# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Yip1 PF04893.12 gi|284172525|ref|YP_003405907.1| - 2.3e-19 69.5 9.8 2.9e-19 69.2 6.8 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|284172525|ref|YP_003405907.1| - 4.2e-07 29.7 4.4 5.7e-07 29.3 3.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF4013 PF13197.1 gi|284172525|ref|YP_003405907.1| - 0.32 10.3 15.1 4 6.7 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) FAM70 PF14967.1 gi|284172525|ref|YP_003405907.1| - 0.62 9.2 2.5 0.58 9.3 0.6 1.7 2 0 0 2 2 2 0 FAM70 protein Polysacc_synt_C PF14667.1 gi|284172525|ref|YP_003405907.1| - 1.1 9.0 11.1 3.3 7.4 3.4 2.4 2 1 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain Aldo_ket_red PF00248.16 gi|284172526|ref|YP_003405908.1| - 2.5e-74 249.6 0.0 2.8e-74 249.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|284172527|ref|YP_003405909.1| - 1.5e-25 90.0 0.0 2.3e-25 89.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284172527|ref|YP_003405909.1| - 5.8e-05 22.8 0.0 0.00014 21.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|284172527|ref|YP_003405909.1| - 0.0071 16.6 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|284172527|ref|YP_003405909.1| - 0.094 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain MCPsignal PF00015.16 gi|284172528|ref|YP_003405910.1| - 2.2e-41 141.7 64.8 4.1e-39 134.3 23.9 3.9 1 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|284172528|ref|YP_003405910.1| - 1.2e-13 50.9 3.4 7.5e-12 45.2 0.2 7.1 7 1 1 8 8 8 2 HAMP domain IncA PF04156.9 gi|284172528|ref|YP_003405910.1| - 4.2e-06 26.4 41.2 0.002 17.7 3.5 6.1 3 2 1 5 5 5 2 IncA protein TMP_2 PF06791.8 gi|284172528|ref|YP_003405910.1| - 9.3e-05 22.1 38.0 0.0008 19.0 5.1 4.4 2 1 3 5 5 5 2 Prophage tail length tape measure protein DHC PF09626.5 gi|284172528|ref|YP_003405910.1| - 0.08 13.6 0.6 0.42 11.2 0.4 2.3 1 0 0 1 1 1 0 Dihaem cytochrome c PhageMin_Tail PF10145.4 gi|284172528|ref|YP_003405910.1| - 0.19 11.3 31.1 0.68 9.5 9.6 2.5 2 0 0 2 2 2 0 Phage-related minor tail protein DUF1890 PF09001.6 gi|284172528|ref|YP_003405910.1| - 0.64 10.0 6.1 1.6 8.7 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) Toxin_52 PF15605.1 gi|284172528|ref|YP_003405910.1| - 1.2 9.1 6.4 2.4 8.0 0.1 3.6 3 0 0 3 3 3 0 Putative toxin 52 DUF725 PF05267.7 gi|284172528|ref|YP_003405910.1| - 2.1 8.2 24.7 0.88 9.4 1.5 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF725) COG5 PF10392.4 gi|284172528|ref|YP_003405910.1| - 2.5 8.0 18.8 0.53 10.2 0.5 4.4 2 1 1 4 4 4 0 Golgi transport complex subunit 5 Vps53_N PF04100.7 gi|284172528|ref|YP_003405910.1| - 2.6 6.7 27.6 0.013 14.3 5.4 3.1 3 1 0 3 3 3 0 Vps53-like, N-terminal DUF1664 PF07889.7 gi|284172528|ref|YP_003405910.1| - 6.7 6.5 34.3 0.48 10.2 1.8 5.9 1 1 4 6 6 6 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|284172528|ref|YP_003405910.1| - 7 6.4 45.1 1.4 8.6 3.6 5.7 2 2 4 6 6 6 0 Laminin Domain II SNARE PF05739.14 gi|284172528|ref|YP_003405910.1| - 7.7 6.2 23.8 1.5 8.5 0.7 6.5 5 2 0 5 5 5 0 SNARE domain Lactonase PF10282.4 gi|284172529|ref|YP_003405911.1| - 9.4e-106 353.7 0.0 1.1e-105 353.5 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|284172529|ref|YP_003405911.1| - 1.1e-06 28.2 0.0 0.011 15.1 0.0 3.1 2 1 1 3 3 3 3 SMP-30/Gluconolaconase/LRE-like region DUF1513 PF07433.6 gi|284172529|ref|YP_003405911.1| - 0.0041 16.0 0.0 1.2 7.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1513) NHL PF01436.16 gi|284172529|ref|YP_003405911.1| - 0.11 12.5 2.9 13 5.9 0.0 3.2 3 0 0 3 3 3 0 NHL repeat TonB_C PF03544.9 gi|284172529|ref|YP_003405911.1| - 0.13 12.4 0.0 2.6 8.2 0.0 2.9 3 0 0 3 3 3 0 Gram-negative bacterial TonB protein C-terminal GFO_IDH_MocA PF01408.17 gi|284172530|ref|YP_003405912.1| - 1.3e-24 86.9 0.0 2.4e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284172530|ref|YP_003405912.1| - 1.5e-16 60.2 0.2 3.1e-16 59.1 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|284172530|ref|YP_003405912.1| - 3.2e-05 24.2 0.1 5.8e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|284172530|ref|YP_003405912.1| - 0.0065 16.8 0.5 0.18 12.1 0.3 2.6 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain ox_reductase_C PF08635.5 gi|284172530|ref|YP_003405912.1| - 0.034 13.5 0.1 0.26 10.7 0.0 2.0 1 1 1 2 2 2 0 Putative oxidoreductase C terminal DUF296 PF03479.10 gi|284172531|ref|YP_003405913.1| - 3.4e-15 55.7 0.0 4e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) DUF3481 PF11980.3 gi|284172532|ref|YP_003405914.1| - 0.059 13.2 1.8 0.075 12.8 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3481) SKG6 PF08693.5 gi|284172532|ref|YP_003405914.1| - 2.7 7.3 5.5 0.41 9.9 0.7 2.0 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF1656 PF07869.7 gi|284172532|ref|YP_003405914.1| - 9.6 6.0 10.7 8.1 6.3 3.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) Aldedh PF00171.17 gi|284172533|ref|YP_003405915.1| - 2.6e-165 550.2 3.3 2.9e-165 550.0 2.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284172533|ref|YP_003405915.1| - 0.1 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) Lactamase_B_2 PF12706.2 gi|284172534|ref|YP_003405916.1| - 2.7e-15 56.4 0.5 3.8e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|284172534|ref|YP_003405916.1| - 1e-12 48.0 0.0 1.3e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|284172534|ref|YP_003405916.1| - 0.11 12.1 3.6 0.77 9.3 0.3 2.5 2 1 0 2 2 2 0 Metallo-beta-lactamase superfamily Epimerase PF01370.16 gi|284172535|ref|YP_003405917.1| - 1.2e-22 80.5 0.1 2.5e-22 79.4 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|284172535|ref|YP_003405917.1| - 1.6e-14 53.3 0.0 2e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|284172535|ref|YP_003405917.1| - 2e-11 43.3 0.0 4e-10 39.0 0.0 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|284172535|ref|YP_003405917.1| - 1.6e-08 33.7 0.0 2.1e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|284172535|ref|YP_003405917.1| - 2.5e-08 33.1 0.0 3.8e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|284172535|ref|YP_003405917.1| - 2.6e-08 34.1 0.0 3.9e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|284172535|ref|YP_003405917.1| - 0.00023 20.2 0.0 0.00036 19.6 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|284172535|ref|YP_003405917.1| - 0.00037 20.4 0.0 0.0022 17.9 0.0 2.2 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|284172535|ref|YP_003405917.1| - 0.011 15.3 0.0 0.099 12.2 0.0 2.2 1 1 0 1 1 1 0 KR domain DapB_N PF01113.15 gi|284172535|ref|YP_003405917.1| - 0.017 15.0 0.0 0.19 11.6 0.0 2.2 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.13 gi|284172535|ref|YP_003405917.1| - 0.16 12.0 0.0 0.29 11.1 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Usp PF00582.21 gi|284172536|ref|YP_003405918.1| - 1.9e-13 50.8 0.1 3.6e-13 49.9 0.1 1.4 1 1 0 1 1 1 1 Universal stress protein family MR_MLE_C PF13378.1 gi|284172537|ref|YP_003405919.1| - 1.8e-25 89.0 0.0 5.8e-25 87.4 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|284172537|ref|YP_003405919.1| - 9.1e-19 67.7 0.2 4.1e-18 65.6 0.1 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|284172537|ref|YP_003405919.1| - 1.6e-14 53.8 0.0 9.3e-14 51.4 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DHDPS PF00701.17 gi|284172538|ref|YP_003405920.1| - 5.2e-41 140.1 0.0 6.6e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Chlor_dismutase PF06778.7 gi|284172538|ref|YP_003405920.1| - 0.052 13.2 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Chlorite dismutase MR_MLE_C PF13378.1 gi|284172539|ref|YP_003405921.1| - 7.6e-20 70.9 0.4 3.7e-19 68.7 0.1 2.3 2 1 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|284172539|ref|YP_003405921.1| - 1.3e-12 47.6 0.0 2.3e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|284172539|ref|YP_003405921.1| - 9.6e-10 38.8 3.6 1.2e-09 38.5 0.7 2.5 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Pectinesterase PF01095.14 gi|284172540|ref|YP_003405922.1| - 2.7e-74 249.4 0.0 3.4e-74 249.0 0.0 1.1 1 0 0 1 1 1 1 Pectinesterase Pentapeptide_3 PF13576.1 gi|284172540|ref|YP_003405922.1| - 0.097 12.5 1.7 2.4 8.1 0.2 3.5 2 1 1 3 3 3 0 Pentapeptide repeats (9 copies) ThuA PF06283.6 gi|284172541|ref|YP_003405923.1| - 7.5e-45 153.2 0.1 8.5e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation RicinB_lectin_2 PF14200.1 gi|284172542|ref|YP_003405924.1| - 6.3e-42 142.2 10.7 6.3e-22 77.9 0.6 2.4 1 1 1 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.17 gi|284172542|ref|YP_003405924.1| - 3.1e-16 59.5 4.2 3.1e-16 59.5 2.9 1.9 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain Pec_lyase_C PF00544.14 gi|284172542|ref|YP_003405924.1| - 5.2e-06 26.0 0.3 1e-05 25.0 0.2 1.5 1 0 0 1 1 1 1 Pectate lyase MR_MLE_C PF13378.1 gi|284172543|ref|YP_003405925.1| - 2.5e-34 117.5 0.4 8.1e-34 115.9 0.0 2.0 2 1 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|284172543|ref|YP_003405925.1| - 2.7e-21 75.7 0.0 7e-21 74.3 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|284172543|ref|YP_003405925.1| - 4.3e-15 55.9 0.1 1.4e-14 54.3 0.1 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ThuA PF06283.6 gi|284172544|ref|YP_003405926.1| - 3.5e-41 141.3 0.0 3.9e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation GFO_IDH_MocA PF01408.17 gi|284172545|ref|YP_003405927.1| - 6.7e-19 68.5 0.0 1.1e-18 67.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284172545|ref|YP_003405927.1| - 0.00053 19.7 0.0 0.0015 18.3 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_3 PF03447.11 gi|284172545|ref|YP_003405927.1| - 0.00085 19.7 0.1 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284172545|ref|YP_003405927.1| - 0.0023 18.3 0.0 0.0047 17.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|284172545|ref|YP_003405927.1| - 0.081 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_luciferase PF00296.15 gi|284172546|ref|YP_003405928.1| - 5.6e-53 180.0 0.0 6.9e-53 179.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3420 PF11900.3 gi|284172546|ref|YP_003405928.1| - 0.064 13.3 0.1 0.15 12.2 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3420) Lipase_GDSL_2 PF13472.1 gi|284172547|ref|YP_003405929.1| - 3.9e-19 69.4 0.0 4.5e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|284172547|ref|YP_003405929.1| - 1.5e-11 44.5 0.0 1.8e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Lipase_GDSL_3 PF14606.1 gi|284172547|ref|YP_003405929.1| - 0.088 12.5 0.0 2.2 8.0 0.0 2.1 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family adh_short PF00106.20 gi|284172548|ref|YP_003405930.1| - 3.9e-38 130.9 4.6 5.1e-38 130.6 3.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284172548|ref|YP_003405930.1| - 2.9e-27 95.9 0.0 3.4e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284172548|ref|YP_003405930.1| - 2.2e-16 60.0 2.6 3.2e-16 59.5 1.8 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284172548|ref|YP_003405930.1| - 7.6e-05 22.2 0.2 0.00012 21.6 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.12 gi|284172548|ref|YP_003405930.1| - 0.00088 19.6 1.6 0.0021 18.4 0.3 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|284172548|ref|YP_003405930.1| - 0.072 13.0 1.7 0.076 13.0 0.5 1.6 2 0 0 2 2 2 0 NADH(P)-binding NifZ PF04319.8 gi|284172548|ref|YP_003405930.1| - 0.14 11.5 1.6 0.21 10.9 0.2 2.0 3 0 0 3 3 3 0 NifZ domain NmrA PF05368.8 gi|284172548|ref|YP_003405930.1| - 0.14 11.4 1.6 0.23 10.6 1.1 1.4 1 0 0 1 1 1 0 NmrA-like family SBP_bac_5 PF00496.17 gi|284172549|ref|YP_003405931.1| - 1.5e-33 116.1 0.9 2.7e-33 115.3 0.6 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284172549|ref|YP_003405931.1| - 0.1 12.6 0.9 0.17 11.9 0.7 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.17 gi|284172550|ref|YP_003405932.1| - 3e-34 118.4 0.6 5.1e-34 117.6 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284172550|ref|YP_003405932.1| - 0.012 15.5 0.6 0.021 14.7 0.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.17 gi|284172551|ref|YP_003405933.1| - 1.9e-40 138.8 3.7 2.8e-40 138.2 2.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284172551|ref|YP_003405933.1| - 0.0071 16.2 0.3 0.011 15.6 0.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence KASH PF10541.4 gi|284172552|ref|YP_003405934.1| - 0.8 9.6 2.9 0.61 9.9 0.3 1.8 2 0 0 2 2 2 0 Nuclear envelope localisation domain ABC2_membrane_3 PF12698.2 gi|284172552|ref|YP_003405934.1| - 0.87 8.5 7.3 0.87 8.5 5.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3975 PF13126.1 gi|284172552|ref|YP_003405934.1| - 0.89 9.7 6.5 2.7 8.2 4.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3975) CRPA PF05745.6 gi|284172552|ref|YP_003405934.1| - 0.97 9.2 6.0 1.1 8.9 4.2 1.0 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) SdpI PF13630.1 gi|284172552|ref|YP_003405934.1| - 8.4 6.1 6.9 10 5.8 4.8 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family BPD_transp_1 PF00528.17 gi|284172553|ref|YP_003405935.1| - 4.1e-31 107.9 12.2 4.1e-31 107.9 8.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2956 PF11169.3 gi|284172553|ref|YP_003405935.1| - 0.028 14.3 0.3 0.061 13.2 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) Scs3p PF10261.4 gi|284172553|ref|YP_003405935.1| - 0.078 12.0 0.7 0.16 10.9 0.1 1.9 2 0 0 2 2 2 0 Inositol phospholipid synthesis and fat-storage-inducing TM Renin_r PF07850.9 gi|284172553|ref|YP_003405935.1| - 0.15 12.4 0.4 1 9.7 0.0 2.3 2 0 0 2 2 2 0 Renin receptor-like protein DUF3464 PF11947.3 gi|284172553|ref|YP_003405935.1| - 0.22 10.9 2.5 0.59 9.5 1.7 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) MgtE PF01769.11 gi|284172553|ref|YP_003405935.1| - 3.2 8.0 13.3 0.049 13.9 0.7 3.4 3 2 0 3 3 3 0 Divalent cation transporter BPD_transp_1 PF00528.17 gi|284172554|ref|YP_003405936.1| - 7e-26 90.8 8.8 7e-26 90.8 6.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284172555|ref|YP_003405937.1| - 2.6e-50 170.2 0.0 2.2e-27 96.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|284172555|ref|YP_003405937.1| - 4.4e-36 123.0 6.8 2.6e-18 66.1 0.2 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284172555|ref|YP_003405937.1| - 9.5e-22 78.2 5.1 1.1e-09 38.7 0.5 4.1 2 2 1 4 4 4 3 AAA domain SMC_N PF02463.14 gi|284172555|ref|YP_003405937.1| - 4.4e-07 29.3 1.7 0.017 14.3 0.0 4.1 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284172555|ref|YP_003405937.1| - 4.9e-07 29.9 2.1 0.061 13.4 0.3 3.5 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|284172555|ref|YP_003405937.1| - 5.7e-07 29.6 0.0 0.015 15.2 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|284172555|ref|YP_003405937.1| - 2e-06 27.2 0.1 0.062 12.8 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|284172555|ref|YP_003405937.1| - 2.6e-06 27.0 0.0 0.054 12.9 0.0 3.0 3 0 0 3 3 3 2 AAA domain NACHT PF05729.7 gi|284172555|ref|YP_003405937.1| - 2.2e-05 24.1 0.7 0.21 11.2 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_15 PF13175.1 gi|284172555|ref|YP_003405937.1| - 8.8e-05 21.7 0.2 0.072 12.1 0.1 3.2 4 0 0 4 4 3 1 AAA ATPase domain DUF258 PF03193.11 gi|284172555|ref|YP_003405937.1| - 0.0001 21.5 0.0 0.12 11.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|284172555|ref|YP_003405937.1| - 0.00013 21.5 0.2 0.06 12.7 0.0 2.9 3 1 0 3 3 3 1 AAA-like domain NB-ARC PF00931.17 gi|284172555|ref|YP_003405937.1| - 0.00015 20.7 0.1 0.1 11.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_23 PF13476.1 gi|284172555|ref|YP_003405937.1| - 0.00019 21.8 0.0 0.81 9.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|284172555|ref|YP_003405937.1| - 0.00028 20.3 0.0 0.47 9.8 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|284172555|ref|YP_003405937.1| - 0.00045 20.3 0.1 1.6 8.9 0.0 2.7 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.11 gi|284172555|ref|YP_003405937.1| - 0.00048 19.4 0.0 0.8 8.8 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein AAA_5 PF07728.9 gi|284172555|ref|YP_003405937.1| - 0.00079 19.1 1.3 1.4 8.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|284172555|ref|YP_003405937.1| - 0.0008 18.5 0.0 0.64 9.0 0.0 2.7 3 0 0 3 3 3 1 Zeta toxin AAA_18 PF13238.1 gi|284172555|ref|YP_003405937.1| - 0.0013 19.0 0.1 2.1 8.6 0.1 2.8 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|284172555|ref|YP_003405937.1| - 0.0013 17.4 0.3 0.088 11.3 0.0 3.2 4 0 0 4 4 4 1 Predicted ATPase of the ABC class KaiC PF06745.8 gi|284172555|ref|YP_003405937.1| - 0.0013 17.9 0.0 0.45 9.6 0.0 2.6 2 0 0 2 2 2 1 KaiC AAA_33 PF13671.1 gi|284172555|ref|YP_003405937.1| - 0.0014 18.4 0.1 0.65 9.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|284172555|ref|YP_003405937.1| - 0.0026 17.4 0.8 0.85 9.3 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|284172555|ref|YP_003405937.1| - 0.0027 18.5 3.5 0.6 10.9 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|284172555|ref|YP_003405937.1| - 0.0069 16.5 0.6 2 8.5 0.1 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|284172555|ref|YP_003405937.1| - 0.007 15.9 0.2 0.24 10.9 0.0 2.7 3 0 0 3 3 3 1 AAA domain T2SE PF00437.15 gi|284172555|ref|YP_003405937.1| - 0.0089 14.9 0.1 2.9 6.7 0.0 2.8 3 0 0 3 3 3 1 Type II/IV secretion system protein Sigma54_activat PF00158.21 gi|284172555|ref|YP_003405937.1| - 0.011 15.1 0.0 3.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.12 gi|284172555|ref|YP_003405937.1| - 0.011 15.5 0.0 0.035 13.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF87 UPF0079 PF02367.12 gi|284172555|ref|YP_003405937.1| - 0.015 14.9 0.3 0.53 9.9 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Miro PF08477.8 gi|284172555|ref|YP_003405937.1| - 0.02 15.3 0.4 2.3 8.7 0.1 2.5 2 0 0 2 2 2 0 Miro-like protein FtsK_SpoIIIE PF01580.13 gi|284172555|ref|YP_003405937.1| - 0.024 14.1 0.0 0.49 9.8 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|284172555|ref|YP_003405937.1| - 0.025 13.7 0.1 2.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PRK PF00485.13 gi|284172555|ref|YP_003405937.1| - 0.05 13.1 0.2 11 5.5 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family PduV-EutP PF10662.4 gi|284172555|ref|YP_003405937.1| - 0.06 12.8 0.2 0.45 10.0 0.1 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|284172555|ref|YP_003405937.1| - 0.064 12.8 0.0 4.4 6.8 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|284172555|ref|YP_003405937.1| - 0.071 12.8 0.2 9.3 6.0 0.1 2.7 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|284172555|ref|YP_003405937.1| - 0.085 12.5 0.4 4.4 6.9 0.0 2.5 3 0 0 3 3 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|284172555|ref|YP_003405937.1| - 0.091 12.7 0.9 4.2 7.3 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase Sigma54_activ_2 PF14532.1 gi|284172555|ref|YP_003405937.1| - 0.1 12.6 0.5 24 4.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-54 interaction domain Hpr_kinase_C PF07475.7 gi|284172555|ref|YP_003405937.1| - 0.21 10.8 2.7 1.7 7.9 0.5 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain SbcCD_C PF13558.1 gi|284172555|ref|YP_003405937.1| - 0.25 11.3 1.6 29 4.6 0.2 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|284172555|ref|YP_003405937.1| - 0.56 9.8 2.1 32 4.1 0.3 3.4 4 0 0 4 4 4 0 NTPase GD_AH_C PF04295.8 gi|284172556|ref|YP_003405938.1| - 1.5e-57 195.1 1.2 1.1e-37 129.6 0.4 2.1 2 0 0 2 2 2 2 D-galactarate dehydratase / Altronate hydrolase, C terminus CoA_binding PF02629.14 gi|284172556|ref|YP_003405938.1| - 0.018 15.5 0.2 0.79 10.2 0.0 2.4 2 0 0 2 2 2 0 CoA binding domain SAF PF08666.7 gi|284172557|ref|YP_003405939.1| - 1e-14 54.6 0.2 1.5e-14 54.0 0.1 1.3 1 0 0 1 1 1 1 SAF domain GD_AH_C PF04295.8 gi|284172558|ref|YP_003405940.1| - 4.1e-136 453.7 3.1 4.9e-136 453.5 2.2 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus DUF3729 PF12526.3 gi|284172558|ref|YP_003405940.1| - 0.28 12.5 1.2 0.71 11.2 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3729) DHDPS PF00701.17 gi|284172559|ref|YP_003405941.1| - 8.3e-37 126.3 0.0 9.9e-37 126.0 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF1083 PF06452.6 gi|284172560|ref|YP_003405942.1| - 1.1e-05 25.4 0.3 0.00019 21.3 0.1 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF1083) TPP_enzyme_C PF02775.16 gi|284172561|ref|YP_003405943.1| - 2.4e-39 134.3 0.0 3.9e-39 133.6 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|284172561|ref|YP_003405943.1| - 9.6e-37 126.0 0.0 5.3e-33 113.9 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|284172561|ref|YP_003405943.1| - 1.4e-30 105.8 0.2 3e-30 104.7 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Alpha-L-AF_C PF06964.7 gi|284172562|ref|YP_003405944.1| - 7.8e-13 48.5 0.1 2.6e-12 46.8 0.0 1.8 2 0 0 2 2 2 1 Alpha-L-arabinofuranosidase C-terminus YibE_F PF07907.6 gi|284172563|ref|YP_003405945.1| - 0.053 12.7 1.0 0.061 12.4 0.7 1.0 1 0 0 1 1 1 0 YibE/F-like protein DsbB PF02600.11 gi|284172563|ref|YP_003405945.1| - 0.083 12.6 0.6 0.1 12.3 0.4 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB ABC_tran PF00005.22 gi|284172564|ref|YP_003405946.1| - 4e-31 108.1 0.0 5.9e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284172564|ref|YP_003405946.1| - 1.8e-18 66.6 0.4 3.8e-18 65.5 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284172564|ref|YP_003405946.1| - 7.3e-10 39.2 0.3 9.6e-07 29.0 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284172564|ref|YP_003405946.1| - 0.0017 18.5 0.4 0.37 10.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|284172564|ref|YP_003405946.1| - 0.0047 16.4 0.1 0.0085 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|284172564|ref|YP_003405946.1| - 0.0057 15.9 0.6 0.13 11.4 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284172564|ref|YP_003405946.1| - 0.024 13.8 0.1 0.041 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|284172564|ref|YP_003405946.1| - 0.024 13.4 0.0 0.043 12.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.1 gi|284172564|ref|YP_003405946.1| - 0.032 14.2 0.1 0.077 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|284172564|ref|YP_003405946.1| - 0.043 13.2 0.0 0.079 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|284172564|ref|YP_003405946.1| - 0.045 12.8 0.0 0.085 11.9 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_10 PF12846.2 gi|284172564|ref|YP_003405946.1| - 0.059 12.8 0.3 1.3 8.3 0.1 2.1 1 1 0 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|284172564|ref|YP_003405946.1| - 0.1 11.1 0.2 5.4 5.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC_tran PF00005.22 gi|284172565|ref|YP_003405947.1| - 1.6e-22 80.2 0.0 2.3e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284172565|ref|YP_003405947.1| - 3.9e-18 65.5 0.8 9.5e-18 64.3 0.5 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284172565|ref|YP_003405947.1| - 2.2e-10 41.0 1.7 4.7e-09 36.6 0.2 2.1 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284172565|ref|YP_003405947.1| - 2.4e-05 23.8 0.0 0.00019 20.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|284172565|ref|YP_003405947.1| - 0.00014 21.1 0.9 0.029 13.5 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|284172565|ref|YP_003405947.1| - 0.00019 21.5 0.9 0.0051 16.9 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|284172565|ref|YP_003405947.1| - 0.00069 18.7 0.0 0.002 17.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|284172565|ref|YP_003405947.1| - 0.0015 17.2 0.1 0.0046 15.5 0.0 1.8 2 1 0 2 2 2 1 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.13 gi|284172565|ref|YP_003405947.1| - 0.013 14.9 0.0 0.032 13.7 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|284172565|ref|YP_003405947.1| - 0.014 15.1 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|284172565|ref|YP_003405947.1| - 0.022 14.7 0.3 0.06 13.3 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|284172565|ref|YP_003405947.1| - 0.023 14.1 0.2 0.064 12.6 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|284172565|ref|YP_003405947.1| - 0.025 14.1 0.0 0.046 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|284172565|ref|YP_003405947.1| - 0.034 13.8 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|284172565|ref|YP_003405947.1| - 0.05 12.3 0.0 0.079 11.7 0.0 1.2 1 0 0 1 1 1 0 ArgK protein IstB_IS21 PF01695.12 gi|284172565|ref|YP_003405947.1| - 0.058 12.8 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|284172565|ref|YP_003405947.1| - 0.094 12.8 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|284172566|ref|YP_003405948.1| - 5.1e-23 81.5 13.2 5.1e-23 81.5 9.1 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF21 PF01595.15 gi|284172566|ref|YP_003405948.1| - 3.5 6.8 6.4 0.55 9.4 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF21 BPD_transp_1 PF00528.17 gi|284172567|ref|YP_003405949.1| - 8.9e-39 132.9 13.2 8.9e-39 132.9 9.2 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|284172568|ref|YP_003405950.1| - 7.4e-34 117.1 3.8 1.1e-33 116.5 2.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MatE PF01554.13 gi|284172570|ref|YP_003405952.1| - 3.4e-48 163.3 24.7 1.5e-25 89.7 5.7 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|284172570|ref|YP_003405952.1| - 2.7e-10 40.2 11.7 5.8e-10 39.1 3.3 3.9 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|284172570|ref|YP_003405952.1| - 1.7e-09 36.6 10.5 1.5e-08 33.5 1.8 2.6 2 1 1 3 3 3 3 MviN-like protein Usp PF00582.21 gi|284172571|ref|YP_003405953.1| - 2.5e-11 43.9 0.5 8.2e-11 42.2 0.3 1.7 1 1 0 1 1 1 1 Universal stress protein family Alpha-L-AF_C PF06964.7 gi|284172572|ref|YP_003405954.1| - 1e-30 106.8 0.1 1.4e-30 106.3 0.1 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus ABC_tran PF00005.22 gi|284172573|ref|YP_003405955.1| - 1.4e-36 125.8 0.0 2.2e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|284172573|ref|YP_003405955.1| - 7.7e-33 114.0 3.2 9.7e-33 113.7 2.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.1 gi|284172573|ref|YP_003405955.1| - 1.9e-06 27.9 0.0 4.4e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|284172573|ref|YP_003405955.1| - 9.3e-06 25.0 0.0 0.00015 21.0 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284172573|ref|YP_003405955.1| - 0.00013 21.2 0.0 0.00023 20.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|284172573|ref|YP_003405955.1| - 0.00045 20.2 0.0 0.25 11.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284172573|ref|YP_003405955.1| - 0.0011 19.8 0.0 0.0023 18.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284172573|ref|YP_003405955.1| - 0.0011 18.4 0.0 0.0032 16.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|284172573|ref|YP_003405955.1| - 0.0069 15.5 0.0 0.012 14.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.1 gi|284172573|ref|YP_003405955.1| - 0.0072 15.9 1.0 0.033 13.7 0.4 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284172573|ref|YP_003405955.1| - 0.0074 16.4 0.3 0.048 13.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|284172573|ref|YP_003405955.1| - 0.0087 15.7 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|284172573|ref|YP_003405955.1| - 0.011 16.0 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|284172573|ref|YP_003405955.1| - 0.018 14.9 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|284172573|ref|YP_003405955.1| - 0.046 13.1 0.0 0.09 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|284172573|ref|YP_003405955.1| - 0.054 13.8 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|284172573|ref|YP_003405955.1| - 0.055 13.4 0.0 0.32 10.9 0.0 2.3 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|284172573|ref|YP_003405955.1| - 0.059 12.7 0.0 0.16 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain Hum_adeno_E3A PF05393.6 gi|284172573|ref|YP_003405955.1| - 0.073 12.7 0.0 0.62 9.7 0.0 2.4 2 0 0 2 2 2 0 Human adenovirus early E3A glycoprotein AAA PF00004.24 gi|284172573|ref|YP_003405955.1| - 0.09 12.9 0.0 0.31 11.2 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|284172573|ref|YP_003405955.1| - 0.13 11.9 0.2 0.93 9.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AP_endonuc_2 PF01261.19 gi|284172574|ref|YP_003405956.1| - 3.4e-35 121.2 1.6 5.2e-35 120.6 1.1 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF1680 PF07944.7 gi|284172576|ref|YP_003405958.1| - 5.7e-169 562.7 0.0 6.5e-169 562.5 0.0 1.0 1 0 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) IclR PF01614.13 gi|284172577|ref|YP_003405959.1| - 1.3e-34 118.7 0.0 1.9e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172577|ref|YP_003405959.1| - 1.7e-12 46.7 0.0 6.9e-12 44.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284172577|ref|YP_003405959.1| - 9e-05 21.7 0.0 0.00016 20.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|284172577|ref|YP_003405959.1| - 0.00032 20.4 0.0 0.0009 18.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284172577|ref|YP_003405959.1| - 0.00073 19.1 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|284172577|ref|YP_003405959.1| - 0.00095 18.8 0.1 0.0037 16.9 0.0 2.1 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284172577|ref|YP_003405959.1| - 0.0012 18.5 0.0 0.0029 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|284172577|ref|YP_003405959.1| - 0.0071 15.9 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family MotA_activ PF09114.5 gi|284172577|ref|YP_003405959.1| - 0.011 15.5 0.1 0.033 13.9 0.0 1.7 2 0 0 2 2 2 0 Transcription factor MotA, activation domain HTH_27 PF13463.1 gi|284172577|ref|YP_003405959.1| - 0.014 15.7 0.0 0.037 14.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain UPF0122 PF04297.9 gi|284172577|ref|YP_003405959.1| - 0.039 13.9 0.4 0.099 12.6 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_10 PF04967.7 gi|284172577|ref|YP_003405959.1| - 0.043 13.4 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_23 PF13384.1 gi|284172577|ref|YP_003405959.1| - 0.075 12.7 0.0 0.2 11.3 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain SGL PF08450.7 gi|284172578|ref|YP_003405960.1| - 2.3e-69 233.4 0.2 2.8e-69 233.2 0.2 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Str_synth PF03088.11 gi|284172578|ref|YP_003405960.1| - 0.0091 16.0 0.0 0.29 11.1 0.0 2.8 3 0 0 3 3 3 1 Strictosidine synthase Kelch_3 PF13415.1 gi|284172578|ref|YP_003405960.1| - 0.059 13.5 0.1 3.4 7.9 0.0 2.9 2 0 0 2 2 2 0 Galactose oxidase, central domain adh_short_C2 PF13561.1 gi|284172579|ref|YP_003405961.1| - 3.5e-38 131.7 0.3 4.1e-38 131.5 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|284172579|ref|YP_003405961.1| - 2.2e-34 118.7 3.9 2.7e-34 118.4 2.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284172579|ref|YP_003405961.1| - 1.7e-17 63.6 1.4 2.2e-17 63.2 1.0 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|284172579|ref|YP_003405961.1| - 1.4e-07 31.6 3.3 2.2e-07 31.0 2.3 1.2 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|284172579|ref|YP_003405961.1| - 5e-07 30.0 0.6 1.4e-06 28.6 0.4 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Eno-Rase_NADH_b PF12242.3 gi|284172579|ref|YP_003405961.1| - 0.0011 18.7 0.4 0.0024 17.6 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase THF_DHG_CYH_C PF02882.14 gi|284172579|ref|YP_003405961.1| - 0.0011 18.0 0.2 0.013 14.5 0.0 2.4 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.16 gi|284172579|ref|YP_003405961.1| - 0.0026 17.2 0.5 0.0036 16.7 0.3 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|284172579|ref|YP_003405961.1| - 0.0086 15.3 0.8 0.012 14.9 0.6 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|284172579|ref|YP_003405961.1| - 0.012 14.7 0.1 0.024 13.7 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|284172579|ref|YP_003405961.1| - 0.016 14.8 1.9 0.029 14.0 1.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284172579|ref|YP_003405961.1| - 0.072 13.0 2.2 0.097 12.6 0.7 1.8 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.11 gi|284172579|ref|YP_003405961.1| - 0.075 12.4 0.2 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|284172579|ref|YP_003405961.1| - 0.085 12.9 0.5 0.16 12.0 0.3 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ADH_zinc_N PF00107.21 gi|284172579|ref|YP_003405961.1| - 0.74 9.3 4.0 1.2 8.6 2.1 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Metal_resist PF13801.1 gi|284172580|ref|YP_003405962.1| - 0.21 11.5 0.8 4.4 7.3 0.0 2.0 2 0 0 2 2 2 0 Heavy-metal resistance ADH_N PF08240.7 gi|284172581|ref|YP_003405963.1| - 8e-31 106.0 0.5 1.9e-30 104.8 0.4 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284172581|ref|YP_003405963.1| - 5e-19 68.1 0.0 7.9e-19 67.4 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|284172581|ref|YP_003405963.1| - 5.9e-08 33.6 0.0 1.6e-07 32.2 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase MR_MLE_C PF13378.1 gi|284172582|ref|YP_003405964.1| - 5.3e-29 100.4 0.0 1.3e-28 99.1 0.0 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|284172582|ref|YP_003405964.1| - 6.7e-14 52.1 0.9 2.8e-13 50.1 0.0 2.5 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|284172582|ref|YP_003405964.1| - 2.6e-12 46.7 0.0 4.3e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GntP_permease PF02447.11 gi|284172583|ref|YP_003405965.1| - 4.7e-98 328.5 27.9 5.5e-98 328.3 19.3 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.11 gi|284172583|ref|YP_003405965.1| - 2.5e-07 29.6 21.2 4.4e-07 28.8 14.7 1.4 1 0 0 1 1 1 1 Citrate transporter Aldedh PF00171.17 gi|284172584|ref|YP_003405966.1| - 5.4e-167 555.8 0.7 6.1e-167 555.6 0.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284172584|ref|YP_003405966.1| - 0.0013 17.5 0.0 0.0021 16.8 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) FAA_hydrolase PF01557.13 gi|284172585|ref|YP_003405967.1| - 1.4e-31 109.6 0.0 1.8e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family PEP-utilisers_N PF05524.8 gi|284172585|ref|YP_003405967.1| - 0.03 14.1 0.2 0.044 13.5 0.1 1.2 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal Glyco_hydro_4 PF02056.11 gi|284172586|ref|YP_003405968.1| - 2.5e-56 189.8 0.0 3.3e-56 189.4 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|284172586|ref|YP_003405968.1| - 7.1e-39 133.9 0.0 3.8e-38 131.5 0.0 2.1 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain ADH_zinc_N PF00107.21 gi|284172586|ref|YP_003405968.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF624 PF04854.9 gi|284172587|ref|YP_003405969.1| - 2.6e-06 27.1 1.2 2.6e-06 27.1 0.8 3.0 2 2 0 2 2 2 1 Protein of unknown function, DUF624 DUF975 PF06161.6 gi|284172587|ref|YP_003405969.1| - 0.057 13.1 4.3 0.057 13.1 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF975) BNR_2 PF13088.1 gi|284172588|ref|YP_003405970.1| - 9.5e-11 41.4 1.3 1.4e-05 24.5 0.0 2.9 1 1 1 3 3 3 3 BNR repeat-like domain BNR PF02012.15 gi|284172588|ref|YP_003405970.1| - 0.00047 19.5 22.2 0.019 14.6 0.6 4.6 5 0 0 5 5 5 3 BNR/Asp-box repeat GspH PF12019.3 gi|284172588|ref|YP_003405970.1| - 0.0068 16.5 2.0 0.045 13.9 1.4 2.4 1 1 0 1 1 1 1 Type II transport protein GspH BNR_3 PF13859.1 gi|284172588|ref|YP_003405970.1| - 0.017 14.1 0.0 1 8.3 0.0 2.7 3 0 0 3 3 3 0 BNR repeat-like domain ABC_tran PF00005.22 gi|284172589|ref|YP_003405971.1| - 2.8e-32 111.8 0.0 6e-32 110.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284172589|ref|YP_003405971.1| - 1.2e-10 41.8 0.0 0.00015 21.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|284172589|ref|YP_003405971.1| - 1.3e-09 37.9 0.0 7.3e-09 35.5 0.0 2.3 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|284172589|ref|YP_003405971.1| - 3.5e-05 23.1 0.1 7.1e-05 22.1 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|284172589|ref|YP_003405971.1| - 0.00014 21.3 0.0 0.00033 20.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|284172589|ref|YP_003405971.1| - 0.00018 20.7 0.0 0.00036 19.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|284172589|ref|YP_003405971.1| - 0.00028 20.4 0.0 0.012 15.0 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|284172589|ref|YP_003405971.1| - 0.00032 20.8 0.1 0.00088 19.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|284172589|ref|YP_003405971.1| - 0.00037 21.3 0.2 0.0011 19.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284172589|ref|YP_003405971.1| - 0.00086 19.2 0.2 0.0024 17.7 0.0 1.9 3 0 0 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|284172589|ref|YP_003405971.1| - 0.00097 18.2 0.0 0.05 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|284172589|ref|YP_003405971.1| - 0.0014 18.6 0.2 0.003 17.5 0.1 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|284172589|ref|YP_003405971.1| - 0.0067 16.7 1.2 0.03 14.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|284172589|ref|YP_003405971.1| - 0.012 15.2 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|284172589|ref|YP_003405971.1| - 0.019 14.3 0.3 0.12 11.7 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|284172589|ref|YP_003405971.1| - 0.019 15.2 0.0 0.05 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain TOBE PF03459.12 gi|284172589|ref|YP_003405971.1| - 0.023 14.7 0.0 0.17 11.9 0.0 2.5 2 0 0 2 2 2 0 TOBE domain Miro PF08477.8 gi|284172589|ref|YP_003405971.1| - 0.046 14.2 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|284172589|ref|YP_003405971.1| - 0.051 13.2 0.0 0.092 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|284172589|ref|YP_003405971.1| - 0.078 12.8 0.1 0.55 10.1 0.0 2.5 3 0 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|284172589|ref|YP_003405971.1| - 0.092 12.2 0.0 0.33 10.3 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|284172589|ref|YP_003405971.1| - 0.11 11.3 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF3987 PF13148.1 gi|284172589|ref|YP_003405971.1| - 0.13 10.8 0.0 0.22 10.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) SBP_bac_1 PF01547.20 gi|284172590|ref|YP_003405972.1| - 3.6e-26 92.6 10.3 3.6e-26 92.6 7.2 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|284172590|ref|YP_003405972.1| - 5.3e-24 85.4 12.6 5.3e-24 85.4 8.7 1.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|284172590|ref|YP_003405972.1| - 0.001 18.8 1.7 0.0021 17.8 1.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|284172591|ref|YP_003405973.1| - 3.8e-17 62.3 18.3 3.8e-17 62.3 12.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284172592|ref|YP_003405974.1| - 4.9e-19 68.5 15.4 4.9e-19 68.5 10.7 1.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Peptidase_M24 PF00557.19 gi|284172593|ref|YP_003405975.1| - 4.5e-16 59.0 0.3 6.9e-16 58.4 0.2 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Glyco_hydro_2_N PF02837.13 gi|284172594|ref|YP_003405976.1| - 1.7e-35 122.0 0.3 3.8e-35 120.9 0.2 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.12 gi|284172594|ref|YP_003405976.1| - 1.3e-17 63.6 0.0 2.2e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.16 gi|284172594|ref|YP_003405976.1| - 4.1e-16 59.3 0.1 1.9e-15 57.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|284172594|ref|YP_003405976.1| - 3.1e-05 24.2 0.0 6.7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Cellulase-like PF12876.2 gi|284172594|ref|YP_003405976.1| - 0.061 13.7 0.1 0.17 12.3 0.1 1.8 1 0 0 1 1 1 0 Sugar-binding cellulase-like BNR_2 PF13088.1 gi|284172595|ref|YP_003405977.1| - 3.1e-14 52.9 1.3 8e-07 28.6 0.0 2.5 1 1 3 4 4 4 4 BNR repeat-like domain BNR PF02012.15 gi|284172595|ref|YP_003405977.1| - 0.00022 20.5 14.6 0.071 12.9 0.2 4.4 4 0 0 4 4 4 3 BNR/Asp-box repeat adh_short PF00106.20 gi|284172596|ref|YP_003405978.1| - 2.3e-36 125.2 1.2 3.2e-36 124.7 0.9 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284172596|ref|YP_003405978.1| - 3.2e-29 102.4 0.0 4.4e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284172596|ref|YP_003405978.1| - 7.4e-17 61.5 0.6 9.5e-17 61.2 0.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284172596|ref|YP_003405978.1| - 1.6e-05 24.4 0.3 3.2e-05 23.5 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|284172596|ref|YP_003405978.1| - 0.0021 17.0 0.1 0.0037 16.1 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain 2-Hacid_dh_C PF02826.14 gi|284172596|ref|YP_003405978.1| - 0.0033 16.5 0.0 0.0055 15.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.10 gi|284172596|ref|YP_003405978.1| - 0.042 12.7 0.0 0.046 12.6 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|284172596|ref|YP_003405978.1| - 0.21 11.5 2.8 0.46 10.4 1.9 1.7 1 1 0 1 1 1 0 NADH(P)-binding Alpha-L-AF_C PF06964.7 gi|284172597|ref|YP_003405979.1| - 0.0068 16.2 0.0 0.019 14.7 0.0 1.8 1 1 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus Glyco_hydro_43 PF04616.9 gi|284172598|ref|YP_003405980.1| - 1.1e-56 191.9 8.3 1.6e-56 191.4 5.7 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.1 gi|284172598|ref|YP_003405980.1| - 1.2e-41 141.3 12.9 3.7e-26 91.5 3.7 3.2 2 1 1 3 3 3 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.17 gi|284172598|ref|YP_003405980.1| - 1.6e-16 60.4 4.8 3.2e-16 59.5 3.3 1.5 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin domain TAT_signal PF10518.4 gi|284172598|ref|YP_003405980.1| - 0.3 11.1 1.9 0.61 10.2 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.17 gi|284172599|ref|YP_003405981.1| - 6.4e-23 81.5 0.0 1.3e-22 80.6 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284172599|ref|YP_003405981.1| - 0.0064 16.2 0.0 0.021 14.6 0.0 1.9 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ABC_tran PF00005.22 gi|284172600|ref|YP_003405982.1| - 5.2e-32 111.0 0.0 9.2e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|284172600|ref|YP_003405982.1| - 2.2e-09 37.1 1.9 5.2e-09 35.9 0.2 2.4 3 0 0 3 3 2 1 TOBE domain AAA_21 PF13304.1 gi|284172600|ref|YP_003405982.1| - 6.8e-09 36.1 0.0 0.0011 19.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|284172600|ref|YP_003405982.1| - 1.9e-06 27.8 0.1 0.00027 20.9 0.1 2.8 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|284172600|ref|YP_003405982.1| - 0.0002 20.6 0.4 0.0049 16.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|284172600|ref|YP_003405982.1| - 0.00094 18.3 0.0 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|284172600|ref|YP_003405982.1| - 0.0013 17.9 0.0 0.0024 17.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|284172600|ref|YP_003405982.1| - 0.0015 18.7 0.3 0.0036 17.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|284172600|ref|YP_003405982.1| - 0.0024 16.6 0.0 0.0031 16.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|284172600|ref|YP_003405982.1| - 0.0037 17.4 0.1 0.013 15.7 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|284172600|ref|YP_003405982.1| - 0.0061 16.5 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284172600|ref|YP_003405982.1| - 0.011 15.2 0.0 0.029 13.8 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|284172600|ref|YP_003405982.1| - 0.025 14.4 0.0 0.055 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|284172600|ref|YP_003405982.1| - 0.025 13.9 0.0 0.2 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|284172600|ref|YP_003405982.1| - 0.044 13.2 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|284172600|ref|YP_003405982.1| - 0.069 13.9 0.0 0.19 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|284172600|ref|YP_003405982.1| - 0.071 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|284172600|ref|YP_003405982.1| - 0.083 12.5 0.1 0.33 10.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|284172600|ref|YP_003405982.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|284172600|ref|YP_003405982.1| - 0.16 11.7 0.8 0.36 10.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|284172601|ref|YP_003405983.1| - 2.2e-35 121.9 0.0 4e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284172601|ref|YP_003405983.1| - 9.2e-09 35.6 0.0 0.0014 18.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|284172601|ref|YP_003405983.1| - 4.2e-06 26.6 2.2 1e-05 25.3 0.7 2.3 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|284172601|ref|YP_003405983.1| - 0.00014 21.1 0.0 0.0028 16.9 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|284172601|ref|YP_003405983.1| - 0.00014 21.0 0.0 0.0051 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|284172601|ref|YP_003405983.1| - 0.00027 20.1 0.0 0.00044 19.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|284172601|ref|YP_003405983.1| - 0.00047 18.9 0.0 0.00065 18.4 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|284172601|ref|YP_003405983.1| - 0.0009 19.3 0.0 0.0033 17.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|284172601|ref|YP_003405983.1| - 0.0013 18.7 0.0 0.0031 17.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284172601|ref|YP_003405983.1| - 0.0029 17.1 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|284172601|ref|YP_003405983.1| - 0.0053 17.5 0.1 0.014 16.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|284172601|ref|YP_003405983.1| - 0.0069 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|284172601|ref|YP_003405983.1| - 0.0077 16.1 0.0 0.019 14.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|284172601|ref|YP_003405983.1| - 0.0098 15.8 0.0 0.028 14.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|284172601|ref|YP_003405983.1| - 0.012 15.6 1.9 0.04 14.0 1.3 1.9 1 0 0 1 1 1 0 TOBE domain AAA_18 PF13238.1 gi|284172601|ref|YP_003405983.1| - 0.018 15.3 0.0 0.04 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|284172601|ref|YP_003405983.1| - 0.034 14.3 0.1 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|284172601|ref|YP_003405983.1| - 0.04 13.3 0.9 0.38 10.1 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|284172601|ref|YP_003405983.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|284172601|ref|YP_003405983.1| - 0.06 13.6 0.1 0.13 12.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain Miro PF08477.8 gi|284172601|ref|YP_003405983.1| - 0.065 13.7 0.0 0.18 12.3 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein Zeta_toxin PF06414.7 gi|284172601|ref|YP_003405983.1| - 0.1 11.6 0.0 0.25 10.4 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.17 gi|284172601|ref|YP_003405983.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|284172602|ref|YP_003405984.1| - 1.8e-09 37.4 24.9 1.8e-09 37.4 17.3 2.4 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284172603|ref|YP_003405985.1| - 1.3e-20 73.6 13.3 1.3e-20 73.6 9.2 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4293 PF14126.1 gi|284172603|ref|YP_003405985.1| - 1.3 8.9 6.2 2.5 8.0 0.8 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4293) SBP_bac_8 PF13416.1 gi|284172604|ref|YP_003405986.1| - 3.8e-21 76.0 2.9 5e-21 75.6 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284172604|ref|YP_003405986.1| - 4.9e-12 46.2 2.3 6.3e-12 45.8 1.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein FAA_hydrolase PF01557.13 gi|284172605|ref|YP_003405987.1| - 2.1e-28 99.2 0.0 3.1e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_hydro_43 PF04616.9 gi|284172606|ref|YP_003405988.1| - 5.1e-48 163.6 8.0 6.8e-48 163.1 5.6 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.1 gi|284172606|ref|YP_003405988.1| - 1.6e-37 128.0 4.8 1.1e-19 70.7 0.1 2.4 1 1 1 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.17 gi|284172606|ref|YP_003405988.1| - 5.2e-13 49.1 0.6 8.6e-13 48.4 0.4 1.4 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin domain Glyco_hydro_32N PF00251.15 gi|284172606|ref|YP_003405988.1| - 0.14 11.5 0.1 0.14 11.5 0.1 2.3 2 1 1 3 3 3 0 Glycosyl hydrolases family 32 N-terminal domain DUF4567 PF15131.1 gi|284172608|ref|YP_003405990.1| - 0.013 15.6 0.2 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4567) DDE_3 PF13358.1 gi|284172610|ref|YP_003405992.1| - 4.9e-30 104.2 0.0 5.5e-30 104.0 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|284172610|ref|YP_003405992.1| - 6.1e-05 23.1 0.0 7.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.1 gi|284172611|ref|YP_003405993.1| - 4.4e-24 83.7 0.5 5.1e-22 77.1 0.0 3.2 3 0 0 3 3 3 1 Winged helix-turn helix HTH_29 PF13551.1 gi|284172611|ref|YP_003405993.1| - 1.6e-21 76.5 0.8 2e-21 76.2 0.1 1.5 2 0 0 2 2 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|284172611|ref|YP_003405993.1| - 3.8e-12 46.8 2.4 1.3e-10 41.8 0.0 2.8 2 1 1 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|284172611|ref|YP_003405993.1| - 7.9e-11 41.7 2.9 1.4e-10 40.9 0.3 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284172611|ref|YP_003405993.1| - 1.1e-07 31.2 0.6 2.1e-07 30.3 0.1 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_Tnp_IS630 PF01710.11 gi|284172611|ref|YP_003405993.1| - 7.3e-05 22.4 0.2 0.00013 21.6 0.1 1.4 1 0 0 1 1 1 1 Transposase HTH_38 PF13936.1 gi|284172611|ref|YP_003405993.1| - 0.00017 21.0 0.0 0.00066 19.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|284172611|ref|YP_003405993.1| - 0.00056 19.6 0.0 0.00087 19.0 0.0 1.4 1 1 0 1 1 1 1 ECF sigma factor HTH_Tnp_1 PF01527.15 gi|284172611|ref|YP_003405993.1| - 0.00083 19.2 2.0 0.00083 19.2 0.2 1.9 2 0 0 2 2 2 1 Transposase HTH_11 PF08279.7 gi|284172611|ref|YP_003405993.1| - 0.0047 16.5 0.2 0.026 14.1 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_36 PF13730.1 gi|284172611|ref|YP_003405993.1| - 0.011 15.8 0.0 0.048 13.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|284172611|ref|YP_003405993.1| - 0.016 14.8 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_4 PF13613.1 gi|284172611|ref|YP_003405993.1| - 0.018 14.5 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease MarR PF01047.17 gi|284172611|ref|YP_003405993.1| - 0.048 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_17 PF12728.2 gi|284172611|ref|YP_003405993.1| - 0.059 13.6 0.9 0.12 12.6 0.0 2.1 3 0 0 3 3 1 0 Helix-turn-helix domain Integrase_1 PF12835.2 gi|284172611|ref|YP_003405993.1| - 0.064 13.0 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 Integrase DUF387 PF04079.11 gi|284172611|ref|YP_003405993.1| - 0.074 12.4 0.1 0.44 9.8 0.0 1.9 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) TctC PF03401.9 gi|284172611|ref|YP_003405993.1| - 0.089 11.7 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor HTH_psq PF05225.11 gi|284172611|ref|YP_003405993.1| - 0.094 12.2 0.0 0.43 10.1 0.0 2.1 2 1 1 3 3 3 0 helix-turn-helix, Psq domain HTH_7 PF02796.10 gi|284172611|ref|YP_003405993.1| - 0.099 12.5 0.2 19 5.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase UPF0122 PF04297.9 gi|284172611|ref|YP_003405993.1| - 0.11 12.5 0.7 0.17 11.8 0.1 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like PadR PF03551.9 gi|284172611|ref|YP_003405993.1| - 0.11 12.2 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_3 PF01381.17 gi|284172611|ref|YP_003405993.1| - 0.84 9.5 2.9 1.4 8.8 0.0 2.7 3 1 1 4 4 3 0 Helix-turn-helix Glyoxalase_2 PF12681.2 gi|284172613|ref|YP_003405995.1| - 1.7e-19 70.4 0.1 2e-19 70.1 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284172613|ref|YP_003405995.1| - 1.3e-13 51.0 0.0 1.5e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284172613|ref|YP_003405995.1| - 0.083 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Response_reg PF00072.19 gi|284172615|ref|YP_003405997.1| - 3.7e-21 75.2 0.0 4.2e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Acyltransferase PF01553.16 gi|284172616|ref|YP_003405998.1| - 0.078 12.4 0.0 0.078 12.4 0.0 1.0 1 0 0 1 1 1 0 Acyltransferase DnaJ PF00226.26 gi|284172621|ref|YP_003406003.1| - 1e-05 25.1 0.2 1.3e-05 24.8 0.1 1.1 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|284172621|ref|YP_003406003.1| - 0.0043 16.4 0.1 0.0062 15.9 0.0 1.2 1 0 0 1 1 1 1 A repeated domain in UCH-protein DUF2250 PF10007.4 gi|284172622|ref|YP_003406004.1| - 0.00015 21.5 0.0 0.0018 18.1 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|284172622|ref|YP_003406004.1| - 0.02 14.5 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|284172622|ref|YP_003406004.1| - 0.035 14.4 0.0 0.068 13.5 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284172622|ref|YP_003406004.1| - 0.053 13.3 0.1 0.1 12.3 0.1 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.1 gi|284172622|ref|YP_003406004.1| - 0.083 12.2 0.0 5.4 6.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fic PF02661.13 gi|284172624|ref|YP_003406006.1| - 1.7e-07 31.8 0.0 2.6e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Fic/DOC family TrmB PF01978.14 gi|284172625|ref|YP_003406007.1| - 3.5e-09 36.2 1.9 6.8e-08 32.1 0.6 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284172625|ref|YP_003406007.1| - 0.00044 19.9 0.5 0.0011 18.6 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DUF3850 PF12961.2 gi|284172625|ref|YP_003406007.1| - 0.09 12.7 0.1 0.19 11.7 0.1 1.6 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3850) Response_reg PF00072.19 gi|284172626|ref|YP_003406008.1| - 5e-17 61.9 0.1 5.9e-17 61.6 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HrcA_DNA-bdg PF03444.10 gi|284172627|ref|YP_003406009.1| - 5.4e-37 125.0 0.2 8.4e-37 124.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|284172627|ref|YP_003406009.1| - 2.3e-09 37.2 0.0 3.8e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|284172627|ref|YP_003406009.1| - 1.1e-06 28.1 0.0 1.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain Put_DNA-bind_N PF06971.8 gi|284172627|ref|YP_003406009.1| - 0.0072 16.0 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus TrmB PF01978.14 gi|284172627|ref|YP_003406009.1| - 0.0085 15.7 0.0 0.017 14.8 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284172627|ref|YP_003406009.1| - 0.048 13.4 0.0 0.078 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|284172627|ref|YP_003406009.1| - 0.063 13.0 0.1 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Phage terminase small subunit HTH_24 PF13412.1 gi|284172627|ref|YP_003406009.1| - 0.071 12.5 0.2 0.22 10.9 0.2 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|284172627|ref|YP_003406009.1| - 0.1 12.1 0.1 0.52 9.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain ParD PF09386.5 gi|284172627|ref|YP_003406009.1| - 0.11 12.6 0.2 2.6 8.2 0.1 2.4 2 0 0 2 2 2 0 Antitoxin ParD Rio2_N PF09202.6 gi|284172627|ref|YP_003406009.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal TFIIE_alpha PF02002.12 gi|284172629|ref|YP_003406011.1| - 0.004 16.6 0.0 0.0049 16.3 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|284172629|ref|YP_003406011.1| - 0.0041 16.4 0.0 0.0063 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|284172629|ref|YP_003406011.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|284172629|ref|YP_003406011.1| - 0.025 14.2 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 MarR family PI3K_C2 PF00792.19 gi|284172629|ref|YP_003406011.1| - 0.07 12.9 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide 3-kinase C2 HTH_12 PF08461.5 gi|284172629|ref|YP_003406011.1| - 0.13 12.0 0.0 0.35 10.6 0.0 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Pheromone PF08015.6 gi|284172630|ref|YP_003406012.1| - 0.28 12.0 1.5 0.5 11.2 1.0 1.4 1 0 0 1 1 1 0 Fungal mating-type pheromone H-kinase_dim PF02895.9 gi|284172631|ref|YP_003406013.1| - 0.021 15.1 0.3 0.11 12.8 0.0 2.1 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain Syndecan PF01034.15 gi|284172631|ref|YP_003406013.1| - 3.4 7.3 8.7 15 5.3 2.0 2.4 2 0 0 2 2 2 0 Syndecan domain UbiA PF01040.13 gi|284172633|ref|YP_003406015.1| - 1.8e-29 102.7 25.7 2.3e-29 102.3 17.8 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family HTH_20 PF12840.2 gi|284172634|ref|YP_003406016.1| - 0.028 14.2 0.6 0.26 11.1 0.4 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|284172634|ref|YP_003406016.1| - 0.057 13.0 0.6 4.6 6.9 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DJ-1_PfpI_N PF13587.1 gi|284172635|ref|YP_003406017.1| - 0.1 12.1 0.2 0.42 10.1 0.0 1.8 2 0 0 2 2 2 0 N-terminal domain of DJ-1_PfpI family Hpt PF01627.18 gi|284172636|ref|YP_003406018.1| - 0.85 9.6 4.5 1 9.3 0.1 2.8 3 0 0 3 3 3 0 Hpt domain TAT_signal PF10518.4 gi|284172637|ref|YP_003406019.1| - 0.37 10.9 3.3 0.51 10.4 2.3 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4399 PF14347.1 gi|284172638|ref|YP_003406020.1| - 1.4e-19 69.8 0.0 2.3e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) TAT_signal PF10518.4 gi|284172638|ref|YP_003406020.1| - 0.035 14.1 0.4 0.051 13.5 0.3 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glt_symporter PF03616.9 gi|284172639|ref|YP_003406021.1| - 0.0011 17.6 2.7 0.0013 17.2 1.9 1.1 1 0 0 1 1 1 1 Sodium/glutamate symporter DUF2238 PF09997.4 gi|284172639|ref|YP_003406021.1| - 0.0034 16.7 7.4 0.11 11.8 5.1 2.2 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) MitoNEET_N PF10660.4 gi|284172639|ref|YP_003406021.1| - 0.06 13.1 1.2 0.14 12.0 0.0 2.2 2 1 1 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF3558 PF12079.3 gi|284172640|ref|YP_003406022.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) RHH_1 PF01402.16 gi|284172641|ref|YP_003406023.1| - 0.0094 15.8 0.6 0.019 14.8 0.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.10 gi|284172641|ref|YP_003406023.1| - 0.015 14.8 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_40 PF14493.1 gi|284172641|ref|YP_003406023.1| - 0.063 13.5 0.1 0.081 13.1 0.1 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain RHH_3 PF12651.2 gi|284172641|ref|YP_003406023.1| - 0.11 12.3 1.2 0.15 11.8 0.2 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix domain PADR1 PF08063.7 gi|284172642|ref|YP_003406024.1| - 0.011 15.0 0.1 0.016 14.5 0.1 1.2 1 0 0 1 1 1 0 PADR1 (NUC008) domain Lar_restr_allev PF14354.1 gi|284172642|ref|YP_003406024.1| - 0.038 14.2 0.2 0.047 13.9 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.7 gi|284172643|ref|YP_003406025.1| - 0.022 14.5 1.1 0.079 12.7 0.7 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|284172643|ref|YP_003406025.1| - 0.062 13.1 0.2 0.071 12.9 0.2 1.2 1 0 0 1 1 1 0 RNHCP domain DUF3797 PF12677.2 gi|284172643|ref|YP_003406025.1| - 0.064 12.8 0.5 0.5 10.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) DUF164 PF02591.10 gi|284172643|ref|YP_003406025.1| - 0.19 11.5 1.1 1.9 8.3 0.7 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain zf-TFIIB PF13453.1 gi|284172643|ref|YP_003406025.1| - 0.24 10.6 6.5 0.38 9.9 0.1 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger Acetyltransf_3 PF13302.1 gi|284172644|ref|YP_003406026.1| - 4.5e-18 65.7 0.1 6.7e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|284172644|ref|YP_003406026.1| - 0.00055 19.9 0.0 0.00064 19.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DoxX PF07681.7 gi|284172646|ref|YP_003406028.1| - 4.8e-11 42.9 6.5 4.8e-11 42.9 4.5 1.4 2 0 0 2 2 2 1 DoxX DoxX_3 PF13781.1 gi|284172646|ref|YP_003406028.1| - 0.099 13.0 4.3 0.065 13.6 1.0 1.9 1 1 1 2 2 2 0 DoxX-like family PrgI PF12666.2 gi|284172646|ref|YP_003406028.1| - 5.4 7.2 6.1 4.2 7.5 3.1 1.7 1 1 0 1 1 1 0 PrgI family protein HxlR PF01638.12 gi|284172647|ref|YP_003406029.1| - 4.4e-27 93.5 0.0 5.5e-27 93.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|284172647|ref|YP_003406029.1| - 0.00027 20.6 0.0 0.00049 19.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|284172648|ref|YP_003406030.1| - 5.7e-06 25.6 0.4 1.6e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|284172648|ref|YP_003406030.1| - 6.2e-05 22.5 0.1 0.00014 21.4 0.1 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|284172648|ref|YP_003406030.1| - 0.00036 19.9 2.2 0.00041 19.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|284172648|ref|YP_003406030.1| - 0.0024 17.4 1.1 0.0064 16.1 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.17 gi|284172648|ref|YP_003406030.1| - 0.0039 17.0 0.0 0.0095 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix MerR PF00376.18 gi|284172648|ref|YP_003406030.1| - 0.0074 15.8 0.1 0.032 13.8 0.1 2.0 1 1 0 1 1 1 1 MerR family regulatory protein HTH_AsnC-type PF13404.1 gi|284172648|ref|YP_003406030.1| - 0.0082 15.6 1.0 0.037 13.5 0.7 2.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|284172648|ref|YP_003406030.1| - 0.0096 15.5 0.6 0.031 13.9 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.1 gi|284172648|ref|YP_003406030.1| - 0.0097 16.0 4.2 0.014 15.5 0.1 3.0 2 1 0 3 3 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|284172648|ref|YP_003406030.1| - 0.075 12.5 0.2 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.1 gi|284172648|ref|YP_003406030.1| - 0.076 13.1 0.1 1.2 9.2 0.1 2.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|284172648|ref|YP_003406030.1| - 0.079 12.9 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 Transposase HTH_36 PF13730.1 gi|284172648|ref|YP_003406030.1| - 0.093 12.8 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain MerR_1 PF13411.1 gi|284172648|ref|YP_003406030.1| - 0.12 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein DUF898 PF05987.8 gi|284172649|ref|YP_003406031.1| - 0.095 11.5 4.8 0.94 8.3 1.8 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF898) Alg6_Alg8 PF03155.10 gi|284172649|ref|YP_003406031.1| - 1.4 7.6 5.5 5.2 5.8 0.7 2.0 2 0 0 2 2 2 0 ALG6, ALG8 glycosyltransferase family DUF4177 PF13783.1 gi|284172650|ref|YP_003406032.1| - 1.1e-13 50.5 0.2 1.3e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF318 PF03773.8 gi|284172651|ref|YP_003406033.1| - 1.1e-43 149.3 4.2 1.6e-43 148.8 2.9 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.8 gi|284172651|ref|YP_003406033.1| - 9.5e-16 57.3 1.7 2e-15 56.3 1.2 1.6 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|284172651|ref|YP_003406033.1| - 0.0001 21.8 0.8 0.00019 20.9 0.5 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ribosomal_L24e PF01246.15 gi|284172651|ref|YP_003406033.1| - 0.0065 16.2 0.3 0.017 14.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal protein L24e Arc_trans_TRASH PF08394.5 gi|284172651|ref|YP_003406033.1| - 0.053 13.6 0.1 0.098 12.8 0.1 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain Bac_Ubq_Cox PF01654.12 gi|284172655|ref|YP_003406037.1| - 6e-138 459.9 21.3 7e-138 459.6 14.7 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Cyto_ox_2 PF02322.10 gi|284172656|ref|YP_003406038.1| - 2.1e-73 247.3 28.3 3.4e-73 246.6 19.6 1.3 1 1 0 1 1 1 1 Cytochrome oxidase subunit II DUF979 PF06166.7 gi|284172656|ref|YP_003406038.1| - 0.019 13.9 8.8 0.01 14.8 2.9 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF979) Elf1 PF05129.8 gi|284172659|ref|YP_003406041.1| - 0.033 13.8 0.6 0.042 13.5 0.4 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn-ribbon_8 PF09723.5 gi|284172659|ref|YP_003406041.1| - 0.71 9.8 4.8 1.2 9.1 3.3 1.4 1 1 0 1 1 1 0 Zinc ribbon domain Glyco_trans_4_4 PF13579.1 gi|284172661|ref|YP_003406043.1| - 1e-14 54.9 6.8 5.1e-14 52.7 4.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|284172661|ref|YP_003406043.1| - 1e-12 47.8 0.0 2.6e-12 46.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|284172661|ref|YP_003406043.1| - 7.5e-07 29.3 0.5 2.1e-06 27.9 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|284172661|ref|YP_003406043.1| - 0.00041 20.1 0.1 0.00081 19.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|284172661|ref|YP_003406043.1| - 0.00083 19.1 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|284172661|ref|YP_003406043.1| - 0.056 13.7 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glu-tRNAGln PF02686.10 gi|284172661|ref|YP_003406043.1| - 0.13 12.0 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit DUF354 PF04007.7 gi|284172662|ref|YP_003406044.1| - 1.8e-17 63.2 0.0 2.4e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) CARDB PF07705.6 gi|284172663|ref|YP_003406045.1| - 0.0068 16.4 2.4 0.059 13.4 0.3 2.7 2 1 0 2 2 2 1 CARDB BiPBP_C PF06832.7 gi|284172663|ref|YP_003406045.1| - 0.042 13.7 0.4 1.9 8.4 0.1 3.1 3 1 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family DUF1034 PF06280.7 gi|284172663|ref|YP_003406045.1| - 0.18 12.2 3.9 2.5 8.5 0.1 3.2 3 0 0 3 3 3 0 Fn3-like domain (DUF1034) Sigma70_r4 PF04545.11 gi|284172665|ref|YP_003406047.1| - 0.0014 17.8 0.0 0.0014 17.8 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 DDE_5 PF13546.1 gi|284172665|ref|YP_003406047.1| - 0.0039 16.1 0.0 0.0039 16.0 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Phage_terminase PF10668.4 gi|284172665|ref|YP_003406047.1| - 0.044 13.5 0.0 0.053 13.3 0.0 1.1 1 0 0 1 1 1 0 Phage terminase small subunit HNH PF01844.18 gi|284172666|ref|YP_003406048.1| - 9.7e-12 44.5 2.6 1.6e-11 43.9 1.8 1.4 1 1 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.1 gi|284172666|ref|YP_003406048.1| - 6.5e-05 22.6 0.3 9e-05 22.1 0.2 1.2 1 0 0 1 1 1 1 HNH endonuclease Sgf11 PF08209.6 gi|284172666|ref|YP_003406048.1| - 0.032 13.5 0.4 0.032 13.5 0.3 1.8 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF968 PF06147.6 gi|284172666|ref|YP_003406048.1| - 0.057 13.3 3.0 0.061 13.2 2.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF968) DZR PF12773.2 gi|284172666|ref|YP_003406048.1| - 0.12 12.2 0.6 0.29 11.0 0.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF164 PF02591.10 gi|284172666|ref|YP_003406048.1| - 0.44 10.4 5.6 5.9 6.7 0.2 2.4 2 1 0 2 2 2 0 Putative zinc ribbon domain BNR PF02012.15 gi|284172667|ref|YP_003406049.1| - 8.3e-09 33.9 23.3 0.049 13.4 0.1 6.5 7 0 0 7 7 7 5 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|284172667|ref|YP_003406049.1| - 6.3e-07 28.6 1.8 0.01 14.8 0.1 3.6 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 DUF4185 PF13810.1 gi|284172667|ref|YP_003406049.1| - 4.4e-05 22.5 2.7 2 7.2 0.0 4.4 2 2 2 5 5 5 3 Domain of unknown function (DUF4185) BNR_2 PF13088.1 gi|284172667|ref|YP_003406049.1| - 9.8e-05 21.7 7.2 0.5 9.6 0.3 4.5 1 1 2 3 3 3 3 BNR repeat-like domain EPTP PF03736.12 gi|284172667|ref|YP_003406049.1| - 0.11 12.2 0.0 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 EPTP domain Mo-co_dimer PF03404.11 gi|284172667|ref|YP_003406049.1| - 0.2 11.2 3.3 38 3.9 0.2 3.8 4 0 0 4 4 4 0 Mo-co oxidoreductase dimerisation domain BNR_3 PF13859.1 gi|284172667|ref|YP_003406049.1| - 3.4 6.6 4.5 33 3.4 0.5 3.3 3 1 0 3 3 3 0 BNR repeat-like domain Aldedh PF00171.17 gi|284172670|ref|YP_003406052.1| - 1.2e-165 551.3 0.0 1.5e-165 551.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284172670|ref|YP_003406052.1| - 0.0078 14.9 0.0 0.039 12.6 0.0 1.9 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Cupin_2 PF07883.6 gi|284172671|ref|YP_003406053.1| - 3.7e-19 68.0 0.4 4.9e-19 67.6 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|284172671|ref|YP_003406053.1| - 3.2e-06 26.4 0.0 4.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|284172671|ref|YP_003406053.1| - 1.2e-05 24.9 0.1 1.5e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|284172671|ref|YP_003406053.1| - 0.00015 21.2 0.0 0.00022 20.7 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|284172671|ref|YP_003406053.1| - 0.0012 18.4 0.0 0.0023 17.5 0.0 1.3 1 1 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|284172671|ref|YP_003406053.1| - 0.0031 17.1 0.1 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|284172671|ref|YP_003406053.1| - 0.028 14.2 0.1 0.036 13.8 0.1 1.3 1 1 0 1 1 1 0 ChrR Cupin-like domain CENP-C_C PF11699.3 gi|284172671|ref|YP_003406053.1| - 0.068 13.1 0.0 0.087 12.8 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like EutQ PF06249.7 gi|284172671|ref|YP_003406053.1| - 0.084 12.4 0.0 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Cas_Cas2CT1978 PF09707.5 gi|284172671|ref|YP_003406053.1| - 0.13 12.2 0.0 0.49 10.3 0.0 1.9 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cas2CT1978) NMT1 PF09084.6 gi|284172672|ref|YP_003406054.1| - 5.9e-07 29.3 0.0 0.0014 18.2 0.0 2.8 2 1 0 2 2 2 2 NMT1/THI5 like NMT1_2 PF13379.1 gi|284172672|ref|YP_003406054.1| - 0.00019 20.8 0.0 0.039 13.3 0.0 2.9 3 0 0 3 3 3 2 NMT1-like family SBP_bac_3 PF00497.15 gi|284172672|ref|YP_003406054.1| - 0.024 13.9 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|284172673|ref|YP_003406055.1| - 5.8e-09 35.8 0.0 8.2e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|284172673|ref|YP_003406055.1| - 1.2e-05 24.8 0.0 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|284172673|ref|YP_003406055.1| - 0.00029 20.1 0.0 0.00046 19.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.1 gi|284172673|ref|YP_003406055.1| - 0.028 13.8 0.0 0.081 12.2 0.0 1.5 1 1 0 1 1 1 0 NMT1-like family NMT1 PF09084.6 gi|284172674|ref|YP_003406056.1| - 2.6e-36 125.2 0.0 4e-36 124.6 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|284172674|ref|YP_003406056.1| - 8.2e-06 25.3 0.1 6e-05 22.5 0.1 2.3 1 1 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.2 gi|284172674|ref|YP_003406056.1| - 2.7e-05 23.6 0.1 4e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein Glyoxalase PF00903.20 gi|284172675|ref|YP_003406057.1| - 1.5e-11 44.3 0.6 5.2e-11 42.6 0.4 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|284172675|ref|YP_003406057.1| - 3.9e-09 37.0 0.6 5e-09 36.7 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|284172675|ref|YP_003406057.1| - 0.00047 20.1 0.1 0.00062 19.7 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284172675|ref|YP_003406057.1| - 0.041 13.7 0.2 0.096 12.5 0.0 1.7 2 1 0 2 2 2 0 Glyoxalase-like domain TrmB PF01978.14 gi|284172676|ref|YP_003406058.1| - 1.9e-06 27.4 0.0 3.9e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284172676|ref|YP_003406058.1| - 0.00026 20.7 0.0 0.00057 19.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284172676|ref|YP_003406058.1| - 0.0053 16.3 0.0 0.009 15.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.1 gi|284172676|ref|YP_003406058.1| - 0.024 14.7 0.1 0.042 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|284172676|ref|YP_003406058.1| - 0.043 13.2 0.0 0.087 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|284172676|ref|YP_003406058.1| - 0.083 12.2 0.0 0.82 9.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|284172676|ref|YP_003406058.1| - 0.1 11.9 0.0 0.1 11.9 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 ATPgrasp_Ter PF15632.1 gi|284172679|ref|YP_003406061.1| - 1.6e-18 66.5 0.0 2.2e-09 36.5 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|284172679|ref|YP_003406061.1| - 2.8e-15 56.5 0.1 8.8e-15 54.9 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|284172679|ref|YP_003406061.1| - 0.00083 19.2 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|284172679|ref|YP_003406061.1| - 0.005 16.1 0.0 0.0089 15.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GATase_7 PF13537.1 gi|284172680|ref|YP_003406062.1| - 2e-10 40.4 0.0 4.3e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Asn_synthase PF00733.16 gi|284172680|ref|YP_003406062.1| - 1.2e-09 38.0 0.1 1.9e-05 24.3 0.0 2.3 2 1 0 2 2 2 2 Asparagine synthase GATase_6 PF13522.1 gi|284172680|ref|YP_003406062.1| - 1.1e-07 31.8 0.0 3.1e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain DUF3700 PF12481.3 gi|284172680|ref|YP_003406062.1| - 3.9e-06 26.2 0.0 5.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Aluminium induced protein GvpK PF05121.7 gi|284172681|ref|YP_003406063.1| - 0.1 12.4 0.2 0.19 11.5 0.1 1.5 1 1 0 1 1 1 0 Gas vesicle protein K DUF372 PF04036.7 gi|284172681|ref|YP_003406063.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF372) Polysacc_lyase PF14099.1 gi|284172683|ref|YP_003406065.1| - 0.00013 21.6 0.2 0.00015 21.4 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide lyase Polysacc_deac_1 PF01522.16 gi|284172685|ref|YP_003406067.1| - 0.0001 21.8 0.4 0.0048 16.5 0.0 2.6 3 0 0 3 3 3 2 Polysaccharide deacetylase DoxX PF07681.7 gi|284172686|ref|YP_003406068.1| - 0.03 14.7 0.0 0.089 13.2 0.1 1.6 2 0 0 2 2 2 0 DoxX Med9 PF07544.8 gi|284172686|ref|YP_003406068.1| - 0.27 10.9 2.1 0.43 10.3 0.6 1.8 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF16 PF01519.11 gi|284172686|ref|YP_003406068.1| - 0.3 11.3 1.4 0.66 10.2 1.0 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF3797 PF12677.2 gi|284172687|ref|YP_003406069.1| - 0.0076 15.8 0.5 0.064 12.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3797) RNHCP PF12647.2 gi|284172687|ref|YP_003406069.1| - 0.16 11.7 0.5 0.21 11.4 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain PhnA_Zn_Ribbon PF08274.7 gi|284172687|ref|YP_003406069.1| - 0.28 11.0 4.2 1.9 8.3 2.9 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.1 gi|284172687|ref|YP_003406069.1| - 1.2 8.3 7.0 2.7 7.2 0.6 2.3 2 1 0 2 2 2 0 Transcription factor zinc-finger HTH_10 PF04967.7 gi|284172688|ref|YP_003406070.1| - 1.4e-15 56.5 0.2 6.1e-14 51.3 0.1 2.4 2 0 0 2 2 2 1 HTH DNA binding domain GerE PF00196.14 gi|284172688|ref|YP_003406070.1| - 1.2e-08 34.1 0.0 1.8e-06 27.1 0.0 2.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|284172688|ref|YP_003406070.1| - 6.6e-08 31.9 0.2 0.021 14.4 0.1 3.3 2 1 1 3 3 3 2 Homeodomain-like domain HTH_24 PF13412.1 gi|284172688|ref|YP_003406070.1| - 1.1e-07 31.0 0.0 0.008 15.5 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|284172688|ref|YP_003406070.1| - 2.5e-07 30.2 0.3 0.0038 16.8 0.0 2.6 2 0 0 2 2 2 2 HTH domain MerR PF00376.18 gi|284172688|ref|YP_003406070.1| - 8.1e-07 28.5 0.8 0.0017 17.8 0.0 2.8 2 1 0 2 2 2 2 MerR family regulatory protein HTH_20 PF12840.2 gi|284172688|ref|YP_003406070.1| - 8.5e-07 28.6 0.4 0.00046 19.9 0.0 3.0 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284172688|ref|YP_003406070.1| - 1.7e-06 27.5 0.0 0.00032 20.3 0.0 3.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.11 gi|284172688|ref|YP_003406070.1| - 4.1e-06 26.0 0.2 0.09 12.0 0.0 2.9 2 0 0 2 2 2 2 Sigma-70, region 4 GntR PF00392.16 gi|284172688|ref|YP_003406070.1| - 4.8e-06 25.9 0.8 4.8e-05 22.7 0.0 2.9 3 0 0 3 3 2 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|284172688|ref|YP_003406070.1| - 1.5e-05 24.3 0.4 0.0037 16.6 0.0 3.1 3 1 0 3 3 2 1 Sigma-70, region 4 TetR_N PF00440.18 gi|284172688|ref|YP_003406070.1| - 3.6e-05 23.3 0.0 0.027 14.0 0.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|284172688|ref|YP_003406070.1| - 3.7e-05 23.1 0.8 0.028 13.9 0.1 3.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|284172688|ref|YP_003406070.1| - 6.8e-05 22.6 0.0 0.6 10.0 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix HTH_Tnp_1 PF01527.15 gi|284172688|ref|YP_003406070.1| - 0.00012 21.9 0.2 0.22 11.5 0.0 3.0 3 0 0 3 3 2 1 Transposase HTH_28 PF13518.1 gi|284172688|ref|YP_003406070.1| - 0.00015 21.7 0.2 0.22 11.5 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284172688|ref|YP_003406070.1| - 0.00026 20.6 0.1 0.034 13.8 0.0 2.9 2 0 0 2 2 2 1 MarR family MerR_1 PF13411.1 gi|284172688|ref|YP_003406070.1| - 0.0016 18.2 0.0 0.16 11.7 0.0 2.5 2 0 0 2 2 2 1 MerR HTH family regulatory protein HTH_29 PF13551.1 gi|284172688|ref|YP_003406070.1| - 0.0023 18.0 1.0 7.9 6.6 0.0 3.5 3 0 0 3 3 3 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|284172688|ref|YP_003406070.1| - 0.0028 17.4 0.1 0.65 9.8 0.0 2.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|284172688|ref|YP_003406070.1| - 0.0029 17.2 0.1 0.25 11.0 0.0 2.7 2 0 0 2 2 2 1 MarR family HTH_31 PF13560.1 gi|284172688|ref|YP_003406070.1| - 0.0038 17.4 0.7 0.15 12.3 0.1 3.1 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|284172688|ref|YP_003406070.1| - 0.019 15.0 0.1 3.4 7.8 0.0 3.0 3 0 0 3 3 3 0 Transcriptional regulator HTH_19 PF12844.2 gi|284172688|ref|YP_003406070.1| - 0.02 14.9 0.0 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|284172688|ref|YP_003406070.1| - 0.026 14.2 0.0 6.4 6.5 0.0 2.8 3 0 0 3 3 2 0 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|284172688|ref|YP_003406070.1| - 0.027 14.3 0.0 0.11 12.3 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase LacI PF00356.16 gi|284172688|ref|YP_003406070.1| - 0.029 13.9 0.5 0.76 9.4 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family HTH_Mga PF08280.6 gi|284172688|ref|YP_003406070.1| - 0.032 13.9 0.1 2 8.2 0.0 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.2 gi|284172688|ref|YP_003406070.1| - 0.032 14.4 0.1 3.4 7.9 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|284172688|ref|YP_003406070.1| - 0.034 14.3 0.1 0.15 12.2 0.0 2.2 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284172688|ref|YP_003406070.1| - 0.036 13.6 4.1 1.2 8.7 0.2 3.5 3 1 0 3 3 2 0 AsnC-type helix-turn-helix domain Terminase_5 PF06056.7 gi|284172688|ref|YP_003406070.1| - 0.043 13.3 0.1 46 3.6 0.0 3.3 2 1 1 3 3 3 0 Putative ATPase subunit of terminase (gpP-like) HTH_DeoR PF08220.7 gi|284172688|ref|YP_003406070.1| - 0.049 13.1 0.5 7 6.2 0.1 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|284172688|ref|YP_003406070.1| - 0.05 12.7 0.7 10 5.4 0.0 3.1 2 1 1 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 LexA_DNA_bind PF01726.11 gi|284172688|ref|YP_003406070.1| - 0.051 13.1 0.7 0.23 11.0 0.1 2.4 2 0 0 2 2 2 0 LexA DNA binding domain Fe_dep_repress PF01325.14 gi|284172688|ref|YP_003406070.1| - 0.076 12.9 0.0 0.44 10.5 0.0 2.2 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|284172688|ref|YP_003406070.1| - 0.085 12.4 0.9 1 9.0 0.0 3.0 3 0 0 3 3 2 0 IclR helix-turn-helix domain FaeA PF04703.7 gi|284172688|ref|YP_003406070.1| - 0.12 12.5 0.1 3.4 7.9 0.0 2.5 2 0 0 2 2 2 0 FaeA-like protein AcetylCoA_hyd_C PF13336.1 gi|284172688|ref|YP_003406070.1| - 0.13 11.9 0.1 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Acetyl-CoA hydrolase/transferase C-terminal domain Phage_CI_repr PF07022.8 gi|284172688|ref|YP_003406070.1| - 0.14 12.2 0.0 16 5.6 0.0 2.4 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_36 PF13730.1 gi|284172688|ref|YP_003406070.1| - 0.16 12.0 0.0 0.39 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|284172689|ref|YP_003406071.1| - 2.6e-12 46.3 0.4 3.1e-12 46.0 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|284172689|ref|YP_003406071.1| - 0.014 15.2 0.1 0.019 14.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TRAM PF01938.15 gi|284172692|ref|YP_003406074.1| - 7e-15 54.5 2.9 1.1e-14 53.8 2.0 1.4 1 0 0 1 1 1 1 TRAM domain TrmB PF01978.14 gi|284172693|ref|YP_003406075.1| - 4.5e-21 74.3 0.1 8.3e-21 73.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|284172693|ref|YP_003406075.1| - 0.00086 18.3 0.1 0.0013 17.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_20 PF12840.2 gi|284172693|ref|YP_003406075.1| - 0.0089 15.8 0.4 0.1 12.4 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284172693|ref|YP_003406075.1| - 0.018 14.6 0.1 0.042 13.5 0.0 1.7 1 0 0 1 1 1 0 MarR family E2F_TDP PF02319.15 gi|284172693|ref|YP_003406075.1| - 0.019 14.5 0.0 0.043 13.3 0.0 1.7 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Tup_N PF08581.5 gi|284172693|ref|YP_003406075.1| - 0.042 14.0 0.1 0.076 13.2 0.1 1.5 1 0 0 1 1 1 0 Tup N-terminal HTH_IclR PF09339.5 gi|284172693|ref|YP_003406075.1| - 0.072 12.6 0.4 0.2 11.2 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain GntR PF00392.16 gi|284172693|ref|YP_003406075.1| - 0.081 12.3 0.1 0.31 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|284172694|ref|YP_003406076.1| - 3.1e-05 23.7 0.0 6e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain DUF3320 PF11784.3 gi|284172694|ref|YP_003406076.1| - 0.033 13.7 0.1 0.094 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) HTH_24 PF13412.1 gi|284172695|ref|YP_003406077.1| - 4.1e-14 51.6 0.3 7.1e-14 50.9 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|284172695|ref|YP_003406077.1| - 5.5e-14 51.4 1.4 1.2e-13 50.3 1.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|284172695|ref|YP_003406077.1| - 4e-06 26.3 0.3 1e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|284172695|ref|YP_003406077.1| - 9e-06 25.4 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|284172695|ref|YP_003406077.1| - 1.9e-05 24.2 0.0 3.6e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|284172695|ref|YP_003406077.1| - 0.00028 20.3 0.4 0.00063 19.2 0.3 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|284172695|ref|YP_003406077.1| - 0.00053 19.6 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284172695|ref|YP_003406077.1| - 0.00069 19.8 0.1 0.0017 18.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|284172695|ref|YP_003406077.1| - 0.00069 19.2 0.0 0.0014 18.2 0.0 1.5 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|284172695|ref|YP_003406077.1| - 0.0016 17.9 0.0 0.0043 16.5 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.1 gi|284172695|ref|YP_003406077.1| - 0.0053 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain TFIIE_alpha PF02002.12 gi|284172695|ref|YP_003406077.1| - 0.01 15.3 0.1 0.02 14.3 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit EAP30 PF04157.11 gi|284172695|ref|YP_003406077.1| - 0.012 14.7 0.0 0.054 12.6 0.0 1.8 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_CodY PF08222.6 gi|284172695|ref|YP_003406077.1| - 0.014 14.7 0.0 0.032 13.5 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain P2 PF07194.6 gi|284172695|ref|YP_003406077.1| - 0.014 15.2 0.0 0.099 12.5 0.0 2.2 1 1 1 2 2 2 0 P2 response regulator binding domain GntR PF00392.16 gi|284172695|ref|YP_003406077.1| - 0.017 14.5 0.0 0.04 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|284172695|ref|YP_003406077.1| - 0.028 14.0 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|284172695|ref|YP_003406077.1| - 0.049 13.7 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.5 gi|284172695|ref|YP_003406077.1| - 0.054 13.0 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|284172695|ref|YP_003406077.1| - 0.064 12.8 0.1 0.25 10.9 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|284172695|ref|YP_003406077.1| - 0.086 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor FaeA PF04703.7 gi|284172695|ref|YP_003406077.1| - 0.1 12.7 0.0 0.3 11.2 0.0 1.7 2 0 0 2 2 2 0 FaeA-like protein HTH_45 PF14947.1 gi|284172695|ref|YP_003406077.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.7 gi|284172695|ref|YP_003406077.1| - 0.14 11.6 0.1 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Git3 PF11710.3 gi|284172696|ref|YP_003406078.1| - 0.021 14.3 0.3 0.021 14.3 0.2 2.2 2 1 1 3 3 3 0 G protein-coupled glucose receptor regulating Gpa2 HTH_38 PF13936.1 gi|284172699|ref|YP_003406081.1| - 0.0014 18.1 0.0 0.005 16.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1470 PF07336.6 gi|284172699|ref|YP_003406081.1| - 0.022 15.0 2.2 0.035 14.4 0.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1470) HTH_11 PF08279.7 gi|284172699|ref|YP_003406081.1| - 0.028 14.0 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HHH_8 PF14716.1 gi|284172699|ref|YP_003406081.1| - 0.032 14.4 0.2 0.064 13.4 0.2 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_17 PF12728.2 gi|284172699|ref|YP_003406081.1| - 0.12 12.6 0.0 0.59 10.4 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain TAT_signal PF10518.4 gi|284172700|ref|YP_003406082.1| - 0.034 14.1 0.3 0.098 12.7 0.2 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence bPH_2 PF03703.9 gi|284172701|ref|YP_003406083.1| - 1.6e-18 66.4 0.2 2.1e-18 66.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.9 gi|284172702|ref|YP_003406084.1| - 1.3e-41 140.4 4.7 1.9e-15 56.6 0.1 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|284172702|ref|YP_003406084.1| - 1.7e-06 27.7 0.0 0.0061 16.3 0.0 3.3 4 0 0 4 4 4 2 Bacterial PH domain LuxQ-periplasm PF09308.5 gi|284172702|ref|YP_003406084.1| - 0.058 12.7 0.2 0.089 12.1 0.1 1.2 1 0 0 1 1 1 0 LuxQ, periplasmic FA_desaturase PF00487.19 gi|284172702|ref|YP_003406084.1| - 0.34 10.2 2.3 0.29 10.5 0.1 1.9 2 0 0 2 2 2 0 Fatty acid desaturase Peptidase_S8 PF00082.17 gi|284172707|ref|YP_003406089.1| - 3.7e-52 177.2 4.7 3.7e-52 177.2 3.2 2.1 2 0 0 2 2 2 1 Subtilase family Motile_Sperm PF00635.21 gi|284172707|ref|YP_003406089.1| - 0.0049 16.4 0.0 0.014 15.0 0.0 1.8 1 0 0 1 1 1 1 MSP (Major sperm protein) domain Phage_integrase PF00589.17 gi|284172709|ref|YP_003406091.1| - 3.3e-14 52.9 0.0 1.5e-12 47.5 0.0 2.5 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|284172709|ref|YP_003406091.1| - 0.00017 21.6 0.0 0.0006 19.9 0.0 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|284172709|ref|YP_003406091.1| - 0.00019 21.6 0.0 0.00063 20.0 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_10 PF04967.7 gi|284172711|ref|YP_003406093.1| - 2e-19 68.9 0.1 3.9e-19 67.9 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|284172711|ref|YP_003406093.1| - 7e-05 22.4 0.1 0.00014 21.4 0.1 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|284172711|ref|YP_003406093.1| - 0.00013 21.2 0.5 0.00029 20.0 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|284172711|ref|YP_003406093.1| - 0.0019 17.5 0.0 0.0033 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.1 gi|284172711|ref|YP_003406093.1| - 0.0068 16.1 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|284172711|ref|YP_003406093.1| - 0.0086 15.5 0.1 0.35 10.3 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|284172711|ref|YP_003406093.1| - 0.0087 15.8 0.1 0.019 14.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_20 PF12840.2 gi|284172711|ref|YP_003406093.1| - 0.0098 15.6 0.2 0.11 12.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|284172711|ref|YP_003406093.1| - 0.015 15.0 0.2 0.038 13.7 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r3 PF04539.11 gi|284172711|ref|YP_003406093.1| - 0.017 15.0 0.1 0.06 13.2 0.0 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_28 PF13518.1 gi|284172711|ref|YP_003406093.1| - 0.018 15.0 0.0 0.05 13.6 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.18 gi|284172711|ref|YP_003406093.1| - 0.028 14.0 0.1 0.08 12.5 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_26 PF13443.1 gi|284172711|ref|YP_003406093.1| - 0.034 14.3 0.0 0.071 13.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Fe_dep_repress PF01325.14 gi|284172711|ref|YP_003406093.1| - 0.038 13.9 0.1 0.086 12.7 0.1 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|284172711|ref|YP_003406093.1| - 0.045 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_31 PF13560.1 gi|284172711|ref|YP_003406093.1| - 0.058 13.6 2.7 0.43 10.7 0.2 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|284172711|ref|YP_003406093.1| - 0.071 12.9 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_5 PF01022.15 gi|284172711|ref|YP_003406093.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Tnp_1 PF01527.15 gi|284172711|ref|YP_003406093.1| - 0.11 12.4 0.1 10 6.1 0.0 2.3 2 0 0 2 2 2 0 Transposase Cupin_2 PF07883.6 gi|284172712|ref|YP_003406094.1| - 9.3e-09 34.6 0.3 1.5e-08 33.9 0.2 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|284172712|ref|YP_003406094.1| - 0.00051 19.7 0.5 0.00077 19.1 0.3 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.2 gi|284172712|ref|YP_003406094.1| - 0.0067 16.0 0.2 0.0079 15.8 0.1 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|284172712|ref|YP_003406094.1| - 0.029 13.7 0.0 1.2 8.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF861) Cupin_7 PF12973.2 gi|284172712|ref|YP_003406094.1| - 0.046 13.5 0.0 0.091 12.6 0.0 1.5 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_1 PF00190.17 gi|284172712|ref|YP_003406094.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Cupin adh_short PF00106.20 gi|284172713|ref|YP_003406095.1| - 2.9e-33 115.1 4.7 6.2e-33 114.0 2.3 1.8 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|284172713|ref|YP_003406095.1| - 7e-24 84.9 0.0 9.2e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|284172713|ref|YP_003406095.1| - 3.7e-15 56.0 2.0 4.9e-15 55.6 1.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284172713|ref|YP_003406095.1| - 4.2e-06 26.3 0.7 7e-06 25.6 0.2 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284172713|ref|YP_003406095.1| - 5.4e-06 26.5 4.8 1.4e-05 25.2 3.3 1.6 1 1 0 1 1 1 1 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|284172713|ref|YP_003406095.1| - 0.0053 15.8 0.1 0.023 13.7 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|284172713|ref|YP_003406095.1| - 0.0099 15.6 0.7 0.021 14.6 0.5 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HEM4 PF02602.10 gi|284172713|ref|YP_003406095.1| - 0.029 13.5 0.3 0.08 12.1 0.1 1.7 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Shikimate_DH PF01488.15 gi|284172713|ref|YP_003406095.1| - 0.048 13.7 0.0 0.092 12.8 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|284172713|ref|YP_003406095.1| - 0.049 13.2 0.3 0.28 10.8 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDE_Tnp_1 PF01609.16 gi|284172714|ref|YP_003406096.1| - 3.2e-16 59.5 2.5 5.6e-16 58.7 1.8 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|284172714|ref|YP_003406096.1| - 3.8e-05 23.7 0.4 7.5e-05 22.8 0.3 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|284172714|ref|YP_003406096.1| - 0.0026 17.4 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain MOSC PF03473.12 gi|284172716|ref|YP_003406098.1| - 9.5e-10 38.0 0.1 1.1e-09 37.8 0.1 1.2 1 0 0 1 1 1 1 MOSC domain DUF1451 PF07295.6 gi|284172716|ref|YP_003406098.1| - 0.0089 15.8 0.1 0.014 15.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1451) DUF3883 PF13020.1 gi|284172716|ref|YP_003406098.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) Cys_Met_Meta_PP PF01053.15 gi|284172717|ref|YP_003406099.1| - 1.9e-129 431.3 0.0 2.1e-129 431.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|284172717|ref|YP_003406099.1| - 7.8e-08 31.7 0.3 2.5e-07 30.0 0.2 1.9 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|284172717|ref|YP_003406099.1| - 3.8e-05 22.5 0.0 0.00013 20.8 0.0 1.7 1 1 1 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|284172717|ref|YP_003406099.1| - 0.00017 20.8 0.0 0.00031 19.9 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|284172717|ref|YP_003406099.1| - 0.0023 16.9 0.0 0.003 16.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DUF4188 PF13826.1 gi|284172718|ref|YP_003406100.1| - 3.5e-09 36.7 0.2 4e-09 36.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) ABM PF03992.11 gi|284172718|ref|YP_003406100.1| - 1.7e-06 27.9 0.3 2.7e-06 27.2 0.2 1.3 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF3291 PF11695.3 gi|284172718|ref|YP_003406100.1| - 0.00055 19.3 1.1 0.0022 17.3 0.8 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF3291) DUF3303 PF11746.3 gi|284172718|ref|YP_003406100.1| - 0.037 14.3 0.4 0.37 11.1 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3303) RNA_GG_bind PF10258.4 gi|284172720|ref|YP_003406102.1| - 0.09 12.4 0.3 0.1 12.2 0.2 1.1 1 0 0 1 1 1 0 PHAX RNA-binding domain GCR1_C PF12550.3 gi|284172720|ref|YP_003406102.1| - 0.12 12.2 0.5 0.13 12.1 0.4 1.1 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes Sulfatase PF00884.18 gi|284172722|ref|YP_003406104.1| - 1e-54 185.8 0.0 1.3e-54 185.5 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|284172722|ref|YP_003406104.1| - 5.4e-07 29.2 0.0 9.5e-06 25.1 0.0 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|284172722|ref|YP_003406104.1| - 1.2e-05 24.8 0.0 1.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase_C PF14707.1 gi|284172722|ref|YP_003406104.1| - 0.028 14.6 0.0 0.057 13.7 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF229 PF02995.12 gi|284172722|ref|YP_003406104.1| - 0.032 12.6 0.0 0.11 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF229) IclR PF01614.13 gi|284172723|ref|YP_003406105.1| - 6.1e-33 113.2 0.1 2.6e-32 111.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172723|ref|YP_003406105.1| - 1.3e-08 34.2 0.0 2.6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284172723|ref|YP_003406105.1| - 1.5e-06 27.7 0.0 2.4e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284172723|ref|YP_003406105.1| - 8.8e-06 25.4 0.0 2.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284172723|ref|YP_003406105.1| - 2.1e-05 24.0 0.1 5.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284172723|ref|YP_003406105.1| - 3.6e-05 23.0 0.0 6.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|284172723|ref|YP_003406105.1| - 0.00047 19.8 0.0 0.00089 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|284172723|ref|YP_003406105.1| - 0.0024 17.4 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|284172723|ref|YP_003406105.1| - 0.0038 16.7 0.1 0.058 12.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|284172723|ref|YP_003406105.1| - 0.0043 16.5 0.1 0.0092 15.4 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|284172723|ref|YP_003406105.1| - 0.0096 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|284172723|ref|YP_003406105.1| - 0.01 15.7 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|284172723|ref|YP_003406105.1| - 0.011 15.4 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_41 PF14502.1 gi|284172723|ref|YP_003406105.1| - 0.018 14.6 0.0 0.068 12.7 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284172723|ref|YP_003406105.1| - 0.023 14.2 0.0 0.064 12.8 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rnk_N PF14760.1 gi|284172723|ref|YP_003406105.1| - 0.023 14.7 0.9 0.41 10.7 0.1 2.5 2 0 0 2 2 2 0 Rnk N-terminus HTH_10 PF04967.7 gi|284172723|ref|YP_003406105.1| - 0.041 13.4 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_27 PF13463.1 gi|284172723|ref|YP_003406105.1| - 0.068 13.5 0.1 0.14 12.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2984 PF11203.3 gi|284172723|ref|YP_003406105.1| - 0.069 13.2 0.2 1.2 9.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2984) TetR_N PF00440.18 gi|284172723|ref|YP_003406105.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_36 PF13730.1 gi|284172723|ref|YP_003406105.1| - 0.11 12.6 0.1 1 9.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain ABC_tran PF00005.22 gi|284172724|ref|YP_003406106.1| - 6.6e-35 120.3 0.0 1.2e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284172724|ref|YP_003406106.1| - 5.2e-10 39.7 0.0 9.5e-05 22.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|284172724|ref|YP_003406106.1| - 3.9e-09 36.3 0.0 1.2e-08 34.8 0.0 1.9 2 0 0 2 2 1 1 TOBE domain AAA_15 PF13175.1 gi|284172724|ref|YP_003406106.1| - 8.8e-07 28.3 0.0 0.00011 21.3 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|284172724|ref|YP_003406106.1| - 9.7e-06 25.6 0.0 2.5e-05 24.3 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|284172724|ref|YP_003406106.1| - 1.3e-05 24.5 0.0 3.7e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|284172724|ref|YP_003406106.1| - 0.00057 19.1 0.0 0.0011 18.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|284172724|ref|YP_003406106.1| - 0.0013 18.7 0.0 0.0018 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|284172724|ref|YP_003406106.1| - 0.0038 16.7 0.0 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.10 gi|284172724|ref|YP_003406106.1| - 0.0039 15.9 0.0 0.0053 15.4 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|284172724|ref|YP_003406106.1| - 0.0046 17.0 0.3 0.026 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|284172724|ref|YP_003406106.1| - 0.0087 16.4 0.0 0.019 15.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|284172724|ref|YP_003406106.1| - 0.012 14.7 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|284172724|ref|YP_003406106.1| - 0.081 12.3 0.0 0.31 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|284172724|ref|YP_003406106.1| - 0.099 12.5 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|284172724|ref|YP_003406106.1| - 0.13 11.9 0.0 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 Part of AAA domain Glyco_hydro_4 PF02056.11 gi|284172725|ref|YP_003406107.1| - 1e-59 200.9 0.1 1.5e-59 200.4 0.1 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|284172725|ref|YP_003406107.1| - 5.1e-41 140.9 0.0 1.6e-40 139.3 0.0 1.8 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|284172725|ref|YP_003406107.1| - 0.041 13.7 0.8 7.2 6.4 0.0 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|284172725|ref|YP_003406107.1| - 0.14 11.8 0.1 0.5 10.0 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SBP_bac_8 PF13416.1 gi|284172726|ref|YP_003406108.1| - 3.6e-16 59.7 0.7 4.8e-16 59.3 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|284172726|ref|YP_003406108.1| - 5.9e-14 52.5 0.2 1.8e-13 50.9 0.1 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein P22_Tail-4 PF11650.3 gi|284172726|ref|YP_003406108.1| - 0.04 13.4 0.6 0.72 9.3 0.1 2.2 2 0 0 2 2 2 0 P22 tail accessory factor TAT_signal PF10518.4 gi|284172726|ref|YP_003406108.1| - 0.075 13.0 0.1 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|284172727|ref|YP_003406109.1| - 4.4e-20 71.9 18.6 4.4e-20 71.9 12.9 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|284172728|ref|YP_003406110.1| - 2.1e-21 76.2 13.0 2.1e-21 76.2 9.0 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component MR_MLE_C PF13378.1 gi|284172729|ref|YP_003406111.1| - 1.6e-34 118.2 0.0 2.9e-34 117.3 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|284172729|ref|YP_003406111.1| - 5.4e-25 87.6 0.0 1e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|284172729|ref|YP_003406111.1| - 6.1e-12 45.8 0.0 1.6e-11 44.5 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain adh_short_C2 PF13561.1 gi|284172730|ref|YP_003406112.1| - 2.3e-33 115.9 0.0 2.6e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|284172730|ref|YP_003406112.1| - 2.4e-32 112.1 0.8 3.4e-32 111.6 0.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|284172730|ref|YP_003406112.1| - 2.9e-12 46.6 0.2 4.1e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|284172730|ref|YP_003406112.1| - 0.00031 20.2 0.1 0.00043 19.7 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|284172730|ref|YP_003406112.1| - 0.0074 16.3 0.3 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|284172730|ref|YP_003406112.1| - 0.043 14.2 0.3 0.096 13.1 0.2 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|284172730|ref|YP_003406112.1| - 0.18 11.4 0.5 0.3 10.7 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_hydro_32N PF00251.15 gi|284172731|ref|YP_003406113.1| - 7.9e-71 238.9 3.7 9.8e-71 238.6 2.6 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.7 gi|284172731|ref|YP_003406113.1| - 1.5e-13 50.8 0.0 3.7e-13 49.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal GlcNAc_2-epim PF07221.6 gi|284172733|ref|YP_003406115.1| - 7.3e-52 176.4 5.5 2.1e-51 174.9 3.8 1.6 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.9 gi|284172733|ref|YP_003406115.1| - 2.3e-09 37.1 1.8 0.00038 19.9 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 Glyco_hydro_88 PF07470.8 gi|284172733|ref|YP_003406115.1| - 0.00021 20.4 4.4 0.076 12.0 0.1 2.6 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 LANC_like PF05147.8 gi|284172733|ref|YP_003406115.1| - 0.00052 18.6 0.0 0.72 8.3 0.0 3.0 4 0 0 4 4 4 2 Lanthionine synthetase C-like protein DUF1680 PF07944.7 gi|284172733|ref|YP_003406115.1| - 0.0087 14.3 0.0 0.81 7.8 0.0 2.2 2 0 0 2 2 2 2 Putative glycosyl hydrolase of unknown function (DUF1680) Prenyltrans_1 PF13243.1 gi|284172733|ref|YP_003406115.1| - 0.018 15.0 3.2 6.3 6.8 0.0 3.1 2 1 1 3 3 3 0 Prenyltransferase-like C5-epim_C PF06662.8 gi|284172733|ref|YP_003406115.1| - 0.03 13.6 0.1 1.7 7.8 0.0 2.5 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus GFO_IDH_MocA PF01408.17 gi|284172734|ref|YP_003406116.1| - 6.4e-19 68.6 0.1 1.5e-18 67.4 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold CaATP_NAI PF12515.3 gi|284172734|ref|YP_003406116.1| - 0.12 11.8 0.2 0.34 10.4 0.2 1.7 1 0 0 1 1 1 0 Ca2+-ATPase N terminal autoinhibitory domain AP_endonuc_2 PF01261.19 gi|284172735|ref|YP_003406117.1| - 9.9e-23 80.5 4.1 9.9e-23 80.5 2.9 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF2976 PF11190.3 gi|284172736|ref|YP_003406118.1| - 0.008 15.6 1.4 0.0093 15.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2976) Transmemb_17 PF09799.4 gi|284172736|ref|YP_003406118.1| - 0.013 15.8 2.4 0.015 15.6 1.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein DUF2628 PF10947.3 gi|284172736|ref|YP_003406118.1| - 0.033 13.9 3.7 0.039 13.7 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF4131 PF13567.1 gi|284172736|ref|YP_003406118.1| - 0.034 13.5 3.9 0.036 13.4 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) CbiM PF01891.11 gi|284172736|ref|YP_003406118.1| - 0.041 13.4 3.2 0.05 13.1 2.2 1.1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region DUF1129 PF06570.6 gi|284172736|ref|YP_003406118.1| - 0.044 13.0 1.4 0.046 13.0 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Exosortase_EpsH PF09721.5 gi|284172736|ref|YP_003406118.1| - 0.05 12.7 5.1 0.06 12.5 3.6 1.0 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) DUF2207 PF09972.4 gi|284172736|ref|YP_003406118.1| - 0.1 11.1 2.8 0.11 11.0 1.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.22 gi|284172737|ref|YP_003406119.1| - 1.9e-28 99.4 0.0 2.5e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284172737|ref|YP_003406119.1| - 1.2e-15 57.6 0.2 2.1e-15 56.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284172737|ref|YP_003406119.1| - 9.4e-08 32.3 0.1 0.0002 21.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|284172737|ref|YP_003406119.1| - 0.00035 20.7 1.6 0.0067 16.5 1.1 2.2 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|284172737|ref|YP_003406119.1| - 0.039 12.8 0.0 0.049 12.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.1 gi|284172737|ref|YP_003406119.1| - 0.048 13.1 0.1 0.086 12.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|284172737|ref|YP_003406119.1| - 0.06 13.3 0.2 0.11 12.4 0.2 1.5 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.4 gi|284172737|ref|YP_003406119.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation KaiC PF06745.8 gi|284172737|ref|YP_003406119.1| - 0.17 10.9 0.0 0.55 9.3 0.0 1.7 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.22 gi|284172738|ref|YP_003406120.1| - 3.7e-22 79.1 0.0 5.2e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|284172738|ref|YP_003406120.1| - 6.7e-20 71.2 0.9 1.7e-19 69.9 0.4 1.8 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|284172738|ref|YP_003406120.1| - 7.7e-09 35.9 1.5 6.3e-08 32.9 0.2 2.1 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|284172738|ref|YP_003406120.1| - 4.1e-05 23.0 0.0 0.00011 21.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|284172738|ref|YP_003406120.1| - 0.00028 21.0 0.9 0.011 15.8 0.7 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|284172738|ref|YP_003406120.1| - 0.00036 19.8 0.1 0.21 10.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|284172738|ref|YP_003406120.1| - 0.00059 19.8 0.4 0.0014 18.6 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|284172738|ref|YP_003406120.1| - 0.0076 15.7 0.0 0.093 12.1 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain ABC_ATPase PF09818.4 gi|284172738|ref|YP_003406120.1| - 0.014 13.9 0.1 0.042 12.4 0.1 1.7 1 1 0 1 1 1 0 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|284172738|ref|YP_003406120.1| - 0.014 14.4 0.0 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|284172738|ref|YP_003406120.1| - 0.023 14.2 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|284172738|ref|YP_003406120.1| - 0.045 13.4 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|284172738|ref|YP_003406120.1| - 0.051 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|284172738|ref|YP_003406120.1| - 0.093 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|284172738|ref|YP_003406120.1| - 0.14 11.8 0.2 0.5 10.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.17 gi|284172739|ref|YP_003406121.1| - 1.2e-26 93.4 13.2 1.2e-26 93.4 9.2 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Chlorosome_CsmC PF11098.3 gi|284172739|ref|YP_003406121.1| - 0.039 13.6 0.2 0.077 12.7 0.1 1.5 1 0 0 1 1 1 0 Chlorosome envelope protein C BPD_transp_1 PF00528.17 gi|284172740|ref|YP_003406122.1| - 8.1e-36 123.2 11.4 8.1e-36 123.2 7.9 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.9 gi|284172740|ref|YP_003406122.1| - 0.16 12.3 0.3 0.16 12.3 0.2 2.8 4 0 0 4 4 4 0 Renin receptor-like protein SBP_bac_5 PF00496.17 gi|284172741|ref|YP_003406123.1| - 4.4e-45 154.1 2.6 5.9e-45 153.7 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|284172741|ref|YP_003406123.1| - 0.0015 18.3 2.7 0.0029 17.4 1.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.17 gi|284172742|ref|YP_003406124.1| - 1e-21 77.6 0.0 1.8e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|284172742|ref|YP_003406124.1| - 4.8e-07 29.5 0.2 9.4e-07 28.6 0.1 1.6 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|284172742|ref|YP_003406124.1| - 7.4e-06 25.8 0.0 3.1e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284172742|ref|YP_003406124.1| - 9.9e-06 24.8 0.0 1.8e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|284172742|ref|YP_003406124.1| - 0.00041 20.3 0.1 0.00071 19.5 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|284172742|ref|YP_003406124.1| - 0.011 16.0 0.1 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|284172742|ref|YP_003406124.1| - 0.011 16.2 0.0 0.029 14.8 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain UDPG_MGDP_dh_N PF03721.9 gi|284172742|ref|YP_003406124.1| - 0.012 15.0 0.0 0.021 14.1 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain G6PD_N PF00479.17 gi|284172742|ref|YP_003406124.1| - 0.061 13.5 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|284172742|ref|YP_003406124.1| - 0.062 12.9 0.0 0.15 11.7 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|284172742|ref|YP_003406124.1| - 0.08 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain IlvN PF07991.7 gi|284172742|ref|YP_003406124.1| - 0.083 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain IclR PF01614.13 gi|284172743|ref|YP_003406125.1| - 4.1e-34 117.0 0.1 8.3e-34 116.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172743|ref|YP_003406125.1| - 1.7e-09 37.0 0.0 3e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284172743|ref|YP_003406125.1| - 2.8e-05 23.8 0.0 6e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284172743|ref|YP_003406125.1| - 0.00015 21.3 0.1 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284172743|ref|YP_003406125.1| - 0.00047 19.7 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|284172743|ref|YP_003406125.1| - 0.00072 19.0 0.0 0.0025 17.3 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284172743|ref|YP_003406125.1| - 0.001 18.7 0.1 0.01 15.5 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|284172743|ref|YP_003406125.1| - 0.002 18.4 0.1 0.0052 17.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|284172743|ref|YP_003406125.1| - 0.0044 17.1 0.1 0.011 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|284172743|ref|YP_003406125.1| - 0.0047 16.5 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|284172743|ref|YP_003406125.1| - 0.0053 16.1 0.0 0.0087 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DinB_2 PF12867.2 gi|284172743|ref|YP_003406125.1| - 0.0058 16.9 0.0 0.69 10.2 0.0 2.3 2 0 0 2 2 2 1 DinB superfamily MarR PF01047.17 gi|284172743|ref|YP_003406125.1| - 0.0063 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|284172743|ref|YP_003406125.1| - 0.0077 16.1 0.1 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GerE PF00196.14 gi|284172743|ref|YP_003406125.1| - 0.032 13.5 0.1 0.057 12.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SpoIIID PF12116.3 gi|284172743|ref|YP_003406125.1| - 0.044 13.7 0.3 0.092 12.6 0.2 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D Rrf2 PF02082.15 gi|284172743|ref|YP_003406125.1| - 0.074 13.1 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator Usp PF00582.21 gi|284172744|ref|YP_003406126.1| - 1.9e-09 37.8 0.1 2.8e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family HutP PF09021.6 gi|284172744|ref|YP_003406126.1| - 0.012 15.8 0.1 0.014 15.6 0.1 1.2 1 0 0 1 1 1 0 HutP Glyco_hydro_2_N PF02837.13 gi|284172745|ref|YP_003406127.1| - 3.7e-13 49.3 0.0 8.9e-13 48.1 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|284172745|ref|YP_003406127.1| - 4.8e-06 26.9 0.3 4.8e-06 26.9 0.2 2.2 3 0 0 3 3 3 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.12 gi|284172745|ref|YP_003406127.1| - 5.2e-05 22.2 0.0 0.0001 21.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain UxuA PF03786.8 gi|284172746|ref|YP_003406128.1| - 6.8e-81 271.5 0.0 3.9e-61 206.5 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|284172746|ref|YP_003406128.1| - 2.2e-15 56.5 0.0 3.7e-15 55.7 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Cellulase PF00150.13 gi|284172747|ref|YP_003406129.1| - 4.4e-18 65.4 0.4 6.5e-18 64.9 0.3 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Cellulase-like PF12876.2 gi|284172747|ref|YP_003406129.1| - 5.7e-06 26.6 0.0 1.2e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-binding cellulase-like Glyco_hydro_cc PF11790.3 gi|284172747|ref|YP_003406129.1| - 0.00018 21.0 0.0 0.00082 18.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core Glyco_hydro_42 PF02449.10 gi|284172747|ref|YP_003406129.1| - 0.001 18.2 0.1 0.0019 17.3 0.0 1.4 1 1 0 1 1 1 1 Beta-galactosidase Toxin_57 PF15535.1 gi|284172747|ref|YP_003406129.1| - 0.043 13.8 0.3 0.52 10.4 0.2 2.6 2 1 0 2 2 2 0 Putative toxin 57 Glyco_hydro_35 PF01301.14 gi|284172747|ref|YP_003406129.1| - 0.068 12.5 0.0 0.18 11.0 0.0 1.5 1 1 0 2 2 2 0 Glycosyl hydrolases family 35 Glyco_hydro_2_C PF02836.12 gi|284172747|ref|YP_003406129.1| - 0.092 11.6 0.0 0.2 10.5 0.0 1.5 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain Cellulase PF00150.13 gi|284172748|ref|YP_003406130.1| - 3.6e-14 52.6 4.3 7.8e-14 51.5 2.7 1.7 2 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Endotoxin_C PF03944.9 gi|284172748|ref|YP_003406130.1| - 0.0013 18.8 2.0 0.0018 18.4 0.8 1.6 2 0 0 2 2 2 1 delta endotoxin Melibiase PF02065.13 gi|284172749|ref|YP_003406131.1| - 1.1e-25 90.1 0.9 1e-22 80.3 0.4 2.4 1 1 1 2 2 2 1 Melibiase NPCBM_assoc PF10633.4 gi|284172749|ref|YP_003406131.1| - 1.5e-10 40.9 2.3 7.5e-10 38.7 0.3 2.9 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Glyco_hydro_97 PF10566.4 gi|284172749|ref|YP_003406131.1| - 0.00035 19.7 0.0 0.00058 19.0 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase 97 Raffinose_syn PF05691.7 gi|284172749|ref|YP_003406131.1| - 0.00091 16.8 0.0 0.0013 16.3 0.0 1.1 1 0 0 1 1 1 1 Raffinose synthase or seed imbibition protein Sip1 EamA PF00892.15 gi|284172750|ref|YP_003406132.1| - 4.9e-33 113.8 40.6 1.2e-19 70.5 13.3 2.2 2 0 0 2 2 2 2 EamA-like transporter family DUF914 PF06027.7 gi|284172750|ref|YP_003406132.1| - 0.0015 17.4 9.5 0.002 17.0 6.6 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) TPT PF03151.11 gi|284172750|ref|YP_003406132.1| - 0.0056 16.3 25.5 0.0093 15.6 9.3 2.4 2 0 0 2 2 2 2 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|284172750|ref|YP_003406132.1| - 0.011 15.5 2.5 0.011 15.5 1.7 2.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0546 EmrE PF13536.1 gi|284172750|ref|YP_003406132.1| - 0.12 12.6 46.6 0.033 14.3 8.2 4.1 2 2 2 4 4 4 0 Multidrug resistance efflux transporter Usp PF00582.21 gi|284172751|ref|YP_003406133.1| - 3e-22 79.3 1.6 3.4e-22 79.1 1.1 1.0 1 0 0 1 1 1 1 Universal stress protein family Ricin_B_lectin PF00652.17 gi|284172752|ref|YP_003406134.1| - 0.11 12.4 0.2 0.23 11.4 0.2 1.5 1 1 0 1 1 1 0 Ricin-type beta-trefoil lectin domain Glyco_hydro_88 PF07470.8 gi|284172754|ref|YP_003406136.1| - 2.9e-54 184.3 0.0 3.9e-54 183.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Prenyltrans_2 PF13249.1 gi|284172754|ref|YP_003406136.1| - 0.0013 19.1 0.0 0.7 10.3 0.0 3.1 2 1 1 3 3 3 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|284172754|ref|YP_003406136.1| - 0.014 15.3 0.2 5 7.1 0.0 3.0 2 1 1 3 3 3 0 Prenyltransferase-like C5-epim_C PF06662.8 gi|284172754|ref|YP_003406136.1| - 0.025 13.8 0.0 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Shikimate_dh_N PF08501.6 gi|284172755|ref|YP_003406137.1| - 5.8e-26 90.3 0.0 1.2e-25 89.3 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|284172755|ref|YP_003406137.1| - 7.4e-14 52.0 0.0 1e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|284172755|ref|YP_003406137.1| - 0.0014 17.8 0.0 0.0024 17.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|284172755|ref|YP_003406137.1| - 0.0018 18.6 0.4 0.0039 17.5 0.2 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|284172755|ref|YP_003406137.1| - 0.0019 17.5 0.1 0.003 16.9 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|284172755|ref|YP_003406137.1| - 0.011 15.9 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding B12-binding PF02310.14 gi|284172755|ref|YP_003406137.1| - 0.058 13.2 0.6 0.66 9.8 0.0 2.4 2 1 0 2 2 2 0 B12 binding domain NAD_binding_2 PF03446.10 gi|284172755|ref|YP_003406137.1| - 0.067 13.0 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase THF_DHG_CYH_C PF02882.14 gi|284172755|ref|YP_003406137.1| - 0.12 11.4 0.0 0.22 10.6 0.0 1.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF2083 PF09856.4 gi|284172756|ref|YP_003406138.1| - 0.11 12.1 0.0 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Predicted transcriptional regulator (DUF2083) FAA_hydrolase PF01557.13 gi|284172757|ref|YP_003406139.1| - 3.5e-51 173.7 0.0 4.4e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactate_perm PF02652.9 gi|284172758|ref|YP_003406140.1| - 2.7e-98 329.7 39.0 5.1e-97 325.5 27.0 2.3 1 1 0 1 1 1 1 L-lactate permease DUF162 PF02589.10 gi|284172759|ref|YP_003406141.1| - 1.6e-20 73.3 0.0 4.6e-20 71.9 0.0 1.6 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DUF162 PF02589.10 gi|284172760|ref|YP_003406142.1| - 1.4e-40 138.8 0.6 2.7e-40 137.8 0.4 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|284172760|ref|YP_003406142.1| - 1.2e-08 34.8 4.9 2.2e-08 33.9 3.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|284172760|ref|YP_003406142.1| - 1.5e-07 31.7 5.2 4.8e-05 23.7 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|284172760|ref|YP_003406142.1| - 1.9e-07 30.7 1.7 0.0018 18.0 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|284172760|ref|YP_003406142.1| - 3.9e-06 27.0 3.8 8.1e-06 26.1 2.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284172760|ref|YP_003406142.1| - 5.4e-05 23.4 7.1 0.00012 22.3 4.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|284172760|ref|YP_003406142.1| - 0.0002 21.5 10.4 0.0027 17.9 7.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284172760|ref|YP_003406142.1| - 0.00092 18.7 13.1 0.0029 17.1 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|284172760|ref|YP_003406142.1| - 0.00092 19.0 10.3 0.0052 16.6 7.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284172760|ref|YP_003406142.1| - 0.0015 18.3 10.2 0.026 14.4 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|284172760|ref|YP_003406142.1| - 0.016 14.8 1.7 0.049 13.2 0.0 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|284172760|ref|YP_003406142.1| - 0.036 13.9 12.6 0.11 12.3 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|284172760|ref|YP_003406142.1| - 0.043 14.1 15.5 0.27 11.6 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|284172760|ref|YP_003406142.1| - 0.48 11.1 17.0 0.12 13.0 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|284172760|ref|YP_003406142.1| - 9.2 7.0 15.8 3.3 8.5 3.1 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain FAD-oxidase_C PF02913.14 gi|284172761|ref|YP_003406143.1| - 5.6e-59 199.4 0.1 1.1e-58 198.5 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|284172761|ref|YP_003406143.1| - 3.5e-38 130.2 0.3 6.7e-38 129.2 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|284172761|ref|YP_003406143.1| - 1.9e-09 37.7 5.8 3.7e-09 36.8 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284172761|ref|YP_003406143.1| - 2.2e-08 33.9 6.2 4.6e-08 32.9 4.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|284172761|ref|YP_003406143.1| - 1e-06 28.6 0.0 0.032 14.2 0.0 3.0 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_18 PF13746.1 gi|284172761|ref|YP_003406143.1| - 5.9e-06 26.6 2.5 5e-05 23.6 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|284172761|ref|YP_003406143.1| - 0.00082 19.1 3.2 0.032 14.0 0.2 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284172761|ref|YP_003406143.1| - 0.004 17.5 6.1 0.0095 16.2 4.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|284172761|ref|YP_003406143.1| - 0.022 14.6 9.7 0.54 10.2 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284172761|ref|YP_003406143.1| - 0.026 14.3 10.3 0.25 11.1 1.1 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284172761|ref|YP_003406143.1| - 0.035 13.7 13.2 0.22 11.1 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|284172761|ref|YP_003406143.1| - 0.084 13.4 4.1 14 6.3 0.2 3.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|284172761|ref|YP_003406143.1| - 0.093 13.0 10.9 0.4 10.9 1.6 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|284172761|ref|YP_003406143.1| - 0.73 10.3 12.5 0.94 9.9 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Glyoxalase_2 PF12681.2 gi|284172762|ref|YP_003406144.1| - 3.5e-16 59.7 1.5 4.1e-16 59.5 1.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|284172762|ref|YP_003406144.1| - 6.7e-12 45.5 0.8 9.7e-12 44.9 0.6 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|284172762|ref|YP_003406144.1| - 2.7e-10 40.2 0.6 7e-09 35.6 0.4 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|284172762|ref|YP_003406144.1| - 9.2e-05 22.4 0.0 0.18 11.7 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain RHS_repeat PF05593.9 gi|284172762|ref|YP_003406144.1| - 0.0079 16.3 0.0 4.6 7.5 0.0 2.2 2 0 0 2 2 2 2 RHS Repeat Chitin_bind_4 PF00379.18 gi|284172762|ref|YP_003406144.1| - 0.061 13.6 0.4 1.3 9.3 0.1 2.8 2 1 0 2 2 2 0 Insect cuticle protein IclR PF01614.13 gi|284172763|ref|YP_003406145.1| - 5.1e-33 113.5 0.0 1.9e-32 111.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172763|ref|YP_003406145.1| - 1.5e-09 37.2 0.1 5.9e-09 35.3 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284172763|ref|YP_003406145.1| - 1.2e-06 28.0 0.1 2.5e-06 27.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|284172763|ref|YP_003406145.1| - 4.4e-06 26.2 0.0 1.6e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|284172763|ref|YP_003406145.1| - 6.1e-05 22.6 0.2 0.00015 21.4 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|284172763|ref|YP_003406145.1| - 0.00012 21.8 0.0 0.00028 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284172763|ref|YP_003406145.1| - 0.0002 21.2 0.1 0.00046 20.0 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|284172763|ref|YP_003406145.1| - 0.00056 19.5 0.0 0.0018 17.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|284172763|ref|YP_003406145.1| - 0.00057 19.8 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|284172763|ref|YP_003406145.1| - 0.0017 18.6 0.2 0.0082 16.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain GAF_2 PF13185.1 gi|284172763|ref|YP_003406145.1| - 0.017 15.6 0.0 0.032 14.7 0.0 1.7 1 1 0 1 1 1 0 GAF domain B-block_TFIIIC PF04182.7 gi|284172763|ref|YP_003406145.1| - 0.023 14.5 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC LexA_DNA_bind PF01726.11 gi|284172763|ref|YP_003406145.1| - 0.031 13.8 0.0 0.08 12.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain DUF336 PF03928.9 gi|284172763|ref|YP_003406145.1| - 0.031 14.0 0.1 0.23 11.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF336) DUF2203 PF09969.4 gi|284172763|ref|YP_003406145.1| - 0.04 14.1 0.3 3.5 7.8 0.1 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2203) HTH_24 PF13412.1 gi|284172763|ref|YP_003406145.1| - 0.04 13.3 0.0 0.095 12.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PDDEXK_1 PF12705.2 gi|284172763|ref|YP_003406145.1| - 0.075 12.3 0.1 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily HTH_36 PF13730.1 gi|284172763|ref|YP_003406145.1| - 0.08 13.0 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3486 PF11985.3 gi|284172763|ref|YP_003406145.1| - 0.093 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3486) DUF1803 PF08820.5 gi|284172763|ref|YP_003406145.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) HpcH_HpaI PF03328.9 gi|284172764|ref|YP_003406146.1| - 1.7e-08 33.6 0.0 4.2e-08 32.3 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Ring_hydroxyl_A PF00848.14 gi|284172767|ref|YP_003406149.1| - 1.5e-29 103.1 8.6 2.3e-29 102.5 6.0 1.3 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.21 gi|284172767|ref|YP_003406149.1| - 7.7e-20 70.2 0.0 1.6e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|284172767|ref|YP_003406149.1| - 0.0073 16.0 0.0 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain RAMP PF04901.8 gi|284172767|ref|YP_003406149.1| - 1.1 9.0 4.7 2.6 7.8 1.1 2.4 1 1 1 2 2 2 0 Receptor activity modifying family Rep_4 PF05797.6 gi|284172769|ref|YP_003406151.1| - 0.063 11.9 0.1 0.16 10.6 0.1 1.7 1 0 0 1 1 1 0 Yeast trans-acting factor (REP1/REP2) Chorismate_bind PF00425.13 gi|284172770|ref|YP_003406152.1| - 5.6e-99 330.6 0.0 1.8e-98 328.9 0.0 1.7 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|284172770|ref|YP_003406152.1| - 3.3e-15 56.3 0.0 9.1e-15 54.9 0.0 1.8 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|284172771|ref|YP_003406153.1| - 1.7e-44 151.5 0.1 5.1e-44 150.0 0.1 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|284172771|ref|YP_003406153.1| - 2.2e-07 30.5 0.1 4.8e-07 29.4 0.1 1.5 1 1 0 1 1 1 1 Peptidase C26 AstE_AspA PF04952.9 gi|284172772|ref|YP_003406154.1| - 2.2e-38 131.8 0.1 2.6e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Creatininase PF02633.9 gi|284172773|ref|YP_003406155.1| - 2.4e-75 252.6 3.9 2.7e-75 252.4 2.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase THF_DHG_CYH_C PF02882.14 gi|284172774|ref|YP_003406156.1| - 6.5e-67 223.6 1.9 8.2e-67 223.2 1.3 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|284172774|ref|YP_003406156.1| - 8.7e-38 128.9 0.0 1.3e-37 128.3 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GCV_T PF01571.16 gi|284172775|ref|YP_003406157.1| - 7.3e-63 211.7 0.0 1.5e-62 210.7 0.0 1.5 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.19 gi|284172775|ref|YP_003406157.1| - 7.7e-54 182.9 0.2 1.2e-53 182.3 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.6 gi|284172775|ref|YP_003406157.1| - 4.1e-19 68.4 0.0 5.1e-18 64.8 0.0 2.4 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|284172775|ref|YP_003406157.1| - 1.4e-09 38.3 0.1 2e-05 24.7 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|284172775|ref|YP_003406157.1| - 1.9e-05 24.6 0.1 6.3e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|284172775|ref|YP_003406157.1| - 5.9e-05 23.0 0.0 0.0068 16.3 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|284172775|ref|YP_003406157.1| - 6.1e-05 22.8 0.1 0.17 11.6 0.0 2.9 2 0 0 2 2 2 2 FAD-NAD(P)-binding SoxG PF04268.7 gi|284172775|ref|YP_003406157.1| - 0.00031 20.6 0.0 0.0047 16.7 0.0 2.2 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family FAD_binding_2 PF00890.19 gi|284172775|ref|YP_003406157.1| - 0.00034 19.5 0.4 0.001 17.9 0.2 1.8 1 1 1 2 2 2 1 FAD binding domain ApbA PF02558.11 gi|284172775|ref|YP_003406157.1| - 0.00056 19.3 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|284172775|ref|YP_003406157.1| - 0.00059 19.6 0.2 0.001 18.9 0.1 1.3 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.15 gi|284172775|ref|YP_003406157.1| - 0.00068 19.7 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.22 gi|284172775|ref|YP_003406157.1| - 0.0024 18.2 0.2 0.0066 16.8 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.14 gi|284172775|ref|YP_003406157.1| - 0.008 15.3 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Lycopene_cycl PF05834.7 gi|284172775|ref|YP_003406157.1| - 0.019 13.9 0.2 0.041 12.8 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein TrkA_N PF02254.13 gi|284172775|ref|YP_003406157.1| - 0.025 14.5 0.1 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.9 gi|284172775|ref|YP_003406157.1| - 0.28 9.6 0.6 12 4.2 0.2 2.3 2 0 0 2 2 2 0 HI0933-like protein PALP PF00291.20 gi|284172776|ref|YP_003406158.1| - 2.2e-82 276.7 6.5 3.2e-82 276.2 4.5 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|284172776|ref|YP_003406158.1| - 5e-05 22.6 0.4 0.00019 20.7 0.3 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|284172776|ref|YP_003406158.1| - 0.0023 18.2 1.9 0.0024 18.1 0.1 2.0 2 0 0 2 2 2 1 ACT domain BCCT PF02028.12 gi|284172777|ref|YP_003406159.1| - 4e-155 516.7 54.8 4.5e-155 516.5 38.0 1.0 1 0 0 1 1 1 1 BCCT family transporter Ribonuc_L-PSP PF01042.16 gi|284172778|ref|YP_003406160.1| - 3.2e-41 139.8 0.0 3.6e-41 139.7 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|284172778|ref|YP_003406160.1| - 0.0062 16.4 0.0 0.0081 16.0 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease DUF4488 PF14869.1 gi|284172778|ref|YP_003406160.1| - 0.13 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4488) Formyl_trans_N PF00551.14 gi|284172779|ref|YP_003406161.1| - 6.9e-43 146.2 0.0 3.8e-42 143.8 0.0 1.9 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.1 gi|284172779|ref|YP_003406161.1| - 9e-12 44.5 0.2 2.1e-11 43.3 0.1 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|284172779|ref|YP_003406161.1| - 0.0048 17.2 0.3 0.0097 16.2 0.2 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|284172779|ref|YP_003406161.1| - 0.007 15.8 0.8 0.016 14.6 0.2 2.0 2 0 0 2 2 2 1 ACT domain tRNA_SAD PF07973.9 gi|284172780|ref|YP_003406162.1| - 4.1e-13 48.9 0.1 8e-13 48.0 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|284172780|ref|YP_003406162.1| - 1.1e-09 37.1 0.1 1.6e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|284172780|ref|YP_003406162.1| - 4.2e-06 26.3 1.1 1.7e-05 24.4 0.8 2.0 1 0 0 1 1 1 1 DHHA1 domain DUF972 PF06156.8 gi|284172780|ref|YP_003406162.1| - 0.0032 17.8 0.1 0.0057 16.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF972) KorB PF08535.5 gi|284172780|ref|YP_003406162.1| - 0.14 12.3 0.6 0.33 11.1 0.4 1.6 1 0 0 1 1 1 0 KorB domain Lzipper-MIP1 PF14389.1 gi|284172780|ref|YP_003406162.1| - 0.14 12.2 1.3 0.25 11.4 0.9 1.3 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Pterin_bind PF00809.17 gi|284172781|ref|YP_003406163.1| - 4.7e-73 245.0 0.1 8.9e-73 244.1 0.1 1.5 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|284172781|ref|YP_003406163.1| - 3.5e-15 56.5 0.0 6.4e-15 55.6 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|284172781|ref|YP_003406163.1| - 3.3e-09 36.6 0.0 1.5e-08 34.5 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain AAA_23 PF13476.1 gi|284172782|ref|YP_003406164.1| - 3.8e-14 53.5 5.9 3.8e-14 53.5 4.1 3.8 1 1 2 3 3 2 1 AAA domain DUF3584 PF12128.3 gi|284172782|ref|YP_003406164.1| - 1.7e-05 22.4 54.2 0.0023 15.3 17.6 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|284172782|ref|YP_003406164.1| - 0.00022 21.1 24.9 0.00022 21.1 17.3 4.5 1 1 4 5 5 5 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cep57_CLD_2 PF14197.1 gi|284172782|ref|YP_003406164.1| - 0.0021 17.9 10.4 0.0021 17.9 7.2 5.3 3 2 1 4 4 3 1 Centrosome localisation domain of PPC89 TBPIP PF07106.8 gi|284172782|ref|YP_003406164.1| - 0.0023 17.4 8.3 0.0023 17.4 5.7 4.9 2 2 3 5 5 5 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4201 PF13870.1 gi|284172782|ref|YP_003406164.1| - 0.0048 16.3 9.2 0.0048 16.3 6.4 4.2 3 2 2 5 5 4 2 Domain of unknown function (DUF4201) AAA_13 PF13166.1 gi|284172782|ref|YP_003406164.1| - 0.0093 14.4 40.2 0.077 11.4 13.5 2.7 1 1 2 3 3 3 3 AAA domain DivIC PF04977.10 gi|284172782|ref|YP_003406164.1| - 0.0097 15.3 65.3 0.018 14.4 4.3 8.1 4 3 2 8 8 8 3 Septum formation initiator AAA_29 PF13555.1 gi|284172782|ref|YP_003406164.1| - 0.012 15.1 0.1 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Spc7 PF08317.6 gi|284172782|ref|YP_003406164.1| - 0.78 8.3 57.8 0.088 11.4 11.4 4.0 2 2 1 3 3 3 0 Spc7 kinetochore protein GAS PF13851.1 gi|284172782|ref|YP_003406164.1| - 1 8.5 56.4 0.12 11.5 5.1 4.0 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|284172782|ref|YP_003406164.1| - 1.3 8.5 77.2 0.056 13.0 11.3 4.3 1 1 2 3 3 3 0 IncA protein AAA_27 PF13514.1 gi|284172782|ref|YP_003406164.1| - 1.6 6.3 68.6 0.85 7.2 23.1 2.6 2 1 1 3 3 3 0 AAA domain Reo_sigmaC PF04582.7 gi|284172782|ref|YP_003406164.1| - 2 7.5 12.1 3.7 6.6 2.0 3.2 2 2 2 4 4 4 0 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|284172782|ref|YP_003406164.1| - 2.4 8.1 58.1 0.47 10.4 3.2 4.9 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain MAD PF05557.8 gi|284172782|ref|YP_003406164.1| - 3.1 5.7 55.4 2.4 6.1 21.5 2.3 2 0 0 2 2 2 0 Mitotic checkpoint protein Baculo_PEP_C PF04513.7 gi|284172782|ref|YP_003406164.1| - 4.6 7.0 18.3 2.1 8.1 1.0 4.7 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|284172782|ref|YP_003406164.1| - 4.7 7.5 23.4 3.2 8.0 0.7 5.9 3 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|284172782|ref|YP_003406164.1| - 8.8 6.5 31.8 2.7 8.1 0.4 5.4 2 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 zf-dskA_traR PF01258.12 gi|284172783|ref|YP_003406165.1| - 0.05 13.3 0.9 0.13 12.0 0.6 1.6 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger HTH_10 PF04967.7 gi|284172784|ref|YP_003406166.1| - 4e-15 55.1 0.0 6.4e-15 54.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain IF2_N PF04760.10 gi|284172784|ref|YP_003406166.1| - 0.13 11.9 0.0 0.53 9.9 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region AFOR_C PF01314.13 gi|284172786|ref|YP_003406168.1| - 3.1e-122 407.9 2.7 3.7e-122 407.6 1.9 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284172786|ref|YP_003406168.1| - 6.1e-77 257.5 0.1 9.2e-77 256.9 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PPDK_N PF01326.14 gi|284172788|ref|YP_003406170.1| - 2e-104 349.1 5.3 2e-104 349.1 3.6 1.5 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|284172788|ref|YP_003406170.1| - 2.5e-82 276.0 0.0 3.5e-82 275.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|284172788|ref|YP_003406170.1| - 8.9e-29 98.8 1.8 2.6e-28 97.4 1.3 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|284172788|ref|YP_003406170.1| - 0.0062 15.4 0.0 0.014 14.2 0.0 1.5 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PEPcase PF00311.12 gi|284172789|ref|YP_003406171.1| - 6.8e-242 804.7 0.0 8.9e-242 804.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|284172789|ref|YP_003406171.1| - 1.3e-05 23.7 0.0 2.4e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.3 gi|284172789|ref|YP_003406171.1| - 0.013 15.0 1.0 0.051 13.0 0.1 2.4 2 0 0 2 2 2 0 Transcriptional activator TraM Peptidase_M16 PF00675.15 gi|284172789|ref|YP_003406171.1| - 0.029 14.1 1.5 0.063 13.0 0.2 2.2 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) ADH_N PF08240.7 gi|284172791|ref|YP_003406173.1| - 5.6e-28 96.8 1.7 2.4e-27 94.8 1.1 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|284172791|ref|YP_003406173.1| - 6.4e-11 41.9 0.0 1.1e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|284172791|ref|YP_003406173.1| - 5.9e-08 32.2 1.1 1.6e-07 30.7 0.8 1.9 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|284172791|ref|YP_003406173.1| - 9.9e-05 22.8 0.0 0.00028 21.4 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Shikimate_DH PF01488.15 gi|284172791|ref|YP_003406173.1| - 0.0017 18.4 0.0 0.033 14.2 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|284172791|ref|YP_003406173.1| - 0.012 14.0 0.1 0.04 12.4 0.0 1.7 2 0 0 2 2 2 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|284172791|ref|YP_003406173.1| - 0.15 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase zf-DBF PF07535.7 gi|284172791|ref|YP_003406173.1| - 0.88 9.2 3.8 1.7 8.3 2.7 1.4 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.14 gi|284172792|ref|YP_003406174.1| - 2.3e-50 170.5 0.0 3e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|284172792|ref|YP_003406174.1| - 2.1e-27 94.6 0.0 4.3e-27 93.6 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain T2SE PF00437.15 gi|284172792|ref|YP_003406174.1| - 0.0011 17.8 0.1 0.0017 17.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|284172792|ref|YP_003406174.1| - 0.0012 18.9 0.0 0.0023 18.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284172792|ref|YP_003406174.1| - 0.0013 18.7 0.1 0.0026 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|284172792|ref|YP_003406174.1| - 0.0016 17.9 0.0 0.004 16.6 0.0 1.7 1 0 0 1 1 1 1 AAA-like domain GTP_EFTU PF00009.22 gi|284172792|ref|YP_003406174.1| - 0.003 17.0 0.0 0.62 9.4 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.1 gi|284172792|ref|YP_003406174.1| - 0.0046 16.9 0.1 0.064 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|284172792|ref|YP_003406174.1| - 0.008 15.9 0.2 0.019 14.7 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|284172792|ref|YP_003406174.1| - 0.0086 15.8 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|284172792|ref|YP_003406174.1| - 0.0089 15.9 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|284172792|ref|YP_003406174.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|284172792|ref|YP_003406174.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|284172792|ref|YP_003406174.1| - 0.024 15.4 0.1 0.054 14.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|284172792|ref|YP_003406174.1| - 0.024 14.3 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|284172792|ref|YP_003406174.1| - 0.034 14.1 0.0 0.062 13.2 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|284172792|ref|YP_003406174.1| - 0.035 14.0 0.0 0.058 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284172792|ref|YP_003406174.1| - 0.036 14.3 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|284172792|ref|YP_003406174.1| - 0.038 13.0 0.0 0.078 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|284172792|ref|YP_003406174.1| - 0.041 14.1 0.1 0.065 13.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|284172792|ref|YP_003406174.1| - 0.059 13.6 0.0 0.12 12.6 0.0 1.5 2 0 0 2 2 1 0 ABC transporter TrwB_AAD_bind PF10412.4 gi|284172792|ref|YP_003406174.1| - 0.07 11.7 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Guanylate_kin PF00625.16 gi|284172792|ref|YP_003406174.1| - 0.088 12.2 0.1 0.21 11.0 0.0 1.5 2 0 0 2 2 2 0 Guanylate kinase AAA_29 PF13555.1 gi|284172792|ref|YP_003406174.1| - 0.1 12.1 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|284172792|ref|YP_003406174.1| - 0.16 11.4 0.0 0.73 9.3 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ArgK PF03308.11 gi|284172792|ref|YP_003406174.1| - 0.16 10.6 0.1 6.9 5.3 0.0 2.4 3 0 0 3 3 3 0 ArgK protein KCl_Cotrans_1 PF03522.10 gi|284172792|ref|YP_003406174.1| - 2.5 7.7 6.0 0.56 9.7 0.5 2.5 2 0 0 2 2 2 0 K-Cl Co-transporter type 1 (KCC1) EamA PF00892.15 gi|284172793|ref|YP_003406175.1| - 4.6e-11 42.8 15.4 5.6e-11 42.5 10.7 1.1 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|284172793|ref|YP_003406175.1| - 0.019 14.6 12.4 0.018 14.6 8.0 1.4 1 1 0 1 1 1 0 Triose-phosphate Transporter family Mg_trans_NIPA PF05653.9 gi|284172793|ref|YP_003406175.1| - 0.032 13.1 5.4 0.028 13.3 2.9 1.4 1 1 0 1 1 1 0 Magnesium transporter NIPA Methyltransf_17 PF12692.2 gi|284172793|ref|YP_003406175.1| - 0.042 13.5 0.1 0.12 11.9 0.0 1.7 1 1 1 2 2 2 0 S-adenosyl-L-methionine methyltransferase Ring_hydroxyl_A PF00848.14 gi|284172794|ref|YP_003406176.1| - 2.6e-30 105.6 8.2 4e-30 105.0 5.7 1.3 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.21 gi|284172794|ref|YP_003406176.1| - 0.00054 19.4 0.0 0.0012 18.3 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain RAMP PF04901.8 gi|284172794|ref|YP_003406176.1| - 1 9.1 4.7 2 8.1 1.0 2.2 1 1 1 2 2 2 0 Receptor activity modifying family IclR PF01614.13 gi|284172795|ref|YP_003406177.1| - 9.6e-29 99.6 0.0 1.5e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172795|ref|YP_003406177.1| - 1.2e-08 34.4 0.2 3.5e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|284172795|ref|YP_003406177.1| - 4.2e-05 23.2 0.0 0.00014 21.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284172795|ref|YP_003406177.1| - 0.00031 20.3 0.0 0.00074 19.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|284172795|ref|YP_003406177.1| - 0.0011 18.5 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|284172795|ref|YP_003406177.1| - 0.0038 16.8 0.0 0.0078 15.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|284172795|ref|YP_003406177.1| - 0.0044 16.6 0.0 0.0071 16.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|284172795|ref|YP_003406177.1| - 0.0053 16.1 0.0 0.0093 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.1 gi|284172795|ref|YP_003406177.1| - 0.0076 16.4 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284172795|ref|YP_003406177.1| - 0.024 14.5 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_X PF05155.10 gi|284172795|ref|YP_003406177.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Phage X family Fe-ADH PF00465.14 gi|284172797|ref|YP_003406179.1| - 2.1e-113 378.7 0.1 2.3e-113 378.5 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|284172797|ref|YP_003406179.1| - 4.1e-16 59.0 0.0 1.8e-12 47.1 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase zf-HC2 PF13490.1 gi|284172797|ref|YP_003406179.1| - 0.25 11.3 1.0 0.69 9.9 0.0 2.3 2 0 0 2 2 2 0 Putative zinc-finger Aldedh PF00171.17 gi|284172798|ref|YP_003406180.1| - 2.7e-168 560.0 0.0 3.1e-168 559.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|284172798|ref|YP_003406180.1| - 0.013 14.7 0.0 0.92 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) BCCT PF02028.12 gi|284172799|ref|YP_003406181.1| - 3.8e-105 351.9 42.2 4.4e-105 351.7 29.2 1.0 1 0 0 1 1 1 1 BCCT family transporter HTH_AraC PF00165.18 gi|284172799|ref|YP_003406181.1| - 0.052 13.4 0.0 2 8.3 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family EamA PF00892.15 gi|284172800|ref|YP_003406182.1| - 7.5e-14 51.8 13.3 8.8e-14 51.6 9.2 1.1 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.9 gi|284172800|ref|YP_003406182.1| - 2.8e-05 23.2 7.4 4.1e-05 22.7 5.0 1.4 1 1 0 1 1 1 1 Magnesium transporter NIPA UAA PF08449.6 gi|284172800|ref|YP_003406182.1| - 0.22 10.4 3.9 0.26 10.1 2.7 1.2 1 0 0 1 1 1 0 UAA transporter family DUF4134 PF13572.1 gi|284172800|ref|YP_003406182.1| - 0.42 10.7 8.7 0.87 9.7 6.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) DUF3624 PF12292.3 gi|284172800|ref|YP_003406182.1| - 0.71 10.3 5.4 1.6 9.2 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) UPF0546 PF10639.4 gi|284172800|ref|YP_003406182.1| - 1.3 8.8 5.1 3.2 7.6 3.5 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 Ring_hydroxyl_A PF00848.14 gi|284172803|ref|YP_003406185.1| - 1.1e-29 103.5 8.0 1.6e-29 103.0 5.5 1.2 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.21 gi|284172803|ref|YP_003406185.1| - 8e-20 70.2 0.0 1.5e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|284172803|ref|YP_003406185.1| - 0.0098 15.6 0.0 0.028 14.1 0.0 1.8 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain RAMP PF04901.8 gi|284172803|ref|YP_003406185.1| - 1.1 9.0 4.7 2.5 7.8 1.0 2.4 1 1 1 2 2 2 0 Receptor activity modifying family DUF336 PF03928.9 gi|284172804|ref|YP_003406186.1| - 7.4e-36 122.8 0.0 8.4e-36 122.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF336) DAO PF01266.19 gi|284172805|ref|YP_003406187.1| - 2.8e-68 230.4 0.0 5.2e-68 229.5 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|284172805|ref|YP_003406187.1| - 1.2e-64 217.5 0.1 1.9e-64 216.9 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|284172805|ref|YP_003406187.1| - 2.6e-16 59.3 0.0 8.3e-16 57.7 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|284172805|ref|YP_003406187.1| - 6.6e-08 32.8 0.2 1.7e-05 25.0 0.1 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase SoxG PF04268.7 gi|284172805|ref|YP_003406187.1| - 1.4e-07 31.4 0.0 3.1e-07 30.3 0.0 1.6 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family FAD_binding_2 PF00890.19 gi|284172805|ref|YP_003406187.1| - 2.6e-06 26.5 0.1 7.3e-06 25.0 0.0 1.7 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|284172805|ref|YP_003406187.1| - 2.7e-05 24.1 0.2 0.00014 21.7 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|284172805|ref|YP_003406187.1| - 6.4e-05 23.2 0.2 0.0019 18.5 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|284172805|ref|YP_003406187.1| - 0.0065 16.2 0.1 0.014 15.2 0.1 1.5 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.1 gi|284172805|ref|YP_003406187.1| - 0.0066 16.2 0.1 0.35 10.6 0.0 2.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding GMC_oxred_N PF00732.14 gi|284172805|ref|YP_003406187.1| - 0.011 14.9 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase HI0933_like PF03486.9 gi|284172805|ref|YP_003406187.1| - 0.016 13.7 0.1 0.16 10.4 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein TrkA_N PF02254.13 gi|284172805|ref|YP_003406187.1| - 0.022 14.7 0.4 0.059 13.3 0.0 2.0 2 0 0 2 2 1 0 TrkA-N domain ApbA PF02558.11 gi|284172805|ref|YP_003406187.1| - 0.035 13.5 0.1 0.067 12.6 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|284172805|ref|YP_003406187.1| - 0.037 13.8 0.0 0.32 10.8 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|284172805|ref|YP_003406187.1| - 0.051 12.6 0.1 3.4 6.7 0.0 2.4 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.7 gi|284172805|ref|YP_003406187.1| - 0.054 12.4 1.1 0.099 11.5 0.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein AFOR_C PF01314.13 gi|284172806|ref|YP_003406188.1| - 5.4e-99 331.4 0.1 9.1e-99 330.7 0.0 1.4 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|284172806|ref|YP_003406188.1| - 8.2e-64 214.6 0.0 1.3e-63 214.0 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Complex1_51K PF01512.12 gi|284172809|ref|YP_003406191.1| - 2.4e-15 56.5 0.0 3.7e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|284172809|ref|YP_003406191.1| - 9.2e-08 31.1 0.0 2.7e-07 29.6 0.0 1.9 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|284172809|ref|YP_003406191.1| - 0.026 14.4 0.0 0.084 12.7 0.0 1.9 1 0 0 1 1 1 0 SLBB domain Molybdopterin PF00384.17 gi|284172810|ref|YP_003406192.1| - 5.7e-85 285.6 0.0 7e-85 285.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|284172810|ref|YP_003406192.1| - 5e-32 109.9 0.0 1e-31 108.9 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|284172810|ref|YP_003406192.1| - 1.1e-27 95.6 0.4 2.4e-27 94.5 0.3 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|284172810|ref|YP_003406192.1| - 3.4e-15 54.9 0.7 1.2e-14 53.1 0.5 2.1 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|284172810|ref|YP_003406192.1| - 4.2e-10 39.2 0.1 1.6e-09 37.4 0.1 2.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.1 gi|284172810|ref|YP_003406192.1| - 4e-08 32.9 8.4 4e-08 32.9 5.8 3.0 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|284172810|ref|YP_003406192.1| - 5.8e-07 29.7 9.3 5.8e-07 29.7 6.5 3.7 3 2 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|284172810|ref|YP_003406192.1| - 1.4e-06 27.6 22.9 1.5e-05 24.3 1.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|284172810|ref|YP_003406192.1| - 1.6e-06 27.7 12.4 9.2e-05 22.1 1.4 4.2 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|284172810|ref|YP_003406192.1| - 3.4e-06 26.7 10.0 3.4e-06 26.7 6.9 3.3 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|284172810|ref|YP_003406192.1| - 5.5e-06 26.3 7.9 5.5e-06 26.3 5.5 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|284172810|ref|YP_003406192.1| - 8.2e-05 23.2 9.4 0.00099 19.8 0.2 4.0 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|284172810|ref|YP_003406192.1| - 9.6e-05 22.5 20.7 9.7e-05 22.5 8.9 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|284172810|ref|YP_003406192.1| - 0.00064 20.2 9.8 0.089 13.3 0.5 4.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|284172810|ref|YP_003406192.1| - 0.0075 16.1 2.7 0.0075 16.1 1.8 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain CDC48_N PF02359.13 gi|284172810|ref|YP_003406192.1| - 0.066 13.1 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain NIPSNAP PF07978.8 gi|284172810|ref|YP_003406192.1| - 0.18 11.7 0.0 0.51 10.3 0.0 1.7 1 0 0 1 1 1 0 NIPSNAP Fer4_18 PF13746.1 gi|284172810|ref|YP_003406192.1| - 0.18 12.2 22.0 78 3.7 13.2 3.3 2 1 0 2 2 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|284172810|ref|YP_003406192.1| - 1.4 9.3 11.8 6.6 7.2 1.9 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ribonuc_L-PSP PF01042.16 gi|284172812|ref|YP_003406194.1| - 3.4e-40 136.5 0.0 3.8e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|284172812|ref|YP_003406194.1| - 0.0068 16.3 0.0 0.0076 16.1 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease SHMT PF00464.14 gi|284172813|ref|YP_003406195.1| - 3.8e-157 522.7 0.1 4.6e-157 522.5 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|284172813|ref|YP_003406195.1| - 5.7e-09 35.3 0.0 9.7e-09 34.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|284172813|ref|YP_003406195.1| - 8.3e-05 21.8 0.0 0.00034 19.8 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|284172813|ref|YP_003406195.1| - 0.00015 20.9 0.5 0.00023 20.3 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ATP-synt_F PF01990.12 gi|284172813|ref|YP_003406195.1| - 0.091 13.1 0.0 0.28 11.5 0.0 1.8 2 0 0 2 2 2 0 ATP synthase (F/14-kDa) subunit BCCT PF02028.12 gi|284172814|ref|YP_003406196.1| - 1e-158 528.5 47.5 1.3e-158 528.2 32.9 1.0 1 0 0 1 1 1 1 BCCT family transporter BCCT PF02028.12 gi|284172815|ref|YP_003406197.1| - 2.5e-153 510.8 41.8 3.1e-153 510.5 28.9 1.0 1 0 0 1 1 1 1 BCCT family transporter BCCT PF02028.12 gi|284172817|ref|YP_003406199.1| - 1.9e-142 474.9 42.8 2.2e-142 474.7 29.7 1.0 1 0 0 1 1 1 1 BCCT family transporter DUF2270 PF10028.4 gi|284172817|ref|YP_003406199.1| - 0.015 14.7 0.2 0.036 13.5 0.2 1.6 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2270) BPD_transp_1 PF00528.17 gi|284172818|ref|YP_003406200.1| - 1.6e-22 79.8 17.9 2.3e-22 79.4 12.4 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|284172819|ref|YP_003406201.1| - 1.2e-36 126.0 0.0 2.2e-36 125.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|284172819|ref|YP_003406201.1| - 3.2e-10 40.4 0.0 6.4e-06 26.3 0.0 2.3 1 1 1 2 2 2 2 AAA domain CBS PF00571.23 gi|284172819|ref|YP_003406201.1| - 6.2e-09 35.5 0.2 2.5e-08 33.5 0.0 2.1 2 0 0 2 2 2 1 CBS domain DUF258 PF03193.11 gi|284172819|ref|YP_003406201.1| - 0.00041 19.5 0.0 0.00081 18.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|284172819|ref|YP_003406201.1| - 0.00071 19.7 0.1 0.0014 18.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|284172819|ref|YP_003406201.1| - 0.0014 18.6 0.0 0.0024 17.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|284172819|ref|YP_003406201.1| - 0.002 17.8 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|284172819|ref|YP_003406201.1| - 0.0021 18.2 0.1 0.013 15.6 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|284172819|ref|YP_003406201.1| - 0.0055 17.5 0.3 0.015 16.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|284172819|ref|YP_003406201.1| - 0.0059 16.0 0.1 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|284172819|ref|YP_003406201.1| - 0.0063 16.6 0.0 0.015 15.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_10 PF12846.2 gi|284172819|ref|YP_003406201.1| - 0.0087 15.5 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|284172819|ref|YP_003406201.1| - 0.0099 15.7 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|284172819|ref|YP_003406201.1| - 0.02 14.4 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|284172819|ref|YP_003406201.1| - 0.024 13.3 0.0 0.039 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|284172819|ref|YP_003406201.1| - 0.024 14.3 0.0 0.049 13.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|284172819|ref|YP_003406201.1| - 0.052 13.0 0.0 0.077 12.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|284172819|ref|YP_003406201.1| - 0.059 13.0 0.0 0.15 11.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|284172819|ref|YP_003406201.1| - 0.087 13.1 0.1 0.16 12.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|284172819|ref|YP_003406201.1| - 0.09 13.0 0.0 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|284172819|ref|YP_003406201.1| - 0.096 11.8 0.0 5.5 6.1 0.0 2.2 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|284172819|ref|YP_003406201.1| - 0.099 12.0 0.3 0.24 10.7 0.2 1.6 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|284172819|ref|YP_003406201.1| - 0.11 11.3 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|284172819|ref|YP_003406201.1| - 0.12 12.3 0.2 0.26 11.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|284172819|ref|YP_003406201.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin BPD_transp_1 PF00528.17 gi|284172820|ref|YP_003406202.1| - 3.5e-19 69.0 17.0 4.6e-19 68.6 11.8 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component OpuAC PF04069.7 gi|284172821|ref|YP_003406203.1| - 8.8e-47 159.6 0.0 1e-46 159.4 0.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system IclR PF01614.13 gi|284172822|ref|YP_003406204.1| - 4.1e-28 97.6 0.0 1.1e-27 96.2 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172822|ref|YP_003406204.1| - 2.2e-07 30.3 0.0 1.5e-06 27.6 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|284172822|ref|YP_003406204.1| - 5e-06 26.0 0.1 1.9e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|284172822|ref|YP_003406204.1| - 2e-05 24.2 0.1 4.7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|284172822|ref|YP_003406204.1| - 0.00022 20.8 0.1 0.00053 19.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|284172822|ref|YP_003406204.1| - 0.00036 20.1 0.1 0.0014 18.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|284172822|ref|YP_003406204.1| - 0.0013 18.2 0.1 0.0041 16.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284172822|ref|YP_003406204.1| - 0.0029 17.2 0.0 0.025 14.2 0.0 2.5 4 0 0 4 4 3 1 Homeodomain-like domain HTH_24 PF13412.1 gi|284172822|ref|YP_003406204.1| - 0.0042 16.4 0.0 0.015 14.6 0.0 1.9 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|284172822|ref|YP_003406204.1| - 0.011 15.3 0.0 0.046 13.3 0.0 2.2 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.15 gi|284172822|ref|YP_003406204.1| - 0.014 15.4 0.0 0.035 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF742 PF05331.6 gi|284172822|ref|YP_003406204.1| - 0.034 13.7 0.0 0.067 12.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HrcA_DNA-bdg PF03444.10 gi|284172822|ref|YP_003406204.1| - 0.068 12.6 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF1880 PF08976.6 gi|284172822|ref|YP_003406204.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1880) Sigma70_r4_2 PF08281.7 gi|284172822|ref|YP_003406204.1| - 0.23 10.9 1.0 0.58 9.6 0.0 2.2 3 0 0 3 3 3 0 Sigma-70, region 4 Amidohydro_2 PF04909.9 gi|284172824|ref|YP_003406206.1| - 3.6e-31 108.7 0.9 4.8e-31 108.3 0.6 1.4 1 1 0 1 1 1 1 Amidohydrolase Rieske PF00355.21 gi|284172825|ref|YP_003406207.1| - 1.3e-16 59.9 1.7 1.1e-15 56.9 1.2 1.9 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|284172825|ref|YP_003406207.1| - 7.5e-13 48.1 0.0 8.9e-06 25.3 0.0 2.0 2 0 0 2 2 2 2 Rieske-like [2Fe-2S] domain Aldedh PF00171.17 gi|284172826|ref|YP_003406208.1| - 4.2e-166 552.8 0.0 5.1e-166 552.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|284172826|ref|YP_003406208.1| - 0.018 13.8 0.0 0.043 12.5 0.0 1.6 2 0 0 2 2 2 0 Acyl-CoA reductase (LuxC) DEP PF00610.16 gi|284172830|ref|YP_003406212.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) PAC2 PF09754.4 gi|284172831|ref|YP_003406213.1| - 6e-20 72.0 1.2 7.3e-20 71.7 0.9 1.0 1 0 0 1 1 1 1 PAC2 family NTP_transf_3 PF12804.2 gi|284172831|ref|YP_003406213.1| - 0.0025 17.9 0.3 0.0031 17.5 0.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain DNA_topoisoIV PF00521.15 gi|284172831|ref|YP_003406213.1| - 0.063 12.1 0.1 0.066 12.0 0.1 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A LXG PF04740.7 gi|284172831|ref|YP_003406213.1| - 0.069 12.9 2.8 0.12 12.2 1.9 1.4 1 0 0 1 1 1 0 LXG domain of WXG superfamily AAA_23 PF13476.1 gi|284172831|ref|YP_003406213.1| - 0.16 12.3 1.0 0.18 12.0 0.7 1.2 1 0 0 1 1 1 0 AAA domain DUF4172 PF13776.1 gi|284172831|ref|YP_003406213.1| - 0.18 11.9 2.4 1.7 8.8 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4172) eIF3_N PF09440.5 gi|284172831|ref|YP_003406213.1| - 0.29 11.3 4.2 1.1 9.4 1.8 2.1 2 0 0 2 2 2 0 eIF3 subunit 6 N terminal domain FlxA PF14282.1 gi|284172831|ref|YP_003406213.1| - 1.5 8.8 18.7 0.11 12.4 9.6 1.5 2 0 0 2 2 2 0 FlxA-like protein DDE_Tnp_IS240 PF13610.1 gi|284172832|ref|YP_003406214.1| - 0.00067 19.6 0.0 0.00067 19.6 0.0 1.0 1 0 0 1 1 1 1 DDE domain Fic_N PF13784.1 gi|284172833|ref|YP_003406215.1| - 6.5e-13 48.3 0.6 2.2e-12 46.6 0.4 1.8 1 1 0 1 1 1 1 Fic/DOC family N-terminal DUF4172 PF13776.1 gi|284172833|ref|YP_003406215.1| - 0.094 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) OrfB_IS605 PF01385.14 gi|284172834|ref|YP_003406216.1| - 3.9e-49 167.0 0.0 5.1e-49 166.7 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|284172834|ref|YP_003406216.1| - 8.2e-21 73.4 0.9 2e-20 72.2 0.4 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|284172834|ref|YP_003406216.1| - 0.02 14.3 2.3 0.043 13.2 1.6 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|284172834|ref|YP_003406216.1| - 0.067 13.0 1.1 0.19 11.5 0.8 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF4298 PF14131.1 gi|284172834|ref|YP_003406216.1| - 0.076 12.8 0.1 0.22 11.4 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) TF_Zn_Ribbon PF08271.7 gi|284172834|ref|YP_003406216.1| - 0.08 12.2 1.5 0.2 11.0 1.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding C1_3 PF07649.7 gi|284172834|ref|YP_003406216.1| - 0.56 10.2 3.6 0.51 10.4 0.8 2.2 2 0 0 2 2 2 0 C1-like domain Glyco_hydro_65C PF03633.10 gi|284172835|ref|YP_003406217.1| - 0.045 13.8 0.3 0.15 12.1 0.0 2.1 3 0 0 3 3 3 0 Glycosyl hydrolase family 65, C-terminal domain HTH_3 PF01381.17 gi|284172835|ref|YP_003406217.1| - 0.085 12.7 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix AAA_16 PF13191.1 gi|284172836|ref|YP_003406218.1| - 1.7e-13 50.9 0.6 6.1e-13 49.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|284172836|ref|YP_003406218.1| - 1.9e-12 47.4 0.0 4.2e-12 46.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|284172836|ref|YP_003406218.1| - 4.4e-09 35.9 0.4 1.6e-08 34.1 0.0 2.1 3 0 0 3 3 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|284172836|ref|YP_003406218.1| - 2.3e-07 31.0 0.1 6.8e-07 29.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|284172836|ref|YP_003406218.1| - 8.5e-07 28.9 0.0 2e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|284172836|ref|YP_003406218.1| - 4.3e-06 25.8 0.0 8.6e-06 24.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|284172836|ref|YP_003406218.1| - 0.00037 19.9 0.0 0.0025 17.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|284172836|ref|YP_003406218.1| - 0.00065 19.3 0.1 0.0026 17.4 0.0 1.9 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.22 gi|284172836|ref|YP_003406218.1| - 0.0012 19.1 0.1 0.0059 16.9 0.0 2.4 1 1 1 2 2 2 1 ABC transporter MMR_HSR1 PF01926.18 gi|284172836|ref|YP_003406218.1| - 0.0013 18.7 0.0 0.028 14.3 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase Sigma54_activat PF00158.21 gi|284172836|ref|YP_003406218.1| - 0.0013 18.2 0.0 0.0025 17.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|284172836|ref|YP_003406218.1| - 0.0065 17.2 2.7 0.31 11.8 1.8 3.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|284172836|ref|YP_003406218.1| - 0.0095 16.2 0.4 0.38 11.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|284172836|ref|YP_003406218.1| - 0.013 14.6 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|284172836|ref|YP_003406218.1| - 0.015 14.8 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|284172836|ref|YP_003406218.1| - 0.018 15.1 0.0 0.056 13.6 0.0 1.9 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.12 gi|284172836|ref|YP_003406218.1| - 0.02 14.2 0.0 0.22 10.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|284172836|ref|YP_003406218.1| - 0.022 14.2 0.0 0.052 13.0 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|284172836|ref|YP_003406218.1| - 0.027 14.3 0.1 0.23 11.3 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|284172836|ref|YP_003406218.1| - 0.03 14.0 0.0 0.081 12.6 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|284172836|ref|YP_003406218.1| - 0.045 13.1 0.0 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|284172836|ref|YP_003406218.1| - 0.046 12.9 0.0 0.083 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mu-like_Pro PF10123.4 gi|284172836|ref|YP_003406218.1| - 0.052 12.9 0.1 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Mu-like prophage I protein AAA_5 PF07728.9 gi|284172836|ref|YP_003406218.1| - 0.06 13.0 0.4 0.28 10.9 0.0 2.4 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) CbiA PF01656.18 gi|284172837|ref|YP_003406219.1| - 3e-24 85.5 0.0 3.8e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|284172837|ref|YP_003406219.1| - 1.7e-07 31.3 0.0 9e-07 28.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|284172837|ref|YP_003406219.1| - 0.0011 18.1 0.1 0.01 15.0 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|284172837|ref|YP_003406219.1| - 0.0017 17.4 0.5 0.012 14.6 0.1 2.4 2 1 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|284172837|ref|YP_003406219.1| - 0.0018 17.4 0.1 0.17 10.8 0.0 2.5 3 0 0 3 3 3 1 ATPase MipZ YhjQ PF06564.7 gi|284172837|ref|YP_003406219.1| - 0.11 11.9 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 YhjQ protein Lin-8 PF03353.10 gi|284172838|ref|YP_003406220.1| - 0.02 14.1 11.9 0.027 13.7 8.2 1.1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Macoilin PF09726.4 gi|284172838|ref|YP_003406220.1| - 2.6 6.1 5.6 2.7 6.1 3.8 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF605 PF04652.11 gi|284172838|ref|YP_003406220.1| - 2.9 7.2 18.4 3.1 7.1 12.7 1.1 1 0 0 1 1 1 0 Vta1 like Tir_receptor_C PF07489.6 gi|284172838|ref|YP_003406220.1| - 6.3 6.4 12.2 8.4 6.0 8.4 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus PadR PF03551.9 gi|284172839|ref|YP_003406221.1| - 1.1e-16 60.3 1.4 1.3e-16 60.1 0.9 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|284172839|ref|YP_003406221.1| - 0.00094 19.4 0.0 0.0012 19.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|284172839|ref|YP_003406221.1| - 0.001 18.8 0.1 0.0014 18.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|284172839|ref|YP_003406221.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|284172839|ref|YP_003406221.1| - 0.021 14.8 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|284172839|ref|YP_003406221.1| - 0.041 13.5 0.2 2.6 7.7 0.1 2.3 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|284172839|ref|YP_003406221.1| - 0.12 12.1 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AsnC_trans_reg PF01037.16 gi|284172840|ref|YP_003406222.1| - 5.1e-13 48.5 0.0 8.5e-13 47.8 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|284172840|ref|YP_003406222.1| - 8.3e-11 41.1 0.5 2.1e-10 39.8 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|284172840|ref|YP_003406222.1| - 4.5e-08 32.6 0.5 1.2e-07 31.2 0.1 1.9 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|284172840|ref|YP_003406222.1| - 3.1e-07 29.9 0.1 7.9e-07 28.6 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|284172840|ref|YP_003406222.1| - 3.1e-06 26.8 0.0 5.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284172840|ref|YP_003406222.1| - 3.4e-06 26.4 0.2 5.4e-06 25.8 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|284172840|ref|YP_003406222.1| - 1.1e-05 24.8 0.1 6.8e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|284172840|ref|YP_003406222.1| - 4.7e-05 22.7 0.1 0.0001 21.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|284172840|ref|YP_003406222.1| - 9.3e-05 22.0 0.0 0.00017 21.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|284172840|ref|YP_003406222.1| - 0.0005 19.7 0.0 0.001 18.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|284172840|ref|YP_003406222.1| - 0.00079 19.3 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|284172840|ref|YP_003406222.1| - 0.00082 18.9 0.1 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_34 PF13601.1 gi|284172840|ref|YP_003406222.1| - 0.0033 17.4 0.1 0.0077 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|284172840|ref|YP_003406222.1| - 0.0042 16.5 0.0 0.0069 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|284172840|ref|YP_003406222.1| - 0.0053 16.3 0.0 0.0088 15.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|284172840|ref|YP_003406222.1| - 0.0074 16.0 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|284172840|ref|YP_003406222.1| - 0.0075 15.8 0.1 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|284172840|ref|YP_003406222.1| - 0.0088 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|284172840|ref|YP_003406222.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4250 PF14056.1 gi|284172840|ref|YP_003406222.1| - 0.021 14.5 0.2 0.061 13.0 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) HTH_7 PF02796.10 gi|284172840|ref|YP_003406222.1| - 0.023 14.5 0.0 0.069 13.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_40 PF14493.1 gi|284172840|ref|YP_003406222.1| - 0.027 14.6 0.1 0.059 13.5 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Mga PF05043.8 gi|284172840|ref|YP_003406222.1| - 0.048 13.9 0.1 0.19 12.0 0.0 1.9 3 0 0 3 3 1 0 Mga helix-turn-helix domain Trp_repressor PF01371.14 gi|284172840|ref|YP_003406222.1| - 0.05 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein DUF2042 PF09743.4 gi|284172840|ref|YP_003406222.1| - 0.054 12.7 0.0 0.099 11.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) NUMOD1 PF07453.8 gi|284172840|ref|YP_003406222.1| - 0.055 13.3 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 NUMOD1 domain HTH_36 PF13730.1 gi|284172840|ref|YP_003406222.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|284172840|ref|YP_003406222.1| - 0.065 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|284172840|ref|YP_003406222.1| - 0.089 12.9 0.0 0.23 11.5 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator RPA_C PF08784.6 gi|284172840|ref|YP_003406222.1| - 0.09 13.2 0.1 0.39 11.1 0.0 2.0 2 0 0 2 2 2 0 Replication protein A C terminal HTH_1 PF00126.22 gi|284172840|ref|YP_003406222.1| - 0.15 11.8 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Abhydrolase_5 PF12695.2 gi|284172841|ref|YP_003406223.1| - 9.2e-12 44.9 0.1 1.6e-11 44.1 0.1 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|284172841|ref|YP_003406223.1| - 3.6e-09 36.2 0.0 1.4e-08 34.2 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|284172841|ref|YP_003406223.1| - 4.3e-09 35.9 0.2 1.2e-08 34.4 0.1 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|284172841|ref|YP_003406223.1| - 9e-08 32.2 3.8 4.6e-06 26.6 2.7 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|284172841|ref|YP_003406223.1| - 0.00022 20.8 0.7 0.15 11.6 0.2 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|284172841|ref|YP_003406223.1| - 0.00051 19.8 0.0 0.0033 17.1 0.0 1.9 1 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_7 PF12715.2 gi|284172841|ref|YP_003406223.1| - 0.0038 16.2 0.0 0.014 14.3 0.0 1.8 1 1 0 1 1 1 1 Abhydrolase family PGAP1 PF07819.8 gi|284172841|ref|YP_003406223.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Tannase PF07519.6 gi|284172841|ref|YP_003406223.1| - 0.17 10.5 0.0 0.25 9.9 0.0 1.1 1 0 0 1 1 1 0 Tannase and feruloyl esterase DUF2336 PF10098.4 gi|284172842|ref|YP_003406224.1| - 0.12 11.5 6.9 0.063 12.5 2.5 2.1 1 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2336) DUF21 PF01595.15 gi|284172843|ref|YP_003406225.1| - 4.1e-53 179.4 2.6 5.4e-53 178.9 1.8 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|284172843|ref|YP_003406225.1| - 1.4e-21 76.0 2.4 1.4e-21 76.0 1.6 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|284172843|ref|YP_003406225.1| - 5.2e-19 67.7 3.9 6e-09 35.5 0.5 2.8 2 0 0 2 2 2 2 CBS domain Trigger_C PF05698.9 gi|284172843|ref|YP_003406225.1| - 0.031 14.0 1.3 0.06 13.1 0.9 1.4 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus CbiX PF01903.12 gi|284172843|ref|YP_003406225.1| - 0.042 13.9 1.8 0.84 9.7 0.2 2.5 2 0 0 2 2 2 0 CbiX GSK-3_bind PF05350.7 gi|284172843|ref|YP_003406225.1| - 0.061 12.7 0.1 0.75 9.1 0.0 2.2 2 0 0 2 2 2 0 Glycogen synthase kinase-3 binding DUF849 PF05853.7 gi|284172844|ref|YP_003406226.1| - 0.25 10.1 0.0 0.38 9.5 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) Beta_helix PF13229.1 gi|284172846|ref|YP_003406228.1| - 1.8e-05 24.5 4.0 0.00011 22.0 1.7 2.7 2 1 0 2 2 2 1 Right handed beta helix region Pec_lyase_C PF00544.14 gi|284172846|ref|YP_003406228.1| - 2.5e-05 23.8 0.2 4.2e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Pectate lyase NosD PF05048.8 gi|284172846|ref|YP_003406228.1| - 0.00099 18.3 0.2 0.015 14.4 0.0 2.2 2 0 0 2 2 2 1 Periplasmic copper-binding protein (NosD) DUF1349 PF07081.6 gi|284172846|ref|YP_003406228.1| - 0.013 14.8 0.0 0.052 12.8 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1349) tRNA_anti_2 PF13742.1 gi|284172846|ref|YP_003406228.1| - 0.052 13.4 0.0 3.5 7.5 0.0 2.4 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain IclR PF01614.13 gi|284172847|ref|YP_003406229.1| - 4.5e-36 123.4 0.1 7.2e-36 122.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|284172847|ref|YP_003406229.1| - 5.2e-11 41.9 0.1 1.9e-10 40.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|284172847|ref|YP_003406229.1| - 3.4e-09 35.9 0.0 6.8e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|284172847|ref|YP_003406229.1| - 3.8e-08 32.8 0.0 9.5e-08 31.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|284172847|ref|YP_003406229.1| - 9.6e-06 25.1 0.1 6.1e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|284172847|ref|YP_003406229.1| - 1.3e-05 24.8 0.1 4.1e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|284172847|ref|YP_003406229.1| - 4.1e-05 23.1 0.0 9.2e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|284172847|ref|YP_003406229.1| - 6.7e-05 22.5 0.0 0.00013 21.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|284172847|ref|YP_003406229.1| - 0.00061 19.5 0.0 0.0092 15.7 0.0 2.5 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|284172847|ref|YP_003406229.1| - 0.00084 18.7 0.0 0.0019 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|284172847|ref|YP_003406229.1| - 0.0026 17.2 0.0 0.01 15.4 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain HTH_DeoR PF08220.7 gi|284172847|ref|YP_003406229.1| - 0.0027 17.1 0.1 0.006 16.1 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|284172847|ref|YP_003406229.1| - 0.0038 16.9 0.0 0.0095 15.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|284172847|ref|YP_003406229.1| - 0.006 16.1 0.0 0.017 14.6 0.0 1.8 2 0 0 2 2 1 1 LexA DNA binding domain KfrA_N PF11740.3 gi|284172847|ref|YP_003406229.1| - 0.0076 16.6 0.0 0.029 14.8 0.0 1.9 1 1 0 1 1 1 1 Plasmid replication region DNA-binding N-term HTH_38 PF13936.1 gi|284172847|ref|YP_003406229.1| - 0.012 15.1 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|284172847|ref|YP_003406229.1| - 0.014 14.8 0.0 0.035 13.6 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_41 PF14502.1 gi|284172847|ref|YP_003406229.1| - 0.014 14.9 0.0 0.051 13.1 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|284172847|ref|YP_003406229.1| - 0.015 15.2 0.0 0.043 13.8 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|284172847|ref|YP_003406229.1| - 0.042 14.1 0.1 0.15 12.4 0.0 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain GAF_2 PF13185.1 gi|284172847|ref|YP_003406229.1| - 0.064 13.7 0.0 0.11 13.0 0.0 1.5 1 1 0 1 1 1 0 GAF domain HTH_1 PF00126.22 gi|284172847|ref|YP_003406229.1| - 0.086 12.5 0.0 0.36 10.5 0.0 2.1 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.14 gi|284172847|ref|YP_003406229.1| - 0.092 12.7 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|284172847|ref|YP_003406229.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_36 PF13730.1 gi|284172847|ref|YP_003406229.1| - 0.17 12.0 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2580 PF10824.3 gi|284172847|ref|YP_003406229.1| - 0.47 10.8 2.9 0.63 10.4 0.1 2.5 3 1 1 4 4 3 0 Protein of unknown function (DUF2580) Pec_lyase_C PF00544.14 gi|284172848|ref|YP_003406230.1| - 3.2e-06 26.7 0.1 4.6e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Pectate lyase Pectate_lyase_2 PF06917.7 gi|284172849|ref|YP_003406231.1| - 3.8e-102 342.3 0.0 4.7e-101 338.7 0.0 2.0 1 1 0 1 1 1 1 Periplasmic pectate lyase GlcNAc_2-epim PF07221.6 gi|284172849|ref|YP_003406231.1| - 0.06 12.3 1.3 0.5 9.3 0.0 2.7 4 0 0 4 4 4 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_4 PF02056.11 gi|284172850|ref|YP_003406232.1| - 1.2e-49 168.0 0.0 1.9e-49 167.4 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|284172850|ref|YP_003406232.1| - 2.9e-30 105.7 0.0 4e-30 105.3 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|284172850|ref|YP_003406232.1| - 0.089 12.6 0.1 2.1 8.1 0.0 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF4179 PF13786.1 gi|284172851|ref|YP_003406233.1| - 0.07 13.3 0.2 6.7 7.0 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Secretin PF00263.16 gi|284172851|ref|YP_003406233.1| - 0.098 12.0 2.7 0.11 11.8 0.6 2.0 2 0 0 2 2 2 0 Bacterial type II and III secretion system protein DUF1349 PF07081.6 gi|284172852|ref|YP_003406234.1| - 9.9e-08 31.5 0.0 1.6e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) Pec_lyase_C PF00544.14 gi|284172852|ref|YP_003406234.1| - 8e-06 25.4 1.0 1.3e-05 24.7 0.7 1.3 1 0 0 1 1 1 1 Pectate lyase DUF1583 PF07622.6 gi|284172852|ref|YP_003406234.1| - 0.0021 16.5 0.0 0.003 16.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1583) Beta_helix PF13229.1 gi|284172852|ref|YP_003406234.1| - 0.0062 16.3 12.7 0.047 13.4 8.0 2.6 2 1 1 3 3 3 2 Right handed beta helix region TAT_signal PF10518.4 gi|284172852|ref|YP_003406234.1| - 0.01 15.7 0.2 0.026 14.4 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_28 PF00295.12 gi|284172853|ref|YP_003406235.1| - 3.1e-48 164.4 4.6 2e-46 158.4 2.2 2.8 3 1 0 3 3 3 1 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.2 gi|284172853|ref|YP_003406235.1| - 5.9e-22 78.9 3.7 5.8e-20 72.3 3.1 3.0 2 2 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|284172853|ref|YP_003406235.1| - 4.1e-11 42.8 6.8 2.7e-07 30.4 7.3 3.1 2 1 1 3 3 3 2 Right handed beta helix region NosD PF05048.8 gi|284172853|ref|YP_003406235.1| - 5.5e-05 22.4 2.7 0.00017 20.8 1.9 1.7 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD)