 12.3 3.0 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain DUF1610 PF07754.11 gi|284172880|ref|YP_003406261.1| - 0.05 13.6 4.8 1.8 8.6 2.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf_Rg PF17915.1 gi|284172880|ref|YP_003406261.1| - 0.056 12.8 1.2 0.056 12.8 1.2 1.9 1 1 1 2 2 2 0 Reverse gyrase zinc finger zf-C2H2_4 PF13894.6 gi|284172880|ref|YP_003406261.1| - 0.099 13.5 1.1 8.7 7.5 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.6 gi|284172880|ref|YP_003406261.1| - 0.15 12.0 3.3 7.2 6.6 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal YhfH PF14149.6 gi|284172880|ref|YP_003406261.1| - 0.32 11.0 4.4 2.6 8.1 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein TRAF6_Z2 PF18048.1 gi|284172880|ref|YP_003406261.1| - 0.4 10.8 3.7 0.68 10.1 0.6 2.1 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zf-H2C2_2 PF13465.6 gi|284172880|ref|YP_003406261.1| - 1.5 9.4 3.9 17 6.0 0.5 2.2 1 1 1 2 2 2 0 Zinc-finger double domain PadR PF03551.14 gi|284172881|ref|YP_003406262.1| - 2.2e-12 46.7 0.1 2.6e-12 46.5 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4358 PF14270.6 gi|284172881|ref|YP_003406262.1| - 0.034 14.4 0.0 0.06 13.6 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4358) FUR PF01475.19 gi|284172881|ref|YP_003406262.1| - 0.062 13.4 0.0 0.072 13.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_CodY PF08222.11 gi|284172884|ref|YP_003406265.1| - 0.011 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_20 PF12840.7 gi|284172884|ref|YP_003406265.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PIN PF01850.21 gi|284172885|ref|YP_003406266.1| - 7.4e-15 55.5 0.1 9.2e-15 55.2 0.1 1.0 1 0 0 1 1 1 1 PIN domain HTH_20 PF12840.7 gi|284172886|ref|YP_003406267.1| - 0.0024 17.9 0.1 0.0041 17.2 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172887|ref|YP_003406268.1| - 2e-05 24.4 0.2 3.3e-05 23.7 0.2 1.3 1 0 0 1 1 1 1 HTH domain MerR PF00376.23 gi|284172887|ref|YP_003406268.1| - 0.00044 20.0 0.3 0.0011 18.7 0.3 1.7 1 1 0 1 1 1 1 MerR family regulatory protein DAO PF01266.24 gi|284172887|ref|YP_003406268.1| - 0.00061 19.5 0.0 0.00064 19.4 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase HTH_24 PF13412.6 gi|284172887|ref|YP_003406268.1| - 0.00092 18.7 0.3 0.0018 17.8 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|284172887|ref|YP_003406268.1| - 0.002 17.9 0.5 0.0055 16.5 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.21 gi|284172887|ref|YP_003406268.1| - 0.0082 15.8 0.1 0.025 14.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family NAD_binding_8 PF13450.6 gi|284172887|ref|YP_003406268.1| - 0.063 13.5 0.1 0.18 12.1 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain MarR_2 PF12802.7 gi|284172887|ref|YP_003406268.1| - 0.079 12.9 1.0 0.17 11.8 0.4 1.9 2 0 0 2 2 2 0 MarR family Abhydrolase_6 PF12697.7 gi|284172887|ref|YP_003406268.1| - 0.13 12.9 6.6 0.29 11.7 6.6 1.6 1 1 0 1 1 1 0 Alpha/beta hydrolase family MerR_1 PF13411.6 gi|284172887|ref|YP_003406268.1| - 0.17 12.0 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein DEP PF00610.21 gi|284172889|ref|YP_003406270.1| - 0.075 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) PadR PF03551.14 gi|284172890|ref|YP_003406271.1| - 2.5e-13 49.8 0.2 3e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284172890|ref|YP_003406271.1| - 0.0027 17.7 0.1 0.0035 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4358 PF14270.6 gi|284172890|ref|YP_003406271.1| - 0.027 14.8 0.0 0.041 14.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) HTH_34 PF13601.6 gi|284172890|ref|YP_003406271.1| - 0.1 12.8 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|284172890|ref|YP_003406271.1| - 0.1 12.4 0.1 0.15 11.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DAO PF01266.24 gi|284172893|ref|YP_003406274.1| - 7.5e-66 223.1 0.1 8.5e-66 222.9 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|284172893|ref|YP_003406274.1| - 1.8e-08 34.0 0.1 0.0012 18.1 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|284172893|ref|YP_003406274.1| - 1.1e-07 31.1 0.6 9.2e-06 24.8 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|284172893|ref|YP_003406274.1| - 1.1e-06 29.1 0.2 0.028 15.0 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172893|ref|YP_003406274.1| - 5.1e-06 26.0 0.0 0.0092 15.3 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|284172893|ref|YP_003406274.1| - 1.1e-05 25.5 0.0 3.5e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|284172893|ref|YP_003406274.1| - 1.2e-05 24.2 0.2 0.0045 15.7 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|284172893|ref|YP_003406274.1| - 2.6e-05 23.6 0.2 8.5e-05 21.9 0.1 1.7 2 0 0 2 2 2 1 Thi4 family GMC_oxred_N PF00732.19 gi|284172893|ref|YP_003406274.1| - 0.00022 20.7 0.0 0.26 10.6 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|284172893|ref|YP_003406274.1| - 0.00032 20.7 0.9 0.0059 16.6 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|284172893|ref|YP_003406274.1| - 0.0023 17.1 0.1 0.0047 16.1 0.1 1.5 1 1 0 1 1 1 1 FAD binding domain Amino_oxidase PF01593.24 gi|284172893|ref|YP_003406274.1| - 0.02 14.2 0.3 0.11 11.8 0.1 2.0 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|284172893|ref|YP_003406274.1| - 0.028 13.5 0.6 2.3 7.2 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Mqo PF06039.15 gi|284172893|ref|YP_003406274.1| - 0.056 12.0 0.1 0.077 11.5 0.1 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) ApbA PF02558.16 gi|284172893|ref|YP_003406274.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|284172893|ref|YP_003406274.1| - 0.091 11.8 0.6 1.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|284172893|ref|YP_003406274.1| - 0.18 11.0 0.3 0.93 8.7 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|284172893|ref|YP_003406274.1| - 0.18 12.0 0.1 0.37 11.0 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain SSF PF00474.17 gi|284172895|ref|YP_003406276.1| - 3.8e-68 230.2 32.2 4.8e-68 229.9 32.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family SPT_ssu-like PF11779.8 gi|284172896|ref|YP_003406277.1| - 0.014 15.0 0.9 0.015 14.9 0.9 1.1 1 0 0 1 1 1 0 Small subunit of serine palmitoyltransferase-like AAA_17 PF13207.6 gi|284172897|ref|YP_003406278.1| - 0.099 13.1 0.0 0.099 13.1 0.0 1.0 1 0 0 1 1 1 0 AAA domain HalOD1 PF18545.1 gi|284172898|ref|YP_003406279.1| - 3.1e-20 72.2 0.0 4e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|284172899|ref|YP_003406280.1| - 3.2e-15 55.7 0.0 4.9e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|284172899|ref|YP_003406280.1| - 0.00043 19.8 0.2 0.001 18.6 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284172899|ref|YP_003406280.1| - 0.082 12.8 0.2 0.19 11.6 0.2 1.6 1 1 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|284172901|ref|YP_003406282.1| - 0.00016 21.2 0.1 0.00054 19.5 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284172901|ref|YP_003406282.1| - 0.00021 21.1 1.9 0.00022 21.1 0.1 2.0 2 0 0 2 2 1 1 HTH domain GntR PF00392.21 gi|284172901|ref|YP_003406282.1| - 0.0012 18.4 0.5 0.0063 16.1 0.2 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|284172901|ref|YP_003406282.1| - 0.0015 18.2 0.7 0.013 15.3 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain MerR PF00376.23 gi|284172901|ref|YP_003406282.1| - 0.0043 16.8 0.2 0.015 15.1 0.2 1.9 1 0 0 1 1 1 1 MerR family regulatory protein MarR_2 PF12802.7 gi|284172901|ref|YP_003406282.1| - 0.0044 16.9 6.1 0.23 11.4 0.5 3.4 2 1 0 2 2 2 2 MarR family HTH_3 PF01381.22 gi|284172901|ref|YP_003406282.1| - 0.0056 16.7 0.2 0.036 14.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|284172901|ref|YP_003406282.1| - 0.0072 16.7 0.2 0.092 13.1 0.2 3.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|284172901|ref|YP_003406282.1| - 0.0079 16.1 0.0 0.041 13.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172901|ref|YP_003406282.1| - 0.023 14.5 0.3 0.097 12.5 0.3 2.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3516 PF12029.8 gi|284172901|ref|YP_003406282.1| - 0.037 13.1 1.6 0.06 12.4 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3516) Sigma70_r4_2 PF08281.12 gi|284172901|ref|YP_003406282.1| - 0.071 12.8 0.1 1.4 8.6 0.0 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|284172901|ref|YP_003406282.1| - 0.072 13.1 0.7 0.39 10.7 0.2 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MerR_1 PF13411.6 gi|284172901|ref|YP_003406282.1| - 0.15 12.2 0.0 0.39 10.8 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein EC042_2821 PF18740.1 gi|284172903|ref|YP_003406284.1| - 0.016 15.1 0.0 0.018 14.9 0.0 1.1 1 0 0 1 1 1 0 EC042_2821-lke REase DUF1108 PF06531.11 gi|284172903|ref|YP_003406284.1| - 0.029 14.7 0.1 0.049 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) LSM PF01423.22 gi|284172903|ref|YP_003406284.1| - 0.035 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 LSM domain DUF1408 PF07193.11 gi|284172903|ref|YP_003406284.1| - 0.07 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1408) HTH_24 PF13412.6 gi|284172904|ref|YP_003406285.1| - 5.2e-06 25.9 0.0 6.1e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RepL PF05732.11 gi|284172904|ref|YP_003406285.1| - 0.0056 16.1 0.0 0.0057 16.1 0.0 1.1 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_AsnC-type PF13404.6 gi|284172904|ref|YP_003406285.1| - 0.017 15.0 0.1 0.022 14.6 0.1 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|284172904|ref|YP_003406285.1| - 0.019 14.8 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|284172904|ref|YP_003406285.1| - 0.11 12.8 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator U5_2-snRNA_bdg PF10597.9 gi|284172905|ref|YP_003406286.1| - 0.14 12.2 0.1 0.14 12.2 0.1 1.0 1 0 0 1 1 1 0 U5-snRNA binding site 2 of PrP8 DUF2207 PF09972.9 gi|284172908|ref|YP_003406289.1| - 0.013 14.3 0.1 0.013 14.3 0.1 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) PAP2 PF01569.21 gi|284172909|ref|YP_003406290.1| - 5.4e-16 58.6 2.4 5.4e-16 58.6 2.4 1.9 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|284172909|ref|YP_003406290.1| - 5e-07 29.6 6.6 5e-07 29.6 6.6 2.1 2 2 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|284172909|ref|YP_003406290.1| - 0.016 15.7 1.2 0.045 14.3 1.2 1.8 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Phage_integrase PF00589.22 gi|284172911|ref|YP_003406292.1| - 2.6e-17 63.2 0.0 1.1e-16 61.1 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|284172911|ref|YP_003406292.1| - 2.7e-05 24.5 0.1 0.002 18.6 0.0 3.2 3 1 1 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284172911|ref|YP_003406292.1| - 0.00012 22.3 0.1 0.00062 20.0 0.0 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|284172911|ref|YP_003406292.1| - 0.004 17.5 0.0 0.011 16.1 0.0 1.8 1 0 0 1 1 1 1 Phage integrase SAM-like domain TM1506 PF08973.10 gi|284172911|ref|YP_003406292.1| - 0.16 11.7 0.0 0.43 10.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1893) DDE_Tnp_IS240 PF13610.6 gi|284172913|ref|YP_003406294.1| - 2.1e-36 125.3 0.0 3.5e-36 124.5 0.0 1.4 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|284172913|ref|YP_003406294.1| - 2e-10 40.3 0.4 3.8e-10 39.4 0.4 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|284172913|ref|YP_003406294.1| - 0.00037 20.7 0.3 0.0007 19.8 0.3 1.7 1 1 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|284172913|ref|YP_003406294.1| - 0.0078 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|284172913|ref|YP_003406294.1| - 0.1 12.6 1.2 0.98 9.5 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2384) HTH_24 PF13412.6 gi|284172916|ref|YP_003406297.1| - 1.4e-05 24.5 0.0 2.2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|284172916|ref|YP_003406297.1| - 0.00035 20.2 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|284172916|ref|YP_003406297.1| - 0.0014 18.5 0.1 0.0017 18.2 0.1 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|284172916|ref|YP_003406297.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 gi|284172916|ref|YP_003406297.1| - 0.02 14.5 0.1 0.048 13.3 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|284172916|ref|YP_003406297.1| - 0.049 13.6 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|284172916|ref|YP_003406297.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|284172916|ref|YP_003406297.1| - 0.12 12.2 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|284172916|ref|YP_003406297.1| - 0.15 12.4 0.0 0.2 12.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PEPCK_ATP PF01293.20 gi|284172917|ref|YP_003406298.1| - 3e-60 204.2 0.0 8.4e-60 202.7 0.0 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase LPD22 PF18834.1 gi|284172917|ref|YP_003406298.1| - 0.036 14.3 0.9 1 9.6 0.0 3.4 2 1 1 3 3 3 0 Large polyvalent protein associated domain 22 SOR_SNZ PF01680.17 gi|284172918|ref|YP_003406299.1| - 1.7e-102 341.5 8.0 2.2e-102 341.1 8.0 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|284172918|ref|YP_003406299.1| - 7.5e-10 38.5 3.4 2.1e-05 23.9 0.2 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|284172918|ref|YP_003406299.1| - 0.00029 20.0 0.6 0.22 10.6 0.1 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.24 gi|284172918|ref|YP_003406299.1| - 0.02 14.5 0.2 2.5 7.6 0.1 2.4 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|284172918|ref|YP_003406299.1| - 0.079 12.1 0.0 0.87 8.7 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase PALP PF00291.25 gi|284172919|ref|YP_003406300.1| - 6.5e-61 206.3 1.8 7.5e-61 206.1 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ala_racemase_N PF01168.20 gi|284172920|ref|YP_003406301.1| - 3.4e-25 89.0 0.1 5e-25 88.4 0.1 1.2 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain D-ser_dehydrat PF14031.6 gi|284172920|ref|YP_003406301.1| - 8.8e-21 74.4 0.0 2.1e-20 73.1 0.0 1.7 1 0 0 1 1 1 1 Putative serine dehydratase domain IclR PF01614.18 gi|284172921|ref|YP_003406302.1| - 1.9e-22 79.5 0.0 2.2e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial transcriptional regulator IclR PF01614.18 gi|284172922|ref|YP_003406303.1| - 1.2e-27 96.3 0.0 3.5e-27 94.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172922|ref|YP_003406303.1| - 4.1e-10 39.3 0.0 8.6e-10 38.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|284172922|ref|YP_003406303.1| - 4.6e-06 26.4 0.1 2e-05 24.4 0.0 2.1 3 0 0 3 3 2 1 MarR family MarR PF01047.22 gi|284172922|ref|YP_003406303.1| - 4.6e-05 23.3 0.0 9.5e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|284172922|ref|YP_003406303.1| - 7.7e-05 22.2 0.0 0.00022 20.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172922|ref|YP_003406303.1| - 0.001 18.9 0.0 0.0056 16.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|284172922|ref|YP_003406303.1| - 0.0063 16.5 0.0 0.018 15.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|284172922|ref|YP_003406303.1| - 0.019 15.0 0.1 0.05 13.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|284172922|ref|YP_003406303.1| - 0.022 15.2 0.0 0.067 13.7 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|284172922|ref|YP_003406303.1| - 0.066 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_10 PF04967.12 gi|284172922|ref|YP_003406303.1| - 0.07 12.9 0.0 0.52 10.2 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain B-block_TFIIIC PF04182.12 gi|284172922|ref|YP_003406303.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|284172922|ref|YP_003406303.1| - 0.079 12.9 0.0 0.26 11.2 0.0 2.0 1 0 0 1 1 1 0 HTH domain HTH_23 PF13384.6 gi|284172922|ref|YP_003406303.1| - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain PheRS_DBD1 PF18552.1 gi|284172922|ref|YP_003406303.1| - 0.15 11.8 0.0 0.34 10.7 0.0 1.6 1 0 0 1 1 1 0 PheRS DNA binding domain 1 tRNA-synt_2c PF01411.19 gi|284172923|ref|YP_003406304.1| - 1.1e-13 50.6 0.1 1.7e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|284172923|ref|YP_003406304.1| - 1.1e-09 38.2 0.2 2.2e-09 37.3 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain PRP4 PF08799.11 gi|284172923|ref|YP_003406304.1| - 0.033 13.7 0.4 0.078 12.6 0.4 1.6 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like SDF PF00375.18 gi|284172924|ref|YP_003406305.1| - 4.1e-116 388.2 29.2 4.7e-116 388.0 29.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF641 PF04859.12 gi|284172926|ref|YP_003406307.1| - 0.00015 22.1 4.3 0.00025 21.4 3.5 1.8 2 0 0 2 2 1 1 Plant protein of unknown function (DUF641) SPATA24 PF15175.6 gi|284172926|ref|YP_003406307.1| - 0.0025 17.7 2.4 0.0048 16.8 2.4 1.5 1 0 0 1 1 1 1 Spermatogenesis-associated protein 24 DUF1664 PF07889.12 gi|284172926|ref|YP_003406307.1| - 0.0075 16.3 2.4 0.017 15.2 2.4 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|284172926|ref|YP_003406307.1| - 0.012 15.0 6.9 0.026 13.8 6.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Exonuc_VII_L PF02601.15 gi|284172926|ref|YP_003406307.1| - 0.015 14.9 1.0 0.02 14.4 1.0 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit FlgN PF05130.12 gi|284172926|ref|YP_003406307.1| - 0.019 15.4 4.7 0.019 15.4 4.7 1.7 2 0 0 2 2 1 0 FlgN protein KIP1 PF07765.12 gi|284172926|ref|YP_003406307.1| - 0.025 14.7 1.4 0.054 13.6 1.4 1.6 1 0 0 1 1 1 0 KIP1-like protein UPF0242 PF06785.11 gi|284172926|ref|YP_003406307.1| - 0.031 14.4 3.5 0.058 13.5 3.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus YkyA PF10368.9 gi|284172926|ref|YP_003406307.1| - 0.038 13.7 5.8 0.066 12.9 5.8 1.4 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF16 PF01519.16 gi|284172926|ref|YP_003406307.1| - 0.042 14.3 3.0 0.11 13.0 3.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF16 MAP65_ASE1 PF03999.12 gi|284172926|ref|YP_003406307.1| - 0.055 12.2 3.4 0.085 11.5 3.4 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) FAM76 PF16046.5 gi|284172926|ref|YP_003406307.1| - 0.058 12.7 2.8 0.1 11.9 2.8 1.3 1 0 0 1 1 1 0 FAM76 protein DUF2570 PF10828.8 gi|284172926|ref|YP_003406307.1| - 0.065 13.1 3.4 0.11 12.3 3.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) DUF4407 PF14362.6 gi|284172926|ref|YP_003406307.1| - 0.068 12.5 6.3 0.15 11.4 6.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CobN-Mg_chel PF02514.16 gi|284172926|ref|YP_003406307.1| - 0.073 10.8 3.0 0.12 10.1 3.0 1.2 1 0 0 1 1 1 0 CobN/Magnesium Chelatase Golgin_A5 PF09787.9 gi|284172926|ref|YP_003406307.1| - 0.08 12.4 9.0 0.13 11.7 9.0 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 Pox_A_type_inc PF04508.12 gi|284172926|ref|YP_003406307.1| - 0.12 12.3 4.8 2.9 7.9 0.2 2.9 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat HMMR_N PF15905.5 gi|284172926|ref|YP_003406307.1| - 0.13 11.7 8.2 0.23 10.9 8.2 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Fib_alpha PF08702.10 gi|284172926|ref|YP_003406307.1| - 0.15 12.3 2.9 0.33 11.1 2.9 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DASH_Spc19 PF08287.11 gi|284172926|ref|YP_003406307.1| - 0.15 11.9 5.8 0.35 10.7 5.8 1.6 1 0 0 1 1 1 0 Spc19 Spc7 PF08317.11 gi|284172926|ref|YP_003406307.1| - 0.25 10.2 6.9 0.41 9.5 6.9 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein TcdA_TcdB PF12919.7 gi|284172926|ref|YP_003406307.1| - 0.27 10.5 4.2 0.46 9.7 4.2 1.2 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain TMF_DNA_bd PF12329.8 gi|284172926|ref|YP_003406307.1| - 0.38 10.8 8.8 0.81 9.7 8.8 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HalX PF08663.10 gi|284172926|ref|YP_003406307.1| - 0.39 11.1 12.1 1.1 9.6 1.3 2.7 1 1 1 2 2 2 0 HalX domain CorA PF01544.18 gi|284172926|ref|YP_003406307.1| - 0.57 9.4 4.5 0.99 8.7 4.5 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SlyX PF04102.12 gi|284172926|ref|YP_003406307.1| - 0.6 10.8 9.7 2.7 8.7 9.5 2.3 1 1 0 1 1 1 0 SlyX AKNA PF12443.8 gi|284172926|ref|YP_003406307.1| - 0.99 10.1 5.3 30 5.4 3.7 3.0 2 1 1 3 3 3 0 AT-hook-containing transcription factor Csm1_N PF18504.1 gi|284172926|ref|YP_003406307.1| - 1.3 9.4 9.5 11 6.4 3.0 2.7 1 1 1 2 2 2 0 Csm1 N-terminal domain Synaptobrevin PF00957.21 gi|284172926|ref|YP_003406307.1| - 1.5 8.7 3.9 3.1 7.6 3.9 1.4 1 0 0 1 1 1 0 Synaptobrevin ISG65-75 PF11727.8 gi|284172926|ref|YP_003406307.1| - 1.6 7.9 6.0 0.51 9.5 3.3 1.4 2 0 0 2 2 1 0 Invariant surface glycoprotein FemAB PF02388.16 gi|284172926|ref|YP_003406307.1| - 1.8 7.4 4.3 3.8 6.3 3.9 1.6 2 0 0 2 2 2 0 FemAB family Atg14 PF10186.9 gi|284172926|ref|YP_003406307.1| - 2.4 7.2 6.8 0.87 8.6 3.9 1.6 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 XhlA PF10779.9 gi|284172926|ref|YP_003406307.1| - 3.6 7.9 7.4 2.1 8.6 3.6 2.4 1 1 1 2 2 2 0 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|284172926|ref|YP_003406307.1| - 8 6.8 13.6 1 9.7 8.1 2.3 2 1 1 3 3 2 0 ABC transporter C-terminal domain PAP1 PF08601.10 gi|284172927|ref|YP_003406308.1| - 4.8 6.8 11.9 6 6.5 11.9 1.3 1 0 0 1 1 1 0 Transcription factor PAP1 Spc7 PF08317.11 gi|284172928|ref|YP_003406309.1| - 0.00019 20.5 27.2 0.0083 15.0 10.5 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF4407 PF14362.6 gi|284172928|ref|YP_003406309.1| - 0.00056 19.4 15.3 0.00084 18.8 15.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) GAS PF13851.6 gi|284172928|ref|YP_003406309.1| - 0.00063 19.2 12.3 0.00063 19.2 12.3 2.2 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|284172928|ref|YP_003406309.1| - 0.00075 19.7 23.2 0.017 15.4 7.9 2.7 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.12 gi|284172928|ref|YP_003406309.1| - 0.00078 19.5 25.4 0.013 15.5 9.0 2.6 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein SMC_N PF02463.19 gi|284172928|ref|YP_003406309.1| - 0.002 17.6 0.3 0.0029 17.1 0.3 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Fib_alpha PF08702.10 gi|284172928|ref|YP_003406309.1| - 0.0025 18.0 18.1 0.059 13.6 6.2 2.3 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF4201 PF13870.6 gi|284172928|ref|YP_003406309.1| - 0.0034 17.1 18.8 0.02 14.6 10.3 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) IFT57 PF10498.9 gi|284172928|ref|YP_003406309.1| - 0.0038 16.3 6.6 0.0038 16.3 6.6 2.2 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 TMF_TATA_bd PF12325.8 gi|284172928|ref|YP_003406309.1| - 0.0043 17.3 11.5 0.0043 17.3 11.5 3.3 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Prefoldin PF02996.17 gi|284172928|ref|YP_003406309.1| - 0.013 15.4 20.5 0.61 10.0 0.9 4.3 2 2 2 4 4 4 0 Prefoldin subunit DivIC PF04977.15 gi|284172928|ref|YP_003406309.1| - 0.014 15.1 30.5 0.048 13.4 1.8 4.3 1 1 3 4 4 4 0 Septum formation initiator Phage_GP20 PF06810.11 gi|284172928|ref|YP_003406309.1| - 0.016 15.0 18.5 0.027 14.3 8.4 2.9 2 1 1 3 3 2 0 Phage minor structural protein GP20 BLOC1_2 PF10046.9 gi|284172928|ref|YP_003406309.1| - 0.03 14.6 17.0 1.1 9.6 3.4 3.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|284172928|ref|YP_003406309.1| - 0.032 14.7 2.1 0.032 14.7 2.1 3.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|284172928|ref|YP_003406309.1| - 0.045 14.2 13.2 8.3e+02 0.5 12.6 4.0 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.11 gi|284172928|ref|YP_003406309.1| - 0.045 13.8 11.8 0.46 10.6 1.8 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CENP-H PF05837.12 gi|284172928|ref|YP_003406309.1| - 0.082 13.3 22.7 0.14 12.6 2.4 3.2 1 1 0 2 2 2 0 Centromere protein H (CENP-H) bZIP_2 PF07716.15 gi|284172928|ref|YP_003406309.1| - 0.1 12.7 0.1 0.1 12.7 0.1 4.4 3 1 0 4 4 3 0 Basic region leucine zipper Baculo_PEP_C PF04513.12 gi|284172928|ref|YP_003406309.1| - 0.11 12.5 7.5 2.9 7.9 1.4 2.8 2 1 1 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sec8_exocyst PF04048.14 gi|284172928|ref|YP_003406309.1| - 0.13 12.2 5.8 0.08 12.8 1.2 2.6 2 1 0 2 2 2 0 Sec8 exocyst complex component specific domain Golgin_A5 PF09787.9 gi|284172928|ref|YP_003406309.1| - 0.17 11.3 33.7 0.11 11.9 16.9 2.9 1 1 2 3 3 3 0 Golgin subfamily A member 5 APG6_N PF17675.1 gi|284172928|ref|YP_003406309.1| - 0.19 12.3 39.6 1.2 9.6 9.2 3.5 1 1 2 3 3 3 0 Apg6 coiled-coil region BNIP2 PF12496.8 gi|284172928|ref|YP_003406309.1| - 0.22 12.0 14.0 0.46 10.9 14.0 1.6 1 1 0 1 1 1 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 T3SSipB PF16535.5 gi|284172928|ref|YP_003406309.1| - 0.33 11.4 3.3 1 9.8 3.3 1.9 1 1 0 1 1 1 0 Type III cell invasion protein SipB DUF1664 PF07889.12 gi|284172928|ref|YP_003406309.1| - 0.34 10.9 17.1 0.86 9.7 3.6 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF4988 PF16378.5 gi|284172928|ref|YP_003406309.1| - 0.42 10.3 7.6 3.3 7.3 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function MapZ_EC1 PF18041.1 gi|284172928|ref|YP_003406309.1| - 0.42 10.8 5.3 0.69 10.2 0.2 2.9 2 1 1 3 3 3 0 MapZ extracellular domain 1 HemX PF04375.14 gi|284172928|ref|YP_003406309.1| - 0.46 9.7 15.5 0.046 13.0 3.2 2.4 2 1 1 3 3 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase AAA_13 PF13166.6 gi|284172928|ref|YP_003406309.1| - 0.47 9.0 22.8 0.26 9.9 5.6 2.4 2 1 1 3 3 3 0 AAA domain Tweety PF04906.13 gi|284172928|ref|YP_003406309.1| - 0.48 9.0 2.3 9.4 4.8 0.5 2.2 2 0 0 2 2 2 0 Tweety Laminin_II PF06009.12 gi|284172928|ref|YP_003406309.1| - 0.51 10.4 14.6 0.73 9.8 4.5 2.7 1 1 1 2 2 2 0 Laminin Domain II Imm7 PF15585.6 gi|284172928|ref|YP_003406309.1| - 0.56 10.5 4.0 2.9 8.2 3.3 2.4 1 1 1 2 2 2 0 Immunity protein 7 DHR10 PF18595.1 gi|284172928|ref|YP_003406309.1| - 0.63 10.1 32.9 2.4 8.2 12.4 2.8 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain TssO PF17561.2 gi|284172928|ref|YP_003406309.1| - 0.64 10.1 9.8 5.1 7.2 0.3 3.1 1 1 2 3 3 3 0 Type VI secretion system, TssO Nup54 PF13874.6 gi|284172928|ref|YP_003406309.1| - 0.79 9.8 16.0 0.1 12.7 7.7 2.5 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 DUF3450 PF11932.8 gi|284172928|ref|YP_003406309.1| - 0.83 8.9 22.6 8.8 5.5 22.6 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF3584 PF12128.8 gi|284172928|ref|YP_003406309.1| - 0.86 7.0 24.2 1 6.8 24.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) FAP206 PF12018.8 gi|284172928|ref|YP_003406309.1| - 0.92 9.0 7.6 5.1 6.5 7.6 2.0 1 1 0 1 1 1 0 Domain of unknown function ABC_tran_CTD PF16326.5 gi|284172928|ref|YP_003406309.1| - 0.94 9.8 33.3 1.7 9.0 8.4 4.0 1 1 2 3 3 3 0 ABC transporter C-terminal domain Occludin_ELL PF07303.13 gi|284172928|ref|YP_003406309.1| - 1 10.1 12.2 2 9.2 4.0 2.9 1 1 2 3 3 3 0 Occludin homology domain Cep57_CLD PF14073.6 gi|284172928|ref|YP_003406309.1| - 1 9.4 21.7 1.8 8.5 21.7 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 DUF1599 PF07659.11 gi|284172928|ref|YP_003406309.1| - 1.2 9.6 4.4 25 5.4 0.8 2.9 2 0 0 2 2 2 0 Nucleotide modification associated domain 1 FadA PF09403.10 gi|284172928|ref|YP_003406309.1| - 1.2 9.6 18.4 0.098 13.1 7.9 2.6 1 1 0 2 2 2 0 Adhesion protein FadA Spc24 PF08286.11 gi|284172928|ref|YP_003406309.1| - 1.6 9.0 28.4 0.4 10.9 3.1 4.2 1 1 3 4 4 4 0 Spc24 subunit of Ndc80 MCPsignal PF00015.21 gi|284172928|ref|YP_003406309.1| - 1.8 8.4 8.9 1.6 8.5 0.6 2.9 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF489 PF04356.12 gi|284172928|ref|YP_003406309.1| - 1.8 8.5 5.0 2.5 8.1 1.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF489) FlaC_arch PF05377.11 gi|284172928|ref|YP_003406309.1| - 2.1 8.8 29.6 0.77 10.2 2.2 4.7 4 1 1 5 5 4 0 Flagella accessory protein C (FlaC) ERM PF00769.19 gi|284172928|ref|YP_003406309.1| - 2.3 7.9 30.0 12 5.7 30.0 1.9 1 1 0 1 1 1 0 Ezrin/radixin/moesin family ACCA PF03255.14 gi|284172928|ref|YP_003406309.1| - 2.4 8.0 18.4 1.3 8.8 1.7 3.3 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KxDL PF10241.9 gi|284172928|ref|YP_003406309.1| - 2.5 8.5 7.1 3.4 8.0 1.5 2.9 2 1 1 3 3 3 0 Uncharacterized conserved protein DUF948 PF06103.11 gi|284172928|ref|YP_003406309.1| - 2.6 8.4 5.4 3.4 8.0 1.3 3.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) HSBP1 PF06825.12 gi|284172928|ref|YP_003406309.1| - 2.7 7.9 16.3 6.3 6.7 0.4 4.0 2 2 0 2 2 2 0 Heat shock factor binding protein 1 Fez1 PF06818.15 gi|284172928|ref|YP_003406309.1| - 3.3 8.1 26.0 4.9 7.5 8.8 2.2 1 1 1 2 2 2 0 Fez1 DUF2203 PF09969.9 gi|284172928|ref|YP_003406309.1| - 3.3 8.5 17.9 0.42 11.3 3.5 2.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Fmp27_WPPW PF10359.9 gi|284172928|ref|YP_003406309.1| - 3.4 6.4 21.9 0.82 8.5 8.0 2.2 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Tex_N PF09371.10 gi|284172928|ref|YP_003406309.1| - 3.8 7.2 17.2 0.92 9.2 4.9 2.5 2 0 0 2 2 2 0 Tex-like protein N-terminal domain RPW8 PF05659.11 gi|284172928|ref|YP_003406309.1| - 3.9 7.2 12.6 1.7 8.3 1.6 3.0 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 bZIP_1 PF00170.21 gi|284172928|ref|YP_003406309.1| - 4.4 7.5 17.7 1.2 9.3 0.1 4.2 2 2 2 4 4 4 0 bZIP transcription factor Snapin_Pallidin PF14712.6 gi|284172928|ref|YP_003406309.1| - 5.3 7.5 17.0 1.2 9.6 5.8 3.3 1 1 2 3 3 3 0 Snapin/Pallidin HlyD_2 PF12700.7 gi|284172928|ref|YP_003406309.1| - 5.4 5.6 16.2 2.1 7.0 10.2 2.0 1 1 1 2 2 2 0 HlyD family secretion protein Atg14 PF10186.9 gi|284172928|ref|YP_003406309.1| - 5.4 6.0 24.1 2 7.4 8.6 2.4 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|284172928|ref|YP_003406309.1| - 5.5 6.5 16.1 68 2.9 16.1 2.3 1 1 1 2 2 2 0 Exonuclease VII, large subunit JIP_LZII PF16471.5 gi|284172928|ref|YP_003406309.1| - 6.4 7.0 25.9 0.32 11.2 2.6 3.8 2 2 1 3 3 3 0 JNK-interacting protein leucine zipper II DUF2959 PF11172.8 gi|284172928|ref|YP_003406309.1| - 7 6.8 18.0 1.7 8.8 1.0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) ATG16 PF08614.11 gi|284172928|ref|YP_003406309.1| - 7.8 6.7 34.3 1.7 8.8 12.1 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) LppA PF16708.5 gi|284172928|ref|YP_003406309.1| - 7.8 6.4 9.1 0.32 10.9 2.1 2.1 2 1 0 2 2 2 0 Lipoprotein confined to pathogenic Mycobacterium Rho_N PF07498.12 gi|284172930|ref|YP_003406311.1| - 0.054 13.4 0.1 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain HalOD1 PF18545.1 gi|284172933|ref|YP_003406314.1| - 2.5e-17 62.9 0.8 3.3e-17 62.5 0.8 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TrmB PF01978.19 gi|284172934|ref|YP_003406315.1| - 2.4e-15 56.2 0.0 7.2e-15 54.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|284172934|ref|YP_003406315.1| - 2.1e-08 33.6 0.0 3e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB MarR_2 PF12802.7 gi|284172934|ref|YP_003406315.1| - 0.062 13.2 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|284172934|ref|YP_003406315.1| - 0.064 13.8 0.0 0.29 11.7 0.0 2.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain Acyl_transf_3 PF01757.22 gi|284172936|ref|YP_003406317.1| - 0.047 12.8 11.6 0.052 12.6 11.6 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF4349 PF14257.6 gi|284172936|ref|YP_003406317.1| - 0.073 12.5 0.5 0.096 12.1 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) DUF2270 PF10028.9 gi|284172937|ref|YP_003406318.1| - 7.6e-75 250.5 8.1 9.2e-75 250.3 8.1 1.1 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) SPC12 PF06645.13 gi|284172937|ref|YP_003406318.1| - 0.024 14.7 2.1 2.2 8.4 0.2 2.5 3 0 0 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DctQ PF04290.12 gi|284172937|ref|YP_003406318.1| - 0.074 13.0 10.3 0.45 10.4 3.5 2.3 2 1 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF485 PF04341.12 gi|284172937|ref|YP_003406318.1| - 0.97 9.4 7.7 0.063 13.2 0.8 2.2 2 1 0 2 2 2 0 Protein of unknown function, DUF485 FA_desaturase PF00487.24 gi|284172937|ref|YP_003406318.1| - 1 9.1 6.6 2.4 7.9 0.6 2.1 1 1 1 2 2 2 0 Fatty acid desaturase FixQ PF05545.11 gi|284172937|ref|YP_003406318.1| - 2.7 8.0 8.3 10 6.1 0.0 3.8 4 0 0 4 4 4 0 Cbb3-type cytochrome oxidase component FixQ AAA_31 PF13614.6 gi|284172939|ref|YP_003406320.1| - 2.8e-28 99.0 0.0 4.8e-28 98.3 0.0 1.4 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|284172939|ref|YP_003406320.1| - 5.5e-14 52.3 0.0 8.6e-14 51.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|284172939|ref|YP_003406320.1| - 1.4e-12 47.6 0.0 7.4e-11 42.0 0.0 2.1 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284172939|ref|YP_003406320.1| - 1.3e-10 41.2 0.0 2.5e-08 33.7 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|284172939|ref|YP_003406320.1| - 4.7e-07 29.4 0.2 0.0014 17.9 0.2 2.3 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|284172939|ref|YP_003406320.1| - 1.1e-06 28.1 0.1 2.3e-06 27.0 0.1 1.7 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|284172939|ref|YP_003406320.1| - 1.8e-05 24.3 0.0 0.0028 17.2 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|284172939|ref|YP_003406320.1| - 0.0047 16.2 0.0 0.057 12.7 0.0 2.2 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|284172939|ref|YP_003406320.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|284172939|ref|YP_003406320.1| - 0.039 12.9 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|284172939|ref|YP_003406320.1| - 0.082 13.5 0.1 0.69 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|284172939|ref|YP_003406320.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AbiEii PF08843.11 gi|284172940|ref|YP_003406321.1| - 7.8e-40 137.3 0.2 9.5e-40 137.0 0.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system AbiEi_1 PF09407.10 gi|284172941|ref|YP_003406322.1| - 3e-11 43.8 0.1 2.7e-10 40.7 0.0 2.0 2 0 0 2 2 2 1 AbiEi antitoxin C-terminal domain AbiEi_4 PF13338.6 gi|284172941|ref|YP_003406322.1| - 5.6e-08 32.8 0.3 1.9e-07 31.1 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin MarR_2 PF12802.7 gi|284172941|ref|YP_003406322.1| - 0.00013 21.8 0.3 0.00044 20.1 0.2 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|284172941|ref|YP_003406322.1| - 0.016 15.0 0.3 0.19 11.5 0.1 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|284172941|ref|YP_003406322.1| - 0.048 14.0 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator AlphaC_C PF17480.2 gi|284172941|ref|YP_003406322.1| - 0.1 12.6 0.0 14 5.8 0.0 2.4 2 0 0 2 2 2 0 AlphaC C-terminal AbiEi_3_N PF17194.4 gi|284172941|ref|YP_003406322.1| - 0.11 12.5 0.0 0.58 10.2 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin N-terminal domain HTH_DeoR PF08220.12 gi|284172941|ref|YP_003406322.1| - 0.14 11.9 0.2 1 9.2 0.0 2.2 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain Cdc6_C PF09079.11 gi|284172942|ref|YP_003406323.1| - 1.3e-16 60.3 0.1 3.2e-16 59.1 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|284172942|ref|YP_003406323.1| - 7.4e-13 49.0 0.0 2.1e-12 47.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|284172942|ref|YP_003406323.1| - 3e-08 34.2 0.7 1e-07 32.5 0.1 2.2 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|284172942|ref|YP_003406323.1| - 3.1e-05 24.0 0.1 8.3e-05 22.6 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|284172942|ref|YP_003406323.1| - 5.4e-05 23.2 0.0 0.00019 21.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|284172942|ref|YP_003406323.1| - 0.00025 20.8 0.0 0.00048 19.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|284172942|ref|YP_003406323.1| - 0.001 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|284172942|ref|YP_003406323.1| - 0.0012 18.6 0.0 0.0026 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|284172942|ref|YP_003406323.1| - 0.0043 16.3 0.0 0.0076 15.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain TniB PF05621.11 gi|284172942|ref|YP_003406323.1| - 0.0047 16.4 0.0 0.0089 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|284172942|ref|YP_003406323.1| - 0.0052 17.2 0.1 0.043 14.2 0.1 2.5 1 1 0 1 1 1 1 RNA helicase AAA_19 PF13245.6 gi|284172942|ref|YP_003406323.1| - 0.0059 16.9 0.0 0.016 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|284172942|ref|YP_003406323.1| - 0.034 14.6 0.8 0.16 12.4 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Torsin PF06309.11 gi|284172942|ref|YP_003406323.1| - 0.038 14.1 0.0 0.41 10.8 0.0 2.2 2 0 0 2 2 2 0 Torsin Adeno_IVa2 PF02456.15 gi|284172942|ref|YP_003406323.1| - 0.042 12.6 0.0 0.078 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_7 PF12775.7 gi|284172942|ref|YP_003406323.1| - 0.043 13.3 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|284172942|ref|YP_003406323.1| - 0.046 13.8 0.1 0.22 11.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|284172942|ref|YP_003406323.1| - 0.075 13.4 0.4 0.25 11.7 0.4 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_32 PF13654.6 gi|284172942|ref|YP_003406323.1| - 0.11 11.2 0.6 4.9 5.8 0.2 2.1 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|284172942|ref|YP_003406323.1| - 0.11 12.4 0.0 0.47 10.4 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Mg_chelatase_C PF13335.6 gi|284172942|ref|YP_003406323.1| - 0.13 12.9 3.1 0.47 11.1 0.9 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI C-terminal NACHT PF05729.12 gi|284172942|ref|YP_003406323.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PadR PF03551.14 gi|284172944|ref|YP_003406325.1| - 5.1e-17 61.6 0.4 6.6e-17 61.2 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|284172944|ref|YP_003406325.1| - 0.0035 17.8 0.1 0.0045 17.4 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|284172944|ref|YP_003406325.1| - 0.0052 16.6 0.0 0.0082 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.7 gi|284172944|ref|YP_003406325.1| - 0.015 15.2 0.1 24 4.9 0.0 3.0 3 0 0 3 3 3 0 MarR family HTH_45 PF14947.6 gi|284172944|ref|YP_003406325.1| - 0.022 14.7 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|284172944|ref|YP_003406325.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Octopine_DH PF02317.17 gi|284172946|ref|YP_003406327.1| - 0.014 15.5 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TrmB PF01978.19 gi|284172946|ref|YP_003406327.1| - 0.027 14.3 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|284172946|ref|YP_003406327.1| - 0.029 14.5 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_24 PF13412.6 gi|284172948|ref|YP_003406329.1| - 1.9e-07 30.6 0.0 3.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172948|ref|YP_003406329.1| - 0.00092 19.0 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.9 gi|284172948|ref|YP_003406329.1| - 0.0045 17.1 0.0 0.0094 16.0 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|284172948|ref|YP_003406329.1| - 0.012 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|284172948|ref|YP_003406329.1| - 0.029 14.2 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|284172948|ref|YP_003406329.1| - 0.04 13.8 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pneumo_ncap PF03246.13 gi|284172948|ref|YP_003406329.1| - 0.065 12.0 0.0 0.074 11.8 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein HTH_20 PF12840.7 gi|284172948|ref|YP_003406329.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172948|ref|YP_003406329.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Peptidase_M10 PF00413.24 gi|284172949|ref|YP_003406330.1| - 0.042 13.7 3.0 0.041 13.7 3.0 1.1 1 0 0 1 1 1 0 Matrixin HalOD1 PF18545.1 gi|284172950|ref|YP_003406331.1| - 8.4e-19 67.6 0.0 2.9e-18 65.9 0.0 2.0 2 0 0 2 2 2 1 Halobacterial output domain 1 CbiK PF06180.11 gi|284172950|ref|YP_003406331.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) zf-C2H2 PF00096.26 gi|284172951|ref|YP_003406332.1| - 0.016 15.6 0.1 0.022 15.2 0.1 1.2 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 gi|284172951|ref|YP_003406332.1| - 0.028 14.2 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 C2H2-type zinc-finger domain Zap1_zf2 PF18217.1 gi|284172951|ref|YP_003406332.1| - 0.039 13.9 0.8 0.062 13.3 0.8 1.3 1 0 0 1 1 1 0 Zap1 zinc finger 2 zf_C2H2_ZHX PF18387.1 gi|284172951|ref|YP_003406332.1| - 0.07 12.8 0.2 0.088 12.5 0.2 1.1 1 0 0 1 1 1 0 Zinc-fingers and homeoboxes C2H2 finger domain FOXP-CC PF16159.5 gi|284172951|ref|YP_003406332.1| - 0.36 11.5 0.1 0.36 11.5 0.1 1.3 2 0 0 2 2 2 0 FOXP coiled-coil domain TrmB PF01978.19 gi|284172953|ref|YP_003406334.1| - 6.4e-19 67.6 0.0 1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|284172953|ref|YP_003406334.1| - 0.0028 17.5 0.2 0.0087 15.9 0.2 1.8 1 1 0 1 1 1 1 MarR family Regulator_TrmB PF11495.8 gi|284172953|ref|YP_003406334.1| - 0.0064 15.7 0.0 0.0088 15.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_IclR PF09339.10 gi|284172953|ref|YP_003406334.1| - 0.035 13.9 0.3 0.21 11.4 0.0 2.3 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|284172953|ref|YP_003406334.1| - 0.043 14.3 0.0 0.11 13.0 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|284172953|ref|YP_003406334.1| - 0.049 13.8 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|284172953|ref|YP_003406334.1| - 0.17 11.9 0.0 0.76 9.8 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family DUF664 PF04978.12 gi|284172953|ref|YP_003406334.1| - 0.18 12.2 4.4 0.8 10.1 0.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF664) NicO PF03824.16 gi|284172955|ref|YP_003406336.1| - 1.9e-06 27.4 7.3 3.2e-06 26.7 7.3 1.6 1 1 0 1 1 1 1 High-affinity nickel-transport protein DUF4199 PF13858.6 gi|284172955|ref|YP_003406336.1| - 0.13 12.7 13.8 1.7 9.1 2.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) NikR_C PF08753.11 gi|284172956|ref|YP_003406337.1| - 6.4e-18 64.7 0.3 1.1e-17 64.0 0.3 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|284172956|ref|YP_003406337.1| - 0.0066 16.3 0.2 0.011 15.6 0.2 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family AAA_31 PF13614.6 gi|284172957|ref|YP_003406338.1| - 6.4e-22 78.3 0.0 8.8e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284172957|ref|YP_003406338.1| - 2.9e-12 46.8 0.0 3.5e-12 46.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|284172957|ref|YP_003406338.1| - 6.8e-07 28.8 0.0 2.3e-06 27.0 0.0 2.0 2 1 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|284172957|ref|YP_003406338.1| - 5.5e-06 26.0 0.0 9.7e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284172957|ref|YP_003406338.1| - 4.8e-05 22.9 0.0 0.00012 21.6 0.0 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 gi|284172957|ref|YP_003406338.1| - 0.00011 22.1 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MipZ PF09140.11 gi|284172957|ref|YP_003406338.1| - 0.00035 19.9 2.3 0.032 13.5 0.0 2.5 3 0 0 3 3 3 2 ATPase MipZ AAA_24 PF13479.6 gi|284172957|ref|YP_003406338.1| - 0.0064 16.2 0.1 0.014 15.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|284172957|ref|YP_003406338.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF87 PF01935.17 gi|284172957|ref|YP_003406338.1| - 0.01 15.9 0.0 0.03 14.4 0.0 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain SRP54 PF00448.22 gi|284172957|ref|YP_003406338.1| - 0.025 14.2 0.0 0.15 11.6 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|284172957|ref|YP_003406338.1| - 0.05 13.1 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Zeta_toxin PF06414.12 gi|284172957|ref|YP_003406338.1| - 0.072 12.4 0.2 0.25 10.6 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|284172957|ref|YP_003406338.1| - 0.095 12.3 0.6 1.1 8.8 0.0 2.5 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 gi|284172957|ref|YP_003406338.1| - 0.1 11.5 0.0 0.25 10.3 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF287 PF03384.14 gi|284172959|ref|YP_003406340.1| - 0.061 13.7 0.8 0.25 11.8 0.2 2.2 2 1 0 2 2 2 0 Drosophila protein of unknown function, DUF287 Peptidase_M78 PF06114.13 gi|284172963|ref|YP_003406344.1| - 0.00033 20.6 0.0 0.00053 19.9 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain SprT-like PF10263.9 gi|284172963|ref|YP_003406344.1| - 0.05 13.4 0.0 0.16 11.9 0.0 1.8 2 0 0 2 2 2 0 SprT-like family OGG_N PF07934.12 gi|284172963|ref|YP_003406344.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain ACP53EA PF06313.11 gi|284172964|ref|YP_003406345.1| - 0.092 13.0 0.1 0.12 12.6 0.0 1.3 1 1 0 1 1 1 0 Drosophila ACP53EA protein DUF4288 PF14119.6 gi|284172965|ref|YP_003406346.1| - 0.13 12.7 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4288) zinc_ribbon_15 PF17032.5 gi|284172965|ref|YP_003406346.1| - 5.1 7.9 7.4 18 6.2 0.6 3.0 2 1 1 3 3 3 0 zinc-ribbon family Lar_restr_allev PF14354.6 gi|284172967|ref|YP_003406348.1| - 0.037 14.4 0.2 0.043 14.2 0.2 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar HalOD1 PF18545.1 gi|284172971|ref|YP_003406352.1| - 1e-15 57.7 0.1 1.2e-15 57.5 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 zf-ribbon_3 PF13248.6 gi|284172972|ref|YP_003406353.1| - 0.0033 16.8 3.5 0.056 12.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|284172972|ref|YP_003406353.1| - 0.0038 17.2 1.2 0.0051 16.8 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon PADR1 PF08063.12 gi|284172972|ref|YP_003406353.1| - 0.0073 16.1 1.0 0.44 10.4 0.1 2.1 2 0 0 2 2 2 1 PADR1 (NUC008) domain Zn-ribbon_8 PF09723.10 gi|284172972|ref|YP_003406353.1| - 0.0078 16.3 2.3 0.014 15.5 2.3 1.5 1 1 0 1 1 1 1 Zinc ribbon domain DUF1610 PF07754.11 gi|284172972|ref|YP_003406353.1| - 0.012 15.6 4.4 0.1 12.6 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.6 gi|284172972|ref|YP_003406353.1| - 0.015 16.0 1.6 0.77 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|284172972|ref|YP_003406353.1| - 0.017 15.2 0.5 0.018 15.1 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|284172972|ref|YP_003406353.1| - 0.025 14.3 3.7 0.72 9.7 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|284172972|ref|YP_003406353.1| - 0.036 14.0 3.0 0.06 13.3 3.0 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|284172972|ref|YP_003406353.1| - 0.054 12.8 1.1 0.075 12.4 1.1 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-RING_7 PF02591.15 gi|284172972|ref|YP_003406353.1| - 0.074 13.2 1.3 2.4 8.4 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF35_N PF12172.8 gi|284172972|ref|YP_003406353.1| - 0.17 11.8 3.5 2.8 7.9 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Arv1 PF04161.13 gi|284172972|ref|YP_003406353.1| - 0.2 11.8 0.7 0.21 11.7 0.7 1.0 1 0 0 1 1 1 0 Arv1-like family HscB_4_cys PF18256.1 gi|284172972|ref|YP_003406353.1| - 0.22 11.4 4.0 9.6 6.1 4.0 2.3 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif PhnA_Zn_Ribbon PF08274.12 gi|284172972|ref|YP_003406353.1| - 0.3 11.1 3.6 1.7 8.6 3.6 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|284172972|ref|YP_003406353.1| - 0.36 10.4 3.2 6.5 6.4 0.3 2.1 1 1 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|284172972|ref|YP_003406353.1| - 0.53 10.3 5.1 1.3 9.0 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|284172972|ref|YP_003406353.1| - 0.55 10.0 4.6 4.5 7.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-LITAF-like PF10601.9 gi|284172972|ref|YP_003406353.1| - 0.65 10.3 4.6 4.3 7.7 0.5 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain PyrI_C PF02748.15 gi|284172974|ref|YP_003406355.1| - 0.086 12.8 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF4908 PF16252.5 gi|284172974|ref|YP_003406355.1| - 0.11 12.0 0.2 0.13 11.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4908) Zn-C2H2_12 PF18112.1 gi|284172975|ref|YP_003406356.1| - 0.019 15.4 2.0 1.4 9.4 0.0 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain C1_1 PF00130.22 gi|284172975|ref|YP_003406356.1| - 0.028 14.3 1.9 0.04 13.8 1.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Mu-like_Com PF10122.9 gi|284172975|ref|YP_003406356.1| - 0.03 13.8 1.2 0.031 13.7 0.0 1.6 2 0 0 2 2 2 0 Mu-like prophage protein Com Lar_restr_allev PF14354.6 gi|284172975|ref|YP_003406356.1| - 0.034 14.5 0.9 0.034 14.5 0.9 1.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar DUF2318 PF10080.9 gi|284172975|ref|YP_003406356.1| - 0.042 14.0 0.4 0.052 13.7 0.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-RRN7 PF11781.8 gi|284172975|ref|YP_003406356.1| - 0.16 11.7 0.3 0.16 11.7 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Polysacc_lyase PF14099.6 gi|284172976|ref|YP_003406357.1| - 0.12 12.2 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide lyase TehB PF03848.14 gi|284172979|ref|YP_003406360.1| - 1.1e-17 64.0 0.0 1.4e-17 63.8 0.0 1.0 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_25 PF13649.6 gi|284172979|ref|YP_003406360.1| - 8.3e-14 52.1 0.0 1.6e-13 51.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|284172979|ref|YP_003406360.1| - 1.1e-11 45.2 0.0 1.8e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|284172979|ref|YP_003406360.1| - 1.8e-09 37.7 0.0 3.2e-09 36.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|284172979|ref|YP_003406360.1| - 2e-08 34.8 0.0 3.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|284172979|ref|YP_003406360.1| - 8.4e-07 28.5 0.0 1e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|284172979|ref|YP_003406360.1| - 1.6e-06 28.0 0.0 1.8e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|284172979|ref|YP_003406360.1| - 0.00026 20.7 0.0 0.00045 20.0 0.0 1.4 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|284172979|ref|YP_003406360.1| - 0.0011 18.5 0.1 0.0016 18.0 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|284172979|ref|YP_003406360.1| - 0.0015 18.6 0.0 0.0018 18.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain SAM_MT PF04445.13 gi|284172979|ref|YP_003406360.1| - 0.0032 16.9 0.0 0.0047 16.4 0.0 1.3 1 1 0 1 1 1 1 Putative SAM-dependent methyltransferase Met_10 PF02475.16 gi|284172979|ref|YP_003406360.1| - 0.0035 17.1 0.1 0.0045 16.8 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|284172979|ref|YP_003406360.1| - 0.0042 17.0 0.0 0.0059 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_33 PF10017.9 gi|284172979|ref|YP_003406360.1| - 0.032 13.4 0.0 0.039 13.1 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent PEPcase_2 PF14010.6 gi|284172979|ref|YP_003406360.1| - 0.057 11.9 0.1 0.095 11.2 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase Methyltransf_15 PF09445.10 gi|284172979|ref|YP_003406360.1| - 0.061 12.9 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|284172979|ref|YP_003406360.1| - 0.099 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|284172979|ref|YP_003406360.1| - 0.1 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF1428 PF07237.11 gi|284172980|ref|YP_003406361.1| - 1.1e-36 125.1 0.5 1.3e-36 124.9 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1428) NIPSNAP PF07978.13 gi|284172980|ref|YP_003406361.1| - 0.12 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 NIPSNAP SWIM PF04434.17 gi|284172981|ref|YP_003406362.1| - 4.3e-06 26.3 0.3 6.1e-06 25.8 0.3 1.3 1 0 0 1 1 1 1 SWIM zinc finger TF_Zn_Ribbon PF08271.12 gi|284172982|ref|YP_003406363.1| - 0.028 13.9 2.0 0.48 10.0 0.2 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding PemK_toxin PF02452.17 gi|284172983|ref|YP_003406364.1| - 8.2e-32 109.9 0.1 9e-32 109.8 0.1 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system eIF-1a PF01176.19 gi|284172983|ref|YP_003406364.1| - 0.13 12.1 0.4 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 MazE_antitoxin PF04014.18 gi|284172984|ref|YP_003406365.1| - 3.1e-10 39.7 1.8 3.9e-10 39.4 1.8 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|284172984|ref|YP_003406365.1| - 0.014 15.8 0.0 0.019 15.4 0.0 1.3 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin DDE_Tnp_IS240 PF13610.6 gi|284172987|ref|YP_003406368.1| - 1.3e-16 61.1 0.1 2e-16 60.5 0.1 1.3 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|284172987|ref|YP_003406368.1| - 0.0026 17.3 0.3 0.0059 16.1 0.3 1.6 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.26 gi|284172987|ref|YP_003406368.1| - 0.0032 17.6 0.1 0.0066 16.6 0.1 1.7 1 1 0 1 1 1 1 Integrase core domain Pico_P2B PF01552.17 gi|284172987|ref|YP_003406368.1| - 0.11 12.6 0.1 4.5 7.5 0.0 2.5 2 1 0 2 2 2 0 Picornavirus 2B protein MFS_1 PF07690.16 gi|284172988|ref|YP_003406369.1| - 1.4e-35 122.8 55.3 2.9e-27 95.5 31.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily GMC_oxred_N PF00732.19 gi|284172989|ref|YP_003406370.1| - 8.7e-90 301.1 0.0 1.1e-89 300.7 0.0 1.2 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_C PF05199.13 gi|284172989|ref|YP_003406370.1| - 1.1e-43 149.2 0.1 1.8e-43 148.5 0.1 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|284172989|ref|YP_003406370.1| - 2.6e-05 23.5 0.2 0.03 13.4 0.0 2.6 3 0 0 3 3 3 2 FAD binding domain Lycopene_cycl PF05834.12 gi|284172989|ref|YP_003406370.1| - 0.0001 21.5 0.1 0.00027 20.1 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|284172989|ref|YP_003406370.1| - 0.00019 21.1 0.1 0.021 14.4 0.0 2.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|284172989|ref|YP_003406370.1| - 0.001 19.2 0.9 0.0034 17.6 0.0 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284172989|ref|YP_003406370.1| - 0.0013 18.1 0.0 0.041 13.1 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172989|ref|YP_003406370.1| - 0.0097 15.2 0.0 4.2 6.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|284172989|ref|YP_003406370.1| - 0.08 11.6 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.17 gi|284172989|ref|YP_003406370.1| - 0.1 11.8 0.1 0.19 10.9 0.1 1.5 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.16 gi|284172989|ref|YP_003406370.1| - 0.14 11.8 0.1 0.79 9.4 0.0 2.2 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA Alkyl_sulf_dimr PF14863.6 gi|284172990|ref|YP_003406371.1| - 1.8e-29 103.0 0.0 5.5e-29 101.4 0.1 1.7 2 0 0 2 2 2 1 Alkyl sulfatase dimerisation Lactamase_B PF00753.27 gi|284172990|ref|YP_003406371.1| - 5.8e-20 72.1 5.0 1.7e-19 70.7 2.9 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|284172990|ref|YP_003406371.1| - 0.0012 18.4 0.1 0.0025 17.4 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HTH_10 PF04967.12 gi|284172991|ref|YP_003406372.1| - 5.2e-13 48.6 0.0 9.2e-13 47.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|284172991|ref|YP_003406372.1| - 0.0068 16.1 0.2 0.13 12.0 0.2 2.6 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284172991|ref|YP_003406372.1| - 0.017 14.6 0.1 0.042 13.4 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DUF2774 PF11242.8 gi|284172991|ref|YP_003406372.1| - 0.085 13.1 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) SgrR_N PF12793.7 gi|284172991|ref|YP_003406372.1| - 0.14 12.4 0.0 0.29 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term DDE_Tnp_IS240 PF13610.6 gi|284172992|ref|YP_003406373.1| - 4.5e-38 130.6 0.0 6.9e-38 130.0 0.0 1.3 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|284172992|ref|YP_003406373.1| - 1.6e-10 40.6 0.6 3.1e-10 39.7 0.6 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.26 gi|284172992|ref|YP_003406373.1| - 0.00017 21.8 0.1 0.00032 20.9 0.1 1.7 1 1 0 1 1 1 1 Integrase core domain rve_2 PF13333.6 gi|284172992|ref|YP_003406373.1| - 0.001 19.2 0.1 0.0019 18.3 0.1 1.4 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|284172992|ref|YP_003406373.1| - 0.15 12.1 0.7 0.98 9.5 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2384) PadR PF03551.14 gi|284172993|ref|YP_003406374.1| - 4.7e-12 45.7 0.2 5.7e-12 45.4 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284172993|ref|YP_003406374.1| - 0.063 13.3 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DiS_P_DiS PF06750.13 gi|284172994|ref|YP_003406375.1| - 0.11 12.6 0.1 0.16 12.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Leucyl-specific PF14795.6 gi|284172995|ref|YP_003406376.1| - 0.055 13.5 0.2 0.94 9.6 0.0 2.9 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain tRNA_anti_2 PF13742.6 gi|284172995|ref|YP_003406376.1| - 0.073 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain HATPase_c PF02518.26 gi|284172996|ref|YP_003406377.1| - 2.4e-31 108.5 0.1 5.8e-30 104.1 0.0 2.2 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|284172996|ref|YP_003406377.1| - 6.6e-13 48.5 0.8 5.7e-12 45.5 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|284172996|ref|YP_003406377.1| - 3.6e-07 30.4 0.1 1.1e-06 28.9 0.1 1.9 1 0 0 1 1 1 1 PAS fold HATPase_c_5 PF14501.6 gi|284172996|ref|YP_003406377.1| - 5.9e-07 29.3 0.0 1.3e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.7 gi|284172996|ref|YP_003406377.1| - 3.3e-05 24.1 0.0 0.00021 21.5 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|284172996|ref|YP_003406377.1| - 0.00045 20.1 0.0 0.00095 19.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|284172996|ref|YP_003406377.1| - 0.00059 19.8 0.1 0.0033 17.4 0.0 2.3 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.6 gi|284172996|ref|YP_003406377.1| - 0.0026 17.7 0.0 0.0054 16.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|284172996|ref|YP_003406377.1| - 0.021 15.4 0.0 0.046 14.3 0.0 1.6 1 0 0 1 1 1 0 PAS domain DUF4922 PF16269.5 gi|284172996|ref|YP_003406377.1| - 0.066 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4922) OrfB_Zn_ribbon PF07282.11 gi|284172997|ref|YP_003406378.1| - 0.0037 17.2 0.4 0.0069 16.3 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|284172997|ref|YP_003406378.1| - 0.057 13.5 1.2 8.6 6.6 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|284172997|ref|YP_003406378.1| - 0.12 12.2 0.5 0.12 12.2 0.5 2.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|284172997|ref|YP_003406378.1| - 0.13 12.3 2.6 0.3 11.2 2.2 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_C2H2_10 PF18414.1 gi|284172997|ref|YP_003406378.1| - 2.2 7.9 4.9 22 4.7 0.1 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF3797 PF12677.7 gi|284172997|ref|YP_003406378.1| - 4 7.4 7.5 2.3 8.2 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) RNA_POL_M_15KD PF02150.16 gi|284172997|ref|YP_003406378.1| - 7.3 6.6 6.8 0.78 9.7 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Hexapep PF00132.24 gi|284173000|ref|YP_003406381.1| - 9.9e-13 47.3 9.9 2.7e-07 30.0 2.2 2.5 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|284173000|ref|YP_003406381.1| - 7.2e-08 32.8 0.0 1.3e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|284173000|ref|YP_003406381.1| - 0.00025 20.7 1.5 0.00025 20.7 1.5 2.8 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SDA1 PF05285.12 gi|284173002|ref|YP_003406383.1| - 0.36 10.2 26.6 0.48 9.8 26.6 1.2 1 0 0 1 1 1 0 SDA1 SLC12 PF03522.15 gi|284173002|ref|YP_003406383.1| - 0.42 9.6 1.0 0.56 9.2 1.0 1.1 1 0 0 1 1 1 0 Solute carrier family 12 Presenilin PF01080.17 gi|284173002|ref|YP_003406383.1| - 4.3 6.0 4.4 5.4 5.7 4.4 1.1 1 0 0 1 1 1 0 Presenilin Nop14 PF04147.12 gi|284173002|ref|YP_003406383.1| - 9.1 4.3 27.6 12 4.0 27.6 1.1 1 0 0 1 1 1 0 Nop14-like family Bromodomain PF00439.25 gi|284173003|ref|YP_003406384.1| - 0.22 11.6 0.1 0.37 10.9 0.1 1.3 1 0 0 1 1 1 0 Bromodomain GCS2 PF04107.13 gi|284173005|ref|YP_003406386.1| - 4.1e-11 42.8 1.1 8.1e-11 41.8 0.2 1.9 2 1 0 2 2 2 1 Glutamate-cysteine ligase family 2(GCS2) tRNA_anti-codon PF01336.25 gi|284173007|ref|YP_003406388.1| - 0.00037 20.4 0.0 0.00051 20.0 0.0 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Cation_efflux PF01545.21 gi|284173008|ref|YP_003406389.1| - 4.5e-38 131.0 13.2 5.4e-38 130.7 13.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|284173008|ref|YP_003406389.1| - 0.0011 19.0 2.1 0.0017 18.5 2.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF3954 PF13128.6 gi|284173008|ref|YP_003406389.1| - 0.0049 16.7 0.7 0.017 14.9 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3954) Zn-ribbon_8 PF09723.10 gi|284173009|ref|YP_003406390.1| - 0.017 15.3 4.1 0.54 10.4 1.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-DNL PF05180.12 gi|284173009|ref|YP_003406390.1| - 0.078 12.9 0.1 12 5.9 0.1 2.2 2 0 0 2 2 2 0 DNL zinc finger zinc_ribbon_9 PF14369.6 gi|284173009|ref|YP_003406390.1| - 0.08 13.2 0.6 4.2 7.7 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon Zn_ribbon_SprT PF17283.2 gi|284173009|ref|YP_003406390.1| - 0.15 12.0 4.2 0.6 10.1 0.4 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Nop14 PF04147.12 gi|284173009|ref|YP_003406390.1| - 0.3 9.3 7.7 0.32 9.1 7.7 1.1 1 0 0 1 1 1 0 Nop14-like family zf-C2H2_4 PF13894.6 gi|284173009|ref|YP_003406390.1| - 1.2 10.2 3.0 16 6.6 0.2 2.6 2 1 0 2 2 2 0 C2H2-type zinc finger CDC45 PF02724.14 gi|284173009|ref|YP_003406390.1| - 2.9 6.1 6.6 2.7 6.2 6.6 1.1 1 0 0 1 1 1 0 CDC45-like protein TFIIS_C PF01096.18 gi|284173009|ref|YP_003406390.1| - 6.5 6.7 9.3 5.9 6.8 0.4 2.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) HalOD1 PF18545.1 gi|284173010|ref|YP_003406391.1| - 5.1e-14 52.3 0.0 5.5e-14 52.2 0.0 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 CorC_HlyC PF03471.17 gi|284173010|ref|YP_003406391.1| - 0.075 13.1 0.0 0.083 12.9 0.0 1.1 1 0 0 1 1 1 0 Transporter associated domain HalOD1 PF18545.1 gi|284173011|ref|YP_003406392.1| - 3.9e-21 75.1 0.1 5.8e-21 74.5 0.1 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 ACP_syn_III PF08545.10 gi|284173011|ref|YP_003406392.1| - 0.14 12.0 0.0 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DNA_primase_S PF01896.19 gi|284173014|ref|YP_003406395.1| - 0.00096 19.2 0.0 0.069 13.2 0.0 2.2 1 1 1 2 2 2 2 DNA primase small subunit Chlamy_scaf PF09675.10 gi|284173014|ref|YP_003406395.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.5 1 0 0 1 1 1 0 Chlamydia-phage Chp2 scaffold (Chlamy_scaf) TrwB_AAD_bind PF10412.9 gi|284173015|ref|YP_003406396.1| - 1.5e-07 30.7 0.0 2.4e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|284173015|ref|YP_003406396.1| - 4.3e-07 30.3 0.0 1.2e-06 28.8 0.0 1.8 1 0 0 1 1 1 1 Helicase HerA, central domain bPH_2 PF03703.14 gi|284173015|ref|YP_003406396.1| - 1.9e-05 24.8 0.0 4.1e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial PH domain FtsK_SpoIIIE PF01580.18 gi|284173015|ref|YP_003406396.1| - 0.0023 17.3 0.0 0.0049 16.3 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family TraG-D_C PF12696.7 gi|284173015|ref|YP_003406396.1| - 0.005 16.8 0.2 0.02 14.9 0.0 2.1 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG RNA_helicase PF00910.22 gi|284173015|ref|YP_003406396.1| - 0.022 15.1 0.0 0.064 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_25 PF13481.6 gi|284173015|ref|YP_003406396.1| - 0.1 12.2 0.2 2.4 7.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain Peptidase_M17 PF00883.21 gi|284173015|ref|YP_003406396.1| - 0.12 11.6 0.1 0.2 10.9 0.1 1.2 1 0 0 1 1 1 0 Cytosol aminopeptidase family, catalytic domain AAA_7 PF12775.7 gi|284173015|ref|YP_003406396.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF853 PF05872.12 gi|284173015|ref|YP_003406396.1| - 0.14 10.8 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|284173016|ref|YP_003406397.1| - 3.3e-08 33.9 0.1 2.3e-07 31.1 0.0 2.4 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|284173016|ref|YP_003406397.1| - 2e-05 23.7 0.1 0.0093 14.9 0.1 2.3 2 0 0 2 2 2 2 AAA-like domain DUF4332 PF14229.6 gi|284173016|ref|YP_003406397.1| - 6.9e-05 23.1 0.1 0.0027 17.9 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH_5 PF14520.6 gi|284173016|ref|YP_003406397.1| - 0.00021 21.8 0.1 0.00021 21.8 0.1 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain NTP_transf_5 PF14907.6 gi|284173016|ref|YP_003406397.1| - 0.0068 16.1 0.4 0.017 14.8 0.4 1.6 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase CagE_TrbE_VirB PF03135.14 gi|284173016|ref|YP_003406397.1| - 0.03 14.4 0.0 0.11 12.6 0.0 1.8 1 1 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system DNA_pol_lambd_f PF10391.9 gi|284173016|ref|YP_003406397.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda CCDC53 PF10152.9 gi|284173016|ref|YP_003406397.1| - 0.11 12.9 5.0 0.046 14.1 1.8 2.0 2 0 0 2 2 2 0 Subunit CCDC53 of WASH complex AAA PF00004.29 gi|284173019|ref|YP_003406400.1| - 1.5e-37 128.9 0.0 3.5e-37 127.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|284173019|ref|YP_003406400.1| - 3.4e-08 33.2 0.7 8.9e-08 31.8 0.7 1.7 1 0 0 1 1 1 1 AAA+ lid domain AAA_16 PF13191.6 gi|284173019|ref|YP_003406400.1| - 1.4e-07 32.0 4.2 4.1e-06 27.3 4.2 2.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|284173019|ref|YP_003406400.1| - 2.7e-06 27.4 0.0 8.2e-06 25.9 0.0 1.9 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|284173019|ref|YP_003406400.1| - 2.7e-06 27.2 0.0 9.3e-06 25.5 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|284173019|ref|YP_003406400.1| - 3.7e-05 23.9 0.5 0.00024 21.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|284173019|ref|YP_003406400.1| - 0.00029 21.1 1.0 0.21 11.9 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|284173019|ref|YP_003406400.1| - 0.00029 20.9 0.0 0.00057 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|284173019|ref|YP_003406400.1| - 0.00048 19.4 0.0 0.0016 17.7 0.0 1.7 1 1 1 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|284173019|ref|YP_003406400.1| - 0.00063 19.0 0.0 0.0011 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|284173019|ref|YP_003406400.1| - 0.002 18.5 0.0 0.004 17.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|284173019|ref|YP_003406400.1| - 0.0037 17.0 0.0 0.014 15.2 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|284173019|ref|YP_003406400.1| - 0.0038 17.0 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|284173019|ref|YP_003406400.1| - 0.0045 16.7 0.0 0.19 11.4 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|284173019|ref|YP_003406400.1| - 0.0087 16.6 0.0 0.017 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|284173019|ref|YP_003406400.1| - 0.011 15.7 0.1 0.18 11.7 0.0 2.3 1 1 1 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|284173019|ref|YP_003406400.1| - 0.012 15.2 1.1 2 8.0 0.0 2.4 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|284173019|ref|YP_003406400.1| - 0.013 15.7 0.0 0.044 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|284173019|ref|YP_003406400.1| - 0.014 14.8 0.0 0.027 13.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|284173019|ref|YP_003406400.1| - 0.018 14.1 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TsaE PF02367.17 gi|284173019|ref|YP_003406400.1| - 0.024 14.6 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|284173019|ref|YP_003406400.1| - 0.025 15.1 0.0 0.057 13.9 0.0 1.7 2 1 0 2 2 1 0 ABC transporter AAA_17 PF13207.6 gi|284173019|ref|YP_003406400.1| - 0.029 14.8 2.2 0.031 14.7 0.1 2.3 2 1 1 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|284173019|ref|YP_003406400.1| - 0.036 14.3 0.7 0.098 12.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|284173019|ref|YP_003406400.1| - 0.052 12.9 0.0 1.3 8.4 0.0 2.4 2 0 0 2 2 2 0 KaiC AAA_11 PF13086.6 gi|284173019|ref|YP_003406400.1| - 0.074 12.8 0.6 0.21 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|284173019|ref|YP_003406400.1| - 0.11 12.0 0.1 0.67 9.4 0.1 2.1 1 1 0 1 1 1 0 P-loop containing dynein motor region ATPase_2 PF01637.18 gi|284173019|ref|YP_003406400.1| - 0.21 11.5 0.1 5.1 6.9 0.1 2.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea TrbC PF04956.13 gi|284173022|ref|YP_003406403.1| - 6.8e-05 23.0 5.5 7.6e-05 22.9 5.5 1.2 1 0 0 1 1 1 1 TrbC/VIRB2 family Tetraspanin PF00335.20 gi|284173022|ref|YP_003406403.1| - 0.093 12.4 1.0 0.12 12.1 1.0 1.3 1 0 0 1 1 1 0 Tetraspanin family NVEALA PF14055.6 gi|284173022|ref|YP_003406403.1| - 0.11 12.4 0.9 0.43 10.6 0.2 2.0 2 0 0 2 2 2 0 NVEALA protein HNH PF01844.23 gi|284173023|ref|YP_003406404.1| - 1.8e-11 44.0 6.0 2.7e-11 43.4 6.0 1.3 1 0 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|284173023|ref|YP_003406404.1| - 1.4e-07 31.3 2.9 6.3e-07 29.2 2.8 1.8 1 1 1 2 2 2 1 HNH endonuclease Sortilin-Vps10 PF15902.5 gi|284173024|ref|YP_003406405.1| - 6.5e-15 54.9 0.0 5e-07 28.9 0.0 2.3 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|284173024|ref|YP_003406405.1| - 4.9e-11 40.9 17.4 0.014 15.3 0.1 6.3 6 0 0 6 6 6 4 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|284173024|ref|YP_003406405.1| - 2.5e-06 27.0 2.7 0.059 12.6 0.1 3.1 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR_6 PF15899.5 gi|284173024|ref|YP_003406405.1| - 4.8e-05 23.0 0.1 1.2 9.4 0.0 4.6 4 0 0 4 4 4 1 BNR-Asp box repeat BNR_2 PF13088.6 gi|284173024|ref|YP_003406405.1| - 0.0021 17.4 4.9 1.5 8.0 0.2 4.5 1 1 2 4 4 4 1 BNR repeat-like domain DUF4185 PF13810.6 gi|284173024|ref|YP_003406405.1| - 0.0025 17.1 3.8 9.3 5.4 0.9 3.8 2 2 1 3 3 3 3 Domain of unknown function (DUF4185) MqsR_toxin PF15723.5 gi|284173024|ref|YP_003406405.1| - 0.24 11.8 0.0 0.82 10.1 0.0 1.8 2 0 0 2 2 2 0 Motility quorum-sensing regulator, toxin of MqsA PQQ_3 PF13570.6 gi|284173024|ref|YP_003406405.1| - 0.53 10.9 4.4 34 5.1 0.1 4.1 4 0 0 4 4 4 0 PQQ-like domain BNR_3 PF13859.6 gi|284173024|ref|YP_003406405.1| - 0.57 9.4 2.3 69 2.6 0.0 3.5 4 0 0 4 4 4 0 BNR repeat-like domain Mo-co_dimer PF03404.16 gi|284173024|ref|YP_003406405.1| - 1.6 8.8 5.0 22 5.0 0.3 3.4 2 2 2 4 4 4 0 Mo-co oxidoreductase dimerisation domain Gram_pos_anchor PF00746.21 gi|284173028|ref|YP_003406409.1| - 0.099 12.6 0.2 0.099 12.6 0.2 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif SAPS PF04499.15 gi|284173028|ref|YP_003406409.1| - 0.86 8.3 12.8 1.2 7.8 12.8 1.2 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein AstE_AspA PF04952.14 gi|284173029|ref|YP_003406410.1| - 6.4e-15 55.0 0.0 1.2e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|284173029|ref|YP_003406410.1| - 9.3e-05 22.4 0.1 0.024 14.4 0.0 2.3 2 0 0 2 2 2 2 Zinc carboxypeptidase Peptidase_M99 PF17033.5 gi|284173029|ref|YP_003406410.1| - 0.0002 20.9 0.0 0.00034 20.2 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic DUF2119 PF09892.9 gi|284173029|ref|YP_003406410.1| - 0.065 12.6 0.0 0.28 10.6 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2119) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013746.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013746.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013746.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013746.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 14:55:10 2019 # [ok]