# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Yip1 PF04893.17 gi|284172525|ref|YP_003405907.1| - 3.2e-19 69.3 9.9 3.9e-19 69.0 9.9 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|284172525|ref|YP_003405907.1| - 1.6e-05 24.7 3.3 2.3e-05 24.2 3.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) FtsX PF02687.21 gi|284172525|ref|YP_003405907.1| - 0.053 14.0 8.8 0.17 12.4 4.1 2.6 2 1 0 2 2 2 0 FtsX-like permease family DUF4013 PF13197.6 gi|284172525|ref|YP_003405907.1| - 0.45 10.3 15.0 0.98 9.2 8.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) DUF2768 PF10966.8 gi|284172525|ref|YP_003405907.1| - 1.3 9.5 8.8 1.5 9.3 0.3 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF2768) Aldo_ket_red PF00248.21 gi|284172526|ref|YP_003405908.1| - 2e-73 247.1 0.0 2.5e-73 246.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 gi|284172527|ref|YP_003405909.1| - 5e-24 85.4 0.0 7.9e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172527|ref|YP_003405909.1| - 0.0038 17.2 0.1 0.0084 16.1 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain MCPsignal PF00015.21 gi|284172528|ref|YP_003405910.1| - 4.4e-33 114.5 63.4 8.3e-33 113.6 23.5 5.0 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|284172528|ref|YP_003405910.1| - 2.5e-14 53.4 15.7 4.6e-11 42.9 0.2 5.8 6 1 0 6 6 5 2 HAMP domain DUF948 PF06103.11 gi|284172528|ref|YP_003405910.1| - 0.0026 18.0 45.5 0.03 14.6 4.6 7.6 2 1 2 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 gi|284172528|ref|YP_003405910.1| - 0.011 16.5 3.0 0.011 16.5 3.0 5.5 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) ING PF12998.7 gi|284172528|ref|YP_003405910.1| - 0.29 11.8 12.7 3.1 8.4 0.7 4.4 2 2 2 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding DUF1890 PF09001.11 gi|284172528|ref|YP_003405910.1| - 0.71 10.3 5.3 1 9.8 0.2 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1890) Katanin_con80 PF13925.6 gi|284172528|ref|YP_003405910.1| - 0.79 9.8 10.3 0.23 11.5 0.4 3.8 4 0 0 4 4 4 0 con80 domain of Katanin DUF1664 PF07889.12 gi|284172528|ref|YP_003405910.1| - 1.3 9.1 45.4 0.026 14.6 3.1 6.2 3 2 3 7 7 6 0 Protein of unknown function (DUF1664) COG5 PF10392.9 gi|284172528|ref|YP_003405910.1| - 3.1 8.0 18.8 0.64 10.2 0.8 4.4 2 1 1 4 4 4 0 Golgi transport complex subunit 5 Laminin_II PF06009.12 gi|284172528|ref|YP_003405910.1| - 3.1 7.8 47.3 1.6 8.8 5.7 5.8 2 2 3 6 6 6 0 Laminin Domain II Tmemb_cc2 PF10267.9 gi|284172528|ref|YP_003405910.1| - 4.3 6.4 34.0 0.022 13.9 14.8 2.7 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein DUF3290 PF11694.8 gi|284172528|ref|YP_003405910.1| - 5 7.1 13.7 8.8 6.3 0.0 4.6 4 1 0 4 4 4 0 Protein of unknown function (DUF3290) ApoO PF09769.9 gi|284172528|ref|YP_003405910.1| - 8.2 6.4 15.4 4.5 7.3 0.7 4.6 3 1 1 4 4 4 0 Apolipoprotein O Lactonase PF10282.9 gi|284172529|ref|YP_003405911.1| - 2.8e-106 355.7 0.0 3.2e-106 355.5 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|284172529|ref|YP_003405911.1| - 1.1e-06 28.5 0.0 0.012 15.2 0.0 3.0 2 1 1 3 3 3 3 SMP-30/Gluconolactonase/LRE-like region DUF1513 PF07433.11 gi|284172529|ref|YP_003405911.1| - 0.0013 17.9 0.1 0.96 8.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1513) Lipase_C PF18067.1 gi|284172529|ref|YP_003405911.1| - 0.0023 18.5 1.1 31 5.2 0.1 4.0 2 2 2 4 4 4 0 Lipase C-terminal domain CshA_NR2 PF18651.1 gi|284172529|ref|YP_003405911.1| - 0.02 14.1 0.0 0.036 13.3 0.0 1.3 1 0 0 1 1 1 0 Surface adhesin CshA non-repetitive domain 2 NHL PF01436.21 gi|284172529|ref|YP_003405911.1| - 0.048 13.7 2.2 5.2 7.3 0.0 3.1 3 0 0 3 3 3 0 NHL repeat DUF3509 PF12021.8 gi|284172529|ref|YP_003405911.1| - 0.062 13.1 0.0 6 6.7 0.0 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF3509) PQQ PF01011.21 gi|284172529|ref|YP_003405911.1| - 0.12 12.3 0.3 30 4.8 0.0 3.8 4 0 0 4 4 4 0 PQQ enzyme repeat TonB_C PF03544.14 gi|284172529|ref|YP_003405911.1| - 0.13 12.8 0.0 3.9 8.0 0.0 2.8 3 0 0 3 3 3 0 Gram-negative bacterial TonB protein C-terminal GFO_IDH_MocA PF01408.22 gi|284172530|ref|YP_003405912.1| - 8.7e-23 81.4 0.0 1.5e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172530|ref|YP_003405912.1| - 6.7e-15 55.1 0.2 1.3e-14 54.2 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|284172530|ref|YP_003405912.1| - 0.00051 20.5 0.1 0.001 19.5 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ox_reductase_C PF08635.10 gi|284172530|ref|YP_003405912.1| - 0.041 13.5 0.1 0.31 10.7 0.1 2.0 1 1 1 2 2 2 0 Putative oxidoreductase C terminal domain CoA_binding_2 PF13380.6 gi|284172530|ref|YP_003405912.1| - 0.043 14.3 0.0 0.077 13.5 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.16 gi|284172530|ref|YP_003405912.1| - 0.092 13.4 0.1 0.37 11.5 0.1 1.9 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain PuR_N PF09182.10 gi|284172530|ref|YP_003405912.1| - 0.15 12.0 0.1 0.3 11.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal DUF296 PF03479.15 gi|284172531|ref|YP_003405913.1| - 3.4e-18 66.0 0.0 4.3e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain TAT_signal PF10518.9 gi|284172532|ref|YP_003405914.1| - 0.46 10.4 5.8 0.94 9.4 5.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1656 PF07869.12 gi|284172532|ref|YP_003405914.1| - 1.7 8.7 10.2 0.57 10.2 3.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1656) Aldedh PF00171.22 gi|284172533|ref|YP_003405915.1| - 9.7e-167 555.1 3.2 1.1e-166 555.0 3.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Lactamase_B_3 PF13483.6 gi|284172534|ref|YP_003405916.1| - 1.5e-11 44.4 0.0 2e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|284172534|ref|YP_003405916.1| - 2.3e-10 40.3 0.5 4.1e-10 39.5 0.5 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Epimerase PF01370.21 gi|284172535|ref|YP_003405917.1| - 3.2e-20 72.6 0.0 4e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|284172535|ref|YP_003405917.1| - 6.3e-13 48.4 0.0 8.6e-13 47.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|284172535|ref|YP_003405917.1| - 2.4e-11 43.6 0.3 1.1e-10 41.5 0.0 2.0 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|284172535|ref|YP_003405917.1| - 2.7e-11 43.2 0.0 4.8e-10 39.1 0.0 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|284172535|ref|YP_003405917.1| - 1.8e-08 34.5 0.0 2.5e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|284172535|ref|YP_003405917.1| - 1.1e-07 31.2 0.0 1.6e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|284172535|ref|YP_003405917.1| - 1.8e-07 30.6 0.0 2.6e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein DapB_N PF01113.20 gi|284172535|ref|YP_003405917.1| - 0.022 14.9 0.0 0.29 11.2 0.0 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.10 gi|284172535|ref|YP_003405917.1| - 0.034 14.1 0.0 0.74 9.7 0.0 2.3 1 1 0 1 1 1 0 KR domain Usp PF00582.26 gi|284172536|ref|YP_003405918.1| - 3.8e-12 46.9 0.1 7.8e-12 45.9 0.1 1.4 1 1 0 1 1 1 1 Universal stress protein family MR_MLE_C PF13378.6 gi|284172537|ref|YP_003405919.1| - 9.8e-66 221.5 0.1 1.4e-65 220.9 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172537|ref|YP_003405919.1| - 2e-14 53.8 0.0 1.1e-13 51.4 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DHDPS PF00701.22 gi|284172538|ref|YP_003405920.1| - 6.9e-35 120.2 0.0 8.3e-35 119.9 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family MR_MLE_C PF13378.6 gi|284172539|ref|YP_003405921.1| - 2e-46 158.4 1.1 3.1e-46 157.7 0.5 1.6 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172539|ref|YP_003405921.1| - 1.6e-12 47.6 0.0 2.8e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Pectinesterase PF01095.19 gi|284172540|ref|YP_003405922.1| - 4e-73 245.8 0.0 4.9e-73 245.5 0.0 1.1 1 0 0 1 1 1 1 Pectinesterase Beta_helix PF13229.6 gi|284172540|ref|YP_003405922.1| - 0.0053 16.6 0.0 0.0095 15.8 0.0 1.4 1 0 0 1 1 1 1 Right handed beta helix region ThuA PF06283.11 gi|284172541|ref|YP_003405923.1| - 5.3e-29 101.9 0.0 6.1e-29 101.7 0.0 1.1 1 0 0 1 1 1 1 Trehalose utilisation RicinB_lectin_2 PF14200.6 gi|284172542|ref|YP_003405924.1| - 4.9e-39 132.9 10.8 1.4e-23 83.4 3.8 2.6 2 0 0 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284172542|ref|YP_003405924.1| - 3.4e-15 56.4 2.8 3.4e-15 56.4 2.8 1.8 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain Pec_lyase_C PF00544.19 gi|284172542|ref|YP_003405924.1| - 2e-05 24.3 2.6 0.00021 20.9 2.6 2.4 1 1 0 1 1 1 1 Pectate lyase Inhibitor_I66 PF16850.5 gi|284172542|ref|YP_003405924.1| - 0.0049 16.7 0.0 0.19 11.6 0.0 2.3 2 0 0 2 2 2 1 Peptidase inhibitor I66 DUF2778 PF10908.8 gi|284172542|ref|YP_003405924.1| - 0.036 14.4 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2778) MR_MLE_C PF13378.6 gi|284172543|ref|YP_003405925.1| - 1.1e-66 224.6 3.9 1.6e-66 224.0 3.9 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172543|ref|YP_003405925.1| - 3.3e-21 75.7 0.0 8.5e-21 74.3 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF802 PF05650.11 gi|284172543|ref|YP_003405925.1| - 0.087 13.3 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF802) ThuA PF06283.11 gi|284172544|ref|YP_003405926.1| - 4.1e-34 118.7 0.0 4.6e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation Glyco_hydro_42M PF08532.10 gi|284172544|ref|YP_003405926.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 1 0 1 1 1 0 Beta-galactosidase trimerisation domain GFO_IDH_MocA PF01408.22 gi|284172545|ref|YP_003405927.1| - 2.8e-18 66.9 0.0 4.3e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|284172545|ref|YP_003405927.1| - 0.00045 20.9 0.0 0.00077 20.1 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|284172545|ref|YP_003405927.1| - 0.0088 16.6 0.0 0.017 15.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.17 gi|284172545|ref|YP_003405927.1| - 0.054 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|284172545|ref|YP_003405927.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GOLD_2 PF13897.6 gi|284172545|ref|YP_003405927.1| - 0.17 12.4 0.1 1.1 9.8 0.0 2.1 2 0 0 2 2 2 0 Golgi-dynamics membrane-trafficking Bac_luciferase PF00296.20 gi|284172546|ref|YP_003405928.1| - 2.4e-49 168.5 0.0 3e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Lipase_GDSL_2 PF13472.6 gi|284172547|ref|YP_003405929.1| - 7.5e-19 68.8 0.0 9.2e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|284172547|ref|YP_003405929.1| - 5e-10 39.7 0.0 6.8e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DltD PF04914.12 gi|284172547|ref|YP_003405929.1| - 0.074 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 DltD protein adh_short_C2 PF13561.6 gi|284172548|ref|YP_003405930.1| - 4.9e-65 219.4 3.8 5.9e-65 219.1 3.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172548|ref|YP_003405930.1| - 8e-62 208.2 4.0 9.3e-62 208.0 4.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172548|ref|YP_003405930.1| - 4.5e-15 56.0 1.0 6.1e-15 55.6 1.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172548|ref|YP_003405930.1| - 0.0002 20.9 0.2 0.00047 19.7 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|284172548|ref|YP_003405930.1| - 0.00047 20.4 0.3 0.0039 17.5 0.3 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|284172548|ref|YP_003405930.1| - 0.097 11.7 0.3 0.15 11.1 0.3 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 gi|284172548|ref|YP_003405930.1| - 0.36 10.4 2.0 0.62 9.6 2.0 1.5 1 0 0 1 1 1 0 NmrA-like family SBP_bac_5 PF00496.22 gi|284172549|ref|YP_003405931.1| - 1.6e-34 119.5 0.7 2.7e-34 118.7 0.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172549|ref|YP_003405931.1| - 0.022 14.6 1.8 0.033 14.0 1.8 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.22 gi|284172550|ref|YP_003405932.1| - 3.1e-34 118.6 0.4 5.1e-34 117.9 0.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172550|ref|YP_003405932.1| - 0.0004 20.1 0.1 0.00062 19.5 0.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_5 PF00496.22 gi|284172551|ref|YP_003405933.1| - 4.8e-41 141.0 3.8 7.2e-41 140.4 3.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172551|ref|YP_003405933.1| - 0.00031 20.4 0.3 0.00046 19.9 0.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CRPA PF05745.11 gi|284172552|ref|YP_003405934.1| - 1.2 9.2 6.0 1.4 8.9 6.0 1.0 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) BPD_transp_1 PF00528.22 gi|284172553|ref|YP_003405935.1| - 4.8e-31 107.9 12.2 4.8e-31 107.9 12.2 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2956 PF11169.8 gi|284172553|ref|YP_003405935.1| - 0.14 12.3 0.4 0.31 11.3 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) DUF3464 PF11947.8 gi|284172553|ref|YP_003405935.1| - 3.1 7.5 3.9 6.4 6.5 3.2 1.9 1 1 0 1 1 1 0 Photosynthesis affected mutant 68 BPD_transp_1 PF00528.22 gi|284172554|ref|YP_003405936.1| - 9.4e-26 90.7 8.8 9.4e-26 90.7 8.8 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|284172555|ref|YP_003405937.1| - 3.2e-50 170.2 0.0 2.7e-27 96.0 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|284172555|ref|YP_003405937.1| - 5.8e-36 122.8 4.6 8.1e-19 67.9 0.2 2.4 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172555|ref|YP_003405937.1| - 1.9e-15 57.4 7.5 5.5e-08 33.0 0.7 4.2 2 2 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284172555|ref|YP_003405937.1| - 9e-08 32.5 1.2 0.033 14.5 0.0 3.4 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.19 gi|284172555|ref|YP_003405937.1| - 4.8e-07 29.4 1.5 0.024 14.1 0.1 4.1 4 0 0 4 4 4 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284172555|ref|YP_003405937.1| - 5.9e-07 30.0 0.0 0.0095 16.3 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|284172555|ref|YP_003405937.1| - 2.5e-06 27.1 0.1 0.053 13.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|284172555|ref|YP_003405937.1| - 1.6e-05 24.7 0.1 0.31 10.8 0.0 3.4 3 0 0 3 3 3 2 IstB-like ATP binding protein NACHT PF05729.12 gi|284172555|ref|YP_003405937.1| - 0.00012 22.1 2.0 0.37 10.7 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.6 gi|284172555|ref|YP_003405937.1| - 0.00013 21.6 0.0 1.2 8.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|284172555|ref|YP_003405937.1| - 0.00016 21.6 0.0 0.2 11.5 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase NB-ARC PF00931.22 gi|284172555|ref|YP_003405937.1| - 0.00016 21.0 0.2 0.13 11.5 0.1 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.16 gi|284172555|ref|YP_003405937.1| - 0.00032 20.2 0.0 0.98 8.8 0.1 2.4 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.22 gi|284172555|ref|YP_003405937.1| - 0.00055 20.3 0.1 2 8.9 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_24 PF13479.6 gi|284172555|ref|YP_003405937.1| - 0.00077 19.2 0.0 0.57 9.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|284172555|ref|YP_003405937.1| - 0.0011 19.0 1.2 1.9 8.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|284172555|ref|YP_003405937.1| - 0.0016 17.8 0.0 0.53 9.6 0.0 2.5 2 0 0 2 2 2 1 KaiC MobB PF03205.14 gi|284172555|ref|YP_003405937.1| - 0.0017 18.2 0.1 1.8 8.5 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|284172555|ref|YP_003405937.1| - 0.0027 17.9 0.4 1.2 9.3 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|284172555|ref|YP_003405937.1| - 0.0041 17.7 0.0 1.8 9.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|284172555|ref|YP_003405937.1| - 0.0058 16.4 1.3 9.3 5.8 0.0 3.2 2 1 0 3 3 3 0 AAA ATPase domain AAA_7 PF12775.7 gi|284172555|ref|YP_003405937.1| - 0.0067 16.0 0.1 5.7 6.4 0.1 3.0 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA PF00004.29 gi|284172555|ref|YP_003405937.1| - 0.0083 16.6 0.3 2.6 8.5 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|284172555|ref|YP_003405937.1| - 0.0092 15.3 0.0 3.4 6.9 0.0 2.6 3 0 0 3 3 3 1 Zeta toxin Sigma54_activat PF00158.26 gi|284172555|ref|YP_003405937.1| - 0.012 15.3 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|284172555|ref|YP_003405937.1| - 0.017 15.2 0.0 0.049 13.7 0.0 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain Roc PF08477.13 gi|284172555|ref|YP_003405937.1| - 0.027 14.7 0.9 4.3 7.6 0.2 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Mg_chelatase PF01078.21 gi|284172555|ref|YP_003405937.1| - 0.03 13.7 0.1 3.2 7.1 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|284172555|ref|YP_003405937.1| - 0.031 13.7 0.5 9.5 5.6 0.1 3.2 3 0 0 3 3 3 0 Bacterial TniB protein AAA_30 PF13604.6 gi|284172555|ref|YP_003405937.1| - 0.038 13.7 0.1 1.5 8.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|284172555|ref|YP_003405937.1| - 0.047 13.8 0.3 7 6.8 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|284172555|ref|YP_003405937.1| - 0.058 14.0 0.0 5 7.7 0.0 2.6 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|284172555|ref|YP_003405937.1| - 0.061 13.3 0.0 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|284172555|ref|YP_003405937.1| - 0.07 12.9 0.2 0.61 9.8 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_ATPase PF09818.9 gi|284172555|ref|YP_003405937.1| - 0.088 11.6 1.0 1.9 7.2 0.0 3.1 4 1 0 4 4 4 0 Predicted ATPase of the ABC class PRK PF00485.18 gi|284172555|ref|YP_003405937.1| - 0.1 12.3 0.2 12 5.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.15 gi|284172555|ref|YP_003405937.1| - 0.45 10.4 1.9 46 3.9 0.3 3.6 4 0 0 4 4 4 0 NTPase Hpr_kinase_C PF07475.12 gi|284172555|ref|YP_003405937.1| - 0.83 9.2 2.8 3.4 7.2 0.6 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain GD_AH_C PF04295.13 gi|284172556|ref|YP_003405938.1| - 3.1e-57 194.2 0.7 2.6e-36 125.3 0.3 2.1 2 0 0 2 2 2 2 D-galactarate dehydratase / Altronate hydrolase, C terminus TPALS PF18178.1 gi|284172556|ref|YP_003405938.1| - 0.0039 16.7 0.2 0.0081 15.6 0.2 1.5 1 1 0 1 1 1 1 TIR- and PNP-associating SLOG family CoA_binding PF02629.19 gi|284172556|ref|YP_003405938.1| - 0.038 14.7 0.1 1 10.1 0.1 2.4 2 0 0 2 2 2 0 CoA binding domain SAF PF08666.12 gi|284172557|ref|YP_003405939.1| - 5.9e-15 55.7 0.1 8.9e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 SAF domain GD_AH_C PF04295.13 gi|284172558|ref|YP_003405940.1| - 7.4e-138 459.6 2.4 8.9e-138 459.3 2.4 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus DUF3729 PF12526.8 gi|284172558|ref|YP_003405940.1| - 0.34 12.5 1.2 0.86 11.2 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3729) DHDPS PF00701.22 gi|284172559|ref|YP_003405941.1| - 5.6e-33 113.9 0.0 7e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family CBM9_2 PF16011.5 gi|284172560|ref|YP_003405942.1| - 3.2e-34 118.4 0.0 4e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 Carbohydrate-binding family 9 CBM9_1 PF06452.11 gi|284172560|ref|YP_003405942.1| - 5.6e-07 29.7 0.6 4.7e-06 26.6 0.2 2.2 2 1 0 2 2 2 1 Carbohydrate family 9 binding domain-like TPP_enzyme_C PF02775.21 gi|284172561|ref|YP_003405943.1| - 3.8e-39 133.9 0.0 6.3e-39 133.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|284172561|ref|YP_003405943.1| - 2e-37 128.5 0.0 2.5e-33 115.1 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|284172561|ref|YP_003405943.1| - 5.3e-31 107.2 0.1 1e-30 106.2 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Alpha-L-AF_C PF06964.12 gi|284172562|ref|YP_003405944.1| - 2.1e-09 37.8 0.0 3.8e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain ABC_tran PF00005.27 gi|284172564|ref|YP_003405946.1| - 4.8e-31 108.1 0.0 7.1e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172564|ref|YP_003405946.1| - 1.1e-17 64.2 0.2 2.2e-17 63.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172564|ref|YP_003405946.1| - 0.0031 17.4 1.7 0.44 10.3 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172564|ref|YP_003405946.1| - 0.0056 16.2 0.7 0.14 11.6 0.7 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284172564|ref|YP_003405946.1| - 0.011 16.0 0.8 0.38 11.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284172564|ref|YP_003405946.1| - 0.017 14.8 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284172564|ref|YP_003405946.1| - 0.044 13.7 0.1 0.074 13.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|284172564|ref|YP_003405946.1| - 0.054 13.9 0.0 0.089 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|284172564|ref|YP_003405946.1| - 0.054 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 KaiC ABC_ATPase PF09818.9 gi|284172564|ref|YP_003405946.1| - 0.07 11.9 0.2 5.2 5.8 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|284172564|ref|YP_003405946.1| - 0.077 12.2 1.5 0.08 12.1 0.1 1.7 3 0 0 3 3 3 0 NB-ARC domain AAA_25 PF13481.6 gi|284172564|ref|YP_003405946.1| - 0.095 12.3 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|284172565|ref|YP_003405947.1| - 2e-22 80.2 0.0 2.8e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172565|ref|YP_003405947.1| - 5.2e-18 65.3 0.5 1.1e-17 64.3 0.5 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172565|ref|YP_003405947.1| - 2.1e-10 40.9 0.3 2e-08 34.4 0.4 2.2 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172565|ref|YP_003405947.1| - 0.0002 20.9 0.9 0.043 13.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|284172565|ref|YP_003405947.1| - 0.00042 20.6 0.7 0.0091 16.3 0.7 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|284172565|ref|YP_003405947.1| - 0.0032 17.1 0.0 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|284172565|ref|YP_003405947.1| - 0.0088 14.9 0.1 0.036 12.9 0.0 1.9 2 1 0 2 2 2 1 Predicted ATPase of the ABC class DUF87 PF01935.17 gi|284172565|ref|YP_003405947.1| - 0.018 15.1 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_15 PF13175.6 gi|284172565|ref|YP_003405947.1| - 0.019 14.7 0.0 2.4 7.8 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|284172565|ref|YP_003405947.1| - 0.037 13.7 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|284172565|ref|YP_003405947.1| - 0.064 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MeaB PF03308.16 gi|284172565|ref|YP_003405947.1| - 0.079 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|284172565|ref|YP_003405947.1| - 0.086 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|284172565|ref|YP_003405947.1| - 0.1 13.0 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|284172565|ref|YP_003405947.1| - 0.11 12.8 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|284172566|ref|YP_003405948.1| - 6.5e-23 81.4 13.2 6.5e-23 81.4 13.2 1.9 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF21 PF01595.20 gi|284172566|ref|YP_003405948.1| - 2.1 8.0 6.6 0.96 9.1 0.2 2.3 2 0 0 2 2 2 0 Cyclin M transmembrane N-terminal domain BPD_transp_1 PF00528.22 gi|284172567|ref|YP_003405949.1| - 9.6e-39 133.0 13.2 9.6e-39 133.0 13.2 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|284172568|ref|YP_003405950.1| - 4.1e-33 114.9 2.7 6.4e-33 114.2 2.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle MatE PF01554.18 gi|284172570|ref|YP_003405952.1| - 3.3e-46 156.9 27.9 5.1e-27 94.5 8.0 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|284172570|ref|YP_003405952.1| - 1.3e-10 41.5 13.1 4e-10 39.9 6.2 4.3 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|284172570|ref|YP_003405952.1| - 2.5e-08 33.0 10.6 3.1e-07 29.3 2.4 2.8 2 1 1 3 3 3 2 Lipid II flippase MurJ Usp PF00582.26 gi|284172571|ref|YP_003405953.1| - 2e-10 41.3 0.5 7.6e-10 39.4 0.5 1.7 1 1 0 1 1 1 1 Universal stress protein family TFIIA_gamma_N PF02268.16 gi|284172571|ref|YP_003405953.1| - 0.081 13.0 0.1 13 5.9 0.1 2.5 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain Alpha-L-AF_C PF06964.12 gi|284172572|ref|YP_003405954.1| - 1.8e-28 99.8 0.1 2.7e-28 99.2 0.1 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminal domain DUF5016 PF16408.5 gi|284172572|ref|YP_003405954.1| - 0.14 12.2 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5016) ABC_membrane PF00664.23 gi|284172573|ref|YP_003405955.1| - 7.4e-39 134.0 3.0 9.2e-39 133.7 3.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|284172573|ref|YP_003405955.1| - 1.7e-36 125.8 0.0 2.6e-36 125.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|284172573|ref|YP_003405955.1| - 1.3e-05 24.8 0.0 0.00021 20.8 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284172573|ref|YP_003405955.1| - 2.1e-05 25.0 0.5 7.2e-05 23.2 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284172573|ref|YP_003405955.1| - 0.00046 20.1 0.0 0.0008 19.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|284172573|ref|YP_003405955.1| - 0.0071 16.6 0.2 0.039 14.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284172573|ref|YP_003405955.1| - 0.0073 16.0 0.0 0.019 14.7 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284172573|ref|YP_003405955.1| - 0.008 15.9 0.4 0.024 14.4 0.4 1.8 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|284172573|ref|YP_003405955.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|284172573|ref|YP_003405955.1| - 0.021 15.0 0.0 0.042 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain HR_lesion PF05514.11 gi|284172573|ref|YP_003405955.1| - 0.035 14.3 0.3 0.082 13.1 0.3 1.6 1 0 0 1 1 1 0 HR-like lesion-inducing AAA_18 PF13238.6 gi|284172573|ref|YP_003405955.1| - 0.049 14.2 0.0 0.093 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Hum_adeno_E3A PF05393.11 gi|284172573|ref|YP_003405955.1| - 0.054 13.5 0.1 0.5 10.4 0.1 2.5 3 0 0 3 3 2 0 Human adenovirus early E3A glycoprotein MMR_HSR1 PF01926.23 gi|284172573|ref|YP_003405955.1| - 0.061 13.4 0.1 0.24 11.5 0.0 2.1 3 0 0 3 3 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|284172573|ref|YP_003405955.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|284172573|ref|YP_003405955.1| - 0.066 13.7 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|284172573|ref|YP_003405955.1| - 0.078 12.8 0.0 4.8 6.9 0.0 2.3 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|284172573|ref|YP_003405955.1| - 0.08 13.4 0.0 0.3 11.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|284172573|ref|YP_003405955.1| - 0.089 12.5 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|284172573|ref|YP_003405955.1| - 0.19 11.7 0.2 1.2 9.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AP_endonuc_2 PF01261.24 gi|284172574|ref|YP_003405956.1| - 3.2e-34 118.2 1.3 5e-34 117.6 1.3 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel LAL_C2 PF18603.1 gi|284172574|ref|YP_003405956.1| - 0.074 13.2 0.1 0.074 13.2 0.1 3.1 4 0 0 4 4 4 0 L-amino acid ligase C-terminal domain 2 Glyco_hydro_127 PF07944.12 gi|284172576|ref|YP_003405958.1| - 2.2e-166 554.4 0.0 2.5e-166 554.2 0.0 1.0 1 0 0 1 1 1 1 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_88 PF07470.13 gi|284172576|ref|YP_003405958.1| - 0.017 14.2 0.1 0.033 13.3 0.1 1.4 1 0 0 1 1 1 0 Glycosyl Hydrolase Family 88 IclR PF01614.18 gi|284172577|ref|YP_003405959.1| - 5.7e-36 123.2 0.0 9.3e-36 122.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172577|ref|YP_003405959.1| - 2.3e-12 46.5 0.0 1.2e-11 44.2 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172577|ref|YP_003405959.1| - 0.00036 20.3 0.0 0.00071 19.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284172577|ref|YP_003405959.1| - 0.00036 20.0 0.0 0.0007 19.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|284172577|ref|YP_003405959.1| - 0.0019 18.6 0.1 0.0042 17.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|284172577|ref|YP_003405959.1| - 0.0026 17.8 0.0 0.0066 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284172577|ref|YP_003405959.1| - 0.0028 17.6 0.0 0.0067 16.3 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|284172577|ref|YP_003405959.1| - 0.0039 17.0 0.0 0.009 15.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|284172577|ref|YP_003405959.1| - 0.0052 16.6 0.0 0.026 14.4 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|284172577|ref|YP_003405959.1| - 0.036 13.9 0.1 0.088 12.6 0.0 1.7 2 0 0 2 2 2 0 HTH DNA binding domain HTH_45 PF14947.6 gi|284172577|ref|YP_003405959.1| - 0.041 13.9 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix UPF0122 PF04297.14 gi|284172577|ref|YP_003405959.1| - 0.046 13.9 0.3 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.6 gi|284172577|ref|YP_003405959.1| - 0.074 12.9 0.0 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain SpoIIID PF12116.8 gi|284172577|ref|YP_003405959.1| - 0.15 12.2 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D SGL PF08450.12 gi|284172578|ref|YP_003405960.1| - 2.5e-69 233.6 0.3 3e-69 233.3 0.3 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Kelch_3 PF13415.6 gi|284172578|ref|YP_003405960.1| - 0.0042 17.4 0.0 4 7.8 0.0 3.3 2 0 0 2 2 2 2 Galactose oxidase, central domain Glyoxalase_6 PF18029.1 gi|284172578|ref|YP_003405960.1| - 0.043 14.6 0.1 0.19 12.5 0.1 2.1 2 0 0 2 2 2 0 Glyoxalase-like domain Str_synth PF03088.16 gi|284172578|ref|YP_003405960.1| - 0.072 13.2 0.0 1.3 9.2 0.0 2.7 3 0 0 3 3 3 0 Strictosidine synthase adh_short_C2 PF13561.6 gi|284172579|ref|YP_003405961.1| - 7.8e-66 222.0 3.7 9.5e-66 221.7 3.7 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172579|ref|YP_003405961.1| - 2.5e-50 170.7 1.0 3.2e-50 170.3 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172579|ref|YP_003405961.1| - 3.5e-17 62.9 0.4 4.7e-17 62.5 0.4 1.1 1 0 0 1 1 1 1 KR domain F420_oxidored PF03807.17 gi|284172579|ref|YP_003405961.1| - 1.3e-06 28.9 0.7 3.2e-06 27.6 0.7 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|284172579|ref|YP_003405961.1| - 0.00078 19.0 0.4 0.00097 18.7 0.4 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|284172579|ref|YP_003405961.1| - 0.0017 17.7 0.2 0.015 14.6 0.0 2.3 2 1 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.13 gi|284172579|ref|YP_003405961.1| - 0.0072 15.9 1.2 0.01 15.4 1.2 1.2 1 0 0 1 1 1 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|284172579|ref|YP_003405961.1| - 0.012 15.0 0.1 0.023 14.1 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|284172579|ref|YP_003405961.1| - 0.03 14.6 1.1 0.089 13.1 0.9 1.8 1 1 1 2 2 2 0 Saccharopine dehydrogenase NADP binding domain DUF1367 PF07105.11 gi|284172579|ref|YP_003405961.1| - 0.044 13.4 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1367) 3HCDH_N PF02737.18 gi|284172579|ref|YP_003405961.1| - 0.045 13.6 1.2 0.078 12.9 1.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284172579|ref|YP_003405961.1| - 0.058 13.6 0.4 0.76 9.9 0.4 2.2 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|284172579|ref|YP_003405961.1| - 0.12 12.0 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|284172579|ref|YP_003405961.1| - 0.19 12.2 1.0 0.39 11.2 1.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding HalOD1 PF18545.1 gi|284172580|ref|YP_003405962.1| - 4e-23 81.5 1.0 4.6e-23 81.3 1.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 ADH_N PF08240.12 gi|284172581|ref|YP_003405963.1| - 3.1e-30 104.3 0.5 7.5e-30 103.0 0.5 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284172581|ref|YP_003405963.1| - 1.1e-19 70.7 0.0 1.9e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|284172581|ref|YP_003405963.1| - 1.3e-11 44.4 0.0 2e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|284172581|ref|YP_003405963.1| - 7.7e-08 33.5 0.0 2e-07 32.1 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|284172581|ref|YP_003405963.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase MR_MLE_C PF13378.6 gi|284172582|ref|YP_003405964.1| - 6.5e-57 192.6 0.4 8.7e-57 192.2 0.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172582|ref|YP_003405964.1| - 3.1e-12 46.7 0.0 5.2e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GntP_permease PF02447.16 gi|284172583|ref|YP_003405965.1| - 9.3e-98 327.8 28.1 1.1e-97 327.6 28.1 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|284172583|ref|YP_003405965.1| - 1.2e-18 67.3 27.5 1.2e-18 67.3 27.5 2.2 2 1 0 2 2 2 1 Citrate transporter Aldedh PF00171.22 gi|284172584|ref|YP_003405966.1| - 9.9e-169 561.7 0.6 1.1e-168 561.5 0.6 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family FAA_hydrolase PF01557.18 gi|284172585|ref|YP_003405967.1| - 5.9e-23 81.7 0.1 1.2e-21 77.5 0.1 2.0 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_hydro_4C PF11975.8 gi|284172586|ref|YP_003405968.1| - 1.9e-62 211.0 0.0 2.6e-62 210.6 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 gi|284172586|ref|YP_003405968.1| - 1.5e-57 194.1 0.0 2e-57 193.7 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase DUF624 PF04854.14 gi|284172587|ref|YP_003405969.1| - 4.3e-05 23.5 0.6 4.3e-05 23.5 0.6 2.8 2 2 0 2 2 2 1 Protein of unknown function, DUF624 DUF975 PF06161.11 gi|284172587|ref|YP_003405969.1| - 0.0089 15.8 1.6 0.028 14.2 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF975) Deltameth_res PF16020.5 gi|284172587|ref|YP_003405969.1| - 2.6 8.0 4.4 1 9.3 0.4 2.4 2 0 0 2 2 2 0 Deltamethrin resistance PRA1 PF03208.19 gi|284172587|ref|YP_003405969.1| - 3.9 7.1 20.7 44 3.7 4.3 2.1 1 1 1 2 2 2 0 PRA1 family protein EMP70 PF02990.16 gi|284172587|ref|YP_003405969.1| - 8.8 4.9 12.1 0.28 9.8 4.6 1.9 1 1 1 2 2 2 0 Endomembrane protein 70 BNR_2 PF13088.6 gi|284172588|ref|YP_003405970.1| - 2.9e-08 33.4 0.3 0.00028 20.3 0.0 3.1 1 1 2 3 3 3 3 BNR repeat-like domain BNR PF02012.20 gi|284172588|ref|YP_003405970.1| - 0.00034 20.2 19.2 0.046 13.7 0.8 4.6 5 0 0 5 5 5 3 BNR/Asp-box repeat BNR_3 PF13859.6 gi|284172588|ref|YP_003405970.1| - 0.021 14.1 0.0 1.2 8.3 0.0 2.7 3 0 0 3 3 3 0 BNR repeat-like domain Sortilin-Vps10 PF15902.5 gi|284172588|ref|YP_003405970.1| - 0.05 12.4 0.7 8.7 5.0 0.0 2.7 3 0 0 3 3 3 0 Sortilin, neurotensin receptor 3, ABC_tran PF00005.27 gi|284172589|ref|YP_003405971.1| - 3.4e-32 111.8 0.0 7.2e-32 110.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172589|ref|YP_003405971.1| - 1.1e-10 42.2 0.0 4.4e-10 40.2 0.0 2.2 2 0 0 2 2 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|284172589|ref|YP_003405971.1| - 8e-10 38.7 0.0 4.1e-09 36.5 0.0 2.3 3 0 0 3 3 2 1 TOBE domain AAA_21 PF13304.6 gi|284172589|ref|YP_003405971.1| - 1.8e-08 34.6 0.0 0.0016 18.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172589|ref|YP_003405971.1| - 4.4e-05 23.0 0.1 9.8e-05 21.9 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Cytidylate_kin PF02224.18 gi|284172589|ref|YP_003405971.1| - 6.6e-05 22.7 0.5 0.00033 20.4 0.5 1.9 1 1 0 1 1 1 1 Cytidylate kinase AAA_22 PF13401.6 gi|284172589|ref|YP_003405971.1| - 8.7e-05 22.8 0.1 0.00041 20.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284172589|ref|YP_003405971.1| - 0.00021 21.0 0.0 0.0005 19.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|284172589|ref|YP_003405971.1| - 0.00081 19.3 0.1 0.0018 18.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|284172589|ref|YP_003405971.1| - 0.0021 18.5 0.1 0.0048 17.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|284172589|ref|YP_003405971.1| - 0.0067 17.0 0.2 0.1 13.2 0.0 2.6 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_23 PF13476.6 gi|284172589|ref|YP_003405971.1| - 0.017 15.6 0.0 0.046 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|284172589|ref|YP_003405971.1| - 0.029 14.5 0.0 0.087 13.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|284172589|ref|YP_003405971.1| - 0.049 13.3 0.0 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|284172589|ref|YP_003405971.1| - 0.14 12.7 1.4 0.35 11.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|284172589|ref|YP_003405971.1| - 0.16 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|284172589|ref|YP_003405971.1| - 0.17 11.5 0.5 1.6 8.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284172589|ref|YP_003405971.1| - 0.2 11.4 0.1 1.4 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain SBP_bac_1 PF01547.25 gi|284172590|ref|YP_003405972.1| - 4.4e-26 92.6 10.3 4.4e-26 92.6 10.3 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|284172590|ref|YP_003405972.1| - 2.6e-23 83.2 10.7 2.6e-23 83.2 10.7 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284172590|ref|YP_003405972.1| - 0.0019 17.9 2.6 0.0036 17.1 2.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|284172591|ref|YP_003405973.1| - 5.2e-17 62.2 18.5 5.2e-17 62.2 18.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284172592|ref|YP_003405974.1| - 6.1e-19 68.5 15.5 6.1e-19 68.5 15.5 1.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Peptidase_M24 PF00557.24 gi|284172593|ref|YP_003405975.1| - 4.7e-09 36.2 0.1 8.5e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Glyco_hydro_2_N PF02837.18 gi|284172594|ref|YP_003405976.1| - 4.3e-22 78.8 0.4 1.8e-21 76.8 0.4 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|284172594|ref|YP_003405976.1| - 1.2e-16 61.3 0.0 7.4e-16 58.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.17 gi|284172594|ref|YP_003405976.1| - 6.1e-16 58.4 0.0 6.1e-15 55.1 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain BetaGal_dom4_5 PF13364.6 gi|284172594|ref|YP_003405976.1| - 0.00037 21.0 0.0 0.00095 19.7 0.0 1.7 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Mannosidase_ig PF17786.1 gi|284172594|ref|YP_003405976.1| - 0.049 14.2 0.4 11 6.7 0.0 2.6 2 0 0 2 2 2 0 Mannosidase Ig/CBM-like domain BNR_2 PF13088.6 gi|284172595|ref|YP_003405977.1| - 4.6e-09 36.0 0.0 0.00049 19.5 0.0 2.1 1 1 0 2 2 2 2 BNR repeat-like domain BNR PF02012.20 gi|284172595|ref|YP_003405977.1| - 0.00021 20.8 10.0 0.21 11.7 0.3 4.3 3 0 0 3 3 3 2 BNR/Asp-box repeat Sortilin-Vps10 PF15902.5 gi|284172595|ref|YP_003405977.1| - 0.00032 19.6 2.3 0.034 12.9 0.1 2.7 3 0 0 3 3 3 2 Sortilin, neurotensin receptor 3, CyRPA PF18638.1 gi|284172595|ref|YP_003405977.1| - 0.18 10.9 0.1 6.2 5.9 0.0 2.7 3 0 0 3 3 3 0 Cysteine-Rich Protective Antigen 6 bladed domain adh_short_C2 PF13561.6 gi|284172596|ref|YP_003405978.1| - 2.5e-63 213.8 1.2 6.6e-62 209.1 1.2 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172596|ref|YP_003405978.1| - 5e-53 179.5 0.3 6.4e-53 179.1 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172596|ref|YP_003405978.1| - 2.9e-15 56.6 0.1 3.8e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172596|ref|YP_003405978.1| - 3.2e-05 23.5 0.1 6.3e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|284172596|ref|YP_003405978.1| - 0.0025 17.2 0.0 0.004 16.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|284172596|ref|YP_003405978.1| - 0.004 16.3 0.3 0.0056 15.8 0.3 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_7 PF13241.6 gi|284172596|ref|YP_003405978.1| - 0.015 15.7 0.0 0.036 14.5 0.0 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Polysacc_synt_2 PF02719.15 gi|284172596|ref|YP_003405978.1| - 0.054 12.6 0.0 0.06 12.5 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Glyco_hydro_43 PF04616.14 gi|284172598|ref|YP_003405980.1| - 2e-56 191.5 8.1 2.7e-56 191.0 8.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.6 gi|284172598|ref|YP_003405980.1| - 1.7e-55 185.7 27.5 1.3e-25 90.0 4.1 3.3 2 1 2 4 4 4 3 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284172598|ref|YP_003405980.1| - 1.6e-13 51.0 4.6 7.2e-13 48.9 4.7 2.0 1 1 0 1 1 1 1 Ricin-type beta-trefoil lectin domain TAT_signal PF10518.9 gi|284172598|ref|YP_003405980.1| - 0.066 13.1 1.4 0.12 12.3 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2778 PF10908.8 gi|284172598|ref|YP_003405980.1| - 0.084 13.2 0.8 1.2 9.5 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2778) GFO_IDH_MocA PF01408.22 gi|284172599|ref|YP_003405981.1| - 6.6e-22 78.6 0.0 1.2e-21 77.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172599|ref|YP_003405981.1| - 0.081 12.9 0.0 0.26 11.3 0.0 1.9 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain ABC_tran PF00005.27 gi|284172600|ref|YP_003405982.1| - 6.3e-32 111.0 0.0 1.1e-31 110.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172600|ref|YP_003405982.1| - 3.3e-12 47.0 0.0 4.1e-11 43.5 0.0 2.8 3 0 0 3 3 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|284172600|ref|YP_003405982.1| - 1.1e-09 38.3 1.3 3.3e-09 36.8 0.2 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|284172600|ref|YP_003405982.1| - 1.7e-07 31.4 0.1 0.013 15.4 0.0 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|284172600|ref|YP_003405982.1| - 3.2e-06 27.6 0.5 2.2e-05 24.9 0.0 2.7 3 0 0 3 3 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|284172600|ref|YP_003405982.1| - 0.00018 21.0 0.4 0.006 16.0 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|284172600|ref|YP_003405982.1| - 0.00056 19.9 0.0 0.00085 19.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|284172600|ref|YP_003405982.1| - 0.00097 19.4 0.3 0.0023 18.2 0.3 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284172600|ref|YP_003405982.1| - 0.0016 18.4 0.0 0.0036 17.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase TOBE PF03459.17 gi|284172600|ref|YP_003405982.1| - 0.0016 18.7 0.1 0.013 15.8 0.1 2.3 2 0 0 2 2 2 1 TOBE domain AAA PF00004.29 gi|284172600|ref|YP_003405982.1| - 0.0047 17.3 0.1 0.018 15.4 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|284172600|ref|YP_003405982.1| - 0.0082 16.5 0.1 0.014 15.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|284172600|ref|YP_003405982.1| - 0.027 14.1 0.0 0.52 9.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284172600|ref|YP_003405982.1| - 0.029 14.1 0.0 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|284172600|ref|YP_003405982.1| - 0.05 13.3 0.2 0.091 12.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain BH4 PF02180.17 gi|284172600|ref|YP_003405982.1| - 0.067 13.0 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Bcl-2 homology region 4 Mg_chelatase PF01078.21 gi|284172600|ref|YP_003405982.1| - 0.095 12.1 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|284172600|ref|YP_003405982.1| - 0.11 13.0 0.0 0.4 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|284172600|ref|YP_003405982.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|284172600|ref|YP_003405982.1| - 0.17 11.9 0.6 0.44 10.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|284172601|ref|YP_003405983.1| - 2.7e-35 121.9 0.0 4.8e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172601|ref|YP_003405983.1| - 2.7e-08 34.5 0.0 1.3e-07 32.3 0.0 2.3 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|284172601|ref|YP_003405983.1| - 7.8e-07 29.2 0.0 0.03 14.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|284172601|ref|YP_003405983.1| - 4.8e-06 26.7 1.9 1.2e-05 25.4 1.0 2.2 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|284172601|ref|YP_003405983.1| - 0.00013 21.4 0.0 0.054 12.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|284172601|ref|YP_003405983.1| - 0.00016 21.6 0.0 0.00027 20.9 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|284172601|ref|YP_003405983.1| - 0.00061 20.1 0.2 0.0014 18.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|284172601|ref|YP_003405983.1| - 0.0013 18.6 0.0 0.0036 17.2 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|284172601|ref|YP_003405983.1| - 0.0015 18.9 0.1 0.0033 17.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|284172601|ref|YP_003405983.1| - 0.0019 18.0 0.0 0.061 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|284172601|ref|YP_003405983.1| - 0.0061 16.8 0.0 0.016 15.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|284172601|ref|YP_003405983.1| - 0.0084 15.8 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MIT_C PF16565.5 gi|284172601|ref|YP_003405983.1| - 0.03 14.3 0.0 0.074 13.0 0.0 1.6 2 0 0 2 2 2 0 Phospholipase D-like domain at C-terminus of MIT AAA_25 PF13481.6 gi|284172601|ref|YP_003405983.1| - 0.036 13.6 0.1 1.4 8.5 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|284172601|ref|YP_003405983.1| - 0.048 14.1 0.0 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|284172601|ref|YP_003405983.1| - 0.067 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|284172601|ref|YP_003405983.1| - 0.069 13.6 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|284172601|ref|YP_003405983.1| - 0.085 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|284172601|ref|YP_003405983.1| - 0.1 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|284172601|ref|YP_003405983.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit RNA_helicase PF00910.22 gi|284172601|ref|YP_003405983.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|284172601|ref|YP_003405983.1| - 0.13 12.4 0.3 0.31 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|284172602|ref|YP_003405984.1| - 2.9e-09 36.9 25.2 2.9e-09 36.9 25.2 2.5 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284172603|ref|YP_003405985.1| - 1.6e-20 73.6 13.3 1.6e-20 73.6 13.3 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|284172604|ref|YP_003405986.1| - 1.2e-21 77.8 2.0 1.5e-21 77.5 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|284172604|ref|YP_003405986.1| - 5.9e-12 46.2 2.3 7.6e-12 45.8 2.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Peripla_BP_7 PF18610.1 gi|284172604|ref|YP_003405986.1| - 0.057 13.6 0.0 1 9.6 0.0 2.6 2 0 0 2 2 2 0 Periplasmic binding protein domain FAA_hydrolase PF01557.18 gi|284172605|ref|YP_003405987.1| - 7.9e-22 78.0 0.0 1.1e-20 74.3 0.0 2.0 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_hydro_43 PF04616.14 gi|284172606|ref|YP_003405988.1| - 4.8e-48 163.9 8.1 6.2e-48 163.6 8.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 RicinB_lectin_2 PF14200.6 gi|284172606|ref|YP_003405988.1| - 2.1e-33 114.9 3.9 3.2e-20 72.6 0.2 2.6 2 0 0 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|284172606|ref|YP_003405988.1| - 4.4e-12 46.3 0.2 7.3e-12 45.7 0.2 1.4 1 0 0 1 1 1 1 Ricin-type beta-trefoil lectin domain Glyco_hydro_32N PF00251.20 gi|284172606|ref|YP_003405988.1| - 0.19 11.3 0.1 0.19 11.3 0.1 2.4 2 1 1 3 3 3 0 Glycosyl hydrolases family 32 N-terminal domain DEP PF00610.21 gi|284172609|ref|YP_003405991.1| - 0.21 11.7 0.0 0.49 10.5 0.0 1.5 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) DDE_3 PF13358.6 gi|284172610|ref|YP_003405992.1| - 6.6e-37 126.5 0.0 7.4e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.26 gi|284172610|ref|YP_003405992.1| - 0.0086 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.6 gi|284172611|ref|YP_003405993.1| - 9e-22 76.5 1.9 3e-20 71.6 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn helix HTH_32 PF13565.6 gi|284172611|ref|YP_003405993.1| - 6.9e-13 49.0 1.6 5.6e-12 46.1 0.1 2.4 3 0 0 3 3 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|284172611|ref|YP_003405993.1| - 6e-11 42.3 0.5 6e-11 42.3 0.5 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|284172611|ref|YP_003405993.1| - 1.3e-10 41.1 0.3 5.1e-10 39.2 0.2 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|284172611|ref|YP_003405993.1| - 1.5e-07 31.0 0.2 3.2e-07 30.0 0.2 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_ECF PF07638.11 gi|284172611|ref|YP_003405993.1| - 0.00068 19.6 0.0 0.001 19.0 0.0 1.4 1 1 0 1 1 1 1 ECF sigma factor HTH_Tnp_IS630 PF01710.16 gi|284172611|ref|YP_003405993.1| - 0.00079 19.5 0.1 0.0014 18.7 0.1 1.4 1 0 0 1 1 1 1 Transposase HTH_11 PF08279.12 gi|284172611|ref|YP_003405993.1| - 0.0067 16.4 0.2 0.036 14.0 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_36 PF13730.6 gi|284172611|ref|YP_003405993.1| - 0.0087 16.0 0.1 0.023 14.7 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|284172611|ref|YP_003405993.1| - 0.015 15.4 0.1 0.023 14.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Terminase_5 PF06056.12 gi|284172611|ref|YP_003405993.1| - 0.017 15.0 0.2 0.032 14.1 0.2 1.5 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TctC PF03401.14 gi|284172611|ref|YP_003405993.1| - 0.027 13.5 0.0 0.029 13.4 0.0 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter family receptor HTH_Tnp_4 PF13613.6 gi|284172611|ref|YP_003405993.1| - 0.036 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_Tnp_Tc3_2 PF01498.18 gi|284172611|ref|YP_003405993.1| - 0.042 14.1 0.1 0.86 9.9 0.0 2.7 3 1 1 4 4 4 0 Transposase HTH_psq PF05225.16 gi|284172611|ref|YP_003405993.1| - 0.075 12.8 0.0 0.24 11.1 0.0 1.9 2 1 0 2 2 1 0 helix-turn-helix, Psq domain TrmB PF01978.19 gi|284172611|ref|YP_003405993.1| - 0.075 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284172611|ref|YP_003405993.1| - 0.089 12.7 0.0 0.21 11.6 0.0 1.5 2 0 0 2 2 1 0 MarR family HTH_7 PF02796.15 gi|284172611|ref|YP_003405993.1| - 0.12 12.5 0.2 23 5.2 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Luteo_P1-P2 PF08467.10 gi|284172611|ref|YP_003405993.1| - 0.12 11.6 0.3 0.16 11.2 0.3 1.2 1 0 0 1 1 1 0 Luteovirus RNA polymerase P1-P2/replicase HTH_Tnp_1 PF01527.20 gi|284172611|ref|YP_003405993.1| - 0.14 12.5 2.0 0.2 12.0 0.4 2.1 2 1 0 2 2 2 0 Transposase HTH_17 PF12728.7 gi|284172611|ref|YP_003405993.1| - 0.15 12.2 0.6 0.62 10.3 0.6 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|284172611|ref|YP_003405993.1| - 0.16 12.2 1.0 0.22 11.8 0.1 1.8 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_38 PF13936.6 gi|284172611|ref|YP_003405993.1| - 0.23 11.3 1.9 0.24 11.2 0.0 2.0 3 0 0 3 3 3 0 Helix-turn-helix domain Glyoxalase PF00903.25 gi|284172613|ref|YP_003405995.1| - 1.5e-13 51.0 0.0 1.8e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|284172613|ref|YP_003405995.1| - 2.7e-05 24.1 0.0 4.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|284172613|ref|YP_003405995.1| - 0.00014 22.6 0.2 0.00028 21.7 0.2 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain DUF1471 PF07338.13 gi|284172613|ref|YP_003405995.1| - 0.14 12.2 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1471) Response_reg PF00072.24 gi|284172615|ref|YP_003405997.1| - 4.4e-22 78.4 0.0 5.1e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain Acyltransferase PF01553.21 gi|284172616|ref|YP_003405998.1| - 0.066 12.8 0.0 0.066 12.8 0.0 1.0 1 0 0 1 1 1 0 Acyltransferase Anti-TRAP PF15777.5 gi|284172618|ref|YP_003406000.1| - 0.13 12.3 0.9 0.9 9.6 0.2 2.2 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn_Tnp_IS1 PF03811.13 gi|284172618|ref|YP_003406000.1| - 2.1 8.1 6.3 48 3.8 0.5 3.2 3 0 0 3 3 3 0 InsA N-terminal domain DnaJ PF00226.31 gi|284172621|ref|YP_003406003.1| - 1.1e-05 25.4 0.2 1.4e-05 25.1 0.2 1.1 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|284172621|ref|YP_003406003.1| - 0.041 13.8 0.1 0.059 13.3 0.1 1.3 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF2250 PF10007.9 gi|284172622|ref|YP_003406004.1| - 0.00067 19.7 0.0 0.0071 16.4 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Mrr_N PF14338.6 gi|284172622|ref|YP_003406004.1| - 0.016 15.3 0.0 0.022 14.8 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain MarR_2 PF12802.7 gi|284172622|ref|YP_003406004.1| - 0.085 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 MarR family Fic PF02661.18 gi|284172624|ref|YP_003406006.1| - 2.2e-07 31.7 0.0 3.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Fic/DOC family TrmB PF01978.19 gi|284172625|ref|YP_003406007.1| - 1e-08 34.9 1.7 1.8e-07 31.0 0.9 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284172625|ref|YP_003406007.1| - 0.0029 17.6 0.2 0.009 16.1 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|284172625|ref|YP_003406007.1| - 0.0063 17.0 0.5 0.27 11.8 0.1 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain Response_reg PF00072.24 gi|284172626|ref|YP_003406008.1| - 4.9e-16 58.9 0.1 5.8e-16 58.7 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HrcA_DNA-bdg PF03444.15 gi|284172627|ref|YP_003406009.1| - 7e-37 124.9 0.2 1.1e-36 124.3 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|284172627|ref|YP_003406009.1| - 4.2e-09 36.6 0.0 7.1e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|284172627|ref|YP_003406009.1| - 9e-07 28.8 0.0 1.5e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|284172627|ref|YP_003406009.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Put_DNA-bind_N PF06971.13 gi|284172627|ref|YP_003406009.1| - 0.032 14.2 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Rio2_N PF09202.11 gi|284172627|ref|YP_003406009.1| - 0.08 13.2 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_20 PF12840.7 gi|284172627|ref|YP_003406009.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|284172627|ref|YP_003406009.1| - 0.13 11.8 0.2 0.36 10.4 0.2 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_24 PF13412.6 gi|284172629|ref|YP_003406011.1| - 0.00081 18.9 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284172629|ref|YP_003406011.1| - 0.0068 16.3 0.0 0.0084 16.0 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284172629|ref|YP_003406011.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|284172629|ref|YP_003406011.1| - 0.036 13.9 0.0 0.045 13.6 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit H-kinase_dim PF02895.14 gi|284172631|ref|YP_003406013.1| - 0.2 12.1 0.4 0.93 9.9 0.0 2.1 2 0 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain UbiA PF01040.18 gi|284172633|ref|YP_003406015.1| - 4.2e-26 91.8 22.7 4.2e-26 91.8 22.7 1.9 1 1 1 2 2 2 1 UbiA prenyltransferase family DPM3 PF08285.11 gi|284172633|ref|YP_003406015.1| - 0.062 13.5 0.4 0.062 13.5 0.4 3.1 4 0 0 4 4 4 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) COX7B PF05392.11 gi|284172633|ref|YP_003406015.1| - 0.11 12.1 0.2 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Cytochrome C oxidase chain VIIB HTH_20 PF12840.7 gi|284172634|ref|YP_003406016.1| - 0.069 13.2 0.7 0.39 10.8 0.7 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172634|ref|YP_003406016.1| - 0.092 12.6 0.6 5.2 7.0 0.2 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF2207 PF09972.9 gi|284172636|ref|YP_003406018.1| - 0.0081 15.0 0.0 0.0081 15.0 0.0 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2207) MNHE PF01899.16 gi|284172636|ref|YP_003406018.1| - 3.5 7.4 9.5 0.23 11.2 0.2 2.3 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit DUF4399 PF14347.6 gi|284172638|ref|YP_003406020.1| - 1.7e-24 86.0 0.0 2.4e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4399) TAT_signal PF10518.9 gi|284172638|ref|YP_003406020.1| - 0.024 14.5 0.4 0.039 13.8 0.4 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2238 PF09997.9 gi|284172639|ref|YP_003406021.1| - 0.0007 19.4 6.9 0.037 13.8 6.9 2.2 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Glt_symporter PF03616.14 gi|284172639|ref|YP_003406021.1| - 0.0012 17.6 2.6 0.0015 17.3 2.6 1.1 1 0 0 1 1 1 1 Sodium/glutamate symporter MitoNEET_N PF10660.9 gi|284172639|ref|YP_003406021.1| - 0.014 15.4 0.0 0.044 13.8 0.0 1.9 1 0 0 1 1 1 0 Iron-containing outer mitochondrial membrane protein N-terminus Abhydrolase_9_N PF15420.6 gi|284172639|ref|YP_003406021.1| - 1.1 9.2 9.9 6.4 6.7 9.3 2.1 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus RRXRR PF14239.6 gi|284172640|ref|YP_003406022.1| - 0.64 9.8 3.6 2.4 8.0 2.1 2.1 2 0 0 2 2 2 0 RRXRR protein RHH_1 PF01402.21 gi|284172641|ref|YP_003406023.1| - 0.0055 16.6 1.4 0.011 15.7 1.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.15 gi|284172641|ref|YP_003406023.1| - 0.012 15.4 0.1 0.099 12.5 0.0 2.0 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Lar_restr_allev PF14354.6 gi|284172642|ref|YP_003406024.1| - 0.057 13.8 0.1 0.072 13.5 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|284172643|ref|YP_003406025.1| - 0.0088 16.2 0.7 1.1 9.5 0.0 2.1 2 0 0 2 2 2 2 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|284172643|ref|YP_003406025.1| - 0.17 12.0 3.2 0.31 11.2 2.8 1.6 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|284172643|ref|YP_003406025.1| - 0.27 11.2 3.8 1.3 9.1 3.8 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.6 gi|284172643|ref|YP_003406025.1| - 0.55 9.6 5.8 0.87 9.0 0.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger Acetyltransf_3 PF13302.7 gi|284172644|ref|YP_003406026.1| - 7.5e-16 59.1 0.1 9.9e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain 3HCDH_RFF PF18321.1 gi|284172644|ref|YP_003406026.1| - 0.11 12.9 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DUF1440 PF07274.12 gi|284172645|ref|YP_003406027.1| - 0.031 14.6 2.6 0.038 14.3 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) YqhR PF11085.8 gi|284172645|ref|YP_003406027.1| - 0.078 12.9 0.8 0.15 12.0 0.7 1.5 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF2456 PF10445.9 gi|284172645|ref|YP_003406027.1| - 1.1 9.4 4.9 7 6.8 0.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2456) DoxX PF07681.12 gi|284172646|ref|YP_003406028.1| - 3.3e-11 43.6 6.5 3.3e-11 43.6 6.5 1.5 2 0 0 2 2 2 1 DoxX HxlR PF01638.17 gi|284172647|ref|YP_003406029.1| - 6.3e-26 90.1 0.0 7.7e-26 89.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|284172647|ref|YP_003406029.1| - 0.00059 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|284172647|ref|YP_003406029.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|284172648|ref|YP_003406030.1| - 4.1e-05 23.0 0.1 0.00011 21.7 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284172648|ref|YP_003406030.1| - 6.7e-05 22.8 0.1 0.00015 21.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|284172648|ref|YP_003406030.1| - 0.00043 19.9 2.2 0.0005 19.7 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|284172648|ref|YP_003406030.1| - 0.0021 17.9 0.9 0.0076 16.1 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|284172648|ref|YP_003406030.1| - 0.0026 17.5 1.4 0.0074 16.1 0.1 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.22 gi|284172648|ref|YP_003406030.1| - 0.0047 17.0 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix MerR PF00376.23 gi|284172648|ref|YP_003406030.1| - 0.0054 16.5 0.1 0.018 14.8 0.1 1.9 1 1 0 1 1 1 1 MerR family regulatory protein DUF3516 PF12029.8 gi|284172648|ref|YP_003406030.1| - 0.0072 15.5 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3516) HTH_36 PF13730.6 gi|284172648|ref|YP_003406030.1| - 0.015 15.3 0.0 0.49 10.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172648|ref|YP_003406030.1| - 0.016 15.0 2.5 0.028 14.2 1.1 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284172648|ref|YP_003406030.1| - 0.05 13.6 0.6 0.31 11.0 0.7 2.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|284172648|ref|YP_003406030.1| - 0.093 12.5 0.2 0.17 11.6 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_31 PF13560.6 gi|284172648|ref|YP_003406030.1| - 0.094 13.1 0.2 0.094 13.1 0.2 2.8 3 1 1 4 4 4 0 Helix-turn-helix domain YojJ PF10372.9 gi|284172649|ref|YP_003406031.1| - 0.12 12.4 0.0 22 5.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus Syntaxin_2 PF14523.6 gi|284172649|ref|YP_003406031.1| - 0.13 12.6 0.1 0.42 11.0 0.1 1.8 1 1 0 1 1 1 0 Syntaxin-like protein SLATT_5 PF18160.1 gi|284172649|ref|YP_003406031.1| - 2.7 7.3 4.0 5.8 6.2 3.0 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF4177 PF13783.6 gi|284172650|ref|YP_003406032.1| - 1.1e-06 28.9 0.1 1.6e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) ArsP_1 PF03773.13 gi|284172651|ref|YP_003406033.1| - 5.2e-92 308.1 7.6 6.4e-92 307.8 7.6 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|284172651|ref|YP_003406033.1| - 4.4e-16 58.7 2.2 4.4e-16 58.7 2.2 1.8 2 0 0 2 2 2 1 YHS domain zf-FCS PF06467.14 gi|284172651|ref|YP_003406033.1| - 0.00016 21.5 0.8 0.00033 20.5 0.8 1.5 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|284172651|ref|YP_003406033.1| - 0.072 13.4 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain Saf_2TM PF18303.1 gi|284172651|ref|YP_003406033.1| - 2.5 7.7 5.2 0.69 9.5 0.8 2.3 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain DUF2890 PF11081.8 gi|284172654|ref|YP_003406036.1| - 0.27 11.4 2.3 0.4 10.8 2.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2890) Cyt_bd_oxida_I PF01654.17 gi|284172655|ref|YP_003406037.1| - 1.3e-144 482.0 23.5 1.5e-144 481.8 23.5 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I DUF3624 PF12292.8 gi|284172655|ref|YP_003406037.1| - 0.084 13.3 1.2 0.23 11.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) Cyt_bd_oxida_II PF02322.15 gi|284172656|ref|YP_003406038.1| - 1.3e-75 254.6 29.0 1.5e-75 254.4 29.0 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF1673 PF07895.11 gi|284172656|ref|YP_003406038.1| - 0.0052 16.5 2.5 0.0052 16.5 2.5 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1673) HTH_20 PF12840.7 gi|284172657|ref|YP_003406039.1| - 0.043 13.9 0.1 0.13 12.3 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L30 PF00327.20 gi|284172657|ref|YP_003406039.1| - 0.15 11.9 0.0 0.57 10.1 0.0 2.0 1 1 0 1 1 1 0 Ribosomal protein L30p/L7e Elf1 PF05129.13 gi|284172659|ref|YP_003406041.1| - 0.012 15.6 0.3 0.015 15.4 0.3 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_SprT PF17283.2 gi|284172659|ref|YP_003406041.1| - 0.054 13.4 3.6 0.11 12.4 3.6 1.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain HalOD1 PF18545.1 gi|284172660|ref|YP_003406042.1| - 6.6e-17 61.5 0.6 9.6e-17 61.0 0.6 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 Big_2 PF02368.18 gi|284172660|ref|YP_003406042.1| - 0.1 12.5 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) Glyco_trans_4_4 PF13579.6 gi|284172661|ref|YP_003406043.1| - 1.6e-14 54.6 7.2 6.9e-14 52.6 6.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|284172661|ref|YP_003406043.1| - 1.2e-13 51.4 0.3 3.3e-13 50.0 0.3 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|284172661|ref|YP_003406043.1| - 4.3e-11 42.6 0.0 1.1e-10 41.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|284172661|ref|YP_003406043.1| - 1.7e-08 35.0 0.1 1.2e-07 32.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|284172661|ref|YP_003406043.1| - 0.074 13.1 0.0 0.18 11.8 0.0 1.6 1 1 1 2 2 2 0 Glycosyl transferase 4-like DUF354 PF04007.12 gi|284172662|ref|YP_003406044.1| - 3.5e-10 39.5 0.0 5.5e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|284172662|ref|YP_003406044.1| - 0.0053 16.8 0.0 0.0084 16.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|284172662|ref|YP_003406044.1| - 0.015 15.3 0.5 0.032 14.2 0.5 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 CARDB PF07705.11 gi|284172663|ref|YP_003406045.1| - 0.0095 16.2 3.5 0.081 13.2 0.6 2.8 2 1 0 2 2 2 2 CARDB DDE_5 PF13546.6 gi|284172665|ref|YP_003406047.1| - 4e-06 26.4 0.0 4.1e-06 26.3 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Sigma70_r4 PF04545.16 gi|284172665|ref|YP_003406047.1| - 0.0042 16.6 0.0 0.0043 16.5 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HNH PF01844.23 gi|284172666|ref|YP_003406048.1| - 9.5e-11 41.7 3.1 1.5e-10 41.1 3.1 1.4 1 0 0 1 1 1 1 HNH endonuclease HNH_2 PF13391.6 gi|284172666|ref|YP_003406048.1| - 0.00023 21.2 0.7 0.001 19.2 0.7 1.9 1 1 0 1 1 1 1 HNH endonuclease HNH_5 PF14279.6 gi|284172666|ref|YP_003406048.1| - 0.00076 19.3 1.5 0.0017 18.1 1.5 1.7 1 1 0 1 1 1 1 HNH endonuclease zf-UDP PF14569.6 gi|284172666|ref|YP_003406048.1| - 0.015 15.4 0.7 0.16 12.1 0.7 2.0 1 1 0 1 1 1 0 Zinc-binding RING-finger Sgf11 PF08209.11 gi|284172666|ref|YP_003406048.1| - 0.039 13.5 0.5 0.039 13.5 0.5 1.8 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_7 PF02591.15 gi|284172666|ref|YP_003406048.1| - 0.3 11.3 0.1 0.3 11.3 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain Sortilin-Vps10 PF15902.5 gi|284172667|ref|YP_003406049.1| - 2.7e-15 56.1 0.0 9.8e-10 37.8 0.0 2.4 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|284172667|ref|YP_003406049.1| - 1.2e-11 42.7 14.9 0.043 13.8 0.1 6.4 6 0 0 6 6 6 4 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|284172667|ref|YP_003406049.1| - 5.3e-07 29.2 2.4 0.018 14.3 0.1 3.2 2 1 0 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR_6 PF15899.5 gi|284172667|ref|YP_003406049.1| - 1.9e-05 24.3 0.1 1.1 9.5 0.0 4.6 4 0 0 4 4 4 1 BNR-Asp box repeat DUF4185 PF13810.6 gi|284172667|ref|YP_003406049.1| - 0.0012 18.2 3.6 4.5 6.4 0.8 3.9 2 2 1 4 4 4 3 Domain of unknown function (DUF4185) BNR_2 PF13088.6 gi|284172667|ref|YP_003406049.1| - 0.0019 17.5 5.5 3.2 7.0 1.6 4.6 1 1 2 4 4 4 1 BNR repeat-like domain Mo-co_dimer PF03404.16 gi|284172667|ref|YP_003406049.1| - 2.9 7.9 5.3 36 4.4 0.3 3.5 2 2 2 4 4 4 0 Mo-co oxidoreductase dimerisation domain BNR_3 PF13859.6 gi|284172667|ref|YP_003406049.1| - 4.1 6.6 4.5 39 3.4 0.7 3.3 3 1 0 3 3 3 0 BNR repeat-like domain BRCT_2 PF16589.5 gi|284172668|ref|YP_003406050.1| - 0.065 13.6 0.0 0.08 13.4 0.0 1.2 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain Pecanex_C PF05041.15 gi|284172669|ref|YP_003406051.1| - 0.058 13.0 0.0 0.07 12.7 0.0 1.1 1 0 0 1 1 1 0 Pecanex protein (C-terminus) Aldedh PF00171.22 gi|284172670|ref|YP_003406052.1| - 3.2e-165 550.1 0.0 3.8e-165 549.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Cupin_2 PF07883.11 gi|284172671|ref|YP_003406053.1| - 4.4e-19 68.0 0.4 5.9e-19 67.6 0.4 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|284172671|ref|YP_003406053.1| - 5.9e-06 25.9 0.0 7.4e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|284172671|ref|YP_003406053.1| - 1.5e-05 24.9 0.1 1.8e-05 24.6 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|284172671|ref|YP_003406053.1| - 0.0006 19.7 0.0 0.00098 19.0 0.0 1.3 1 1 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|284172671|ref|YP_003406053.1| - 0.0026 17.4 0.0 0.004 16.8 0.0 1.3 1 1 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|284172671|ref|YP_003406053.1| - 0.025 14.8 0.0 0.031 14.5 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_7 PF12973.7 gi|284172671|ref|YP_003406053.1| - 0.029 14.3 0.0 0.037 14.0 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain CDO_I PF05995.12 gi|284172671|ref|YP_003406053.1| - 0.071 12.4 0.0 0.15 11.4 0.0 1.4 1 1 0 1 1 1 0 Cysteine dioxygenase type I Cupin_6 PF12852.7 gi|284172671|ref|YP_003406053.1| - 0.085 12.6 0.1 0.097 12.4 0.1 1.1 1 0 0 1 1 1 0 Cupin EutQ PF06249.12 gi|284172671|ref|YP_003406053.1| - 0.1 12.4 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ Auxin_BP PF02041.16 gi|284172671|ref|YP_003406053.1| - 0.18 11.5 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Auxin binding protein NMT1 PF09084.11 gi|284172672|ref|YP_003406054.1| - 1.1e-06 28.8 0.0 0.0016 18.4 0.0 2.7 2 1 0 2 2 2 2 NMT1/THI5 like NMT1_2 PF13379.6 gi|284172672|ref|YP_003406054.1| - 0.0085 15.8 0.0 0.23 11.1 0.0 2.2 2 0 0 2 2 2 1 NMT1-like family SBP_bac_3 PF00497.20 gi|284172672|ref|YP_003406054.1| - 0.13 11.6 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|284172673|ref|YP_003406055.1| - 1.5e-07 31.6 0.0 2e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|284172673|ref|YP_003406055.1| - 0.00012 21.6 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|284172673|ref|YP_003406055.1| - 0.0004 20.1 0.0 0.00056 19.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|284172673|ref|YP_003406055.1| - 0.027 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 NMT1-like family VitK2_biosynth PF02621.14 gi|284172673|ref|YP_003406055.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 1 0 1 1 1 0 Menaquinone biosynthesis NMT1 PF09084.11 gi|284172674|ref|YP_003406056.1| - 5.2e-36 124.6 0.0 7.9e-36 124.0 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|284172674|ref|YP_003406056.1| - 7.2e-07 29.0 0.1 1e-06 28.5 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|284172674|ref|YP_003406056.1| - 0.00073 19.3 0.1 0.016 14.9 0.1 2.6 1 1 0 1 1 1 1 NMT1-like family Glyoxalase PF00903.25 gi|284172675|ref|YP_003406057.1| - 1.8e-11 44.3 0.6 6.3e-11 42.6 0.6 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284172675|ref|YP_003406057.1| - 3.2e-05 24.6 0.6 0.00018 22.2 0.6 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|284172675|ref|YP_003406057.1| - 0.019 14.9 0.0 0.055 13.4 0.0 1.8 1 1 0 1 1 1 0 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|284172675|ref|YP_003406057.1| - 0.021 15.1 0.1 0.029 14.6 0.1 1.2 1 0 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TrmB PF01978.19 gi|284172676|ref|YP_003406058.1| - 1.9e-05 24.4 0.0 3.8e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|284172676|ref|YP_003406058.1| - 0.00018 21.5 0.0 0.00039 20.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172676|ref|YP_003406058.1| - 0.0067 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.12 gi|284172676|ref|YP_003406058.1| - 0.052 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|284172676|ref|YP_003406058.1| - 0.067 12.7 0.0 0.067 12.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Dimerisation2 PF16864.5 gi|284172676|ref|YP_003406058.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HalX PF08663.10 gi|284172676|ref|YP_003406058.1| - 0.48 10.8 4.3 0.33 11.3 1.2 2.0 1 1 1 2 2 2 0 HalX domain ATPgrasp_Ter PF15632.6 gi|284172679|ref|YP_003406061.1| - 1.1e-05 25.2 0.0 2.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|284172679|ref|YP_003406061.1| - 0.0015 18.6 0.0 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|284172679|ref|YP_003406061.1| - 0.0064 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GATase_7 PF13537.6 gi|284172680|ref|YP_003406062.1| - 2.8e-11 43.4 0.0 6.1e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Asn_synthase PF00733.21 gi|284172680|ref|YP_003406062.1| - 7.2e-08 32.5 0.0 1.4e-07 31.5 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase GATase_6 PF13522.6 gi|284172680|ref|YP_003406062.1| - 1.1e-07 32.1 0.0 2.7e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.8 gi|284172680|ref|YP_003406062.1| - 4.3e-05 23.1 0.0 6.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Aluminium induced protein GvpK PF05121.12 gi|284172681|ref|YP_003406063.1| - 0.076 13.1 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Gas vesicle protein K Polysacc_lyase PF14099.6 gi|284172683|ref|YP_003406065.1| - 0.0057 16.5 0.1 0.0064 16.4 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide lyase Polysacc_deac_1 PF01522.21 gi|284172685|ref|YP_003406067.1| - 0.00015 21.7 0.3 0.0047 16.8 0.0 2.6 3 0 0 3 3 3 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|284172685|ref|YP_003406067.1| - 0.00027 20.7 0.0 0.017 14.8 0.0 2.5 1 1 1 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2334) DoxX PF07681.12 gi|284172686|ref|YP_003406068.1| - 0.033 14.8 0.1 0.07 13.7 0.1 1.4 1 0 0 1 1 1 0 DoxX DUF2417 PF10329.9 gi|284172686|ref|YP_003406068.1| - 0.05 13.0 0.0 0.064 12.7 0.0 1.1 1 0 0 1 1 1 0 Region of unknown function (DUF2417) zf-RING_7 PF02591.15 gi|284172687|ref|YP_003406069.1| - 0.066 13.4 1.4 4.8 7.4 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|284172687|ref|YP_003406069.1| - 0.24 11.5 3.2 0.53 10.4 3.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|284172687|ref|YP_003406069.1| - 1.3 9.1 5.6 11 6.0 5.6 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon HTH_10 PF04967.12 gi|284172688|ref|YP_003406070.1| - 3.6e-16 58.7 0.2 1.6e-14 53.4 0.2 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.6 gi|284172688|ref|YP_003406070.1| - 1.4e-08 34.1 0.2 0.0023 17.4 0.0 2.7 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|284172688|ref|YP_003406070.1| - 2e-08 33.7 0.0 1.5e-06 27.7 0.0 2.6 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_23 PF13384.6 gi|284172688|ref|YP_003406070.1| - 5.9e-08 32.3 2.4 0.01 15.6 0.1 3.7 4 0 0 4 4 3 2 Homeodomain-like domain MerR PF00376.23 gi|284172688|ref|YP_003406070.1| - 3.4e-07 29.9 0.4 0.0012 18.6 0.0 2.8 2 0 0 2 2 2 2 MerR family regulatory protein HTH_11 PF08279.12 gi|284172688|ref|YP_003406070.1| - 4.2e-07 29.8 0.3 0.0046 16.9 0.0 2.6 2 0 0 2 2 2 2 HTH domain HTH_5 PF01022.20 gi|284172688|ref|YP_003406070.1| - 6.2e-07 29.2 0.0 0.0002 21.1 0.0 3.4 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|284172688|ref|YP_003406070.1| - 1.6e-06 27.5 0.3 0.052 13.1 0.0 2.9 2 0 0 2 2 2 2 Sigma-70, region 4 GntR PF00392.21 gi|284172688|ref|YP_003406070.1| - 5.8e-06 25.9 0.8 5.8e-05 22.7 0.0 2.9 3 0 0 3 3 2 1 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|284172688|ref|YP_003406070.1| - 1.8e-05 24.3 0.4 0.0045 16.6 0.0 3.1 3 1 0 3 3 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|284172688|ref|YP_003406070.1| - 2.9e-05 24.1 0.8 0.00085 19.3 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284172688|ref|YP_003406070.1| - 5.8e-05 22.9 0.6 0.074 12.9 0.0 3.1 2 1 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|284172688|ref|YP_003406070.1| - 6.2e-05 22.7 0.8 0.15 11.9 0.0 3.2 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_3 PF01381.22 gi|284172688|ref|YP_003406070.1| - 8.2e-05 22.6 0.0 0.72 10.0 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix TetR_N PF00440.23 gi|284172688|ref|YP_003406070.1| - 0.00049 19.8 0.0 0.4 10.5 0.0 2.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.6 gi|284172688|ref|YP_003406070.1| - 0.00069 19.5 0.9 0.39 10.7 0.0 2.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|284172688|ref|YP_003406070.1| - 0.0016 18.4 1.4 1.5 8.9 0.1 3.2 3 0 0 3 3 2 1 Winged helix-turn helix MarR PF01047.22 gi|284172688|ref|YP_003406070.1| - 0.0055 16.6 0.1 0.34 10.9 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 gi|284172688|ref|YP_003406070.1| - 0.011 15.9 0.0 0.28 11.3 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|284172688|ref|YP_003406070.1| - 0.011 16.1 0.1 0.05 14.0 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|284172688|ref|YP_003406070.1| - 0.014 15.7 1.2 0.42 11.0 0.1 3.2 3 0 0 3 3 2 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|284172688|ref|YP_003406070.1| - 0.018 15.1 0.1 1.2 9.3 0.0 2.5 2 0 0 2 2 2 0 MerR HTH family regulatory protein Rrf2 PF02082.20 gi|284172688|ref|YP_003406070.1| - 0.019 15.3 0.1 3.9 7.9 0.0 3.0 3 0 0 3 3 3 0 Transcriptional regulator HTH_Tnp_1 PF01527.20 gi|284172688|ref|YP_003406070.1| - 0.02 15.2 0.0 0.25 11.7 0.0 2.5 2 0 0 2 2 2 0 Transposase HTH_Tnp_ISL3 PF13542.6 gi|284172688|ref|YP_003406070.1| - 0.022 14.1 0.2 6.7 6.2 0.1 3.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_1_2 PF13022.6 gi|284172688|ref|YP_003406070.1| - 0.027 14.6 0.1 0.31 11.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase HTH_AsnC-type PF13404.6 gi|284172688|ref|YP_003406070.1| - 0.031 14.1 3.8 0.95 9.3 0.2 3.5 3 1 0 3 3 2 0 AsnC-type helix-turn-helix domain HTH_7 PF02796.15 gi|284172688|ref|YP_003406070.1| - 0.032 14.3 0.0 0.14 12.3 0.0 2.1 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.11 gi|284172688|ref|YP_003406070.1| - 0.037 14.1 0.1 1.7 8.7 0.0 2.4 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 gi|284172688|ref|YP_003406070.1| - 0.054 13.7 0.1 3.1 8.1 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|284172688|ref|YP_003406070.1| - 0.061 13.1 0.7 0.27 11.0 0.1 2.4 2 0 0 2 2 2 0 LexA DNA binding domain HTH_19 PF12844.7 gi|284172688|ref|YP_003406070.1| - 0.062 13.3 0.0 17 5.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|284172688|ref|YP_003406070.1| - 0.068 12.9 0.7 8.4 6.2 0.1 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284172688|ref|YP_003406070.1| - 0.075 13.2 0.0 0.38 11.0 0.0 2.2 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.13 gi|284172688|ref|YP_003406070.1| - 0.091 12.9 0.0 18 5.5 0.0 2.5 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_IclR PF09339.10 gi|284172688|ref|YP_003406070.1| - 0.1 12.4 0.8 2.8 7.8 0.0 3.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|284172688|ref|YP_003406070.1| - 0.11 12.3 0.3 23 5.0 0.0 3.4 4 0 0 4 4 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LacI PF00356.21 gi|284172688|ref|YP_003406070.1| - 0.13 12.1 0.1 5.2 6.9 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family FaeA PF04703.12 gi|284172688|ref|YP_003406070.1| - 0.14 12.5 0.1 4.1 7.9 0.0 2.5 2 0 0 2 2 2 0 FaeA-like protein HTH_36 PF13730.6 gi|284172688|ref|YP_003406070.1| - 0.15 12.0 0.0 0.68 9.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.14 gi|284172689|ref|YP_003406071.1| - 1e-12 47.8 0.4 1.2e-12 47.6 0.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|284172689|ref|YP_003406071.1| - 0.017 15.1 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MethyTransf_Reg PF10119.9 gi|284172691|ref|YP_003406073.1| - 0.095 13.4 2.0 11 6.9 0.1 2.8 2 1 0 3 3 3 0 Predicted methyltransferase regulatory domain TRAM PF01938.20 gi|284172692|ref|YP_003406074.1| - 3.4e-14 52.6 3.0 5.6e-14 51.9 3.0 1.4 1 0 0 1 1 1 1 TRAM domain TrmB PF01978.19 gi|284172693|ref|YP_003406075.1| - 3.6e-21 74.8 0.1 6.8e-21 73.9 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|284172693|ref|YP_003406075.1| - 0.00038 19.7 0.0 0.00059 19.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB E2F_TDP PF02319.20 gi|284172693|ref|YP_003406075.1| - 0.0034 17.4 0.0 0.0071 16.4 0.0 1.6 1 0 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain MarR_2 PF12802.7 gi|284172693|ref|YP_003406075.1| - 0.014 15.2 0.1 0.034 14.0 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|284172693|ref|YP_003406075.1| - 0.017 15.2 0.4 0.21 11.7 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|284172693|ref|YP_003406075.1| - 0.079 12.8 0.5 0.21 11.4 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284172694|ref|YP_003406076.1| - 5e-05 23.3 0.0 9.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|284172695|ref|YP_003406077.1| - 1.1e-13 50.8 1.3 2.2e-13 49.8 1.3 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|284172695|ref|YP_003406077.1| - 1.2e-13 50.4 0.5 2e-13 49.7 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|284172695|ref|YP_003406077.1| - 7e-06 25.9 0.3 1.9e-05 24.5 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|284172695|ref|YP_003406077.1| - 1.1e-05 25.4 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|284172695|ref|YP_003406077.1| - 3.3e-05 23.7 0.0 6.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284172695|ref|YP_003406077.1| - 0.00033 20.3 0.4 0.00075 19.2 0.4 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|284172695|ref|YP_003406077.1| - 0.00058 20.3 0.1 0.0013 19.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|284172695|ref|YP_003406077.1| - 0.00071 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|284172695|ref|YP_003406077.1| - 0.0019 17.9 0.0 0.0052 16.5 0.0 1.8 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|284172695|ref|YP_003406077.1| - 0.0022 17.8 0.0 0.0043 16.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|284172695|ref|YP_003406077.1| - 0.0041 16.9 0.0 0.0077 16.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|284172695|ref|YP_003406077.1| - 0.0091 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|284172695|ref|YP_003406077.1| - 0.015 15.3 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_CodY PF08222.11 gi|284172695|ref|YP_003406077.1| - 0.017 14.7 0.0 0.038 13.5 0.0 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain GntR PF00392.21 gi|284172695|ref|YP_003406077.1| - 0.021 14.5 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|284172695|ref|YP_003406077.1| - 0.029 14.5 0.1 0.21 11.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|284172695|ref|YP_003406077.1| - 0.045 13.6 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.20 gi|284172695|ref|YP_003406077.1| - 0.05 13.9 0.0 0.29 11.5 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|284172695|ref|YP_003406077.1| - 0.11 12.8 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|284172695|ref|YP_003406077.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|284172695|ref|YP_003406077.1| - 0.13 12.7 0.0 0.36 11.2 0.0 1.7 2 0 0 2 2 2 0 FaeA-like protein HTH_45 PF14947.6 gi|284172695|ref|YP_003406077.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|284172695|ref|YP_003406077.1| - 0.17 11.6 0.1 0.39 10.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|284172695|ref|YP_003406077.1| - 0.2 11.1 0.5 0.36 10.3 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Git3 PF11710.8 gi|284172696|ref|YP_003406078.1| - 0.03 14.1 0.3 0.03 14.1 0.3 2.2 2 1 0 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 DUF5409 PF17421.2 gi|284172696|ref|YP_003406078.1| - 0.1 13.3 2.1 3.2 8.5 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5409) FTP PF07504.13 gi|284172696|ref|YP_003406078.1| - 0.13 12.1 0.4 0.25 11.2 0.4 1.4 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif IgGFc_binding PF17517.2 gi|284172697|ref|YP_003406079.1| - 0.03 13.6 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 IgGFc binding protein HTH_38 PF13936.6 gi|284172699|ref|YP_003406081.1| - 0.0051 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HHH_8 PF14716.6 gi|284172699|ref|YP_003406081.1| - 0.023 15.1 0.4 0.05 14.0 0.4 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_11 PF08279.12 gi|284172699|ref|YP_003406081.1| - 0.04 13.9 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain AIP3 PF03915.13 gi|284172699|ref|YP_003406081.1| - 0.046 12.8 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 HTH_29 PF13551.6 gi|284172699|ref|YP_003406081.1| - 0.047 13.7 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|284172699|ref|YP_003406081.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain bPH_2 PF03703.14 gi|284172701|ref|YP_003406083.1| - 3.5e-18 65.6 0.1 4.5e-18 65.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|284172702|ref|YP_003406084.1| - 5.7e-42 141.8 4.2 2e-15 56.7 0.1 3.4 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|284172702|ref|YP_003406084.1| - 2.1e-06 27.7 0.0 0.0074 16.3 0.0 3.3 4 0 0 4 4 4 2 Bacterial PH domain bPH_5 PF10882.8 gi|284172702|ref|YP_003406084.1| - 0.025 14.6 0.0 3.4 7.8 0.0 3.1 3 0 0 3 3 3 0 Bacterial PH domain DUF5079 PF16882.5 gi|284172702|ref|YP_003406084.1| - 0.089 12.7 8.5 0.25 11.2 2.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5079) Peptidase_S8 PF00082.22 gi|284172707|ref|YP_003406089.1| - 3.3e-45 154.6 5.9 3.3e-45 154.6 5.9 2.5 2 1 0 2 2 2 1 Subtilase family PKD PF00801.20 gi|284172707|ref|YP_003406089.1| - 8.7e-08 31.9 3.6 8.7e-08 31.9 3.6 3.8 3 0 0 3 3 3 1 PKD domain ASH PF15780.5 gi|284172707|ref|YP_003406089.1| - 0.0032 17.6 2.8 0.0039 17.4 0.4 2.4 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin TMEM131_like PF12371.8 gi|284172707|ref|YP_003406089.1| - 0.016 15.5 0.0 0.055 13.7 0.0 2.0 1 0 0 1 1 1 0 Transmembrane protein 131-like Motile_Sperm PF00635.26 gi|284172707|ref|YP_003406089.1| - 0.018 14.9 0.1 0.05 13.4 0.1 1.8 1 0 0 1 1 1 0 MSP (Major sperm protein) domain DUF1573 PF07610.11 gi|284172707|ref|YP_003406089.1| - 0.019 15.0 0.0 0.086 12.9 0.0 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1573) DUF3332 PF11810.8 gi|284172708|ref|YP_003406090.1| - 0.17 11.5 0.1 0.22 11.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3332) Phage_integrase PF00589.22 gi|284172709|ref|YP_003406091.1| - 1e-14 54.7 0.0 2.3e-13 50.3 0.0 2.4 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|284172709|ref|YP_003406091.1| - 1.7e-05 25.2 0.0 0.0013 19.1 0.0 2.8 3 1 1 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|284172709|ref|YP_003406091.1| - 0.00016 21.9 0.1 0.0007 19.8 0.0 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|284172709|ref|YP_003406091.1| - 0.0027 18.0 0.0 0.0053 17.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase SAM-like domain HTH_10 PF04967.12 gi|284172711|ref|YP_003406093.1| - 1.4e-19 69.6 0.1 2.9e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|284172711|ref|YP_003406093.1| - 9.1e-05 21.9 0.5 0.00021 20.7 0.5 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|284172711|ref|YP_003406093.1| - 0.00011 22.0 0.1 0.0002 21.1 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_Tnp_1_2 PF13022.6 gi|284172711|ref|YP_003406093.1| - 0.0012 19.0 0.0 0.0025 18.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|284172711|ref|YP_003406093.1| - 0.01 15.5 0.1 0.43 10.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|284172711|ref|YP_003406093.1| - 0.011 15.8 0.1 0.023 14.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r3 PF04539.16 gi|284172711|ref|YP_003406093.1| - 0.015 15.4 0.2 0.078 13.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_28 PF13518.6 gi|284172711|ref|YP_003406093.1| - 0.016 15.3 0.0 0.035 14.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|284172711|ref|YP_003406093.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|284172711|ref|YP_003406093.1| - 0.026 14.5 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|284172711|ref|YP_003406093.1| - 0.027 14.5 0.2 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|284172711|ref|YP_003406093.1| - 0.033 14.1 0.1 0.077 13.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_17 PF12728.7 gi|284172711|ref|YP_003406093.1| - 0.045 14.0 0.0 0.085 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172711|ref|YP_003406093.1| - 0.056 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.19 gi|284172711|ref|YP_003406093.1| - 0.057 13.6 0.1 0.13 12.5 0.1 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_31 PF13560.6 gi|284172711|ref|YP_003406093.1| - 0.06 13.7 2.3 0.54 10.7 0.3 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172711|ref|YP_003406093.1| - 0.062 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AbiEi_4 PF13338.6 gi|284172711|ref|YP_003406093.1| - 0.065 13.4 0.1 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin TetR_N PF00440.23 gi|284172711|ref|YP_003406093.1| - 0.065 13.0 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family YdaS_antitoxin PF15943.5 gi|284172711|ref|YP_003406093.1| - 0.069 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 gi|284172711|ref|YP_003406093.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Cupin_2 PF07883.11 gi|284172712|ref|YP_003406094.1| - 1.1e-08 34.6 0.3 1.8e-08 33.9 0.3 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|284172712|ref|YP_003406094.1| - 0.00061 19.7 0.5 0.00093 19.1 0.5 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.7 gi|284172712|ref|YP_003406094.1| - 0.038 13.9 0.0 0.067 13.1 0.0 1.5 1 1 0 1 1 1 0 ChrR Cupin-like domain adh_short PF00106.25 gi|284172713|ref|YP_003406095.1| - 1.1e-57 194.6 0.2 1.5e-57 194.2 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|284172713|ref|YP_003406095.1| - 3.7e-50 170.7 0.2 4.4e-50 170.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|284172713|ref|YP_003406095.1| - 2e-14 53.9 0.6 2.4e-14 53.6 0.6 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172713|ref|YP_003406095.1| - 0.00019 21.0 0.9 0.0003 20.3 0.4 1.6 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|284172713|ref|YP_003406095.1| - 0.0069 15.7 0.1 0.032 13.5 0.0 2.0 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|284172713|ref|YP_003406095.1| - 0.012 15.6 2.0 0.016 15.1 2.0 1.6 1 1 0 1 1 1 0 NAD(P)H-binding HEM4 PF02602.15 gi|284172713|ref|YP_003406095.1| - 0.032 13.6 0.2 0.069 12.5 0.1 1.5 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD DDE_Tnp_1 PF01609.21 gi|284172714|ref|YP_003406096.1| - 1.5e-14 54.2 3.2 2.2e-14 53.6 3.2 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|284172714|ref|YP_003406096.1| - 1.6e-06 28.4 0.2 2.9e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|284172714|ref|YP_003406096.1| - 0.0083 16.1 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|284172714|ref|YP_003406096.1| - 0.017 15.1 0.2 0.045 13.8 0.0 1.9 2 0 0 2 2 2 0 Transposase domain (DUF772) DDE_Tnp_1_5 PF13737.6 gi|284172714|ref|YP_003406096.1| - 0.03 14.6 0.0 0.068 13.5 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain sCache_2 PF17200.4 gi|284172715|ref|YP_003406097.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Single Cache domain 2 MOSC PF03473.17 gi|284172716|ref|YP_003406098.1| - 1.3e-05 25.2 0.0 1.8e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 MOSC domain DUF1451 PF07295.11 gi|284172716|ref|YP_003406098.1| - 0.029 14.4 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Cys_Met_Meta_PP PF01053.20 gi|284172717|ref|YP_003406099.1| - 2e-128 428.2 0.0 2.3e-128 428.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|284172717|ref|YP_003406099.1| - 4.3e-08 32.9 0.4 2.3e-07 30.4 0.1 2.1 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|284172717|ref|YP_003406099.1| - 0.0018 17.3 0.0 0.0042 16.1 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|284172717|ref|YP_003406099.1| - 0.0028 16.9 0.0 0.0037 16.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284172717|ref|YP_003406099.1| - 0.0039 16.5 0.0 0.012 14.9 0.0 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase DUF4188 PF13826.6 gi|284172718|ref|YP_003406100.1| - 3.7e-09 36.9 0.2 4.2e-09 36.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) ABM PF03992.16 gi|284172718|ref|YP_003406100.1| - 8.9e-07 28.9 0.3 1.4e-06 28.3 0.3 1.3 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF3291 PF11695.8 gi|284172718|ref|YP_003406100.1| - 0.0011 18.6 1.4 0.0022 17.7 1.4 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF3291) DUF3303 PF11746.8 gi|284172718|ref|YP_003406100.1| - 0.0037 17.5 0.3 0.04 14.2 0.3 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3303) SOAR PF16533.5 gi|284172720|ref|YP_003406102.1| - 0.015 15.3 0.1 0.016 15.2 0.1 1.1 1 0 0 1 1 1 0 STIM1 Orai1-activating region Sulfatase PF00884.23 gi|284172722|ref|YP_003406104.1| - 1.5e-55 188.7 0.0 2e-55 188.4 0.0 1.1 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|284172722|ref|YP_003406104.1| - 3.1e-06 27.4 0.0 0.00073 19.8 0.1 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|284172722|ref|YP_003406104.1| - 0.00012 21.8 0.0 0.0041 16.8 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|284172722|ref|YP_003406104.1| - 0.0024 17.3 0.0 0.0044 16.4 0.0 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase_C PF14707.6 gi|284172722|ref|YP_003406104.1| - 0.014 16.2 0.0 0.028 15.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF229 PF02995.17 gi|284172722|ref|YP_003406104.1| - 0.038 12.6 0.0 0.13 10.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF229) IclR PF01614.18 gi|284172723|ref|YP_003406105.1| - 6e-33 113.4 0.1 2.2e-32 111.6 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172723|ref|YP_003406105.1| - 1.1e-08 34.7 0.0 2.2e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172723|ref|YP_003406105.1| - 4.6e-07 29.6 0.0 7.6e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284172723|ref|YP_003406105.1| - 9e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|284172723|ref|YP_003406105.1| - 2.1e-05 24.5 0.0 5.6e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284172723|ref|YP_003406105.1| - 3.8e-05 23.5 0.1 0.0001 22.1 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|284172723|ref|YP_003406105.1| - 0.0007 19.5 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|284172723|ref|YP_003406105.1| - 0.0034 17.1 0.1 0.0072 16.1 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|284172723|ref|YP_003406105.1| - 0.0044 16.9 0.0 0.0084 16.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|284172723|ref|YP_003406105.1| - 0.015 15.5 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|284172723|ref|YP_003406105.1| - 0.02 14.7 0.0 0.06 13.2 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284172723|ref|YP_003406105.1| - 0.028 14.3 0.0 0.066 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|284172723|ref|YP_003406105.1| - 0.033 14.0 0.7 0.16 11.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|284172723|ref|YP_003406105.1| - 0.039 14.1 0.0 0.074 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|284172723|ref|YP_003406105.1| - 0.047 13.5 0.0 0.097 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain TetR_N PF00440.23 gi|284172723|ref|YP_003406105.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family ABC_tran PF00005.27 gi|284172724|ref|YP_003406106.1| - 8e-35 120.3 0.0 1.4e-34 119.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|284172724|ref|YP_003406106.1| - 1.9e-10 41.4 0.0 1.3e-09 38.7 0.0 2.5 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|284172724|ref|YP_003406106.1| - 5.3e-09 36.1 0.0 1.5e-08 34.7 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|284172724|ref|YP_003406106.1| - 1.8e-08 34.6 0.0 0.0042 17.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|284172724|ref|YP_003406106.1| - 1.6e-05 24.4 0.1 4.8e-05 22.9 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|284172724|ref|YP_003406106.1| - 2.4e-05 24.5 0.0 5.4e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|284172724|ref|YP_003406106.1| - 0.00056 20.4 0.0 0.0097 16.5 0.0 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_22 PF13401.6 gi|284172724|ref|YP_003406106.1| - 0.0013 19.1 1.3 0.012 15.9 1.3 2.2 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|284172724|ref|YP_003406106.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|284172724|ref|YP_003406106.1| - 0.0016 18.9 0.0 0.0028 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284172724|ref|YP_003406106.1| - 0.0018 18.2 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|284172724|ref|YP_003406106.1| - 0.0052 17.3 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|284172724|ref|YP_003406106.1| - 0.0059 16.4 0.0 0.19 11.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain G-alpha PF00503.20 gi|284172724|ref|YP_003406106.1| - 0.0077 15.4 0.0 0.01 15.0 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit AAA_29 PF13555.6 gi|284172724|ref|YP_003406106.1| - 0.014 15.1 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|284172724|ref|YP_003406106.1| - 0.021 14.2 0.0 0.036 13.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|284172724|ref|YP_003406106.1| - 0.063 12.9 0.0 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|284172724|ref|YP_003406106.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|284172724|ref|YP_003406106.1| - 0.14 11.9 1.2 1.9 8.2 1.3 2.2 1 1 0 1 1 1 0 Cytidylate kinase AAA_28 PF13521.6 gi|284172724|ref|YP_003406106.1| - 0.15 12.3 0.0 0.37 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Glyco_hydro_4C PF11975.8 gi|284172725|ref|YP_003406107.1| - 1e-64 218.4 0.0 1.6e-64 217.9 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 gi|284172725|ref|YP_003406107.1| - 1.8e-60 203.6 0.1 2.7e-60 203.1 0.1 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Ldh_1_N PF00056.23 gi|284172725|ref|YP_003406107.1| - 0.044 13.9 0.8 7.1 6.7 0.0 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|284172725|ref|YP_003406107.1| - 0.13 12.2 0.0 1.3 9.0 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SBP_bac_1 PF01547.25 gi|284172726|ref|YP_003406108.1| - 7.2e-14 52.5 0.2 2.2e-13 50.9 0.1 1.9 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|284172726|ref|YP_003406108.1| - 0.00056 19.6 0.3 0.00092 19.0 0.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence P22_Tail-4 PF11650.8 gi|284172726|ref|YP_003406108.1| - 0.11 12.5 0.7 2 8.3 0.1 2.2 2 0 0 2 2 2 0 P22 tail accessory factor BPD_transp_1 PF00528.22 gi|284172727|ref|YP_003406109.1| - 5.2e-20 72.0 18.6 5.2e-20 72.0 18.6 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4748 PF15932.5 gi|284172727|ref|YP_003406109.1| - 0.3 10.8 2.9 0.23 11.2 1.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4748) BPD_transp_1 PF00528.22 gi|284172728|ref|YP_003406110.1| - 3.1e-21 76.0 13.1 3.1e-21 76.0 13.1 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component MR_MLE_C PF13378.6 gi|284172729|ref|YP_003406111.1| - 1.5e-64 217.6 0.2 2.1e-64 217.1 0.2 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|284172729|ref|YP_003406111.1| - 6.5e-25 87.6 0.0 1.2e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 gi|284172730|ref|YP_003406112.1| - 2.1e-65 220.6 0.3 2.6e-65 220.3 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|284172730|ref|YP_003406112.1| - 6.3e-49 166.1 0.0 7.5e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|284172730|ref|YP_003406112.1| - 2.8e-10 40.4 0.1 3.9e-10 39.9 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|284172730|ref|YP_003406112.1| - 0.0012 18.4 0.1 0.0015 18.0 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|284172730|ref|YP_003406112.1| - 0.16 11.9 0.4 0.24 11.3 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_hydro_32N PF00251.20 gi|284172731|ref|YP_003406113.1| - 5.2e-72 243.0 3.3 6.5e-72 242.7 3.3 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|284172731|ref|YP_003406113.1| - 8.8e-30 103.8 0.1 2e-29 102.6 0.1 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 C terminal MOSC PF03473.17 gi|284172731|ref|YP_003406113.1| - 0.028 14.4 0.1 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 MOSC domain GlcNAc_2-epim PF07221.11 gi|284172733|ref|YP_003406115.1| - 8.4e-51 173.2 6.4 3.4e-48 164.7 6.4 2.0 1 1 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|284172733|ref|YP_003406115.1| - 2.5e-07 30.6 1.4 0.0032 17.1 0.1 2.4 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 LANC_like PF05147.13 gi|284172733|ref|YP_003406115.1| - 3.8e-05 22.5 0.1 0.089 11.3 0.0 2.9 4 0 0 4 4 4 2 Lanthionine synthetase C-like protein Glyco_hydro_88 PF07470.13 gi|284172733|ref|YP_003406115.1| - 0.00023 20.3 3.8 0.076 12.1 0.2 2.7 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 gi|284172733|ref|YP_003406115.1| - 0.009 14.5 0.1 0.84 8.1 0.0 2.2 2 0 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 C5-epim_C PF06662.13 gi|284172733|ref|YP_003406115.1| - 0.055 13.0 0.1 2.4 7.6 0.0 2.5 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus GFO_IDH_MocA PF01408.22 gi|284172734|ref|YP_003406116.1| - 3e-18 66.8 0.0 7.9e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold CaATP_NAI PF12515.8 gi|284172734|ref|YP_003406116.1| - 0.19 11.4 2.0 0.23 11.1 0.5 1.9 2 0 0 2 2 2 0 Ca2+-ATPase N terminal autoinhibitory domain AP_endonuc_2 PF01261.24 gi|284172735|ref|YP_003406117.1| - 4.3e-20 72.0 2.4 4.3e-20 72.0 2.4 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1129 PF06570.11 gi|284172736|ref|YP_003406118.1| - 0.046 13.2 1.3 0.049 13.1 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2976 PF11190.8 gi|284172736|ref|YP_003406118.1| - 0.13 12.0 2.1 0.16 11.8 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF2207 PF09972.9 gi|284172736|ref|YP_003406118.1| - 0.64 8.7 1.8 0.71 8.6 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC_tran PF00005.27 gi|284172737|ref|YP_003406119.1| - 2.3e-28 99.4 0.0 3.1e-28 99.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172737|ref|YP_003406119.1| - 3.9e-15 56.1 0.1 6.8e-15 55.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|284172737|ref|YP_003406119.1| - 0.00044 20.5 2.4 0.013 15.7 2.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|284172737|ref|YP_003406119.1| - 0.00073 19.4 0.3 1.1 9.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|284172737|ref|YP_003406119.1| - 0.042 13.6 0.0 0.079 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|284172737|ref|YP_003406119.1| - 0.065 12.4 0.1 0.11 11.7 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain PduV-EutP PF10662.9 gi|284172737|ref|YP_003406119.1| - 0.15 11.8 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ATPase PF06745.13 gi|284172737|ref|YP_003406119.1| - 0.22 10.9 0.0 0.68 9.2 0.1 1.7 2 0 0 2 2 2 0 KaiC PhoH PF02562.16 gi|284172737|ref|YP_003406119.1| - 0.24 10.8 0.1 0.4 10.1 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|284172738|ref|YP_003406120.1| - 4.4e-22 79.1 0.0 6.2e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|284172738|ref|YP_003406120.1| - 1.8e-20 73.2 0.3 3.9e-20 72.1 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|284172738|ref|YP_003406120.1| - 1.2e-06 28.6 1.3 1.2e-06 28.6 1.3 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|284172738|ref|YP_003406120.1| - 0.00023 21.4 1.1 0.013 15.7 1.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|284172738|ref|YP_003406120.1| - 0.00054 19.5 0.1 0.3 10.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|284172738|ref|YP_003406120.1| - 0.011 16.1 0.8 0.024 15.0 0.8 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|284172738|ref|YP_003406120.1| - 0.014 15.0 0.0 0.033 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|284172738|ref|YP_003406120.1| - 0.015 15.1 0.1 0.03 14.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|284172738|ref|YP_003406120.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.17 gi|284172738|ref|YP_003406120.1| - 0.072 13.2 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain ABC_ATPase PF09818.9 gi|284172738|ref|YP_003406120.1| - 0.085 11.6 0.1 0.3 9.8 0.1 1.8 1 1 0 1 1 1 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|284172738|ref|YP_003406120.1| - 0.091 12.5 0.1 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|284172738|ref|YP_003406120.1| - 0.17 11.9 0.2 0.63 10.0 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 gi|284172739|ref|YP_003406121.1| - 1.4e-26 93.4 13.2 1.4e-26 93.4 13.2 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|284172740|ref|YP_003406122.1| - 8.9e-36 123.4 11.4 8.9e-36 123.4 11.4 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|284172740|ref|YP_003406122.1| - 0.18 12.4 0.3 0.18 12.4 0.3 2.8 3 0 0 3 3 3 0 Renin receptor-like protein Claudin_2 PF13903.6 gi|284172740|ref|YP_003406122.1| - 0.78 9.5 5.2 0.11 12.3 0.5 1.9 2 1 1 3 3 3 0 PMP-22/EMP/MP20/Claudin tight junction SBP_bac_5 PF00496.22 gi|284172741|ref|YP_003406123.1| - 2.6e-43 148.4 1.5 3.4e-43 148.0 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|284172741|ref|YP_003406123.1| - 0.00039 20.1 3.5 0.00063 19.5 3.5 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.22 gi|284172742|ref|YP_003406124.1| - 6.5e-20 72.1 0.0 1.3e-19 71.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|284172742|ref|YP_003406124.1| - 5.2e-06 26.5 0.2 1e-05 25.5 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|284172742|ref|YP_003406124.1| - 1.2e-05 24.8 0.0 2.2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|284172742|ref|YP_003406124.1| - 1.5e-05 25.2 0.0 0.00011 22.4 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|284172742|ref|YP_003406124.1| - 0.0009 19.5 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|284172742|ref|YP_003406124.1| - 0.0057 16.2 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|284172742|ref|YP_003406124.1| - 0.0065 16.0 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family CoA_binding PF02629.19 gi|284172742|ref|YP_003406124.1| - 0.0099 16.5 0.0 0.027 15.1 0.0 1.7 1 0 0 1 1 1 1 CoA binding domain G6PD_N PF00479.22 gi|284172742|ref|YP_003406124.1| - 0.021 15.5 0.0 0.041 14.5 0.0 1.5 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284172742|ref|YP_003406124.1| - 0.094 12.3 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain IclR PF01614.18 gi|284172743|ref|YP_003406125.1| - 7.2e-35 119.6 0.1 1.5e-34 118.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172743|ref|YP_003406125.1| - 1.3e-09 37.7 0.0 2.3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284172743|ref|YP_003406125.1| - 2.1e-05 24.5 0.0 4.6e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172743|ref|YP_003406125.1| - 0.0003 20.6 0.1 0.00053 19.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|284172743|ref|YP_003406125.1| - 0.00079 18.9 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284172743|ref|YP_003406125.1| - 0.00081 19.2 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|284172743|ref|YP_003406125.1| - 0.0043 16.8 1.3 0.0087 15.8 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|284172743|ref|YP_003406125.1| - 0.0057 16.6 0.0 0.015 15.2 0.0 1.8 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|284172743|ref|YP_003406125.1| - 0.0077 16.4 0.1 0.017 15.3 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|284172743|ref|YP_003406125.1| - 0.0087 15.9 0.1 0.12 12.2 0.0 2.5 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|284172743|ref|YP_003406125.1| - 0.012 16.1 0.2 0.022 15.2 0.2 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|284172743|ref|YP_003406125.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family SpoIIID PF12116.8 gi|284172743|ref|YP_003406125.1| - 0.026 14.6 0.3 0.053 13.6 0.3 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D DinB_2 PF12867.7 gi|284172743|ref|YP_003406125.1| - 0.027 15.0 0.0 2.3 8.8 0.0 2.3 2 0 0 2 2 2 0 DinB superfamily HTH_40 PF14493.6 gi|284172743|ref|YP_003406125.1| - 0.033 14.6 0.1 0.081 13.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|284172743|ref|YP_003406125.1| - 0.036 13.6 0.1 0.064 12.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.20 gi|284172743|ref|YP_003406125.1| - 0.055 13.8 0.1 0.11 12.8 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator Usp PF00582.26 gi|284172744|ref|YP_003406126.1| - 4.9e-09 36.8 0.2 6.6e-09 36.4 0.2 1.2 1 0 0 1 1 1 1 Universal stress protein family HutP PF09021.11 gi|284172744|ref|YP_003406126.1| - 0.0066 16.8 0.1 0.0085 16.4 0.1 1.2 1 0 0 1 1 1 1 HutP Ig_mannosidase PF17753.1 gi|284172745|ref|YP_003406127.1| - 4e-14 52.1 0.0 1.9e-13 49.9 0.0 2.2 1 0 0 1 1 1 1 Ig-fold domain Mannosidase_ig PF17786.1 gi|284172745|ref|YP_003406127.1| - 6.7e-12 45.9 0.0 3.3e-11 43.6 0.0 2.3 2 0 0 2 2 2 1 Mannosidase Ig/CBM-like domain Glyco_hydro_2_N PF02837.18 gi|284172745|ref|YP_003406127.1| - 6.4e-08 32.7 0.0 4e-07 30.1 0.0 2.3 2 1 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|284172745|ref|YP_003406127.1| - 2.6e-06 28.1 2.9 3e-06 27.9 0.3 2.3 3 0 0 3 3 3 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.17 gi|284172745|ref|YP_003406127.1| - 0.012 14.7 0.0 0.069 12.2 0.0 2.1 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain Ig_GlcNase PF18368.1 gi|284172745|ref|YP_003406127.1| - 0.027 14.6 0.0 0.11 12.6 0.0 2.1 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain Cadherin-like PF12733.7 gi|284172745|ref|YP_003406127.1| - 0.18 12.3 4.9 3.6 8.2 0.0 3.8 4 0 0 4 4 4 0 Cadherin-like beta sandwich domain UxuA PF03786.13 gi|284172746|ref|YP_003406128.1| - 9.3e-77 258.2 0.0 6.2e-59 199.6 0.0 2.0 1 1 0 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|284172746|ref|YP_003406128.1| - 5.1e-14 52.2 0.0 8.3e-14 51.5 0.0 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Cellulase PF00150.18 gi|284172747|ref|YP_003406129.1| - 5.6e-18 65.4 0.4 8.2e-18 64.8 0.4 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.8 gi|284172747|ref|YP_003406129.1| - 0.00025 20.7 0.0 0.0019 17.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolase catalytic core Glyco_hydro_42 PF02449.15 gi|284172747|ref|YP_003406129.1| - 0.0012 18.2 0.1 0.0024 17.3 0.1 1.4 1 1 0 1 1 1 1 Beta-galactosidase Glyco_hydro_2_C PF02836.17 gi|284172747|ref|YP_003406129.1| - 0.018 14.2 0.0 0.042 13.0 0.0 1.4 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, TIM barrel domain AP_endonuc_2 PF01261.24 gi|284172747|ref|YP_003406129.1| - 0.039 13.4 0.2 0.14 11.6 0.1 1.9 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel CBM_35 PF16990.5 gi|284172748|ref|YP_003406130.1| - 1.4e-22 80.2 1.1 2.8e-22 79.2 1.1 1.5 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) Cellulase PF00150.18 gi|284172748|ref|YP_003406130.1| - 3.3e-14 53.0 3.9 7.3e-14 51.9 3.5 1.7 2 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) DUF5010_C PF18099.1 gi|284172748|ref|YP_003406130.1| - 1.4e-06 28.4 0.1 3.8e-06 27.0 0.1 1.7 1 0 0 1 1 1 1 DUF5010 C-terminal domain Endotoxin_C PF03944.14 gi|284172748|ref|YP_003406130.1| - 0.0016 18.8 2.0 0.0022 18.4 1.2 1.6 2 0 0 2 2 2 1 delta endotoxin Melibiase_2 PF16499.5 gi|284172749|ref|YP_003406131.1| - 4.7e-84 281.9 2.7 6.9e-84 281.4 2.7 1.3 1 0 0 1 1 1 1 Alpha galactosidase A Melibiase_C PF17801.1 gi|284172749|ref|YP_003406131.1| - 2.1e-17 62.9 0.3 5.6e-17 61.6 0.3 1.7 1 0 0 1 1 1 1 Alpha galactosidase C-terminal beta sandwich domain Melibiase PF02065.18 gi|284172749|ref|YP_003406131.1| - 6e-10 38.6 0.0 1.7e-09 37.1 0.0 1.7 2 0 0 2 2 2 1 Melibiase NPCBM_assoc PF10633.9 gi|284172749|ref|YP_003406131.1| - 8.8e-10 38.7 2.2 4e-09 36.6 0.3 2.9 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Raffinose_syn PF05691.12 gi|284172749|ref|YP_003406131.1| - 0.00099 17.0 0.1 0.0015 16.5 0.1 1.1 1 0 0 1 1 1 1 Raffinose synthase or seed imbibition protein Sip1 DUF11 PF01345.18 gi|284172749|ref|YP_003406131.1| - 0.021 15.1 3.2 0.087 13.1 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function DUF11 EamA PF00892.20 gi|284172750|ref|YP_003406132.1| - 6e-38 130.1 46.2 5.4e-22 78.4 22.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|284172750|ref|YP_003406132.1| - 0.013 15.0 12.0 0.017 14.7 12.0 1.2 1 0 0 1 1 1 0 Solute carrier family 35 TMEM234 PF10639.9 gi|284172750|ref|YP_003406132.1| - 0.019 15.0 2.5 0.019 15.0 2.5 2.1 2 0 0 2 2 2 0 Putative transmembrane family 234 Nitroreductase PF00881.24 gi|284172750|ref|YP_003406132.1| - 0.24 11.4 0.8 11 6.0 0.1 2.4 1 1 1 2 2 2 0 Nitroreductase family TPT PF03151.16 gi|284172750|ref|YP_003406132.1| - 1 8.6 13.0 2.9 7.2 12.9 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family Usp PF00582.26 gi|284172751|ref|YP_003406133.1| - 1e-21 77.9 1.8 1.2e-21 77.7 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_88 PF07470.13 gi|284172754|ref|YP_003406136.1| - 1.4e-54 185.5 0.0 2.1e-54 184.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 SQHop_cyclase_C PF13243.6 gi|284172754|ref|YP_003406136.1| - 0.0076 15.4 0.1 2.5 7.1 0.0 2.1 1 1 0 2 2 2 2 Squalene-hopene cyclase C-terminal domain C5-epim_C PF06662.13 gi|284172754|ref|YP_003406136.1| - 0.068 12.7 0.0 0.34 10.4 0.0 2.0 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus Shikimate_dh_N PF08501.11 gi|284172755|ref|YP_003406137.1| - 7.4e-26 90.2 0.0 1.7e-25 89.1 0.0 1.6 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|284172755|ref|YP_003406137.1| - 2e-10 40.2 0.4 5.5e-10 38.8 0.4 1.8 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|284172755|ref|YP_003406137.1| - 2.9e-10 40.3 0.0 4.5e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|284172755|ref|YP_003406137.1| - 0.0013 18.1 0.0 0.0022 17.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|284172755|ref|YP_003406137.1| - 0.002 17.7 0.1 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|284172755|ref|YP_003406137.1| - 0.0038 17.8 0.3 0.0077 16.8 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|284172755|ref|YP_003406137.1| - 0.014 15.9 0.0 0.021 15.3 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 gi|284172755|ref|YP_003406137.1| - 0.1 12.0 0.4 0.17 11.3 0.4 1.3 1 0 0 1 1 1 0 short chain dehydrogenase THF_DHG_CYH_C PF02882.19 gi|284172755|ref|YP_003406137.1| - 0.16 11.3 0.0 0.34 10.2 0.0 1.4 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_3 PF13738.6 gi|284172755|ref|YP_003406137.1| - 0.17 11.1 0.1 0.22 10.7 0.1 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TubC_N PF18563.1 gi|284172756|ref|YP_003406138.1| - 0.12 12.4 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 TubC N-terminal docking domain FAA_hydrolase PF01557.18 gi|284172757|ref|YP_003406139.1| - 9.2e-48 162.8 0.0 1.1e-47 162.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Lactate_perm PF02652.14 gi|284172758|ref|YP_003406140.1| - 2.8e-98 330.0 38.9 5.4e-97 325.7 38.9 2.3 1 1 0 1 1 1 1 L-lactate permease RIC3 PF15361.6 gi|284172758|ref|YP_003406140.1| - 0.53 10.7 3.0 0.49 10.8 0.1 2.0 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 LUD_dom PF02589.15 gi|284172759|ref|YP_003406141.1| - 1.1e-11 44.8 0.0 2.7e-11 43.5 0.0 1.6 2 0 0 2 2 2 1 LUD domain LUD_dom PF02589.15 gi|284172760|ref|YP_003406142.1| - 2e-43 148.3 0.1 3.7e-43 147.5 0.1 1.5 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|284172760|ref|YP_003406142.1| - 6.4e-08 32.9 4.3 1.4e-07 31.8 4.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|284172760|ref|YP_003406142.1| - 3.3e-07 30.3 2.9 0.0015 18.6 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284172760|ref|YP_003406142.1| - 4.4e-07 29.9 0.5 1.3e-06 28.5 0.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|284172760|ref|YP_003406142.1| - 1.7e-06 28.4 3.3 3.2e-06 27.6 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284172760|ref|YP_003406142.1| - 2.3e-05 24.9 5.3 5.7e-05 23.6 5.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|284172760|ref|YP_003406142.1| - 0.00041 20.4 8.2 0.0023 18.1 8.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284172760|ref|YP_003406142.1| - 0.0012 18.5 13.1 0.0037 17.0 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|284172760|ref|YP_003406142.1| - 0.024 14.4 3.1 0.033 14.0 0.1 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_2 PF12797.7 gi|284172760|ref|YP_003406142.1| - 0.037 14.1 14.4 0.14 12.3 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|284172760|ref|YP_003406142.1| - 0.06 14.2 7.5 0.066 14.1 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284172760|ref|YP_003406142.1| - 0.08 13.9 9.0 0.19 12.7 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|284172760|ref|YP_003406142.1| - 0.085 13.4 13.2 0.25 12.0 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284172760|ref|YP_003406142.1| - 0.2 11.8 11.6 0.15 12.2 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|284172760|ref|YP_003406142.1| - 0.21 12.6 17.5 0.071 14.1 5.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284172760|ref|YP_003406142.1| - 0.43 10.8 10.6 0.15 12.3 1.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|284172761|ref|YP_003406143.1| - 2.3e-61 207.6 0.0 4.5e-61 206.6 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|284172761|ref|YP_003406143.1| - 3.9e-38 130.3 0.3 7.5e-38 129.4 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|284172761|ref|YP_003406143.1| - 3.5e-10 40.3 5.8 6.5e-10 39.4 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284172761|ref|YP_003406143.1| - 3.9e-10 40.0 5.8 8.7e-10 38.9 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|284172761|ref|YP_003406143.1| - 1.6e-06 28.3 0.6 0.031 14.5 0.0 3.1 4 0 0 4 4 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|284172761|ref|YP_003406143.1| - 2.3e-05 24.4 2.9 0.027 14.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284172761|ref|YP_003406143.1| - 0.0036 17.9 6.2 0.0081 16.7 6.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|284172761|ref|YP_003406143.1| - 0.005 17.0 6.4 0.022 14.9 6.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|284172761|ref|YP_003406143.1| - 0.014 15.5 10.2 0.25 11.5 1.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|284172761|ref|YP_003406143.1| - 0.037 13.8 13.1 0.25 11.2 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|284172761|ref|YP_003406143.1| - 0.057 13.6 0.1 0.057 13.6 0.1 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|284172761|ref|YP_003406143.1| - 0.11 13.0 12.9 0.2 12.2 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|284172761|ref|YP_003406143.1| - 0.33 11.2 2.7 0.31 11.2 0.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284172761|ref|YP_003406143.1| - 1.5 9.8 6.6 4.9 8.2 6.7 1.9 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|284172761|ref|YP_003406143.1| - 2.9 8.1 13.0 1.3 9.3 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Glyoxalase PF00903.25 gi|284172762|ref|YP_003406144.1| - 8.1e-12 45.5 0.8 1.2e-11 44.9 0.8 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|284172762|ref|YP_003406144.1| - 9.8e-10 38.7 0.4 2.2e-08 34.3 0.4 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|284172762|ref|YP_003406144.1| - 0.00011 22.9 0.4 0.00015 22.5 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|284172762|ref|YP_003406144.1| - 0.00031 20.7 0.0 0.00073 19.4 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|284172762|ref|YP_003406144.1| - 0.00055 20.1 0.1 0.005 17.0 0.1 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Histidinol_dh PF00815.20 gi|284172762|ref|YP_003406144.1| - 0.11 11.4 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Histidinol dehydrogenase IclR PF01614.18 gi|284172763|ref|YP_003406145.1| - 2.3e-33 114.8 0.0 5.5e-33 113.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172763|ref|YP_003406145.1| - 6.2e-10 38.7 0.1 2.9e-09 36.6 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172763|ref|YP_003406145.1| - 1.8e-06 27.7 0.1 3.6e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|284172763|ref|YP_003406145.1| - 2.4e-05 24.1 0.0 0.0001 22.1 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284172763|ref|YP_003406145.1| - 0.00022 21.0 0.2 0.00062 19.6 0.2 1.9 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|284172763|ref|YP_003406145.1| - 0.00058 20.0 0.1 0.0012 19.0 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|284172763|ref|YP_003406145.1| - 0.00099 19.0 0.0 0.0034 17.3 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|284172763|ref|YP_003406145.1| - 0.0038 17.7 0.1 0.0077 16.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|284172763|ref|YP_003406145.1| - 0.0039 17.3 0.0 0.0082 16.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|284172763|ref|YP_003406145.1| - 0.0084 16.2 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2203 PF09969.9 gi|284172763|ref|YP_003406145.1| - 0.032 14.9 0.2 4.3 8.1 0.1 2.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) LexA_DNA_bind PF01726.16 gi|284172763|ref|YP_003406145.1| - 0.037 13.8 0.0 0.097 12.5 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain B-block_TFIIIC PF04182.12 gi|284172763|ref|YP_003406145.1| - 0.041 14.0 0.0 0.079 13.1 0.0 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC SpoVT_C PF15714.5 gi|284172763|ref|YP_003406145.1| - 0.08 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor HpcH_HpaI PF03328.14 gi|284172764|ref|YP_003406146.1| - 2.4e-08 33.4 0.0 5.9e-08 32.1 0.0 1.6 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Ring_hydroxyl_A PF00848.19 gi|284172767|ref|YP_003406149.1| - 2.2e-17 63.7 11.7 7.3e-16 58.8 11.7 2.2 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|284172767|ref|YP_003406149.1| - 3.1e-17 62.3 0.0 7e-17 61.1 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|284172767|ref|YP_003406149.1| - 0.0052 16.7 0.0 0.018 14.9 0.0 1.9 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain Chorismate_bind PF00425.18 gi|284172770|ref|YP_003406152.1| - 1.5e-100 336.0 0.0 4.1e-100 334.6 0.0 1.7 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|284172770|ref|YP_003406152.1| - 2.8e-09 37.3 0.0 8.7e-09 35.7 0.0 1.8 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|284172771|ref|YP_003406153.1| - 3e-42 144.5 0.1 3.2e-41 141.2 0.1 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|284172771|ref|YP_003406153.1| - 2.5e-07 30.7 0.3 1.2e-06 28.4 0.3 1.9 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.18 gi|284172771|ref|YP_003406153.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein AstE_AspA PF04952.14 gi|284172772|ref|YP_003406154.1| - 5.1e-38 130.8 0.0 6e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family ATP-synt_ab_Xtn PF16886.5 gi|284172772|ref|YP_003406154.1| - 0.014 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension Creatininase PF02633.14 gi|284172773|ref|YP_003406155.1| - 4.6e-74 248.9 4.0 5.2e-74 248.7 4.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase T7SS_ESX_EspC PF10824.8 gi|284172773|ref|YP_003406155.1| - 0.051 14.0 0.5 0.43 11.1 0.1 2.4 2 0 0 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm DUF5132 PF17195.4 gi|284172773|ref|YP_003406155.1| - 3.3 7.9 6.7 5.9 7.1 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF5132) THF_DHG_CYH_C PF02882.19 gi|284172774|ref|YP_003406156.1| - 2e-66 222.2 1.9 2.6e-66 221.9 1.9 1.1 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|284172774|ref|YP_003406156.1| - 2.1e-36 124.7 0.0 3.2e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GCV_T PF01571.21 gi|284172775|ref|YP_003406157.1| - 3.7e-79 265.7 0.0 6.4e-79 264.9 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|284172775|ref|YP_003406157.1| - 6.3e-41 141.1 1.4 2.3e-40 139.3 0.7 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|284172775|ref|YP_003406157.1| - 3.4e-19 68.5 0.2 1e-18 67.0 0.2 1.9 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|284172775|ref|YP_003406157.1| - 3.2e-12 46.6 0.1 8e-12 45.3 0.1 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain NAD_binding_8 PF13450.6 gi|284172775|ref|YP_003406157.1| - 1.2e-05 25.5 0.1 3.9e-05 23.8 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284172775|ref|YP_003406157.1| - 5e-05 22.7 0.0 0.0034 16.7 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172775|ref|YP_003406157.1| - 0.00014 21.2 0.1 0.0041 16.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284172775|ref|YP_003406157.1| - 0.00057 19.1 0.3 0.0016 17.6 0.3 1.7 1 1 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|284172775|ref|YP_003406157.1| - 0.00065 19.4 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|284172775|ref|YP_003406157.1| - 0.0011 18.3 0.1 0.0025 17.2 0.1 1.4 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.6 gi|284172775|ref|YP_003406157.1| - 0.0015 18.6 0.2 1.6 8.7 0.0 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding SoxG PF04268.12 gi|284172775|ref|YP_003406157.1| - 0.0016 18.6 0.0 0.014 15.6 0.0 2.1 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family Pyr_redox PF00070.27 gi|284172775|ref|YP_003406157.1| - 0.0021 18.6 0.2 0.0067 17.0 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|284172775|ref|YP_003406157.1| - 0.0097 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Shikimate_DH PF01488.20 gi|284172775|ref|YP_003406157.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|284172775|ref|YP_003406157.1| - 0.033 14.4 0.1 0.068 13.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Lycopene_cycl PF05834.12 gi|284172775|ref|YP_003406157.1| - 0.047 12.7 0.3 0.085 11.9 0.3 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|284172775|ref|YP_003406157.1| - 0.17 11.2 0.1 0.33 10.2 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|284172775|ref|YP_003406157.1| - 0.27 9.9 0.5 12 4.4 0.3 2.2 2 0 0 2 2 2 0 HI0933-like protein PALP PF00291.25 gi|284172776|ref|YP_003406158.1| - 3.4e-86 289.3 7.3 4.9e-86 288.8 7.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|284172776|ref|YP_003406158.1| - 2.3e-05 24.1 0.4 9.1e-05 22.2 0.4 2.1 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|284172776|ref|YP_003406158.1| - 0.00069 20.2 1.8 0.00071 20.1 0.1 2.0 2 0 0 2 2 2 1 ACT domain BCCT PF02028.17 gi|284172777|ref|YP_003406159.1| - 2.6e-156 520.9 53.3 3e-156 520.7 53.3 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Ribonuc_L-PSP PF01042.21 gi|284172778|ref|YP_003406160.1| - 9.5e-41 138.6 0.0 1.1e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|284172778|ref|YP_003406160.1| - 0.0075 16.4 0.0 0.0098 16.0 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Formyl_trans_N PF00551.19 gi|284172779|ref|YP_003406161.1| - 1.4e-42 145.5 0.0 5.6e-42 143.5 0.0 1.8 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.6 gi|284172779|ref|YP_003406161.1| - 4.5e-11 42.6 0.3 1.1e-10 41.3 0.3 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|284172779|ref|YP_003406161.1| - 0.0041 17.7 0.3 0.0089 16.6 0.3 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|284172779|ref|YP_003406161.1| - 0.033 14.0 0.6 0.087 12.6 0.3 1.9 2 0 0 2 2 2 0 ACT domain tRNA_SAD PF07973.14 gi|284172780|ref|YP_003406162.1| - 4.1e-13 49.2 0.1 8e-13 48.3 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|284172780|ref|YP_003406162.1| - 3.2e-10 39.1 0.1 5e-10 38.5 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|284172780|ref|YP_003406162.1| - 5.8e-09 36.5 0.1 1.1e-08 35.5 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain YabA PF06156.13 gi|284172780|ref|YP_003406162.1| - 0.0026 18.4 0.1 0.0048 17.5 0.1 1.3 1 0 0 1 1 1 1 Initiation control protein YabA bZIP_1 PF00170.21 gi|284172780|ref|YP_003406162.1| - 0.4 10.8 1.0 0.8 9.9 1.0 1.4 1 0 0 1 1 1 0 bZIP transcription factor Pterin_bind PF00809.22 gi|284172781|ref|YP_003406163.1| - 4.1e-83 278.8 0.2 7.2e-83 278.0 0.2 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|284172781|ref|YP_003406163.1| - 1.5e-13 51.2 0.0 2.7e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|284172781|ref|YP_003406163.1| - 4e-09 36.6 0.0 1.8e-08 34.5 0.0 2.2 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.6 gi|284172781|ref|YP_003406163.1| - 0.24 10.8 8.6 4.5 6.6 0.0 4.3 3 2 1 5 5 5 0 Phosphoenolpyruvate phosphomutase AAA_23 PF13476.6 gi|284172782|ref|YP_003406164.1| - 6e-15 56.3 6.1 6e-15 56.3 6.1 3.6 1 1 2 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|284172782|ref|YP_003406164.1| - 1.9e-07 31.1 0.2 1.7e-06 28.0 0.2 2.7 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.8 gi|284172782|ref|YP_003406164.1| - 0.00015 19.5 56.3 0.0077 13.8 26.4 2.6 3 0 0 3 3 3 2 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.9 gi|284172782|ref|YP_003406164.1| - 0.00045 20.2 24.5 0.00045 20.2 24.5 4.5 1 1 2 3 3 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|284172782|ref|YP_003406164.1| - 0.00064 18.7 62.7 0.055 12.3 14.3 3.7 1 1 1 3 3 3 2 Spc7 kinetochore protein Cep57_CLD_2 PF14197.6 gi|284172782|ref|YP_003406164.1| - 0.0012 18.9 9.8 0.0012 18.9 9.8 5.4 3 2 1 4 4 3 1 Centrosome localisation domain of PPC89 DUF4201 PF13870.6 gi|284172782|ref|YP_003406164.1| - 0.004 16.9 9.1 0.004 16.9 9.1 4.4 3 2 2 5 5 4 2 Domain of unknown function (DUF4201) DivIC PF04977.15 gi|284172782|ref|YP_003406164.1| - 0.021 14.6 65.2 0.03 14.1 6.2 8.2 4 3 4 8 8 8 0 Septum formation initiator AAA_29 PF13555.6 gi|284172782|ref|YP_003406164.1| - 0.027 14.2 0.1 0.051 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3450 PF11932.8 gi|284172782|ref|YP_003406164.1| - 0.11 11.7 55.5 0.025 13.9 10.4 4.6 2 2 1 4 4 4 0 Protein of unknown function (DUF3450) Atg14 PF10186.9 gi|284172782|ref|YP_003406164.1| - 0.18 10.9 46.2 0.095 11.8 13.1 3.3 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 BLOC1_2 PF10046.9 gi|284172782|ref|YP_003406164.1| - 0.35 11.2 33.0 0.14 12.5 5.7 5.3 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LPP PF04728.13 gi|284172782|ref|YP_003406164.1| - 0.4 11.1 7.2 55 4.3 0.0 4.8 5 0 0 5 5 4 0 Lipoprotein leucine-zipper Fez1 PF06818.15 gi|284172782|ref|YP_003406164.1| - 2.1 8.7 61.9 0.32 11.4 12.7 3.5 1 1 0 2 2 2 0 Fez1 Sas6_CC PF18594.1 gi|284172782|ref|YP_003406164.1| - 2.3 8.1 7.5 5.5 6.9 0.2 3.6 3 0 0 3 3 3 0 Sas6/XLF/XRCC4 coiled-coil domain FPP PF05911.11 gi|284172782|ref|YP_003406164.1| - 2.8 6.0 50.3 0.21 9.7 30.3 2.3 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil DUF5082 PF16888.5 gi|284172782|ref|YP_003406164.1| - 3.9 7.8 43.1 0.29 11.4 12.4 5.8 2 2 1 4 4 4 0 Domain of unknown function (DUF5082) Golgin_A5 PF09787.9 gi|284172782|ref|YP_003406164.1| - 4.8 6.5 67.0 0.5 9.8 24.7 3.3 1 1 2 3 3 3 0 Golgin subfamily A member 5 GIT_CC PF16559.5 gi|284172782|ref|YP_003406164.1| - 5 7.1 11.4 23 5.0 0.1 4.6 4 1 1 5 5 5 0 GIT coiled-coil Rho guanine nucleotide exchange factor Baculo_PEP_C PF04513.12 gi|284172782|ref|YP_003406164.1| - 5.5 7.0 18.3 2.5 8.1 1.5 4.7 2 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|284172782|ref|YP_003406164.1| - 5.7 7.5 23.4 3.9 8.0 1.0 5.9 3 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|284172782|ref|YP_003406164.1| - 7.6 5.0 43.2 0.11 11.2 5.8 3.0 1 1 3 4 4 4 0 AAA domain GAS PF13851.6 gi|284172782|ref|YP_003406164.1| - 9 5.6 59.5 0.24 10.7 9.2 4.2 2 2 2 4 4 3 0 Growth-arrest specific micro-tubule binding Zn_ribbon_SprT PF17283.2 gi|284172783|ref|YP_003406165.1| - 0.0068 16.3 2.4 0.024 14.5 2.4 2.0 1 0 0 1 1 1 1 SprT-like zinc ribbon domain HTH_10 PF04967.12 gi|284172784|ref|YP_003406166.1| - 7.7e-16 57.6 0.0 1.2e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|284172784|ref|YP_003406166.1| - 0.0014 18.5 0.0 0.002 18.0 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HalOD1 PF18545.1 gi|284172785|ref|YP_003406167.1| - 1.9e-20 72.9 0.0 2.6e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 AFOR_C PF01314.18 gi|284172786|ref|YP_003406168.1| - 1.7e-117 392.7 4.8 2.1e-117 392.4 4.8 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284172786|ref|YP_003406168.1| - 5.9e-72 241.7 0.1 8.6e-72 241.2 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain PPDK_N PF01326.19 gi|284172788|ref|YP_003406170.1| - 4.5e-107 358.1 0.2 6.8e-107 357.5 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|284172788|ref|YP_003406170.1| - 2.2e-84 283.1 0.0 3.2e-84 282.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|284172788|ref|YP_003406170.1| - 4.8e-28 96.7 2.8 1.4e-27 95.2 2.8 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RdRP PF05183.12 gi|284172788|ref|YP_003406170.1| - 0.0066 15.1 0.0 0.18 10.4 0.0 2.1 2 0 0 2 2 2 1 RNA dependent RNA polymerase HpcH_HpaI PF03328.14 gi|284172788|ref|YP_003406170.1| - 0.011 14.9 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family PEPcase PF00311.17 gi|284172789|ref|YP_003406171.1| - 6.6e-242 805.0 0.0 9.6e-242 804.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|284172789|ref|YP_003406171.1| - 0.00019 20.1 0.0 0.00034 19.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Peptidase_M16 PF00675.20 gi|284172789|ref|YP_003406171.1| - 0.031 14.2 1.2 0.084 12.9 0.2 2.3 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) Activator-TraM PF11657.8 gi|284172789|ref|YP_003406171.1| - 0.04 13.7 0.1 0.04 13.7 0.1 2.3 3 0 0 3 3 3 0 Transcriptional activator TraM ADH_N PF08240.12 gi|284172791|ref|YP_003406173.1| - 1.7e-28 98.7 1.3 6.5e-28 96.8 1.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|284172791|ref|YP_003406173.1| - 4.2e-10 39.7 0.0 8.8e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|284172791|ref|YP_003406173.1| - 3.1e-08 33.4 1.0 8.8e-08 31.9 1.0 1.9 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Glu_dehyd_C PF16912.5 gi|284172791|ref|YP_003406173.1| - 0.0052 16.3 0.2 0.053 13.0 0.0 2.4 3 0 0 3 3 3 1 Glucose dehydrogenase C-terminus HI0933_like PF03486.14 gi|284172791|ref|YP_003406173.1| - 0.016 13.9 0.1 0.052 12.3 0.1 1.7 2 0 0 2 2 2 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|284172791|ref|YP_003406173.1| - 0.024 14.0 0.1 0.042 13.1 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|284172791|ref|YP_003406173.1| - 0.18 11.0 0.1 0.28 10.4 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase zf-DBF PF07535.12 gi|284172791|ref|YP_003406173.1| - 1 9.5 2.8 2 8.6 2.8 1.5 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.19 gi|284172792|ref|YP_003406174.1| - 2.1e-52 177.2 0.0 2.8e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|284172792|ref|YP_003406174.1| - 6.2e-27 93.4 0.0 1.2e-26 92.5 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|284172792|ref|YP_003406174.1| - 0.00036 20.5 0.0 0.023 14.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase GTP_EFTU PF00009.27 gi|284172792|ref|YP_003406174.1| - 0.00056 19.5 0.0 0.49 9.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|284172792|ref|YP_003406174.1| - 0.00071 20.0 0.0 0.0014 19.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|284172792|ref|YP_003406174.1| - 0.0018 18.6 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|284172792|ref|YP_003406174.1| - 0.0019 18.5 0.1 0.057 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|284172792|ref|YP_003406174.1| - 0.0031 16.6 0.1 0.0045 16.1 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|284172792|ref|YP_003406174.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|284172792|ref|YP_003406174.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|284172792|ref|YP_003406174.1| - 0.019 15.1 0.0 0.042 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284172792|ref|YP_003406174.1| - 0.024 15.2 0.1 0.038 14.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|284172792|ref|YP_003406174.1| - 0.034 14.0 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase MMR_HSR1 PF01926.23 gi|284172792|ref|YP_003406174.1| - 0.057 13.5 0.1 0.13 12.3 0.1 1.9 1 1 1 2 2 2 0 50S ribosome-binding GTPase ABC_tran PF00005.27 gi|284172792|ref|YP_003406174.1| - 0.071 13.6 0.0 0.14 12.6 0.0 1.5 2 0 0 2 2 1 0 ABC transporter AAA_18 PF13238.6 gi|284172792|ref|YP_003406174.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284172792|ref|YP_003406174.1| - 0.13 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|284172792|ref|YP_003406174.1| - 0.22 11.5 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain EamA PF00892.20 gi|284172793|ref|YP_003406175.1| - 2.8e-13 50.2 18.4 3.1e-13 50.1 18.4 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|284172793|ref|YP_003406175.1| - 0.0089 15.2 4.4 0.0089 15.2 4.4 1.4 1 1 0 1 1 1 1 Magnesium transporter NIPA Ring_hydroxyl_A PF00848.19 gi|284172794|ref|YP_003406176.1| - 1.2e-17 64.6 11.2 6.3e-16 59.0 11.2 2.3 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|284172794|ref|YP_003406176.1| - 0.0095 15.9 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain IclR PF01614.18 gi|284172795|ref|YP_003406177.1| - 1.3e-28 99.4 0.0 2e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172795|ref|YP_003406177.1| - 4.9e-09 35.9 0.2 1.1e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|284172795|ref|YP_003406177.1| - 0.00053 20.0 0.1 0.0019 18.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|284172795|ref|YP_003406177.1| - 0.00057 19.4 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172795|ref|YP_003406177.1| - 0.00083 19.2 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|284172795|ref|YP_003406177.1| - 0.0053 16.6 0.0 0.013 15.3 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|284172795|ref|YP_003406177.1| - 0.0057 16.6 0.0 0.009 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|284172795|ref|YP_003406177.1| - 0.0075 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|284172795|ref|YP_003406177.1| - 0.021 15.0 0.0 0.049 13.8 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|284172795|ref|YP_003406177.1| - 0.03 14.8 0.0 0.071 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Fe-ADH PF00465.19 gi|284172797|ref|YP_003406179.1| - 8.7e-118 393.3 0.1 9.8e-118 393.1 0.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|284172797|ref|YP_003406179.1| - 1.6e-14 54.2 0.0 2e-11 44.1 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Aldedh PF00171.22 gi|284172798|ref|YP_003406180.1| - 4.8e-167 556.1 0.0 5.3e-167 556.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|284172798|ref|YP_003406180.1| - 0.016 14.7 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) BCCT PF02028.17 gi|284172799|ref|YP_003406181.1| - 7.6e-108 361.0 39.5 8.7e-108 360.8 39.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter EamA PF00892.20 gi|284172800|ref|YP_003406182.1| - 4.1e-15 56.1 16.5 4.5e-15 56.0 16.5 1.0 1 0 0 1 1 1 1 EamA-like transporter family Mg_trans_NIPA PF05653.14 gi|284172800|ref|YP_003406182.1| - 7.3e-06 25.3 6.7 7.3e-06 25.3 6.7 1.6 1 1 1 2 2 2 1 Magnesium transporter NIPA TMEM234 PF10639.9 gi|284172800|ref|YP_003406182.1| - 0.56 10.3 5.7 2 8.4 5.7 1.9 1 1 0 1 1 1 0 Putative transmembrane family 234 DUF3624 PF12292.8 gi|284172800|ref|YP_003406182.1| - 2.1 8.8 5.1 1.5 9.3 0.3 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3624) Ring_hydroxyl_A PF00848.19 gi|284172803|ref|YP_003406185.1| - 4.2e-17 62.8 11.4 1.7e-15 57.6 11.4 2.2 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|284172803|ref|YP_003406185.1| - 5.8e-17 61.4 0.0 1.3e-16 60.3 0.0 1.6 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|284172803|ref|YP_003406185.1| - 0.0074 16.2 0.0 0.025 14.5 0.0 1.8 2 0 0 2 2 2 1 Rieske-like [2Fe-2S] domain Haem_degrading PF03928.14 gi|284172804|ref|YP_003406186.1| - 4.3e-33 113.9 0.0 4.9e-33 113.7 0.0 1.0 1 0 0 1 1 1 1 Haem-degrading GCV_T_C PF08669.11 gi|284172804|ref|YP_003406186.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycine cleavage T-protein C-terminal barrel domain GCV_T PF01571.21 gi|284172805|ref|YP_003406187.1| - 6.2e-81 271.6 0.1 8.9e-81 271.0 0.1 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|284172805|ref|YP_003406187.1| - 1.9e-50 172.5 0.8 3.4e-50 171.6 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|284172805|ref|YP_003406187.1| - 2.8e-17 62.4 0.1 8.2e-17 60.9 0.0 1.9 2 0 0 2 2 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|284172805|ref|YP_003406187.1| - 1e-11 44.9 0.4 3.1e-11 43.4 0.4 1.9 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain SoxG PF04268.12 gi|284172805|ref|YP_003406187.1| - 7.9e-07 29.3 0.0 1.6e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family Pyr_redox PF00070.27 gi|284172805|ref|YP_003406187.1| - 1.7e-06 28.5 0.2 0.0014 19.2 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|284172805|ref|YP_003406187.1| - 6.2e-06 25.5 0.1 1.9e-05 23.9 0.1 1.8 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|284172805|ref|YP_003406187.1| - 1.5e-05 25.2 0.6 8.9e-05 22.7 0.0 2.5 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|284172805|ref|YP_003406187.1| - 2.1e-05 23.9 0.1 0.0022 17.3 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|284172805|ref|YP_003406187.1| - 0.00096 18.5 0.2 0.19 10.9 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GMC_oxred_N PF00732.19 gi|284172805|ref|YP_003406187.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase TrkA_N PF02254.18 gi|284172805|ref|YP_003406187.1| - 0.015 15.5 0.0 0.054 13.7 0.0 2.0 1 0 0 1 1 1 0 TrkA-N domain HI0933_like PF03486.14 gi|284172805|ref|YP_003406187.1| - 0.021 13.5 0.1 0.26 9.9 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein ThiF PF00899.21 gi|284172805|ref|YP_003406187.1| - 0.021 14.2 0.1 0.042 13.2 0.1 1.4 1 0 0 1 1 1 0 ThiF family ApbA PF02558.16 gi|284172805|ref|YP_003406187.1| - 0.03 13.9 0.1 0.063 12.9 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|284172805|ref|YP_003406187.1| - 0.059 12.4 1.8 0.14 11.1 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein AFOR_C PF01314.18 gi|284172806|ref|YP_003406188.1| - 9.4e-98 327.7 0.0 1.3e-97 327.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|284172806|ref|YP_003406188.1| - 7.3e-64 215.3 0.1 1e-63 214.8 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain WW_1 PF18507.1 gi|284172808|ref|YP_003406190.1| - 0.08 12.6 0.6 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 WW domain DUF695 PF05117.12 gi|284172808|ref|YP_003406190.1| - 0.09 12.9 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF695) NADH_4Fe-4S PF10589.9 gi|284172809|ref|YP_003406191.1| - 6e-18 64.7 0.0 1.1e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|284172809|ref|YP_003406191.1| - 2.7e-14 53.3 0.0 4.3e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.9 gi|284172809|ref|YP_003406191.1| - 0.089 12.7 0.0 0.28 11.1 0.0 1.9 1 0 0 1 1 1 0 SLBB domain Molybdopterin PF00384.22 gi|284172810|ref|YP_003406192.1| - 7e-85 285.6 0.0 8.6e-85 285.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|284172810|ref|YP_003406192.1| - 1.8e-31 108.5 0.0 3.5e-31 107.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|284172810|ref|YP_003406192.1| - 2.5e-28 97.9 0.5 5.6e-28 96.8 0.5 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|284172810|ref|YP_003406192.1| - 4.7e-13 48.4 1.0 4.7e-13 48.4 1.0 2.3 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 gi|284172810|ref|YP_003406192.1| - 1.1e-09 38.1 0.1 4.8e-09 36.1 0.1 2.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 gi|284172810|ref|YP_003406192.1| - 9.8e-09 35.2 8.5 9.8e-09 35.2 8.5 3.0 4 0 0 4 4 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|284172810|ref|YP_003406192.1| - 3.3e-07 30.8 9.0 3.3e-07 30.8 9.0 3.7 3 2 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|284172810|ref|YP_003406192.1| - 2.1e-06 27.3 23.4 2.5e-05 23.9 2.8 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|284172810|ref|YP_003406192.1| - 6.5e-06 26.0 12.2 0.00029 20.8 2.5 3.8 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|284172810|ref|YP_003406192.1| - 7.9e-06 25.9 8.3 7.9e-06 25.9 8.3 3.9 2 1 2 4 4 3 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|284172810|ref|YP_003406192.1| - 9.5e-05 22.8 7.7 9.5e-05 22.8 7.7 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|284172810|ref|YP_003406192.1| - 0.00038 21.3 0.4 0.00038 21.3 0.4 3.6 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|284172810|ref|YP_003406192.1| - 0.0021 18.1 13.2 0.0021 18.1 13.2 3.6 4 1 1 5 5 4 2 4Fe-4S dicluster domain CDC48_N PF02359.18 gi|284172810|ref|YP_003406192.1| - 0.036 14.3 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_15 PF13459.6 gi|284172810|ref|YP_003406192.1| - 0.079 13.7 14.1 0.3 11.9 2.4 4.1 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|284172810|ref|YP_003406192.1| - 0.32 11.9 14.2 0.4 11.5 1.2 3.9 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|284172810|ref|YP_003406192.1| - 0.47 10.7 15.9 0.037 14.2 2.0 2.8 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|284172810|ref|YP_003406192.1| - 0.55 10.8 11.8 5.1 7.7 2.9 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Ribonuc_L-PSP PF01042.21 gi|284172812|ref|YP_003406194.1| - 9.2e-40 135.4 0.0 1e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|284172812|ref|YP_003406194.1| - 0.0083 16.3 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease Rrn6 PF10214.9 gi|284172812|ref|YP_003406194.1| - 0.25 9.8 0.1 0.28 9.6 0.1 1.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor SHMT PF00464.19 gi|284172813|ref|YP_003406195.1| - 7.8e-157 522.0 0.1 9.2e-157 521.7 0.1 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|284172813|ref|YP_003406195.1| - 7e-09 35.3 0.0 1.2e-08 34.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|284172813|ref|YP_003406195.1| - 0.00016 21.1 0.0 0.0067 15.7 0.0 2.0 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|284172813|ref|YP_003406195.1| - 0.00094 18.6 0.4 0.0013 18.1 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ATP-synt_F PF01990.17 gi|284172813|ref|YP_003406195.1| - 0.095 13.0 0.0 0.28 11.5 0.0 1.7 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit BCCT PF02028.17 gi|284172814|ref|YP_003406196.1| - 1.1e-159 532.1 46.2 1.3e-159 531.8 46.2 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter BCCT PF02028.17 gi|284172815|ref|YP_003406197.1| - 7.2e-155 516.1 40.2 9e-155 515.8 40.2 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter HalOD1 PF18545.1 gi|284172816|ref|YP_003406198.1| - 8.4e-35 118.9 1.2 1.2e-16 60.8 0.0 2.2 2 0 0 2 2 2 2 Halobacterial output domain 1 BCCT PF02028.17 gi|284172817|ref|YP_003406199.1| - 1.7e-145 485.2 40.9 1.9e-145 485.0 40.9 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter FHIPEP PF00771.20 gi|284172817|ref|YP_003406199.1| - 0.1 11.0 0.0 0.16 10.4 0.0 1.2 1 0 0 1 1 1 0 FHIPEP family DUF4239 PF14023.6 gi|284172817|ref|YP_003406199.1| - 0.83 9.3 6.7 0.32 10.7 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) BPD_transp_1 PF00528.22 gi|284172818|ref|YP_003406200.1| - 2.1e-22 79.8 17.9 2.8e-22 79.3 17.9 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|284172819|ref|YP_003406201.1| - 1.5e-36 126.0 0.0 2.7e-36 125.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|284172819|ref|YP_003406201.1| - 4e-08 33.4 0.0 0.00051 19.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CBS PF00571.28 gi|284172819|ref|YP_003406201.1| - 2.3e-07 31.1 1.2 3.3e-07 30.6 0.1 1.9 2 0 0 2 2 1 1 CBS domain AAA_22 PF13401.6 gi|284172819|ref|YP_003406201.1| - 0.00023 21.4 0.1 0.00045 20.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|284172819|ref|YP_003406201.1| - 0.0017 18.7 0.0 0.0029 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|284172819|ref|YP_003406201.1| - 0.0019 18.1 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|284172819|ref|YP_003406201.1| - 0.0022 18.4 0.0 0.015 15.7 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|284172819|ref|YP_003406201.1| - 0.0023 17.7 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|284172819|ref|YP_003406201.1| - 0.0025 17.8 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|284172819|ref|YP_003406201.1| - 0.004 17.1 0.0 0.013 15.4 0.0 1.8 2 0 0 2 2 2 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|284172819|ref|YP_003406201.1| - 0.0076 16.6 0.0 0.018 15.5 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_29 PF13555.6 gi|284172819|ref|YP_003406201.1| - 0.045 13.5 0.0 0.093 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|284172819|ref|YP_003406201.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|284172819|ref|YP_003406201.1| - 0.061 13.8 0.1 0.14 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|284172819|ref|YP_003406201.1| - 0.073 13.1 0.0 0.19 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|284172819|ref|YP_003406201.1| - 0.089 12.3 0.1 0.15 11.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|284172819|ref|YP_003406201.1| - 0.11 12.1 0.2 0.38 10.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|284172819|ref|YP_003406201.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|284172819|ref|YP_003406201.1| - 0.11 11.9 0.0 6.2 6.2 0.1 2.2 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|284172819|ref|YP_003406201.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|284172819|ref|YP_003406201.1| - 0.17 12.1 0.1 0.4 10.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|284172819|ref|YP_003406201.1| - 0.18 11.0 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|284172819|ref|YP_003406201.1| - 0.21 11.8 0.6 0.6 10.3 0.6 1.9 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|284172820|ref|YP_003406202.1| - 4.4e-19 68.9 17.0 5.9e-19 68.5 17.0 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SecE PF00584.20 gi|284172820|ref|YP_003406202.1| - 0.061 13.3 0.3 0.061 13.3 0.3 3.1 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex OpuAC PF04069.12 gi|284172821|ref|YP_003406203.1| - 6.5e-47 160.3 0.0 7.4e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system IclR PF01614.18 gi|284172822|ref|YP_003406204.1| - 8.3e-29 100.0 0.0 1.9e-28 98.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172822|ref|YP_003406204.1| - 4.6e-07 29.5 0.0 3.2e-06 26.8 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|284172822|ref|YP_003406204.1| - 4.9e-06 26.3 0.1 1.9e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|284172822|ref|YP_003406204.1| - 3.9e-05 23.6 0.0 8.8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|284172822|ref|YP_003406204.1| - 0.00033 20.3 0.1 0.0014 18.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|284172822|ref|YP_003406204.1| - 0.00073 19.4 0.1 0.0034 17.2 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|284172822|ref|YP_003406204.1| - 0.0011 18.8 0.1 0.0028 17.5 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|284172822|ref|YP_003406204.1| - 0.0053 16.5 0.0 0.077 12.8 0.0 2.7 3 0 0 3 3 3 1 Homeodomain-like domain HTH_11 PF08279.12 gi|284172822|ref|YP_003406204.1| - 0.015 15.2 0.0 0.075 13.0 0.0 2.3 2 0 0 2 2 2 0 HTH domain Rrf2 PF02082.20 gi|284172822|ref|YP_003406204.1| - 0.017 15.4 0.0 0.042 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF742 PF05331.11 gi|284172822|ref|YP_003406204.1| - 0.042 13.7 0.0 0.081 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_24 PF13412.6 gi|284172822|ref|YP_003406204.1| - 0.066 12.8 0.0 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|284172822|ref|YP_003406204.1| - 0.079 12.6 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Amidohydro_2 PF04909.14 gi|284172824|ref|YP_003406206.1| - 9.8e-33 114.2 0.6 1.5e-32 113.6 0.6 1.4 1 1 0 1 1 1 1 Amidohydrolase Rieske PF00355.26 gi|284172825|ref|YP_003406207.1| - 2.6e-15 56.1 0.9 2.5e-14 53.0 0.9 2.0 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|284172825|ref|YP_003406207.1| - 3e-11 43.2 0.0 1.9e-05 24.5 0.0 2.0 2 0 0 2 2 2 2 Rieske-like [2Fe-2S] domain Aldedh PF00171.22 gi|284172826|ref|YP_003406208.1| - 7.9e-165 548.8 0.0 8.8e-165 548.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family COMMD1_N PF17221.3 gi|284172826|ref|YP_003406208.1| - 0.033 14.5 0.0 0.062 13.6 0.0 1.3 1 0 0 1 1 1 0 COMMD1 N-terminal domain LuxC PF05893.14 gi|284172826|ref|YP_003406208.1| - 0.19 10.8 0.1 0.54 9.2 0.0 1.8 2 0 0 2 2 2 0 Acyl-CoA reductase (LuxC) HalOD1 PF18545.1 gi|284172828|ref|YP_003406210.1| - 2.8e-24 85.1 0.8 2.8e-24 85.1 0.8 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 DEP PF00610.21 gi|284172830|ref|YP_003406212.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) PAC2 PF09754.9 gi|284172831|ref|YP_003406213.1| - 6.9e-20 72.0 0.6 8.1e-20 71.7 0.6 1.1 1 0 0 1 1 1 1 PAC2 family NTP_transf_3 PF12804.7 gi|284172831|ref|YP_003406213.1| - 0.0054 17.1 0.4 0.0067 16.8 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain HIP1_clath_bdg PF16515.5 gi|284172831|ref|YP_003406213.1| - 1.1 9.9 12.7 5.1 7.8 9.9 2.4 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Spc24 PF08286.11 gi|284172831|ref|YP_003406213.1| - 5.1 7.4 7.1 3.9 7.8 5.1 1.7 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DDE_Tnp_IS240 PF13610.6 gi|284172832|ref|YP_003406214.1| - 0.00013 22.3 0.0 0.00013 22.3 0.0 1.0 1 0 0 1 1 1 1 DDE domain Fic_N PF13784.6 gi|284172833|ref|YP_003406215.1| - 2.5e-24 85.1 0.7 4e-24 84.5 0.7 1.3 1 0 0 1 1 1 1 Fic/DOC family N-terminal DUF4172 PF13776.6 gi|284172833|ref|YP_003406215.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) OrfB_IS605 PF01385.19 gi|284172834|ref|YP_003406216.1| - 1.2e-22 80.3 0.0 3e-22 79.1 0.0 1.7 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|284172834|ref|YP_003406216.1| - 3.1e-21 75.1 1.0 6.2e-21 74.1 0.6 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|284172834|ref|YP_003406216.1| - 0.0055 17.0 0.8 0.014 15.7 0.8 1.6 1 0 0 1 1 1 1 C1 domain zf-ACC PF17848.1 gi|284172834|ref|YP_003406216.1| - 0.064 13.3 2.4 0.16 12.1 2.4 1.7 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain DUF4298 PF14131.6 gi|284172834|ref|YP_003406216.1| - 0.19 11.7 0.1 0.19 11.7 0.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4298) TF_Zn_Ribbon PF08271.12 gi|284172834|ref|YP_003406216.1| - 0.23 11.0 3.0 0.67 9.5 3.0 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_3 PF01381.22 gi|284172835|ref|YP_003406217.1| - 0.1 12.7 0.1 0.19 11.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix AAA_16 PF13191.6 gi|284172836|ref|YP_003406218.1| - 6.7e-13 49.4 0.4 2.4e-12 47.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|284172836|ref|YP_003406218.1| - 1.8e-12 47.8 0.0 3.8e-12 46.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|284172836|ref|YP_003406218.1| - 5.3e-09 35.9 0.1 1.8e-08 34.2 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain TniB PF05621.11 gi|284172836|ref|YP_003406218.1| - 2.1e-07 30.6 0.0 4.4e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein AAA_22 PF13401.6 gi|284172836|ref|YP_003406218.1| - 3.1e-07 30.7 0.0 8.8e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|284172836|ref|YP_003406218.1| - 4.4e-06 26.0 0.0 9.4e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|284172836|ref|YP_003406218.1| - 1.3e-05 25.2 0.0 2.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|284172836|ref|YP_003406218.1| - 0.00065 19.7 0.1 0.0025 17.8 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|284172836|ref|YP_003406218.1| - 0.0013 18.5 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|284172836|ref|YP_003406218.1| - 0.0013 18.3 0.0 0.0054 16.3 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region ABC_tran PF00005.27 gi|284172836|ref|YP_003406218.1| - 0.0015 19.1 0.1 0.0072 16.9 0.1 2.4 1 1 1 2 2 2 1 ABC transporter MMR_HSR1 PF01926.23 gi|284172836|ref|YP_003406218.1| - 0.0029 17.7 0.0 0.021 14.9 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|284172836|ref|YP_003406218.1| - 0.0062 17.1 0.1 0.43 11.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|284172836|ref|YP_003406218.1| - 0.012 15.9 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|284172836|ref|YP_003406218.1| - 0.018 14.8 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|284172836|ref|YP_003406218.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|284172836|ref|YP_003406218.1| - 0.022 15.1 0.0 0.067 13.6 0.0 1.9 1 0 0 1 1 1 0 RNA helicase RsgA_GTPase PF03193.16 gi|284172836|ref|YP_003406218.1| - 0.054 13.4 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 1 0 RsgA GTPase AAA_5 PF07728.14 gi|284172836|ref|YP_003406218.1| - 0.061 13.3 0.0 0.37 10.8 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|284172836|ref|YP_003406218.1| - 0.067 12.9 0.0 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|284172836|ref|YP_003406218.1| - 0.092 12.3 0.0 0.6 9.6 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|284172837|ref|YP_003406219.1| - 2.7e-28 99.1 0.0 3.9e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|284172837|ref|YP_003406219.1| - 2e-10 40.8 0.0 3.1e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|284172837|ref|YP_003406219.1| - 1.3e-05 24.8 0.0 0.00059 19.4 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|284172837|ref|YP_003406219.1| - 4.8e-05 22.9 0.0 9.5e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|284172837|ref|YP_003406219.1| - 0.00089 18.6 0.0 0.05 12.9 0.0 2.4 2 0 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|284172837|ref|YP_003406219.1| - 0.00095 18.7 0.1 0.006 16.1 0.0 2.3 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|284172837|ref|YP_003406219.1| - 0.0011 18.2 0.4 0.025 13.8 0.0 2.6 3 0 0 3 3 3 1 Anion-transporting ATPase Lin-8 PF03353.15 gi|284172838|ref|YP_003406220.1| - 0.051 13.1 8.7 0.095 12.2 8.7 1.4 1 1 0 1 1 1 0 Ras-mediated vulval-induction antagonist LAP1C PF05609.12 gi|284172838|ref|YP_003406220.1| - 1.1 8.2 10.3 1.3 8.1 10.3 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) SPX PF03105.19 gi|284172838|ref|YP_003406220.1| - 2.1 8.2 13.1 2.2 8.1 13.1 1.1 1 0 0 1 1 1 0 SPX domain BUD22 PF09073.10 gi|284172838|ref|YP_003406220.1| - 3.2 7.0 20.8 4 6.7 20.8 1.0 1 0 0 1 1 1 0 BUD22 GREB1 PF15782.5 gi|284172838|ref|YP_003406220.1| - 7.2 3.6 6.1 8.1 3.4 6.1 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer Presenilin PF01080.17 gi|284172838|ref|YP_003406220.1| - 9.4 4.9 7.6 10 4.8 7.6 1.1 1 0 0 1 1 1 0 Presenilin Apt1 PF10351.9 gi|284172838|ref|YP_003406220.1| - 9.8 4.9 10.3 9.7 4.9 10.3 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain PadR PF03551.14 gi|284172839|ref|YP_003406221.1| - 2.6e-17 62.6 1.4 3.1e-17 62.3 1.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|284172839|ref|YP_003406221.1| - 0.0037 17.0 0.0 0.0057 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|284172839|ref|YP_003406221.1| - 0.0043 17.0 0.1 0.0059 16.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|284172839|ref|YP_003406221.1| - 0.037 13.9 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|284172839|ref|YP_003406221.1| - 0.075 13.5 0.2 0.093 13.2 0.2 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain AsnC_trans_reg PF01037.21 gi|284172840|ref|YP_003406222.1| - 7.2e-13 48.3 0.0 1.2e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|284172840|ref|YP_003406222.1| - 9.7e-11 41.1 1.2 1.3e-10 40.6 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|284172840|ref|YP_003406222.1| - 2.8e-08 33.5 0.7 1.1e-07 31.6 0.2 2.1 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|284172840|ref|YP_003406222.1| - 2.6e-07 30.5 0.1 7e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|284172840|ref|YP_003406222.1| - 2.7e-06 27.1 0.2 4.3e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|284172840|ref|YP_003406222.1| - 1.9e-05 24.3 0.1 0.00012 21.8 0.1 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|284172840|ref|YP_003406222.1| - 5.6e-05 22.7 0.1 0.00012 21.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|284172840|ref|YP_003406222.1| - 0.00014 21.8 0.1 0.00024 21.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284172840|ref|YP_003406222.1| - 0.00051 20.0 0.0 0.00083 19.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|284172840|ref|YP_003406222.1| - 0.00097 19.0 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|284172840|ref|YP_003406222.1| - 0.00097 18.9 0.1 0.0018 18.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.19 gi|284172840|ref|YP_003406222.1| - 0.0012 18.7 0.1 0.0023 17.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|284172840|ref|YP_003406222.1| - 0.0028 17.4 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|284172840|ref|YP_003406222.1| - 0.0041 17.2 0.0 0.0067 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|284172840|ref|YP_003406222.1| - 0.011 16.1 0.1 0.045 14.2 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_41 PF14502.6 gi|284172840|ref|YP_003406222.1| - 0.014 15.1 0.1 0.093 12.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|284172840|ref|YP_003406222.1| - 0.028 14.5 0.0 0.084 13.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MarR_2 PF12802.7 gi|284172840|ref|YP_003406222.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Mga PF05043.13 gi|284172840|ref|YP_003406222.1| - 0.038 14.6 0.1 0.14 12.8 0.0 1.9 3 0 0 3 3 1 0 Mga helix-turn-helix domain HTH_23 PF13384.6 gi|284172840|ref|YP_003406222.1| - 0.04 13.7 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.6 gi|284172840|ref|YP_003406222.1| - 0.045 13.9 0.1 0.1 12.8 0.0 1.5 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|284172840|ref|YP_003406222.1| - 0.047 13.5 0.1 0.081 12.7 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_50 PF18024.1 gi|284172840|ref|YP_003406222.1| - 0.048 13.3 0.0 0.099 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|284172840|ref|YP_003406222.1| - 0.055 13.7 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_47 PF16221.5 gi|284172840|ref|YP_003406222.1| - 0.07 12.7 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Trp_repressor PF01371.19 gi|284172840|ref|YP_003406222.1| - 0.07 13.3 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Trp repressor protein DUF4250 PF14056.6 gi|284172840|ref|YP_003406222.1| - 0.1 12.5 0.8 0.26 11.2 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) Rrf2 PF02082.20 gi|284172840|ref|YP_003406222.1| - 0.12 12.7 0.0 0.33 11.3 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|284172840|ref|YP_003406222.1| - 0.13 12.8 0.1 0.31 11.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DLH PF01738.18 gi|284172841|ref|YP_003406223.1| - 1.6e-08 34.4 0.0 5.1e-08 32.7 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|284172841|ref|YP_003406223.1| - 2.5e-08 33.7 0.2 6.8e-08 32.2 0.2 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|284172841|ref|YP_003406223.1| - 5e-07 29.6 0.0 0.0022 17.7 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_7 PF12715.7 gi|284172841|ref|YP_003406223.1| - 0.00029 20.2 0.0 0.0019 17.5 0.0 1.9 1 1 0 1 1 1 1 Abhydrolase family BAAT_C PF08840.11 gi|284172841|ref|YP_003406223.1| - 0.00075 19.5 0.0 0.0046 16.9 0.0 1.9 1 1 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|284172841|ref|YP_003406223.1| - 0.00087 20.0 2.9 0.013 16.2 2.5 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|284172841|ref|YP_003406223.1| - 0.002 17.4 0.3 0.53 9.5 0.1 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 PGAP1 PF07819.13 gi|284172841|ref|YP_003406223.1| - 0.0099 15.6 0.0 0.021 14.5 0.0 1.3 1 1 0 1 1 1 1 PGAP1-like protein FSH1 PF03959.13 gi|284172841|ref|YP_003406223.1| - 0.23 11.1 0.0 0.68 9.5 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase (FSH1) tRNA-synt_2b PF00587.25 gi|284172842|ref|YP_003406224.1| - 0.024 14.6 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) DUF21 PF01595.20 gi|284172843|ref|YP_003406225.1| - 2.6e-50 170.6 1.9 3.8e-50 170.0 1.9 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|284172843|ref|YP_003406225.1| - 2.5e-21 75.5 2.4 2.5e-21 75.5 2.4 2.1 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|284172843|ref|YP_003406225.1| - 6.1e-13 49.0 3.2 1.6e-05 25.2 0.2 2.8 2 0 0 2 2 2 2 CBS domain CbiX PF01903.17 gi|284172843|ref|YP_003406225.1| - 0.086 13.2 1.5 1.1 9.6 0.3 2.4 2 0 0 2 2 2 0 CbiX Beta_helix PF13229.6 gi|284172846|ref|YP_003406228.1| - 4e-06 26.8 5.3 0.012 15.5 0.2 3.0 2 1 1 3 3 3 2 Right handed beta helix region DUF1349 PF07081.11 gi|284172846|ref|YP_003406228.1| - 4.2e-05 23.4 0.1 0.00029 20.6 0.1 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1349) NosD PF05048.13 gi|284172846|ref|YP_003406228.1| - 0.051 12.8 1.6 0.55 9.5 0.7 2.3 2 1 0 2 2 2 0 Periplasmic copper-binding protein (NosD) Pec_lyase_C PF00544.19 gi|284172846|ref|YP_003406228.1| - 0.094 12.3 1.8 0.32 10.5 1.8 1.9 1 1 0 1 1 1 0 Pectate lyase Glyco_transf_92 PF01697.27 gi|284172846|ref|YP_003406228.1| - 0.19 11.3 0.0 0.35 10.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 92 IclR PF01614.18 gi|284172847|ref|YP_003406229.1| - 1.1e-36 125.5 0.1 1.7e-36 124.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|284172847|ref|YP_003406229.1| - 2.4e-11 43.3 0.1 1e-10 41.3 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|284172847|ref|YP_003406229.1| - 1.6e-09 37.1 0.0 3.4e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|284172847|ref|YP_003406229.1| - 5.6e-08 32.5 0.0 1.4e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|284172847|ref|YP_003406229.1| - 2.7e-05 24.0 0.1 0.00014 21.8 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|284172847|ref|YP_003406229.1| - 3.4e-05 23.8 0.1 0.0001 22.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|284172847|ref|YP_003406229.1| - 5.2e-05 23.0 0.0 0.00012 21.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|284172847|ref|YP_003406229.1| - 0.00013 21.8 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|284172847|ref|YP_003406229.1| - 0.001 18.7 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|284172847|ref|YP_003406229.1| - 0.0021 17.8 0.1 0.0046 16.7 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|284172847|ref|YP_003406229.1| - 0.0044 17.0 0.1 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|284172847|ref|YP_003406229.1| - 0.0047 16.7 0.0 0.017 14.9 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|284172847|ref|YP_003406229.1| - 0.0073 16.1 0.0 0.021 14.6 0.0 1.8 2 0 0 2 2 1 1 LexA DNA binding domain HTH_AsnC-type PF13404.6 gi|284172847|ref|YP_003406229.1| - 0.01 15.7 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|284172847|ref|YP_003406229.1| - 0.034 14.0 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB KfrA_N PF11740.8 gi|284172847|ref|YP_003406229.1| - 0.064 13.9 0.0 0.2 12.3 0.0 1.9 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term HTH_1 PF00126.27 gi|284172847|ref|YP_003406229.1| - 0.087 12.8 0.3 0.36 10.8 0.0 2.2 3 0 0 3 3 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|284172847|ref|YP_003406229.1| - 0.089 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|284172847|ref|YP_003406229.1| - 0.1 12.8 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|284172847|ref|YP_003406229.1| - 0.12 12.9 0.1 0.35 11.4 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|284172847|ref|YP_003406229.1| - 0.12 12.5 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain T7SS_ESX_EspC PF10824.8 gi|284172847|ref|YP_003406229.1| - 0.41 11.1 0.1 0.41 11.1 0.1 2.5 4 0 0 4 4 2 0 Excreted virulence factor EspC, type VII ESX diderm Beta_helix PF13229.6 gi|284172848|ref|YP_003406230.1| - 0.0032 17.4 3.8 0.0076 16.1 1.0 2.2 1 1 1 2 2 2 2 Right handed beta helix region Pec_lyase_C PF00544.19 gi|284172848|ref|YP_003406230.1| - 0.0097 15.5 0.3 0.038 13.6 0.3 1.8 1 1 0 1 1 1 1 Pectate lyase Pectate_lyase_2 PF06917.12 gi|284172849|ref|YP_003406231.1| - 3.9e-73 246.9 0.0 1.6e-70 238.3 0.0 2.9 1 1 0 1 1 1 1 Periplasmic pectate lyase GlcNAc_2-epim PF07221.11 gi|284172849|ref|YP_003406231.1| - 0.012 14.9 0.4 0.25 10.5 0.0 2.6 3 0 0 3 3 3 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_4 PF02056.16 gi|284172850|ref|YP_003406232.1| - 1.1e-50 171.7 0.0 1.8e-50 171.1 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|284172850|ref|YP_003406232.1| - 3e-44 151.6 0.0 4.4e-44 151.1 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.23 gi|284172850|ref|YP_003406232.1| - 0.084 13.0 0.1 2.1 8.5 0.0 2.3 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Secretin PF00263.21 gi|284172851|ref|YP_003406233.1| - 0.054 13.1 0.8 0.18 11.5 0.8 1.8 1 0 0 1 1 1 0 Bacterial type II and III secretion system protein Cas6_N PF17952.1 gi|284172851|ref|YP_003406233.1| - 0.073 13.4 0.7 1 9.7 0.0 3.0 4 0 0 4 4 4 0 Cas6 N-terminal domain DUF1349 PF07081.11 gi|284172852|ref|YP_003406234.1| - 2e-10 40.7 0.0 3.7e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) TAT_signal PF10518.9 gi|284172852|ref|YP_003406234.1| - 0.0008 19.2 0.3 0.0018 18.1 0.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|284172852|ref|YP_003406234.1| - 0.0034 17.2 11.7 0.22 11.3 1.0 2.7 2 1 2 4 4 4 3 Right handed beta helix region DUF1583 PF07622.11 gi|284172852|ref|YP_003406234.1| - 0.023 13.4 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1583) Glyco_hydro_28 PF00295.17 gi|284172853|ref|YP_003406235.1| - 6.2e-50 170.1 4.4 2.4e-48 164.9 2.3 3.0 3 1 0 3 3 3 1 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.7 gi|284172853|ref|YP_003406235.1| - 2.9e-17 63.3 4.2 4.3e-10 39.8 0.0 2.8 2 1 0 2 2 2 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|284172853|ref|YP_003406235.1| - 3.2e-11 43.3 4.2 1.4e-07 31.5 8.7 3.0 2 1 0 2 2 2 1 Right handed beta helix region NosD PF05048.13 gi|284172853|ref|YP_003406235.1| - 8e-05 22.0 4.1 0.00096 18.5 0.8 2.4 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Pec_lyase_C PF00544.19 gi|284172853|ref|YP_003406235.1| - 0.0022 17.6 1.6 0.0046 16.6 1.6 1.5 1 0 0 1 1 1 1 Pectate lyase DUF1565 PF07602.11 gi|284172853|ref|YP_003406235.1| - 0.0028 17.0 0.5 0.0063 15.9 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1565) DUF4957 PF16318.5 gi|284172853|ref|YP_003406235.1| - 0.0069 16.3 0.5 0.053 13.5 0.2 2.5 3 1 1 4 4 4 1 Domain of unknown function (DUF4957) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013745.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013745.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013745.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloterrigena_turkmenica_DSM_5511_uid43501/NC_013745.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 14:04:24 2019 # [ok]